BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (298 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 432 e-120 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 420 e-116 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 419 e-116 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 359 7e-98 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 320 4e-86 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 308 1e-82 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 298 2e-79 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 293 6e-78 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 292 1e-77 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 290 5e-77 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 284 3e-75 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 282 1e-74 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 279 8e-74 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 277 4e-73 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 273 5e-72 UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria Rep... 265 2e-69 UniRef50_UPI00019103C7 site-specific tyrosine recombinase XerD n... 257 3e-67 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 257 4e-67 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 255 1e-66 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 251 2e-65 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 249 6e-65 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 249 7e-65 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 249 1e-64 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 248 1e-64 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 248 2e-64 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 243 5e-63 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 239 6e-62 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 238 2e-61 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 238 3e-61 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 237 4e-61 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 236 5e-61 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 236 5e-61 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 236 9e-61 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 234 2e-60 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 234 2e-60 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 233 4e-60 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 232 2e-59 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 230 4e-59 UniRef50_Q89XW5 Tyrosine recombinase xerD n=10 Tax=Alphaproteoba... 229 1e-58 UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteoba... 229 1e-58 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 228 2e-58 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 227 5e-58 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 226 6e-58 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 226 8e-58 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 225 1e-57 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 225 1e-57 UniRef50_Q98FX8 Tyrosine recombinase xerD n=2 Tax=Mesorhizobium ... 225 1e-57 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 225 1e-57 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 224 3e-57 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 224 3e-57 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 223 9e-57 UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacterac... 222 1e-56 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 221 2e-56 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 220 4e-56 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 220 4e-56 UniRef50_B3PPF3 Tyrosine site-specific integrase/recombinase pro... 220 5e-56 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 218 2e-55 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 218 2e-55 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 218 2e-55 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 218 3e-55 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 215 1e-54 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 215 2e-54 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 215 2e-54 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 215 2e-54 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 214 2e-54 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 214 2e-54 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 213 5e-54 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 213 5e-54 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 213 6e-54 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 212 1e-53 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 212 1e-53 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 212 1e-53 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 212 2e-53 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 211 2e-53 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 211 3e-53 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 209 9e-53 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 209 9e-53 UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes ... 209 9e-53 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 209 1e-52 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 209 1e-52 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 209 1e-52 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 209 1e-52 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 208 2e-52 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 208 2e-52 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 208 2e-52 UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadacea... 207 3e-52 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 207 5e-52 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 206 6e-52 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 206 6e-52 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 206 7e-52 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 206 8e-52 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 206 1e-51 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 206 1e-51 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 205 2e-51 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 205 2e-51 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 204 3e-51 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 203 6e-51 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 202 1e-50 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 202 1e-50 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 202 2e-50 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 201 2e-50 UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacil... 201 2e-50 UniRef50_Q5UF10 Predicted site-specific recombinase n=1 Tax=uncu... 201 3e-50 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 201 3e-50 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 201 3e-50 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 200 4e-50 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 200 4e-50 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 200 5e-50 UniRef50_A1B1J0 Phage integrase family protein n=37 Tax=Alphapro... 200 6e-50 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 199 7e-50 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 199 7e-50 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 199 1e-49 UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter seg... 199 1e-49 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 199 1e-49 UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endorif... 198 2e-49 UniRef50_C6I0L0 Phage integrase family protein n=1 Tax=Leptospir... 198 2e-49 UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia ... 198 2e-49 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 197 2e-49 UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum t... 197 3e-49 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 197 4e-49 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 197 5e-49 UniRef50_Q2NB52 Tyrosine recombinase xerC n=5 Tax=Sphingomonadal... 196 6e-49 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 196 1e-48 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 196 1e-48 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 196 1e-48 UniRef50_Q5PBX3 Integrase/recombinase n=6 Tax=Anaplasmataceae Re... 195 1e-48 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 195 2e-48 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 194 2e-48 UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriace... 194 3e-48 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 194 3e-48 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 194 3e-48 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 194 4e-48 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 194 4e-48 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 194 5e-48 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 193 5e-48 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 193 6e-48 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 193 7e-48 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 193 8e-48 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 192 8e-48 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 192 8e-48 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 192 8e-48 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 192 1e-47 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 191 2e-47 UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales ... 191 2e-47 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 191 2e-47 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 191 3e-47 UniRef50_Q2GLS7 Tyrosine recombinase XerD n=6 Tax=Rickettsiales ... 191 3e-47 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 190 5e-47 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 189 9e-47 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 189 1e-46 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 189 1e-46 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 189 1e-46 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 188 2e-46 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 188 2e-46 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 188 2e-46 UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepI... 188 2e-46 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 188 2e-46 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 187 3e-46 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 187 5e-46 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 186 7e-46 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 186 9e-46 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 186 1e-45 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 185 1e-45 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 185 2e-45 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 185 2e-45 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 185 2e-45 UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n... 184 2e-45 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 184 3e-45 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 184 3e-45 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 184 3e-45 UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira Rep... 183 5e-45 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 183 7e-45 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 182 2e-44 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 181 2e-44 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 181 2e-44 UniRef50_UPI000196CAFB hypothetical protein CATMIT_02473 n=1 Tax... 181 2e-44 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 181 4e-44 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 180 7e-44 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 178 2e-43 UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=... 178 2e-43 UniRef50_B3CMG8 Site-specific recombinase, phage integrase famil... 178 2e-43 UniRef50_C9XNU9 Putative tyrosine recombinase n=8 Tax=Clostridiu... 178 2e-43 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 178 2e-43 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 177 3e-43 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 177 3e-43 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 177 4e-43 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 176 6e-43 UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 176 6e-43 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 176 7e-43 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 176 7e-43 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 176 8e-43 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 176 8e-43 UniRef50_Q1NFM1 Integrase n=2 Tax=Alphaproteobacteria RepID=Q1NF... 176 8e-43 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 176 9e-43 UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteria... 176 9e-43 UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteria... 176 1e-42 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 175 1e-42 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 175 2e-42 UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyc... 175 2e-42 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 175 2e-42 UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcu... 174 2e-42 UniRef50_Q9PL53 Tyrosine recombinase xerD n=15 Tax=Chlamydiaceae... 174 2e-42 UniRef50_C7LZA8 Integrase family protein n=1 Tax=Acidimicrobium ... 174 3e-42 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 174 3e-42 UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2... 174 3e-42 UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybac... 174 4e-42 UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia g... 174 4e-42 UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax... 174 4e-42 UniRef50_A3HVT2 Putative site-specific recombinase n=1 Tax=Algor... 174 5e-42 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 173 5e-42 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 173 7e-42 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 173 7e-42 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 172 9e-42 UniRef50_C6XMJ6 Integrase family protein n=1 Tax=Hirschia baltic... 172 1e-41 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 172 1e-41 UniRef50_A4ECJ8 Putative uncharacterized protein n=1 Tax=Collins... 172 1e-41 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 172 1e-41 UniRef50_B9L0I5 Tyrosine recombinase xerD n=2 Tax=Thermomicrobia... 172 1e-41 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 171 2e-41 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 171 2e-41 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 171 2e-41 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 171 3e-41 UniRef50_C0W1H5 Possible integrase/recombinase n=1 Tax=Actinomyc... 171 3e-41 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 171 3e-41 UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID... 171 4e-41 UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella Rep... 171 4e-41 UniRef50_A4X4I7 Phage integrase family protein n=8 Tax=Actinomyc... 170 4e-41 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 170 4e-41 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 170 5e-41 UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychr... 170 6e-41 UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochlori... 170 6e-41 UniRef50_Q83N36 Integrase/recombinase n=2 Tax=Tropheryma whipple... 169 9e-41 UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepI... 169 1e-40 UniRef50_A5VJJ3 Tyrosine recombinase XerD subunit n=8 Tax=Lactob... 168 2e-40 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 168 2e-40 UniRef50_D2NUA7 Site-specific recombinase XerD n=3 Tax=Actinomyc... 168 2e-40 UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales R... 167 3e-40 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 167 4e-40 UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter ... 167 4e-40 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 167 5e-40 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 166 6e-40 UniRef50_C9RKS4 Integrase family protein n=1 Tax=Fibrobacter suc... 166 8e-40 UniRef50_Q8XTL6 Tyrosine recombinase xerC 2 n=1 Tax=Ralstonia so... 166 8e-40 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 166 9e-40 UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alpha... 166 1e-39 UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulos... 164 3e-39 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 164 3e-39 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 164 3e-39 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 164 3e-39 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 164 4e-39 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust. Identities = 204/296 (68%), Positives = 250/296 (84%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 ++LA I+ FL+ W+EK L+ENT+ +YR DL+ + +WL L+L T + DLQ L ER Sbjct: 2 KNLALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGER 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 LE GYKATS+AR+LSA+R+LFQYLYREK+R DDPSA L+SPKLP RLPK L+E QV LL Sbjct: 62 LEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P ++ PLELRDKAMLE+LYATGLRV+ELV LT+ ++S++QGVVRVIGKGNKER+VP+G Sbjct: 122 NTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 EEA YW+ ++ +GRP LLNG S DV+FPSQRAQQMTRQTFWHR+KHYA+LA ID++ LS Sbjct: 182 EEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALS 241 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRHAFATHL+NHGADLRVVQMLLGH+DLSTTQIYTHVA ERL++LH++ HPR Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/296 (68%), Positives = 241/296 (81%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 QD +EQFLDA+W+E+ LAENTL +YR DL +++W+ L LQ + Sbjct: 10 QDFGYVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYL 69 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 ++ YK TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLPQRLPKD+SE QV+ LL Sbjct: 70 VDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALL 129 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 AP + P+ELRDKAMLE+LYATGLRV+ELV LTM +ISLRQGVVRV GKG KERLVP+G Sbjct: 130 DAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMG 189 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E A+ W+ET+++ GRP LL S DV+FPS+RA+QMTRQTFWHRIK YAV+AGID++ LS Sbjct: 190 ENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLS 249 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+Q+H QHHPRA Sbjct: 250 PHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/295 (69%), Positives = 241/295 (81%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D +EQFLDA+W+E+ L+ENTL +YR DLS ++ W+ L LQ Sbjct: 26 DHGLVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLA 85 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + +K TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLP+RLPKDLSE QV+ LL+ Sbjct: 86 DADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLE 145 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP + P+ELRDKAMLE+LYATGLRV+ELV LTM +ISLRQGVVRVIGKG KERLVP+GE Sbjct: 146 APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGE 205 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 AV W+ET++E GRP LL S DV+FPS+RA+QMTRQTFW+RIKHY+V+AGID+E LSP Sbjct: 206 NAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSP 265 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+Q+H QHHPRA Sbjct: 266 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 359 bits (921), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 184/291 (63%), Positives = 220/291 (75%), Gaps = 1/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I+ FLD LW K L++NTL+AYR DL +L +GL L D++A LA R+E + Sbjct: 11 IDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQF 70 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TSSARLLS++RR + YL + K DP A + SPKL + LP LSE+QV+RLL P + Sbjct: 71 ARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPNV 130 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P+E RDKAMLE+LYATGLRVSELVGLTM +SLRQG+VR+IGKG KERLVP+GE A+ Sbjct: 131 DDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEMAIT 190 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 +E YL R LL + DV+FPS+R+Q MTRQTFWHRIK YA AGI++E LSPH LR Sbjct: 191 EVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE-LSPHTLR 249 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA RL++LHQQHHPR Sbjct: 250 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG 300 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 320 bits (820), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 167/294 (56%), Positives = 204/294 (69%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERLE 64 A+I++F D LWLE LA+N+L AYRRDL + WL RG TL A +DD+ A R E Sbjct: 18 AQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARHE 77 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 KATSS R L+ ++R +Q R+ DDP + S K P R+PK LSEAQVE LL A Sbjct: 78 V-TKATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLAA 136 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P + PL LRD+ MLE++YA+GLRV+ELV L ++ + +GV+R+ GKG K RLVP GEE Sbjct: 137 PDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGEE 196 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A W+E YL+ RP +L+G D LF + R MTRQ FW IK +A A I++ LSPH Sbjct: 197 ARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINA-PLSPH 255 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRHAFATHLLNHGADLRVVQMLLGHSD+STTQIYTHVA ERL+ LHQ HHPR Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 308 bits (789), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 167/292 (57%), Positives = 198/292 (67%), Gaps = 4/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 IE F DALWLE L++NTL+AYRRDL++ +WL G ++ L +A R +G Sbjct: 53 IELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDG- 111 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KATSS R LS RR + + RE DP+ L S K P R P LSEAQVE LL AP Sbjct: 112 -KATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPE 170 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + L LRD+ MLE++YA+GLRVSELV L ++ L GVVRV+GKG+KERLVP GE A Sbjct: 171 VGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAH 230 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+E YL RP LL + D LF + R + MTRQ FW+ IK +A+ A I + LSPH L Sbjct: 231 GWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRAH-LSPHTL 289 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RHAFATHLLNHGADLRVVQMLLGHSD+STTQIYTHVA ERLR LH HHPR Sbjct: 290 RHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG 341 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 298 bits (762), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 159/305 (52%), Positives = 202/305 (66%), Gaps = 7/305 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + +D I LDALW++ L+ +TLN+YRRDL + W + R LAT L L Sbjct: 20 LPEDATTIAHCLDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLT 79 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 R + Y S+ARL S +R F Y +R D+PS LA P LP LPK L+E+Q+E Sbjct: 80 WRTQQHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEA 139 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP I+ P LR++AMLE++YA GLRVSELV L ++ ++ RQGV+R+ GKG KERLVP Sbjct: 140 LLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVP 199 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSI------DV-LFPSQRAQQMTRQTFWHRIKHYAVL 233 LGEE+ +WL+ YLE RP L I DV LF + ++++RQ FW IKHYA L Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 GI K+SPHVLRH+FATHLLNHGADLR +QMLLGH +STTQIYT +A + L+QLH Q Sbjct: 260 VGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQ 319 Query: 294 HHPRA 298 HHPR Sbjct: 320 HHPRG 324 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 293 bits (750), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/298 (54%), Positives = 203/298 (68%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + + L+ ++ F D L + + ++ +T NAY DL E H+ L SDD+ +L Sbjct: 14 IPEHLSFLQGFRDYL-VAQTVSPHTRNAYLSDLIQCSEL--HKKNRLPDWTSDDISDVLI 70 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E + G S AR LSA+R+ +++L +K R D+P A SPK+ + LPKDLSE VE Sbjct: 71 ELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEA 130 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+QAP I L LRD+AM EVLYA GLRVSEL+ L + I+L+QG +R+ GKGNKERLVP Sbjct: 131 LIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ A W+E YL RP L S D LF +Q M+RQ FW+ IKHYA+ A I +E Sbjct: 191 LGQYACDWVERYLNEARPQLYKS-STDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE- 248 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA R++QLH++HHPR Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPRG 306 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 159/298 (53%), Positives = 202/298 (67%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + ++L+ ++ F D L + + ++ +T NAY DL E HR +L S+D+ +L Sbjct: 14 IPENLSFLQGFRDYL-VAQTVSPHTRNAYLSDLIQCSEL--HRTASLPQWSSEDIGDVLI 70 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E + G S AR LSA+R+ +++L +K RED+P A SPK+ + LPKDLSE VE Sbjct: 71 ELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEA 130 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+ AP I L LRD+AM EVLYA GLRVSEL+ L + I+L+QG VR+ GKGNKERLVP Sbjct: 131 LINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ A W+E YL RP L + D LF +Q M+RQ FW+ IK YA+ A I +E Sbjct: 191 LGQYACDWIEKYLAESRPQLYKS-NTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE- 248 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA R++ LH Q+HPR Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPRG 306 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 290 bits (741), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 149/291 (51%), Positives = 199/291 (68%), Gaps = 2/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE F+D LW + L++ TL+AYR DL + + L + L +A + + +LA+ + GY Sbjct: 9 IELFIDYLWTQVGLSDATLSAYRGDLQQVQKIL--ADVPLKSATIEQMMQVLAQFHDRGY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS AR+ S++ R F Y +K R ++P L K+ + LP+ +SE+ VE LL AP + Sbjct: 67 SHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDV 126 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L LRD+AMLE+LYA GLRVSELVGLT+ I+L G V+++GKG+KERLVP GE A Sbjct: 127 QTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHE 186 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 WL+ Y++ RP LL D +F SQR ++RQ FW+R+K Y G+DS K+SPH LR Sbjct: 187 WLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLR 246 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HAFA+HLL HGADLR +QMLLGHSDLSTTQIYTH+A +RL+ L +HHPRA Sbjct: 247 HAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 151/291 (51%), Positives = 189/291 (64%), Gaps = 1/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E+FLD L +E LA NTL AYRRDL + + R LTL Q D+ + E + Sbjct: 7 MERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGELAQKSL 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 ++ AR LSA+RRLF++L + R +DP+ + PK ++LP LSEA+ E LL AP Sbjct: 67 TPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALLYAPDT 126 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L +RD AMLE++YATGLRVSELV LT+ + G VRVIGKGNKER+VP+GE A Sbjct: 127 STELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPMGEAATE 186 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 + Y R LL G + LF S R MTR FWH +K YA A I + LSPH +R Sbjct: 187 MVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANI-MKPLSPHGIR 245 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HAFATHLLNHGADLR VQM+LGH+D+STT+IYTHVA RL++LH Q HPR Sbjct: 246 HAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPRG 296 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 147/297 (49%), Positives = 199/297 (67%), Gaps = 7/297 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M++DL I++ L+ LWL++ L+ NTL +YRRDL + L G TL A DL A + Sbjct: 18 MEEDL--IDRLLETLWLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLAAAV- 74 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G + +S AR LSA +RL+ ++ RE R D+P+ L PK+ + +P ++E Q+ R Sbjct: 75 --YVAGEERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISR 132 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP D P LRDKA+LE++YATGLRVSE V L+ ++ L +G + +GKGNK+R+VP Sbjct: 133 LLSAPDTDTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 192 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G E+VYW+E Y + RP LL G S D LF SQ+ ++RQ W +K YA AGI E Sbjct: 193 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGI--EH 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +SPH LRHAFATHL+ HG DLRVVQ +LGH+DL+TTQIYTHVA RL + ++HH R Sbjct: 251 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 157/298 (52%), Positives = 194/298 (65%), Gaps = 4/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + +DLAR FLD LWLE NLA N+L AY RDL ++ +L L A + DL LA Sbjct: 15 VDEDLAR---FLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRRLRDADAADLSLFLA 71 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 +RL+GG S AR LS++RR + + RE +R DDPSA L + + LP SE +V+ Sbjct: 72 QRLQGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDA 131 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP L LRD AMLE LYATGLRVSELVGL S + L GVV +GKG+KERL+P Sbjct: 132 LLAAPDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIP 191 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +GE A+ L YL R LL LF + R + M+RQ FW IK +A AGI S Sbjct: 192 VGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRS-A 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRHAFATHLL+HGADLR VQ++LGH+ L+TT+IYTH+A RL+ LH+QHHPR Sbjct: 251 FSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPRG 308 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/291 (50%), Positives = 194/291 (66%), Gaps = 5/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I++ L++LWL+ L+ NTL +YRRDL + L G +A D AL G Sbjct: 8 IDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSA---DEFALSDSVYAEGE 64 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K+TS AR LSA +R++ +L R D+P+ L +PK ++LP ++EAQ++ LL AP + Sbjct: 65 KSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDV 124 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 + LRDKA+LEV+YATGLRV+E V LT+SDI L +G +R IGKG+K RLVPLG+EA Y Sbjct: 125 ETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEAAY 184 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 W+E Y RP LL D +F SQ+ ++RQ W +K YA AGI S LSPH LR Sbjct: 185 WVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIAS--LSPHGLR 242 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HAFATHL+NHG DLR VQM+LGHSD++TTQIYTHVA RL+ + +HH R+ Sbjct: 243 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSRS 293 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 156/296 (52%), Positives = 196/296 (66%), Gaps = 8/296 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A I +F A+ L + L+ T NAY RDL + E H + LTL + D +Q L A +G Sbjct: 22 AYITEFRQAM-LARGLSTRTRNAYVRDLKL-CETTHSKALTLWS-DMDVMQCLTALDRQG 78 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 T AR+LS++R+ + ++ + RED+P + +PK+ + LPKDLSE VE LL AP Sbjct: 79 KTPRTQ-ARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAP 137 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L LRDKAMLEVLYA GLRVSEL+ L++ ++L G +++ GKGNK RLVPLGE A Sbjct: 138 DTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYA 197 Query: 186 VYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 L+ YL H R L L + +F + + MTRQ FW+ IK YA AGI S+ LS Sbjct: 198 SDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSD-LS 256 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRHAFATHLLNHGADLR VQ+LLGHSDLSTTQIYTHVAT RL+QLH+ HHPR Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPRG 312 >UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria RepID=XERD_NEIMA Length = 291 Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/290 (48%), Positives = 190/290 (65%), Gaps = 5/290 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I++ L+ LWL++ L +NTLN YRRDL + L G L A DL A + G Sbjct: 6 IDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAV---YVDGE 62 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + +S AR LSA +RL+ ++ RE R D+P+ L PK+ + +P ++E Q+ RLL AP Sbjct: 63 QRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDT 122 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P LRDKA+LE++YATGLRVSE VGL ++ L +G + +GKG+K+R+VP+G+E+ Y Sbjct: 123 DTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAY 182 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 W+ Y RP LL G S D LF SQ+ ++RQ W +K YA AGI +SPH LR Sbjct: 183 WVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG--HISPHSLR 240 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 HAFATHL+ HG DLRVVQ +LGH+DL+TTQIYTHVA L+ + ++HH R Sbjct: 241 HAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >UniRef50_UPI00019103C7 site-specific tyrosine recombinase XerD n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E01-6750 RepID=UPI00019103C7 Length = 141 Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 127/141 (90%), Positives = 136/141 (96%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M+QDLARIEQFLDALWLE+NLAENTL+AYRRDLSM+V WLHHRG TLATAQ+DDLQ LLA Sbjct: 1 MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLA 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 ER+EGGYKATSSARLLSA+RR FQ+LYREK+REDDPSA LASPKLPQRLPKDLSEAQVER Sbjct: 61 ERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVER 120 Query: 121 LLQAPLIDQPLELRDKAMLEV 141 LLQAPLIDQPLELRDKAMLEV Sbjct: 121 LLQAPLIDQPLELRDKAMLEV 141 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 257 bits (656), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 142/294 (48%), Positives = 195/294 (66%), Gaps = 9/294 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR---GLTLATAQSDDLQALLAERLE 64 ++ FL+ L +EK A NT++AY RDL+ + +L R G+ + D+ LA+ Sbjct: 5 LDLFLNYLLVEKGAAANTVSAYSRDLNRYLLFLGEREPDGI-----RPSDVTGFLAKLKG 59 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G S AR LSA+R L ++L RE + E +P+A + +PK ++LP LS +VE LL + Sbjct: 60 EGIAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSS 119 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 PL ELRDKAMLE+LYATGLRVSELVGL +S+++L G + IGKG+KERLVP+GE Sbjct: 120 PLDTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGES 179 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A + YL+ R LL + +LF S+ M+RQ FW+ IK A+ AG+ + +SPH Sbjct: 180 ACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTS-ISPH 238 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ++LGH+DLS+TQIYTHV ER+++LH HPR Sbjct: 239 TLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPRG 292 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 255 bits (651), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 129/291 (44%), Positives = 193/291 (66%), Gaps = 4/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +++FL+ L EK L+ NT+ +Y DL ++WL + + + + DD+ L E Y Sbjct: 7 LKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNLKEKAY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +TS AR+LS++++ F+++ + DP+ L SPKL RLPK L +V+RLL ++ Sbjct: 67 SSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSV-ML 125 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 + LRD AMLE++YA+GLRVSELV L +SDI+ G +RV GKG+KER+VP+ + ++ Sbjct: 126 ESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQRSID 185 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 ++ YL RP LL + + +F + R Q MTRQ FW IK +AG++ ++PH++R Sbjct: 186 KIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVN---VTPHMIR 242 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL GADLR +Q +LGHSD+STTQIYT V+ +RLR+ + +HHPRA Sbjct: 243 HSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRA 293 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 188/292 (64%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 IE++L + +EK L+ NT+ AYRRDL +++ ++ + +Q L ++ G Sbjct: 5 IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A S AR +S +R Q+ REK+ DP+ L SPK ++LP L+ +V LL+ P Sbjct: 65 QSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPD 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +++ RD+ MLE+LYATG+RVSEL+ L + +++L G VRV GKG+KER+VPLG+ + Sbjct: 125 LNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAVI 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L TY+E RP LL +VLF + + ++RQ W IK V A I + L+PH L Sbjct: 185 EYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI-KKTLTPHTL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR VQ +LGHSD+STTQ+YTHV+ ++R+++ Q HPRA Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 249 bits (637), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 132/296 (44%), Positives = 184/296 (62%), Gaps = 7/296 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLS----MMVEWLHHRGLTLATAQSDDLQALLAER 62 +I+ F+ + +E+ L++NT+ +Y RDL + E LH T + L Sbjct: 4 QIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVT--RIHIIQYLKHL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G +SAR L+++R Q+L REK + DPS H+ + K + LPK L+ +VERLL Sbjct: 62 KDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P + P RDKAMLE+LYATG+RVSE++ L +D+ L G +R GKG KER+VP+G Sbjct: 122 DTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E A +E Y+ R LL D LF + +Q++RQ FW +K A+ AGI E L+ Sbjct: 182 EAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKE-LT 240 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLL +GADLR VQ +LGH+D+STTQIYTHV RL+ +++Q HPRA Sbjct: 241 PHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 249 bits (636), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 131/292 (44%), Positives = 186/292 (63%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+++L+ L +EK + NTL AY RDLS + RG+ + DD+ +AE G Sbjct: 6 IDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKRKG 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A S R L+A+R +++L REK E +P A + K+ RLP LS ++++LL P Sbjct: 66 LSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQPG 125 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + +RD AMLE++YATGLRVSEL+ LT I+ + G + V GKGNKER+VP+G+ A Sbjct: 126 VRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQVAY 185 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + Y + RP + G +VLF ++ Q MTRQ FW ++ YAV AG+ +K+ PH Sbjct: 186 EHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGL-QKKVHPHTF 244 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA+HLL GADLR VQM+LGH+D+STTQIYTHV E L+ +H+++HPR Sbjct: 245 RHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPRG 296 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/294 (46%), Positives = 186/294 (63%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLT-LATAQSDDLQALLAERLEG 65 IE FL L +E+ L+ NT+ AY RDL V ++ +GLT T + D+ +A + Sbjct: 5 IEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFARQE 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A S AR ++++R F YL + DP + +PK Q LPK L+ VE+LL + Sbjct: 65 GKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLSSS 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 PL LRD+AM+E+LYATGLRV+ELV L M D+ L G ++ IGKG+KER++PLG+ A Sbjct: 125 DTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTA 184 Query: 186 VYWLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 LE YLE RP L D +F + Q +TRQ FW +K A +GI+ + ++PH Sbjct: 185 TTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIE-KPITPH 243 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ LLGH+D+STTQIYTHV RL+ +++Q HPRA Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/294 (43%), Positives = 189/294 (64%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E FL+ L LE+N + NT +Y DL + WLH G+ A D++ + E E G Sbjct: 12 LETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIRKFIQELHEIGL 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +A+S AR +SA+R ++L E+ +P+ ++ PKL + LP L+ ++ LL APL Sbjct: 72 EASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPLK 131 Query: 128 DQP---LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P LRDKAMLE LYATG+RVSEL+GL+ ++ + G VRV GKG+KERLVP+G+ Sbjct: 132 RHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVPVGQT 191 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ W++ YL+ RP +++ S D +F + R ++R W+ ++ +AV+AGI+ + +SPH Sbjct: 192 AISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIE-KPISPH 250 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GADLRVVQ +LGHS + TQIYTH+ ++++H+ HPR Sbjct: 251 TFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPRG 304 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 133/288 (46%), Positives = 183/288 (63%), Gaps = 4/288 (1%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 FL+ +EK L+ N+++AY DL+ V++ G +++ + + G Sbjct: 19 FLNFCRIEKGLSPNSISAYSADLARFVQFT---GDVQEPPGVPEIRQYIDHLYQTGLSNR 75 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 S R L+ +R + +L RE DP+ HL +P+ Q +PK L+ ++ER++QAP + +P Sbjct: 76 SVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAKP 135 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 L LRD+AM+EVLYA+GLRVSEL L + D+ L V+R GKGNK+RLVP+G+ AV + Sbjct: 136 LGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAVR 195 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 YLE GRP LL G + LF + R MTRQ FW + Y AGI L+PHVLRH+F Sbjct: 196 AYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGI-FHGLTPHVLRHSF 254 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ATHLL GADLR VQ++LGH+D+STTQIYTHV RLR ++HHPRA Sbjct: 255 ATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 243 bits (620), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 134/319 (42%), Positives = 190/319 (59%), Gaps = 24/319 (7%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 Q A ++++L L +E+ L+ NT N+Y RDL +L RG + + +DL L + Sbjct: 4 QTEAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQE 63 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A + AR L+ +R F +L E+ REDDP+ +L++PKL Q LP LSE + +L+ Sbjct: 64 KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123 Query: 123 --------QAPL---------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSD 159 + P D+ L +R+ AM+EVLY GLRVSELVGL +SD Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183 Query: 160 ISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMT 219 I +R GKGNKER+VP+GE A+ L+ YLEH R L +VLF + R +T Sbjct: 184 IIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243 Query: 220 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 RQ W +K +A G+ E + PH RH+FATHLL+HGADLR VQ +LGH+D++TTQIY Sbjct: 244 RQGIWDILKKWAQTHGV-QENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIY 302 Query: 280 THVATERLRQLHQQHHPRA 298 TH++ +RL ++ ++ HPRA Sbjct: 303 THLSRQRLLEVFRKAHPRA 321 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 239 bits (611), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 197/293 (67%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +I+ +L +E+ L+ NT+ AYR+DL + ++ G+ ++ D+ A LA + + Sbjct: 9 QIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAFLARQYDLN 68 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S +RL+S++R+ +Q+L R+ ++ +P + PK +RLP L++ ++ LL P Sbjct: 69 KATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEINDLLAQPD 128 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 I + L LRD+A+LE LYATG+RVSEL+ L + D+ G+VRV+GKG+KERL+P+ A+ Sbjct: 129 IKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIPISSVAL 188 Query: 187 YWLETYLEHGR-PWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 +W++ Y + R P +L G + + +F + RA+Q+TRQ W IK Y AGI ++ ++PH Sbjct: 189 HWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGI-TKDVTPH 247 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LRH FATHLL +GADLRVVQ +LGHSD+STTQIYT+++ + + Q++Q+ HPR Sbjct: 248 TLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPR 300 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 238 bits (607), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 192/293 (65%), Gaps = 4/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL-EGG 66 ++ F+D+L ++ L++NT+ +Y+RDL ++L + + L L + L + G Sbjct: 5 LDYFVDSLAIQ-GLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDLKQDG 63 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y +S++R++S +++ F++L +E+ E +P L PK + LPK L+ +V ++L + Sbjct: 64 YATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCD 123 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 L LRDKAMLE+LYATG+RVSEL+ L +SD+ L G ++ IGKGNK+R++P+G+ A Sbjct: 124 TSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAAT 183 Query: 187 YWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 W++ YL + R L + ++ LF + R TRQ FW +K AG+ + +SPH Sbjct: 184 NWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKD-VSPHT 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATH+L GADLR+VQ LLGHSD+STTQIYTH+ ER+++++QQ HPRA Sbjct: 243 LRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRA 295 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 182/298 (61%), Gaps = 16/298 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG-- 65 IE FL + LE+ LA NT+ +YRRDL L +G + D +A+ E+ G Sbjct: 22 IEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQG-------ARDWRAVTGEQAAGWI 74 Query: 66 ------GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 Y S AR LSA+R L +L RE+FR DD +A L+ PK +R+P L+E ++ Sbjct: 75 HSLSSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIA 134 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL AP LRD+A+LE+ Y++GLRVSEL GL + + L G +RV GKG KER+V Sbjct: 135 RLLAAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKERVV 194 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G +A+ L TYL GRP + + LF ++ ++R W +K YA AG+ ++ Sbjct: 195 PIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGL-TK 253 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + PH LRH+FATHLL+ GADLR +Q +LGH+ +STTQIYT V ++RL + H + HPR Sbjct: 254 NVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPR 311 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 237 bits (604), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 191/291 (65%), Gaps = 4/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + F+ + +EK L+ENT+ AY+ D+ + + + ++L + +D+ L E G Sbjct: 8 LNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLWEMKTEGL 67 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K S R++ ++R+ +++L E +++P+ +LA+P LP+ LP L+ +V+ LL + Sbjct: 68 KPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDLLLNSIND 127 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D + +R+KAMLE+LYA GLRVSEL+ L SDI+L +R+IGKG+KERLVP G +A + Sbjct: 128 DDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVPFGNKAKF 187 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 ++ YL+ RP L V+ D +F S+ ++++R FW ++K+ A GI+ + ++PH LR Sbjct: 188 FISIYLKKRRPCL--NVN-DHIFISRLGKKLSRIEFWRQLKNIAKNVGIN-KNITPHTLR 243 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FA+HLL GAD+R VQ +LGH+ ++TTQIYTH+ +R+ Q H++ HPR Sbjct: 244 HSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPRG 294 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 236 bits (603), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 133/293 (45%), Positives = 188/293 (64%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD-LQALLAERLEGG 66 +E +L L +E+NL+ NTL AY DL +++ L G+ A+ S L L E G Sbjct: 11 VEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLGFLRSLAEAG 70 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A S AR AVR LF++L E+ E DP+ +A PK +LP+ LS +V RL+ AP Sbjct: 71 LSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVRLIAAPG 130 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +D PL LRD A+LE +YATG RVSE L +S + L QG+V + GKG+K+R+VPLG+ A+ Sbjct: 131 VDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQRMVPLGDCAL 190 Query: 187 YWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 L +LE GRP L+ + +F ++R +++RQ + R++ +AV AGI + +SPH Sbjct: 191 VALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGI-TRDISPHK 249 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHL+ GADLR VQ LLGH+D+STTQ+YTH++ +R + HHPRA Sbjct: 250 LRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 236 bits (603), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 120/290 (41%), Positives = 184/290 (63%), Gaps = 4/290 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++E FL L EKN++ T+++YRRDL + +L G+ + + ++ Q L L Sbjct: 4 KLEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVA-LYKK 62 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 YK S AR +S++R ++L RE + + S + PK+P LP+ L ++E L+ P Sbjct: 63 YKIKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFLKIPD 122 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 PL +R+ A+LE YATG+RVSELV L + ++ L + VR GKG KER+VPLG+ AV Sbjct: 123 PLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLGDYAV 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YL L N + LF +++ +++TRQ W IK Y+ + G+ +K+SPH Sbjct: 183 ESLKRYLSVRH--LFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGL-PKKVSPHTF 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 RH+FATHLL++GAD+R+VQ LLGHSD++TTQIYTH+ + +L +++Q+ HP Sbjct: 240 RHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHP 289 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 236 bits (601), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 184/292 (63%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I FL+ L +E LA NT +Y RDL + W+ L + +D+ A + Y Sbjct: 14 INLFLEYLTVELGLAYNTRESYGRDLRLFAGWIKK---PLEDVKREDILAYMRMLKVHQY 70 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS++R L+A++ F+++ E F E+DPS + + LPK +S +V++L AP + Sbjct: 71 APTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDL 130 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 QP RD+ MLEV+YATG+RVSEL+ L + ++L V GKG KERL+PLG+ A+ Sbjct: 131 TQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQ 190 Query: 188 WLETYLEHGRP-WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L+ YL RP ++ NG D LF + R MTRQ FW I+ Y V AG+ + L+PH+L Sbjct: 191 YLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGL-QKPLTPHIL 249 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L++GADLR VQ LLGH+D+STTQIYTH+ RL+++ + HPRA Sbjct: 250 RHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/293 (41%), Positives = 193/293 (65%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQALLAERLEG 65 IE F+ L EK LA N+ AY+RDL ++L + R L+ D+ A LA +L+ Sbjct: 5 IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G +S AR LS+++ +++L E + +PS+ L +PK+ ++LP+ LS +V++L++ P Sbjct: 65 GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 PL +RD+AMLE++Y TG+RVSEL+ L + D++ G +R +GKG KER++P+ + + Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + W++ YL R L+ LF + R + ++RQ F+ + +Y A ++ E ++PH Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKE-VTPHT 243 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ +LGH+D+STTQIYTH+ RLR+++QQ+HPR+ Sbjct: 244 LRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 187/294 (63%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 A +E+F++ L +K L+ NTL +Y+RD+ + +L +T + + A L + Sbjct: 3 ANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQK 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++ +R L+++R +Q+LY++K ++DP++ L SPK+ ++LP+ LS +VE LL Sbjct: 63 KGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLDQ 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P +RDKAMLE+LYATG+RVSEL+ L + DI+ G+++ KG +ER +P+G Sbjct: 123 PKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKC-NKGTRERTIPIGSI 181 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + + YLE R +L+ LF + +++TRQ FW IKHY A I+ + ++PH Sbjct: 182 STAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKD-ITPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA HLL +GADLR +Q +LGHSD+S+TQIY +A +++ ++++ HPRA Sbjct: 241 TLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 128/292 (43%), Positives = 177/292 (60%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I F+D L +E LA NT +Y RDL + W+ + DD+ ++ Y Sbjct: 11 IALFMDYLTVEMGLARNTRESYGRDLRLFAVWVKK---PIKEISRDDILTYMSVLKAQNY 67 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TSSAR L+A++ F+++ E E DP + S LPK LS +V RL +AP + Sbjct: 68 AVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDL 127 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P RD+ MLEV+YATG+RVSEL+ L + ++L V GKG KERL+PLG A+ Sbjct: 128 DTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIE 187 Query: 188 WLETYLEHGRP-WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L+ YL RP ++ D LF + R MTRQ FW IK+Y + I ++ L+PH+L Sbjct: 188 YLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHI-AKSLTPHIL 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L++GADLR VQ LLGHSD+STTQIYTH+ RL+ ++ + HPRA Sbjct: 247 RHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 122/296 (41%), Positives = 178/296 (60%), Gaps = 5/296 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++EQF++ L +NL+ENTL +Y+ DL +W + L +L+ LA + Sbjct: 10 QVEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQ 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y A + R LSA+R ++++ REK DP+ L++P+ P+ LP ++++ V RLL++ Sbjct: 70 YSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCD 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + LRD+A LE LYATG R+SE+ L + + L+ G VR+ GKG+KER+VPL E A+ Sbjct: 130 VSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAI 189 Query: 187 YWLETYLEHGRPWLL----NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 WL+ YL RP LL G LF S R M+ + Y AG+DS LS Sbjct: 190 EWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSS-LS 248 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH +RH +AT LL GADLR+VQ LLGH LSTTQ+YTH++ +RL++ + HPR+ Sbjct: 249 PHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRS 304 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 129/295 (43%), Positives = 181/295 (61%), Gaps = 8/295 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL---- 63 ++ F DAL +E+ + T+ AYRRD+ + G+T A D A L E + Sbjct: 22 LQAFEDALQIEEGASPRTIEAYRRDVIRCAAQMRAMGITQA---KDITPAALREFVYHLK 78 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + G +S R +SA+R F+ + E DP+ L SP+ + LP+ LS +V RLL Sbjct: 79 DLGLAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLA 138 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP +D+ L RD+AMLE+ Y GLRVSE +G+++ D+ L +VRV+GKGNKERLVP+G Sbjct: 139 APGLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGR 198 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ + YL RP L G +LF + R ++R W ++ Y +AGI+ + +SP Sbjct: 199 SAIGAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIE-KPVSP 257 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL GADLR VQ +LGH+D++TTQIYTHV E LR +H+Q HPRA Sbjct: 258 HTLRHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >UniRef50_Q89XW5 Tyrosine recombinase xerD n=10 Tax=Alphaproteobacteria RepID=XERD_BRAJA Length = 318 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 142/303 (46%), Positives = 188/303 (62%), Gaps = 15/303 (4%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 FLD L E+ NTL+AYRRDL+ E+L G + A A++ L+ LA+ G+K+T Sbjct: 14 FLDMLAAEQGAGPNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKST 73 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ------- 123 S AR LSA+R L+++L E+ R DDP+A L+ PK + LPK LS A V+R+L+ Sbjct: 74 SVARRLSAMRHLYRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVDRMLRRARELSE 133 Query: 124 ---APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 A + LR +LEVLYATGLRVSELV L + ++ V GKGNKERLVP Sbjct: 134 AEDASPSKRLRALRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVRGKGNKERLVP 193 Query: 181 LGEEAVYWLETYL---EHGRPWLLNGVSIDV-LFPS-QRAQQMTRQTFWHRIKHYAVLAG 235 L E + + YL E + GV+ LFPS + +TRQ F +K AV +G Sbjct: 194 LNEASRQAMADYLAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKELAVASG 253 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + + +SPHVLRHAFA+HLL++GADLR+VQ LLGH+D+STTQIYTHV ERL+ L + H Sbjct: 254 LQARLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEERLKSLVRDLH 313 Query: 296 PRA 298 P A Sbjct: 314 PLA 316 >UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteobacteria RepID=XERD_AGRT5 Length = 331 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 140/317 (44%), Positives = 189/317 (59%), Gaps = 22/317 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 +D AR+E FL+ + E+ A NTL++Y DL+ + E+L RG +L AQ+ DL A L Sbjct: 9 RDGARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHL 68 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G+ ATS AR LS++R+ +++LY E R DDP+ + +P+ LPK +S A V RLL Sbjct: 69 AAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLL 128 Query: 123 ----QAPLIDQPLEL---RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 Q + P +L R +LE+LYATG+RVSELV L + + + + GKGNK Sbjct: 129 GLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNK 188 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-------------LFPSQRAQ-QMTRQ 221 +R+V L A+ +E Y E GR L S LFPS + + RQ Sbjct: 189 DRMVLLSRAAIEAMEKY-EAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQ 247 Query: 222 TFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 281 F +K A+ AG+ + +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTH Sbjct: 248 VFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307 Query: 282 VATERLRQLHQQHHPRA 298 V ERL++L Q HHP A Sbjct: 308 VLEERLQELVQTHHPLA 324 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 187/297 (62%), Gaps = 9/297 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + FLD L +EK L+ +++AY +D+ E+L R +L A+ D++ L Sbjct: 11 LRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDSLFSNQL 70 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP-- 125 + AR LS+ R+ ++YL ++ E DP+ ++ SP+ + LPK LS +V + LQ P Sbjct: 71 DGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQGPPR 130 Query: 126 LID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 ++D Q L LRD+AMLEV YA LRVSE++G+ M D L G + V GKG+KER+VPL Sbjct: 131 VLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERIVPL 190 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G+ A+ +++YLE GR L G + +LF + ++++RQ W + + +G Sbjct: 191 GQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASG---RHA 247 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH+LRH+ ATH++ +GADLR VQ +LGH+D+STTQIYTH+A +RL+Q+H+ HPR+ Sbjct: 248 SPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRS 304 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 132/291 (45%), Positives = 172/291 (59%), Gaps = 9/291 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I L L + + + T ++YR DL + +L A + LA+ G Sbjct: 12 ITGLLQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLAKLGRDGM 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K T+ R SA+ F +L + RED P+ HL + + LPK +SE VERLL AP Sbjct: 72 KPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLLAAPET 131 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 + P+ LRD+ MLE+LYATG+RVSELV LT + + G++RVIGKG+KERL+P GEEA Sbjct: 132 EDPVGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPFGEEAGQ 191 Query: 188 WLETY--LEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 WL+ + L +P + LF + MTRQ FW RIK YA +AGI SPH Sbjct: 192 WLQQWLLLRPAKP------ASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLP-SPHT 244 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 LRHAFATHLLNHGADLR VQMLLGH+ ++TT+IYTHV+ R+ L HP Sbjct: 245 LRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHP 295 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 117/289 (40%), Positives = 180/289 (62%), Gaps = 3/289 (1%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKA 69 FLD L +K L+ NTL +Y+RD+ + +L + +A + A L + G Sbjct: 10 FLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRAT 69 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 ++ +R L+++R +QYL ++ DP+ +L SPK+ ++LP+ LS +VE LL+ P D Sbjct: 70 STISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDD 129 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 RDKAMLE+LYATG+RVSEL+ L + D++L +R KG +ER+VP+G +V L Sbjct: 130 LKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRC-NKGARERIVPIGSVSVNAL 188 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 + YL R L+ LF + +++TRQ FW IK Y A I+ + ++PH LRH+ Sbjct: 189 QEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKD-ITPHTLRHS 247 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FA HLL +GADLR +Q +LGHSD+S+TQIY +A R+++++++ HPRA Sbjct: 248 FAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 226 bits (575), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 122/293 (41%), Positives = 177/293 (60%), Gaps = 6/293 (2%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG---- 66 F+ L LE+ L+ NTL AYR DL +L G + DL A + GG Sbjct: 22 FIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGDLAAFVGALAAGGDGRA 81 Query: 67 -YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 AT+ R ++ +R +++L RE+ + DP+A L P ++LPK LS +V+ LL P Sbjct: 82 PAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEVQHLLSQP 141 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 P LRD+A+LE++YA GLR SE V + + ++ + G++R GKGNKERLVP+G +A Sbjct: 142 RGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGNKERLVPIGSKA 201 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L YL GRP ++ +F +QR +TRQ + ++ +A AG+ +K+SPH Sbjct: 202 LDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTAGL-GDKMSPHT 260 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLL G DLR +Q +LGH+D++TTQIYTH++ ERLR ++ HPRA Sbjct: 261 LRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRA 313 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 6/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALL 59 ++QD+ R F D L EKN + +T+ +Y+RDL + +L +G+ + + L + + Sbjct: 11 IQQDMRR---FADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYI 67 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + + G+ +S +R ++++R F +L + K +DPS +L +P + ++ P+ L+ + Sbjct: 68 LQMEKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETV 127 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +LL P +D +RDKAMLE+LYATG+RVSEL+ + ++D+++ G V + +KER++ Sbjct: 128 QLLNQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYV-LCRDSDKERVI 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P G EA L+ YLE R LL G + LF + + M+RQ FW IK Y+ AGI ++ Sbjct: 187 PFGTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGI-TK 245 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+F HL+ +GADLR VQ ++GHSD+STTQIY + R+R+++ + HPR Sbjct: 246 DITPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPRG 304 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 225 bits (574), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 185/291 (63%), Gaps = 1/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE+ L L +E++ A NT YR+ L ++W+ L++ + +S ++ L E + G Sbjct: 14 IEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHIELFLDEERKRGL 73 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S + A+R LF+YL + + +P H P + RLP+ L+ ++E+LLQAP Sbjct: 74 SDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPFP 133 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D PL RDKA+LE+LY++GLRVSEL+ L + ++V+GKGNKER VP+G+ A Sbjct: 134 DTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGKCAKE 193 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ Y+ GR LL + +F +QR Q +TR I HYA L GID +K+ PH+LR Sbjct: 194 ALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGID-KKVYPHLLR 252 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H FA+HL+ +GADLRV+Q LLGH++++TTQIYTHV + L+++H++ HPR+ Sbjct: 253 HTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_Q98FX8 Tyrosine recombinase xerD n=2 Tax=Mesorhizobium RepID=XERD_RHILO Length = 305 Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 183/310 (59%), Gaps = 27/310 (8%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDL----SMMVEWLHHRGLTLATAQSDDLQALLAE 61 ARIE FL+ + E+ AENTL++YRRDL S + L A DD+ AE Sbjct: 5 ARIEAFLEMMSAERGAAENTLSSYRRDLEDASSGIDGGLAGAAAADIRAYLDDI----AE 60 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 R G+ TS AR LSA+R+ F++LY E R DDP+ L SPK + LPK +SEA+ RL Sbjct: 61 R---GFAPTSQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRL 117 Query: 122 LQAPLI----------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 + + D+ LR A++EVLYATGLRVSELVGL ++ V G Sbjct: 118 IDRAAVEAGDAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRG 177 Query: 172 KGNKERLVPLGEEAVYWLETYL--EHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIK 228 KG+KER+VPL +A + +L G P + LFP+ + ++RQ F +K Sbjct: 178 KGDKERMVPLSAKARVAMRAWLAARAGVPAFADS---PFLFPAASDSGYLSRQVFARDLK 234 Query: 229 HYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 A AGI S K+SPHVLRHAFA+HLL +GADLR VQ LLGH+D+STTQIYTHV ERL Sbjct: 235 GLAARAGIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLV 294 Query: 289 QLHQQHHPRA 298 +L HHP A Sbjct: 295 RLVNDHHPLA 304 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 118/291 (40%), Positives = 179/291 (61%), Gaps = 2/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I F+ L +E+ LA T +Y++DL+ + WL + T +QA L + + Sbjct: 5 IADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTKA 64 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 A+ S R++SA+R+ +++L RE + DP + +PK Q LP LS +++ L+ P Sbjct: 65 PASVS-RMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDT 123 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 +PL LRD+A+ E++YATGLRVSE+VGL + + L +++V GKG+KERLVP+ +A Sbjct: 124 TKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAAD 183 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 W+ YL+ RP L+ +F + +TRQ W +K Y GI+ + ++PH LR Sbjct: 184 WVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKD-VTPHTLR 242 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FAT LL +GADLRVVQ LLGHSD+STTQIYTH++ + L ++ + HPR Sbjct: 243 HSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG 293 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 119/298 (39%), Positives = 188/298 (63%), Gaps = 8/298 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH---RGLTLATAQSDDLQALLAERL- 63 I+ FL+ L +EK +ENT AY DL M+ + + + ++ Q +LA L Sbjct: 5 IQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLD 64 Query: 64 --EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 E Y T+ R ++A + F ++ E +++P+ ++++PK+ + LP +S +QV L Sbjct: 65 LKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRAL 124 Query: 122 LQAPLIDQPLEL-RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L P+ E RDKAMLE+LYA+G+RV+ELV L + D+ L++G VR GKG KER++P Sbjct: 125 LNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKERMIP 184 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 + +A ++ YL RP L+ + LF ++R ++TRQ W +K YA AG+D + Sbjct: 185 IYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLD-DV 243 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+FATH+L+ GADLR VQ LLGH+++STTQIYTH+ +E +++ +++ HPRA Sbjct: 244 VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPRA 301 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 138/321 (42%), Positives = 188/321 (58%), Gaps = 32/321 (9%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--------------------HHRGLTL 47 ++ FL L E+ LA NTL AY+ DL +L RG L Sbjct: 38 LDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRGAGL 97 Query: 48 ATAQS---------DDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSA 98 A+A+ + L+A LA + S++R +SA+R F++L E+ DP+A Sbjct: 98 ASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPAA 157 Query: 99 HLASPKLPQRLPKDLSEAQVERLLQAPLIDQP-LELRDKAMLEVLYATGLRVSELVGLTM 157 L PK+ + LPK LS A+VE+LL P L LR+ AML +LYATG+RVSELV L + Sbjct: 158 LLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKLPV 217 Query: 158 SDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQ 217 + ++ + G +R++GKG+KERLVP GE A + Y+ RP LL D LF + R Sbjct: 218 AAVN-QAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGTA 276 Query: 218 MTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQ 277 MTR FW ++ A GI E +SPHVLRH+FATHLL HGADLR VQ++LGH+D++TTQ Sbjct: 277 MTRLRFWQIVRKSARERGIARE-ISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQ 335 Query: 278 IYTHVATERLRQLHQQHHPRA 298 IYTHV T RL+ +H++ HPR Sbjct: 336 IYTHVDTNRLKAIHRKFHPRG 356 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 223 bits (567), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 129/296 (43%), Positives = 179/296 (60%), Gaps = 6/296 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 ++E FL L E+NL+ NT+ AYR DL E+LH R L DD+ A L + E Sbjct: 4 QVEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRER 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y +++ AR ++AV+ F +L + DP+ + SPK+ + LP+ L+ QV+ LL+ P Sbjct: 64 RYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLELP 123 Query: 126 LID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 L P +RDKAMLE+LYATG+RVSELV L ++D+ L + VR IGK + R++P+ Sbjct: 124 LRSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPINGS 183 Query: 185 AVYWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 A LE Y + R L +G S + LF + R +++TRQ FW +K YA G+ L+ Sbjct: 184 AATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLSD--LT 241 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+FA H+LN G DLR VQ LLGH+ +STTQIYTH+ E H PRA Sbjct: 242 PHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRA 297 >UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacteraceae RepID=C7JEV7_ACEP3 Length = 306 Score = 222 bits (566), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 136/299 (45%), Positives = 181/299 (60%), Gaps = 13/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL+ L E+ A NTL AY DL+ E L G TL TA ++ LQ +A + G Sbjct: 6 VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA--- 124 + AR LS +R+ + +L RE R D+P+AHL SPK LP+ LSE++V LL A Sbjct: 66 ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAE 125 Query: 125 ----PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L + + KA LE+LYA+GLR+SEL+ L I+ Q ++ V GKG +ERLVP Sbjct: 126 PAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAGIDSE 239 L + A + LE + + LFP + A+ MTRQ F + A+ A ID Sbjct: 186 LSDSAREAAQALLE-----VDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPA 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LSPHVLRH+FATHLL HGADLR +QMLLGH+D++TTQIYTHV TERL++ Q HHP A Sbjct: 241 RLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLA 299 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/293 (43%), Positives = 177/293 (60%), Gaps = 4/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQAL--LAERLEG 65 I++++ L LE+ LA+N+L +Y DL+ ++L ++ A Q D + L L Sbjct: 5 IDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQIS-ALDQVDTVVILAWLVHLEAK 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S AR L AVR +++L E +P + PK RLP+ LS+ QV LL+ P Sbjct: 64 GLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLEMP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 LR+ AMLE+LY GLRVSELVGL + L VR+ GKG++ER+VP G A Sbjct: 124 DRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGSHA 183 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +LE GRPW+L + LF ++ MTRQ FW +K YA+ AGI S K+SPH Sbjct: 184 RQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGI-SIKVSPHT 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GADLR VQ +LGH+D+++TQIYTHV+ + L +H+++HPR Sbjct: 243 LRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPRG 295 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/292 (45%), Positives = 180/292 (61%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQALLAERLEGG 66 ++ FL + +EK LAEN++ AY RDL +E L G+ ++QA LAE + G Sbjct: 24 LDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHLAELVRRG 83 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S AR LSA+R L + L E+ DPS + SP+ +RLP LS +V+RLL AP Sbjct: 84 LSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPD 143 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + +RD+AMLE+LYATGLRVSELV L ++D++L V+ GKG+KER+VP+G A Sbjct: 144 VRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGAPAA 203 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL R LL+G LF + R +MTRQ F +I ++SPH L Sbjct: 204 DAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFA-KILDRCARRAGIRRRISPHKL 262 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GADLR VQ +LGH+D+STTQIYTHV +++L+ + HPRA Sbjct: 263 RHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 188/300 (62%), Gaps = 10/300 (3%) Query: 4 DLAR-IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 DLA ++ +LD L +E+ LA TL AY DL+ +V G+T T + D Q+L+ Sbjct: 29 DLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGIT--TVEGLD-QSLIGTY 85 Query: 63 L----EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L + G A+S+AR LSAVR ++L RE+ E DP A + P++ +RLPK LS ++ Sbjct: 86 LVALGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEI 145 Query: 119 ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 L++AP LRD+AML V+YA GLRVSE+V L ++DI R+G+V +GKG K RL Sbjct: 146 ALLIEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRL 205 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VPLGE A+ ++ YLE R + VLF S R +TRQ W + YA GI + Sbjct: 206 VPLGEPALAAIDAYLEL-RATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGI-A 263 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + SPH LRH+FATHLL GADLR VQ LLGH+++ TT+IYTH+A + +R +++ HPRA Sbjct: 264 KPSSPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_B3PPF3 Tyrosine site-specific integrase/recombinase protein n=29 Tax=Alphaproteobacteria RepID=B3PPF3_RHIE6 Length = 383 Score = 220 bits (560), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 142/320 (44%), Positives = 190/320 (59%), Gaps = 35/320 (10%) Query: 3 QDLARI--EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 +DL R+ E FL+ + E+ A NTL +Y RDL + +L+ R + L A S DL A LA Sbjct: 68 RDLGRVHVESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLA 127 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G+K +S AR L+A+R+ +++LY E R DDP+ L +PK + LPK + +V R Sbjct: 128 SLARQGFKPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSR 187 Query: 121 LL---QAPLID-QPLELR---DKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 LL QA D P +L+ A+LE+LYATG+RVSELV L + + + GKG Sbjct: 188 LLSQAQAEADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKG 247 Query: 174 NKERLVPLGEEAVYWLETYLEHGR---------------PWLLNGVSIDVLFPSQRAQQM 218 NKERLVPL + A+ L++Y GR P+L + S + P Sbjct: 248 NKERLVPLSQSAIKALKSY---GRLLAAENAAAKEPQESPFLFSAASKEGYLP------- 297 Query: 219 TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 278 RQ F +K+ A+ AG+ +SPHV+RHAFA+HLL +GADLRVVQ LLGHSD+STTQI Sbjct: 298 -RQVFARDLKNLAIRAGLTPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQI 356 Query: 279 YTHVATERLRQLHQQHHPRA 298 YTHV ERL+QL Q HHP A Sbjct: 357 YTHVLEERLQQLVQTHHPLA 376 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 181/291 (62%), Gaps = 1/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ F + L +EK L++N++ +Y DL+ +L + Q+DD+ L E + Sbjct: 9 LQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNEEKDRKI 68 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + + AR + A+R+ +++L EK + +P+ + +P++ + +P L++ ++E L + Sbjct: 69 SSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIKE 128 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D ELRDK + E+LY++GLR+SE L ++D+ L + V GKG ++RLVP GE+++ Sbjct: 129 DNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGEKSLD 188 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L YL+ RP++L + + LF S++ + R++ W + HY I +K++PH LR Sbjct: 189 ILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSI-LKKVTPHTLR 247 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL + ADL+ VQ LLGH D++TTQIYTH+A + LR++H++ HPR Sbjct: 248 HSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPRG 298 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/296 (40%), Positives = 179/296 (60%), Gaps = 7/296 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 E+FL + +E+ + T+ AYRRDL +L + + + QS ++ +A G Sbjct: 8 ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKA 67 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 A S AR+ +AVR + +YL E+ R D+P++ + K+P +PK LSE +V R+L + Sbjct: 68 AKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGV 127 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 LRD+A+LE LYATG R+SE GL++SD+ + +VR+ GKG+KER+VP G A Sbjct: 128 DSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAA 187 Query: 189 LETYLEHGRPWLLNGVS------IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 LE +L G +L D +F R +++RQ W ++ +A +A + E +S Sbjct: 188 LEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEVGDE-VS 246 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+ ATH+L HGADLR+VQ LLGH+ +STTQ+YT V E L ++++ HPRA Sbjct: 247 PHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 183/292 (62%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 ++L+ L +EKN++ TL YR DL V +L + ++ L+ ++ + G Sbjct: 5 FNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S AR LSAVR ++YL RE + +P+ + +SP+L +RLP+ L+ A+V +LL+ P Sbjct: 65 IVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPD 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 P LRDKA +E+LYA+GLRVSELV L + ++ L +RV GKG+KER+V +G A+ Sbjct: 125 SSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAI 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++TYL GRP L + LF + +++ ++F R+ A AGI+ + + PH+L Sbjct: 185 QSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIE-KHVHPHML 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH FATHLL+ GADLRVVQ LLGHS+LSTTQIYTHV + R+++ HP A Sbjct: 244 RHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLA 295 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 173/289 (59%), Gaps = 3/289 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 ++LD L E+ L+ NT+ AY++D+ + + G + + + + + G + Sbjct: 12 KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRKRGDSS 71 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 + AR LS++R F + E +P+ + PKLP LP LS+ ++ RLL P I Sbjct: 72 RTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDITN 131 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 L RDK +LE+LYA+G+RVSEL+G+ + D +G+++V GKG KER +PL A+ L Sbjct: 132 KLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKLL 191 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 Y++ RP + + LF ++ + +TRQ W IK YA+LA I+ + +SPH RH Sbjct: 192 IHYVQKIRP-MFTPIE-KFLFLNRSGKGLTRQAIWKIIKRYALLASIN-KSISPHTFRHT 248 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR VQ+LLGH D+S T++YTHV ++RL+ +H HPR+ Sbjct: 249 FATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRS 297 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 182/291 (62%), Gaps = 5/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL+ L LE+N + NT+ AY RD+ E+L G + + DL+ L + L Sbjct: 5 LKAFLNYLLLERNYSPNTIAAYERDILDFQEFLQ--GKSFLSVNEVDLKQFLVDILRKNR 62 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 ++AR + A+R +++L R F +++P+ L PK+P+ LP+ L+ +V ++++ Sbjct: 63 SRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQEN 122 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 P LR++A+LE+ Y GLR+ E+ GLT++D+ L QG VRV GKG ++R+VPLG+ A+ Sbjct: 123 STPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYALD 182 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ YLE GRP + LF +Q+ +T + + I AG++ K++PH R Sbjct: 183 SLKLYLEAGRPAF--KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLN-RKITPHTFR 239 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H++ATHLL GAD+R VQ LLGH LSTT+IYTH++ ERLR+++ + HPR+ Sbjct: 240 HSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRS 290 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/284 (38%), Positives = 172/284 (60%), Gaps = 1/284 (0%) Query: 15 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSAR 74 L E+ L EN++ +Y++DLS ++ + L + L G S Sbjct: 19 LRTEQGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSNNSIVH 78 Query: 75 LLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELR 134 ++S++R+ F YL ++ + DP + +PK LP+ L+ ++E +L P I L LR Sbjct: 79 MVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDISTTLGLR 138 Query: 135 DKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLE 194 ++A+LE +YATG RVSE+ L ++D+ G++ IGKG K+R+VP+GE ++ ++ Y + Sbjct: 139 NRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYISKYFK 198 Query: 195 HGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHL 254 RP LL LF + +++RQ + +K A+ AGID + +SPH LRH+FAT+L Sbjct: 199 ESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKD-ISPHTLRHSFATNL 257 Query: 255 LNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 L +GADLR+VQ LLGHSD+STTQIYTHV+ + +R+ + + HPRA Sbjct: 258 LENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRA 301 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/294 (39%), Positives = 177/294 (60%), Gaps = 4/294 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEW--LHHRGLTLATAQSDDLQALLAERLE 64 +I+ F L E+N ++NTL+AY RD+ + ++ H G +++Q L + + Sbjct: 7 KIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEYLFQLSK 66 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 + S AR +S+++ F+YL ++ RED+P+ L SPKL LP LS VER+++A Sbjct: 67 QKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIKA 126 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 I L R++ M+EVLY GLRVSEL+ L +S+I+ ++ ++V GKG+K R VPL Sbjct: 127 INISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLATY 186 Query: 185 AVYWLETYLEHGRP-WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 ++ Y++ R + +N DVLF + R M+R + IK AGI+ +K+SP Sbjct: 187 TAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN-KKISP 245 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H RH+FATHLL +GADLR +Q +LGHS ++TT+IYTH+ E LR + HPR Sbjct: 246 HTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPR 299 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 182/292 (62%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IEQ+ A +KNL+ NT++AYRRD+ E+L +G L + + + + G Sbjct: 5 IEQYF-AEIRKKNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKNGR 63 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S R + ++R F+YL + +D+P PK+ + P L+ +VE+LL P Sbjct: 64 ANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPDG 123 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 + +RDKAMLE++YATG++V+EL+ LT+ DI+L+ ++ G NKER++P+G AV Sbjct: 124 NTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAVK 183 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 LE YL+ LN +ID LF + + +MTRQ FW IK YA +GI +K++ + LR Sbjct: 184 CLEIYLKVRTK--LNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGI-KKKINAYTLR 240 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE-RLRQLHQQHHPRA 298 H+FA HLL +GAD++ +Q LLGHSD++TTQIY+ + + R+ +++++ HPRA Sbjct: 241 HSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/298 (41%), Positives = 172/298 (57%), Gaps = 8/298 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E F+ L +NL+ NT AY DL V WL L L++ LA+ Y Sbjct: 46 MESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHKQLRSYLAQLYAARY 105 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + + R LSA+R +++L R+ + D +A LASPK+P+ LP LSE+ +E+LL Sbjct: 106 ASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLATCQE 165 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D LRD+A+LE+LYATG R+SE L +SDIS VR+ GKG+KER+VP+ E Sbjct: 166 DTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYPECAR 225 Query: 188 WLETYLEHGRPWLLNGVSIDV-------LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 L YL RP LL+ +F S R + M+ Q + +HY L+ + E Sbjct: 226 ILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHLQ-EI 284 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PH +RH+FAT LL+HGADLR VQ LLGH+ L+TTQIYTHV+ L+ ++ +PRA Sbjct: 285 ATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPRA 342 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 183/292 (62%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I+ F++ L +E A NT++ Y+ DL + +++L + + +T + + + + + G Sbjct: 5 IDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEKHRG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S R + ++R +++L E + +P L SPKL ++LP + ++E LL A Sbjct: 65 QSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLSAAD 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + L +R+KA+LE+LYATG RVSE+ ++++ I+L G ++ GKG+KER+VPLG++A Sbjct: 125 VKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGKKAS 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL RP + + + LF S+ + + R+ W +K+ A+ AGI +E +SPH L Sbjct: 185 IAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGI-TEAISPHKL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR VQ +LGH +STTQIYTHV + L+ +HQ+ HPRA Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 184/295 (62%), Gaps = 6/295 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQ--SDDLQALLAERLEG 65 I QF D L LE++L+ N++ AY D+ +++L ++ Q +Q L E Sbjct: 7 IRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITEL 66 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A S AR+LS ++ F++L E+ R++DPS+ + SPKL ++LP LS ++E++L A Sbjct: 67 GMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLAI 126 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + P +R++AMLE LY+ GLRVSEL L +S++ G V+V+GKGNKERLVP+G +A Sbjct: 127 DLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRDA 186 Query: 186 VYWLETYLEHGRPWL--LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 ++ Y R L + G + +F ++R +++R + IK+ AV G+ + +SP Sbjct: 187 RKYIGMYRNEVRCHLDIVKGAE-NYVFLNRRGNKLSRVMVFTIIKNLAVKIGL-KKTVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H RH+FATHL+ GADLR VQ +LGH ++TT+IYTH+ + L+Q+ + HPR+ Sbjct: 245 HTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 179/298 (60%), Gaps = 11/298 (3%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR---GLTLATAQSDDLQALLAER 62 A ++FL L E +LA+NT+ AY RD+ V W+ R LT+ T SD + +L E Sbjct: 34 AVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADLTI-TELSDFVASLHGE- 91 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G S +R + A+R F+YL E D+P+ LA+ K QR+P LS +VE L Sbjct: 92 ---GLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFL 148 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 A RD+A+LEVLYATG R SE+ L + D++L + +R GKG+K+R+VP+G Sbjct: 149 SAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIG 208 Query: 183 EEAVYWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 A+ ++ YLE R L N ID LF S+ + + R W +K YA AGI S++ Sbjct: 209 GRAIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGI-SDE 267 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH+FATHLL GADLR VQ +LGH+ + TTQIYTHV RL+++H+ HPRA Sbjct: 268 ISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 213 bits (542), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/292 (43%), Positives = 180/292 (61%), Gaps = 9/292 (3%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQ-SDDLQALLAERLEGGYK 68 F D L E +LA NT+ AYRRDL WL R + TL + SD + L E L Sbjct: 5 FTDYLQSECHLAANTVAAYRRDLVRFERWLGAREIRTLRVGELSDYVAWLYKEEL----A 60 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 S AR + +++ F+YL E +D+ L S K+ +R+P ++ +++ LL AP + Sbjct: 61 PASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWSE 120 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 P RD+A+LEVLYATG R SE+ GL M D+ L +G V+ GKG+K+R+ PL +++ Sbjct: 121 DPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSARV 180 Query: 189 LETYLEHGRPWL--LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++TYL+ RP L N LF S+ ++++R W +K YA AGID + +SPH L Sbjct: 181 VKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPD-VSPHSL 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GADLR VQ ++GH+ ++TTQIYTHV RL+++H Q+HPRA Sbjct: 240 RHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/291 (42%), Positives = 170/291 (58%), Gaps = 6/291 (2%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 F++ L E +LA+N++ AY+RD++ WL R + T + DL LA E Sbjct: 27 FIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIPKLTVR--DLTDYLAFMREENLDPK 84 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 S AR + ++ +YL E +D+P+ L + K +P LS RLL AP P Sbjct: 85 SIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLDAPQPYDP 144 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 L RD+A+LE+LYATG R SE+ + + D+ + GKG+KERLVPLG+ A+ +E Sbjct: 145 LFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLGDPALAAVE 204 Query: 191 TYLEHGRPWLLNGVSIDV---LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 YLEH RP L V L S R Q++TRQ W +K YA+ G + +SPH LR Sbjct: 205 AYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPAS-MSPHTLR 263 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL+ GADLR VQ LLGH+ + TTQIYTHV RL+++H Q HPRA Sbjct: 264 HSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 176/292 (60%), Gaps = 6/292 (2%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 Q++ L +E+ A NT+ +YRRDL+ ++++ R +L + + D++A L G Sbjct: 72 QWITYLTVERGKARNTIASYRRDLASYLDFVGER--SLDSIAATDIEAFLQSLGRHGLAV 129 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 TS R+LS +R + E DD + + P +PQ LP LS ++ L+++ D Sbjct: 130 TSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDS 189 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISL---RQGVVRVIGKGNKERLVPLGEEAV 186 + LR+KA+LE+LY TG R+SE++ L + DI+ G++ + GKG+K+R+VP+G A Sbjct: 190 AVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHAR 249 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL GRP L G S + + + M+RQ+ W +K A AGI ++ +SPH L Sbjct: 250 QAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGI-TKDISPHTL 308 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GAD+R VQ LLGH+ ++TTQIYTH+ + LR + + HPRA Sbjct: 309 RHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 212 bits (539), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/309 (39%), Positives = 187/309 (60%), Gaps = 20/309 (6%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL---HHRGLTLATAQSDDLQALLAER 62 A I QFL L +E+ AE T +YR DL+ + ++L + R + DL+ ++ Sbjct: 3 AAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSAL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E GY TS AR L+++R +++ RE + +P+ L +P+ ++LP L+ ++ +LL Sbjct: 63 HEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLL 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +AP D P LRD+AMLE LY+ GLRVSELVG+ D+ L +GVVR+ GKG+KERL PLG Sbjct: 123 EAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLG 182 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDV-------------LFPSQRAQQMTRQTFWHRIKH 229 A+ ++ +L H + L +S+ +F ++ +++T ++ ++ Sbjct: 183 SFALRAIKKWLAHRK---LASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEK 239 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 Y L G+D + +PH LRH FATHLL+ GAD+R VQ LLGH L TTQIYTHV+T L+ Sbjct: 240 YLKLTGLDL-RTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKA 298 Query: 290 LHQQHHPRA 298 ++++ HPRA Sbjct: 299 VYERAHPRA 307 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 212 bits (539), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/309 (41%), Positives = 179/309 (57%), Gaps = 23/309 (7%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQA--------LL 59 + +L + +E+ LA NTL AYRRDL+ +L G Q D+ L Sbjct: 57 VTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQ----QPGDITRHHVTGFVRAL 112 Query: 60 AERLEGGYK--ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 ++ +GG S+AR + AVR L ++ E DP++ + P +RLPK ++ + Sbjct: 113 SDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAITVDE 172 Query: 118 VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISL-----RQG--VVRVI 170 V R+L+A D LRD+A+LE LY+TG R+SE VGL + DISL QG +VR+ Sbjct: 173 VTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAIVRLF 232 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKH 229 GKG+KERLVPLG LE YL GRP L G LF + R +++RQ+ W +K Sbjct: 233 GKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKV 292 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 A A I + +SPH LRH+FATHLL GAD+RVVQ LLGH+ ++TTQ+YT V + LR+ Sbjct: 293 AAEKANI-TRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLRE 351 Query: 290 LHQQHHPRA 298 ++ HPRA Sbjct: 352 VYAAAHPRA 360 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/292 (41%), Positives = 177/292 (60%), Gaps = 3/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 IE FL + +EK ++ NT AY DL+ L G+ + + E + G Sbjct: 6 IESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQAG 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++S R +S++R +L DPS +L SPK ++LP S+ +VERLL + Sbjct: 66 RASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVP 125 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 PL LRD+AMLE+LY TG+RVSEL+GL + D+ G ++ GKG + R++P+ A Sbjct: 126 TSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSVAQ 185 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++E Y++ R L G + LF + R +++RQ FW IK A LAGI+ E ++PHVL Sbjct: 186 SFVERYIQQARNG-LGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKE-ITPHVL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR +Q +LGH+DL+TTQ+YTHV RL ++++HHPRA Sbjct: 244 RHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 211 bits (536), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/294 (42%), Positives = 182/294 (61%), Gaps = 9/294 (3%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD---LQALLAERLEGGY 67 F+D L E+ L+ NT AYR DL +WL RG +Q D L L AER + G Sbjct: 9 FIDYLVTERGLSSNTTAAYRSDLEEFRDWLTERGFK-EWSQVDREAILDYLDAER-DLGR 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA--P 125 + + AR L AV+ L ++L E + D +A + SPKL + LP LSEA+V+ L+A Sbjct: 67 ETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAFPA 126 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + +P E+R++A+LEVLY++GLRVSEL L ++ + ++RV+GKG+K R+VP+G+ A Sbjct: 127 SVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGKVA 186 Query: 186 VYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + L YL RP L +F S+ + + R+ W+ +K A AGI + + PH Sbjct: 187 LRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGI-HKNIHPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+HLL HGADLRV+Q +LGH+D+STT+IYTH+ + RL +H + HPR Sbjct: 246 TLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPRG 299 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 209 bits (532), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 121/294 (41%), Positives = 180/294 (61%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-HHRGLTLATAQS--DDLQALLAERLE 64 I+ FL L +E+N ++ TL +Y DL +VE+L + G L Q +L+ +A E Sbjct: 16 IDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYVAYLHE 75 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y+ T+ AR L+ +R F+Y RE + + +P+ L +P+ ++LP L+ Q+ LL+A Sbjct: 76 CQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGTLLEA 135 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P +Q + LRD+A+LE LY+ GLRVSELV L +SD ++RV+GKG KER+ P+G Sbjct: 136 PPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIAPIGSF 195 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A L +LE D LF ++ ++T ++ ++ Y + G+D +K SPH Sbjct: 196 AAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLD-KKTSPH 254 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLL+ GADLR VQ LLGH L+TTQIYTHV+T+RL + +++ HP A Sbjct: 255 TLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHA 308 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 209 bits (532), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 178/297 (59%), Gaps = 8/297 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEW-LHHRG--LTLATAQSDDLQALLAERLE 64 IEQF L LEKN + +T+ +YR D+ E+ L H G + A ++A LA Sbjct: 8 IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y T+ AR ++A+R +++L RE + +P + +PK+ ++LP L E +V LL+ Sbjct: 68 DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P D L RD A+LE+LYATG+RV+EL GL SD+ L V V GKG KER+VP+G Sbjct: 128 P-ADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRT 186 Query: 185 AVYWLETYLEHGRPWLLNGVSID---VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A LE YL RP L + + LF + + +T ++ I Y + ++K+ Sbjct: 187 AAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAV-AKKV 245 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH +RH FATH+LN+GADLR VQ +LGH +LSTTQ+YTHV ERL+ ++++ HPRA Sbjct: 246 SPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes RepID=A1ZPB9_9SPHI Length = 299 Score = 209 bits (532), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 190/294 (64%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL--ATAQSDDLQALLAERLEG 65 I++F L LE++L+EN+L AY D+ ++L GL++ A ++D ++ L+ + Sbjct: 7 IKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLAKL 66 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A+S AR+LS ++ ++YL E+ E DPS ++ +P++ +++P LS ++E LL Sbjct: 67 GIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVI 126 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + P R++AM+EVLY++GLRV+EL+ L +S++ L G +R+IGK NKER VP+G EA Sbjct: 127 DLSTPEGARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGREA 186 Query: 186 VYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 +L +Y+E+ R + + + D +F ++R +++R + IK A+LA I + +SPH Sbjct: 187 ARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADI-KKNISPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHL+ GA+++ VQ +LGH +++TT+IY + + LRQ + HPR+ Sbjct: 246 TFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPRS 299 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/297 (41%), Positives = 186/297 (62%), Gaps = 14/297 (4%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD-----LQALLAERLEG 65 FL+ L EKNL+ T++ Y +DL+ + + + Q D+ ++ LA + Sbjct: 8 FLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQ---FELYQWDEVTHKHIRHFLAYLKDK 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y+ +++AR LSA+R LF++L RE+ + SA LA+PK ++LP+ LS +VE L+ AP Sbjct: 65 NYEKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLINAP 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D P LRDKA+LEV Y +G+R+ EL GL + ++ L+ G ++V GKGN ERL PLG A Sbjct: 125 -GDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSFA 183 Query: 186 VYWLETYLEHGRPWLLNGV----SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 + +E YL + RP LL + D LF ++ ++++++ R+K Y V ++ Sbjct: 184 LAAIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKY-VQQTASEHRV 242 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH+FATHLL GADLR VQ LLGH ++STTQIYTHV R+ +++ ++HPRA Sbjct: 243 SPHSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 177/292 (60%), Gaps = 8/292 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+++L + ++N + TL AYR DL + +L G T LA L+ LA + Sbjct: 14 IDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFLKKKN 73 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 T+ AR L+++R L+++L + E +P + +PK ++LP +S E LL P Sbjct: 74 PSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILLNQPD 133 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRDKA++E LY+TG+RVSELVG+ ++DI G+V+V GKG+KER++P+G A+ Sbjct: 134 TCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVGNHAL 193 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YLE + + LF ++ ++T ++ I+ Y A + ++SPH Sbjct: 194 NAIQLYLEKRK------ADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHL-RVSPHTF 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL++GADLR VQ LGHS LSTTQIYTHV TERL+Q++ + HPRA Sbjct: 247 RHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 180/293 (61%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQALLAERLEG 65 I+ F L E L++NT++AY RDL +L +H+ + QS ++ L + Sbjct: 5 IKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKSIKKK 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A + +R L++++ ++L EK ++D + +A PK+ + LP LS +V +L+ Sbjct: 65 GLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVI 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L LR+ A+LE++Y +GLRVSEL+ + + DI ++Q V V GKG+KER+VP+ + A Sbjct: 125 DKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDMA 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + + YL R L+ + D LF + + + ++R F+ +K A A +D EK+SPH Sbjct: 185 IIAIRNYLVKARDDLIKEKT-DYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPHT 243 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +G DLR +Q LLGH D+STTQIYTH++ RL+Q++ + HPRA Sbjct: 244 LRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRA 296 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 133/302 (44%), Positives = 182/302 (60%), Gaps = 16/302 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLT-LATAQSDDLQALLAERLE 64 I+++L L E N A +T +AY DL+ ++E L G+ L +D L+ + Sbjct: 44 IDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLYA 103 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + +S AR L+A R F+YL RE P L SPKL + LPK LSE++V LL A Sbjct: 104 VGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLSA 163 Query: 125 P--LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 D+PL LR+ AM+E+ YA+GLRV+EL GL + + G VRV+GKG KER+VP+G Sbjct: 164 AERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPVG 223 Query: 183 EEAVYWLETYLEHGRPWLLN---GVSIDVLFPSQRAQQMT---RQTFWHRIKHYAVLAGI 236 E+A+ + YL+ GRP L VS LF + R ++++ Q RI A L Sbjct: 224 EQALEAISRYLKQGRPALARRQREVS-PALFLNHRGRRLSVRGAQDILSRIADGAAL--- 279 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 +SPH LRH FATHLL+ GADLR VQ +LGH+ LSTTQIYTHV+ ERL++++ + HP Sbjct: 280 -ERGISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHP 338 Query: 297 RA 298 RA Sbjct: 339 RA 340 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 208 bits (530), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/311 (39%), Positives = 177/311 (56%), Gaps = 21/311 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDL------------ 55 IE F+ L E+ L+EN + R L WL R D L Sbjct: 5 IEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVAP 64 Query: 56 --------QALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQ 107 LA + G A S ++ A++ F++L+ K E D + L P+ + Sbjct: 65 GEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTER 124 Query: 108 RLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 LP+ ++E QV+RLL+ ID P LRD+A+LE+LYA+GLRVSELV + ++ L ++ Sbjct: 125 YLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARII 184 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 RV GKGNK RLVP+G++A + YLE RP ++ + +F S R ++T W + Sbjct: 185 RVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQIV 244 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 K A AG+D + PH+LRH+FATHLL++GADLR++Q +LGH+D+STTQIYTHV +RL Sbjct: 245 KACAKNAGLDI-NVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQRL 303 Query: 288 RQLHQQHHPRA 298 + +H + HPRA Sbjct: 304 KAVHHRFHPRA 314 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 3/290 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++++L+ L +E+ LAENTL AY DL + +L RG LA L + + G Sbjct: 28 MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGM 87 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR L+ +R F + E E DP+ L +PKL + LP L+ ++ +L P + Sbjct: 88 AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDL 147 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+ MLE++YA GLRVSEL L D + GVVRV GKG KER+VP+ + Sbjct: 148 SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCA 207 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 + YL RP +F ++ + ++RQ W +K + AGI + +SPH R Sbjct: 208 LVTAYLRDWRPAF--SPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKD-ISPHTFR 264 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FATHLL GADLR VQ+LLGH+D+S T+IYTHV +RLR++H HHPR Sbjct: 265 HSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPR 314 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/301 (41%), Positives = 184/301 (61%), Gaps = 11/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR------GLTLATAQSDDLQALLAE 61 I+ FL L +EKN + T +Y++DL +++ R + + + LA Sbjct: 5 IDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAH 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G + AR L+A R ++YLYREK + +P +ASPKL +RLP+ L E + + L Sbjct: 65 MQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKEL 124 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 ++AP QPL +RD+A+LE LYA GLR+SELV L + D+ + G +RV GK +ERLVPL Sbjct: 125 VEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPL 184 Query: 182 GEEAVYWLETYLEHGRPWLL-NGVSIDV---LFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 G AV L+ YL RP L+ N V+ + LF + R ++++ + + Y ++ Sbjct: 185 GSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLE 244 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 K+SPH LRH+FATHLLN GADLR VQ L+GH LS+TQ+YTHV ERL++++++ HPR Sbjct: 245 -RKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHPR 303 Query: 298 A 298 A Sbjct: 304 A 304 >UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadaceae RepID=Q0C629_HYPNA Length = 309 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 129/308 (41%), Positives = 182/308 (59%), Gaps = 21/308 (6%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D +RI FL+ + E+ + NTL+AY RDL E+ H L L TA S DL A LA+ Sbjct: 3 DRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCH---LRLVTASSSDLSAWLADLA 59 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ++ AR LSAVRR F++L++E R+DDP+A L P + +P LS +V RL++ Sbjct: 60 ARGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIE 119 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV------VRVIGKGNKER 177 A D+ L K ++E+LY GLR +ELV L + ++ R+ + + GKG K+R Sbjct: 120 ACGNDKRL----KCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDR 175 Query: 178 LVPLGEEAVYWLETYLE------HGRPWLLNGVSIDVLFPSQ-RAQQMTRQTFWHRIKHY 230 L PLG A+ L +LE P L+ +FPS+ + +TR+ ++ Sbjct: 176 LCPLGRAALIALSEWLEVREASLPDNP-LMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDL 234 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 A AG+ SE++ PH LRHA+ATHLL GADLRVVQ LLGH+D++TTQIYTHV T+ L +L Sbjct: 235 AGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAEL 294 Query: 291 HQQHHPRA 298 + HP A Sbjct: 295 LETAHPMA 302 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 119/294 (40%), Positives = 184/294 (62%), Gaps = 9/294 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG-GY 67 E++L L LE+NL+ NTL++YRRD + WL R +T + D+++ +A +G G Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLGARSVT--ELNTGDIESFMASLAKGEGL 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 A++ AR+L+AVR ++L E E D + +A P +PK LS A+V +L++ Sbjct: 72 AASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPN 131 Query: 128 DQP---LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D +++RD+A+LE+LY+TG RVSEL+GL + D+ + ++ V GKG+KER+VP+G+ Sbjct: 132 DDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDP 191 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L+ YL RP N LF ++ +M RQ+ ++ + + AG+ +SPH Sbjct: 192 ALDALQHYLVRVRP-AFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGV--AGVSPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GAD+RVVQ LLGHS++ TTQIYT V+ + LR+ + HPR+ Sbjct: 249 SFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPRS 302 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 120/292 (41%), Positives = 177/292 (60%), Gaps = 4/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQS-DDLQALLAERLEGG 66 I FL L E+ L+ +TL AY+RDL+ W GL A S D++ A R G Sbjct: 8 IRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFAAARHRQG 67 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S R LS++R LF+YL RE +P+ +A+P+ P+RLP LS + RLL+ Sbjct: 68 LAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARLLEGSP 127 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL LRD+A+ E++Y++GLR++E VGL + + L +G+V V+GKG K R VP+G +A Sbjct: 128 EDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRVPVGGKAR 187 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ +L RP L G +F SQR +++ ++ R+ A L+G+ + PH+L Sbjct: 188 EALQAWLAV-RP-ALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGV-GRPVHPHML 244 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA+HLL DLR VQ LLGH+D++TTQ+YTH+ + L +++ Q HPRA Sbjct: 245 RHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRA 296 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 206 bits (525), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 191/327 (58%), Gaps = 36/327 (11%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-------RGLTLATAQSDDLQAL 58 +++ FL L E+N++ T+ AYR+DLS +E+L + ++LA ++ ++ Sbjct: 12 SQLTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLF 71 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E L+ GY++ S R L++V+ F++L P+A++ +PK + LP L+E Q Sbjct: 72 LGELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQT 131 Query: 119 ERLLQAPLIDQPLEL-----------------------RDKAMLEVLYATGLRVSELVGL 155 + L ++D E RD+A+LE+ Y+ GLR++EL+GL Sbjct: 132 QTLFDE-ILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGL 190 Query: 156 TMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL----LNGVSIDVLFP 211 + ++ + G V+V+GKG K+R++PLGE A L+ YLE + + N + + +F Sbjct: 191 NIMELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFV 250 Query: 212 SQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHS 271 +++ +++ +K Y + + +K SPHVLRH FATHLLN+GADLR V +LGHS Sbjct: 251 TEKGKRVYPVLVQRLVKKY-LSPVTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHS 309 Query: 272 DLSTTQIYTHVATERLRQLHQQHHPRA 298 +LSTT+IYTH++ ERL+Q++QQ HP+A Sbjct: 310 NLSTTEIYTHISFERLKQVYQQAHPKA 336 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 206 bits (525), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 117/294 (39%), Positives = 176/294 (59%), Gaps = 5/294 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERLEGGY 67 E+FL L +E+N + NT+ Y+ DL +L RG T D+++ LA+ Sbjct: 10 ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQLHREEK 69 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR +S++R ++YL RE + +P + +PKL ++LP L E ++ LL+ P + Sbjct: 70 ARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDL 129 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+A+LE LY+TG RVSELVGLT++ + L ++GKG+KER+VPLG + Sbjct: 130 STELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLGHPCIR 189 Query: 188 WLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + YL R L+ + D +F + R +T ++ + Y +A I + +SPH Sbjct: 190 AMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASI-QKHVSPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +RH FATHLL+HGADLR VQ LLGH+ LSTTQIYTHV +R+ ++++HHPRA Sbjct: 249 TIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 181/301 (60%), Gaps = 12/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG-- 65 + ++D L +EKN + NTL+ Y+RDL+ V WL L + + D++ +A+ G Sbjct: 28 VAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDLNIDSVDEPDIEQFIADLRRGDS 87 Query: 66 --GYK---ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G+ A+S+AR AVR L ++ + E D +A + + Q LP L+ QV R Sbjct: 88 TLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQVNR 147 Query: 121 LLQAPLIDQ---PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 L++A +++ P+ LRD+A++E+LY TG+R+SE + L + I VRV+GKG KER Sbjct: 148 LIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGKGRKER 207 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 LVP+G A++ ++ +L GRP ++ S LF + R ++ RQ+ W + A G+ Sbjct: 208 LVPIGAPALHAIDAWLVRGRPSMVK-RSDKALFLNARGNRLGRQSVWKFLHAAAERCGL- 265 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + + PH LRH++ATHLL GAD+R VQ LLGH+ ++TTQIYT V+ + LR+++ HPR Sbjct: 266 GDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPR 325 Query: 298 A 298 A Sbjct: 326 A 326 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/292 (40%), Positives = 173/292 (59%), Gaps = 4/292 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQS-DDLQALLAERLEGGY 67 +L L +E+ + T+ +Y DL+ + +L RG+ + A + DD+ A + GY Sbjct: 16 NDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGY 75 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S R LSA++ ++L E + +P+ ++ PK+P RLP LS ++V LL P Sbjct: 76 ADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFK 135 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D PL LRD+A LE+LY GLR SEL+ L + D+ +G++RV+GKG++ER+VP+G A Sbjct: 136 DGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQR 195 Query: 188 WLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L YLE+GRP L D + + R +++RQ H I A A I L PH L Sbjct: 196 VLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQAL-HTIVRTAG-ATIGRPDLHPHTL 253 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L GADLR +Q +LGHSD+STTQIY HV +R+ + HPRA Sbjct: 254 RHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRA 305 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/310 (39%), Positives = 173/310 (55%), Gaps = 26/310 (8%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-----------GLTLAT 49 M++D A F+ L ++ L+E T +Y RDL + +L + G+ L Sbjct: 1 MERDAA---SFISFLAGQRGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYF 57 Query: 50 AQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRL 109 A DL G + R+ +R F+YL +E+ E DP L PK+ ++ Sbjct: 58 AYLKDL----------GKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKP 107 Query: 110 PKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRV 169 P+ L+ + ERLL+AP D PL LRDKAMLE+LYATG+RVSEL+ L D++L +R Sbjct: 108 PQTLTVEETERLLEAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRC 167 Query: 170 IGKGNKERLVPLGEEAVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIK 228 G+ KER++P G WL+ YL GR L L+ LFP++R +++RQ FW +K Sbjct: 168 TGERGKERILPFGGVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMK 227 Query: 229 HYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 Y AGI S+ ++PH LRH+FA HLL GAD+R VQ LLGHSD ST Q+Y + L+ Sbjct: 228 KYGQEAGITSD-ITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLK 286 Query: 289 QLHQQHHPRA 298 ++ HPR Sbjct: 287 TVYDAFHPRT 296 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/296 (38%), Positives = 178/296 (60%), Gaps = 7/296 (2%) Query: 4 DLAR-IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 DL R IE +++ L E+N + NTL +Y RDL ++ + L + ++++ + Sbjct: 4 DLKREIENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTNKR--NVRSYIQFI 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + YK ++ R + ++R F+YL + +D + + +PK ++LP+ LS +V +LL Sbjct: 62 AQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +P +D + +RD+A++E LYATG+RVSELVG+ DI+ G +RV GK KER+V +G Sbjct: 122 NSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIVG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 EE + L+ Y +H RP LL F + + +++ + IK Y ++K+S Sbjct: 182 EETLKILQLYKDHVRPKLLKKPE-KAFFLNAKGGRISDRAIRMIIKKYTKDF---NKKVS 237 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH FATHLL GADLR VQ LLGH +STTQIYTH+ +E++R+ + HPRA Sbjct: 238 PHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRA 293 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 168/296 (56%), Gaps = 4/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 L+ + FL L +EK ++ T+ +Y DL V +L G+ A + D A L Sbjct: 18 LSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLS 77 Query: 65 G-GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G GY A S R +SA++ +L R+ DP+ L P +P RLP LS QV LL Sbjct: 78 GRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLD 137 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + PL +R+ LE+LY GLR SEL GL D L +G++R++GKG++ER+VP+G Sbjct: 138 QEFREGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGG 197 Query: 184 EAVYWLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 A L +YLE RP L + + + + R +++RQ+ ++ + GI + L Sbjct: 198 SAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGI--KDLH 255 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLL GADLR +Q +LGHSD+STTQIYTHV +R+ + HPRA Sbjct: 256 PHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRA 311 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 182/292 (62%), Gaps = 7/292 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I FL+ + L+K + +TL AY+ DL E+ + + + ++ ++E++ G Sbjct: 8 ITNFLNHIKLQKGDSSHTLRAYKNDLE---EFFNFAKVEPEKVEPIVIRGFISEQILKGK 64 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 T+ AR LS +R F YLY E F + +P+ ++S K+ + LPK L+ +L++AP Sbjct: 65 SKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVEAPSE 124 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D+ RDKA+LE+ Y++G+RVSEL GL + D+ L++G+++V GKG KER+VP+G++A Sbjct: 125 DKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVPVGQKAKE 184 Query: 188 WLETYLEHGRPW-LLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 L+ YL + + +S+D LF + R Q+++ + ++ YA G+ EK+ PH Sbjct: 185 ALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGV-LEKIGPH 243 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 LRH FA+HLL GADLRV+Q LLGH+ LSTTQIYTHV + L +++ + HP Sbjct: 244 TLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHP 295 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 176/295 (59%), Gaps = 4/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD--DLQALLAERL 63 A ++ F L LE++L+ N++ AY RD+ +V++L + Q DLQ+ + Sbjct: 22 AYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWIA 81 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ATS AR++S ++ ++YL E DP+ L +PK ++LP LS ++E+++ Sbjct: 82 TLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIG 141 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P R++A+LE +Y+ GLRVSE+ L +S + G +RV+GKG+KERLVP+G Sbjct: 142 QIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIGS 201 Query: 184 EAVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 +AV ++ Y + R + + D+LF ++R +TR + IK AGID +++S Sbjct: 202 DAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGID-KQVS 260 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH RH+FATHL+ GADLR VQ +LGH ++TT+IYTH+ E LR Q+ HPR Sbjct: 261 PHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 172/293 (58%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERLEGG 66 +E FL L E +A NT++AYR D+ ++W + + L+ L L Sbjct: 25 LEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRK 84 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 AT+ +R L ++ F+YL E + + L SPKL + LPK LS +V +LL AP Sbjct: 85 LAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPC 144 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRD+A+L ++YATG RV+E+V L ++ + L +G R +GKGNKER+V L AV Sbjct: 145 RQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAV 204 Query: 187 YWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +E YL H RP L + LF ++ +Q++R W+ +K A G S+++SPH Sbjct: 205 AAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGC-SKEVSPHT 263 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATH++ GA++R +Q LLGH+++ TTQIYTHV RL+ +HQ +HPR Sbjct: 264 LRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPRG 316 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 168/275 (61%), Gaps = 7/275 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLE 64 +E+F+ L K +++NT+ +YRRDL ++ RG+ A T S D L ER E Sbjct: 5 VEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLER-E 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G AT S R+L++++ F Y E + + +P+ + +PK+ ++ P LS +V RLL Sbjct: 64 GKAAATIS-RMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQ 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P P E+RDKAMLE+LYATG+RVSEL+ L + I++ G + G +ER +P G Sbjct: 123 PGGRTPKEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSG-RERTIPFGRV 181 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A L+ YL++ RP L D LF + QM+RQ FW IK+Y AGI ++ ++PH Sbjct: 182 AKKALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTD-ITPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 LRH+FA HL++ GAD++ VQ +LGHSD++TTQ+Y Sbjct: 241 TLRHSFAAHLISSGADMKAVQQILGHSDMATTQMY 275 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 202 bits (513), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/300 (42%), Positives = 179/300 (59%), Gaps = 5/300 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M Q A + FL+ + +E+ A NTL AY +DL +L G L A ++ ++A Sbjct: 1 MSQGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQ 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G ++AR SAVR+ ++++ E +R DDPS +A+PK + LPK L ++ER Sbjct: 61 DLGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIER 120 Query: 121 LLQAPLI-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL A D LR M+E++YA+GLR+SEL+ L + ++ + V GKG KERL Sbjct: 121 LLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLA 180 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDV--LFPSQRAQ-QMTRQTFWHRIKHYAVLAGI 236 PL + A ++ YL RP L D LFPS+ A ++T + ++ A+ AGI Sbjct: 181 PLNDAARAAVKAYLVE-RPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGI 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 D +K+SPHVLRHAFATHLL GADLRV+Q LLGH+D++TTQIYTHVA E L + Q HP Sbjct: 240 DRQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHP 299 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/306 (41%), Positives = 183/306 (59%), Gaps = 20/306 (6%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSD---------DLQ 56 ++ +FL+ L +++ + +T+ AYR DL+ ++ RG T++T D L Sbjct: 7 QVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRLYLASLN 66 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 L ++ GY +S R L+AVR F +L R + E +P+ +A+PK QRLP L+ Sbjct: 67 GGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLPFHLNID 126 Query: 117 QVERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 Q L++AP +QP RD A+LE+LY++GLRVSEL GL ++D+ G+VRV GKG Sbjct: 127 QTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKG 186 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KER+VP+G A+ LE YL GR L + LF R ++ R+T +K +A Sbjct: 187 GKERIVPVGSAALEALEQYLA-GRGQLADDAP---LFLGCRGARINRRTVAQLVKRWA-- 240 Query: 234 AGIDS-EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 +GI + +SPH LRH FATH+L GADLR +Q LLGHS LSTTQ YTHV +RL +++ Sbjct: 241 SGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDRLLEVYD 300 Query: 293 QHHPRA 298 + HPRA Sbjct: 301 KAHPRA 306 >UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178962A Length = 294 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 173/292 (59%), Gaps = 3/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL-EGG 66 +++++ L EK L+ +T+ +YR DL + + R +T + L L RL + G Sbjct: 5 LDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A+S R +++R FQYL R+ DP+ L +PK ++ PK L+ QV++LL AP Sbjct: 65 KAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPD 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 P RDKAMLE+LYA+G++VSELV L++ DI L +R G KER++P+ A Sbjct: 125 SGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIAA 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + Y+ R L+ D LF + ++TRQ FW IK Y LAGID E ++PH L Sbjct: 185 ESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGID-EDITPHTL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA HLL +GADLR VQ +LGHS LSTT +Y A + +++++ +HPR+ Sbjct: 244 RHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPRS 294 >UniRef50_Q5UF10 Predicted site-specific recombinase n=1 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UF10_9PROT Length = 315 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 166/297 (55%), Gaps = 11/297 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I+ FL A+ K + NTL+AYRRDL L R TL DDL+ ++ + Sbjct: 18 IDGFLQAISAMKAASVNTLSAYRRDLLDCQIGLETRAKTLTNCDMDDLRGVIFWWHQRDL 77 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K S AR LSA+R+ + + R+D+P+ L +P LP PK LSE ++ +LL+ Sbjct: 78 KPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLKMAKT 137 Query: 128 DQP--LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 +P LR AMLE+LYATGLRVSELV L + + V GKG +ERLVPLGE A Sbjct: 138 LEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERLVPLGETA 197 Query: 186 ----VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 V W+E P V D +FP + M+R +K AV A I+ ++ Sbjct: 198 RLAAVRWIEC--RDSNPAF---VQSDYMFPVRGGGPMSRHQLARLLKKLAVAADIEVGRV 252 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH+FATH+LN GADLR +Q LLGH+D+STTQIYT ERL L HP A Sbjct: 253 SPHKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSRPERLAGLVTSAHPLA 309 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 112/290 (38%), Positives = 173/290 (59%), Gaps = 1/290 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ + L LE+N + NTL AY+ DL ++ + + ++ + +DLQ + E Sbjct: 12 VKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQHFAGQLHEHDI 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS AR+LS VR +++L + + E DP+ L SP+L + LP+ LS +V+ + + + Sbjct: 72 GPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSIDL 131 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 +P R+KA++EVL++ GLRVSELV L +S++ L +G +RV GKGNKERLVP+ +A+ Sbjct: 132 SKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPISPKAIK 191 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L + + D +F ++R +TR +K A AGI + +SPH LR Sbjct: 192 ELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGI-QKTISPHTLR 250 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FAT LL GADLR +Q++LGH + TT+IYTH+ T LR+ HHPR Sbjct: 251 HSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPR 300 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 174/293 (59%), Gaps = 10/293 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQAL---LAERLE 64 +E F L EK LA+NTL AYRRDL +L R + LQA+ LA + + Sbjct: 5 LEDFFIYLASEKGLAQNTLEAYRRDLFSFATFLKQRSVN--NWSQIHLQAIIDYLALKQQ 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y + S R L A++ LF++L RE + + +PKL Q +P LS +++R+L Sbjct: 63 QHYASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAI 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P I RDKA+LE LYA GLRVSEL L + D+ VRV+GKG KER+VP+G++ Sbjct: 123 PNIQTWRGARDKAILETLYACGLRVSELCQLKIYDVD--DTFVRVLGKGGKERIVPIGQQ 180 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ ++ YL R N + + LF +++++ +TR W +K YA A I + +SPH Sbjct: 181 AIAAIDGYLSF-REGGENSRN-EFLFITKKSKPLTRALVWKLVKFYARQASI-FKSISPH 237 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH FATHLL+HGADLRV+Q +LGH+ +++T YTHV+ RL+Q Q HPR Sbjct: 238 TFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 116/292 (39%), Positives = 158/292 (54%), Gaps = 10/292 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 R+E FL+ L LE+ + NT AYRRDLS V + RG + D + LA G Sbjct: 13 RMESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEVDTVSLFLASLRSQG 72 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R + ++ ++L +DP P P +P L+E +V RLL+A Sbjct: 73 AAKSSVQRAAACIKSFSRFLGEVG---EDPGKVPMLPDKPSPMPAILTEGEVLRLLEATA 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D P +LRD+AM+E+LY GLR SEL LTM D+ L G VRV GKG+K R++PL E Sbjct: 130 GDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETR 189 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 LE YL+ + G +F R R+ W I+ A I + +L PH+L Sbjct: 190 SALERYLK------VRGTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHIL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+ ATHLL G DLR +Q LLGHS + TT++YTH E LR ++ + HPRA Sbjct: 244 RHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRA 294 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 173/284 (60%), Gaps = 1/284 (0%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 +L+ +EK L+ NTL +Y+RD+ + +++L ++ A D++ L+ER E G K+ Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNKKSILKATRKDIEKFLSERKEQGSKSR 61 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 + AR ++ L+++L E + +P+ +L +L + LP+ L++ +V+ LL Sbjct: 62 TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTD 121 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 LRDKA+ E++Y++GLRVSE+ L + DI +++ GKG +ER+VP+ + A+ L+ Sbjct: 122 KGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDILQ 181 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 Y++ R ++ G LF + R +++R W +K + I+ + + PH LRH+F Sbjct: 182 RYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIE-KNIYPHTLRHSF 240 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 ATHL+ HGADLR VQ +LGHSD++TT+IYTHV + L++ +H Sbjct: 241 ATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAKH 284 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 200 bits (508), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 123/299 (41%), Positives = 174/299 (58%), Gaps = 12/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG-- 65 +E FL L E+ + T++AYR D+ ++ R A + D+ + R G Sbjct: 10 LEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDI--WMVRRYLGWL 67 Query: 66 ---GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G + +S R L+A+R +++L R + P A L+ P+ +RLP LS A++E+LL Sbjct: 68 NQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLL 127 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P PL LRD+A+LE LYA+G+RV+ELVG+ D+ L G RV+GKG +ER+VPLG Sbjct: 128 SIP-ATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLG 186 Query: 183 EEAVYWLETYLEHGRPWLLN---GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 AV LE YL RP L LF + ++T + R+ HY A + Sbjct: 187 RYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAAL-RR 245 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH +RH FATHLL GADLRVVQ LLGH L+TTQIYTH++ +LR++++Q HPRA Sbjct: 246 GVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRA 304 >UniRef50_A1B1J0 Phage integrase family protein n=37 Tax=Alphaproteobacteria RepID=A1B1J0_PARDP Length = 323 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 133/310 (42%), Positives = 177/310 (57%), Gaps = 16/310 (5%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 D RI FLDA E A NTL AY RDL V+WL R TL T + ++ L+ Sbjct: 7 DDRGRISAFLDAQAAEAGAARNTLLAYGRDLRDFVDWLAARDETLLTVPREGVEDYLSHC 66 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G + AR LSA+R+L ++ E +REDDP+ ++ P QRLPK L A+V+ +L Sbjct: 67 DAQGLSRATRARRLSAIRQLTRFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAML 126 Query: 123 QA-PLI--DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 A P I ++ R+ ++E++YATG+RVSELV L + ++ + GKG KER+V Sbjct: 127 DALPRIGRNETERARNLVLVELVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMV 186 Query: 180 PLGEEAVYWLETYLEH----------GRPWLLNGVSIDVLFPS-QRAQQMTRQTFWHRIK 228 PL + A L +L+ GR L+ G LFP+ R MTRQ + Sbjct: 187 PLSDPARRALAAWLKRRDDAPAESPLGR--LVAGKGARWLFPAPSREGHMTRQAMNALLG 244 Query: 229 HYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 A+ AGID ++SPHV+RHAFATHLL GADLR +Q LLGH+DL TT+IYTHV R+R Sbjct: 245 QLALAAGIDPARVSPHVIRHAFATHLLEGGADLRAIQTLLGHADLGTTEIYTHVMDTRMR 304 Query: 289 QLHQQHHPRA 298 L HHP A Sbjct: 305 DLVLNHHPLA 314 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 199 bits (507), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 182/294 (61%), Gaps = 10/294 (3%) Query: 14 ALWLE----KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 ++WL+ +N +E+T+ AY RD+ +E+ + + L ++ DL+ LA+R+E + Sbjct: 13 SMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLS 72 Query: 70 TSS-ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL-- 126 +SS R L+++R+ ++ + K+ E +P+ + P+ LP + V ++L P+ Sbjct: 73 SSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPE 132 Query: 127 --IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 +DQ L LRDKAMLE+LY++GLR++EL GLT+ DI + +VR+ GKGNK R+VP G++ Sbjct: 133 KPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKK 192 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A L +L+ W + +F SQR +T + R+K A AG++ + L PH Sbjct: 193 AKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVD-LHPH 251 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH FA+H+L+ DLR VQ +LGHS+LSTTQIYTH+ + L Q++ Q HPRA Sbjct: 252 LLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRA 305 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 199 bits (507), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 111/290 (38%), Positives = 167/290 (57%), Gaps = 2/290 (0%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALLAERLEGGYK 68 QF L LE+ L++NT++AY DL+ + + + DDL + Sbjct: 4 QFKLYLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRELN 63 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 ++ +R L ++ F++LY+EK D HL S +L + LP LS ++ERLL Sbjct: 64 DSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYDEA 123 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 PL+ R+K ++E+LY+ GLR+SEL GL + G +RV GKG+KER VP G + Sbjct: 124 IPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVASM 183 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRH 248 Y+++ RP L + L S + +TR W +K A+ A I+ + L PHVLRH Sbjct: 184 SRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEIN-KNLHPHVLRH 242 Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +FA+HLL++ ADLR++Q LLGH+D++TT+IYTHV RL+ +HQ+ PRA Sbjct: 243 SFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 181/301 (60%), Gaps = 12/301 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQA--- 57 +K L+ +Q+L +EK L++NT+ +Y RDL ++ G Q +++ Sbjct: 3 IKDALSEYKQYL---IVEKGLSKNTIYSYLRDLIAFSNFI---GEEYEINQIENINKEHI 56 Query: 58 -LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 L + L S +R L ++R L+ +L +E +++ + PK ++LP LS+ Sbjct: 57 HLYLKELSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQE 116 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 ++ +L ++ + R++ M+E+LYATG+R+SEL+ LT+ D++++ G ++VIGKGNKE Sbjct: 117 EMIEILDGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKE 176 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R++P+G LE Y+ R N + +LF ++ Q+++R+ F+ ++ I Sbjct: 177 RMIPIGSYVGEILEQYINDYRAE-FNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSI 235 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 ++K+SPH RH FATHLL +GADLR +Q LLGHSD+STT IYTH++ +++R +QQ HP Sbjct: 236 -TKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHP 294 Query: 297 R 297 R Sbjct: 295 R 295 >UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0Y3M6_9CAUL Length = 313 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 8/297 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL+ + +E+ A NTL AY +DL +L L A ++ ++A + G Sbjct: 9 VDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARGL 68 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP-- 125 ++AR SAVR+ ++++ E +R DDPS +A+PK + LPK L A++ERLL A Sbjct: 69 SPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAATA 128 Query: 126 ----LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + D LR ++E++YA+GLR+SEL+ L ++ ++ + V GKG KERL PL Sbjct: 129 PNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAPL 188 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQ-QMTRQTFWHRIKHYAVLAGIDSE 239 + A + YL R +L G LFPS+ ++T + + A+ AGID + Sbjct: 189 NDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDRD 248 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 K+SPHVLRHAFATHLL GADLRV+Q LLGH+D++TTQIYTHVA E L + Q HP Sbjct: 249 KVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHP 305 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 178/303 (58%), Gaps = 13/303 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA---ERL 63 +E FL L E+ +E+T Y L + W + LT + L A L ERL Sbjct: 5 VEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFERERL 64 Query: 64 EGGYKATSSARL--------LSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 + S +L ++A+R +++ EK + + L+ P+ +RLPK LS+ Sbjct: 65 VEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKALSD 124 Query: 116 AQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 ++ +LL + + P L D+A+LE+ YA+GLR++EL + M + L G + VIGKGNK Sbjct: 125 LEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGKGNK 184 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 ER+VP+G +AV L+ YLE GRP L+ S +F + R T W RIK +G Sbjct: 185 ERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKRSG 244 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + + ++PH+LRH+FATHLL HGADLRV+Q LLGH+++STT+IYTHV+ RLR++H++ H Sbjct: 245 V-ARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRKFH 303 Query: 296 PRA 298 PR Sbjct: 304 PRG 306 >UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698363 Length = 227 Score = 198 bits (504), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/217 (44%), Positives = 141/217 (64%), Gaps = 1/217 (0%) Query: 74 RLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLEL 133 R + +R +++L +EK DP ++ PK LP+ +S ++E L+ + P L Sbjct: 5 RHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGL 64 Query: 134 RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 193 R+ AMLE LY GLRVSELV + M +I+L +R+ GKG+KER+VP+G A+ + ++ Sbjct: 65 RNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEKVRNWI 124 Query: 194 EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 253 HGRP +L + LF ++ + MTRQ FW +K Y+ +GI S+K++PH RH+FATH Sbjct: 125 MHGRPIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGI-SKKITPHTFRHSFATH 183 Query: 254 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 LL GADLR VQ +LGHSD+STTQIYTHV+ + LR+ Sbjct: 184 LLEGGADLRSVQTMLGHSDISTTQIYTHVSRDYLRKC 220 >UniRef50_C6I0L0 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I0L0_9BACT Length = 324 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 164/291 (56%), Gaps = 6/291 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +++F + L L K A NT+ AY DL L G++L + L L R G Sbjct: 13 LDRFEEELLLAKKRAPNTVTAYLTDLRTFSRHLTREGVSLLDFDGEALTPYLERR--GDL 70 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 S AR LS+VR ++L R+D P +P+LP+ LPK LS+ +VERL++AP Sbjct: 71 SVRSRARFLSSVRAWTRFLELSGVRKD-PRETPPAPRLPRSLPKILSQDEVERLIEAPDP 129 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 +P +RD+A+L YA+GLRVSEL +T + L G +RV+GKG KER+ L E + Sbjct: 130 HRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKERIAFLDERTRH 189 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L YL RP LF ++ +TRQ W IK + AGI S LSPHVLR Sbjct: 190 LLSDYLTTVRPAFAR--EHPELFLARDGAPLTRQALWTLIKKHGRAAGITS-PLSPHVLR 246 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL G D+R +Q+LLGH D+ TT+IYTHV+ L + HHPR Sbjct: 247 HSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLKLHHPRG 297 >UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia RepID=Q2GEQ3_NEOSM Length = 305 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 183/302 (60%), Gaps = 21/302 (6%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQS--DDLQALLAE 61 D +EQFL+ + +E+N NT+++YR DL ++ +L RGL A+ ++ + + L A+ Sbjct: 5 DCKYVEQFLEKILVERNATLNTISSYRTDLRLLSTFLKKRGLKDASKENLYEYIANLRAQ 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 +L + R ++ R+ F +LY EK +P+ L PK LP+ L++ +V L Sbjct: 65 QLSNA----TIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSL 120 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI----SLRQGVVRVIGKGNKER 177 L QP LR A+LE+LY++G+RVSEL+ + +SDI + +Q ++ ++GKG KER Sbjct: 121 LTFLEAGQPATLRLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHII-IVGKGRKER 179 Query: 178 LVPLGEEAVYWLETYL---EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 ++P ++A+ L+ YL + PWL G ++ + M+RQ +K A+ Sbjct: 180 ILPFSKKAIQVLKLYLTSYQSNSPWLFPGAG-------RKDRPMSRQRLGQLLKELALKC 232 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 ID +++SPHV+RH+FATHLL++G D++VVQ LLGH+ ++TTQIYTH++ +L + + Sbjct: 233 KIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAK 292 Query: 295 HP 296 HP Sbjct: 293 HP 294 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 118/299 (39%), Positives = 178/299 (59%), Gaps = 13/299 (4%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 FL+ L +E+ LA N++ AYRRDL +L + +L+ S+ + E Sbjct: 13 SSFLNHLQIERGLAANSIAAYRRDLVKFSIFLGSK--SLSEVDSNAINDFEISLREAKLS 70 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 S R+ S +R F++L +E + DP+ +A K +RLPK L+ +Q+ ++ + Sbjct: 71 VASINRVDSTLRSFFKHLQQE-YGYADPTLEIAPQKSARRLPKALTISQIVSMIDVAYRE 129 Query: 129 -QPLELRDKAMLEVLYATGLRVSELVGLTMSDIS---LRQGVVRVI---GKGNKERLVPL 181 QP+ RD+AMLE+LY++G RVSEL+G+ ++D+S G V + GKG KER+VPL Sbjct: 130 GQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPL 189 Query: 182 GEEAVYWLETYLEHGRPWLLNGVS--IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 G A +E YL RP L + S LF + R +++RQ+ W + A AGI +E Sbjct: 190 GSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGI-TE 248 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPHV RH++ATHLLN GAD+RVVQ LLGH+ ++TTQIYT + +++R+ + HPRA Sbjct: 249 HVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRA 307 >UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD80_THET1 Length = 310 Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 175/291 (60%), Gaps = 11/291 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQAL 58 M L+ +E+F+ L E++ + NT AY+ D+ +WL + + A S D+Q Sbjct: 1 MFDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDY 60 Query: 59 LAERLEG----GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 L L+G Y ++ AR ++A++ FQ+L + + +P++ L SP++ + PK +S Sbjct: 61 LL-YLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAIS 119 Query: 115 EAQVERLLQAPLIDQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 +V LL A + P +RD+AMLEVLY TGLRVSELV L + DI+L + ++ IG+G Sbjct: 120 VQEVNMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRG 179 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 K R VPL + AV L+ YLE RP L+ G LF + R Q++TRQ FW +K YA Sbjct: 180 -KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASE 238 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284 AGI + ++PH LRH+FA H+++ G DLR VQ LGH+ ++TTQ+Y + + Sbjct: 239 AGI--KGITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVYRQIKS 287 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 173/293 (59%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+QF+ + +EKN ++ T++ YR+D+ ++ G+ + + D++ ++E ++ Sbjct: 9 IDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDKK 68 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y S AR LSA+R ++L E ++P H PK RLP L E ++E L A Sbjct: 69 YARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLALP 128 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 ++PLE RDKA++E+LYATG+RVSE L + VRV GKG KER VP+G+ AV Sbjct: 129 ANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMAV 188 Query: 187 YWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +E+Y+ RP LL LF + R ++ ++ ++ A + +K+SPH Sbjct: 189 SAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAM-QKKISPHA 247 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +RH+FATHLLN GADLR VQ LLGH L TTQ+YTHV+ ERL +++ HPRA Sbjct: 248 IRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 172/300 (57%), Gaps = 17/300 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH---------RGLTLATAQSDDLQAL 58 I F + L LE + T+ AY+ DL ++ +G+T+ + D Sbjct: 5 IADFCNYLALEGK-SPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIR--DFFRF 61 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E+ + S AR +A+ F+Y R F +++P + PK LPK +E +V Sbjct: 62 LNEKPDCN---RSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEV 118 Query: 119 ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 LL P D P +R+KA+LE LY++GLR+SEL G+ + DI L++G+VRV GKGNK+R+ Sbjct: 119 RTLLSIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRI 178 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VPLG A+ + YL+ RP + S D+LF ++ + + +K Y L + Sbjct: 179 VPLGSYAIEAINNYLKV-RPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVA-KA 236 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + SPH LRH+FATHLL+ GADLR +Q LLGHS LSTT+ YTH++ E +++ +++ HPR+ Sbjct: 237 KGYSPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRS 296 >UniRef50_Q2NB52 Tyrosine recombinase xerC n=5 Tax=Sphingomonadales RepID=XERC_ERYLH Length = 306 Score = 196 bits (499), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/303 (41%), Positives = 172/303 (56%), Gaps = 23/303 (7%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M + A IE+FL L E+ A NTL AYRRDL E LATA+ L Sbjct: 1 MAKASAAIEEFLAMLAAERGAAANTLAAYRRDL----EGAEALAGDLATARRPALS---- 52 Query: 61 ERLEGGYK---ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 RL + + AR SA+R+ + +L E REDDPS+ L P + + LPK LS + Sbjct: 53 -RLGSAWSDLAPATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKE 111 Query: 118 VERLLQ----APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 VERL + +PL +R A++E+LY +GLR +ELV L ++ + + V GKG Sbjct: 112 VERLFEQAEREAETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKG 171 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 R+VP+ A L++++ L G LFPS++A +TR + +K AV Sbjct: 172 GVARMVPVSGRAREALQSWMG------LRGSDSPYLFPSRKAH-ITRVRLFQMLKELAVR 224 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 A ++ +K+SPHVLRHAFATHLL GADLRV+Q LLGH+D+STTQIYTHV RL L + Sbjct: 225 ADLNPDKVSPHVLRHAFATHLLEGGADLRVLQTLLGHADISTTQIYTHVDAARLVALVNE 284 Query: 294 HHP 296 HP Sbjct: 285 RHP 287 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 179/294 (60%), Gaps = 6/294 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDL---QALLAERLE 64 ++ ++ L +E+NLA N+L +Y RDL ++L L L T ++ L ++ + + Sbjct: 5 LQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTE-LKLKTIRNVTLGHIRSFVRKLSN 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G A S R +S++R +L E +D+P+ L +PK+P++LP L+ +++++L Sbjct: 64 RGLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGI 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + P+ RD A+ E++Y+ GLRV+EL SDI ++RV GKG+K+R VP+G Sbjct: 124 IPENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPI 183 Query: 185 AVYWLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A L+ YL H R L + ++ +F S+ +++TR W +K + A + E +SP Sbjct: 184 ARENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKE-VSP 242 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H LRH+FATHLL GADLR VQ +LGH+D++TTQ+YTH+ E L+++H+ +HPR Sbjct: 243 HTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/331 (40%), Positives = 180/331 (54%), Gaps = 42/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD-------------- 53 I+ FL L +EK + +T+ +Y+RDL V R TA Sbjct: 9 IDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPLP 68 Query: 54 --------DLQALLAER-------LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSA 98 D+ L A R L G K++S AR LSA+R F++L + DDP+A Sbjct: 69 AEDPAAELDVAQLDATRVRAFVYSLHGRNKSSSVARKLSALRSFFRFLRKNGIINDDPAA 128 Query: 99 HLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMS 158 +A+PK LP LS +V LL+ P RD+A+LE+LYATGLRVSEL GL ++ Sbjct: 129 AIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLDLA 188 Query: 159 DISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVS-----------ID 207 + L G+VRV+GKGNKERLVP+G AV +E YL R LL + D Sbjct: 189 QLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQ-RQVLLRQTAGQQKEGKKARGAD 247 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 L + R ++T ++ +K YA AGI + ++SPH LRH+FATHLL GADLRVVQ L Sbjct: 248 PLLVNSRGGRLTSRSIERLVKMYAERAGI-AARVSPHALRHSFATHLLEMGADLRVVQEL 306 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGH+ LSTTQ YTH+ + L ++ Q HP A Sbjct: 307 LGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 109/292 (37%), Positives = 174/292 (59%), Gaps = 3/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+++L+ L EK +E+T+N YRR L ++ + H G + + D++ L+A+R G Sbjct: 5 IQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +SSA LSA+RR ++L EK +P+ + PK +RLPK++ + L Sbjct: 65 ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D+P+E+RDKAM+E+LY++G+R++EL + + D+S +RV+GKGNK R VP G + Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFGNSSK 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L +L+ + N LF SQ+ ++T + R+ H+ G++ ++L PH L Sbjct: 185 KVLSLWLKERNNFAKNSDE-KALFLSQQGNRLTNRAIQQRLAHWGKKLGLN-DRLHPHKL 242 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+ ATH+L +DLR VQ LLGH+ +STTQIYTH+ + L + + HPRA Sbjct: 243 RHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRA 294 >UniRef50_Q5PBX3 Integrase/recombinase n=6 Tax=Anaplasmataceae RepID=Q5PBX3_ANAMM Length = 312 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 114/301 (37%), Positives = 186/301 (61%), Gaps = 10/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL++L + ++ NT ++YR DL + E+L R L + A + DL+A + GY Sbjct: 7 LDAFLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRGY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR +SA+R L+ +LY ++ + DP+A+L S KL + LPK L+ +V++LL A Sbjct: 67 SPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGS 126 Query: 128 DQPLE-LRDKAMLEVLYATGLRVSELVGLTMSDIS--LRQ-----GVVRVIGKGNKERLV 179 D +E R A++ +LY++G+R+SEL+ L DI L++ G + + GK +ERL+ Sbjct: 127 DLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLI 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQ-MTRQTFWHRIKHYAVLAGID 237 L E A+ + YL +++ S LFP + Q ++RQ +K A++AG+D Sbjct: 187 LLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVD 246 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +++SPH LRH+FATHLLN+G+++ +Q +LGH+ LSTTQIYT+VA +RL++ Q HP Sbjct: 247 PKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQTFHPF 306 Query: 298 A 298 A Sbjct: 307 A 307 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 116/295 (39%), Positives = 175/295 (59%), Gaps = 5/295 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 L + FL L E+ L+ +T+N Y+RDL L + T D+++L A Sbjct: 9 LQTVNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVH--DMRSLAASLHR 66 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + R+LS +R F+YL RE D+P+ + +PK +RLPK L QV LL A Sbjct: 67 QGKSGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDA 126 Query: 125 PLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + +PL LRD+A++E+LYA GLR++EL+ L + I L + + V GKGNK R +P+G+ Sbjct: 127 GTSNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGK 186 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ + +L+ RP L+ + LF S+ ++++ + R+K +A+ G+D+ L P Sbjct: 187 PALTAVRRWLQ-VRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAH-LHP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL DLR VQ LLGH+DL+TTQ+YTH+ + L Q++ HPRA Sbjct: 245 HKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRA 299 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 170/294 (57%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-HHRGLTLATAQSDDLQALLAERLEGG 66 I+ F+ + +EKN + +T+ +Y D+ ++ H + +++ L + Sbjct: 29 IQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKA 88 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y S AR +S++R LF +L RE+ + A PK +LP L E +++ L +A Sbjct: 89 YARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFE 148 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + PL+ RD+A+LE+LYATG+RV E L ++DI LR G V GKGNKER VP+G A Sbjct: 149 GNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFAC 208 Query: 187 YWLETYLEHGRPWLLNGVSIDV--LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 L Y+E R LL + + LF + R +T ++ + A + + + PH Sbjct: 209 DALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASM-QKHIRPH 267 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLLN+GADLRVVQ LLGH LSTTQ+YTHV +RLR++++ HHPRA Sbjct: 268 DLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriaceae RepID=C8WGZ0_EGGLE Length = 323 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 162/300 (54%), Gaps = 10/300 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I+ F A+ +E+N + +TL AYR DL W + + A L+ L E Y Sbjct: 25 IDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGELDRAQY 84 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA--- 124 T+ R LSA+R F++L ++DP++ L PK P+ LP + + + +LL Sbjct: 85 SRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTVYGK 144 Query: 125 ------PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 ++ R+ A+LE LYA G RVSE GL +++ G V+V GKG+KER+ Sbjct: 145 RDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSKERI 204 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VPL + AV + Y RP +L + D F S R +M K AG+D Sbjct: 205 VPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAGLD- 263 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 E LSPH +RH FAT LL+ GADLR VQ +LGH+ LSTTQIYTH++ RL+Q+H + HPR Sbjct: 264 ESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHPRG 323 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 115/295 (38%), Positives = 170/295 (57%), Gaps = 6/295 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD--DLQALLAERLEGG 66 E F L +EK+ + T+ Y D+ E++ R Q D+++ LA+ + Sbjct: 18 EDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRD 77 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + AR +S++R ++YL RE + +P + +PKL ++LP L E ++ LL+ P Sbjct: 78 LSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPD 137 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 L RD+A+LE LY+TG RVSELVGLT++ + L ++GKG KERLVPLG V Sbjct: 138 CTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCV 197 Query: 187 YWLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +E YL H R L+ +F + R + ++ ++ + Y + + + +SP Sbjct: 198 AAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTAL-QKHVSP 256 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H +RH FATHLL+HGADLR VQ LLGH LSTTQIYTHV ERL ++++HHPRA Sbjct: 257 HTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 173/295 (58%), Gaps = 8/295 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERL 63 L+ +E FL L +E+ ++ +TL+AYRRDL+ ++ W +G +A S L+ + Sbjct: 28 LSAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEH 87 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S R LSA R + +L + P+A L +PK P++LP+ L + RL++ Sbjct: 88 RRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVE 147 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P D PL LRD+A+LE+ Y++GLR+SEL L D+ L G+V V+GKG K+RLVP+G Sbjct: 148 VP-TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGS 206 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 AV L + G + +FP + ++++ RIK AV G+ + + P Sbjct: 207 HAVAALRAWQRDS-----GGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGM-FKHVHP 260 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FA+H+L DLR VQ LLGHSD++TTQIYTH+ + L +++ HPRA Sbjct: 261 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRA 315 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 183/298 (61%), Gaps = 18/298 (6%) Query: 14 ALWLE----KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 ++WL+ +N +E+T+ AY+RDL+ + + L L ++ DL+ LA R+E + Sbjct: 16 SMWLKERIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEKDQLS 75 Query: 70 TSS-ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 +SS R L+++R+ ++ + ++ + +PS + P+ LP + V ++L D Sbjct: 76 SSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAPPD 135 Query: 129 QPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 +P+E LRDKA+LE+LY++GLR++EL GL + DI + ++R+ GKGNK R+VP G++ Sbjct: 136 KPIEQQLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFGQK 195 Query: 185 A----VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 A + WL+ Y R W +F SQR ++T + +R+K A AG++ + Sbjct: 196 AKDSLIEWLKIY----RIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVD- 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 L PH+LRH FA+H+L+ DLR VQ +LGHS+LSTTQIYTHV ++L +++ Q HPRA Sbjct: 251 LHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRA 308 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 167/292 (57%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E+F+ L EK L+ + R+ L +L LA D L A L + G Sbjct: 5 LERFIRFLAAEKGLSTAYQLSVRQTLEEFARFLEMDNTGLAQTGIDTLSAFLRHLQDRGM 64 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S + +R F++L E DPS L P+ LP L + V LL++ I Sbjct: 65 ARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLESIDI 124 Query: 128 -DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL RD+A+LE++YA G+RVSE++ + + VRV+GKGNK RLVP+G A+ Sbjct: 125 QDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGRSAL 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YLE GRP L+ + +F + R + +TR+ ++ A AG++ + + PH+L Sbjct: 185 DALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLE-QHVFPHIL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR++Q +LGH+D+STTQIYTH+ +RL +H + HPR Sbjct: 244 RHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPRG 295 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 179/330 (54%), Gaps = 45/330 (13%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +I+QFL+ + +E+ L+ T+ +Y DL+ WL + +D+ + +E Sbjct: 12 KIQQFLNHISVERGLSPKTVESYESDLTKYTNWLRE------ARKINDVNEITQLDIEEY 65 Query: 67 YKATSS-------------ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDL 113 +A SS AR ++++ +++ DPSA + +PK + LP L Sbjct: 66 VRAMSSQAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVL 125 Query: 114 SEAQVERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 S ++VER++ A + LRD+A++E LYATG RVSE VGL DI L + VVR+ Sbjct: 126 SISEVERVIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLS 185 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWL------------------LNGVS----IDV 208 GKG K+RLVP+G+ AV L YL + RP L LN S V Sbjct: 186 GKGQKQRLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHV 245 Query: 209 LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLL 268 +F ++R + ++RQ+ W I +A I E L PH LRH+FATHL++ GAD+R VQ LL Sbjct: 246 IFLNKRGKSLSRQSAWEAISRAGKMAKIGKE-LHPHTLRHSFATHLISGGADVRTVQELL 304 Query: 269 GHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 GH+ ++TTQIYTH++ + L + + HPRA Sbjct: 305 GHASVTTTQIYTHISPDALMEAYVMSHPRA 334 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 179/305 (58%), Gaps = 20/305 (6%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 K++ +I+ F L E+N + +TL AY+RD+S +L + L + A D++ L E Sbjct: 21 KENNEKIDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEE 80 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLY-----REKFREDDPSAHLASPKLPQRLPKDLSEA 116 + AR L+ + +++L +E F E P AS K +++P L+E Sbjct: 81 LGNKKLSRATLARKLAVLHSFYKFLIINKIIKENFIESMP----ASLKKDKKVPSFLTEN 136 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 +++ LL P L+ RD+AM+E+ Y+ GLR+ ELV L + +I VV V GK NKE Sbjct: 137 EMQMLLNLP----DLKPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKE 192 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV---LFPSQRAQQMTRQTFWHRIKHYAVL 233 R+VP+G+ ++ ++ Y+ R G+ D+ +F S RA+++ ++T + Y V Sbjct: 193 RIVPVGDICLHAIKDYINKRRNL---GLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVK 249 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG ++K+SPH LRH FATH+L+ G DLR VQ +LGH +LS+TQIYTHV E L++++++ Sbjct: 250 AGF-TKKVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKE 308 Query: 294 HHPRA 298 HPRA Sbjct: 309 THPRA 313 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 193 bits (490), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 184/291 (63%), Gaps = 6/291 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++QFL+ + EK L+E T+ Y+ D++ ++ ++ + LT S+D++ L++ G Sbjct: 6 LDQFLNYIKFEKRLSELTIKNYQNDINRLI-LINDKKLT--EFNSEDIRLSLSKLHASGL 62 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 S +R+LS+ R F + + + + DP++ + +PK ++LP+ LS QV L+ P Sbjct: 63 SGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQT 122 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 + ++ RD+A+LE Y++GLR+SELV + +SDI + ++V+GKGNK R+VPLG +A+ Sbjct: 123 N-FIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKAIE 181 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ ++ R L V + LF +Q+ +++T + +R+K +A I E + PH+LR Sbjct: 182 ALDLWILQ-RNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNI-PENIHPHLLR 239 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FA+H+L DLR VQ LLGHS++STTQIYTH+ + L +++ Q HPR+ Sbjct: 240 HSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRS 290 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 113/301 (37%), Positives = 180/301 (59%), Gaps = 11/301 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQS-DDLQALL 59 M+ + + I +F+ +L KN + +TL AY DL + ++ LT A + L+ L Sbjct: 1 MESNASLINKFILSLQ-SKNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYL 59 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 EG YK + R +S +R +YL + + +++P L PK + LPK L++ + + Sbjct: 60 GVTSEGDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETD 119 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RL+ L RDKA+ E++Y++GLR SE+ GL++ DI L GVVRV+GKG+KERLV Sbjct: 120 RLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGV--SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 P+ + A+ L+ YL GV S D LF ++ ++T + +K+ + A + Sbjct: 180 PITDLAIEALKEYLS------TRGVYNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANL- 232 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + K++ H LRH+FATH+LN+G DLR +Q +LGH LS TQ+YTHV+ +RL++++ Q HPR Sbjct: 233 ARKVTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPR 292 Query: 298 A 298 + Sbjct: 293 S 293 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 171/291 (58%), Gaps = 5/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA-QSDDLQALLAERLEGG 66 I+ FL + EK L+ NT+ AY RD+ + + + A + + L A L Sbjct: 16 IKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEPEHLIAFLGSLKSAD 75 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y ++ +R L +++ F +L RE E +PS L SPKL Q LP L +V+ L+ P Sbjct: 76 YATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQPD 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +RD+A+ E+LY +GLRVSE+ LT+ S+ +RV GKG+KER+VP+G +A+ Sbjct: 136 NKTAKGVRDRAIFELLYGSGLRVSEVCTLTI--YSIDDQYIRVYGKGSKERIVPIGSQAL 193 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL R W + LF + R + M R + W IK YA AGI ++ +SPH L Sbjct: 194 MAVDQYLSLYR-WQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAGI-TKTISPHTL 251 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FATHLLN+GADLRV+Q LLGH+++S+T YT V++ L++ + HP+ Sbjct: 252 RHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPK 302 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 192 bits (489), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 176/294 (59%), Gaps = 9/294 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQALLAERLEGG 66 ++Q+LD L K + +T+NAY RD+ ++E L +G + A AQ+D ++ + + Sbjct: 12 VQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTARKTH 71 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S R+LS+ R F YL ++ + +P + +PK P++LP L Q+ ++L A + Sbjct: 72 LAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVLNATI 131 Query: 127 I-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D P+ +RDKAMLE+ Y+ GLR++EL L + DI L + V GKGNK R +P+G +A Sbjct: 132 TSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPIGRQA 191 Query: 186 VYWLETYLEH-GRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + L+++L+ G+ L + LF + R Q+M + R+ A +A + + PH Sbjct: 192 ITALKSWLQQRGQ---LKCHDANALFINHRGQRMGVRGIQMRM---ANMAATHGQHIHPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH+FA+HLL DLR VQ LLGHS++STTQ+YTH+ + L +++ + HPRA Sbjct: 246 MLRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRA 299 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 192 bits (489), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 121/303 (39%), Positives = 172/303 (56%), Gaps = 15/303 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I+ F L + L++NT AYR DL + L G L +DL+ +++ + Sbjct: 7 IDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQSSKR- 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL---- 122 + +S AR AVR F + + +P+A L +PK+P LP LSE+Q E+L+ Sbjct: 66 HARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVD 125 Query: 123 -QAP------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 Q P + Q + LR+ AMLEVLYATG+RV+ELVGL + D++ ++V GKGNK Sbjct: 126 EQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNK 185 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R+VP G A + +LE GRP L+ S D LF + ++ ++ + A AG Sbjct: 186 QRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAG 245 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + +SPH LRH+ ATHLL+ GADLR VQ LLGHS L TTQ YTHV+ E+L+ + Q Sbjct: 246 V--PDISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAF 303 Query: 296 PRA 298 PRA Sbjct: 304 PRA 306 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 192 bits (489), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 163/291 (56%), Gaps = 5/291 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 E FL+ L +E+N +E+TL +Y+ DL ++L L L T + D + L+ K Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLK 65 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 TS +R +S +R ++Y +P L PK + LP+ E ++E L + D Sbjct: 66 RTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEED 125 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 LRD+ +LE+LYATG+RVSELV + DI V V+GKG+KER VP G Sbjct: 126 TSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQS 185 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV-LAGIDSEKLSPHVLR 247 +E YLEH +P + + D L + + + +T + + + AG+ ++ PH LR Sbjct: 186 IENYLEHFKP--IQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVS--EIHPHKLR 241 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H FATHLLN GADLR VQ LLGH +LSTT YTHV+ ++LR+++ HPRA Sbjct: 242 HTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRA 292 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 177/311 (56%), Gaps = 21/311 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 + QFL + +E+ L++ T+ AY DL V WLH +G+ L + ++ +A + G Sbjct: 8 VRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDSG 67 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA-P 125 A S AR L+++ ++ E DD +A + +PK LP LS +V RL+ + P Sbjct: 68 ESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMDSIP 127 Query: 126 L--------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 L D P+ LRDKA+LE +YATG RVSE G+ + DI L V R++G Sbjct: 128 LSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLMG 187 Query: 172 KGNKERLVPLGEEAVYWLETYLEHGRPWLLN----GVSIDVLFPSQRAQQMTRQTFWHRI 227 KG+K+RLVP+G A L YL GRP L + +F ++R ++++RQ+ W I Sbjct: 188 KGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVWEII 247 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 + A I ++ L PH LRH+FATHL+ GAD+R VQ LLGH+ ++TTQIYTHV+ E L Sbjct: 248 RTAGERAHI-TKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENL 306 Query: 288 RQLHQQHHPRA 298 + + HPRA Sbjct: 307 IEAYLTAHPRA 317 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 174/300 (58%), Gaps = 11/300 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M + R++ FL L +E+NL+ T+ +Y+ DL + WL G+ L Q + L L Sbjct: 1 MSLNSNRLDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGIDLKDLQPEKLDEFLT 60 Query: 61 ERLEGG---YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 L G Y TS AR S++R +Y+ + + + LA+PKL LP+ L+ + Sbjct: 61 --LTAGQEEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREE 118 Query: 118 VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 ++ + ++ + LRD A++E++Y+ GLR+SE +G+ +S I L + IGKGNK+R Sbjct: 119 IDSVFESA-ANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQR 177 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 LVPLG +A L ++E GRP L + D + + + M+R W ++ + + Sbjct: 178 LVPLGSKAKENLRAWIEEGRP--LTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMHL--- 232 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 S+++SPH RH+FATH L G DLRV+Q LLGH+D+STTQIYTHV + ++Q H+ HPR Sbjct: 233 SKQVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPR 292 >UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales RepID=A6TR58_ALKMQ Length = 294 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 174/296 (58%), Gaps = 11/296 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLAER 62 I F+ L EK+L+ NTL +Y+RD+ +L H T T L L E Sbjct: 5 INNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKE- 63 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A++ +R L+++R + YL K + DP+ +L SPK+ ++ P L+ +VE LL Sbjct: 64 ---GRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLL 120 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 Q PL P +RDKAMLE+LYATG+RV+EL+ L + D+++ G +R KER++P+G Sbjct: 121 QQPLNTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCCN-NTKERVIPIG 179 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 ++ L+ Y+ + R LF + ++TRQ FW IK Y A I+ + ++ Sbjct: 180 TLSLIALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIE-KSIT 238 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHL+ +GADL+ VQ +LGHSD+STTQ+Y + +++ ++ + HPRA Sbjct: 239 PHTLRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/293 (40%), Positives = 172/293 (58%), Gaps = 11/293 (3%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT---LATAQSDDLQALLAERLEGGY 67 F + L +E+N + T AY DL ++ +H G+ L T D+ A G Sbjct: 9 FFEMLSVERNASPRTREAYGHDL---LDLRNHAGIDADGLLTLNEGDIAGFFAALDARGL 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP-L 126 +++ R +AVR+ +++ RE ++DPS +A+ K + LPK LS +V+ L+ A Sbjct: 66 ASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADA 125 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D R + ++E+ YA+G+RVSE+V L + + + V GKG ERLVPL A Sbjct: 126 KDAHQATRLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSAR 185 Query: 187 YWLETYLEHGRPWLLNGV--SIDVLFPSQRAQ-QMTRQTFWHRIKHYAVLAGIDSEKLSP 243 ++ YL+ RP LN + LF S+ A+ +TR+ + A+ AGID ++SP Sbjct: 186 AAIKDYLDI-RPLFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 HVLRHAFATHLL GADLRVVQ LLGH+D+STTQ+YTHVATERL+++ + HHP Sbjct: 245 HVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHP 297 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/331 (39%), Positives = 175/331 (52%), Gaps = 42/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT----------------LATAQ 51 + FL +L +EK+ +++TL +YR DL+ WL G T A Q Sbjct: 17 VAGFLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDFAAQQ 76 Query: 52 S--------DDLQAL--------LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 95 D+L+A+ LA + + AR LS +R ++YL R + Sbjct: 77 EEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTN 136 Query: 96 PSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGL 155 P A + +PKL +RLP L E ++ LL P PL LRD+A+LE+LYATGLRV ELV L Sbjct: 137 PVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVAL 196 Query: 156 TMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL-LNGVSIDVLFPSQR 214 DI +G V V GKG KER VP+G EA+ L YL G P L + + P + Sbjct: 197 NRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAK 256 Query: 215 AQQMTRQTFWHRIKHYAVLAGID--------SEKLSPHVLRHAFATHLLNHGADLRVVQM 266 Q + R+ +V +D S ++SPH +RH FATH+LNHGADLR VQ Sbjct: 257 -QPLFLNKLGGRLSDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRAVQE 315 Query: 267 LLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +LGH+ LSTTQIYTHV T+RLR + + HPR Sbjct: 316 MLGHASLSTTQIYTHVTTQRLRTEYLRAHPR 346 >UniRef50_Q2GLS7 Tyrosine recombinase XerD n=6 Tax=Rickettsiales RepID=Q2GLS7_ANAPZ Length = 311 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 174/300 (58%), Gaps = 12/300 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I FL+ L K ++ENT+ +Y+ DL + ++L GL + A DL + Y Sbjct: 7 IRSFLEFLVSSKGVSENTVCSYKCDLEDLSQFLRRNGLKIVDASYGDLCEYIRNLNGRAY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 A + AR +SA++ L +LY+++ D S L S +L + LP+ +SE+ + LL Sbjct: 67 SAATVARRVSAIKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLLDIAKA 126 Query: 128 DQPLE-LRDKAMLEVLYATGLRVSELVGLTMSDISLR-------QGVVRVIGKGNKERLV 179 D E R A++ +LY++G+R+SEL+ L +I G + + GKGN+ERLV Sbjct: 127 DLSAEGKRLYAIVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIKGKGNRERLV 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDV--LFPSQRAQQ-MTRQTFWHRIKHYAVLAGI 236 L E A+ + YLE R + G + + LFP + Q ++RQ +K A+ AGI Sbjct: 187 LLNEVAMDSIRAYLEV-RKCFIAGENTESRWLFPGAKYDQCISRQRVGQLLKELAISAGI 245 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 D EK+SPH RH+FATHLLN+G+++ +Q +LGH +LSTTQ+YTHVA+E+LR + + HP Sbjct: 246 DPEKVSPHKFRHSFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQLRDVLSRFHP 305 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 164/299 (54%), Gaps = 6/299 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 LA+I+ F+ + + L+ T+ AY + L +W + S DL++ LAE Sbjct: 11 LAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAEFRR 70 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G +T+ A LSA+R F++L R +PK + LP L+ ++ L A Sbjct: 71 DGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAALFDA 130 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P + P+ LRD AMLE+ ATG R+SEL L + D+ + + V ++GKG+KER+VPL Sbjct: 131 PDLSCPVGLRDAAMLELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPLYAR 190 Query: 185 AVYWLETYLEHGRPWL-----LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 A+ E YLE+GRP L L G + +F S R + M +R AGI S+ Sbjct: 191 AIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGISSD 250 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH +RH FAT LL GADLR VQ LLGH+ LSTTQIYTH+ +RL+ + HPR Sbjct: 251 -ITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHPRG 308 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 189 bits (480), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 173/294 (58%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD-DLQALLAERLEGG 66 ++ FL + +E+ + T++AY RD+ ++L +T S D++ L Sbjct: 6 MQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVLHREN 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y +S +R LS++R + +L K E +P A ++ K LP+ E ++E+ + + Sbjct: 66 YNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFINSID 125 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +Q L+ R+KA++EVLYATG+RVSEL LT+ + L ++ VIGKG+KER VP+G+ A Sbjct: 126 GNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIGDFAR 185 Query: 187 YWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 LETYLE GR L+ + +F + +T + ++ +G+ + K+ PH Sbjct: 186 TALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGL-TLKIHPH 244 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH FATHLLN+GAD+R VQ LLGH LS+TQIYTHV E L+Q +Q + PR+ Sbjct: 245 MLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRS 298 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 173/291 (59%), Gaps = 4/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + F+ L +E+ +A+N++ +YRRD+ ++L + ++DD+ L E G Sbjct: 27 LSSFVYHLKVERGMAKNSIESYRRDIG---DFLLFCPKEIGNYETDDITKYLLSLQEIGL 83 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS AR A+ + F +L + KL +LP L+ ++ +LL + + Sbjct: 84 LNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLLNSLPV 143 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 PLE+R+K M+E+LYATG+R+SEL+ +++ D++L + V+ V GKG+K+R VP + Sbjct: 144 KTPLEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRYVPYVDTLDE 203 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 YL+ RP LL ++LF + R ++M+R FW +I AVL ++++PH R Sbjct: 204 LFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFW-KILRKAVLEANIKKEVTPHTFR 262 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL G +LR+VQ LLGHS + TTQIYTH+ +RL + ++++HPRA Sbjct: 263 HSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 173/300 (57%), Gaps = 16/300 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE +LD L K +ENT+ AYR DL +V+ L T+ ++ A+ L G+ Sbjct: 35 IEDYLDFLTFTKGRSENTVKAYRNDLHSLVDGL----TTVDQLTLHHIRRWQADALRAGH 90 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S +R SAVR ++L + DP++ L+SP+ + LP+ L+ Q +L + Sbjct: 91 ARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLEV 150 Query: 128 ----DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + P+ LRD AM+E +Y TG+RVSEL L + D+ + V ++GKGNK+R+VP GE Sbjct: 151 GAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPFGE 210 Query: 184 EAVYWLETYLEHGRPWLL-NGVSIDV---LFPSQRAQQMT-RQTFWHRIKHYAVLAGIDS 238 A + L+ +++ GRP + NG D +F +R ++ RQ R + + + Sbjct: 211 SAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQV---RTVVHQATSTVSG 267 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH+ AT +L GADLRVVQ +LGH+ L+TTQIYTHV +ERL+ + Q HPRA Sbjct: 268 GDVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/283 (42%), Positives = 156/283 (55%), Gaps = 8/283 (2%) Query: 22 AENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKATSSARLLSAVR 80 + NT+ YR DL ++ H G TL + ++A LA+ G A + R SA R Sbjct: 35 SPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGASAATMQRRWSAAR 94 Query: 81 RLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL-----QAPLIDQPLELRD 135 F++ E DP+ L S K+P+RLP L Q +L QA + P RD Sbjct: 95 VFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGARD 154 Query: 136 KAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEH 195 A+LEVLY GLRV EL GL + D+ + V+V GKG+KER VP+G A+ ++T+L Sbjct: 155 AAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMGAPALRAIDTWLPR 214 Query: 196 GRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLL 255 W+ S LF R +++ Q R+ H + A DS L PH LRHA ATHLL Sbjct: 215 REEWV-GPHSGQALFLGARGRRID-QRVVRRVVHTDLRAEPDSPDLGPHGLRHAMATHLL 272 Query: 256 NHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 GADLR VQ +LGH L+TTQIYTHV+TERLR +Q HPRA Sbjct: 273 EGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/296 (40%), Positives = 162/296 (54%), Gaps = 7/296 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E+F + L L+ + +T AY DL ++ + RG L L++ L+ GG Sbjct: 8 LEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGV 67 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK----LPQRLPKDLSEAQVERLLQ 123 T+ AR SAV+ + R DP+A L PK LP L +D + + Sbjct: 68 ARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKN 127 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P+ LRD+ ++E+LYATG+RVSEL GL + D+ + +VRV+GKGNK+R VP G Sbjct: 128 GAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGA 187 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM-TRQTFWHRIKHYAVLAGIDSEKLS 242 A L +L GRP L N S L R +++ RQ + H + A + + Sbjct: 188 PAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQA--RTVVHQTIAAVSGAPDMG 245 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+ ATHLL GADLRVVQ LLGHS L+TTQ+YTHVA RLR +H Q HPRA Sbjct: 246 PHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/309 (39%), Positives = 177/309 (57%), Gaps = 21/309 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR----GLTLATAQSDDLQALLAERL 63 I +FL L E++L+ NTL AYRRDL WL G +++ +A Sbjct: 19 IGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLT 78 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S AR LSAVR +++++R++ + +P+ + SPKLP+ LP L Q E L+Q Sbjct: 79 RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138 Query: 124 -APLIDQPLE---LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 A Q LE +R+ AMLE+ Y++GLR+SEL G+ ++D+ L V+V GKG KER+V Sbjct: 139 HAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIV 198 Query: 180 PLGEEAVYWLETYLEHGRPWLLNG--------VSIDVLFPSQRAQQMTRQTFWHRIKH-- 229 PLG+ A L YL + V+ +F S+R +++ + H + Sbjct: 199 PLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLM 258 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 AV G D L+ H LRH FATHL++ GADLR VQ LLGH+ +STTQIYTH + +RL++ Sbjct: 259 SAVSEGAD---LTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKK 315 Query: 290 LHQQHHPRA 298 +++Q HPRA Sbjct: 316 VYRQAHPRA 324 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/301 (40%), Positives = 177/301 (58%), Gaps = 15/301 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I QFL+ L E+ L++N++ +Y+RDL +L + L+ +D+++ + E Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAENSL 63 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +A S R +S ++ +++L E +P ++ PK +LP+ LS ++ LL+ Sbjct: 64 QARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQ 123 Query: 128 D-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR-------VIGKGNKERLV 179 D P R AM+ +LYA+GLRVSELV L +SDI L V R V+GKGNKER++ Sbjct: 124 DISPEGARLNAMIHLLYASGLRVSELVSLKLSDI-LSNKVSREVKKIFSVLGKGNKERII 182 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGV---SIDVLFPSQRAQ-QMTRQTFWHRIKHYAVLAG 235 + E A+ L YL R +N ++ LFPS A MTRQ F +K A+ AG Sbjct: 183 VINEPAINSLVKYLV-VRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 ++ E +SPHVLRH+FA+HLL GADLRV+Q LLGH+D+STTQIYTH+ T L++ HH Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKA-LLHH 300 Query: 296 P 296 P Sbjct: 301 P 301 >UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepID=Q2J882_FRASC Length = 443 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/322 (41%), Positives = 180/322 (55%), Gaps = 33/322 (10%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG- 66 IE++L L E+ LA N++ AYRRDL + L GL A + A A L G Sbjct: 93 IERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFAAVLRTGD 152 Query: 67 -----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 A S AR+L AVR L ++ E +D S + P P+RLPK LS QV + Sbjct: 153 DTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSIDQVVAV 212 Query: 122 L------------------QAPLIDQPLE-------LRDKAMLEVLYATGLRVSELVGLT 156 L Q QP+E LR A+LE+LY TG R+SE VGL Sbjct: 213 LAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISEAVGLD 272 Query: 157 MSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQ 216 + D+ L VR+ GKG ++R+VPLG A+ + YL GRP L+ S +F S+R Sbjct: 273 VDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVFLSRRGN 332 Query: 217 QMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT 276 +++RQ+ W ++ A+ AG+ E +SPHVLRH+FATHLL+ GAD+RVVQ LLGH+ +STT Sbjct: 333 RLSRQSAWSVLRTAALAAGV--EGVSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTT 390 Query: 277 QIYTHVATERLRQLHQQHHPRA 298 QIYT V +RLR+++ HPRA Sbjct: 391 QIYTLVTVDRLREVYAASHPRA 412 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 158/288 (54%), Gaps = 2/288 (0%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 F + L E+ L++NT+ AY D+ + + D + + + G Sbjct: 6 FKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSPK 65 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 S R AV+ ++YL ++DP L SPKL Q++P+ L++ ++ RLL P Sbjct: 66 SVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFP-PKTF 124 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 E+R +LE+ YA GLRVSELV L + ++L+ V GKG K+R +P+ + AV LE Sbjct: 125 AEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVLE 184 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 YL +L S +F ++ ++++R + W + LAGI+ L PH+ RH F Sbjct: 185 IYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIE-RSLHPHLFRHTF 243 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ATHLL GADLR +Q +LGH+DL TTQIYTH+ + L++ H++ HPR Sbjct: 244 ATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPRG 291 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 164/291 (56%), Gaps = 6/291 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ F + L + + +T AY DL +L GL+L +D+ A R + Sbjct: 9 LDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAHREDLAM 68 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + S +R+LSA+R ++L R DP L P+LP+ LP L E ++ RLL+AP Sbjct: 69 R--SRSRVLSAIRSWSRFLKRRGLPAIDPDT-LPVPRLPRNLPGVLDEEEILRLLEAPDP 125 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 +RD+A+L YA+GLRVSEL LT+ ++L + +RV GKG KER+ L + Sbjct: 126 KTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDGLSCA 185 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ YLE RP + LF ++R TRQ W IK YA GID +SPH LR Sbjct: 186 RLKLYLERVRPS--TNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGID-RSVSPHTLR 242 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL+HG D+R +Q+LLGHSD+ TT+IYTHV L + ++HPR Sbjct: 243 HSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRG 293 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 168/293 (57%), Gaps = 7/293 (2%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGYKA 69 F++ L +EKN + T++ Y + V +++ +G+ D + L E E G Sbjct: 11 FIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKGLTR 70 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 + ++ +SA+R +++L RE+ +++P ++ PK +R+P L E +++ L + Sbjct: 71 RTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSDVST 130 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 PL R++A+LE+LYATG+RVSEL L SD+ L V V GKG+K+R VP G A L Sbjct: 131 PLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAHEAL 190 Query: 190 ETYLEHGRPWLLNGVSID----VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 TYLE GR L D +F +QR +T + + A + + PH+ Sbjct: 191 ITYLEDGR-LKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKAS-GTLHIHPHM 248 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLLN GADLR VQ LLGHS+LS+TQ+YTHV+ + LR+ + HHPRA Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHPRA 301 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 186 bits (472), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 172/296 (58%), Gaps = 8/296 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALLAERLEGG 66 +E+F L EK + +T+ Y DL +L R L+L + ++ L L Sbjct: 8 LEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYLGT-LSTD 66 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + S AR L++++ ++YL R+K P+ + SPKLP+ LPK L +V +L P Sbjct: 67 HAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAILDMPD 126 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + L LRD+A+LE+LY GLR+SEL GL + DI +VRV+GKG+KERLVP+ +++ Sbjct: 127 VKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLVPVNAQSI 186 Query: 187 YWLETYLEHGRPWLLNGVSID----VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 LE YL R LL + D +F + R ++T ++ + Y VL + K+S Sbjct: 187 RALEAYLAR-RGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTY-VLKCALTRKVS 244 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH +RH+FATHLL GAD+R +Q LLGHS LSTTQ YT V E+L+Q++ HPRA Sbjct: 245 PHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHPRA 300 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 171/295 (57%), Gaps = 6/295 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERLE--G 65 ++FL L +E+ +E T AY D+ +L G L A+ ++ L+ + Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALADHRS 67 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y S +R ++++R +QYL +E+ +++P +++ K RLP+ E +++ L + Sbjct: 68 SYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSV 127 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D PL+LR++A+LEVLY +G+R+SE L++SDI V+ + GKGNKER PLG A Sbjct: 128 AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFA 187 Query: 186 VYWLETYLEHGRPWLLNGV--SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 L+ Y GR L+ D++F + + +T + + + +DS+ + P Sbjct: 188 QDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD-IHP 246 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH FATHLLN+GADLR VQ LLGH++LSTTQIY HV E L++ ++ HPRA Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 121/302 (40%), Positives = 164/302 (54%), Gaps = 13/302 (4%) Query: 8 IEQFLDA----LWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAE 61 +E LDA L LE+ +++T AY DL + + + R G L + L+A L+ Sbjct: 1 MESVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSA 60 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G T+ AR SAV+ + R DP+ L PK + LP L + Q Sbjct: 61 QAAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDA 120 Query: 122 LQAPLID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 L A PL LRD+ ++E+LYATG+RVSEL GL + D+ + ++RV+GKG+K+R Sbjct: 121 LDAANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQR 180 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM-TRQTFWHRIKHYAVLAGI 236 VP GE A L +L GRP L S L R +++ RQ + H V A Sbjct: 181 TVPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQA--RTVVHETVGAVA 238 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH LRH+ ATHLL GADLR+VQ LLGHS L+TTQ+YTHV RLR +H Q HP Sbjct: 239 GAPDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHP 298 Query: 297 RA 298 RA Sbjct: 299 RA 300 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 168/285 (58%), Gaps = 5/285 (1%) Query: 15 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSAR 74 L LEK+L++NT++AY DL ++ +L + + + ++L+ A + G S AR Sbjct: 18 LKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHDIGIHPRSQAR 77 Query: 75 LLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLE-- 132 +LS +R +++L E + + DP+ L SP+ +LP+ ++ +++ L+ + ID+ + Sbjct: 78 ILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGS--IDRSTKEG 135 Query: 133 LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETY 192 R++A+LE LY+ GLRVSEL L +S++ +G ++V GKG+K+RLVP+ A+ + Y Sbjct: 136 QRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPRAIKEIRLY 195 Query: 193 LEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFAT 252 + D +F S + ++R +H IK A G+ +K+SPH RH+FAT Sbjct: 196 FTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGL-KKKISPHTFRHSFAT 254 Query: 253 HLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 HLL GA+LR +Q +LGH + TT+IYTH+ LR +HHPR Sbjct: 255 HLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPR 299 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 173/294 (58%), Gaps = 13/294 (4%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEW----LHHRGLTLATAQSDD--LQALLAERLE 64 D +N +++TL AY +DL + L + Q D +++ L E + Sbjct: 9 LFDGHLKTQNRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEMTD 68 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + S AR LSA+R F++L RE + +P +A+PKL ++LP LS +++RL++ Sbjct: 69 RGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLIRT 128 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P L RD+ +LE+LY +GLRVSEL L DI ++RV GKGNKER+VPL Sbjct: 129 PDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLTNY 188 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ YLE + + L + + +++ ++ + A+ AG+ S+ L PH Sbjct: 189 ALEAARQYLE------MREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGL-SQHLHPH 241 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH+FATHLL+ GADLR VQ LLGH+ LS+TQIYTH+ ERLR++++Q+HPRA Sbjct: 242 MLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRA 295 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 131/332 (39%), Positives = 180/332 (54%), Gaps = 38/332 (11%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT----LATAQSDDLQALLA 60 +A + +LD L +E+ +A NT+ +YRRDL+ +++L G T + A D L Sbjct: 21 VAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVADVTAADVSDFLVCLR 80 Query: 61 ERLEG--GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 +G A+S+AR + A R ++L E E DPS + P +RLPK L + Sbjct: 81 TGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRLPKALPVEAI 140 Query: 119 ERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG---------- 165 RLL A D P LRD+A+LE+LYATG R+SE+VGL + DI L G Sbjct: 141 GRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDDIDLGPGRLAGRSSTDP 200 Query: 166 --------------VVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV--- 208 VVR+ GKG KERLVP+G A+ LE YL GRP L Sbjct: 201 TDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVLAAAGRGAGPAR 260 Query: 209 --LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQM 266 LF + R +++RQ+ W + A AG+ + +SPH LRH+FATHLL GAD+R VQ Sbjct: 261 GALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRSVQE 320 Query: 267 LLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LLGH+ ++TTQIYT V + LR+++ HPRA Sbjct: 321 LLGHASVTTTQIYTLVTVDALREVYVTAHPRA 352 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 173/311 (55%), Gaps = 17/311 (5%) Query: 2 KQDLARIE----QFLDALWLEKNLAENTLNAYRRDLSMMVEWL---HHRG------LTLA 48 KQDL + ++L L ++L+ T + YRRDL +V H G ++L Sbjct: 7 KQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLT 66 Query: 49 TAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQR 108 S D++ +A G S AR+LSA R ++YL R +P + PK P + Sbjct: 67 RLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHK 126 Query: 109 LPKDLSEAQVERLLQ-APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 LP LS + +LL P + L RD A+ E+ Y++GLR++EL L +DI G V Sbjct: 127 LPHALSPDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTV 186 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 RV GKGNK R+VP+GE A+ L+ +L WL+ G + LF SQR +++ +T +R+ Sbjct: 187 RVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGET--ALFLSQRGRRIHPRTIAYRL 244 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 A L +DS ++ PH LRH+FA+HLL DLR VQ +LGHS + +TQ+YTH+ + L Sbjct: 245 HQRAQLQNLDS-RVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHL 303 Query: 288 RQLHQQHHPRA 298 +++ Q HPRA Sbjct: 304 AKIYDQAHPRA 314 >UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019772C5 Length = 334 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 43/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 + FL L + L+ NT+ AY D+ + L RG+ L +DDL+ +A Sbjct: 7 LSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRD- 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL---- 122 + +S AR + +VR F + + E DP+A L +PKLP LP L+EAQ ERL+ Sbjct: 66 HARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVD 125 Query: 123 ------------------QAPLID------------QPLELRDKAMLEVLYATGLRVSEL 152 + P +D + + LRD AMLE+LYATG+RV+EL Sbjct: 126 DDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAEL 185 Query: 153 VGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLL-----NGVSID 207 VGL + D+ +RV GKG+K+R+VP G+ A L + EHGRP +L + Sbjct: 186 VGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTA 245 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 LF R +++ ++ + A +G+ +SPH LRH+ ATH+L+ GADLR VQ + Sbjct: 246 ALFLGMRGRRIDQRIVRDVVHRAARESGV--PDISPHSLRHSAATHMLDGGADLREVQEM 303 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGHS L TTQ YTHV+ E+L++ ++Q PRA Sbjct: 304 LGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 182/311 (58%), Gaps = 23/311 (7%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 +++ +LD L +E+++A NTL++YRRDL + L RG+ LA D+ L G Sbjct: 9 QLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRRG 68 Query: 66 GYKA-------TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 + S+AR L AVR L ++ E + D + + P +RLPK L+ +V Sbjct: 69 DPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEV 128 Query: 119 ERLLQA----PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 LL++ D PL LR++A+LE+LY+TG R+SE VGL + D+ + V + GKG Sbjct: 129 LALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKGG 188 Query: 175 KERLVPLGEEAVYWLETYLEHGR-------PWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 K+RLVP+G AV L+ YL GR P +L + +F + R +++RQ+ W + Sbjct: 189 KQRLVPVGRPAVQALDAYLVRGRSDLARRGPGML---ATPAIFLNARGGRLSRQSAWQVL 245 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 + A AGI S +SPH+LRH+FATHLL GAD+RVVQ L+GH+ ++TTQIYT V + L Sbjct: 246 QDAAEHAGITS-GVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQAL 304 Query: 288 RQLHQQHHPRA 298 R++ HPRA Sbjct: 305 REVWAGAHPRA 315 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 162/290 (55%), Gaps = 4/290 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + F + + E LAEN++ AY +D+ + + L + +L A + + G Sbjct: 7 VSNFTNWMQYEMGLAENSVKAYHQDIENYIAFTLK---PLVECGAQELVAYMTHLRKSGA 63 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + R +S + R + +L EK +P ++ P ++LP L+ +VE+L+ +P + Sbjct: 64 SIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPDM 123 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+ + E +Y+TG+R+SELVGL + D+ + + +++V GKG+K+R VP+ Sbjct: 124 SSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLAE 183 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 ++TYL+ L+ LF S+ +++ R+ W IK Y AGI + +SPH LR Sbjct: 184 KMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGI-KKNVSPHTLR 242 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FATHLL +GADLR +Q+LLGH DLSTT+ YT V + R HPR Sbjct: 243 HSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPR 292 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/288 (37%), Positives = 166/288 (57%), Gaps = 2/288 (0%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 ++ L +EK + +T++ Y++D+ + + H + D++ LA + GY Sbjct: 16 YMRYLQIEKGASPSTISQYQKDICAFFQNMDHTK-PVEDVNHQDIRRYLALLQKDGYARR 74 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 + AR L+++R L+++L RE + +P ++ +PKL ++LP L E +++ + A D Sbjct: 75 TVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTDSL 134 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 L R+ A++E+LYA+G+R SE GL + DI L + V+GKG KER +P+G AV L Sbjct: 135 LGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSFAVEALS 194 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 YL+ D LF + R +T + + A + S KL+PHV+RH F Sbjct: 195 LYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTS-KLTPHVIRHTF 253 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ATH+LN GADLR VQ LLGH+DL TQIYTHV +RLR +++ HPRA Sbjct: 254 ATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRA 301 >UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira RepID=XERC_LEPIC Length = 318 Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 106/295 (35%), Positives = 178/295 (60%), Gaps = 11/295 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQ---ALLAERLEG 65 ++F++ L +EKN ++NT+NAY DL E+ L + + D++ A LA++ E Sbjct: 28 KKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLAKKHEI 87 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-- 123 + S +R LS++R ++ L RE + +P+ L+ PK+ + +PK+ + E +L+ Sbjct: 88 DRR--SQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFE 145 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + + E+RD+AM+EVLY++GLRV ELV ++ +S V++V+GKG KER V G+ Sbjct: 146 SENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGK 205 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 EAV L+ YLE+ + I F +QR +++T + + + G + + ++P Sbjct: 206 EAVSSLQKYLEYRNVSFPDAEEI---FLNQRGKKLTTRGVRYILNERRKKMGWE-KTITP 261 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H RH FAT LL+ GA++R VQ LLGHS LSTTQIY V+ E++++++++ HP A Sbjct: 262 HKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHA 316 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 183 bits (464), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 173/298 (58%), Gaps = 8/298 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 I++F+ + +E+ L++ T++AY DL WL++ + + T D+++ + E Sbjct: 22 IQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYIRTLNEL 81 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G + AR L+++ +++ + D SA + +PK LP LS +V R+++A Sbjct: 82 GLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAA 141 Query: 126 L---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + +RD A+LE LYATG R+SE VG+ DI L + VV++ GKG+K+RLVP+G Sbjct: 142 GNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIG 201 Query: 183 EEAVYWLETYLEHGRPWL-LNGV-SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 AV L Y+E RP L L G + +F ++R ++RQ+ W + A +D + Sbjct: 202 GCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLD-KP 260 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 L PH LRH+ ATHL+ GAD+R VQ LLGH+ ++TTQIYTH++ + L + + HPRA Sbjct: 261 LHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRA 318 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 7/293 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD--LQALLAERLEG 65 ++QF + L EK L+ +T Y++ L M E LH GL A Q D ++ L + + Sbjct: 17 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLK-AWPQVDAGWVRQLAGKGMRE 75 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G KA+S A LS++R F +L +P+ +++P+ + LPK+L +V +LL+ Sbjct: 76 GMKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVN 135 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D PL +RD+A++E++Y GLR++ELV + + D+ LR G +RVIGKGNKER VP A Sbjct: 136 E-DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMA 194 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 V W+ +L+ R L + S LF S+ +++ ++ R+ + + S ++PH Sbjct: 195 VEWVGKWLK-VRSGLAD-PSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASH-ITPHK 251 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATH+L +LR VQ LLGH ++STTQIYTH+ + L ++ Q HPRA Sbjct: 252 LRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRA 304 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 163/298 (54%), Gaps = 10/298 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 Q L IE F D L L ++ T+ YR DL M + L +L+A L Sbjct: 22 SQMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHMAATIPD----LTEFTLPNLRAWLGR 77 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 +E G + AR ++V+ + + D +A L SPK+ + LP+ L E Q Sbjct: 78 AVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEF 137 Query: 122 LQAPLIDQPLELR-DKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 + + D E R D A+LE+LYATG+RVSEL GL + D+ + +VRV+GKG+KER++P Sbjct: 138 MGSAAADTEDEFRRDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIP 197 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G+ A LE +LE R + D +F R ++ + + A +AG D Sbjct: 198 FGKAAADALEQWLE-ARDRMAK--VEDAMFVGVRGGRIDARQIRRIVDRTAQVAGAD--H 252 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRH ATHLL+ GADLR VQ +LGHS L TTQIYTHV+++RL + +Q HPRA Sbjct: 253 LSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/282 (39%), Positives = 154/282 (54%), Gaps = 2/282 (0%) Query: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 + AE T +AY D V W L A L+ A E G T+ R L++ Sbjct: 32 RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRALRRYAAGLTEAGQAPTTVGRKLAS 91 Query: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 +R LF+ L + +P+ L++P+ QRLP L +V LL D L LRD+A+ Sbjct: 92 LRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTALALRDRAL 151 Query: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 E+ YA+GLR ELV L + I VRV GKG K R+VP GE A+ + YL+ RP Sbjct: 152 FELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALKAIARYLDRARP 211 Query: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA-VLAGIDSE-KLSPHVLRHAFATHLLN 256 L S LF S+ ++++ R++ +A AG+ + +SPH LRH+FATHLL Sbjct: 212 ALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHLLE 271 Query: 257 HGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +GADLR +Q LLGH+ +STTQ+YT V + RLR + HPRA Sbjct: 272 NGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHPRA 313 >UniRef50_UPI000196CAFB hypothetical protein CATMIT_02473 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196CAFB Length = 297 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 170/289 (58%), Gaps = 6/289 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ F L E+ L+ENT+ Y RD+ E++ + + D A E + GY Sbjct: 6 LKDFKSYLLFERGLSENTVQGYIRDIKAFYEYIDYDIKKFDLSHID---AYFCELKDDGY 62 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K TS R + ++R+ ++L R + +D + + PK ++LPK LS ++ +++++ Sbjct: 63 KVTSIRRKIVSLRQYNEFLSRTRGMQDIMTQY-DLPKTDKKLPKVLSLEEIIKVIKSIDD 121 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 P R+KAM+ +L TG+R+SELV L ++DI+ V V+GKGNKERL+PL EE Sbjct: 122 SNPAGKRNKAMMLLLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLDEETCS 181 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 ++ +Y+++ R + N + LF ++MTR+ F++ ++ + AG+ + +PH+LR Sbjct: 182 YVYSYMQNDRSF-FNKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGV-RDHFTPHMLR 239 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 H FAT LL + DLR +Q++LGH D+STT IYTHV ++ + ++HP Sbjct: 240 HTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHVTHRQILDDYNKYHP 288 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 121/298 (40%), Positives = 164/298 (55%), Gaps = 9/298 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG 65 +E+F L LE+ +E+T AY DL + +L R G L L++ LA Sbjct: 5 LEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAA 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G ++ AR S+V+ + R DDP++ L PK + LP L + Q L+A Sbjct: 65 GTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAA 124 Query: 126 LID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 PL +RD+ ++E+LYATG+RVSEL GL + D+ + ++RV+GKGNK+R VP Sbjct: 125 ESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPY 184 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM-TRQTFWHRIKHYAVLAGIDSEK 240 GE A L +L GRP L S L R +++ RQ + H V A + Sbjct: 185 GEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQA--RTVVHQTVSAVGGAPD 242 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH LRH+ ATHLL GADLRVVQ LLGHS L+TTQ+YTHV RLR +H Q HPRA Sbjct: 243 IGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 166/295 (56%), Gaps = 8/295 (2%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLH----HRGLTLATAQSDDLQALLAERLEGG 66 FLD L +E+ + T AY D++ + +L + + L+ S D++ L+E E G Sbjct: 13 FLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSELYEKG 72 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + + AR +S++R +++L + ++P + K Q LP+ + ++ ++ + Sbjct: 73 DGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKMFDVVM 132 Query: 127 IDQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 DQ L LR+ +LE+LY TG RVSE+ +T+ ++ VV + GKGNK R+VP G A Sbjct: 133 TDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVPFGRYA 192 Query: 186 VYWLETYLEHGRPWLLN--GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 L YL+ GRP L + + + LF +QR +T + +K +G+ E ++ Sbjct: 193 ADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQE-VTA 251 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+ RH FAT LLN+ ADLR VQ LLGHS LSTTQIYTHV T+ L++ ++ PRA Sbjct: 252 HMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRA 306 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/299 (37%), Positives = 172/299 (57%), Gaps = 16/299 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQ----ALLAERL 63 I F D L E+ + +T+N Y L + + Q + ++ AL +++L Sbjct: 20 ITLFSDYLKFERQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQGEHIRRYSMALRSKQL 79 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFRED----DPSAHLASPKLPQRLPKDLSEAQVE 119 G T S +L S +R L+++L + + +P+ + PK + LPK+L Q+ Sbjct: 80 SG---RTISLKL-SCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMA 135 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL+ P D+PL +RDKAM+E++Y++GLR+SELVG + DIS G + V GKGNKERL+ Sbjct: 136 RLLEIP-DDEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLI 194 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G +A+ L+ +L RP N + V S++ + RQ R++ + + GI S+ Sbjct: 195 PVGSKALNALKKWLII-RPQFANPDEVAVFLSSKKNRISVRQVRL-RMQEWGIKQGISSQ 252 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH LRH+FA+H+L DLR VQ LLGHS LS TQ+YTH+ + L +++ HPRA Sbjct: 253 -VHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRA 310 >UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=Thermoanaerobacteraceae RepID=XERDL_THETN Length = 290 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 171/293 (58%), Gaps = 10/293 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + +FL+ L K L++NTL +Y RD+ + +++ G+ +A+ + L + G Sbjct: 6 VGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQQGK 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + +R LS+++ + YL+ +K E+DPS + +PK+ ++ P L+ QV+ LL Sbjct: 66 SQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFDFG 125 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 LRDKA++E++YA+GL+VSE++ L + D++L G + V + KER++P+G AV Sbjct: 126 KDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVV--RSGKERVIPIGSYAVA 183 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA--VLAGIDSEKLSPHV 245 L+ Y+E GR LF + R +++TRQ W IK YA + G+ L+P++ Sbjct: 184 ALQEYIEKGRKPRKGE---KALFLNLRGKRLTRQGCWKIIKEYADKISPGLP---LTPNI 237 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LR +FA H+L +GADL+ VQ +LG+ + + V+ ++++++ + HPRA Sbjct: 238 LRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSLVSRSKMKEVYNKFHPRA 290 >UniRef50_B3CMG8 Site-specific recombinase, phage integrase family n=9 Tax=Wolbachia RepID=B3CMG8_WOLPP Length = 328 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 176/307 (57%), Gaps = 18/307 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE-RLEGG 66 I ++DAL EK+ +NTL +YR DL + ++L G TL A +++ + R + Sbjct: 15 ITYYIDALVSEKSSTQNTLESYRSDLHQLEKFLLEGGTTLVGASKANIKDYVNFLRTQKK 74 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSA----HLASPKLPQRLPKDLSEAQVERLL 122 YK +S +R +SA++ ++ L+ + + +P+ L +PK+ + LPK LS ++ L+ Sbjct: 75 YKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKVSRPLPKYLSVQEIFLLM 134 Query: 123 QA---PLIDQPLELRDK---AMLEVLYATGLRVSELVGLTMSDI------SLRQGVVRVI 170 + E+ K A+L++LY++G+RVSEL+ + + ++ + ++G + + Sbjct: 135 ETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCEVLHLVNGNGKEGYIIIK 194 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQ-MTRQTFWHRIKH 229 GK ++ER + E+A+ L+ YL L N D LFP + + +TRQ IK Sbjct: 195 GKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPGDKPNKPITRQRVGQLIKE 254 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 A ID K+SPHV+RH+ ATHLLN GA++ ++Q +LGH++LSTTQIYTH+A E+L+ Sbjct: 255 LARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANEKLKD 314 Query: 290 LHQQHHP 296 HP Sbjct: 315 KLADSHP 321 >UniRef50_C9XNU9 Putative tyrosine recombinase n=8 Tax=Clostridium RepID=C9XNU9_CLODC Length = 304 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 168/291 (57%), Gaps = 4/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE ++D + +K L+ENT+ +Y D+ +E+++ + + L +D+ + L + + Sbjct: 4 IEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNV 63 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR++S+++ YL+ ++P+ + PK+ + L+E ++ERLL P + Sbjct: 64 SIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKL 123 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 P +RDKA+ EVLY TG++VSELV + + DI L + +R++PL + Sbjct: 124 TTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKL 183 Query: 188 WLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +LE YL+ RP + + G LF S Q+ TRQ W IK Y+ LA ID + ++P +L Sbjct: 184 YLEKYLKEARPKMAVEGEK--SLFVSSLGQRFTRQGLWKVIKKYSNLANID-KNINPTML 240 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FA HLLN GA++ VV +LG+ +LS+ Q+Y + + +R+ ++ HPR Sbjct: 241 RHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPR 291 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/292 (36%), Positives = 178/292 (60%), Gaps = 12/292 (4%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKA 69 + D L +EK +++TL+ Y+R L + + L G+ T S ++ ++A+ + G A Sbjct: 15 YWDYLRIEKQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S A L A+R+ F YL R++ +P+ + +PK +RLPK++ Q+ +LL + + Sbjct: 75 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSD-SHE 133 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 P +LRD AM+E++Y++GLR+SEL GL + D+ L VR++GKGNKER+VP+G +A+ L Sbjct: 134 PSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEAL 193 Query: 190 ETYL---EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L +P + +F ++R +++ ++ ++ + G++S L PH L Sbjct: 194 NRWLAVRNQFKP------QDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESH-LHPHKL 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L DLR VQ LLGHS+L+TTQIYTH+ + L +++ HPRA Sbjct: 247 RHSFATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRA 298 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLE 64 IE FL L +++ L+ T AY DL + +L RG +LA +QA LA Sbjct: 22 IESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLYA 81 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++ AR L+A R F+Y R E++ +A + +PK QR P+ L+ Q +L Sbjct: 82 LGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLDT 141 Query: 125 P-------------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 P L RD A+ E+LY +GLR+SE +GL ++D+ L + VVRV G Sbjct: 142 PDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVFG 201 Query: 172 KGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231 KG +ER+ PL + +V L +LE G LF R ++ R+ RI+ Sbjct: 202 KGARERMSPLSDTSVTALRAWLEQRGTLAPEGEK--ALFVGARGGRLDRREAMRRIERLC 259 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 AG+ E +SPH LRH+FATHLL+ GADLR VQ LLGH L+TTQ YT V+ ERL L+ Sbjct: 260 RNAGV--EPVSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLY 317 Query: 292 QQHHPRA 298 + HPRA Sbjct: 318 DEAHPRA 324 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 172/303 (56%), Gaps = 17/303 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGY 67 + FL+ L +E+ + +T+ AY+RDL V +L G TLA DL+ + L G+ Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFV-RALGDGF 76 Query: 68 KA------TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + TS R L+A R +YL+ + ++ + KLP+RLP+ LS ++E L Sbjct: 77 ASFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEAL 136 Query: 122 LQAPLIDQPLE---LRDKAMLEVLYATGLRVSELVGLTMSDISLRQ--GVVRVIGKGNKE 176 L A P + LRD+A+LE LYA+G R+SE + L + DI +VR+ GKG KE Sbjct: 137 LAA--ASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKE 194 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 R+ LG +A L+ YL RP L G S +F + + M+RQT W I+ A A Sbjct: 195 RISMLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQ 254 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 ID + PH LRH FATHLL GAD+RVVQ LLGH+ ++TT+IYT V+ + L +++ H Sbjct: 255 ID-RPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAH 313 Query: 296 PRA 298 PRA Sbjct: 314 PRA 316 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 3/290 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD-LQALLAERLEGGYK 68 Q+LD L +++ A+ T+ +Y+R + ++L + S L+ L + E Sbjct: 13 QYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYLTKLYEKNLS 72 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 T+ LSA+R F YL +E+ D+P + S K+ +R P L ++ LL + Sbjct: 73 KTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDSIETK 132 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 L +R+KAM+E++YA+GLR SE+V L +S+I Q V+ + GKGNK+R VP + A W Sbjct: 133 DDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYVPFHDYAGEW 192 Query: 189 LETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L Y++ R L+ + +F ++ +T + + + L ++K+ PH +R Sbjct: 193 LIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYD-STKKIHPHTIR 251 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FATHLLN GAD+R VQ LLGH +LSTTQIYTH++ + L++++ + HPR Sbjct: 252 HSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPR 301 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 176 bits (447), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 167/293 (56%), Gaps = 4/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I +FL + +E+ ++ TL AY++DL+ ++ G L D++ LA E Sbjct: 34 IARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNEQA 93 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y TS R LS++R F Y + + E +P + + LP+ E ++ +L + Sbjct: 94 YAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDSLY 153 Query: 127 I-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + RD+ +LEVLYATG+RVSEL L++ ++L ++RV+GKGNKER+VPLG+ A Sbjct: 154 KREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGDSA 213 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + YL H RP + S +L + A RQ R+K ++ K+ PH Sbjct: 214 TQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQ-IRTRLKSLVEEQAMNL-KIYPHK 271 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLLN GADLR VQ LLGH++LS+TQIYTHV ++LR + + HPRA Sbjct: 272 LRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRA 324 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 176 bits (447), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 179/297 (60%), Gaps = 15/297 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD---LQALLAERLE 64 +E+F + L E+ L+ +T Y+R L+ + E L L++ Q D ++ + ++ + Sbjct: 10 LERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVE--LSVDNWQQVDAGWVRQIASKGMR 67 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G KA+S A LSA+R F +L + + +P+ +A+P+ + LPK+L ++ +LL Sbjct: 68 DGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLDV 127 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D PL +RD+AM+E++Y GLR++ELVG+ + ISL +G +RVIGKG+KER+VP Sbjct: 128 N-DDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSGL 186 Query: 185 AVYWLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A W+ +L+ L + +++ LF S+ +++ + R+ + + S + Sbjct: 187 AREWVAKWLK-----LRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSH-I 240 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PH LRH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L +++ + HPRA Sbjct: 241 NPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRA 297 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 97/295 (32%), Positives = 171/295 (57%), Gaps = 8/295 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 ++ I+ FLD L KN ++ T+N YRRDL + + + +T +++D+ + + Sbjct: 3 NIEHIDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDIT--KLENNDILMWVKKLH 60 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G + + R LS++R F +L + +++P+ + +PK ++LPK ++ ++ LL Sbjct: 61 AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + +E RD A ++LY+ G+R+SEL + + DI++ Q +RVIGKGNKER+V G Sbjct: 121 IKPSNN-IETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGS 179 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + + L +L + + LF SQ + +T ++ RI+ +A ++ + P Sbjct: 180 KTLINLNRWLNTRDTY---SPKCNFLFISQNGEHLTNRSIQKRIEIFA--QKYATKHIHP 234 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FATH+L+ DL V+ LLGH+D+S+TQIYTH+ ++L + + HPRA Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRA 289 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 165/311 (53%), Gaps = 25/311 (8%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEW-LHHRGLTLA--TAQSDDLQALLAERLE 64 I+ FL L ++ + T YR+ L W RG+ A DD + L Sbjct: 32 IKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRFLGR 91 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + A+R +++L R P +++ PK+ +RLPK L+ Q+ LL A Sbjct: 92 GNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVELLGA 151 Query: 125 PL--------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 PL I + RD A+LE +Y+ GLR+SEL GLT DI + +VRV Sbjct: 152 PLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLVRVR 211 Query: 171 GKGNKERLVPLGEEAVYWLETY---LEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 GKG KER VP+GE A+ + Y LE G S L +++A ++ + R+ Sbjct: 212 GKGKKERQVPIGEPALTAIRNYWSTLEQSP----GGGSPVFLGETEKAAALSPRVLQQRL 267 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 K Y LAG+D L+PH LRH++ATH+L+ GADLR VQ LLGH+ L TTQ+YTHV+TERL Sbjct: 268 KKYLALAGLDPS-LTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERL 326 Query: 288 RQLHQQHHPRA 298 ++ + HPRA Sbjct: 327 KRAYDSAHPRA 337 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 117/322 (36%), Positives = 174/322 (54%), Gaps = 40/322 (12%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQA--LLAER 62 A ++ FL L +E+N + +T+ AYR D+ + + + A +Q + QA ++ Sbjct: 3 AALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSSL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E G S R LSA+R F+Y+ R + D+P L K Q LP +S Q++ L Sbjct: 63 FEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLT 122 Query: 123 QA-------------PLIDQPLEL---RDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 +A D+ E RD AM+EV+Y+ GLR+SE GL M DI L G+ Sbjct: 123 KAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGI 182 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLE----------HGRPWLLNGVSIDVLFPSQRAQ 216 RV GKG KER+ LG + L Y + G P LN + + Sbjct: 183 ARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLN----------KFGK 232 Query: 217 QMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT 276 ++T ++F +K+Y + A + + L+PH LRH+FATHLL+ GADLR VQ +LGH +LSTT Sbjct: 233 RLTPRSFQRNLKNYLIAANLPPD-LTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTT 291 Query: 277 QIYTHVATERLRQLHQQHHPRA 298 QIYTHV+ ER+++++++ HPRA Sbjct: 292 QIYTHVSAERMKEVYKEAHPRA 313 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 176 bits (446), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 114/291 (39%), Positives = 161/291 (55%), Gaps = 5/291 (1%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL---ATAQSDDLQALLAERLEGGY 67 FL L ++ + T+ AY DL +L R D+ A LA+ G Sbjct: 15 FLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLHRRGL 74 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S R LSA+R +++L + K +DP A LA+PKLP+ PK L+ Q L++ + Sbjct: 75 AKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVETEIT 134 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 P LRD A+LEVLY +GLRVSE +GL + + L Q +VRV+GKG KERLVPL A Sbjct: 135 LDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTGPAAE 194 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L Y+E R +F +R +++R+ +K AV +G +SPH LR Sbjct: 195 RLARYIEQ-RGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCS-ISPHTLR 252 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FA+H+L GADLR VQ LLGHS +STTQ YTH+ ++ +++ HP A Sbjct: 253 HSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLA 303 >UniRef50_Q1NFM1 Integrase n=2 Tax=Alphaproteobacteria RepID=Q1NFM1_9SPHN Length = 310 Score = 176 bits (446), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 173/312 (55%), Gaps = 37/312 (11%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL------HHRGL-TLATAQSDD 54 ++D A I++FL+ + E+ + NTL AYR DL+ L GL TLAT + Sbjct: 3 QEDAALIDRFLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTLATHWAS- 61 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 +S AR SA+R + +L E R D+PS L P + LPK LS Sbjct: 62 ------------LAGSSVARKASALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILS 109 Query: 115 EAQVERLLQAPLIDQ--------PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 +V+RL LI + PL+LR A++E+LY +GLR +ELV L ++ + Sbjct: 110 TTEVDRLFA--LIAERLEVAHPAPLDLRLSALIELLYGSGLRATELVSLPRRALAADRPF 167 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 + + GKG +ERLVP+ + A + +L H + G S LFPS ++ ++R + Sbjct: 168 LILKGKGARERLVPISDRARAAVSAWLVH-----VPGDSA-WLFPSGKSH-LSRIRLYQL 220 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K A AGI E++SPHVLRHAFATHLL GADLR +Q +LGH+D+ TTQIYTHV + R Sbjct: 221 VKALAGAAGIAPERVSPHVLRHAFATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRR 280 Query: 287 LRQLHQQHHPRA 298 L +L Q HP A Sbjct: 281 LVELVNQRHPLA 292 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 176 bits (446), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 166/295 (56%), Gaps = 8/295 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A ++ +L L E+ ++ T +Y RDL+ + E GL L + ++ +A+ Sbjct: 25 AYLQGYLAWLLGERRYSKLTAESYARDLAHLFEL--STGLALNELKVSHIRRYIAQLHSS 82 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S ARLLSA R + YL R+ D+P L +PK + LP+ LS Q R++ P Sbjct: 83 GLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVDLP 142 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI--SLRQGVVRVIGKGNKERLVPLGE 183 D P +RDKAM E+ Y++GLR+ EL+ L I + G VRV GKG+K R+VPLG Sbjct: 143 -TDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLGG 201 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ L +L RP L N + LF R +++ + R+K + + GI S + P Sbjct: 202 CAISALHEWLAV-RPTLAN-IGERALFVGARGARISPRVVQLRMKQWGIKQGITSS-VHP 258 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FATH+L DLR VQ +LGH+ +STTQ+YTH+ + L +++ HPRA Sbjct: 259 HMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRA 313 >UniRef50_C6Y269 Integrase family protein n=5 Tax=Sphingobacteriales RepID=C6Y269_PEDHD Length = 294 Score = 176 bits (446), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 165/294 (56%), Gaps = 5/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALLAERLEGG 66 +E FL L EK + +T+ +Y+ DL +++ L L + ++ + +E Sbjct: 3 VEHFLTYLQHEKRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVALMEDE 62 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP- 125 S R LSA+R ++YL RE +P A + +PK+P+RLP + E +++ LL + Sbjct: 63 ISENSVGRKLSALRSFYKYLLRENVLSSNPMALVKAPKVPKRLPVFVDEGKLDLLLDSEE 122 Query: 126 LIDQPL-ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D LRDK ++E L+ TG+R++EL+ L +DI+ + +RV+GK +KER+VP+G+ Sbjct: 123 FFDGSFPSLRDKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIVPIGKT 182 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 Y+E + + +LF + + + + ++ Y +K SPH Sbjct: 183 LREQFRVYMELKTLQNFDNKTT-MLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKK-SPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VLRH++AT LLN GADL ++ LLGH+ L+ TQ+YTH + ERL+ +++Q HP+A Sbjct: 241 VLRHSYATSLLNRGADLNAIKELLGHASLAATQVYTHNSVERLKTIYKQAHPKA 294 >UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteriaceae RepID=XERC_BIFLI Length = 355 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 176/350 (50%), Gaps = 63/350 (18%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+ F+ L + L+ NTL AYR DL+ + RG+T L DDL++ +A +E Sbjct: 10 IDSFVSYLKSNRGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMA--VESR 67 Query: 67 YKATSS-ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL--- 122 A SS AR AVR F + Y DP+A L +P +P LP L+E+Q E+LL Sbjct: 68 DHARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLDVA 127 Query: 123 -------------------------------QAPLIDQP-----LELRDKA--------- 137 A +++ + RD A Sbjct: 128 EHAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRN 187 Query: 138 --MLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEH 195 +LE+LYATG+RV+ELV + ++DI ++V GKGNK+R+VP G A LET+LE Sbjct: 188 AAILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQ 247 Query: 196 GRPWL-------LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRH 248 GRP L + + + LF R ++ ++ + A AG+ +SPH LRH Sbjct: 248 GRPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGV--PDISPHALRH 305 Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + ATH+L+ GADLR VQ +LGHS L TTQ YTHV+ E+L+ + Q PRA Sbjct: 306 SAATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 170/313 (54%), Gaps = 28/313 (8%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGY 67 E++L+ + +E+ + +TL++Y DL++ + +L + A + ++A +A G Sbjct: 9 EEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIAHLFHEGM 68 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP-- 125 +++ R +S+++ +++ E+ E+ P+ +L PK LP L++ Q+ LL P Sbjct: 69 SSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHLLDDPFK 128 Query: 126 ----------------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRV 169 L Q RDKA+LE+LY GLRVSEL GL D+ + +VRV Sbjct: 129 PQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLVSDELVRV 188 Query: 170 IGKGNKERLVPLGEEAVYWLETYLEHGRPW----LLNGVSIDVLFPSQRAQQMTRQTFWH 225 GKG+KERLVP A LE+Y + W + + D +F S R +++RQ + Sbjct: 189 FGKGSKERLVPCLGTA---LESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQAVFS 245 Query: 226 RIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 285 ++ Y GI + L PH LRH++ATH+L G +LR+VQ LLGH+ +STTQ+YTH+ Sbjct: 246 LVERYGSYVGI--KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLT 303 Query: 286 RLRQLHQQHHPRA 298 +R + HPRA Sbjct: 304 HIRSEYMAAHPRA 316 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 158/277 (57%), Gaps = 4/277 (1%) Query: 24 NTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRR 81 NT+ YR+D++ ++++ + + +++ +A S R +SA+R Sbjct: 30 NTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAYSNNNEVGKRSINRKISALRT 89 Query: 82 LFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEV 141 F YL + E + ++ PK + LP L++ + +L I + +RD+ ++E Sbjct: 90 FFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRLIIEF 149 Query: 142 LYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLL 201 LY++GLR SELV L+ I+L + VRV+GKGNKER+ E A W E Y+ R Sbjct: 150 LYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFFSENARKWYEKYISAKRNEYK 209 Query: 202 NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADL 261 N + +++F + R +++T ++ I YA AGI+ E ++PHV RH+FAT LLN+ D+ Sbjct: 210 N-YTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKE-VTPHVFRHSFATTLLNNKVDI 267 Query: 262 RVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 R +Q LLGHS +STTQ+YTHV+ LR+++ + HP A Sbjct: 268 RYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLA 304 >UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W041_9ACTO Length = 302 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 11/302 (3%) Query: 4 DLARIEQFLDALWLE--KNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLA 60 +LA ++ F WLE + + +T AY D+ +E+ T S L++ L+ Sbjct: 5 NLALLKDF--TTWLEHFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLS 62 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 R+ G+ S AR +++R + ++ DPS L + K+ LP+ LS Q+ + Sbjct: 63 NRIRKGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQ 122 Query: 121 L----LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 L ++ +RD A E+LY+ G+RV+ELVGL ++ + +RVIGKGNKE Sbjct: 123 LFNHLVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKE 182 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 RLVP G A+ L ++ GRP L+N S LF R ++ ++ ++ V AG+ Sbjct: 183 RLVPFGTPALESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGV 242 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 LSPH LRH ATH+L GADLR VQ +LGH+ L+TTQ YTHV RL + +Q HP Sbjct: 243 --PVLSPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHP 300 Query: 297 RA 298 RA Sbjct: 301 RA 302 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 178/303 (58%), Gaps = 13/303 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLT-LATAQSDDLQALLAERLE 64 I++F + LE+NL+ +T Y DL+ +L +HR T L T ++ ++ Sbjct: 5 IKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVRAFL 64 Query: 65 GG-----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 G K + AR L+++R F+YL++++ + +P +++P+ + +P LS ++ Sbjct: 65 GALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVDEIF 124 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL P + LRD+A+LE+ Y++G+RVSEL G+ D+ QG++R+ GKG KER+V Sbjct: 125 VLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKKERIV 184 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDV----LFPSQRAQQMTRQTFWHRIKHYAVLAG 235 P+G+ A ++ Y+ +G ++ LF ++R +++ ++ + Y ++G Sbjct: 185 PIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVSMSG 244 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + +++SPH LRH+FATHL++ GADLR +Q LLGH LSTTQ YT V+ RL ++ + H Sbjct: 245 LQ-KQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRAH 303 Query: 296 PRA 298 P+A Sbjct: 304 PKA 306 >UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGY7_KYTSD Length = 336 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 119/331 (35%), Positives = 172/331 (51%), Gaps = 38/331 (11%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 L +E F D L LE+ + +T+ AY DL+ + E L G T DL++ A R Sbjct: 7 LREVEGFADHLLLERGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAARRA 66 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ++ AR ++ R F ++ + DPSA L SP++ +RLP L Q +L++ Sbjct: 67 AAGLARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQLVE 126 Query: 124 ------------------------------------APLIDQPLELRDKAMLEVLYATGL 147 A + +LRD+A+LE+LYATG+ Sbjct: 127 GGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYATGI 186 Query: 148 RVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID 207 RV ELV L +SL+ VRV GKG+KER+VP G A+ LE ++ GRP LL S + Sbjct: 187 RVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGARSGE 246 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 LF R ++ + R+ H A + + PH LRH+ ATH+++ GAD+R VQ L Sbjct: 247 ALFLGVRGGRIDPREV-RRVVHRAAQRVEGAADIGPHGLRHSAATHMVDAGADIRSVQEL 305 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGH+ L+TTQ+YTHV+ ERLR+ + HPRA Sbjct: 306 LGHASLATTQVYTHVSVERLREAFDRSHPRA 336 >UniRef50_Q9PL53 Tyrosine recombinase xerD n=15 Tax=Chlamydiaceae RepID=XERD_CHLMU Length = 301 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/297 (37%), Positives = 169/297 (56%), Gaps = 15/297 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IEQF L +++ +A ++ AY +D+ + ++ + + +S L E+ Sbjct: 12 IEQFTIFLSVDRGIAPLSVQAYCQDILLFLQRVPIETTDMINQES---VFLFVEKCHQAK 68 Query: 68 KA-TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ T+ AR L A++ F +L K P + PK+ +RLP LS +V LL PL Sbjct: 69 ESETTLARRLIALKVFFHFLKDAKLIHQQP--FIEHPKVWKRLPSILSTEEVNSLLNQPL 126 Query: 127 ----IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +D + RD A+L YATG+RVSEL L + DIS +RV GKG K RLVP+ Sbjct: 127 NTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDIS--DDFIRVTGKGRKTRLVPIS 184 Query: 183 EEAVYWLETYLEHGRP-WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 +A +++YL R + S + +F S R +++ R W RI YA L + ++ + Sbjct: 185 IKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKL--VTTKHI 242 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRHAFATHLLN+ ADLR++Q +LGH+ +S+T+IYTHVA+E + + HHPR+ Sbjct: 243 SPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVASESIIEKFHTHHPRS 299 >UniRef50_C7LZA8 Integrase family protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZA8_ACIFD Length = 299 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/297 (38%), Positives = 168/297 (56%), Gaps = 13/297 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A ++++L L + + +E T AYR DL + WL RG L A ALL ++ Sbjct: 7 AVVDEYLTLLVVAADRSELTAIAYRSDLEAVATWLEARGSRLLDASP----ALLRSWVDA 62 Query: 66 GYKATSS---ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + S R SA+R LF+Y R R DDP + +P LP+ L+ +VERL+ Sbjct: 63 AGRERSPRGVQRAASALRGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLI 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV-VRVIGKGNKERLVPL 181 ++ RD+A+LEVLY +G+RVSEL G T+ I+ QG V V+GK +ERLVP+ Sbjct: 123 ESVGTADVAGARDRAILEVLYGSGVRVSELCGFTLDTIA--QGRWVPVVGKRGRERLVPI 180 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A LE ++ RP L +LF + R +TRQ W +K A G+ +++ Sbjct: 181 SAPARDALEQWVVRWRPQLAP--KHRMLFVNLRGAPITRQGVWLVLKQRASRVGL-GDRV 237 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPHVLRH+ A H++ GADLRVVQ +LGH+ L+TT++YT V+ + ++Q+ HPRA Sbjct: 238 SPHVLRHSLAVHMVEAGADLRVVQEILGHASLATTELYTKVSEGHVDAVYQRAHPRA 294 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 113/319 (35%), Positives = 173/319 (54%), Gaps = 30/319 (9%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATA------QSDDLQALLA 60 +E FL L +N++ T+ AYR DL +L + GL A + D++ + Sbjct: 20 LEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMG 79 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 L+ G + S AR L++V+ +++L P + + +P+L +++P+ +SE + + Sbjct: 80 HLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQ 139 Query: 121 LLQ--------APL--------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQ 164 L + A L + Q RD+A+LEVLY GLR+SEL+ L +D+ L Sbjct: 140 LFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVH 199 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGR-----PWLLNGVSIDVLFPSQRAQQMT 219 G ++V GKG K+R+VPLGE AV L Y E R P G S V F + R +Q+ Sbjct: 200 GFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRV-FVTSRGRQLY 258 Query: 220 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 K Y +SEK +PH+LRH+FATH+LN GADL+ V +LGHS L+TT++Y Sbjct: 259 PMLVQRMTKRYLTPVS-ESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELY 317 Query: 280 THVATERLRQLHQQHHPRA 298 THV RL++++ + HP A Sbjct: 318 THVTFSRLKEIYDKAHPGA 336 >UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2S2Y8_TREPS Length = 306 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 88/254 (34%), Positives = 146/254 (57%), Gaps = 9/254 (3%) Query: 45 LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK 104 + +A + D + +R G + A+ ++A+ +Q+L E+ R D+P + +P+ Sbjct: 44 CNIESANAHDCVRFIEKRSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVDAPR 103 Query: 105 LPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQ 164 LP+ LS QV LQ+ + P +RD+A+ E++YA GLRVSE V L++SDI + Sbjct: 104 RAYSLPRVLSPEQVNTFLQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDIFFAE 163 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLL------NGVSIDVLFPSQRAQQM 218 +++V GKGNKER+ P GE+A Y+L Y+ R N +F +++ ++ Sbjct: 164 RLLKVTGKGNKERMAPFGEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRL 223 Query: 219 TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQI 278 +R+ W R++ + +G+++ H RH++ATHLL G DL VQ LLGH+D++TTQ+ Sbjct: 224 SRKGIWKRLQDIEIRSGVETHV---HTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQV 280 Query: 279 YTHVATERLRQLHQ 292 YTHV +L H+ Sbjct: 281 YTHVENGQLEACHR 294 >UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB85_BRAFD Length = 332 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 173/325 (53%), Gaps = 31/325 (9%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAER 62 D A ++ F D L LE+ +E+T+ AYRR+ + ++ L +TL L++ L+ R Sbjct: 9 DDAVLDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSAR 68 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP------------ 110 E G A++ AR ++VR +L D L +P+ + LP Sbjct: 69 AETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELL 128 Query: 111 -------KDLSEAQVERLLQAPLI-----DQPLELRDKAMLEVLYATGLRVSELVGLTMS 158 +D S A + AP D+ + LRD A+LE+LY++GLRVSELV L S Sbjct: 129 DGLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRS 188 Query: 159 DISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSI-----DVLFPSQ 213 I + G VRV GKG++ER+VP+G A+ L+ + GRP LL + D LF Sbjct: 189 RIDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGV 248 Query: 214 RAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDL 273 R ++ + + + AGI S ++PH LRH+ ATHL+ GADLR VQ LGHS L Sbjct: 249 RGGRLGDRAVRTLVDRHVAEAGI-SRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSL 307 Query: 274 STTQIYTHVATERLRQLHQQHHPRA 298 +TTQIYTHV+ ERLR+ Q HPRA Sbjct: 308 ATTQIYTHVSAERLRRTVDQAHPRA 332 >UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GL18_9FUSO Length = 315 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 168/288 (58%), Gaps = 14/288 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I++F D L EK ++NT+ Y RDL + +++ + + ++ L Sbjct: 34 IKEFSDYLSFEKGSSKNTVAGYERDLKIFFDYIQKSATDIKEEDIYEYIEEISREL---- 89 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K S R ++++R +++ Y K ++DP+ + S K +RLP+ L+ +V+ ++ + Sbjct: 90 KRNSVLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTIIDN-IG 148 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG--VVRVIGKGNKERLVPLGEEA 185 P +RD+ +++ L ATG RVSE++ L + D+ QG ++V+GKG+K R+VP+ E Sbjct: 149 HTPEGMRDRLIIKFLIATGARVSEILNLNIKDVE-NQGYEFIKVLGKGSKYRIVPIYESL 207 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 ++ Y+ + RP L S LFP R R+ FW R+K A AGI+ + + PH+ Sbjct: 208 ENEIKDYISNYRPKLKGSESSFKLFPDTR-----RENFWKRLKKTAKDAGIE-KNVYPHI 261 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 RH+ AT LL++GAD+R+VQ +LGH+++STT+IYTHV L++++ + Sbjct: 262 FRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNK 309 >UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax=Bifidobacteriaceae RepID=D2RA91_GARVA Length = 322 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 166/307 (54%), Gaps = 16/307 (5%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 ++ I+ ++D + K L E T AY D+ + W + G ++ +DDL++ +A+ Sbjct: 19 MSLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADES 78 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + +S AR + AVR F + ++ +P+ L + K+ LP L E Q E L+ Sbjct: 79 RS-HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMN 137 Query: 124 -----------APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 P + + LR+ A+LE+LYATG+RV EL L + DI+ ++V GK Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197 Query: 173 GNKERLVPLGEEAVYWLETYL-EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231 GNK+R+VP G A L ++ + GR LL + +F R +++ ++ + A Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 A + +SPH LRH+ ATH+LN GADLR VQ LLGHS L+TTQ YTHV+ E L++ + Sbjct: 258 KSAHV--PDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKY 315 Query: 292 QQHHPRA 298 Q PRA Sbjct: 316 SQAFPRA 322 >UniRef50_A3HVT2 Putative site-specific recombinase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVT2_9SPHI Length = 294 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 167/299 (55%), Gaps = 14/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD-------DLQALLA 60 I+ F++ L EK + +T+ AYR+DL +E++ +++ + D +++A + Sbjct: 2 IDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFV-----SVSFGEEDILFVGHSEIRAWVI 56 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + +E T+ R ++ +R +++L R + DP+ L S K P++LP+ L E + Sbjct: 57 DLVENQLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQELTISS 116 Query: 121 LLQAPLIDQPLE-LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L+ + ++ E RDK +LE LY TG+R+SEL GL DI+L + VV+V+GK KER++ Sbjct: 117 VLEESVYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKERII 176 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PL + +Y + D S + + ++ Y + + Sbjct: 177 PLTNGLARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFA-QTS 235 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 K SPHVLRH FATHLLN GADL V+ LLGHS+L+ TQ+YTH + E+L+ + +Q HP+A Sbjct: 236 KRSPHVLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAVFEQAHPKA 294 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 108/301 (35%), Positives = 170/301 (56%), Gaps = 8/301 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT----LATAQSDDLQA 57 KQ ++ E+F++ + ++ + T ++Y RDL +L + +T + A D Sbjct: 13 KQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVT 72 Query: 58 LL--AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 LL + +S +R+LS +R + YL R K + +P+ L +PKL + +P+ L+ Sbjct: 73 LLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTF 132 Query: 116 AQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 Q+ L + ++ P LR++A+LE +YA GLRVSE+ LT++++ L + ++ V GKG+K Sbjct: 133 DQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDK 192 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R+VP + L YL R L +F SQR +T + + AG Sbjct: 193 QRIVPFYKRLRTLLTRYLRDSRALYLKE-EHGFVFVSQRGAPITPRAVQLILAQAGQDAG 251 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 ++ + L PH+LRH+FATHLL++G DLR VQ LLGHS LSTTQIYTHV +RL+Q H Sbjct: 252 LN-QPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAH 310 Query: 296 P 296 P Sbjct: 311 P 311 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 158/287 (55%), Gaps = 13/287 (4%) Query: 15 LWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL-----EGGYKA 69 + LEK L+ENT+ +Y RDL ++ L ++A + ER + G + Sbjct: 19 IKLEKRLSENTVESYMRDLRQFAHFI----LRFYDVPPRKVEAPMIERYLALLYDQGREK 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 TS AR LS +R + YL + P+ + +PK + LP L+ +++R++ A Sbjct: 75 TSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTST 134 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 RD AMLEVLY+ GLRVSEL L + D+ +G +RV GKG+K+RLVP+ A + Sbjct: 135 VKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAAREKI 194 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 + YL+ + DV+F + R Q+TR + ++ AGID + +SPH RH+ Sbjct: 195 QRYLDD---RATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGID-KHISPHTFRHS 250 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 FATHLL GA +R VQ +LGH + TT+IYTH+ + LR +++ P Sbjct: 251 FATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 105/289 (36%), Positives = 167/289 (57%), Gaps = 13/289 (4%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 FLD L + L+ T+ AYR DL ++ L H ++ + ++A L + G + Sbjct: 28 FLDELTYSRRLSGATVRAYRADLMPLLAGLDH----ISELSTPVIRAHLGAKHAEGAARS 83 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-APLIDQ 129 S ARL +++R+ +L + + DPS L++PK Q LP+ LS +VE ++ D Sbjct: 84 SLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSSEDS 143 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 + RD A++E+LYATG+RV EL +SD++ + ++ V+GKG+K+R+VP G A L Sbjct: 144 AVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAPAEAAL 203 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 + +L+ + + + LF R ++ + I +A +SPH LRH+ Sbjct: 204 KGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA--------DVSPHALRHS 255 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 AT ++ GADLRVVQ +LGHS L+TTQIYTHV+ +RLR++H++ HPRA Sbjct: 256 AATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 172 bits (437), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 121/314 (38%), Positives = 165/314 (52%), Gaps = 32/314 (10%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD-----------DLQ 56 + FLD L E+ + T+ YR+ WL GL A +S DL+ Sbjct: 25 LTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRDLR 84 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + E + + + +S +R ++Y R +P LA PKL +RLPK L+E Sbjct: 85 DFVIEG-QRRFDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLTEQ 143 Query: 117 QVERLLQAP--LIDQPLEL------RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVR 168 Q++ LL P L+D ++ RD+ +E+LY GLRVSEL L I GV R Sbjct: 144 QMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSELTALDYGQIDFTSGVAR 203 Query: 169 VIGKGNKERLVPLGEEA----VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFW 224 V+GKG KERL PLG+ A V W Y P + VL + + RQ Sbjct: 204 VLGKGRKERLCPLGKVALAVLVKWKNEYARDTSP------AAPVLVTPEHERMPVRQVQL 257 Query: 225 HRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284 +K Y LAG+ ++ LSPH LRH++ATHLLN GADLR+VQ LLGH+ L+TTQIYTHV+ Sbjct: 258 M-LKRYLALAGLPTD-LSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSI 315 Query: 285 ERLRQLHQQHHPRA 298 RLR ++ + HPRA Sbjct: 316 ARLRDIYDKAHPRA 329 >UniRef50_C6XMJ6 Integrase family protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XMJ6_HIRBI Length = 318 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 177/302 (58%), Gaps = 23/302 (7%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWL-HHRG-----LTLATAQSDDLQALLA-ERL 63 F++ L E+ ++E+T++ YRRD+ + +L +H G L D++A LA R Sbjct: 26 FVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTPSDVRAWLAFRRA 85 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHL---ASPKLPQRLPKDLSEAQVER 120 +ATS +R LSAVR F+YL R+ D P+A + +PK PQRLP+ +S+ + Sbjct: 86 NDDLQATSISRALSAVRAFFKYLDRQL---DKPNARIQMVKAPKRPQRLPRPVSQEIAKN 142 Query: 121 LLQAPLIDQPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 LL+ + +Q +E RD AM+ ++Y GLR+SE + LT +D+ R ++R+ GKGNK Sbjct: 143 LLKE-VENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADVPARD-ILRIQGKGNKV 200 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 RLVPL L Y E RP+L + LF + +++ + I+ + G+ Sbjct: 201 RLVPLIPAVRDALNVYYEK-RPFLSDEEG--PLFRGVKGKKLNPRIIQKLIEKLRISMGL 257 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + +PH LRH+FATHLL +GADLR +Q LLGH+ LS+TQIYT V +RL+ +H+ HP Sbjct: 258 -PDTATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLKAIHKAAHP 316 Query: 297 RA 298 RA Sbjct: 317 RA 318 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 165/295 (55%), Gaps = 16/295 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 I+ F + L L + T+ YR DL M + + +L T L+ L ++ G Sbjct: 26 IDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIEDIDNFSLPT-----LRQWLGIAVDEG 80 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-AP 125 + AR ++V+ + + + D +A L SPK+ + LPK L E Q ++ A Sbjct: 81 KSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVENAA 140 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 ++ LRD A+LE+LYATG+RV+EL G+ +SDI + +VRV+GKGNKER+VP GE A Sbjct: 141 STNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERVVPFGESA 200 Query: 186 VYWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 L +L+ + + ++ D LF R Q++ + + A + G+D LSP Sbjct: 201 HKALRNWLD-----VRDEMTEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD--HLSP 253 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH ATHLL+ GADLR VQ LLGHS + TTQIYTHV+ +RL + + HPRA Sbjct: 254 HSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_A4ECJ8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECJ8_9ACTN Length = 220 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/217 (45%), Positives = 127/217 (58%), Gaps = 8/217 (3%) Query: 89 EKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLR 148 E E D + +ASPKLP+ LP L+ QVE LL+ P P LRD AMLE+LYA+G R Sbjct: 4 EGIVEGDAVSAIASPKLPRDLPGVLTTQQVEALLKTPDTSTPAGLRDAAMLELLYASGAR 63 Query: 149 VSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLN------ 202 +SEL L + I + +R+ GKG+KER+VPL A+ Y+E GRP LL Sbjct: 64 ISELAALNVESIGWSERTLRLWGKGSKERIVPLYRRALEATRLYIEEGRPELLAQAKRRD 123 Query: 203 -GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADL 261 L S R +M+ R A LAGI ++ ++PH +RH FAT LL GADL Sbjct: 124 PATGPHPLLISARGNRMSAAMLRRRFHTLATLAGIPAD-IAPHAMRHTFATDLLEGGADL 182 Query: 262 RVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 R VQ LLGH+ LSTTQIYTH+ +RL++ Q HPR Sbjct: 183 RSVQELLGHASLSTTQIYTHLTPDRLKRAVAQAHPRG 219 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/297 (38%), Positives = 173/297 (58%), Gaps = 9/297 (3%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 L +++ +LD L + + +T AYRRDL + L A + ++A + R Sbjct: 6 LEQLDDYLDRL--ARRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYVGTRH 63 Query: 64 -EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A S RLL+A+R F L +++ + +P+ + P+ +RLP+ L V LL Sbjct: 64 HRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVAGLL 123 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRV-IGKGNKERLVPL 181 AP D+ LE RD+AM E+ Y++GLR+SELVGL + D+ G V V GKG K R VP+ Sbjct: 124 DAPADDR-LETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARYVPV 182 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G +A+ + +LE R +L G LF S++ +++ +T R++ + G+ SE++ Sbjct: 183 GAKALEAIGAWLEARR--VLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGL-SERV 239 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH+LRH+FA+H+L DLR VQ LLGH+ L+TTQIYTHV +RL ++ Q HPRA Sbjct: 240 HPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRA 296 >UniRef50_B9L0I5 Tyrosine recombinase xerD n=2 Tax=Thermomicrobia (class) RepID=B9L0I5_THERP Length = 331 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/275 (38%), Positives = 155/275 (56%), Gaps = 5/275 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GL-TLATAQSDDLQALLAERLEG 65 IE+FL + E+ L+ NT+ AYR DL ++ R GL + S+ L+A L + Sbjct: 22 IEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEHLEAFLGYLRDR 81 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y T++AR L+A++ YL R +P+ L P++ + P+ + +VE+L+ A Sbjct: 82 QYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGPKEVEQLIAAA 141 Query: 126 LIDQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D+ P LRD+AML L TGLRVSEL L + D+ L +G + V +ER+VPL E Sbjct: 142 SSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPNGRERVVPLARE 201 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L YLE GRP LF + R ++TRQ FW +K+YA AG+ +++PH Sbjct: 202 AIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAAAGL--PEVTPH 259 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 LRH+FA L G DLR +Q +LGH +TTQ+Y Sbjct: 260 TLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVY 294 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 172/300 (57%), Gaps = 13/300 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD-----DLQALLAER 62 +E+FL + + +E+T AY+RD+ + ++ + + + D + A L ++ Sbjct: 5 LERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAID-SFEDVDRIVVMNYIAFLRDK 63 Query: 63 LEGGY---KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 GY K T+ AR LS++R + YL ++P + +PK+ +R+P+ L ++E Sbjct: 64 GGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDEIE 123 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 L++ ++ LRD+ M E++YA GLRVSE V L D+ ++ + GKG+KERLV Sbjct: 124 IFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKERLV 183 Query: 180 PLGEEAVYWLETYLEHGRP-WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P + A L +Y++ R W + + LF +QR +++T + + + + AV Sbjct: 184 PFYDLAKELLVSYIKDVRDVWATSDET--ALFVNQRGKKLTTRGVQY-LMNKAVEKCDLH 240 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+ RH+FATHLL++GADLR VQ LLGHS LSTTQIY HV+ ERL+ ++ HPRA Sbjct: 241 VHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRA 300 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 163/291 (56%), Gaps = 20/291 (6%) Query: 22 AENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD---LQALLA--------ERLEGGYKAT 70 AE T+ +Y DL V+++ + + ++ D +Q L E+ + +K Sbjct: 21 AEATIASYTNDLRQYVQYM--QTCKIEEVENIDYSHVQDFLEYLRQDHYDEKGQCIHKKK 78 Query: 71 SSA---RLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 SSA +++++ +YL + +P ++ + K Q LP + +ERLL + Sbjct: 79 SSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPVYFNMQDIERLLDS-FR 137 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D E+ DKA++E+LY GLRVSE L + + L QG +RVIGKGNKER+VP+ Sbjct: 138 DSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGKGNKERMVPMHARCKK 197 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 LE YL R + +F + + Q++TRQ IK + G+D E+LS H R Sbjct: 198 ALENYLTKVRKQ--RYARSNFVFINAKGQEITRQYIHVMIKKRLLALGLD-ERLSAHSFR 254 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FA+HLL+ GADLRVVQ LLGHSD+STTQIYTHV +RL+ ++ HPRA Sbjct: 255 HSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHPRA 305 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/230 (43%), Positives = 138/230 (60%), Gaps = 11/230 (4%) Query: 76 LSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP-------LID 128 +S +R F++ R + +P + PKL +RLPK L+E Q+ RLL P ID Sbjct: 99 VSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGPQQLLASESID 158 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 RD+ +LE+LY GLRVSEL GL I L GV R++GKG KERL P+G AV Sbjct: 159 AFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERLCPIGRVAVAV 218 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRH 248 L + + P + V +QR +M+ + +K Y LA + + L+PH LRH Sbjct: 219 LRKFRDEFAPATAPDAPVIV---TQRGTRMSPREVQLMLKRYLALAELPMD-LTPHKLRH 274 Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++ATHLLN GADLR+VQ LLGH+ L+TTQ+YTHV+ RL++++ + HPRA Sbjct: 275 SYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 168/304 (55%), Gaps = 21/304 (6%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL----- 63 E++ + L L + ++ +T++AY DL ++E+L A A + L+ L +R Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLS----LDADATPEQLREALTQRAVRSWL 62 Query: 64 -----EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 +GG ++T AR +A+R + RE DP+A L+SP+ Q LP L E+ Sbjct: 63 ARTLADGGARSTI-ARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDA 121 Query: 119 ERLLQAPLIDQPL----ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 LL + ++R+ A+LE+ YA GLRVSE+ L +S ++ VRV+GKGN Sbjct: 122 RVLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGN 181 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 KER+VP G A L+ +L GRP L S + LF + ++ + + A A Sbjct: 182 KERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARA 241 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 G+ ++PH LRH+ ATHLL GADLR VQ +LGHS LSTTQ YTHV T RL ++Q+ Sbjct: 242 GV--HDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRA 299 Query: 295 HPRA 298 HPRA Sbjct: 300 HPRA 303 >UniRef50_C0W1H5 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1H5_9ACTO Length = 317 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 128/306 (41%), Positives = 176/306 (57%), Gaps = 19/306 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT---LATAQSDDLQALLAERLE 64 + FLD L +EK + +T+ YRRDL +L RG+ LA + + A L + Sbjct: 14 LNGFLDYLTVEKGASAHTVAGYRRDLE---RFLVERGIADTPLAQVDTVAIDAHLTQLSL 70 Query: 65 G-----GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 G G A S AR +++R LF+Y E DP+A + KL + LPK +S ++ Sbjct: 71 GFAGKPGLSAASIARARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEIA 130 Query: 120 RLLQ-APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV--VRVIGKGNKE 176 +L+ A P+ LRD A++E+LY TG R++E++ L+ D+ L V++ GKG KE Sbjct: 131 AMLEVAGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLFGKGRKE 190 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV----LFPSQRAQQMTRQTFWHRIKHYAV 232 RLVPLG AV LE YL GRP LL V LF ++R ++RQ+ W I AV Sbjct: 191 RLVPLGSFAVQALEDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEIISQTAV 250 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG SE +SPH LRH+FATHLL GA +R VQ LLGH+ ++TTQIYT V+ LR++H Sbjct: 251 AAGCVSE-VSPHSLRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNTLREVHA 309 Query: 293 QHHPRA 298 HPRA Sbjct: 310 LTHPRA 315 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 170/308 (55%), Gaps = 17/308 (5%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD--DLQAL 58 M Q + ++++ + L E+ + TL AYR D+ V + G + D D++ Sbjct: 1 MNQITSTMKKYEEYLQAERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIY 60 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E TS AR +S++R + +L + +P A++ ++LP+ L A+V Sbjct: 61 LNNLYERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEV 120 Query: 119 ERLLQA---PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 L+A P DQ LR+ A++E+LYATG+R+ E+ LT S I +V + GKG K Sbjct: 121 IEYLRAAADPQNDQ--YLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKK 178 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSI-----DVLFPSQRAQQMTRQTFWHRIKHY 230 +R++P G+ A+ L+ YL PW + +F + R +Q+T + +K Sbjct: 179 QRIIPFGKPALASLKQYL----PWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQV 234 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 + + + + + PH+LRH+FATHLLN+GAD+R VQ LLGH+ LSTTQIYTH+ TE L++ Sbjct: 235 SKRSKL-TANIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQEN 293 Query: 291 HQQHHPRA 298 +++ RA Sbjct: 294 YKKFFDRA 301 >UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID=B2GFZ3_KOCRD Length = 378 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 167/302 (55%), Gaps = 13/302 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA-QSDDLQALLAERLEGG 66 + +F L LE++ +ENT+ +Y D++ + W+ G+ A D L+ LA+R + G Sbjct: 79 LPEFRAHLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQRG 138 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA-- 124 +S +R ++AV F++ + DP+A L P+ + LP + + +L A Sbjct: 139 LARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDALG 198 Query: 125 --------PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 D L RD A+LE+LYATG R+SELVGL + + Q V+ + GKG+K+ Sbjct: 199 DVALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDKQ 258 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R VP GE A L + EH RP L + D +F R ++ + R+ A+ Sbjct: 259 RRVPYGERAGDALAVW-EHRRPALATERAGDAVFVGARGGRIDPRVA-RRVVADALNDVP 316 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 D+ PH LRH+ ATHLL+ GADLR VQ LLGH+ ++TTQIYTHV+ ER+++ + Q HP Sbjct: 317 DTSARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAHP 376 Query: 297 RA 298 RA Sbjct: 377 RA 378 >UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella RepID=C5VK74_9BACT Length = 294 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 167/295 (56%), Gaps = 8/295 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 +E+FLD + E+N + T+ YR+DL+ + L+ + SD ++ + ++ Sbjct: 4 VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A+S R LSA+R +++ R K E DP L PK + LP+ L E+++ERLL + Sbjct: 64 GNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDSK 123 Query: 126 L-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + D ++ ++ ++ Y TG+R+SEL+GL DI ++V GK NK+R+VP G+E Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGKE 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS-EKLSP 243 Y E R + G S F +++ ++MT +K L+ + + +K SP Sbjct: 184 LADVFAQYQE-VRNATVKGDS-KAFFQTEKGKRMTTAQVRTLVKKN--LSKVSTLKKRSP 239 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HVLRH FAT +LNH A L V+ LLGH LSTT+IYTH E+L+++++ HPRA Sbjct: 240 HVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >UniRef50_A4X4I7 Phage integrase family protein n=8 Tax=Actinomycetales RepID=A4X4I7_SALTO Length = 325 Score = 170 bits (431), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 117/305 (38%), Positives = 166/305 (54%), Gaps = 17/305 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRD-LSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + F + L +N + +T+ AY D +S++ + T A +++ LA + G Sbjct: 23 DDFANHLAQVQNRSTHTVRAYVADVISLLDHAVRAGARTPADLTLAQIRSWLARQRTTGA 82 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK----LPQRLPKDLSEAQVERLLQ 123 ++ AR +A R + +R+ D +A LASP+ LP LP D + A +E Sbjct: 83 ARSTLARRSAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLETAHA 142 Query: 124 APL----------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 AP P+ LRD+ +LE+LYATG+RVSE GL ++D+ + V+RV GKG Sbjct: 143 APRGQPTDDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVFGKG 202 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 +ER VP G A L+ +L HGRP L+ S + L R ++ T + Y Sbjct: 203 GRERSVPYGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRYTTA 262 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG+ + SPH LRH ATHLL GADLR VQ LLGHS L++TQIYTHV+ ERLR ++Q Sbjct: 263 AGL--PRTSPHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAYRQ 320 Query: 294 HHPRA 298 HPRA Sbjct: 321 AHPRA 325 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 170 bits (431), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/295 (36%), Positives = 161/295 (54%), Gaps = 13/295 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQALLAERLEG 65 +I +F+ L +E+ A NT AY RDL ++ + + + A+ S++L + Sbjct: 4 QINRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMRHQ 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-- 123 + R LS++R YL + E + + L SPK+ + LPK L ERL+Q Sbjct: 64 NISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLD---YERLVQML 120 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P ELRD AM+EVLY+ GLRVSELVGL + D+ QG +RV+GKG+K R PLGE Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A + YL+ + LF + R ++++ +T + IK+ A+ GI + P Sbjct: 181 SAQKSINRYLQK------TSHTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVN-VHP 233 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRHA ATH L DLR VQ LGH + +TQ+YTH+ L +++ + HPRA Sbjct: 234 HMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRA 288 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 117/303 (38%), Positives = 168/303 (55%), Gaps = 15/303 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD---LQALLAER 62 A E FL L L K + T +AYRRD+S +L GLTL + + +Q A Sbjct: 5 AVTETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASL 64 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 TS AR L+A+R LF+YL + +D+P+ + +PK + P+ L+ QV LL Sbjct: 65 YYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLL 124 Query: 123 QAP-----LIDQPLEL----RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 + LEL R+ A+LE+LY +GLR+SE + L +SDI G VRVIGKG Sbjct: 125 KGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKG 184 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 NKERL PL + ++ LE +L ++ + LF R +++ R+ ++ + Sbjct: 185 NKERLAPLSDTSIVALEEWL--AIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQ 242 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG+ +PH LRH+FATHLL GA+LR VQ LLGH+ LSTTQ YTH+ ++L Q + + Sbjct: 243 AGLPLTT-APHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDK 301 Query: 294 HHP 296 HP Sbjct: 302 AHP 304 >UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychrobacter RepID=Q1QE98_PSYCK Length = 349 Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 170/301 (56%), Gaps = 12/301 (3%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL- 63 LA + ++L+ L + +N + +TL AY L+ + +L + LT L +++RL Sbjct: 43 LAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKRLTWTRCDKRQLAQHISQRLD 101 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 E S + LSA+R + +L E +P+ + P+ LP + +LL Sbjct: 102 EDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLTQLLD 161 Query: 124 APLIDQP----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + D P L LRDKAM E+LY++GLRV ELV L + D+ L VRV GKGNK RLV Sbjct: 162 QEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNKTRLV 221 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSID-VLFPSQR-AQQMTRQTFWHRIKHYAVLAGID 237 PLG +A + YL H W+ +D LF S++ +++ + R+K A AGI Sbjct: 222 PLGIKAADAIRRYLPHRNLWVEQ---MDQALFISEKLGTRLSTRAVQQRLKVAATRAGI- 277 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 ++ + PH+LRH FA+H+L+ DLR VQ +LGHSD+STTQIYTHV +L Q++ + HPR Sbjct: 278 AQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPR 337 Query: 298 A 298 A Sbjct: 338 A 338 >UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S5H6_PROA2 Length = 335 Score = 170 bits (430), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 104/317 (32%), Positives = 177/317 (55%), Gaps = 27/317 (8%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-------GLTLATAQSDDLQALLA 60 ++ FLD + LE++ + +T AYR D+ ++ ++ + A+ D++ + Sbjct: 20 LKGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMG 79 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E LE G + S AR L+AV+ + YL + + + +P+ + +P LSE + E+ Sbjct: 80 ELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEK 139 Query: 121 LLQAPL-IDQPLEL--------------RDKAMLEVLYATGLRVSELVGLTMSDISLRQG 165 L L + P E RD+A+LEVLY GLR+SE++GL +++L+ Sbjct: 140 LFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDS 199 Query: 166 VVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPW--LLNGVSIDV--LFPSQRAQQMTRQ 221 ++RV GKG K+R+VPLG A L Y E R + + N S D +F +++ +++ Sbjct: 200 LLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIY-P 258 Query: 222 TFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 281 R+ + A + + +PHVLRH+FATH+LN GADL+ V +LGH++L+TT+IYTH Sbjct: 259 VLVQRVTRKYLSAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTH 318 Query: 282 VATERLRQLHQQHHPRA 298 V R+++++ + HP+A Sbjct: 319 VTFGRIKEVYLKAHPKA 335 >UniRef50_Q83N36 Integrase/recombinase n=2 Tax=Tropheryma whipplei RepID=Q83N36_TROWT Length = 349 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 115/326 (35%), Positives = 172/326 (52%), Gaps = 40/326 (12%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGYKA 69 F LE L++ TL YR L + + WL +G L+ S+ ++ L R K+ Sbjct: 25 FFPFAKLELGLSDATLQTYRNSLGIYLSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKS 84 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 T A ++A+R ++L E + +P+ L PK+P+ LP LS ++ LL+A +Q Sbjct: 85 TL-ANTVAALRTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAADTNQ 143 Query: 130 PLE--LRDKAMLEVLYATGLRVSELVGLTMSDISLR-QGVVRVIGKGNKERLVPLGEEAV 186 E LRD+A++EVLY TG R+SE V L ++ + Q ++R+ GKGNK+R+V G A Sbjct: 144 AREISLRDRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYAR 203 Query: 187 YWLETYLEHGRPWLL----------------------------NGV------SIDVLFPS 212 ++ YL+H RP LL +GV + LF S Sbjct: 204 NAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLS 263 Query: 213 QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSD 272 R +++TRQ + I+ A I +SPH LRH+FATH+L GAD+R VQ LLGHS Sbjct: 264 NRGKRLTRQQAGNIIRKLGEAAEI-GRYISPHSLRHSFATHMLQAGADIRTVQELLGHSS 322 Query: 273 LSTTQIYTHVATERLRQLHQQHHPRA 298 ++TT +YT V + LR+++ HPRA Sbjct: 323 INTTSVYTKVTIDSLREVYATSHPRA 348 >UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepID=XERC_CHLT2 Length = 315 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 168/309 (54%), Gaps = 29/309 (9%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------------------LTLATAQ 51 FLD L K + +TL Y DLS + +L + L+ + Sbjct: 8 FLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPPLSFSLFT 67 Query: 52 SDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPK 111 D+++ L E+++ + + R LSA++ ++ + + ++P+ + P+LPQ LP Sbjct: 68 KDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPS 127 Query: 112 DLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 L+ QV L+ AP +D+ RD+ +LE+ Y++GLR+SE+ L +DI + ++ + G Sbjct: 128 PLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIRG 187 Query: 172 KGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID----VLFPSQRAQQMTRQTFWHRI 227 KG KER+VP+ + AV WL+ YL H + S++ F ++ ++++ ++ + Sbjct: 188 KGKKERIVPMTKVAVQWLQDYLNHP-----DRASVEQDHQACFLNRFGKRLSTRSIDRKF 242 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 + Y + G+ S ++PH +RH ATH L G DL+ +Q+LLGH+ L TT IYTHV+ + Sbjct: 243 QQYLLKTGL-SGSITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLK 301 Query: 288 RQLHQQHHP 296 +Q+H + HP Sbjct: 302 KQIHDETHP 310 >UniRef50_A5VJJ3 Tyrosine recombinase XerD subunit n=8 Tax=Lactobacillus RepID=A5VJJ3_LACRD Length = 297 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 173/296 (58%), Gaps = 8/296 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD--LQALLAERLEG 65 + FL L E+ L++NTL +Y+RDL V +L RG+ + Q D L LL + Sbjct: 5 VAAFLAFLKDERQLSDNTLMSYQRDLEQTVTYLEDRGI-VDWQQVDHYLLIDLLNSLRQQ 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSA---HLASPKLPQRLPKDLSEAQVERLL 122 G ++ R++S++R+ ++Y+ R +P H + P P L+E ++E+LL Sbjct: 64 GKANSTINRVISSLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPA-PVILTEKEIEQLL 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P + P+ LRD+A+LE++ ATG+RVSE++ L ++ + L ++++ GK +ER++PL Sbjct: 123 AVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLS 182 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + AV WL YL+ GRP LL +F + +TRQ W ++K + A I E ++ Sbjct: 183 QPAVKWLTDYLDRGRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKE-VT 241 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 P +R++FA HL+ +GAD++++Q +LG++ + Q Y V+ ++L + ++HPRA Sbjct: 242 PQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPRA 297 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 168/299 (56%), Gaps = 17/299 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDL-----QALLAER 62 + QFL +L EKN + +T+ AY DL +L A+ DD+ + L+ Sbjct: 10 VAQFLRSLK-EKNSSVHTIKAYTTDLEEFSAFL-------GPAKWDDIDHVRIRGFLSHL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G S AR L+A+R L+++L RE F E +P+A +A+PKLP++LP+ + ++ ++ Sbjct: 62 YDKGLSKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVM 121 Query: 123 QAPLIDQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 A + + RD + E+LY G+R SEL G+ + DI + + GKG KER VP Sbjct: 122 DAEMPEAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPF 181 Query: 182 GEEAVYWLETYLEHGRPWLLNG-VSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAGIDSE 239 G+ A + YL+ + L S + L + R Q++T ++ +K AV G+ ++ Sbjct: 182 GDAAAVAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPAD 241 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH LRHAF THLL GADLR +Q LLGH L+TTQ YT ++T + +++ + HPRA Sbjct: 242 -VHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPRA 299 >UniRef50_D2NUA7 Site-specific recombinase XerD n=3 Tax=Actinomycetales RepID=D2NUA7_9MICC Length = 437 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 141/243 (58%), Gaps = 15/243 (6%) Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S AR ++AVR + DP+A + PK +RLPK +S ++RLL P + Sbjct: 192 NSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAVPDRET 251 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLR-------------QGVVRVIGKGNKE 176 LR++A+LE LYATG RVSE++ + D+ G VR+ GKGNKE Sbjct: 252 ATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGNKE 311 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 RLVP+G A ++ YL RP L+ +G LF + R ++ RQ W +K A AG Sbjct: 312 RLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEAAEAAG 371 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + S+ SPH +RH+FATHLL GAD+RVVQ LLGH+ ++TTQ+YT V E L ++++ H Sbjct: 372 LSSD-FSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAH 430 Query: 296 PRA 298 PRA Sbjct: 431 PRA 433 >UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales RepID=XERC_CHLFF Length = 312 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 99/307 (32%), Positives = 159/307 (51%), Gaps = 25/307 (8%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------------------LTLATAQ 51 FLD L K + +TL Y DL+ +L G L + Sbjct: 8 FLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLFT 67 Query: 52 SDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPK 111 D ++ + E ++ + R LSA++ Y + + +DP+ + P+LP+ LP Sbjct: 68 KDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELPS 127 Query: 112 DLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 ++ QVE L+ P + + LRD+ +LE+ Y++GLR+SE+V L DI ++R+ G Sbjct: 128 PITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIRG 187 Query: 172 KGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKH 229 KG KER++P+ A WL+ YL H GV+ D +F + ++T ++ + + Sbjct: 188 KGKKERIIPITTLAAQWLKQYLNHPE---RAGVAKDSQAIFLNCFGTRLTTRSIDRKFQK 244 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 Y L+G+ S ++PH +RH ATH L +G DL+ +Q LLGHS L TT IYTHV+ + +Q Sbjct: 245 YLRLSGL-SGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQ 303 Query: 290 LHQQHHP 296 H + HP Sbjct: 304 THNESHP 310 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/299 (35%), Positives = 162/299 (54%), Gaps = 12/299 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-----RGLTLATAQSDDLQALLA 60 A + +L+ + + + +E+T+ AYRRDL + L G D A L Sbjct: 37 AHFDAYLENI-VREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAALR 95 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G A + AR LS+ R+ +L + DP+A ++ PK PQR+PK L + + R Sbjct: 96 RLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLNR 155 Query: 121 LLQAPL-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P+ PL +RD A+ E++Y +GLRVSE+ GL D+ L + V V GKG K+R V Sbjct: 156 MLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PL ++ L+ YL P LF + +++++ R+ +A + G D Sbjct: 216 PLTGKSAEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAING-DGR 270 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH++RH++A HLL D+R VQ LLGHS LSTTQIYT + + + +L+ + HPRA Sbjct: 271 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 329 >UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV23_9GAMM Length = 345 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 170/300 (56%), Gaps = 13/300 (4%) Query: 9 EQFLDALWL----EKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 +Q L WL K + T+ +YR+ L + + + + L L L RL+ Sbjct: 47 DQALVNRWLAELSNKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIRRLD 106 Query: 65 GGYKATSSARL-LSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + SS++ L+ +R+L+++L ++ +P+ + + P+ LP L + +LL Sbjct: 107 VDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQLLD 166 Query: 124 APLIDQPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + E +RDKAMLE+LY +GLRV ELVGL MSDI Q ++RV+GKG K R+V Sbjct: 167 QAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTRIV 226 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAGIDS 238 P+GE+A L YL H W+ +F S+R +++ +T RIK A AG+ + Sbjct: 227 PIGEKAWQALINYLPHRSLWVEE--QDPAVFVSERYGTRISTRTVQLRIKLQAKRAGV-A 283 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + L PH+LRH FA+H+L+ DLR VQ LLGHSD+STTQIYTH+ L Q++ + HPR+ Sbjct: 284 QDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHPRS 343 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 115/300 (38%), Positives = 163/300 (54%), Gaps = 26/300 (8%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL----- 63 + FL +E+ L+ +T +Y + L + + D A A R Sbjct: 8 QSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQ-------STHQDPYDAQTARRYLYVLY 60 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAH-LASPKLPQRLPKDLSEAQVERLL 122 E A++ ++ +S ++ +++ RE+ E P H L SPK Q LP +VE+LL Sbjct: 61 EKQLAASTVSQKVSCFKQFGKFMAREQGGE--PLFHDLTSPKKKQSLPTFAVPTEVEQLL 118 Query: 123 QAPL-IDQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 +A D P L+ RD A++EVLY TG+RV+EL G+ +S V V+GKG KER VP Sbjct: 119 EAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVP 178 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 +G+ AV L+ Y+E L GV + LF SQ+ +MT + +K +G+ Sbjct: 179 IGQYAVQALQRYIE-----LRKGVGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGVH 233 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + L+PH LRH+FAT LL GADLR VQ LLGH LSTT YTHV+TERLR ++Q HPR Sbjct: 234 -KPLTPHSLRHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 166 bits (421), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 162/294 (55%), Gaps = 5/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 + FL + EK +++T+ Y RDL+ + +L + + A L+ +A + G Sbjct: 16 VSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFVAMLFDKG 75 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ R ++ ++ F ++ ++ +D+P+ L PK Q+ K + + LL AP Sbjct: 76 LAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLDAPD 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D+P +RD + E++Y TG+RVSELVGL +SDI + V GKG KER+VP+ + + Sbjct: 136 KDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIVPIADMHI 195 Query: 187 YWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + YL+ + + NG D +F ++ ++T ++ ++ Y +AG+ + SPH Sbjct: 196 EMINDYLDV-KMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPMD-FSPH 253 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH++ATHLL GADLR +Q LLGH L+TTQ YTH+ L +++ HP A Sbjct: 254 SFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307 >UniRef50_C9RKS4 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKS4_FIBSS Length = 298 Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 170/301 (56%), Gaps = 19/301 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I+ FL L ++ +E T+ YR+ L + ++ A ++ + + +++ Sbjct: 7 IQNFLIYLQTQRRYSERTVITYRKSLEKYLATINENAPLEAFSEMNVKAFVWDLKIKQKL 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRL-----PKDLSEAQVERLL 122 TS L+A++ +YL R K + +P+ + PK P+RL KDL+E + L Sbjct: 67 APTSICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKDLAEEKFPELP 126 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + P + Q +R + +LE++Y +GLR+SE L + + +++ +VRVIGKGNKER+VP+ Sbjct: 127 ENPTLPQ---VRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKERIVPIT 183 Query: 183 EEAVYWLETY----LEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 + + WLE + +E G +F S+ + +T + I + +L I Sbjct: 184 DTLISWLEKFRAVEIEAGH----TPTITSYVFLSENGKPYDIRTLRNDI--HNLLRDIGW 237 Query: 239 E-KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 E K SPHVLRH+FATHLL +GA++ V+ +LGHS++STTQIYTHV ERL+Q ++ HPR Sbjct: 238 EGKASPHVLRHSFATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQAFKKTHPR 297 Query: 298 A 298 A Sbjct: 298 A 298 >UniRef50_Q8XTL6 Tyrosine recombinase xerC 2 n=1 Tax=Ralstonia solanacearum RepID=XERC2_RALSO Length = 347 Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 169/303 (55%), Gaps = 22/303 (7%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG- 66 +E +AL L + +T+ A R + + W RG+ AQ D+ + ER + Sbjct: 23 MEAHFEAL-LVTGYSADTVRARRISIRRFIVWCEERGI----AQPADVTRAVLERYQRHL 77 Query: 67 --YKATSSARL--------LSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKD-LSE 115 Y+ + A L L+ ++ F++L RE +P++ L PKLP+ LP+ LS Sbjct: 78 FYYRKPNGAPLTLGSQHGALAPLKTWFKWLARENHILYNPASELDLPKLPKHLPRAILSV 137 Query: 116 AQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI--SLRQGVVRVIGKG 173 +VE +L P LRD+AMLE+LY+TG+R E+ GL + D+ + R VR GKG Sbjct: 138 QEVEAILAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALYDVDATRRLAFVR-DGKG 196 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 K+R+VP+G A+ WL+ YL RP L+ + LF + + ++ + R+K Y Sbjct: 197 AKDRVVPVGVRALAWLDRYLLEARPQLIVA-EREALFVTDYGEPVSPEYVASRVKRYMEF 255 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AGI + H+LRHA ATH+L GAD+RV+Q LLGH+ L+TT+IYTHV+ E LR +H Sbjct: 256 AGIQKPGAT-HLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYTHVSIEHLRAIHDA 314 Query: 294 HHP 296 HP Sbjct: 315 THP 317 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 171/295 (57%), Gaps = 16/295 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I +F++ L + + +TL AYR D+ ++ + + ATA +L+ LA+ G Sbjct: 5 IRRFIEHLAVAGR-SPHTLAAYRADIELLENMMQAKSARDATAA--ELRKALAKLHAQGL 61 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK----LPQRLPKDLSEAQVERLLQ 123 + S AR LS+ R+ + +L R RED+P+A L +PK LP+ LP D + A ++R+ Sbjct: 62 SSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEG 121 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + L+ RD+A+ E++Y+ GLR+SE V L + D+ ++R+ GKG KERLVP+G Sbjct: 122 ----ESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGA 177 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 EA+ L T+L G+ LF + ++ + R++ +A+ G + + P Sbjct: 178 EAMLRLRTWLGERSA----GMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGA-GQHVHP 232 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FA+H+L DLR VQ LLGH++LS+TQIYT + + L +++ HPRA Sbjct: 233 HMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRA 287 >UniRef50_Q2RV24 Tyrosine recombinase XerC subunit n=10 Tax=Alphaproteobacteria RepID=Q2RV24_RHORT Length = 330 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/294 (39%), Positives = 157/294 (53%), Gaps = 16/294 (5%) Query: 16 WL--EKNLAENTLNAYRRDLSMMVEWLH-HRG-----LTLATAQSDDLQALLAERLEGGY 67 WL E+ + +TL+AY RDL+ + +L +RG TLA+ D +A +A RL G Sbjct: 41 WLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLTQGL 100 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ--AP 125 S AR LS +R LF++L RE + A + SP+ PQ +PK LSE++ L + Sbjct: 101 SRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALSVASD 160 Query: 126 LIDQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 L D P L RD A+ +LY GLR+ E + L D+ + V+R+ GKG KERLVPL Sbjct: 161 LQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGE-VMRITGKGRKERLVPLLPV 219 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 V L YL G D LF R +++ +++ G+ E +PH Sbjct: 220 VVEALADYLAA---CPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGL-PETATPH 275 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL G DLR +Q LLGH+ LSTTQ YT V L LH HPRA Sbjct: 276 ALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHPRA 329 >UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAZ0_SORC5 Length = 358 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 168/336 (50%), Gaps = 47/336 (13%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH--------HR-----------GLTLA 48 I +FL L E+ + +T+ AYRRDL + + HR G T A Sbjct: 19 IARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHRPARARGKAPATGKTPA 78 Query: 49 TAQS---------------DDLQALLAERLEGGYKAT----SSARLLSAVRRLFQYLYRE 89 T ++ D L LL G T S AR + A R L +YL R Sbjct: 79 TGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSLARTHAPASIARKVGAARALLRYLERR 138 Query: 90 KFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRV 149 + + +A LA PK+ + LP L +++ P + LRD+AMLE LY GLRV Sbjct: 139 GEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGLRDRAMLETLYGAGLRV 198 Query: 150 SELVGLTMSDISLR---QGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVS- 205 SEL GL ++ + R + VRV+GKG+KER+VPLG A+ +E YLE R L + + Sbjct: 199 SELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIERYLER-RDELADPTTG 257 Query: 206 ---IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLR 262 LF S+R ++ + ++ Y L G L PH LRH ATHLL+ GADLR Sbjct: 258 ARDPRALFLSRRGARIGVRRVQALVQRYGAL-GAGRADLHPHALRHTCATHLLDGGADLR 316 Query: 263 VVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +Q LLGH+ L+TTQ YTHV+ + L +++ HP A Sbjct: 317 AIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMA 352 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 13/300 (4%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT----LATAQSDDLQALLAERLEG 65 +F+ L E+ L+ T+ AY DL E ++ T L+ +D ++ LA L Sbjct: 24 RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAA-LHK 82 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 K TS AR LS +R + +L + ++P+A +A PKL ++P L V LL + Sbjct: 83 TRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSL 142 Query: 126 LIDQPL------ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 R+ A+ E +Y+TG+RVSEL G+ SD+ +G+VRV+GKG+KER+V Sbjct: 143 NAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIV 202 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSI-DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P+G +A+ ++ YL + LF + R +++T ++ HR+ + Sbjct: 203 PVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSV-HRLLRMELRRCGLW 261 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + LSPH LRH FATHLLN GADLR +Q +LGHS+LSTTQ YTHV ++L +++ HPR+ Sbjct: 262 QHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRS 321 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/289 (33%), Positives = 164/289 (56%), Gaps = 5/289 (1%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGYKA 69 F + EK + +T + Y RDL + G+ L + ++ +A G Sbjct: 15 FYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASLHRQGLAG 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S R LS++R FQY R + +P+ +A+PK P++LPK L Q + + A D Sbjct: 75 KSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV-AVEGDD 133 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 + RD+A+LE++Y++GLR++E+ L + DI +V V GKG+K R +P+G A+ L Sbjct: 134 FIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGSVAIAAL 193 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 + +L + S LF +QR ++++ + R++ +V G+D+ + PH+LRH+ Sbjct: 194 KDWLSQREQYA--PASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNP-VHPHMLRHS 250 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FA+H+L DLR+VQ LLGH+++STTQIYTH+ + L +++ + HPRA Sbjct: 251 FASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRA 299 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 164 bits (415), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 171/294 (58%), Gaps = 9/294 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSD--DLQALLAERLEGG 66 EQFL L E++ + T+ AY++DL+ ++ G Q DL+ L L G Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYL---LATG 61 Query: 67 YKATSS--ARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 K SS +R LS+++ +++L R + DP+ + + ++LP+ + +V +++++ Sbjct: 62 QKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRS 121 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 +PL +R++A++ + YATG+R+SEL L + + L G++ V GKGNK+R V +E Sbjct: 122 LNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQE 181 Query: 185 AVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + +LE YL+ RP LL N +F ++ + ++ + ++ AG+ + P Sbjct: 182 SKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGL-TAGAHP 240 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H LRH+FAT +LN+GADLR VQ LLGH DLSTTQIYTHV+ + L ++QH PR Sbjct: 241 HELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 172/321 (53%), Gaps = 31/321 (9%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDL-SMMVEWLHHRG-----LTLATAQSDDLQA 57 +L +++F D L E+ L+ +T YRRDL + + + G LA D + A Sbjct: 2 ELPYLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILA 61 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 L G T+ R ++A+R F Y+ RE +P+A ++SPK P+RLP+ S Q Sbjct: 62 FLGRGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQ 121 Query: 118 VERLLQA----PLIDQPLE-----------LRDKAMLEVLYATGLRVSELVGLTMSDISL 162 LL PL + + LRD A+LE+LY+ GLR+SE L +D+ L Sbjct: 122 TLNLLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDL 181 Query: 163 RQGVVRVI-GKGNKERLVPLGEEAVYWLETYLE---HGRPWLLNGVSIDVLFPSQRAQQM 218 R G +RV GKG K+R+VPLG AV +E +L+ +P L + +F Q +++ Sbjct: 182 RGGELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQL---DPMGPIFTGQLGKRL 238 Query: 219 TRQTFWHRIKHYAVLAGID-SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQ 277 + ++ + A +D E ++PH LRHAFATHLL GADLR +Q ++GH+ LS TQ Sbjct: 239 NSREGQRLLEKWR--ARLDLPESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQ 296 Query: 278 IYTHVATERLRQLHQQHHPRA 298 YTH+ + L +++ HPRA Sbjct: 297 KYTHLDMQALAKVYDAAHPRA 317 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 412 e-114 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 411 e-113 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 403 e-111 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 396 e-109 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 390 e-107 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 388 e-107 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 388 e-106 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 387 e-106 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 385 e-106 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 383 e-105 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 379 e-104 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 377 e-103 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 377 e-103 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 377 e-103 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 376 e-103 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 376 e-103 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 375 e-103 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 374 e-102 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 374 e-102 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 371 e-101 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 370 e-101 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 370 e-101 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 370 e-101 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 369 e-101 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 368 e-100 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 368 e-100 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 367 e-100 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 367 e-100 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 367 e-100 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 367 e-100 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 366 e-100 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 366 e-100 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 366 e-100 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 365 e-100 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 365 1e-99 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 363 3e-99 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 363 5e-99 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 363 6e-99 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 362 1e-98 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 361 2e-98 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 361 2e-98 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 361 2e-98 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 360 2e-98 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 360 2e-98 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 360 4e-98 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 360 4e-98 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 360 5e-98 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 360 5e-98 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 359 6e-98 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 359 7e-98 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 358 1e-97 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 358 1e-97 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 358 2e-97 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 357 2e-97 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 357 2e-97 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 357 2e-97 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 356 4e-97 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 356 6e-97 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 355 8e-97 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 354 2e-96 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 353 3e-96 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 353 6e-96 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 351 1e-95 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 351 1e-95 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 351 1e-95 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 351 2e-95 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 351 2e-95 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 351 2e-95 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 351 2e-95 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 351 2e-95 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 350 3e-95 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 350 4e-95 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 350 4e-95 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 349 7e-95 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 349 8e-95 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 349 8e-95 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 349 8e-95 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 348 9e-95 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 348 9e-95 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 348 1e-94 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 348 1e-94 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 348 1e-94 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 348 1e-94 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 348 1e-94 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 348 2e-94 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 348 2e-94 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 347 2e-94 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 347 3e-94 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 347 3e-94 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 346 4e-94 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 346 4e-94 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 346 4e-94 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 346 4e-94 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 346 5e-94 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 346 5e-94 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 346 8e-94 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 345 8e-94 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 345 8e-94 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 345 9e-94 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 345 1e-93 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 344 2e-93 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 344 3e-93 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 343 3e-93 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 343 3e-93 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 343 3e-93 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 343 4e-93 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 343 4e-93 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 343 4e-93 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 343 5e-93 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 343 5e-93 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 343 5e-93 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 343 5e-93 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 343 6e-93 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 342 7e-93 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 342 7e-93 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 342 7e-93 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 342 1e-92 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 341 1e-92 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 341 1e-92 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 341 2e-92 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 341 2e-92 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 341 2e-92 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 341 2e-92 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 340 3e-92 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 340 3e-92 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 340 3e-92 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 340 3e-92 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 340 4e-92 UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax... 340 5e-92 UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacil... 340 5e-92 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 339 6e-92 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 339 7e-92 UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyc... 339 7e-92 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 339 7e-92 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 339 9e-92 UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriace... 338 2e-91 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 338 2e-91 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 337 2e-91 UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum t... 336 5e-91 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 336 6e-91 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 336 7e-91 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 336 8e-91 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 335 1e-90 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 335 1e-90 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 335 1e-90 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 335 2e-90 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 335 2e-90 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 335 2e-90 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 335 2e-90 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 334 2e-90 UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales ... 334 3e-90 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 333 3e-90 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 333 4e-90 UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes ... 333 5e-90 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 333 7e-90 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 332 1e-89 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 331 2e-89 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 331 2e-89 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 330 3e-89 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 330 3e-89 UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n... 330 3e-89 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 330 3e-89 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 330 3e-89 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 330 3e-89 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 330 4e-89 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 330 5e-89 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 329 6e-89 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 329 9e-89 UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira Rep... 328 1e-88 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 328 1e-88 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 328 1e-88 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 328 1e-88 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 328 1e-88 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 328 1e-88 UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 328 1e-88 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 328 2e-88 UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria Rep... 328 2e-88 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 328 2e-88 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 327 2e-88 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 327 2e-88 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 326 4e-88 UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteoba... 326 6e-88 UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochlori... 325 1e-87 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 325 1e-87 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 324 3e-87 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 323 3e-87 UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular orga... 323 5e-87 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 322 8e-87 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 322 8e-87 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 322 8e-87 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 322 9e-87 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 322 1e-86 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 322 1e-86 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 321 1e-86 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 321 1e-86 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 321 1e-86 UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID... 321 2e-86 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 321 2e-86 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 321 3e-86 UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteria... 320 3e-86 UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcu... 320 3e-86 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 320 3e-86 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 320 4e-86 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 320 5e-86 UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desu... 320 6e-86 UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales R... 319 6e-86 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 319 6e-86 UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter seg... 319 7e-86 UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybac... 319 8e-86 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 319 9e-86 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 319 1e-85 UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepI... 318 1e-85 UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroi... 318 2e-85 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 318 2e-85 UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepI... 318 2e-85 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 317 2e-85 UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilag... 317 3e-85 UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella Rep... 316 4e-85 UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacterac... 315 1e-84 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 315 2e-84 UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadacea... 314 2e-84 UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga ... 314 2e-84 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 314 3e-84 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 314 3e-84 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 313 4e-84 UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Br... 313 7e-84 UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychr... 313 7e-84 UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax... 313 7e-84 UniRef50_Q5PBX3 Integrase/recombinase n=6 Tax=Anaplasmataceae Re... 312 8e-84 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 312 8e-84 UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella den... 312 8e-84 UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobact... 312 8e-84 UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobact... 312 1e-83 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 312 1e-83 UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteracea... 312 1e-83 UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia ... 312 1e-83 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 311 1e-83 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 311 2e-83 UniRef50_B3PPF3 Tyrosine site-specific integrase/recombinase pro... 311 2e-83 UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Prote... 311 2e-83 UniRef50_A3HVT2 Putative site-specific recombinase n=1 Tax=Algor... 311 2e-83 UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomi... 311 2e-83 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 310 3e-83 UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=... 310 3e-83 UniRef50_Q98FX8 Tyrosine recombinase xerD n=2 Tax=Mesorhizobium ... 310 4e-83 UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae ... 310 6e-83 UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepI... 309 6e-83 UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter ... 309 6e-83 UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipple... 309 6e-83 Sequences not found previously or not previously below threshold: UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 311 2e-83 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 204/296 (68%), Positives = 241/296 (81%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 QD +EQFLDA+W+E+ LAENTL +YR DL +++W+ L LQ + Sbjct: 10 QDFGYVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYL 69 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 ++ YK TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLPQRLPKD+SE QV+ LL Sbjct: 70 VDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALL 129 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 AP + P+ELRDKAMLE+LYATGLRV+ELV LTM +ISLRQGVVRV GKG KERLVP+G Sbjct: 130 DAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMG 189 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E A+ W+ET+++ GRP LL S DV+FPS+RA+QMTRQTFWHRIK YAV+AGID++ LS Sbjct: 190 ENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLS 249 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+Q+H QHHPRA Sbjct: 250 PHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 205/295 (69%), Positives = 241/295 (81%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D +EQFLDA+W+E+ L+ENTL +YR DLS ++ W+ L LQ Sbjct: 26 DHGLVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLA 85 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + +K TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLP+RLPKDLSE QV+ LL+ Sbjct: 86 DADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLE 145 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP + P+ELRDKAMLE+LYATGLRV+ELV LTM +ISLRQGVVRVIGKG KERLVP+GE Sbjct: 146 APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGE 205 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 AV W+ET++E GRP LL S DV+FPS+RA+QMTRQTFW+RIKHY+V+AGID+E LSP Sbjct: 206 NAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSP 265 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+Q+H QHHPRA Sbjct: 266 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 403 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 204/296 (68%), Positives = 250/296 (84%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 ++LA I+ FL+ W+EK L+ENT+ +YR DL+ + +WL L+L T + DLQ L ER Sbjct: 2 KNLALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGER 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 LE GYKATS+AR+LSA+R+LFQYLYREK+R DDPSA L+SPKLP RLPK L+E QV LL Sbjct: 62 LEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P ++ PLELRDKAMLE+LYATGLRV+ELV LT+ ++S++QGVVRVIGKGNKER+VP+G Sbjct: 122 NTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 EEA YW+ ++ +GRP LLNG S DV+FPSQRAQQMTRQTFWHR+KHYA+LA ID++ LS Sbjct: 182 EEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALS 241 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRHAFATHL+NHGADLRVVQMLLGH+DLSTTQIYTHVA ERL++LH++ HPR Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 131/296 (44%), Positives = 187/296 (63%), Gaps = 2/296 (0%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAER 62 + I+++L+ L +EK + NTL AY RDLS + RG+ + DD+ +AE Sbjct: 2 NFQLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAEL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A S R L+A+R +++L REK E +P A + K+ RLP LS ++++LL Sbjct: 62 KRKGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P + +RD AMLE++YATGLRVSEL+ LT I+ + G + V GKGNKER+VP+G Sbjct: 122 SQPGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + A + Y + RP + G +VLF ++ Q MTRQ FW ++ YAV AG+ +K+ Sbjct: 182 QVAYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQ-KKVH 240 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH RH+FA+HLL GADLR VQM+LGH+D+STTQIYTHV E L+ +H+++HPR Sbjct: 241 PHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPRG 296 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 121/293 (41%), Positives = 192/293 (65%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 IE F+ L EK LA N+ AY+RDL ++L R L+ D+ A LA +L+ Sbjct: 5 IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G +S AR LS+++ +++L E + +PS+ L +PK+ ++LP+ LS +V++L++ P Sbjct: 65 GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 PL +RD+AMLE++Y TG+RVSEL+ L + D++ G +R +GKG KER++P+ + + Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + W++ YL R L+ LF + R + ++RQ F+ + +Y A ++ E ++PH Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKE-VTPHT 243 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ +LGH+D+STTQIYTH+ RLR+++QQ+HPR+ Sbjct: 244 LRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 388 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 118/305 (38%), Positives = 186/305 (60%), Gaps = 11/305 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT------LATAQSDD 54 M+ D I+ FL+ L +EK +ENT AY DL M+ + Sbjct: 1 MRDD---IQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQT 57 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 + A + + E Y T+ R ++A + F ++ E +++P+ ++++PK+ + LP +S Sbjct: 58 MLAYMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAIS 117 Query: 115 EAQVERLLQAPLIDQPLEL-RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 +QV LL P+ E RDKAMLE+LYA+G+RV+ELV L + D+ L++G VR GKG Sbjct: 118 ISQVRALLNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKG 177 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KER++P+ +A ++ YL RP L+ + LF ++R ++TRQ W +K YA Sbjct: 178 RKERMIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYARE 237 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG+D + ++PH LRH+FATH+L+ GADLR VQ LLGH+++STTQIYTH+ +E +++ +++ Sbjct: 238 AGLD-DVVTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEK 296 Query: 294 HHPRA 298 HPRA Sbjct: 297 AHPRA 301 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 137/295 (46%), Positives = 186/295 (63%), Gaps = 4/295 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLT-LATAQSDDLQALLAERLE 64 IE FL L +E+ L+ NT+ AY RDL V ++ +GLT T + D+ +A + Sbjct: 4 LIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFARQ 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G A S AR ++++R F YL + DP + +PK Q LPK L+ VE+LL + Sbjct: 64 EGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLSS 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 PL LRD+AM+E+LYATGLRV+ELV L M D+ L G ++ IGKG+KER++PLG+ Sbjct: 124 SDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKT 183 Query: 185 AVYWLETYLEHGRPWLLNGV-SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A LE YLE RP L D +F + Q +TRQ FW +K A +GI+ + ++P Sbjct: 184 ATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIE-KPITP 242 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL +GADLR VQ LLGH+D+STTQIYTHV RL+ +++Q HPRA Sbjct: 243 HTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 128/294 (43%), Positives = 182/294 (61%), Gaps = 3/294 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLE 64 +I+ F+ + +E+ L++NT+ +Y RDL +L + L + Sbjct: 4 QIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKD 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G +SAR L+++R Q+L REK + DPS H+ + K + LPK L+ +VERLL Sbjct: 64 SGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDT 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P + P RDKAMLE+LYATG+RVSE++ L +D+ L G +R GKG KER+VP+GE Sbjct: 124 PKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEA 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A +E Y+ R LL D LF + +Q++RQ FW +K A+ AGI ++L+PH Sbjct: 184 AASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGI-KKELTPH 242 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ +LGH+D+STTQIYTHV RL+ +++Q HPRA Sbjct: 243 TLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 188/292 (64%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 IE++L + +EK L+ NT+ AYRRDL +++ ++ + +Q L ++ G Sbjct: 5 IEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A S AR +S +R Q+ REK+ DP+ L SPK ++LP L+ +V LL+ P Sbjct: 65 QSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPD 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +++ RD+ MLE+LYATG+RVSEL+ L + +++L G VRV GKG+KER+VPLG+ + Sbjct: 125 LNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAVI 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L TY+E RP LL +VLF + + ++RQ W IK V A I + L+PH L Sbjct: 185 EYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI-KKTLTPHTL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR VQ +LGHSD+STTQ+YTHV+ ++R+++ Q HPRA Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 383 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 184/292 (63%), Positives = 220/292 (75%), Gaps = 1/292 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 I+ FLD LW K L++NTL+AYR DL +L +GL L D++A LA R+E Sbjct: 10 LIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVEQQ 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + TSSARLLS++RR + YL + K DP A + SPKL + LP LSE+QV+RLL P Sbjct: 70 FARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPN 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +D P+E RDKAMLE+LYATGLRVSELVGLTM +SLRQG+VR+IGKG KERLVP+GE A+ Sbjct: 130 VDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEMAI 189 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +E YL R LL + DV+FPS+R+Q MTRQTFWHRIK YA AGI++E LSPH L Sbjct: 190 TEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE-LSPHTL 248 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RHAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA RL++LHQQHHPR Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG 300 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 127/295 (43%), Positives = 189/295 (64%), Gaps = 4/295 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +E FL+ L LE+N + NT +Y DL + WLH G+ A D++ + E E G Sbjct: 11 TLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIRKFIQELHEIG 70 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +A+S AR +SA+R ++L E+ +P+ ++ PKL + LP L+ ++ LL APL Sbjct: 71 LEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPL 130 Query: 127 IDQPLE---LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P LRDKAMLE LYATG+RVSEL+GL+ ++ + G VRV GKG+KERLVP+G+ Sbjct: 131 KRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVPVGQ 190 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ W++ YL+ RP +++ S D +F + R ++R W+ ++ +AV+AGI+ + +SP Sbjct: 191 TAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIE-KPISP 249 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H RH+FATHLL GADLRVVQ +LGHS + TQIYTH+ ++++H+ HPR Sbjct: 250 HTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPRG 304 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 122/293 (41%), Positives = 196/293 (66%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +I+ +L +E+ L+ NT+ AYR+DL + ++ G+ ++ D+ A LA + + Sbjct: 9 QIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAFLARQYDLN 68 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S +RL+S++R+ +Q+L R+ ++ +P + PK +RLP L++ ++ LL P Sbjct: 69 KATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEINDLLAQPD 128 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 I + L LRD+A+LE LYATG+RVSEL+ L + D+ G+VRV+GKG+KERL+P+ A+ Sbjct: 129 IKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIPISSVAL 188 Query: 187 YWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 +W++ Y + R L+ G + + +F + RA+Q+TRQ W IK Y AGI ++ ++PH Sbjct: 189 HWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGI-TKDVTPH 247 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LRH FATHLL +GADLRVVQ +LGHSD+STTQIYT+++ + + Q++Q+ HPR Sbjct: 248 TLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPR 300 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 125/299 (41%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M+++ ++L+ L +EKN++ TL YR DL V +L + ++ L+ + Sbjct: 1 MQEN---FNKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYM 57 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + + G S AR LSAVR ++YL RE + +P+ + +SP+L +RLP+ L+ A+V Sbjct: 58 SSLIAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVS 117 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +LL+ P P LRDKA +E+LYA+GLRVSELV L + ++ L +RV GKG+KER+V Sbjct: 118 KLLRMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIV 177 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 +G A+ ++TYL GRP L + LF + +++ ++F R+ A AGI+ + Sbjct: 178 LMGLPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIE-K 236 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+LRH FATHLL+ GADLRVVQ LLGHS+LSTTQIYTHV + R+++ HP A Sbjct: 237 HVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLA 295 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 123/300 (41%), Positives = 194/300 (64%), Gaps = 7/300 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALL 59 M+++L + F+D+L ++ L++NT+ +Y+RDL ++L + + + L Sbjct: 1 MQRNL---DYFVDSLAIQ-GLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFL 56 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + + GY +S++R++S +++ F++L +E+ E +P L PK + LPK L+ +V Sbjct: 57 QDLKQDGYATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVT 116 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 ++L + L LRDKAMLE+LYATG+RVSEL+ L +SD+ L G ++ IGKGNK+R++ Sbjct: 117 QVLNSCDTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRII 176 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSI-DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P+G+ A W++ YL + R L + + LF + R TRQ FW +K AG+ Sbjct: 177 PIGQAATNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGV-H 235 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + +SPH LRH+FATH+L GADLR+VQ LLGHSD+STTQIYTH+ ER+++++QQ HPRA Sbjct: 236 KDVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRA 295 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 119/290 (41%), Positives = 184/290 (63%), Gaps = 4/290 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++E FL L EKN++ T+++YRRDL + +L G+ + + ++ Q L + Sbjct: 4 KLEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVALYKK- 62 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 YK S AR +S++R ++L RE + + S + PK+P LP+ L ++E L+ P Sbjct: 63 YKIKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFLKIPD 122 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 PL +R+ A+LE YATG+RVSELV L + ++ L + VR GKG KER+VPLG+ AV Sbjct: 123 PLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLGDYAV 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YL L N + LF +++ +++TRQ W IK Y+ + G+ +K+SPH Sbjct: 183 ESLKRYLSVR--HLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGL-PKKVSPHTF 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 RH+FATHLL++GAD+R+VQ LLGHSD++TTQIYTH+ + +L +++Q+ HP Sbjct: 240 RHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHP 289 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 129/296 (43%), Positives = 194/296 (65%), Gaps = 4/296 (1%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 + +++FL+ L EK L+ NT+ +Y DL ++WL + + + + DD+ L Sbjct: 2 EQKEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E Y +TS AR+LS++++ F+++ + DP+ L SPKL RLPK L +V+RLL Sbjct: 62 KEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + +++ LRD AMLE++YA+GLRVSELV L +SDI+ G +RV GKG+KER+VP+ Sbjct: 122 -SVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIA 180 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + ++ ++ YL RP LL + + +F + R Q MTRQ FW IK +AG+ ++ Sbjct: 181 QRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGV---NVT 237 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH++RH+FATHLL GADLR +Q +LGHSD+STTQIYT V+ +RLR+ + +HHPRA Sbjct: 238 PHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRA 293 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 133/319 (41%), Positives = 189/319 (59%), Gaps = 24/319 (7%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 Q A ++++L L +E+ L+ NT N+Y RDL +L RG + + +DL L + Sbjct: 4 QTEAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQE 63 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A + AR L+ +R F +L E+ REDDP+ +L++PKL Q LP LSE + +L+ Sbjct: 64 KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123 Query: 123 -----------------------QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSD 159 + D+ L +R+ AM+EVLY GLRVSELVGL +SD Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183 Query: 160 ISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMT 219 I +R GKGNKER+VP+GE A+ L+ YLEH R L +VLF + R +T Sbjct: 184 IIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243 Query: 220 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 RQ W +K +A G+ E + PH RH+FATHLL+HGADLR VQ +LGH+D++TTQIY Sbjct: 244 RQGIWDILKKWAQTHGVQ-ENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIY 302 Query: 280 THVATERLRQLHQQHHPRA 298 TH++ +RL ++ ++ HPRA Sbjct: 303 THLSRQRLLEVFRKAHPRA 321 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 132/289 (45%), Positives = 182/289 (62%), Gaps = 4/289 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 FL+ +EK L+ N+++AY DL+ V++ +++ + + G Sbjct: 18 AFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQEPPG---VPEIRQYIDHLYQTGLSN 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S R L+ +R + +L RE DP+ HL +P+ Q +PK L+ ++ER++QAP + + Sbjct: 75 RSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAK 134 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 PL LRD+AM+EVLYA+GLRVSEL L + D+ L V+R GKGNK+RLVP+G+ AV + Sbjct: 135 PLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAV 194 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 YLE GRP LL G + LF + R MTRQ FW + Y AGI L+PHVLRH+ Sbjct: 195 RAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGI-FHGLTPHVLRHS 253 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR VQ++LGH+D+STTQIYTHV RLR ++HHPRA Sbjct: 254 FATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 117/292 (40%), Positives = 177/292 (60%), Gaps = 8/292 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+++L + ++N + TL AYR DL + +L G T LA L+ LA + Sbjct: 14 IDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFLKKKN 73 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 T+ AR L+++R L+++L + E +P + +PK ++LP +S E LL P Sbjct: 74 PSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILLNQPD 133 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRDKA++E LY+TG+RVSELVG+ ++DI G+V+V GKG+KER++P+G A+ Sbjct: 134 TCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVGNHAL 193 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YLE + + LF ++ ++T ++ I+ Y A + ++SPH Sbjct: 194 NAIQLYLEKRK------ADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHL-RVSPHTF 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL++GADLR VQ LGHS LSTTQIYTHV TERL+Q++ + HPRA Sbjct: 247 RHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 113/301 (37%), Positives = 178/301 (59%), Gaps = 7/301 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M I FL+ + L+K + +TL AY+ DL + + + ++ ++ Sbjct: 1 MTNTQFYITNFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAK---VEPEKVEPIVIRGFIS 57 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E++ G T+ AR LS +R F YLY E F + +P+ ++S K+ + LPK L+ + Sbjct: 58 EQILKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFK 117 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L++AP D+ RDKA+LE+ Y++G+RVSEL GL + D+ L++G+++V GKG KER+VP Sbjct: 118 LVEAPSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVP 177 Query: 181 LGEEAVYWLETYLEHG---RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 +G++A L+ YL R + LF + R Q+++ + ++ YA G+ Sbjct: 178 VGQKAKEALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGVL 237 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 EK+ PH LRH FA+HLL GADLRV+Q LLGH+ LSTTQIYTHV + L +++ + HP Sbjct: 238 -EKIGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPL 296 Query: 298 A 298 + Sbjct: 297 S 297 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 117/289 (40%), Positives = 180/289 (62%), Gaps = 3/289 (1%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKA 69 FLD L +K L+ NTL +Y+RD+ + +L + +A + A L + G Sbjct: 10 FLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRAT 69 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 ++ +R L+++R +QYL ++ DP+ +L SPK+ ++LP+ LS +VE LL+ P D Sbjct: 70 STISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDD 129 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 RDKAMLE+LYATG+RVSEL+ L + D++L +R KG +ER+VP+G +V L Sbjct: 130 LKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCN-KGARERIVPIGSVSVNAL 188 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 + YL R L+ LF + +++TRQ FW IK Y A I+ + ++PH LRH+ Sbjct: 189 QEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKIN-KDITPHTLRHS 247 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FA HLL +GADLR +Q +LGHSD+S+TQIY +A R+++++++ HPRA Sbjct: 248 FAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 124/297 (41%), Positives = 176/297 (59%), Gaps = 8/297 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEW-LHHRG--LTLATAQSDDLQALLAERLE 64 IEQF L LEKN + +T+ +YR D+ E+ L H G + A ++A LA Sbjct: 8 IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y T+ AR ++A+R +++L RE + +P + +PK+ ++LP L E +V LL+ Sbjct: 68 DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P D L RD A+LE+LYATG+RV+EL GL SD+ L V V GKG KER+VP+G Sbjct: 128 P-ADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRT 186 Query: 185 AVYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A LE YL RP L LF + + +T ++ I Y + ++K+ Sbjct: 187 AAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAV-AKKV 245 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH +RH FATH+LN+GADLR VQ +LGH +LSTTQ+YTHV ERL+ ++++ HPRA Sbjct: 246 SPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 117/292 (40%), Positives = 178/292 (60%), Gaps = 2/292 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 I F+ L +E+ LA T +Y++DL+ + WL + T +QA L + + Sbjct: 4 LIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTK 63 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S +R++SA+R+ +++L RE + DP + +PK Q LP LS +++ L+ P Sbjct: 64 -APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPD 122 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +PL LRD+A+ E++YATGLRVSE+VGL + + L +++V GKG+KERLVP+ +A Sbjct: 123 TTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAA 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+ YL+ RP L+ +F + +TRQ W +K Y GI+ + ++PH L Sbjct: 183 DWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIE-KDVTPHTL 241 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FAT LL +GADLRVVQ LLGHSD+STTQIYTH++ + L ++ + HPR Sbjct: 242 RHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG 293 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 126/292 (43%), Positives = 179/292 (61%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA-TAQSDDLQALLAERLEGG 66 ++ F DAL +E+ + T+ AYRRD+ + G+T A L+ + + G Sbjct: 22 LQAFEDALQIEEGASPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDLG 81 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R +SA+R F+ + E DP+ L SP+ + LP+ LS +V RLL AP Sbjct: 82 LAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPG 141 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +D+ L RD+AMLE+ Y GLRVSE +G+++ D+ L +VRV+GKGNKERLVP+G A+ Sbjct: 142 LDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSAI 201 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + YL RP L G +LF + R ++R W ++ Y +AGI+ + +SPH L Sbjct: 202 GAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIE-KPVSPHTL 260 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GADLR VQ +LGH+D++TTQIYTHV E LR +H+Q HPRA Sbjct: 261 RHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 113/291 (38%), Positives = 183/291 (62%), Gaps = 5/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL+ L LE+N + NT+ AY RD+ E+L +G + + DL+ L + L Sbjct: 5 LKAFLNYLLLERNYSPNTIAAYERDILDFQEFL--QGKSFLSVNEVDLKQFLVDILRKNR 62 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 ++AR + A+R +++L R F +++P+ L PK+P+ LP+ L+ +V ++++ Sbjct: 63 SRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQEN 122 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 P LR++A+LE+ Y GLR+ E+ GLT++D+ L QG VRV GKG ++R+VPLG+ A+ Sbjct: 123 STPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYALD 182 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ YLE GRP + LF +Q+ +T + + I AG++ + ++PH R Sbjct: 183 SLKLYLEAGRPAF--KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRK-ITPHTFR 239 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H++ATHLL GAD+R VQ LLGH LSTT+IYTH++ ERLR+++ + HPR+ Sbjct: 240 HSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRS 290 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 183/292 (62%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I FL+ L +E LA NT +Y RDL + W+ L + +D+ A + Y Sbjct: 14 INLFLEYLTVELGLAYNTRESYGRDLRLFAGWIKK---PLEDVKREDILAYMRMLKVHQY 70 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS++R L+A++ F+++ E F E+DPS + + LPK +S +V++L AP + Sbjct: 71 APTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDL 130 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 QP RD+ MLEV+YATG+RVSEL+ L + ++L V GKG KERL+PLG+ A+ Sbjct: 131 TQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQ 190 Query: 188 WLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L+ YL RP + NG D LF + R MTRQ FW I+ Y V AG+ + L+PH+L Sbjct: 191 YLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQ-KPLTPHIL 249 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L++GADLR VQ LLGH+D+STTQIYTH+ RL+++ + HPRA Sbjct: 250 RHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 367 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 159/298 (53%), Positives = 201/298 (67%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + ++L+ ++ F D L + ++ +T NAY DL E HR +L S+D+ +L Sbjct: 14 IPENLSFLQGFRDYLVAQT-VSPHTRNAYLSDLIQCSEL--HRTASLPQWSSEDIGDVLI 70 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E + G S AR LSA+R+ +++L +K RED+P A SPK+ + LPKDLSE VE Sbjct: 71 ELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEA 130 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+ AP I L LRD+AM EVLYA GLRVSEL+ L + I+L+QG VR+ GKGNKERLVP Sbjct: 131 LINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ A W+E YL RP L + D LF +Q M+RQ FW+ IK YA+ A I +E Sbjct: 191 LGQYACDWIEKYLAESRPQLYKS-NTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE- 248 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA R++ LH Q+HPR Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPRG 306 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 162/298 (54%), Positives = 203/298 (68%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + + L+ ++ F D L + ++ +T NAY DL E LH + L SDD+ +L Sbjct: 14 IPEHLSFLQGFRDYLVAQT-VSPHTRNAYLSDLIQCSE-LHKKN-RLPDWTSDDISDVLI 70 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E + G S AR LSA+R+ +++L +K R D+P A SPK+ + LPKDLSE VE Sbjct: 71 ELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEA 130 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+QAP I L LRD+AM EVLYA GLRVSEL+ L + I+L+QG +R+ GKGNKERLVP Sbjct: 131 LIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ A W+E YL RP L S D LF +Q M+RQ FW+ IKHYA+ A I +E Sbjct: 191 LGQYACDWVERYLNEARPQLYKS-STDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE- 248 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA R++QLH++HHPR Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPRG 306 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 190/298 (63%), Gaps = 4/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M + F+ + +EK L+ENT+ AY+ D+ + + + ++L + +D+ L Sbjct: 1 MTDCKEALNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLW 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E G K S R++ ++R+ +++L E +++P+ +LA+P LP+ LP L+ +V+ Sbjct: 61 EMKTEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDL 120 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL + D + +R+KAMLE+LYA GLRVSEL+ L SDI+L +R+IGKG+KERLVP Sbjct: 121 LLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVP 180 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G +A +++ YL+ RP L D +F S+ ++++R FW ++K+ A GI+ + Sbjct: 181 FGNKAKFFISIYLKKRRPCL---NVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGIN-KN 236 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+FA+HLL GAD+R VQ +LGH+ ++TTQIYTH+ +R+ Q H++ HPR Sbjct: 237 ITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPRG 294 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 105/292 (35%), Positives = 181/292 (61%), Gaps = 1/292 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++ F + L +EK L++N++ +Y DL+ +L + Q+DD+ L E + Sbjct: 8 LLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNEEKDRK 67 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + + AR + A+R+ +++L EK + +P+ + +P++ + +P L++ ++E L + Sbjct: 68 ISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIK 127 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D ELRDK + E+LY++GLR+SE L ++D+ L + V GKG ++RLVP GE+++ Sbjct: 128 EDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGEKSL 187 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L YL+ RP++L + + LF S++ + R++ W + HY I +K++PH L Sbjct: 188 DILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIL-KKVTPHTL 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL + ADL+ VQ LLGH D++TTQIYTH+A + LR++H++ HPR Sbjct: 247 RHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPRG 298 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 118/294 (40%), Positives = 176/294 (59%), Gaps = 5/294 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGY 67 E+FL L +E+N + NT+ Y+ DL +L RG T D+++ LA+ Sbjct: 10 ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQLHREEK 69 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR +S++R ++YL RE + +P + +PKL ++LP L E ++ LL+ P + Sbjct: 70 ARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDL 129 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+A+LE LY+TG RVSELVGLT++ + L ++GKG+KER+VPLG + Sbjct: 130 STELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLGHPCIR 189 Query: 188 WLETYLEHGRPWLLNG---VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + YL R L+ S D +F + R +T ++ + Y +A I + +SPH Sbjct: 190 AMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQ-KHVSPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +RH FATHLL+HGADLR VQ LLGH+ LSTTQIYTHV +R+ ++++HHPRA Sbjct: 249 TIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 116/292 (39%), Positives = 170/292 (58%), Gaps = 4/292 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGY 67 +L L +E+ + T+ +Y DL+ + +L RG+ A DD+ A + GY Sbjct: 16 NDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGY 75 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S R LSA++ ++L E + +P+ ++ PK+P RLP LS ++V LL P Sbjct: 76 ADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFK 135 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D PL LRD+A LE+LY GLR SEL+ L + D+ +G++RV+GKG++ER+VP+G A Sbjct: 136 DGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQR 195 Query: 188 WLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L YLE+GRP L D + + R +++RQ ++ A I L PH L Sbjct: 196 VLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAG--ATIGRPDLHPHTL 253 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L GADLR +Q +LGHSD+STTQIY HV +R+ + HPRA Sbjct: 254 RHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRA 305 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 115/294 (39%), Positives = 187/294 (63%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 A +E+F++ L +K L+ NTL +Y+RD+ + +L +T + + A L + Sbjct: 3 ANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQK 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++ +R L+++R +Q+LY++K ++DP++ L SPK+ ++LP+ LS +VE LL Sbjct: 63 KGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLDQ 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P +RDKAMLE+LYATG+RVSEL+ L + DI+ G+++ KG +ER +P+G Sbjct: 123 PKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCN-KGTRERTIPIGSI 181 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + + YLE R +L+ LF + +++TRQ FW IKHY A I+ + ++PH Sbjct: 182 STAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKIN-KDITPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA HLL +GADLR +Q +LGHSD+S+TQIY +A +++ ++++ HPRA Sbjct: 241 TLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 365 bits (938), Expect = e-100, Method: Composition-based stats. Identities = 114/294 (38%), Positives = 178/294 (60%), Gaps = 3/294 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH--HRGLTLATAQSDDLQALLAERLE 64 I+ F L E L++NT++AY RDL +L H+ + QS ++ L + Sbjct: 4 LIKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKSIKK 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G A + +R L++++ ++L EK ++D + +A PK+ + LP LS +V +L+ Sbjct: 64 KGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEV 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 L LR+ A+LE++Y +GLRVSEL+ + + DI ++Q V V GKG+KER+VP+ + Sbjct: 124 IDKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDM 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ + YL R L+ D LF + + + ++R F+ +K A A +D EK+SPH Sbjct: 184 AIIAIRNYLVKARDDLIK-EKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPH 242 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +G DLR +Q LLGH D+STTQIYTH++ RL+Q++ + HPRA Sbjct: 243 TLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRA 296 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 365 bits (937), Expect = 1e-99, Method: Composition-based stats. Identities = 112/294 (38%), Positives = 183/294 (62%), Gaps = 2/294 (0%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLE 64 I+ F++ L +E A NT++ Y+ DL + +++L + + +T + + + + + Sbjct: 3 ELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEKH 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G S R + ++R +++L E + +P L SPKL ++LP + ++E LL A Sbjct: 63 RGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLSA 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + L +R+KA+LE+LYATG RVSE+ ++++ I+L G ++ GKG+KER+VPLG++ Sbjct: 123 ADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGKK 182 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A ++ YL RP + + + LF S+ + + R+ W +K+ A+ AGI +E +SPH Sbjct: 183 ASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGI-TEAISPH 241 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ +LGH +STTQIYTHV + L+ +HQ+ HPRA Sbjct: 242 KLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 122/294 (41%), Positives = 177/294 (60%), Gaps = 6/294 (2%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG--- 66 F+ L LE+ L+ NTL AYR DL +L G + DL A + GG Sbjct: 21 DFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGDLAAFVGALAAGGDGR 80 Query: 67 --YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 AT+ R ++ +R +++L RE+ + DP+A L P ++LPK LS +V+ LL Sbjct: 81 APAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEVQHLLSQ 140 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P P LRD+A+LE++YA GLR SE V + + ++ + G++R GKGNKERLVP+G + Sbjct: 141 PRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGNKERLVPIGSK 200 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L YL GRP ++ +F +QR +TRQ + ++ +A AG+ +K+SPH Sbjct: 201 ALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTAGL-GDKMSPH 259 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLL G DLR +Q +LGH+D++TTQIYTH++ ERLR ++ HPRA Sbjct: 260 TLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRA 313 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 363 bits (932), Expect = 5e-99, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 176/292 (60%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I F+D L +E LA NT +Y RDL + W+ + DD+ ++ Y Sbjct: 11 IALFMDYLTVEMGLARNTRESYGRDLRLFAVWVKK---PIKEISRDDILTYMSVLKAQNY 67 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TSSAR L+A++ F+++ E E DP + S LPK LS +V RL +AP + Sbjct: 68 AVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDL 127 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P RD+ MLEV+YATG+RVSEL+ L + ++L V GKG KERL+PLG A+ Sbjct: 128 DTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIE 187 Query: 188 WLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L+ YL RP + D LF + R MTRQ FW IK+Y + I ++ L+PH+L Sbjct: 188 YLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHI-AKSLTPHIL 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L++GADLR VQ LLGHSD+STTQIYTH+ RL+ ++ + HPRA Sbjct: 247 RHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 167/294 (56%), Positives = 204/294 (69%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERLE 64 A+I++F D LWLE LA+N+L AYRRDL + WL RG TL A +DD+ A R E Sbjct: 18 AQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARHE 77 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 KATSS R L+ ++R +Q R+ DDP + S K P R+PK LSEAQVE LL A Sbjct: 78 VT-KATSSNRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLAA 136 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P + PL LRD+ MLE++YA+GLRV+ELV L ++ + +GV+R+ GKG K RLVP GEE Sbjct: 137 PDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGEE 196 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A W+E YL+ RP +L+G D LF + R MTRQ FW IK +A A I++ LSPH Sbjct: 197 ARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINA-PLSPH 255 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRHAFATHLLNHGADLRVVQMLLGHSD+STTQIYTHVA ERL+ LHQ HHPR Sbjct: 256 TLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 167/292 (57%), Positives = 198/292 (67%), Gaps = 4/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 IE F DALWLE L++NTL+AYRRDL++ +WL G ++ L +A R +G Sbjct: 53 IELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDG- 111 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KATSS R LS RR + + RE DP+ L S K P R P LSEAQVE LL AP Sbjct: 112 -KATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPE 170 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + L LRD+ MLE++YA+GLRVSELV L ++ L GVVRV+GKG+KERLVP GE A Sbjct: 171 VGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAH 230 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+E YL RP LL + D LF + R + MTRQ FW+ IK +A+ A I + LSPH L Sbjct: 231 GWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRA-HLSPHTL 289 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RHAFATHLLNHGADLRVVQMLLGHSD+STTQIYTHVA ERLR LH HHPR Sbjct: 290 RHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG 341 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 152/295 (51%), Positives = 190/295 (64%), Gaps = 1/295 (0%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D +E+FLD L +E LA NTL AYRRDL + + R LTL Q D+ + E Sbjct: 3 DYRLMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGELA 62 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + ++ AR LSA+RRLF++L + R +DP+ + PK ++LP LSEA+ E LL Sbjct: 63 QKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALLY 122 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP L +RD AMLE++YATGLRVSELV LT+ + G VRVIGKGNKER+VP+GE Sbjct: 123 APDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPMGE 182 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A + Y R LL G + LF S R MTR FWH +K YA A I + LSP Sbjct: 183 AATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANI-MKPLSP 241 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H +RHAFATHLLNHGADLR VQM+LGH+D+STT+IYTHVA RL++LH Q HPR Sbjct: 242 HGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPRG 296 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 4/295 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---LTLATAQSDDLQALLAERL 63 I+ FL L +E+N ++ TL +Y DL +VE+L L +L+ +A Sbjct: 15 AIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYVAYLH 74 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 E Y+ T+ AR L+ +R F+Y RE + + +P+ L +P+ ++LP L+ Q+ LL+ Sbjct: 75 ECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGTLLE 134 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP +Q + LRD+A+LE LY+ GLRVSELV L +SD ++RV+GKG KER+ P+G Sbjct: 135 APPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIAPIGS 194 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A L +LE D LF ++ ++T ++ ++ Y + G+D +K SP Sbjct: 195 FAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLD-KKTSP 253 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH FATHLL+ GADLR VQ LLGH L+TTQIYTHV+T+RL + +++ HP A Sbjct: 254 HTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHA 308 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 121/306 (39%), Positives = 181/306 (59%), Gaps = 14/306 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH---RGLTLATAQSDDLQALLAER 62 A I QFL L +E+ AE T +YR DL+ + ++L R + DL+ ++ Sbjct: 3 AAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSAL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E GY TS AR L+++R +++ RE + +P+ L +P+ ++LP L+ ++ +LL Sbjct: 63 HEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLL 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +AP D P LRD+AMLE LY+ GLRVSELVG+ D+ L +GVVR+ GKG+KERL PLG Sbjct: 123 EAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLG 182 Query: 183 EEAVYWLETYLEHG----------RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 A+ ++ +L H R +F ++ +++T ++ ++ Y Sbjct: 183 SFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLK 242 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 L G+D +PH LRH FATHLL+ GAD+R VQ LLGH L TTQIYTHV+T L+ +++ Sbjct: 243 LTGLDLRT-TPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYE 301 Query: 293 QHHPRA 298 + HPRA Sbjct: 302 RAHPRA 307 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 360 bits (926), Expect = 2e-98, Method: Composition-based stats. Identities = 141/292 (48%), Positives = 193/292 (66%), Gaps = 3/292 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++ FL+ L +EK A NT++AY RDL+ + +L R + D+ LA+ G Sbjct: 4 YLDLFLNYLLVEKGAAANTVSAYSRDLNRYLLFLGER--EPDGIRPSDVTGFLAKLKGEG 61 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S AR LSA+R L ++L RE + E +P+A + +PK ++LP LS +VE LL +PL Sbjct: 62 IAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPL 121 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 ELRDKAMLE+LYATGLRVSELVGL +S+++L G + IGKG+KERLVP+GE A Sbjct: 122 DTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESAC 181 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + YL+ R LL + +LF S+ M+RQ FW+ IK A+ AG+ + +SPH L Sbjct: 182 HATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRT-SISPHTL 240 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR VQ++LGH+DLS+TQIYTHV ER+++LH HPR Sbjct: 241 RHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPRG 292 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 360 bits (926), Expect = 2e-98, Method: Composition-based stats. Identities = 115/299 (38%), Positives = 178/299 (59%), Gaps = 7/299 (2%) Query: 1 MKQDLAR-IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALL 59 M DL R IE +++ L E+N + NTL +Y RDL ++ + L ++++ + Sbjct: 1 MILDLKREIENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTN--KRNVRSYI 58 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + YK ++ R + ++R F+YL + +D + + +PK ++LP+ LS +V Sbjct: 59 QFIAQKNYKNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVM 118 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +LL +P +D + +RD+A++E LYATG+RVSELVG+ DI+ G +RV GK KER+V Sbjct: 119 KLLNSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIV 178 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 +GEE + L+ Y +H RP LL F + + +++ + IK Y ++ Sbjct: 179 IVGEETLKILQLYKDHVRPKLLKKP-EKAFFLNAKGGRISDRAIRMIIKKYTKD---FNK 234 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 K+SPH LRH FATHLL GADLR VQ LLGH +STTQIYTH+ +E++R+ + HPRA Sbjct: 235 KVSPHTLRHTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRA 293 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 126/295 (42%), Positives = 172/295 (58%), Gaps = 5/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A ++FL L E +LA+NT+ AY RD+ V W+ G A +L +A Sbjct: 34 AVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMD--GRRPADLTITELSDFVASLHGE 91 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S +R + A+R F+YL E D+P+ LA+ K QR+P LS +VE L A Sbjct: 92 GLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAV 151 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 RD+A+LEVLYATG R SE+ L + D++L + +R GKG+K+R+VP+G A Sbjct: 152 KKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRA 211 Query: 186 VYWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + ++ YLE R L N ID LF S+ + + R W +K YA AGI E +SP Sbjct: 212 IRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDE-ISP 270 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL GADLR VQ +LGH+ + TTQIYTHV RL+++H+ HPRA Sbjct: 271 HSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 360 bits (924), Expect = 4e-98, Method: Composition-based stats. Identities = 126/291 (43%), Positives = 176/291 (60%), Gaps = 2/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERLEGG 66 IE FL + LE+ LA NT+ +YRRDL L +G + + Sbjct: 22 IEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSLSSAS 81 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y S AR LSA+R L +L RE+FR DD +A L+ PK +R+P L+E ++ RLL AP Sbjct: 82 YTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLLAAPT 141 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRD+A+LE+ Y++GLRVSEL GL + + L G +RV GKG KER+VP+G +A+ Sbjct: 142 GGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKERVVPIGGKAI 201 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L TYL GRP + + LF ++ ++R W +K YA AG+ ++ + PH L Sbjct: 202 EALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGL-TKNVKPHGL 260 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FATHLL+ GADLR +Q +LGH+ +STTQIYT V ++RL + H + HPR Sbjct: 261 RHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPR 311 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 1/289 (0%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 + L E+ L EN++ +Y++DLS ++ + L + L G Sbjct: 14 DYTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSN 73 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S ++S++R+ F YL ++ + DP + +PK LP+ L+ ++E +L P I Sbjct: 74 NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 L LR++A+LE +YATG RVSE+ L ++D+ G++ IGKG K+R+VP+GE ++ ++ Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYI 193 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 Y + RP LL LF + +++RQ + +K A+ AGID + +SPH LRH+ Sbjct: 194 SKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGID-KDISPHTLRHS 252 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FAT+LL +GADLR+VQ LLGHSD+STTQIYTHV+ + +R+ + + HPRA Sbjct: 253 FATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRA 301 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 165/293 (56%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQALLAERLEG 65 Q+LD L +++ A+ T+ +Y+R + ++L + L+ L + E Sbjct: 10 YFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYLTKLYEK 69 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 T+ LSA+R F YL +E+ D+P + S K+ +R P L ++ LL + Sbjct: 70 NLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDSI 129 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L +R+KAM+E++YA+GLR SE+V L +S+I Q V+ + GKGNK+R VP + A Sbjct: 130 ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYVPFHDYA 189 Query: 186 VYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 WL Y++ R L+ + +F ++ +T + + + L ++K+ PH Sbjct: 190 GEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYD-STKKIHPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +RH+FATHLLN GAD+R VQ LLGH +LSTTQIYTH++ + L++++ + HPR Sbjct: 249 TIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPR 301 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 359 bits (923), Expect = 6e-98, Method: Composition-based stats. Identities = 149/291 (51%), Positives = 199/291 (68%), Gaps = 2/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE F+D LW + L++ TL+AYR DL + + L + L +A + + +LA+ + GY Sbjct: 9 IELFIDYLWTQVGLSDATLSAYRGDLQQVQKILAD--VPLKSATIEQMMQVLAQFHDRGY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS AR+ S++ R F Y +K R ++P L K+ + LP+ +SE+ VE LL AP + Sbjct: 67 SHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDV 126 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L LRD+AMLE+LYA GLRVSELVGLT+ I+L G V+++GKG+KERLVP GE A Sbjct: 127 QTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHE 186 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 WL+ Y++ RP LL D +F SQR ++RQ FW+R+K Y G+DS K+SPH LR Sbjct: 187 WLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLR 246 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HAFA+HLL HGADLR +QMLLGHSDLSTTQIYTH+A +RL+ L +HHPRA Sbjct: 247 HAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 359 bits (922), Expect = 7e-98, Method: Composition-based stats. Identities = 127/299 (42%), Positives = 179/299 (59%), Gaps = 8/299 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---LTLATAQSDDLQALLAERL 63 I+++L L E N A +T +AY DL+ ++E L L +D L+ + Sbjct: 43 WIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLY 102 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G + +S AR L+A R F+YL RE P L SPKL + LPK LSE++V LL Sbjct: 103 AVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLS 162 Query: 124 APLI--DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 A D+PL LR+ AM+E+ YA+GLRV+EL GL + + G VRV+GKG KER+VP+ Sbjct: 163 AAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPV 222 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSI--DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 GE+A+ + YL+ GRP L LF + R ++++ + + A A ++ Sbjct: 223 GEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALE-R 281 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH FATHLL+ GADLR VQ +LGH+ LSTTQIYTHV+ ERL++++ + HPRA Sbjct: 282 GISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 171/294 (58%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 ++ FL + +E+ + T++AY RD+ ++L +T D++ L Sbjct: 6 MQDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVLHREN 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y +S +R LS++R + +L K E +P A ++ K LP+ E ++E+ + + Sbjct: 66 YNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFINSID 125 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +Q L+ R+KA++EVLYATG+RVSEL LT+ + L ++ VIGKG+KER VP+G+ A Sbjct: 126 GNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIGDFAR 185 Query: 187 YWLETYLEHGRPWLLNGVSIDV--LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 LETYLE GR L+ + +F + +T + ++ +G+ + + PH Sbjct: 186 TALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLK-IHPH 244 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH FATHLLN+GAD+R VQ LLGH LS+TQIYTHV E L+Q +Q + PR+ Sbjct: 245 MLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRS 298 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 124/293 (42%), Positives = 175/293 (59%), Gaps = 2/293 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 I++++ L LE+ LA+N+L +Y DL+ ++L ++ L + + A L Sbjct: 4 LIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLEAK 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S AR L AVR +++L E +P + PK RLP+ LS+ QV LL+ P Sbjct: 64 GLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLEMP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 LR+ AMLE+LY GLRVSELVGL + L VR+ GKG++ER+VP G A Sbjct: 124 DRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGSHA 183 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +LE GRPW+L + LF ++ MTRQ FW +K YA+ AGI + +SPH Sbjct: 184 RQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIK-VSPHT 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GADLR VQ +LGH+D+++TQIYTHV+ + L +H+++HPR Sbjct: 243 LRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPRG 295 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 114/294 (38%), Positives = 169/294 (57%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+ F+ + +EKN + +T+ +Y D+ ++ + +++ L + Sbjct: 29 IQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKA 88 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y S AR +S++R LF +L RE+ + A PK +LP L E +++ L +A Sbjct: 89 YARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFE 148 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + PL+ RD+A+LE+LYATG+RV E L ++DI LR G V GKGNKER VP+G A Sbjct: 149 GNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFAC 208 Query: 187 YWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 L Y+E R LL + + LF + R +T ++ + A + + + PH Sbjct: 209 DALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQ-KHIRPH 267 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLLN+GADLRVVQ LLGH LSTTQ+YTHV +RLR++++ HHPRA Sbjct: 268 DLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 122/296 (41%), Positives = 178/296 (60%), Gaps = 5/296 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++EQF++ L +NL+ENTL +Y+ DL +W + L +L+ LA + Sbjct: 10 QVEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQ 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y A + R LSA+R ++++ REK DP+ L++P+ P+ LP ++++ V RLL++ Sbjct: 70 YSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCD 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + LRD+A LE LYATG R+SE+ L + + L+ G VR+ GKG+KER+VPL E A+ Sbjct: 130 VSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAI 189 Query: 187 YWLETYLEHGRPWLL----NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 WL+ YL RP LL G LF S R M+ + Y AG+DS LS Sbjct: 190 EWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDS-SLS 248 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH +RH +AT LL GADLR+VQ LLGH LSTTQ+YTH++ +RL++ + HPR+ Sbjct: 249 PHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRS 304 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 157/305 (51%), Positives = 200/305 (65%), Gaps = 7/305 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + +D I LDALW++ L+ +TLN+YRRDL + W + R LAT L L Sbjct: 20 LPEDATTIAHCLDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLT 79 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 R + Y S+ARL S +R F Y +R D+PS LA P LP LPK L+E+Q+E Sbjct: 80 WRTQQHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEA 139 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP I+ P LR++AMLE++YA GLRVSELV L ++ ++ RQGV+R+ GKG KERLVP Sbjct: 140 LLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVP 199 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDV-------LFPSQRAQQMTRQTFWHRIKHYAVL 233 LGEE+ +WL+ YLE RP L I LF + ++++RQ FW IKHYA L Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 GI K+SPHVLRH+FATHLLNHGADLR +QMLLGH +STTQIYT +A + L+QLH Q Sbjct: 260 VGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQ 319 Query: 294 HHPRA 298 HHPR Sbjct: 320 HHPRG 324 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 114/301 (37%), Positives = 178/301 (59%), Gaps = 12/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG- 66 + ++D L +EKN + NTL+ Y+RDL+ V WL L + + D++ +A+ G Sbjct: 28 VAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDLNIDSVDEPDIEQFIADLRRGDS 87 Query: 67 ------YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 A+S+AR AVR L ++ + E D +A + + Q LP L+ QV R Sbjct: 88 TLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQVNR 147 Query: 121 LLQAPLID---QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 L++A ++ P+ LRD+A++E+LY TG+R+SE + L + I VRV+GKG KER Sbjct: 148 LIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGKGRKER 207 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 LVP+G A++ ++ +L GRP ++ S LF + R ++ RQ+ W + A G+ Sbjct: 208 LVPIGAPALHAIDAWLVRGRPSMVK-RSDKALFLNARGNRLGRQSVWKFLHAAAERCGL- 265 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + + PH LRH++ATHLL GAD+R VQ LLGH+ ++TTQIYT V+ + LR+++ HPR Sbjct: 266 GDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPR 325 Query: 298 A 298 A Sbjct: 326 A 326 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 114/295 (38%), Positives = 169/295 (57%), Gaps = 6/295 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEGG 66 E F L +EK+ + T+ Y D+ E++ R D+++ LA+ + Sbjct: 18 EDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRD 77 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + AR +S++R ++YL RE + +P + +PKL ++LP L E ++ LL+ P Sbjct: 78 LSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPD 137 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 L RD+A+LE LY+TG RVSELVGLT++ + L ++GKG KERLVPLG V Sbjct: 138 CTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCV 197 Query: 187 YWLETYLEHGRPWLLNGVSIDV---LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +E YL H R L+ +F + R + ++ ++ + Y + + + +SP Sbjct: 198 AAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQ-KHVSP 256 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H +RH FATHLL+HGADLR VQ LLGH LSTTQIYTHV ERL ++++HHPRA Sbjct: 257 HTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 118/292 (40%), Positives = 176/292 (60%), Gaps = 4/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLAT-AQSDDLQALLAERLEGG 66 I FL L E+ L+ +TL AY+RDL+ W GL + D++ A R G Sbjct: 8 IRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFAAARHRQG 67 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S R LS++R LF+YL RE +P+ +A+P+ P+RLP LS + RLL+ Sbjct: 68 LAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARLLEGSP 127 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL LRD+A+ E++Y++GLR++E VGL + + L +G+V V+GKG K R VP+G +A Sbjct: 128 EDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRVPVGGKAR 187 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ +L RP L G +F SQR +++ ++ R+ A L+G+ + PH+L Sbjct: 188 EALQAWLA-VRPALA-GADEPAVFVSQRGGRLSARSVQARLARLATLSGV-GRPVHPHML 244 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA+HLL DLR VQ LLGH+D++TTQ+YTH+ + L +++ Q HPRA Sbjct: 245 RHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRA 296 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 355 bits (913), Expect = 8e-97, Method: Composition-based stats. Identities = 135/303 (44%), Positives = 190/303 (62%), Gaps = 6/303 (1%) Query: 1 MKQDLAR---IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA-TAQSDDLQ 56 M +D A +E +L L +E+NL+ NTL AY DL +++ L G+ A L Sbjct: 1 MARDEALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALL 60 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 L E G A S AR AVR LF++L E+ E DP+ +A PK +LP+ LS Sbjct: 61 GFLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSRE 120 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 +V RL+ AP +D PL LRD A+LE +YATG RVSE L +S + L QG+V + GKG+K+ Sbjct: 121 EVVRLIAAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQ 180 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAG 235 R+VPLG+ A+ L +LE GRP L+ + +F ++R +++RQ + R++ +AV AG Sbjct: 181 RMVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAG 240 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 I + +SPH LRH+FATHL+ GADLR VQ LLGH+D+STTQ+YTH++ +R + HH Sbjct: 241 I-TRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHH 299 Query: 296 PRA 298 PRA Sbjct: 300 PRA 302 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 112/299 (37%), Positives = 186/299 (62%), Gaps = 6/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 ++QD+ +F D L EKN + +T+ +Y+RDL + +L +G+ + + L + + Sbjct: 11 IQQDM---RRFADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYI 67 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + + G+ +S +R ++++R F +L + K +DPS +L +P + ++ P+ L+ + Sbjct: 68 LQMEKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETV 127 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +LL P +D +RDKAMLE+LYATG+RVSEL+ + ++D+++ G V +KER++ Sbjct: 128 QLLNQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCRD-SDKERVI 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P G EA L+ YLE R LL G + LF + + M+RQ FW IK Y+ AGI ++ Sbjct: 187 PFGTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGI-TK 245 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+F HL+ +GADLR VQ ++GHSD+STTQIY + R+R+++ + HPR Sbjct: 246 DITPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPRG 304 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 170/302 (56%), Gaps = 5/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M + F++ L +EKN + T++ Y + V +++ +G+ D + L Sbjct: 1 MTNKQRLVHLFIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYL 60 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 E E G + ++ +SA+R +++L RE+ +++P ++ PK +R+P L E +++ Sbjct: 61 TEAYEKGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELK 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 L + PL R++A+LE+LYATG+RVSEL L SD+ L V V GKG+K+R V Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 180 PLGEEAVYWLETYLEHGRPWLL---NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 P G A L TYLE GR L + +F +QR +T + + A Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKAS- 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH+LRH FATHLLN GADLR VQ LLGHS+LS+TQ+YTHV+ + LR+ + HHP Sbjct: 240 GTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHP 299 Query: 297 RA 298 RA Sbjct: 300 RA 301 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 122/291 (41%), Positives = 178/291 (61%), Gaps = 5/291 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 F D L E +LA NT+ AYRRDL WL R + T + +L +A + Sbjct: 4 AFTDYLQSECHLAANTVAAYRRDLVRFERWLGAR--EIRTLRVGELSDYVAWLYKEELAP 61 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S AR + +++ F+YL E +D+ L S K+ +R+P ++ +++ LL AP + Sbjct: 62 ASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWSED 121 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 P RD+A+LEVLYATG R SE+ GL M D+ L +G V+ GKG+K+R+ PL +++ + Sbjct: 122 PYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSARVV 181 Query: 190 ETYLEHGRPWLLNGVSIDV--LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 +TYL+ RP L D LF S+ ++++R W +K YA AGID + +SPH LR Sbjct: 182 KTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPD-VSPHSLR 240 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL GADLR VQ ++GH+ ++TTQIYTHV RL+++H Q+HPRA Sbjct: 241 HSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 3/294 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 I+QF+ + +EKN ++ T++ YR+D+ ++ G+ + + D++ ++E ++ Sbjct: 8 LIDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDK 67 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y S AR LSA+R ++L E ++P H PK RLP L E ++E L A Sbjct: 68 KYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLAL 127 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 ++PLE RDKA++E+LYATG+RVSE L + VRV GKG KER VP+G+ A Sbjct: 128 PANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMA 187 Query: 186 VYWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 V +E+Y+ RP LL LF + R ++ ++ ++ A + +K+SPH Sbjct: 188 VSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQ-KKISPH 246 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +RH+FATHLLN GADLR VQ LLGH L TTQ+YTHV+ ERL +++ HPRA Sbjct: 247 AIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 176/293 (60%), Gaps = 4/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 ++ ++ L +E+NLA N+L +Y RDL ++L + T+ +++ + + Sbjct: 5 LQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSNR 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A S R +S++R +L E +D+P+ L +PK+P++LP L+ +++++L Sbjct: 65 GLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGII 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + P+ RD A+ E++Y+ GLRV+EL SDI ++RV GKG+K+R VP+G A Sbjct: 125 PENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPIA 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 L+ YL H R L + +F S+ +++TR W +K + A + +++SPH Sbjct: 185 RENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEV-KKEVSPH 243 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LRH+FATHLL GADLR VQ +LGH+D++TTQ+YTH+ E L+++H+ +HPR Sbjct: 244 TLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 123/305 (40%), Positives = 172/305 (56%), Gaps = 15/305 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 + +L + +E+ LA NTL AYRRDL+ +L G + + +G Sbjct: 57 VTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPGDITRHHVTGFVRALSDGS 116 Query: 67 -----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 S+AR + AVR L ++ E DP++ + P +RLPK ++ +V R+ Sbjct: 117 DGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAITVDEVTRI 176 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG-------VVRVIGKGN 174 L+A D LRD+A+LE LY+TG R+SE VGL + DISL +VR+ GKG+ Sbjct: 177 LEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAIVRLFGKGS 236 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KERLVPLG LE YL GRP L G LF + R +++RQ+ W +K A Sbjct: 237 KERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKVAAEK 296 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 A I + +SPH LRH+FATHLL GAD+RVVQ LLGH+ ++TTQ+YT V + LR+++ Sbjct: 297 ANI-TRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAA 355 Query: 294 HHPRA 298 HPRA Sbjct: 356 AHPRA 360 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 162/301 (53%), Gaps = 11/301 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL---------TLATAQSDDLQA 57 I+ FL++L E+ + T AY +DL ++ GL + + ++ Sbjct: 14 WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 L + K ++ AR LS++R +++L + +P+ + +PK + + L+ + Sbjct: 74 YLGFLHKKNEK-STMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDE 132 Query: 118 VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 LL + L D RD+AM E LY+TG+RVSEL GL M ++ +RV+GKG+KER Sbjct: 133 AFALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKER 192 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 +VP+G +A+ ++ Y + + +F ++ ++T ++ ++ G++ Sbjct: 193 IVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLN 252 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LSPH LRH FATH+L++GADLR VQ LLGH+ +STT YTHV+ +RL + + HPR Sbjct: 253 -RPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPR 311 Query: 298 A 298 Sbjct: 312 G 312 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 124/331 (37%), Positives = 172/331 (51%), Gaps = 42/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT--------------------- 46 + FL +L +EK+ +++TL +YR DL+ WL G T Sbjct: 17 VAGFLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDFAAQQ 76 Query: 47 -----------LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 95 L +++ LA + + AR LS +R ++YL R + Sbjct: 77 EEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTN 136 Query: 96 PSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGL 155 P A + +PKL +RLP L E ++ LL P PL LRD+A+LE+LYATGLRV ELV L Sbjct: 137 PVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVAL 196 Query: 156 TMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLN---------GVSI 206 DI +G V V GKG KER VP+G EA+ L YL G P L + Sbjct: 197 NRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAK 256 Query: 207 DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQM 266 LF ++ +++ ++ + Y + S ++SPH +RH FATH+LNHGADLR VQ Sbjct: 257 QPLFLNKLGGRLSDRSVRRLLDRYVSQLAL-SRQISPHKIRHTFATHMLNHGADLRAVQE 315 Query: 267 LLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +LGH+ LSTTQIYTHV T+RLR + + HPR Sbjct: 316 MLGHASLSTTQIYTHVTTQRLRTEYLRAHPR 346 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 113/289 (39%), Positives = 171/289 (59%), Gaps = 3/289 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 ++LD L E+ L+ NT+ AY++D+ + + G + + + + + G + Sbjct: 12 KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRKRGDSS 71 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 + AR LS++R F + E +P+ + PKLP LP LS+ ++ RLL P I Sbjct: 72 RTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDITN 131 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 L RDK +LE+LYA+G+RVSEL+G+ + D +G+++V GKG KER +PL A+ L Sbjct: 132 KLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKLL 191 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 Y++ RP LF ++ + +TRQ W IK YA+LA I+ + +SPH RH Sbjct: 192 IHYVQKIRPMFT--PIEKFLFLNRSGKGLTRQAIWKIIKRYALLASIN-KSISPHTFRHT 248 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR VQ+LLGH D+S T++YTHV ++RL+ +H HPR+ Sbjct: 249 FATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRS 297 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 183/295 (62%), Gaps = 4/295 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH--HRGLTLATAQSDDLQALLAERLE 64 I QF D L LE++L+ N++ AY D+ +++L + + +Q L E Sbjct: 6 LIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITE 65 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G A S AR+LS ++ F++L E+ R++DPS+ + SPKL ++LP LS ++E++L A Sbjct: 66 LGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + P +R++AMLE LY+ GLRVSEL L +S++ G V+V+GKGNKERLVP+G + Sbjct: 126 IDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRD 185 Query: 185 AVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A ++ Y R L + + + +F ++R +++R + IK+ AV G+ + +SP Sbjct: 186 ARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGL-KKTVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H RH+FATHL+ GADLR VQ +LGH ++TT+IYTH+ + L+Q+ + HPR+ Sbjct: 245 HTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 108/298 (36%), Positives = 176/298 (59%), Gaps = 6/298 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 K++ +I+ F L E+N + +TL AY+RD+S +L + L + A D++ L E Sbjct: 21 KENNEKIDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEE 80 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHL-ASPKLPQRLPKDLSEAQVER 120 + AR L+ + +++L K +++ + AS K +++P L+E +++ Sbjct: 81 LGNKKLSRATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQM 140 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL P L+ RD+AM+E+ Y+ GLR+ ELV L + +I VV V GK NKER+VP Sbjct: 141 LLNLPD----LKPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVP 196 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G+ ++ ++ Y+ R L +F S RA+++ ++T + Y V AG ++K Sbjct: 197 VGDICLHAIKDYINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGF-TKK 255 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH FATH+L+ G DLR VQ +LGH +LS+TQIYTHV E L++++++ HPRA Sbjct: 256 VSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRA 313 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 350 bits (899), Expect = 3e-95, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 172/299 (57%), Gaps = 6/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQALL 59 M++D A F+ L ++ L+E T +Y RDL + +L + ++ + Sbjct: 1 MERDAA---SFISFLAGQRGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYF 57 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A + G + R+ +R F+YL +E+ E DP L PK+ ++ P+ L+ + E Sbjct: 58 AYLKDLGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETE 117 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL+AP D PL LRDKAMLE+LYATG+RVSEL+ L D++L +R G+ KER++ Sbjct: 118 RLLEAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERIL 177 Query: 180 PLGEEAVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P G WL+ YL GR L L+ LFP++R +++RQ FW +K Y AGI S Sbjct: 178 PFGGVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITS 237 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + ++PH LRH+FA HLL GAD+R VQ LLGHSD ST Q+Y + L+ ++ HPR Sbjct: 238 D-ITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPR 295 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 4/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA-TAQSDDLQALLAERL 63 L+ + FL L +EK ++ T+ +Y DL V +L G+ A D L + +A+ Sbjct: 18 LSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLS 77 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 GY A S R +SA++ +L R+ DP+ L P +P RLP LS QV LL Sbjct: 78 GRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLD 137 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + PL +R+ LE+LY GLR SEL GL D L +G++R++GKG++ER+VP+G Sbjct: 138 QEFREGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGG 197 Query: 184 EAVYWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 A L +YLE RP L + + + R +++RQ+ ++ + GI + L Sbjct: 198 SAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGI--KDLH 255 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLL GADLR +Q +LGHSD+STTQIYTHV +R+ + HPRA Sbjct: 256 PHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRA 311 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 350 bits (898), Expect = 4e-95, Method: Composition-based stats. Identities = 132/297 (44%), Positives = 183/297 (61%), Gaps = 4/297 (1%) Query: 4 DLA-RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAE 61 DLA ++ +LD L +E+ LA TL AY DL+ +V G+T + + L Sbjct: 29 DLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVA 88 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G A+S+AR LSAVR ++L RE+ E DP A + P++ +RLPK LS ++ L Sbjct: 89 LGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALL 148 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 ++AP LRD+AML V+YA GLRVSE+V L ++DI R+G+V +GKG K RLVPL Sbjct: 149 IEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPL 208 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 GE A+ ++ YLE R + VLF S R +TRQ W + YA GI ++ Sbjct: 209 GEPALAAIDAYLEL-RATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGI-AKPS 266 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH+FATHLL GADLR VQ LLGH+++ TT+IYTH+A + +R +++ HPRA Sbjct: 267 SPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 116/294 (39%), Positives = 177/294 (60%), Gaps = 8/294 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 Q++ L +E+ A NT+ +YRRDL+ ++++ R +L + + D++A L G Sbjct: 71 RQWITYLTVERGKARNTIASYRRDLASYLDFVGER--SLDSIAATDIEAFLQSLGRHGLA 128 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 TS R+LS +R + E DD + + P +PQ LP LS ++ L+++ D Sbjct: 129 VTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGD 188 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDI---SLRQGVVRVIGKGNKERLVPLGEEA 185 + LR+KA+LE+LY TG R+SE++ L + DI G++ + GKG+K+R+VP+G A Sbjct: 189 SAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHA 248 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQ-MTRQTFWHRIKHYAVLAGIDSEKLSPH 244 ++ YL GRP L G S LF + R + M+RQ+ W +K A AGI ++ +SPH Sbjct: 249 RQAVDAYLVRGRPQLNKGKSA-ALFLNVRGGKAMSRQSAWQVVKQAATEAGI-TKDISPH 306 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GAD+R VQ LLGH+ ++TTQIYTH+ + LR + + HPRA Sbjct: 307 TLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 103/289 (35%), Positives = 158/289 (54%), Gaps = 2/289 (0%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 F + L E+ L++NT+ AY D+ + + D + + + G Sbjct: 5 DFKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSP 64 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S R AV+ ++YL ++DP L SPKL Q++P+ L++ ++ RLL P Sbjct: 65 KSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPP-KT 123 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 E+R +LE+ YA GLRVSELV L + ++L+ V GKG K+R +P+ + AV L Sbjct: 124 FAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVL 183 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 E YL +L S +F ++ ++++R + W + LAGI+ L PH+ RH Sbjct: 184 EIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIE-RSLHPHLFRHT 242 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR +Q +LGH+DL TTQIYTH+ + L++ H++ HPR Sbjct: 243 FATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPRG 291 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 128/312 (41%), Positives = 185/312 (59%), Gaps = 20/312 (6%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQAL- 58 M + ++ +FL+ L +++ + +T+ AYR DL+ ++ RG T++T D L Sbjct: 1 MDELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRL 60 Query: 59 --------LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 110 L ++ GY +S R L+AVR F +L R + E +P+ +A+PK QRLP Sbjct: 61 YLASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLP 120 Query: 111 KDLSEAQVERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 L+ Q L++AP +QP RD A+LE+LY++GLRVSEL GL ++D+ G+V Sbjct: 121 FHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMV 180 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 RV GKG KER+VP+G A+ LE YL GR L + LF R ++ R+T + Sbjct: 181 RVQGKGGKERIVPVGSAALEALEQYLA-GRGQLADDA---PLFLGCRGARINRRTVAQLV 236 Query: 228 KHYAVLAGIDS-EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 K +A +GI + +SPH LRH FATH+L GADLR +Q LLGHS LSTTQ YTHV +R Sbjct: 237 KRWA--SGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDR 294 Query: 287 LRQLHQQHHPRA 298 L +++ + HPRA Sbjct: 295 LLEVYDKAHPRA 306 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 117/296 (39%), Positives = 178/296 (60%), Gaps = 7/296 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 E+FL + +E+ + T+ AYRRDL +L + + + QS ++ +A G Sbjct: 8 ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKA 67 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 A S AR+ +AVR + +YL E+ R D+P++ + K+P +PK LSE +V R+L + Sbjct: 68 AKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGV 127 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 LRD+A+LE LYATG R+SE GL++SD+ + +VR+ GKG+KER+VP G A Sbjct: 128 DSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAA 187 Query: 189 LETYLEHG------RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 LE +L G D +F R +++RQ W ++ +A +A + +++S Sbjct: 188 LEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEV-GDEVS 246 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+ ATH+L HGADLR+VQ LLGH+ +STTQ+YT V E L ++++ HPRA Sbjct: 247 PHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 348 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 163/299 (54%), Gaps = 9/299 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 +E+FL + + +E+T AY+RD+ + ++ + + + +A + Sbjct: 4 LLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFLRDK 63 Query: 66 G------YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 G K T+ AR LS++R + YL ++P + +PK+ +R+P+ L ++E Sbjct: 64 GGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDEIE 123 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 L++ ++ LRD+ M E++YA GLRVSE V L D+ ++ + GKG+KERLV Sbjct: 124 IFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKERLV 183 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P + A L +Y++ R LF +QR +++T + + + + Sbjct: 184 PFYDLAKELLVSYIKDVRDVWATSDET-ALFVNQRGKKLTTRGVQYLMNKAVEKCDL-HV 241 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+ RH+FATHLL++GADLR VQ LLGHS LSTTQIY HV+ ERL+ ++ HPRA Sbjct: 242 HVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRA 300 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 348 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 112/295 (37%), Positives = 175/295 (59%), Gaps = 4/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAERL 63 A ++ F L LE++L+ N++ AY RD+ +V++L + DLQ+ + Sbjct: 22 AYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWIA 81 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ATS AR++S ++ ++YL E DP+ L +PK ++LP LS ++E+++ Sbjct: 82 TLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIG 141 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P R++A+LE +Y+ GLRVSE+ L +S + G +RV+GKG+KERLVP+G Sbjct: 142 QIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIGS 201 Query: 184 EAVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 +AV ++ Y + R + + D+LF ++R +TR + IK AGID +++S Sbjct: 202 DAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGID-KQVS 260 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH RH+FATHL+ GADLR VQ +LGH ++TT+IYTH+ E LR Q+ HPR Sbjct: 261 PHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 174/299 (58%), Gaps = 8/299 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDL---QALLAER 62 +E FL L E+ + T++AYR D+ ++ R A + D+ + L Sbjct: 8 EALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYLGWL 67 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G + +S R L+A+R +++L R + P A L+ P+ +RLP LS A++E+LL Sbjct: 68 NQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLL 127 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P PL LRD+A+LE LYA+G+RV+ELVG+ D+ L G RV+GKG +ER+VPLG Sbjct: 128 SIPAT-TPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLG 186 Query: 183 EEAVYWLETYLEHGRPWLLN---GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 AV LE YL RP L LF + ++T + R+ HY A + Sbjct: 187 RYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAAL-RR 245 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH +RH FATHLL GADLRVVQ LLGH L+TTQIYTH++ +LR++++Q HPRA Sbjct: 246 GVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRA 304 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 112/290 (38%), Positives = 173/290 (59%), Gaps = 1/290 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ + L LE+N + NTL AY+ DL ++ + + ++ + +DLQ + E Sbjct: 12 VKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQHFAGQLHEHDI 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS AR+LS VR +++L + + E DP+ L SP+L + LP+ LS +V+ + + + Sbjct: 72 GPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSIDL 131 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 +P R+KA++EVL++ GLRVSELV L +S++ L +G +RV GKGNKERLVP+ +A+ Sbjct: 132 SKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPISPKAIK 191 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L + + D +F ++R +TR +K A AGI + +SPH LR Sbjct: 192 ELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQ-KTISPHTLR 250 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FAT LL GADLR +Q++LGH + TT+IYTH+ T LR+ HHPR Sbjct: 251 HSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPR 300 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 149/296 (50%), Positives = 187/296 (63%), Gaps = 8/296 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A I +F A+ L + L+ T NAY RDL + L D+ L Sbjct: 22 AYITEFRQAM-LARGLSTRTRNAYVRDLKLCET---THSKALTLWSDMDVMQCLTALDRQ 77 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G + AR+LS++R+ + ++ + RED+P + +PK+ + LPKDLSE VE LL AP Sbjct: 78 GKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAP 137 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L LRDKAMLEVLYA GLRVSEL+ L++ ++L G +++ GKGNK RLVPLGE A Sbjct: 138 DTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYA 197 Query: 186 VYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 L+ YL H R L L + +F + + MTRQ FW+ IK YA AGI S+ LS Sbjct: 198 SDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSD-LS 256 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRHAFATHLLNHGADLR VQ+LLGHSDLSTTQIYTHVAT RL+QLH+ HHPR Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPRG 312 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 128/331 (38%), Positives = 177/331 (53%), Gaps = 42/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG----------------------- 44 I+ FL L +EK + +T+ +Y+RDL V R Sbjct: 9 IDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPLP 68 Query: 45 -------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPS 97 L +A + ++A + K++S AR LSA+R F++L + DDP+ Sbjct: 69 AEDPAAELDVAQLDATRVRAFVYSLHGRN-KSSSVARKLSALRSFFRFLRKNGIINDDPA 127 Query: 98 AHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTM 157 A +A+PK LP LS +V LL+ P RD+A+LE+LYATGLRVSEL GL + Sbjct: 128 AAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLDL 187 Query: 158 SDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL----------LNGVSID 207 + + L G+VRV+GKGNKERLVP+G AV +E YL + L D Sbjct: 188 AQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARGAD 247 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 L + R ++T ++ +K YA AGI + ++SPH LRH+FATHLL GADLRVVQ L Sbjct: 248 PLLVNSRGGRLTSRSIERLVKMYAERAGIAA-RVSPHALRHSFATHLLEMGADLRVVQEL 306 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGH+ LSTTQ YTH+ + L ++ Q HP A Sbjct: 307 LGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 174/305 (57%), Gaps = 13/305 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDD--------LQA 57 I++F + LE+NL+ +T Y DL+ +L +++ ++A Sbjct: 3 ELIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVRA 62 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 L K + AR L+++R F+YL++++ + +P +++P+ + +P LS + Sbjct: 63 FLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVDE 122 Query: 118 VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 + LL P + LRD+A+LE+ Y++G+RVSEL G+ D+ QG++R+ GKG KER Sbjct: 123 IFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKKER 182 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSID----VLFPSQRAQQMTRQTFWHRIKHYAVL 233 +VP+G+ A ++ Y+ +G ++ LF ++R +++ ++ + Y + Sbjct: 183 IVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVSM 242 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 +G+ +++SPH LRH+FATHL++ GADLR +Q LLGH LSTTQ YT V+ RL ++ + Sbjct: 243 SGLQ-KQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDR 301 Query: 294 HHPRA 298 HP+A Sbjct: 302 AHPKA 306 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 113/291 (38%), Positives = 169/291 (58%), Gaps = 5/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+ FL + EK L+ NT+ AY RD+ + + + + + L A L Sbjct: 16 IKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEPEHLIAFLGSLKSAD 75 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y ++ +R L +++ F +L RE E +PS L SPKL Q LP L +V+ L+ P Sbjct: 76 YATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQPD 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +RD+A+ E+LY +GLRVSE+ LT+ I +RV GKG+KER+VP+G +A+ Sbjct: 136 NKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSID--DQYIRVYGKGSKERIVPIGSQAL 193 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL R W + LF + R + M R + W IK YA AGI ++ +SPH L Sbjct: 194 MAVDQYLSLYR-WQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAGI-TKTISPHTL 251 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FATHLLN+GADLRV+Q LLGH+++S+T YT V++ L++ + HP+ Sbjct: 252 RHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPK 302 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 3/290 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++++L+ L +E+ LAENTL AY DL + +L RG LA L + + G Sbjct: 28 MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGM 87 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR L+ +R F + E E DP+ L +PKL + LP L+ ++ +L P + Sbjct: 88 AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDL 147 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+ MLE++YA GLRVSEL L D + GVVRV GKG KER+VP+ + Sbjct: 148 SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCA 207 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 + YL RP +F ++ + ++RQ W +K + AGI + +SPH R Sbjct: 208 LVTAYLRDWRPAF--SPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGI-HKDISPHTFR 264 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FATHLL GADLR VQ+LLGH+D+S T+IYTHV +RLR++H HHPR Sbjct: 265 HSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPR 314 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 116/293 (39%), Positives = 173/293 (59%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERLEGG 66 +E FL L E +A NT++AYR D+ ++W + + L+ L L Sbjct: 25 LEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRK 84 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 AT+ +R L ++ F+YL E + + L SPKL + LPK LS +V +LL AP Sbjct: 85 LAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPC 144 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRD+A+L ++YATG RV+E+V L ++ + L +G R +GKGNKER+V L AV Sbjct: 145 RQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAV 204 Query: 187 YWLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +E YL H RP L + + LF ++ +Q++R W+ +K A G S+++SPH Sbjct: 205 AAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVG-CSKEVSPHT 263 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATH++ GA++R +Q LLGH+++ TTQIYTHV RL+ +HQ +HPR Sbjct: 264 LRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPRG 316 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 129/297 (43%), Positives = 178/297 (59%), Gaps = 6/297 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLE 64 ++E FL L E+NL+ NT+ AYR DL E+LH R L DD+ A L + E Sbjct: 3 EQVEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRE 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y +++ AR ++AV+ F +L + DP+ + SPK+ + LP+ L+ QV+ LL+ Sbjct: 63 RRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLEL 122 Query: 125 PLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 PL P +RDKAMLE+LYATG+RVSELV L ++D+ L + VR IGK + R++P+ Sbjct: 123 PLRSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPING 182 Query: 184 EAVYWLETYLEHGRPWLLNGV--SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A LE Y + R L G S + LF + R +++TRQ FW +K YA G+ L Sbjct: 183 SAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLS--DL 240 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PHVLRH+FA H+LN G DLR VQ LLGH+ +STTQIYTH+ E H PRA Sbjct: 241 TPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRA 297 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 113/302 (37%), Positives = 170/302 (56%), Gaps = 6/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALL 59 M +E+F L EK + +T+ Y DL +L R L+L + ++ L Sbjct: 1 MTSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYL 60 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + S AR L++++ ++YL R+K P+ + SPKLP+ LPK L +V Sbjct: 61 GTL-STDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVF 119 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P + L LRD+A+LE+LY GLR+SEL GL + DI +VRV+GKG+KERLV Sbjct: 120 AILDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLL---NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 P+ +++ LE YL L + + +F + R ++T ++ + Y + + Sbjct: 180 PVNAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCAL 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + K+SPH +RH+FATHLL GAD+R +Q LLGHS LSTTQ YT V E+L+Q++ HP Sbjct: 240 -TRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHP 298 Query: 297 RA 298 RA Sbjct: 299 RA 300 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 177/312 (56%), Gaps = 21/312 (6%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--------------------LT 46 IE F+ L E+ L+EN + R L WL R + Sbjct: 4 AIEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVA 63 Query: 47 LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLP 106 + LA + G A S ++ A++ F++L+ K E D + L P+ Sbjct: 64 PGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTE 123 Query: 107 QRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 + LP+ ++E QV+RLL+ ID P LRD+A+LE+LYA+GLRVSELV + ++ L + Sbjct: 124 RYLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARI 183 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 +RV GKGNK RLVP+G++A + YLE RP ++ + +F S R ++T W Sbjct: 184 IRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQI 243 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K A AG+D + PH+LRH+FATHLL++GADLR++Q +LGH+D+STTQIYTHV +R Sbjct: 244 VKACAKNAGLDI-NVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQR 302 Query: 287 LRQLHQQHHPRA 298 L+ +H + HPRA Sbjct: 303 LKAVHHRFHPRA 314 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 134/299 (44%), Positives = 182/299 (60%), Gaps = 2/299 (0%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M ++ FL + +EK LAEN++ AY RDL +E L G+ ++QA L Sbjct: 17 MSALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHL 76 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 AE + G S AR LSA+R L + L E+ DPS + SP+ +RLP LS +V+ Sbjct: 77 AELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVD 136 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL AP + +RD+AMLE+LYATGLRVSELV L ++D++L V+ GKG+KER+V Sbjct: 137 RLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G A ++ YL R LL+G LF + R +MTRQ F + A A Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRA-GIRR 255 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++SPH LRH+FATHLL GADLR VQ +LGH+D+STTQIYTHV +++L+ + HPRA Sbjct: 256 RISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 119/295 (40%), Positives = 179/295 (60%), Gaps = 5/295 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERLEGG 66 + F+D L E+ L+ NT AYR DL +WL RG + + + L + G Sbjct: 6 LNLFIDYLVTERGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDLG 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA-- 124 + + AR L AV+ L ++L E + D +A + SPKL + LP LSEA+V+ L+A Sbjct: 66 RETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAFP 125 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + +P E+R++A+LEVLY++GLRVSEL L ++ + ++RV+GKG+K R+VP+G+ Sbjct: 126 ASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGKV 185 Query: 185 AVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ L YL RP L +F S+ + + R+ W+ +K A AGI + + P Sbjct: 186 ALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGI-HKNIHP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FA+HLL HGADLRV+Q +LGH+D+STT+IYTH+ + RL +H + HPR Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPRG 299 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 114/295 (38%), Positives = 173/295 (58%), Gaps = 8/295 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERL 63 L+ +E FL L +E+ ++ +TL+AYRRDL+ ++ W +G +A S L+ + Sbjct: 28 LSAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEH 87 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S R LSA R + +L + P+A L +PK P++LP+ L + RL++ Sbjct: 88 RRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVE 147 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P D PL LRD+A+LE+ Y++GLR+SEL L D+ L G+V V+GKG K+RLVP+G Sbjct: 148 VP-TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGS 206 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 AV L + G + +FP + ++++ RIK AV G+ + + P Sbjct: 207 HAVAALRAWQRDS-----GGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGM-FKHVHP 260 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FA+H+L DLR VQ LLGHSD++TTQIYTH+ + L +++ HPRA Sbjct: 261 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRA 315 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 108/295 (36%), Positives = 170/295 (57%), Gaps = 6/295 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAER--LEG 65 ++FL L +E+ +E T AY D+ +L G L A+ ++ L+ Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALADHRS 67 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y S +R ++++R +QYL +E+ +++P +++ K RLP+ E +++ L + Sbjct: 68 SYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSV 127 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D PL+LR++A+LEVLY +G+R+SE L++SDI V+ + GKGNKER PLG A Sbjct: 128 AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFA 187 Query: 186 VYWLETYLEHGRPWLLNG--VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 L+ Y GR L+ D++F + + +T + + + +DS+ + P Sbjct: 188 QDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD-IHP 246 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH FATHLLN+GADLR VQ LLGH++LSTTQIY HV E L++ ++ HPRA Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 346 bits (889), Expect = 5e-94, Method: Composition-based stats. Identities = 123/293 (41%), Positives = 167/293 (56%), Gaps = 6/293 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 F++ L E +LA+N++ AY+RD++ WL R + DL LA E Sbjct: 25 RSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIP--KLTVRDLTDYLAFMREENLD 82 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 S AR + ++ +YL E +D+P+ L + K +P LS RLL AP Sbjct: 83 PKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLDAPQPY 142 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 PL RD+A+LE+LYATG R SE+ + + D+ + GKG+KERLVPLG+ A+ Sbjct: 143 DPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLGDPALAA 202 Query: 189 LETYLEHGRPWLLNGVS---IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +E YLEH RP L L S R Q++TRQ W +K YA+ G + +SPH Sbjct: 203 VEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPA-SMSPHT 261 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL+ GADLR VQ LLGH+ + TTQIYTHV RL+++H Q HPRA Sbjct: 262 LRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 147/297 (49%), Positives = 198/297 (66%), Gaps = 7/297 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M++DL I++ L+ LWL++ L+ NTL +YRRDL + L G TL A DL A Sbjct: 18 MEEDL--IDRLLETLWLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLA---A 72 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G + +S AR LSA +RL+ ++ RE R D+P+ L PK+ + +P ++E Q+ R Sbjct: 73 AVYVAGEERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISR 132 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP D P LRDKA+LE++YATGLRVSE V L+ ++ L +G + +GKGNK+R+VP Sbjct: 133 LLSAPDTDTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 192 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G E+VYW+E Y + RP LL G S D LF SQ+ ++RQ W +K YA AGI E Sbjct: 193 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGI--EH 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +SPH LRHAFATHL+ HG DLRVVQ +LGH+DL+TTQIYTHVA RL + ++HH R Sbjct: 251 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 345 bits (887), Expect = 8e-94, Method: Composition-based stats. Identities = 119/294 (40%), Positives = 184/294 (62%), Gaps = 9/294 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG-GY 67 E++L L LE+NL+ NTL++YRRD + WL R +T + D+++ +A +G G Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLGARSVT--ELNTGDIESFMASLAKGEGL 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 A++ AR+L+AVR ++L E E D + +A P +PK LS A+V +L++ Sbjct: 72 AASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPN 131 Query: 128 DQP---LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D +++RD+A+LE+LY+TG RVSEL+GL + D+ + ++ V GKG+KER+VP+G+ Sbjct: 132 DDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDP 191 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L+ YL RP N LF ++ +M RQ+ ++ + + AG+ +SPH Sbjct: 192 ALDALQHYLVRVRPAF-NKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAG--VSPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GAD+RVVQ LLGHS++ TTQIYT V+ + LR+ + HPR+ Sbjct: 249 SFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPRS 302 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 345 bits (887), Expect = 8e-94, Method: Composition-based stats. Identities = 136/324 (41%), Positives = 186/324 (57%), Gaps = 32/324 (9%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH---------------------- 42 L ++ FL L E+ LA NTL AY+ DL +L Sbjct: 35 LPLLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRG 94 Query: 43 ------RGLT-LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 95 R +T + + L+A LA + S++R +SA+R F++L E+ D Sbjct: 95 AGLASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHD 154 Query: 96 PSAHLASPKLPQRLPKDLSEAQVERLLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVG 154 P+A L PK+ + LPK LS A+VE+LL P L LR+ AML +LYATG+RVSELV Sbjct: 155 PAALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVK 214 Query: 155 LTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR 214 L ++ ++ + G +R++GKG+KERLVP GE A + Y+ RP LL D LF + R Sbjct: 215 LPVAAVN-QAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGR 273 Query: 215 AQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLS 274 MTR FW ++ A GI E +SPHVLRH+FATHLL HGADLR VQ++LGH+D++ Sbjct: 274 GTAMTRLRFWQIVRKSARERGIARE-ISPHVLRHSFATHLLEHGADLRAVQVMLGHADIA 332 Query: 275 TTQIYTHVATERLRQLHQQHHPRA 298 TTQIYTHV T RL+ +H++ HPR Sbjct: 333 TTQIYTHVDTNRLKAIHRKFHPRG 356 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 345 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 116/295 (39%), Positives = 174/295 (58%), Gaps = 5/295 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 L + FL L E+ L+ +T+N Y+RDL L + T D+++L A Sbjct: 9 LQTVNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGSQ--PWDTLTVHDMRSLAASLHR 66 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + R+LS +R F+YL RE D+P+ + +PK +RLPK L QV LL A Sbjct: 67 QGKSGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDA 126 Query: 125 PLIDQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + PL LRD+A++E+LYA GLR++EL+ L + I L + + V GKGNK R +P+G+ Sbjct: 127 GTSNSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGK 186 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ + +L+ RP L+ + LF S+ ++++ + R+K +A+ G+D+ L P Sbjct: 187 PALTAVRRWLQ-VRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDA-HLHP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL DLR VQ LLGH+DL+TTQ+YTH+ + L Q++ HPRA Sbjct: 245 HKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRA 299 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 176/295 (59%), Gaps = 4/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERL 63 +I+ F L E+N ++NTL+AY RD+ + ++ G +++Q L + Sbjct: 6 EKIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEYLFQLS 65 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + + S AR +S+++ F+YL ++ RED+P+ L SPKL LP LS VER+++ Sbjct: 66 KQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIK 125 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 A I L R++ M+EVLY GLRVSEL+ L +S+I+ ++ ++V GKG+K R VPL Sbjct: 126 AINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLAT 185 Query: 184 EAVYWLETYLEHGR-PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 ++ Y++ R + +N DVLF + R M+R + IK AGI+ +K+S Sbjct: 186 YTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN-KKIS 244 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH RH+FATHLL +GADLR +Q +LGHS ++TT+IYTH+ E LR + HPR Sbjct: 245 PHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPR 299 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 112/291 (38%), Positives = 162/291 (55%), Gaps = 5/291 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 E FL+ L +E+N +E+TL +Y+ DL ++L L L T + D + L+ K Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLK 65 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 TS +R +S +R ++Y +P L PK + LP+ E ++E L + D Sbjct: 66 RTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEED 125 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 LRD+ +LE+LYATG+RVSELV + DI V V+GKG+KER VP G Sbjct: 126 TSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQS 185 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL-AGIDSEKLSPHVLR 247 +E YLEH +P + + D L + + + +T + + + AG+ + PH LR Sbjct: 186 IENYLEHFKP--IQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSE--IHPHKLR 241 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H FATHLLN GADLR VQ LLGH +LSTT YTHV+ ++LR+++ HPRA Sbjct: 242 HTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRA 292 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 123/299 (41%), Positives = 172/299 (57%), Gaps = 8/299 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +E F+ L +NL+ NT AY DL V WL L L++ LA+ Sbjct: 45 LMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHKQLRSYLAQLYAAR 104 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y + + R LSA+R +++L R+ + D +A LASPK+P+ LP LSE+ +E+LL Sbjct: 105 YASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLATCQ 164 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D LRD+A+LE+LYATG R+SE L +SDIS VR+ GKG+KER+VP+ E Sbjct: 165 EDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYPECA 224 Query: 187 YWLETYLEHGRPWLLNGVSIDV-------LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 L YL RP LL+ +F S R + M+ Q + +HY L+ + E Sbjct: 225 RILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHLQ-E 283 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PH +RH+FAT LL+HGADLR VQ LLGH+ L+TTQIYTHV+ L+ ++ +PRA Sbjct: 284 IATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPRA 342 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 165/292 (56%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 + F + EK + +T + Y RDL + G+ L + ++ +A G Sbjct: 12 LAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASLHRQG 71 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S R LS++R FQY R + +P+ +A+PK P++LPK L Q + + A Sbjct: 72 LAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV-AVE 130 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D + RD+A+LE++Y++GLR++E+ L + DI +V V GKG+K R +P+G A+ Sbjct: 131 GDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGSVAI 190 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ +L + S LF +QR ++++ + R++ +V G+D+ + PH+L Sbjct: 191 AALKDWLSQREQY--APASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDN-PVHPHML 247 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA+H+L DLR+VQ LLGH+++STTQIYTH+ + L +++ + HPRA Sbjct: 248 RHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRA 299 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 169/312 (54%), Gaps = 20/312 (6%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT---LATAQSDDLQALLAER 62 A ++ FL L +E+N + +T+ AYR D+ + + + + + + + ++ Sbjct: 3 AALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSSL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E G S R LSA+R F+Y+ R + D+P L K Q LP +S Q++ L Sbjct: 63 FEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLT 122 Query: 123 QAP----------------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 +A + RD AM+EV+Y+ GLR+SE GL M DI L G+ Sbjct: 123 KAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGI 182 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 RV GKG KER+ LG + L Y + +F ++ +++T ++F Sbjct: 183 ARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRN 242 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K+Y + A + + L+PH LRH+FATHLL+ GADLR VQ +LGH +LSTTQIYTHV+ ER Sbjct: 243 LKNYLIAANLPPD-LTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAER 301 Query: 287 LRQLHQQHHPRA 298 +++++++ HPRA Sbjct: 302 MKEVYKEAHPRA 313 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 343 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 109/295 (36%), Positives = 167/295 (56%), Gaps = 4/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLE 64 I +FL + +E+ ++ TL AY++DL+ ++ G L D++ LA E Sbjct: 32 EAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNE 91 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y TS R LS++R F Y + + E +P + + LP+ E ++ +L + Sbjct: 92 QAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDS 151 Query: 125 P-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + RD+ +LEVLYATG+RVSEL L++ ++L ++RV+GKGNKER+VPLG+ Sbjct: 152 LYKREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGD 211 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A + YL H RP + + L + + M+ + R+K ++ + + P Sbjct: 212 SATQAIRDYLSHLRPKIDRN-NSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLK-IYP 269 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLLN GADLR VQ LLGH++LS+TQIYTHV ++LR + + HPRA Sbjct: 270 HKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRA 324 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 6/299 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQALLAER 62 + I F L +E+ +E T+ AY D+ ++L G L D+ ++ Sbjct: 1 MELISLFKQYLTVERQYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYL 60 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + TS +R +SA+R +++L + + +P + K +LP E ++ L Sbjct: 61 FDRHLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLF 120 Query: 123 QAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 +A + +LR+ A+LEVLY TG+RVSE L SDI + V+GKGNKER VP Sbjct: 121 EAVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPF 180 Query: 182 GEEAVYWLETYLE-HGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 G A L+ Y + P+L + + +F + A+ +T + + + ++ + Sbjct: 181 GRYAKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGK 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+LRH+FAT LLN+GADLR VQ LLGHS LSTTQIYTHV E+L++ ++++ PR+ Sbjct: 241 -IHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRS 298 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 157/298 (52%), Positives = 194/298 (65%), Gaps = 4/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + +DLAR FLD LWLE NLA N+L AY RDL ++ +L L A + DL LA Sbjct: 15 VDEDLAR---FLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRRLRDADAADLSLFLA 71 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 +RL+GG S AR LS++RR + + RE +R DDPSA L + + LP SE +V+ Sbjct: 72 QRLQGGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDA 131 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP L LRD AMLE LYATGLRVSELVGL S + L GVV +GKG+KERL+P Sbjct: 132 LLAAPDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIP 191 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +GE A+ L YL R LL LF + R + M+RQ FW IK +A AGI S Sbjct: 192 VGEVALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRS-A 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRHAFATHLL+HGADLR VQ++LGH+ L+TT+IYTH+A RL+ LH+QHHPR Sbjct: 251 FSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPRG 308 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 121/294 (41%), Positives = 178/294 (60%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 + IE FL + +EK ++ NT AY DL+ L G+ + + E + Sbjct: 4 SHIESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQ 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++S R +S++R +L DPS +L SPK ++LP S+ +VERLL + Sbjct: 64 AGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDS 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 PL LRD+AMLE+LY TG+RVSEL+GL + D+ G ++ GKG + R++P+ Sbjct: 124 VPTSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSV 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A ++E Y++ R L G + LF + R +++RQ FW IK A LAGI+ E ++PH Sbjct: 184 AQSFVERYIQQARNGL-GGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKE-ITPH 241 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VLRH+FATHLL +GADLR +Q +LGH+DL+TTQ+YTHV RL ++++HHPRA Sbjct: 242 VLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 119/304 (39%), Positives = 167/304 (54%), Gaps = 15/304 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 I+ F L + L++NT AYR DL + L G L +DL+ +++ Sbjct: 6 TIDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQ-SSK 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 + +S AR AVR F + + +P+A L +PK+P LP LSE+Q E+L+ Sbjct: 65 RHARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCV 124 Query: 126 LIDQPL-----------ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 P LR+ AMLEVLYATG+RV+ELVGL + D++ ++V GKGN Sbjct: 125 DEQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGN 184 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 K+R+VP G A + +LE GRP L+ S D LF + ++ ++ + A A Sbjct: 185 KQRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRA 244 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 G+ +SPH LRH+ ATHLL+ GADLR VQ LLGHS L TTQ YTHV+ E+L+ + Q Sbjct: 245 GVP--DISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQA 302 Query: 295 HPRA 298 PRA Sbjct: 303 FPRA 306 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 170/299 (56%), Gaps = 14/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE +LD L K +ENT+ AYR DL +V+ L T+ ++ A+ L G+ Sbjct: 35 IEDYLDFLTFTKGRSENTVKAYRNDLHSLVDGL----TTVDQLTLHHIRRWQADALRAGH 90 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ---- 123 +S +R SAVR ++L + DP++ L+SP+ + LP+ L+ Q +L Sbjct: 91 ARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLEV 150 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + P+ LRD AM+E +Y TG+RVSEL L + D+ + V ++GKGNK+R+VP GE Sbjct: 151 GAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPFGE 210 Query: 184 EAVYWLETYLEHGRPWLL----NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 A + L+ +++ GRP + + + + +F +R ++ + + + + Sbjct: 211 SAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQAT--STVSGG 268 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH+ AT +L GADLRVVQ +LGH+ L+TTQIYTHV +ERL+ + Q HPRA Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 163/301 (54%), Gaps = 18/301 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----------HHRGLTLATAQSDDLQ 56 + QFL L EK + +T+ AY DL+ + + + ++++ ++ Sbjct: 3 VTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPVR 62 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 L + + + +R LSA++ F YL E +P+ +++PKLP+ +P+ L+ Sbjct: 63 GFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVD 122 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 ++ LL + ++ R++A+ E+ Y+TG+RVSEL L + DI +VRV GKGN+E Sbjct: 123 ELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNRE 182 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 RLVP+G+ A+ ++ Y LF ++ A + + + + G+ Sbjct: 183 RLVPVGDRALKAVDDY------RTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGL 236 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 +SPH LRH+FATH+L+ GADLR +Q +LGH+ LS+TQIYTHV RL +++ + HP Sbjct: 237 -GVPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHP 295 Query: 297 R 297 R Sbjct: 296 R 296 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 343 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 114/291 (39%), Positives = 161/291 (55%), Gaps = 5/291 (1%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL---TLATAQSDDLQALLAERLEGGY 67 FL L ++ + T+ AY DL +L R D+ A LA+ G Sbjct: 15 FLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLHRRGL 74 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S R LSA+R +++L + K +DP A LA+PKLP+ PK L+ Q L++ + Sbjct: 75 AKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVETEIT 134 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 P LRD A+LEVLY +GLRVSE +GL + + L Q +VRV+GKG KERLVPL A Sbjct: 135 LDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTGPAAE 194 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L Y+E R +F +R +++R+ +K AV +G +SPH LR Sbjct: 195 RLARYIEQ-RGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPC-SISPHTLR 252 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FA+H+L GADLR VQ LLGHS +STTQ YTH+ ++ +++ HP A Sbjct: 253 HSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLA 303 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 118/300 (39%), Positives = 169/300 (56%), Gaps = 11/300 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGY 67 + FL+ L +E+ + +T+ AY+RDL V +L G TLA DL+ + +G Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFA 77 Query: 68 K-----ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 +TS R L+A R +YL+ + ++ + KLP+RLP+ LS ++E LL Sbjct: 78 SFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALL 137 Query: 123 QAPL-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG--VVRVIGKGNKERLV 179 A LRD+A+LE LYA+G R+SE + L + DI +VR+ GKG KER+ Sbjct: 138 AAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERIS 197 Query: 180 PLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 LG +A L+ YL RP L G S +F + + M+RQT W I+ A A ID Sbjct: 198 MLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQID- 256 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH LRH FATHLL GAD+RVVQ LLGH+ ++TT+IYT V+ + L +++ HPRA Sbjct: 257 RPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRA 316 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 121/303 (39%), Positives = 187/303 (61%), Gaps = 9/303 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 +++ + FLD L +EK L+ +++AY +D+ E+L R +L A+ D++ L Sbjct: 5 EKNDRLLRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDS 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + AR LS+ R+ ++YL ++ E DP+ ++ SP+ + LPK LS +V + Sbjct: 65 LFSNQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQT 124 Query: 122 LQAPLI------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 LQ P Q L LRD+AMLEV YA LRVSE++G+ M D L G + V GKG+K Sbjct: 125 LQGPPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDK 184 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 ER+VPLG+ A+ +++YLE GR L G + +LF + ++++RQ W + + +G Sbjct: 185 ERIVPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASG 244 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 SPH+LRH+ ATH++ +GADLR VQ +LGH+D+STTQIYTH+A +RL+Q+H+ H Sbjct: 245 ---RHASPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFH 301 Query: 296 PRA 298 PR+ Sbjct: 302 PRS 304 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 175/287 (60%), Gaps = 2/287 (0%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 +L+ +EK L+ NTL +Y+RD+ + +++L ++ A D++ L+ER E G K+ Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNKKSILKATRKDIEKFLSERKEQGSKSR 61 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 + AR ++ L+++L E + +P+ +L +L + LP+ L++ +V+ LL Sbjct: 62 TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTD 121 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 LRDKA+ E++Y++GLRVSE+ L + DI +++ GKG +ER+VP+ + A+ L+ Sbjct: 122 KGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDILQ 181 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 Y++ R ++ G LF + R +++R W +K + I+ + + PH LRH+F Sbjct: 182 RYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIE-KNIYPHTLRHSF 240 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 ATHL+ HGADLR VQ +LGHSD++TT+IYTHV + L++ + HP+ Sbjct: 241 ATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPK 286 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M+ L + FL L +EK + +T+ Y R L W D ++ L Sbjct: 2 MRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLF 61 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + L+ +S +A+R ++++ R E +P ++ P+ + LP L+ Q+ Sbjct: 62 QELKDEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLE 121 Query: 121 LLQAP-------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 LL+ P L RD A+LE+ Y+ G+R+SELVGL + + R V+V+GKG Sbjct: 122 LLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKG 181 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KER++P+G A+ LETY+ + LF S+ +++ ++ + Y L Sbjct: 182 RKERILPVGTPALAALETYVS-----MACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKL 236 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 + I +SPH +RH FATH+L GADLR VQ LLGH+ LSTTQIYTHV R+ ++++Q Sbjct: 237 SSIPF-TISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQ 295 Query: 294 HHPRA 298 HPRA Sbjct: 296 AHPRA 300 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 8/297 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWL----HHRGLTLATAQSDDLQALLAERLE 64 + FLD L +E+ + T AY D++ + +L + + L+ S D++ L+E E Sbjct: 11 QLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSELYE 70 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + + AR +S++R +++L + ++P + K Q LP+ + ++ ++ Sbjct: 71 KGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKMFDV 130 Query: 125 PLIDQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + DQ L LR+ +LE+LY TG RVSE+ +T+ ++ VV + GKGNK R+VP G Sbjct: 131 VMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVPFGR 190 Query: 184 EAVYWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A L YL+ GRP L + + LF +QR +T + +K +G+ E + Sbjct: 191 YAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQE-V 249 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + H+ RH FAT LLN+ ADLR VQ LLGHS LSTTQIYTHV T+ L++ ++ PRA Sbjct: 250 TAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRA 306 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 106/290 (36%), Positives = 166/290 (57%), Gaps = 2/290 (0%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 ++ L +EK + +T++ Y++D+ + + H + D++ LA + GY Sbjct: 14 RDYMRYLQIEKGASPSTISQYQKDICAFFQNMDHT-KPVEDVNHQDIRRYLALLQKDGYA 72 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 + AR L+++R L+++L RE + +P ++ +PKL ++LP L E +++ + A D Sbjct: 73 RRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTD 132 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 L R+ A++E+LYA+G+R SE GL + DI L + V+GKG KER +P+G AV Sbjct: 133 SLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSFAVEA 192 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRH 248 L YL+ D LF + R +T + + A + S+ L+PHV+RH Sbjct: 193 LSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSK-LTPHVIRH 251 Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATH+LN GADLR VQ LLGH+DL TQIYTHV +RLR +++ HPRA Sbjct: 252 TFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRA 301 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 98/301 (32%), Positives = 166/301 (55%), Gaps = 6/301 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M+ D A + FL + EK +++T+ Y RDL+ + +L + + A L+ + Sbjct: 10 MQIDKA-VSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFV 68 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A + G ++ R ++ ++ F ++ ++ +D+P+ L PK Q+ K + + Sbjct: 69 AMLFDKGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSII 128 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL AP D+P +RD + E++Y TG+RVSELVGL +SDI + V GKG KER+V Sbjct: 129 ALLDAPDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIV 188 Query: 180 PLGEEAVYWLETYLEHGRPWLLNG--VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 P+ + + + YL+ + + NG + +F ++ ++T ++ ++ Y +AG+ Sbjct: 189 PIADMHIEMINDYLD-VKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLP 247 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + SPH RH++ATHLL GADLR +Q LLGH L+TTQ YTH+ L +++ HP Sbjct: 248 MD-FSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPF 306 Query: 298 A 298 A Sbjct: 307 A 307 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 103/293 (35%), Positives = 173/293 (59%), Gaps = 4/293 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 + + F+ L +E+ +A+N++ +YRRD+ + + + ++DD+ L E Sbjct: 25 SYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFC---PKEIGNYETDDITKYLLSLQEI 81 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G TS AR A+ + F +L + KL +LP L+ ++ +LL + Sbjct: 82 GLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQLLNSL 141 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + PLE+R+K M+E+LYATG+R+SEL+ +++ D++L + V+ V GKG+K+R VP + Sbjct: 142 PVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRYVPYVDTL 201 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 YL+ RP LL ++LF + R ++M+R FW ++ + A I ++++PH Sbjct: 202 DELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANI-KKEVTPHT 260 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL G +LR+VQ LLGHS + TTQIYTH+ +RL + ++++HPRA Sbjct: 261 FRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 118/291 (40%), Positives = 169/291 (58%), Gaps = 6/291 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +E F L EK LA+NTL AYRRDL +L R + + + LA + + Sbjct: 5 LEDFFIYLASEKGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQH 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y + S R L A++ LF++L RE + + +PKL Q +P LS +++R+L P Sbjct: 65 YASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPN 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 I RDKA+LE LYA GLRVSEL L + D+ VRV+GKG KER+VP+G++A+ Sbjct: 125 IQTWRGARDKAILETLYACGLRVSELCQLKIYDVD--DTFVRVLGKGGKERIVPIGQQAI 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL + LF +++++ +TR W +K YA A I + +SPH Sbjct: 183 AAIDGYLSFREG--GENSRNEFLFITKKSKPLTRALVWKLVKFYARQASI-FKSISPHTF 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH FATHLL+HGADLRV+Q +LGH+ +++T YTHV+ RL+Q Q HPR Sbjct: 240 RHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 11/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL------HHRGLTLATAQSDDLQALLAE 61 I+ FL L +EKN + T +Y++DL +++ + + + LA Sbjct: 5 IDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAH 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G + AR L+A R ++YLYREK + +P +ASPKL +RLP+ L E + + L Sbjct: 65 MQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKEL 124 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 ++AP QPL +RD+A+LE LYA GLR+SELV L + D+ + G +RV GK +ERLVPL Sbjct: 125 VEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPL 184 Query: 182 GEEAVYWLETYLEHGRPWL----LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 G AV L+ YL RP L + + LF + R ++++ + + Y ++ Sbjct: 185 GSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLE 244 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + +SPH LRH+FATHLLN GADLR VQ L+GH LS+TQ+YTHV ERL++++++ HPR Sbjct: 245 RK-ISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHPR 303 Query: 298 A 298 A Sbjct: 304 A 304 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 172/293 (58%), Gaps = 7/293 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 ++Q+LD L K + +T+NAY RD+ ++E L +G A AQ+D ++ + + Sbjct: 12 VQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTARKTH 71 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA-P 125 S R+LS+ R F YL ++ + +P + +PK P++LP L Q+ ++L A Sbjct: 72 LAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVLNATI 131 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D P+ +RDKAMLE+ Y+ GLR++EL L + DI L + V GKGNK R +P+G +A Sbjct: 132 TSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPIGRQA 191 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+++L+ L + LF + R Q+M + R+ A +A + + PH+ Sbjct: 192 ITALKSWLQQRGQ--LKCHDANALFINHRGQRMGVRGIQMRM---ANMAATHGQHIHPHM 246 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+HLL DLR VQ LLGHS++STTQ+YTH+ + L +++ + HPRA Sbjct: 247 LRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRA 299 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 122/292 (41%), Positives = 185/292 (63%), Gaps = 1/292 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 IE+ L L +E++ A NT YR+ L ++W+ L++ + +S ++ L E + G Sbjct: 13 TIEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHIELFLDEERKRG 72 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S + A+R LF+YL + + +P H P + RLP+ L+ ++E+LLQAP Sbjct: 73 LSDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPF 132 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL RDKA+LE+LY++GLRVSEL+ L + ++V+GKGNKER VP+G+ A Sbjct: 133 PDTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGKCAK 192 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ Y+ GR LL + +F +QR Q +TR I HYA L GID +K+ PH+L Sbjct: 193 EALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGID-KKVYPHLL 251 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH FA+HL+ +GADLRV+Q LLGH++++TTQIYTHV + L+++H++ HPR+ Sbjct: 252 RHTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 110/296 (37%), Positives = 168/296 (56%), Gaps = 7/296 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---HRG-LTLATAQSDDLQALLAER 62 I F + L LE + T+ AY+ DL ++ G + + +++ Sbjct: 4 YIADFCNYLALE-GKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRFL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E S AR +A+ F+Y R F +++P + PK LPK +E +V LL Sbjct: 63 NEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTLL 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P D P +R+KA+LE LY++GLR+SEL G+ + DI L++G+VRV GKGNK+R+VPLG Sbjct: 123 SIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLG 182 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 A+ + YL+ RP + S D+LF ++ + + +K Y L ++ S Sbjct: 183 SYAIEAINNYLK-VRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVA-KAKGYS 240 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLL+ GADLR +Q LLGHS LSTT+ YTH++ E +++ +++ HPR+ Sbjct: 241 PHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRS 296 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 106/289 (36%), Positives = 177/289 (61%), Gaps = 6/289 (2%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKA 69 + D L +EK +++TL+ Y+R L + + L G+ T S ++ ++A+ + G A Sbjct: 15 YWDYLRIEKQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S A L A+R+ F YL R++ +P+ + +PK +RLPK++ Q+ +LL + + Sbjct: 75 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTS-DSHE 133 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 P +LRD AM+E++Y++GLR+SEL GL + D+ L VR++GKGNKER+VP+G +A+ L Sbjct: 134 PSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEAL 193 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 +L + + +F ++R +++ ++ ++ + G++S L PH LRH+ Sbjct: 194 NRWLAVRNQF---KPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLES-HLHPHKLRHS 249 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATH+L DLR VQ LLGHS+L+TTQIYTH+ + L +++ HPRA Sbjct: 250 FATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRA 298 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 121/295 (41%), Positives = 182/295 (61%), Gaps = 8/295 (2%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQALLAERLEGGY 67 FL+ L EKNL+ T++ Y +DL+ + + + ++ LA + Y Sbjct: 7 DFLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLKDKNY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + +++AR LSA+R LF++L RE+ + SA LA+PK ++LP+ LS +VE L+ AP Sbjct: 67 EKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLINAP-G 125 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P LRDKA+LEV Y +G+R+ EL GL + ++ L+ G ++V GKGN ERL PLG A+ Sbjct: 126 DDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSFALA 185 Query: 188 WLETYLEHGRPWLLNG----VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +E YL + RP LL + D LF ++ ++++++ R+K Y ++SP Sbjct: 186 AIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTA-SEHRVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL GADLR VQ LLGH ++STTQIYTHV R+ +++ ++HPRA Sbjct: 245 HSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 340 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 108/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 ++QF + L EK L+ +T Y++ L M E LH GL + ++ L + + G Sbjct: 17 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 76 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KA+S A LS++R F +L +P+ +++P+ + LPK+L +V +LL+ Sbjct: 77 MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLE-VN 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL +RD+A++E++Y GLR++ELV + + D+ LR G +RVIGKGNKER VP AV Sbjct: 136 EDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAV 195 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+ +L+ L S LF S+ +++ ++ R+ + + S ++PH L Sbjct: 196 EWVGKWLKVRSG--LADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVAS-HITPHKL 252 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L +LR VQ LLGH ++STTQIYTH+ + L ++ Q HPRA Sbjct: 253 RHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRA 304 >UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax=Bifidobacteriaceae RepID=D2RA91_GARVA Length = 322 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 166/307 (54%), Gaps = 16/307 (5%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 ++ I+ ++D + K L E T AY D+ + W + G ++ +DDL++ +A+ Sbjct: 19 MSLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADE- 77 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + +S AR + AVR F + ++ +P+ L + K+ LP L E Q E L+ Sbjct: 78 SRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMN 137 Query: 124 A-----------PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 P + + LR+ A+LE+LYATG+RV EL L + DI+ ++V GK Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197 Query: 173 GNKERLVPLGEEAVYWLETYL-EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231 GNK+R+VP G A L ++ + GR LL + +F R +++ ++ + A Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 A + +SPH LRH+ ATH+LN GADLR VQ LLGHS L+TTQ YTHV+ E L++ + Sbjct: 258 KSAHVP--DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKY 315 Query: 292 QQHHPRA 298 Q PRA Sbjct: 316 SQAFPRA 322 >UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178962A Length = 294 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 114/293 (38%), Positives = 170/293 (58%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 +++++ L EK L+ +T+ +YR DL + + R +T L + + Sbjct: 4 YLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQ 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A+S R +++R FQYL R+ DP+ L +PK ++ PK L+ QV++LL AP Sbjct: 64 GKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 P RDKAMLE+LYA+G++VSELV L++ DI L +R G KER++P+ A Sbjct: 124 DSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIA 183 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + Y+ R L+ D LF + ++TRQ FW IK Y LAGID E ++PH Sbjct: 184 AESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGID-EDITPHT 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA HLL +GADLR VQ +LGHS LSTT +Y A + +++++ +HPR+ Sbjct: 243 LRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPRS 294 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 114/326 (34%), Positives = 186/326 (57%), Gaps = 34/326 (10%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-------RGLTLATAQSDDLQAL 58 +++ FL L E+N++ T+ AYR+DLS +E+L + ++LA ++ ++ Sbjct: 12 SQLTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLF 71 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E L+ GY++ S R L++V+ F++L P+A++ +PK + LP L+E Q Sbjct: 72 LGELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQT 131 Query: 119 ERLLQAPLID----------------------QPLELRDKAMLEVLYATGLRVSELVGLT 156 + L L RD+A+LE+ Y+ GLR++EL+GL Sbjct: 132 QTLFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLN 191 Query: 157 MSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSI----DVLFPS 212 + ++ + G V+V+GKG K+R++PLGE A L+ YLE + + S + +F + Sbjct: 192 IMELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVT 251 Query: 213 QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSD 272 ++ +++ +K Y + +K SPHVLRH FATHLLN+GADLR V +LGHS+ Sbjct: 252 EKGKRVYPVLVQRLVKKYLSPV-TEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSN 310 Query: 273 LSTTQIYTHVATERLRQLHQQHHPRA 298 LSTT+IYTH++ ERL+Q++QQ HP+A Sbjct: 311 LSTTEIYTHISFERLKQVYQQAHPKA 336 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 109/294 (37%), Positives = 174/294 (59%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 + I+++L+ L EK +E+T+N YRR L ++ + H G + + D++ L+A+R Sbjct: 3 SDIQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKRHR 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G +SSA LSA+RR ++L EK +P+ + PK +RLPK++ + L Sbjct: 63 QGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQ 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D+P+E+RDKAM+E+LY++G+R++EL + + D+S +RV+GKGNK R VP G Sbjct: 123 MPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFGNS 182 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + L +L+ R LF SQ+ ++T + R+ H+ G++ ++L PH Sbjct: 183 SKKVLSLWLKE-RNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLN-DRLHPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+ ATH+L +DLR VQ LLGH+ +STTQIYTH+ + L + + HPRA Sbjct: 241 KLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRA 294 >UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W041_9ACTO Length = 302 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 7/300 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAER 62 +LA ++ F L + + +T AY D+ +E+ T S L++ L+ R Sbjct: 5 NLALLKDFTTWLEHFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNR 64 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G+ S AR +++R + ++ DPS L + K+ LP+ LS Q+ +L Sbjct: 65 IRKGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLF 124 Query: 123 ----QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 + +RD A E+LY+ G+RV+ELVGL ++ + +RVIGKGNKERL Sbjct: 125 NHLVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERL 184 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VP G A+ L ++ GRP L+N S LF R ++ ++ ++ V AG+ Sbjct: 185 VPFGTPALESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPV 244 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRH ATH+L GADLR VQ +LGH+ L+TTQ YTHV RL + +Q HPRA Sbjct: 245 --LSPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 108/288 (37%), Positives = 177/288 (61%), Gaps = 6/288 (2%) Query: 16 WLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG-YKATSSAR 74 + +N +E+T+ AY+RDL+ + + L L ++ DL+ LA R+E ++S R Sbjct: 22 RIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEKDQLSSSSLQR 81 Query: 75 LLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLE-- 132 L+++R+ ++ + ++ + +PS + P+ LP + V ++L D+P+E Sbjct: 82 HLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAPPDKPIEQQ 141 Query: 133 --LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 LRDKA+LE+LY++GLR++EL GL + DI + ++R+ GKGNK R+VP G++A L Sbjct: 142 LWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFGQKAKDSLI 201 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 +L+ R W +F SQR ++T + +R+K A AG++ + L PH+LRH F Sbjct: 202 EWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVD-LHPHLLRHCF 260 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 A+H+L+ DLR VQ +LGHS+LSTTQIYTHV ++L +++ Q HPRA Sbjct: 261 ASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRA 308 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 114/306 (37%), Positives = 184/306 (60%), Gaps = 9/306 (2%) Query: 1 MKQDLARIEQFLDALWLEK---NLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQA 57 M+ +L Q L E+ N +E+T+ AY RD+ +E+ + + L ++ DL+ Sbjct: 1 MESNLDFALQLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLRE 60 Query: 58 LLAERLEGG-YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 LA+R+E ++S R L+++R+ ++ + K+ E +P+ + P+ LP + Sbjct: 61 YLAQRVEQDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIE 120 Query: 117 QVERLLQAPLIDQPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 V ++L P+ ++P++ LRDKAMLE+LY++GLR++EL GLT+ DI + +VR+ GK Sbjct: 121 TVNQILDQPMPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGK 180 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 GNK R+VP G++A L +L+ W + +F SQR +T + R+K A Sbjct: 181 GNKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQ 240 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG++ + L PH+LRH FA+H+L+ DLR VQ +LGHS+LSTTQIYTH+ + L Q++ Sbjct: 241 RAGVNVD-LHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYD 299 Query: 293 QHHPRA 298 Q HPRA Sbjct: 300 QAHPRA 305 >UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriaceae RepID=C8WGZ0_EGGLE Length = 323 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 164/302 (54%), Gaps = 10/302 (3%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 I+ F A+ +E+N + +TL AYR DL W + + A L+ L E Sbjct: 23 ELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGELDRA 82 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL--- 122 Y T+ R LSA+R F++L ++DP++ L PK P+ LP + + + +LL Sbjct: 83 QYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTVY 142 Query: 123 ---QAPLID---QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 A + ++ R+ A+LE LYA G RVSE GL +++ G V+V GKG+KE Sbjct: 143 GKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSKE 202 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R+VPL + AV + Y RP +L + D F S R +M K AG+ Sbjct: 203 RIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAGL 262 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 D E LSPH +RH FAT LL+ GADLR VQ +LGH+ LSTTQIYTH++ RL+Q+H + HP Sbjct: 263 D-ESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHARTHP 321 Query: 297 RA 298 R Sbjct: 322 RG 323 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 175/312 (56%), Gaps = 21/312 (6%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 + QFL + +E+ L++ T+ AY DL V WLH +G+ L + ++ +A + Sbjct: 7 LVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDS 66 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A S AR L+++ ++ E DD +A + +PK LP LS +V RL+ + Sbjct: 67 GESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMDSI 126 Query: 126 LI---------------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 + D P+ LRDKA+LE +YATG RVSE G+ + DI L V R++ Sbjct: 127 PLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLM 186 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWL----LNGVSIDVLFPSQRAQQMTRQTFWHR 226 GKG+K+RLVP+G A L YL GRP L +F ++R ++++RQ+ W Sbjct: 187 GKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVWEI 246 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 I+ A I ++ L PH LRH+FATHL+ GAD+R VQ LLGH+ ++TTQIYTHV+ E Sbjct: 247 IRTAGERAHI-TKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEN 305 Query: 287 LRQLHQQHHPRA 298 L + + HPRA Sbjct: 306 LIEAYLTAHPRA 317 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 178/304 (58%), Gaps = 15/304 (4%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR------GLTLATAQSDD 54 M+ D A + F L + N +++TL AY +DL + +T+ Sbjct: 1 MQADHA-LSLFDGHLKTQ-NRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYI 58 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 +++ L E + G + S AR LSA+R F++L RE + +P +A+PKL ++LP LS Sbjct: 59 VRSFLGEMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLS 118 Query: 115 EAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 +++RL++ P L RD+ +LE+LY +GLRVSEL L DI ++RV GKGN Sbjct: 119 LEELDRLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGN 178 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 KER+VPL A+ YLE + + L + + +++ ++ + A+ A Sbjct: 179 KERIVPLTNYALEAARQYLE------MREDKQEALLLNYQGTRLSVRSIRRILDGLALEA 232 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 G+ S+ L PH+LRH+FATHLL+ GADLR VQ LLGH+ LS+TQIYTH+ ERLR++++Q+ Sbjct: 233 GL-SQHLHPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQN 291 Query: 295 HPRA 298 HPRA Sbjct: 292 HPRA 295 >UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD80_THET1 Length = 310 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 171/285 (60%), Gaps = 9/285 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQAL 58 M L+ +E+F+ L E++ + NT AY+ D+ +WL + + A S D+Q Sbjct: 1 MFDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDY 60 Query: 59 LAERL---EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 L + Y ++ AR ++A++ FQ+L + + +P++ L SP++ + PK +S Sbjct: 61 LLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISV 120 Query: 116 AQVERLLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 +V LL A + P +RD+AMLEVLY TGLRVSELV L + DI+L + ++ IG+G Sbjct: 121 QEVNMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRG- 179 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 K R VPL + AV L+ YLE RP L+ G LF + R Q++TRQ FW +K YA A Sbjct: 180 KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEA 239 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 GI + ++PH LRH+FA H+++ G DLR VQ LGH+ ++TTQ+Y Sbjct: 240 GI--KGITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 162/300 (54%), Gaps = 9/300 (3%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERL 63 + ++ F L LE+ +++T AY DL + + + R G L + L+A L+ + Sbjct: 3 SVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQA 62 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G T+ AR SAV+ + R DP+ L PK + LP L + Q L Sbjct: 63 AAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALD 122 Query: 124 APLID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 A PL LRD+ ++E+LYATG+RVSEL GL + D+ + ++RV+GKG+K+R V Sbjct: 123 AANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTV 182 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKH-YAVLAGIDS 238 P GE A L +L GRP L S L R +++ + + +AG + Sbjct: 183 PFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAG--A 240 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH LRH+ ATHLL GADLR+VQ LLGHS L+TTQ+YTHV RLR +H Q HPRA Sbjct: 241 PDIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 169/303 (55%), Gaps = 8/303 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA 60 KQ ++ E+F++ + ++ + T ++Y RDL +L + +T + + + Sbjct: 13 KQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVT 72 Query: 61 ERLEGGY-----KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 G +S +R+LS +R + YL R K + +P+ L +PKL + +P+ L+ Sbjct: 73 LLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTF 132 Query: 116 AQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 Q+ L + ++ P LR++A+LE +YA GLRVSE+ LT++++ L + ++ V GKG+K Sbjct: 133 DQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDK 192 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R+VP + L YL R L +F SQR +T + + AG Sbjct: 193 QRIVPFYKRLRTLLTRYLRDSRALYLK-EEHGFVFVSQRGAPITPRAVQLILAQAGQDAG 251 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 ++ + L PH+LRH+FATHLL++G DLR VQ LLGHS LSTTQIYTHV +RL+Q H Sbjct: 252 LN-QPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAH 310 Query: 296 PRA 298 P + Sbjct: 311 PHS 313 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 111/324 (34%), Positives = 173/324 (53%), Gaps = 33/324 (10%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAERLE 64 +I+QFL+ + +E+ L+ T+ +Y DL+ WL + D++ + Sbjct: 12 KIQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSS 71 Query: 65 G-----GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + AR ++++ +++ DPSA + +PK + LP LS ++VE Sbjct: 72 QAMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVE 131 Query: 120 RLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 R++ A + LRD+A++E LYATG RVSE VGL DI L + VVR+ GKG K+ Sbjct: 132 RVIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQ 191 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLL----------------------NGVSIDVLFPSQR 214 RLVP+G+ AV L YL + RP L + V+F ++R Sbjct: 192 RLVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKR 251 Query: 215 AQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLS 274 + ++RQ+ W I +A I ++L PH LRH+FATHL++ GAD+R VQ LLGH+ ++ Sbjct: 252 GKSLSRQSAWEAISRAGKMAKI-GKELHPHTLRHSFATHLISGGADVRTVQELLGHASVT 310 Query: 275 TTQIYTHVATERLRQLHQQHHPRA 298 TTQIYTH++ + L + + HPRA Sbjct: 311 TTQIYTHISPDALMEAYVMSHPRA 334 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 175/293 (59%), Gaps = 5/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAERLE 64 + ++ L +EK L++NT+ +Y RDL ++ + + + L E + Sbjct: 6 ALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKELSK 65 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 S +R L ++R L+ +L +E +++ + PK ++LP LS+ ++ +L Sbjct: 66 TNC-TNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEILDG 124 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 ++ + R++ M+E+LYATG+R+SEL+ LT+ D++++ G ++VIGKGNKER++P+G Sbjct: 125 IIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIGSY 184 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 LE Y+ R N + +LF ++ Q+++R+ F+ ++ I ++K+SPH Sbjct: 185 VGEILEQYINDYRAEF-NIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSI-TKKVSPH 242 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH FATHLL +GADLR +Q LLGHSD+STT IYTH++ +++R +QQ HPR Sbjct: 243 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPR 295 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 7/298 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M + R++ FL L +E+NL+ T+ +Y+ DL + WL G+ L Q + L L Sbjct: 1 MSLNSNRLDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGIDLKDLQPEKLDEFLT 60 Query: 61 -ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + Y TS AR S++R +Y+ + + + LA+PKL LP+ L+ +++ Sbjct: 61 LTAGQEEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEID 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + ++ + LRD A++E++Y+ GLR+SE +G+ +S I L + IGKGNK+RLV Sbjct: 121 SVFESA-ANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PLG +A L ++E GRP L + D + + + M+R W ++ + + S+ Sbjct: 180 PLGSKAKENLRAWIEEGRP--LTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMH---LSK 234 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 ++SPH RH+FATH L G DLRV+Q LLGH+D+STTQIYTHV + ++Q H+ HPR Sbjct: 235 QVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPR 292 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 116/292 (39%), Positives = 158/292 (54%), Gaps = 10/292 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 R+E FL+ L LE+ + NT AYRRDLS V + RG + D + LA G Sbjct: 13 RMESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEVDTVSLFLASLRSQG 72 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R + ++ ++L +DP P P +P L+E +V RLL+A Sbjct: 73 AAKSSVQRAAACIKSFSRFL---GEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATA 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D P +LRD+AM+E+LY GLR SEL LTM D+ L G VRV GKG+K R++PL E Sbjct: 130 GDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETR 189 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 LE YL+ + G +F R R+ W I+ A I + +L PH+L Sbjct: 190 SALERYLK------VRGTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHIL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+ ATHLL G DLR +Q LLGHS + TT++YTH E LR ++ + HPRA Sbjct: 244 RHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRA 294 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 111/292 (38%), Positives = 168/292 (57%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALLAERLEGG 66 + QF L LE+ L++NT++AY DL+ + + + DDL + Sbjct: 2 LAQFKLYLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRE 61 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ +R L ++ F++LY+EK D HL S +L + LP LS ++ERLL Sbjct: 62 LNDSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYD 121 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 PL+ R+K ++E+LY+ GLR+SEL GL + G +RV GKG+KER VP G + Sbjct: 122 EAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVA 181 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Y+++ RP L + L S + +TR W +K A+ A I+ + L PHVL Sbjct: 182 SMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEIN-KNLHPHVL 240 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA+HLL++ ADLR++Q LLGH+D++TT+IYTHV RL+ +HQ+ PRA Sbjct: 241 RHSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 169/310 (54%), Gaps = 22/310 (7%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGY 67 E++L+ + +E+ + +TL++Y DL++ + +L + A + ++A +A G Sbjct: 9 EEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIAHLFHEGM 68 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +++ R +S+++ +++ E+ E+ P+ +L PK LP L++ Q+ LL P Sbjct: 69 SSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHLLDDPFK 128 Query: 128 DQPLEL------------------RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRV 169 Q L RDKA+LE+LY GLRVSEL GL D+ + +VRV Sbjct: 129 PQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLVSDELVRV 188 Query: 170 IGKGNKERLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIK 228 GKG+KERLVP A+ + Y R L + + D +F S R +++RQ + ++ Sbjct: 189 FGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQAVFSLVE 248 Query: 229 HYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 Y GI + L PH LRH++ATH+L G +LR+VQ LLGH+ +STTQ+YTH+ +R Sbjct: 249 RYGSYVGI--KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIR 306 Query: 289 QLHQQHHPRA 298 + HPRA Sbjct: 307 SEYMAAHPRA 316 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 164/302 (54%), Gaps = 5/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQAL 58 M Q + ++++ + L E+ + TL AYR D+ V + G + D++ Sbjct: 1 MNQITSTMKKYEEYLQAERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIY 60 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E TS AR +S++R + +L + +P A++ ++LP+ L A+V Sbjct: 61 LNNLYERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEV 120 Query: 119 -ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 E L A LR+ A++E+LYATG+R+ E+ LT S I +V + GKG K+R Sbjct: 121 IEYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 ++P G+ A+ L+ YL + +F + R +Q+T + +K + + + Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKL 240 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH+LRH+FATHLLN+GAD+R VQ LLGH+ LSTTQIYTH+ TE L++ +++ Sbjct: 241 TA-NIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFD 299 Query: 297 RA 298 RA Sbjct: 300 RA 301 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 169/292 (57%), Gaps = 5/292 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQALLAERLEGG 66 EQFL L E++ + T+ AY++DL+ ++ G DL+ L + Sbjct: 5 EQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQK- 63 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +++ +R LS+++ +++L R + DP+ + + ++LP+ + +V +++++ Sbjct: 64 LASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLN 123 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +PL +R++A++ + YATG+R+SEL L + + L G++ V GKGNK+R V +E+ Sbjct: 124 DGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESK 183 Query: 187 YWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +LE YL+ RP LL N +F ++ + ++ + ++ AG+ + PH Sbjct: 184 KYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTA-GAHPHE 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LRH+FAT +LN+GADLR VQ LLGH DLSTTQIYTHV+ + L ++QH PR Sbjct: 243 LRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 164/298 (55%), Gaps = 10/298 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 Q L IE F D L L ++ T+ YR DL M + L +L+A L Sbjct: 22 SQMLEAIEDFCDYLILVVGRSDATVRGYRSDLRHMAATI----PDLTEFTLPNLRAWLGR 77 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 +E G + AR ++V+ + + D +A L SPK+ + LP+ L E Q Sbjct: 78 AVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEF 137 Query: 122 LQAPLIDQPLELR-DKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 + + D E R D A+LE+LYATG+RVSEL GL + D+ + +VRV+GKG+KER++P Sbjct: 138 MGSAAADTEDEFRRDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIP 197 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G+ A LE +LE R + D +F R ++ + + A +AG ++ Sbjct: 198 FGKAAADALEQWLE-ARDRMAKV--EDAMFVGVRGGRIDARQIRRIVDRTAQVAG--ADH 252 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRH ATHLL+ GADLR VQ +LGHS L TTQIYTHV+++RL + +Q HPRA Sbjct: 253 LSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales RepID=A6TR58_ALKMQ Length = 294 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 173/293 (59%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 I F+ L EK+L+ NTL +Y+RD+ +L + + + L + Sbjct: 4 LINNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKE 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A++ +R L+++R + YL K + DP+ +L SPK+ ++ P L+ +VE LLQ P Sbjct: 64 GRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L P +RDKAMLE+LYATG+RV+EL+ L + D+++ G +R KER++P+G + Sbjct: 124 LNTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCC-NNTKERVIPIGTLS 182 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+ Y+ + R LF + ++TRQ FW IK Y A I+ + ++PH Sbjct: 183 LIALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIE-KSITPHT 241 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHL+ +GADL+ VQ +LGHSD+STTQ+Y + +++ ++ + HPRA Sbjct: 242 LRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 1/288 (0%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 ++ L LEK+L++NT++AY DL ++ +L + + + ++L+ A + G Sbjct: 13 KYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHDIGIHP 72 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S AR+LS +R +++L E + + DP+ L SP+ +LP+ ++ +++ L+ + Sbjct: 73 RSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSIDRST 132 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 R++A+LE LY+ GLRVSEL L +S++ +G ++V GKG+K+RLVP+ A+ + Sbjct: 133 KEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPRAIKEI 192 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 Y + D +F S + ++R +H IK A G+ +K+SPH RH+ Sbjct: 193 RLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGL-KKKISPHTFRHS 251 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 FATHLL GA+LR +Q +LGH + TT+IYTH+ LR +HHPR Sbjct: 252 FATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPR 299 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 117/297 (39%), Positives = 161/297 (54%), Gaps = 7/297 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG 65 +E+F L LE+ +E+T AY DL + +L R G L L++ LA Sbjct: 5 LEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAA 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G ++ AR S+V+ + R DDP++ L PK + LP L + Q L+A Sbjct: 65 GTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAA 124 Query: 126 LID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 PL +RD+ ++E+LYATG+RVSEL GL + D+ + ++RV+GKGNK+R VP Sbjct: 125 ESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPY 184 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 GE A L +L GRP L S L R +++ + + G + + Sbjct: 185 GEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPD-I 243 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+ ATHLL GADLRVVQ LLGHS L+TTQ+YTHV RLR +H Q HPRA Sbjct: 244 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes RepID=A1ZPB9_9SPHI Length = 299 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 111/296 (37%), Positives = 190/296 (64%), Gaps = 4/296 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL--ATAQSDDLQALLAERL 63 + I++F L LE++L+EN+L AY D+ ++L GL++ A ++D ++ L+ Sbjct: 5 SYIKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLA 64 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + G A+S AR+LS ++ ++YL E+ E DPS ++ +P++ +++P LS ++E LL Sbjct: 65 KLGIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLA 124 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + P R++AM+EVLY++GLRV+EL+ L +S++ L G +R+IGK NKER VP+G Sbjct: 125 VIDLSTPEGARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGR 184 Query: 184 EAVYWLETYLEHGR-PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 EA +L +Y+E+ R + + D +F ++R +++R + IK A+LA I + +S Sbjct: 185 EAARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADI-KKNIS 243 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH RH+FATHL+ GA+++ VQ +LGH +++TT+IY + + LRQ + HPR+ Sbjct: 244 PHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPRS 299 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 146/298 (48%), Positives = 193/298 (64%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M I++ L++LWL+ L+ NTL +YRRDL + L G +A L Sbjct: 1 MMSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSD--- 57 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G K+TS AR LSA +R++ +L R D+P+ L +PK ++LP ++EAQ++ Sbjct: 58 SVYAEGEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDA 117 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP ++ LRDKA+LEV+YATGLRV+E V LT+SDI L +G +R IGKG+K RLVP Sbjct: 118 LLAAPDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 177 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+EA YW+E Y RP LL D +F SQ+ ++RQ W +K YA AGI S Sbjct: 178 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIAS-- 235 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHL+NHG DLR VQM+LGHSD++TTQIYTHVA RL+ + +HH R+ Sbjct: 236 LSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSRS 293 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 114/293 (38%), Positives = 182/293 (62%), Gaps = 5/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 IEQ+ + +KNL+ NT++AYRRD+ E+L +G L + + + + G Sbjct: 4 LIEQYFAEIR-KKNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKNG 62 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R + ++R F+YL + +D+P PK+ + P L+ +VE+LL P Sbjct: 63 RANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPD 122 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + +RDKAMLE++YATG++V+EL+ LT+ DI+L+ ++ G NKER++P+G AV Sbjct: 123 GNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAV 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 LE YL+ LN +ID LF + + +MTRQ FW IK YA +GI +K++ + L Sbjct: 183 KCLEIYLKVRTK--LNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGI-KKKINAYTL 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE-RLRQLHQQHHPRA 298 RH+FA HLL +GAD++ +Q LLGHSD++TTQIY+ + + R+ +++++ HPRA Sbjct: 240 RHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 117/302 (38%), Positives = 160/302 (52%), Gaps = 5/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M +E+F + L L+ + +T AY DL ++ + RG L L++ L+ Sbjct: 1 MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLS 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV-- 118 GG T+ AR SAV+ + R DP+A L PK + LP L + Q Sbjct: 61 AAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALG 120 Query: 119 --ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 P+ LRD+ ++E+LYATG+RVSEL GL + D+ + +VRV+GKGNK+ Sbjct: 121 AMAAAKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQ 180 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R VP G A L +L GRP L N S L R +++ + + + A Sbjct: 181 RSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQ-TIAAVS 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH LRH+ ATHLL GADLRVVQ LLGHS L+TTQ+YTHVA RLR +H Q HP Sbjct: 240 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 Query: 297 RA 298 RA Sbjct: 300 RA 301 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 163/295 (55%), Gaps = 4/295 (1%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 + + F + + E LAEN++ AY +D+ + + L + +L A + Sbjct: 2 DNAKLVSNFTNWMQYEMGLAENSVKAYHQDIENYIAFTLK---PLVECGAQELVAYMTHL 58 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G + R +S + R + +L EK +P ++ P ++LP L+ +VE+L+ Sbjct: 59 RKSGASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLI 118 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +P + L RD+ + E +Y+TG+R+SELVGL + D+ + + +++V GKG+K+R VP+ Sbjct: 119 NSPDMSSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMY 178 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 ++TYL+ L+ LF S+ +++ R+ W IK Y AGI + +S Sbjct: 179 GSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGI-KKNVS 237 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH LRH+FATHLL +GADLR +Q+LLGH DLSTT+ YT V + R HPR Sbjct: 238 PHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPR 292 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 11/299 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATA----QSDDLQALLAERL 63 E++ + L L + ++ +T++AY DL ++E+L T +++ LA L Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTL 66 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ++ AR +A+R + RE DP+A L+SP+ Q LP L E+ LL Sbjct: 67 ADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLN 126 Query: 124 APLIDQPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + +R+ A+LE+ YA GLRVSE+ L +S ++ VRV+GKGNKER+V Sbjct: 127 TARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNKERVV 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P G A L+ +L GRP L S + LF + ++ + + A AG+ Sbjct: 187 PYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGV--H 244 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+ ATHLL GADLR VQ +LGHS LSTTQ YTHV T RL ++Q+ HPRA Sbjct: 245 DIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 98/289 (33%), Positives = 161/289 (55%), Gaps = 4/289 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 + F+ + + +E+T AY RD+ ++++ G + L + Sbjct: 5 ELVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIE--GQAVHEVDRLMAYDYLNMLYDS 62 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 ++S AR +S +R +++L D+P + + + LP L ++E LL + Sbjct: 63 NLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLSC 122 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + L +R++ M+E++YA GLRVSE+V L + D+ L + +RVIGKGNKER + E Sbjct: 123 D-ESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYESL 181 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 V L +YL RP N + +F +QR + +T + H ++H AG+ + L PH+ Sbjct: 182 VPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMK-LHPHM 240 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 LRH+FATHLL++GA LRVVQ LLGH LSTTQIYTHV+ +++++++ Sbjct: 241 LRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019772C5 Length = 334 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 121/331 (36%), Positives = 172/331 (51%), Gaps = 43/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 + FL L + L+ NT+ AY D+ + L RG+ L +DDL+ +A Sbjct: 7 LSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRD- 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + +S AR + +VR F + + E DP+A L +PKLP LP L+EAQ ERL+ Sbjct: 66 HARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVD 125 Query: 127 IDQPL----------------------------------ELRDKAMLEVLYATGLRVSEL 152 D L LRD AMLE+LYATG+RV+EL Sbjct: 126 DDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAEL 185 Query: 153 VGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGV-----SID 207 VGL + D+ +RV GKG+K+R+VP G+ A L + EHGRP +L Sbjct: 186 VGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTA 245 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 LF R +++ ++ + A +G+ +SPH LRH+ ATH+L+ GADLR VQ + Sbjct: 246 ALFLGMRGRRIDQRIVRDVVHRAARESGVP--DISPHSLRHSAATHMLDGGADLREVQEM 303 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGHS L TTQ YTHV+ E+L++ ++Q PRA Sbjct: 304 LGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 17/307 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR----GLTLATAQSDDLQALLAERL 63 I +FL L E++L+ NTL AYRRDL WL G +++ +A Sbjct: 19 IGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLT 78 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S AR LSAVR +++++R++ + +P+ + SPKLP+ LP L Q E L+Q Sbjct: 79 RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138 Query: 124 APLID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + ++R+ AMLE+ Y++GLR+SEL G+ ++D+ L V+V GKG KER+V Sbjct: 139 HAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIV 198 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSI--------DVLFPSQRAQQMTRQTFWHRIKHYA 231 PLG+ A L YL + +F S+R +++ + H + Sbjct: 199 PLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLM 258 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 + L+ H LRH FATHL++ GADLR VQ LLGH+ +STTQIYTH + +RL++++ Sbjct: 259 SAVS-EGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVY 317 Query: 292 QQHHPRA 298 +Q HPRA Sbjct: 318 RQAHPRA 324 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 165/300 (55%), Gaps = 13/300 (4%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT----LATAQSDDLQALLAERLEG 65 +F+ L E+ L+ T+ AY DL E ++ T L+ +D ++ LA Sbjct: 24 RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALH-K 82 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 K TS AR LS +R + +L + ++P+A +A PKL ++P L V LL + Sbjct: 83 TRKKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSL 142 Query: 126 LIDQPLE------LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 R+ A+ E +Y+TG+RVSEL G+ SD+ +G+VRV+GKG+KER+V Sbjct: 143 NAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIV 202 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P+G +A+ ++ YL LF + R +++T ++ ++ G+ Sbjct: 203 PVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLW- 261 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + LSPH LRH FATHLLN GADLR +Q +LGHS+LSTTQ YTHV ++L +++ HPR+ Sbjct: 262 QHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRS 321 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 180/293 (61%), Gaps = 6/293 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 ++QFL+ + EK L+E T+ Y+ D++ + + L S+D++ L++ Sbjct: 4 ELLDQFLNYIKFEKRLSELTIKNYQNDINRL---ILINDKKLTEFNSEDIRLSLSKLHAS 60 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S +R+LS+ R F + + + + DP++ + +PK ++LP+ LS QV L+ P Sbjct: 61 GLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIP 120 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + ++ RD+A+LE Y++GLR+SELV + +SDI + ++V+GKGNK R+VPLG +A Sbjct: 121 QTN-FIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKA 179 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+ ++ R L V + LF +Q+ +++T + +R+K +A I E + PH+ Sbjct: 180 IEALDLWI-LQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIP-ENIHPHL 237 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+H+L DLR VQ LLGHS++STTQIYTH+ + L +++ Q HPR+ Sbjct: 238 LRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRS 290 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 7/294 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + QFL +L EKN + +T+ AY DL +L ++ L+ + G Sbjct: 10 VAQFLRSLK-EKNSSVHTIKAYTTDLEEFSAFLG--PAKWDDIDHVRIRGFLSHLYDKGL 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 S AR L+A+R L+++L RE F E +P+A +A+PKLP++LP+ + ++ ++ A + Sbjct: 67 SKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMP 126 Query: 128 DQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + RD + E+LY G+R SEL G+ + DI + + GKG KER VP G+ A Sbjct: 127 EAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPFGDAAA 186 Query: 187 YWLETYLEHGRPWLL-NGVSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + YL+ + L S + L + R Q++T ++ +K AV G+ ++ + PH Sbjct: 187 VAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPAD-VHPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRHAF THLL GADLR +Q LLGH L+TTQ YT ++T + +++ + HPRA Sbjct: 246 TLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPRA 299 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 116/305 (38%), Positives = 174/305 (57%), Gaps = 13/305 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 +E FL L E+ +E+T Y L + W + LT + L A L E Sbjct: 3 TLVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFERE 62 Query: 65 G-----------GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDL 113 + S ++A+R +++ EK + + L+ P+ +RLPK L Sbjct: 63 RLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKAL 122 Query: 114 SEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 S+ ++ +LL + + P L D+A+LE+ YA+GLR++EL + M + L G + VIGKG Sbjct: 123 SDLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGKG 182 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 NKER+VP+G +AV L+ YLE GRP L+ S +F + R T W RIK Sbjct: 183 NKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKR 242 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 +G+ + ++PH+LRH+FATHLL HGADLRV+Q LLGH+++STT+IYTHV+ RLR++H++ Sbjct: 243 SGV-ARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRK 301 Query: 294 HHPRA 298 HPR Sbjct: 302 FHPRG 306 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 160/311 (51%), Gaps = 23/311 (7%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEW-LHHRGLT--LATAQSDDLQALLAERL 63 I+ FL L ++ + T YR+ L W RG+ DD + L Sbjct: 31 WIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRFLG 90 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G + A+R +++L R P +++ PK+ +RLPK L+ Q+ LL Sbjct: 91 RGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVELLG 150 Query: 124 AP--------------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRV 169 AP I + RD A+LE +Y+ GLR+SEL GLT DI + +VRV Sbjct: 151 APLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLVRV 210 Query: 170 IGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQ--RAQQMTRQTFWHRI 227 GKG KER VP+GE A+ + Y G +F + +A ++ + R+ Sbjct: 211 RGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGG---SPVFLGETEKAAALSPRVLQQRL 267 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 K Y LAG+D L+PH LRH++ATH+L+ GADLR VQ LLGH+ L TTQ+YTHV+TERL Sbjct: 268 KKYLALAGLDP-SLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERL 326 Query: 288 RQLHQQHHPRA 298 ++ + HPRA Sbjct: 327 KRAYDSAHPRA 337 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 118/298 (39%), Positives = 178/298 (59%), Gaps = 13/298 (4%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 FL+ L +E+ LA N++ AYRRDL +L + +L+ S+ + E Sbjct: 14 SFLNHLQIERGLAANSIAAYRRDLVKFSIFLGSK--SLSEVDSNAINDFEISLREAKLSV 71 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-APLID 128 S R+ S +R F++L +E + DP+ +A K +RLPK L+ +Q+ ++ A Sbjct: 72 ASINRVDSTLRSFFKHLQQE-YGYADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREG 130 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSD---ISLRQG---VVRVIGKGNKERLVPLG 182 QP+ RD+AMLE+LY++G RVSEL+G+ ++D I G +++ GKG KER+VPLG Sbjct: 131 QPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPLG 190 Query: 183 EEAVYWLETYLEHGRPWLLNGVS--IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 A +E YL RP L + S LF + R +++RQ+ W + A AGI +E Sbjct: 191 SFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGI-TEH 249 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPHV RH++ATHLLN GAD+RVVQ LLGH+ ++TTQIYT + +++R+ + HPRA Sbjct: 250 VSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRA 307 >UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira RepID=XERC_LEPIC Length = 318 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 102/293 (34%), Positives = 174/293 (59%), Gaps = 7/293 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG-Y 67 ++F++ L +EKN ++NT+NAY DL E+ L + + D+++ A + Sbjct: 28 KKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLAKKHEI 87 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ--AP 125 S +R LS++R ++ L RE + +P+ L+ PK+ + +PK+ + E +L+ + Sbjct: 88 DRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESE 147 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + E+RD+AM+EVLY++GLRV ELV ++ +S V++V+GKG KER V G+EA Sbjct: 148 NASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEA 207 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 V L+ YLE+ + +F +QR +++T + + + G + + ++PH Sbjct: 208 VSSLQKYLEYRNVSFPDAEE---IFLNQRGKKLTTRGVRYILNERRKKMGWE-KTITPHK 263 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH FAT LL+ GA++R VQ LLGHS LSTTQIY V+ E++++++++ HP A Sbjct: 264 FRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHA 316 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 178/299 (59%), Gaps = 7/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA-QSDDLQALL 59 M+ + + I +F+ +L KN + +TL AY DL + ++ LT A L+ L Sbjct: 1 MESNASLINKFILSLQS-KNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYL 59 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 EG YK + R +S +R +YL + + +++P L PK + LPK L++ + + Sbjct: 60 GVTSEGDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETD 119 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RL+ L RDKA+ E++Y++GLR SE+ GL++ DI L GVVRV+GKG+KERLV Sbjct: 120 RLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+ + A+ L+ YL + S D LF ++ ++T + +K+ + A + + Sbjct: 180 PITDLAIEALKEYLSTRGVY----NSGDPLFLNRLGGRLTGDGLAYLVKNITIKANL-AR 234 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 K++ H LRH+FATH+LN+G DLR +Q +LGH LS TQ+YTHV+ +RL++++ Q HPR+ Sbjct: 235 KVTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRS 293 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 173/306 (56%), Gaps = 9/306 (2%) Query: 1 MKQDLAR-IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQA 57 + ++ A I++F+ + +E+ L++ T++AY DL WL + + T D+++ Sbjct: 14 IPEEFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIES 73 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 + E G + AR L+++ +++ + D SA + +PK LP LS + Sbjct: 74 YIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEE 133 Query: 118 VERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 V R+++A + +RD A+LE LYATG R+SE VG+ DI L + VV++ GKG+ Sbjct: 134 VNRVIEAAGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGS 193 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 K+RLVP+G AV L Y+E RP L + +F ++R ++RQ+ W + Sbjct: 194 KQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGE 253 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 A +D + L PH LRH+ ATHL+ GAD+R VQ LLGH+ ++TTQIYTH++ + L + + Sbjct: 254 RAKLD-KPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYV 312 Query: 293 QHHPRA 298 HPRA Sbjct: 313 MSHPRA 318 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 103/289 (35%), Positives = 159/289 (55%), Gaps = 5/289 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEW-LHHRGLTLATAQSDDLQALLAERLEGGY 67 + + LEK L+ENT+ +Y RDL + L + ++ ++ LA + G Sbjct: 13 RSYRVYIKLEKRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGR 72 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + TS AR LS +R + YL + P+ + +PK + LP L+ +++R++ A Sbjct: 73 EKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDT 132 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 RD AMLEVLY+ GLRVSEL L + D+ +G +RV GKG+K+RLVP+ A Sbjct: 133 STVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAARE 192 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 ++ YL+ + DV+F + R Q+TR + ++ AGID + +SPH R Sbjct: 193 KIQRYLDDR---ATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGID-KHISPHTFR 248 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 H+FATHLL GA +R VQ +LGH + TT+IYTH+ + LR +++ P Sbjct: 249 HSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLP 297 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 133/298 (44%), Positives = 175/298 (58%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + ++ I L L + + + T ++YR DL + +L A + LA Sbjct: 5 VTENEEMITGLLQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLA 64 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G K T+ R SA+ F +L + RED P+ HL + + LPK +SE VER Sbjct: 65 KLGRDGMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVER 124 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP + P+ LRD+ MLE+LYATG+RVSELV LT + + G++RVIGKG+KERL+P Sbjct: 125 LLAAPETEDPVGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIP 184 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 GEEA WL+ +L RP + LF + MTRQ FW RIK YA +AGI Sbjct: 185 FGEEAGQWLQQWL-LLRPA---KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLP 240 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRHAFATHLLNHGADLR VQMLLGH+ ++TT+IYTHV+ R+ L HP Sbjct: 241 -SPHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHPLG 297 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 111/292 (38%), Positives = 166/292 (56%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E+F+ L EK L+ + R+ L +L LA D L A L + G Sbjct: 5 LERFIRFLAAEKGLSTAYQLSVRQTLEEFARFLEMDNTGLAQTGIDTLSAFLRHLQDRGM 64 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S + +R F++L E DPS L P+ LP L + V LL++ I Sbjct: 65 ARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLESIDI 124 Query: 128 DQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 PL RD+A+LE++YA G+RVSE++ + + VRV+GKGNK RLVP+G A+ Sbjct: 125 QDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGRSAL 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YLE GRP L+ + +F + R + +TR+ ++ A AG++ + + PH+L Sbjct: 185 DALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLE-QHVFPHIL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR++Q +LGH+D+STTQIYTH+ +RL +H + HPR Sbjct: 244 RHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPRG 295 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 104/292 (35%), Positives = 172/292 (58%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +E+F + L E+ L+ +T Y+R L+ + E L + + ++ + ++ + G Sbjct: 10 LERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKGMRDG 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KA+S A LSA+R F +L + + +P+ +A+P+ + LPK+L ++ +LL Sbjct: 70 LKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLD-VN 128 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL +RD+AM+E++Y GLR++ELVG+ + ISL +G +RVIGKG+KER+VP A Sbjct: 129 DDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSGLAR 188 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+ +L+ L LF S+ +++ + R+ + + S ++PH L Sbjct: 189 EWVAKWLKLRDNIAL--AEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSS-HINPHKL 245 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L +++ + HPRA Sbjct: 246 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRA 297 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 + LA+I+ F+ + + L+ T+ AY + L +W + S DL++ LAE Sbjct: 8 SELLAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAE 67 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 G +T+ A LSA+R F++L R +PK + LP L+ ++ L Sbjct: 68 FRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAAL 127 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 AP + P+ LRD AMLE+ ATG R+SEL L + D+ + + V ++GKG+KER+VPL Sbjct: 128 FDAPDLSCPVGLRDAAMLELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPL 187 Query: 182 GEEAVYWLETYLEHGRPWLLN-----GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 A+ E YLE+GRP LL G + +F S R + M +R AGI Sbjct: 188 YARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGI 247 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 S+ ++PH +RH FAT LL GADLR VQ LLGH+ LSTTQIYTH+ +RL+ + HP Sbjct: 248 SSD-ITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHP 306 Query: 297 RA 298 R Sbjct: 307 RG 308 >UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria RepID=XERD_NEIMA Length = 291 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 142/297 (47%), Positives = 194/297 (65%), Gaps = 7/297 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M++ L I++ L+ LWL++ L +NTLN YRRDL + L G L A DL A + Sbjct: 1 MEEGL--IDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAV- 57 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G + +S AR LSA +RL+ ++ RE R D+P+ L PK+ + +P ++E Q+ R Sbjct: 58 --YVDGEQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISR 115 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP D P LRDKA+LE++YATGLRVSE VGL ++ L +G + +GKG+K+R+VP Sbjct: 116 LLAAPDTDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVP 175 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G+E+ YW+ Y RP LL G S D LF SQ+ ++RQ W +K YA AGI Sbjct: 176 MGQESAYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG--H 233 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +SPH LRHAFATHL+ HG DLRVVQ +LGH+DL+TTQIYTHVA L+ + ++HH R Sbjct: 234 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 105/274 (38%), Positives = 164/274 (59%), Gaps = 3/274 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA-TAQSDDLQALLAERLEGG 66 +E+F+ L K +++NT+ +YRRDL ++ RG+ A L + + G Sbjct: 5 VEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLEREG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A + +R+L++++ F Y E + + +P+ + +PK+ ++ P LS +V RLL P Sbjct: 65 KAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPG 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 P E+RDKAMLE+LYATG+RVSEL+ L + I++ G + G +ER +P G A Sbjct: 125 GRTPKEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSG-RERTIPFGRVAK 183 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YL++ RP L D LF + QM+RQ FW IK+Y AGI ++ ++PH L Sbjct: 184 KALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTD-ITPHTL 242 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYT 280 RH+FA HL++ GAD++ VQ +LGHSD++TTQ+Y Sbjct: 243 RHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 112/297 (37%), Positives = 167/297 (56%), Gaps = 8/297 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 + A ++ +L L E+ ++ T +Y RDL+ + E GL L + ++ +A+ Sbjct: 23 NHAYLQGYLAWLLGERRYSKLTAESYARDLAHLFEL--STGLALNELKVSHIRRYIAQLH 80 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S ARLLSA R + YL R+ D+P L +PK + LP+ LS Q R++ Sbjct: 81 SSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVD 140 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI--SLRQGVVRVIGKGNKERLVPL 181 P D P +RDKAM E+ Y++GLR+ EL+ L I + G VRV GKG+K R+VPL Sbjct: 141 LP-TDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPL 199 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G A+ L +L RP L N + LF R +++ + R+K + + GI S + Sbjct: 200 GGCAISALHEWLA-VRPTLAN-IGERALFVGARGARISPRVVQLRMKQWGIKQGITS-SV 256 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH+LRH+FATH+L DLR VQ +LGH+ +STTQ+YTH+ + L +++ HPRA Sbjct: 257 HPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRA 313 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 168/319 (52%), Gaps = 28/319 (8%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------LTLATAQSDDLQALL 59 +E FL L +N++ T+ AYR DL +L + + + D++ + Sbjct: 19 WLEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFM 78 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 L+ G + S AR L++V+ +++L P + + +P+L +++P+ +SE + Sbjct: 79 GHLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEAR 138 Query: 120 RLLQ----------------APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLR 163 +L + + Q RD+A+LEVLY GLR+SEL+ L +D+ L Sbjct: 139 QLFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLV 198 Query: 164 QGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPW----LLNGVSIDVLFPSQRAQQMT 219 G ++V GKG K+R+VPLGE AV L Y E R + L +F + R +Q+ Sbjct: 199 HGFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLY 258 Query: 220 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 K Y +SEK +PH+LRH+FATH+LN GADL+ V +LGHS L+TT++Y Sbjct: 259 PMLVQRMTKRYLTPVS-ESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELY 317 Query: 280 THVATERLRQLHQQHHPRA 298 THV RL++++ + HP A Sbjct: 318 THVTFSRLKEIYDKAHPGA 336 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 165/295 (55%), Gaps = 8/295 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I F D L E+ + +T+N Y L + + Q + ++ Sbjct: 20 ITLFSDYLKFERQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQGEHIRRYSMALRSKQL 79 Query: 68 KATSSARLLSAVRRLFQYLYREKFRED----DPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + + LS +R L+++L + + +P+ + PK + LPK+L Q+ RLL+ Sbjct: 80 SGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLE 139 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P D+PL +RDKAM+E++Y++GLR+SELVG + DIS G + V GKGNKERL+P+G Sbjct: 140 IPD-DEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGS 198 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +A+ L+ +L RP N + +F S + +++ + R++ + + GI S+ + P Sbjct: 199 KALNALKKWL-IIRPQFANPDEV-AVFLSSKKNRISVRQVRLRMQEWGIKQGISSQ-VHP 255 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FA+H+L DLR VQ LLGHS LS TQ+YTH+ + L +++ HPRA Sbjct: 256 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRA 310 >UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteobacteria RepID=XERD_AGRT5 Length = 331 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 137/317 (43%), Positives = 187/317 (58%), Gaps = 22/317 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 +D AR+E FL+ + E+ A NTL++Y DL+ + E+L RG +L AQ+ DL A L Sbjct: 9 RDGARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHL 68 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G+ ATS AR LS++R+ +++LY E R DDP+ + +P+ LPK +S A V RLL Sbjct: 69 AAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLL 128 Query: 123 QAPLIDQPLE-------LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 + E +R +LE+LYATG+RVSELV L + + + + GKGNK Sbjct: 129 GLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNK 188 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVS-------------IDVLFP-SQRAQQMTRQ 221 +R+V L A+ +E Y E GR L S LFP + + + RQ Sbjct: 189 DRMVLLSRAAIEAMEKY-EAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQ 247 Query: 222 TFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 281 F +K A+ AG+ + +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTH Sbjct: 248 VFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307 Query: 282 VATERLRQLHQQHHPRA 298 V ERL++L Q HHP A Sbjct: 308 VLEERLQELVQTHHPLA 324 >UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S5H6_PROA2 Length = 335 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 168/317 (52%), Gaps = 27/317 (8%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------LTLATAQSDDLQALLA 60 ++ FLD + LE++ + +T AYR D+ ++ ++ + A+ D++ + Sbjct: 20 LKGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLDVRLFMG 79 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E LE G + S AR L+AV+ + YL + + + +P+ + +P LSE + E+ Sbjct: 80 ELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLSERETEK 139 Query: 121 LLQA---------------PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG 165 L RD+A+LEVLY GLR+SE++GL +++L+ Sbjct: 140 LFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYENVNLQDS 199 Query: 166 VVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLL----NGVSIDVLFPSQRAQQMTRQ 221 ++RV GKG K+R+VPLG A L Y E R + +F +++ +++ Sbjct: 200 LLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKGRRIYPV 259 Query: 222 TFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 281 + Y A + + +PHVLRH+FATH+LN GADL+ V +LGH++L+TT+IYTH Sbjct: 260 LVQRVTRKYL-SAVTEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTTTEIYTH 318 Query: 282 VATERLRQLHQQHHPRA 298 V R+++++ + HP+A Sbjct: 319 VTFGRIKEVYLKAHPKA 335 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 107/308 (34%), Positives = 163/308 (52%), Gaps = 19/308 (6%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL---ATAQSDDLQALLAERL 63 IE FL + ++K +E T AY DL+ + E+L + + L T +QA LA Sbjct: 66 LIEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLF 125 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G +S AR L+A R F++ R ++ +A + +P+ +R P+ L+ + LL Sbjct: 126 RKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLD 185 Query: 124 APLI-------------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 + ++ + RD A+ E+LY +GLR+SE + L + D+ L V+RV+ Sbjct: 186 SATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVM 245 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 230 GKG++ERL PL + + L+ +LE LL LF R ++ R+ ++ Sbjct: 246 GKGSRERLAPLSDTSFSCLKAWLEER--PLLALPDEAALFVGARGARLNRREAARIVERL 303 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 AG+ +SPH LRH+FATHLL GAD+R VQ LLGH L+TTQ YT V+ E L Q Sbjct: 304 CRRAGLTF-TVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQT 362 Query: 291 HQQHHPRA 298 + Q HPR+ Sbjct: 363 YDQAHPRS 370 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 110/294 (37%), Positives = 158/294 (53%), Gaps = 10/294 (3%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 I+ F + L L + T+ YR DL M + + + L+ L ++ Sbjct: 24 TLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIE----DIDNFSLPTLRQWLGIAVDE 79 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-A 124 G + AR ++V+ + + + D +A L SPK+ + LPK L E Q ++ A Sbjct: 80 GKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDFVENA 139 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 ++ LRD A+LE+LYATG+RV+EL G+ +SDI + +VRV+GKGNKER+VP GE Sbjct: 140 ASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERVVPFGES 199 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A L +L+ LF R Q++ + + A + G+D LSPH Sbjct: 200 AHKALRNWLDVRDEM---TEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD--HLSPH 254 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH ATHLL+ GADLR VQ LLGHS + TTQIYTHV+ +RL + + HPRA Sbjct: 255 SLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLE 64 IE FL L +++ L+ T AY DL + +L RG +LA +QA LA Sbjct: 22 IESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLYA 81 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++ AR L+A R F+Y R E++ +A + +PK QR P+ L+ Q +L Sbjct: 82 LGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLDT 141 Query: 125 PL-------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 P L RD A+ E+LY +GLR+SE +GL ++D+ L + VVRV G Sbjct: 142 PDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVFG 201 Query: 172 KGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231 KG +ER+ PL + +V L +LE L LF R ++ R+ RI+ Sbjct: 202 KGARERMSPLSDTSVTALRAWLEQR--GTLAPEGEKALFVGARGGRLDRREAMRRIERLC 259 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 AG++ +SPH LRH+FATHLL+ GADLR VQ LLGH L+TTQ YT V+ ERL L+ Sbjct: 260 RNAGVEP--VSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLY 317 Query: 292 QQHHPRA 298 + HPRA Sbjct: 318 DEAHPRA 324 >UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular organisms RepID=XERC_RALPJ Length = 328 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 18/309 (5%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEW--LHHRGLTLATAQSDDLQALLAERLE 64 +I +LDAL E+ L+ +TL +Y R+L+++ H + L QS ++ ++A+ Sbjct: 18 QIAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHG 77 Query: 65 GGYKATSSARLLSAVRRLFQYL-YREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S AR LSA R F+++ R+ +P + +PK P+RLPK LS Q L++ Sbjct: 78 DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI-----------SLRQGVVRVIGK 172 D +RD+A+ E+ Y+ GLR+SELV L M + L V+V+GK Sbjct: 138 QLPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGK 197 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID---VLFPSQRAQQMTRQTFWHRIKH 229 G+K R VP+G +A L +L + + + LF S R +++ ++ R+K Sbjct: 198 GSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKR 257 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 A+ AG+ ++ + PHVLRH+FATH+L DLR VQ LLGH+ +++TQ+YT + + L + Sbjct: 258 NAIAAGVPAD-VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAK 316 Query: 290 LHQQHHPRA 298 ++ Q HPRA Sbjct: 317 IYDQAHPRA 325 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 102/293 (34%), Positives = 166/293 (56%), Gaps = 8/293 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 I +F++ L + + +TL AYR D+ ++ + + + A + +L+ LA+ Sbjct: 3 EAIRRFIEHLAVA-GRSPHTLAAYRADIELLENMMQAK--SARDATAAELRKALAKLHAQ 59 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G + S AR LS+ R+ + +L R RED+P+A L +PK + LPK L LL Sbjct: 60 GLSSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRI 119 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + L+ RD+A+ E++Y+ GLR+SE V L + D+ ++R+ GKG KERLVP+G EA Sbjct: 120 EGESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAEA 179 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L T+L G+ LF + ++ + R++ +A+ G + + PH+ Sbjct: 180 MLRLRTWLGER----SAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTG-AGQHVHPHM 234 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+H+L DLR VQ LLGH++LS+TQIYT + + L +++ HPRA Sbjct: 235 LRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRA 287 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 165/293 (56%), Gaps = 4/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQALLAERLEG 65 +E+FL + + NT+ YR+D++ ++++ + + +++ +A Sbjct: 14 LEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAYSNNN 73 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 S R +SA+R F YL + E + ++ PK + LP L++ + +L Sbjct: 74 EVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKLRNVI 133 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 I + +RD+ ++E LY++GLR SELV L+ I+L + VRV+GKGNKER+ E A Sbjct: 134 DISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFFSENA 193 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 W E Y+ R N + +++F + R +++T ++ I YA AGI+ E ++PHV Sbjct: 194 RKWYEKYISAKRNEYKN-YTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKE-VTPHV 251 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FAT LLN+ D+R +Q LLGHS +STTQ+YTHV+ LR+++ + HP A Sbjct: 252 FRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLA 304 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 118/297 (39%), Positives = 160/297 (53%), Gaps = 9/297 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 +E F L + + NT+ YR DL ++ H G TL + ++A LA+ G Sbjct: 22 VEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAG 80 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A + R SA R F++ E DP+ L S K+P+RLP L Q +L + Sbjct: 81 ASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAV 140 Query: 127 I-----DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + P RD A+LEVLY GLRV EL GL + D+ + V+V GKG+KER VP+ Sbjct: 141 AQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPM 200 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G A+ ++T+L W + S LF R +++ ++ + H + A DS L Sbjct: 201 GAPALRAIDTWLPRREEW-VGPHSGQALFLGARGRRIDQRVVRRVV-HTDLRAEPDSPDL 258 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRHA ATHLL GADLR VQ +LGH L+TTQIYTHV+TERLR +Q HPRA Sbjct: 259 GPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 322 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 123/309 (39%), Positives = 181/309 (58%), Gaps = 17/309 (5%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLE 64 +++ +LD L +E+++A NTL++YRRDL + L RG+ LA D+ L Sbjct: 8 TQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALRR 67 Query: 65 GG-------YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 G A S+AR L AVR L ++ E + D + + P +RLPK L+ + Sbjct: 68 GDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDE 127 Query: 118 VERLLQAP----LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 V LL++ D PL LR++A+LE+LY+TG R+SE VGL + D+ + V + GKG Sbjct: 128 VLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGKG 187 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNG----VSIDVLFPSQRAQQMTRQTFWHRIKH 229 K+RLVP+G AV L+ YL GR L ++ +F + R +++RQ+ W ++ Sbjct: 188 GKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQD 247 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 A AGI S +SPH+LRH+FATHLL GAD+RVVQ L+GH+ ++TTQIYT V + LR+ Sbjct: 248 AAEHAGITS-GVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALRE 306 Query: 290 LHQQHHPRA 298 + HPRA Sbjct: 307 VWAGAHPRA 315 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 131/335 (39%), Positives = 182/335 (54%), Gaps = 38/335 (11%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA 60 + +A + +LD L +E+ +A NT+ +YRRDL+ +++L G T +A + D+ L Sbjct: 18 PELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVADVTAADVSDFLV 77 Query: 61 ERLEGG-----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 G A+S+AR + A R ++L E E DPS + P +RLPK L Sbjct: 78 CLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRLPKALPV 137 Query: 116 AQVERLLQAP---LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG------- 165 + RLL A D P LRD+A+LE+LYATG R+SE+VGL + DI L G Sbjct: 138 EAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDDIDLGPGRLAGRSS 197 Query: 166 -----------------VVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV 208 VVR+ GKG KERLVP+G A+ LE YL GRP L Sbjct: 198 TDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVLAAAGRGAG 257 Query: 209 -----LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRV 263 LF + R +++RQ+ W + A AG+ + +SPH LRH+FATHLL GAD+R Sbjct: 258 PARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRS 317 Query: 264 VQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VQ LLGH+ ++TTQIYT V + LR+++ HPRA Sbjct: 318 VQELLGHASVTTTQIYTLVTVDALREVYVTAHPRA 352 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 162/293 (55%), Gaps = 9/293 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 RI + +L L + +T +AYRRDL + + AT + ++ +A G Sbjct: 26 RIAGYDQSLQLA-GKSPHTRSAYRRDLQALAALQGAQ--DPATLTAQQIRLAVARLHAKG 82 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP- 125 + S AR+LSA R F +L ++ +P + PK P+ LPK L LL AP Sbjct: 83 HIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKALPVDATSALLDAPI 142 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + L LRD+AM E+LY+ GLR+SEL GL ++D+ L +G++ GKGNK R++P+G +A Sbjct: 143 DPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLGEGLLTAHGKGNKTRILPIGRQA 202 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 LE +L + +F + ++++ + R++ +A G D + PH+ Sbjct: 203 RQALERWLAIR----PSQPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHGSD-RHVHPHM 257 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+HLL DLR VQ LLGH++LSTTQIYT + + L +++ HPRA Sbjct: 258 LRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRA 310 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 115/311 (36%), Positives = 173/311 (55%), Gaps = 17/311 (5%) Query: 2 KQDL----ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---------LTLA 48 KQDL + + ++L L ++L+ T + YRRDL +V + ++L Sbjct: 7 KQDLPALPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLT 66 Query: 49 TAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQR 108 S D++ +A G S AR+LSA R ++YL R +P + PK P + Sbjct: 67 RLHSHDIRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHK 126 Query: 109 LPKDLSEAQVERLLQ-APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 LP LS + +LL P + L RD A+ E+ Y++GLR++EL L +DI G V Sbjct: 127 LPHALSPDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTV 186 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 RV GKGNK R+VP+GE A+ L+ +L WL+ G + LF SQR +++ +T +R+ Sbjct: 187 RVTGKGNKTRIVPVGELALRALQAWLPLRSAWLIPGET--ALFLSQRGRRIHPRTIAYRL 244 Query: 228 KHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERL 287 A L +DS ++ PH LRH+FA+HLL DLR VQ +LGHS + +TQ+YTH+ + L Sbjct: 245 HQRAQLQNLDS-RVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHL 303 Query: 288 RQLHQQHHPRA 298 +++ Q HPRA Sbjct: 304 AKIYDQAHPRA 314 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 161/316 (50%), Gaps = 23/316 (7%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH------RGLTLATAQSDDLQAL 58 L +++F D L E+ L+ +T YRRDL + LA D + A Sbjct: 3 LPYLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAF 62 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L G T+ R ++A+R F Y+ RE +P+A ++SPK P+RLP+ S Q Sbjct: 63 LGRGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQT 122 Query: 119 ERLLQ-------APLIDQP--------LELRDKAMLEVLYATGLRVSELVGLTMSDISLR 163 LL +P LRD A+LE+LY+ GLR+SE L +D+ LR Sbjct: 123 LNLLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLR 182 Query: 164 QGVVRVI-GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQT 222 G +RV GKG K+R+VPLG AV +E +L+ + +F Q +++ + Sbjct: 183 GGELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSRE 242 Query: 223 FWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV 282 ++ + + E ++PH LRHAFATHLL GADLR +Q ++GH+ LS TQ YTH+ Sbjct: 243 GQRLLEKWRARLDLP-ESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHL 301 Query: 283 ATERLRQLHQQHHPRA 298 + L +++ HPRA Sbjct: 302 DMQALAKVYDAAHPRA 317 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 3/301 (0%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M Q A + FL+ + +E+ A NTL AY +DL +L G L A ++ ++A Sbjct: 1 MSQGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQ 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G ++AR SAVR+ ++++ E +R DDPS +A+PK + LPK L ++ER Sbjct: 61 DLGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIER 120 Query: 121 LLQAPLI-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL A D LR M+E++YA+GLR+SEL+ L + ++ + V GKG KERL Sbjct: 121 LLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLA 180 Query: 180 PLGEEAVYWLETYLEHGRPWLLNG-VSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGID 237 PL + A ++ YL +L G LFPS+ A ++T + ++ A+ AGID Sbjct: 181 PLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGID 240 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +K+SPHVLRHAFATHLL GADLRV+Q LLGH+D++TTQIYTHVA E L + Q HP Sbjct: 241 RQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPL 300 Query: 298 A 298 Sbjct: 301 G 301 >UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID=B2GFZ3_KOCRD Length = 378 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA-QSDDLQALLAERLEG 65 + +F L LE++ +ENT+ +Y D++ + W+ G+ A D L+ LA+R + Sbjct: 78 YLPEFRAHLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQR 137 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA- 124 G +S +R ++AV F++ + DP+A L P+ + LP + + +L A Sbjct: 138 GLARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDAL 197 Query: 125 ---------PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 D L RD A+LE+LYATG R+SELVGL + + Q V+ + GKG+K Sbjct: 198 GDVALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDK 257 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R VP GE A L + EH RP L + D +F R ++ + + Sbjct: 258 QRRVPYGERAGDALAVW-EHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDV- 315 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 D+ PH LRH+ ATHLL+ GADLR VQ LLGH+ ++TTQIYTHV+ ER+++ + Q H Sbjct: 316 PDTSARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAH 375 Query: 296 PRA 298 PRA Sbjct: 376 PRA 378 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 166/295 (56%), Gaps = 5/295 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + F + L +E+N + T AY DL + L T D+ A G Sbjct: 6 LTAFFEMLSVERNASPRTREAYGHDLLDLRNHAGIDADGLLTLNEGDIAGFFAALDARGL 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +++ R +AVR+ +++ RE ++DPS +A+ K + LPK LS +V+ L+ A Sbjct: 66 ASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADA 125 Query: 128 DQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 R + ++E+ YA+G+RVSE+V L + + + V GKG ERLVPL A Sbjct: 126 KDAHQATRLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSAR 185 Query: 187 YWLETYLEHGRPWLLNGVS--IDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 ++ YL+ RP LN LF S+ A +TR+ + A+ AGID ++SP Sbjct: 186 AAIKDYLD-IRPLFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HVLRHAFATHLL GADLRVVQ LLGH+D+STTQ+YTHVATERL+++ + HHP + Sbjct: 245 HVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLS 299 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA 60 L +++ +LD L + + +T AYRRDL + L A + ++A + Sbjct: 3 PDSLEQLDDYLDRLA--RRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYVG 60 Query: 61 ERLEGG-YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 R G A S RLL+A+R F L +++ + +P+ + P+ +RLP+ L V Sbjct: 61 TRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVA 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI-GKGNKERL 178 LL AP D LE RD+AM E+ Y++GLR+SELVGL + D+ G V V GKG K R Sbjct: 121 GLLDAP-ADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARY 179 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VP+G +A+ + +LE R +L G LF S++ +++ +T R++ + G+ S Sbjct: 180 VPVGAKALEAIGAWLEARR--VLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGL-S 236 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 E++ PH+LRH+FA+H+L DLR VQ LLGH+ L+TTQIYTHV +RL ++ Q HPRA Sbjct: 237 ERVHPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRA 296 >UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteriaceae RepID=XERC_BIFLI Length = 355 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 119/349 (34%), Positives = 169/349 (48%), Gaps = 61/349 (17%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+ F+ L + L+ NTL AYR DL+ + RG+T L DDL++ +A Sbjct: 10 IDSFVSYLKSNRGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMA-VESRD 68 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + +S AR AVR F + Y DP+A L +P +P LP L+E+Q E+LL Sbjct: 69 HARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLDVAE 128 Query: 127 ID--------------------------------------------------QPLELRDK 136 R+ Sbjct: 129 HAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNA 188 Query: 137 AMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHG 196 A+LE+LYATG+RV+ELV + ++DI ++V GKGNK+R+VP G A LET+LE G Sbjct: 189 AILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQG 248 Query: 197 RPWL-------LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 RP L + + + LF R ++ ++ + A AG+ +SPH LRH+ Sbjct: 249 RPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP--DISPHALRHS 306 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ATH+L+ GADLR VQ +LGHS L TTQ YTHV+ E+L+ + Q PRA Sbjct: 307 AATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGY7_KYTSD Length = 336 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 117/331 (35%), Positives = 170/331 (51%), Gaps = 38/331 (11%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 L +E F D L LE+ + +T+ AY DL+ + E L G T DL++ A R Sbjct: 7 LREVEGFADHLLLERGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAARRA 66 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ++ AR ++ R F ++ + DPSA L SP++ +RLP L Q +L++ Sbjct: 67 AAGLARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQLVE 126 Query: 124 ------------------------------------APLIDQPLELRDKAMLEVLYATGL 147 A + +LRD+A+LE+LYATG+ Sbjct: 127 GGGTRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYATGI 186 Query: 148 RVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID 207 RV ELV L +SL+ VRV GKG+KER+VP G A+ LE ++ GRP LL S + Sbjct: 187 RVGELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGARSGE 246 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 LF R ++ + + A + + PH LRH+ ATH+++ GAD+R VQ L Sbjct: 247 ALFLGVRGGRIDPREVRRVVHRAAQRVE-GAADIGPHGLRHSAATHMVDAGADIRSVQEL 305 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGH+ L+TTQ+YTHV+ ERLR+ + HPRA Sbjct: 306 LGHASLATTQVYTHVSVERLREAFDRSHPRA 336 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 161/293 (54%), Gaps = 9/293 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 +I +F+ L +E+ A NT AY RDL ++ + + + A+ S++L + Sbjct: 4 QINRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMRHQ 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 + R LS++R YL + E + + L SPK+ + LPK L ++ ++L P Sbjct: 64 NISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML-TP 122 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 ELRD AM+EVLY+ GLRVSELVGL + D+ QG +RV+GKG+K R PLGE A Sbjct: 123 KSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGESA 182 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + YL+ + LF + R ++++ +T + IK+ A+ GI + PH+ Sbjct: 183 QKSINRYLQK------TSHTNKALFVNNRQERISTRTVQNIIKNRALSVGI-KVNVHPHM 235 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRHA ATH L DLR VQ LGH + +TQ+YTH+ L +++ + HPRA Sbjct: 236 LRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRA 288 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 320 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 106/294 (36%), Positives = 159/294 (54%), Gaps = 10/294 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 ++ FLD L + T+ +Y +DL +WL RG+ L + D++ ++ L Sbjct: 8 AVKVFLDDAAL--RFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHASDLLAK 65 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G +S AR LS +R ++ + + ++ PK +RLP+ L E +V L+ Sbjct: 66 GAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAALIDHV 125 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D + LRD+A+LE LYATG+RVSE V L + D+ L G RV+GKG +ER V +G A Sbjct: 126 GGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVMVGRRA 185 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA-GIDSEKLSPH 244 V L YL P +F ++R ++T ++ ++ G+ + H Sbjct: 186 VDALRRYL----PLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGL--RSIHVH 239 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATH+LN GADLR VQ LLGH+ LS+TQIYTH + E+L + + HPRA Sbjct: 240 GLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPRA 293 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 111/282 (39%), Positives = 154/282 (54%), Gaps = 2/282 (0%) Query: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 + AE T +AY D V W L A L+ A E G T+ R L++ Sbjct: 32 RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRALRRYAAGLTEAGQAPTTVGRKLAS 91 Query: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 +R LF+ L + +P+ L++P+ QRLP L +V LL D L LRD+A+ Sbjct: 92 LRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTALALRDRAL 151 Query: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 E+ YA+GLR ELV L + I VRV GKG K R+VP GE A+ + YL+ RP Sbjct: 152 FELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALKAIARYLDRARP 211 Query: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL-AGIDSE-KLSPHVLRHAFATHLLN 256 L S LF S+ ++++ R++ +A AG+ + +SPH LRH+FATHLL Sbjct: 212 ALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHLLE 271 Query: 257 HGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +GADLR +Q LLGH+ +STTQ+YT V + RLR + HPRA Sbjct: 272 NGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHPRA 313 >UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desulfovibrio RepID=Q311L4_DESDG Length = 332 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 155/304 (50%), Gaps = 17/304 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLEG 65 E ++ L LEK + T+ Y DL+ ++L R ++L + LA+ Sbjct: 20 EMYMGYLALEKGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHRQ 79 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 +S R LSA+R F+YL R+ F P+ + +P+ QR P+ L+ Q +L Sbjct: 80 HVGKSSMGRKLSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTR 139 Query: 126 LIDQPLE-------------LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 RD A+ E+LY +GLR+SE + L + G+++V GK Sbjct: 140 TQAASRAQVHVRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGK 199 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 G+KER+VPL + + L+ +L+ ++G + +F R ++ R+ I+ Sbjct: 200 GSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLCR 259 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG+ + +SPH LRH+FATHLL GAD+R VQ LLGH L+TTQ YTH+ ++ +++ Sbjct: 260 AAGLP-QAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYD 318 Query: 293 QHHP 296 + HP Sbjct: 319 RAHP 322 >UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales RepID=XERC_CHLFF Length = 312 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 21/308 (6%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------------------LTLATA 50 FLD L K + +TL Y DL+ +L G L + Sbjct: 7 AFLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLF 66 Query: 51 QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 110 D ++ + E ++ + R LSA++ Y + + +DP+ + P+LP+ LP Sbjct: 67 TKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELP 126 Query: 111 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 ++ QVE L+ P + + LRD+ +LE+ Y++GLR+SE+V L DI ++R+ Sbjct: 127 SPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIR 186 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 230 GKG KER++P+ A WL+ YL H +F + ++T ++ + + Y Sbjct: 187 GKGKKERIIPITTLAAQWLKQYLNHP-ERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKY 245 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 L+G+ ++PH +RH ATH L +G DL+ +Q LLGHS L TT IYTHV+ + +Q Sbjct: 246 LRLSGLSG-NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQT 304 Query: 291 HQQHHPRA 298 H + HP Sbjct: 305 HNESHPHG 312 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 106/294 (36%), Positives = 169/294 (57%), Gaps = 13/294 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A + FLD L + L+ T+ AYR DL ++ L H ++ + ++A L + Sbjct: 23 AILMDFLDELTYSRRLSGATVRAYRADLMPLLAGLDH----ISELSTPVIRAHLGAKHAE 78 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G +S ARL +++R+ +L + + DPS L++PK Q LP+ LS +VE ++ Sbjct: 79 GAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKV 138 Query: 126 LI-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D + RD A++E+LYATG+RV EL +SD++ + ++ V+GKG+K+R+VP G Sbjct: 139 SSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAP 198 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A L+ +L+ + + + LF R ++ + I +A +SPH Sbjct: 199 AEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA--------DVSPH 250 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+ AT ++ GADLRVVQ +LGHS L+TTQIYTHV+ +RLR++H++ HPRA Sbjct: 251 ALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0Y3M6_9CAUL Length = 313 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 175/300 (58%), Gaps = 8/300 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++ FL+ + +E+ A NTL AY +DL +L L A ++ ++A + G Sbjct: 8 WVDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARG 67 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++AR SAVR+ ++++ E +R DDPS +A+PK + LPK L A++ERLL A Sbjct: 68 LSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAAT 127 Query: 127 I------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 D LR ++E++YA+GLR+SEL+ L ++ ++ + V GKG KERL P Sbjct: 128 APNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAP 187 Query: 181 LGEEAVYWLETYLEHGRPWLLNG-VSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDS 238 L + A + YL R +L G LFPS+ ++T + + A+ AGID Sbjct: 188 LNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDR 247 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +K+SPHVLRHAFATHLL GADLRV+Q LLGH+D++TTQIYTHVA E L + Q HP Sbjct: 248 DKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHPLG 307 >UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB85_BRAFD Length = 332 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 121/325 (37%), Positives = 170/325 (52%), Gaps = 31/325 (9%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAER 62 D A ++ F D L LE+ +E+T+ AYRR+ + ++ L +TL L++ L+ R Sbjct: 9 DDAVLDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSAR 68 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E G A++ AR ++VR +L D L +P+ + LP L+ Q LL Sbjct: 69 AETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELL 128 Query: 123 Q------------------------APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMS 158 D+ + LRD A+LE+LY++GLRVSELV L S Sbjct: 129 DGLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRS 188 Query: 159 DISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNG-----VSIDVLFPSQ 213 I + G VRV GKG++ER+VP+G A+ L+ + GRP LL D LF Sbjct: 189 RIDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGV 248 Query: 214 RAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDL 273 R ++ + + + AGI S ++PH LRH+ ATHL+ GADLR VQ LGHS L Sbjct: 249 RGGRLGDRAVRTLVDRHVAEAGI-SRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSL 307 Query: 274 STTQIYTHVATERLRQLHQQHHPRA 298 +TTQIYTHV+ ERLR+ Q HPRA Sbjct: 308 ATTQIYTHVSAERLRRTVDQAHPRA 332 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 12/299 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLA 60 A + +L+ + E +E+T+ AYRRDL + L G D A L Sbjct: 37 AHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAALR 95 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G A + AR LS+ R+ +L + DP+A ++ PK PQR+PK L + + R Sbjct: 96 RLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLNR 155 Query: 121 LLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P PL +RD A+ E++Y +GLRVSE+ GL D+ L + V V GKG K+R V Sbjct: 156 MLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PL ++ L+ YL P LF + +++++ R+ +A + G D Sbjct: 216 PLTGKSAEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAING-DGR 270 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH++RH++A HLL D+R VQ LLGHS LSTTQIYT + + + +L+ + HPRA Sbjct: 271 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 329 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 161/298 (54%), Gaps = 15/298 (5%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL---TLATAQSDDLQALLAERLEGGY 67 F + L E+ + T+ YR+ WL G+ Q +L+ + E + + Sbjct: 32 FENYLAHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIE-AQRRF 90 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL- 126 + +S +R F++ R + +P + PKL +RLPK L+E Q+ RLL P Sbjct: 91 GRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGPQQ 150 Query: 127 ------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 ID RD+ +LE+LY GLRVSEL GL I L GV R++GKG KERL P Sbjct: 151 LLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERLCP 210 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G AV L + + P + +QR +M+ + +K Y LA + + Sbjct: 211 IGRVAVAVLRKFRDEFAPATAPDA---PVIVTQRGTRMSPREVQLMLKRYLALAELPMD- 266 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 L+PH LRH++ATHLLN GADLR+VQ LLGH+ L+TTQ+YTHV+ RL++++ + HPRA Sbjct: 267 LTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepID=Q2J882_FRASC Length = 443 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 127/322 (39%), Positives = 177/322 (54%), Gaps = 33/322 (10%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 IE++L L E+ LA N++ AYRRDL + L GL +L ++ A G Sbjct: 93 IERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFAAVLRTGD 152 Query: 67 -----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 A S AR+L AVR L ++ E +D S + P P+RLPK LS QV + Sbjct: 153 DTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSIDQVVAV 212 Query: 122 LQAP-------------------------LIDQPLELRDKAMLEVLYATGLRVSELVGLT 156 L A + LR A+LE+LY TG R+SE VGL Sbjct: 213 LAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISEAVGLD 272 Query: 157 MSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQ 216 + D+ L VR+ GKG ++R+VPLG A+ + YL GRP L+ S +F S+R Sbjct: 273 VDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVFLSRRGN 332 Query: 217 QMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT 276 +++RQ+ W ++ A+ AG++ +SPHVLRH+FATHLL+ GAD+RVVQ LLGH+ +STT Sbjct: 333 RLSRQSAWSVLRTAALAAGVEG--VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTT 390 Query: 277 QIYTHVATERLRQLHQQHHPRA 298 QIYT V +RLR+++ HPRA Sbjct: 391 QIYTLVTVDRLREVYAASHPRA 412 >UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroidales RepID=B6YR66_AZOPC Length = 299 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 152/297 (51%), Gaps = 7/297 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERL 63 ++ FL L E+N + TL Y DL ++ G + T S ++ + + Sbjct: 7 FNQLSIFLCHLRYERNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLM 66 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL- 122 + Y S R LS +R F+YLYR E +P + + + LP + + ++ LL Sbjct: 67 DRNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLL 126 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + + RD+ +LEV Y+TG+R SELVGL DI ++RV GKGNK+RL+P Sbjct: 127 DLSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFS 186 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS-EKL 241 + L Y + + F + + + + +K L+ I + K Sbjct: 187 KTLEEILSYYKTIRDETIWDV--SKAFFVREDGRSLNYNIVYRIVKK--RLSDIPNLPKR 242 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPHVLRH FAT +LN+GA+L V+ LLGHS L++T+IYTH+ E L++ ++Q HPRA Sbjct: 243 SPHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 170/295 (57%), Gaps = 8/295 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 ++ I+ FLD L KN ++ T+N YRRDL + + + +T +++D+ + + Sbjct: 3 NIEHIDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDIT--KLENNDILMWVKKLH 60 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G + + R LS++R F +L + +++P+ + +PK ++LPK ++ ++ LL Sbjct: 61 AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 +E RD A ++LY+ G+R+SEL + + DI++ Q +RVIGKGNKER+V G Sbjct: 121 -IKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGS 179 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + + L +L + + LF SQ + +T ++ RI+ +A ++ + P Sbjct: 180 KTLINLNRWLNTRDTY---SPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYA--TKHIHP 234 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FATH+L+ DL V+ LLGH+D+S+TQIYTH+ ++L + + HPRA Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRA 289 >UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NTN2_9MICC Length = 422 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 158/300 (52%), Gaps = 10/300 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +++F L EK+ +E T+ +Y DL ++ RG+ L + + ++ L Sbjct: 124 LDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSLHLRQ 183 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ R S +R F + E+ +P+ + +PK LP LS Q+ +LL Sbjct: 184 AARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQ 243 Query: 127 IDQPLELRDK------AMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 + + RD A++EVLYA+G+R+SEL GL + + VRV+GKGNKER+VP Sbjct: 244 ERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVP 303 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 LG A+ L ++ +GRP + S LF R + + + ++ Sbjct: 304 LGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVE-NT 362 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + HVLRH+ ATHL++ GAD+R VQ LLGHS L+TTQIYTHV+ +RL + + + HPRA Sbjct: 363 QASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 422 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 158/291 (54%), Gaps = 8/291 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 + FL +E+ L+ +T +Y + L + AQ+ + L E Sbjct: 8 QSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTA--RRYLYVLYEKQLA 65 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 A++ ++ +S ++ +++ RE+ E L SPK Q LP +VE+LL+A Sbjct: 66 ASTVSQKVSCFKQFGKFMAREQGGEP-LFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQ 124 Query: 129 Q--PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 L+ RD A++EVLY TG+RV+EL G+ +S V V+GKG KER VP+G+ AV Sbjct: 125 DDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIGQYAV 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ Y+E + + + LF SQ+ +MT + +K +G+ + L+PH L Sbjct: 185 QALQRYIELRKG--VGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGV-HKPLTPHSL 241 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FAT LL GADLR VQ LLGH LSTT YTHV+TERLR ++Q HPR Sbjct: 242 RHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1G4_9MICC Length = 358 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 159/300 (53%), Gaps = 10/300 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +++F L EK+ +E T+ +Y DL ++ RG+ L + + ++ L Sbjct: 60 LDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSLHLRQ 119 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ AR S +R F + E+ +P+ + +PK LP LS Q+ +LL Sbjct: 120 AARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLLTTLQ 179 Query: 127 IDQPLELRDK------AMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 + + RD A++EVLYA+G+R+SEL GL + + VRV+GKGNKER+VP Sbjct: 180 ERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVP 239 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 LG A+ L ++ +GRP + + LF R + + + ++ Sbjct: 240 LGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTVE-NT 298 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + HVLRH+ ATHL++ GAD+R VQ LLGHS L+TTQIYTHV+ +RL + + + HPRA Sbjct: 299 QASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 358 >UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella RepID=C5VK74_9BACT Length = 294 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 101/294 (34%), Positives = 162/294 (55%), Gaps = 6/294 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 +E+FLD + E+N + T+ YR+DL+ + L+ + SD ++ + ++ Sbjct: 4 VEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMDR 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A+S R LSA+R +++ R K E DP L PK + LP+ L E+++ERLL + Sbjct: 64 GNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDSK 123 Query: 126 L-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + D ++ ++ ++ Y TG+R+SEL+GL DI ++V GK NK+R+VP G+E Sbjct: 124 MWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGKE 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 Y + R + G F +++ ++MT +K ++ SPH Sbjct: 184 LADVFAQY-QEVRNATVKG-DSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKR-SPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VLRH FAT +LNH A L V+ LLGH LSTT+IYTH E+L+++++ HPRA Sbjct: 241 VLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacteraceae RepID=C7JEV7_ACEP3 Length = 306 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 136/299 (45%), Positives = 181/299 (60%), Gaps = 13/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL+ L E+ A NTL AY DL+ E L G TL TA ++ LQ +A + G Sbjct: 6 VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP-- 125 + AR LS +R+ + +L RE R D+P+AHL SPK LP+ LSE++V LL A Sbjct: 66 ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAE 125 Query: 126 -----LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L + + KA LE+LYA+GLR+SEL+ L I+ Q ++ V GKG +ERLVP Sbjct: 126 PAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAGIDSE 239 L + A + LE + + LFP + A+ MTRQ F + A+ A ID Sbjct: 186 LSDSAREAAQALLE-----VDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPA 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LSPHVLRH+FATHLL HGADLR +QMLLGH+D++TTQIYTHV TERL++ Q HHP A Sbjct: 241 RLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLA 299 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 160/302 (52%), Gaps = 16/302 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGY 67 + +L + AE T+ +Y DL V+++ + + +Q L + Y Sbjct: 8 QDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYLRQDHY 67 Query: 68 -----------KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + S +++++ +YL + +P ++ + K Q LP + Sbjct: 68 DEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPVYFNMQ 127 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 +ERLL + D E+ DKA++E+LY GLRVSE L + + L QG +RVIGKGNKE Sbjct: 128 DIERLLDS-FRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGKGNKE 186 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R+VP+ LE YL R + +F + + Q++TRQ IK + G+ Sbjct: 187 RMVPMHARCKKALENYLTKVRKQ--RYARSNFVFINAKGQEITRQYIHVMIKKRLLALGL 244 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 D E+LS H RH+FA+HLL+ GADLRVVQ LLGHSD+STTQIYTHV +RL+ ++ HP Sbjct: 245 D-ERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHP 303 Query: 297 RA 298 RA Sbjct: 304 RA 305 >UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadaceae RepID=Q0C629_HYPNA Length = 309 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 128/308 (41%), Positives = 181/308 (58%), Gaps = 19/308 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 D +RI FL+ + E+ + NTL+AY RDL E+ H R L TA S DL A LA+ Sbjct: 2 DDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFCHLR---LVTASSSDLSAWLADL 58 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G ++ AR LSAVRR F++L++E R+DDP+A L P + +P LS +V RL+ Sbjct: 59 AARGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLI 118 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV------VRVIGKGNKE 176 +A D+ R K ++E+LY GLR +ELV L + ++ R+ + + GKG K+ Sbjct: 119 EACGNDK----RLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKD 174 Query: 177 RLVPLGEEAVYWLETYLEHGR-----PWLLNGVSIDVLFPSQ-RAQQMTRQTFWHRIKHY 230 RL PLG A+ L +LE L+ +FPS+ + +TR+ ++ Sbjct: 175 RLCPLGRAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDL 234 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 A AG+ SE++ PH LRHA+ATHLL GADLRVVQ LLGH+D++TTQIYTHV T+ L +L Sbjct: 235 AGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAEL 294 Query: 291 HQQHHPRA 298 + HP A Sbjct: 295 LETAHPMA 302 >UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga RepID=C7M6X5_CAPOD Length = 307 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 166/299 (55%), Gaps = 10/299 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL----HHRGLT--LATAQSDDLQALLAE 61 I F+ L +E +++T+ AY+ DL +++ +G L A +D++ + Sbjct: 3 INAFIIYLSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIH 62 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAH-LASPKLPQRLPKDLSEAQVER 120 + S R LSA++ + +L + K E P + K ++ SEA++E+ Sbjct: 63 LSDETISFRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEK 122 Query: 121 LLQA-PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L D E+R++A++E LYATG+R SEL GL +SD+ Q ++V+GKG+KER + Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+ E L+ YL R + N S D LF + +++ + I Y + + Sbjct: 183 PIIPELENTLKEYL-VLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVV-TTKK 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPHVLRH+FA+HLL++GADL V+ LLGHS L++TQ+YT+ + L++ +++ HPRA Sbjct: 241 DVSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRA 299 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 159/313 (50%), Gaps = 19/313 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMV------EWLHHRGLTLATAQSDDLQ 56 +D A + F L EKN + +T AY D+ + E + + L + + Sbjct: 6 KDNALL-AFFKYLKTEKNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAK 64 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + E + R S++R L+ + RE+ + +P + + K + LP LS Sbjct: 65 GYIFSLQESKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSRE 124 Query: 117 QVERLLQAPLI---------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 + LL +P + + RD A+LE++Y+ GLR+ E + + I+L + + Sbjct: 125 DISTLLSSPAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTL 184 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLN-GVSIDVLFPS-QRAQQMTRQTFWH 225 ++ GKG K+R LG A LE Y + LN + D +F + + ++++ ++ Sbjct: 185 KIFGKGKKQRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQR 244 Query: 226 RIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 285 +K Y + + ++PH LRH+FATHLL+ GADLR VQ LLGH +LSTTQIYTH++T+ Sbjct: 245 NLKAYLQSCQLPPD-ITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTD 303 Query: 286 RLRQLHQQHHPRA 298 RL Q + Q HP A Sbjct: 304 RLLQAYDQAHPHA 316 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 160/298 (53%), Gaps = 12/298 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDL---QALLAERL 63 +I +L+ L N +E+++ AY DL + +L L + DL + LA Sbjct: 12 QIVLYLEDLARAGN-SEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLILREWLAGLY 70 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 A + R L+AVR LF++L RE + + + +PK P++LP+ ++ QV L+ Sbjct: 71 RDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQVNSLID 130 Query: 124 AP---LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 +++P RD+A+ E+LY G+RVSEL GL + DI +G +RV GKG KER VP Sbjct: 131 GVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRGKGKKERQVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 L +A LE YL RP +F + R ++T + +K YA D Sbjct: 191 LPGQAAQSLERYLAE-RPV---AREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDP-G 245 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH RHA+ATHLL GADLR +Q LLGH+ LSTTQ YT V+ L ++ + HP+A Sbjct: 246 IHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHPKA 303 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 116/292 (39%), Positives = 162/292 (55%), Gaps = 6/292 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++ F + L + + +T AY DL +L GL+L +D+ A R Sbjct: 8 LLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAHR--ED 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S +R+LSA+R ++L R DP L P+LP+ LP L E ++ RLL+AP Sbjct: 66 LAMRSRSRVLSAIRSWSRFLKRRGLPAIDP-DTLPVPRLPRNLPGVLDEEEILRLLEAPD 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +RD+A+L YA+GLRVSEL LT+ ++L + +RV GKG KER+ L + Sbjct: 125 PKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDGLSC 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YLE RP + LF ++R TRQ W IK YA GID +SPH L Sbjct: 185 ARLKLYLERVRPS--TNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGID-RSVSPHTL 241 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL+HG D+R +Q+LLGHSD+ TT+IYTHV L + ++HPR Sbjct: 242 RHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRG 293 >UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510416 Length = 319 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 165/312 (52%), Gaps = 24/312 (7%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG----------LTLATAQSDDLQA 57 + + D L ++++ +T AY D+S + H L ++ +DL++ Sbjct: 11 VSGYADHLRS-RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDIDLNDLRS 69 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 L + G ++ AR ++AV+ F Y + ++P+A L +PK RLP L Q Sbjct: 70 WLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKPQQ 129 Query: 118 VERLL-----------QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 L+ + I+ +RD A+LE+LYAT +RVSEL GL D+ ++ + Sbjct: 130 AADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQRSM 189 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 + V+GKGNKER VP G+ A L+ +L R + S D LF R ++ + Sbjct: 190 ITVLGKGNKERRVPYGKPAQTALQKWLSL-RDTFASESSGDALFLGVRGGRIGARQVREL 248 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 + Y A + + PH LRH+ ATH+L+ GADLR +Q LLGHS +S+TQIYTHV+ +R Sbjct: 249 VHRYG-AADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQR 307 Query: 287 LRQLHQQHHPRA 298 L++ ++Q HPRA Sbjct: 308 LQETYRQAHPRA 319 >UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychrobacter RepID=Q1QE98_PSYCK Length = 349 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 114/304 (37%), Positives = 170/304 (55%), Gaps = 10/304 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + + LA + ++L+ L + +N + +TL AY L+ + +L + LT L ++ Sbjct: 39 LSELLAPVHRWLNVLSV-RNHSPHTLTAYFAGLNQLALFLRGKRLTWTRCDKRQLAQHIS 97 Query: 61 ERL-EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 +RL E S + LSA+R + +L E +P+ + P+ LP + Sbjct: 98 QRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLT 157 Query: 120 RLLQAPLIDQP----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 +LL + D P L LRDKAM E+LY++GLRV ELV L + D+ L VRV GKGNK Sbjct: 158 QLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNK 217 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLA 234 RLVPLG +A + YL H W+ LF S++ +++ + R+K A A Sbjct: 218 TRLVPLGIKAADAIRRYLPHRNLWV--EQMDQALFISEKLGTRLSTRAVQQRLKVAATRA 275 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 GI ++ + PH+LRH FA+H+L+ DLR VQ +LGHSD+STTQIYTHV +L Q++ + Sbjct: 276 GI-AQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRA 334 Query: 295 HPRA 298 HPRA Sbjct: 335 HPRA 338 >UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHC9_ACHLI Length = 306 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 100/296 (33%), Positives = 164/296 (55%), Gaps = 7/296 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDL-QALLAERLE 64 I + D L +EKN +E+T +Y D+ ++L GL L A+ L + ++ Sbjct: 4 ISDYKDYLIIEKNFSEHTAISYINDVKGFEDFLIKEGLAKDLLGARRPRLARNYISYLDN 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 +K + AR LS+++ + YL ++ E++ + + +PK+ + LP + E + L + Sbjct: 64 QDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYLFDS 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 +PL R+ +L++LY+ G+R SEL+ L + DI L G + + GKG K+R + L E+ Sbjct: 124 IDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRYIILHEK 183 Query: 185 AVYWLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 + + YL R LL+ LF + + +T + + +G ++ + Sbjct: 184 LIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSG-ETYAI 242 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH+LRHAFAT +LNHGADLRVVQ LLGH L +TQIYTHV+ E+L++ + Q HPR Sbjct: 243 HPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPR 298 >UniRef50_Q5PBX3 Integrase/recombinase n=6 Tax=Anaplasmataceae RepID=Q5PBX3_ANAMM Length = 312 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 112/305 (36%), Positives = 181/305 (59%), Gaps = 10/305 (3%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D ++ FL++L + ++ NT ++YR DL + E+L R L + A + DL+A + Sbjct: 3 DERYLDAFLESLLSGRCVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLN 62 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 GY + AR +SA+R L+ +LY ++ + DP+A+L S KL + LPK L+ +V++LL Sbjct: 63 SRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLC 122 Query: 124 APLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISL-------RQGVVRVIGKGNK 175 A D R A++ +LY++G+R+SEL+ L DI G + + GK + Sbjct: 123 AAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGR 182 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLN-GVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVL 233 ERL+ L E A+ + YL +++ LFP + Q ++RQ +K A++ Sbjct: 183 ERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIV 242 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG+D +++SPH LRH+FATHLLN+G+++ +Q +LGH+ LSTTQIYT+VA +RL++ Q Sbjct: 243 AGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302 Query: 294 HHPRA 298 HP A Sbjct: 303 FHPFA 307 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 115/347 (33%), Positives = 163/347 (46%), Gaps = 58/347 (16%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL---ATAQSDDLQALLAERL 63 + +F D L E+ + +T AY RDL+ R A D++A LA Sbjct: 16 WLARFDDYLRTERGGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHLAGLY 75 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 E A + AR LSA+R F +L + +++P+ + SPK + LP+ L RL++ Sbjct: 76 ERNDAA-TMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAFRLIE 134 Query: 124 APL---------------------------------------------IDQPLELRDKAM 138 AP +PL+LRD+A+ Sbjct: 135 APTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLRDRAI 194 Query: 139 LEVLYATGLRVSELVGLTMSDIS---LRQGVVRVI-GKGNKERLVPLGEEAVYWLETYLE 194 EVLY +GLRV E L + DI L +VRV GKG KER+VPLG +AV L+ YL Sbjct: 195 AEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALDAYLN 254 Query: 195 HG---RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFA 251 R LF S R ++T ++ I A G + + +PH LRH+FA Sbjct: 255 VRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVG--AYEATPHALRHSFA 312 Query: 252 THLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 THLL+ G DLR +Q LLGH+ L++TQIYT V+ + L ++ HPRA Sbjct: 313 THLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRA 359 >UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S88_SHEDO Length = 321 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 160/314 (50%), Gaps = 25/314 (7%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---------------------HRG 44 + +F L E+ L+ T+ Y +L +L Sbjct: 5 SLFARFERYLTSERQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTD 64 Query: 45 LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK 104 + LQALLA+ G S + LSA+++ F+YL E +P+ L++PK Sbjct: 65 EQWLALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPK 124 Query: 105 LPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQ 164 + LPK++ + LL A D PL +RD+A++E+ Y++GLR+ EL L DI L Sbjct: 125 QAKPLPKNIDVDAISHLL-AIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGL 183 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFW 224 V+V+GKG KER VP+G+ A+ L + H + LL LF S + ++++ ++ Sbjct: 184 QEVKVLGKGGKERRVPVGKLAMEALALW--HTQRLLLVQADEPALFVSNQGKRLSHRSIQ 241 Query: 225 HRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284 R+ + + S + PH LRH+FATH+L DLR VQ LLGH++LSTTQIYT + Sbjct: 242 ARMAKWGQNQAL-SVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDF 300 Query: 285 ERLRQLHQQHHPRA 298 + L +++ HPRA Sbjct: 301 QHLAKVYDGAHPRA 314 >UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobacteriaceae RepID=A5FIL1_FLAJ1 Length = 297 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 165/302 (54%), Gaps = 12/302 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQAL 58 MK + + F D L EK + +T+NAY DL E+ R ++ +++ Sbjct: 1 MKSNK---QAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSW 57 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 + ++ G S R +++++ +++L + K E P + K P+ + SE +V Sbjct: 58 IVFLVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEV 117 Query: 119 ERLL---QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 L+ ++P+ E+RDK ++++ Y TG+R +EL+GL + ++ L GVV+V+GK +K Sbjct: 118 SDLMFGVESPI--GFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSK 175 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 ER+VPL + Y++ R L V + F S++ +++ + I Y Sbjct: 176 ERIVPLLPIVADQINLYIKE-REQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVS 234 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + K SPHVLRH FATHLLN+GADL V+ LLGHS L++TQ+YTH + L++++ + H Sbjct: 235 -EKVKKSPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAH 293 Query: 296 PR 297 PR Sbjct: 294 PR 295 >UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobacteria RepID=A2U0K2_9FLAO Length = 315 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 166/294 (56%), Gaps = 6/294 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLE 64 I+ FLD L EKN +++T+ AY++DL+ ++ L +++ + +E Sbjct: 22 LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 + R +S+++ +++L + + + +P + K+ +++ S+ +V +L++ Sbjct: 82 EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + + +R+K M+E+ Y+TG+R +EL+ + + DI+ V++V+GK NKERLVP+ Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + L YL H + + + LF +++ ++ + I Y +K PH Sbjct: 202 VLKTLNLYLGHRKNI---SNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSKVKKS-PH 257 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH+FATHLLN GADL V+ LLGHS L++TQ+YTH + + ++Q++ Q HP++ Sbjct: 258 MLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHPKS 311 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 12/299 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLA 60 A + +L+ + E +E+T+ AYRRDL + L G D A L Sbjct: 8 AHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDFTAALR 66 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G A + AR LS+ R+ +L DP+A + PK P+R+PK L + + R Sbjct: 67 RLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNR 126 Query: 121 LLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P PL +RD A+ E++Y +GLRVSE+ GL D+ L + V V GKG K+R V Sbjct: 127 MLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PL ++V L+ YL P LF + +++++ R+ +A G D Sbjct: 187 PLTGKSVEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNG-DGR 241 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH++RH++A HLL D+R VQ LLGHS LSTTQIYT + + + +L+ + HPRA Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 300 >UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteraceae RepID=D2QBI8_9SPHI Length = 298 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 4/293 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-HHRGLT-LATAQSDDLQALLAERLEGG 66 + FL + EK L+ +TL AY DL +L + A +++ + +E G Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R ++ +R F +L R K + DP + + + K +RLP+ + E +E LL Sbjct: 65 MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124 Query: 127 -IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D LRDK +LE+LY TG+R+SEL GL +D++L + + V+GK NK R+VPL + Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 ++ Y L S + +K + L K SPHV Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLGTK-SPHV 243 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLLN GADL ++ LLGHS L+ TQIYTH + ++L++ + Q HP+A Sbjct: 244 LRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHPKA 296 >UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia RepID=Q2GEQ3_NEOSM Length = 305 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 176/300 (58%), Gaps = 13/300 (4%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D +EQFL+ + +E+N NT+++YR DL ++ +L RG L A ++L +A Sbjct: 5 DCKYVEQFLEKILVERNATLNTISSYRTDLRLLSTFLKKRG--LKDASKENLYEYIANLR 62 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + R ++ R+ F +LY EK +P+ L PK LP+ L++ +V LL Sbjct: 63 AQQLSNATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLLT 122 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISL---RQGVVRVIGKGNKERLVP 180 QP LR A+LE+LY++G+RVSEL+ + +SDI Q + ++GKG KER++P Sbjct: 123 FLEAGQPATLRLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGRKERILP 182 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPS--QRAQQMTRQTFWHRIKHYAVLAGIDS 238 ++A+ L+ YL + + LFP ++ + M+RQ +K A+ ID Sbjct: 183 FSKKAIQVLKLYLTSYQ------SNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKIDP 236 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +++SPHV+RH+FATHLL++G D++VVQ LLGH+ ++TTQIYTH++ +L + + HP + Sbjct: 237 KRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHPLS 296 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 158/312 (50%), Gaps = 24/312 (7%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-----------TLATAQSDD 54 + FLD L E+ + T+ YR+ WL GL D Sbjct: 23 EWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRD 82 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 L+ + E + + + +S +R ++Y R +P LA PKL +RLPK L+ Sbjct: 83 LRDFVIE-GQRRFDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLT 141 Query: 115 EAQVERLLQAP--------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 E Q++ LL P I RD+ +E+LY GLRVSEL L I GV Sbjct: 142 EQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSELTALDYGQIDFTSGV 201 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 RV+GKG KERL PLG+ A+ L + + + + + ++M + Sbjct: 202 ARVLGKGRKERLCPLGKVALAVLVKW---KNEYARDTSPAAPVLVTPEHERMPVRQVQLM 258 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K Y LAG+ ++ LSPH LRH++ATHLLN GADLR+VQ LLGH+ L+TTQIYTHV+ R Sbjct: 259 LKRYLALAGLPTD-LSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIAR 317 Query: 287 LRQLHQQHHPRA 298 LR ++ + HPRA Sbjct: 318 LRDIYDKAHPRA 329 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 + I QFL+ L E+ L++N++ +Y+RDL +L + L+ +D+++ + E Sbjct: 1 MEFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAE 60 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 +A S R +S ++ +++L E +P ++ PK +LP+ LS ++ LL+ Sbjct: 61 NSLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEY 120 Query: 125 PLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDI--SLRQGVVR----VIGKGNKER 177 D P R AM+ +LYA+GLRVSELV L +SDI + V+ V+GKGNKER Sbjct: 121 CSQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKER 180 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSID--VLFPS-QRAQQMTRQTFWHRIKHYAVLA 234 ++ + E A+ L YL ++ + LFPS A MTRQ F +K A+ A Sbjct: 181 IIVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYA 240 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 G++ E +SPHVLRH+FA+HLL GADLRV+Q LLGH+D+STTQIYTH+ T L++ H Sbjct: 241 GLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-H 299 Query: 295 HPRA 298 HP + Sbjct: 300 HPLS 303 >UniRef50_B3PPF3 Tyrosine site-specific integrase/recombinase protein n=29 Tax=Alphaproteobacteria RepID=B3PPF3_RHIE6 Length = 383 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 135/302 (44%), Positives = 180/302 (59%), Gaps = 11/302 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 +E FL+ + E+ A NTL +Y RDL + +L+ R + L A S DL A LA G+ Sbjct: 75 VESFLEMMSAERGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLARQGF 134 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL----- 122 K +S AR L+A+R+ +++LY E R DDP+ L +PK + LPK + +V RLL Sbjct: 135 KPSSQARRLAAMRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSRLLSQAQA 194 Query: 123 --QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 P Q LR A+LE+LYATG+RVSELV L + + + GKGNKERLVP Sbjct: 195 EADDPAPGQLQRLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVP 254 Query: 181 LGEEAVYWLETY---LEHGRPWLLNGVSIDVLFPSQ-RAQQMTRQTFWHRIKHYAVLAGI 236 L + A+ L++Y L LF + + + RQ F +K+ A+ AG+ Sbjct: 255 LSQSAIKALKSYGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGL 314 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 +SPHV+RHAFA+HLL +GADLRVVQ LLGHSD+STTQIYTHV ERL+QL Q HHP Sbjct: 315 TPSLISPHVMRHAFASHLLANGADLRVVQELLGHSDISTTQIYTHVLEERLQQLVQTHHP 374 Query: 297 RA 298 A Sbjct: 375 LA 376 >UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Proteobacteria RepID=Q1LSD3_RALME Length = 369 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 161/306 (52%), Gaps = 18/306 (5%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEGGY 67 ++LD L + LA +TL +Y DLS++ G+ L ++ +++ A G Sbjct: 33 RYLDWLATSRKLAAHTLTSYGHDLSVLQSQAIRLAPGVALLALETRHIRSFAARLHGNGL 92 Query: 68 KATSSARLLSAVRRLFQYLYREKF-REDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A + AR LSA R + + R + +P + +PK + LPK LS L+ Sbjct: 93 SARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVALVAHRQ 152 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTM---SD--------ISLRQGVVRVIGKGNK 175 D LRD+A+ E+ Y++GLR+SEL+ L + D + L V V+GKG++ Sbjct: 153 DDTNESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAEVTVLGKGSR 212 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNG---VSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 R VP+G +A+ L+ ++ L G LF R +++ T RIK A+ Sbjct: 213 RRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHALFLGTRGRRLPISTVQQRIKRQAL 272 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG+ S+ + PH+LRH+FATH+L DLR VQ +LGH+ +STTQIYT + + L +++ Sbjct: 273 AAGVPSD-VHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAKVYD 331 Query: 293 QHHPRA 298 Q HPRA Sbjct: 332 QAHPRA 337 >UniRef50_A3HVT2 Putative site-specific recombinase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVT2_9SPHI Length = 294 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 162/294 (55%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG 65 I+ F++ L EK + +T+ AYR+DL +E++ + +++A + + +E Sbjct: 2 IDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILFVGHSEIRAWVIDLVEN 61 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ-A 124 T+ R ++ +R +++L R + DP+ L S K P++LP+ L E + +L+ + Sbjct: 62 QLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQELTISSVLEES 121 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + RDK +LE LY TG+R+SEL GL DI+L + VV+V+GK KER++PL Sbjct: 122 VYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKERIIPLTNG 181 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + +Y + D S + + ++ Y + S++ SPH Sbjct: 182 LARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQTSKR-SPH 240 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VLRH FATHLLN GADL V+ LLGHS+L+ TQ+YTH + E+L+ + +Q HP+A Sbjct: 241 VLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAVFEQAHPKA 294 >UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IL8_THICR Length = 317 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 175/318 (55%), Gaps = 29/318 (9%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEW---------LHHRGL---------- 45 ++ ++F+ L LE N +E+T++ Y+RDL ++ + L + L Sbjct: 1 MSDYQRFIKQLKLE-NKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLD 59 Query: 46 ---TLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS 102 + LQA +A R++ G A S AR LSA+R + +L + +P+ L + Sbjct: 60 QFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKA 119 Query: 103 PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSD-IS 161 PK P+ LPK L +LL+ P + ++RD+A+ E+LY+ GLRVSELV L +S + Sbjct: 120 PKQPKALPKSLDVDLTRQLLEQP-LKTWQDVRDQAIFEILYSGGLRVSELVELDLSPGLD 178 Query: 162 -LRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTR 220 L G VRV+GKG KER P+G+ A L +LE + G +F ++ +++ Sbjct: 179 GLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPG--EQAVFVNRFGKRLGV 236 Query: 221 QTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYT 280 ++ ++ + AG+ ++ +SPH LRHA ATH+L DLR VQ +LGH++LSTTQIYT Sbjct: 237 RSIQTQLDKRTLQAGLPTK-MSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYT 295 Query: 281 HVATERLRQLHQQHHPRA 298 + + L ++ + HPRA Sbjct: 296 KLDLQHLATVYDKAHPRA 313 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 98/293 (33%), Positives = 161/293 (54%), Gaps = 6/293 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 ++ FLD + L + + +T AYRRD+ + +L + + T + L + Sbjct: 7 LKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTTLRQKN 66 Query: 67 -YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 +S R LS++R F+YL + +P + + K + LP+ L+ QV+ LL + Sbjct: 67 HLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQDLLDSF 126 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 ++ LR++ ++E+LYA GLR+SE + + DI R VRV+GK +KER+VP +E Sbjct: 127 DLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVPFYKEL 186 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 L YL+ + D F + + ++ ++ ++ + + L PHV Sbjct: 187 GDLLTKYLKKYGSF---SQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQ-LHPHV 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL++GADLR+VQ LLGH +LSTTQIYTHV+ + LR++ + HP + Sbjct: 243 LRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLS 295 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 114/303 (37%), Positives = 165/303 (54%), Gaps = 15/303 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLAT---AQSDDLQALLAER 62 A E FL L L K + T +AYRRD+S +L GLTL +Q A Sbjct: 5 AVTETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASL 64 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 TS AR L+A+R LF+YL + +D+P+ + +PK + P+ L+ QV LL Sbjct: 65 YYKKLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLL 124 Query: 123 QAPL---------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 + ++ + R+ A+LE+LY +GLR+SE + L +SDI G VRVIGKG Sbjct: 125 KGANNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKG 184 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 NKERL PL + ++ LE +L ++ + LF R +++ R+ ++ + Sbjct: 185 NKERLAPLSDTSIVALEEWLAIR--HMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQ 242 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG+ PH LRH+FATHLL GA+LR VQ LLGH+ LSTTQ YTH+ ++L Q + + Sbjct: 243 AGLPLTTA-PHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDK 301 Query: 294 HHP 296 HP Sbjct: 302 AHP 304 >UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=Thermoanaerobacteraceae RepID=XERDL_THETN Length = 290 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 167/301 (55%), Gaps = 22/301 (7%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 + + +FL+ L K L++NTL +Y RD+ + +++ G+ +A+ + L + Sbjct: 4 SVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQQ 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G + +R LS+++ + YL+ +K E+DPS + +PK+ ++ P L+ QV+ LL Sbjct: 64 GKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFD 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 LRDKA++E++YA+GL+VSE++ L + D++L G + V KER++P+G A Sbjct: 124 FGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVR--SGKERVIPIGSYA 181 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 V L+ Y+E GR LF + R +++TRQ W IK YA L+P++ Sbjct: 182 VAALQEYIEKGRK---PRKGEKALFLNLRGKRLTRQGCWKIIKEYADKIS-PGLPLTPNI 237 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHS--------DLSTTQIYTHVATERLRQLHQQHHPR 297 LR +FA H+L +GADL+ VQ +LG+ L V+ ++++++ + HPR Sbjct: 238 LRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSL--------VSRSKMKEVYNKFHPR 289 Query: 298 A 298 A Sbjct: 290 A 290 >UniRef50_Q98FX8 Tyrosine recombinase xerD n=2 Tax=Mesorhizobium RepID=XERD_RHILO Length = 305 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 141/304 (46%), Positives = 183/304 (60%), Gaps = 15/304 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 ARIE FL+ + E+ AENTL++YRRDL LA A + D++A L + E Sbjct: 5 ARIEAFLEMMSAERGAAENTLSSYRRDLEDASS---GIDGGLAGAAAADIRAYLDDIAER 61 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G+ TS AR LSA+R+ F++LY E R DDP+ L SPK + LPK +SEA+ RL+ Sbjct: 62 GFAPTSQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLIDRA 121 Query: 126 LI----------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 + D+ LR A++EVLYATGLRVSELVGL ++ V GKG+K Sbjct: 122 AVEAGDAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDK 181 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQ-RAQQMTRQTFWHRIKHYAVLA 234 ER+VPL +A + +L R + LFP+ + ++RQ F +K A A Sbjct: 182 ERMVPLSAKARVAMRAWLA-ARAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARA 240 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 GI S K+SPHVLRHAFA+HLL +GADLR VQ LLGH+D+STTQIYTHV ERL +L H Sbjct: 241 GIASAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEERLVRLVNDH 300 Query: 295 HPRA 298 HP A Sbjct: 301 HPLA 304 >UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae RepID=D1B6D4_THEAS Length = 292 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 103/293 (35%), Positives = 151/293 (51%), Gaps = 13/293 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I+ FL+ L +E+T+ Y DL E+L + + D ++ L + G Sbjct: 2 IDSFLEYLKSL-GRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYG 60 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + S+ R +S++R YL E DPS + P+ LP+ +S V RLL+ Sbjct: 61 FAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGP 120 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + RD+ ++E+LY +GLRVSEL L D+ + + +RV+GKG+K R+VP G Sbjct: 121 SGRE-AFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQ 179 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 L + E LFP +R +++T++T + A G+ +SPH Sbjct: 180 DMLRRWGEMV-------GRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFG--VSPHT 230 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GA LRVVQ L+GH L TTQ Y V ER+R +Q HHPRA Sbjct: 231 LRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHPRA 283 >UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepID=XERC_CHLT2 Length = 315 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 163/307 (53%), Gaps = 21/307 (6%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-------------------GLTLATA 50 FLD L K + +TL Y DLS + +L + L+ + Sbjct: 7 AFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPPLSFSLF 66 Query: 51 QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 110 D+++ L E+++ + + R LSA++ ++ + + ++P+ + P+LPQ LP Sbjct: 67 TKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELP 126 Query: 111 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 L+ QV L+ AP +D+ RD+ +LE+ Y++GLR+SE+ L +DI + ++ + Sbjct: 127 SPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR 186 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 230 GKG KER+VP+ + AV WL+ YL H F ++ ++++ ++ + + Y Sbjct: 187 GKGKKERIVPMTKVAVQWLQDYLNHP-DRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 + G+ ++PH +RH ATH L G DL+ +Q+LLGH+ L TT IYTHV+ + +Q+ Sbjct: 246 LLKTGLSG-SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304 Query: 291 HQQHHPR 297 H + HP Sbjct: 305 HDETHPH 311 >UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV23_9GAMM Length = 345 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 170/302 (56%), Gaps = 10/302 (3%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 D A + ++L L K + T+ +YR+ L + + + + L L L R Sbjct: 46 DDQALVNRWLAELS-NKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIRR 104 Query: 63 LE-GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 L+ +SS L+ +R+L+++L ++ +P+ + + P+ LP L + +L Sbjct: 105 LDVDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQL 164 Query: 122 LQAPLIDQPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 L + E +RDKAMLE+LY +GLRV ELVGL MSDI Q ++RV+GKG K R Sbjct: 165 LDQAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTR 224 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAGI 236 +VP+GE+A L YL H W+ +F S+R +++ +T RIK A AG+ Sbjct: 225 IVPIGEKAWQALINYLPHRSLWV--EEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGV 282 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 ++ L PH+LRH FA+H+L+ DLR VQ LLGHSD+STTQIYTH+ L Q++ + HP Sbjct: 283 -AQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAHP 341 Query: 297 RA 298 R+ Sbjct: 342 RS 343 >UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipplei RepID=Q83MV4_TROWT Length = 316 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 159/298 (53%), Gaps = 12/298 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLAE 61 I +F+ L + + +T AY RDL E++ +L DL++ L Sbjct: 25 LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 84 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + A S R +S+++ F++ Y K + +A L +PK +LP LSE ++ ++ Sbjct: 85 --QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQI 142 Query: 122 LQAPLIDQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L P ++LR+ A+ E+LYA+ +RVSELV L + I VRV GK K+R+V Sbjct: 143 LGNFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVL 202 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G+ A + L+ YL R LL+ S LF R +++ + + + + Sbjct: 203 FGKPASHALDLYLNM-RHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEM---PKGP 258 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+ ATH+L++GADLR +Q +LGHS LSTTQIYTHV+ ERL + Q HPRA Sbjct: 259 RGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 316 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 409 e-113 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 407 e-112 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 407 e-112 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 407 e-112 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 406 e-112 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 401 e-110 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 400 e-110 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 399 e-110 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 397 e-109 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 396 e-109 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 395 e-108 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 394 e-108 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 390 e-107 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 390 e-107 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 390 e-107 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 389 e-107 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 388 e-107 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 388 e-106 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 388 e-106 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 388 e-106 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 387 e-106 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 387 e-106 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 387 e-106 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 385 e-106 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 385 e-105 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 385 e-105 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 384 e-105 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 383 e-105 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 382 e-105 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 381 e-104 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 381 e-104 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 381 e-104 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 381 e-104 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 379 e-104 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 379 e-104 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 379 e-104 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 378 e-103 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 378 e-103 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 378 e-103 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 377 e-103 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 377 e-103 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 376 e-103 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 376 e-103 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 375 e-102 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 375 e-102 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 374 e-102 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 374 e-102 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 374 e-102 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 374 e-102 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 374 e-102 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 373 e-102 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 373 e-102 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 373 e-102 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 373 e-102 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 373 e-102 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 372 e-102 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 372 e-101 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 370 e-101 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 370 e-101 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 370 e-101 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 370 e-101 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 369 e-101 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 369 e-101 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 369 e-101 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 369 e-101 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 369 e-101 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 369 e-101 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 369 e-101 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 368 e-100 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 368 e-100 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 368 e-100 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 366 e-100 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 366 e-100 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 366 e-100 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 366 e-100 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 366 e-100 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 366 e-100 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 366 e-100 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 366 e-100 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 365 e-100 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 365 1e-99 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 365 1e-99 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 365 1e-99 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 365 1e-99 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 364 1e-99 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 364 2e-99 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 364 2e-99 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 364 2e-99 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 364 2e-99 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 363 3e-99 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 363 4e-99 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 363 4e-99 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 363 5e-99 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 363 5e-99 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 362 8e-99 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 362 9e-99 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 362 1e-98 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 362 1e-98 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 361 1e-98 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 361 1e-98 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 361 1e-98 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 361 2e-98 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 361 2e-98 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 361 2e-98 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 361 2e-98 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 360 3e-98 UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriace... 360 4e-98 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 360 4e-98 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 360 4e-98 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 360 4e-98 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 359 5e-98 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 359 5e-98 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 359 8e-98 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 358 1e-97 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 358 1e-97 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 358 1e-97 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 358 1e-97 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 358 2e-97 UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacil... 358 2e-97 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 357 2e-97 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 357 3e-97 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 357 3e-97 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 357 3e-97 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 356 4e-97 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 356 4e-97 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 356 6e-97 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 356 7e-97 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 354 1e-96 UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum t... 354 2e-96 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 354 2e-96 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 354 2e-96 UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax... 354 2e-96 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 354 2e-96 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 353 3e-96 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 353 4e-96 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 353 5e-96 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 353 5e-96 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 353 6e-96 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 352 1e-95 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 352 1e-95 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 351 2e-95 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 351 2e-95 UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 351 2e-95 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 351 2e-95 UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n... 351 2e-95 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 351 3e-95 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 350 4e-95 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 350 4e-95 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 349 4e-95 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 349 5e-95 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 349 6e-95 UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes ... 349 7e-95 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 348 1e-94 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 348 1e-94 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 348 1e-94 UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyc... 348 1e-94 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 348 1e-94 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 348 2e-94 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 348 2e-94 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 347 2e-94 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 347 2e-94 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 347 2e-94 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 347 3e-94 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 346 4e-94 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 346 4e-94 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 346 5e-94 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 346 6e-94 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 346 6e-94 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 346 8e-94 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 346 8e-94 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 345 1e-93 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 345 1e-93 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 345 1e-93 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 345 1e-93 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 344 2e-93 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 344 2e-93 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 344 3e-93 UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira Rep... 344 3e-93 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 343 4e-93 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 343 4e-93 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 343 5e-93 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 343 6e-93 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 343 6e-93 UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales ... 342 8e-93 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 342 1e-92 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 341 1e-92 UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales R... 341 2e-92 UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular orga... 341 2e-92 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 341 2e-92 UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochlori... 341 3e-92 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 340 3e-92 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 340 4e-92 UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desu... 340 4e-92 UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteria... 339 6e-92 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 339 1e-91 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 338 1e-91 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 337 3e-91 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 337 3e-91 UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella Rep... 337 3e-91 UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter seg... 336 5e-91 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 336 6e-91 UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID... 336 8e-91 UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroi... 335 1e-90 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 335 1e-90 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 335 1e-90 UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybac... 335 1e-90 UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepI... 335 1e-90 UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 335 1e-90 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 335 1e-90 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 334 1e-90 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 334 2e-90 UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilag... 334 2e-90 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 334 2e-90 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 333 4e-90 UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria Rep... 333 5e-90 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 333 6e-90 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 333 6e-90 UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteoba... 333 7e-90 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 332 7e-90 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 332 1e-89 UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcu... 332 1e-89 UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella den... 331 1e-89 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 331 1e-89 UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Br... 331 2e-89 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 331 2e-89 UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax... 331 3e-89 UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Prote... 331 3e-89 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 330 3e-89 UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobact... 330 3e-89 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 330 4e-89 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 330 4e-89 UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia ... 329 7e-89 UniRef50_A6LE90 Tyrosine type site-specific recombinase n=8 Tax=... 329 9e-89 UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomi... 329 9e-89 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 329 1e-88 UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobact... 328 1e-88 UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepI... 328 1e-88 UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacterac... 328 1e-88 UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepI... 328 2e-88 UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga ... 328 2e-88 UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteracea... 328 2e-88 UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipple... 327 3e-88 UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella a... 327 3e-88 UniRef50_C9LEJ3 Integrase/recombinase XerC n=1 Tax=Prevotella ta... 326 4e-88 UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=... 326 5e-88 UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulos... 326 5e-88 UniRef50_C0QXF7 Tyrosine recombinase XerD n=1 Tax=Brachyspira hy... 326 6e-88 UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter ... 326 8e-88 UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae ... 325 1e-87 UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadacea... 324 2e-87 Sequences not found previously or not previously below threshold: >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 409 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 131/296 (44%), Positives = 187/296 (63%), Gaps = 2/296 (0%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAER 62 + I+++L+ L +EK + NTL AY RDLS + RG+ + DD+ +AE Sbjct: 2 NFQLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAEL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A S R L+A+R +++L REK E +P A + K+ RLP LS ++++LL Sbjct: 62 KRKGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P + +RD AMLE++YATGLRVSEL+ LT I+ + G + V GKGNKER+VP+G Sbjct: 122 SQPGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + A + Y + RP + G +VLF ++ Q MTRQ FW ++ YAV AG+ +K+ Sbjct: 182 QVAYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQ-KKVH 240 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH RH+FA+HLL GADLR VQM+LGH+D+STTQIYTHV E L+ +H+++HPR Sbjct: 241 PHTFRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPRG 296 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 407 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 205/295 (69%), Positives = 241/295 (81%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 D +EQFLDA+W+E+ L+ENTL +YR DLS ++ W+ L LQ Sbjct: 26 DHGLVEQFLDAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLA 85 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + +K TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLP+RLPKDLSE QV+ LL+ Sbjct: 86 DADFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLE 145 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP + P+ELRDKAMLE+LYATGLRV+ELV LTM +ISLRQGVVRVIGKG KERLVP+GE Sbjct: 146 APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGE 205 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 AV W+ET++E GRP LL S DV+FPS+RA+QMTRQTFW+RIKHY+V+AGID+E LSP Sbjct: 206 NAVDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSP 265 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+Q+H QHHPRA Sbjct: 266 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQHHPRA 320 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 204/296 (68%), Positives = 241/296 (81%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 QD +EQFLDA+W+E+ LAENTL +YR DL +++W+ L LQ + Sbjct: 10 QDFGYVEQFLDAMWMERGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYL 69 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 ++ YK TS AR+LSA+RRLFQYL+REK R DDPSA L SPKLPQRLPKD+SE QV+ LL Sbjct: 70 VDQDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALL 129 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 AP + P+ELRDKAMLE+LYATGLRV+ELV LTM +ISLRQGVVRV GKG KERLVP+G Sbjct: 130 DAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMG 189 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E A+ W+ET+++ GRP LL S DV+FPS+RA+QMTRQTFWHRIK YAV+AGID++ LS Sbjct: 190 ENAIDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLS 249 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRHAFATHLLN+GADLRVVQMLLGHSDLSTTQIYTHVATERL+Q+H QHHPRA Sbjct: 250 PHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQHHPRA 305 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 117/305 (38%), Positives = 183/305 (60%), Gaps = 11/305 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT------LATAQSDD 54 M+ D I+ FL+ L +EK +ENT AY DL M+ + Sbjct: 1 MRDD---IQSFLNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQT 57 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 + A + + E Y T+ R ++A + F ++ E +++P+ ++++PK+ + LP +S Sbjct: 58 MLAYMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAIS 117 Query: 115 EAQVERLLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 +QV LL P RDKAMLE+LYA+G+RV+ELV L + D+ L++G VR GKG Sbjct: 118 ISQVRALLNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKG 177 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KER++P+ +A ++ YL RP L+ + LF ++R ++TRQ W +K YA Sbjct: 178 RKERMIPIYPQAAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYARE 237 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AG+D ++PH LRH+FATH+L+ GADLR VQ LLGH+++STTQIYTH+ +E +++ +++ Sbjct: 238 AGLDDV-VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEK 296 Query: 294 HHPRA 298 HPRA Sbjct: 297 AHPRA 301 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 406 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 120/293 (40%), Positives = 193/293 (65%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 IE F+ L EK LA N+ AY+RDL ++L R L+ D+ A LA +L+ Sbjct: 5 IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G +S AR LS+++ +++L E + +PS+ L +PK+ ++LP+ LS +V++L++ P Sbjct: 65 GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 PL +RD+AMLE++Y TG+RVSEL+ L + D++ G +R +GKG KER++P+ + + Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + W++ YL R L+ LF + R + ++RQ F+ + +Y A ++ ++++PH Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELE-KEVTPHT 243 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +GADLR VQ +LGH+D+STTQIYTH+ RLR+++QQ+HPR+ Sbjct: 244 LRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 401 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 136/296 (45%), Positives = 185/296 (62%), Gaps = 4/296 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGL-TLATAQSDDLQALLAERL 63 IE FL L +E+ L+ NT+ AY RDL V ++ +GL T + D+ +A Sbjct: 3 DLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMAFAR 62 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + G A S AR ++++R F YL + DP + +PK Q LPK L+ VE+LL Sbjct: 63 QEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS 122 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + PL LRD+AM+E+LYATGLRV+ELV L M D+ L G ++ IGKG+KER++PLG+ Sbjct: 123 SSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGK 182 Query: 184 EAVYWLETYLEHGRPWLLNGV-SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 A LE YLE RP L D +F + Q +TRQ FW +K A +GI+ + ++ Sbjct: 183 TATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIE-KPIT 241 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLL +GADLR VQ LLGH+D+STTQIYTHV RL+ +++Q HPRA Sbjct: 242 PHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 400 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 128/295 (43%), Positives = 188/295 (63%), Gaps = 2/295 (0%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 IE++L + +EK L+ NT+ AYRRDL +++ ++ + +Q L + Sbjct: 2 ETIIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLI 61 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + G A S AR +S +R Q+ REK+ DP+ L SPK ++LP L+ +V LL+ Sbjct: 62 DQGQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLE 121 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P +++ RD+ MLE+LYATG+RVSEL+ L + +++L G VRV GKG+KER+VPLG+ Sbjct: 122 TPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGD 181 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + +L TY+E RP LL +VLF + + ++RQ W IK V A I + L+P Sbjct: 182 AVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANI-KKTLTP 240 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL +GADLR VQ +LGHSD+STTQ+YTHV+ ++R+++ Q HPRA Sbjct: 241 HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQFHPRA 295 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 130/300 (43%), Positives = 184/300 (61%), Gaps = 6/300 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQAL 58 MK +I+ F+ + +E+ L++NT+ +Y RDL +L + Sbjct: 1 MKD---QIKDFIHYVMVERGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQY 57 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L + G +SAR L+++R Q+L REK + DPS H+ + K + LPK L+ +V Sbjct: 58 LKHLKDSGKSGKTSARHLASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEV 117 Query: 119 ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 ERLL P + P RDKAMLE+LYATG+RVSE++ L +D+ L G +R GKG KER+ Sbjct: 118 ERLLDTPKLTSPFGYRDKAMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERI 177 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VP+GE A +E Y+ R LL D LF + +Q++RQ FW +K A+ AGI Sbjct: 178 VPIGEAAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGI-K 236 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++L+PH LRH+FATHLL +GADLR VQ +LGH+D+STTQIYTHV RL+ +++Q HPRA Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 123/300 (41%), Positives = 193/300 (64%), Gaps = 7/300 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALL 59 M+++L F+D+L ++ L++NT+ +Y+RDL ++L + + + L Sbjct: 1 MQRNLDY---FVDSLAIQ-GLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFL 56 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + + GY +S++R++S +++ F++L +E+ E +P L PK + LPK L+ +V Sbjct: 57 QDLKQDGYATSSTSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVT 116 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 ++L + L LRDKAMLE+LYATG+RVSEL+ L +SD+ L G ++ IGKGNK+R++ Sbjct: 117 QVLNSCDTSTVLGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRII 176 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSI-DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P+G+ A W++ YL + R L + + LF + R TRQ FW +K AG+ Sbjct: 177 PIGQAATNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGV-H 235 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + +SPH LRH+FATH+L GADLR+VQ LLGHSD+STTQIYTH+ ER+++++QQ HPRA Sbjct: 236 KDVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRA 295 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 175/298 (58%), Gaps = 8/298 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLA 60 I+++L + ++N + TL AYR DL + +L G LA L+ LA Sbjct: 8 DNIQRFIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLA 67 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + T+ AR L+++R L+++L + E +P + +PK ++LP +S E Sbjct: 68 FLKKKNPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEI 127 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL P LRDKA++E LY+TG+RVSELVG+ ++DI G+V+V GKG+KER++P Sbjct: 128 LLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILP 187 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G A+ ++ YLE + LF ++ ++T ++ I+ Y A + + Sbjct: 188 VGNHALNAIQLYLEKR------KADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHL-R 240 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH RH+FATHLL++GADLR VQ LGHS LSTTQIYTHV TERL+Q++ + HPRA Sbjct: 241 VSPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 125/299 (41%), Positives = 187/299 (62%), Gaps = 5/299 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M+++ ++L+ L +EKN++ TL YR DL V +L + ++ L+ + Sbjct: 1 MQENF---NKYLEYLSVEKNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYM 57 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + + G S AR LSAVR ++YL RE + +P+ + +SP+L +RLP+ L+ A+V Sbjct: 58 SSLIAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVS 117 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +LL+ P P LRDKA +E+LYA+GLRVSELV L + ++ L +RV GKG+KER+V Sbjct: 118 KLLRMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIV 177 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 +G A+ ++TYL GRP L + LF + +++ ++F R+ A AGI+ + Sbjct: 178 LMGLPAIQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIE-K 236 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+LRH FATHLL+ GADLRVVQ LLGHS+LSTTQIYTHV + R+++ HP A Sbjct: 237 HVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLA 295 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 204/296 (68%), Positives = 250/296 (84%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 ++LA I+ FL+ W+EK L+ENT+ +YR DL+ + +WL L+L T + DLQ L ER Sbjct: 2 KNLALIDLFLNEYWIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGER 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 LE GYKATS+AR+LSA+R+LFQYLYREK+R DDPSA L+SPKLP RLPK L+E QV LL Sbjct: 62 LEKGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P ++ PLELRDKAMLE+LYATGLRV+ELV LT+ ++S++QGVVRVIGKGNKER+VP+G Sbjct: 122 NTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 EEA YW+ ++ +GRP LLNG S DV+FPSQRAQQMTRQTFWHR+KHYA+LA ID++ LS Sbjct: 182 EEAAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALS 241 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRHAFATHL+NHGADLRVVQMLLGH+DLSTTQIYTHVA ERL++LH++ HPR Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPRG 297 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 129/296 (43%), Positives = 194/296 (65%), Gaps = 4/296 (1%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 + +++FL+ L EK L+ NT+ +Y DL ++WL + + + + DD+ L Sbjct: 2 EQKEILKKFLNYLLTEKALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E Y +TS AR+LS++++ F+++ + DP+ L SPKL RLPK L +V+RLL Sbjct: 62 KEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + +++ LRD AMLE++YA+GLRVSELV L +SDI+ G +RV GKG+KER+VP+ Sbjct: 122 -SVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIA 180 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + ++ ++ YL RP LL + + +F + R Q MTRQ FW IK +AG+ ++ Sbjct: 181 QRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGV---NVT 237 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH++RH+FATHLL GADLR +Q +LGHSD+STTQIYT V+ +RLR+ + +HHPRA Sbjct: 238 PHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRA 293 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 117/295 (39%), Positives = 181/295 (61%), Gaps = 3/295 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERL 63 + FLD L +K L+ NTL +Y+RD+ + +L + +A + A L Sbjct: 4 EELVLHFLDFLKNDKRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQ 63 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + G ++ +R L+++R +QYL ++ DP+ +L SPK+ ++LP+ LS +VE LL+ Sbjct: 64 KKGRATSTISRNLASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLE 123 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P D RDKAMLE+LYATG+RVSEL+ L + D++L +R KG +ER+VP+G Sbjct: 124 QPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNLEMQYIRCN-KGARERIVPIGS 182 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +V L+ YL R L+ LF + +++TRQ FW IK Y A I+ + ++P Sbjct: 183 VSVNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKIN-KDITP 241 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FA HLL +GADLR +Q +LGHSD+S+TQIY +A R+++++++ HPRA Sbjct: 242 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 128/305 (41%), Positives = 191/305 (62%), Gaps = 8/305 (2%) Query: 1 MKQDLA----RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQ 56 M + +E FL+ L LE+N + NT +Y DL + WLH G+ A D++ Sbjct: 1 MPEREEPWRKTLETFLNYLTLERNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIR 60 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + E E G +A+S AR +SA+R ++L E+ +P+ ++ PKL + LP L+ Sbjct: 61 KFIQELHEIGLEASSIARNISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIE 120 Query: 117 QVERLLQAPLIDQPLE---LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 ++ LL APL P LRDKAMLE LYATG+RVSEL+GL+ ++ + G VRV GKG Sbjct: 121 EMATLLDAPLKRHPTSTFMLRDKAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKG 180 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 +KERLVP+G+ A+ W++ YL+ RP +++ S D +F + R ++R W+ ++ +AV+ Sbjct: 181 SKERLVPVGQTAISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVI 240 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 AGI+ + +SPH RH+FATHLL GADLRVVQ +LGHS + TQIYTH+ ++++H+ Sbjct: 241 AGIE-KPISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKT 299 Query: 294 HHPRA 298 HPR Sbjct: 300 FHPRG 304 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 389 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 121/297 (40%), Positives = 186/297 (62%), Gaps = 7/297 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 MK ++E FL L EKN++ T+++YRRDL + +L G+ + + ++ Q L Sbjct: 1 MKD---KLEDFLFYLKFEKNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLV 57 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + YK S AR +S++R ++L RE + + S + PK+P LP+ L ++E Sbjct: 58 ALYKK-YKIKSIARKISSIRSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIES 116 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+ P PL +R+ A+LE YATG+RVSELV L + ++ L + VR GKG KER+VP Sbjct: 117 FLKIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVP 176 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ AV L+ YL L N + LF +++ +++TRQ W IK Y+ + G+ +K Sbjct: 177 LGDYAVESLKRYLSVR--HLFNPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLP-KK 233 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +SPH RH+FATHLL++GAD+R+VQ LLGHSD++TTQIYTH+ + +L +++Q+ HP Sbjct: 234 VSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPL 290 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 388 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 121/297 (40%), Positives = 173/297 (58%), Gaps = 8/297 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT---LATAQSDDLQALLAERLE 64 IEQF L LEKN + +T+ +YR D+ E+ + A ++A LA Sbjct: 8 IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y T+ AR ++A+R +++L RE + +P + +PK+ ++LP L E +V LL+ Sbjct: 68 DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P D L RD A+LE+LYATG+RV+EL GL SD+ L V V GKG KER+VP+G Sbjct: 128 P-ADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRT 186 Query: 185 AVYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A LE YL RP L LF + + +T ++ I Y + ++K+ Sbjct: 187 AAAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAV-AKKV 245 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH +RH FATH+LN+GADLR VQ +LGH +LSTTQ+YTHV ERL+ ++++ HPRA Sbjct: 246 SPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 388 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 110/301 (36%), Positives = 177/301 (58%), Gaps = 7/301 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M I FL+ + L+K + +TL AY+ DL + + + ++ ++ Sbjct: 1 MTNTQFYITNFLNHIKLQKGDSSHTLRAYKNDLEEFFNFAK---VEPEKVEPIVIRGFIS 57 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E++ G T+ AR LS +R F YLY E F + +P+ ++S K+ + LPK L+ + Sbjct: 58 EQILKGKSKTTVARKLSTLRSFFSYLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFK 117 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L++AP D+ RDKA+LE+ Y++G+RVSEL GL + D+ L++G+++V GKG KER+VP Sbjct: 118 LVEAPSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVP 177 Query: 181 LGEEAVYWLETYLEHGRPWLLNGV---SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 +G++A L+ YL + + LF + R Q+++ + ++ YA G+ Sbjct: 178 VGQKAKEALKKYLAIRQILRIKKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGVL 237 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + + PH LRH FA+HLL GADLRV+Q LLGH+ LSTTQIYTHV + L +++ + HP Sbjct: 238 EK-IGPHTLRHTFASHLLMEGADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPL 296 Query: 298 A 298 + Sbjct: 297 S 297 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 388 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 118/294 (40%), Positives = 176/294 (59%), Gaps = 5/294 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGY 67 E+FL L +E+N + NT+ Y+ DL +L RG T D+++ LA+ Sbjct: 10 ERFLRYLRVERNDSPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQLHREEK 69 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR +S++R ++YL RE + +P + +PKL ++LP L E ++ LL+ P + Sbjct: 70 ARRTIARRISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDL 129 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+A+LE LY+TG RVSELVGLT++ + L ++GKG+KER+VPLG + Sbjct: 130 STELGQRDRALLEFLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLGHPCIR 189 Query: 188 WLETYLEHGRPWLLNG---VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + YL R L+ S D +F + R +T ++ + Y +A I + +SPH Sbjct: 190 AMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQ-KHVSPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +RH FATHLL+HGADLR VQ LLGH+ LSTTQIYTHV +R+ ++++HHPRA Sbjct: 249 TIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHHPRA 302 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 123/301 (40%), Positives = 199/301 (66%), Gaps = 5/301 (1%) Query: 1 MKQD--LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQAL 58 M+++ +I+ +L +E+ L+ NT+ AYR+DL + ++ G+ ++ D+ A Sbjct: 1 MEKNKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAF 60 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 LA + + +S +RL+S++R+ +Q+L R+ ++ +P + PK +RLP L++ ++ Sbjct: 61 LARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEI 120 Query: 119 ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 LL P I + L LRD+A+LE LYATG+RVSEL+ L + D+ G+VRV+GKG+KERL Sbjct: 121 NDLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERL 180 Query: 179 VPLGEEAVYWLETYLEHGRP--WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 +P+ A++W++ Y + R L G + + +F + RA+Q+TRQ W IK Y AGI Sbjct: 181 IPISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGI 240 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 ++ ++PH LRH FATHLL +GADLRVVQ +LGHSD+STTQIYT+++ + + Q++Q+ HP Sbjct: 241 -TKDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHP 299 Query: 297 R 297 R Sbjct: 300 R 300 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 113/294 (38%), Positives = 176/294 (59%), Gaps = 3/294 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAERLE 64 I+ F L E L++NT++AY RDL +L + QS ++ L + Sbjct: 4 LIKDFSYYLNNELGLSKNTIDAYMRDLKDYESFLDKYHKLKDVDNIQSKHIEGYLKSIKK 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G A + +R L++++ ++L EK ++D + +A PK+ + LP LS +V +L+ Sbjct: 64 KGLSAKTISRKLTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEV 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 L LR+ A+LE++Y +GLRVSEL+ + + DI ++Q V V GKG+KER+VP+ + Sbjct: 124 IDKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDM 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ + YL R L+ D LF + + + ++R F+ +K A A +D EK+SPH Sbjct: 184 AIIAIRNYLVKARDDLIKEK-TDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPH 242 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL +G DLR +Q LLGH D+STTQIYTH++ RL+Q++ + HPRA Sbjct: 243 TLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRA 296 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 132/289 (45%), Positives = 182/289 (62%), Gaps = 4/289 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 FL+ +EK L+ N+++AY DL+ V++ +++ + + G Sbjct: 18 AFLNFCRIEKGLSPNSISAYSADLARFVQFTGDVQEPPG---VPEIRQYIDHLYQTGLSN 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S R L+ +R + +L RE DP+ HL +P+ Q +PK L+ ++ER++QAP + + Sbjct: 75 RSVGRHLTTLRNFYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAK 134 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 PL LRD+AM+EVLYA+GLRVSEL L + D+ L V+R GKGNK+RLVP+G+ AV + Sbjct: 135 PLGLRDRAMMEVLYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAV 194 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 YLE GRP LL G + LF + R MTRQ FW + Y AGI L+PHVLRH+ Sbjct: 195 RAYLESGRPGLLKGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFH-GLTPHVLRHS 253 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR VQ++LGH+D+STTQIYTHV RLR ++HHPRA Sbjct: 254 FATHLLEGGADLRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 387 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 133/319 (41%), Positives = 189/319 (59%), Gaps = 24/319 (7%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 Q A ++++L L +E+ L+ NT N+Y RDL +L RG + + +DL L + Sbjct: 4 QTEAWLKKYLSYLNVERGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQE 63 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G A + AR L+ +R F +L E+ REDDP+ +L++PKL Q LP LSE + +L+ Sbjct: 64 KNQGRSARTLARYLATLRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLM 123 Query: 123 -----------------------QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSD 159 + D+ L +R+ AM+EVLY GLRVSELVGL +SD Sbjct: 124 GEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSD 183 Query: 160 ISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMT 219 I +R GKGNKER+VP+GE A+ L+ YLEH R L +VLF + R +T Sbjct: 184 IIFETRTLRCRGKGNKERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALT 243 Query: 220 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 RQ W +K +A G+ E + PH RH+FATHLL+HGADLR VQ +LGH+D++TTQIY Sbjct: 244 RQGIWDILKKWAQTHGVQ-ENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIY 302 Query: 280 THVATERLRQLHQQHHPRA 298 TH++ +RL ++ ++ HPRA Sbjct: 303 THLSRQRLLEVFRKAHPRA 321 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 185/296 (62%), Positives = 221/296 (74%), Gaps = 1/296 (0%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 Q I+ FLD LW K L++NTL+AYR DL +L +GL L D++A LA R Sbjct: 6 QCDPLIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYR 65 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 +E + TSSARLLS++RR + YL + K DP A + SPKL + LP LSE+QV+RLL Sbjct: 66 VEQQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLL 125 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P +D P+E RDKAMLE+LYATGLRVSELVGLTM +SLRQG+VR+IGKG KERLVP+G Sbjct: 126 AEPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMG 185 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E A+ +E YL R LL + DV+FPS+R+Q MTRQTFWHRIK YA AGI++E LS Sbjct: 186 EMAITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE-LS 244 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRHAFATHLLNHGADLRVVQ+LLGHSDLSTTQIYTHVA RL++LHQQHHPR Sbjct: 245 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHPRG 300 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 190/298 (63%), Gaps = 4/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M + F+ + +EK L+ENT+ AY+ D+ + + + ++L + +D+ L Sbjct: 1 MTDCKEALNDFISYIIVEKGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLW 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E G K S R++ ++R+ +++L E +++P+ +LA+P LP+ LP L+ +V+ Sbjct: 61 EMKTEGLKPRSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDL 120 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL + D + +R+KAMLE+LYA GLRVSEL+ L SDI+L +R+IGKG+KERLVP Sbjct: 121 LLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVP 180 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G +A +++ YL+ RP L D +F S+ ++++R FW ++K+ A GI+ + Sbjct: 181 FGNKAKFFISIYLKKRRPCL---NVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGIN-KN 236 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+FA+HLL GAD+R VQ +LGH+ ++TTQIYTH+ +R+ Q H++ HPR Sbjct: 237 ITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPRG 294 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 176/299 (58%), Gaps = 4/299 (1%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---LTLATAQSDDLQALL 59 I+ FL L +E+N ++ TL +Y DL +VE+L L +L+ + Sbjct: 11 DLHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYV 70 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A E Y+ T+ AR L+ +R F+Y RE + + +P+ L +P+ ++LP L+ Q+ Sbjct: 71 AYLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIG 130 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL+AP +Q + LRD+A+LE LY+ GLRVSELV L +SD ++RV+GKG KER+ Sbjct: 131 TLLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIA 190 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G A L +LE D LF ++ ++T ++ ++ Y + G+D + Sbjct: 191 PIGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKK 250 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH FATHLL+ GADLR VQ LLGH L+TTQIYTHV+T+RL + +++ HP A Sbjct: 251 T-SPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHA 308 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 125/292 (42%), Positives = 178/292 (60%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 ++ F DAL +E+ + T+ AYRRD+ + G+T L+ + + G Sbjct: 22 LQAFEDALQIEEGASPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDLG 81 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R +SA+R F+ + E DP+ L SP+ + LP+ LS +V RLL AP Sbjct: 82 LAGSSIRRNISALRTWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPG 141 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +D+ L RD+AMLE+ Y GLRVSE +G+++ D+ L +VRV+GKGNKERLVP+G A+ Sbjct: 142 LDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSAI 201 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + YL RP L G +LF + R ++R W ++ Y +AGI+ + +SPH L Sbjct: 202 GAVAVYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIE-KPVSPHTL 260 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GADLR VQ +LGH+D++TTQIYTHV E LR +H+Q HPRA Sbjct: 261 RHSFATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 181/297 (60%), Gaps = 1/297 (0%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 ++ F + L +EK L++N++ +Y DL+ +L + Q+DD+ L E Sbjct: 3 SSHNNLLQNFQEYLSVEKGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNE 62 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + + + AR + A+R+ +++L EK + +P+ + +P++ + +P L++ ++E L Sbjct: 63 EKDRKISSKTIAREVVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEEL 122 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + D ELRDK + E+LY++GLR+SE L ++D+ L + V GKG ++RLVP Sbjct: 123 FASIKEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPF 182 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 GE+++ L YL+ RP++L + + LF S++ + R++ W + HY I +K+ Sbjct: 183 GEKSLDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSIL-KKV 241 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PH LRH+FATHLL + ADL+ VQ LLGH D++TTQIYTH+A + LR++H++ HPR Sbjct: 242 TPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPRG 298 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 382 bits (983), Expect = e-105, Method: Composition-based stats. Identities = 113/293 (38%), Positives = 183/293 (62%), Gaps = 5/293 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 ++ FL+ L LE+N + NT+ AY RD+ E+L +G + + DL+ L + L Sbjct: 3 EELKAFLNYLLLERNYSPNTIAAYERDILDFQEFL--QGKSFLSVNEVDLKQFLVDILRK 60 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 ++AR + A+R +++L R F +++P+ L PK+P+ LP+ L+ +V ++++ Sbjct: 61 NRSRRTAARKMVALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQ 120 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 P LR++A+LE+ Y GLR+ E+ GLT++D+ L QG VRV GKG ++R+VPLG+ A Sbjct: 121 ENSTPTGLRNRALLELFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYA 180 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+ YLE GRP + LF +Q+ +T + + I AG++ + ++PH Sbjct: 181 LDSLKLYLEAGRPAF--KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRK-ITPHT 237 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH++ATHLL GAD+R VQ LLGH LSTT+IYTH++ ERLR+++ + HPR+ Sbjct: 238 FRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRS 290 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 117/292 (40%), Positives = 178/292 (60%), Gaps = 2/292 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 I F+ L +E+ LA T +Y++DL+ + WL + T +QA L + + Sbjct: 4 LIADFIHYLDVERGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTK 63 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S +R++SA+R+ +++L RE + DP + +PK Q LP LS +++ L+ P Sbjct: 64 -APASVSRMISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPD 122 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +PL LRD+A+ E++YATGLRVSE+VGL + + L +++V GKG+KERLVP+ +A Sbjct: 123 TTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQVTGKGDKERLVPISPQAA 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+ YL+ RP L+ +F + +TRQ W +K Y GI+ + ++PH L Sbjct: 183 DWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIE-KDVTPHTL 241 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FAT LL +GADLRVVQ LLGHSD+STTQIYTH++ + L ++ + HPR Sbjct: 242 RHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPRG 293 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 112/295 (37%), Positives = 183/295 (62%), Gaps = 2/295 (0%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERL 63 I+ F++ L +E A NT++ Y+ DL + +++L + + +T + + + + + Sbjct: 2 DELIDSFINYLLVECGSAMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEK 61 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S R + ++R +++L E + +P L SPKL ++LP + ++E LL Sbjct: 62 HRGQSVNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLS 121 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 A + L +R+KA+LE+LYATG RVSE+ ++++ I+L G ++ GKG+KER+VPLG+ Sbjct: 122 AADVKTKLGIRNKAILELLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGK 181 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +A ++ YL RP + + + LF S+ + + R+ W +K+ A+ AGI +E +SP Sbjct: 182 KASIAIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGI-TEAISP 240 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL +GADLR VQ +LGH +STTQIYTHV + L+ +HQ+ HPRA Sbjct: 241 HKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHPRA 295 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 116/292 (39%), Positives = 170/292 (58%), Gaps = 4/292 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGY 67 +L L +E+ + T+ +Y DL+ + +L RG+ A DD+ A + GY Sbjct: 16 NDYLAYLSVERGSSSLTVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGY 75 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S R LSA++ ++L E + +P+ ++ PK+P RLP LS ++V LL P Sbjct: 76 ADSSIERHLSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFK 135 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D PL LRD+A LE+LY GLR SEL+ L + D+ +G++RV+GKG++ER+VP+G A Sbjct: 136 DGPLGLRDQAALELLYGCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQR 195 Query: 188 WLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L YLE+GRP L D + + R +++RQ ++ A I L PH L Sbjct: 196 VLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAG--ATIGRPDLHPHTL 253 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L GADLR +Q +LGHSD+STTQIY HV +R+ + HPRA Sbjct: 254 RHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRA 305 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 187/295 (63%), Gaps = 3/295 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 A +E+F++ L +K L+ NTL +Y+RD+ + +L +T + + A L Sbjct: 2 EANVEKFINFLERDKRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQ 61 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + G ++ +R L+++R +Q+LY++K ++DP++ L SPK+ ++LP+ LS +VE LL Sbjct: 62 KKGRATSTISRNLASIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLD 121 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P +RDKAMLE+LYATG+RVSEL+ L + DI+ G+++ KG +ER +P+G Sbjct: 122 QPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGLIKCN-KGTRERTIPIGS 180 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + + YLE R +L+ LF + +++TRQ FW IKHY A I+ + ++P Sbjct: 181 ISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKIN-KDITP 239 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FA HLL +GADLR +Q +LGHSD+S+TQIY +A +++ ++++ HPRA Sbjct: 240 HTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 121/306 (39%), Positives = 181/306 (59%), Gaps = 14/306 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH---RGLTLATAQSDDLQALLAER 62 A I QFL L +E+ AE T +YR DL+ + ++L R + DL+ ++ Sbjct: 3 AAIGQFLRYLVVERGAAELTSKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSAL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E GY TS AR L+++R +++ RE + +P+ L +P+ ++LP L+ ++ +LL Sbjct: 63 HEAGYAKTSIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLL 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +AP D P LRD+AMLE LY+ GLRVSELVG+ D+ L +GVVR+ GKG+KERL PLG Sbjct: 123 EAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLG 182 Query: 183 EEAVYWLETYLEHG----------RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 A+ ++ +L H R +F ++ +++T ++ ++ Y Sbjct: 183 SFALRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLK 242 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 L G+D +PH LRH FATHLL+ GAD+R VQ LLGH L TTQIYTHV+T L+ +++ Sbjct: 243 LTGLDLRT-TPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVYE 301 Query: 293 QHHPRA 298 + HPRA Sbjct: 302 RAHPRA 307 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 114/295 (38%), Positives = 169/295 (57%), Gaps = 6/295 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT--LATAQSDDLQALLAERLEGG 66 E F L +EK+ + T+ Y D+ E++ R D+++ LA+ + Sbjct: 18 EDFALYLEVEKDDSPLTIENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRD 77 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + AR +S++R ++YL RE + +P + +PKL ++LP L E ++ LL+ P Sbjct: 78 LSRRTIARRISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPD 137 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 L RD+A+LE LY+TG RVSELVGLT++ + L ++GKG KERLVPLG V Sbjct: 138 CTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCV 197 Query: 187 YWLETYLEHGRPWLLNG---VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +E YL H R L+ +F + R + ++ ++ + Y + + + +SP Sbjct: 198 AAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQ-KHVSP 256 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H +RH FATHLL+HGADLR VQ LLGH LSTTQIYTHV ERL ++++HHPRA Sbjct: 257 HTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHHPRA 311 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 114/294 (38%), Positives = 169/294 (57%), Gaps = 4/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+ F+ + +EKN + +T+ +Y D+ ++ + +++ L + Sbjct: 29 IQMFVRYMQVEKNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKA 88 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y S AR +S++R LF +L RE+ + A PK +LP L E +++ L +A Sbjct: 89 YARNSVARKISSMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFE 148 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + PL+ RD+A+LE+LYATG+RV E L ++DI LR G V GKGNKER VP+G A Sbjct: 149 GNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFAC 208 Query: 187 YWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 L Y+E R LL + + LF + R +T ++ + A + + + PH Sbjct: 209 DALHEYIEDARVNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQ-KHIRPH 267 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLLN+GADLRVVQ LLGH LSTTQ+YTHV +RLR++++ HHPRA Sbjct: 268 DLRHSFATHLLNNGADLRVVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 159/298 (53%), Positives = 201/298 (67%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + ++L+ ++ F D L + ++ +T NAY DL E HR +L S+D+ +L Sbjct: 14 IPENLSFLQGFRDYLVAQT-VSPHTRNAYLSDLIQCSE--LHRTASLPQWSSEDIGDVLI 70 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E + G S AR LSA+R+ +++L +K RED+P A SPK+ + LPKDLSE VE Sbjct: 71 ELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEA 130 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+ AP I L LRD+AM EVLYA GLRVSEL+ L + I+L+QG VR+ GKGNKERLVP Sbjct: 131 LINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGKGNKERLVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ A W+E YL RP L + D LF +Q M+RQ FW+ IK YA+ A I +E Sbjct: 191 LGQYACDWIEKYLAESRPQLYK-SNTDYLFLTQHGGIMSRQNFWYAIKRYALQANIQAE- 248 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA R++ LH Q+HPR Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPRG 306 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 111/291 (38%), Positives = 173/291 (59%), Gaps = 6/291 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE +++ L E+N + NTL +Y RDL ++ + L ++++ + + Y Sbjct: 9 IENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFT--NKRNVRSYIQFIAQKNY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 K ++ R + ++R F+YL + +D + + +PK ++LP+ LS +V +LL +P + Sbjct: 67 KNSTFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKLLNSPSL 126 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D + +RD+A++E LYATG+RVSELVG+ DI+ G +RV GK KER+V +GEE + Sbjct: 127 DDLIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIVGEETLK 186 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ Y +H RP LL F + + +++ + IK Y +K+SPH LR Sbjct: 187 ILQLYKDHVRPKLLKKP-EKAFFLNAKGGRISDRAIRMIIKKYTKDFN---KKVSPHTLR 242 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H FATHLL GADLR VQ LLGH +STTQIYTH+ +E++R+ + HPRA Sbjct: 243 HTFATHLLEGGADLRYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRA 293 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 122/299 (40%), Positives = 178/299 (59%), Gaps = 6/299 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 + F+ L LE+ L+ NTL AYR DL +L G + DL A + Sbjct: 16 EDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGDLAAFVGALAA 75 Query: 65 GG-----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 GG AT+ R ++ +R +++L RE+ + DP+A L P ++LPK LS +V+ Sbjct: 76 GGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEVQ 135 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL P P LRD+A+LE++YA GLR SE V + + ++ + G++R GKGNKERLV Sbjct: 136 HLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGKGNKERLV 195 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G +A+ L YL GRP ++ +F +QR +TRQ + ++ +A AG+ + Sbjct: 196 PIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTAGL-GD 254 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 K+SPH LRH FATHLL G DLR +Q +LGH+D++TTQIYTH++ ERLR ++ HPRA Sbjct: 255 KMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRA 313 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 170/302 (56%), Gaps = 5/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M + F++ L +EKN + T++ Y + V +++ +G+ D + L Sbjct: 1 MTNKQRLVHLFIEYLQIEKNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYL 60 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 E E G + ++ +SA+R +++L RE+ +++P ++ PK +R+P L E +++ Sbjct: 61 TEAYEKGLTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELK 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 L + PL R++A+LE+LYATG+RVSEL L SD+ L V V GKG+K+R V Sbjct: 121 ELFTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYV 180 Query: 180 PLGEEAVYWLETYLEHGRPWLL---NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 P G A L TYLE GR L + +F +QR +T + + A Sbjct: 181 PFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKAS- 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH+LRH FATHLLN GADLR VQ LLGHS+LS+TQ+YTHV+ + LR+ + HHP Sbjct: 240 GTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHHP 299 Query: 297 RA 298 RA Sbjct: 300 RA 301 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 124/293 (42%), Positives = 175/293 (59%), Gaps = 2/293 (0%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 I++++ L LE+ LA+N+L +Y DL+ ++L ++ L + + A L Sbjct: 4 LIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLEAK 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S AR L AVR +++L E +P + PK RLP+ LS+ QV LL+ P Sbjct: 64 GLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLEMP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 LR+ AMLE+LY GLRVSELVGL + L VR+ GKG++ER+VP G A Sbjct: 124 DRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGSHA 183 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +LE GRPW+L + LF ++ MTRQ FW +K YA+ AGI + +SPH Sbjct: 184 RQRTMEWLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIK-VSPHT 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GADLR VQ +LGH+D+++TQIYTHV+ + L +H+++HPR Sbjct: 243 LRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHKKYHPRG 295 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 376 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 165/293 (56%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 Q+LD L +++ A+ T+ +Y+R + ++L + L+ L + E Sbjct: 10 YFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAMLRGYLTKLYEK 69 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 T+ LSA+R F YL +E+ D+P + S K+ +R P L ++ LL + Sbjct: 70 NLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEEILGLLDSI 129 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L +R+KAM+E++YA+GLR SE+V L +S+I Q V+ + GKGNK+R VP + A Sbjct: 130 ETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDRYVPFHDYA 189 Query: 186 VYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 WL Y++ R L+ + +F ++ +T + + + L ++K+ PH Sbjct: 190 GEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYD-STKKIHPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +RH+FATHLLN GAD+R VQ LLGH +LSTTQIYTH++ + L++++ + HPR Sbjct: 249 TIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPR 301 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 127/299 (42%), Positives = 179/299 (59%), Gaps = 8/299 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---LTLATAQSDDLQALLAERL 63 I+++L L E N A +T +AY DL+ ++E L L +D L+ + Sbjct: 43 WIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSGVPRLPEVSADRLRLCITRLY 102 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G + +S AR L+A R F+YL RE P L SPKL + LPK LSE++V LL Sbjct: 103 AVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLS 162 Query: 124 APLI--DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 A D+PL LR+ AM+E+ YA+GLRV+EL GL + + G VRV+GKG KER+VP+ Sbjct: 163 AAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVDAGLGYVRVLGKGGKERIVPV 222 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSI--DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 GE+A+ + YL+ GRP L LF + R ++++ + + A A ++ Sbjct: 223 GEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALE-R 281 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH FATHLL+ GADLR VQ +LGH+ LSTTQIYTHV+ ERL++++ + HPRA Sbjct: 282 GISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 162/298 (54%), Positives = 203/298 (68%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + + L+ ++ F D L + ++ +T NAY DL E LH + L SDD+ +L Sbjct: 14 IPEHLSFLQGFRDYLVAQT-VSPHTRNAYLSDLIQCSE-LHKKNR-LPDWTSDDISDVLI 70 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E + G S AR LSA+R+ +++L +K R D+P A SPK+ + LPKDLSE VE Sbjct: 71 ELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEA 130 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L+QAP I L LRD+AM EVLYA GLRVSEL+ L + I+L+QG +R+ GKGNKERLVP Sbjct: 131 LIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGKGNKERLVP 190 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+ A W+E YL RP L S D LF +Q M+RQ FW+ IKHYA+ A I +E Sbjct: 191 LGQYACDWVERYLNEARPQLYK-SSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQAE- 248 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA R++QLH++HHPR Sbjct: 249 LSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPRG 306 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 162/301 (53%), Gaps = 11/301 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL---------TLATAQSDDLQA 57 I+ FL++L E+ + T AY +DL ++ GL + + ++ Sbjct: 14 WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 L + K ++ AR LS++R +++L + +P+ + +PK + + L+ + Sbjct: 74 YLGFLHKKNEK-STMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDE 132 Query: 118 VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 LL + L D RD+AM E LY+TG+RVSEL GL M ++ +RV+GKG+KER Sbjct: 133 AFALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRVLGKGDKER 192 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 +VP+G +A+ ++ Y + + +F ++ ++T ++ ++ G++ Sbjct: 193 IVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGLN 252 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LSPH LRH FATH+L++GADLR VQ LLGH+ +STT YTHV+ +RL + + HPR Sbjct: 253 -RPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPR 311 Query: 298 A 298 Sbjct: 312 G 312 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 374 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 121/296 (40%), Positives = 177/296 (59%), Gaps = 5/296 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++EQF++ L +NL+ENTL +Y+ DL +W + L +L+ LA + Sbjct: 10 QVEQFIEYLHKVRNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQ 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y A + R LSA+R ++++ REK DP+ L++P+ P+ LP ++++ V RLL++ Sbjct: 70 YSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCD 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + LRD+A LE LYATG R+SE+ L + + L+ G VR+ GKG+KER+VPL E A+ Sbjct: 130 VSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAI 189 Query: 187 YWLETYLEHGRPWLLNGVSID----VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 WL+ YL RP LL LF S R M+ + Y AG+DS LS Sbjct: 190 EWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDS-SLS 248 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH +RH +AT LL GADLR+VQ LLGH LSTTQ+YTH++ +RL++ + HPR+ Sbjct: 249 PHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRS 304 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 111/301 (36%), Positives = 174/301 (57%), Gaps = 7/301 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 MK ++ + FL + +E+ + T++AY RD+ ++L +T D++ L Sbjct: 2 MKNEM---QDFLAYIKVERRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYL 58 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 Y +S +R LS++R + +L K E +P A ++ K LP+ E ++E Sbjct: 59 GVLHRENYNRSSISRFLSSLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIE 118 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + + + +Q L+ R+KA++EVLYATG+RVSEL LT+ + L ++ VIGKG+KER V Sbjct: 119 KFINSIDGNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYV 178 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDV--LFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 P+G+ A LETYLE GR L+ + +F + +T + ++ +G+ Sbjct: 179 PIGDFARTALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLT 238 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + + PH+LRH FATHLLN+GAD+R VQ LLGH LS+TQIYTHV E L+Q +Q + PR Sbjct: 239 LK-IHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPR 297 Query: 298 A 298 + Sbjct: 298 S 298 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 109/289 (37%), Positives = 173/289 (59%), Gaps = 1/289 (0%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 + L E+ L EN++ +Y++DLS ++ + L + L G Sbjct: 14 DYTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWLNYLQNSGKSN 73 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S ++S++R+ F YL ++ + DP + +PK LP+ L+ ++E +L P I Sbjct: 74 NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 L LR++A+LE +YATG RVSE+ L ++D+ G++ IGKG K+R+VP+GE ++ ++ Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRIVPIGEMSLLYI 193 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 Y + RP LL LF + +++RQ + +K A+ AGID + +SPH LRH+ Sbjct: 194 SKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGID-KDISPHTLRHS 252 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FAT+LL +GADLR+VQ LLGHSD+STTQIYTHV+ + +R+ + + HPRA Sbjct: 253 FATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHPRA 301 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 141/292 (48%), Positives = 193/292 (66%), Gaps = 3/292 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++ FL+ L +EK A NT++AY RDL+ + +L R + D+ LA+ G Sbjct: 4 YLDLFLNYLLVEKGAAANTVSAYSRDLNRYLLFLGER--EPDGIRPSDVTGFLAKLKGEG 61 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 S AR LSA+R L ++L RE + E +P+A + +PK ++LP LS +VE LL +PL Sbjct: 62 IAPRSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPL 121 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 ELRDKAMLE+LYATGLRVSELVGL +S+++L G + IGKG+KERLVP+GE A Sbjct: 122 DTGAQELRDKAMLELLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESAC 181 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + YL+ R LL + +LF S+ M+RQ FW+ IK A+ AG+ + +SPH L Sbjct: 182 HATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRT-SISPHTL 240 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL +GADLR VQ++LGH+DLS+TQIYTHV ER+++LH HPR Sbjct: 241 RHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPRG 292 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 168/302 (55%), Gaps = 6/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALL 59 M +E+F L EK + +T+ Y DL +L R L+L + ++ L Sbjct: 1 MTSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYL 60 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 S AR L++++ ++YL R+K P+ + SPKLP+ LPK L +V Sbjct: 61 GTLSTDH-APASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVF 119 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P + L LRD+A+LE+LY GLR+SEL GL + DI +VRV+GKG+KERLV Sbjct: 120 AILDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLL---NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 P+ +++ LE YL L + + +F + R ++T ++ + Y + + Sbjct: 180 PVNAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCAL 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + +SPH +RH+FATHLL GAD+R +Q LLGHS LSTTQ YT V E+L+Q++ HP Sbjct: 240 TRK-VSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAHP 298 Query: 297 RA 298 RA Sbjct: 299 RA 300 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 373 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 152/296 (51%), Positives = 190/296 (64%), Gaps = 1/296 (0%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 D +E+FLD L +E LA NTL AYRRDL + + R LTL Q D+ + E Sbjct: 2 SDYRLMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGEL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + ++ AR LSA+RRLF++L + R +DP+ + PK ++LP LSEA+ E LL Sbjct: 62 AQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 AP L +RD AMLE++YATGLRVSELV LT+ + G VRVIGKGNKER+VP+G Sbjct: 122 YAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPMG 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E A + Y R LL G + LF S R MTR FWH +K YA A I + LS Sbjct: 182 EAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANI-MKPLS 240 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH +RHAFATHLLNHGADLR VQM+LGH+D+STT+IYTHVA RL++LH Q HPR Sbjct: 241 PHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPRG 296 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 127/292 (43%), Positives = 182/292 (62%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I FL+ L +E LA NT +Y RDL + W+ L + +D+ A + Y Sbjct: 14 INLFLEYLTVELGLAYNTRESYGRDLRLFAGWIKK---PLEDVKREDILAYMRMLKVHQY 70 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS++R L+A++ F+++ E F E+DPS + + LPK +S +V++L AP + Sbjct: 71 APTSASRKLAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDL 130 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 QP RD+ MLEV+YATG+RVSEL+ L + ++L V GKG KERL+PLG+ A+ Sbjct: 131 TQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQ 190 Query: 188 WLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L+ YL RP + G D LF + R MTRQ FW I+ Y V AG+ + L+PH+L Sbjct: 191 YLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQ-KPLTPHIL 249 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L++GADLR VQ LLGH+D+STTQIYTH+ RL+++ + HPRA Sbjct: 250 RHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--------TLATAQSDDLQ 56 I++F + LE+NL+ +T Y DL+ +L ++ Sbjct: 2 DELIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVR 61 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 A L K + AR L+++R F+YL++++ + +P +++P+ + +P LS Sbjct: 62 AFLGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVD 121 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 ++ LL P + LRD+A+LE+ Y++G+RVSEL G+ D+ QG++R+ GKG KE Sbjct: 122 EIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIRGKGKKE 181 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSID----VLFPSQRAQQMTRQTFWHRIKHYAV 232 R+VP+G+ A ++ Y+ +G ++ LF ++R +++ ++ + Y Sbjct: 182 RIVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVS 241 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 ++G+ +++SPH LRH+FATHL++ GADLR +Q LLGH LSTTQ YT V+ RL ++ Sbjct: 242 MSGLQ-KQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYD 300 Query: 293 QHHPRA 298 + HP+A Sbjct: 301 RAHPKA 306 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 100/301 (33%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 +E+FL + + +E+T AY+RD+ + ++ + + + +A Sbjct: 2 EDLLERFLQYIMQVNSGSEHTKAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFLR 61 Query: 64 EGG------YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 + G K T+ AR LS++R + YL ++P + +PK+ +R+P+ L + Sbjct: 62 DKGGKGYSGMKNTTIARKLSSLRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDE 121 Query: 118 VERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 +E L++ ++ LRD+ M E++YA GLRVSE V L D+ ++ + GKG+KER Sbjct: 122 IEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDFADNILHIHGKGDKER 181 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 LVP + A L +Y++ R LF +QR +++T + + + + Sbjct: 182 LVPFYDLAKELLVSYIKDVRDVWATSDET-ALFVNQRGKKLTTRGVQYLMNKAVEKCDL- 239 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + PH+ RH+FATHLL++GADLR VQ LLGHS LSTTQIY HV+ ERL+ ++ HPR Sbjct: 240 HVHVHPHMFRHSFATHLLDNGADLRYVQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPR 299 Query: 298 A 298 A Sbjct: 300 A 300 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 124/331 (37%), Positives = 172/331 (51%), Gaps = 42/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT--------------------- 46 + FL +L +EK+ +++TL +YR DL+ WL G T Sbjct: 17 VAGFLASLSVEKSASQHTLRSYRLDLAQFYAWLASGGTTAPVVGGRGSGRTRRHDFAAQQ 76 Query: 47 -----------LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 95 L +++ LA + + AR LS +R ++YL R + Sbjct: 77 EEPVRPVGLDELRAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTN 136 Query: 96 PSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGL 155 P A + +PKL +RLP L E ++ LL P PL LRD+A+LE+LYATGLRV ELV L Sbjct: 137 PVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVAL 196 Query: 156 TMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLN---------GVSI 206 DI +G V V GKG KER VP+G EA+ L YL G P L + Sbjct: 197 NRGDIDYSEGWVIVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAK 256 Query: 207 DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQM 266 LF ++ +++ ++ + Y + S ++SPH +RH FATH+LNHGADLR VQ Sbjct: 257 QPLFLNKLGGRLSDRSVRRLLDRYVSQLAL-SRQISPHKIRHTFATHMLNHGADLRAVQE 315 Query: 267 LLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +LGH+ LSTTQIYTHV T+RLR + + HPR Sbjct: 316 MLGHASLSTTQIYTHVTTQRLRTEYLRAHPR 346 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 126/291 (43%), Positives = 176/291 (60%), Gaps = 2/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 IE FL + LE+ LA NT+ +YRRDL L +G + + Sbjct: 22 IEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSLSSAS 81 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y S AR LSA+R L +L RE+FR DD +A L+ PK +R+P L+E ++ RLL AP Sbjct: 82 YTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLLAAPT 141 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRD+A+LE+ Y++GLRVSEL GL + + L G +RV GKG KER+VP+G +A+ Sbjct: 142 GGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFLRVFGKGAKERVVPIGGKAI 201 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L TYL GRP + + LF ++ ++R W +K YA AG+ ++ + PH L Sbjct: 202 EALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGL-TKNVKPHGL 260 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FATHLL+ GADLR +Q +LGH+ +STTQIYT V ++RL + H + HPR Sbjct: 261 RHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPR 311 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 4/299 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALL 59 M I FL L E+ L+ +TL AY+RDL+ W GL + D++ Sbjct: 1 MATLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFA 60 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A R G S R LS++R LF+YL RE +P+ +A+P+ P+RLP LS + Sbjct: 61 AARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAA 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL+ D PL LRD+A+ E++Y++GLR++E VGL + + L +G+V V+GKG K R V Sbjct: 121 RLLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEVVGKGAKTRRV 180 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G +A L+ +L L G +F SQR +++ ++ R+ A L+G+ Sbjct: 181 PVGGKAREALQAWLAVRPA--LAGADEPAVFVSQRGGRLSARSVQARLARLATLSGV-GR 237 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+LRH+FA+HLL DLR VQ LLGH+D++TTQ+YTH+ + L +++ Q HPRA Sbjct: 238 PVHPHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRA 296 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 113/289 (39%), Positives = 171/289 (59%), Gaps = 3/289 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 ++LD L E+ L+ NT+ AY++D+ + + G + + + + + G + Sbjct: 12 KWLDKLISERGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRKRGDSS 71 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 + AR LS++R F + E +P+ + PKLP LP LS+ ++ RLL P I Sbjct: 72 RTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDITN 131 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 L RDK +LE+LYA+G+RVSEL+G+ + D +G+++V GKG KER +PL A+ L Sbjct: 132 KLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKLL 191 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 Y++ RP LF ++ + +TRQ W IK YA+LA I+ + +SPH RH Sbjct: 192 IHYVQKIRPMFT--PIEKFLFLNRSGKGLTRQAIWKIIKRYALLASIN-KSISPHTFRHT 248 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR VQ+LLGH D+S T++YTHV ++RL+ +H HPR+ Sbjct: 249 FATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRS 297 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 176/292 (60%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I F+D L +E LA NT +Y RDL + W+ + DD+ ++ Y Sbjct: 11 IALFMDYLTVEMGLARNTRESYGRDLRLFAVWVKK---PIKEISRDDILTYMSVLKAQNY 67 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TSSAR L+A++ F+++ E E DP + S LPK LS +V RL +AP + Sbjct: 68 AVTSSARKLAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDL 127 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P RD+ MLEV+YATG+RVSEL+ L + ++L V GKG KERL+PLG A+ Sbjct: 128 DTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIE 187 Query: 188 WLETYLEHGRPWLLNG-VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 +L+ YL RP + D LF + R MTRQ FW IK+Y + I ++ L+PH+L Sbjct: 188 YLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHI-AKSLTPHIL 246 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L++GADLR VQ LLGHSD+STTQIYTH+ RL+ ++ + HPRA Sbjct: 247 RHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 114/301 (37%), Positives = 178/301 (59%), Gaps = 12/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG- 66 + ++D L +EKN + NTL+ Y+RDL+ V WL L + + D++ +A+ G Sbjct: 28 VAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWLDQHDLNIDSVDEPDIEQFIADLRRGDS 87 Query: 67 ------YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 A+S+AR AVR L ++ + E D +A + + Q LP L+ QV R Sbjct: 88 TLGWSPLAASSAARATVAVRSLHRFSHEEGQLARDVAAGVTVLRSGQSLPHALTVEQVNR 147 Query: 121 LLQAPLID---QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 L++A ++ P+ LRD+A++E+LY TG+R+SE + L + I VRV+GKG KER Sbjct: 148 LIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVVGKGRKER 207 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 LVP+G A++ ++ +L GRP ++ S LF + R ++ RQ+ W + A G+ Sbjct: 208 LVPIGAPALHAIDAWLVRGRPSMVK-RSDKALFLNARGNRLGRQSVWKFLHAAAERCGL- 265 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + + PH LRH++ATHLL GAD+R VQ LLGH+ ++TTQIYT V+ + LR+++ HPR Sbjct: 266 GDSVGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPR 325 Query: 298 A 298 A Sbjct: 326 A 326 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 123/292 (42%), Positives = 170/292 (58%), Gaps = 5/292 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 ++FL L E +LA+NT+ AY RD+ V W+ R A +L +A G Sbjct: 37 DEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRR--PADLTITELSDFVASLHGEGLA 94 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 S +R + A+R F+YL E D+P+ LA+ K QR+P LS +VE L A Sbjct: 95 PASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKKS 154 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 RD+A+LEVLYATG R SE+ L + D++L + +R GKG+K+R+VP+G A+ Sbjct: 155 DSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCHGKGDKQRMVPIGGRAIRA 214 Query: 189 LETYLEHGRPWLLNGVSI--DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YLE R L + D LF S+ + + R W +K YA AGI E +SPH L Sbjct: 215 IQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRAGISDE-ISPHSL 273 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GADLR VQ +LGH+ + TTQIYTHV RL+++H+ HPRA Sbjct: 274 RHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 369 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 118/299 (39%), Positives = 171/299 (57%), Gaps = 6/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALL 59 M++D A F+ L ++ L+E T +Y RDL + +L + + + Sbjct: 1 MERDAA---SFISFLAGQRGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYF 57 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A + G + R+ +R F+YL +E+ E DP L PK+ ++ P+ L+ + E Sbjct: 58 AYLKDLGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETE 117 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL+AP D PL LRDKAMLE+LYATG+RVSEL+ L D++L +R G+ KER++ Sbjct: 118 RLLEAPKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERIL 177 Query: 180 PLGEEAVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P G WL+ YL GR L L+ LFP++R +++RQ FW +K Y AGI S Sbjct: 178 PFGGVTAEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKYGQEAGITS 237 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + ++PH LRH+FA HLL GAD+R VQ LLGHSD ST Q+Y + L+ ++ HPR Sbjct: 238 D-ITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTVYDAFHPR 295 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 369 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 105/293 (35%), Positives = 176/293 (60%), Gaps = 4/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH--RGLTLATAQSDDLQALLAERLEG 65 ++ ++ L +E+NLA N+L +Y RDL ++L + T+ +++ + + Sbjct: 5 LQDYMTMLKVERNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSNR 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A S R +S++R +L E +D+P+ L +PK+P++LP L+ +++++L Sbjct: 65 GLAANSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGII 124 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + P+ RD A+ E++Y+ GLRV+EL SDI ++RV GKG+K+R VP+G A Sbjct: 125 PENAPMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPIA 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 L+ YL H R L + +F S+ +++TR W +K + A + +++SPH Sbjct: 185 RENLKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEV-KKEVSPH 243 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 LRH+FATHLL GADLR VQ +LGH+D++TTQ+YTH+ E L+++H+ +HPR Sbjct: 244 TLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHPR 296 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 123/305 (40%), Positives = 172/305 (56%), Gaps = 15/305 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 + +L + +E+ LA NTL AYRRDL+ +L G + + +G Sbjct: 57 VTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPGDITRHHVTGFVRALSDGS 116 Query: 67 -----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 S+AR + AVR L ++ E DP++ + P +RLPK ++ +V R+ Sbjct: 117 DGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPPMAGKRLPKAITVDEVTRI 176 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG-------VVRVIGKGN 174 L+A D LRD+A+LE LY+TG R+SE VGL + DISL +VR+ GKG+ Sbjct: 177 LEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAIVRLFGKGS 236 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KERLVPLG LE YL GRP L G LF + R +++RQ+ W +K A Sbjct: 237 KERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKVAAEK 296 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 A I + +SPH LRH+FATHLL GAD+RVVQ LLGH+ ++TTQ+YT V + LR+++ Sbjct: 297 ANI-TRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAA 355 Query: 294 HHPRA 298 HPRA Sbjct: 356 AHPRA 360 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 111/298 (37%), Positives = 183/298 (61%), Gaps = 3/298 (1%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA 60 Q + +F D L EKN + +T+ +Y+RDL + +L +G+ + + L + + Sbjct: 9 PQIQQDMRRFADYLEEEKNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYIL 68 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + + G+ +S +R ++++R F +L + K +DPS +L +P + ++ P+ L+ + + Sbjct: 69 QMEKEGFSTSSVSRTIASIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQ 128 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL P +D +RDKAMLE+LYATG+RVSEL+ + ++D+++ G V +KER++P Sbjct: 129 LLNQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDVNMAMGYVLCRD-SDKERVIP 187 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G EA L+ YLE R LL G + LF + + M+RQ FW IK Y+ AGI ++ Sbjct: 188 FGTEAEKALKRYLEESRSVLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGI-TKD 246 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+F HL+ +GADLR VQ ++GHSD+STTQIY + R+R+++ + HPR Sbjct: 247 ITPHTLRHSFGAHLVQNGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPRG 304 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 134/303 (44%), Positives = 190/303 (62%), Gaps = 6/303 (1%) Query: 1 MKQDLAR---IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQ 56 M +D A +E +L L +E+NL+ NTL AY DL +++ L G+ + L Sbjct: 1 MARDEALEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALL 60 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 L E G A S AR AVR LF++L E+ E DP+ +A PK +LP+ LS Sbjct: 61 GFLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSRE 120 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 +V RL+ AP +D PL LRD A+LE +YATG RVSE L +S + L QG+V + GKG+K+ Sbjct: 121 EVVRLIAAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQ 180 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV-LFPSQRAQQMTRQTFWHRIKHYAVLAG 235 R+VPLG+ A+ L +LE GRP L+ + +F ++R +++RQ + R++ +AV AG Sbjct: 181 RMVPLGDCALVALLAWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAG 240 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 I + +SPH LRH+FATHL+ GADLR VQ LLGH+D+STTQ+YTH++ +R + HH Sbjct: 241 I-TRDISPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHH 299 Query: 296 PRA 298 PRA Sbjct: 300 PRA 302 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 127/331 (38%), Positives = 175/331 (52%), Gaps = 42/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG----------------------- 44 I+ FL L +EK + +T+ +Y+RDL V R Sbjct: 9 IDAFLRWLRVEKGYSGHTVASYQRDLREFVASAGRRSAPAPTAVGRKGRGRGRAAAAPLP 68 Query: 45 -------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPS 97 L +A + ++A + +S AR LSA+R F++L + DDP+ Sbjct: 69 AEDPAAELDVAQLDATRVRAFVYSLHGRNKS-SSVARKLSALRSFFRFLRKNGIINDDPA 127 Query: 98 AHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTM 157 A +A+PK LP LS +V LL+ P RD+A+LE+LYATGLRVSEL GL + Sbjct: 128 AAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLDL 187 Query: 158 SDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL----------LNGVSID 207 + + L G+VRV+GKGNKERLVP+G AV +E YL + L D Sbjct: 188 AQLDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARGAD 247 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 L + R ++T ++ +K YA AGI + ++SPH LRH+FATHLL GADLRVVQ L Sbjct: 248 PLLVNSRGGRLTSRSIERLVKMYAERAGIAA-RVSPHALRHSFATHLLEMGADLRVVQEL 306 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGH+ LSTTQ YTH+ + L ++ Q HP A Sbjct: 307 LGHASLSTTQRYTHLNLDHLTAVYDQAHPLA 337 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 183/295 (62%), Gaps = 4/295 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH--HRGLTLATAQSDDLQALLAERLE 64 I QF D L LE++L+ N++ AY D+ +++L + + +Q L E Sbjct: 6 LIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEYITE 65 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G A S AR+LS ++ F++L E+ R++DPS+ + SPKL ++LP LS ++E++L A Sbjct: 66 LGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLA 125 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + P +R++AMLE LY+ GLRVSEL L +S++ G V+V+GKGNKERLVP+G + Sbjct: 126 IDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKVLGKGNKERLVPIGRD 185 Query: 185 AVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A ++ Y R L + + + +F ++R +++R + IK+ AV G+ + +SP Sbjct: 186 ARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGL-KKTVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H RH+FATHL+ GADLR VQ +LGH ++TT+IYTH+ + L+Q+ + HPR+ Sbjct: 245 HTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 123/299 (41%), Positives = 172/299 (57%), Gaps = 8/299 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +E F+ L +NL+ NT AY DL V WL L L++ LA+ Sbjct: 45 LMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHKQLRSYLAQLYAAR 104 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y + + R LSA+R +++L R+ + D +A LASPK+P+ LP LSE+ +E+LL Sbjct: 105 YASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVLSESSIEKLLATCQ 164 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D LRD+A+LE+LYATG R+SE L +SDIS VR+ GKG+KER+VP+ E Sbjct: 165 EDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYPECA 224 Query: 187 YWLETYLEHGRPWLLNGVSIDV-------LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 L YL RP LL+ +F S R + M+ Q + +HY L+ + E Sbjct: 225 RILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHLQ-E 283 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PH +RH+FAT LL+HGADLR VQ LLGH+ L+TTQIYTHV+ L+ ++ +PRA Sbjct: 284 IATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPRA 342 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 113/301 (37%), Positives = 176/301 (58%), Gaps = 5/301 (1%) Query: 1 MKQDL----ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQ 56 M+ + ++ + L LE+N + NTL AY+ DL ++ + + ++ + +DLQ Sbjct: 1 MESNKKTTTDIVKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQ 60 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + E TS AR+LS VR +++L + + E DP+ L SP+L + LP+ LS Sbjct: 61 HFAGQLHEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTE 120 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 +V+ + + + +P R+KA++EVL++ GLRVSELV L +S++ L +G +RV GKGNKE Sbjct: 121 EVDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKE 180 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 RLVP+ +A+ L + + D +F ++R +TR +K A AGI Sbjct: 181 RLVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGI 240 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + +SPH LRH+FAT LL GADLR +Q++LGH + TT+IYTH+ T LR+ HHP Sbjct: 241 Q-KTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHP 299 Query: 297 R 297 R Sbjct: 300 R 300 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 116/294 (39%), Positives = 173/294 (58%), Gaps = 3/294 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 I+QF+ + +EKN ++ T++ YR+D+ ++ G+ + + D++ ++E ++ Sbjct: 8 LIDQFVRYVQVEKNGSKWTIDHYRKDVQQFAAFMSAAGIAEIKDVKHQDVRLFISELVDK 67 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y S AR LSA+R ++L E ++P H PK RLP L E ++E L A Sbjct: 68 KYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLAL 127 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 ++PLE RDKA++E+LYATG+RVSE L + VRV GKG KER VP+G+ A Sbjct: 128 PANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETVRVFGKGRKERYVPVGKMA 187 Query: 186 VYWLETYLEHGRPWLLNG-VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 V +E+Y+ RP LL LF + R ++ ++ ++ A + +K+SPH Sbjct: 188 VSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEKRLDEAAMQ-KKISPH 246 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +RH+FATHLLN GADLR VQ LLGH L TTQ+YTHV+ ERL +++ HPRA Sbjct: 247 AIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 129/297 (43%), Positives = 178/297 (59%), Gaps = 6/297 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLE 64 ++E FL L E+NL+ NT+ AYR DL E+LH R L DD+ A L + E Sbjct: 3 EQVEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRE 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 Y +++ AR ++AV+ F +L + DP+ + SPK+ + LP+ L+ QV+ LL+ Sbjct: 63 RRYASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLEL 122 Query: 125 PLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 PL P +RDKAMLE+LYATG+RVSELV L ++D+ L + VR IGK + R++P+ Sbjct: 123 PLRSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPING 182 Query: 184 EAVYWLETYLEHGRPWLLNGV--SIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A LE Y + R L G S + LF + R +++TRQ FW +K YA G+ L Sbjct: 183 SAATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLS--DL 240 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PHVLRH+FA H+LN G DLR VQ LLGH+ +STTQIYTH+ E H PRA Sbjct: 241 TPHVLRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTHLNHESSHTPHAHPAPRA 297 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 165/294 (56%), Gaps = 5/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 + F + EK + +T + Y RDL + G+ L + ++ +A Sbjct: 10 EPLAAFYTYMRSEKQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASLHR 69 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G S R LS++R FQY R + +P+ +A+PK P++LPK L Q + + A Sbjct: 70 QGLAGKSLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFV-A 128 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D + RD+A+LE++Y++GLR++E+ L + DI +V V GKG+K R +P+G Sbjct: 129 VEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGSV 188 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L+ +L + S LF +QR ++++ + R++ +V G+D+ + PH Sbjct: 189 AIAALKDWLSQREQY--APASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDN-PVHPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH+FA+H+L DLR+VQ LLGH+++STTQIYTH+ + L +++ + HPRA Sbjct: 246 MLRHSFASHMLESSGDLRLVQELLGHANISTTQIYTHLDFQHLAKVYDKAHPRA 299 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 149/291 (51%), Positives = 199/291 (68%), Gaps = 2/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE F+D LW + L++ TL+AYR DL + + L + L +A + + +LA+ + GY Sbjct: 9 IELFIDYLWTQVGLSDATLSAYRGDLQQVQKILAD--VPLKSATIEQMMQVLAQFHDRGY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 TS AR+ S++ R F Y +K R ++P L K+ + LP+ +SE+ VE LL AP + Sbjct: 67 SHTSMARMRSSLNRFFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDV 126 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L LRD+AMLE+LYA GLRVSELVGLT+ I+L G V+++GKG+KERLVP GE A Sbjct: 127 QTILGLRDRAMLELLYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHE 186 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 WL+ Y++ RP LL D +F SQR ++RQ FW+R+K Y G+DS K+SPH LR Sbjct: 187 WLQRYIQEARPQLLGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLR 246 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HAFA+HLL HGADLR +QMLLGHSDLSTTQIYTH+A +RL+ L +HHPRA Sbjct: 247 HAFASHLLAHGADLRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 6/299 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQALLAER 62 + I F L +E+ +E T+ AY D+ ++L G L D+ ++ Sbjct: 1 MELISLFKQYLTVERQYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYL 60 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + TS +R +SA+R +++L + + +P + K +LP E ++ L Sbjct: 61 FDRHLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLF 120 Query: 123 QAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 +A + +LR+ A+LEVLY TG+RVSE L SDI + V+GKGNKER VP Sbjct: 121 EAVYQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPF 180 Query: 182 GEEAVYWLETYLE-HGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 G A L+ Y + P+L + + +F + A+ +T + + + ++ + Sbjct: 181 GRYAKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGK 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH+LRH+FAT LLN+GADLR VQ LLGHS LSTTQIYTHV E+L++ ++++ PR+ Sbjct: 241 -IHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFPRS 298 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 107/298 (35%), Positives = 175/298 (58%), Gaps = 6/298 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 K++ +I+ F L E+N + +TL AY+RD+S +L + L + A D++ L E Sbjct: 21 KENNEKIDSFEKYLNAERNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEE 80 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLA-SPKLPQRLPKDLSEAQVER 120 + AR L+ + +++L K +++ + S K +++P L+E +++ Sbjct: 81 LGNKKLSRATLARKLAVLHSFYKFLIINKIIKENFIESMPASLKKDKKVPSFLTENEMQM 140 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL P L+ RD+AM+E+ Y+ GLR+ ELV L + +I VV V GK NKER+VP Sbjct: 141 LLNLPD----LKPRDRAMIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERIVP 196 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G+ ++ ++ Y+ R L +F S RA+++ ++T + Y V AG ++K Sbjct: 197 VGDICLHAIKDYINKRRNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGF-TKK 255 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH FATH+L+ G DLR VQ +LGH +LS+TQIYTHV E L++++++ HPRA Sbjct: 256 VSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIYTHVTIESLKKVYKETHPRA 313 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 149/296 (50%), Positives = 187/296 (63%), Gaps = 8/296 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 A I +F A+ L + L+ T NAY RDL + L D+ L Sbjct: 22 AYITEFRQAM-LARGLSTRTRNAYVRDLKLCET---THSKALTLWSDMDVMQCLTALDRQ 77 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G + AR+LS++R+ + ++ + RED+P + +PK+ + LPKDLSE VE LL AP Sbjct: 78 GKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAP 137 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L LRDKAMLEVLYA GLRVSEL+ L++ ++L G +++ GKGNK RLVPLGE A Sbjct: 138 DTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYA 197 Query: 186 VYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 L+ YL H R L L + +F + + MTRQ FW+ IK YA AGI S+ LS Sbjct: 198 SDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSD-LS 256 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRHAFATHLLNHGADLR VQ+LLGHSDLSTTQIYTHVAT RL+QLH+ HHPR Sbjct: 257 PHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAHHPRG 312 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 3/290 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++++L+ L +E+ LAENTL AY DL + +L RG LA L + + G Sbjct: 28 MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGM 87 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR L+ +R F + E E DP+ L +PKL + LP L+ ++ +L P + Sbjct: 88 AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDL 147 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 L RD+ MLE++YA GLRVSEL L D + GVVRV GKG KER+VP+ + Sbjct: 148 SDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCA 207 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 + YL RP +F ++ + ++RQ W +K + AGI + +SPH R Sbjct: 208 LVTAYLRDWRPAF--SPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGI-HKDISPHTFR 264 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FATHLL GADLR VQ+LLGH+D+S T+IYTHV +RLR++H HHPR Sbjct: 265 HSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPR 314 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 135/299 (45%), Positives = 183/299 (61%), Gaps = 2/299 (0%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M ++ FL + +EK LAEN++ AY RDL +E L G+ ++QA L Sbjct: 17 MSALEPALDLFLAHVRVEKGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRSEIQAHL 76 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 AE + G S AR LSA+R L + L E+ DPS + SP+ +RLP LS +V+ Sbjct: 77 AELVRRGLSPRSQARALSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVD 136 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RLL AP + +RD+AMLE+LYATGLRVSELV L ++D++L V+ GKG+KER+V Sbjct: 137 RLLAAPDVRSAAGIRDRAMLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGDKERIV 196 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+G A ++ YL R LL+G LF + R +MTRQ F + A AG Sbjct: 197 PVGAPAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAG-IRR 255 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++SPH LRH+FATHLL GADLR VQ +LGH+D+STTQIYTHV +++L+ + HPRA Sbjct: 256 RISPHKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 4/300 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M+ D A + FL + EK +++T+ Y RDL+ + +L + + A L+ + Sbjct: 10 MQIDKA-VSIFLKFMQQEKGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFV 68 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A + G ++ R ++ ++ F ++ ++ +D+P+ L PK Q+ K + + Sbjct: 69 AMLFDKGLAKSTIERKIACLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSII 128 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL AP D+P +RD + E++Y TG+RVSELVGL +SDI + V GKG KER+V Sbjct: 129 ALLDAPDKDKPAGMRDALIQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIV 188 Query: 180 PLGEEAVYWLETYLEHGRPWLLNG-VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P+ + + + YL+ + +F ++ ++T ++ ++ Y +AG+ Sbjct: 189 PIADMHIEMINDYLDVKMDICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPM 248 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + SPH RH++ATHLL GADLR +Q LLGH L+TTQ YTH+ L +++ HP A Sbjct: 249 D-FSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFA 307 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 167/292 (57%), Positives = 198/292 (67%), Gaps = 4/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAERLEGG 66 IE F DALWLE L++NTL+AYRRDL++ +WL G ++ L +A R +G Sbjct: 53 IELFCDALWLEHGLSQNTLDAYRRDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDG- 111 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KATSS R LS RR + + RE DP+ L S K P R P LSEAQVE LL AP Sbjct: 112 -KATSSNRRLSVFRRYYGWALREHRAALDPTLRLLSAKQPARFPATLSEAQVEALLAAPE 170 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + L LRD+ MLE++YA+GLRVSELV L ++ L GVVRV+GKG+KERLVP GE A Sbjct: 171 VGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAH 230 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+E YL RP LL + D LF + R + MTRQ FW+ IK +A+ A I + LSPH L Sbjct: 231 GWIERYLREARPALLGARTSDALFVTARGEGMTRQQFWNIIKRHAMRAEIRA-HLSPHTL 289 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RHAFATHLLNHGADLRVVQMLLGHSD+STTQIYTHVA ERLR LH HHPR Sbjct: 290 RHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPRG 341 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 120/299 (40%), Positives = 172/299 (57%), Gaps = 8/299 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---LTLATAQSDDLQALLAER 62 +E FL L E+ + T++AYR D+ ++ R A ++ L Sbjct: 8 EALEGFLLYLKGERQASPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYLGWL 67 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G + +S R L+A+R +++L R + P A L+ P+ +RLP LS A++E+LL Sbjct: 68 NQLGQQRSSMNRKLAALRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLL 127 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + PL LRD+A+LE LYA+G+RV+ELVG+ D+ L G RV+GKG +ER+VPLG Sbjct: 128 -SIPATTPLGLRDRAILETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLG 186 Query: 183 EEAVYWLETYLEHGRPWLLN---GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 AV LE YL RP L LF + ++T + R+ HY A + Sbjct: 187 RYAVKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAAL-RR 245 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH +RH FATHLL GADLRVVQ LLGH L+TTQIYTH++ +LR++++Q HPRA Sbjct: 246 GVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRA 304 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 113/291 (38%), Positives = 169/291 (58%), Gaps = 5/291 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 I+ FL + EK L+ NT+ AY RD+ + + + + + L A L Sbjct: 16 IKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVEPEHLIAFLGSLKSAD 75 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y ++ +R L +++ F +L RE E +PS L SPKL Q LP L +V+ L+ P Sbjct: 76 YATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQPD 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +RD+A+ E+LY +GLRVSE+ LT+ I +RV GKG+KER+VP+G +A+ Sbjct: 136 NKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSID--DQYIRVYGKGSKERIVPIGSQAL 193 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL R W + LF + R + M R + W IK YA AGI ++ +SPH L Sbjct: 194 MAVDQYLSLYR-WQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQAGI-TKTISPHTL 251 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FATHLLN+GADLRV+Q LLGH+++S+T YT V++ L++ + HP+ Sbjct: 252 RHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPK 302 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 105/290 (36%), Positives = 165/290 (56%), Gaps = 2/290 (0%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 ++ L +EK + +T++ Y++D+ + + + D++ LA + GY Sbjct: 14 RDYMRYLQIEKGASPSTISQYQKDICAFFQNM-DHTKPVEDVNHQDIRRYLALLQKDGYA 72 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 + AR L+++R L+++L RE + +P ++ +PKL ++LP L E +++ + A D Sbjct: 73 RRTVARKLASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTD 132 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 L R+ A++E+LYA+G+R SE GL + DI L + V+GKG KER +P+G AV Sbjct: 133 SLLGARNLAIIELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSFAVEA 192 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRH 248 L YL+ D LF + R +T + + A + S+ L+PHV+RH Sbjct: 193 LSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSK-LTPHVIRH 251 Query: 249 AFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATH+LN GADLR VQ LLGH+DL TQIYTHV +RLR +++ HPRA Sbjct: 252 TFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRA 301 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 364 bits (937), Expect = 1e-99, Method: Composition-based stats. Identities = 119/303 (39%), Positives = 167/303 (55%), Gaps = 15/303 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I+ F L + L++NT AYR DL + L G L +DL+ +++ + Sbjct: 7 IDAFDAYLKANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQSSKRH 66 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S AR AVR F + + +P+A L +PK+P LP LSE+Q E+L+ Sbjct: 67 -ARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVD 125 Query: 127 IDQPL-----------ELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 P LR+ AMLEVLYATG+RV+ELVGL + D++ ++V GKGNK Sbjct: 126 EQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGKGNK 185 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R+VP G A + +LE GRP L+ S D LF + ++ ++ + A AG Sbjct: 186 QRVVPFGVPAEQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAG 245 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + +SPH LRH+ ATHLL+ GADLR VQ LLGHS L TTQ YTHV+ E+L+ + Q Sbjct: 246 VP--DISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAF 303 Query: 296 PRA 298 PRA Sbjct: 304 PRA 306 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 364 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 163/301 (54%), Gaps = 18/301 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----------HHRGLTLATAQSDDLQ 56 + QFL L EK + +T+ AY DL+ + + + ++++ ++ Sbjct: 3 VTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPVR 62 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 L + + + +R LSA++ F YL E +P+ +++PKLP+ +P+ L+ Sbjct: 63 GFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVD 122 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 ++ LL + ++ R++A+ E+ Y+TG+RVSEL L + DI +VRV GKGN+E Sbjct: 123 ELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNRE 182 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 RLVP+G+ A+ ++ Y LF ++ A + + + + G+ Sbjct: 183 RLVPVGDRALKAVDDYRTCIDGEF------GALFLNRDAHRFSDSSIRRVLSVLVKACGL 236 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 +SPH LRH+FATH+L+ GADLR +Q +LGH+ LS+TQIYTHV RL +++ + HP Sbjct: 237 -GVPVSPHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTHVTYARLMEVYDRAHP 295 Query: 297 R 297 R Sbjct: 296 R 296 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 364 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 115/292 (39%), Positives = 173/292 (59%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + FL L E+ L+ +T+N Y+RDL L + T D+++L A G Sbjct: 12 VNTFLTHLASERRLSPHTVNGYQRDLIEARTLLGSQ--PWDTLTVHDMRSLAASLHRQGK 69 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA-PL 126 + R+LS +R F+YL RE D+P+ + +PK +RLPK L QV LL A Sbjct: 70 SGKTIQRMLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGTS 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +PL LRD+A++E+LYA GLR++EL+ L + I L + + V GKGNK R +P+G+ A+ Sbjct: 130 NSEPLALRDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPAL 189 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 + +L+ RP L+ + LF S+ ++++ + R+K +A+ G+D+ L PH L Sbjct: 190 TAVRRWLQ-VRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDA-HLHPHKL 247 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL DLR VQ LLGH+DL+TTQ+YTH+ + L Q++ HPRA Sbjct: 248 RHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRA 299 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 129/297 (43%), Positives = 180/297 (60%), Gaps = 3/297 (1%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAE 61 ++ +LD L +E+ LA TL AY DL+ +V G+T + + L Sbjct: 29 DLATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVA 88 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G A+S+AR LSAVR ++L RE+ E DP A + P++ +RLPK LS ++ L Sbjct: 89 LGQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALL 148 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 ++AP LRD+AML V+YA GLRVSE+V L ++DI R+G+V +GKG K RLVPL Sbjct: 149 IEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPL 208 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 GE A+ ++ YLE R + VLF S R +TRQ W + YA GI ++ Sbjct: 209 GEPALAAIDAYLEL-RATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGI-AKPS 266 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH+FATHLL GADLR VQ LLGH+++ TT+IYTH+A + +R +++ HPRA Sbjct: 267 SPHKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 364 bits (935), Expect = 2e-99, Method: Composition-based stats. Identities = 112/296 (37%), Positives = 174/296 (58%), Gaps = 4/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAER 62 A ++ F L LE++L+ N++ AY RD+ +V++L + DLQ+ + Sbjct: 21 DAYLKGFRSYLQLERSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWI 80 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G ATS AR++S ++ ++YL E DP+ L +PK ++LP LS ++E+++ Sbjct: 81 ATLGMTATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQII 140 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 P R++A+LE +Y+ GLRVSE+ L +S + G +RV+GKG+KERLVP+G Sbjct: 141 GQIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIG 200 Query: 183 EEAVYWLETYLEHGR-PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 +AV ++ Y + R + D+LF ++R +TR + IK AGID +++ Sbjct: 201 SDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGID-KQV 259 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 SPH RH+FATHL+ GADLR VQ +LGH ++TT+IYTH+ E LR Q+ HPR Sbjct: 260 SPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 117/296 (39%), Positives = 168/296 (56%), Gaps = 4/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA-TAQSDDLQALLAERL 63 L+ + FL L +EK ++ T+ +Y DL V +L G+ A D L + +A+ Sbjct: 18 LSSVRDFLSFLSIEKGSSDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLS 77 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 GY A S R +SA++ +L R+ DP+ L P +P RLP LS QV LL Sbjct: 78 GRGYAAASIERHVSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLD 137 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + PL +R+ LE+LY GLR SEL GL D L +G++R++GKG++ER+VP+G Sbjct: 138 QEFREGPLGVRNACALELLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGG 197 Query: 184 EAVYWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 A L +YLE RP L + + + R +++RQ+ ++ + GI + L Sbjct: 198 SAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGI--KDLH 255 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLL GADLR +Q +LGHSD+STTQIYTHV +R+ + HPRA Sbjct: 256 PHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRA 311 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 125/312 (40%), Positives = 181/312 (58%), Gaps = 20/312 (6%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQAL- 58 M + ++ +FL+ L +++ + +T+ AYR DL+ ++ RG T++T D L Sbjct: 1 MDELAHQVARFLEFLATQRSASPHTIAAYRNDLNGFSSFVRSERGNTVSTKTVDHLLLRL 60 Query: 59 --------LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 110 L ++ GY +S R L+AVR F +L R + E +P+ +A+PK QRLP Sbjct: 61 YLASLNGGLDKQQRAGYAKSSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLP 120 Query: 111 KDLSEAQVERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 L+ Q L++AP +QP RD A+LE+LY++GLRVSEL GL ++D+ G+V Sbjct: 121 FHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMV 180 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRI 227 RV GKG KER+VP+G A+ LE YL LF R ++ R+T + Sbjct: 181 RVQGKGGKERIVPVGSAALEALEQYLAGR----GQLADDAPLFLGCRGARINRRTVAQLV 236 Query: 228 KHYAVLAGIDS-EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 K +A +GI + +SPH LRH FATH+L GADLR +Q LLGHS LSTTQ YTHV +R Sbjct: 237 KRWA--SGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDR 294 Query: 287 LRQLHQQHHPRA 298 L +++ + HPRA Sbjct: 295 LLEVYDKAHPRA 306 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 117/296 (39%), Positives = 178/296 (60%), Gaps = 7/296 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 E+FL + +E+ + T+ AYRRDL +L + + + QS ++ +A G Sbjct: 8 ERFLTWMTIEQGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKA 67 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 A S AR+ +AVR + +YL E+ R D+P++ + K+P +PK LSE +V R+L + Sbjct: 68 AKSVARMYAAVRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGV 127 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 LRD+A+LE LYATG R+SE GL++SD+ + +VR+ GKG+KER+VP G A Sbjct: 128 DSFALRDRALLEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAA 187 Query: 189 LETYLEHGR------PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 LE +L G D +F R +++RQ W ++ +A +A + +++S Sbjct: 188 LEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEV-GDEVS 246 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+ ATH+L HGADLR+VQ LLGH+ +STTQ+YT V E L ++++ HPRA Sbjct: 247 PHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M+ L + FL L +EK + +T+ Y R L W D ++ L Sbjct: 2 MRIPLEPEQDFLQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLF 61 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + L+ +S +A+R ++++ R E +P ++ P+ + LP L+ Q+ Sbjct: 62 QELKDEAATSSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLE 121 Query: 121 LLQAP-------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKG 173 LL+ P L RD A+LE+ Y+ G+R+SELVGL + + R V+V+GKG Sbjct: 122 LLELPYKTAVPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKG 181 Query: 174 NKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL 233 KER++P+G A+ LETY+ + LF S+ +++ ++ + Y L Sbjct: 182 RKERILPVGTPALAALETYVS-----MACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKL 236 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 + I +SPH +RH FATH+L GADLR VQ LLGH+ LSTTQIYTHV R+ ++++Q Sbjct: 237 SSIPF-TISPHKIRHTFATHILEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQ 295 Query: 294 HHPRA 298 HPRA Sbjct: 296 AHPRA 300 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 363 bits (932), Expect = 5e-99, Method: Composition-based stats. Identities = 103/289 (35%), Positives = 158/289 (54%), Gaps = 2/289 (0%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 F + L E+ L++NT+ AY D+ + + D + + + G Sbjct: 5 DFKNYLSFERQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSP 64 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S R AV+ ++YL ++DP L SPKL Q++P+ L++ ++ RLL P Sbjct: 65 KSVFRKTQAVKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPP-KT 123 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 E+R +LE+ YA GLRVSELV L + ++L+ V GKG K+R +P+ + AV L Sbjct: 124 FAEIRTLTILELFYACGLRVSELVSLRIESVNLKDKWVLAYGKGAKQRFIPIHDRAVKVL 183 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 E YL +L S +F ++ ++++R + W + LAGI+ L PH+ RH Sbjct: 184 EIYLSEREKYLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIE-RSLHPHLFRHT 242 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL GADLR +Q +LGH+DL TTQIYTH+ + L++ H++ HPR Sbjct: 243 FATHLLIGGADLRSLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPRG 291 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 362 bits (931), Expect = 8e-99, Method: Composition-based stats. Identities = 119/295 (40%), Positives = 178/295 (60%), Gaps = 5/295 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERLEGG 66 + F+D L E+ L+ NT AYR DL +WL RG + + + L + G Sbjct: 6 LNLFIDYLVTERGLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDLG 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + + AR L AV+ L ++L E + D +A + SPKL + LP LSEA+V+ L+A Sbjct: 66 RETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAFP 125 Query: 127 ID--QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 +P E+R++A+LEVLY++GLRVSEL L ++ + ++RV+GKG+K R+VP+G+ Sbjct: 126 ASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGKV 185 Query: 185 AVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ L YL RP L +F S+ + + R+ W+ +K A AGI + + P Sbjct: 186 ALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGI-HKNIHP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FA+HLL HGADLRV+Q +LGH+D+STT+IYTH+ + RL +H + HPR Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPRG 299 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 362 bits (930), Expect = 9e-99, Method: Composition-based stats. Identities = 114/295 (38%), Positives = 173/295 (58%), Gaps = 8/295 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAERL 63 L+ +E FL L +E+ ++ +TL+AYRRDL+ ++ W +G +A S L+ + Sbjct: 28 LSAVEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEH 87 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S R LSA R + +L + P+A L +PK P++LP+ L + RL++ Sbjct: 88 RRGLSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVE 147 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P D PL LRD+A+LE+ Y++GLR+SEL L D+ L G+V V+GKG K+RLVP+G Sbjct: 148 VP-TDAPLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGS 206 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 AV L + G + +FP + ++++ RIK AV G+ + + P Sbjct: 207 HAVAALRAW-----QRDSGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGM-FKHVHP 260 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FA+H+L DLR VQ LLGHSD++TTQIYTH+ + L +++ HPRA Sbjct: 261 HMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRA 315 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 108/295 (36%), Positives = 170/295 (57%), Gaps = 6/295 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAER--LEG 65 ++FL L +E+ +E T AY D+ +L G L A+ ++ L+ Sbjct: 8 QKFLRYLIVERGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALADHRS 67 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 Y S +R ++++R +QYL +E+ +++P +++ K RLP+ E +++ L + Sbjct: 68 SYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSV 127 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D PL+LR++A+LEVLY +G+R+SE L++SDI V+ + GKGNKER PLG A Sbjct: 128 AGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFA 187 Query: 186 VYWLETYLEHGRPWLLNG--VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 L+ Y GR L+ D++F + + +T + + + +DS+ + P Sbjct: 188 QDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD-IHP 246 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH FATHLLN+GADLR VQ LLGH++LSTTQIY HV E L++ ++ HPRA Sbjct: 247 HMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 114/294 (38%), Positives = 162/294 (55%), Gaps = 5/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLE 64 + FL L ++ + T+ AY DL +L R D+ A LA+ Sbjct: 12 VALFLLYLDAQRGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLHR 71 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G +S R LSA+R +++L + K +DP A LA+PKLP+ PK L+ Q L++ Sbjct: 72 RGLAKSSVCRKLSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVET 131 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + P LRD A+LEVLY +GLRVSE +GL + + L Q +VRV+GKG KERLVPL Sbjct: 132 EITLDPEGLRDLALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTGP 191 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A L Y+E R +F +R +++R+ +K AV +G +SPH Sbjct: 192 AAERLARYIEQ-RGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPC-SISPH 249 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+H+L GADLR VQ LLGHS +STTQ YTH+ ++ +++ HP A Sbjct: 250 TLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLA 303 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 361 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 106/289 (36%), Positives = 177/289 (61%), Gaps = 6/289 (2%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGGYKA 69 + D L +EK +++TL+ Y+R L + + L G+ T S ++ ++A+ + G A Sbjct: 15 YWDYLRIEKQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGA 74 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S A L A+R+ F YL R++ +P+ + +PK +RLPK++ Q+ +LL + + Sbjct: 75 KSIALRLVALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTS-DSHE 133 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 P +LRD AM+E++Y++GLR+SEL GL + D+ L VR++GKGNKER+VP+G +A+ L Sbjct: 134 PSDLRDLAMMELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEAL 193 Query: 190 ETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 +L + + +F ++R +++ ++ ++ + G++S L PH LRH+ Sbjct: 194 NRWLAVRNQF---KPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLES-HLHPHKLRHS 249 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATH+L DLR VQ LLGHS+L+TTQIYTH+ + L +++ HPRA Sbjct: 250 FATHMLEASGDLRAVQELLGHSNLATTQIYTHLDFQHLAKIYDAAHPRA 298 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 361 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 115/294 (39%), Positives = 176/294 (59%), Gaps = 8/294 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 Q++ L +E+ A NT+ +YRRDL+ ++++ R +L + + D++A L G Sbjct: 71 RQWITYLTVERGKARNTIASYRRDLASYLDFVGER--SLDSIAATDIEAFLQSLGRHGLA 128 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 TS R+LS +R + E DD + + P +PQ LP LS ++ L+++ D Sbjct: 129 VTSVRRMLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGD 188 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDI---SLRQGVVRVIGKGNKERLVPLGEEA 185 + LR+KA+LE+LY TG R+SE++ L + DI G++ + GKG+K+R+VP+G A Sbjct: 189 SAVALRNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHA 248 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQ-MTRQTFWHRIKHYAVLAGIDSEKLSPH 244 ++ YL GRP L G LF + R + M+RQ+ W +K A AGI ++ +SPH Sbjct: 249 RQAVDAYLVRGRPQLNKGK-SAALFLNVRGGKAMSRQSAWQVVKQAATEAGI-TKDISPH 306 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GAD+R VQ LLGH+ ++TTQIYTH+ + LR + + HPRA Sbjct: 307 TLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 361 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 108/312 (34%), Positives = 169/312 (54%), Gaps = 20/312 (6%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT---LATAQSDDLQALLAER 62 A ++ FL L +E+N + +T+ AYR D+ + + + + + + + ++ Sbjct: 3 AALDGFLQYLRVERNASSHTVEAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSSL 62 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E G S R LSA+R F+Y+ R + D+P L K Q LP +S Q++ L Sbjct: 63 FEAGDSKRSIQRKLSALRSFFRYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLT 122 Query: 123 QAP----------------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 +A + RD AM+EV+Y+ GLR+SE GL M DI L G+ Sbjct: 123 KAVGEYWEMAAANGISKSDEAAEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGI 182 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 RV GKG KER+ LG + L Y + +F ++ +++T ++F Sbjct: 183 ARVRGKGKKERIAVLGRPSQKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRN 242 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K+Y + A + + L+PH LRH+FATHLL+ GADLR VQ +LGH +LSTTQIYTHV+ ER Sbjct: 243 LKNYLIAANLPPD-LTPHKLRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAER 301 Query: 287 LRQLHQQHHPRA 298 +++++++ HPRA Sbjct: 302 MKEVYKEAHPRA 313 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 115/295 (38%), Positives = 175/295 (59%), Gaps = 4/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERL 63 +I+ F L E+N ++NTL+AY RD+ + ++ G +++Q L + Sbjct: 6 EKIKDFESFLKYERNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEYLFQLS 65 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + + S AR +S+++ F+YL ++ RED+P+ L SPKL LP LS VER+++ Sbjct: 66 KQKFSERSQARWISSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIK 125 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 A I L R++ M+EVLY GLRVSEL+ L +S+I+ ++ ++V GKG+K R VPL Sbjct: 126 AINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLAT 185 Query: 184 EAVYWLETYLEHGRPWL-LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 ++ Y++ R +N DVLF + R M+R + IK AGI+ +K+S Sbjct: 186 YTAKLIKEYIQEIRSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGIN-KKIS 244 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH RH+FATHLL +GADLR +Q +LGHS ++TT+IYTH+ E LR + HPR Sbjct: 245 PHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPR 299 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 157/305 (51%), Positives = 200/305 (65%), Gaps = 7/305 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 + +D I LDALW++ L+ +TLN+YRRDL + W + R LAT L L Sbjct: 20 LPEDATTIAHCLDALWIKHGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLT 79 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 R + Y S+ARL S +R F Y +R D+PS LA P LP LPK L+E+Q+E Sbjct: 80 WRTQQHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEA 139 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP I+ P LR++AMLE++YA GLRVSELV L ++ ++ RQGV+R+ GKG KERLVP Sbjct: 140 LLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVP 199 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDV-------LFPSQRAQQMTRQTFWHRIKHYAVL 233 LGEE+ +WL+ YLE RP L I LF + ++++RQ FW IKHYA L Sbjct: 200 LGEESQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAAL 259 Query: 234 AGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQ 293 GI K+SPHVLRH+FATHLLNHGADLR +QMLLGH +STTQIYT +A + L+QLH Q Sbjct: 260 VGIAPNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQ 319 Query: 294 HHPRA 298 HHPR Sbjct: 320 HHPRG 324 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 116/293 (39%), Positives = 173/293 (59%), Gaps = 3/293 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERLEGG 66 +E FL L E +A NT++AYR D+ ++W + + L+ L L Sbjct: 25 LEPFLHYLEAECGMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRK 84 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 AT+ +R L ++ F+YL E + + L SPKL + LPK LS +V +LL AP Sbjct: 85 LAATTVSRHLVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPC 144 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 LRD+A+L ++YATG RV+E+V L ++ + L +G R +GKGNKER+V L AV Sbjct: 145 RQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAV 204 Query: 187 YWLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 +E YL H RP L + + LF ++ +Q++R W+ +K A G S+++SPH Sbjct: 205 AAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVG-CSKEVSPHT 263 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATH++ GA++R +Q LLGH+++ TTQIYTHV RL+ +HQ +HPR Sbjct: 264 LRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPRG 316 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 119/294 (40%), Positives = 181/294 (61%), Gaps = 9/294 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE-GGY 67 E++L L LE+NL+ NTL++YRRD + WL R +T + D+++ +A + G Sbjct: 14 ERWLRHLRLERNLSRNTLDSYRRDTDRYLAWLGARSVT--ELNTGDIESFMASLAKGEGL 71 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 A++ AR+L+AVR ++L E E D + +A P +PK LS A+V +L++ Sbjct: 72 AASTRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPN 131 Query: 128 DQPLEL---RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 D L RD+A+LE+LY+TG RVSEL+GL + D+ + ++ V GKG+KER+VP+G+ Sbjct: 132 DDAASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDP 191 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L+ YL RP N LF ++ +M RQ+ ++ + + AG+ +SPH Sbjct: 192 ALDALQHYLVRVRPAF-NKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAG--VSPH 248 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATHLL GAD+RVVQ LLGHS++ TTQIYT V+ + LR+ + HPR+ Sbjct: 249 SFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHPRS 302 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 177/312 (56%), Gaps = 21/312 (6%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--------------------LT 46 IE F+ L E+ L+EN + R L WL R + Sbjct: 4 AIEDFILYLATERGLSENYQLSTRLSLEGFARWLEKRNAGKEAESKDPLGEEEETLPEVA 63 Query: 47 LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLP 106 + LA + G A S ++ A++ F++L+ K E D + L P+ Sbjct: 64 PGEVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTE 123 Query: 107 QRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 + LP+ ++E QV+RLL+ ID P LRD+A+LE+LYA+GLRVSELV + ++ L + Sbjct: 124 RYLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARI 183 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 +RV GKGNK RLVP+G++A + YLE RP ++ + +F S R ++T W Sbjct: 184 IRVTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQI 243 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K A AG+D + PH+LRH+FATHLL++GADLR++Q +LGH+D+STTQIYTHV +R Sbjct: 244 VKACAKNAGLDI-NVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHVDQQR 302 Query: 287 LRQLHQQHHPRA 298 L+ +H + HPRA Sbjct: 303 LKAVHHRFHPRA 314 >UniRef50_C8WGZ0 Integrase family protein n=4 Tax=Coriobacteriaceae RepID=C8WGZ0_EGGLE Length = 323 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 116/306 (37%), Positives = 166/306 (54%), Gaps = 10/306 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 + + I+ F A+ +E+N + +TL AYR DL W + + A L+ L E Sbjct: 19 PRIVELIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGE 78 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 Y T+ R LSA+R F++L ++DP++ L PK P+ LP + + + +L Sbjct: 79 LDRAQYSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKL 138 Query: 122 L------QAPLID---QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 L A + ++ R+ A+LE LYA G RVSE GL +++ G V+V GK Sbjct: 139 LTVYGKRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGK 198 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 G+KER+VPL + AV + Y RP +L + D F S R +M K Sbjct: 199 GSKERIVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALR 258 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG+D E LSPH +RH FAT LL+ GADLR VQ +LGH+ LSTTQIYTH++ RL+Q+H Sbjct: 259 QAGLD-ESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTHLSPGRLKQVHA 317 Query: 293 QHHPRA 298 + HPR Sbjct: 318 RTHPRG 323 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 108/292 (36%), Positives = 170/292 (58%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 ++QF + L EK L+ +T Y++ L M E LH GL + ++ L + + G Sbjct: 17 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 76 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KA+S A LS++R F +L +P+ +++P+ + LPK+L +V +LL+ Sbjct: 77 MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLE-VN 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL +RD+A++E++Y GLR++ELV + + D+ LR G +RVIGKGNKER VP AV Sbjct: 136 EDDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAV 195 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+ +L+ L S LF S+ +++ ++ R+ + + S ++PH L Sbjct: 196 EWVGKWLKVR--SGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVAS-HITPHKL 252 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L +LR VQ LLGH ++STTQIYTH+ + L ++ Q HPRA Sbjct: 253 RHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRA 304 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 118/291 (40%), Positives = 169/291 (58%), Gaps = 6/291 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +E F L EK LA+NTL AYRRDL +L R + + + LA + + Sbjct: 5 LEDFFIYLASEKGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQH 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 Y + S R L A++ LF++L RE + + +PKL Q +P LS +++R+L P Sbjct: 65 YASASICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPN 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 I RDKA+LE LYA GLRVSEL L + D+ VRV+GKG KER+VP+G++A+ Sbjct: 125 IQTWRGARDKAILETLYACGLRVSELCQLKIYDVD--DTFVRVLGKGGKERIVPIGQQAI 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 ++ YL + LF +++++ +TR W +K YA A I + +SPH Sbjct: 183 AAIDGYLSFREG--GENSRNEFLFITKKSKPLTRALVWKLVKFYARQASI-FKSISPHTF 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH FATHLL+HGADLRV+Q +LGH+ +++T YTHV+ RL+Q Q HPR Sbjct: 240 RHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPR 290 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 163/295 (55%), Positives = 201/295 (68%), Gaps = 3/295 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERL 63 A+I++F D LWLE LA+N+L AYRRDL + WL RG TL A +DD+ A R Sbjct: 17 QAQIDEFCDTLWLEDGLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARH 76 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 E +S R L+ ++R +Q R+ DDP + S K P R+PK LSEAQVE LL Sbjct: 77 EVTKATSS-NRRLAVLKRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLA 135 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 AP + PL LRD+ MLE++YA+GLRV+ELV L ++ + +GV+R+ GKG K RLVP GE Sbjct: 136 APDVTTPLGLRDRTMLELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGE 195 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 EA W+E YL+ RP +L+G D LF + R MTRQ FW IK +A A I++ LSP Sbjct: 196 EARVWIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINA-PLSP 254 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRHAFATHLLNHGADLRVVQMLLGHSD+STTQIYTHVA ERL+ LHQ HHPR Sbjct: 255 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPRG 309 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 359 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 167/298 (56%), Gaps = 7/298 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR----GLTLATAQSDDLQALLA 60 I F + L LE + T+ AY+ DL ++ + + +++ Sbjct: 2 EKYIADFCNYLALE-GKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFR 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 E S AR +A+ F+Y R F +++P + PK LPK +E +V Sbjct: 61 FLNEKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRT 120 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL P D P +R+KA+LE LY++GLR+SEL G+ + DI L++G+VRV GKGNK+R+VP Sbjct: 121 LLSIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVP 180 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG A+ + YL+ RP + S D+LF ++ + + +K Y L ++ Sbjct: 181 LGSYAIEAINNYLK-VRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVA-KAKG 238 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH+FATHLL+ GADLR +Q LLGHS LSTT+ YTH++ E +++ +++ HPR+ Sbjct: 239 YSPHSLRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRS 296 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 359 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 122/291 (41%), Positives = 178/291 (61%), Gaps = 5/291 (1%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKA 69 F D L E +LA NT+ AYRRDL WL R + T + +L +A + Sbjct: 4 AFTDYLQSECHLAANTVAAYRRDLVRFERWLGAR--EIRTLRVGELSDYVAWLYKEELAP 61 Query: 70 TSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQ 129 S AR + +++ F+YL E +D+ L S K+ +R+P ++ +++ LL AP + Sbjct: 62 ASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWSED 121 Query: 130 PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWL 189 P RD+A+LEVLYATG R SE+ GL M D+ L +G V+ GKG+K+R+ PL +++ + Sbjct: 122 PYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSARVV 181 Query: 190 ETYLEHGRPWLLNGVSIDV--LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 +TYL+ RP L D LF S+ ++++R W +K YA AGID + +SPH LR Sbjct: 182 KTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPD-VSPHSLR 240 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+FATHLL GADLR VQ ++GH+ ++TTQIYTHV RL+++H Q+HPRA Sbjct: 241 HSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 359 bits (922), Expect = 8e-98, Method: Composition-based stats. Identities = 136/324 (41%), Positives = 185/324 (57%), Gaps = 32/324 (9%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--------------------HHRG 44 L ++ FL L E+ LA NTL AY+ DL +L RG Sbjct: 35 LPLLDFFLQYLAAERRLATNTLAAYQSDLLSFFAFLARATAPVAATVDAGATGTAGKDRG 94 Query: 45 ---------LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDD 95 + + L+A LA + S++R +SA+R F++L E+ D Sbjct: 95 AGLASARPITEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHD 154 Query: 96 PSAHLASPKLPQRLPKDLSEAQVERLLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVG 154 P+A L PK+ + LPK LS A+VE+LL P L LR+ AML +LYATG+RVSELV Sbjct: 155 PAALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVK 214 Query: 155 LTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR 214 L ++ ++ + G +R++GKG+KERLVP GE A + Y+ RP LL D LF + R Sbjct: 215 LPVAAVN-QAGHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGR 273 Query: 215 AQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLS 274 MTR FW ++ A GI E +SPHVLRH+FATHLL HGADLR VQ++LGH+D++ Sbjct: 274 GTAMTRLRFWQIVRKSARERGIARE-ISPHVLRHSFATHLLEHGADLRAVQVMLGHADIA 332 Query: 275 TTQIYTHVATERLRQLHQQHHPRA 298 TTQIYTHV T RL+ +H++ HPR Sbjct: 333 TTQIYTHVDTNRLKAIHRKFHPRG 356 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 121/301 (40%), Positives = 180/301 (59%), Gaps = 11/301 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL------HHRGLTLATAQSDDLQALLAE 61 I+ FL L +EKN + T +Y++DL +++ + + + LA Sbjct: 5 IDNFLVYLRVEKNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAH 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G + AR L+A R ++YLYREK + +P +ASPKL +RLP+ L E + + L Sbjct: 65 MQKQGLARATMARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKEL 124 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 ++AP QPL +RD+A+LE LYA GLR+SELV L + D+ + G +RV GK +ERLVPL Sbjct: 125 VEAPDTKQPLGMRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPL 184 Query: 182 GEEAVYWLETYLEHGRPWL----LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 G AV L+ YL RP L + + LF + R ++++ + + Y ++ Sbjct: 185 GSMAVEALQAYLAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLE 244 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + +SPH LRH+FATHLLN GADLR VQ L+GH LS+TQ+YTHV ERL++++++ HPR Sbjct: 245 RK-ISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHPR 303 Query: 298 A 298 A Sbjct: 304 A 304 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 169/299 (56%), Gaps = 14/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE +LD L K +ENT+ AYR DL +V+ L T+ ++ A+ L G+ Sbjct: 35 IEDYLDFLTFTKGRSENTVKAYRNDLHSLVDGL----TTVDQLTLHHIRRWQADALRAGH 90 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ---- 123 +S +R SAVR ++L + DP++ L+SP+ + LP+ L+ Q +L Sbjct: 91 ARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLEV 150 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + P+ LRD AM+E +Y TG+RVSEL L + D+ + V ++GKGNK+R+VP GE Sbjct: 151 GAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDLDFARQTVTILGKGNKQRVVPFGE 210 Query: 184 EAVYWLETYLEHGRPWLLN----GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 A + L+ +++ GRP + + + +F +R ++ + + + + Sbjct: 211 SAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQAT--STVSGG 268 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH+ AT +L GADLRVVQ +LGH+ L+TTQIYTHV +ERL+ + Q HPRA Sbjct: 269 DVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 177/304 (58%), Gaps = 15/304 (4%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR------GLTLATAQSDD 54 M+ D A + F L + N +++TL AY +DL + +T+ Sbjct: 1 MQADHA-LSLFDGHLKTQ-NRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYI 58 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 +++ L E + G + S AR LSA+R F++L RE + +P +A+PKL ++LP LS Sbjct: 59 VRSFLGEMTDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLS 118 Query: 115 EAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 +++RL++ P L RD+ +LE+LY +GLRVSEL L DI ++RV GKGN Sbjct: 119 LEELDRLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGN 178 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 KER+VPL A+ YLE + L + + +++ ++ + A+ A Sbjct: 179 KERIVPLTNYALEAARQYLEMRE------DKQEALLLNYQGTRLSVRSIRRILDGLALEA 232 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 G+ S+ L PH+LRH+FATHLL+ GADLR VQ LLGH+ LS+TQIYTH+ ERLR++++Q+ Sbjct: 233 GL-SQHLHPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQN 291 Query: 295 HPRA 298 HPRA Sbjct: 292 HPRA 295 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 109/296 (36%), Positives = 167/296 (56%), Gaps = 4/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERL 63 I +FL + +E+ ++ TL AY++DL+ ++ G L D++ LA Sbjct: 31 QEAIARFLQYISVERRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLN 90 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 E Y TS R LS++R F Y + + E +P + + LP+ E ++ +L Sbjct: 91 EQAYAKTSIRRKLSSLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFD 150 Query: 124 AP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + + RD+ +LEVLYATG+RVSEL L++ ++L ++RV+GKGNKER+VPLG Sbjct: 151 SLYKREDDAAWRDRMLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLG 210 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + A + YL H RP + + L + + M+ + R+K ++ + + Sbjct: 211 DSATQAIRDYLSHLRPKIDRN-NSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLK-IY 268 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+FATHLLN GADLR VQ LLGH++LS+TQIYTHV ++LR + + HPRA Sbjct: 269 PHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRA 324 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 112/291 (38%), Positives = 162/291 (55%), Gaps = 5/291 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 E FL+ L +E+N +E+TL +Y+ DL ++L L L T + D + L+ K Sbjct: 6 EAFLNTLKVERNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLK 65 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 TS +R +S +R ++Y +P L PK + LP+ E ++E L + D Sbjct: 66 RTSVSRKISTLRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEED 125 Query: 129 QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYW 188 LRD+ +LE+LYATG+RVSELV + DI V V+GKG+KER VP G Sbjct: 126 TSKNLRDRVILELLYATGIRVSELVNIKKQDIDFYANGVTVLGKGSKERFVPFGAYCRQS 185 Query: 189 LETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL-AGIDSEKLSPHVLR 247 +E YLEH +P + + D L + + + +T + + + AG+ + PH LR Sbjct: 186 IENYLEHFKP--IQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSE--IHPHKLR 241 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H FATHLLN GADLR VQ LLGH +LSTT YTHV+ ++LR+++ HPRA Sbjct: 242 HTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRA 292 >UniRef50_UPI000178962A integrase family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178962A Length = 294 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 114/293 (38%), Positives = 170/293 (58%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG 65 +++++ L EK L+ +T+ +YR DL + + R +T L + + Sbjct: 4 YLDEYVQYLEDEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQ 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A+S R +++R FQYL R+ DP+ L +PK ++ PK L+ QV++LL AP Sbjct: 64 GKAASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 P RDKAMLE+LYA+G++VSELV L++ DI L +R G KER++P+ A Sbjct: 124 DSGTPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIA 183 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + Y+ R L+ D LF + ++TRQ FW IK Y LAGID E ++PH Sbjct: 184 AESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGID-EDITPHT 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA HLL +GADLR VQ +LGHS LSTT +Y A + +++++ +HPR+ Sbjct: 243 LRHSFAMHLLGNGADLRSVQEMLGHSALSTTGMY-QSAKKSMKEVYDHYHPRS 294 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 121/303 (39%), Positives = 187/303 (61%), Gaps = 9/303 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 +++ + FLD L +EK L+ +++AY +D+ E+L R +L A+ D++ L Sbjct: 5 EKNDRLLRDFLDYLRVEKGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDS 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + AR LS+ R+ ++YL ++ E DP+ ++ SP+ + LPK LS +V + Sbjct: 65 LFSNQLDGRTVARKLSSSRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQT 124 Query: 122 LQAPLI------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 LQ P Q L LRD+AMLEV YA LRVSE++G+ M D L G + V GKG+K Sbjct: 125 LQGPPRVLDTKESQALALRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDK 184 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 ER+VPLG+ A+ +++YLE GR L G + +LF + ++++RQ W + + +G Sbjct: 185 ERIVPLGQSALVAVKSYLESGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQASG 244 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 SPH+LRH+ ATH++ +GADLR VQ +LGH+D+STTQIYTH+A +RL+Q+H+ H Sbjct: 245 ---RHASPHMLRHSCATHMVENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFH 301 Query: 296 PRA 298 PR+ Sbjct: 302 PRS 304 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 121/295 (41%), Positives = 182/295 (61%), Gaps = 8/295 (2%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEGGY 67 FL+ L EKNL+ T++ Y +DL+ + + + ++ LA + Y Sbjct: 7 DFLEFLKGEKNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLKDKNY 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + +++AR LSA+R LF++L RE+ + SA LA+PK ++LP+ LS +VE L+ AP Sbjct: 67 EKSTTARKLSAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLINAP-G 125 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D P LRDKA+LEV Y +G+R+ EL GL + ++ L+ G ++V GKGN ERL PLG A+ Sbjct: 126 DDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSFALA 185 Query: 188 WLETYLEHGRPWLLNG----VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +E YL + RP LL + D LF ++ ++++++ R+K Y ++SP Sbjct: 186 AIEDYLYNARPELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTA-SEHRVSP 244 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FATHLL GADLR VQ LLGH ++STTQIYTHV R+ +++ ++HPRA Sbjct: 245 HSLRHSFATHLLEGGADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 104/297 (35%), Positives = 166/297 (55%), Gaps = 8/297 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWL----HHRGLTLATAQSDDLQALLAERLE 64 + FLD L +E+ + T AY D++ + +L + + L+ S D++ L+E E Sbjct: 11 QLFLDYLRIERQYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSELYE 70 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + + AR +S++R +++L + ++P + K Q LP+ + ++ ++ Sbjct: 71 KGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKMFDV 130 Query: 125 PLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 + D L LR+ +LE+LY TG RVSE+ +T+ ++ VV + GKGNK R+VP G Sbjct: 131 VMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVPFGR 190 Query: 184 EAVYWLETYLEHGRPWLLNG--VSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A L YL+ GRP L + + + LF +QR +T + +K +G+ E + Sbjct: 191 YAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQE-V 249 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + H+ RH FAT LLN+ ADLR VQ LLGHS LSTTQIYTHV T+ L++ ++ PRA Sbjct: 250 TAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFFPRA 306 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 172/293 (58%), Gaps = 7/293 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 ++Q+LD L K + +T+NAY RD+ ++E L +G A AQ+D ++ + + Sbjct: 12 VQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTARKTH 71 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA-P 125 S R+LS+ R F YL ++ + +P + +PK P++LP L Q+ ++L A Sbjct: 72 LAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVLNATI 131 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D P+ +RDKAMLE+ Y+ GLR++EL L + DI L + V GKGNK R +P+G +A Sbjct: 132 TSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPIGRQA 191 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+++L+ L + LF + R Q+M + R+ A +A + + PH+ Sbjct: 192 ITALKSWLQQRGQ--LKCHDANALFINHRGQRMGVRGIQMRM---ANMAATHGQHIHPHM 246 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+HLL DLR VQ LLGHS++STTQ+YTH+ + L +++ + HPRA Sbjct: 247 LRHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRA 299 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 120/318 (37%), Positives = 175/318 (55%), Gaps = 21/318 (6%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALL 59 M + QFL + +E+ L++ T+ AY DL V WLH +G+ L + ++ + Sbjct: 1 MDGCERLVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYV 60 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A + G A S AR L+++ ++ E DD +A + +PK LP LS +V Sbjct: 61 ASLDDSGESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVM 120 Query: 120 RLLQAPL---------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQ 164 RL+ + D P+ LRDKA+LE +YATG RVSE G+ + DI L Sbjct: 121 RLMDSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDD 180 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL----LNGVSIDVLFPSQRAQQMTR 220 V R++GKG+K+RLVP+G A L YL GRP L +F ++R ++++R Sbjct: 181 KVARLMGKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSR 240 Query: 221 QTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYT 280 Q+ W I+ A I ++ L PH LRH+FATHL+ GAD+R VQ LLGH+ ++TTQIYT Sbjct: 241 QSVWEIIRTAGERAHI-TKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYT 299 Query: 281 HVATERLRQLHQQHHPRA 298 HV+ E L + + HPRA Sbjct: 300 HVSPENLIEAYLTAHPRA 317 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 120/294 (40%), Positives = 179/294 (60%), Gaps = 3/294 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLE 64 + IE FL + +EK ++ NT AY DL+ L G+ + + E + Sbjct: 4 SHIESFLQYMTVEKRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQ 63 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++S R +S++R +L DPS +L SPK ++LP S+ +VERLL + Sbjct: 64 AGRASSSLRRAVSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDS 123 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 PL LRD+AMLE+LY TG+RVSEL+GL + D+ G ++ GKG + R++P+ Sbjct: 124 VPTSDPLSLRDRAMLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSV 183 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A ++E Y++ R L G + LF + R +++RQ FW IK A LAGI+ ++++PH Sbjct: 184 AQSFVERYIQQARNGL-GGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIE-KEITPH 241 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VLRH+FATHLL +GADLR +Q +LGH+DL+TTQ+YTHV RL ++++HHPRA Sbjct: 242 VLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 356 bits (914), Expect = 6e-97, Method: Composition-based stats. Identities = 115/300 (38%), Positives = 166/300 (55%), Gaps = 11/300 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEG-- 65 + FL+ L +E+ + +T+ AY+RDL V +L G LA DL+ + +G Sbjct: 18 QDFLNYLSVERGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFA 77 Query: 66 ---GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 +TS R L+A R +YL+ + ++ + KLP+RLP+ LS ++E LL Sbjct: 78 SFPPLGSTSVRRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALL 137 Query: 123 QAPL-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG--VVRVIGKGNKERLV 179 A LRD+A+LE LYA+G R+SE + L + DI +VR+ GKG KER+ Sbjct: 138 AAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERIS 197 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSID-VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 LG +A L+ YL RP L +F + + M+RQT W I+ A A ID Sbjct: 198 MLGHQACQALQAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQID- 256 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + PH LRH FATHLL GAD+RVVQ LLGH+ ++TT+IYT V+ + L +++ HPRA Sbjct: 257 RPVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRA 316 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 168/303 (55%), Gaps = 8/303 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLA 60 KQ ++ E+F++ + ++ + T ++Y RDL +L + + + + + Sbjct: 13 KQLMSVAEEFVEFIVARRSGSPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVT 72 Query: 61 ERLEGGY-----KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 G +S +R+LS +R + YL R K + +P+ L +PKL + +P+ L+ Sbjct: 73 LLRSGKITRCKISDSSFSRMLSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTF 132 Query: 116 AQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 Q+ L + ++ P LR++A+LE +YA GLRVSE+ LT++++ L + ++ V GKG+K Sbjct: 133 DQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDK 192 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R+VP + L YL R L +F SQR +T + + AG Sbjct: 193 QRIVPFYKRLRTLLTRYLRDSRALYLK-EEHGFVFVSQRGAPITPRAVQLILAQAGQDAG 251 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 ++ + L PH+LRH+FATHLL++G DLR VQ LLGHS LSTTQIYTHV +RL+Q H Sbjct: 252 LN-QPLHPHILRHSFATHLLDNGVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAAH 310 Query: 296 PRA 298 P + Sbjct: 311 PHS 313 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 354 bits (911), Expect = 1e-96, Method: Composition-based stats. Identities = 111/323 (34%), Positives = 172/323 (53%), Gaps = 33/323 (10%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAERLEG 65 I+QFL+ + +E+ L+ T+ +Y DL+ WL + D++ + Sbjct: 13 IQQFLNHISVERGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSSQ 72 Query: 66 -----GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + AR ++++ +++ DPSA + +PK + LP LS ++VER Sbjct: 73 AMSSQNLGPRTIARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVER 132 Query: 121 LLQAPLI---DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 ++ A + LRD+A++E LYATG RVSE VGL DI L + VVR+ GKG K+R Sbjct: 133 VIDAAGGFGSTDAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQR 192 Query: 178 LVPLGEEAVYWLETYLEHGRPWLL----------------------NGVSIDVLFPSQRA 215 LVP+G+ AV L YL + RP L + V+F ++R Sbjct: 193 LVPIGKCAVRALRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRG 252 Query: 216 QQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLST 275 + ++RQ+ W I +A I ++L PH LRH+FATHL++ GAD+R VQ LLGH+ ++T Sbjct: 253 KSLSRQSAWEAISRAGKMAKI-GKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTT 311 Query: 276 TQIYTHVATERLRQLHQQHHPRA 298 TQIYTH++ + L + + HPRA Sbjct: 312 TQIYTHISPDALMEAYVMSHPRA 334 >UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD80_THET1 Length = 310 Score = 354 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 113/285 (39%), Positives = 171/285 (60%), Gaps = 9/285 (3%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQAL 58 M L+ +E+F+ L E++ + NT AY+ D+ +WL + + A S D+Q Sbjct: 1 MFDGLSSVEEFISHLESERHFSNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDY 60 Query: 59 LAERL---EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 L + Y ++ AR ++A++ FQ+L + + +P++ L SP++ + PK +S Sbjct: 61 LLYLKGNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISV 120 Query: 116 AQVERLLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 +V LL A + P +RD+AMLEVLY TGLRVSELV L + DI+L + ++ IG+G Sbjct: 121 QEVNMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRG- 179 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA 234 K R VPL + AV L+ YLE RP L+ G LF + R Q++TRQ FW +K YA A Sbjct: 180 KTRKVPLSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEA 239 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 GI + ++PH LRH+FA H+++ G DLR VQ LGH+ ++TTQ+Y Sbjct: 240 GI--KGITPHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 175/287 (60%), Gaps = 2/287 (0%) Query: 11 FLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKAT 70 +L+ +EK L+ NTL +Y+RD+ + +++L ++ A D++ L+ER E G K+ Sbjct: 2 YLNYEAVEKGLSSNTLESYKRDIVIYLDFLSRNKKSILKATRKDIEKFLSERKEQGSKSR 61 Query: 71 SSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQP 130 + AR ++ L+++L E + +P+ +L +L + LP+ L++ +V+ LL Sbjct: 62 TVARNKVSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTD 121 Query: 131 LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 LRDKA+ E++Y++GLRVSE+ L + DI +++ GKG +ER+VP+ + A+ L+ Sbjct: 122 KGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLKICGKGKRERIVPINDRALDILQ 181 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 Y++ R ++ G LF + R +++R W +K + I+ + + PH LRH+F Sbjct: 182 RYIQTSRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIE-KNIYPHTLRHSF 240 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 ATHL+ HGADLR VQ +LGHSD++TT+IYTHV + L++ + HP+ Sbjct: 241 ATHLIQHGADLRAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPK 286 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 113/307 (36%), Positives = 170/307 (55%), Gaps = 17/307 (5%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR----GLTLATAQSDDLQALLAERL 63 I +FL L E++L+ NTL AYRRDL WL G +++ +A Sbjct: 19 IGEFLTHLEKERDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLT 78 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S AR LSAVR +++++R++ + +P+ + SPKLP+ LP L Q E L+Q Sbjct: 79 RRGLAKRSIARQLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQ 138 Query: 124 APLID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + ++R+ AMLE+ Y++GLR+SEL G+ ++D+ L V+V GKG KER+V Sbjct: 139 HAATRAQSLEFTDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIV 198 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSI--------DVLFPSQRAQQMTRQTFWHRIKHYA 231 PLG+ A L YL + +F S+R +++ + H + Sbjct: 199 PLGDHAQRALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLM 258 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 + L+ H LRH FATHL++ GADLR VQ LLGH+ +STTQIYTH + +RL++++ Sbjct: 259 SAVS-EGADLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVY 317 Query: 292 QQHHPRA 298 +Q HPRA Sbjct: 318 RQAHPRA 324 >UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax=Bifidobacteriaceae RepID=D2RA91_GARVA Length = 322 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 164/307 (53%), Gaps = 16/307 (5%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 ++ I+ ++D + K L E T AY D+ + W + G ++ +DDL++ +A+ Sbjct: 19 MSLIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMAD-E 77 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + +S AR + AVR F + ++ +P+ L + K+ LP L E Q E L+ Sbjct: 78 SRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMN 137 Query: 124 APLIDQ-----------PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 + LR+ A+LE+LYATG+RV EL L + DI+ ++V GK Sbjct: 138 NVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGK 197 Query: 173 GNKERLVPLGEEAVYWLETYL-EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231 GNK+R+VP G A L ++ + GR LL + +F R +++ ++ + A Sbjct: 198 GNKQRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEA 257 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 A + +SPH LRH+ ATH+LN GADLR VQ LLGHS L+TTQ YTHV+ E L++ + Sbjct: 258 KSAHVP--DISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKY 315 Query: 292 QQHHPRA 298 Q PRA Sbjct: 316 SQAFPRA 322 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 164/302 (54%), Gaps = 5/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQAL 58 M Q + ++++ + L E+ + TL AYR D+ V + G + D++ Sbjct: 1 MNQITSTMKKYEEYLQAERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIY 60 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E TS AR +S++R + +L + +P A++ ++LP+ L A+V Sbjct: 61 LNNLYERKLAKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEV 120 Query: 119 -ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 E L A LR+ A++E+LYATG+R+ E+ LT S I +V + GKG K+R Sbjct: 121 IEYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQR 180 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 ++P G+ A+ L+ YL + +F + R +Q+T + +K + + + Sbjct: 181 IIPFGKPALASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKL 240 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH+LRH+FATHLLN+GAD+R VQ LLGH+ LSTTQIYTH+ TE L++ +++ Sbjct: 241 TA-NIHPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFD 299 Query: 297 RA 298 RA Sbjct: 300 RA 301 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 114/298 (38%), Positives = 161/298 (54%), Gaps = 10/298 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 Q L IE F D L L ++ T+ YR DL + L +L+A L Sbjct: 22 SQMLEAIEDFCDYLILVVGRSDATVRGYRSDL----RHMAATIPDLTEFTLPNLRAWLGR 77 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 +E G + AR ++V+ + + D +A L SPK+ + LP+ L E Q Sbjct: 78 AVEEGKSRATLARRTASVKSFSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEF 137 Query: 122 LQAPLIDQPLELR-DKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 + + D E R D A+LE+LYATG+RVSEL GL + D+ + +VRV+GKG+KER++P Sbjct: 138 MGSAAADTEDEFRRDSAILELLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIP 197 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G+ A LE +LE D +F R ++ + + A +AG ++ Sbjct: 198 FGKAAADALEQWLEARDRM---AKVEDAMFVGVRGGRIDARQIRRIVDRTAQVAG--ADH 252 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRH ATHLL+ GADLR VQ +LGHS L TTQIYTHV+++RL + +Q HPRA Sbjct: 253 LSPHSLRHTAATHLLDGGADLRQVQEMLGHSSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 124/299 (41%), Positives = 168/299 (56%), Gaps = 6/299 (2%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 Q F++ L E +LA+N++ AY+RD++ WL R + DL LA Sbjct: 19 QGDRWARSFIEYLRTECHLAKNSVAAYQRDMTRFCRWLGDRFIP--KLTVRDLTDYLAFM 76 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E S AR + ++ +YL E +D+P+ L + K +P LS RLL Sbjct: 77 REENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKTAATIPDVLSPTVAARLL 136 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 AP PL RD+A+LE+LYATG R SE+ + + D+ + GKG+KERLVPLG Sbjct: 137 DAPQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDRFCLARGKGSKERLVPLG 196 Query: 183 EEAVYWLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 + A+ +E YLEH RP L L S R Q++TRQ W +K YA+ G + Sbjct: 197 DPALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPA- 255 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH LRH+FATHLL+ GADLR VQ LLGH+ + TTQIYTHV RL+++H Q HPRA Sbjct: 256 SMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 353 bits (907), Expect = 5e-96, Method: Composition-based stats. Identities = 114/326 (34%), Positives = 186/326 (57%), Gaps = 34/326 (10%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-------RGLTLATAQSDDLQAL 58 +++ FL L E+N++ T+ AYR+DLS +E+L + ++LA ++ ++ Sbjct: 12 SQLTAFLKYLANERNMSAYTVTAYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLF 71 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L E L+ GY++ S R L++V+ F++L P+A++ +PK + LP L+E Q Sbjct: 72 LGELLDAGYQSKSIGRKLASVKSFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQT 131 Query: 119 ERLLQAPLID----------------------QPLELRDKAMLEVLYATGLRVSELVGLT 156 + L L RD+A+LE+ Y+ GLR++EL+GL Sbjct: 132 QTLFDEILDHFNEAFYHDNRAKKHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLN 191 Query: 157 MSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSI----DVLFPS 212 + ++ + G V+V+GKG K+R++PLGE A L+ YLE + + S + +F + Sbjct: 192 IMELDFQNGFVKVLGKGRKQRIIPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVT 251 Query: 213 QRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSD 272 ++ +++ +K Y + +K SPHVLRH FATHLLN+GADLR V +LGHS+ Sbjct: 252 EKGKRVYPVLVQRLVKKYLSPV-TEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSN 310 Query: 273 LSTTQIYTHVATERLRQLHQQHHPRA 298 LSTT+IYTH++ ERL+Q++QQ HP+A Sbjct: 311 LSTTEIYTHISFERLKQVYQQAHPKA 336 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 353 bits (906), Expect = 5e-96, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 176/299 (58%), Gaps = 6/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALL 59 M+ D I+++L+ L EK +E+T+N YRR L ++ + H G + + D++ L+ Sbjct: 1 MESD---IQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLI 57 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 A+R G +SSA LSA+RR ++L EK +P+ + PK +RLPK++ + Sbjct: 58 AKRHRQGASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLN 117 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 L D+P+E+RDKAM+E+LY++G+R++EL + + D+S +RV+GKGNK R V Sbjct: 118 HFLDQMPEDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREV 177 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P G + L +L+ R LF SQ+ ++T + R+ H+ G++ + Sbjct: 178 PFGNSSKKVLSLWLKE-RNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLN-D 235 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +L PH LRH+ ATH+L +DLR VQ LLGH+ +STTQIYTH+ + L + + HPRA Sbjct: 236 RLHPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRA 294 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 169/296 (57%), Gaps = 1/296 (0%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 ++ + ++ L LEK+L++NT++AY DL ++ +L + + + ++L+ A Sbjct: 5 EKTDKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAG 64 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + G S AR+LS +R +++L E + + DP+ L SP+ +LP+ ++ +++ L Sbjct: 65 LHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLL 124 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + + R++A+LE LY+ GLRVSEL L +S++ +G ++V GKG+K+RLVP+ Sbjct: 125 IGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPI 184 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 A+ + Y + D +F S + ++R +H IK A G+ +K+ Sbjct: 185 SPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGL-KKKI 243 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 SPH RH+FATHLL GA+LR +Q +LGH + TT+IYTH+ LR +HHPR Sbjct: 244 SPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPR 299 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 115/301 (38%), Positives = 161/301 (53%), Gaps = 9/301 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAER 62 + ++ F L LE+ +++T AY DL + + + R G L + L+A L+ + Sbjct: 2 ESVLDAFDQYLALERGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQ 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G T+ AR SAV+ + R DP+ L PK + LP L + Q L Sbjct: 62 AAAGTARTTLARRTSAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDAL 121 Query: 123 QAPLID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 A PL LRD+ ++E+LYATG+RVSEL GL + D+ + ++RV+GKG+K+R Sbjct: 122 DAANSGAQQGDPLALRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRT 181 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKH-YAVLAGID 237 VP GE A L +L GRP L S L R +++ + + +AG Sbjct: 182 VPFGEPAEQALRAWLTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAP 241 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + PH LRH+ ATHLL GADLR+VQ LLGHS L+TTQ+YTHV RLR +H Q HPR Sbjct: 242 --DIGPHGLRHSAATHLLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPR 299 Query: 298 A 298 A Sbjct: 300 A 300 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 173/297 (58%), Gaps = 4/297 (1%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 + + F+ L +E+ +A+N++ +YRRD+ + + + ++DD+ L Sbjct: 21 PALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFC---PKEIGNYETDDITKYLLS 77 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 E G TS AR A+ + F +L + KL +LP L+ ++ +L Sbjct: 78 LQEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPRIKLGVQLPDVLTVEEMFQL 137 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 L + + PLE+R+K M+E+LYATG+R+SEL+ +++ D++L + V+ V GKG+K+R VP Sbjct: 138 LNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNLTERVILVHGKGSKQRYVPY 197 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 + YL+ RP LL ++LF + R ++M+R FW ++ + A I +++ Sbjct: 198 VDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMGFWKILRKAVLEANI-KKEV 256 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +PH RH+FATHLL G +LR+VQ LLGHS + TTQIYTH+ +RL + ++++HPRA Sbjct: 257 TPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 100/295 (33%), Positives = 163/295 (55%), Gaps = 4/295 (1%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 + + F + + E LAEN++ AY +D+ + + L + +L A + Sbjct: 2 DNAKLVSNFTNWMQYEMGLAENSVKAYHQDIENYIAF---TLKPLVECGAQELVAYMTHL 58 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G + R +S + R + +L EK +P ++ P ++LP L+ +VE+L+ Sbjct: 59 RKSGASIETVQRRISGISRFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLI 118 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 +P + L RD+ + E +Y+TG+R+SELVGL + D+ + + +++V GKG+K+R VP+ Sbjct: 119 NSPDMSSGLGYRDRIIFETMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMY 178 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 ++TYL+ L+ LF S+ +++ R+ W IK Y AGI + +S Sbjct: 179 GSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGI-KKNVS 237 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH LRH+FATHLL +GADLR +Q+LLGH DLSTT+ YT V + R HPR Sbjct: 238 PHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPR 292 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 103/290 (35%), Positives = 159/290 (54%), Gaps = 5/290 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEW-LHHRGLTLATAQSDDLQALLAERLEGGY 67 + + LEK L+ENT+ +Y RDL + L + ++ ++ LA + G Sbjct: 13 RSYRVYIKLEKRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGR 72 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + TS AR LS +R + YL + P+ + +PK + LP L+ +++R++ A Sbjct: 73 EKTSQARALSGIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDT 132 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 RD AMLEVLY+ GLRVSEL L + D+ +G +RV GKG+K+RLVP+ A Sbjct: 133 STVKGRRDSAMLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAARE 192 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 ++ YL+ + DV+F + R Q+TR + ++ AGID + +SPH R Sbjct: 193 KIQRYLDDR---ATKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGID-KHISPHTFR 248 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 H+FATHLL GA +R VQ +LGH + TT+IYTH+ + LR +++ P Sbjct: 249 HSFATHLLEGGASIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLPL 298 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 104/292 (35%), Positives = 172/292 (58%), Gaps = 5/292 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +E+F + L E+ L+ +T Y+R L+ + E L + + ++ + ++ + G Sbjct: 10 LERFYEYLRSERELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKGMRDG 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 KA+S A LSA+R F +L + + +P+ +A+P+ + LPK+L ++ +LL Sbjct: 70 LKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLD-VN 128 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D PL +RD+AM+E++Y GLR++ELVG+ + ISL +G +RVIGKG+KER+VP A Sbjct: 129 DDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSGLAR 188 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 W+ +L+ L LF S+ +++ + R+ + + S ++PH L Sbjct: 189 EWVAKWLKLRDNIALA--EEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSS-HINPHKL 245 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FATH+L DLR VQ LLGH++LSTTQIYTH+ + L +++ + HPRA Sbjct: 246 RHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRA 297 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 183/306 (59%), Gaps = 9/306 (2%) Query: 1 MKQDLARIEQFLDALWLEK---NLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQA 57 M+ +L Q L E+ N +E+T+ AY RD+ +E+ + + L ++ DL+ Sbjct: 1 MESNLDFALQLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLRE 60 Query: 58 LLAERLEGG-YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 LA+R+E ++S R L+++R+ ++ + K+ E +P+ + P+ LP + Sbjct: 61 YLAQRVEQDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIE 120 Query: 117 QVERLLQAPLIDQP----LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 V ++L P+ ++P L LRDKAMLE+LY++GLR++EL GLT+ DI + +VR+ GK Sbjct: 121 TVNQILDQPMPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGK 180 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 GNK R+VP G++A L +L+ W + +F SQR +T + R+K A Sbjct: 181 GNKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQ 240 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG++ + L PH+LRH FA+H+L+ DLR VQ +LGHS+LSTTQIYTH+ + L Q++ Sbjct: 241 RAGVNVD-LHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYD 299 Query: 293 QHHPRA 298 Q HPRA Sbjct: 300 QAHPRA 305 >UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019772C5 Length = 334 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 121/331 (36%), Positives = 172/331 (51%), Gaps = 43/331 (12%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 + FL L + L+ NT+ AY D+ + L RG+ L +DDL+ +A Sbjct: 7 LSAFLAYLRANRGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFET-RD 65 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + +S AR + +VR F + + E DP+A L +PKLP LP L+EAQ ERL+ Sbjct: 66 HARSSMARKVVSVRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVD 125 Query: 127 IDQPL----------------------------------ELRDKAMLEVLYATGLRVSEL 152 D L LRD AMLE+LYATG+RV+EL Sbjct: 126 DDASLHAASSQRYETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAEL 185 Query: 153 VGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGV-----SID 207 VGL + D+ +RV GKG+K+R+VP G+ A L + EHGRP +L Sbjct: 186 VGLDIGDVDWSHRTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTA 245 Query: 208 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 267 LF R +++ ++ + A +G+ +SPH LRH+ ATH+L+ GADLR VQ + Sbjct: 246 ALFLGMRGRRIDQRIVRDVVHRAARESGVP--DISPHSLRHSAATHMLDGGADLREVQEM 303 Query: 268 LGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LGHS L TTQ YTHV+ E+L++ ++Q PRA Sbjct: 304 LGHSSLRTTQRYTHVSIEQLKERYRQAFPRA 334 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 351 bits (901), Expect = 3e-95, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 175/295 (59%), Gaps = 5/295 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDLQALLAER 62 + ++ L +EK L++NT+ +Y RDL ++ + + + L E Sbjct: 4 KDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKEL 63 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + S +R L ++R L+ +L +E +++ + PK ++LP LS+ ++ +L Sbjct: 64 SKTNC-TNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEIL 122 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 ++ + R++ M+E+LYATG+R+SEL+ LT+ D++++ G ++VIGKGNKER++P+G Sbjct: 123 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 182 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 LE Y+ R N + +LF ++ Q+++R+ F+ ++ I ++K+S Sbjct: 183 SYVGEILEQYINDYRAEF-NIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSI-TKKVS 240 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH RH FATHLL +GADLR +Q LLGHSD+STT IYTH++ +++R +QQ HPR Sbjct: 241 PHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQFHPR 295 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 169/310 (54%), Gaps = 22/310 (7%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGY 67 E++L+ + +E+ + +TL++Y DL++ + +L + A + ++A +A G Sbjct: 9 EEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIAHLFHEGM 68 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +++ R +S+++ +++ E+ E+ P+ +L PK LP L++ Q+ LL P Sbjct: 69 SSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHLLDDPFK 128 Query: 128 DQPLEL------------------RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRV 169 Q L RDKA+LE+LY GLRVSEL GL D+ + +VRV Sbjct: 129 PQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLVSDELVRV 188 Query: 170 IGKGNKERLVPLGEEAVYWLETYLEHGRPWLL-NGVSIDVLFPSQRAQQMTRQTFWHRIK 228 GKG+KERLVP A+ + Y R L + + D +F S R +++RQ + ++ Sbjct: 189 FGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQAVFSLVE 248 Query: 229 HYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 Y GI + L PH LRH++ATH+L G +LR+VQ LLGH+ +STTQ+YTH+ +R Sbjct: 249 RYGSYVGI--KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIR 306 Query: 289 QLHQQHHPRA 298 + HPRA Sbjct: 307 SEYMAAHPRA 316 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 122/291 (41%), Positives = 185/291 (63%), Gaps = 1/291 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 IE+ L L +E++ A NT YR+ L ++W+ L++ + +S ++ L E + G Sbjct: 14 IEKALAFLAIERSHAINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHIELFLDEERKRGL 73 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +S + A+R LF+YL + + +P H P + RLP+ L+ ++E+LLQAP Sbjct: 74 SDSSIKITIIALRHLFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPFP 133 Query: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187 D PL RDKA+LE+LY++GLRVSEL+ L + ++V+GKGNKER VP+G+ A Sbjct: 134 DTPLGWRDKAILELLYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGKCAKE 193 Query: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247 L+ Y+ GR LL + +F +QR Q +TR I HYA L GID +K+ PH+LR Sbjct: 194 ALDKYIAEGRTKLLAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGID-KKVYPHLLR 252 Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H FA+HL+ +GADLRV+Q LLGH++++TTQIYTHV + L+++H++ HPR+ Sbjct: 253 HTFASHLVENGADLRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 349 bits (898), Expect = 4e-95, Method: Composition-based stats. Identities = 106/308 (34%), Positives = 162/308 (52%), Gaps = 19/308 (6%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLAT---AQSDDLQALLAERL 63 IE FL + ++K +E T AY DL+ + E+L + + L +QA LA Sbjct: 66 LIEAFLAWMTVQKGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLF 125 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G +S AR L+A R F++ R ++ +A + +P+ +R P+ L+ + LL Sbjct: 126 RKGEAKSSMARKLAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLD 185 Query: 124 APLI-------------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 + ++ + RD A+ E+LY +GLR+SE + L + D+ L V+RV+ Sbjct: 186 SATGPGGKRGPVAGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVM 245 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 230 GKG++ERL PL + + L+ +LE LL LF R ++ R+ ++ Sbjct: 246 GKGSRERLAPLSDTSFSCLKAWLEERP--LLALPDEAALFVGARGARLNRREAARIVERL 303 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 AG+ +SPH LRH+FATHLL GAD+R VQ LLGH L+TTQ YT V+ E L Q Sbjct: 304 CRRAGLTF-TVSPHSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQT 362 Query: 291 HQQHHPRA 298 + Q HPR+ Sbjct: 363 YDQAHPRS 370 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 349 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 146/297 (49%), Positives = 197/297 (66%), Gaps = 7/297 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M++D I++ L+ LWL++ L+ NTL +YRRDL + L G TL A DL A Sbjct: 18 MEED--LIDRLLETLWLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLA---A 72 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G + +S AR LSA +RL+ ++ RE R D+P+ L PK+ + +P ++E Q+ R Sbjct: 73 AVYVAGEERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISR 132 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP D P LRDKA+LE++YATGLRVSE V L+ ++ L +G + +GKGNK+R+VP Sbjct: 133 LLSAPDTDTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRIVP 192 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 +G E+VYW+E Y + RP LL G S D LF SQ+ ++RQ W +K YA AGI E Sbjct: 193 MGRESVYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGI--EH 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +SPH LRHAFATHL+ HG DLRVVQ +LGH+DL+TTQIYTHVA RL + ++HH R Sbjct: 251 ISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSR 307 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 349 bits (897), Expect = 6e-95, Method: Composition-based stats. Identities = 108/288 (37%), Positives = 177/288 (61%), Gaps = 6/288 (2%) Query: 16 WLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG-YKATSSAR 74 + +N +E+T+ AY+RDL+ + + L L ++ DL+ LA R+E ++S R Sbjct: 22 RIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEKDQLSSSSLQR 81 Query: 75 LLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLE-- 132 L+++R+ ++ + ++ + +PS + P+ LP + V ++L D+P+E Sbjct: 82 HLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAPPDKPIEQQ 141 Query: 133 --LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLE 190 LRDKA+LE+LY++GLR++EL GL + DI + ++R+ GKGNK R+VP G++A L Sbjct: 142 LWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFGQKAKDSLI 201 Query: 191 TYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF 250 +L+ R W +F SQR ++T + +R+K A AG++ + L PH+LRH F Sbjct: 202 EWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVD-LHPHLLRHCF 260 Query: 251 ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 A+H+L+ DLR VQ +LGHS+LSTTQIYTHV ++L +++ Q HPRA Sbjct: 261 ASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRA 308 >UniRef50_A1ZPB9 Tyrosine recombinase XerD n=4 Tax=Bacteroidetes RepID=A1ZPB9_9SPHI Length = 299 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 111/297 (37%), Positives = 190/297 (63%), Gaps = 4/297 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL--ATAQSDDLQALLAER 62 + I++F L LE++L+EN+L AY D+ ++L GL++ A ++D ++ L+ Sbjct: 4 QSYIKEFGTYLKLERSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYL 63 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G A+S AR+LS ++ ++YL E+ E DPS ++ +P++ +++P LS ++E LL Sbjct: 64 AKLGIAASSQARILSGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLL 123 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + P R++AM+EVLY++GLRV+EL+ L +S++ L G +R+IGK NKER VP+G Sbjct: 124 AVIDLSTPEGARNRAMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIG 183 Query: 183 EEAVYWLETYLEHGR-PWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 EA +L +Y+E+ R + + D +F ++R +++R + IK A+LA I + + Sbjct: 184 REAARYLISYIENIRSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADI-KKNI 242 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH RH+FATHL+ GA+++ VQ +LGH +++TT+IY + + LRQ + HPR+ Sbjct: 243 SPHTFRHSFATHLILGGANIKAVQEMLGHENITTTEIYKRLDQDILRQTLLEFHPRS 299 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 97/296 (32%), Positives = 168/296 (56%), Gaps = 5/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG--LTLATAQSDDLQALLAER 62 + EQFL L E++ + T+ AY++DL+ ++ G DL+ L Sbjct: 1 MTLEEQFLSYLKNERSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLA- 59 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 +++ +R LS+++ +++L R + DP+ + + ++LP+ + +V +++ Sbjct: 60 TGQKLASSTLSRKLSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVI 119 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 ++ +PL +R++A++ + YATG+R+SEL L + + L G++ V GKGNK+R V Sbjct: 120 RSLNDGKPLTVRNRAIVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFD 179 Query: 183 EEAVYWLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 +E+ +LE YL+ RP LL +F ++ + ++ + ++ AG+ + Sbjct: 180 QESKKYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTA-GA 238 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 PH LRH+FAT +LN+GADLR VQ LLGH DLSTTQIYTHV+ + L ++QH PR Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 117/297 (39%), Positives = 161/297 (54%), Gaps = 7/297 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG 65 +E+F L LE+ +E+T AY DL + +L R G L L++ LA Sbjct: 5 LEEFDRYLELERGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAA 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G ++ AR S+V+ + R DDP++ L PK + LP L + Q L+A Sbjct: 65 GTARSTLARRTSSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAA 124 Query: 126 LID----QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 PL +RD+ ++E+LYATG+RVSEL GL + D+ + ++RV+GKGNK+R VP Sbjct: 125 ESGAQQGDPLAVRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPY 184 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 GE A L +L GRP L S L R +++ + + G + + Sbjct: 185 GEPAHAALTAWLHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVG-GAPDI 243 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRH+ ATHLL GADLRVVQ LLGHS L+TTQ+YTHV RLR +H Q HPRA Sbjct: 244 GPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 153/294 (52%), Positives = 190/294 (64%), Gaps = 1/294 (0%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 + +FLD LWLE NLA N+L AY RDL ++ +L L A + DL LA+RL+ Sbjct: 16 DEDLARFLDHLWLEGNLAANSLEAYSRDLRLLATYLAASQRRLRDADAADLSLFLAQRLQ 75 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 GG S AR LS++RR + + RE +R DDPSA L + + LP SE +V+ LL A Sbjct: 76 GGAALRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDALLAA 135 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 P L LRD AMLE LYATGLRVSELVGL S + L GVV +GKG+KERL+P+GE Sbjct: 136 PDRRTVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIPVGEV 195 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L YL R LL LF + R + M+RQ FW IK +A AGI S SPH Sbjct: 196 ALETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRS-AFSPH 254 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRHAFATHLL+HGADLR VQ++LGH+ L+TT+IYTH+A RL+ LH+QHHPR Sbjct: 255 SLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHHPRG 308 >UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W041_9ACTO Length = 302 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 108/300 (36%), Positives = 160/300 (53%), Gaps = 7/300 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAER 62 +LA ++ F L + + +T AY D+ +E+ T S L++ L+ R Sbjct: 5 NLALLKDFTTWLEHFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNR 64 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + G+ S AR +++R + ++ DPS L + K+ LP+ LS Q+ +L Sbjct: 65 IRKGHARASVARYAASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLF 124 Query: 123 ----QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 + +RD A E+LY+ G+RV+ELVGL ++ + +RVIGKGNKERL Sbjct: 125 NHLVETAQTGNVNAIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERL 184 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VP G A+ L ++ GRP L+N S LF R ++ ++ ++ V AG+ Sbjct: 185 VPFGTPALESLRAWVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPV 244 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRH ATH+L GADLR VQ +LGH+ L+TTQ YTHV RL + +Q HPRA Sbjct: 245 --LSPHGLRHCAATHMLEGGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 106/293 (36%), Positives = 180/293 (61%), Gaps = 6/293 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 ++QFL+ + EK L+E T+ Y+ D++ ++ L S+D++ L++ Sbjct: 4 ELLDQFLNYIKFEKRLSELTIKNYQNDINRLIL---INDKKLTEFNSEDIRLSLSKLHAS 60 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G S +R+LS+ R F + + + + DP++ + +PK ++LP+ LS QV L+ P Sbjct: 61 GLSGKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIP 120 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + ++ RD+A+LE Y++GLR+SELV + +SDI + ++V+GKGNK R+VPLG +A Sbjct: 121 QTN-FIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKA 179 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+ ++ R L V + LF +Q+ +++T + +R+K +A I E + PH+ Sbjct: 180 IEALDLWI-LQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIP-ENIHPHL 237 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+H+L DLR VQ LLGHS++STTQIYTH+ + L +++ Q HPR+ Sbjct: 238 LRHSFASHVLQSSQDLRAVQELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRS 290 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 8/295 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 I F D L E+ + +T+N Y L + + Q + ++ Sbjct: 20 ITLFSDYLKFERQYSAHTVNQYVSQLGFAALYFSKLCDDWFSVQGEHIRRYSMALRSKQL 79 Query: 68 KATSSARLLSAVRRLFQYLYREKFRED----DPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + + LS +R L+++L + + +P+ + PK + LPK+L Q+ RLL+ Sbjct: 80 SGRTISLKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLE 139 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P D+PL +RDKAM+E++Y++GLR+SELVG + DIS G + V GKGNKERL+P+G Sbjct: 140 IPD-DEPLAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGS 198 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 +A+ L+ +L RP N +F S + +++ + R++ + + GI S+ + P Sbjct: 199 KALNALKKWL-IIRPQFAN-PDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQ-VHP 255 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H LRH+FA+H+L DLR VQ LLGHS LS TQ+YTH+ + L +++ HPRA Sbjct: 256 HKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRA 310 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 97/290 (33%), Positives = 161/290 (55%), Gaps = 4/290 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 + F+ + + +E+T AY RD+ ++++ + + L + Sbjct: 4 EELVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAV--HEVDRLMAYDYLNMLYD 61 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 ++S AR +S +R +++L D+P + + + LP L ++E LL + Sbjct: 62 SNLSSSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLS 121 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + L +R++ M+E++YA GLRVSE+V L + D+ L + +RVIGKGNKER + E Sbjct: 122 CD-ESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYES 180 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 V L +YL RP N + +F +QR + +T + H ++H AG+ + L PH Sbjct: 181 LVPKLWSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMK-LHPH 239 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 +LRH+FATHLL++GA LRVVQ LLGH LSTTQIYTHV+ +++++++ Sbjct: 240 MLRHSFATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 173/306 (56%), Gaps = 9/306 (2%) Query: 1 MKQDLAR-IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQA 57 + ++ A I++F+ + +E+ L++ T++AY DL WL + + T D+++ Sbjct: 14 IPEEFALHIQRFIAHIDIERGLSKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIES 73 Query: 58 LLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQ 117 + E G + AR L+++ +++ + D SA + +PK LP LS + Sbjct: 74 YIRTLNELGLGTRTVARRLASIHEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEE 133 Query: 118 VERLLQAPL---IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGN 174 V R+++A + +RD A+LE LYATG R+SE VG+ DI L + VV++ GKG+ Sbjct: 134 VNRVIEAAGNFGSSDAISIRDTALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGS 193 Query: 175 KERLVPLGEEAVYWLETYLEHGRPWLL--NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 K+RLVP+G AV L Y+E RP L + +F ++R ++RQ+ W + Sbjct: 194 KQRLVPIGGCAVRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGE 253 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 A +D + L PH LRH+ ATHL+ GAD+R VQ LLGH+ ++TTQIYTH++ + L + + Sbjct: 254 RAKLD-KPLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHISPDALVEAYV 312 Query: 293 QHHPRA 298 HPRA Sbjct: 313 MSHPRA 318 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 110/298 (36%), Positives = 159/298 (53%), Gaps = 10/298 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 + I+ F + L L + T+ YR DL M + + + L+ L Sbjct: 20 SKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIE----DIDNFSLPTLRQWLGI 75 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 ++ G + AR ++V+ + + + D +A L SPK+ + LPK L E Q Sbjct: 76 AVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKITRDLPKILGEQQAGDF 135 Query: 122 LQ-APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 ++ A ++ LRD A+LE+LYATG+RV+EL G+ +SDI + +VRV+GKGNKER+VP Sbjct: 136 VENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRKMVRVLGKGNKERVVP 195 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 GE A L +L+ LF R Q++ + + A + G+D Sbjct: 196 FGESAHKALRNWLDVRDEM---TEDPKALFVGVRGQRINARQVRRIVDRAAKVTGVD--H 250 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRH ATHLL+ GADLR VQ LLGHS + TTQIYTHV+ +RL + + HPRA Sbjct: 251 LSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 168/319 (52%), Gaps = 28/319 (8%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------LTLATAQSDDLQALL 59 +E FL L +N++ T+ AYR DL +L + + + D++ + Sbjct: 19 WLEPFLSHLQAARNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFM 78 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 L+ G + S AR L++V+ +++L P + + +P+L +++P+ +SE + Sbjct: 79 GHLLDKGIQPRSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEAR 138 Query: 120 RLL----------------QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLR 163 +L + + Q RD+A+LEVLY GLR+SEL+ L +D+ L Sbjct: 139 QLFRRFESQEDNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLV 198 Query: 164 QGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPW----LLNGVSIDVLFPSQRAQQMT 219 G ++V GKG K+R+VPLGE AV L Y E R + L +F + R +Q+ Sbjct: 199 HGFLKVTGKGRKQRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLY 258 Query: 220 RQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279 K Y +SEK +PH+LRH+FATH+LN GADL+ V +LGHS L+TT++Y Sbjct: 259 PMLVQRMTKRYLTPVS-ESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELY 317 Query: 280 THVATERLRQLHQQHHPRA 298 THV RL++++ + HP A Sbjct: 318 THVTFSRLKEIYDKAHPGA 336 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 114/293 (38%), Positives = 181/293 (61%), Gaps = 5/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 IEQ+ + KNL+ NT++AYRRD+ E+L +G L + + + + G Sbjct: 4 LIEQYFAEIRK-KNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKNG 62 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R + ++R F+YL + +D+P PK+ + P L+ +VE+LL P Sbjct: 63 RANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPD 122 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + +RDKAMLE++YATG++V+EL+ LT+ DI+L+ ++ G NKER++P+G AV Sbjct: 123 GNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYAV 182 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 LE YL+ LN +ID LF + + +MTRQ FW IK YA +GI +K++ + L Sbjct: 183 KCLEIYLKVRTK--LNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGI-KKKINAYTL 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE-RLRQLHQQHHPRA 298 RH+FA HLL +GAD++ +Q LLGHSD++TTQIY+ + + R+ +++++ HPRA Sbjct: 240 RHSFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAEVYKKTHPRA 292 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 111/292 (38%), Positives = 168/292 (57%), Gaps = 2/292 (0%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALLAERLEGG 66 + QF L LE+ L++NT++AY DL+ + + + DDL + Sbjct: 2 LAQFKLYLSLERGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRE 61 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ +R L ++ F++LY+EK D HL S +L + LP LS ++ERLL Sbjct: 62 LNDSTISRRLVTLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYD 121 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 PL+ R+K ++E+LY+ GLR+SEL GL + G +RV GKG+KER VP G + Sbjct: 122 EAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVA 181 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 Y+++ RP L + L S + +TR W +K A+ A I+ + L PHVL Sbjct: 182 SMSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEIN-KNLHPHVL 240 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+FA+HLL++ ADLR++Q LLGH+D++TT+IYTHV RL+ +HQ+ PRA Sbjct: 241 RHSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 346 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 116/302 (38%), Positives = 158/302 (52%), Gaps = 5/302 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M +E+F + L L+ + +T AY DL ++ + RG L L++ L+ Sbjct: 1 MPDSEPILEEFDEYLALQCGRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLS 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV-- 118 GG T+ AR SAV+ + R DP+A L PK + LP L + Q Sbjct: 61 AAAAGGVARTTLARRTSAVKAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALG 120 Query: 119 --ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 P+ LRD+ ++E+LYATG+RVSEL GL + D+ + +VRV+GKGNK+ Sbjct: 121 AMAAAKNGAAQGDPIALRDRLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQ 180 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R VP G A L +L GRP L N S L R +++ + + Sbjct: 181 RSVPFGAPAGEALHAWLADGRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVS- 239 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 + + PH LRH+ ATHLL GADLRVVQ LLGHS L+TTQ+YTHVA RLR +H Q HP Sbjct: 240 GAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHP 299 Query: 297 RA 298 RA Sbjct: 300 RA 301 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 346 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 131/297 (44%), Positives = 172/297 (57%), Gaps = 5/297 (1%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 ++ I L L + + + T ++YR DL + +L A + LA+ Sbjct: 6 TENEEMITGLLQRLAMLRGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLAK 65 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 G K T+ R SA+ F +L + RED P+ HL + + LPK +SE VERL Sbjct: 66 LGRDGMKPTTIQRRRSALSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERL 125 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 L AP + P+ LRD+ MLE+LYATG+RVSELV LT + + G++RVIGKG+KERL+P Sbjct: 126 LAAPETEDPVGLRDRCMLELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPF 185 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 GEEA WL+ +L + LF + MTRQ FW RIK YA +AGI Sbjct: 186 GEEAGQWLQQWLLLR----PAKPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLP- 240 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRHAFATHLLNHGADLR VQMLLGH+ ++TT+IYTHV+ R+ L HP Sbjct: 241 SPHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHVSRARMHDLVNHSHPLG 297 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 115/306 (37%), Positives = 173/306 (56%), Gaps = 13/306 (4%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERL 63 +E FL L E+ +E+T Y L + W + L + L A L Sbjct: 2 QTLVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFER 61 Query: 64 EG-----------GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKD 112 E + S ++A+R +++ EK + + L+ P+ +RLPK Sbjct: 62 ERLVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKA 121 Query: 113 LSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 LS+ ++ +LL + + P L D+A+LE+ YA+GLR++EL + M + L G + VIGK Sbjct: 122 LSDLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGK 181 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 GNKER+VP+G +AV L+ YLE GRP L+ S +F + R T W RIK Sbjct: 182 GNKERVVPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVK 241 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 +G+ + ++PH+LRH+FATHLL HGADLRV+Q LLGH+++STT+IYTHV+ RLR++H+ Sbjct: 242 RSGV-ARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHR 300 Query: 293 QHHPRA 298 + HPR Sbjct: 301 KFHPRG 306 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 111/299 (37%), Positives = 177/299 (59%), Gaps = 7/299 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA-QSDDLQALL 59 M+ + + I +F+ +L KN + +TL AY DL + ++ LT A L+ L Sbjct: 1 MESNASLINKFILSLQS-KNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYL 59 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 EG YK + R +S +R +YL + + +++P L PK + LPK L++ + + Sbjct: 60 GVTSEGDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETD 119 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 RL+ L RDKA+ E++Y++GLR SE+ GL++ DI L GVVRV+GKG+KERLV Sbjct: 120 RLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+ + A+ L+ YL S D LF ++ ++T + +K+ + A + + Sbjct: 180 PITDLAIEALKEYLSTR----GVYNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANL-AR 234 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 K++ H LRH+FATH+LN+G DLR +Q +LGH LS TQ+YTHV+ +RL++++ Q HPR+ Sbjct: 235 KVTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLKKIYGQTHPRS 293 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 164/295 (55%), Gaps = 4/295 (1%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQALLAERL 63 +E+FL + + NT+ YR+D++ ++++ + + +++ +A Sbjct: 12 EPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAYSN 71 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 S R +SA+R F YL + E + ++ PK + LP L++ + +L Sbjct: 72 NNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKLRN 131 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 I + +RD+ ++E LY++GLR SELV L+ I+L + VRV+GKGNKER+ E Sbjct: 132 VIDISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFFSE 191 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A W E Y+ R N ++F + R +++T ++ I YA AGI+ ++++P Sbjct: 192 NARKWYEKYISAKRNEYKNYTPN-IVFVNSRGERITTRSLRRLIADYAEKAGIN-KEVTP 249 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 HV RH+FAT LLN+ D+R +Q LLGHS +STTQ+YTHV+ LR+++ + HP A Sbjct: 250 HVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLA 304 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 104/274 (37%), Positives = 162/274 (59%), Gaps = 3/274 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 +E+F+ L K +++NT+ +YRRDL ++ RG+ L + + G Sbjct: 5 VEKFVGYLRDVKKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLEREG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 A + +R+L++++ F Y E + + +P+ + +PK+ ++ P LS +V RLL P Sbjct: 65 KAAATISRMLASIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPG 124 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 P E+RDKAMLE+LYATG+RVSEL+ L + I++ G + G ER +P G A Sbjct: 125 GRTPKEIRDKAMLELLYATGIRVSELMNLNLHHINMTIGFITCSDSGR-ERTIPFGRVAK 183 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ YL++ RP L D LF + QM+RQ FW IK+Y AGI ++ ++PH L Sbjct: 184 KALDDYLKNSRPELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTD-ITPHTL 242 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYT 280 RH+FA HL++ GAD++ VQ +LGHSD++TTQ+Y Sbjct: 243 RHSFAAHLISSGADMKAVQQILGHSDMATTQMYA 276 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 112/313 (35%), Positives = 160/313 (51%), Gaps = 23/313 (7%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-HHRGLT--LATAQSDDLQALLAE 61 I+ FL L ++ + T YR+ L W RG+ DD + L Sbjct: 29 EKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKERGVEPAWENLHRDDFRGYLRF 88 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 G + A+R +++L R P +++ PK+ +RLPK L+ Q+ L Sbjct: 89 LGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVEL 148 Query: 122 LQAP--------------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 L AP I + RD A+LE +Y+ GLR+SEL GLT DI + +V Sbjct: 149 LGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLV 208 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQ--RAQQMTRQTFWH 225 RV GKG KER VP+GE A+ + Y G +F + +A ++ + Sbjct: 209 RVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGS---PVFLGETEKAAALSPRVLQQ 265 Query: 226 RIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 285 R+K Y LAG+D L+PH LRH++ATH+L+ GADLR VQ LLGH+ L TTQ+YTHV+TE Sbjct: 266 RLKKYLALAGLDP-SLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTE 324 Query: 286 RLRQLHQQHHPRA 298 RL++ + HPRA Sbjct: 325 RLKRAYDSAHPRA 337 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 146/298 (48%), Positives = 193/298 (64%), Gaps = 5/298 (1%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M I++ L++LWL+ L+ NTL +YRRDL + L G +A L Sbjct: 1 MMSMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSD--- 57 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 G K+TS AR LSA +R++ +L R D+P+ L +PK ++LP ++EAQ++ Sbjct: 58 SVYAEGEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDA 117 Query: 121 LLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 LL AP ++ LRDKA+LEV+YATGLRV+E V LT+SDI L +G +R IGKG+K RLVP Sbjct: 118 LLAAPDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVP 177 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 LG+EA YW+E Y RP LL D +F SQ+ ++RQ W +K YA AGI S Sbjct: 178 LGQEAAYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIAS-- 235 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LSPH LRHAFATHL+NHG DLR VQM+LGHSD++TTQIYTHVA RL+ + +HH R+ Sbjct: 236 LSPHGLRHAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSRS 293 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 107/300 (35%), Positives = 166/300 (55%), Gaps = 13/300 (4%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT----LATAQSDDLQALLAERLEG 65 +F+ L E+ L+ T+ AY DL E ++ T L+ +D ++ LA + Sbjct: 24 RFIAHLRHERGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKT 83 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 K TS AR LS +R + +L + ++P+A +A PKL ++P L V LL + Sbjct: 84 R-KKTSRARKLSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSL 142 Query: 126 LID------QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 R+ A+ E +Y+TG+RVSEL G+ SD+ +G+VRV+GKG+KER+V Sbjct: 143 NAGAARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIV 202 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVS-IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 P+G +A+ ++ YL LF + R +++T ++ ++ G+ Sbjct: 203 PVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLW- 261 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + LSPH LRH FATHLLN GADLR +Q +LGHS+LSTTQ YTHV ++L +++ HPR+ Sbjct: 262 QHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRS 321 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 7/298 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M + R++ FL L +E+NL+ T+ +Y+ DL + WL G+ L Q + L L Sbjct: 1 MSLNSNRLDAFLSHLGVERNLSPVTIQSYQEDLRHFIAWLDENGIDLKDLQPEKLDEFLT 60 Query: 61 -ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 + Y TS AR S++R +Y+ + + + LA+PKL LP+ L+ +++ Sbjct: 61 LTAGQEEYSPTSVARHFSSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEID 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + ++ + LRD A++E++Y+ GLR+SE +G+ +S I L + IGKGNK+RLV Sbjct: 121 SVFESA-ANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLV 179 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PLG +A L ++E GRP L + D + + + M+R W ++ + + S+ Sbjct: 180 PLGSKAKENLRAWIEEGRP--LTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMHL---SK 234 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 ++SPH RH+FATH L G DLRV+Q LLGH+D+STTQIYTHV + ++Q H+ HPR Sbjct: 235 QVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTTQIYTHVDKDFIKQEHRSFHPR 292 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 112/299 (37%), Positives = 163/299 (54%), Gaps = 11/299 (3%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATA----QSDDLQALLAERL 63 E++ + L L + ++ +T++AY DL ++E+L T +++ LA L Sbjct: 7 ERWEEYLRLGRRMSPHTVSAYLGDLHSLMEFLSLDADATPEQLREALTQRAVRSWLARTL 66 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G ++ AR +A+R + RE DP+A L+SP+ Q LP L E+ LL Sbjct: 67 ADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVLLN 126 Query: 124 APLIDQPLE----LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 + +R+ A+LE+ YA GLRVSE+ L +S ++ VRV+GKGNKER+V Sbjct: 127 TARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNKERVV 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P G A L+ +L GRP L S + LF + ++ + + A AG+ Sbjct: 187 PYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGV--H 244 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ++PH LRH+ ATHLL GADLR VQ +LGHS LSTTQ YTHV T RL ++Q+ HPRA Sbjct: 245 DIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 104/294 (35%), Positives = 164/294 (55%), Gaps = 7/294 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + QFL +L EKN + +T+ AY DL +L ++ L+ + G Sbjct: 10 VAQFLRSLK-EKNSSVHTIKAYTTDLEEFSAFLG--PAKWDDIDHVRIRGFLSHLYDKGL 66 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 S AR L+A+R L+++L RE F E +P+A +A+PKLP++LP+ + ++ ++ A + Sbjct: 67 SKPSVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMP 126 Query: 128 DQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 + RD + E+LY G+R SEL G+ + DI + + GKG KER VP G+ A Sbjct: 127 EAASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIRGKGKKERFVPFGDAAA 186 Query: 187 YWLETYLEHGRPWLL-NGVSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + YL+ + L S + L + R Q++T ++ +K AV G+ ++ + PH Sbjct: 187 VAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPAD-VHPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRHAF THLL GADLR +Q LLGH L+TTQ YT ++T + +++ + HPRA Sbjct: 246 TLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTHPRA 299 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 104/293 (35%), Positives = 161/293 (54%), Gaps = 9/293 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 RI + +L L + +T +AYRRDL + + AT + ++ +A G Sbjct: 26 RIAGYDQSLQLA-GKSPHTRSAYRRDLQALAALQGAQ--DPATLTAQQIRLAVARLHAKG 82 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP- 125 + S AR+LSA R F +L ++ +P + PK P+ LPK L LL AP Sbjct: 83 HIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPKSPKTLPKALPVDATSALLDAPI 142 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 + L LRD+AM E+LY+ GLR+SEL GL ++D+ L +G++ GKGNK R++P+G +A Sbjct: 143 DPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLGEGLLTAHGKGNKTRILPIGRQA 202 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 LE +L + +F + ++++ + R++ +A G + PH+ Sbjct: 203 RQALERWLAIR----PSQPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHG-SDRHVHPHM 257 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FA+HLL DLR VQ LLGH++LSTTQIYT + + L +++ HPRA Sbjct: 258 LRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRA 310 >UniRef50_Q72RY9 Tyrosine recombinase xerC n=6 Tax=Leptospira RepID=XERC_LEPIC Length = 318 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 175/300 (58%), Gaps = 7/300 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 + ++F++ L +EKN ++NT+NAY DL E+ L + + D+++ A Sbjct: 21 ESLNETAKKFINYLKIEKNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAY 80 Query: 62 RLEGG-YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + S +R LS++R ++ L RE + +P+ L+ PK+ + +PK+ + E Sbjct: 81 LAKKHEIDRRSQSRKLSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEE 140 Query: 121 LLQ--APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 +L+ + + E+RD+AM+EVLY++GLRV ELV ++ +S V++V+GKG KER Sbjct: 141 ILEFESENASEVSEIRDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERF 200 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 V G+EAV L+ YLE+ + +F +QR +++T + + + G + Sbjct: 201 VYFGKEAVSSLQKYLEYRNVSFPDAEE---IFLNQRGKKLTTRGVRYILNERRKKMGWE- 256 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + ++PH RH FAT LL+ GA++R VQ LLGHS LSTTQIY V+ E++++++++ HP A Sbjct: 257 KTITPHKFRHTFATDLLDAGAEIRAVQELLGHSSLSTTQIYLSVSKEKIKEVYRKAHPHA 316 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 102/294 (34%), Positives = 165/294 (56%), Gaps = 8/294 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 I +F++ L + + +TL AYR D+ ++ + + A + +L+ LA+ Sbjct: 2 DEAIRRFIEHLAVA-GRSPHTLAAYRADIELLENMMQAKSA--RDATAAELRKALAKLHA 58 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + S AR LS+ R+ + +L R RED+P+A L +PK + LPK L LL Sbjct: 59 QGLSSRSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDR 118 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + L+ RD+A+ E++Y+ GLR+SE V L + D+ ++R+ GKG KERLVP+G E Sbjct: 119 IEGESELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIRGKGGKERLVPIGAE 178 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 A+ L T+L G+ LF + ++ + R++ +A+ G + + PH Sbjct: 179 AMLRLRTWLGER----SAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTG-AGQHVHPH 233 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH+FA+H+L DLR VQ LLGH++LS+TQIYT + + L +++ HPRA Sbjct: 234 MLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRA 287 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 112/297 (37%), Positives = 166/297 (55%), Gaps = 8/297 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 + A ++ +L L E+ ++ T +Y RDL+ + E GL L + ++ +A+ Sbjct: 23 NHAYLQGYLAWLLGERRYSKLTAESYARDLAHLFE--LSTGLALNELKVSHIRRYIAQLH 80 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S ARLLSA R + YL R+ D+P L +PK + LP+ LS Q R++ Sbjct: 81 SSGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVD 140 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI--SLRQGVVRVIGKGNKERLVPL 181 P D P +RDKAM E+ Y++GLR+ EL+ L I + G VRV GKG+K R+VPL Sbjct: 141 LP-TDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPL 199 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G A+ L +L RP L N LF R +++ + R+K + + GI S + Sbjct: 200 GGCAISALHEWLA-VRPTLANI-GERALFVGARGARISPRVVQLRMKQWGIKQGITS-SV 256 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH+LRH+FATH+L DLR VQ +LGH+ +STTQ+YTH+ + L +++ HPRA Sbjct: 257 HPHMLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTHLDFQYLSKIYDAAHPRA 313 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 117/299 (39%), Positives = 178/299 (59%), Gaps = 13/299 (4%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 FL+ L +E+ LA N++ AYRRDL +L + +L+ S+ + E Sbjct: 13 SSFLNHLQIERGLAANSIAAYRRDLVKFSIFLGSK--SLSEVDSNAINDFEISLREAKLS 70 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 S R+ S +R F++L +E + DP+ +A K +RLPK L+ +Q+ ++ + Sbjct: 71 VASINRVDSTLRSFFKHLQQE-YGYADPTLEIAPQKSARRLPKALTISQIVSMIDVAYRE 129 Query: 129 -QPLELRDKAMLEVLYATGLRVSELVGLTMSD---ISLRQG---VVRVIGKGNKERLVPL 181 QP+ RD+AMLE+LY++G RVSEL+G+ ++D I G +++ GKG KER+VPL Sbjct: 130 GQPITARDQAMLELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPL 189 Query: 182 GEEAVYWLETYLEHGRPWLLNGVS--IDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 G A +E YL RP L + S LF + R +++RQ+ W + A AGI +E Sbjct: 190 GSFATKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGI-TE 248 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPHV RH++ATHLLN GAD+RVVQ LLGH+ ++TTQIYT + +++R+ + HPRA Sbjct: 249 HVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRA 307 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 116/292 (39%), Positives = 157/292 (53%), Gaps = 10/292 (3%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 R+E FL+ L LE+ + NT AYRRDLS V + RG + D + LA G Sbjct: 13 RMESFLEYLSLERAFSPNTCQAYRRDLSKYVSFCAERGRDPVPPEVDTVSLFLASLRSQG 72 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R + ++ ++L +DP P P +P L+E +V RLL+A Sbjct: 73 AAKSSVQRAAACIKSFSRFL---GEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATA 129 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D P +LRD+AM+E+LY GLR SEL LTM D+ L G VRV GKG+K R++PL E Sbjct: 130 GDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETR 189 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 LE YL+ G +F R R+ W I+ A I + +L PH+L Sbjct: 190 SALERYLKVR------GTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHIL 243 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 RH+ ATHLL G DLR +Q LLGHS + TT++YTH E LR ++ + HPRA Sbjct: 244 RHSCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTHFDLE-LRDVYDRSHPRA 294 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 115/302 (38%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 + LA+I+ F+ + + L+ T+ AY + L +W + S DL++ LAE Sbjct: 8 SELLAQIDDFIVFISCVEGLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAE 67 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 G +T+ A LSA+R F++L R +PK + LP L+ ++ L Sbjct: 68 FRRDGRASTTVAAHLSALRSFFRWLEYSGHRAGAVPLATVAPKQRRELPHVLTAEELAAL 127 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 AP + P+ LRD AMLE+ ATG R+SEL L + D+ + + V ++GKG+KER+VPL Sbjct: 128 FDAPDLSCPVGLRDAAMLELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPL 187 Query: 182 GEEAVYWLETYLEHGRPWLLN-----GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 A+ E YLE+GRP LL G + +F S R + M +R AGI Sbjct: 188 YARAIEVYERYLENGRPNLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGI 247 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 S+ ++PH +RH FAT LL GADLR VQ LLGH+ LSTTQIYTH+ +RL+ + HP Sbjct: 248 SSD-ITPHAMRHTFATELLGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVARAHP 306 Query: 297 RA 298 R Sbjct: 307 RG 308 >UniRef50_A6TR58 Tyrosine recombinase XerD n=8 Tax=Clostridiales RepID=A6TR58_ALKMQ Length = 294 Score = 342 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 108/293 (36%), Positives = 173/293 (59%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEG 65 I F+ L EK+L+ NTL +Y+RD+ +L + + + L + Sbjct: 4 LINNFIIYLKNEKHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKE 63 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G A++ +R L+++R + YL K + DP+ +L SPK+ ++ P L+ +VE LLQ P Sbjct: 64 GRAASTISRSLASLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 L P +RDKAMLE+LYATG+RV+EL+ L + D+++ G +R KER++P+G + Sbjct: 124 LNTTPKGIRDKAMLELLYATGIRVTELISLNLEDVNVNLGYIRCC-NNTKERVIPIGTLS 182 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + L+ Y+ + R LF + ++TRQ FW IK Y A I+ + ++PH Sbjct: 183 LIALQKYINYYRDAFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIE-KSITPHT 241 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHL+ +GADL+ VQ +LGHSD+STTQ+Y + +++ ++ + HPRA Sbjct: 242 LRHSFATHLIENGADLKSVQEMLGHSDISTTQVYAQLTKHKIKDVYNKTHPRA 294 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 118/307 (38%), Positives = 165/307 (53%), Gaps = 20/307 (6%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLE 64 IE FL L +++ L+ T AY DL + +L RG +LA +QA LA Sbjct: 22 IESFLAWLDVQRGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLYA 81 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G ++ AR L+A R F+Y R E++ +A + +PK QR P+ L+ Q +L Sbjct: 82 LGEAKSTMARKLAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLDT 141 Query: 125 PL-------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIG 171 P L RD A+ E+LY +GLR+SE +GL ++D+ L + VVRV G Sbjct: 142 PDALAGTGSPRIPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVFG 201 Query: 172 KGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYA 231 KG +ER+ PL + +V L +LE L LF R ++ R+ RI+ Sbjct: 202 KGARERMSPLSDTSVTALRAWLEQR--GTLAPEGEKALFVGARGGRLDRREAMRRIERLC 259 Query: 232 VLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLH 291 AG++ +SPH LRH+FATHLL+ GADLR VQ LLGH L+TTQ YT V+ ERL L+ Sbjct: 260 RNAGVEP--VSPHALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLY 317 Query: 292 QQHHPRA 298 + HPRA Sbjct: 318 DEAHPRA 324 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 111/295 (37%), Positives = 166/295 (56%), Gaps = 2/295 (0%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 +E+F+ L EK L+ + R+ L +L LA D L A L + Sbjct: 2 QTHLERFIRFLAAEKGLSTAYQLSVRQTLEEFARFLEMDNTGLAQTGIDTLSAFLRHLQD 61 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G +S + +R F++L E DPS L P+ LP L + V LL++ Sbjct: 62 RGMARSSMRVEMVHLRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLES 121 Query: 125 PLIDQ-PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 I PL RD+A+LE++YA G+RVSE++ + + VRV+GKGNK RLVP+G Sbjct: 122 IDIQDIPLGCRDRALLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGR 181 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A+ L+ YLE GRP L+ + +F + R + +TR+ ++ A AG++ + + P Sbjct: 182 SALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLE-QHVFP 240 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FATHLL +GADLR++Q +LGH+D+STTQIYTH+ +RL +H + HPR Sbjct: 241 HILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPRG 295 >UniRef50_Q253S9 Tyrosine recombinase xerC n=7 Tax=Chlamydiales RepID=XERC_CHLFF Length = 312 Score = 341 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 154/308 (50%), Gaps = 21/308 (6%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------------------LTLATA 50 FLD L K + +TL Y DL+ +L G L + Sbjct: 7 AFLDYLKNIKAASPHTLRNYCIDLNSFKVFLEKHGKLSPSMPICLFSKERQETNLPFSLF 66 Query: 51 QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 110 D ++ + E ++ + R LSA++ Y + + +DP+ + P+LP+ LP Sbjct: 67 TKDAVRLYILELMQENKAKRTIKRRLSAIKSFSHYCLKHRILLEDPTETIHGPRLPKELP 126 Query: 111 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 ++ QVE L+ P + + LRD+ +LE+ Y++GLR+SE+V L DI ++R+ Sbjct: 127 SPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDFNSNLIRIR 186 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 230 GKG KER++P+ A WL+ YL H +F + ++T ++ + + Y Sbjct: 187 GKGKKERIIPITTLAAQWLKQYLNH-PERAGVAKDSQAIFLNCFGTRLTTRSIDRKFQKY 245 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 L+G+ ++PH +RH ATH L +G DL+ +Q LLGHS L TT IYTHV+ + +Q Sbjct: 246 LRLSGLSG-NITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTHVSMKLKKQT 304 Query: 291 HQQHHPRA 298 H + HP Sbjct: 305 HNESHPHG 312 >UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular organisms RepID=XERC_RALPJ Length = 328 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 106/309 (34%), Positives = 168/309 (54%), Gaps = 18/309 (5%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLE 64 +I +LDAL E+ L+ +TL +Y R+L+++ + L QS ++ ++A+ Sbjct: 18 QIAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHG 77 Query: 65 GGYKATSSARLLSAVRRLFQYL-YREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G S AR LSA R F+++ R+ +P + +PK P+RLPK LS Q L++ Sbjct: 78 DGLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALME 137 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI-----------SLRQGVVRVIGK 172 D +RD+A+ E+ Y+ GLR+SELV L M + L V+V+GK Sbjct: 138 QLPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGK 197 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWL---LNGVSIDVLFPSQRAQQMTRQTFWHRIKH 229 G+K R VP+G +A L +L LF S R +++ ++ R+K Sbjct: 198 GSKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKR 257 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 A+ AG+ ++ + PHVLRH+FATH+L DLR VQ LLGH+ +++TQ+YT + + L + Sbjct: 258 NAIAAGVPAD-VHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYTSLDFQHLAK 316 Query: 290 LHQQHHPRA 298 ++ Q HPRA Sbjct: 317 IYDQAHPRA 325 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 108/316 (34%), Positives = 161/316 (50%), Gaps = 23/316 (7%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH------RGLTLATAQSDDLQAL 58 L +++F D L E+ L+ +T YRRDL + LA D + A Sbjct: 3 LPYLQRFFDHLMQERRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAF 62 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 L G T+ R ++A+R F Y+ RE +P+A ++SPK P+RLP+ S Q Sbjct: 63 LGRGHREGLARTTMQRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQT 122 Query: 119 ERLLQ-------APLIDQP--------LELRDKAMLEVLYATGLRVSELVGLTMSDISLR 163 LL +P LRD A+LE+LY+ GLR+SE L +D+ LR Sbjct: 123 LNLLDKSTPRPLSPEASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLR 182 Query: 164 QGVVRVI-GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQT 222 G +RV GKG K+R+VPLG AV +E +L+ + +F Q +++ + Sbjct: 183 GGELRVRHGKGGKQRMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSRE 242 Query: 223 FWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHV 282 ++ + + E ++PH LRHAFATHLL GADLR +Q ++GH+ LS TQ YTH+ Sbjct: 243 GQRLLEKWRARLDLP-ESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHL 301 Query: 283 ATERLRQLHQQHHPRA 298 + L +++ HPRA Sbjct: 302 DMQALAKVYDAAHPRA 317 >UniRef50_B4S5H6 Integrase family protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S5H6_PROA2 Length = 335 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 97/323 (30%), Positives = 168/323 (52%), Gaps = 27/323 (8%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------LTLATAQSDD 54 + ++ FLD + LE++ + +T AYR D+ ++ ++ + A+ D Sbjct: 14 ESQYPFLKGFLDYVTLERHFSRHTREAYRTDICQFYTFIRYQHTLADKDPIDPASISVLD 73 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 ++ + E LE G + S AR L+AV+ + YL + + + +P+ + +P LS Sbjct: 74 VRLFMGELLEKGLQPKSIARKLAAVKSFYNYLLETGAVKVSVPSQVITPRFSKPVPGFLS 133 Query: 115 EAQVERLLQA---------------PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSD 159 E + E+L RD+A+LEVLY GLR+SE++GL + Sbjct: 134 ERETEKLFDELLSLPAPGEALGAVRAGDGGFTYARDRALLEVLYGCGLRISEVIGLQYEN 193 Query: 160 ISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID----VLFPSQRA 215 ++L+ ++RV GKG K+R+VPLG A L Y E R + +F +++ Sbjct: 194 VNLQDSLLRVSGKGGKQRIVPLGGPARTALRNYFEVRRNFFRMKNEESPDASYVFVTKKG 253 Query: 216 QQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLST 275 +++ + Y + + +PHVLRH+FATH+LN GADL+ V +LGH++L+T Sbjct: 254 RRIYPVLVQRVTRKYLSAV-TEIKYKNPHVLRHSFATHMLNSGADLKSVSEMLGHTNLTT 312 Query: 276 TQIYTHVATERLRQLHQQHHPRA 298 T+IYTHV R+++++ + HP+A Sbjct: 313 TEIYTHVTFGRIKEVYLKAHPKA 335 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 178/301 (59%), Gaps = 3/301 (0%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLA 60 M Q A + FL+ + +E+ A NTL AY +DL +L G L A ++ ++A Sbjct: 1 MSQGEAWADAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQ 60 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G ++AR SAVR+ ++++ E +R DDPS +A+PK + LPK L ++ER Sbjct: 61 DLGARGLSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIER 120 Query: 121 LLQAPL-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 LL A D LR M+E++YA+GLR+SEL+ L + ++ + V GKG KERL Sbjct: 121 LLAAASAKDSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLA 180 Query: 180 PLGEEAVYWLETYLEHGRPWLLNG-VSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGID 237 PL + A ++ YL +L G LFPS+ A ++T + ++ A+ AGID Sbjct: 181 PLNDAARAAVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGID 240 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +K+SPHVLRHAFATHLL GADLRV+Q LLGH+D++TTQIYTHVA E L + Q HP Sbjct: 241 RQKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPL 300 Query: 298 A 298 Sbjct: 301 G 301 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 107/301 (35%), Positives = 161/301 (53%), Gaps = 11/301 (3%) Query: 1 MKQDL-ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQAL 58 M Q + ++ FLD L + T+ +Y +DL +WL RG+ L + D++ Sbjct: 1 MTQSVGDAVKVFLDDAAL--RFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMH 58 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 ++ L G +S AR LS +R ++ + + ++ PK +RLP+ L E +V Sbjct: 59 ASDLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEV 118 Query: 119 ERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 L+ D + LRD+A+LE LYATG+RVSE V L + D+ L G RV+GKG +ER Sbjct: 119 AALIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERY 178 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA-GID 237 V +G AV L YL +F ++R ++T ++ ++ G+ Sbjct: 179 VMVGRRAVDALRRYLPLRD----RMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGL- 233 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + H LRH+FATH+LN GADLR VQ LLGH+ LS+TQIYTH + E+L + + HPR Sbjct: 234 -RSIHVHGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHTSREQLARAYYAAHPR 292 Query: 298 A 298 A Sbjct: 293 A 293 >UniRef50_Q311L4 Site-specific recombinase XerD-like n=2 Tax=Desulfovibrio RepID=Q311L4_DESDG Length = 332 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 96/304 (31%), Positives = 155/304 (50%), Gaps = 17/304 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLA---TAQSDDLQALLAERLEG 65 E ++ L LEK + T+ Y DL+ ++L R ++L + LA+ Sbjct: 20 EMYMGYLALEKGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHRQ 79 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 +S R LSA+R F+YL R+ F P+ + +P+ QR P+ L+ Q +L Sbjct: 80 HVGKSSMGRKLSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTR 139 Query: 126 LIDQPLEL-------------RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 RD A+ E+LY +GLR+SE + L + G+++V GK Sbjct: 140 TQAASRAQVHVRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGK 199 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAV 232 G+KER+VPL + + L+ +L+ ++G + +F R ++ R+ I+ Sbjct: 200 GSKERIVPLSDTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLCR 259 Query: 233 LAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 AG+ + +SPH LRH+FATHLL GAD+R VQ LLGH L+TTQ YTH+ ++ +++ Sbjct: 260 AAGLP-QAVSPHALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEVYD 318 Query: 293 QHHP 296 + HP Sbjct: 319 RAHP 322 >UniRef50_B7GQE1 Tyrosine recombinase xerC n=6 Tax=Bifidobacteriaceae RepID=XERC_BIFLI Length = 355 Score = 339 bits (871), Expect = 6e-92, Method: Composition-based stats. Identities = 118/349 (33%), Positives = 167/349 (47%), Gaps = 61/349 (17%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I+ F+ L + L+ NTL AYR DL+ + RG+ L DDL++ +A Sbjct: 10 IDSFVSYLKSNRGLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMA-VESRD 68 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + +S AR AVR F + Y DP+A L +P +P LP L+E+Q E+LL Sbjct: 69 HARSSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLDVAE 128 Query: 127 --------------------------------------------------IDQPLELRDK 136 R+ Sbjct: 129 HAVATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNA 188 Query: 137 AMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHG 196 A+LE+LYATG+RV+ELV + ++DI ++V GKGNK+R+VP G A LET+LE G Sbjct: 189 AILELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQG 248 Query: 197 RPWLL-------NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 RP L + + LF R ++ ++ + A AG+ +SPH LRH+ Sbjct: 249 RPVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVP--DISPHALRHS 306 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 ATH+L+ GADLR VQ +LGHS L TTQ YTHV+ E+L+ + Q PRA Sbjct: 307 AATHILDGGADLREVQEMLGHSSLKTTQRYTHVSIEQLKNRYGQAFPRA 355 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 106/295 (35%), Positives = 161/295 (54%), Gaps = 9/295 (3%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERL 63 +I +F+ L +E+ A NT AY RDL ++ + + + A+ S++L + Sbjct: 2 QKQINRFILYLKVERGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMR 61 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + R LS++R YL + E + + L SPK+ + LPK L ++ ++L Sbjct: 62 HQNISGRTIRRHLSSIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQML- 120 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 P ELRD AM+EVLY+ GLRVSELVGL + D+ QG +RV+GKG+K R PLGE Sbjct: 121 TPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGE 180 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 A + YL+ + LF + R ++++ +T + IK+ A+ GI + P Sbjct: 181 SAQKSINRYLQK------TSHTNKALFVNNRQERISTRTVQNIIKNRALSVGI-KVNVHP 233 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRHA ATH L DLR VQ LGH + +TQ+YTH+ L +++ + HPRA Sbjct: 234 HMLRHAAATHFLQSSHDLRSVQEFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRA 288 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 169/303 (55%), Gaps = 13/303 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---------LTLATAQSDDLQ 56 + + ++L L ++L+ T + YRRDL +V + ++L S D++ Sbjct: 15 SLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHDIR 74 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 +A G S AR+LSA R ++YL R +P + PK P +LP LS Sbjct: 75 HFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALSPD 134 Query: 117 QVERLLQ-APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 + +LL P + L RD A+ E+ Y++GLR++EL L +DI G VRV GKGNK Sbjct: 135 EAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKGNK 194 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 R+VP+GE A+ L+ +L WL+ G + LF SQR +++ +T +R+ A L Sbjct: 195 TRIVPVGELALRALQAWLPLRSAWLIPGET--ALFLSQRGRRIHPRTIAYRLHQRAQLQN 252 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 +DS ++ PH LRH+FA+HLL DLR VQ +LGHS + +TQ+YTH+ + L +++ Q H Sbjct: 253 LDS-RVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAH 311 Query: 296 PRA 298 PRA Sbjct: 312 PRA 314 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 116/297 (39%), Positives = 157/297 (52%), Gaps = 9/297 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +E F L + + NT+ YR DL ++ H G L + ++A LA+ G Sbjct: 22 VEDFCGHLSALRR-SPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAG 80 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP- 125 A + R SA R F++ E DP+ L S K+P+RLP L Q +L Sbjct: 81 ASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAV 140 Query: 126 ----LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + P RD A+LEVLY GLRV EL GL + D+ + V+V GKG+KER VP+ Sbjct: 141 AQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPM 200 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G A+ ++T+L R + S LF R +++ ++ + + A DS L Sbjct: 201 GAPALRAIDTWLP-RREEWVGPHSGQALFLGARGRRIDQRVVRRVVH-TDLRAEPDSPDL 258 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PH LRHA ATHLL GADLR VQ +LGH L+TTQIYTHV+TERLR +Q HPRA Sbjct: 259 GPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 161/303 (53%), Gaps = 15/303 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL---TLATAQSDDLQALLAER 62 + F + L E+ + T+ YR+ WL G+ Q +L+ + E Sbjct: 27 EWWQPFENYLAHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIE- 85 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + + + +S +R F++ R + +P + PKL +RLPK L+E Q+ RLL Sbjct: 86 AQRRFGRRTLHNHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLL 145 Query: 123 QAPL-------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 P ID RD+ +LE+LY GLRVSEL GL I L GV R++GKG K Sbjct: 146 AGPQQLLASESIDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRK 205 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 ERL P+G AV L + + + +QR +M+ + +K Y LA Sbjct: 206 ERLCPIGRVAVAVLR---KFRDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAE 262 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + + L+PH LRH++ATHLLN GADLR+VQ LLGH+ L+TTQ+YTHV+ RL++++ + H Sbjct: 263 LPMD-LTPHKLRHSYATHLLNAGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAH 321 Query: 296 PRA 298 PRA Sbjct: 322 PRA 324 >UniRef50_C5VK74 Tyrosine recombinase XerC n=9 Tax=Prevotella RepID=C5VK74_9BACT Length = 294 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 161/297 (54%), Gaps = 6/297 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAER 62 + +E+FLD + E+N + T+ YR+DL+ + L+ + SD ++ + Sbjct: 1 MPMVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYM 60 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 ++ G A+S R LSA+R +++ R K E DP L PK + LP+ L E+++ERLL Sbjct: 61 MDRGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLL 120 Query: 123 QAPL-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + + D ++ ++ ++ Y TG+R+SEL+GL DI ++V GK NK+R+VP Sbjct: 121 DSKMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPF 180 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G+E Y E + F +++ ++MT +K ++ Sbjct: 181 GKELADVFAQYQEVRNATVKG--DSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKR- 237 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPHVLRH FAT +LNH A L V+ LLGH LSTT+IYTH E+L+++++ HPRA Sbjct: 238 SPHVLRHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTHTTFEQLKKVYKNAHPRA 294 >UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0Y3M6_9CAUL Length = 313 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 175/300 (58%), Gaps = 8/300 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 ++ FL+ + +E+ A NTL AY +DL +L L A ++ ++A + G Sbjct: 8 WVDAFLEMMAVERAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARG 67 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++AR SAVR+ ++++ E +R DDPS +A+PK + LPK L A++ERLL A Sbjct: 68 LSPATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAAT 127 Query: 127 ------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 D LR ++E++YA+GLR+SEL+ L ++ ++ + V GKG KERL P Sbjct: 128 APNTEMGDSAQGLRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAP 187 Query: 181 LGEEAVYWLETYLEHGRPWLLNG-VSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDS 238 L + A + YL R +L G LFPS+ ++T + + A+ AGID Sbjct: 188 LNDAARAAVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDR 247 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +K+SPHVLRHAFATHLL GADLRV+Q LLGH+D++TTQIYTHVA E L + Q HP Sbjct: 248 DKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHPLG 307 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 160/299 (53%), Gaps = 12/299 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLA 60 A + +L+ + E +E+T+ AYRRDL + L G D A L Sbjct: 37 AHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAALR 95 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G A + AR LS+ R+ +L + DP+A ++ PK PQR+PK L + + R Sbjct: 96 RLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQEWLNR 155 Query: 121 LLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P PL +RD A+ E++Y +GLRVSE+ GL D+ L + V V GKG K+R V Sbjct: 156 MLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 215 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PL ++ L+ YL P LF + +++++ R+ +A + G D Sbjct: 216 PLTGKSAEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAING-DGR 270 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH++RH++A HLL D+R VQ LLGHS LSTTQIYT + + + +L+ + HPRA Sbjct: 271 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 329 >UniRef50_B2GFZ3 Tyrosine recombinase XerC n=5 Tax=Bacteria RepID=B2GFZ3_KOCRD Length = 378 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 13/303 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA-QSDDLQALLAERLEG 65 + +F L LE++ +ENT+ +Y D++ + W+ G+ A D L+ LA+R + Sbjct: 78 YLPEFRAHLSLERSRSENTVRSYTSDVADLSRWMLEHGIDGADLLDRDALRGWLAQRHQR 137 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 G +S +R ++AV F++ + DP+A L P+ + LP + + +L A Sbjct: 138 GLARSSVSRGIAAVHTFFRWAVDTQGLRHDPAAGLRGPRPARHLPDVVGATALAEMLDAL 197 Query: 126 ----------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 D L RD A+LE+LYATG R+SELVGL + + Q V+ + GKG+K Sbjct: 198 GDVALGPHEEESDAALAARDWALLELLYATGARISELVGLDRAHVDRAQHVLTITGKGDK 257 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 +R VP GE A L + EH RP L + D +F R ++ + + Sbjct: 258 QRRVPYGERAGDALAVW-EHRRPALATERAGDAVFVGARGGRIDPRVARRVVADALNDV- 315 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 D+ PH LRH+ ATHLL+ GADLR VQ LLGH+ ++TTQIYTHV+ ER+++ + Q H Sbjct: 316 PDTSARGPHSLRHSAATHLLDGGADLRTVQELLGHATVATTQIYTHVSVERIKRAYSQAH 375 Query: 296 PRA 298 PRA Sbjct: 376 PRA 378 >UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroidales RepID=B6YR66_AZOPC Length = 299 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 5/296 (1%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH-HRGLTLATAQSDDLQALLAERL 63 ++ FL L E+N + TL Y DL ++ G + T S ++ + + Sbjct: 7 FNQLSIFLCHLRYERNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLM 66 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL- 122 + Y S R LS +R F+YLYR E +P + + + LP + + ++ LL Sbjct: 67 DRNYSPRSVNRKLSTLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLL 126 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + + RD+ +LEV Y+TG+R SELVGL DI ++RV GKGNK+RL+P Sbjct: 127 DLSKGEGFEDERDRTILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFS 186 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 + L Y + + F + + + + +K ++ S Sbjct: 187 KTLEEILSYYKTIRDETIWDV--SKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKR-S 243 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH FAT +LN+GA+L V+ LLGHS L++T+IYTH+ E L++ ++Q HPRA Sbjct: 244 PHVLRHTFATSMLNNGANLNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 112/294 (38%), Positives = 165/294 (56%), Gaps = 3/294 (1%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 + F + L +E+N + T AY DL + L T D+ A G Sbjct: 6 LTAFFEMLSVERNASPRTREAYGHDLLDLRNHAGIDADGLLTLNEGDIAGFFAALDARGL 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 +++ R +AVR+ +++ RE ++DPS +A+ K + LPK LS +V+ L+ A Sbjct: 66 ASSTLQRKRAAVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADA 125 Query: 128 DQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 R + ++E+ YA+G+RVSE+V L + + + V GKG ERLVPL A Sbjct: 126 KDAHQATRLQCLIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSAR 185 Query: 187 YWLETYLEHGRPWL-LNGVSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 ++ YL+ +L + LF S+ A +TR+ + A+ AGID ++SPH Sbjct: 186 AAIKDYLDIRPLFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSPH 245 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VLRHAFATHLL GADLRVVQ LLGH+D+STTQ+YTHVATERL+++ + HHP + Sbjct: 246 VLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLS 299 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 131/335 (39%), Positives = 182/335 (54%), Gaps = 38/335 (11%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA 60 + +A + +LD L +E+ +A NT+ +YRRDL+ +++L G T +A + D+ L Sbjct: 18 PELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRVADVTAADVSDFLV 77 Query: 61 ERLEG-----GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 G A+S+AR + A R ++L E E DPS + P +RLPK L Sbjct: 78 CLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHPPTPARRLPKALPV 137 Query: 116 AQVERLLQAP---LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG------- 165 + RLL A D P LRD+A+LE+LYATG R+SE+VGL + DI L G Sbjct: 138 EAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDDIDLGPGRLAGRSS 197 Query: 166 -----------------VVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDV 208 VVR+ GKG KERLVP+G A+ LE YL GRP L Sbjct: 198 TDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVRGRPVLAAAGRGAG 257 Query: 209 -----LFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRV 263 LF + R +++RQ+ W + A AG+ + +SPH LRH+FATHLL GAD+R Sbjct: 258 PARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRS 317 Query: 264 VQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 VQ LLGH+ ++TTQIYT V + LR+++ HPRA Sbjct: 318 VQELLGHASVTTTQIYTLVTVDALREVYVTAHPRA 352 >UniRef50_C7MB85 Site-specific recombinase XerD n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MB85_BRAFD Length = 332 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 120/325 (36%), Positives = 169/325 (52%), Gaps = 31/325 (9%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHH-RGLTLATAQSDDLQALLAER 62 D A ++ F D L LE+ +E+T+ AYRR+ + ++ L +TL L++ L+ R Sbjct: 9 DDAVLDAFADHLHLERGRSEHTVRAYRREAAGLLAHLRTVERITLPELDVTALRSWLSAR 68 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 E G A++ AR ++VR +L D L +P+ + LP L+ Q LL Sbjct: 69 AETGASASTLARSAASVRTFTTWLASTGRIPHDVGGRLRAPRRGRHLPTVLTGDQAGELL 128 Query: 123 QAPL------------------------IDQPLELRDKAMLEVLYATGLRVSELVGLTMS 158 D+ + LRD A+LE+LY++GLRVSELV L S Sbjct: 129 DGLDGSARDDSAAPPREIAAAPRAEQDPRDRAVLLRDAAVLELLYSSGLRVSELVALDRS 188 Query: 159 DISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL-----LNGVSIDVLFPSQ 213 I + G VRV GKG++ER+VP+G A+ L+ + GRP L D LF Sbjct: 189 RIDRQHGTVRVRGKGDRERIVPVGLPALEALQRWESEGRPVLLAAATPGTPPGDALFLGV 248 Query: 214 RAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDL 273 R ++ + + + AGI S ++PH LRH+ ATHL+ GADLR VQ LGHS L Sbjct: 249 RGGRLGDRAVRTLVDRHVAEAGI-SRHVTPHTLRHSAATHLVEGGADLRSVQDFLGHSSL 307 Query: 274 STTQIYTHVATERLRQLHQQHHPRA 298 +TTQIYTHV+ ERLR+ Q HPRA Sbjct: 308 ATTQIYTHVSAERLRRTVDQAHPRA 332 >UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NTN2_9MICC Length = 422 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 159/300 (53%), Gaps = 10/300 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +++F L EK+ +E T+ +Y DL ++ RG+ L + + ++ L Sbjct: 124 LDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASLIREWLGSLHLRQ 183 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL---- 122 ++ R S +R F + E+ +P+ + +PK LP LS Q+ +LL Sbjct: 184 AARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQ 243 Query: 123 --QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 +A LR +A++EVLYA+G+R+SEL GL + + VRV+GKGNKER+VP Sbjct: 244 ERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVP 303 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 LG A+ L ++ +GRP + S LF R + + + ++ Sbjct: 304 LGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVE-NT 362 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + HVLRH+ ATHL++ GAD+R VQ LLGHS L+TTQIYTHV+ +RL + + + HPRA Sbjct: 363 QASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 422 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 98/293 (33%), Positives = 161/293 (54%), Gaps = 6/293 (2%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 ++ FLD + L + + +T AYRRD+ + +L + + T + L + Sbjct: 7 LKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTTLRQKN 66 Query: 67 -YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 +S R LS++R F+YL + +P + + K + LP+ L+ QV+ LL + Sbjct: 67 HLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQDLLDSF 126 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 ++ LR++ ++E+LYA GLR+SE + + DI R VRV+GK +KER+VP +E Sbjct: 127 DLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVPFYKEL 186 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 L YL+ + D F + + ++ ++ ++ + + L PHV Sbjct: 187 GDLLTKYLKKYGSF---SQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQ-LHPHV 242 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL++GADLR+VQ LLGH +LSTTQIYTHV+ + LR++ + HP + Sbjct: 243 LRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLS 295 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 106/297 (35%), Positives = 169/297 (56%), Gaps = 13/297 (4%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 A + FLD L + L+ T+ AYR DL ++ L H ++ + ++A L + Sbjct: 20 NIEAILMDFLDELTYSRRLSGATVRAYRADLMPLLAGLDH----ISELSTPVIRAHLGAK 75 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G +S ARL +++R+ +L + + DPS L++PK Q LP+ LS +VE + Sbjct: 76 HAEGAARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAI 135 Query: 123 QAPLI-DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + D + RD A++E+LYATG+RV EL +SD++ + ++ V+GKG+K+R+VP Sbjct: 136 EKVSSEDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPF 195 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G A L+ +L+ + + + LF R ++ + I +A + Sbjct: 196 GAPAEAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA--------DV 247 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 SPH LRH+ AT ++ GADLRVVQ +LGHS L+TTQIYTHV+ +RLR++H++ HPRA Sbjct: 248 SPHALRHSAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 114/349 (32%), Positives = 162/349 (46%), Gaps = 58/349 (16%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL---ATAQSDDLQALLAE 61 + +F D L E+ + +T AY RDL+ R A D++A LA Sbjct: 14 QRWLARFDDYLRTERGGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHLAG 73 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 E + AR LSA+R F +L + +++P+ + SPK + LP+ L RL Sbjct: 74 LYERNDA-ATMARKLSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAFRL 132 Query: 122 LQAPLI---------------------------------------------DQPLELRDK 136 ++AP +PL+LRD+ Sbjct: 133 IEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLRDR 192 Query: 137 AMLEVLYATGLRVSELVGLTMSDIS---LRQGVVRVI-GKGNKERLVPLGEEAVYWLETY 192 A+ EVLY +GLRV E L + DI L +VRV GKG KER+VPLG +AV L+ Y Sbjct: 193 AIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALDAY 252 Query: 193 LEHG---RPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHA 249 L R LF S R ++T ++ I A G + + +PH LRH+ Sbjct: 253 LNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVG--AYEATPHALRHS 310 Query: 250 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 FATHLL+ G DLR +Q LLGH+ L++TQIYT V+ + L ++ HPRA Sbjct: 311 FATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVYDASHPRA 359 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 334 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 157/303 (51%), Gaps = 12/303 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLAT---AQSDDLQAL 58 + +I +L+ L N +E+++ AY DL + +L L L+ Sbjct: 7 SELERQIVLYLEDLARAGN-SEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLILREW 65 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 LA A + R L+AVR LF++L RE + + + +PK P++LP+ ++ QV Sbjct: 66 LAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQV 125 Query: 119 ERLLQAP---LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 L+ +++P RD+A+ E+LY G+RVSEL GL + DI +G +RV GKG K Sbjct: 126 NSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRGKGKK 185 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAG 235 ER VPL +A LE YL +F + R ++T + +K YA Sbjct: 186 ERQVPLPGQAAQSLERYLAER----PVAREQPAVFVNHRRARLTTRGISGIVKLYATYLS 241 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 D + PH RHA+ATHLL GADLR +Q LLGH+ LSTTQ YT V+ L ++ + H Sbjct: 242 NDP-GIHPHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAH 300 Query: 296 PRA 298 P+A Sbjct: 301 PKA 303 >UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1G4_9MICC Length = 358 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 160/300 (53%), Gaps = 10/300 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +++F L EK+ +E T+ +Y DL ++ RG+ L + + ++ L Sbjct: 60 LDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSLHLRQ 119 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL---- 122 ++ AR S +R F + E+ +P+ + +PK LP LS Q+ +LL Sbjct: 120 AARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLLTTLQ 179 Query: 123 --QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 +A LR +A++EVLYA+G+R+SEL GL + + VRV+GKGNKER+VP Sbjct: 180 ERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERVVP 239 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSID--VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 LG A+ L ++ +GRP + + LF R + + + ++ Sbjct: 240 LGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTVE-NT 298 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 + HVLRH+ ATHL++ GAD+R VQ LLGHS L+TTQIYTHV+ +RL + + + HPRA Sbjct: 299 QASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 358 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 17/310 (5%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERL 63 +++ +LD L +E+++A NTL++YRRDL + L RG+ LA D+ L Sbjct: 7 QTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEFLVALR 66 Query: 64 EGG-------YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 G A S+AR L AVR L ++ E + D + + P +RLPK L+ Sbjct: 67 RGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVD 126 Query: 117 QVERLLQAPLIDQ----PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGK 172 +V LL++ + PL LR++A+LE+LY+TG R+SE VGL + D+ + V + GK Sbjct: 127 EVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTVLLQGK 186 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNGVS----IDVLFPSQRAQQMTRQTFWHRIK 228 G K+RLVP+G AV L+ YL GR L +F + R +++RQ+ W ++ Sbjct: 187 GGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQ 246 Query: 229 HYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 A AGI S +SPH+LRH+FATHLL GAD+RVVQ L+GH+ ++TTQIYT V + LR Sbjct: 247 DAAEHAGITS-GVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALR 305 Query: 289 QLHQQHHPRA 298 ++ HPRA Sbjct: 306 EVWAGAHPRA 315 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 111/282 (39%), Positives = 154/282 (54%), Gaps = 2/282 (0%) Query: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 + AE T +AY D V W L A L+ A E G T+ R L++ Sbjct: 32 RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRALRRYAAGLTEAGQAPTTVGRKLAS 91 Query: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 +R LF+ L + +P+ L++P+ QRLP L +V LL D L LRD+A+ Sbjct: 92 LRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTALALRDRAL 151 Query: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 E+ YA+GLR ELV L + I VRV GKG K R+VP GE A+ + YL+ RP Sbjct: 152 FELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALKAIARYLDRARP 211 Query: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVL-AGIDSE-KLSPHVLRHAFATHLLN 256 L S LF S+ ++++ R++ +A AG+ + +SPH LRH+FATHLL Sbjct: 212 ALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHLLE 271 Query: 257 HGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +GADLR +Q LLGH+ +STTQ+YT V + RLR + HPRA Sbjct: 272 NGADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHPRA 313 >UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria RepID=XERD_NEIMA Length = 291 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 140/291 (48%), Positives = 189/291 (64%), Gaps = 5/291 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 I++ L+ LWL++ L +NTLN YRRDL + L G L A DL A G Sbjct: 5 LIDRLLETLWLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLA---AAVYVDG 61 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + +S AR LSA +RL+ ++ RE R D+P+ L PK+ + +P ++E Q+ RLL AP Sbjct: 62 EQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPD 121 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 D P LRDKA+LE++YATGLRVSE VGL ++ L +G + +GKG+K+R+VP+G+E+ Sbjct: 122 TDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESA 181 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 YW+ Y RP LL G S D LF SQ+ ++RQ W +K YA AGI +SPH L Sbjct: 182 YWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG--HISPHSL 239 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RHAFATHL+ HG DLRVVQ +LGH+DL+TTQIYTHVA L+ + ++HH R Sbjct: 240 RHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVKEHHSR 290 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 159/313 (50%), Gaps = 19/313 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMV------EWLHHRGLTLATAQSDDLQ 56 +D A + F L EKN + +T AY D+ + E + + L + + Sbjct: 6 KDNALL-AFFKYLKTEKNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAK 64 Query: 57 ALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + E + R S++R L+ + RE+ + +P + + K + LP LS Sbjct: 65 GYIFSLQESKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSRE 124 Query: 117 QVERLLQAPLI---------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVV 167 + LL +P + + RD A+LE++Y+ GLR+ E + + I+L + + Sbjct: 125 DISTLLSSPAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTL 184 Query: 168 RVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLN-GVSIDVLFPSQRA-QQMTRQTFWH 225 ++ GKG K+R LG A LE Y + LN + D +F + + ++++ ++ Sbjct: 185 KIFGKGKKQRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQR 244 Query: 226 RIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATE 285 +K Y + + ++PH LRH+FATHLL+ GADLR VQ LLGH +LSTTQIYTH++T+ Sbjct: 245 NLKAYLQSCQLPPD-ITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTD 303 Query: 286 RLRQLHQQHHPRA 298 RL Q + Q HP A Sbjct: 304 RLLQAYDQAHPHA 316 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 170/295 (57%), Gaps = 8/295 (2%) Query: 4 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERL 63 ++ I+ FLD L KN ++ T+N YRRDL + + + +T +++D+ + + Sbjct: 3 NIEHIDNFLDNLLYLKNYSQETINNYRRDLLQLNSSIVDKDIT--KLENNDILMWVKKLH 60 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G + + R LS++R F +L + +++P+ + +PK ++LPK ++ ++ LL Sbjct: 61 AQGNSSKTLQRKLSSLRSFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLD 120 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGE 183 +E RD A ++LY+ G+R+SEL + + DI++ Q +RVIGKGNKER+V G Sbjct: 121 -IKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGS 179 Query: 184 EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSP 243 + + L +L + + LF SQ + +T ++ RI+ +A ++ + P Sbjct: 180 KTLINLNRWLNTRDTY---SPKCNFLFISQNGEHLTNRSIQKRIEIFAQKYA--TKHIHP 234 Query: 244 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 H+LRH+FATH+L+ DL V+ LLGH+D+S+TQIYTH+ ++L + + HPRA Sbjct: 235 HMLRHSFATHVLDSSKDLLAVKDLLGHADISSTQIYTHLNFQQLASVFDKAHPRA 289 >UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteobacteria RepID=XERD_AGRT5 Length = 331 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 136/317 (42%), Positives = 186/317 (58%), Gaps = 22/317 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 +D AR+E FL+ + E+ A NTL++Y DL+ + E+L RG +L AQ+ DL A L Sbjct: 9 RDGARLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHL 68 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G+ ATS AR LS++R+ +++LY E R DDP+ + +P+ LPK +S A V RLL Sbjct: 69 AAQGFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLL 128 Query: 123 QAPLIDQPLE-------LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNK 175 + E +R +LE+LYATG+RVSELV L + + + + GKGNK Sbjct: 129 GLAAQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNK 188 Query: 176 ERLVPLGEEAVYWLETYLEHGRPWLLNGV-------------SIDVLFP-SQRAQQMTRQ 221 +R+V L A+ +E Y E GR L LFP + + + RQ Sbjct: 189 DRMVLLSRAAIEAMEKY-EAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQ 247 Query: 222 TFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTH 281 F +K A+ AG+ + +SPHVLRHAFA+HLL +GADLR VQ LLGHSD+STTQIYTH Sbjct: 248 VFARDLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307 Query: 282 VATERLRQLHQQHHPRA 298 V ERL++L Q HHP A Sbjct: 308 VLEERLQELVQTHHPLA 324 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 158/291 (54%), Gaps = 8/291 (2%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYK 68 + FL +E+ L+ +T +Y + L + AQ+ + L E Sbjct: 8 QSFLRYCQIERRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTA--RRYLYVLYEKQLA 65 Query: 69 ATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLID 128 A++ ++ +S ++ +++ RE+ E L SPK Q LP +VE+LL+A Sbjct: 66 ASTVSQKVSCFKQFGKFMAREQGGEP-LFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQ 124 Query: 129 Q--PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 L+ RD A++EVLY TG+RV+EL G+ +S V V+GKG KER VP+G+ AV Sbjct: 125 DDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIGQYAV 184 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246 L+ Y+E + + + LF SQ+ +MT + +K +G+ + L+PH L Sbjct: 185 QALQRYIELRKG--VGLPTETALFLSQKGNRMTTDQIRYVMKRLRKDSGV-HKPLTPHSL 241 Query: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 RH+FAT LL GADLR VQ LLGH LSTT YTHV+TERLR ++Q HPR Sbjct: 242 RHSFATDLLERGADLRAVQELLGHESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 114/300 (38%), Positives = 172/300 (57%), Gaps = 9/300 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLA 60 L +++ +LD L + + +T AYRRDL + L A + ++A + Sbjct: 3 PDSLEQLDDYLDRLA--RRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYVG 60 Query: 61 ERLEGG-YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 R G A S RLL+A+R F L +++ + +P+ + P+ +RLP+ L V Sbjct: 61 TRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAVA 120 Query: 120 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI-GKGNKERL 178 LL AP D LE RD+AM E+ Y++GLR+SELVGL + D+ G V V GKG K R Sbjct: 121 GLLDAP-ADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARY 179 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 VP+G +A+ + +LE R +L G LF S++ +++ +T R++ + G+ S Sbjct: 180 VPVGAKALEAIGAWLEARR--VLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGL-S 236 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 E++ PH+LRH+FA+H+L DLR VQ LLGH+ L+TTQIYTHV +RL ++ Q HPRA Sbjct: 237 ERVHPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRA 296 >UniRef50_C7NGY7 Site-specific recombinase XerD n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGY7_KYTSD Length = 336 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 116/328 (35%), Positives = 169/328 (51%), Gaps = 38/328 (11%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGG 66 +E F D L LE+ + +T+ AY DL+ + E L G T DL++ A R G Sbjct: 10 VEGFADHLLLERGRSPHTVRAYTADLTALAEHLEAAGATEWRQVTLSDLRSFAARRAAAG 69 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ--- 123 ++ AR ++ R F ++ + DPSA L SP++ +RLP L Q +L++ Sbjct: 70 LARSTLARGTASQRTFFGWMVATERLVVDPSARLVSPRVEKRLPAVLRAEQAAQLVEGGG 129 Query: 124 ---------------------------------APLIDQPLELRDKAMLEVLYATGLRVS 150 A + +LRD+A+LE+LYATG+RV Sbjct: 130 TRPEPRATGGAGDPGGDTQTDTDTDTDAAPGTEADPVSLATDLRDRAVLELLYATGIRVG 189 Query: 151 ELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLF 210 ELV L +SL+ VRV GKG+KER+VP G A+ LE ++ GRP LL S + LF Sbjct: 190 ELVSLDTGAVSLQDHTVRVWGKGSKERVVPFGVPALRALEEWVHQGRPELLGARSGEALF 249 Query: 211 PSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGH 270 R ++ + + A + + PH LRH+ ATH+++ GAD+R VQ LLGH Sbjct: 250 LGVRGGRIDPREVRRVVHRAAQRVE-GAADIGPHGLRHSAATHMVDAGADIRSVQELLGH 308 Query: 271 SDLSTTQIYTHVATERLRQLHQQHHPRA 298 + L+TTQ+YTHV+ ERLR+ + HPRA Sbjct: 309 ASLATTQVYTHVSVERLREAFDRSHPRA 336 >UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S88_SHEDO Length = 321 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 158/314 (50%), Gaps = 25/314 (7%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLH---------------------HRG 44 + +F L E+ L+ T+ Y +L +L Sbjct: 5 SLFARFERYLTSERQLSPYTVRNYLFELRRAEPYLFTTLSLPEYAAQTSQTNAITSPQTD 64 Query: 45 LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK 104 + LQALLA+ G S + LSA+++ F+YL E +P+ L++PK Sbjct: 65 EQWLALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPK 124 Query: 105 LPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQ 164 + LPK++ + LL A D PL +RD+A++E+ Y++GLR+ EL L DI L Sbjct: 125 QAKPLPKNIDVDAISHLL-AIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGL 183 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFW 224 V+V+GKG KER VP+G+ A+ L + LL LF S + ++++ ++ Sbjct: 184 QEVKVLGKGGKERRVPVGKLAMEALALWHTQR--LLLVQADEPALFVSNQGKRLSHRSIQ 241 Query: 225 HRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284 R+ + + S + PH LRH+FATH+L DLR VQ LLGH++LSTTQIYT + Sbjct: 242 ARMAKWGQNQAL-SVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTSLDF 300 Query: 285 ERLRQLHQQHHPRA 298 + L +++ HPRA Sbjct: 301 QHLAKVYDGAHPRA 314 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 115/293 (39%), Positives = 160/293 (54%), Gaps = 6/293 (2%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEG 65 ++ F + L + + +T AY DL +L GL+L +D+ A Sbjct: 7 DLLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAH--RE 64 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 S +R+LSA+R ++L R DP L P+LP+ LP L E ++ RLL+AP Sbjct: 65 DLAMRSRSRVLSAIRSWSRFLKRRGLPAIDP-DTLPVPRLPRNLPGVLDEEEILRLLEAP 123 Query: 126 LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 +RD+A+L YA+GLRVSEL LT+ ++L + +RV GKG KER+ L + Sbjct: 124 DPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDGLS 183 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 L+ YLE RP LF ++R TRQ W IK YA GID +SPH Sbjct: 184 CARLKLYLERVRPSTNTAEKT--LFLTRRQTGFTRQGLWLLIKGYARQCGID-RSVSPHT 240 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL+HG D+R +Q+LLGHSD+ TT+IYTHV L + ++HPR Sbjct: 241 LRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRG 293 >UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510416 Length = 319 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 165/314 (52%), Gaps = 24/314 (7%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG----------LTLATAQSDDL 55 + + D L ++++ +T AY D+S + H L ++ +DL Sbjct: 9 EVVSGYADHLRS-RDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDIDLNDL 67 Query: 56 QALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSE 115 ++ L + G ++ AR ++AV+ F Y + ++P+A L +PK RLP L Sbjct: 68 RSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPTVLKP 127 Query: 116 AQVERLL-----------QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQ 164 Q L+ + I+ +RD A+LE+LYAT +RVSEL GL D+ ++ Sbjct: 128 QQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDVDHQR 187 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFW 224 ++ V+GKGNKER VP G+ A L+ +L R + S D LF R ++ + Sbjct: 188 SMITVLGKGNKERRVPYGKPAQTALQKWLSL-RDTFASESSGDALFLGVRGGRIGARQVR 246 Query: 225 HRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284 + Y A + + PH LRH+ ATH+L+ GADLR +Q LLGHS +S+TQIYTHV+ Sbjct: 247 ELVHRYG-AADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSM 305 Query: 285 ERLRQLHQQHHPRA 298 +RL++ ++Q HPRA Sbjct: 306 QRLQETYRQAHPRA 319 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 107/302 (35%), Positives = 160/302 (52%), Gaps = 16/302 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLT-LATAQSDDLQALLAERLEGGY 67 + +L + AE T+ +Y DL V+++ + + +Q L + Y Sbjct: 8 QDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYLRQDHY 67 Query: 68 -----------KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEA 116 + S +++++ +YL + +P ++ + K Q LP + Sbjct: 68 DEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPVYFNMQ 127 Query: 117 QVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 +ERLL + D E+ DKA++E+LY GLRVSE L + + L QG +RVIGKGNKE Sbjct: 128 DIERLLDSF-RDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGKGNKE 186 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 R+VP+ LE YL R + +F + + Q++TRQ IK + G+ Sbjct: 187 RMVPMHARCKKALENYLTKVRKQ--RYARSNFVFINAKGQEITRQYIHVMIKKRLLALGL 244 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 D E+LS H RH+FA+HLL+ GADLRVVQ LLGHSD+STTQIYTHV +RL+ ++ HP Sbjct: 245 D-ERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHP 303 Query: 297 RA 298 RA Sbjct: 304 RA 305 >UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHC9_ACHLI Length = 306 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 100/299 (33%), Positives = 165/299 (55%), Gaps = 7/299 (2%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--TLATAQSDDL-QALLAE 61 + I + D L +EKN +E+T +Y D+ ++L GL L A+ L + ++ Sbjct: 1 MDIISDYKDYLIIEKNFSEHTAISYINDVKGFEDFLIKEGLAKDLLGARRPRLARNYISY 60 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 +K + AR LS+++ + YL ++ E++ + + +PK+ + LP + E + L Sbjct: 61 LDNQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIIDEEAINYL 120 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + +PL R+ +L++LY+ G+R SEL+ L + DI L G + + GKG K+R + L Sbjct: 121 FDSIDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIHGKGKKDRYIIL 180 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSI---DVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 E+ + + YL R LL+ LF + + +T + + +G ++ Sbjct: 181 HEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSG-ET 239 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 + PH+LRHAFAT +LNHGADLRVVQ LLGH L +TQIYTHV+ E+L++ + Q HPR Sbjct: 240 YAIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPR 298 >UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Proteobacteria RepID=Q1LSD3_RALME Length = 369 Score = 331 bits (849), Expect = 3e-89, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 162/309 (52%), Gaps = 18/309 (5%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLE 64 + ++LD L + LA +TL +Y DLS++ G+ L ++ +++ A Sbjct: 30 LVVRYLDWLATSRKLAAHTLTSYGHDLSVLQSQAIRLAPGVALLALETRHIRSFAARLHG 89 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKF-REDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 G A + AR LSA R + + R + +P + +PK + LPK LS L+ Sbjct: 90 NGLSARTIARTLSAWRGFYLWAARHGHGVQSNPVDGVRAPKRGRPLPKALSVEHAVALVA 149 Query: 124 APLIDQPLELRDKAMLEVLYATGLRVSELVGLTM---SD--------ISLRQGVVRVIGK 172 D LRD+A+ E+ Y++GLR+SEL+ L + D + L V V+GK Sbjct: 150 HRQDDTNESLRDQAVFELFYSSGLRLSELIQLDVRYTEDGDYRSSGWLDLDGAEVTVLGK 209 Query: 173 GNKERLVPLGEEAVYWLETYLEHGRPWLLNG---VSIDVLFPSQRAQQMTRQTFWHRIKH 229 G++ R VP+G +A+ L+ ++ L G LF R +++ T RIK Sbjct: 210 GSRRRTVPVGSKAIQALKAWIHVREMMLRPGALPEDAHALFLGTRGRRLPISTVQQRIKR 269 Query: 230 YAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQ 289 A+ AG+ S+ + PH+LRH+FATH+L DLR VQ +LGH+ +STTQIYT + + L + Sbjct: 270 QALAAGVPSD-VHPHMLRHSFATHMLQSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAK 328 Query: 290 LHQQHHPRA 298 ++ Q HPRA Sbjct: 329 VYDQAHPRA 337 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 117/304 (38%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 + I QFL+ L E+ L++N++ +Y+RDL +L + L+ +D+++ + E Sbjct: 1 MEFISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAE 60 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 +A S R +S ++ +++L E +P ++ PK +LP+ LS ++ LL+ Sbjct: 61 NSLQARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEY 120 Query: 125 PLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDI--SLRQGVVR----VIGKGNKER 177 D P R AM+ +LYA+GLRVSELV L +SDI + V+ V+GKGNKER Sbjct: 121 CSQDISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKER 180 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSID--VLFPS-QRAQQMTRQTFWHRIKHYAVLA 234 ++ + E A+ L YL ++ + LFPS A MTRQ F +K A+ A Sbjct: 181 IIVINEPAINSLVKYLVVRDNFVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYA 240 Query: 235 GIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQH 294 G++ E +SPHVLRH+FA+HLL GADLRV+Q LLGH+D+STTQIYTH+ T L++ H Sbjct: 241 GLNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTHLQTNHLKKALL-H 299 Query: 295 HPRA 298 HP + Sbjct: 300 HPLS 303 >UniRef50_A2U0K2 Phage integrase family protein n=3 Tax=Flavobacteria RepID=A2U0K2_9FLAO Length = 315 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 87/294 (29%), Positives = 166/294 (56%), Gaps = 6/294 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLE 64 I+ FLD L EKN +++T+ AY++DL+ ++ L +++ + +E Sbjct: 22 LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 + R +S+++ +++L + + + +P + K+ +++ S+ +V +L++ Sbjct: 82 EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 + + +R+K M+E+ Y+TG+R +EL+ + + DI+ V++V+GK NKERLVP+ Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 + L YL H + + + LF +++ ++ + I Y +K PH Sbjct: 202 VLKTLNLYLGHRKNI---SNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSKVKKS-PH 257 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LRH+FATHLLN GADL V+ LLGHS L++TQ+YTH + + ++Q++ Q HP++ Sbjct: 258 MLRHSFATHLLNEGADLNSVKELLGHSSLASTQVYTHNSLDAIKQVYNQAHPKS 311 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 12/299 (4%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLA 60 A + +L+ + E +E+T+ AYRRDL + L G D A L Sbjct: 8 AHFDAYLENIVRE-GKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDFTAALR 66 Query: 61 ERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 + G A + AR LS+ R+ +L DP+A + PK P+R+PK L + + R Sbjct: 67 RLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLNR 126 Query: 121 LLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L P PL +RD A+ E++Y +GLRVSE+ GL D+ L + V V GKG K+R V Sbjct: 127 MLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQV 186 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 PL ++V L+ YL P LF + +++++ R+ +A G D Sbjct: 187 PLTGKSVEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNG-DGR 241 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPH++RH++A HLL D+R VQ LLGHS LSTTQIYT + + + +L+ + HPRA Sbjct: 242 HVSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRA 300 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 158/312 (50%), Gaps = 24/312 (7%) Query: 6 ARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-----------TLATAQSDD 54 + FLD L E+ + T+ YR+ WL GL D Sbjct: 23 EWLTPFLDYLARERRYSVYTVRNYRQAFEDFYRWLVSSGLRDAANESAASLAPDKLTPRD 82 Query: 55 LQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLS 114 L+ + E + + + +S +R ++Y R +P LA PKL +RLPK L+ Sbjct: 83 LRDFVIE-GQRRFDRRTLHNHVSGLRSFYKYWLRHGRVSRNPLVGLALPKLEKRLPKFLT 141 Query: 115 EAQVERLLQAP--------LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGV 166 E Q++ LL P I RD+ +E+LY GLRVSEL L I GV Sbjct: 142 EQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLRVSELTALDYGQIDFTSGV 201 Query: 167 VRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHR 226 RV+GKG KERL PLG+ A+ L + + + + + ++M + Sbjct: 202 ARVLGKGRKERLCPLGKVALAVLVKW---KNEYARDTSPAAPVLVTPEHERMPVRQVQLM 258 Query: 227 IKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATER 286 +K Y LAG+ ++ LSPH LRH++ATHLLN GADLR+VQ LLGH+ L+TTQIYTHV+ R Sbjct: 259 LKRYLALAGLPTD-LSPHKLRHSYATHLLNAGADLRLVQELLGHASLNTTQIYTHVSIAR 317 Query: 287 LRQLHQQHHPRA 298 LR ++ + HPRA Sbjct: 318 LRDIYDKAHPRA 329 >UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia RepID=Q2GEQ3_NEOSM Length = 305 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 13/301 (4%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 D +EQFL+ + +E+N NT+++YR DL ++ +L RG L A ++L +A Sbjct: 4 SDCKYVEQFLEKILVERNATLNTISSYRTDLRLLSTFLKKRG--LKDASKENLYEYIANL 61 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 + R ++ R+ F +LY EK +P+ L PK LP+ L++ +V LL Sbjct: 62 RAQQLSNATIRRKIATFRQFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLL 121 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISL---RQGVVRVIGKGNKERLV 179 QP LR A+LE+LY++G+RVSEL+ + +SDI Q + ++GKG KER++ Sbjct: 122 TFLEAGQPATLRLYAILEILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGRKERIL 181 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPS--QRAQQMTRQTFWHRIKHYAVLAGID 237 P ++A+ L+ YL + LFP ++ + M+RQ +K A+ ID Sbjct: 182 PFSKKAIQVLKLYLTSY------QSNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKID 235 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 +++SPHV+RH+FATHLL++G D++VVQ LLGH+ ++TTQIYTH++ +L + + HP Sbjct: 236 PKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHPL 295 Query: 298 A 298 + Sbjct: 296 S 296 >UniRef50_A6LE90 Tyrosine type site-specific recombinase n=8 Tax=Bacteroidales RepID=A6LE90_PARD8 Length = 302 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 86/296 (29%), Positives = 155/296 (52%), Gaps = 8/296 (2%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG---LTLATAQSDDLQALLAERL 63 I+ FL+ L E+N + T+ AY +DL ++ SD +++ + + Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61 Query: 64 EGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQ 123 + S R LS+++ F++L + +P ++ PK + LP + ++++E LL Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 124 AP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182 + +R++ ++E+LY TG+R SEL+G+ D+ V+V GK NK+RL+P Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 183 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLS 242 E + Y E + + + F + Q++ ++ +K + +++ S Sbjct: 182 EGLKNLMLAYTEVRDREV--EAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKR-S 238 Query: 243 PHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+FAT +LN+GA+L V+ LLGHS L++T +YTH E L++++ HPRA Sbjct: 239 PHVLRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTHTTFEELKKVY-HAHPRA 293 >UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IL8_THICR Length = 317 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 172/314 (54%), Gaps = 29/314 (9%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEW---------LHHRGL-------------T 46 ++F+ L LE N +E+T++ Y+RDL ++ + L + L Sbjct: 5 QRFIKQLKLE-NKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAWAFLDQFDD 63 Query: 47 LATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLP 106 + LQA +A R++ G A S AR LSA+R + +L + +P+ L +PK P Sbjct: 64 WQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLKAPKQP 123 Query: 107 QRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMS-DIS-LRQ 164 + LPK L +LL+ P + ++RD+A+ E+LY+ GLRVSELV L +S + L Sbjct: 124 KALPKSLDVDLTRQLLEQP-LKTWQDVRDQAIFEILYSGGLRVSELVELDLSPGLDGLAS 182 Query: 165 GVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFW 224 G VRV+GKG KER P+G+ A L +LE + +F ++ +++ ++ Sbjct: 183 GWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDY--AQPGEQAVFVNRFGKRLGVRSIQ 240 Query: 225 HRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAT 284 ++ + AG+ ++ +SPH LRHA ATH+L DLR VQ +LGH++LSTTQIYT + Sbjct: 241 TQLDKRTLQAGLPTK-MSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDL 299 Query: 285 ERLRQLHQQHHPRA 298 + L ++ + HPRA Sbjct: 300 QHLATVYDKAHPRA 313 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 113/300 (37%), Positives = 164/300 (54%), Gaps = 15/300 (5%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLAT---AQSDDLQALLAERLEG 65 E FL L L K + T +AYRRD+S +L GLTL +Q A Sbjct: 8 ETFLSWLNLHKGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASLYYK 67 Query: 66 GYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAP 125 TS AR L+A+R LF+YL + +D+P+ + +PK + P+ L+ QV LL+ Sbjct: 68 KLTRTSIARKLAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLLKGA 127 Query: 126 L---------IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 ++ + R+ A+LE+LY +GLR+SE + L +SDI G VRVIGKGNKE Sbjct: 128 NNILKTSHTGLELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKGNKE 187 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGI 236 RL PL + ++ LE +L ++ + LF R +++ R+ ++ + AG+ Sbjct: 188 RLAPLSDTSIVALEEWLAIR--HMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQAGL 245 Query: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296 PH LRH+FATHLL GA+LR VQ LLGH+ LSTTQ YTH+ ++L Q + + HP Sbjct: 246 PLTTA-PHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHP 304 >UniRef50_A5FIL1 Phage integrase family protein n=4 Tax=Flavobacteriaceae RepID=A5FIL1_FLAJ1 Length = 297 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 161/300 (53%), Gaps = 8/300 (2%) Query: 1 MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHR--GLTLATAQSDDLQAL 58 MK + + F D L EK + +T+NAY DL E+ R ++ +++ Sbjct: 1 MKSNK---QAFQDYLQFEKKYSPHTVNAYLNDLGFFEEFNKERFEQDSIERVNYSQIRSW 57 Query: 59 LAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQV 118 + ++ G S R +++++ +++L + K E P + K P+ + SE +V Sbjct: 58 IVFLVDQGVSNVSVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEV 117 Query: 119 ERLLQAPLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKER 177 L+ E+RDK ++++ Y TG+R +EL+GL + ++ L GVV+V+GK +KER Sbjct: 118 SDLMFGVESPIGFEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKER 177 Query: 178 LVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGID 237 +VPL + Y++ R L V + F S++ +++ + I Y + Sbjct: 178 IVPLLPIVADQINLYIKE-REQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVS-E 235 Query: 238 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297 K SPHVLRH FATHLLN+GADL V+ LLGHS L++TQ+YTH + L++++ + HPR Sbjct: 236 KVKKSPHVLRHTFATHLLNNGADLNSVKELLGHSSLASTQVYTHNSLAELKKVYSEAHPR 295 >UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepID=XERC_CHLT2 Length = 315 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 93/307 (30%), Positives = 163/307 (53%), Gaps = 21/307 (6%) Query: 10 QFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-------------------LTLATA 50 FLD L K + +TL Y DLS + +L + L+ + Sbjct: 7 AFLDYLKNMKASSLHTLRNYCMDLSSLKCFLEKKSDLSPTPPLSLHDNTYDYPPLSFSLF 66 Query: 51 QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 110 D+++ L E+++ + + R LSA++ ++ + + ++P+ + P+LPQ LP Sbjct: 67 TKDNIRLYLLEQIQTHHSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELP 126 Query: 111 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 170 L+ QV L+ AP +D+ RD+ +LE+ Y++GLR+SE+ L +DI + ++ + Sbjct: 127 SPLTYEQVLALMAAPELDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR 186 Query: 171 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 230 GKG KER+VP+ + AV WL+ YL H F ++ ++++ ++ + + Y Sbjct: 187 GKGKKERIVPMTKVAVQWLQDYLNH-PDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQY 245 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 + G+ ++PH +RH ATH L G DL+ +Q+LLGH+ L TT IYTHV+ + +Q+ Sbjct: 246 LLKTGLSG-SITPHTIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304 Query: 291 HQQHHPR 297 H + HP Sbjct: 305 HDETHPH 311 >UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacteraceae RepID=C7JEV7_ACEP3 Length = 306 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 135/299 (45%), Positives = 179/299 (59%), Gaps = 13/299 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67 ++ FL+ L E+ A NTL AY DL+ E L G TL TA ++ LQ +A + G Sbjct: 6 VDLFLEMLAAERAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQ 65 Query: 68 KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127 + AR LS +R+ + +L RE R D+P+AHL SPK LP+ LSE++V LL A Sbjct: 66 ARRTVARRLSCIRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAE 125 Query: 128 -------DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 + + KA LE+LYA+GLR+SEL+ L I+ Q ++ V GKG +ERLVP Sbjct: 126 PAGASLAKKRRGILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVP 185 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAGIDSE 239 L + A + LE + LFP + A+ MTRQ F + A+ A ID Sbjct: 186 LSDSAREAAQALLEV-----DAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPA 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +LSPHVLRH+FATHLL HGADLR +QMLLGH+D++TTQIYTHV TERL++ Q HHP A Sbjct: 241 RLSPHVLRHSFATHLLAHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLA 299 >UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepID=Q2J882_FRASC Length = 443 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 127/322 (39%), Positives = 177/322 (54%), Gaps = 33/322 (10%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 IE++L L E+ LA N++ AYRRDL + L GL +L ++ A G Sbjct: 93 IERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFAAVLRTGD 152 Query: 67 -----YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 A S AR+L AVR L ++ E +D S + P P+RLPK LS QV + Sbjct: 153 DTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSIDQVVAV 212 Query: 122 LQAP-------------------------LIDQPLELRDKAMLEVLYATGLRVSELVGLT 156 L A + LR A+LE+LY TG R+SE VGL Sbjct: 213 LAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARISEAVGLD 272 Query: 157 MSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQ 216 + D+ L VR+ GKG ++R+VPLG A+ + YL GRP L+ S +F S+R Sbjct: 273 VDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVFLSRRGN 332 Query: 217 QMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT 276 +++RQ+ W ++ A+ AG++ +SPHVLRH+FATHLL+ GAD+RVVQ LLGH+ +STT Sbjct: 333 RLSRQSAWSVLRTAALAAGVEG--VSPHVLRHSFATHLLDGGADVRVVQELLGHASVSTT 390 Query: 277 QIYTHVATERLRQLHQQHHPRA 298 QIYT V +RLR+++ HPRA Sbjct: 391 QIYTLVTVDRLREVYAASHPRA 412 >UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga RepID=C7M6X5_CAPOD Length = 307 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 99/299 (33%), Positives = 166/299 (55%), Gaps = 10/299 (3%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL----HHRGLT--LATAQSDDLQALLAE 61 I F+ L +E +++T+ AY+ DL +++ +G L A +D++ + Sbjct: 3 INAFIIYLSIEMKYSDHTVEAYKHDLRSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIH 62 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAH-LASPKLPQRLPKDLSEAQVER 120 + S R LSA++ + +L + K E P + K ++ SEA++E+ Sbjct: 63 LSDETISFRSINRKLSALKTYYNFLKKTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEK 122 Query: 121 LLQAPL-IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 179 +L D E+R++A++E LYATG+R SEL GL +SD+ Q ++V+GKG+KER + Sbjct: 123 VLSFFSSKDSFDEVRNRAVIETLYATGIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYI 182 Query: 180 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSE 239 P+ E L+ YL R + N S D LF + +++ + I Y + + Sbjct: 183 PIIPELENTLKEYL-VLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVV-TTKK 240 Query: 240 KLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +SPHVLRH+FA+HLL++GADL V+ LLGHS L++TQ+YT+ + L++ +++ HPRA Sbjct: 241 DVSPHVLRHSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRA 299 >UniRef50_D2QBI8 Integrase family protein n=2 Tax=Flexibacteraceae RepID=D2QBI8_9SPHI Length = 298 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 4/293 (1%) Query: 9 EQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-HHRGLT-LATAQSDDLQALLAERLEGG 66 + FL + EK L+ +TL AY DL +L + A +++ + +E G Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 +S R ++ +R F +L R K + DP + + + K +RLP+ + E +E LL Sbjct: 65 MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124 Query: 127 -IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEA 185 D LRDK +LE+LY TG+R+SEL GL +D++L + + V+GK NK R+VPL + Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184 Query: 186 VYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 ++ Y L S + +K + L K SPHV Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLGTK-SPHV 243 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLLN GADL ++ LLGHS L+ TQIYTH + ++L++ + Q HP+A Sbjct: 244 LRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTHTSLDQLKKTYDQAHPKA 296 >UniRef50_Q83MV4 Integrase/recombinase n=2 Tax=Tropheryma whipplei RepID=Q83MV4_TROWT Length = 316 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 159/298 (53%), Gaps = 12/298 (4%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL-----HHRGLTLATAQSDDLQALLAE 61 I +F+ L + + +T AY RDL E++ +L DL++ L Sbjct: 25 LIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYS 84 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 + A S R +S+++ F++ Y K + +A L +PK +LP LSE ++ ++ Sbjct: 85 --QSHKSARSIRRAVSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQI 142 Query: 122 LQAPLIDQP-LELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVP 180 L P ++LR+ A+ E+LYA+ +RVSELV L + I VRV GK K+R+V Sbjct: 143 LGNFSHTVPVIQLRNTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVL 202 Query: 181 LGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240 G+ A + L+ YL R LL+ S LF R +++ + + + + Sbjct: 203 FGKPASHALDLYLNM-RHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEM---PKGP 258 Query: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 PHVLRH+ ATH+L++GADLR +Q +LGHS LSTTQIYTHV+ ERL + Q HPRA Sbjct: 259 RGPHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYNQAHPRA 316 >UniRef50_C9M7U3 Integrase/recombinase XerD n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7U3_9BACT Length = 319 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 97/291 (33%), Positives = 149/291 (51%), Gaps = 9/291 (3%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG-LTLATAQSDDLQALLAE 61 I +++D + L +N + T YR DL + +G L+ + ++ + Sbjct: 25 DLETWIGRYIDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFIRG 84 Query: 62 RLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERL 121 G ATS +R LSA+R YL + DP+ + PK P LP+ L++ V RL Sbjct: 85 LSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVNRL 144 Query: 122 LQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPL 181 + A +P R++ +LE+ Y+ GLRV+ELV L SD+ + + V+GKG+KER+VP Sbjct: 145 ISAAGTIEP-AARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVPY 203 Query: 182 GEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKL 241 G+ A L + P +FP + + +T +T ++ + LAG Sbjct: 204 GQWAASALAEWKAQCPP-----SEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPG--A 256 Query: 242 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQ 292 SPH LRH FATH+L GA ++ VQ LLGH L TTQ Y ++ ERLR+ + Sbjct: 257 SPHTLRHCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYD 307 >UniRef50_C9LEJ3 Integrase/recombinase XerC n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LEJ3_9BACT Length = 299 Score = 326 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 151/300 (50%), Gaps = 6/300 (2%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWL--HHRGLTLATAQSDDLQALL 59 +++ A ++FL L +K + T+ YR L + LT T +D ++ + Sbjct: 3 QENKALTQRFLSYLASDKGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWI 62 Query: 60 AERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVE 119 R++ G + R LSA+R ++YL E DP + +PK Q LP + +++++ Sbjct: 63 VWRMDDGIVGRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMD 122 Query: 120 RLLQAP-LIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERL 178 RL + RD +L Y+TG+R +EL+ + DI L + VRV GK NK+R+ Sbjct: 123 RLFDKTHFPETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRI 182 Query: 179 VPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDS 238 +P G E + Y L LF + + + Y L + Sbjct: 183 IPFGAELAEAFQAYYAAR--MDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLV-TNI 239 Query: 239 EKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 +K SPHVLRH+FAT +LN+GADL V+ LLGHS+L+TT IYTHV E L + ++ HPRA Sbjct: 240 KKRSPHVLRHSFATAMLNNGADLMAVKELLGHSNLNTTAIYTHVTPEELLKEYKHAHPRA 299 >UniRef50_Q8RAB1 Tyrosine recombinase xerD-like protein n=10 Tax=Thermoanaerobacteraceae RepID=XERDL_THETN Length = 290 Score = 326 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 96/302 (31%), Positives = 167/302 (55%), Gaps = 22/302 (7%) Query: 5 LARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLE 64 + + +FL+ L K L++NTL +Y RD+ + +++ G+ +A+ + L + Sbjct: 3 ESVVGEFLEFLKKNKRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQ 62 Query: 65 GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQA 124 G + +R LS+++ + YL+ +K E+DPS + +PK+ ++ P L+ QV+ LL Sbjct: 63 QGKSQATISRALSSIKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSF 122 Query: 125 PLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 LRDKA++E++YA+GL+VSE++ L + D++L G + V KER++P+G Sbjct: 123 DFGKDEKGLRDKALIELMYASGLKVSEVISLKIEDVNLASGYIVVR--SGKERVIPIGSY 180 Query: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 AV L+ Y+E GR LF + R +++TRQ W IK YA L+P+ Sbjct: 181 AVAALQEYIEKGR---KPRKGEKALFLNLRGKRLTRQGCWKIIKEYADKIS-PGLPLTPN 236 Query: 245 VLRHAFATHLLNHGADLRVVQMLLGHS--------DLSTTQIYTHVATERLRQLHQQHHP 296 +LR +FA H+L +GADL+ VQ +LG+ L V+ ++++++ + HP Sbjct: 237 ILRKSFAQHMLQNGADLKTVQEMLGYEVNFGNNLLSL--------VSRSKMKEVYNKFHP 288 Query: 297 RA 298 RA Sbjct: 289 RA 290 >UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAZ0_SORC5 Length = 358 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 110/337 (32%), Positives = 159/337 (47%), Gaps = 47/337 (13%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL--------------------- 45 I +FL L E+ + +T+ AYRRDL + + + Sbjct: 18 AIARFLTYLAAERRASRHTVAAYRRDLEQLARFAREKAAANADHRPARARGKAPATGKTP 77 Query: 46 ------------TLATAQSDD------LQALLAERLEGGYKATSSARLLSAVRRLFQYLY 87 + A + D L++ L + S AR + A R L +YL Sbjct: 78 ATGKAPATGEAPSPDEATAVDGLDVLLLRSWLGSLA-RTHAPASIARKVGAARALLRYLE 136 Query: 88 REKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGL 147 R + + +A LA PK+ + LP L +++ P + LRD+AMLE LY GL Sbjct: 137 RRGEVDKNAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGLRDRAMLETLYGAGL 196 Query: 148 RVSELVGLTMSDISL---RQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPW---LL 201 RVSEL GL ++ + + VRV+GKG+KER+VPLG A+ +E YLE Sbjct: 197 RVSELCGLDLTHVDRRPADRAAVRVVGKGDKERIVPLGSHALAAIERYLERRDELADPTT 256 Query: 202 NGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADL 261 LF S+R ++ + ++ Y L G L PH LRH ATHLL+ GADL Sbjct: 257 GARDPRALFLSRRGARIGVRRVQALVQRYGAL-GAGRADLHPHALRHTCATHLLDGGADL 315 Query: 262 RVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 R +Q LLGH+ L+TTQ YTHV+ + L +++ HP A Sbjct: 316 RAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMA 352 >UniRef50_C0QXF7 Tyrosine recombinase XerD n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QXF7_BRAHW Length = 309 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 155/293 (52%), Gaps = 3/293 (1%) Query: 7 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGG 66 +E+F D L N A +T+N+Y +DL ++LH++ + L A ++ L E Sbjct: 17 LLEEFSDYLQTL-NFAAHTINSYNKDLKEYFQFLHNKNIPLDEANHYTVRDYLTFLKEKS 75 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 ++ +R LS++++ ++YL R + + + + SPK + + K LS ++ +L Sbjct: 76 LTNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFLSIDDIDNILAIDD 135 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 +RDK M +YA GLRVSEL L +S I +R+ GKG+K R +P+ Sbjct: 136 GGDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRICGKGSKVRDIPILPIIY 195 Query: 187 YWLETYLEHGRPWLLN-GVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 + Y+E R + D +F ++ + ++ ++ +K A I + SPH Sbjct: 196 ENWDVYMEKRRIIQREYSENNDYIFINRFGKPISDRSIRTSMKRLIRNANISID-FSPHT 254 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH FATHLLN+ A++R VQ LLGH ++TTQ YTHV RL +++ + HP + Sbjct: 255 LRHTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSRLFEVYNKFHPHS 307 >UniRef50_C8PV23 Tyrosine recombinase XerC n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PV23_9GAMM Length = 345 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 169/303 (55%), Gaps = 10/303 (3%) Query: 2 KQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAE 61 D A + ++L L K + T+ +YR+ L + + + + L L L Sbjct: 45 TDDQALVNRWLAELS-NKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIR 103 Query: 62 RLE-GGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVER 120 RL+ +SS L+ +R+L+++L ++ +P+ + + P+ LP L + + Sbjct: 104 RLDVDKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTIRLKRAPRPLPTLLDIDVLSQ 163 Query: 121 LLQAPLIDQ----PLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKE 176 LL + L +RDKAMLE+LY +GLRV ELVGL MSDI Q ++RV+GKG K Sbjct: 164 LLDQAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKT 223 Query: 177 RLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQR-AQQMTRQTFWHRIKHYAVLAG 235 R+VP+GE+A L YL H L +F S+R +++ +T RIK A AG Sbjct: 224 RIVPIGEKAWQALINYLPHR--SLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAG 281 Query: 236 IDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHH 295 + ++ L PH+LRH FA+H+L+ DLR VQ LLGHSD+STTQIYTH+ L Q++ + H Sbjct: 282 V-AQDLYPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTHLDFGHLSQVYDKAH 340 Query: 296 PRA 298 PR+ Sbjct: 341 PRS 343 >UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae RepID=D1B6D4_THEAS Length = 292 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 103/293 (35%), Positives = 150/293 (51%), Gaps = 13/293 (4%) Query: 8 IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGL-TLATAQSDDLQALLAERLEGG 66 I+ FL+ L +E+T+ Y DL E+L + + D ++ L + G Sbjct: 2 IDSFLEYLKSL-GRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYG 60 Query: 67 YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126 + S+ R +S++R YL E DPS + P+ LP+ +S V RLL+ Sbjct: 61 FAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEE-G 119 Query: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186 RD+ ++E+LY +GLRVSEL L D+ + + +RV+GKG+K R+VP G Sbjct: 120 PSGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQ 179 Query: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRA-QQMTRQTFWHRIKHYAVLAGIDSEKLSPHV 245 L + E LFP +R +++T++T + A G+ +SPH Sbjct: 180 DMLRRWGEMV-------GRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFG--VSPHT 230 Query: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298 LRH+FATHLL GA LRVVQ L+GH L TTQ Y V ER+R +Q HHPRA Sbjct: 231 LRHSFATHLLEGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQVHHPRA 283 >UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadaceae RepID=Q0C629_HYPNA Length = 309 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 178/308 (57%), Gaps = 19/308 (6%) Query: 3 QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62 D +RI FL+ + E+ + NTL+AY RDL E+ L L TA S DL A LA+ Sbjct: 2 DDRSRIGAFLEMMSAERGASPNTLDAYGRDLLDASEFC---HLRLVTASSSDLSAWLADL 58 Query: 63 LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122 G ++ AR LSAVRR F++L++E R+DDP+A L P + +P LS +V RL+ Sbjct: 59 AARGMAPSTQARKLSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLI 118 Query: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI------SLRQGVVRVIGKGNKE 176 +A D+ R K ++E+LY GLR +ELV L + ++ + + GKG K+ Sbjct: 119 EACGNDK----RLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKD 174 Query: 177 RLVPLGEEAVYWLETYLEHGR-----PWLLNGVSIDVLFPSQ-RAQQMTRQTFWHRIKHY 230 RL PLG A+ L +LE L+ +FPS+ + +TR+ ++ Sbjct: 175 RLCPLGRAALIALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDL 234 Query: 231 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQL 290 A AG+ SE++ PH LRHA+ATHLL GADLRVVQ LLGH+D++TTQIYTHV T+ L +L Sbjct: 235 AGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAEL 294 Query: 291 HQQHHPRA 298 + HP A Sbjct: 295 LETAHPMA 302 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.198 0.712 Lambda K H 0.267 0.0606 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,678,327,296 Number of Sequences: 3077464 Number of extensions: 160928431 Number of successful extensions: 445334 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7389 Number of HSP's successfully gapped in prelim test: 6098 Number of HSP's that attempted gapping in prelim test: 406342 Number of HSP's gapped (non-prelim): 17083 length of query: 298 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 170 effective length of database: 646,480,964 effective search space: 109901763880 effective search space used: 109901763880 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 94 (40.3 bits)