BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (71 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P65640 Protein bdm homolog n=85 Tax=cellular organisms ...   146   2e-34
UniRef50_D2TJA4 Protein Bdm (Biofilm-dependent modulation protei...   127   1e-28

>UniRef50_P65640 Protein bdm homolog n=85 Tax=cellular organisms RepID=BDM_ECO57
          Length = 71

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 1  MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTI 60
          MFTYYQAENSTAEPALVNAIEQGLRA+HGVVTEDDILMELTKWVEASDNDILSDIYQQTI
Sbjct: 1  MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTI 60

Query: 61 NYVVSGQHPTL 71
          NYVVSGQHPTL
Sbjct: 61 NYVVSGQHPTL 71


>UniRef50_D2TJA4 Protein Bdm (Biofilm-dependent modulation protein) n=2
          Tax=Enterobacteriaceae RepID=D2TJA4_CITRO
          Length = 71

 Score =  127 bits (319), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/71 (84%), Positives = 65/71 (91%)

Query: 1  MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTI 60
          MFTYY A  STA+PALV+AIEQGLRA+ G VTEDDILMELTKWVEA+DNDILSDIYQQTI
Sbjct: 1  MFTYYSANTSTAQPALVHAIEQGLRAERGAVTEDDILMELTKWVEATDNDILSDIYQQTI 60

Query: 61 NYVVSGQHPTL 71
          NYVVSGQH +L
Sbjct: 61 NYVVSGQHASL 71


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P65640 Protein bdm homolog n=85 Tax=cellular organisms ...   130   2e-29
UniRef50_D2TJA4 Protein Bdm (Biofilm-dependent modulation protei...   124   7e-28

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P65640 Protein bdm homolog n=85 Tax=cellular organisms RepID=BDM_ECO57
          Length = 71

 Score =  130 bits (326), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/71 (98%), Positives = 71/71 (100%)

Query: 1  MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTI 60
          MFTYYQAENSTAEPALVNAIEQGLRA+HGVVTEDDILMELTKWVEASDNDILSDIYQQTI
Sbjct: 1  MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWVEASDNDILSDIYQQTI 60

Query: 61 NYVVSGQHPTL 71
          NYVVSGQHPTL
Sbjct: 61 NYVVSGQHPTL 71


>UniRef50_D2TJA4 Protein Bdm (Biofilm-dependent modulation protein) n=2
          Tax=Enterobacteriaceae RepID=D2TJA4_CITRO
          Length = 71

 Score =  124 bits (312), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 60/71 (84%), Positives = 65/71 (91%)

Query: 1  MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWVEASDNDILSDIYQQTI 60
          MFTYY A  STA+PALV+AIEQGLRA+ G VTEDDILMELTKWVEA+DNDILSDIYQQTI
Sbjct: 1  MFTYYSANTSTAQPALVHAIEQGLRAERGAVTEDDILMELTKWVEATDNDILSDIYQQTI 60

Query: 61 NYVVSGQHPTL 71
          NYVVSGQH +L
Sbjct: 61 NYVVSGQHASL 71


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.311    0.136    0.385 

Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,613,575
Number of Sequences: 3077464
Number of extensions: 7918741
Number of successful extensions: 16823
Number of sequences better than 1.0e-01: 2
Number of HSP's better than  0.1 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16819
Number of HSP's gapped (non-prelim): 4
length of query: 71
length of database: 1,040,396,356
effective HSP length: 43
effective length of query: 28
effective length of database: 908,065,404
effective search space: 25425831312
effective search space used: 25425831312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 87 (38.1 bits)