| Secondary structure and disorder prediction |   |
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| Sequence |   |
M | S | T | D | L | K | F | S | L | V | T | T | I | I | V | L | G | L | I | V | A | V | G | L | T | A | A | L | H |
| Secondary structure |   |
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| Disorder |   |
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| Disorder confidence |   |
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| Confidence Key |
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| ? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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| 1 |
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PDB 3nfi chain B
Region: 1 - 20 Aligned: 20 Modelled: 20 Confidence: 18.7% Identity: 5% PDB header:dna binding protein, transcription Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa49;
PDBTitle: crystal structure of tandem winged helix domain of rna polymerase i2 subunit a49
Phyre2
| 2 |
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PDB 2l27 chain B
Region: 1 - 16 Aligned: 16 Modelled: 16 Confidence: 10.8% Identity: 31% PDB header:membrane protein, peptide binding protei Chain: B: PDB Molecule:peptide agonist;
PDBTitle: nmr structure of the ecd1 of crf-r1 in complex with a peptide agonist
Phyre2
| 3 |
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PDB 1q90 chain G
Region: 14 - 19 Aligned: 6 Modelled: 6 Confidence: 8.4% Identity: 83% PDB header:photosynthesis Chain: G: PDB Molecule:cytochrome b6f complex subunit petg;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
Phyre2
| 4 |
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PDB 1q90 chain G
Region: 14 - 19 Aligned: 6 Modelled: 6 Confidence: 8.4% Identity: 83% Fold: Single transmembrane helix Superfamily: PetG subunit of the cytochrome b6f complex Family: PetG subunit of the cytochrome b6f complex
Phyre2
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| Detailed template information |   |
| Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
| Transmembrane helix prediction |   |
Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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| If you use the binding site
predictions from 3DLigandSite, please also cite: |
| 3DLigandSite: predicting ligand-binding sites using similar structures. |
| Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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