71 d2hoxa1 Probab=100.00  E-value=2.7e-42  Score=296.37  Aligned_columns=383  Identities=15%

Q ss_pred             HHHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             99999998476299876873387887443575444554543335732024565432015653257679878543898999
Q batch____        44 SHAYQLLESQGYIIARPQSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRDPSVVPFASAFPDPRLFPLQQL  123 (468)
Q Consensus        44 ~~Ay~~L~~~G~i~~~~g~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~p~~~~~~~~~~  123 (468)
                      .+|++++++   |.+...||+.+.-..-...........+..-...      ..........++++.|.|  ..++.--.
T Consensus         6 ~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gp------~~~~~~~~~~~~~~~gdp--~~~~~~~~   74 (425)
T d2hoxa1           6 MKAAEEAEA---VANINCSEHGRAFLDGIISEGSPKCECNTCYTGP------DCSEKIQGCSADVASGDG--LFLEEYWK   74 (425)
T ss_dssp             HHHHHHHHH---HHTSCCGGGEECCTTSCEETTEECCEECTTEEST------TSCEECTTCCEECCSCCC--GGGHHHHT
T ss_pred             HHHHHHHHC---EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCC--CCCHHHHH
T ss_conf             888742210---2532026732432022112676500246755587------520013655434667885--54636641


Q ss_pred             HHHHHHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCCCE-----
Q ss_conf             999999743211111014----5758876676653445664085134432-100488058999999985186889-----
Q batch____       124 NRSLAQVSKTATAMSVIE----NLPPGNAELRQAIARRYALQGITISPDE-IVITAGALEALNLSLQAVTEPGDW-----  193 (468)
Q Consensus       124 ~~~~~~~~~~~~~~~~~y----~~~~G~~~lr~a~~~~l~~~g~~~~~~~-i~it~G~~~al~~~~~~l~~~gd~-----  193 (468)
                      ......+..........|    ....+..+|++.|++.+...|..+.+++ |++|+|++++|.+++.+|++|||.     
T Consensus        75 ~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~  154 (425)
T d2hoxa1          75 QHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAP  154 (425)
T ss_dssp             TSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             14210001124555456545664344528999999999885088678877699946889999999998648886123567


Q ss_pred             ---EEEECCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             ---99808974889999986191899975206678471158873145698199996618889866689899999998866
Q batch____       194 ---VIVENPCFYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVKACWLMTNSQNPLGFTLTPQKKAQLVALLN  270 (468)
Q Consensus       194 ---Vlv~~P~y~~~~~~~~~~g~~~~~v~~d~~~g~~~~~~~~~~~~~~~~~i~~~p~~~NPtG~~~s~~~~~~l~~~a~  270 (468)
                         |++..|+|..+..+++..|.....++.|.+.        ........+.+++++|||||||.+++          |.
T Consensus       155 p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~~~~~~i~~P~NPtG~v~~----------a~  216 (425)
T d2hoxa1         155 ESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAAN--------YVNVSNPEQYIEMVTSPNNPEGLLRH----------AV  216 (425)
T ss_dssp             CEEEEECSSCCHHHHHHHHHSCCTTEEEEEEGGG--------GTTCSCGGGEEEEEESSCTTTCCCCC----------CS
T ss_pred             CCEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHH--------HHHHCCCCCEEEEECCCCCCCCEEEE----------EE
T ss_conf             7435730023778999998559974442479889--------99724888579998178888560654----------23


Q ss_pred             HCCCEEEEEECCCCCCCCCCCCCCHHHCCCCCCEEEEECCCCCCC-CCCCCCEEECC--HHHHHHHHHHHCCCCCCCHHH
Q ss_conf             539889998053211268888673010035787699703532132-11353233078--379998632201567767368
Q batch____       271 QYNVTLIEDDVYSELYFGREKPLPAKAWDRHDGVLHCSSFSKCLV-PGFRIGWVAAG--KHARKIQRLQLMSTLSTSSPM  347 (468)
Q Consensus       271 ~~~~~ii~Dd~y~~l~~~~~~~~~~~~~~~~~~vi~~~s~sk~~~-~~~r~g~~~~~--~~~~~~~~~~~~~~~~~~~~~  347 (468)
                      +|++++|+||+|.++.|...+...       +++|++.|+||.++ +|+|+||++.+  .....+.+.......+++.+.
T Consensus       217 ~~~~~~i~De~y~~~~~~~~~~~~-------~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~  289 (425)
T d2hoxa1         217 IKGCKSIYDMVYYWPHYTPIKYKA-------DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRET  289 (425)
T ss_dssp             STTCEEEEECTTCSTTTSCCCSCB-------CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred             ECCCEEEEECCCCCCCCCCCCCCC-------CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHH
T ss_conf             239689971432343323333456-------8549998155101233231018996898999999986410577736899


Q ss_pred             HHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCCCEEECCCCCEEEEEECC
Q ss_conf             9999999959---------7868999999999999999999999973------------469909953687218999889
Q batch____       348 QLALVDYLST---------RRYDAHLRRLRRQLAERKQRAWQALLRY------------LPAEVKIHHNDSGYFLWLELP  406 (468)
Q Consensus       348 q~~~a~~l~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~------------~~~~~~~~~p~~g~~~~~~l~  406 (468)
                      |..+..++.+         ....++++..++.+++|++.+.+.|.+.            .-..+....|++++|+|++++
T Consensus       290 Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~  369 (425)
T d2hoxa1         290 QLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE  369 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             99999996020134565555489999999999999999999998635763003456554322100137787616998678


Q ss_pred             CCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             8899899999999689499937341678777876999822899999999999999998863
Q batch____       407 EPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWQWGEREEQAVKQLGKLIQER  467 (468)
Q Consensus       407 ~~~~~~~~~~~l~~~Gi~v~pG~~f~~~~~~~~~iRis~~~~~~e~i~~~i~~L~~~l~e~  467 (468)
                      .. +.+.+...|.++||.++||+.|+.+   ++|+|||++. ++|+++++++||+++++.+
T Consensus       370 ~~-~~~~~~~lL~e~GI~v~pGs~FG~~---~~~vRiSl~~-~~e~ld~~l~rL~~~v~~~  425 (425)
T d2hoxa1         370 WE-EDKDCYQTFQNGRINTQNGVGFEAS---SRYVRLSLIK-TQDDFDQLMYYLKDMVKAK  425 (425)
T ss_dssp             SG-GGCSHHHHHHHTTEECEEGGGGTSC---TTEEEEECSS-CHHHHHHHHHHHHHHHTCC
T ss_pred             CC-CHHHHHHHHHHCCEEEECCCCCCCC---CCEEEEEECC-CHHHHHHHHHHHHHHHHCC
T ss_conf             98-0899999999669499717023898---8659999139-9899999999999987269


