BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (155 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A6T512 Ribonuclease H n=155 Tax=Bacteria RepID=RNH_KLEP7 296 1e-79 UniRef50_A7MI34 Ribonuclease H n=2 Tax=Cronobacter RepID=RNH_ENTS8 293 1e-78 UniRef50_Q7N807 Ribonuclease H n=8 Tax=Gammaproteobacteria RepID... 249 2e-65 UniRef50_B4EUG3 Ribonuclease H n=13 Tax=Bacteria RepID=RNH_PROMH 248 5e-65 UniRef50_Q5E3G5 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_VIBF1 246 1e-64 UniRef50_A3QET0 Ribonuclease H n=32 Tax=Bacteria RepID=RNH_SHELP 231 4e-60 UniRef50_B1KHK0 Ribonuclease H n=21 Tax=Bacteria RepID=RNH_SHEWM 230 1e-59 UniRef50_Q65S82 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_... 214 5e-55 UniRef50_Q2J0F8 Ribonuclease H n=19 Tax=Proteobacteria RepID=RNH... 202 4e-51 UniRef50_B0T025 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CAUSK 192 4e-48 UniRef50_Q31H49 Ribonuclease H n=7 Tax=root RepID=RNH_THICR 191 5e-48 UniRef50_B8DIU7 Ribonuclease H n=24 Tax=cellular organisms RepID... 189 2e-47 UniRef50_Q2RPU6 Ribonuclease H n=93 Tax=Bacteria RepID=RNH_RHORT 189 2e-47 UniRef50_A0LGJ7 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_... 185 5e-46 UniRef50_Q5NYP6 Ribonuclease H n=2 Tax=Proteobacteria RepID=RNH_... 184 6e-46 UniRef50_C6XRA4 Ribonuclease H n=7 Tax=Bacteria RepID=C6XRA4_HIRBI 181 8e-45 UniRef50_A1KV38 Ribonuclease H n=98 Tax=cellular organisms RepID... 180 1e-44 UniRef50_D1VE35 Ribonuclease H n=1 Tax=Frankia sp. EuI1c RepID=D... 176 3e-43 UniRef50_A1AT66 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_PELPD 172 3e-42 UniRef50_P29253 Ribonuclease H n=100 Tax=Bacteria RepID=RNH_THET8 172 3e-42 UniRef50_C2D756 Ribonuclease H n=1 Tax=Atopobium vaginae DSM 158... 169 4e-41 UniRef50_Q14IN1 Ribonuclease H n=225 Tax=cellular organisms RepI... 165 5e-40 UniRef50_B8CNS8 Ribonuclease H n=1 Tax=Shewanella piezotolerans ... 159 3e-38 UniRef50_Q5PBQ8 Ribonuclease H n=10 Tax=Bacteria RepID=RNH_ANAMM 158 6e-38 UniRef50_Q8D3D3 Ribonuclease H n=1 Tax=Wigglesworthia glossinidi... 157 8e-38 UniRef50_C6WBP3 Ribonuclease H n=9 Tax=Bacteria RepID=C6WBP3_ACTMD 157 1e-37 UniRef50_Q5FG88 Ribonuclease H n=4 Tax=Rickettsiales RepID=RNH_E... 157 1e-37 UniRef50_D2R4V0 Ribonuclease H n=2 Tax=Planctomycetaceae RepID=D... 156 2e-37 UniRef50_Q2LWY9 Ribonuclease H n=7 Tax=Bacteria RepID=RNH_SYNAS 155 3e-37 UniRef50_A6C006 Ribonuclease H n=1 Tax=Planctomyces maris DSM 87... 155 3e-37 UniRef50_A0L9H3 RNase HI n=1 Tax=Magnetococcus sp. MC-1 RepID=A0... 154 7e-37 UniRef50_B7JVG1 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CYAP8 154 9e-37 UniRef50_A9WK52 Ribonuclease H n=11 Tax=Bacteria RepID=A9WK52_CHLAA 153 1e-36 UniRef50_A3DD79 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CLOTH 152 3e-36 UniRef50_B7J4E2 Ribonuclease H n=2 Tax=Acidithiobacillus ferroox... 152 4e-36 UniRef50_C8X6F1 Ribonuclease H n=1 Tax=Nakamurella multipartita ... 151 5e-36 UniRef50_C2FU18 Ribonuclease H n=2 Tax=Sphingobacterium spiritiv... 149 2e-35 UniRef50_C9KMB8 Ribonuclease HI (Fragment) n=1 Tax=Mitsuokella m... 149 3e-35 UniRef50_C9LX49 Ribonuclease H n=2 Tax=Selenomonas RepID=C9LX49_... 147 1e-34 UniRef50_A5CEP5 Ribonuclease H n=33 Tax=cellular organisms RepID... 146 2e-34 UniRef50_A4XKQ3 Ribonuclease H n=2 Tax=Bacteria RepID=RNH_CALS8 146 3e-34 UniRef50_Q2Z0V7 Putative Ribonuclease HI n=1 Tax=Pseudomonas pha... 145 3e-34 UniRef50_B2S2V0 Ribonuclease H n=4 Tax=Bacteria RepID=RNH_TREPS 145 4e-34 UniRef50_Q17XJ7 Ribonuclease H n=15 Tax=Campylobacterales RepID=... 145 6e-34 UniRef50_A6FRK2 Ribonuclease H n=1 Tax=Roseobacter sp. AzwK-3b R... 144 6e-34 UniRef50_Q2RKU0 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_MOOTA 144 1e-33 UniRef50_A9B1F3 Ribonuclease H n=2 Tax=Bacteria RepID=A9B1F3_HERA2 142 4e-33 UniRef50_C4V6H3 Ribonuclease H n=1 Tax=Selenomonas flueggei ATCC... 142 4e-33 UniRef50_Q5N0R7 Ribonuclease H n=3 Tax=Cyanobacteria RepID=Q5N0R... 142 4e-33 UniRef50_Q8DM24 Ribonuclease H n=27 Tax=Cyanobacteria RepID=RNH_... 140 1e-32 UniRef50_A6GW41 Ribonuclease HI n=13 Tax=Bacteria RepID=A6GW41_F... 139 2e-32 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 139 4e-32 UniRef50_B3EH35 Ribonuclease H n=6 Tax=Bacteria RepID=RNH_CHLL2 138 4e-32 UniRef50_Q9RVX2 Ribonuclease H n=1 Tax=Deinococcus radiodurans R... 138 6e-32 UniRef50_A5FZ26 Ribonuclease H n=11 Tax=Bacteria RepID=RNH_ACICJ 138 7e-32 UniRef50_A5US20 Ribonuclease H n=2 Tax=Bacteria RepID=A5US20_ROSS1 136 2e-31 UniRef50_A4JFN6 Ribonuclease H n=1 Tax=Burkholderia vietnamiensi... 136 2e-31 UniRef50_B0K9M0 Ribonuclease H n=14 Tax=Bacteria RepID=RNH_THEP3 135 3e-31 UniRef50_B6JI04 Ribonuclease HI (RNase HI) n=1 Tax=Oligotropha c... 135 3e-31 UniRef50_A5GAH5 Ribonuclease H n=6 Tax=Desulfuromonadales RepID=... 135 5e-31 UniRef50_B6JLP9 Ribonuclease H n=3 Tax=Helicobacter RepID=B6JLP9... 135 5e-31 UniRef50_C1D179 Putative ribonuclease H n=1 Tax=Deinococcus dese... 134 7e-31 UniRef50_A2FNB2 RNase H family protein n=1 Tax=Trichomonas vagin... 134 1e-30 UniRef50_A9W185 Ribonuclease H n=9 Tax=Alphaproteobacteria RepID... 134 1e-30 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 134 1e-30 UniRef50_A7FR34 Ribonuclease H n=11 Tax=Firmicutes RepID=RNH_CLOB1 133 2e-30 UniRef50_Q7V474 Possible ribonuclease HI n=12 Tax=Bacteria RepID... 133 2e-30 UniRef50_A7NII6 Ribonuclease H n=3 Tax=Bacteria RepID=A7NII6_ROSCS 133 2e-30 UniRef50_A7IEA7 Ribonuclease H n=1 Tax=Xanthobacter autotrophicu... 133 2e-30 UniRef50_Q46HH3 Ribonuclease H n=5 Tax=Cyanobacteria RepID=RNH_P... 131 6e-30 UniRef50_Q6MIM3 Ribonuclease H n=1 Tax=Bdellovibrio bacteriovoru... 131 6e-30 UniRef50_B6BTS2 RNase H n=1 Tax=beta proteobacterium KB13 RepID=... 131 7e-30 UniRef50_A5UB13 Ribonuclease H n=1 Tax=Haemophilus influenzae Pi... 127 1e-28 UniRef50_Q2GDA1 Ribonuclease H n=2 Tax=Neorickettsia RepID=RNH_N... 127 1e-28 UniRef50_A6QCI9 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_SULNB 125 3e-28 UniRef50_A5GWJ8 Ribonuclease H n=3 Tax=Synechococcus RepID=A5GWJ... 125 5e-28 UniRef50_D2XAD4 Ribonuclease H n=1 Tax=Marseillevirus RepID=D2XA... 125 5e-28 UniRef50_Q92S39 Probable ribonuclease HI protein n=1 Tax=Sinorhi... 123 2e-27 UniRef50_Q2S3C1 RNase H n=3 Tax=Bacteria RepID=Q2S3C1_SALRD 122 3e-27 UniRef50_C1A5K0 Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca ... 120 1e-26 UniRef50_B4UMK8 Ribonuclease H n=4 Tax=Anaeromyxobacter RepID=RN... 119 3e-26 UniRef50_UPI0001C31642 Ribonuclease H n=1 Tax=Conexibacter woese... 118 5e-26 UniRef50_A8ZXF3 Ribonuclease H n=1 Tax=Desulfococcus oleovorans ... 118 5e-26 UniRef50_C0QZB8 Ribonuclease H n=2 Tax=Brachyspira RepID=C0QZB8_... 117 1e-25 UniRef50_D0JBH5 Ribonuclease HI n=3 Tax=Flavobacteria RepID=D0JB... 116 3e-25 UniRef50_C3MAD4 Putative ribonuclease HI n=1 Tax=Rhizobium sp. N... 113 2e-24 UniRef50_C3Y169 Putative uncharacterized protein n=1 Tax=Branchi... 107 9e-23 UniRef50_Q1DA37 Ribonuclease H n=1 Tax=Myxococcus xanthus DK 162... 107 1e-22 UniRef50_B4SE10 Ribonuclease H n=1 Tax=Pelodictyon phaeoclathrat... 107 1e-22 UniRef50_A8HXQ9 Ribonuclease H n=1 Tax=Azorhizobium caulinodans ... 106 3e-22 UniRef50_C7NFY8 RNase HI n=1 Tax=Kytococcus sedentarius DSM 2054... 105 3e-22 UniRef50_C0VYC6 Prolyl aminopeptidase n=1 Tax=Actinomyces coleoc... 105 4e-22 UniRef50_A9WMA2 Ribonuclease HI n=1 Tax=Renibacterium salmoninar... 104 9e-22 UniRef50_D2Q8L6 Rnh Ribonuclease H n=2 Tax=Bifidobacterium denti... 103 1e-21 UniRef50_A4Y094 Ribonuclease H n=1 Tax=Pseudomonas mendocina ymp... 102 5e-21 UniRef50_Q83HK9 Ribonuclease H n=3 Tax=Actinomycetales RepID=RNH... 102 5e-21 UniRef50_UPI000050F716 ribonuclease H n=1 Tax=Brevibacterium lin... 100 1e-20 UniRef50_C2CX87 Possible ribonuclease H n=2 Tax=Bifidobacteriace... 100 1e-20 UniRef50_B4VV33 RNase H, putative n=1 Tax=Microcoleus chthonopla... 100 2e-20 UniRef50_D0WKT5 Ribonuclease HI n=1 Tax=Actinomyces sp. oral tax... 100 2e-20 UniRef50_Q7V385 Possible ribonuclease HI n=7 Tax=Prochlorococcus... 100 2e-20 UniRef50_D1NV93 Ribonuclease H n=1 Tax=Bifidobacterium gallicum ... 99 4e-20 UniRef50_A7SAK2 Predicted protein n=1 Tax=Nematostella vectensis... 99 4e-20 UniRef50_A1A0B0 Ribonuclease H n=8 Tax=Bifidobacterium RepID=A1A... 99 5e-20 UniRef50_A6LWB3 Ribonuclease H n=2 Tax=Clostridium RepID=A6LWB3_... 99 6e-20 UniRef50_C7M9U7 RNase HI n=1 Tax=Brachybacterium faecium DSM 481... 98 8e-20 UniRef50_D1BU35 Ribonuclease H n=1 Tax=Xylanimonas cellulosilyti... 98 8e-20 UniRef50_UPI0000587365 PREDICTED: similar to Ribonuclease H1 n=1... 98 1e-19 UniRef50_B8HCV8 Ribonuclease H n=6 Tax=Actinobacteria (class) Re... 97 1e-19 UniRef50_A2SIU3 RNase HI n=2 Tax=Proteobacteria RepID=A2SIU3_METPP 97 1e-19 UniRef50_A3W3Z9 Bifunctional protein: Ribonuclease HI and DNA po... 97 2e-19 UniRef50_A0JT09 Ribonuclease H n=5 Tax=Actinomycetales RepID=A0J... 97 2e-19 UniRef50_C7MN72 RNase HI n=2 Tax=Bacteria RepID=C7MN72_CRYCD 96 3e-19 UniRef50_Q1QJH4 Ribonuclease H n=1 Tax=Nitrobacter hamburgensis ... 96 4e-19 UniRef50_A5L3F5 Bifunctional protein: Ribonuclease HI and DNA po... 96 5e-19 UniRef50_B7KMH6 Ribonuclease H n=1 Tax=Cyanothece sp. PCC 7424 R... 96 5e-19 UniRef50_C5EB64 Ribonuclease H n=2 Tax=Bifidobacterium longum Re... 95 6e-19 UniRef50_C7GZL7 Ribonuclease HI n=1 Tax=Eubacterium saphenum ATC... 94 1e-18 UniRef50_D2R9R7 Ribonuclease HI n=1 Tax=Gardnerella vaginalis 40... 93 3e-18 UniRef50_B2GFP5 Ribonuclease HI n=1 Tax=Kocuria rhizophila DC220... 93 3e-18 UniRef50_D1YER5 Ribonuclease HI n=4 Tax=Actinomycetales RepID=D1... 93 3e-18 UniRef50_C1BKT9 Ribonuclease H1 n=5 Tax=Euteleostomi RepID=C1BKT... 92 4e-18 UniRef50_Q66LX4 Ribonuclease H n=4 Tax=Siphoviridae RepID=Q66LX4... 91 8e-18 UniRef50_O44114 Ribonuclease H1 n=3 Tax=Drosophila melanogaster ... 91 9e-18 UniRef50_UPI000185C12F ribonuclease H n=1 Tax=Corynebacterium am... 91 1e-17 UniRef50_A1SDS5 Ribonuclease H n=1 Tax=Nocardioides sp. JS614 Re... 90 2e-17 UniRef50_C5GNS4 RNase H domain-containing protein n=4 Tax=Onygen... 90 2e-17 UniRef50_B8DW51 Ribonuclease H n=4 Tax=Bifidobacterium animalis ... 90 2e-17 UniRef50_C1B0N1 Ribonuclease HI n=3 Tax=Nocardiaceae RepID=C1B0N... 89 5e-17 UniRef50_Q86MG7 Rnase h protein 1.0, isoform c, partially confir... 88 9e-17 UniRef50_A2QPK3 Contig An07c0360, complete genome n=16 Tax=Eurot... 87 2e-16 UniRef50_D2NR13 Ribonuclease HI n=2 Tax=Rothia mucilaginosa RepI... 87 2e-16 UniRef50_C0ZQX0 Ribonuclease HI n=2 Tax=Rhodococcus erythropolis... 87 2e-16 UniRef50_D0LP47 Ribonuclease H n=1 Tax=Haliangium ochraceum DSM ... 87 2e-16 UniRef50_Q58E11 MGC115038 protein n=2 Tax=Xenopus RepID=Q58E11_X... 87 2e-16 UniRef50_Q04CJ1 RNase HI n=5 Tax=Lactobacillus RepID=Q04CJ1_LACDB 87 2e-16 UniRef50_C8VF62 Ribonuclease H, putative (AFU_orthologue; AFUA_1... 86 3e-16 UniRef50_A8QFV5 RNase H family protein n=1 Tax=Brugia malayi Rep... 86 3e-16 UniRef50_Q6ML79 RnhA protein n=1 Tax=Bdellovibrio bacteriovorus ... 86 3e-16 UniRef50_UPI000186D39C asparagine-rich protein, putative n=1 Tax... 84 1e-15 UniRef50_Q2S3J4 Ribonuclease H n=1 Tax=Salinibacter ruber DSM 13... 83 2e-15 UniRef50_A6RRU3 Putative uncharacterized protein n=1 Tax=Botryot... 83 3e-15 UniRef50_Q7Q3X5 AGAP008088-PA n=1 Tax=Anopheles gambiae RepID=Q7... 82 4e-15 UniRef50_D1CSV7 Ribonuclease HI (Fragment) n=1 Tax=Sinorhizobium... 82 4e-15 UniRef50_B8FI74 Ribonuclease H n=1 Tax=Desulfatibacillum alkeniv... 82 5e-15 UniRef50_B3S3Z5 Putative uncharacterized protein n=1 Tax=Trichop... 81 1e-14 UniRef50_Q9UST8 Ribonuclease H n=1 Tax=Schizosaccharomyces pombe... 81 1e-14 UniRef50_Q5E052 Ribonuclease H n=20 Tax=Vibrionaceae RepID=Q5E05... 79 5e-14 UniRef50_UPI0001757D40 PREDICTED: similar to GA21286-PA n=1 Tax=... 79 5e-14 UniRef50_A8PYJ8 Putative uncharacterized protein n=1 Tax=Malasse... 78 8e-14 UniRef50_Q03P82 RNase HI n=15 Tax=Lactobacillus RepID=Q03P82_LACBA 77 1e-13 UniRef50_D1WSF8 Ribonuclease H n=10 Tax=Streptomyces RepID=D1WSF... 77 1e-13 UniRef50_O60930 Ribonuclease H1 n=26 Tax=Bilateria RepID=RNH1_HUMAN 77 1e-13 UniRef50_Q6C6C0 YALI0E10725p n=1 Tax=Yarrowia lipolytica RepID=Q... 76 3e-13 UniRef50_A8N3A5 Predicted protein n=2 Tax=Eukaryota RepID=A8N3A5... 76 4e-13 UniRef50_UPI000051AB6A PREDICTED: similar to Ribonuclease H1 (RN... 76 4e-13 UniRef50_UPI00016B24DF ribonuclease HI n=1 Tax=candidate divisio... 75 5e-13 UniRef50_B2AD65 Predicted CDS Pa_4_220 n=1 Tax=Podospora anserin... 75 6e-13 UniRef50_B9JEK9 Putative uncharacterized protein n=1 Tax=Agrobac... 75 6e-13 UniRef50_B6VBD2 Putative uncharacterized protein (Fragment) n=1 ... 75 7e-13 UniRef50_Q046W4 RNase HI n=5 Tax=Lactobacillus RepID=Q046W4_LACGA 74 1e-12 UniRef50_B2AS39 Predicted CDS Pa_1_22230 n=2 Tax=Sordariomycetes... 74 1e-12 UniRef50_C0QLK2 RnhA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 74 2e-12 UniRef50_C5S227 Ribonuclease H n=2 Tax=Actinobacillus minor RepI... 73 2e-12 UniRef50_A8EUW9 Ribonuclease HI n=1 Tax=Arcobacter butzleri RM40... 73 2e-12 UniRef50_Q0TWR7 Putative uncharacterized protein n=1 Tax=Phaeosp... 73 3e-12 UniRef50_UPI0001925315 PREDICTED: similar to predicted protein n... 73 3e-12 UniRef50_C9SF93 Ribonuclease H n=2 Tax=Sordariomycetes RepID=C9S... 73 3e-12 UniRef50_A8ZTA6 Ribonuclease H n=1 Tax=Desulfococcus oleovorans ... 73 4e-12 UniRef50_C6VIU9 Ribonuclease H (Putative) n=4 Tax=Lactobacillus ... 72 4e-12 UniRef50_A1D7S4 RNase H domain protein n=1 Tax=Neosartorya fisch... 72 5e-12 UniRef50_Q034K7 RNase H with double-stranded RNA/RNA-DNA hybrid ... 72 6e-12 UniRef50_C0QFZ9 RnhA1 n=1 Tax=Desulfobacterium autotrophicum HRM... 71 8e-12 UniRef50_B0CND0 Predicted protein n=1 Tax=Laccaria bicolor S238N... 71 1e-11 UniRef50_B0WK63 Putative uncharacterized protein n=1 Tax=Culex q... 71 1e-11 UniRef50_Q9X7R6 Ribonuclease HI n=8 Tax=Actinomycetales RepID=RN... 71 1e-11 UniRef50_A9EZR8 Ribonuclease H n=1 Tax=Sorangium cellulosum 'So ... 71 1e-11 UniRef50_UPI000180BF60 PREDICTED: similar to predicted protein n... 71 1e-11 UniRef50_Q03HC1 RNase HI n=3 Tax=Lactobacillaceae RepID=Q03HC1_P... 70 2e-11 UniRef50_A9CET6 Ribonuclease H n=1 Tax=Agrobacterium tumefaciens... 70 3e-11 UniRef50_Q4P0S4 Putative uncharacterized protein n=1 Tax=Ustilag... 69 3e-11 UniRef50_A7EQD5 Putative uncharacterized protein n=2 Tax=Sclerot... 69 3e-11 UniRef50_Q54222 Putative RNaseH n=1 Tax=Streptomyces galbus RepI... 69 3e-11 UniRef50_C1BPL6 Ribonuclease H1 n=1 Tax=Caligus rogercresseyi Re... 69 3e-11 UniRef50_A8B979 Ribonuclease H n=2 Tax=Giardia intestinalis RepI... 69 5e-11 UniRef50_Q6CH42 YALI0A12705p n=1 Tax=Yarrowia lipolytica RepID=Q... 67 1e-10 UniRef50_C4WXR8 ACYPI28043 protein n=1 Tax=Acyrthosiphon pisum R... 67 1e-10 UniRef50_D2EJR4 RNase HI n=1 Tax=Pediococcus acidilactici 7_4 Re... 67 2e-10 UniRef50_Q6C0A0 YALI0F26543p n=1 Tax=Yarrowia lipolytica RepID=Q... 67 2e-10 UniRef50_C2KDF2 Ribonuclease n=16 Tax=Lactobacillus RepID=C2KDF2... 67 3e-10 UniRef50_Q0URN5 Putative uncharacterized protein n=2 Tax=Leotiom... 66 3e-10 UniRef50_C4QWX0 Ribonuclease H1 n=1 Tax=Pichia pastoris GS115 Re... 66 3e-10 UniRef50_A8XYS2 C. briggsae CBR-RNH-1.3 protein n=2 Tax=Caenorha... 66 4e-10 UniRef50_B9WJ33 Ribonuclease H, putative n=6 Tax=Saccharomycetal... 65 5e-10 UniRef50_Q484S6 Ribonuclease HI n=3 Tax=Alteromonadales RepID=Q4... 65 6e-10 UniRef50_Q8SD07 PHIKZ155 n=2 Tax=phiKZ-like viruses RepID=Q8SD07... 65 8e-10 UniRef50_A2QI95 Function: the ribonuclease H n=1 Tax=Aspergillus... 64 1e-09 UniRef50_Q7S4S2 Predicted protein n=2 Tax=Sordariales RepID=Q7S4... 64 1e-09 UniRef50_Q9XVE6 Protein C04F12.9, confirmed by transcript eviden... 64 2e-09 UniRef50_A8PI66 Predicted protein n=1 Tax=Coprinopsis cinerea ok... 64 2e-09 UniRef50_C7YX62 Putative uncharacterized protein n=1 Tax=Nectria... 63 2e-09 UniRef50_Q12R78 Ribonuclease H n=22 Tax=Proteobacteria RepID=Q12... 63 3e-09 UniRef50_D0NEW7 Ribonuclease, putative n=1 Tax=Phytophthora infe... 63 3e-09 UniRef50_B6B8N1 RNA-directed DNA polymerase n=1 Tax=Rhodobactera... 63 3e-09 UniRef50_C7YSN3 Putative uncharacterized protein n=1 Tax=Nectria... 63 3e-09 UniRef50_A5D9X7 Putative uncharacterized protein n=2 Tax=Pichia ... 63 4e-09 UniRef50_Q2JHH6 Ribonuclease H n=2 Tax=Synechococcus RepID=Q2JHH... 62 4e-09 UniRef50_B5ZRJ7 Ribonuclease H n=6 Tax=Rhizobium RepID=B5ZRJ7_RHILW 62 4e-09 UniRef50_C5R9S8 Ribonuclease H n=1 Tax=Weissella paramesenteroid... 62 5e-09 UniRef50_Q7MNB1 Ribonuclease HI n=4 Tax=Vibrio vulnificus YJ016 ... 62 6e-09 UniRef50_A5E5Q5 Putative uncharacterized protein n=1 Tax=Loddero... 62 6e-09 UniRef50_A5DAG3 Putative uncharacterized protein n=1 Tax=Pichia ... 62 7e-09 UniRef50_A5E5Q8 Putative uncharacterized protein n=1 Tax=Loddero... 62 7e-09 UniRef50_A4QYI2 Putative uncharacterized protein n=1 Tax=Magnapo... 61 9e-09 UniRef50_Q6CGX9 YALI0A15059p n=1 Tax=Yarrowia lipolytica RepID=Q... 61 1e-08 UniRef50_Q2HHV6 Putative uncharacterized protein n=2 Tax=Sordari... 61 1e-08 UniRef50_C1BQR6 Ribonuclease H1 n=2 Tax=Caligus rogercresseyi Re... 60 2e-08 UniRef50_C4QPU4 Phosphoglucomutase, putative n=5 Tax=Schistosoma... 60 2e-08 UniRef50_UPI0001908521 putative ribonuclease HI n=3 Tax=Rhizobiu... 60 2e-08 UniRef50_C9DGJ5 Putative RNaseH ribonuclease n=1 Tax=Deftia phag... 60 3e-08 UniRef50_A2QYZ3 Catalytic activity: Endonucleolytic cleavage to ... 59 3e-08 UniRef50_Q2GRU5 Putative uncharacterized protein n=1 Tax=Chaetom... 59 5e-08 UniRef50_Q6CHD9 YALI0A09878p n=1 Tax=Yarrowia lipolytica RepID=Q... 59 6e-08 UniRef50_A8PCJ1 RNase H family protein n=2 Tax=Brugia malayi Rep... 58 8e-08 UniRef50_A6GJD7 DNA polymerase III, epsilon subunit n=1 Tax=Ples... 58 1e-07 UniRef50_Q5UPY1 Probable ribonuclease H n=1 Tax=Acanthamoeba pol... 57 2e-07 UniRef50_Q4D6K7 Ribonuclease H1, putative n=2 Tax=Trypanosoma cr... 57 2e-07 UniRef50_D0NEW3 Putative uncharacterized protein n=2 Tax=Phytoph... 57 2e-07 UniRef50_Q5KPB0 Ribonuclease H, putative n=2 Tax=Filobasidiella ... 57 3e-07 UniRef50_B8MPL2 Ribonuclease H1, putative n=1 Tax=Talaromyces st... 56 3e-07 UniRef50_B6QMQ6 Ribonuclease H1, putative n=2 Tax=Leotiomyceta R... 56 3e-07 UniRef50_A6RSV0 Putative uncharacterized protein n=1 Tax=Botryot... 56 4e-07 UniRef50_A3US86 Ribonuclease H n=3 Tax=Vibrio RepID=A3US86_VIBSP 56 4e-07 UniRef50_UPI000174364E ribonuclease H n=1 Tax=candidate division... 56 4e-07 UniRef50_Q6FPF4 Similar to uniprot|Q04740 Saccharomyces cerevisi... 56 4e-07 UniRef50_A5D9X8 Putative uncharacterized protein n=2 Tax=Pichia ... 55 5e-07 UniRef50_C9ZTC3 Ribonuclease H1 n=3 Tax=Trypanosoma brucei RepID... 55 5e-07 UniRef50_A1CQB1 Reverse transcriptase, RNaseH, putative n=1 Tax=... 55 7e-07 UniRef50_A8V3Z1 Ribonuclease HI (Fragment) n=1 Tax=Hydrogenivirg... 55 8e-07 UniRef50_Q6BQV8 DEHA2E01870p n=2 Tax=Debaryomyces hansenii RepID... 55 9e-07 UniRef50_C8XUL4 Putative ribonuclease HI n=1 Tax=Shigella phage ... 55 9e-07 UniRef50_C5M9Q1 Putative uncharacterized protein n=1 Tax=Candida... 54 1e-06 UniRef50_P54162 14.7 kDa ribonuclease H-like protein n=82 Tax=Ba... 54 1e-06 UniRef50_D2R7S3 Putative uncharacterized protein n=1 Tax=Pirellu... 54 2e-06 UniRef50_Q07762 Ribonuclease H n=4 Tax=Trypanosomatidae RepID=RN... 53 3e-06 UniRef50_Q6CHQ1 YALI0A06523p n=1 Tax=Yarrowia lipolytica RepID=Q... 53 3e-06 UniRef50_B6H8I6 Pc16g06030 protein n=1 Tax=Penicillium chrysogen... 53 3e-06 UniRef50_C5DHG7 KLTH0E04202p n=1 Tax=Lachancea thermotolerans CB... 52 5e-06 UniRef50_C5M9Q2 Putative uncharacterized protein n=1 Tax=Candida... 52 6e-06 UniRef50_A3ZXA0 Probable ribonuclease HI n=1 Tax=Blastopirellula... 52 7e-06 >UniRef50_A6T512 Ribonuclease H n=155 Tax=Bacteria RepID=RNH_KLEP7 Length = 155 Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 140/154 (90%), Positives = 146/154 (94%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 MLKQVEIFTDGSCLGNPGPGGYGAI+RYR EKTFSAGY TTNNRMELMAAIVALEALK Sbjct: 1 MLKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEALK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EHCEV+LSTDSQYVRQGITQWIHNWKKRGWKTA+KKPVKNVDLWQRLDAALGQH+IKWEW Sbjct: 61 EHCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKWEW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 VKGHAGHPENERCDELARAAA +PTL+D GY E Sbjct: 121 VKGHAGHPENERCDELARAAASHPTLDDVGYLPE 154 >UniRef50_A7MI34 Ribonuclease H n=2 Tax=Cronobacter RepID=RNH_ENTS8 Length = 158 Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 138/155 (89%), Positives = 144/155 (92%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYGAILRY+ E+TFSAGY TTNNRMELMAAIV+LEAL+ Sbjct: 1 MRKQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVSLEALR 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EHC V LSTDSQYVRQGITQWIHNWKKRGWKTA+KKPVKNVDLWQRLDAAL QH+IKWEW Sbjct: 61 EHCIVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHEIKWEW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 VKGHAGHPENERCDELARAAAM PTLEDTGYQ E Sbjct: 121 VKGHAGHPENERCDELARAAAMAPTLEDTGYQPEA 155 >UniRef50_Q7N807 Ribonuclease H n=8 Tax=Gammaproteobacteria RepID=RNH_PHOLL Length = 156 Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYG +LRY+ EKT S G+ TTNNRMELMAAI+ LE L Sbjct: 1 MGKQVEIFTDGSCLGNPGPGGYGVLLRYQQHEKTLSEGFYHTTNNRMELMAAIIGLETLT 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+++L+TDSQYVRQGITQWIHNWKKRGW+ ADK PV NVDLWQRLD A+ +H I W+W Sbjct: 61 RPCKIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISRHNIDWQW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENERCDELARAAA +PT DTGY Sbjct: 121 VKGHAGHDENERCDELARAAANSPTETDTGY 151 >UniRef50_B4EUG3 Ribonuclease H n=13 Tax=Bacteria RepID=RNH_PROMH Length = 159 Score = 248 bits (633), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 131/151 (86%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYGAILRY+ EKT S G+ TTNNRMEL+AAIVALEALK Sbjct: 1 MHKQVEIFTDGSCLGNPGPGGYGAILRYQQHEKTLSEGFFMTTNNRMELLAAIVALEALK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C++ L+TDSQYVRQGIT+WIH+WKKR W+ ADK PV NVDLW+RLD A+ +H+I+W W Sbjct: 61 FPCKITLTTDSQYVRQGITKWIHSWKKRQWRKADKSPVLNVDLWKRLDKAIERHEIEWHW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENERCDELA+AAA +PT EDTGY Sbjct: 121 VKGHAGHDENERCDELAKAAAQSPTKEDTGY 151 >UniRef50_Q5E3G5 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_VIBF1 Length = 157 Score = 246 bits (628), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 ++KQVEIFTDGSCLGNPGPGGYG ++RY+G EKTFS G+ +TTNNRME++AA+VAL LK Sbjct: 5 IMKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSEGFNKTTNNRMEMLAAVVALRKLK 64 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C VIL+TDSQYVRQGITQWIH WKKR WK ADKKPV N DLW++LDA +H+I W W Sbjct: 65 EPCSVILTTDSQYVRQGITQWIHGWKKRDWKKADKKPVVNADLWKQLDAESERHKIDWRW 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENE CDELAR AA NPT +DTGY Sbjct: 125 VKGHAGHRENEMCDELARTAAENPTQDDTGY 155 >UniRef50_A3QET0 Ribonuclease H n=32 Tax=Bacteria RepID=RNH_SHELP Length = 158 Score = 231 bits (590), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 108/154 (70%), Positives = 125/154 (81%), Gaps = 1/154 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 LKQ+ IFTDGSCLGNPGPGGYG +++Y+ K S G+ TTNNRMEL+A I+ALEALKE Sbjct: 4 LKQLLIFTDGSCLGNPGPGGYGVVMKYKAHVKELSGGFALTTNNRMELLAPIMALEALKE 63 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C++IL++DSQY+RQGITQWIH WKKRGW TA K+PVKNVDLWQRLDAA H+I W WV Sbjct: 64 PCQIILTSDSQYMRQGITQWIHGWKKRGWLTAAKEPVKNVDLWQRLDAATSTHKIDWRWV 123 Query: 122 KGHAGHPENERCDELAR-AAAMNPTLEDTGYQVE 154 KGHAGH ENERCD LAR AA P+ DTGYQ + Sbjct: 124 KGHAGHIENERCDTLAREAAEAGPSEVDTGYQAK 157 >UniRef50_B1KHK0 Ribonuclease H n=21 Tax=Bacteria RepID=RNH_SHEWM Length = 161 Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/156 (67%), Positives = 124/156 (79%), Gaps = 1/156 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 +LKQ+ IFTDGSCLGNPGPGGYG +++Y+ K S G+ TTNNRMEL+A I+ALEALK Sbjct: 3 VLKQLSIFTDGSCLGNPGPGGYGVVMKYKAHTKELSDGFALTTNNRMELLAPIIALEALK 62 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C++IL++DSQY+RQGITQWIH WKK+ W T+ K+PVKNVDLW+RLDAA H+I W W Sbjct: 63 VPCKIILTSDSQYMRQGITQWIHGWKKKNWITSTKQPVKNVDLWKRLDAATQSHEIDWHW 122 Query: 121 VKGHAGHPENERCDELARAAA-MNPTLEDTGYQVEV 155 VKGHAGH ENERCD LAR AA PT ED GYQ V Sbjct: 123 VKGHAGHVENERCDTLARVAAEAKPTQEDLGYQPSV 158 >UniRef50_Q65S82 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_MANSM Length = 158 Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 100/152 (65%), Positives = 114/152 (75%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQ+EIFTDGSCLGNPG GG G +LRY+ EKT S GY +TTNNRMEL A I AL LK Sbjct: 5 MRKQIEIFTDGSCLGNPGAGGIGVVLRYKQHEKTLSQGYFKTTNNRMELRAVIEALNLLK 64 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C V L +DSQY++ GITQWI NWKK+ WK ++ KPVKN DLW LD A+ H I W W Sbjct: 65 EPCAVTLHSDSQYMKNGITQWIFNWKKKNWKASNGKPVKNQDLWMALDNAVQAHTIDWRW 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQ 152 VKGH+GH ENE CD+LA+ A NPTLED GYQ Sbjct: 125 VKGHSGHRENELCDQLAKQGAENPTLEDIGYQ 156 >UniRef50_Q2J0F8 Ribonuclease H n=19 Tax=Proteobacteria RepID=RNH_RHOP2 Length = 161 Score = 202 bits (513), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 95/136 (69%), Positives = 106/136 (77%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + V I TDG+C GNPGPGG+GAIL++ EK G TTNNRMEL+AAI ALEAL Sbjct: 13 RPVVIHTDGACSGNPGPGGWGAILKFGDTEKELKGGEAHTTNNRMELLAAISALEALTRP 72 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C V L TDSQYV+ GI WIHNWK+ GWKTADKKPVKNVDLWQRLDAAL HQ++W WVK Sbjct: 73 CTVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHQVRWHWVK 132 Query: 123 GHAGHPENERCDELAR 138 GHAGH ENER D+LAR Sbjct: 133 GHAGHDENERADQLAR 148 >UniRef50_B0T025 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CAUSK Length = 154 Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/150 (62%), Positives = 111/150 (74%), Gaps = 1/150 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M ++ I+TDG+C GNPGPGG+GA+L Y ++K G TTNNRMELMAAI ALEAL Sbjct: 1 MTPKLVIYTDGACRGNPGPGGWGALLMYGDKKKEIMGGDLATTNNRMELMAAIQALEALN 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + L TDSQYV +G+TQWIH WK +GWKTADK PVKNVDLWQRLDAA +H++ W W Sbjct: 61 KPTKAELHTDSQYVMKGVTQWIHGWKAKGWKTADKSPVKNVDLWQRLDAARARHEVDWRW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTG 150 VKGHAGH NER DELAR M TL + G Sbjct: 121 VKGHAGHVHNERADELAR-LGMLKTLGERG 149 >UniRef50_Q31H49 Ribonuclease H n=7 Tax=root RepID=RNH_THICR Length = 145 Score = 191 bits (486), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 90/139 (64%), Positives = 104/139 (74%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +++VE+FTDG C GNPGPGG+GA+LR+ G EK TTNNRMEL AAI L+ALK Sbjct: 1 MQEVELFTDGGCRGNPGPGGWGALLRFGGVEKELKGAELDTTNNRMELTAAIEGLKALKR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V L+TDSQYV+ GITQW+ NWKK WKTA KKPVKN DLWQ LD AL H + W WV Sbjct: 61 PCKVTLTTDSQYVKNGITQWMTNWKKNNWKTAAKKPVKNKDLWQALDEALQPHDVTWAWV 120 Query: 122 KGHAGHPENERCDELARAA 140 KGH+GH ENER DELA A Sbjct: 121 KGHSGHDENERVDELANQA 139 >UniRef50_B8DIU7 Ribonuclease H n=24 Tax=cellular organisms RepID=RNH_DESVM Length = 156 Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 90/153 (58%), Positives = 112/153 (73%), Gaps = 2/153 (1%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K V+ FTDGSCLGNPGPGG+ A+LR G E+ S G+ TTNNRME++A I AL LKE Sbjct: 3 MKNVQAFTDGSCLGNPGPGGWAAVLRCNGSERELSGGFALTTNNRMEILAVIEALALLKE 62 Query: 62 HCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C V L TDSQYVR + +W+ W++ GWKT+DKKPVKN DLW+RL L HQ+++ W Sbjct: 63 PCGVDLYTDSQYVRNAVEKKWLAGWRRNGWKTSDKKPVKNRDLWERLQPLLDLHQVRFHW 122 Query: 121 VKGHAGHPENERCDELARAAAMNPTL-EDTGYQ 152 V+GH+GHPENERCD LAR A + L DTGY+ Sbjct: 123 VRGHSGHPENERCDVLARTQASSRGLPPDTGYR 155 >UniRef50_Q2RPU6 Ribonuclease H n=93 Tax=Bacteria RepID=RNH_RHORT Length = 166 Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/135 (65%), Positives = 103/135 (76%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V++FTDG+C GNPGPGG+G ILR+ EK G T TTNNRMELMA I LEAL+ Sbjct: 13 RVDMFTDGACSGNPGPGGWGTILRWGDTEKELWGGETPTTNNRMELMAVIRGLEALRRPV 72 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDS+YV GIT WIH WK+ GWKTA KKPVKN DLW+RLDAALG H I W+WV+G Sbjct: 73 TVTIHTDSRYVHDGITGWIHGWKRNGWKTAAKKPVKNEDLWRRLDAALGTHDISWQWVRG 132 Query: 124 HAGHPENERCDELAR 138 H+GH ENER DELAR Sbjct: 133 HSGHVENERADELAR 147 >UniRef50_A0LGJ7 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_SYNFM Length = 164 Score = 185 bits (469), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 87/138 (63%), Positives = 103/138 (74%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K VEIF DG+C GNPGPGG+GA+LRY G+EK S TTNN+MEL A I AL ALKE Sbjct: 15 KHVEIFADGACRGNPGPGGWGAVLRYHGKEKELSGYAEYTTNNQMELAAVIQALRALKEP 74 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C V ++TDS+Y+R GI+ WIH WK+ GWKT K V+N +LW LD A H+I W+WVK Sbjct: 75 CRVTITTDSRYLRDGISLWIHKWKQNGWKTRVKTDVRNKELWIALDEACLPHEIDWQWVK 134 Query: 123 GHAGHPENERCDELARAA 140 GH+GHPENERCD LARAA Sbjct: 135 GHSGHPENERCDALARAA 152 >UniRef50_Q5NYP6 Ribonuclease H n=2 Tax=Proteobacteria RepID=RNH_AZOSE Length = 153 Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/138 (63%), Positives = 102/138 (73%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M Q+EIFTDG+C GNPGPGG+GAILR EK G TTNNRMEL+A I ALE LK Sbjct: 1 MTDQIEIFTDGACSGNPGPGGWGAILRSGAHEKEIWGGEPHTTNNRMELLAVIRALELLK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + TDSQYV++GI++WIH WK RGWKTA K PVKN DLW+ LD A +HQ++W W Sbjct: 61 RPVVARVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNEDLWRALDEAASRHQVQWVW 120 Query: 121 VKGHAGHPENERCDELAR 138 V+GHAGH ENER DELAR Sbjct: 121 VRGHAGHVENERADELAR 138 >UniRef50_C6XRA4 Ribonuclease H n=7 Tax=Bacteria RepID=C6XRA4_HIRBI Length = 321 Score = 181 bits (458), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 88/139 (63%), Positives = 101/139 (72%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 QV+I+TDG+C GNPGPGG+GA+L+ EK G TTNNRMELM AI AL +LK Sbjct: 177 QVQIWTDGACSGNPGPGGWGALLKMGEHEKELYGGEKDTTNNRMELMGAIEALTSLKGPS 236 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 VILSTDS YV+ G+T+WIH WKK GWKTA KKPVKN DLWQ LD A +HQI+W WVKG Sbjct: 237 NVILSTDSTYVKDGLTKWIHGWKKNGWKTAAKKPVKNQDLWQALDEACSRHQIEWRWVKG 296 Query: 124 HAGHPENERCDELARAAAM 142 HAG NER D LA +M Sbjct: 297 HAGDEGNERADGLAVKGSM 315 Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/155 (54%), Positives = 105/155 (67%), Gaps = 4/155 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M +EI+TDG+C GNPGPGG+GA++ G+E G TTNNRMELM AI AL ++ Sbjct: 1 MTDMIEIWTDGACSGNPGPGGWGALIVNDGQEIELYGGEANTTNNRMELMGAIEALNSIN 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ L TDS YV+ G+TQWIH WK+ GWKTA K+PVKN DLWQ LD A +HQI+W+W Sbjct: 61 TSSKITLHTDSTYVKNGLTQWIHGWKRNGWKTASKQPVKNKDLWQALDEACKRHQIEWKW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 VKGH+G NER D LA A E G ++EV Sbjct: 121 VKGHSGDEGNERADSLAVKGAR----EAAGGKLEV 151 >UniRef50_A1KV38 Ribonuclease H n=98 Tax=cellular organisms RepID=RNH_NEIMF Length = 145 Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 82/141 (58%), Positives = 100/141 (70%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M V ++TDG+C GNPG GG+G ++RY EK G +TTNNRMEL A I L++LK Sbjct: 1 MDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C VI+ TDSQYV+ G+ WIH WK+ GWKTA K+PVKN DLW+ LD +GQHQ+ W W Sbjct: 61 RRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWTW 120 Query: 121 VKGHAGHPENERCDELARAAA 141 VKGHAGH ENER D+LA A Sbjct: 121 VKGHAGHAENERADDLANRGA 141 >UniRef50_D1VE35 Ribonuclease H n=1 Tax=Frankia sp. EuI1c RepID=D1VE35_9ACTO Length = 192 Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 84/134 (62%), Positives = 100/134 (74%), Gaps = 1/134 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKEHC 63 VEI+TDG+C GNPGPGG+GA+LRY E+ G TTNNRMELMAAI+ALEAL Sbjct: 47 VEIYTDGACKGNPGPGGWGAVLRYGTHERAICGGEAGDTTNNRMELMAAIMALEALTRPS 106 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDSQY+R GI +W+ WK+ GWKT +KKPVKNVDLWQRLDAA H ++W WV+G Sbjct: 107 VVRIHTDSQYLRSGINEWLARWKRNGWKTGEKKPVKNVDLWQRLDAATRVHDVEWLWVRG 166 Query: 124 HAGHPENERCDELA 137 HAG P NE D+LA Sbjct: 167 HAGDPGNELADQLA 180 >UniRef50_A1AT66 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_PELPD Length = 163 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 76/136 (55%), Positives = 95/136 (69%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+ DG+C GNPGPGGYGAILRY G EK TTNNRMEL AA+ AL L C Sbjct: 20 VEIYCDGACSGNPGPGGYGAILRYNGHEKEIRGSEAHTTNNRMELTAAMEALRLLTRPCR 79 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 + + TDSQY+ +G+T+WI W++RGW+ + K+PV N DLW+ L H + W+W++GH Sbjct: 80 ITIVTDSQYLVKGMTEWIQGWQRRGWQNSKKEPVLNRDLWEELLKLSAHHDVSWQWIRGH 139 Query: 125 AGHPENERCDELARAA 140 AGH ENERCD LAR A Sbjct: 140 AGHAENERCDSLARQA 155 >UniRef50_P29253 Ribonuclease H n=100 Tax=Bacteria RepID=RNH_THET8 Length = 166 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 81/142 (57%), Positives = 104/142 (73%), Gaps = 1/142 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K+V +FTDG+CLGNPGPGG+ A+LR+ EK S G TTNNRMEL AAI L+ALKE Sbjct: 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP 66 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 CEV L TDS Y+++ T+ W+ W+KRGW+TA+ KPVKN DLW+ L A+ H++++ +V Sbjct: 67 CEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFV 126 Query: 122 KGHAGHPENERCDELARAAAMN 143 KGH GHPENER D AR A + Sbjct: 127 KGHTGHPENERVDREARRQAQS 148 >UniRef50_C2D756 Ribonuclease H n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D756_9ACTN Length = 183 Score = 169 bits (427), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/144 (60%), Positives = 105/144 (72%), Gaps = 6/144 (4%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY---RGRE--KTFSAGYTRTTNNRMELMAAIVALEA 58 QV I+TDGS GNPGPGGYGA++ + GRE + S GY +TTNNRMEL+A I+ALE Sbjct: 23 QVIIWTDGSSRGNPGPGGYGAVMLFYDSAGREHKRELSCGYRQTTNNRMELLAPIIALEE 82 Query: 59 LKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 LK C+V L +DSQYV Q WI W+KRGWKTA+K+PVKNVDLW+RL A+ H++ Sbjct: 83 LKYPCKVELHSDSQYVIHAFQQHWIDGWQKRGWKTANKQPVKNVDLWKRLLRAMQPHEMS 142 Query: 118 WEWVKGHAGHPENERCDELARAAA 141 + WVKGHAG NERCDELA AA Sbjct: 143 FVWVKGHAGTELNERCDELATTAA 166 >UniRef50_Q14IN1 Ribonuclease H n=225 Tax=cellular organisms RepID=RNH_FRAT1 Length = 152 Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 76/137 (55%), Positives = 96/137 (70%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +TDG+C GNPG GG+GAIL Y G +K TTNNRMELMAAI L+ALK C Sbjct: 9 RVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQALKRKC 68 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 ++ + TDS+Y++ GI +W+ NWK GWKTA KK VKN DLWQ LD+ +H + W WVKG Sbjct: 69 DITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWGWVKG 128 Query: 124 HAGHPENERCDELARAA 140 H+G+ NE+ DELA A Sbjct: 129 HSGNAGNEKADELANKA 145 >UniRef50_B8CNS8 Ribonuclease H n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CNS8_SHEPW Length = 183 Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 69/106 (65%), Positives = 85/106 (80%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 LKQ+ IFTDGSCLGNPGPGGYG +++Y+ + G+ TTNNRME++A IVALEALK Sbjct: 25 LKQISIFTDGSCLGNPGPGGYGIVMKYKKHTHELAGGFALTTNNRMEMLAPIVALEALKV 84 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 C+VIL++DSQY+RQGITQWIH WK+ GW T+ K+ VKNVDLW L Sbjct: 85 PCQVILTSDSQYMRQGITQWIHGWKRNGWVTSTKQAVKNVDLWHVL 130 >UniRef50_Q5PBQ8 Ribonuclease H n=10 Tax=Bacteria RepID=RNH_ANAMM Length = 154 Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 76/138 (55%), Positives = 94/138 (68%), Gaps = 1/138 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +V I+TDG+C GNPGPGG+GA+LR+ G E+ S G TTNNRMEL A I+AL AL Sbjct: 7 SRVAIYTDGACSGNPGPGGWGAVLRFGDGGERRISGGSDDTTNNRMELTAVIMALAALSG 66 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V ++TDS YV+ GIT+WI WK GW+T++K VKNVDLW L+ H I+W WV Sbjct: 67 PCSVCVNTDSTYVKNGITEWIRKWKLNGWRTSNKSAVKNVDLWVELERLTLLHSIEWRWV 126 Query: 122 KGHAGHPENERCDELARA 139 K HAG+ NE D LAR Sbjct: 127 KAHAGNEYNEEADMLARG 144 >UniRef50_Q8D3D3 Ribonuclease H n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RNH_WIGBR Length = 157 Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 78/152 (51%), Positives = 107/152 (70%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M K+++IF DG+CLGNPGPGGYG I+ + K S GY TTNNRME+MAAI+ALE+L Sbjct: 1 MKKKIKIFIDGACLGNPGPGGYGVIICGKKLYKEISNGYYLTTNNRMEIMAAIIALESLH 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + +I++TDS+Y++ GIT+WI WK WKT + K VKN+DLW +L+ +H I W W Sbjct: 61 DMYNIIINTDSKYLKNGITKWIKVWKNNKWKTNNNKSVKNIDLWIKLEYLSKKHFINWNW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQ 152 +KGH + +++RCD LA+ +A NP D YQ Sbjct: 121 IKGHTNNIKHDRCDFLAKISAKNPNAIDKIYQ 152 >UniRef50_C6WBP3 Ribonuclease H n=9 Tax=Bacteria RepID=C6WBP3_ACTMD Length = 185 Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/134 (57%), Positives = 92/134 (68%), Gaps = 1/134 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTR-TTNNRMELMAAIVALEALKEHC 63 V+I+TDG+C NPGPGG+G +LRY E+ G TTNNRMEL A I AL+AL Sbjct: 6 VDIYTDGACRPNPGPGGWGVLLRYGAHERELCGGEAGVTTNNRMELTAPIRALDALTRPS 65 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V L TDS YVR GITQWI WK +GW T K+PVKN DLW+ LD A +H+++W WVKG Sbjct: 66 VVRLHTDSTYVRNGITQWIKGWKAKGWLTKGKEPVKNADLWRELDRATARHRVEWRWVKG 125 Query: 124 HAGHPENERCDELA 137 HAG NER D+LA Sbjct: 126 HAGDEGNERADQLA 139 >UniRef50_Q5FG88 Ribonuclease H n=4 Tax=Rickettsiales RepID=RNH_EHRRG Length = 146 Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/138 (52%), Positives = 94/138 (68%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 L +V ++TDG+C GNPGPGG+GA+L + EKT G+ TTNNRMEL A + AL+ L Sbjct: 5 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDV 64 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + L TDS YV+ GIT WI WK GW+TADK PVKN++LW LD + H+I W WV Sbjct: 65 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADKLPVKNLELWLELDKIVKYHKITWYWV 124 Query: 122 KGHAGHPENERCDELARA 139 K H+G+ NE+ D LAR+ Sbjct: 125 KAHSGNLYNEKADMLARS 142 >UniRef50_D2R4V0 Ribonuclease H n=2 Tax=Planctomycetaceae RepID=D2R4V0_9PLAN Length = 157 Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 5/143 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +V +FTDG+C GNPGPGG+ ILR+ G+EK S G TTNNRMEL A + L AL Sbjct: 9 EVLLFTDGACSGNPGPGGWAYILRHVASGKEKECSGGELETTNNRMELTAVVEGLRALTR 68 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADK---KPVKNVDLWQRLDAALGQHQIKW 118 V + TDS+YVR+G+++W+ WK+ GW+ + KPVKNVDLW++LD + +HQ+K Sbjct: 69 TTAVEVLTDSEYVRKGMSEWMAGWKRNGWQRKENGKLKPVKNVDLWKQLDELVAKHQLKL 128 Query: 119 EWVKGHAGHPENERCDELARAAA 141 V GH+GHPEN+RCDELA AA+ Sbjct: 129 TRVAGHSGHPENDRCDELAVAAS 151 >UniRef50_Q2LWY9 Ribonuclease H n=7 Tax=Bacteria RepID=RNH_SYNAS Length = 173 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/151 (52%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 KQV I+TDG+CLGNPGPGGYG +L Y K S GY TTNNRME++AAI LEALK Sbjct: 22 KQVIIYTDGACLGNPGPGGYGVVLLYGEHRKELSGGYRLTTNNRMEILAAIKGLEALKSA 81 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L +DSQY+ I + W WK GWK ++ N DLW+RL +H I + WV Sbjct: 82 CSVTLYSDSQYLVNAINKGWAQRWKANGWKRNAREKALNPDLWERLLELCSRHDITFVWV 141 Query: 122 KGHAGHPENERCDELARAAAMNPTLE-DTGY 151 +GHA + ENERCD L++ AA L+ D GY Sbjct: 142 RGHANNKENERCDVLSKEAAGRADLKADPGY 172 >UniRef50_A6C006 Ribonuclease H n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C006_9PLAN Length = 164 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/146 (53%), Positives = 100/146 (68%), Gaps = 5/146 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 L V+IFTDG+C GNPGPGG+G ILR+ G EK FS G TTNN+MEL A I LE L Sbjct: 11 LPFVQIFTDGACRGNPGPGGWGVILRHPATGTEKEFSGGEAVTTNNQMELQAVISGLELL 70 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADK---KPVKNVDLWQRLDAALGQHQI 116 K V + TDS YV +G +W+ NWKK W+ + KPVKN +LW++LD L +H++ Sbjct: 71 KRTSRVEVITDSVYVAKGSKEWMPNWKKNNWRRREGKSWKPVKNEELWRKLDVLLERHEV 130 Query: 117 KWEWVKGHAGHPENERCDELARAAAM 142 ++ +KGH+GHPENERCDELA A+ Sbjct: 131 RFTQIKGHSGHPENERCDELAVEFAL 156 >UniRef50_A0L9H3 RNase HI n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H3_MAGSM Length = 238 Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 2/138 (1%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKEH 62 ++ ++TDG+C GNPGPGG+G RY G + G+ +TTNNRME++AAI ALE L E Sbjct: 87 EIILYTDGACSGNPGPGGWGVHGRY-GEQMADQMGWAPQTTNNRMEMLAAIHALEPLPEG 145 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 V + TDS YV+ GIT+WIH WK RGWK +D V NVDLW+RLDAA + W+W+K Sbjct: 146 SRVKIITDSAYVKDGITKWIHGWKVRGWKKSDGNTVLNVDLWKRLDAARQNRDVTWQWIK 205 Query: 123 GHAGHPENERCDELARAA 140 GHAGH NE+ D LAR A Sbjct: 206 GHAGHAGNEQADRLARNA 223 >UniRef50_B7JVG1 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CYAP8 Length = 163 Score = 154 bits (389), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 76/145 (52%), Positives = 92/145 (63%), Gaps = 1/145 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K+V I+TDG+C GNPG GGYG +L Y K S G+ TTNNRME+MAAIV LE L Sbjct: 6 KKVLIYTDGACSGNPGSGGYGTVLIYNNHRKELSGGFRLTTNNRMEMMAAIVGLETLTIK 65 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L TDS+Y+ IT+ W WK GWK K+ KN DLW++L QH++ + WV Sbjct: 66 CAVTLYTDSRYLVDAITKGWAKKWKANGWKRNAKENAKNPDLWEKLLDLCSQHEVDFVWV 125 Query: 122 KGHAGHPENERCDELARAAAMNPTL 146 KGHAGH ENE CD LA A+ L Sbjct: 126 KGHAGHQENEYCDRLAVRASQQTNL 150 >UniRef50_A9WK52 Ribonuclease H n=11 Tax=Bacteria RepID=A9WK52_CHLAA Length = 264 Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/152 (49%), Positives = 97/152 (63%), Gaps = 2/152 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V ++TDGS LGNPGPGGYG +LRY + + G+ TTNNRMELMA IV L ALK Sbjct: 109 VMMYTDGSALGNPGPGGYGVVLRYNDHYQELTGGFRLTTNNRMELMACIVGLRALKRPVS 168 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V L +DS+YV + WIH W+ + W ++ +PVKN DLW L HQ+++ WV G Sbjct: 169 VRLHSDSRYVVDAFRKGWIHRWQAQNWMRSETEPVKNADLWAELRLLCEGHQVEFVWVPG 228 Query: 124 HAGHPENERCDELARAAAMNPTL-EDTGYQVE 154 H G P+NERC ELA AAA P L D ++++ Sbjct: 229 HQGVPDNERCHELAIAAAARPDLPPDVAFEMQ 260 >UniRef50_A3DD79 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CLOTH Length = 147 Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 76/137 (55%), Positives = 96/137 (70%), Gaps = 1/137 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C GNPG GG+GAIL Y EK S TTNNRMEL+AAI AL+ LKE Sbjct: 1 MKKVSIYTDGACSGNPGDGGWGAILIYGNHEKEVSGFEKDTTNNRMELVAAINALKMLKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 CEV L +DS Y+ G Q W+ WKK GWKT++K+ VKN++LWQ LD H+I+W Sbjct: 61 PCEVDLYSDSAYLVNGFLQNWVEKWKKNGWKTSNKEEVKNMELWQELDRLSNIHKIRWIK 120 Query: 121 VKGHAGHPENERCDELA 137 VKGH+ + N RCD+LA Sbjct: 121 VKGHSDNEYNNRCDKLA 137 >UniRef50_B7J4E2 Ribonuclease H n=2 Tax=Acidithiobacillus ferrooxidans RepID=RNH_ACIF2 Length = 158 Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 70/134 (52%), Positives = 92/134 (68%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K +E+FTDG C GNPG G +G LR G+E+ TTNNRMEL AA+ LEALK Sbjct: 4 KIIELFTDGGCRGNPGIGAWGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLEALKRP 63 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 V + +DS+Y+R G+TQW+ W++RGW+TA VKN D+W+ L A +HQ++WEWV+ Sbjct: 64 SAVRVISDSRYLRDGMTQWLAGWQRRGWRTAGGDAVKNRDIWELLAAVAARHQVQWEWVR 123 Query: 123 GHAGHPENERCDEL 136 GH+GH ENER D L Sbjct: 124 GHSGHIENERVDAL 137 >UniRef50_C8X6F1 Ribonuclease H n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X6F1_NAKMY Length = 235 Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 68/136 (50%), Positives = 93/136 (68%), Gaps = 1/136 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKT-FSAGYTRTTNNRMELMAAIVALEALKE 61 +++++++DG+C GNPGPGG+GA++R G+ S G TTNNRMEL A + AL +L Sbjct: 4 QRIQVWSDGACRGNPGPGGWGALIRVPGQPDVELSGGEPATTNNRMELRAVVEALRSLPA 63 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 ++ + DS YV GIT+W+ W++ GW T K+PVKNVDLWQ LD +H + W+WV Sbjct: 64 GSQLTVHADSTYVLNGITKWLAGWRRNGWLTGSKQPVKNVDLWQDLDEQANRHTVDWQWV 123 Query: 122 KGHAGHPENERCDELA 137 KGHAG P NER D LA Sbjct: 124 KGHAGDPGNERADALA 139 >UniRef50_C2FU18 Ribonuclease H n=2 Tax=Sphingobacterium spiritivorum RepID=C2FU18_9SPHI Length = 169 Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/154 (50%), Positives = 104/154 (67%), Gaps = 18/154 (11%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILR---------YRGR--EKTFSAGYTRTTNNRMEL 49 ML +E++TDG+ GNPGPGGYG ILR ++G+ EKTFS G+ RTTNNRMEL Sbjct: 1 MLPMIELYTDGASSGNPGPGGYGTILRTRYSGENEAFKGKLIEKTFSEGFRRTTNNRMEL 60 Query: 50 MAAIVALEALKE-HCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 MA I+ LEALK +V + +DS+YV I +W++ W ++G++ KN DLW RL Sbjct: 61 MAVIIGLEALKSPQQQVTIYSDSKYVIDAIDKKWVYGWIQKGFQGK-----KNKDLWIRL 115 Query: 108 DAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 + HQ++ WVKGHAGHP+NERCD+LA AA+ Sbjct: 116 MKSYKLHQVRLVWVKGHAGHPDNERCDQLAVAAS 149 >UniRef50_C9KMB8 Ribonuclease HI (Fragment) n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMB8_9FIRM Length = 172 Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/139 (54%), Positives = 92/139 (66%), Gaps = 3/139 (2%) Query: 7 IFTDGSCLGNP-GPGGYGAILR--YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 I+TDGSCL NP GPGG+ A++R G G TTNNRMEL AAI AL K Sbjct: 31 IYTDGSCLRNPDGPGGWAAVIREVATGVVTELHEGSPSTTNNRMELSAAIAALGFPKHPA 90 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 +V L TDSQY++ GIT+W+ WK+RGWK AD +PV N DLWQ LDA +H + + WVKG Sbjct: 91 KVALYTDSQYLKNGITKWMSGWKRRGWKKADGQPVLNQDLWQELDALYSRHDVTFHWVKG 150 Query: 124 HAGHPENERCDELARAAAM 142 H G NERCD LA++ AM Sbjct: 151 HVGVELNERCDRLAKSEAM 169 >UniRef50_C9LX49 Ribonuclease H n=2 Tax=Selenomonas RepID=C9LX49_9FIRM Length = 234 Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 2/134 (1%) Query: 7 IFTDGSCLGNP-GPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 ++TDGSCL NP GPGG+ + G E +T S G TTNNRME+ AAI AL L + Sbjct: 94 VYTDGSCLRNPNGPGGWAVCIVRPGEEMETLSGGNPSTTNNRMEMTAAIEALRHLPKREP 153 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 ++LSTDSQY++ GIT+WI +WK+RGWK AD PV N +LWQ LD + I + WVKGH Sbjct: 154 IVLSTDSQYLKNGITKWIFSWKRRGWKKADGTPVLNQELWQELDGLIAGRSIIFRWVKGH 213 Query: 125 AGHPENERCDELAR 138 AGH NE CD LA+ Sbjct: 214 AGHKYNEICDMLAK 227 >UniRef50_A5CEP5 Ribonuclease H n=33 Tax=cellular organisms RepID=RNH_ORITB Length = 168 Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/133 (52%), Positives = 89/133 (66%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V+I+TDG+C NPGPGG+G L Y+ EK TTNNRMEL A I AL LK + Sbjct: 14 VKIYTDGACSHNPGPGGWGVYLSYKNHEKKVYGSNINTTNNRMELTATIEALRLLKHSYK 73 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L TDSQYV+ GIT+WI W K W+T++K+ V NVDLWQ L + +HQ+ W WV+GH Sbjct: 74 VELYTDSQYVQMGITKWIKKWIKNNWETSNKQLVCNVDLWQLLYTLIQKHQVSWHWVRGH 133 Query: 125 AGHPENERCDELA 137 +G+ NE D+LA Sbjct: 134 SGNIGNEIADKLA 146 >UniRef50_A4XKQ3 Ribonuclease H n=2 Tax=Bacteria RepID=RNH_CALS8 Length = 145 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 1/139 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C NPGPGG+ AIL Y+G +K TTNNRMEL A I L+ALKE Sbjct: 1 MKEVVIYTDGACSKNPGPGGWCAILIYKGIKKVLKGFEENTTNNRMELKAIIEGLKALKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+V + TDS Y+ I Q WI W+K WKT++K+ VKN+DLWQ L L H +K+E Sbjct: 61 PCKVTVYTDSAYIVNAINQNWIGKWQKNNWKTSEKEEVKNIDLWQELLEFLKVHNVKFEK 120 Query: 121 VKGHAGHPENERCDELARA 139 VKGH+ N CDE+AR+ Sbjct: 121 VKGHSTDTLNNMCDEIARS 139 >UniRef50_Q2Z0V7 Putative Ribonuclease HI n=1 Tax=Pseudomonas phage EL RepID=Q2Z0V7_9CAUD Length = 163 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 96/146 (65%), Gaps = 1/146 (0%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 I+TDGS LGNPGPGGYG +Y+G E + S GY +TTNNR ELM+ I ALE + +V Sbjct: 12 IYTDGSALGNPGPGGYGVYAKYKGEEFSLSKGYYKTTNNRQELMSVIAALEEFGPNIKVD 71 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADK-KPVKNVDLWQRLDAALGQHQIKWEWVKGHA 125 + TDSQYV + T+W+ W + W + +PVKN DL + L+ L ++++K+ WVKGH+ Sbjct: 72 IFTDSQYVIKCATKWMRGWIRNNWMGYNSGQPVKNRDLLEVLNELLKKNKVKFHWVKGHS 131 Query: 126 GHPENERCDELARAAAMNPTLEDTGY 151 G NE+ D+LA+ AA NP D Y Sbjct: 132 GDEGNEKADQLAKDAANNPEAHDMEY 157 >UniRef50_B2S2V0 Ribonuclease H n=4 Tax=Bacteria RepID=RNH_TREPS Length = 169 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 80/152 (52%), Positives = 96/152 (63%), Gaps = 15/152 (9%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYR-------GREKTFSAGYTRT------TNNRMELMA 51 + ++TDG+CLGNPGPGG+ L G+ +A +TR+ TNNRMEL A Sbjct: 7 LTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTRSGSAYPSTNNRMELCA 66 Query: 52 AIVAL-EALKEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 I AL EA E V++ TDSQYVR+GITQWIH WK GWKTA K+PVKN DLW+ L A Sbjct: 67 VINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWEALSA 126 Query: 110 ALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 ++W WVKGHAG P NE CD LA AA Sbjct: 127 LADALSVEWRWVKGHAGDPYNELCDRLATDAA 158 >UniRef50_Q17XJ7 Ribonuclease H n=15 Tax=Campylobacterales RepID=RNH_HELAH Length = 143 Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 5/140 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 ++++EIF DGS LGNPGPGGY AILRY+ +EK S G TTNNRMEL A AL+ LK Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEKFTTNNRMELRALNEALKILKR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C + L +DSQYV Q I W+ W+K+ + VKNVDLW+ H I W+ Sbjct: 61 PCHITLYSDSQYVCQAINVWLIGWQKKNF-----AKVKNVDLWKEFLEVSKGHSIVAIWI 115 Query: 122 KGHAGHPENERCDELARAAA 141 KGH GH +NERCD LA+ A Sbjct: 116 KGHNGHAQNERCDSLAKLEA 135 >UniRef50_A6FRK2 Ribonuclease H n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FRK2_9RHOB Length = 186 Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 93/138 (67%), Gaps = 5/138 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAIL---RYRGREK-TFSAGY-TRTTNNRMELMAAIVALEAL 59 V I+TDG+C GNPGPGG+GAIL R+ G K + AGY TT NRME+MAAI ALE L Sbjct: 30 VVIYTDGACAGNPGPGGWGAILIDQRHGGASKHSEIAGYDIDTTGNRMEMMAAIQALEVL 89 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 V++ +D+QYV + IT+WI WK GWK VKN+DLWQRLD A QH ++W Sbjct: 90 GRGVNVLIWSDNQYVIRSITRWIKKWKANGWKVKGGAMVKNIDLWQRLDEAQAQHNVRWR 149 Query: 120 WVKGHAGHPENERCDELA 137 WVK H+G+ NE D+LA Sbjct: 150 WVKSHSGNVGNEMADKLA 167 >UniRef50_Q2RKU0 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_MOOTA Length = 152 Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 1/135 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C GNPGPGG+GA+L Y + K S TTN RME+ AAI AL LKE Sbjct: 1 MKEVTIYTDGACSGNPGPGGWGAVLIYGDKRKELSGAEPSTTNQRMEITAAIAALRVLKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C V L +DS Y+ Q W+ W++ GW T K+PV+N DLW+ L +HQ++W Sbjct: 61 PCRVHLYSDSAYLVNAFRQGWLARWERNGWLTVKKQPVENQDLWRELLQVASRHQVEWLK 120 Query: 121 VKGHAGHPENERCDE 135 VKGH+ +PEN RCDE Sbjct: 121 VKGHSDNPENNRCDE 135 >UniRef50_A9B1F3 Ribonuclease H n=2 Tax=Bacteria RepID=A9B1F3_HERA2 Length = 236 Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/151 (48%), Positives = 93/151 (61%), Gaps = 3/151 (1%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +F+DG GNPGPGGYG +LR + + G+ RTTNNRMELM I L+AL + Sbjct: 86 KVVLFSDGGSDGNPGPGGYGVVLRSGSEMRELTGGFARTTNNRMELMGVITGLQALSQPS 145 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 +V++ +DS YV G+ + W W K GW+T PVKN DLWQ+L H I+W V Sbjct: 146 KVVVYSDSAYVINGMHKGWAERWSKNGWRTT-TGPVKNPDLWQQLLELAQGHTIEWVQVP 204 Query: 123 GHAGHPENERCDELARAAAMNPTLE-DTGYQ 152 GHAG +NERCD LA AA P L D GY+ Sbjct: 205 GHAGVKDNERCDRLAVQAAHQPNLPIDQGYR 235 >UniRef50_C4V6H3 Ribonuclease H n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V6H3_9FIRM Length = 217 Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/139 (53%), Positives = 91/139 (65%), Gaps = 4/139 (2%) Query: 7 IFTDGSCLGNPG-PGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 I TDGSCL NPG GG+ A++ G + S G TTNNRMEL AA++AL A+ E Sbjct: 76 IHTDGSCLRNPGGAGGWAAVIETAATGAVEERSGGAPETTNNRMELTAALMALSAVPEGA 135 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 V L TDSQY++ T+ W+ WKKRGWK AD +PV N DLW +LD A +++ WVK Sbjct: 136 RVALYTDSQYLKNAFTKFWLPAWKKRGWKKADGEPVLNQDLWVQLDVAFAARHVQFHWVK 195 Query: 123 GHAGHPENERCDELARAAA 141 GHAG P NERCD LARA A Sbjct: 196 GHAGDPRNERCDALARAEA 214 >UniRef50_Q5N0R7 Ribonuclease H n=3 Tax=Cyanobacteria RepID=Q5N0R7_SYNP6 Length = 261 Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 71/146 (48%), Positives = 97/146 (66%), Gaps = 5/146 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + ++TDG+C GNPGPGG+G +++ G + TTNNRMEL AAI ALE ++H Sbjct: 8 LRLYTDGACTGNPGPGGWGVQIQFADGTVQELGGRDAATTNNRMELQAAIAALEFWRDHS 67 Query: 64 E---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + V L TDS+YV +GITQW+ W+++GWKTA KPV N DLW LD L +W++ Sbjct: 68 DQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPVLNQDLWMHLD-DLNSPAAQWQY 126 Query: 121 VKGHAGHPENERCDELARAAAMNPTL 146 V+GH+G P NERCD++AR+ A L Sbjct: 127 VRGHSGDPGNERCDQIARSFAQQRPL 152 >UniRef50_Q8DM24 Ribonuclease H n=27 Tax=Cyanobacteria RepID=RNH_THEEB Length = 159 Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/136 (54%), Positives = 92/136 (67%), Gaps = 5/136 (3%) Query: 7 IFTDGSCLGNPGPGGYGAILRYR-GREKTFSAGYTRTTNNRMELMAAIVALEA---LKEH 62 I+TDG+C GNPGPGG+G ++ + G + TTNNRMEL AAI AL+A L Sbjct: 7 IYTDGACEGNPGPGGWGVVIYFTDGSVHELGGHHPATTNNRMELQAAIEALKAWRQLAPG 66 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + L TDS+YV +GIT+WIH+WK+RGWKTA KKPV N DLWQ LD AL ++W V+ Sbjct: 67 SAIALYTDSEYVLRGITEWIHHWKRRGWKTAAKKPVLNQDLWQELD-ALNDPLVQWHHVR 125 Query: 123 GHAGHPENERCDELAR 138 GH G NERCD +AR Sbjct: 126 GHRGDVGNERCDLIAR 141 >UniRef50_A6GW41 Ribonuclease HI n=13 Tax=Bacteria RepID=A6GW41_FLAPJ Length = 159 Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 10/159 (6%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVALEA 58 M QV I+TDG+ GNPGPGGYG ++ G +K F G+ TTNNRMEL+A IV LE Sbjct: 1 MNYQVHIYTDGAAKGNPGPGGYGVVMELVGTAFKKEFYEGFRHTTNNRMELLAVIVGLEK 60 Query: 59 LKE-HCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 LK + +V++ +DS+YV + +W+ W+K+G+K KN DLW+RL +HQ+ Sbjct: 61 LKNPNMKVLVVSDSKYVVDSVEKKWVLGWEKKGFKDR-----KNSDLWKRLLIIYRKHQV 115 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLE-DTGYQVE 154 ++W+KGH HP+NERCD+LA A+ TL D Y+ E Sbjct: 116 DFKWIKGHNSHPQNERCDQLAVFASNQKTLSVDAFYEKE 154 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/142 (49%), Positives = 90/142 (63%), Gaps = 7/142 (4%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 M + + ++ DG+C GNPG GG+GA ++ +G K F G TTNNRMEL AAI + Sbjct: 1 MSQTITLYVDGACRGNPGLGGWGAYVITEQGEHKLF-GGEPDTTNNRMELTAAIEGISFC 59 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 ++I+ TDS YV+QGIT+WIH WKK+ WK VKN DLWQ+LDA I+W Sbjct: 60 PPDAQLIVWTDSNYVKQGITEWIHGWKKKNWKD-----VKNPDLWQKLDAVCAGRNIEWN 114 Query: 120 WVKGHAGHPENERCDELARAAA 141 W+KGHAGH NE D+LA A Sbjct: 115 WIKGHAGHAGNEMADQLANLGA 136 >UniRef50_B3EH35 Ribonuclease H n=6 Tax=Bacteria RepID=RNH_CHLL2 Length = 146 Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 69/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M K+V I+TDG+C GNPG GG+GA++ Y + S TTNNRMEL AAI L+ALK Sbjct: 1 MKKRVTIYTDGACSGNPGRGGWGALMMYGTVNRELSGYEPATTNNRMELTAAIEGLDALK 60 Query: 61 EHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E C V L +DS Y+ + Q W+ W W T+ KK V+N+DLW+++ + HQ+ + Sbjct: 61 EPCVVDLYSDSAYLVNALNQGWLKRWTTNNWTTSAKKSVENIDLWKKILKLVTLHQVTFH 120 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 VKGH+ +P N RCDELAR A N Sbjct: 121 KVKGHSDNPFNNRCDELARQAIKN 144 >UniRef50_Q9RVX2 Ribonuclease H n=1 Tax=Deinococcus radiodurans RepID=Q9RVX2_DEIRA Length = 179 Score = 138 bits (347), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 69/134 (51%), Positives = 86/134 (64%), Gaps = 1/134 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VE+++DG+C G GG+ ILRY RE S TTNNRMEL + L L+ C+ Sbjct: 37 VELYSDGACDTTKGHGGWATILRYGERELVLSGNEENTTNNRMELRGLLEGLRTLRRPCQ 96 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDSQY+R+ T WI NW++ GWKTA K+PVKN DLW+ L H + + WVKG Sbjct: 97 VKVITDSQYLRKAFTDGWILNWQRNGWKTASKEPVKNQDLWEELIELAKVHALTFLWVKG 156 Query: 124 HAGHPENERCDELA 137 HAGH ENER DELA Sbjct: 157 HAGHGENERVDELA 170 >UniRef50_A5FZ26 Ribonuclease H n=11 Tax=Bacteria RepID=RNH_ACICJ Length = 160 Score = 138 bits (347), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/136 (55%), Positives = 92/136 (67%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+TDG C NPG GG+ A+LR+ E+ S TTNNRMEL AA ALEALK C Sbjct: 9 VEIWTDGGCKPNPGAGGWAAVLRFGAAEREMSGAERETTNNRMELTAAAAALEALKRPCR 68 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L TDS+Y+R GIT+W W +R W+ A PV N +LWQR+ AA H+I+W WV+GH Sbjct: 69 VKLHTDSEYLRNGITRWHTGWVRRNWRNAQGDPVANYELWQRVLAAAKPHEIEWIWVRGH 128 Query: 125 AGHPENERCDELARAA 140 AG P NER D+LA AA Sbjct: 129 AGDPMNERVDQLATAA 144 >UniRef50_A5US20 Ribonuclease H n=2 Tax=Bacteria RepID=A5US20_ROSS1 Length = 214 Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 1/137 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +EIFTDG+C GNPGPGG+ A++ G RTTNNRMEL AA+ AL + + Sbjct: 2 IEIFTDGACRGNPGPGGWAAVIVQNGEVIEIGGAEERTTNNRMELRAAVEALRRVPPNAP 61 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L+TDS+Y+ G T W+ WKKR W T ++ PV++ DLW+ LD AL ++ W++V+GH Sbjct: 62 VRLTTDSEYLLHGATHWLLLWKKRNWLTTEQTPVEHRDLWEELD-ALADQRVTWQYVRGH 120 Query: 125 AGHPENERCDELARAAA 141 +G P NER + LA+A A Sbjct: 121 SGDPWNERANTLAQAYA 137 >UniRef50_A4JFN6 Ribonuclease H n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JFN6_BURVG Length = 177 Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 90/143 (62%), Gaps = 9/143 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA----LK 60 VE +TDG+C GNPGPGG+GAI + GRE F G TTNN MEL + LE+ L Sbjct: 13 VEAWTDGACSGNPGPGGWGAITQVGGREARFFGGMNPTTNNVMELFGVLFVLESTLGRLP 72 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 + + TDSQYV++G+T+W+ WK++GW+ AD K V N + WQR DAAL H+ Sbjct: 73 PGSTLSVRTDSQYVQKGVTEWLAGWKRKGWRKADGKLVLNAEWWQRTDAALIAHRAAGNT 132 Query: 116 IKWEWVKGHAGHPENERCDELAR 138 + WV+GHAG NER D LAR Sbjct: 133 VNVLWVRGHAGDELNERADALAR 155 >UniRef50_B0K9M0 Ribonuclease H n=14 Tax=Bacteria RepID=RNH_THEP3 Length = 155 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 87/146 (59%), Gaps = 6/146 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+TDG+C GNPGPGG+ A+L Y+G +K S TTNNRMEL A I L+ALK C+ Sbjct: 8 VEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENTTNNRMELKAVIEGLKALKRPCK 67 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V L +DS YV + W+ W+K W +DK PV+N DLW+ L HQ+ W VKG Sbjct: 68 VNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQDLWKELLEISKNHQVNWIKVKG 127 Query: 124 HAGHPENERCDELA-----RAAAMNP 144 HA + N CD LA R NP Sbjct: 128 HADNEYNNLCDRLATEQIKRNTRQNP 153 >UniRef50_B6JI04 Ribonuclease HI (RNase HI) n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JI04_OLICO Length = 255 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/144 (50%), Positives = 89/144 (61%), Gaps = 1/144 (0%) Query: 3 KQVEIFTDGSC-LGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K ++TDGS G G GG+ AI+R G +T NRME++AA+VALE L Sbjct: 109 KTAIVYTDGSAERGGKGRGGWAAIIRAGFDIVEIFGGAEASTINRMEIIAAVVALEILPA 168 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L TDS+Y+R GIT WI WK+ GW T ++PVKN DLW+RLDAA H + W+WV Sbjct: 169 GCVVKLHTDSKYLRNGITNWIDGWKRNGWLTVAREPVKNEDLWRRLDAARLSHTVTWKWV 228 Query: 122 KGHAGHPENERCDELARAAAMNPT 145 K H G NER DELA+ A N T Sbjct: 229 KAHVGIRLNERADELAKFARHNIT 252 >UniRef50_A5GAH5 Ribonuclease H n=6 Tax=Desulfuromonadales RepID=A5GAH5_GEOUR Length = 484 Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/138 (50%), Positives = 91/138 (65%), Gaps = 4/138 (2%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+ DGS + GPGGYG ILRY EK S +T+ RMEL AAI LEAL + Sbjct: 292 VEIYCDGSGRDS-GPGGYGVILRYGEHEKELSGFEAASTSQRMELTAAIRGLEALHKPRR 350 Query: 65 VILSTDSQYVRQGITQWIHNWKKRG-WKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + +DSQY+ +G+++W+H W + G +T D +KN DLWQ+L A H++ WEWV+G Sbjct: 351 VRVFSDSQYLVRGMSEWLHGWIRTGRLETPDA--LKNQDLWQKLSALSANHEVTWEWVRG 408 Query: 124 HAGHPENERCDELARAAA 141 H GHP NERCD LA+ AA Sbjct: 409 HDGHPFNERCDRLAKRAA 426 >UniRef50_B6JLP9 Ribonuclease H n=3 Tax=Helicobacter RepID=B6JLP9_HELP2 Length = 188 Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/139 (50%), Positives = 85/139 (61%), Gaps = 5/139 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K+++ F LGNPGPGGY AILRY+ +EK S G TTNNRMEL A AL+ LK Sbjct: 47 KKLKFFAMVLHLGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKILKRP 106 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+K Sbjct: 107 CHITLYSDSQYVCQAINVWLANWQKKNF-----SKVKNVDLWKEFLKVSKGHLIVAVWIK 161 Query: 123 GHAGHPENERCDELARAAA 141 GH GH ENERCD LA+ A Sbjct: 162 GHNGHAENERCDNLAKLEA 180 >UniRef50_C1D179 Putative ribonuclease H n=1 Tax=Deinococcus deserti VCD115 RepID=C1D179_DEIDV Length = 183 Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 67/136 (49%), Positives = 88/136 (64%), Gaps = 1/136 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++VE+++DG+C G GG+ IL+YRG+E S TTNNRMEL + L+ LK Sbjct: 38 EEVELYSDGACDTTQGHGGWATILKYRGQELVLSGNEEATTNNRMELRGLLEGLKVLKRP 97 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V + TDSQY+R+ T WI W++ GWKTA PVKN +LW+ L A H + + WV Sbjct: 98 CQVRVVTDSQYLRKAFTDGWILKWQRNGWKTAGGDPVKNRELWEELIAQARTHALTFIWV 157 Query: 122 KGHAGHPENERCDELA 137 KGHAGH ENER D LA Sbjct: 158 KGHAGHGENERVDVLA 173 >UniRef50_A2FNB2 RNase H family protein n=1 Tax=Trichomonas vaginalis RepID=A2FNB2_TRIVA Length = 280 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 83/141 (58%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K V+++TDG+C GNPGPGG+G + G G TTN RMELMAAI + Sbjct: 17 KPVDVYTDGACSGNPGPGGWGVFCQQNGNSYKLGGGSKDTTNQRMELMAAIEGISLFPRC 76 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + + TDS+YV GIT W+ WK RGWK +D V N++LW+RLD H + W+WVK Sbjct: 77 FSLNVYTDSKYVFNGITDWVRGWKSRGWKKSDGGKVLNLELWKRLDQVNSDHTVSWKWVK 136 Query: 123 GHAGHPENERCDELARAAAMN 143 GH+ + N D++A A N Sbjct: 137 GHSVNHGNNMADQIAVANIPN 157 >UniRef50_A9W185 Ribonuclease H n=9 Tax=Alphaproteobacteria RepID=RNH_METEP Length = 228 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 64/131 (48%), Positives = 81/131 (61%), Gaps = 1/131 (0%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 ++ DG C NPGPGG+ A+++ G TTNNRMEL AAI ALE E + Sbjct: 8 VYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFPEGAAIE 67 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 + DSQYV + +T+W+ WK RGW+TA PVKN+DL QRLDA ++W WV+GHAG Sbjct: 68 MRCDSQYVVKSVTEWMRGWKARGWRTA-TGPVKNIDLMQRLDALAAARDVRWTWVRGHAG 126 Query: 127 HPENERCDELA 137 NER D LA Sbjct: 127 EAGNERADRLA 137 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/131 (51%), Positives = 85/131 (64%), Gaps = 6/131 (4%) Query: 8 FTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 +TDG+C GNPG GG+GA++ G + G TTNNRMELM AI ALE + + Sbjct: 42 YTDGACRGNPGKGGFGAVVILPTGEQIDICGGEAHTTNNRMELMGAIAALENSPKALPIQ 101 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 + +DS YV +GI++W+ WKK+ WK VKNV+LWQRLD Q QI W+WVKGHAG Sbjct: 102 IWSDSSYVIKGISEWLAGWKKKHWKN-----VKNVELWQRLDKLCEQRQIDWQWVKGHAG 156 Query: 127 HPENERCDELA 137 H NE D+LA Sbjct: 157 HDGNEYADKLA 167 >UniRef50_A7FR34 Ribonuclease H n=11 Tax=Firmicutes RepID=RNH_CLOB1 Length = 149 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/143 (47%), Positives = 88/143 (61%), Gaps = 4/143 (2%) Query: 2 LKQVEIFTDGSCLGN---PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 +K+V I+TDG+C GN G YG +L Y +K + TTNN MEL A + AL Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60 Query: 59 LKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 LKE C + L +DS YV I Q W+ NWKK WKTA K PVKN +LW++LD L +H +K Sbjct: 61 LKEPCSIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120 Query: 118 WEWVKGHAGHPENERCDELARAA 140 + VKGH+ + N RCD+LA A Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143 >UniRef50_Q7V474 Possible ribonuclease HI n=12 Tax=Bacteria RepID=Q7V474_PROMM Length = 257 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/139 (48%), Positives = 94/139 (67%), Gaps = 5/139 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYR-GREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + V TDG+C GNPGPGG+GA+LR+ G + F TTNNRMEL AA+ LE LKE Sbjct: 7 RVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGYAPATTNNRMELQAALHVLEQLKE 66 Query: 62 ---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 H ++ + TDS+Y+ G+++W+ WK++GW+TA KPV N DLW+ LD A H + Sbjct: 67 LPCHPDLKIRTDSKYLIDGLSKWMAGWKRKGWRTAAGKPVLNQDLWRALDRARLDH-VPL 125 Query: 119 EWVKGHAGHPENERCDELA 137 +VKGH+G P+NER D++A Sbjct: 126 AYVKGHSGDPDNERVDQIA 144 >UniRef50_A7NII6 Ribonuclease H n=3 Tax=Bacteria RepID=A7NII6_ROSCS Length = 245 Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 89/144 (61%), Gaps = 1/144 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +FTDG G GGYG IL++R R K S G+ TTNNRME+ A I L ALK Sbjct: 95 KVVMFTDGCFDSESGSGGYGVILKHRDRTKEISGGFRETTNNRMEIRACIEGLRALKRPS 154 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 EV++ +DS+YV +++ W+ WK +GW +K +N DLW++L QH++++ WVK Sbjct: 155 EVVIFSDSKYVVDSMSKGWVQRWKDQGWMRNEKDQAENSDLWEQLLELCNQHRVEFRWVK 214 Query: 123 GHAGHPENERCDELARAAAMNPTL 146 GH ENERCD+LA AA L Sbjct: 215 GHNHTKENERCDQLASEAAKRSDL 238 >UniRef50_A7IEA7 Ribonuclease H n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IEA7_XANP2 Length = 245 Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 69/139 (49%), Positives = 90/139 (64%), Gaps = 2/139 (1%) Query: 5 VEIFTDGSCLGNPGPGGY-GAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + TDGSCLGNPGPGG+ G IL G +T + TTNNRMEL AA++AL AL Sbjct: 2 IAAHTDGSCLGNPGPGGWAGVILDADGTARTLTGFAPDTTNNRMELTAALMALGALPADV 61 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI-KWEWVK 122 +L DS+YV +G+ W+ + ++RGWKTA KPV N DLW++L AA + + + WV+ Sbjct: 62 PSVLFCDSEYVVKGLNTWLASRERRGWKTAQDKPVANADLWRQLSAAKVERPLAEIRWVR 121 Query: 123 GHAGHPENERCDELARAAA 141 GHAG+ NE D LARA A Sbjct: 122 GHAGNTMNETVDRLARAEA 140 >UniRef50_Q46HH3 Ribonuclease H n=5 Tax=Cyanobacteria RepID=RNH_PROMT Length = 161 Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/135 (49%), Positives = 90/135 (66%), Gaps = 5/135 (3%) Query: 9 TDGSCLGNPGPGGYGAILRYR-GREKTFSAGYTRTTNNRMELMAAIVALEALKE---HCE 64 TDG+C GNPGPGG+GA++R++ G E F TTNNRMEL AA+ LE LK Sbjct: 13 TDGACSGNPGPGGWGALIRFQDGSEIEFGGNSPETTNNRMELQAALFILEKLKNIKFAPS 72 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 + + TDS+Y+ G+ +W+ NWKK+GWKTA KPV N DLW+ LD +IK ++VKGH Sbjct: 73 LTIKTDSKYLIDGMDKWMPNWKKKGWKTASGKPVLNQDLWKALDHP-ELPKIKLQYVKGH 131 Query: 125 AGHPENERCDELARA 139 +G +N+R D +A A Sbjct: 132 SGEKDNDRVDAIAVA 146 >UniRef50_Q6MIM3 Ribonuclease H n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIM3_BDEBA Length = 263 Score = 131 bits (330), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/146 (45%), Positives = 95/146 (65%), Gaps = 6/146 (4%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKE- 61 + I++DG+C GNPGPGG+G+++ Y + + G TTNNRME+ AA+ AL+A+ Sbjct: 20 HIMIYSDGACSGNPGPGGWGSVILYPDNQVQELGDGEKSTTNNRMEMTAALEALKAVAHM 79 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD---AALG-QHQIK 117 V TDS Y+ +GITQW+H W++RGWKTA+ V N D+W+ L AA G Q +I+ Sbjct: 80 KVPVRFYTDSTYLIRGITQWVHGWRRRGWKTAEGGEVSNQDIWEDLSHVVAARGTQGKIE 139 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 W + +GH G P NERCD +A A + N Sbjct: 140 WHYSRGHVGIPGNERCDRIAVAFSKN 165 >UniRef50_B6BTS2 RNase H n=1 Tax=beta proteobacterium KB13 RepID=B6BTS2_9PROT Length = 149 Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 86/143 (60%), Gaps = 4/143 (2%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +I+TDGSC GNPGPGG+ I+ K S +TTNN+MEL AAI L EH Sbjct: 2 SFKIYTDGSCHGNPGPGGWAFIVVANDEVVKEKSGSMEKTTNNQMELSAAIQGLFYFNEH 61 Query: 63 CE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E V L TDS+YV GI WIH WKK W+T+ KKPVKN +LW+ LD + + W Sbjct: 62 VESKEVELFTDSKYVIDGINSWIHGWKKNNWRTSTKKPVKNEELWRTLDELNSKLTVNWI 121 Query: 120 WVKGHAGHPENERCDELARAAAM 142 WVKGH+G N++ D LA A + Sbjct: 122 WVKGHSGDIFNDKVDLLANYATL 144 >UniRef50_A5UB13 Ribonuclease H n=1 Tax=Haemophilus influenzae PittEE RepID=A5UB13_HAEIE Length = 117 Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 58/87 (66%), Positives = 67/87 (77%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQ+EIFTDGSCLGNPG GG GA+LRY+ EK S GY +TTNNRMEL A I AL LK Sbjct: 21 MQKQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLK 80 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKK 87 E C + L +DSQY++ GIT+WI NWKK Sbjct: 81 EPCLITLYSDSQYMKNGITKWIFNWKK 107 >UniRef50_Q2GDA1 Ribonuclease H n=2 Tax=Neorickettsia RepID=RNH_NEOSM Length = 151 Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/146 (43%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVALEALK 60 +++ I+TDG+CLGNPGPGG+ A++ RG EK S +TNN+MEL+A I ALE+ + Sbjct: 1 MEEYVIYTDGACLGNPGPGGWAAVIIQRGTNEKIISGREADSTNNKMELLAVIKALESFE 60 Query: 61 EHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + + V + TDS YV +GIT WI +W K W+ + VKN ++W RL H ++W Sbjct: 61 QKGKRVTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKEMWVRLHGIAAAHTVRWL 120 Query: 120 WVKGHAGHPENERCDELARAAAMNPT 145 WVK H G NE D +AR A + T Sbjct: 121 WVKAHNGDHYNEIVDRVARKEAASFT 146 >UniRef50_A6QCI9 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_SULNB Length = 147 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/139 (52%), Positives = 91/139 (65%), Gaps = 5/139 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 KQ+ +++DGS LGNPGPGGYG IL Y+G K + G TTNNRMEL I L+ LKE Sbjct: 7 KQITLYSDGSSLGNPGPGGYGGILEYKGSRKEYFGGEEETTNNRMELRGVIEGLKLLKEP 66 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C+V + +DS YV + I +W+ +W +R D K VKNVDLW+ A H + WV+ Sbjct: 67 CDVEVVSDSSYVVKAINEWLESWIRR-----DFKKVKNVDLWKAYIEAAAPHHVHGTWVR 121 Query: 123 GHAGHPENERCDELARAAA 141 GH GHPENERCDELAR A Sbjct: 122 GHDGHPENERCDELARNEA 140 >UniRef50_A5GWJ8 Ribonuclease H n=3 Tax=Synechococcus RepID=A5GWJ8_SYNR3 Length = 247 Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 5/139 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYR-GREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 V DG+C GNPGPGG+GA+LR+ GR + +TTNNRMEL A + LE L++ Sbjct: 16 VAAACDGACRGNPGPGGWGALLRFSDGRVEELGGSEAQTTNNRMELSACLALLERLQQLP 75 Query: 64 E---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + TDS+Y+ G T+WI+ WK++GW+TA V N DLW+ LDAA + Sbjct: 76 RAQGLAIRTDSKYLIDGFTRWINGWKRKGWRTASGSAVLNRDLWEALDAAR-LPDVALAH 134 Query: 121 VKGHAGHPENERCDELARA 139 VKGH+G P+NERCD +A A Sbjct: 135 VKGHSGDPDNERCDAIAVA 153 >UniRef50_D2XAD4 Ribonuclease H n=1 Tax=Marseillevirus RepID=D2XAD4_9VIRU Length = 141 Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 66/137 (48%), Positives = 83/137 (60%), Gaps = 2/137 (1%) Query: 6 EIFTDGSCLGNPGPGGYGAIL-RYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +I+TDGSCL NPG GGYG ++ R T S TTNN+ E A IVAL L E E Sbjct: 3 QIYTDGSCLKNPGKGGYGVVITRNDEVLSTLSGHMAETTNNQAEAAACIVALSWLSEPTE 62 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V + +DS+YV GIT+WI WKK GW+TA+KKPV N + W LD +H++ W WV Sbjct: 63 VEICSDSKYVVDGITKWIGGWKKNGWRTANKKPVLNKEFWLELDRLNSKHKVTWTWV-AR 121 Query: 125 AGHPENERCDELARAAA 141 + H N D+LA AA Sbjct: 122 SSHEFNVMADKLANDAA 138 >UniRef50_Q92S39 Probable ribonuclease HI protein n=1 Tax=Sinorhizobium meliloti RepID=Q92S39_RHIME Length = 169 Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 67/147 (45%), Positives = 88/147 (59%), Gaps = 12/147 (8%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFS----AGYT--RTTNNRMELMAAIVALEALK 60 + TDG+C NPGPGG+GA+L+ + +G T TTNNRMEL A + L LK Sbjct: 17 VHTDGACRNNPGPGGWGAVLQLEEEGEIIKEKDLSGTTISETTNNRMELSAVLGGLRRLK 76 Query: 61 EHC-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA---ALGQHQI 116 + + + +DS+YV G++ W+ WK+ GW+ ADK V N+DLWQ LD LG I Sbjct: 77 DKTIPITVRSDSKYVVNGMSTWLEGWKRNGWRKADKTTVLNMDLWQELDQLQETLG--PI 134 Query: 117 KWEWVKGHAGHPENERCDELARAAAMN 143 W WVKGH+G P N+RCD LA A N Sbjct: 135 SWVWVKGHSGDPMNDRCDRLANVAIDN 161 >UniRef50_Q2S3C1 RNase H n=3 Tax=Bacteria RepID=Q2S3C1_SALRD Length = 194 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 84/144 (58%), Gaps = 4/144 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKT---FSAGYTRTTNNRMELMAAIVALE 57 + +V I+TDG+C GNPGPGG+ AIL + G TTNNRMEL AA+ AL Sbjct: 46 FMNEVTIYTDGACSGNPGPGGWAAILLPDDDSDATDPLTGGEPHTTNNRMELTAALEALR 105 Query: 58 ALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 AL + V L TDS+Y+ + + W+ +W+ W+T+ VKN DLW+ L +H++ Sbjct: 106 ALDDRSRVALHTDSEYLSKAFNEGWLDSWQDNNWQTSSNDDVKNQDLWKALLEEADRHEV 165 Query: 117 KWEWVKGHAGHPENERCDELARAA 140 W WVKGHA N DELA AA Sbjct: 166 DWVWVKGHADDELNIMADELAVAA 189 >UniRef50_C1A5K0 Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5K0_GEMAT Length = 211 Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 14/151 (9%) Query: 5 VEIFTDGSCLGN----PGPGGYGAILRYRGREKT-----FSAGYTRTTNNRMELMAAIVA 55 V ++ D SCLGN PGG GA++ +R + T A TTNNRM L + I Sbjct: 8 VAVYADESCLGNGKSGDTPGGLGALIEFRKNDGTVLRFDLWASEPNTTNNRMALRSVIDT 67 Query: 56 LEALK---EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 EA+ V+ +TDS+Y+ G++ W+ W RGW+ D V+NV+LWQ+ AA+ Sbjct: 68 FEAMSRKGNRLSVLFTTDSRYIVDGMSSWVRGWMSRGWRRKDGA-VENVELWQQAVAAIA 126 Query: 113 QHQIKWEWVKGHAGHPENERCDELA-RAAAM 142 HQ +W WVKGHAGHP+NE + LA RAAA+ Sbjct: 127 THQTQWAWVKGHAGHPQNEYANYLATRAAAV 157 >UniRef50_B4UMK8 Ribonuclease H n=4 Tax=Anaeromyxobacter RepID=RNH_ANASK Length = 183 Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 65/143 (45%), Positives = 88/143 (61%), Gaps = 10/143 (6%) Query: 8 FTDGSCLGNPG-PGGYGAILRYRGREKTFSAGYTR--------TTNNRMELMAAIVALEA 58 F+DGS L NPG PGG G ++ R R + G TR TNNRMEL A + ALE Sbjct: 9 FSDGSALVNPGGPGGTGFVVLDRAR-PAYRFGGTRWVEDGPNAVTNNRMELRAVLEALEG 67 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 L +V + +DS+YV +++WIH W+K+GW+TA +PV N DL + LDA +++ Sbjct: 68 LPGGEQVEVISDSRYVVDALSRWIHGWRKKGWRTASGEPVLNRDLIEALDARASALSVRY 127 Query: 119 EWVKGHAGHPENERCDELARAAA 141 WV+GH GH NE D+LA+AAA Sbjct: 128 TWVRGHDGHAVNEVVDQLAQAAA 150 >UniRef50_UPI0001C31642 Ribonuclease H n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31642 Length = 175 Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 63/145 (43%), Positives = 88/145 (60%), Gaps = 9/145 (6%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYR--GREKTFSAGYTRTTNNRMELMAAIVALEA 58 +L + ++TDG+C GNPGPGG+ AI+ G +S G TTNNRME AA+ + + Sbjct: 22 LLGEALVWTDGACKGNPGPGGWAAIVVPADGGEPLEYSGGDPATTNNRMEYTAALEGMRS 81 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IK 117 L V + TDSQ + +T+WI WK++GWKTA PVKN DL LD+ +G+H+ ++ Sbjct: 82 LPAGSRVCIVTDSQLMLNSMTRWITGWKRKGWKTASGDPVKNQDLVMALDSEVGRHETVR 141 Query: 118 WEWVKGHA---GHPE---NERCDEL 136 W WV+GH GH N+R D L Sbjct: 142 WHWVRGHETGDGHAHKALNDRADRL 166 >UniRef50_A8ZXF3 Ribonuclease H n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXF3_DESOH Length = 192 Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 8/149 (5%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE-- 64 ++TDGS +GNPGPGGYG +++ G+E S GY TTNNRMELMA IVAL L++ E Sbjct: 44 VYTDGSAIGNPGPGGYGVVIK-GGKE--ISGGYKLTTNNRMELMAVIVALRELQDDDERP 100 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 +++ +DS+YV I + W+ WK+ W + V N DLW++ + +++ WVKG Sbjct: 101 IVIYSDSKYVVDSINKGWVLGWKENKWAVTNGTRV-NSDLWKKFLRLRSKVDVEFRWVKG 159 Query: 124 HAGHPENERCDELARAAAMNPTLE-DTGY 151 HA P N + D+LA +AA L D GY Sbjct: 160 HATDPLNIKADQLANSAARQKRLSHDKGY 188 >UniRef50_C0QZB8 Ribonuclease H n=2 Tax=Brachyspira RepID=C0QZB8_BRAHW Length = 163 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 82/136 (60%), Gaps = 2/136 (1%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT--RTTNNRMELMAAIVALEALKE 61 + I+TDG C GNPG G + AIL G + TTNNRME+ AAI ALE LK Sbjct: 5 NIIIYTDGGCRGNPGLGAWAAILISEKHNLRLEIGESEDNTTNNRMEMKAAIKALERLKH 64 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + L +DS Y+ G+T+WI++W+K W +DKKPV+N + W RL +H I++ V Sbjct: 65 SHSIKLHSDSAYLVNGMTKWIYSWQKNNWVKSDKKPVENKEYWLRLIELSKKHDIEFIKV 124 Query: 122 KGHAGHPENERCDELA 137 KGH+ + EN R DE+ Sbjct: 125 KGHSTNKENNRADEIV 140 >UniRef50_D0JBH5 Ribonuclease HI n=3 Tax=Flavobacteria RepID=D0JBH5_BLASB Length = 160 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 11/153 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRY----RGREKTFSAGYTRTTNNRMELMAAIVAL 56 M +++ I+TDGS GNPGPGGYG + K S G+ TTNNRMEL+A IV L Sbjct: 1 MNQKIHIYTDGSSKGNPGPGGYGIFIETTIGNSYNRKIISEGFRYTTNNRMELLAVIVGL 60 Query: 57 EAL-KEHCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 E + K +++ TDS+Y+ I WIH WKK + KNVDLW+R ++ Sbjct: 61 EKIEKRKQNIVVFTDSKYIVNTIQNNWIHQWKKNNFFQK-----KNVDLWKRFLKIYNKN 115 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 I ++W+K H H N+ CD L+ A+ L+ Sbjct: 116 IIDFQWIKSHNNHYINDYCDRLSVEASKRKILK 148 >UniRef50_C3MAD4 Putative ribonuclease HI n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAD4_RHISN Length = 278 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/161 (43%), Positives = 88/161 (54%), Gaps = 14/161 (8%) Query: 5 VEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-H 62 + +FTDG+C NPGPGG+G A+ R R + G TTNNRMEL A + +E K Sbjct: 107 LHVFTDGACEPNPGPGGWGVAVYRDRAEIASDHGGNADTTNNRMELTALLKGIEVAKALG 166 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKP------VKNVDLWQRLDAALGQ-HQ 115 V++ +DS+Y G W H WKK+ WK A K VKNV+LWQ +DAAL + Q Sbjct: 167 APVVVWSDSRYCVDGCNDWRHGWKKKEWKKAGPKASAKNQEVKNVELWQAIDAALERADQ 226 Query: 116 IKWEWVKGHAGHPENERCDEL-----ARAAAMNPTLEDTGY 151 I W KGHAG NER DEL A ++P E Y Sbjct: 227 ITIRWCKGHAGIVGNERADELSNLGVASLVGVSPLREPVDY 267 >UniRef50_C3Y169 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y169_BRAFL Length = 203 Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 86/148 (58%), Gaps = 6/148 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYT-RTTNNRMELMAAIVALEALKEH- 62 ++TDG C N G I Y G E+ SA R TNNR E+ AA A+E+ KE Sbjct: 52 VYTDGCCTDNGFHGASAGIGVYWGPGHERNMSAKLPGRQTNNRAEIHAARYAIESAKEMG 111 Query: 63 -CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 ++ L TDSQ++ GIT+WIH WKK GWK + KPV+N + +Q LD+AL ++W V Sbjct: 112 LAKISLHTDSQFLINGITKWIHGWKKNGWKLSTGKPVQNKEDFQSLDSALQGIDVQWVHV 171 Query: 122 KGHAGHPENERCDELARAAAMNPTLEDT 149 +GH G P NE D LA+ + +LED Sbjct: 172 RGHVGVPGNEAADGLAKEGS-RKSLEDV 198 >UniRef50_Q1DA37 Ribonuclease H n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DA37_MYXXD Length = 255 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/144 (43%), Positives = 81/144 (56%), Gaps = 11/144 (7%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHCEV 65 +F DG+C GNPGPGG+G+I+ T G+ TTNNRMEL A AL L+ Sbjct: 8 VFADGACSGNPGPGGWGSIIVTPDGLVTELGGHEPETTNNRMELTAVGKALRHLERAPGP 67 Query: 66 I-LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--------- 115 I + TDS YV QG T+W W +RGWKTA+ V N W+RL A L Q + Sbjct: 68 IHIHTDSTYVIQGATKWAFGWSRRGWKTAEGGEVANAIYWKRLMALLAQRKESHAAEAAA 127 Query: 116 IKWEWVKGHAGHPENERCDELARA 139 + W +++GH G P NER D +A A Sbjct: 128 VAWFYIRGHVGVPGNERVDAIAVA 151 >UniRef50_B4SE10 Ribonuclease H n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SE10_PELPB Length = 146 Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 56/106 (52%), Positives = 70/106 (66%), Gaps = 2/106 (1%) Query: 37 AGYT-RTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTAD 94 AGY+ TTNNRMEL AAI ALEALKE C V L +DS Y+ I + W+ W WKT+ Sbjct: 36 AGYSPATTNNRMELSAAIEALEALKEPCRVDLYSDSSYLVNAINEGWLKRWTINNWKTST 95 Query: 95 KKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAA 140 KK V+N+DLW+++ L H I + VKGH+ +P N RCD LAR A Sbjct: 96 KKNVENIDLWKKILKLLTLHTITFHKVKGHSDNPYNNRCDTLAREA 141 >UniRef50_A8HXQ9 Ribonuclease H n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8HXQ9_AZOC5 Length = 186 Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 2/132 (1%) Query: 7 IFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 ++ DGS L NPGP G+ ++ G +TF+ TNN+MEL AAI AL L Sbjct: 27 VYADGSSLQNPGPAGWAVLVIPPHGGPQTFAGSEPWATNNQMELRAAIEALNVLPMDAAG 86 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL-DAALGQHQIKWEWVKGH 124 ++ DS+YV +G++ W W++RGW+ + +PV N DLW+ L + + +++ WV+GH Sbjct: 87 VIRCDSEYVVKGVSDWRSGWERRGWRNSKGQPVANADLWRTLYRLSDDRPGVRFAWVRGH 146 Query: 125 AGHPENERCDEL 136 AG P NE D L Sbjct: 147 AGDPGNELADML 158 >UniRef50_C7NFY8 RNase HI n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFY8_KYTSD Length = 291 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 81/141 (57%), Gaps = 8/141 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA---LKE 61 + DGS LGNPGP G+ Y + + G+ TNN ELMA + L+ L + Sbjct: 2 ITAAADGSALGNPGPAGWA---WYVDDDCWAAGGWPHGTNNMGELMAVLDLLQQTAHLDD 58 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 V+ DSQY I++W WK++GWK AD KPV N+DL + LD A+ ++ +EWV Sbjct: 59 DLHVL--CDSQYAINVISKWTPAWKRKGWKKADGKPVMNIDLVKALDEAMQGRRVTFEWV 116 Query: 122 KGHAGHPENERCDELARAAAM 142 KGHAGH NE DE AR AA+ Sbjct: 117 KGHAGHALNEAADERARNAAL 137 >UniRef50_C0VYC6 Prolyl aminopeptidase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VYC6_9ACTO Length = 662 Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 81/134 (60%), Gaps = 6/134 (4%) Query: 10 DGSCLGNPGPGGYGAILRYRGREKTFSAG-YTRTTNNRMELMAAIVALEALKEHCEVI-L 67 DGS L NPGP G+ + E T+ AG + TNN EL A + L++ E + + Sbjct: 8 DGSALKNPGPTGWAWAID----ESTWRAGGFKHGTNNIGELYAVLDLLKSTAHLDEPLHI 63 Query: 68 STDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGH 127 DS+YV +T+WIH WK++ WK AD PV NV+L Q +DA + ++ +EWV+GH+GH Sbjct: 64 LADSRYVIDSMTKWIHGWKRKDWKKADGSPVLNVELIQEIDALMQGRKVTFEWVRGHSGH 123 Query: 128 PENERCDELARAAA 141 NE DE ARAAA Sbjct: 124 DMNEFVDEKARAAA 137 >UniRef50_A9WMA2 Ribonuclease HI n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WMA2_RENSM Length = 290 Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 7/135 (5%) Query: 10 DGSCLGNPGPGGYGAILRYRGREKTFSAG-YTRTTNNRMELMAAIVALEALKEHCEVILS 68 DGS L NPGP G+ + E+T+ AG + TNN+ ELMA + A L Sbjct: 8 DGSALNNPGPAGWAWYID----EQTWRAGGWPHGTNNQGELMAVLDLFRATAHLPAEPLH 63 Query: 69 T--DSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 DSQYV +T+W+ WK++GW+ AD KPV NV++ + +DAAL + ++EWVKGHAG Sbjct: 64 ILCDSQYVINCVTKWMPGWKRKGWRKADGKPVLNVEMLKEIDAALVRRTYQFEWVKGHAG 123 Query: 127 HPENERCDELARAAA 141 H NE D ARAA+ Sbjct: 124 HDLNEAADSKARAAS 138 >UniRef50_D2Q8L6 Rnh Ribonuclease H n=2 Tax=Bifidobacterium dentium RepID=D2Q8L6_9BIFI Length = 400 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/149 (41%), Positives = 81/149 (54%), Gaps = 12/149 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYG---------AILRYRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP GP G+G + + G T TN EL A + Sbjct: 3 ITVSTDGSALGNPNGPMGWGWADHDLNAGGTPGHDHAGDCDAGGATNGTNQIGELCAVLE 62 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A +++ TDSQY T+W+H WKK GWK + KKPVKN L + +DA + Q Sbjct: 63 ALRAHPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIKAIDAEISQR 122 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAA 141 +K+ WVKGHAG+ NE+ DELAR A Sbjct: 123 PGPVKFVWVKGHAGNAGNEKVDELARTYA 151 >UniRef50_A4Y094 Ribonuclease H n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y094_PSEMY Length = 162 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 7/151 (4%) Query: 7 IFTDGSCLGN---PGPGGYGA-ILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEAL 59 I+TDG+C N G+GA ++ G+ +A + TNNR EL+AA+ AL Sbjct: 6 IYTDGACTNNGQANARAGWGAYLVNPEGKTLKLAAPVPLEQKQTNNRAELLAAVEALRRC 65 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + + L +DSQ + +G +W+ WK + WK +DKKPV + DLW+++D L + + Sbjct: 66 TKPGPITLYSDSQLLVKGANEWLPGWKAKDWKKSDKKPVDHRDLWEQIDQFLQERDVTLI 125 Query: 120 WVKGHAGHPENERCDELARAAAMNPTLEDTG 150 WV+GHAGHP NE D LA A +++ G Sbjct: 126 WVEGHAGHPGNEVADALADLGASGKRIQELG 156 >UniRef50_Q83HK9 Ribonuclease H n=3 Tax=Actinomycetales RepID=RNH_TROW8 Length = 161 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 8/138 (5%) Query: 9 TDGSCLGNPGPGGYGAILRYRGREKTF-SAGYTRTTNNRMELMAAIVALEALKEHCE--V 65 TDGS L NPGP G+ + E T+ S G+ TNN EL A L A + H + + Sbjct: 10 TDGSSLANPGPSGWA----WYVDENTWDSGGWDIATNNIAELTAVRELLIATR-HTDRPI 64 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHA 125 ++ +DS+YV +T+W+++WK R W+ AD KPV N ++ Q +D+ + I+ WV H Sbjct: 65 LILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHT 124 Query: 126 GHPENERCDELARAAAMN 143 GHP NE D LAR AA N Sbjct: 125 GHPLNEAADSLARQAANN 142 >UniRef50_UPI000050F716 ribonuclease H n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F716 Length = 223 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 4/123 (3%) Query: 10 DGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI-LS 68 DGS LGNPGP G+ Y + + G+ +TNNR ELMA + L + + E + + Sbjct: 8 DGSALGNPGPAGWA---WYVDDDCWHAGGWKESTNNRGELMAVLDLLNSTADAGEDLKVF 64 Query: 69 TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHP 128 DS+YV +T+W+ WK++GWK AD K V N DL ++LD+AL ++++EWVKGH+ H Sbjct: 65 CDSKYVINALTKWMPGWKRKGWKKADGKDVLNKDLLEQLDSALKGREVEFEWVKGHSNHA 124 Query: 129 ENE 131 NE Sbjct: 125 MNE 127 >UniRef50_C2CX87 Possible ribonuclease H n=2 Tax=Bifidobacteriaceae RepID=C2CX87_GARVA Length = 350 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 83/149 (55%), Gaps = 12/149 (8%) Query: 5 VEIFTDGSCLGNP-GPGGY---------GAILRYRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP G G+ G+ ++ + G T TN EL A + Sbjct: 15 IVVSTDGSALGNPNGSMGWAWADHTDEAGSTNEHQHAGNADAGGATNGTNQIGELCAVLE 74 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A ++ + TDSQY T WIH WKK GWK + K+PVKN DL + +D+ + + Sbjct: 75 ALRAHPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLIRAIDSEITKR 134 Query: 115 Q--IKWEWVKGHAGHPENERCDELARAAA 141 + +K+ WVKGHAG+ NE+ DELAR A Sbjct: 135 EGSVKFVWVKGHAGNAGNEKVDELARTYA 163 >UniRef50_B4VV33 RNase H, putative n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VV33_9CYAN Length = 1624 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/141 (41%), Positives = 79/141 (56%), Gaps = 21/141 (14%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGRE-------KTFSAGYTRTTNNRMELMAAIVA 55 K+V ++ DGS LGNPG GG+G +L Y + + A +TTN+RME++AAI Sbjct: 1267 KKVVMYCDGSSLGNPGQGGWGVVLSYTNPQTGQTTTRELSGADSEQTTNSRMEILAAIKG 1326 Query: 56 LEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 LEA+++ CEV + TDS Y+ I N +K N DL RLD HQ Sbjct: 1327 LEAIQDTCEVEIHTDSNYL---IGAMQGNKRK-----------ANQDLLTRLDELSQNHQ 1372 Query: 116 IKWEWVKGHAGHPENERCDEL 136 I W VKGH+G+ NERCD+L Sbjct: 1373 ISWHHVKGHSGNALNERCDQL 1393 >UniRef50_D0WKT5 Ribonuclease HI n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WKT5_9ACTO Length = 292 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 77/134 (57%), Gaps = 8/134 (5%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 + TDG+C GNPGPGG+ + + G G TTNN MEL A + ALE + +++ Sbjct: 153 VATDGACSGNPGPGGWAWVEQVTGERDC--GGAAHTTNNAMELTALVRALEHVGPQPDLL 210 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL----DAALGQHQIKWEWVK 122 + DSQY + +T W W+++GW+ +D PV N DL +RL + G+ ++ EWVK Sbjct: 211 MRIDSQYAIKAMTVWAKAWRRKGWRKSDGAPVANRDLVERLLELYEGRQGRTEV--EWVK 268 Query: 123 GHAGHPENERCDEL 136 GH+G NE D + Sbjct: 269 GHSGDAANELVDSM 282 >UniRef50_Q7V385 Possible ribonuclease HI n=7 Tax=Prochlorococcus marinus RepID=Q7V385_PROMP Length = 240 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 5/141 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYR-GREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +E TDG+C GNPGPGG+G ++ + E TTNNRMEL AAI LE LK+ Sbjct: 9 IEAATDGACSGNPGPGGWGGLIIFNDNSELEIGGSEENTTNNRMELTAAIKTLEKLKDFQ 68 Query: 64 ---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 L TDS+YV +G T+WI NWK+ GWKT+ K V+N+DLWQ++D L + E+ Sbjct: 69 LKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSAGKSVQNLDLWQKID-NLRIKGLVMEF 127 Query: 121 VKGHAGHPENERCDELARAAA 141 VKGH+G +NER D +A + + Sbjct: 128 VKGHSGDKQNERVDLIATSYS 148 >UniRef50_D1NV93 Ribonuclease H n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NV93_9BIFI Length = 409 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 10/147 (6%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGREKTF-------SAGYTRTTNNRMELMAAIVAL 56 + + TDGS LGNP GP G+ G E + + G T TN EL A + AL Sbjct: 34 ITVSTDGSALGNPNGPMGWAWADHTDGDEASHHHGGDCDAGGATNGTNQIGELCAVLQAL 93 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 A +I+ TDSQY T+W+H WKK GWK + K+PVKN L + +DA L Sbjct: 94 RAHPGSEPLIIETDSQYAINCSTKWVHGWKKNGWKNSKKEPVKNAPLIKAIDAELRDRAG 153 Query: 115 QIKWEWVKGHAGHPENERCDELARAAA 141 + + WVKGHAG+ NE+ D LAR A Sbjct: 154 SVTFVWVKGHAGNEGNEKVDLLARTYA 180 >UniRef50_A7SAK2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SAK2_NEMVE Length = 272 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 5/140 (3%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRG--REKTFSAGYT-RTTNNRMELMAAIVALEALKE-- 61 ++TDG C N G + Y G ++ S R TN R E++AA +ALE+ KE Sbjct: 128 VYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALESAKEMG 187 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 +V + TDS+Y G+T WI +WKK GWKTAD K VKN++ +Q+LD + + W V Sbjct: 188 FTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDVKNLEDFQKLDKLCSEIDVHWTHV 247 Query: 122 KGHAGHPENERCDELARAAA 141 GHAG NE D+LA+ A Sbjct: 248 AGHAGIEGNEIADQLAKGGA 267 >UniRef50_A1A0B0 Ribonuclease H n=8 Tax=Bifidobacterium RepID=A1A0B0_BIFAA Length = 445 Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 12/149 (8%) Query: 5 VEIFTDGSCLGNP-GPGGY---------GAILRYRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP GP G+ G + + G T TN EL A + Sbjct: 3 ITVSTDGSALGNPNGPMGWAWADHEPAAGGKPGHEHAGDCDAGGATNGTNQIGELCAVLE 62 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A ++++ TDSQY T+W+ WK+ GWK + KKPVKN DL + +D + Sbjct: 63 ALRAHPGSEDLVIETDSQYAINCSTKWVQGWKRNGWKNSQKKPVKNADLIRAIDNEIAHR 122 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAA 141 +++ WVKGHAG+ NE+ DELAR A Sbjct: 123 AGSVRFVWVKGHAGNAGNEKVDELARTYA 151 >UniRef50_A6LWB3 Ribonuclease H n=2 Tax=Clostridium RepID=A6LWB3_CLOB8 Length = 265 Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Query: 6 EIFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +I+TD S L GG+ I+ +G ++ +++ EL AA+ ALE LK+ + Sbjct: 122 KIYTDASYLEKKNHGGFAFIIEDLKGNYNLYTEKVKDIGSSQAELEAAMKALELLKDVEK 181 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 + + TDSQYVR+G+T+W+ WK +KT + +P KN++ W D A I+++WVK H Sbjct: 182 IRIITDSQYVRKGLTEWLPIWKLNDFKTINGEPAKNIEKWLDFDKACNGKYIEFQWVKAH 241 Query: 125 AGHPENERCDELARAAA 141 + H EN CD A+ A Sbjct: 242 SNHFENSLCDMYAKDIA 258 >UniRef50_C7M9U7 RNase HI n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7M9U7_BRAFD Length = 336 Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 73/125 (58%), Gaps = 5/125 (4%) Query: 9 TDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE--VI 66 DGS LGNPGP G+ Y + G+ TNN EL A + LEA + ++ Sbjct: 7 ADGSALGNPGPAGWA---WYIDDNSWRAGGWPHGTNNMGELKAVLDLLEATAVDADQHLL 63 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 + DSQYV +T+W+ WK++GW+ D KPV NV+L + +D AL +++EWVKGH+G Sbjct: 64 ILCDSQYVINSVTKWMPGWKRKGWRKKDGKPVLNVELLKDIDRALAGRSVEFEWVKGHSG 123 Query: 127 HPENE 131 H NE Sbjct: 124 HAMNE 128 >UniRef50_D1BU35 Ribonuclease H n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BU35_XYLCX Length = 191 Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/132 (40%), Positives = 78/132 (59%), Gaps = 5/132 (3%) Query: 7 IFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 + TDGSCL NPG G+ I GR S G TN EL A + A+EA + Sbjct: 4 VSTDGSCLRNPGGAIGWAWIDHEGGRFD--SGGAASGTNQVAELTAVLRAVEAHPGDEPL 61 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWVKG 123 ++ +DSQY + ++W+ WK++GW+TA PVKN++L Q +DAA+ +++ WV+G Sbjct: 62 LIESDSQYAIRCSSEWLEGWKRKGWRTASGSPVKNLELVQAIDAAIAGRGGPVRFRWVRG 121 Query: 124 HAGHPENERCDE 135 H G+P NER DE Sbjct: 122 HVGNPFNERADE 133 >UniRef50_UPI0000587365 PREDICTED: similar to Ribonuclease H1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587365 Length = 234 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKEHC 63 ++TDG+C N G + Y G + + TN R EL AA+ ALE + EH Sbjct: 86 VYTDGACSHNGFSGAKAGLGVYWGDNHPLNTSARLEGKQTNQRAELTAALRALEQINEHH 145 Query: 64 E---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + V L TDS+Y +T WIH WKK GWKTA K V N + +LD + +KWE+ Sbjct: 146 KRRKVTLYTDSKYTINCVTDWIHRWKKNGWKTAQKTDVINKEDLVKLDKLNRELDVKWEY 205 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDT 149 V GH NER D+LAR A P L ++ Sbjct: 206 VPGHKNVYGNERADKLAREGAAQPLLGNS 234 >UniRef50_B8HCV8 Ribonuclease H n=6 Tax=Actinobacteria (class) RepID=B8HCV8_ARTCA Length = 358 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/123 (44%), Positives = 72/123 (58%), Gaps = 5/123 (4%) Query: 10 DGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HCEVIL 67 DGS LGNPGP G+ Y E + G+ TNN+ ELMA + L A ++ + Sbjct: 8 DGSALGNPGPAGWA---WYVNDECWRAGGWPHGTNNQGELMAVLDLLRATAHVRQEDLHI 64 Query: 68 STDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGH 127 DSQYV IT+W+ WK++GW+ AD KPV NV+L + LD L + +EWVKGHAGH Sbjct: 65 LCDSQYVINSITKWMPGWKRKGWRKADGKPVLNVELLKELDRELAGRKYTFEWVKGHAGH 124 Query: 128 PEN 130 N Sbjct: 125 DLN 127 >UniRef50_A2SIU3 RNase HI n=2 Tax=Proteobacteria RepID=A2SIU3_METPP Length = 150 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 79/136 (58%), Gaps = 3/136 (2%) Query: 8 FTDGSCL-GNPGPGGYGAIL-RYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKEHCE 64 +TDG+C NPGP +GA+L GR +T G+ TN EL AAI L + Sbjct: 6 YTDGACAPSNPGPAAWGAVLIAPDGRTETDHFGFIGHGTNQIAELTAAIEGLTRVPAGAL 65 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L +DSQYV +G+++W W+++G++ + +PV N+ LW++L A ++ WV+GH Sbjct: 66 VELVSDSQYVLKGLSEWRAGWERKGYRNSKGEPVANLGLWKQLFALADARKVSTRWVRGH 125 Query: 125 AGHPENERCDELARAA 140 G P NER D LA A Sbjct: 126 NGDPLNERADALANKA 141 >UniRef50_A3W3Z9 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Roseovarius sp. 217 RepID=A3W3Z9_9RHOB Length = 161 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 1/135 (0%) Query: 8 FTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 +TDGSC NPGPGG L G+ S TTNN+ E+ A I AL A+ E V+ Sbjct: 17 YTDGSCKDNPGPGGCAFRLYAPDGQIIEKSRQSLETTNNKAEMWAVIDALTAIPEDAPVL 76 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 + DS Y++ GI Q + W R W+ + + V+N +LW+++ A + ++ + +K H+G Sbjct: 77 VCLDSGYIKDGIEQHLEGWLSRDWRKTNGQEVRNRELWEKIIALMATREVTFHKIKAHSG 136 Query: 127 HPENERCDELARAAA 141 P+NE D +A AA Sbjct: 137 DPDNEHVDAMAGKAA 151 >UniRef50_A0JT09 Ribonuclease H n=5 Tax=Actinomycetales RepID=A0JT09_ARTS2 Length = 319 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 7/125 (5%) Query: 10 DGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC---EVI 66 DGS LGNPGP G+ Y + + G+ TNN+ ELMA ++ L H E+ Sbjct: 8 DGSALGNPGPAGWAW---YVNDDCWRAGGWPHGTNNQGELMA-VLDLFRCTAHLPGEELH 63 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 + DSQYV +T+W+ WK++GW+ AD KPV NV++ + +D AL + ++EWV+GHAG Sbjct: 64 ILCDSQYVINSVTKWMPGWKRKGWRKADGKPVLNVEILREIDQALSGRKYRFEWVRGHAG 123 Query: 127 HPENE 131 H NE Sbjct: 124 HDLNE 128 >UniRef50_C7MN72 RNase HI n=2 Tax=Bacteria RepID=C7MN72_CRYCD Length = 150 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/145 (40%), Positives = 80/145 (55%), Gaps = 5/145 (3%) Query: 1 MLKQVEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 M ++V+++ DG C GN G GG+G+ L + K G TTNN+MEL I L Sbjct: 1 MSQRVQLYCDGGCRGNQGKVNIGGWGSYLIWGSHTKELFGGERNTTNNKMELTGCIEGLR 60 Query: 58 ALK-EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQ 115 A+K + V + DS YV GI+ WI+ W K+ W + K+PV N DLW L A + + Sbjct: 61 AIKNKSVGVDVYLDSAYVYNGISTWIYGWMKKNWVNSKKEPVANKDLWLELLAEREKFND 120 Query: 116 IKWEWVKGHAGHPENERCDELARAA 140 I + VKGHA + N + DELA A Sbjct: 121 ITFNKVKGHADNVGNIKADELANRA 145 >UniRef50_Q1QJH4 Ribonuclease H n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QJH4_NITHX Length = 128 Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 45/96 (46%), Positives = 61/96 (63%), Gaps = 1/96 (1%) Query: 42 TTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNV 101 TTNNRM++ AAIVAL L C V + TDSQY+++G+T W+ W ++ ++ D V N Sbjct: 22 TTNNRMKMTAAIVALTVLPPACGVTIYTDSQYLQKGMTLWMAGWTRKDFRRKDGL-VPNA 80 Query: 102 DLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELA 137 DLW+ LDA + W W++GH GH NER D LA Sbjct: 81 DLWRTLDALASGRTVTWSWLRGHNGHAGNERADGLA 116 >UniRef50_A5L3F5 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L3F5_9GAMM Length = 153 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 46/98 (46%), Positives = 63/98 (64%) Query: 43 TNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD 102 TN R EL+AA+ L+A V L TDS+YV +G+T+W+ NWK++GW+ + KKPV + D Sbjct: 53 TNIRAELVAALEGLKATPLGSSVELFTDSEYVIKGLTEWMDNWKRKGWRNSAKKPVAHKD 112 Query: 103 LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAA 140 LW LD ++ WVKGH+GH NE D LA+ A Sbjct: 113 LWTELDELYQNRDVQLTWVKGHSGHLLNEEADTLAKEA 150 >UniRef50_B7KMH6 Ribonuclease H n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMH6_CYAP7 Length = 2805 Score = 95.5 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 74/142 (52%), Gaps = 18/142 (12%) Query: 5 VEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH- 62 + ++TDGS LGNPG GG+ I + G+ S T TTNNRMEL A I ++ +KE Sbjct: 2188 ITLYTDGSSLGNPGSGGWAYVICDHEGQRTANSGAVTDTTNNRMELTAVIEGIKTVKETY 2247 Query: 63 ---CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 ++ + +DSQYV + I WK + KN DLW + + E Sbjct: 2248 KDISDIHVVSDSQYVLKSING---EWKNK----------KNTDLWDEFNKISQNLNLTTE 2294 Query: 120 WVKGHAGHPENERCDELARAAA 141 WVKGH GH NE CD LA +AA Sbjct: 2295 WVKGHNGHELNELCDRLANSAA 2316 >UniRef50_C5EB64 Ribonuclease H n=2 Tax=Bifidobacterium longum RepID=C5EB64_BIFLO Length = 345 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 13/150 (8%) Query: 5 VEIFTDGSCLGNP-GPGGY---------GAILRYRGREKTFSAG-YTRTTNNRMELMAAI 53 + + TDGS LGNP GP G+ G ++ + + AG T TN EL A + Sbjct: 52 ITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVL 111 Query: 54 VALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ 113 AL A +++ +DSQY T+W+ WKK GWK + KKPVKN +L Q +D + Q Sbjct: 112 EALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQ 171 Query: 114 H--QIKWEWVKGHAGHPENERCDELARAAA 141 + + WVKGHAG+ NE DELAR A Sbjct: 172 RPGPVDFRWVKGHAGNEGNELVDELARTYA 201 >UniRef50_C7GZL7 Ribonuclease HI n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZL7_9FIRM Length = 206 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 49/126 (38%), Positives = 73/126 (57%), Gaps = 5/126 (3%) Query: 4 QVEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 ++ I++DGSC GN GG+GAIL +R +K G TTNN MEL+A I A +K Sbjct: 7 RIRIYSDGSCRGNQSDENLGGFGAILEFRDHKKEVKGGMVNTTNNVMELLAIIKAFRLIK 66 Query: 61 -EHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + V + +DS Y+ +Q W W+K G+ T+ K+PVKNV+LW+ L + + + Sbjct: 67 TDKYSVDVFSDSAYIVNCFSQGWYKKWEKNGFITSSKEPVKNVELWKELIGYNAKFNVVF 126 Query: 119 EWVKGH 124 +KGH Sbjct: 127 HKIKGH 132 >UniRef50_D2R9R7 Ribonuclease HI n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R7_GARVA Length = 361 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 12/149 (8%) Query: 5 VEIFTDGSCLGNP-GPGGY---------GAILRYRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP G G+ G+ + + G T TN EL A + Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHIDESGSSNEHHHTGNADAGGATNGTNQIGELCAVLE 77 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A + + +DSQY T WIH WKK GWK + +PVKN +L + +DA + + Sbjct: 78 ALRAHPGREPLTIESDSQYAINCATTWIHGWKKNGWKNSKNEPVKNAELIRAIDAEITKR 137 Query: 115 Q--IKWEWVKGHAGHPENERCDELARAAA 141 + +K+ WVKGHAG+ NE+ D LAR A Sbjct: 138 EGAVKFVWVKGHAGNEGNEKVDTLARGYA 166 >UniRef50_B2GFP5 Ribonuclease HI n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GFP5_KOCRD Length = 371 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 79/136 (58%), Gaps = 5/136 (3%) Query: 9 TDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILS 68 DGS LGNPGP G+ Y + G+ TNN EL A + LEA + + L+ Sbjct: 7 ADGSALGNPGPAGWA---WYIDPTSWRAGGWAHGTNNMGELTAVLDLLEATRHRRDEALT 63 Query: 69 T--DSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAG 126 DSQYV +T+W+ WKK+GWK D KPV NVD+ + LD L ++ +EWVKGHAG Sbjct: 64 VYCDSQYVINSVTKWMPGWKKKGWKKRDGKPVLNVDIMKALDRELSGRKVTFEWVKGHAG 123 Query: 127 HPENERCDELARAAAM 142 H NE DE ARA AM Sbjct: 124 HELNEAADERARAMAM 139 >UniRef50_D1YER5 Ribonuclease HI n=4 Tax=Actinomycetales RepID=D1YER5_PROAC Length = 300 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 68/124 (54%), Gaps = 4/124 (3%) Query: 9 TDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE-VIL 67 DGS L NPGP G+ Y + + G+ R TNN EL A + L A ++ E + + Sbjct: 6 ADGSSLDNPGPAGWAW---YIDDDTWAAGGWPRGTNNMGELKAVLDVLRATRDANEPLTI 62 Query: 68 STDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGH 127 DSQY T+WI WK+ GW+ D KPV N DL + +D L + +EWVKGHAGH Sbjct: 63 LCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKGHAGH 122 Query: 128 PENE 131 NE Sbjct: 123 AMNE 126 >UniRef50_C1BKT9 Ribonuclease H1 n=5 Tax=Euteleostomi RepID=C1BKT9_OSMMO Length = 306 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALE 57 M V ++TDG C GN G I Y GR+ + R TN R EL AA ALE Sbjct: 148 MGDAVVVYTDGCCSGNGRIGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALE 207 Query: 58 ALKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 KE +++L TDS++ G+T W+ NWK GW+ V N + +Q+LD G+ + Sbjct: 208 QAKEMNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLNSGGHVINKEDFQKLDKLNGEVE 267 Query: 116 IKWEWVKGHAGHPENERCDELARAAA 141 + W V GHAG+ NE D L+R A Sbjct: 268 VVWLHVPGHAGYLGNEEADRLSRVGA 293 >UniRef50_Q66LX4 Ribonuclease H n=4 Tax=Siphoviridae RepID=Q66LX4_BPT5 Length = 162 Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 12/151 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYT-RTTNNRMELMAAIVAL-- 56 ++ ++TDG+C NPGPG +G I+ ++ S +GY+ +TTNN MEL A + AL Sbjct: 4 IMSVFHVYTDGACKSNPGPGAWGFIVYDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRW 63 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 K++ +++ TDS Y + G+ W+ +W+++GWK AD + N++LWQ L Q I Sbjct: 64 SVKKDNRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEA-FKLTQQYI 122 Query: 117 KWE-------WVKGHAGHPENERCDELARAA 140 + VKGH+G NE D L Sbjct: 123 NFHNTNPTFIKVKGHSGISGNEAVDALCNTV 153 >UniRef50_O44114 Ribonuclease H1 n=3 Tax=Drosophila melanogaster RepID=O44114_DROME Length = 333 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 7/141 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V ++TDGSC+GN G Y G+ +A R TNN E+ AAI A++ + Sbjct: 182 VIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALD 241 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI--K 117 ++ +STDSQ++ IT W+ WKKR WK + +PVKNV ++ LD L + I K Sbjct: 242 LGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQDNNITVK 301 Query: 118 WEWVKGHAGHPENERCDELAR 138 W +V+ H G NE D+LAR Sbjct: 302 WNYVEAHKGIEGNEMADKLAR 322 >UniRef50_UPI000185C12F ribonuclease H n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C12F Length = 301 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + DGS L NPGP G+ Y + G+ TNNR EL A L A Sbjct: 2 NITAAVDGSALHNPGPAGW---CWYIDDSCWAAGGWKEGTNNRGELTALAELLRATAHIP 58 Query: 64 E--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + + + DSQYV +T+W+ WK++GWK D KPV NVD+ Q +D L I EWV Sbjct: 59 DEPLFVLCDSQYVINSVTKWMPGWKRKGWKKRDGKPVLNVDILQDIDQLLVGRNIHLEWV 118 Query: 122 KGHAGHPENE 131 KGH+GH NE Sbjct: 119 KGHSGHDMNE 128 >UniRef50_A1SDS5 Ribonuclease H n=1 Tax=Nocardioides sp. JS614 RepID=A1SDS5_NOCSJ Length = 143 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 77/138 (55%), Gaps = 9/138 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHCE 64 E+FTDG+C GNPGPGG+ L +++G +TN RME+ AA+ A+ +L Sbjct: 9 EVFTDGACSGNPGPGGWAWAL----DTAVYASGREAPSTNQRMEIRAALEAVRSLDGPLL 64 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVK 122 V+ +DS YV W W R W ++ +KPV N DLW+ L + + + + WVK Sbjct: 65 VV--SDSTYVVHCFRDLWWQGWLDRDWVSSARKPVANRDLWEPLVGLVQDRGDVAFAWVK 122 Query: 123 GHAGHPENERCDELARAA 140 GH+GH N+ D LA AA Sbjct: 123 GHSGHVMNDFVDRLAVAA 140 >UniRef50_C5GNS4 RNase H domain-containing protein n=4 Tax=Onygenales RepID=C5GNS4_AJEDR Length = 434 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 57/151 (37%), Positives = 77/151 (50%), Gaps = 9/151 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGY--TRTTNNRMELMAAIVALEALK 60 ++I+TDGS L N G I Y G E+ S +R TN R EL A I AL+ Sbjct: 243 LKIYTDGSSLRNGAMGAKAGIGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAP 302 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK--- 117 H +V + TDS+Y +T W NW++ W TA KPV+N DL Q + + + + Sbjct: 303 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILMKIEERTVMNVK 362 Query: 118 --WEWVKGHAGHPENERCDELARAAAMNPTL 146 +EWV+GH+ P NE D LA A N L Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGAKNAPL 393 >UniRef50_B8DW51 Ribonuclease H n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DW51_BIFA0 Length = 329 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 10/147 (6%) Query: 5 VEIFTDGSCLGNP-GPGGY-------GAILRYRGREKTFSAGYTRTTNNRMELMAAIVAL 56 + + TDGS L NP GP G+ GA + + G T TN EL A + AL Sbjct: 3 ITVSTDGSALRNPNGPMGWAWADHTDGARDEHAHAGDCAAGGATNGTNQIGELCAVLEAL 62 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 A +++ +DSQY ++W+ WKK GWK + ++PVKN + + +DA + + Sbjct: 63 RAHPGSEPLVIESDSQYAINCSSKWVFGWKKNGWKNSKQEPVKNAPIIKAIDAEISKRAG 122 Query: 115 QIKWEWVKGHAGHPENERCDELARAAA 141 ++ + WVKGHAG+ NE+ D+LAR A Sbjct: 123 KVSFRWVKGHAGNAGNEKVDDLARGFA 149 >UniRef50_C1B0N1 Ribonuclease HI n=3 Tax=Nocardiaceae RepID=C1B0N1_RHOOB Length = 178 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 4/139 (2%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 + + TDGSCL NPG A + + G + S G TN EL A + A+ A Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWVNHEGPSQ--SGGEPSGTNQIAELRALLEAITAHPGADP 59 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWVK 122 +++ +DSQY + ++W+ WK++GWKTA PVKN+ L Q +D A+ + +++ WV+ Sbjct: 60 LLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAIAERPGPVRFRWVR 119 Query: 123 GHAGHPENERCDELARAAA 141 GH G+ NE D LA AA Sbjct: 120 GHVGNHYNEMADVLAGEAA 138 >UniRef50_Q86MG7 Rnase h protein 1.0, isoform c, partially confirmed by transcript evidence n=4 Tax=Caenorhabditis RepID=Q86MG7_CAEEL Length = 251 Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 5/140 (3%) Query: 7 IFTDGSCLGN---PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH- 62 ++TDG+C N G+G + F Y TNNR EL+A A+E E Sbjct: 105 VYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEKR 164 Query: 63 -CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 +V++ TDS + Q + WIH WK++GWKT+ V N D+ ++D + ++K+ V Sbjct: 165 LPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLHV 224 Query: 122 KGHAGHPENERCDELARAAA 141 +GHAG NE+ DELAR A Sbjct: 225 RGHAGIDGNEKADELARKGA 244 >UniRef50_A2QPK3 Contig An07c0360, complete genome n=16 Tax=Eurotiomycetidae RepID=A2QPK3_ASPNC Length = 410 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 21/152 (13%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT----------TNNRMELMAAIV 54 + I+TDGS L N G L G F G +R TN R EL A + Sbjct: 236 LRIYTDGSSLKN------GKALASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILR 289 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ- 113 AL+ H +V + TDSQY +T W W++ W TA KPV N DL + + + + + Sbjct: 290 ALDIAPRHRDVTIFTDSQYAINCVTVWFTKWRRNNWMTAGNKPVDNKDLVESILSKIEER 349 Query: 114 HQIK----WEWVKGHAGHPENERCDELARAAA 141 +++K +EWVKGH+ HP NE D LA + A Sbjct: 350 NELKVKTLFEWVKGHSSHPGNEAADRLAVSGA 381 >UniRef50_D2NR13 Ribonuclease HI n=2 Tax=Rothia mucilaginosa RepID=D2NR13_9MICC Length = 472 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/141 (43%), Positives = 77/141 (54%), Gaps = 5/141 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +++ DGS LGNPGP G+ Y + S G+ TNN EL A + EA Sbjct: 5 QEIIAAADGSALGNPGPAGWA---WYIDDDHWASGGWAHGTNNMGELKAVLDLFEATASR 61 Query: 63 CEVILST--DSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E L DSQYV +T+W+ WKK+GWK +D KPV N DL + LD L ++ W Sbjct: 62 PEAKLRVYCDSQYVINSLTKWMPGWKKKGWKKSDGKPVLNRDLLEALDQVLTGRDYEFIW 121 Query: 121 VKGHAGHPENERCDELARAAA 141 VKGHAGH NE+ D LA AA Sbjct: 122 VKGHAGHELNEKADSLANGAA 142 >UniRef50_C0ZQX0 Ribonuclease HI n=2 Tax=Rhodococcus erythropolis RepID=C0ZQX0_RHOE4 Length = 183 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 6/140 (4%) Query: 5 VEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G G A + + G + S G TN EL A A+ A Sbjct: 2 IIVSTDGSCLRNPG-GAIGWAWVNHEG--PSMSGGEASGTNQIAELRALFEAVVAHPGAD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ +WK++GWKTA VKN++L Q +D A+ +++ WV Sbjct: 59 PLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVRFRWV 118 Query: 122 KGHAGHPENERCDELARAAA 141 +GH G+ NE D+LA AA Sbjct: 119 RGHVGNHYNEMADKLAGEAA 138 >UniRef50_D0LP47 Ribonuclease H n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LP47_HALO1 Length = 215 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 55/137 (40%), Positives = 75/137 (54%), Gaps = 16/137 (11%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--KEHCE 64 I+TDG+C GNPGP G GA++ + S TNN EL+A ALEA+ ++ + Sbjct: 87 IYTDGACTGNPGPAGIGAVILDGEERREISEYLGEGTNNIAELVAIERALEAVAPEDARQ 146 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVKG 123 V++ +DS Y +GW KP NV+L R+ A ++++ VKG Sbjct: 147 VVVHSDSSYA--------IGLLSKGW-----KPKANVELVGRIRALTAAVRRLRFVKVKG 193 Query: 124 HAGHPENERCDELARAA 140 HAG PENERCDELAR A Sbjct: 194 HAGIPENERCDELARDA 210 >UniRef50_Q58E11 MGC115038 protein n=2 Tax=Xenopus RepID=Q58E11_XENLA Length = 204 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 9/146 (6%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEAL 59 + E++TDG C N G G I Y G + + R TN R E+ AA A + Sbjct: 59 RSAEVYTDGCCSRNGQYGANGGIGVYWGPNDSRNVSARLEGRQTNQRAEIEAAYTAAKQA 118 Query: 60 KE----HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 + H E+ +TDS++ G+T+W+ WK+ WKT D + V N +Q+LD A Sbjct: 119 RNDNVTHLEI--NTDSKFTIDGMTKWVPRWKENNWKTIDGRDVINKQDFQKLDKACENMD 176 Query: 116 IKWEWVKGHAGHPENERCDELARAAA 141 +KW +V GH+G+ NE D+LA+A + Sbjct: 177 VKWNYVPGHSGNAGNEMADQLAKAGS 202 >UniRef50_Q04CJ1 RNase HI n=5 Tax=Lactobacillus RepID=Q04CJ1_LACDB Length = 255 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 21/151 (13%) Query: 7 IFTDGSCLGNPGPGG----------YGAILRYRGREKTFSAGYTRTTNNRMELMAAIVAL 56 IFTDG C N G + ++ Y G++ + S G TNN ME+ A + +L Sbjct: 97 IFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLESL 156 Query: 57 EALKE----HCEVILSTDSQYVRQGITQ------WIHNWKKRGWKTADKKPVKNVDLWQR 106 + L+E ++ S DSQYV + ++ WI W++RGWK AD PV N +LWQ Sbjct: 157 KKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQE 216 Query: 107 LDAALGQH-QIKWEWVKGHAGHPENERCDEL 136 + + + Q ++EWVKGHA N D L Sbjct: 217 IAKEMAKFAQPEFEWVKGHANSAGNNFVDGL 247 >UniRef50_C8VF62 Ribonuclease H, putative (AFU_orthologue; AFUA_1G07180) n=2 Tax=Emericella nidulans RepID=C8VF62_EMENI Length = 463 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRG-----REKTFSAGYTRTTNNRMELMAAIVALEAL 59 + I+TDGS L N + Y G R + +R TN R EL A + AL+ Sbjct: 280 LRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRALDIA 339 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH----- 114 H +V + TDSQY +T W W+ W TADKKPV+N DL + + + + + Sbjct: 340 PRHRDVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDERTELRV 399 Query: 115 QIKWEWVKGHAGHPENERCDELA-RAAAMNPTLEDTGYQV 153 + +EWVKGH P NE D LA A + ++ GY + Sbjct: 400 KTLFEWVKGHDADPGNEAADRLAVNGAQRGASEQELGYDI 439 >UniRef50_A8QFV5 RNase H family protein n=1 Tax=Brugia malayi RepID=A8QFV5_BRUMA Length = 212 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 77/143 (53%), Gaps = 6/143 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKT--FSAGYTR--TTNNRMELMAAIVALEAL--K 60 ++TDG+C N G I Y G + S R TNNR EL A I A++ + Sbjct: 64 VYTDGACSFNGHVGATAGIGVYWGEQHVDNISEPLLRGPPTNNRAELEAVIRAVQMAIQR 123 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + ++I+ TDS + Q + WIH W+K GWKT++ VKN DL L+ L +++E Sbjct: 124 RYHQLIVRTDSNLLIQTMNSWIHGWQKNGWKTSNGTTVKNQDLIIELNGLLKNINVRFEH 183 Query: 121 VKGHAGHPENERCDELARAAAMN 143 V GH G NE+ D+LAR A++ Sbjct: 184 VAGHVGIYGNEKADQLAREGALH 206 >UniRef50_Q6ML79 RnhA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML79_BDEBA Length = 153 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 2/136 (1%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 L + E++TDGS G Y + R R + S TR T+N+ME AAI AL +L Sbjct: 12 FLPRFEVYTDGSVKNGRGAWAYVVVRRNRVLREA-SGVQTRPTSNQMEFQAAIEALSSLP 70 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E ++L TDS+ + + + Q + WK GW + +P+ V+ ++LD L +++W+W Sbjct: 71 EKSRIVLYTDSRVLIETL-QKVPEWKGLGWVKSRGQPIPQVNQLKQLDQLLTVRKVQWKW 129 Query: 121 VKGHAGHPENERCDEL 136 VK H+G NERCD L Sbjct: 130 VKAHSGIKHNERCDVL 145 >UniRef50_UPI000186D39C asparagine-rich protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D39C Length = 710 Score = 84.0 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALE-ALK 60 V+++TDG+CL N I + G + TNN E+ AA VA+E A+K Sbjct: 552 VQVYTDGTCLNNGKKEARAGIGIWFGDSHPLNVSEPLVGSPTNNCAEIQAARVAMELAIK 611 Query: 61 EHCEVI-LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + + + TDS ++ T+WI WKK GW D VKN + ++LD + ++KWE Sbjct: 612 AGIKKLKIFTDSSFLINCATKWIRRWKKNGWTLVDGGKVKNREELEKLDLVAQKLKVKWE 671 Query: 120 WVKGHAGHPENERCDELARAAAM 142 V+GH+G NE D LA A A+ Sbjct: 672 KVEGHSGIKGNEMADRLANAGAL 694 >UniRef50_Q2S3J4 Ribonuclease H n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3J4_SALRD Length = 307 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 15/136 (11%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 I TDG+C+ NPGPGG+ A++ + G + TTNNRMEL A AL + EV Sbjct: 172 ISTDGACISNPGPGGWAAVIVHDGEVRRIMGRVDDTTNNRMELWAIGEALSEIPSDSEVE 231 Query: 67 LSTDSQY-VRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHA 125 + +DS+Y ++ +W +N L + + + +H+++W V+GH+ Sbjct: 232 IRSDSRYAIKIASGEW--------------NASENRALVEAVRRQVDRHEVEWTKVEGHS 277 Query: 126 GHPENERCDELARAAA 141 G PENE D+LA AA Sbjct: 278 GDPENEEADDLAEAAV 293 >UniRef50_A6RRU3 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6RRU3_BOTFB Length = 325 Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 74/148 (50%), Gaps = 11/148 (7%) Query: 5 VEIFTDGSCLGNPGPG---GYGAILRYRGREKTFSAGY--TRTTNNRMELMAAIVALEAL 59 ++++TDGS GN G GYG G E+ SA + TN R EL AA+ ALE + Sbjct: 175 IKVWTDGSSRGNGKVGAVAGYGVFFG-DGDERNISAPLEGSPQTNQRAELTAALRALETV 233 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH----- 114 + + TDS Y T W NW K GWKT+ KPV N DL +++ A + + Sbjct: 234 PLDKNIEIITDSNYTINCATVWYKNWGKNGWKTSTGKPVMNEDLVKQIRALIDKRTKNKA 293 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAM 142 Q WVKGH +P N D LA AM Sbjct: 294 QTNLTWVKGHDENPGNVAADRLAVKGAM 321 >UniRef50_Q7Q3X5 AGAP008088-PA n=1 Tax=Anopheles gambiae RepID=Q7Q3X5_ANOGA Length = 294 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 5 VEIFTDGSCLGN------PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 V ++TDGSC GN G G Y A K S R TNN E+ AA +A+ Sbjct: 141 VHVYTDGSCEGNGTARAVAGLGVYFAEGHALNTAKPVSG---RATNNCGEIQAASLAIRL 197 Query: 59 LKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL--GQH 114 ++ ++++TDSQ++ IT+W+ WK+R W A PVKN + L+ L G Sbjct: 198 ARQQGIRRLVVNTDSQFLINAITKWLPGWKRRNWTLASGGPVKNQTDFMELERELSAGDI 257 Query: 115 QIKWEWVKGHAGHPENERCDELAR 138 QIKW V H G NER D+LAR Sbjct: 258 QIKWNHVDAHCGILGNERADQLAR 281 >UniRef50_D1CSV7 Ribonuclease HI (Fragment) n=1 Tax=Sinorhizobium fredii RepID=D1CSV7_RHIFR Length = 181 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 35/86 (40%), Positives = 53/86 (61%) Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 +++ +DSQ + +G+T W+ NWK+ W+ +DK+PV+N DLW +LDA + ++WEW KGH Sbjct: 6 IVIRSDSQLLIKGMTTWLANWKRNSWRKSDKRPVENQDLWIQLDALVEGKNLRWEWTKGH 65 Query: 125 AGHPENERCDELARAAAMNPTLEDTG 150 G NE D AR A + G Sbjct: 66 NGDAYNEEADRPARQAMRTALIRKNG 91 >UniRef50_B8FI74 Ribonuclease H n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FI74_DESAA Length = 225 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 73/138 (52%), Gaps = 15/138 (10%) Query: 8 FTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HCEVI 66 +TDG+ NPGP G G +L+Y+G K S TTNN EL A +VAL+ +K+ V Sbjct: 95 YTDGASSHNPGPAGLGVLLKYKGHAKEISQYIGETTNNVAELSAILVALQNIKKRELPVR 154 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVKGHA 125 + TDS+Y + Q GWK NV+L ++ + + + IK WVKGHA Sbjct: 155 IFTDSKYSFGVLFQ--------GWKAK-----ANVELIAKIQNEISKFRDIKCYWVKGHA 201 Query: 126 GHPENERCDELARAAAMN 143 +P NE D+LA A N Sbjct: 202 DNPYNEIADKLATDAIKN 219 >UniRef50_B3S3Z5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Z5_TRIAD Length = 173 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/140 (35%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 7 IFTDGSCLGN---PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH- 62 ++ DG C N G G Y + TN R EL+AA ALE+ +H Sbjct: 30 VYCDGCCFNNGFQNARAGIGIYWSYPNLSSVSERLSGKQTNQRAELVAACKALESASDHN 89 Query: 63 CEVI-LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 E I + TDS Y +T WI+ WK+ WKT+ VKN + +LD Q ++KW + Sbjct: 90 LETIEIRTDSMYTINVVTNWINKWKRNEWKTSSGDEVKNKEDIVKLDHLNSQLRVKWTHI 149 Query: 122 KGHAGHPENERCDELARAAA 141 + HAG NE D+LA+A A Sbjct: 150 RSHAGDVGNEMADKLAKAGA 169 >UniRef50_Q9UST8 Ribonuclease H n=1 Tax=Schizosaccharomyces pombe RepID=RNH1_SCHPO Length = 264 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++ DGS L N G + G R + TNNR EL A I+ALE Sbjct: 126 VYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALE--NTS 183 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 ++ + +DS Y + +T W+ WKK +KT++ +PVKN+DL R + + E+VK Sbjct: 184 GDLTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSDRNVSLEYVK 243 Query: 123 GHAGHPENERCDELARAAA 141 GH+ N++ D LAR A Sbjct: 244 GHSTDYGNQQADMLARRGA 262 >UniRef50_Q5E052 Ribonuclease H n=20 Tax=Vibrionaceae RepID=Q5E052_VIBF1 Length = 148 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/141 (35%), Positives = 75/141 (53%), Gaps = 8/141 (5%) Query: 7 IFTDGSCLGNPG---PGGYGAILRYRGRE--KTFSAGYTRTTNN-RMELMAAIVALEALK 60 I+ DG+ N G GG G + E T S R T+N +ELMA + LE Sbjct: 8 IYIDGAAPNNQGGCMKGGIGIAVYDVNNELMDTCSITVNRATDNAELELMALVEGLEYAA 67 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + I+ +DS++ +G +W+ WK +GW+ ADKKPV +LWQ++DA + ++ Sbjct: 68 DG--DIIYSDSEFCVKGYNEWLDGWKAKGWRKADKKPVAYRELWQQVDALRKEKYVEVVK 125 Query: 121 VKGHAGHPENERCDELARAAA 141 V+ H+G NE+ D LA AA Sbjct: 126 VRAHSGVEGNEKADSLASMAA 146 >UniRef50_UPI0001757D40 PREDICTED: similar to GA21286-PA n=1 Tax=Tribolium castaneum RepID=UPI0001757D40 Length = 231 Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 74/143 (51%), Gaps = 6/143 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V ++TDG+C N G I + G + + TNN E+ A I A++ ++ Sbjct: 84 VTVYTDGACENNGREGAKAGIGVWFGDNHPLNVSKPVKGKATNNAAEIQACICAVQIARD 143 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWK-TADKKPVKNVDLWQRLDAALGQHQIKW 118 + ++ + TDSQ+ +T+WI +WKK WK ++ K PVKN +Q LD ++W Sbjct: 144 NGIKKLQIITDSQFTINAMTKWIKSWKKNNWKLSSSKNPVKNKTDFQELDKLCEGLDVQW 203 Query: 119 EWVKGHAGHPENERCDELARAAA 141 + V GH+G NE D LAR A Sbjct: 204 QHVAGHSGIKGNECADMLAREGA 226 >UniRef50_A8PYJ8 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PYJ8_MALGO Length = 304 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 11/152 (7%) Query: 4 QVEIFTDGSCLGNPGPG---GYGAI----LRYRGREKTFSAGYTRTTNNRMELMAAIVAL 56 ++ ++TDGS GN G GYG L +R G +T NNR EL A ++A+ Sbjct: 154 EIIVYTDGSSHGNGKRGSIAGYGVYWADPLYHRQNVAARLPGPVQT-NNRAELTAILIAI 212 Query: 57 EALKEHCEVI-LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--Q 113 L + + + TDS+Y Q I +WI W+ WKT+ KK V+N DL++ + A+ + Sbjct: 213 RTLPDPSRPLHIYTDSRYAIQAINKWIVQWRANNWKTSTKKDVENRDLFEAIQDAINACR 272 Query: 114 HQIKWEWVKGHAGHPENERCDELARAAAMNPT 145 ++ +V+GHAGH N D+LA A + T Sbjct: 273 YRPVLTYVRGHAGHYGNVMADKLANEGAASGT 304 >UniRef50_Q03P82 RNase HI n=15 Tax=Lactobacillus RepID=Q03P82_LACBA Length = 264 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 11/111 (9%) Query: 34 TFSAGYTRTTNNRMELMA------AIVALEALKEHCEVILSTDSQYVRQGITQ-WIHNWK 86 T SAG +NNRME+MA +VALE +E + IL DS+YV +TQ W+ WK Sbjct: 113 TGSAGEFGASNNRMEIMAFRNALQRLVALEKTQESIQFIL--DSRYVLNAVTQGWLAGWK 170 Query: 87 KRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERCDEL 136 +RGW+ + P+ N +LWQ +D L Q Q+ ++W KGHA + N D L Sbjct: 171 RRGWRRS-AGPLANAELWQDVDRLLPQFSQLSYQWTKGHATNQGNVFVDHL 220 >UniRef50_D1WSF8 Ribonuclease H n=10 Tax=Streptomyces RepID=D1WSF8_9ACTO Length = 249 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 4/146 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYR-GREKTFSAGYTRT-TNNRMELMAAIVALEA 58 M + + DG+ GNPGP + ++ G + AG T TNN EL A LE+ Sbjct: 9 MNESIIAACDGASKGNPGPAAWAWVVADALGEPVRWEAGPLGTATNNVAELTALAQLLES 68 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + V + DSQY +T+W+ WK+ GWKT+ KPV N +L R+DA L + + Sbjct: 69 IDPAVRVEVRMDSQYAMNAVTKWLPGWKRNGWKTSAGKPVANRELVTRIDALLADRPVTF 128 Query: 119 EWVKGHA--GHPENERCDELARAAAM 142 +V H G P N D+ A A+ Sbjct: 129 RYVPAHQVNGDPLNAIADQAADEVAV 154 >UniRef50_O60930 Ribonuclease H1 n=26 Tax=Bilateria RepID=RNH1_HUMAN Length = 286 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V ++TDG C N I Y G + G R TN R E+ AA A+E K Sbjct: 140 VVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT 199 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 +++L TDS + GIT W+ WKK GWKT+ K V N + + L+ I+W Sbjct: 200 QNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWM 259 Query: 120 WVKGHAGHPENERCDELARAAA 141 V GH+G NE D LAR A Sbjct: 260 HVPGHSGFIGNEEADRLAREGA 281 >UniRef50_Q6C6C0 YALI0E10725p n=1 Tax=Yarrowia lipolytica RepID=Q6C6C0_YARLI Length = 474 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 12/144 (8%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALKE 61 ++F DG+C N GP Y G ++ T T+ R EL A + A + +++ Sbjct: 303 QVFVDGACSNNGGPDAKAGYGLYFGENNPWNVAASVMGTVHTSQRAELQAIMKAYQVIEK 362 Query: 62 ----HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ---RLDAALGQH 114 H I+S DS Y +T+W H+WKK GWKT++ KPV+NVDL Q ++ L + Sbjct: 363 KDNGHSYEIMS-DSSYAINCLTKWRHDWKKHGWKTSEGKPVENVDLIQDCIKIMDRLVKR 421 Query: 115 QIKWEWVKGHAGHPENERCDELAR 138 I + V+ H N+R D LAR Sbjct: 422 GIALKKVQAHGDSKGNKRADVLAR 445 >UniRef50_A8N3A5 Predicted protein n=2 Tax=Eukaryota RepID=A8N3A5_COPC7 Length = 502 Score = 75.9 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALE-ALKEH 62 ++TDG+ GN PG I + G + + TNNR EL+A + LE A Sbjct: 99 VYTDGASKGNGQPGSVAGIGVWWGHDDPRNIAERCPGDQTNNRAELLAILRVLETAPISK 158 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-----HQIK 117 +++ +DSQY + W+ W KRGWK A +PVKN + + + A L + +++ Sbjct: 159 TPLLIKSDSQYSMNCLQVWLPGWVKRGWKNAKGEPVKNAPIIRLISAHLDRRAQLGQKVR 218 Query: 118 WEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 +V+GH+G+ N+ D A A + P E+ + E Sbjct: 219 MVYVEGHSGNVGNDGADAQANAGCLLPPTEERDWDAE 255 >UniRef50_UPI000051AB6A PREDICTED: similar to Ribonuclease H1 (RNase H1) (Ribonuclease H type II) n=2 Tax=Apocrita RepID=UPI000051AB6A Length = 261 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 5/140 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS---AGYTRTTNNRMELMAAIVALEALKE 61 V ++TDG+C N I + G + A R TNN E+ A +A + K+ Sbjct: 117 VNVYTDGACSLNGHKNAQAGIGVWFGNNHPLNISKAVIGRATNNMAEIQAVTIAAKQAKK 176 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + ++TDSQ++ I W+ WK+ GWKT + KPV N ++ AL + W Sbjct: 177 AGIKNLKINTDSQFLISCINNWMPKWKRNGWKTFNNKPVINKIELLEMENALKSLNVIWN 236 Query: 120 WVKGHAGHPENERCDELARA 139 V GHAG NE D+LARA Sbjct: 237 HVNGHAGIYGNEMADKLARA 256 >UniRef50_UPI00016B24DF ribonuclease HI n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B24DF Length = 141 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 68/137 (49%), Gaps = 6/137 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVAL-EALKEHC 63 + +TDGS NPGPGG+ I + + TTN RME A I AL +A C Sbjct: 2 ITYYTDGSASPNPGPGGFAVIRDLQ--PWILGSEDGETTNIRMEGKALIAALRDADGAPC 59 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + TDS++ +T+W W++RGW T +KN+D+ Q L Q Q WV+G Sbjct: 60 AIY--TDSEFWINVVTKWAPGWQQRGW-TKKGGEIKNLDIVQELYELYAQSQADLRWVRG 116 Query: 124 HAGHPENERCDELARAA 140 H G NE DE A A Sbjct: 117 HEGDEGNELADEWANRA 133 >UniRef50_B2AD65 Predicted CDS Pa_4_220 n=1 Tax=Podospora anserina RepID=B2AD65_PODAN Length = 311 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++TDG+ GN G G + + G R + TN R EL A + AL+ + Sbjct: 156 VYTDGAAPGNGKAGACGGVGVWFGADDPRNVSERLAGPLQTNQRAELTAILRALQLVDLD 215 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK----- 117 + + TDSQY +T+W +W K+GWKTA PVKN DL + + + + K Sbjct: 216 SPIEIRTDSQYSIDCVTKWYVSWVKKGWKTAGGTPVKNADLVKSIRDLMEDREAKGTITI 275 Query: 118 WEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 V GH+G N++ D LA A P L++ G Sbjct: 276 LTKVVGHSGDYGNDQADRLAVLGAQLPALDEKG 308 >UniRef50_B9JEK9 Putative uncharacterized protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JEK9_AGRRK Length = 165 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 13/146 (8%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSA--GYTRTTNNRMELMAAIVALEALKEH 62 + +FTDGS GG+ A +RG + F+A RT NN MEL+A + A E L ++ Sbjct: 14 LHVFTDGSFDPVSKTGGW-AFAVFRGSAQVFAAFGSEARTANNAMELLAILQACEWLADN 72 Query: 63 C---EVILSTDSQYVRQGITQWIHNWKKRGWKT------ADKKPVKNVDLWQRLDAALGQ 113 E ++ TDS Y G +W H W+ W+ + V + W+ +D L Q Sbjct: 73 AAGEEAVIHTDSAYAVNGCIRWRHIWRSNKWRKRTPNGQGRSRSVADAAYWRAIDVLLNQ 132 Query: 114 H-QIKWEWVKGHAGHPENERCDELAR 138 + IK +W KGH G NE D LA+ Sbjct: 133 NPTIKVKWCKGHVGVEGNEVADALAQ 158 >UniRef50_B6VBD2 Putative uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis brenneri RepID=B6VBD2_CAEBE Length = 247 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 13/164 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRT---TNNRMELMAAIVALEALK 60 + I+TDG L N PG G + Y + + GY TNNR EL A ALE Sbjct: 13 LHIYTDGCALRNGQPGAKGGWAIVYELGDFQDAYGYCMDGPQTNNRFELEAIGQALERSL 72 Query: 61 E---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-----G 112 E ++ + TDS+Y I WI WK+ GW+ + K V N L Q +D+ L Sbjct: 73 ESGGEYDITIFTDSKYAINSIKHWIKKWKQNGWRNSQGKRVHNDLLIQDIDSMLEDINYA 132 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAAM-NPTLEDTGYQVEV 155 +++E+V+ H+G+ NE+ D LA+ AA NP + + + Sbjct: 133 GGSVEFEYVEAHSGNWFNEKADRLAKKAAFKNPLYSNYDFNYHM 176 >UniRef50_Q046W4 RNase HI n=5 Tax=Lactobacillus RepID=Q046W4_LACGA Length = 251 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 65/121 (53%), Gaps = 8/121 (6%) Query: 25 ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE----HCEVILSTDSQYVRQGITQ 80 ++ ++G S G TNN+MEL+ I ALE L E ++ DSQYV GI + Sbjct: 126 LIEWQGGRTYGSGGEFGATNNKMELLGLINALEKLLELKFNDKHLLFVLDSQYVLNGINK 185 Query: 81 -WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK-WEWVKGHAGHPENERCD-ELA 137 WI WKKRGWK A+ P+ N W++LD+ LG + W KGHA + N D EL Sbjct: 186 HWIEGWKKRGWKRAN-GPLINASEWKKLDSLLGHFSDSTFSWTKGHADNEGNVFVDHELN 244 Query: 138 R 138 R Sbjct: 245 R 245 >UniRef50_B2AS39 Predicted CDS Pa_1_22230 n=2 Tax=Sordariomycetes RepID=B2AS39_PODAN Length = 334 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 21/158 (13%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT----------TNNRMELMAAIV 54 + ++TDG+ GN I Y F AG R TN R ELMA ++ Sbjct: 175 IVVYTDGAAPGNGKRHAAAGIGVY------FGAGDPRNISKRLPGPLQTNQRAELMAILL 228 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL+A V + TDSQY +T+W W + GW +A VKN D+ + + A + + Sbjct: 229 ALQAFDPAESVEIRTDSQYSIDCVTKWYRGWVRNGWLSAKGAAVKNDDIIKPIRALIDER 288 Query: 115 -----QIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + K+ V GH+G P N+ D LA A P +E Sbjct: 289 DAVGARTKFTKVAGHSGDPGNDAADRLAVLGAQLPVVE 326 >UniRef50_C0QLK2 RnhA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLK2_DESAH Length = 201 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 17/140 (12%) Query: 7 IFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE- 64 I+TDG+C GNPGP G G +++ S TNN EL A + +E +K+H E Sbjct: 74 IYTDGACSGNPGPAGSGVVVIQNDIIVHEISESLGPATNNIAELTAIKLGIEFVKDHHET 133 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVK 122 V L TDS+Y I NWK + NV+L + + + + +K VK Sbjct: 134 PVTLYTDSRY---AIGILTMNWKAKA----------NVELVESIRKLMKPFKRLKVVHVK 180 Query: 123 GHAGHPENERCDELARAAAM 142 GH+GHP NER D LA +M Sbjct: 181 GHSGHPGNERADLLAVRGSM 200 >UniRef50_C5S227 Ribonuclease H n=2 Tax=Actinobacillus minor RepID=C5S227_9PAST Length = 188 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 17/159 (10%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILR--YRGREKTF---SAGYTRTTNNRMELMAAIVAL 56 ++ V+++TDGSC + G G I Y +T S GY + NNRMEL+A + L Sbjct: 1 MRNVQLYTDGSCSSHLKGKGLGGIGYILYFPDNQTLEQGSKGYYLSNNNRMELIAVLEGL 60 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 ++LK+ V + TDSQ+V GI + + ++ + P DLW++L + QH+I Sbjct: 61 KSLKKPHNVKIITDSQFVEAGIQKLL---------SSLELPKSEQDLWRKLSLLIQQHKI 111 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 + HP+ E+C +LA A PT D G EV Sbjct: 112 SCSR---SSSHPQIEQCHKLANKARETPTTYDLGIIQEV 147 >UniRef50_A8EUW9 Ribonuclease HI n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUW9_ARCB4 Length = 268 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 8/145 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG-YTRT-TNNRMELMAAIVALE-AL 59 + ++I+ DG+C GNPG G G ++ + G Y TNN EL A AL A Sbjct: 100 EHIKIYCDGACSGNPGNAGSGIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQALTIAS 159 Query: 60 KEHCEVILS--TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + H E ++S TDS+Y IT W ++WKK GW + +KN++L Q + + K Sbjct: 160 QTHSENVISIFTDSKYAIDCITTWAYSWKKNGW-SKKGGEIKNLELIQEAHYLYEKIKSK 218 Query: 118 WEW--VKGHAGHPENERCDELARAA 140 E VKGH+G NE D +A A Sbjct: 219 IEITHVKGHSGIEGNELADRMAVNA 243 >UniRef50_Q0TWR7 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0TWR7_PHANO Length = 319 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 I TDGS N P + Y G R G + TN R ELMA +ALE Sbjct: 22 INTDGSSFRNGKPDAIAGVGVYFGPNDKRNTGQPLGPGKQTNQRAELMAVKIALEKAPID 81 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-----IK 117 V++S+DS+Y +T W+ WK+R WK + +N +L Q + + Q Sbjct: 82 QVVLISSDSRYAINCLTDWLPLWKQRSWKKVEGIFKENTELIQSIVKRMETRQKFNALTY 141 Query: 118 WEWVKGHAGHPENERCDELA 137 + WVKGH+G P NE D+LA Sbjct: 142 FWWVKGHSGDPGNEFADKLA 161 >UniRef50_UPI0001925315 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925315 Length = 255 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 6/141 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +++DG CL N G + Y G + + + TN + EL+AA ALE E Sbjct: 111 VYSDGCCLSNGSNFAVGGVGVYWGPYHPKNVSEYLDVEQPTNQKAELVAACRALETAIEM 170 Query: 63 --CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EV L TDS Y + +T+WI NW+ GWK + V N + RL + + W Sbjct: 171 NLPEVELRTDSMYTIKAMTEWIQNWESNGWKNSSGGNVVNKEEMLRLSELCAKISVTWVH 230 Query: 121 VKGHAGHPENERCDELARAAA 141 + GH G NE+ D+LA A Sbjct: 231 IPGHKGVYGNEQADQLANQGA 251 >UniRef50_C9SF93 Ribonuclease H n=2 Tax=Sordariomycetes RepID=C9SF93_VERA1 Length = 328 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAIVALEALK 60 + I+TDGS L N G + + G R + TN R EL A I ALE Sbjct: 178 LAIYTDGSSLANGKVGAAAGVGVFFGVDDARNLSERLEGEPQTNQRAELTAIIRALEIAP 237 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK--- 117 + +V + TDSQY +T W W+K+ W + +PVKN DL + + + + + Sbjct: 238 DEQDVQIFTDSQYSINCVTSWYKGWQKKDWHNSKGEPVKNRDLVEEVRELIETREAEGAS 297 Query: 118 --WEWVKGHAGHPENERCDELARAAAMNP 144 + WVKGHA + N D LA A A P Sbjct: 298 TVFTWVKGHADNVGNTAADHLAVAGARMP 326 >UniRef50_A8ZTA6 Ribonuclease H n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTA6_DESOH Length = 230 Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/138 (38%), Positives = 66/138 (47%), Gaps = 15/138 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK-EHC 63 +++FTDG+ GNPGP G G +L Y +KT S TNN EL A AL +K + Sbjct: 100 IQVFTDGAASGNPGPAGIGVLLIYGNSQKTISRYIGHATNNIAELKAIEAALLEIKNKKL 159 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVK 122 V L TDS Y +T GWK KNV+L + + +K VK Sbjct: 160 PVRLFTDSAYSLGALT--------LGWKAQ-----KNVELIAGIQKLMRTFSDLKIFKVK 206 Query: 123 GHAGHPENERCDELARAA 140 GHAG ENE D LA A Sbjct: 207 GHAGMAENETADRLATEA 224 >UniRef50_C6VIU9 Ribonuclease H (Putative) n=4 Tax=Lactobacillus RepID=C6VIU9_LACPJ Length = 294 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%) Query: 34 TFSAGYTRTTNNRMELMAAIVALEALKEHCE----VILSTDSQYVRQGITQ-WIHNWKKR 88 T SAG TNNRME+MA + ALE L++ + ++ DSQYV +T+ W+ WK+R Sbjct: 108 TDSAGEWGATNNRMEIMAFLRALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRR 167 Query: 89 GWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVKGHAGHPENERCDELARAA-----AM 142 GWK ++ P+ N +LW+ +D L + + W KGHA + N D L A Sbjct: 168 GWKRSN-GPLVNAELWREVDRLLPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQMHAG 226 Query: 143 NPTLEDTGYQVE 154 PT TG ++ Sbjct: 227 QPTQASTGAKIS 238 >UniRef50_A1D7S4 RNase H domain protein n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D7S4_NEOFI Length = 321 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 18/122 (14%) Query: 4 QVEIFTDGSCLGN--PGP-GGYGAILRYR--GREKTFS--------AGYTRT-TNNRMEL 49 ++ I+TDG+CLGN P G G + R GR F+ G+ R T+NR EL Sbjct: 148 EMLIYTDGACLGNGQANPRAGCGVVFREERPGRMGHFAFALELQGPTGHPRPQTSNRAEL 207 Query: 50 MAAIVALEAL----KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 A I AL+ + +++++TDS+YV +G T WI W + GW+T+ +PVKN DLW+ Sbjct: 208 RAVIAALQFRIWPGEGWTKIVIATDSEYVVEGATSWIKGWVRNGWRTSRGRPVKNKDLWK 267 Query: 106 RL 107 L Sbjct: 268 CL 269 >UniRef50_Q034K7 RNase H with double-stranded RNA/RNA-DNA hybrid binding domain n=8 Tax=Lactobacillus RepID=Q034K7_LACC3 Length = 160 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 19/160 (11%) Query: 1 MLKQVEIFTDGSC--LGNPGPG--------GYGAILRYRGREKTFSAGYTRTTNNRMELM 50 M + + ++TDG GN G + A+L Y EK S G TNN ME+M Sbjct: 1 MAESIVLYTDGGNRNTGNQAGGSVRPTDKSAWAALLIYGDHEKMLSDGDYGRTNNYMEIM 60 Query: 51 AAIVALEALKE-HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLD 108 A I L+ALK V + +DS YV + Q W W++ W+ KPVKN +LWQ L Sbjct: 61 AVIQGLKALKRTDIPVDVYSDSAYVINTMQQRWWVKWQQNNWRNH-GKPVKNAELWQALL 119 Query: 109 AALGQHQ-IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + + + I + VKGHA + N R D AA+N T++ Sbjct: 120 HQVNRFETITFHKVKGHATNRNNNRVD-----AALNQTMD 154 >UniRef50_C0QFZ9 RnhA1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFZ9_DESAH Length = 219 Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/139 (35%), Positives = 66/139 (47%), Gaps = 15/139 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 ++I+TDG+ GNPGP G G +L Y ++ S R TNN EL A LE LK Sbjct: 89 IQIYTDGASSGNPGPAGLGVVLLYGDHKREISESIGRATNNVAELNAIKRGLELLKRTDL 148 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVK 122 + + TDS Y I + W KP N +L + +G+ Q++ VK Sbjct: 149 PIEIHTDSTYC---IGVLVKGW----------KPAMNQELILGIRKLMGRFKQLRLVKVK 195 Query: 123 GHAGHPENERCDELARAAA 141 GH+G NER D LA A Sbjct: 196 GHSGVQGNERADALATAGV 214 >UniRef50_B0CND0 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CND0_LACBS Length = 561 Score = 71.2 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 11/148 (7%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEAL-KEH 62 +++DG+C GN G + + G + TNNR EL+A LE+ + Sbjct: 95 VYSDGACKGNGKVGSVAGVGVWWGHNDPRNIAERCPGDQTNNRAELIAIARVLESTPRSK 154 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL------GQHQI 116 +++ TDSQY WI NW + GW + K+PVKN + + + A L GQ ++ Sbjct: 155 KPLLIKTDSQYSINCFQNWISNWSRNGWVNSSKEPVKNAGIIRYISALLDLRAKSGQ-KV 213 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNP 144 + ++VKGH+G N+ D A P Sbjct: 214 RLQYVKGHSGDTGNDGADAQANQGTTQP 241 >UniRef50_B0WK63 Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0WK63_CULQU Length = 186 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC- 63 V ++TDGS GN ++ Y G +A R TNN E +AA +A+ K+ Sbjct: 21 VYVYTDGSWEGNGTAAACAGLVVYFGEGHALNAVSGRATNNCGEFLAAALAIRLTKQQGI 80 Query: 64 -EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA-----ALGQHQIK 117 + ++TDS+++ IT+W+ WK+ WK + KPVKN ++ LD A +IK Sbjct: 81 KRLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQELAEKSIKIK 140 Query: 118 WEWVKGHAGHPENERCD 134 W H NER D Sbjct: 141 WNHADAHCVILGNERAD 157 >UniRef50_Q9X7R6 Ribonuclease HI n=8 Tax=Actinomycetales RepID=RNH_STRCO Length = 231 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 4/143 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKT-FSAG-YTRTTNNRMELMAAIVALEA 58 M ++ DG+ GNPGP G+ ++ + AG + TNN EL A L + Sbjct: 1 MRERAVAACDGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNNIAELTALERLLAS 60 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + + DSQY + +T W+ WK+ GWKTA KPV N +L R+D L +++ Sbjct: 61 TDPDVPLEVRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANRELVVRIDELLDGRSVEF 120 Query: 119 EWVKGHAGHPENERCDELARAAA 141 +V H + +R ++ A AA Sbjct: 121 RYVPAH--QVDGDRLNDFADRAA 141 >UniRef50_A9EZR8 Ribonuclease H n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EZR8_SORC5 Length = 250 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 15/138 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V ++ DG+C GNPGP G G ++ GR S TNN EL A + +LE + E Sbjct: 111 VIVYADGACSGNPGPAGLGVVIIDGGRRIERSEFLGTATNNIAELTAILRSLEEVDEPGR 170 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVK 122 +++ TDSQY G+ Q +GWK N +L L AL + + + +V Sbjct: 171 PIVIHTDSQY-SIGVLQ-------KGWKAK-----ANTELIASLRGALAARPRARLVYVP 217 Query: 123 GHAGHPENERCDELARAA 140 GHAG NER D LAR A Sbjct: 218 GHAGVLLNERADALAREA 235 >UniRef50_UPI000180BF60 PREDICTED: similar to predicted protein n=1 Tax=Ciona intestinalis RepID=UPI000180BF60 Length = 282 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 7/150 (4%) Query: 7 IFTDGSCLGNPGPG---GYGAILRYRGREKTFSAGYTRT-TNNRMELMAAIVALEALKE- 61 ++TDG+C N G GYG + + FSA TN R E+ A A++ + Sbjct: 134 VYTDGACSKNGRKGSRAGYG-VWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDV 192 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 H ++++ TDS++V IT+W+ W ++GW AD KPV + +Q + + + +K+E Sbjct: 193 GHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKINVKFEH 252 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTG 150 V GH G+ NE D+LA A P L + G Sbjct: 253 VFGHRGNYGNEMADKLAVQGATMPYLLNIG 282 >UniRef50_Q03HC1 RNase HI n=3 Tax=Lactobacillaceae RepID=Q03HC1_PEDPA Length = 272 Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 11/129 (8%) Query: 25 ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL----KEHCEVILSTDSQYVRQGITQ 80 +++ G + S G TNNRME+MA I L+ + E V++ DS+YV I + Sbjct: 103 LIQKDGESISGSNGEFGATNNRMEIMALINGLQKIIDRYGEKAAVLVVADSKYVLDAIQR 162 Query: 81 -WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERCDELAR 138 W+ W++RGWK A+ + V N +LWQ + + L + +++ W KGHA + N D+L Sbjct: 163 NWLSGWQRRGWKKANGEIVANKELWQAVASILKRMPNLEYRWTKGHATNEGNVFVDQL-- 220 Query: 139 AAAMNPTLE 147 +N T++ Sbjct: 221 ---LNKTMD 226 >UniRef50_A9CET6 Ribonuclease H n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CET6_AGRT5 Length = 157 Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 11/149 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTR-TTNNRMELMAAIVALEAL 59 M + IFTDGS GG+ ++ G + + G +NN E++A + A+ + Sbjct: 1 MSDALHIFTDGSFDDATRSGGWAFVVHEGGDQVHSATGKAAGASNNSFEVLAVLNAMSWV 60 Query: 60 KEHC---EVILSTDSQYVRQGITQWIHNWKKRGWKT------ADKKPVKNVDLWQRLDAA 110 +V L TD+ +V +G ++ W+ GWK A ++P+ + ++WQ+LD Sbjct: 61 AAEAPTRDVTLWTDAVHVIEGCRRYRAIWRNNGWKRITPNQRARRRPIPDSEIWQQLDKL 120 Query: 111 LGQH-QIKWEWVKGHAGHPENERCDELAR 138 L +H + EW KGH+G NE D LAR Sbjct: 121 LERHPHVAVEWCKGHSGLVGNEHADALAR 149 >UniRef50_Q4P0S4 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P0S4_USTMA Length = 1122 Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 7 IFTDGSCLGN---PGPGGYGAI-----LRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 ++ DGS +GN G+G L + + + TNNR ELMA I A++ Sbjct: 884 VYCDGSSIGNGRTTARAGWGVFFEDPELHHLNESRRLPG--DKQTNNRAELMALIRAVQL 941 Query: 59 L-KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQH-Q 115 + ++++ TDS+Y Q +T+W+ W++ G+KT V+N DL LD L G+H + Sbjct: 942 CPNDGRQLLIMTDSKYSMQTVTEWLPKWRQNGFKTLAGADVQNQDLIVELDKQLSGRHPR 1001 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNP 144 K E VK H G NE D +A+ A P Sbjct: 1002 PKLEHVKAHVGIHGNEIVDRMAKYGASLP 1030 >UniRef50_A7EQD5 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7EQD5_SCLS1 Length = 319 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 16/120 (13%) Query: 4 QVEIFTDGSCLGN-----PGPGGYGAILRYRGREKTFSAGYTR----TTNNRMELMAAIV 54 ++ I+TDG+CL N G G+ A ++ + + + G T T+NR EL A I Sbjct: 141 EILIYTDGACLSNGLSNLRGGCGFIASPTHKVKFRLENTGPTDEPHPQTSNRAELRAVIA 200 Query: 55 AL-------EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 AL + L ++++TDS+YV G T+ I W RGW+T+ KPVKN DLW++L Sbjct: 201 ALQYHYWQGDCLGSWTRLVIATDSEYVVLGATERIRGWITRGWRTSAGKPVKNQDLWKKL 260 >UniRef50_Q54222 Putative RNaseH n=1 Tax=Streptomyces galbus RepID=Q54222_STRGB Length = 133 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 3/106 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILR---YRGREKTFSAGYTRTTNNRMELMAAIVALE 57 M ++V DG+ GNPGP G+ ++ R + + R TNN EL A L Sbjct: 1 MRERVVAACDGASKGNPGPAGWAWVVSDDDERTPARWEAGPLGRATNNVAELTALERLLT 60 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDL 103 A+ + + DSQY + +T W+ WK+ GWKTA KPV N DL Sbjct: 61 AVDPDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANQDL 106 >UniRef50_C1BPL6 Ribonuclease H1 n=1 Tax=Caligus rogercresseyi RepID=C1BPL6_9MAXI Length = 257 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRG--REKTFSAGYT--RTTNNRMELMAAIVALEALK 60 V++FTDG+C N G I Y G K S + TNN E+ A A++++K Sbjct: 114 VKVFTDGACSNNGRRGAVAGIGAYFGPGSPKNISEPVSGDHQTNNSAEIQAISQAIQSVK 173 Query: 61 EH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 +V++ TDS++ + W+ WK+ GWK + V N + +LD +K+ Sbjct: 174 NEGRTKVVIYTDSKFAINSVELWLEGWKQNGWKKSSGGDVINKADFIQLDDIRKGMSVKF 233 Query: 119 EWVKGHAGHPENERCDELARAAA 141 V+GH G NE D+LAR A Sbjct: 234 IHVRGHQGIHGNEMADQLAREGA 256 >UniRef50_A8B979 Ribonuclease H n=2 Tax=Giardia intestinalis RepID=A8B979_GIALA Length = 352 Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 11/139 (7%) Query: 8 FTDG-SCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 FTDG S GPGG+G +L F+ Y TTNNRMEL + AL + + + Sbjct: 199 FTDGGSTPSAGGPGGWGCLLFNATEMHVFARSYKSTTNNRMELRGILCALLNVPQGSVLH 258 Query: 67 LSTDSQYVRQGITQWIHNWKKRGW---------KTADKKPVKNVDLWQRLDAALGQHQIK 117 + +DSQY W+ WKK+G + KP+ N DL + A + +K Sbjct: 259 IYSDSQYAINCCRVWLTQWKKKGLLCPQNPNRKDIINAKPL-NKDLLLWIYAEMQSRTVK 317 Query: 118 WEWVKGHAGHPENERCDEL 136 + VKGH+G+ N+ D L Sbjct: 318 FVHVKGHSGNSLNDFVDGL 336 >UniRef50_Q6CH42 YALI0A12705p n=1 Tax=Yarrowia lipolytica RepID=Q6CH42_YARLI Length = 236 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 13/145 (8%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEAL 59 +V ++TDG+C N G + Y G + +R TN R EL A A+E + Sbjct: 87 RVPVYTDGACHNNQGSNARAGVGVYFGPGHPDNVSRPVQGSRQTNQRAELEAIHDAVETI 146 Query: 60 KEHCEVI---LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ----RLDAALG 112 + I + TDS Y + +W NW++ W T+ +PV++ DL + RL+ LG Sbjct: 147 HRRNDGINYEVKTDSAYAQNAFNKWGSNWQQNNWTTSKNEPVQHRDLIEPTLNRLN-DLG 205 Query: 113 QHQIKWEWVKGHAGHPENERCDELA 137 +++ VKGH+G+P N+ D+LA Sbjct: 206 D-RVEISKVKGHSGNPGNDAADKLA 229 >UniRef50_C4WXR8 ACYPI28043 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WXR8_ACYPI Length = 157 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTR---TTNNRMELMAAIVALEALK 60 V ++ DG+C N G + + + T TNN E+ AA+ A++ L Sbjct: 10 DVVVYVDGACPRNGTRGARAGVGVWFDDFHDLNVSSTVPGIQTNNNAEIYAAVKAIDMLL 69 Query: 61 EHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQI 116 ++ + V + TDS ++ + +WI+ WK GW+ V N D+ ++LD+ + + Sbjct: 70 KYTDEYRVEIMTDSMFLCNCMYKWINKWKCNGWRNCKGNTVANKDMLEQLDSCIKAMDSV 129 Query: 117 KWEWVKGHAGHPENERCDELARAAA 141 K+ +V+ H H N++ D+LAR A Sbjct: 130 KFTYVRAHNKHYGNDQADKLARQGA 154 >UniRef50_D2EJR4 RNase HI n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EJR4_PEDAC Length = 252 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 6/116 (5%) Query: 25 ILRYRGREKTFSAGYTRTTNNRMELMAA----IVALEALKEHCEVILSTDSQYVRQGITQ 80 +L+ +E + S G TNNRMEL A AL + + + + +DS+Y+ IT+ Sbjct: 113 LLKKDDQEYSQSGGEFGATNNRMELTALWRGLETALAKVGKDAPITVISDSKYILNAITK 172 Query: 81 -WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERCD 134 W+ W++RGWK + PV N +LWQ++ L Q +++ W KGHA + N D Sbjct: 173 KWLAGWQRRGWKKSTGDPVANQELWQQIAKLLPQFTDLQFLWTKGHATNQGNIFVD 228 >UniRef50_Q6C0A0 YALI0F26543p n=1 Tax=Yarrowia lipolytica RepID=Q6C0A0_YARLI Length = 281 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 19/146 (13%) Query: 8 FTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT------TNNRMELMAAIVALEALKE 61 +TDG+C N G G I Y G + Y+ TN R EL A + ALE + Sbjct: 130 YTDGACENNGGHRPKGGIGVYFG--ELHPCNYSGPLVGDVQTNQRAELSAILKALEIIDN 187 Query: 62 HCEVI---LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ----- 113 E + + +DSQY +QW+ WKK G+KT K V+N DL +D L + Sbjct: 188 RGENLNWQIRSDSQYAVNCCSQWLEGWKKNGFKTGKGKEVENQDLILAIDEYLQKPRTRI 247 Query: 114 -HQIKWEWVKGHAGHPENERCDELAR 138 +I ++ + GHAG ENE D LA+ Sbjct: 248 GTRITFKHIPGHAG--ENEEVDALAK 271 >UniRef50_C2KDF2 Ribonuclease n=16 Tax=Lactobacillus RepID=C2KDF2_9LACO Length = 267 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/110 (41%), Positives = 58/110 (52%), Gaps = 8/110 (7%) Query: 36 SAGYTRTTNNRMELMAAIVALEALKE----HCEVILSTDSQYVRQGITQ-WIHNWKKRGW 90 S G TNN+ME A I AL+ L E ++ DSQYV I + W+ WKKRGW Sbjct: 153 SGGEYGATNNKMEQTALINALKKLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGW 212 Query: 91 KTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERCD-ELAR 138 + + P+ NV WQ LD L + +EW KGHA + NE D EL R Sbjct: 213 RRS-SGPLANVAEWQELDRLLKEFPDSTFEWTKGHANNRGNEFVDHELNR 261 >UniRef50_Q0URN5 Putative uncharacterized protein n=2 Tax=Leotiomyceta RepID=Q0URN5_PHANO Length = 613 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 5/113 (4%) Query: 40 TRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVK 99 +R TN R EL A AL+ + ++ TDS Y + +T+W W+K WK++ K V+ Sbjct: 270 SRQTNQRAELTAVARALDHIPIDRSALIHTDSNYSIKCLTEWFQKWEKNNWKSSSGKDVE 329 Query: 100 NVDLWQRLDAALGQHQI-----KWEWVKGHAGHPENERCDELARAAAMNPTLE 147 N DL + + A + + + ++W+KGHA P N D LA + T E Sbjct: 330 NKDLVEPIIARIRERDMCRAKTDFKWIKGHANDPGNVAADLLAVQGSRTSTPE 382 >UniRef50_C4QWX0 Ribonuclease H1 n=1 Tax=Pichia pastoris GS115 RepID=C4QWX0_PICPG Length = 274 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/154 (33%), Positives = 69/154 (44%), Gaps = 20/154 (12%) Query: 7 IFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMA---AIVALE--- 57 I+TDG+ GN GGYG + TN R EL A A++ +E Sbjct: 119 IYTDGATRGNGKFGAKGGYGVFFKENDLRNISKPLTGVQTNQRAELSAVRDALIIIEKDL 178 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD--------- 108 A + TDS+Y IT+W+ WK+ W+TA PV+N DL + Sbjct: 179 ASGSKKHYTIRTDSRYTINSITKWVTKWKQNDWRTA-TGPVQNRDLIEPCTNLIESVNSK 237 Query: 109 -AALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 LG + E+VKGH+G NE D+LA A A Sbjct: 238 YKELGMPPLNIEYVKGHSGDYGNEMADKLATAGA 271 >UniRef50_A8XYS2 C. briggsae CBR-RNH-1.3 protein n=2 Tax=Caenorhabditis briggsae RepID=A8XYS2_CAEBR Length = 150 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 22/145 (15%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMA----AIVALEALKE 61 +I TDG+ N R +++ S+ Y TNNR EL A +A + Sbjct: 12 DINTDGATSNND-----------RNLDRSGSSAYGNQTNNRYELEAIREATRIASQVPDR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-----HQI 116 H + ++TDSQY + W NW++ GW+T+ +PVKN +L + +D + ++ Sbjct: 61 H--ISINTDSQYAVDSLNTWKSNWEQNGWRTSRGEPVKNQELIRDIDRNINNLRDSGKKV 118 Query: 117 KWEWVKGHAGHPENERCDELARAAA 141 + + GH+ N D LAR AA Sbjct: 119 TLKHISGHSNDYHNTEADRLARQAA 143 >UniRef50_B9WJ33 Ribonuclease H, putative n=6 Tax=Saccharomycetales RepID=B9WJ33_CANDC Length = 266 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 70/167 (41%), Gaps = 36/167 (21%) Query: 7 IFTDGSCLGN----PGPGGYGAILRYRGREKTFSAGYT----------RTTNNRMELMAA 52 ++ DG+ GN P GYG Y G + +A + TN R EL Sbjct: 98 VYVDGAARGNGQTSKAPSGYGV---YYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGV 154 Query: 53 IVALEAL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 AL+ + K + +DS+Y Q I +W NW K GWK + +PV N DL Q Sbjct: 155 KHALKNIHNDLQSGKATGRTEIHSDSKYAIQSINEWSSNWAKNGWKNSKGEPVANKDLIQ 214 Query: 106 RLDAALGQH-----------QIKWEWVKGHAGHPENERCDELARAAA 141 AL + +K+ VKGHAG P NE D LA A Sbjct: 215 ET-VALKNNINKTYQDKNWGNLKFVHVKGHAGDPGNEAADRLANQGA 260 >UniRef50_Q484S6 Ribonuclease HI n=3 Tax=Alteromonadales RepID=Q484S6_COLP3 Length = 272 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY--TRTTNNRMELMAAIVALEALKEH 62 +EI+ DG+C NPG G G + G+ + G TNN EL + A + + Sbjct: 101 IEIYCDGACSPNPGKSGTGLAVYELGKVTSLYYGLYLPNGTNNTAELSGMLSAFQIAQHF 160 Query: 63 CE------VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QH 114 + + + +DS+Y IT+W WK +GW + +KN+ L Q+ A Sbjct: 161 IDKNSEQSICILSDSKYSIDSITKWAKGWKAKGWTRGKGEEIKNLALIQQCYALYKTMHT 220 Query: 115 QIKWEWVKGHAGHPENERCDELA 137 +I VKGHA NE D +A Sbjct: 221 KITIRHVKGHANIEGNELADRMA 243 >UniRef50_Q8SD07 PHIKZ155 n=2 Tax=phiKZ-like viruses RepID=Q8SD07_9CAUD Length = 482 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 15/115 (13%) Query: 35 FSAGYTRTTNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKT 92 F + TNN EL AAI A + E + + DS+YVR+G+T ++ W K W Sbjct: 65 FGSVTNNPTNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWIKSNWIK 124 Query: 93 ADKKPVKNVDLWQRLDAALGQHQIKWE---------WVKGHAGHPENERCDELAR 138 +D PV N DLW++ + + + KWE WV+GH G NE+ D A+ Sbjct: 125 SDGTPVANQDLWKQ----MVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAK 175 >UniRef50_A2QI95 Function: the ribonuclease H n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QI95_ASPNC Length = 299 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 23/127 (18%) Query: 4 QVEIFTDGSCLGN------PGPGGYGAILRYRGREKTFSAG-------------YTRTTN 44 Q ++T G+C N G+ + R + + + G Y R T+ Sbjct: 121 QCLVYTAGACHDNWKGDENYAKAGWSFVYRPQNPSRNITGGVAGRLEMTGPTKVYHRQTS 180 Query: 45 NRMELMAAIVALEALKEHC----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKN 100 R EL A I AL+ L ++++TDS YV G T WI W +GW++A KP+KN Sbjct: 181 TRAELRAVIAALKYLSHDGNTFDSLVIATDSSYVVNGATLWIRKWLSKGWRSAIGKPIKN 240 Query: 101 VDLWQRL 107 DLW+ L Sbjct: 241 KDLWEAL 247 >UniRef50_Q7S4S2 Predicted protein n=2 Tax=Sordariales RepID=Q7S4S2_NEUCR Length = 327 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 61/150 (40%), Gaps = 21/150 (14%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT----------TNNRMELMAA 52 K V I+TDGS GN G + Y F G+ TN R EL A Sbjct: 176 KPVIIYTDGSARGNGKVGAMAGVGVY------FCGGFRENISERLQGPVQTNQRAELTAV 229 Query: 53 IVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 + ALEA+ + L TDSQY +T W W K W+ + V N DL + + Sbjct: 230 LRALEAIPDTQNCELRTDSQYTINCVTSWYKKWMKNEWRNTKGEEVSNQDLIVAIRKKID 289 Query: 113 QH-----QIKWEWVKGHAGHPENERCDELA 137 + K+ WVKGH N D LA Sbjct: 290 TRDRKAAETKFVWVKGHGTDEGNIAADMLA 319 >UniRef50_Q9XVE6 Protein C04F12.9, confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q9XVE6_CAEEL Length = 139 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%) Query: 6 EIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTR--TTNNRMELMAAIVALEALK 60 + +TDGS LGN GGYG + K S Y TNNR EL A A + + Sbjct: 4 DFYTDGSALGNGQQGSRGGYGVHVP-SDTSKNVSGSYPHGPQTNNRYELEAIKHATQMAR 62 Query: 61 E--HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQ- 115 + V + TDS+ + +T+W NWK G+KT+ + VKN DL + +D + +H Sbjct: 63 DVPDSHVRIHTDSKNAKDSVTKWNDNWKSNGYKTSSGQDVKNQDLIRDIDRNVQALKHSG 122 Query: 116 --IKWEWVKGHA 125 +++E V+GH+ Sbjct: 123 KTVEFEHVRGHS 134 >UniRef50_A8PI66 Predicted protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8PI66_COPC7 Length = 287 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 13/118 (11%) Query: 3 KQVEIFTDGSCLGN------PGPGG---YGAILRYRGREKTFSAGYTRTTNNRMELMAAI 53 Q +F DG+C N P G +G Y R T+NR EL +AI Sbjct: 73 SQAMVFADGACFDNGSSTNTPRAGAAVVFGPSEDYVPIMVGMGVDGVRHTSNRAELRSAI 132 Query: 54 VALE----ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 A+ A + +I++ DS+YV G+T+ IH WK W+ +D KPV N D+W+ L Sbjct: 133 CAVGMRNWAGESFENMIIAMDSEYVVLGMTERIHKWKANNWRKSDGKPVANRDMWEAL 190 >UniRef50_C7YX62 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YX62_NECH7 Length = 667 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 21/125 (16%) Query: 4 QVEIFTDGSCLGN---------------PGPGGYGA--ILRYRGREKTFSAGYTRTTNNR 46 +V +TDG+C+ N PG G+ ++ R + + T+NR Sbjct: 279 RVLAYTDGACINNGQLEPRAGWAVVFGKPGSDQEGSQNVVSSRLENEGPFGDDSVATSNR 338 Query: 47 MELMAAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD 102 EL AAI AL H E ++++TDS YV QG T W NW ++GW T VKN D Sbjct: 339 AELRAAIAALRVCDWHDEGFKNIVIATDSSYVVQGATSWAKNWVRKGWTTRVGGNVKNKD 398 Query: 103 LWQRL 107 LW L Sbjct: 399 LWDLL 403 >UniRef50_Q12R78 Ribonuclease H n=22 Tax=Proteobacteria RepID=Q12R78_SHEDO Length = 263 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 11/152 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMEL----MAAIVALEA 58 + I+TDG C NPG G G L ++G+ E + + + TNN EL A ++A Sbjct: 95 IVIYTDGGCEPNPGEAGSGLALYHKGQLTELWYGLYHPKGTNNTAELNALYQALLIAKTK 154 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--I 116 L +V + +DSQY + I++W + WK +GW + + N+D+ + + + + Sbjct: 155 LDAGHKVQIFSDSQYSIKCISEWAYGWKAKGWSRKGGE-IANLDIIKLAHGVFDELKDTL 213 Query: 117 KWEWVKGHAGHPENERCDELARAAAM--NPTL 146 K E V H G NE D ++ A NP Sbjct: 214 KLEHVAAHVGIEGNELADRMSILAITEKNPAF 245 >UniRef50_D0NEW7 Ribonuclease, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NEW7_PHYIN Length = 317 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 10/113 (8%) Query: 41 RTTNNRMELMAAIVALE-ALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADK 95 R TNNR E MAA+ A++ A E E + + +DS + + +T+W+ W+K W +D Sbjct: 201 RATNNRAEYMAALEAMKRANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDG 260 Query: 96 KPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPE-----NERCDELARAAAMN 143 PV+N DL + L A G +I+W VK H + N+ D AR AA++ Sbjct: 261 TPVQNRDLLELLVAEKGSRRIRWTHVKAHTRKQDWRSKWNDVADNAARNAALS 313 >UniRef50_B6B8N1 RNA-directed DNA polymerase n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8N1_9RHOB Length = 580 Score = 62.8 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 64/142 (45%), Gaps = 22/142 (15%) Query: 7 IFTDGSCLGNP------GPGGYGAILRYRGREKTFSAGYTR-TTNNRMELMAAIVALEAL 59 I TDGS G P G A + ++ +E+ +G R TTNNRMEL A I A++++ Sbjct: 439 ISTDGSTAGKSNRDTGLAPVGAWAYINHQTKEE--RSGSDRGTTNNRMELKAVIQAIDSI 496 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 VI+ +DS+YV + N DLWQ +I+ Sbjct: 497 PTGGAVIIRSDSKYVSNAVNN-------------GSIVTSNHDLWQEFVDVSKGREIRVV 543 Query: 120 WVKGHAGHPENERCDELARAAA 141 WVKGH G NE D LAR A Sbjct: 544 WVKGHDGDAFNEAADNLARQTA 565 >UniRef50_C7YSN3 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YSN3_NECH7 Length = 306 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 29/166 (17%) Query: 7 IFTDGSCLGNPGP---GGYGAILRYR-GREKTFSAG----------YTRTTNNRMELMAA 52 IF DG+CL + G G+ + R G + +G Y TNNR EL A Sbjct: 137 IFVDGACLDSGGANPRAGWAIYFKPRSGNDSGMVSGRLELVGPWGDYHEHTNNRAELRAV 196 Query: 53 IVALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD 108 + AL E ++++T S+YV +G T+W+ W GW+T++++ VKN DLWQ Sbjct: 197 LAALRFRNWPGEGFNKLVIATHSEYVAKGATEWVLRWLWNGWRTSNREAVKNRDLWQ--- 253 Query: 109 AALGQHQ------IKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 A LG+ + +K E+ K EN + +A+ AA L D Sbjct: 254 ALLGEFERLEELGLKVEFWK--IPRSENPIANRVAKQAAKEEELRD 297 >UniRef50_A5D9X7 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X7_PICGU Length = 260 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 28/162 (17%) Query: 7 IFTDGSCLGN----PGPGGYGAILRYRGREKTFSAGYTRT------TNNRMELMAAIVAL 56 I+ DG+ GN GYG + G E+ + ++ TN R EL A AL Sbjct: 97 IYVDGAARGNGKVRSPKSGYG-VFYGEGDERNAAVPLSKVDSDRTGTNQRAELHALNHAL 155 Query: 57 EALKEHC-------EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR-LD 108 + + + E I+ +DSQY + + +W WK GW+TA PV N DL ++ +D Sbjct: 156 DDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAVD 215 Query: 109 ---------AALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 A I +V GHAG+ NE D+LA A Sbjct: 216 KVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGA 257 >UniRef50_Q2JHH6 Ribonuclease H n=2 Tax=Synechococcus RepID=Q2JHH6_SYNJB Length = 169 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 7 IFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE---H 62 IFTDG C NPGPGG+ +++ + F G +T+NRMEL I AL + + Sbjct: 20 IFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGN 79 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEW 120 + +DS Q W+ W +GW+ PV+N+DL + L L Q Q++ W Sbjct: 80 GVDTIYSDSHLCVQTYNNWMERWAAQGWRR-RTGPVENLDLVEEL-YQLKQECPQVRVVW 137 Query: 121 VKGHAGHPENERCDEL---ARAAAMNP 144 + H G NE D L ARA P Sbjct: 138 IPAHQGLRWNEYVDGLVAQARARVTVP 164 >UniRef50_B5ZRJ7 Ribonuclease H n=6 Tax=Rhizobium RepID=B5ZRJ7_RHILW Length = 177 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 13/145 (8%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSA--GYTRTTNNRMELMAAIVALEALKEH 62 + +F DG G GG+ + + YR + S G ++NN MEL A + A + Sbjct: 24 LHLFADGCYEPGSGHGGW-SFVAYRDAVEIASGFGGAEDSSNNSMELTAVLRAAMWINSQ 82 Query: 63 CE---VILSTDSQYVRQGITQWIHNWKKRGWKTAD------KKPVKNVDLWQRLDAALGQ 113 I+ +DS Y +G H WK GWK + ++ + N +LW+ +D L Q Sbjct: 83 TAGEAAIIWSDSIYAVKGCNSRRHIWKNNGWKKSSPNGQGRRRTIDNAELWKAVDLQLSQ 142 Query: 114 HQ-IKWEWVKGHAGHPENERCDELA 137 + + W KGH+G NER D LA Sbjct: 143 NALVTIAWCKGHSGVVGNERADALA 167 >UniRef50_C5R9S8 Ribonuclease H n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R9S8_WEIPA Length = 232 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 20/155 (12%) Query: 4 QVEIFTDGSC--LGNPGPGGYGA-------ILRYRG---REKTFS---AGYTRTTNNRME 48 Q IFTDG GN G A I Y G E ++ A + RT NN ME Sbjct: 75 QYYIFTDGGSRNTGNTAGGHVKATDKAGWAIAIYHGSNLNEPVYTDSGADWGRT-NNEME 133 Query: 49 LMAAIVAL-EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 ++A I AL + K V + +DS+YV +T W++NW GW+ + + + N+ WQ++ Sbjct: 134 MLALINALLQTAKVSTPVTIVSDSKYVLDTVTNWMYNWAANGWRKSSGE-IANLKAWQQI 192 Query: 108 DAALG--QHQIKWEWVKGHAGHPENERCDELARAA 140 A + ++ + WVKGHA N D L A Sbjct: 193 YALIKPLAARLSFIWVKGHATSHGNITVDHLLNDA 227 >UniRef50_Q7MNB1 Ribonuclease HI n=4 Tax=Vibrio vulnificus YJ016 RepID=Q7MNB1_VIBVY Length = 178 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 2/68 (2%) Query: 42 TTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNV 101 T+N +EL+A + ++ ++ ++ T S + +G +WI WK++GW+ +DKKPV N Sbjct: 79 TSNTELELIALVECMQYARDG--DVIYTSSDFCVRGFNEWIDTWKQKGWRKSDKKPVANR 136 Query: 102 DLWQRLDA 109 DLWQ++DA Sbjct: 137 DLWQQVDA 144 >UniRef50_A5E5Q5 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E5Q5_LODEL Length = 321 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 34/170 (20%) Query: 3 KQVEIFTDGSCLGN----PGPGGYGAILRYRGREKTFSAGYTRT----------TNNRME 48 K +I+TDG+ GN GYG Y GR +A + TN R E Sbjct: 146 KVTKIYTDGASRGNGKSRTAASGYGV---YYGRNDPRNAAVPLSSVDDIHTVAPTNQRAE 202 Query: 49 LMAAIVALEALKEHC-------EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNV 101 L A AL+ +K + + +DS+Y Q + +W + W K GW KPV N Sbjct: 203 LHAIHHALKNIKNELATAPTGKQYSIHSDSKYAMQCVDEWSNKWLKNGWTNTAGKPVANA 262 Query: 102 DLWQ----------RLDAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 D+ + + G +++ VKGHAG NE D LA A Sbjct: 263 DIIKEAVQLKNEINEIHQQRGHQPLQFVHVKGHAGDERNEAADRLANIGA 312 >UniRef50_A5DAG3 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii RepID=A5DAG3_PICGU Length = 152 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 23/143 (16%) Query: 21 GYGAILRYRGREKTFSAGYTRT-----TNNRMELMAAIVALEALKEHC-------EVILS 68 GYG + G E+ + + T+ R EL A A+ + + E ++ Sbjct: 8 GYG-VFYGDGDERNVAVALSSVDDIPGTSQRAELHALDHAVSNIADFLDEYNPDKEYVIH 66 Query: 69 TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL----------GQHQIKW 118 TDSQYV + T WI WK GW T+ K V N DL +R+ + L G +K Sbjct: 67 TDSQYVIKATTVWIKKWKSNGWTTSYGKSVANQDLIKRIFSNLNRINKELEDNGFSAVKL 126 Query: 119 EWVKGHAGHPENERCDELARAAA 141 E V GH+G NE D+LA A Sbjct: 127 EHVAGHSGDYGNEMADQLANEGA 149 >UniRef50_A5E5Q8 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E5Q8_LODEL Length = 331 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 28/175 (16%) Query: 1 MLKQVEIFTDGSCLGNP----GPGGYGAIL-RYRGREKTF------SAGYTRTTNNRMEL 49 M I+TDG+C GN GYG ++ R K TN R EL Sbjct: 145 MPNVTRIYTDGACRGNNRRRLAASGYGVYYGKHDIRNKAVPLSDVDDVDNIPPTNQRAEL 204 Query: 50 MAAIVALEALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD 102 A + AL + + C + +DS Y + I W W K GW+ K+PV N D Sbjct: 205 HAVLHALRNIDKELDKAIYKCRYAICSDSIYALKCIKIWSAKWLKNGWQNVAKRPVANAD 264 Query: 103 -------LWQRLDAALGQ---HQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 L ++D GQ + +++ V+GH+G+ N+ D LA A +E Sbjct: 265 IIKEAVRLTAKIDDVYGQLGWNSLQFIHVRGHSGNKGNDIADNLASIGADEMAME 319 >UniRef50_A4QYI2 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QYI2_MAGGR Length = 341 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 13/144 (9%) Query: 5 VEIFTDGSCLGN------PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 E++TDGS +GN G G + + R + G TN R EL A + AL++ Sbjct: 187 TEVYTDGSSMGNGKKNSAAGIGVFFGLGDPRNLSEQLHNG--PQTNQRAELTAILRALQS 244 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--- 115 L + V + +DS+Y + W W+ W T+ K V N DL Q + + Q + Sbjct: 245 LGANEGVRIFSDSKYSISCVCDWYKKWQTSNWTTSAGKEVMNKDLIQPIRRLIEQREKRG 304 Query: 116 --IKWEWVKGHAGHPENERCDELA 137 ++ WVKGHA N + D LA Sbjct: 305 VKTEFVWVKGHAATEGNVQADLLA 328 >UniRef50_Q6CGX9 YALI0A15059p n=1 Tax=Yarrowia lipolytica RepID=Q6CGX9_YARLI Length = 225 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSA----GYTRTTNNRMELMAAIVALEALKE 61 E++TDG+C+ N Y G F+ G T TN R EL+A AL+ ++E Sbjct: 73 EVYTDGACIRNGKRDARAGCGVYFGANNPFNESKILGGTLQTNQRAELVAIKRALQLIQE 132 Query: 62 -----HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKN----VDLWQRLDAALG 112 + E+ TDS Y + +T+W W++ GW PV N D+ + L++ Sbjct: 133 WVNGEYYEIY--TDSDYALKCVTEWCDKWERNGWVNCKGYPVSNQDTIKDILKLLNSVGC 190 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAA 141 ++ + E V H+ N DELAR AA Sbjct: 191 RNVLGIEKVLAHSDCEGNNGADELARDAA 219 >UniRef50_Q2HHV6 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=Q2HHV6_CHAGB Length = 786 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 13/114 (11%) Query: 7 IFTDGSCL--GNPGPGG-----YGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVALE 57 ++ DG+C G P P G YG GR EK + T+NR EL AAI AL Sbjct: 407 LYIDGACTDNGQPNPRGGWAVVYGPTDDASGRLEEKGPFGHESVPTSNRAELRAAIAALR 466 Query: 58 ALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 + ++++TDS YV G T W W GW+T + VKN DLW+ L Sbjct: 467 LRNWEQDGFDGMVIATDSSYVVDGATGWTQGWTVNGWRTQSGRAVKNKDLWELL 520 >UniRef50_C1BQR6 Ribonuclease H1 n=2 Tax=Caligus rogercresseyi RepID=C1BQR6_9MAXI Length = 394 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAI--LRYRGREKTFSAGYT--RTTNNRMELMAAIVALEALK 60 V++FTDG+C+ N G G I ++ K S R TNN EL A A++ +K Sbjct: 245 VKVFTDGACIHNGRRGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISRAIQIVK 304 Query: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGW-KTADKKPVKNVDLWQRLDAALGQHQIK 117 ++ + TDSQ+ I + NWKK+ W + + + V+N + LD + IK Sbjct: 305 SDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFLVLDDIMKNMTIK 364 Query: 118 WEWVKGHAGHPENERCDELARAAAMNPTL 146 + +V GH N D+LAR + N Sbjct: 365 FIYVPGHRNIYGNNCADKLARRGSGNTKF 393 >UniRef50_C4QPU4 Phosphoglucomutase, putative n=5 Tax=Schistosoma mansoni RepID=C4QPU4_SCHMA Length = 826 Score = 60.1 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 3 KQVEIFTDGSCLG--NPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALE 57 ++V ++TDGSC G + GYG Y G ++ TNNR E+ A I A++ Sbjct: 123 RRVMVYTDGSCNGAHDDRRAGYGV---YWGPNHPWNVSERLEGEQTNNRAEIEAVICAIK 179 Query: 58 ALK----EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ 113 H ++ TDS++ + T+W W + WK A+ + K + +RL + + Sbjct: 180 QAHIGGITHLGIV--TDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAE 237 Query: 114 H--QIKWEWVKGHAGHPENERCDELARAAAMN 143 +I W V+ H G NE D LA A++ Sbjct: 238 SGIEIIWYHVRSHRGVHGNEEADSLANIGAID 269 >UniRef50_UPI0001908521 putative ribonuclease HI n=3 Tax=Rhizobium etli RepID=UPI0001908521 Length = 212 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 69/148 (46%), Gaps = 21/148 (14%) Query: 5 VEIFTDGSCLGNPGP--GGYGAILRYRGREKTFSA--GYTRTTNNRMELMAAIVAL---- 56 + IF DG C PG GG+ A + YR + S G + NN MEL A + A Sbjct: 60 LHIFVDG-CY-EPGSQHGGW-AFVTYRDAVEIASGFGGVQESANNSMELTAVLKAAIWIN 116 Query: 57 -EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWK------TADKKPVKNVDLWQRLDA 109 EA E + +DS Y +G H WK GWK A ++ + N +LW+ +D Sbjct: 117 SEAAGEAATIW--SDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARRRTIDNAELWKAVDL 174 Query: 110 ALGQHQ-IKWEWVKGHAGHPENERCDEL 136 L Q+ + W KGH+G NER D L Sbjct: 175 QLSQNALVTVTWCKGHSGIAGNERADAL 202 >UniRef50_C9DGJ5 Putative RNaseH ribonuclease n=1 Tax=Deftia phage phiW-14 RepID=C9DGJ5_9CAUD Length = 177 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 24/150 (16%) Query: 2 LKQVEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTR----TTNNRMELMAAIV 54 + V ++TDGS N P G+ ++ G A Y + ++NNR E M I Sbjct: 4 VTDVHVYTDGSSKHNGKPECVAGWSMVIPNLG--DCMYARYGQLAPPSSNNRGEAMGVIA 61 Query: 55 ALE--ALKEHCEVILSTDSQYVRQGITQWIHNWKKRG-WKTADKKPVKNVD----LWQRL 107 A E A ++ TDSQY+++ T+W RG W VKN+D L+ + Sbjct: 62 AAEMFARAPDFRAVIYTDSQYIQKACTEW------RGKWALTQYDGVKNIDMLLPLFNII 115 Query: 108 DAALGQHQIKWEWVKGHAGHPENERCDELA 137 D ++ + +I W VKGHAG P NE D+ A Sbjct: 116 DRSINKPKILW--VKGHAGDPGNELADQYA 143 >UniRef50_A2QYZ3 Catalytic activity: Endonucleolytic cleavage to 5'-phosphomonoester n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QYZ3_ASPNC Length = 366 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 27/129 (20%) Query: 3 KQVEIFTDGSCLGN---PGPGGYGAILRY-----RGREKTF---------SAGYTRTTNN 45 +Q+ ++T G+CL N GG G + R G+ F S T++ Sbjct: 190 RQLLLYTKGTCLNNGEAQPRGGCGVVYRSAVDLPEGKMNHFKIPLEIKGPSGRKNPHTSD 249 Query: 46 RMELMAAIVALEALKEHC-------EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPV 98 R EL A I A + C +++++TDS+YV +G T W+ W +RGWKT PV Sbjct: 250 RAELRAVIAAC---RFRCWTGEGFNKLVIATDSEYVVEGATCWVQGWIQRGWKTRTGNPV 306 Query: 99 KNVDLWQRL 107 N DLW+ L Sbjct: 307 NNRDLWECL 315 >UniRef50_Q2GRU5 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2GRU5_CHAGB Length = 755 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/125 (36%), Positives = 59/125 (47%), Gaps = 26/125 (20%) Query: 5 VEIFTDGSCL----GNPGPG--------------GYGAILRYRGREKTFSAGYTRTTNNR 46 V I TDG+CL NP G A L RG F A +T+N R Sbjct: 583 VLIRTDGACLENGQANPKAGWAFWHGVNDEGTQLVVSASLEARG---PFGAAAAQTSN-R 638 Query: 47 MELMAAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD 102 EL A I AL E + +TDS+YV +G T+W+ W + GWKT+ + VKN D Sbjct: 639 AELRAVIAALRFRHWPGEGFDTFVAATDSEYVVEGATKWVRTWIRNGWKTSAGRDVKNKD 698 Query: 103 LWQRL 107 LW+ L Sbjct: 699 LWEAL 703 >UniRef50_Q6CHD9 YALI0A09878p n=1 Tax=Yarrowia lipolytica RepID=Q6CHD9_YARLI Length = 276 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 16/151 (10%) Query: 5 VEIFTDGSCLGNPGP---GGYGAILRYRGREKTFS---AGYTRTTNNRMELMAAIVALEA 58 + ++TDG+ N GYG I G E S AG + TN R EL A A + Sbjct: 129 IPVYTDGASRNNQSSNAKAGYG-IFFGNGSEDNVSKPLAG-MQQTNQRAELTAIYEACKI 186 Query: 59 LKEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ---RLDAALG 112 +K+ + + TDSQY + +W NW++ GWK + V N D+ + L +LG Sbjct: 187 IKDRNDRRYYDIRTDSQYSISCLKEWGMNWERNGWKNSKGADVSNQDIIKPARNLLISLG 246 Query: 113 QHQIKWEWVKGHAGHPENERCDELA-RAAAM 142 +++ VKGH+ P N+ D LA R A M Sbjct: 247 -DRVRLTKVKGHSSDPGNDAADALAVRGAEM 276 >UniRef50_A8PCJ1 RNase H family protein n=2 Tax=Brugia malayi RepID=A8PCJ1_BRUMA Length = 255 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 23/169 (13%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRG-REKTFSAGYTRTTNNRMELMA-AIVALEALKEHCE 64 ++ DGS GG G R S ++ TN R E+ A ++ AL+A + + Sbjct: 75 VYCDGSFDWTLRKGGIGIFWSPNDERNAHLSLTGSKLTNIRAEIQAVSLAALQACSLNFD 134 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 +I+ TDSQ+V + I W+ W+ WK AD K ++N+D Q+L +++ E G Sbjct: 135 RIIIKTDSQFVVKVINSWLSRWRSNEWKKADGKQIENMDDIQKLSRYTEMIKMRVEHTYG 194 Query: 124 HAGH---------------PENERC-----DELARAAAMNPTLEDTGYQ 152 H + E +RC D L+R A P + D ++ Sbjct: 195 HQKYDERKELEESWDAMSCDERDRCGNFHSDRLSRLAVDQPMMTDEQFE 243 >UniRef50_A6GJD7 DNA polymerase III, epsilon subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJD7_9DELT Length = 234 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 66/151 (43%), Gaps = 22/151 (14%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 I TDG+C GNPGP G G + S TNN EL A + ALEA+ Sbjct: 95 IHTDGACSGNPGPAGLGVHIVRPDSITEISEFIGDATNNVAELKAILRALEAI------- 147 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADK----KPVKNVDLWQRLDAALGQ-HQIKWEWV 121 TD + R+ IH + GW K KNV L +++ L + I+ V Sbjct: 148 --TDEEKERR-----IHLYTDSGWSLGVLIGGWKAKKNVALIEKIKTKLPELPNIELLKV 200 Query: 122 KGHAGHPENERCDELARAAAMNPTLEDTGYQ 152 KGHAG NE D LA A +ED+ + Sbjct: 201 KGHAGLEGNEEADALATKAVR---IEDSSIK 228 >UniRef50_Q5UPY1 Probable ribonuclease H n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RNH_MIMIV Length = 229 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%) Query: 43 TNNRMELMAAIVALEALKEH-----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKP 97 TN R EL A + A++ + ++ C+V++ TDS Y IT+W + W +P Sbjct: 55 TNQRTELYAILYAIQYIDDNFDLNKCKVMIKTDSTYSVNSITKWAEGHSRNDWCKRTGEP 114 Query: 98 VKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENE-----RCDELARAAA 141 + N + Q + I +EWV+ H G ++E + D LA +AA Sbjct: 115 IANREFIQEIYEYYQNFNIDFEWVEAHTGQTDSESIANAQADFLANSAA 163 >UniRef50_Q4D6K7 Ribonuclease H1, putative n=2 Tax=Trypanosoma cruzi RepID=Q4D6K7_TRYCR Length = 323 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 73/180 (40%), Gaps = 49/180 (27%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT-----------TNNRMELMAAI 53 VE++ DG+C N G G + R A TR TNNR EL A I Sbjct: 143 VEVYVDGACRAN----GKGKLSRGGYGGYY-GANDTRNFSLPIPIDEPQTNNRAELYAVI 197 Query: 54 ----VALEALKEHC-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD 108 ALEA E C + + +DS Y QG ++H W + G+ + V N DLW+ L+ Sbjct: 198 YVLRTALEA--ESCYNLRVFSDSMYTIQGADFYMHKWLQNGFCGTNGSTVLNCDLWKSLN 255 Query: 109 AALGQHQIKW-EW-------------------------VKGHAGHPENERCDELARAAAM 142 QH ++ EW V+GHAG NE D LA A+ Sbjct: 256 TMRLQHATRYGEWLVSQFGLLPVVASTLAKKLALQLVHVRGHAGVYGNEMADHLAVMGAL 315 >UniRef50_D0NEW3 Putative uncharacterized protein n=2 Tax=Phytophthora infestans T30-4 RepID=D0NEW3_PHYIN Length = 281 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 20/145 (13%) Query: 8 FTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT------TNNRMELMAAIVALEALKE 61 F DGS L N A R ++ ++ RT TNNR E MAA+ AL+ ++ Sbjct: 138 FCDGSALRNGQRDCDAAYARVFPHDQ--ASNVVRTLNGPWATNNRAEYMAALAALQWARD 195 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 D + +T WI+ W+ GW T + VKN D+ +L G ++ W V Sbjct: 196 E-------DPSMLINSMTNWIYKWQNNGWTTQNGTEVKNRDILGQLLDEQGNREVIWRHV 248 Query: 122 KGHAGHPE-----NERCDELARAAA 141 + H G+ + N+ D AR AA Sbjct: 249 RAHTGNKDWESYWNDIADTKARQAA 273 >UniRef50_Q5KPB0 Ribonuclease H, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KPB0_CRYNE Length = 321 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 71/154 (46%), Gaps = 12/154 (7%) Query: 7 IFTDGSCLGNPGPGG-YGAILRYRGREKTFSAGYTR------TTNNRMELMAAIVALEAL 59 ++TDGS GN G GA + + R + + TNNR EL+A I A+E Sbjct: 122 VYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRAIERC 181 Query: 60 K-EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH---- 114 + + DSQY +T W+ W ++ + K+ V N DL + L L + Sbjct: 182 PFPDIPLEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRRRGAAG 241 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 ++K+++V H+G NE D LAR P + D Sbjct: 242 RVKFKYVPAHSGVEGNEAADRLARTGGALPFVSD 275 >UniRef50_B8MPL2 Ribonuclease H1, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MPL2_TALSN Length = 346 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 39/152 (25%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY---------------RGREKTF-----SAGYTR-- 41 Q I+TDG+CL N G Y R R T S GYT Sbjct: 154 QFLIYTDGACLDNGGLSPQAGCAFYFRPPAEDTQDGRRHNRRRPGTMEFPPPSQGYTSFH 213 Query: 42 ------------TTNNRMELMAAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNW 85 T+NR EL A I AL E ++++TDS+YV +G T W+ W Sbjct: 214 LEKRGPFGDPSSQTSNRAELRAVIGALRFRVWQGEGFRTLVIATDSEYVVEGATNWVKGW 273 Query: 86 KKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + W+T PVKN DLW+ L + +H K Sbjct: 274 LRNNWRTR-SGPVKNKDLWEALLGEIERHHDK 304 >UniRef50_B6QMQ6 Ribonuclease H1, putative n=2 Tax=Leotiomyceta RepID=B6QMQ6_PENMQ Length = 222 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 19/125 (15%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGRE----KTFSAGYTRTTNNRMELMAAIVALEAL- 59 + I DG+C N AI Y G++ ++ TN EL A AL Sbjct: 58 IIIAVDGACRHNGTSEAQAAIGVYFGKQSLNNRSVRLNIDNPTNQIAELTAGFYALRRAM 117 Query: 60 --------------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 K+ V++ +DS+Y+ +G+TQW WKK G++ A PV N +L+Q Sbjct: 118 LLAKRGLLTEDDEGKQLSMVVIKSDSEYLVKGMTQWTLKWKKNGFRNAKGAPVVNAELFQ 177 Query: 106 RLDAA 110 +L+ A Sbjct: 178 KLEQA 182 >UniRef50_A6RSV0 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6RSV0_BOTFB Length = 344 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 7/79 (8%) Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ----HQIKWE 119 ++++ T+S Y+ G WI+ W + G+KT+ KPV N +L+Q LDA + + H W Sbjct: 243 KILIITNSAYIVDGFADWIYKWNENGFKTSTGKPVVNAELFQELDALISKFNQFHIPVWF 302 Query: 120 WVKGHAGHPENERCDELAR 138 W H N D LAR Sbjct: 303 W---HVKKELNASADALAR 318 >UniRef50_A3US86 Ribonuclease H n=3 Tax=Vibrio RepID=A3US86_VIBSP Length = 146 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 4/63 (6%) Query: 47 MELMAAIVALEALKE-HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 +EL+A I A+ ++ C L + S+Y +G +W+ NWK +GW+ +DKKPV N LWQ Sbjct: 54 LELIALIEAIAYARDGDC---LYSSSEYCVKGFNEWLDNWKAKGWRKSDKKPVANRHLWQ 110 Query: 106 RLD 108 ++D Sbjct: 111 QVD 113 >UniRef50_UPI000174364E ribonuclease H n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174364E Length = 93 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 6/84 (7%) Query: 8 FTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVAL-EALKEHCEVI 66 +TDGS + NPGPGG+ I + + TTN RME +A I AL ++ CE+ Sbjct: 5 YTDGSAVPNPGPGGFAVI---KDMKPHILGKDDDTTNIRMEGLAIIAALKDSAGAPCEIY 61 Query: 67 LSTDSQYVRQGITQWIHNWKKRGW 90 TDS++ IT+W W+ +GW Sbjct: 62 --TDSEFWVNVITKWAAGWQSKGW 83 >UniRef50_Q6FPF4 Similar to uniprot|Q04740 Saccharomyces cerevisiae YMR234w RNH1 ribonuclease H n=1 Tax=Candida glabrata RepID=Q6FPF4_CANGA Length = 403 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 70/168 (41%), Gaps = 35/168 (20%) Query: 2 LKQVEIFTDGSCLGN---PGPGGYGAILRYRGR---EKTFSAGYTRTTNNRMELMAAIVA 55 +++V + DGS LGN GYG + K G TNNR E+MA A Sbjct: 239 VQKVTTYCDGSSLGNGTHASKAGYGVYFPHNPSYNISKPLLIG--PQTNNRAEIMAVSEA 296 Query: 56 LEAL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL- 107 L+ + E + TDS+YV + + ++ ++ +T + N DL + L Sbjct: 297 LDTIWNDLTCHGNKVEYTIKTDSEYVSKLLNDRYSSYTEKEMET-----LPNKDLVKPLI 351 Query: 108 --------------DAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 D +K EWVKGHAG P NE D LAR A Sbjct: 352 EKYVKVKTYYDVNKDKFSNDKGLKIEWVKGHAGEPGNEMADLLARRGA 399 >UniRef50_A5D9X8 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X8_PICGU Length = 243 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 31/163 (19%) Query: 7 IFTDGSC----LGNPGPGGYGAILRYRGREKTFSAGYTRT-------TNNRMELMAAIVA 55 I+ DG+C + + GYG + G +A + + TN R EL A A Sbjct: 75 IYIDGACKRNGMASQRKTGYGV---FYGNGDVRNAAVSSSNADKLSGTNQRSELRALYHA 131 Query: 56 LEALKEHCE-------VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD 108 + + + TDS+YV + W WK GW+T + V N DL +R+ Sbjct: 132 IINIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIV 191 Query: 109 ----------AALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 A +G +K E+V GHAG+ NE D+LA AA Sbjct: 192 FYLKEINERLANIGLPPVKIEYVPGHAGNHGNEMADKLANKAA 234 >UniRef50_C9ZTC3 Ribonuclease H1 n=3 Tax=Trypanosoma brucei RepID=C9ZTC3_TRYBG Length = 301 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 71/178 (39%), Gaps = 38/178 (21%) Query: 5 VEIFTDGSCLGN--------PGPGGYGAILRYRGREKTFS-AGYTRTTNNRMELMAAIVA 55 V ++ DG+C N P G G R F + TN R EL A I Sbjct: 122 VVVYVDGACRNNGSRSRERRPRAGFGGFYGDGDSRNFKFPLPAHEPQTNQRAELSALIHV 181 Query: 56 LE-ALKEH-C-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 L AL H C + + +DS+Y G+ ++H W++ G+KTA V N+DLW + Sbjct: 182 LRVALDSHPCYNLCVYSDSKYTVMGVNSYLHRWERNGFKTAGGGDVANIDLWSQFTKLRN 241 Query: 113 QH--------------------------QIKWEWVKGHAGHPENERCDELARAAAMNP 144 +H ++ + V GHAG NE D LA A +P Sbjct: 242 RHLSRCAERFTMEFRFKASLAAIAARAVALQLKHVPGHAGVYGNEMADRLAVEACESP 299 >UniRef50_A1CQB1 Reverse transcriptase, RNaseH, putative n=1 Tax=Aspergillus clavatus RepID=A1CQB1_ASPCL Length = 208 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT-----RTTNNRMELMAAIVALE 57 K + + DG+CL N ++ Y G F+ G R TN EL A + AL Sbjct: 53 KSIVVAVDGACLYNGRAQARASLGVYWGANNYFNTGIVLDPTDRQTNQVAELQACLEALG 112 Query: 58 ALKE-HCE---------VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L + C V++ +DS+Y+ +GIT+W +W+ + W+ PV N++ ++ + Sbjct: 113 NLDDVSCAHPAGDRLSTVVIKSDSEYMVRGITEWFPSWRNQRWRNYRGMPVTNLEYFRMI 172 Query: 108 D 108 D Sbjct: 173 D 173 >UniRef50_A8V3Z1 Ribonuclease HI (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V3Z1_9AQUI Length = 59 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 35/53 (66%) Query: 89 GWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 WKT+ KK V + +WQ + + +H+I WVKGH+GH ENE CD++A+ A Sbjct: 1 NWKTSSKKEVSHKTMWQEIYELMQKHKIHPIWVKGHSGHKENELCDKIAKEEA 53 >UniRef50_Q6BQV8 DEHA2E01870p n=2 Tax=Debaryomyces hansenii RepID=Q6BQV8_DEBHA Length = 306 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 71/172 (41%), Gaps = 34/172 (19%) Query: 2 LKQVEIFTDGSCLGNPGP----GGYGAILRYRGREKTFSA---------GYTRTTNNRME 48 +K I+ DG+ GN GYG Y +K A + TN R E Sbjct: 127 IKIQSIYVDGASRGNGKIRMPISGYGVF--YSASDKRNGAISLNQIDDVHVNKPTNQRAE 184 Query: 49 LMA---AIVALEALKEHCEVILST------DSQYVRQGITQWIHNWKKRGWKTADKKPVK 99 L A A++ + C ++T DSQY + IT+W +W K WKT+ KPV Sbjct: 185 LFAIKHALIDIANEIVECNDKVTTKYEIYSDSQYAQSCITKWCDDWMKNNWKTSQGKPVS 244 Query: 100 NVDLWQRLDAAL-------GQHQ---IKWEWVKGHAGHPENERCDELARAAA 141 N D+ + L +H +++ V+GH G NE D LA A Sbjct: 245 NKDIISSVIPILNYINQYYNKHHFGDLQFFHVRGHKGDYGNEMADRLANIGA 296 >UniRef50_C8XUL4 Putative ribonuclease HI n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL4_9CAUD Length = 146 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 15/121 (12%) Query: 42 TTNNRMELMAAIVALEAL--------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTA 93 +TNN EL+ AL+ L + + + +DSQY + +T+W W+ +G+ Sbjct: 14 STNNIAELLGVTNALKLLWAFSGKGERRIPKATIWSDSQYTIKSVTEWRAKWEYQGFPDK 73 Query: 94 DKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 + + +K DL++ D +++ +WVKGHAGH NE D+ A AA D+ + + Sbjct: 74 NVELIK--DLFRIYDLVCSICEVELKWVKGHAGHEGNELADDWATAAK-----NDSNFLI 126 Query: 154 E 154 E Sbjct: 127 E 127 >UniRef50_C5M9Q1 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M9Q1_CANTT Length = 284 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 69/168 (41%), Gaps = 34/168 (20%) Query: 7 IFTDGSCLGNPG----PGGYGAILRYRGREKTFSAGYT----------RTTNNRMELMAA 52 ++ DG+C GN GYG Y G + +A + R TN R EL A Sbjct: 115 VYIDGACRGNGNKYNTSAGYGV---YYGHNDSRNAAVSLDFVDQDNNYRPTNQRAELHAL 171 Query: 53 IVAL-----EALKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 L + + C + + TDS +V IT W + W GW V NVDL Q Sbjct: 172 NHVLLNINSDIQNDECYRKTEIRTDSMFVINSITNWCYKWCNNGWNNVKGDTVANVDLIQ 231 Query: 106 ---RLDAALGQH-------QIKWEWVKGHAGHPENERCDELARAAAMN 143 L ++ + I+++ V+GH+G N+ D LA A N Sbjct: 232 ENFNLMNSINEEYEDRGWGDIEFKHVRGHSGDYGNDEADRLANIGADN 279 >UniRef50_P54162 14.7 kDa ribonuclease H-like protein n=82 Tax=Bacillus RepID=RNHL_BACSU Length = 132 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 19/138 (13%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAI--VALEALKEHC 63 EI+ DG+ GNPGP G G +++ G+ ++FS TN E +A I + L A + + Sbjct: 4 EIYVDGASAGNPGPSGIGIFIKHEGKAESFSIPIGVHTNQEAEFLALIEGMKLCATRGYQ 63 Query: 64 EVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 V TDS V + + + N + + V+ RL AA IK W+ Sbjct: 64 SVSFRTDSDIVERATELEMVKNITFQPF----------VEEIIRLKAAFPLFFIK--WIP 111 Query: 123 GHAGHPENERCDELARAA 140 G +N++ D LA+ A Sbjct: 112 GK----QNQKADLLAKEA 125 >UniRef50_D2R7S3 Putative uncharacterized protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7S3_9PLAN Length = 210 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 11/104 (10%) Query: 43 TNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGW---KTADKKPVK 99 T R+EL+A + LEAL + +V L T S V +G+ I W++ W + PVK Sbjct: 50 TGERLELLAIVRGLEALDQPSKVTLVTRSTTVLRGLRYGISQWRENEWEWERFGQMTPVK 109 Query: 100 NVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 + DLWQR+D A+ H + P D+L+ A N Sbjct: 110 HRDLWQRIDQAMQIHVVD--------ARPLEPVIDDLSPPLAAN 145 >UniRef50_Q07762 Ribonuclease H n=4 Tax=Trypanosomatidae RepID=RNH1_CRIFA Length = 494 Score = 53.1 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 37/158 (23%) Query: 7 IFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRT---TNNRMELMAAI------- 53 ++ DG+C N P GYG + FS T TNNR E+ A I Sbjct: 278 VYVDGACSHNGTPKARAGYGGFYGSTSDSRNFSLPVPITEAQTNNRGEMRAVIHCIVQGF 337 Query: 54 ----VALEAL-KEHC---------------EVILSTDSQYVRQGITQWIHNWKKRGWKTA 93 V AL HC +++ TDS+YV G+T++ W G+K A Sbjct: 338 VDAGVPPAALGTSHCVEPDWELSELPQPLRRLVIYTDSRYVIDGLTRYALKWVANGFKLA 397 Query: 94 DKKPVKNVDLWQRL----DAALGQHQIKWEWVKGHAGH 127 K+PV N DLW++L DA ++ + W H Sbjct: 398 SKEPVLNQDLWRQLIRLRDAYNTRYAEQQHWAAATCSH 435 >UniRef50_Q6CHQ1 YALI0A06523p n=1 Tax=Yarrowia lipolytica RepID=Q6CHQ1_YARLI Length = 369 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 10/143 (6%) Query: 6 EIFTDGSCLGN---PGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAI----VALE 57 +IFTDG+C N G+G L +E Y + TN R EL A + + Sbjct: 208 QIFTDGACSRNGQKDAVAGFGLYLGENHKENLSGRVYGSPQTNQRAELTAILHAYCICAS 267 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA--ALGQHQ 115 L + + TDS Y +T+W W++ GW+ +PV N D+ +R+ A + Sbjct: 268 KLSDGRLYEIYTDSSYAIDCLTKWHIAWERNGWRNRGGEPVANQDVIKRILTLKAESTNC 327 Query: 116 IKWEWVKGHAGHPENERCDELAR 138 I + V+ H N++ D LAR Sbjct: 328 IGLKKVEAHGSSEGNKQADRLAR 350 >UniRef50_B6H8I6 Pc16g06030 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H8I6_PENCW Length = 249 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%) Query: 7 IFTDGSCLGNPGPGGYGA-----------ILRYRGREKTFSAGYTRTTNNRMELMAAIVA 55 I+TDG+C+ N P R+ K + T +R ++ A + A Sbjct: 80 IYTDGTCMDNGRPHARAGCSFVYNESTSGFARFPLEYKGPTGQQHPMTIDRAQVRAVVAA 139 Query: 56 LE----ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L A +I++TDS YV GIT+ H W + W T +P++N DLW+ L Sbjct: 140 LRYRDWAADGFSRLIIATDSDYVVDGITRDAHEWTQFNWTTRAGEPIRNRDLWECL 195 >UniRef50_C5DHG7 KLTH0E04202p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DHG7_LACTC Length = 381 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 36/169 (21%) Query: 1 MLKQVEIFTDGSCLGN---PGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAI 53 +++ ++ DGS L N GYG G E TNNR E+ A Sbjct: 218 VVQDCNVYCDGSALSNGTRSSRAGYGVYFEQDGGNNISEPLLEGA---QTNNRAEIQAVS 274 Query: 54 VALEAL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR 106 AL+ + K++ + TDS+YV + + N + G+ + + N DL Sbjct: 275 SALDQIWTNLTANKKNLRYQIKTDSEYVAK-----LLNDRYMGYSVQKLEQLPNSDLIAP 329 Query: 107 L--------------DAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 L + G + EWV+GHAG NE+ DELAR A Sbjct: 330 LVQKFVKVKKFYEINEEVFGSSKFHIEWVRGHAGEAGNEKADELARLGA 378 >UniRef50_C5M9Q2 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M9Q2_CANTT Length = 283 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 34/166 (20%) Query: 7 IFTDGSCLGN----PGPGGYGAILRYRGREKTFSAGYT----------RTTNNRMELMAA 52 ++ DG+C GN GYG + GR + R TN R EL A Sbjct: 114 VYIDGACRGNGNKYNSSAGYGV---FYGRNNPRNVANPLDLVDRHNDYRPTNQRAELYAL 170 Query: 53 IVALEALKE-----HCEVI--LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 L + +C + + TDS +V IT W + W GW A V NVDL Q Sbjct: 171 CQVLVNIVNDINAGNCRLKTEIRTDSMFVINSITTWCYKWCNNGWINAKGDTVANVDLLQ 230 Query: 106 RLDAAL----------GQHQIKWEWVKGHAGHPENERCDELARAAA 141 + + G I++ V+GH+G N+ D LA A Sbjct: 231 KNFNLMKSINKEYEDRGWGDIEFIHVRGHSGDYGNDEADRLANLGA 276 >UniRef50_A3ZXA0 Probable ribonuclease HI n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZXA0_9PLAN Length = 170 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 44 NNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGW---KTADKKPVKN 100 +R+ L++ + LEAL E V L T S+YV +G + W++ G+ + PV++ Sbjct: 47 RDRLALLSVVRGLEALPEPSRVTLLTPSRYVSRGFRYGLSVWRESGFRWERFGRLAPVRD 106 Query: 101 VDLWQRLDAALGQHQI 116 DLWQR+ A+ H++ Sbjct: 107 ADLWQRVSQAMQFHRV 122 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A6T512 Ribonuclease H n=155 Tax=Bacteria RepID=RNH_KLEP7 256 1e-67 UniRef50_A7MI34 Ribonuclease H n=2 Tax=Cronobacter RepID=RNH_ENTS8 253 8e-67 UniRef50_B4EUG3 Ribonuclease H n=13 Tax=Bacteria RepID=RNH_PROMH 242 3e-63 UniRef50_Q7N807 Ribonuclease H n=8 Tax=Gammaproteobacteria RepID... 237 6e-62 UniRef50_Q5E3G5 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_VIBF1 237 9e-62 UniRef50_Q65S82 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_... 233 1e-60 UniRef50_B1KHK0 Ribonuclease H n=21 Tax=Bacteria RepID=RNH_SHEWM 226 1e-58 UniRef50_A3QET0 Ribonuclease H n=32 Tax=Bacteria RepID=RNH_SHELP 223 1e-57 UniRef50_B8DIU7 Ribonuclease H n=24 Tax=cellular organisms RepID... 216 2e-55 UniRef50_A1AT66 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_PELPD 215 3e-55 UniRef50_Q2J0F8 Ribonuclease H n=19 Tax=Proteobacteria RepID=RNH... 215 5e-55 UniRef50_Q31H49 Ribonuclease H n=7 Tax=root RepID=RNH_THICR 214 9e-55 UniRef50_A1KV38 Ribonuclease H n=98 Tax=cellular organisms RepID... 212 3e-54 UniRef50_B0T025 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CAUSK 211 6e-54 UniRef50_C6XRA4 Ribonuclease H n=7 Tax=Bacteria RepID=C6XRA4_HIRBI 211 7e-54 UniRef50_Q2RPU6 Ribonuclease H n=93 Tax=Bacteria RepID=RNH_RHORT 209 3e-53 UniRef50_Q5NYP6 Ribonuclease H n=2 Tax=Proteobacteria RepID=RNH_... 208 5e-53 UniRef50_D1VE35 Ribonuclease H n=1 Tax=Frankia sp. EuI1c RepID=D... 206 2e-52 UniRef50_A0LGJ7 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_... 205 4e-52 UniRef50_A0L9H3 RNase HI n=1 Tax=Magnetococcus sp. MC-1 RepID=A0... 205 5e-52 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 203 1e-51 UniRef50_P29253 Ribonuclease H n=100 Tax=Bacteria RepID=RNH_THET8 200 1e-50 UniRef50_Q2Z0V7 Putative Ribonuclease HI n=1 Tax=Pseudomonas pha... 200 1e-50 UniRef50_C8X6F1 Ribonuclease H n=1 Tax=Nakamurella multipartita ... 199 2e-50 UniRef50_C6WBP3 Ribonuclease H n=9 Tax=Bacteria RepID=C6WBP3_ACTMD 199 3e-50 UniRef50_C9KMB8 Ribonuclease HI (Fragment) n=1 Tax=Mitsuokella m... 199 3e-50 UniRef50_A5CEP5 Ribonuclease H n=33 Tax=cellular organisms RepID... 198 5e-50 UniRef50_Q14IN1 Ribonuclease H n=225 Tax=cellular organisms RepI... 198 5e-50 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 197 8e-50 UniRef50_Q2LWY9 Ribonuclease H n=7 Tax=Bacteria RepID=RNH_SYNAS 197 8e-50 UniRef50_A9WK52 Ribonuclease H n=11 Tax=Bacteria RepID=A9WK52_CHLAA 197 9e-50 UniRef50_A6C006 Ribonuclease H n=1 Tax=Planctomyces maris DSM 87... 196 2e-49 UniRef50_B3EH35 Ribonuclease H n=6 Tax=Bacteria RepID=RNH_CHLL2 196 2e-49 UniRef50_C9LX49 Ribonuclease H n=2 Tax=Selenomonas RepID=C9LX49_... 195 6e-49 UniRef50_Q5FG88 Ribonuclease H n=4 Tax=Rickettsiales RepID=RNH_E... 194 6e-49 UniRef50_B7JVG1 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CYAP8 194 7e-49 UniRef50_Q2RKU0 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_MOOTA 193 1e-48 UniRef50_A4XKQ3 Ribonuclease H n=2 Tax=Bacteria RepID=RNH_CALS8 191 4e-48 UniRef50_Q2S3C1 RNase H n=3 Tax=Bacteria RepID=Q2S3C1_SALRD 191 4e-48 UniRef50_A3DD79 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CLOTH 191 5e-48 UniRef50_B0K9M0 Ribonuclease H n=14 Tax=Bacteria RepID=RNH_THEP3 191 6e-48 UniRef50_Q5PBQ8 Ribonuclease H n=10 Tax=Bacteria RepID=RNH_ANAMM 191 6e-48 UniRef50_C2D756 Ribonuclease H n=1 Tax=Atopobium vaginae DSM 158... 190 9e-48 UniRef50_A2FNB2 RNase H family protein n=1 Tax=Trichomonas vagin... 190 1e-47 UniRef50_D2R4V0 Ribonuclease H n=2 Tax=Planctomycetaceae RepID=D... 189 2e-47 UniRef50_Q5N0R7 Ribonuclease H n=3 Tax=Cyanobacteria RepID=Q5N0R... 188 4e-47 UniRef50_A9W185 Ribonuclease H n=9 Tax=Alphaproteobacteria RepID... 186 2e-46 UniRef50_A9B1F3 Ribonuclease H n=2 Tax=Bacteria RepID=A9B1F3_HERA2 186 2e-46 UniRef50_Q8DM24 Ribonuclease H n=27 Tax=Cyanobacteria RepID=RNH_... 184 7e-46 UniRef50_A5GAH5 Ribonuclease H n=6 Tax=Desulfuromonadales RepID=... 184 9e-46 UniRef50_A7FR34 Ribonuclease H n=11 Tax=Firmicutes RepID=RNH_CLOB1 183 1e-45 UniRef50_Q17XJ7 Ribonuclease H n=15 Tax=Campylobacterales RepID=... 183 2e-45 UniRef50_B7J4E2 Ribonuclease H n=2 Tax=Acidithiobacillus ferroox... 181 4e-45 UniRef50_C5GNS4 RNase H domain-containing protein n=4 Tax=Onygen... 181 5e-45 UniRef50_C4V6H3 Ribonuclease H n=1 Tax=Selenomonas flueggei ATCC... 181 6e-45 UniRef50_UPI0000587365 PREDICTED: similar to Ribonuclease H1 n=1... 181 8e-45 UniRef50_B6BTS2 RNase H n=1 Tax=beta proteobacterium KB13 RepID=... 180 1e-44 UniRef50_D2Q8L6 Rnh Ribonuclease H n=2 Tax=Bifidobacterium denti... 178 4e-44 UniRef50_C1D179 Putative ribonuclease H n=1 Tax=Deinococcus dese... 178 5e-44 UniRef50_A6FRK2 Ribonuclease H n=1 Tax=Roseobacter sp. AzwK-3b R... 178 6e-44 UniRef50_A5US20 Ribonuclease H n=2 Tax=Bacteria RepID=A5US20_ROSS1 178 7e-44 UniRef50_Q9RVX2 Ribonuclease H n=1 Tax=Deinococcus radiodurans R... 178 7e-44 UniRef50_B2S2V0 Ribonuclease H n=4 Tax=Bacteria RepID=RNH_TREPS 178 7e-44 UniRef50_A8ZXF3 Ribonuclease H n=1 Tax=Desulfococcus oleovorans ... 177 8e-44 UniRef50_Q6MIM3 Ribonuclease H n=1 Tax=Bdellovibrio bacteriovoru... 177 9e-44 UniRef50_A7NII6 Ribonuclease H n=3 Tax=Bacteria RepID=A7NII6_ROSCS 177 9e-44 UniRef50_C5EB64 Ribonuclease H n=2 Tax=Bifidobacterium longum Re... 175 3e-43 UniRef50_D1NV93 Ribonuclease H n=1 Tax=Bifidobacterium gallicum ... 175 4e-43 UniRef50_C8VF62 Ribonuclease H, putative (AFU_orthologue; AFUA_1... 175 4e-43 UniRef50_C2FU18 Ribonuclease H n=2 Tax=Sphingobacterium spiritiv... 174 5e-43 UniRef50_A6GW41 Ribonuclease HI n=13 Tax=Bacteria RepID=A6GW41_F... 174 6e-43 UniRef50_Q7V474 Possible ribonuclease HI n=12 Tax=Bacteria RepID... 174 6e-43 UniRef50_A1A0B0 Ribonuclease H n=8 Tax=Bifidobacterium RepID=A1A... 174 6e-43 UniRef50_A2QPK3 Contig An07c0360, complete genome n=16 Tax=Eurot... 174 7e-43 UniRef50_C0VYC6 Prolyl aminopeptidase n=1 Tax=Actinomyces coleoc... 173 1e-42 UniRef50_B6JI04 Ribonuclease HI (RNase HI) n=1 Tax=Oligotropha c... 173 1e-42 UniRef50_Q2GDA1 Ribonuclease H n=2 Tax=Neorickettsia RepID=RNH_N... 173 1e-42 UniRef50_A7SAK2 Predicted protein n=1 Tax=Nematostella vectensis... 173 2e-42 UniRef50_A7IEA7 Ribonuclease H n=1 Tax=Xanthobacter autotrophicu... 172 3e-42 UniRef50_Q92S39 Probable ribonuclease HI protein n=1 Tax=Sinorhi... 171 4e-42 UniRef50_A4Y094 Ribonuclease H n=1 Tax=Pseudomonas mendocina ymp... 171 4e-42 UniRef50_A9WMA2 Ribonuclease HI n=1 Tax=Renibacterium salmoninar... 171 5e-42 UniRef50_Q8D3D3 Ribonuclease H n=1 Tax=Wigglesworthia glossinidi... 171 6e-42 UniRef50_C3Y169 Putative uncharacterized protein n=1 Tax=Branchi... 170 1e-41 UniRef50_A5GWJ8 Ribonuclease H n=3 Tax=Synechococcus RepID=A5GWJ... 170 1e-41 UniRef50_B2AD65 Predicted CDS Pa_4_220 n=1 Tax=Podospora anserin... 170 1e-41 UniRef50_C1BKT9 Ribonuclease H1 n=5 Tax=Euteleostomi RepID=C1BKT... 169 2e-41 UniRef50_A8HXQ9 Ribonuclease H n=1 Tax=Azorhizobium caulinodans ... 169 2e-41 UniRef50_C2CX87 Possible ribonuclease H n=2 Tax=Bifidobacteriace... 169 2e-41 UniRef50_C7NFY8 RNase HI n=1 Tax=Kytococcus sedentarius DSM 2054... 168 4e-41 UniRef50_C0QZB8 Ribonuclease H n=2 Tax=Brachyspira RepID=C0QZB8_... 168 5e-41 UniRef50_D2XAD4 Ribonuclease H n=1 Tax=Marseillevirus RepID=D2XA... 168 5e-41 UniRef50_C3MAD4 Putative ribonuclease HI n=1 Tax=Rhizobium sp. N... 168 5e-41 UniRef50_C9SF93 Ribonuclease H n=2 Tax=Sordariomycetes RepID=C9S... 168 7e-41 UniRef50_Q46HH3 Ribonuclease H n=5 Tax=Cyanobacteria RepID=RNH_P... 166 1e-40 UniRef50_D2R9R7 Ribonuclease HI n=1 Tax=Gardnerella vaginalis 40... 166 2e-40 UniRef50_A4JFN6 Ribonuclease H n=1 Tax=Burkholderia vietnamiensi... 166 3e-40 UniRef50_B6JLP9 Ribonuclease H n=3 Tax=Helicobacter RepID=B6JLP9... 165 3e-40 UniRef50_O60930 Ribonuclease H1 n=26 Tax=Bilateria RepID=RNH1_HUMAN 165 3e-40 UniRef50_B8HCV8 Ribonuclease H n=6 Tax=Actinobacteria (class) Re... 164 6e-40 UniRef50_A8N3A5 Predicted protein n=2 Tax=Eukaryota RepID=A8N3A5... 164 6e-40 UniRef50_B2AS39 Predicted CDS Pa_1_22230 n=2 Tax=Sordariomycetes... 164 1e-39 UniRef50_UPI0001C31642 Ribonuclease H n=1 Tax=Conexibacter woese... 164 1e-39 UniRef50_C7M9U7 RNase HI n=1 Tax=Brachybacterium faecium DSM 481... 163 2e-39 UniRef50_Q7S4S2 Predicted protein n=2 Tax=Sordariales RepID=Q7S4... 163 2e-39 UniRef50_UPI0001757D40 PREDICTED: similar to GA21286-PA n=1 Tax=... 163 2e-39 UniRef50_A8QFV5 RNase H family protein n=1 Tax=Brugia malayi Rep... 163 2e-39 UniRef50_Q66LX4 Ribonuclease H n=4 Tax=Siphoviridae RepID=Q66LX4... 162 3e-39 UniRef50_UPI000180BF60 PREDICTED: similar to predicted protein n... 162 3e-39 UniRef50_A5FZ26 Ribonuclease H n=11 Tax=Bacteria RepID=RNH_ACICJ 162 3e-39 UniRef50_B8DW51 Ribonuclease H n=4 Tax=Bifidobacterium animalis ... 161 5e-39 UniRef50_C1B0N1 Ribonuclease HI n=3 Tax=Nocardiaceae RepID=C1B0N... 161 6e-39 UniRef50_Q1DA37 Ribonuclease H n=1 Tax=Myxococcus xanthus DK 162... 161 7e-39 UniRef50_A6RRU3 Putative uncharacterized protein n=1 Tax=Botryot... 161 8e-39 UniRef50_Q86MG7 Rnase h protein 1.0, isoform c, partially confir... 161 8e-39 UniRef50_D2NR13 Ribonuclease HI n=2 Tax=Rothia mucilaginosa RepI... 161 9e-39 UniRef50_Q9UST8 Ribonuclease H n=1 Tax=Schizosaccharomyces pombe... 161 9e-39 UniRef50_D1YER5 Ribonuclease HI n=4 Tax=Actinomycetales RepID=D1... 161 9e-39 UniRef50_UPI000186D39C asparagine-rich protein, putative n=1 Tax... 160 1e-38 UniRef50_B0CND0 Predicted protein n=1 Tax=Laccaria bicolor S238N... 160 1e-38 UniRef50_D1BU35 Ribonuclease H n=1 Tax=Xylanimonas cellulosilyti... 160 2e-38 UniRef50_Q83HK9 Ribonuclease H n=3 Tax=Actinomycetales RepID=RNH... 160 2e-38 UniRef50_A8PYJ8 Putative uncharacterized protein n=1 Tax=Malasse... 159 2e-38 UniRef50_D0WKT5 Ribonuclease HI n=1 Tax=Actinomyces sp. oral tax... 159 2e-38 UniRef50_C0ZQX0 Ribonuclease HI n=2 Tax=Rhodococcus erythropolis... 159 3e-38 UniRef50_C7MN72 RNase HI n=2 Tax=Bacteria RepID=C7MN72_CRYCD 159 3e-38 UniRef50_B7KMH6 Ribonuclease H n=1 Tax=Cyanothece sp. PCC 7424 R... 159 3e-38 UniRef50_A2SIU3 RNase HI n=2 Tax=Proteobacteria RepID=A2SIU3_METPP 159 3e-38 UniRef50_UPI000050F716 ribonuclease H n=1 Tax=Brevibacterium lin... 158 4e-38 UniRef50_Q0TWR7 Putative uncharacterized protein n=1 Tax=Phaeosp... 158 5e-38 UniRef50_A0JT09 Ribonuclease H n=5 Tax=Actinomycetales RepID=A0J... 158 6e-38 UniRef50_B8CNS8 Ribonuclease H n=1 Tax=Shewanella piezotolerans ... 157 8e-38 UniRef50_Q5KPB0 Ribonuclease H, putative n=2 Tax=Filobasidiella ... 157 9e-38 UniRef50_Q58E11 MGC115038 protein n=2 Tax=Xenopus RepID=Q58E11_X... 157 1e-37 UniRef50_D0JBH5 Ribonuclease HI n=3 Tax=Flavobacteria RepID=D0JB... 157 1e-37 UniRef50_C1BPL6 Ribonuclease H1 n=1 Tax=Caligus rogercresseyi Re... 156 2e-37 UniRef50_O44114 Ribonuclease H1 n=3 Tax=Drosophila melanogaster ... 155 4e-37 UniRef50_A3W3Z9 Bifunctional protein: Ribonuclease HI and DNA po... 154 5e-37 UniRef50_B2GFP5 Ribonuclease HI n=1 Tax=Kocuria rhizophila DC220... 154 6e-37 UniRef50_Q9X7R6 Ribonuclease HI n=8 Tax=Actinomycetales RepID=RN... 154 6e-37 UniRef50_Q4P0S4 Putative uncharacterized protein n=1 Tax=Ustilag... 154 6e-37 UniRef50_B4UMK8 Ribonuclease H n=4 Tax=Anaeromyxobacter RepID=RN... 154 7e-37 UniRef50_UPI0001925315 PREDICTED: similar to predicted protein n... 154 1e-36 UniRef50_B3S3Z5 Putative uncharacterized protein n=1 Tax=Trichop... 153 2e-36 UniRef50_UPI000185C12F ribonuclease H n=1 Tax=Corynebacterium am... 152 4e-36 UniRef50_A6QCI9 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_SULNB 151 6e-36 UniRef50_A4QYI2 Putative uncharacterized protein n=1 Tax=Magnapo... 150 1e-35 UniRef50_Q6C0A0 YALI0F26543p n=1 Tax=Yarrowia lipolytica RepID=Q... 150 1e-35 UniRef50_A1SDS5 Ribonuclease H n=1 Tax=Nocardioides sp. JS614 Re... 150 1e-35 UniRef50_A8EUW9 Ribonuclease HI n=1 Tax=Arcobacter butzleri RM40... 150 2e-35 UniRef50_B6VBD2 Putative uncharacterized protein (Fragment) n=1 ... 150 2e-35 UniRef50_B4SE10 Ribonuclease H n=1 Tax=Pelodictyon phaeoclathrat... 149 3e-35 UniRef50_Q7Q3X5 AGAP008088-PA n=1 Tax=Anopheles gambiae RepID=Q7... 149 4e-35 UniRef50_A5L3F5 Bifunctional protein: Ribonuclease HI and DNA po... 148 4e-35 UniRef50_C4QWX0 Ribonuclease H1 n=1 Tax=Pichia pastoris GS115 Re... 146 2e-34 UniRef50_B4VV33 RNase H, putative n=1 Tax=Microcoleus chthonopla... 146 2e-34 UniRef50_C0QFZ9 RnhA1 n=1 Tax=Desulfobacterium autotrophicum HRM... 145 3e-34 UniRef50_Q6C6C0 YALI0E10725p n=1 Tax=Yarrowia lipolytica RepID=Q... 144 1e-33 UniRef50_A5UB13 Ribonuclease H n=1 Tax=Haemophilus influenzae Pi... 144 1e-33 UniRef50_Q2S3J4 Ribonuclease H n=1 Tax=Salinibacter ruber DSM 13... 143 1e-33 UniRef50_UPI000051AB6A PREDICTED: similar to Ribonuclease H1 (RN... 143 2e-33 UniRef50_D1WSF8 Ribonuclease H n=10 Tax=Streptomyces RepID=D1WSF... 143 3e-33 UniRef50_C4QPU4 Phosphoglucomutase, putative n=5 Tax=Schistosoma... 142 3e-33 UniRef50_C1BQR6 Ribonuclease H1 n=2 Tax=Caligus rogercresseyi Re... 141 5e-33 UniRef50_C4WXR8 ACYPI28043 protein n=1 Tax=Acyrthosiphon pisum R... 141 6e-33 UniRef50_Q484S6 Ribonuclease HI n=3 Tax=Alteromonadales RepID=Q4... 141 9e-33 UniRef50_Q6CHD9 YALI0A09878p n=1 Tax=Yarrowia lipolytica RepID=Q... 141 9e-33 UniRef50_C1A5K0 Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca ... 141 1e-32 UniRef50_C4YSL5 Putative uncharacterized protein n=1 Tax=Candida... 140 1e-32 UniRef50_Q6CGX9 YALI0A15059p n=1 Tax=Yarrowia lipolytica RepID=Q... 140 2e-32 UniRef50_A5E5Q8 Putative uncharacterized protein n=1 Tax=Loddero... 139 2e-32 UniRef50_Q04CJ1 RNase HI n=5 Tax=Lactobacillus RepID=Q04CJ1_LACDB 139 2e-32 UniRef50_C0QLK2 RnhA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 139 2e-32 UniRef50_A5E5Q5 Putative uncharacterized protein n=1 Tax=Loddero... 138 6e-32 UniRef50_UPI00016B24DF ribonuclease HI n=1 Tax=candidate divisio... 138 6e-32 UniRef50_C7GZL7 Ribonuclease HI n=1 Tax=Eubacterium saphenum ATC... 138 7e-32 UniRef50_Q0URN5 Putative uncharacterized protein n=2 Tax=Leotiom... 138 8e-32 UniRef50_Q6CHQ1 YALI0A06523p n=1 Tax=Yarrowia lipolytica RepID=Q... 138 8e-32 UniRef50_D2EJR4 RNase HI n=1 Tax=Pediococcus acidilactici 7_4 Re... 137 1e-31 UniRef50_Q6CH42 YALI0A12705p n=1 Tax=Yarrowia lipolytica RepID=Q... 137 1e-31 UniRef50_Q6BQV8 DEHA2E01870p n=2 Tax=Debaryomyces hansenii RepID... 137 1e-31 UniRef50_D0LP47 Ribonuclease H n=1 Tax=Haliangium ochraceum DSM ... 136 2e-31 UniRef50_A8B979 Ribonuclease H n=2 Tax=Giardia intestinalis RepI... 136 2e-31 UniRef50_B0WK63 Putative uncharacterized protein n=1 Tax=Culex q... 136 2e-31 UniRef50_Q12R78 Ribonuclease H n=22 Tax=Proteobacteria RepID=Q12... 135 4e-31 UniRef50_B9WJ33 Ribonuclease H, putative n=6 Tax=Saccharomycetal... 135 4e-31 UniRef50_Q6ML79 RnhA protein n=1 Tax=Bdellovibrio bacteriovorus ... 134 8e-31 UniRef50_Q7V385 Possible ribonuclease HI n=7 Tax=Prochlorococcus... 134 8e-31 UniRef50_A6LWB3 Ribonuclease H n=2 Tax=Clostridium RepID=A6LWB3_... 134 1e-30 UniRef50_A5D9X7 Putative uncharacterized protein n=2 Tax=Pichia ... 133 1e-30 UniRef50_B9WIZ5 Ribonuclease H, putative n=4 Tax=Candida RepID=B... 133 1e-30 UniRef50_C4XZS8 Putative uncharacterized protein n=1 Tax=Clavisp... 133 2e-30 UniRef50_C5M9Q1 Putative uncharacterized protein n=1 Tax=Candida... 133 2e-30 UniRef50_Q5E052 Ribonuclease H n=20 Tax=Vibrionaceae RepID=Q5E05... 133 3e-30 UniRef50_Q03HC1 RNase HI n=3 Tax=Lactobacillaceae RepID=Q03HC1_P... 132 3e-30 UniRef50_B8FI74 Ribonuclease H n=1 Tax=Desulfatibacillum alkeniv... 132 3e-30 UniRef50_C6VIU9 Ribonuclease H (Putative) n=4 Tax=Lactobacillus ... 132 3e-30 UniRef50_A9EZR8 Ribonuclease H n=1 Tax=Sorangium cellulosum 'So ... 132 4e-30 UniRef50_Q1QJH4 Ribonuclease H n=1 Tax=Nitrobacter hamburgensis ... 131 1e-29 UniRef50_Q034K7 RNase H with double-stranded RNA/RNA-DNA hybrid ... 129 3e-29 UniRef50_C9ZTC3 Ribonuclease H1 n=3 Tax=Trypanosoma brucei RepID... 129 3e-29 UniRef50_A1D7S4 RNase H domain protein n=1 Tax=Neosartorya fisch... 129 4e-29 UniRef50_C5M9Q2 Putative uncharacterized protein n=1 Tax=Candida... 129 4e-29 UniRef50_A5D9X8 Putative uncharacterized protein n=2 Tax=Pichia ... 128 5e-29 UniRef50_Q07762 Ribonuclease H n=4 Tax=Trypanosomatidae RepID=RN... 128 6e-29 UniRef50_C7YSN3 Putative uncharacterized protein n=1 Tax=Nectria... 127 1e-28 UniRef50_B6BHK3 Ribonuclease H n=2 Tax=Proteobacteria RepID=B6BH... 127 1e-28 UniRef50_Q2JHH6 Ribonuclease H n=2 Tax=Synechococcus RepID=Q2JHH... 126 2e-28 UniRef50_B6B8N1 RNA-directed DNA polymerase n=1 Tax=Rhodobactera... 126 2e-28 UniRef50_Q54222 Putative RNaseH n=1 Tax=Streptomyces galbus RepI... 125 6e-28 UniRef50_A8ZTA6 Ribonuclease H n=1 Tax=Desulfococcus oleovorans ... 124 6e-28 UniRef50_Q8SD07 PHIKZ155 n=2 Tax=phiKZ-like viruses RepID=Q8SD07... 124 1e-27 UniRef50_A6GJD7 DNA polymerase III, epsilon subunit n=1 Tax=Ples... 124 1e-27 UniRef50_Q6FPF4 Similar to uniprot|Q04740 Saccharomyces cerevisi... 123 2e-27 UniRef50_A2R215 Contig An13c0090, complete genome n=1 Tax=Asperg... 123 2e-27 UniRef50_A8XYS2 C. briggsae CBR-RNH-1.3 protein n=2 Tax=Caenorha... 121 7e-27 UniRef50_Q046W4 RNase HI n=5 Tax=Lactobacillus RepID=Q046W4_LACGA 121 8e-27 UniRef50_Q5MCR4 Ribonuclease HI n=1 Tax=Leishmania major RepID=Q... 121 9e-27 UniRef50_B9JEK9 Putative uncharacterized protein n=1 Tax=Agrobac... 121 1e-26 UniRef50_A5DAG3 Putative uncharacterized protein n=1 Tax=Pichia ... 120 1e-26 UniRef50_D0NEW7 Ribonuclease, putative n=1 Tax=Phytophthora infe... 120 1e-26 UniRef50_Q5UPY1 Probable ribonuclease H n=1 Tax=Acanthamoeba pol... 120 1e-26 UniRef50_C2KDF2 Ribonuclease n=16 Tax=Lactobacillus RepID=C2KDF2... 119 2e-26 UniRef50_D0NEW3 Putative uncharacterized protein n=2 Tax=Phytoph... 119 3e-26 UniRef50_Q5BXL7 SJCHGC09332 protein (Fragment) n=1 Tax=Schistoso... 117 8e-26 UniRef50_Q9XVE6 Protein C04F12.9, confirmed by transcript eviden... 117 1e-25 UniRef50_A9CET6 Ribonuclease H n=1 Tax=Agrobacterium tumefaciens... 117 1e-25 UniRef50_C5DHG7 KLTH0E04202p n=1 Tax=Lachancea thermotolerans CB... 117 1e-25 UniRef50_A7EQD5 Putative uncharacterized protein n=2 Tax=Sclerot... 117 1e-25 UniRef50_C5R9S8 Ribonuclease H n=1 Tax=Weissella paramesenteroid... 117 2e-25 UniRef50_B8MPL2 Ribonuclease H1, putative n=1 Tax=Talaromyces st... 116 3e-25 UniRef50_A8NLY2 Putative uncharacterized protein n=1 Tax=Coprino... 116 3e-25 UniRef50_Q03P82 RNase HI n=15 Tax=Lactobacillus RepID=Q03P82_LACBA 116 3e-25 UniRef50_Q2HHV6 Putative uncharacterized protein n=2 Tax=Sordari... 115 4e-25 UniRef50_C7YX62 Putative uncharacterized protein n=1 Tax=Nectria... 114 8e-25 UniRef50_Q4D6K7 Ribonuclease H1, putative n=2 Tax=Trypanosoma cr... 114 1e-24 UniRef50_B5ZRJ7 Ribonuclease H n=6 Tax=Rhizobium RepID=B5ZRJ7_RHILW 114 1e-24 UniRef50_A7TG71 Putative uncharacterized protein n=3 Tax=Fungi/M... 114 1e-24 UniRef50_A1CQB1 Reverse transcriptase, RNaseH, putative n=1 Tax=... 114 1e-24 UniRef50_A5D9X9 Putative uncharacterized protein n=2 Tax=Pichia ... 113 2e-24 UniRef50_C9DGJ5 Putative RNaseH ribonuclease n=1 Tax=Deftia phag... 112 2e-24 UniRef50_Q6CVD1 KLLA0B12958p n=1 Tax=Kluyveromyces lactis RepID=... 111 5e-24 UniRef50_Q04740 Ribonuclease H n=6 Tax=Saccharomycetaceae RepID=... 111 5e-24 UniRef50_A8PCJ1 RNase H family protein n=2 Tax=Brugia malayi Rep... 111 7e-24 UniRef50_C8PB59 Ribonuclease HI n=1 Tax=Lactobacillus iners DSM ... 111 9e-24 UniRef50_UPI0001908521 putative ribonuclease HI n=3 Tax=Rhizobiu... 111 1e-23 UniRef50_A8X0Y9 Putative uncharacterized protein n=1 Tax=Caenorh... 110 1e-23 UniRef50_A2QI95 Function: the ribonuclease H n=1 Tax=Aspergillus... 109 3e-23 UniRef50_Q2GRU5 Putative uncharacterized protein n=1 Tax=Chaetom... 109 3e-23 Sequences not found previously or not previously below threshold: UniRef50_A1D376 Reverse transcriptase, RNaseH, putative n=3 Tax=... 110 2e-23 >UniRef50_A6T512 Ribonuclease H n=155 Tax=Bacteria RepID=RNH_KLEP7 Length = 155 Score = 256 bits (655), Expect = 1e-67, Method: Composition-based stats. Identities = 140/154 (90%), Positives = 146/154 (94%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 MLKQVEIFTDGSCLGNPGPGGYGAI+RYR EKTFSAGY TTNNRMELMAAIVALEALK Sbjct: 1 MLKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEALK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EHCEV+LSTDSQYVRQGITQWIHNWKKRGWKTA+KKPVKNVDLWQRLDAALGQH+IKWEW Sbjct: 61 EHCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKWEW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 VKGHAGHPENERCDELARAAA +PTL+D GY E Sbjct: 121 VKGHAGHPENERCDELARAAASHPTLDDVGYLPE 154 >UniRef50_A7MI34 Ribonuclease H n=2 Tax=Cronobacter RepID=RNH_ENTS8 Length = 158 Score = 253 bits (648), Expect = 8e-67, Method: Composition-based stats. Identities = 138/155 (89%), Positives = 144/155 (92%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYGAILRY+ E+TFSAGY TTNNRMELMAAIV+LEAL+ Sbjct: 1 MRKQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVSLEALR 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EHC V LSTDSQYVRQGITQWIHNWKKRGWKTA+KKPVKNVDLWQRLDAAL QH+IKWEW Sbjct: 61 EHCIVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHEIKWEW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 VKGHAGHPENERCDELARAAAM PTLEDTGYQ E Sbjct: 121 VKGHAGHPENERCDELARAAAMAPTLEDTGYQPEA 155 >UniRef50_B4EUG3 Ribonuclease H n=13 Tax=Bacteria RepID=RNH_PROMH Length = 159 Score = 242 bits (617), Expect = 3e-63, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 131/151 (86%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYGAILRY+ EKT S G+ TTNNRMEL+AAIVALEALK Sbjct: 1 MHKQVEIFTDGSCLGNPGPGGYGAILRYQQHEKTLSEGFFMTTNNRMELLAAIVALEALK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C++ L+TDSQYVRQGIT+WIH+WKKR W+ ADK PV NVDLW+RLD A+ +H+I+W W Sbjct: 61 FPCKITLTTDSQYVRQGITKWIHSWKKRQWRKADKSPVLNVDLWKRLDKAIERHEIEWHW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENERCDELA+AAA +PT EDTGY Sbjct: 121 VKGHAGHDENERCDELAKAAAQSPTKEDTGY 151 >UniRef50_Q7N807 Ribonuclease H n=8 Tax=Gammaproteobacteria RepID=RNH_PHOLL Length = 156 Score = 237 bits (606), Expect = 6e-62, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYG +LRY+ EKT S G+ TTNNRMELMAAI+ LE L Sbjct: 1 MGKQVEIFTDGSCLGNPGPGGYGVLLRYQQHEKTLSEGFYHTTNNRMELMAAIIGLETLT 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+++L+TDSQYVRQGITQWIHNWKKRGW+ ADK PV NVDLWQRLD A+ +H I W+W Sbjct: 61 RPCKIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISRHNIDWQW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENERCDELARAAA +PT DTGY Sbjct: 121 VKGHAGHDENERCDELARAAANSPTETDTGY 151 >UniRef50_Q5E3G5 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_VIBF1 Length = 157 Score = 237 bits (605), Expect = 9e-62, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 ++KQVEIFTDGSCLGNPGPGGYG ++RY+G EKTFS G+ +TTNNRME++AA+VAL LK Sbjct: 5 IMKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSEGFNKTTNNRMEMLAAVVALRKLK 64 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C VIL+TDSQYVRQGITQWIH WKKR WK ADKKPV N DLW++LDA +H+I W W Sbjct: 65 EPCSVILTTDSQYVRQGITQWIHGWKKRDWKKADKKPVVNADLWKQLDAESERHKIDWRW 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENE CDELAR AA NPT +DTGY Sbjct: 125 VKGHAGHRENEMCDELARTAAENPTQDDTGY 155 >UniRef50_Q65S82 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_MANSM Length = 158 Score = 233 bits (595), Expect = 1e-60, Method: Composition-based stats. Identities = 100/154 (64%), Positives = 115/154 (74%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQ+EIFTDGSCLGNPG GG G +LRY+ EKT S GY +TTNNRMEL A I AL LK Sbjct: 5 MRKQIEIFTDGSCLGNPGAGGIGVVLRYKQHEKTLSQGYFKTTNNRMELRAVIEALNLLK 64 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C V L +DSQY++ GITQWI NWKK+ WK ++ KPVKN DLW LD A+ H I W W Sbjct: 65 EPCAVTLHSDSQYMKNGITQWIFNWKKKNWKASNGKPVKNQDLWMALDNAVQAHTIDWRW 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 VKGH+GH ENE CD+LA+ A NPTLED GYQ + Sbjct: 125 VKGHSGHRENELCDQLAKQGAENPTLEDIGYQPD 158 >UniRef50_B1KHK0 Ribonuclease H n=21 Tax=Bacteria RepID=RNH_SHEWM Length = 161 Score = 226 bits (578), Expect = 1e-58, Method: Composition-based stats. Identities = 105/156 (67%), Positives = 124/156 (79%), Gaps = 1/156 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 +LKQ+ IFTDGSCLGNPGPGGYG +++Y+ K S G+ TTNNRMEL+A I+ALEALK Sbjct: 3 VLKQLSIFTDGSCLGNPGPGGYGVVMKYKAHTKELSDGFALTTNNRMELLAPIIALEALK 62 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C++IL++DSQY+RQGITQWIH WKK+ W T+ K+PVKNVDLW+RLDAA H+I W W Sbjct: 63 VPCKIILTSDSQYMRQGITQWIHGWKKKNWITSTKQPVKNVDLWKRLDAATQSHEIDWHW 122 Query: 121 VKGHAGHPENERCDELARAAA-MNPTLEDTGYQVEV 155 VKGHAGH ENERCD LAR AA PT ED GYQ V Sbjct: 123 VKGHAGHVENERCDTLARVAAEAKPTQEDLGYQPSV 158 >UniRef50_A3QET0 Ribonuclease H n=32 Tax=Bacteria RepID=RNH_SHELP Length = 158 Score = 223 bits (569), Expect = 1e-57, Method: Composition-based stats. Identities = 108/154 (70%), Positives = 125/154 (81%), Gaps = 1/154 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 LKQ+ IFTDGSCLGNPGPGGYG +++Y+ K S G+ TTNNRMEL+A I+ALEALKE Sbjct: 4 LKQLLIFTDGSCLGNPGPGGYGVVMKYKAHVKELSGGFALTTNNRMELLAPIMALEALKE 63 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C++IL++DSQY+RQGITQWIH WKKRGW TA K+PVKNVDLWQRLDAA H+I W WV Sbjct: 64 PCQIILTSDSQYMRQGITQWIHGWKKRGWLTAAKEPVKNVDLWQRLDAATSTHKIDWRWV 123 Query: 122 KGHAGHPENERCDELARAAA-MNPTLEDTGYQVE 154 KGHAGH ENERCD LAR AA P+ DTGYQ + Sbjct: 124 KGHAGHIENERCDTLAREAAEAGPSEVDTGYQAK 157 >UniRef50_B8DIU7 Ribonuclease H n=24 Tax=cellular organisms RepID=RNH_DESVM Length = 156 Score = 216 bits (551), Expect = 2e-55, Method: Composition-based stats. Identities = 89/153 (58%), Positives = 111/153 (72%), Gaps = 2/153 (1%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K V+ FTDGSCLGNPGPGG+ A+LR G E+ S G+ TTNNRME++A I AL LKE Sbjct: 3 MKNVQAFTDGSCLGNPGPGGWAAVLRCNGSERELSGGFALTTNNRMEILAVIEALALLKE 62 Query: 62 HCEVILSTDSQYVRQGIT-QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C V L TDSQYVR + +W+ W++ GWKT+DKKPVKN DLW+RL L HQ+++ W Sbjct: 63 PCGVDLYTDSQYVRNAVEKKWLAGWRRNGWKTSDKKPVKNRDLWERLQPLLDLHQVRFHW 122 Query: 121 VKGHAGHPENERCDELAR-AAAMNPTLEDTGYQ 152 V+GH+GHPENERCD LAR A+ DTGY+ Sbjct: 123 VRGHSGHPENERCDVLARTQASSRGLPPDTGYR 155 >UniRef50_A1AT66 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_PELPD Length = 163 Score = 215 bits (549), Expect = 3e-55, Method: Composition-based stats. Identities = 76/140 (54%), Positives = 95/140 (67%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+ DG+C GNPGPGGYGAILRY G EK TTNNRMEL AA+ AL L C Sbjct: 20 VEIYCDGACSGNPGPGGYGAILRYNGHEKEIRGSEAHTTNNRMELTAAMEALRLLTRPCR 79 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 + + TDSQY+ +G+T+WI W++RGW+ + K+PV N DLW+ L H + W+W++GH Sbjct: 80 ITIVTDSQYLVKGMTEWIQGWQRRGWQNSKKEPVLNRDLWEELLKLSAHHDVSWQWIRGH 139 Query: 125 AGHPENERCDELARAAAMNP 144 AGH ENERCD LAR A Sbjct: 140 AGHAENERCDSLARQAITEM 159 >UniRef50_Q2J0F8 Ribonuclease H n=19 Tax=Proteobacteria RepID=RNH_RHOP2 Length = 161 Score = 215 bits (547), Expect = 5e-55, Method: Composition-based stats. Identities = 95/138 (68%), Positives = 106/138 (76%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + V I TDG+C GNPGPGG+GAIL++ EK G TTNNRMEL+AAI ALEAL Sbjct: 13 RPVVIHTDGACSGNPGPGGWGAILKFGDTEKELKGGEAHTTNNRMELLAAISALEALTRP 72 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C V L TDSQYV+ GI WIHNWK+ GWKTADKKPVKNVDLWQRLDAAL HQ++W WVK Sbjct: 73 CTVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHQVRWHWVK 132 Query: 123 GHAGHPENERCDELARAA 140 GHAGH ENER D+LAR Sbjct: 133 GHAGHDENERADQLARDG 150 >UniRef50_Q31H49 Ribonuclease H n=7 Tax=root RepID=RNH_THICR Length = 145 Score = 214 bits (545), Expect = 9e-55, Method: Composition-based stats. Identities = 90/139 (64%), Positives = 104/139 (74%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +++VE+FTDG C GNPGPGG+GA+LR+ G EK TTNNRMEL AAI L+ALK Sbjct: 1 MQEVELFTDGGCRGNPGPGGWGALLRFGGVEKELKGAELDTTNNRMELTAAIEGLKALKR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V L+TDSQYV+ GITQW+ NWKK WKTA KKPVKN DLWQ LD AL H + W WV Sbjct: 61 PCKVTLTTDSQYVKNGITQWMTNWKKNNWKTAAKKPVKNKDLWQALDEALQPHDVTWAWV 120 Query: 122 KGHAGHPENERCDELARAA 140 KGH+GH ENER DELA A Sbjct: 121 KGHSGHDENERVDELANQA 139 >UniRef50_A1KV38 Ribonuclease H n=98 Tax=cellular organisms RepID=RNH_NEIMF Length = 145 Score = 212 bits (541), Expect = 3e-54, Method: Composition-based stats. Identities = 82/143 (57%), Positives = 100/143 (69%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M V ++TDG+C GNPG GG+G ++RY EK G +TTNNRMEL A I L++LK Sbjct: 1 MDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C VI+ TDSQYV+ G+ WIH WK+ GWKTA K+PVKN DLW+ LD +GQHQ+ W W Sbjct: 61 RRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWTW 120 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGHAGH ENER D+LA A Sbjct: 121 VKGHAGHAENERADDLANRGAAQ 143 >UniRef50_B0T025 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CAUSK Length = 154 Score = 211 bits (538), Expect = 6e-54, Method: Composition-based stats. Identities = 94/150 (62%), Positives = 111/150 (74%), Gaps = 1/150 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M ++ I+TDG+C GNPGPGG+GA+L Y ++K G TTNNRMELMAAI ALEAL Sbjct: 1 MTPKLVIYTDGACRGNPGPGGWGALLMYGDKKKEIMGGDLATTNNRMELMAAIQALEALN 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + L TDSQYV +G+TQWIH WK +GWKTADK PVKNVDLWQRLDAA +H++ W W Sbjct: 61 KPTKAELHTDSQYVMKGVTQWIHGWKAKGWKTADKSPVKNVDLWQRLDAARARHEVDWRW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTG 150 VKGHAGH NER DELAR M TL + G Sbjct: 121 VKGHAGHVHNERADELARLG-MLKTLGERG 149 >UniRef50_C6XRA4 Ribonuclease H n=7 Tax=Bacteria RepID=C6XRA4_HIRBI Length = 321 Score = 211 bits (537), Expect = 7e-54, Method: Composition-based stats. Identities = 80/143 (55%), Positives = 99/143 (69%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M +EI+TDG+C GNPGPGG+GA++ G+E G TTNNRMELM AI AL ++ Sbjct: 1 MTDMIEIWTDGACSGNPGPGGWGALIVNDGQEIELYGGEANTTNNRMELMGAIEALNSIN 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ L TDS YV+ G+TQWIH WK+ GWKTA K+PVKN DLWQ LD A +HQI+W+W Sbjct: 61 TSSKITLHTDSTYVKNGLTQWIHGWKRNGWKTASKQPVKNKDLWQALDEACKRHQIEWKW 120 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGH+G NER D LA A Sbjct: 121 VKGHSGDEGNERADSLAVKGARE 143 Score = 206 bits (526), Expect = 1e-52, Method: Composition-based stats. Identities = 88/142 (61%), Positives = 102/142 (71%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 QV+I+TDG+C GNPGPGG+GA+L+ EK G TTNNRMELM AI AL +LK Sbjct: 177 QVQIWTDGACSGNPGPGGWGALLKMGEHEKELYGGEKDTTNNRMELMGAIEALTSLKGPS 236 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 VILSTDS YV+ G+T+WIH WKK GWKTA KKPVKN DLWQ LD A +HQI+W WVKG Sbjct: 237 NVILSTDSTYVKDGLTKWIHGWKKNGWKTAAKKPVKNQDLWQALDEACSRHQIEWRWVKG 296 Query: 124 HAGHPENERCDELARAAAMNPT 145 HAG NER D LA +M + Sbjct: 297 HAGDEGNERADGLAVKGSMEAS 318 >UniRef50_Q2RPU6 Ribonuclease H n=93 Tax=Bacteria RepID=RNH_RHORT Length = 166 Score = 209 bits (532), Expect = 3e-53, Method: Composition-based stats. Identities = 89/137 (64%), Positives = 103/137 (75%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V++FTDG+C GNPGPGG+G ILR+ EK G T TTNNRMELMA I LEAL+ Sbjct: 13 RVDMFTDGACSGNPGPGGWGTILRWGDTEKELWGGETPTTNNRMELMAVIRGLEALRRPV 72 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDS+YV GIT WIH WK+ GWKTA KKPVKN DLW+RLDAALG H I W+WV+G Sbjct: 73 TVTIHTDSRYVHDGITGWIHGWKRNGWKTAAKKPVKNEDLWRRLDAALGTHDISWQWVRG 132 Query: 124 HAGHPENERCDELARAA 140 H+GH ENER DELAR Sbjct: 133 HSGHVENERADELARRG 149 >UniRef50_Q5NYP6 Ribonuclease H n=2 Tax=Proteobacteria RepID=RNH_AZOSE Length = 153 Score = 208 bits (529), Expect = 5e-53, Method: Composition-based stats. Identities = 88/142 (61%), Positives = 102/142 (71%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M Q+EIFTDG+C GNPGPGG+GAILR EK G TTNNRMEL+A I ALE LK Sbjct: 1 MTDQIEIFTDGACSGNPGPGGWGAILRSGAHEKEIWGGEPHTTNNRMELLAVIRALELLK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + TDSQYV++GI++WIH WK RGWKTA K PVKN DLW+ LD A +HQ++W W Sbjct: 61 RPVVARVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNEDLWRALDEAASRHQVQWVW 120 Query: 121 VKGHAGHPENERCDELARAAAM 142 V+GHAGH ENER DELAR Sbjct: 121 VRGHAGHVENERADELARRGVD 142 >UniRef50_D1VE35 Ribonuclease H n=1 Tax=Frankia sp. EuI1c RepID=D1VE35_9ACTO Length = 192 Score = 206 bits (525), Expect = 2e-52, Method: Composition-based stats. Identities = 84/137 (61%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHC 63 VEI+TDG+C GNPGPGG+GA+LRY E+ G TTNNRMELMAAI+ALEAL Sbjct: 47 VEIYTDGACKGNPGPGGWGAVLRYGTHERAICGGEAGDTTNNRMELMAAIMALEALTRPS 106 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDSQY+R GI +W+ WK+ GWKT +KKPVKNVDLWQRLDAA H ++W WV+G Sbjct: 107 VVRIHTDSQYLRSGINEWLARWKRNGWKTGEKKPVKNVDLWQRLDAATRVHDVEWLWVRG 166 Query: 124 HAGHPENERCDELARAA 140 HAG P NE D+LA Sbjct: 167 HAGDPGNELADQLANRG 183 >UniRef50_A0LGJ7 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_SYNFM Length = 164 Score = 205 bits (522), Expect = 4e-52, Method: Composition-based stats. Identities = 87/143 (60%), Positives = 104/143 (72%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 + K VEIF DG+C GNPGPGG+GA+LRY G+EK S TTNN+MEL A I AL ALK Sbjct: 13 IRKHVEIFADGACRGNPGPGGWGAVLRYHGKEKELSGYAEYTTNNQMELAAVIQALRALK 72 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C V ++TDS+Y+R GI+ WIH WK+ GWKT K V+N +LW LD A H+I W+W Sbjct: 73 EPCRVTITTDSRYLRDGISLWIHKWKQNGWKTRVKTDVRNKELWIALDEACLPHEIDWQW 132 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGH+GHPENERCD LARAA Sbjct: 133 VKGHSGHPENERCDALARAAIDR 155 >UniRef50_A0L9H3 RNase HI n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H3_MAGSM Length = 238 Score = 205 bits (521), Expect = 5e-52, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 93/140 (66%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 ++ ++TDG+C GNPGPGG+G RY + +TTNNRME++AAI ALE L E Sbjct: 87 EIILYTDGACSGNPGPGGWGVHGRYGEQMADQMGWAPQTTNNRMEMLAAIHALEPLPEGS 146 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDS YV+ GIT+WIH WK RGWK +D V NVDLW+RLDAA + W+W+KG Sbjct: 147 RVKIITDSAYVKDGITKWIHGWKVRGWKKSDGNTVLNVDLWKRLDAARQNRDVTWQWIKG 206 Query: 124 HAGHPENERCDELARAAAMN 143 HAGH NE+ D LAR A Sbjct: 207 HAGHAGNEQADRLARNAITQ 226 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 203 bits (517), Expect = 1e-51, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 87/147 (59%), Gaps = 5/147 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M + + ++ DG+C GNPG GG+GA + E G TTNNRMEL AAI + Sbjct: 1 MSQTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCP 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++I+ TDS YV+QGIT+WIH WKK+ WK VKN DLWQ+LDA I+W W Sbjct: 61 PDAQLIVWTDSNYVKQGITEWIHGWKKKNWK-----DVKNPDLWQKLDAVCAGRNIEWNW 115 Query: 121 VKGHAGHPENERCDELARAAAMNPTLE 147 +KGHAGH NE D+LA A E Sbjct: 116 IKGHAGHAGNEMADQLANLGADKTAQE 142 >UniRef50_P29253 Ribonuclease H n=100 Tax=Bacteria RepID=RNH_THET8 Length = 166 Score = 200 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 81/143 (56%), Positives = 104/143 (72%), Gaps = 1/143 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K+V +FTDG+CLGNPGPGG+ A+LR+ EK S G TTNNRMEL AAI L+ALKE Sbjct: 6 RKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE 65 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 CEV L TDS Y+++ T+ W+ W+KRGW+TA+ KPVKN DLW+ L A+ H++++ + Sbjct: 66 PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHF 125 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGH GHPENER D AR A + Sbjct: 126 VKGHTGHPENERVDREARRQAQS 148 >UniRef50_Q2Z0V7 Putative Ribonuclease HI n=1 Tax=Pseudomonas phage EL RepID=Q2Z0V7_9CAUD Length = 163 Score = 200 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + I+TDGS LGNPGPGGYG +Y+G E + S GY +TTNNR ELM+ I ALE Sbjct: 7 NDRYVIYTDGSALGNPGPGGYGVYAKYKGEEFSLSKGYYKTTNNRQELMSVIAALEEFGP 66 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTAD-KKPVKNVDLWQRLDAALGQHQIKWEW 120 + +V + TDSQYV + T+W+ W + W + +PVKN DL + L+ L ++++K+ W Sbjct: 67 NIKVDIFTDSQYVIKCATKWMRGWIRNNWMGYNSGQPVKNRDLLEVLNELLKKNKVKFHW 126 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGH+G NE+ D+LA+ AA NP D Y Sbjct: 127 VKGHSGDEGNEKADQLAKDAANNPEAHDMEY 157 >UniRef50_C8X6F1 Ribonuclease H n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X6F1_NAKMY Length = 235 Score = 199 bits (507), Expect = 2e-50, Method: Composition-based stats. Identities = 68/139 (48%), Positives = 93/139 (66%), Gaps = 1/139 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREK-TFSAGYTRTTNNRMELMAAIVALEALKE 61 +++++++DG+C GNPGPGG+GA++R G+ S G TTNNRMEL A + AL +L Sbjct: 4 QRIQVWSDGACRGNPGPGGWGALIRVPGQPDVELSGGEPATTNNRMELRAVVEALRSLPA 63 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 ++ + DS YV GIT+W+ W++ GW T K+PVKNVDLWQ LD +H + W+WV Sbjct: 64 GSQLTVHADSTYVLNGITKWLAGWRRNGWLTGSKQPVKNVDLWQDLDEQANRHTVDWQWV 123 Query: 122 KGHAGHPENERCDELARAA 140 KGHAG P NER D LA Sbjct: 124 KGHAGDPGNERADALANEG 142 >UniRef50_C6WBP3 Ribonuclease H n=9 Tax=Bacteria RepID=C6WBP3_ACTMD Length = 185 Score = 199 bits (506), Expect = 3e-50, Method: Composition-based stats. Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 1/137 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHC 63 V+I+TDG+C NPGPGG+G +LRY E+ G TTNNRMEL A I AL+AL Sbjct: 6 VDIYTDGACRPNPGPGGWGVLLRYGAHERELCGGEAGVTTNNRMELTAPIRALDALTRPS 65 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V L TDS YVR GITQWI WK +GW T K+PVKN DLW+ LD A +H+++W WVKG Sbjct: 66 VVRLHTDSTYVRNGITQWIKGWKAKGWLTKGKEPVKNADLWRELDRATARHRVEWRWVKG 125 Query: 124 HAGHPENERCDELARAA 140 HAG NER D+LA Sbjct: 126 HAGDEGNERADQLAERG 142 >UniRef50_C9KMB8 Ribonuclease HI (Fragment) n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMB8_9FIRM Length = 172 Score = 199 bits (506), Expect = 3e-50, Method: Composition-based stats. Identities = 76/143 (53%), Positives = 93/143 (65%), Gaps = 3/143 (2%) Query: 3 KQVEIFTDGSCLGNP-GPGGYGAILR--YRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 + I+TDGSCL NP GPGG+ A++R G G TTNNRMEL AAI AL Sbjct: 27 QDFVIYTDGSCLRNPDGPGGWAAVIREVATGVVTELHEGSPSTTNNRMELSAAIAALGFP 86 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 K +V L TDSQY++ GIT+W+ WK+RGWK AD +PV N DLWQ LDA +H + + Sbjct: 87 KHPAKVALYTDSQYLKNGITKWMSGWKRRGWKKADGQPVLNQDLWQELDALYSRHDVTFH 146 Query: 120 WVKGHAGHPENERCDELARAAAM 142 WVKGH G NERCD LA++ AM Sbjct: 147 WVKGHVGVELNERCDRLAKSEAM 169 >UniRef50_A5CEP5 Ribonuclease H n=33 Tax=cellular organisms RepID=RNH_ORITB Length = 168 Score = 198 bits (504), Expect = 5e-50, Method: Composition-based stats. Identities = 70/136 (51%), Positives = 89/136 (65%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V+I+TDG+C NPGPGG+G L Y+ EK TTNNRMEL A I AL LK + Sbjct: 14 VKIYTDGACSHNPGPGGWGVYLSYKNHEKKVYGSNINTTNNRMELTATIEALRLLKHSYK 73 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L TDSQYV+ GIT+WI W K W+T++K+ V NVDLWQ L + +HQ+ W WV+GH Sbjct: 74 VELYTDSQYVQMGITKWIKKWIKNNWETSNKQLVCNVDLWQLLYTLIQKHQVSWHWVRGH 133 Query: 125 AGHPENERCDELARAA 140 +G+ NE D+LA Sbjct: 134 SGNIGNEIADKLATNG 149 >UniRef50_Q14IN1 Ribonuclease H n=225 Tax=cellular organisms RepID=RNH_FRAT1 Length = 152 Score = 198 bits (504), Expect = 5e-50, Method: Composition-based stats. Identities = 76/141 (53%), Positives = 96/141 (68%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +V +TDG+C GNPG GG+GAIL Y G +K TTNNRMELMAAI L+ALK Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQALKRK 67 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C++ + TDS+Y++ GI +W+ NWK GWKTA KK VKN DLWQ LD+ +H + W WVK Sbjct: 68 CDITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWGWVK 127 Query: 123 GHAGHPENERCDELARAAAMN 143 GH+G+ NE+ DELA A Sbjct: 128 GHSGNAGNEKADELANKAIAE 148 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 197 bits (502), Expect = 8e-50, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 86/141 (60%), Gaps = 6/141 (4%) Query: 4 QVEIFTDGSCLGNPGPGGYGAI-LRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + +TDG+C GNPG GG+GA+ + G + G TTNNRMELM AI ALE + Sbjct: 38 RTLAYTDGACRGNPGKGGFGAVVILPTGEQIDICGGEAHTTNNRMELMGAIAALENSPKA 97 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + + +DS YV +GI++W+ WKK+ WK VKNV+LWQRLD Q QI W+WVK Sbjct: 98 LPIQIWSDSSYVIKGISEWLAGWKKKHWKN-----VKNVELWQRLDKLCEQRQIDWQWVK 152 Query: 123 GHAGHPENERCDELARAAAMN 143 GHAGH NE D+LA Sbjct: 153 GHAGHDGNEYADKLANQGIDQ 173 >UniRef50_Q2LWY9 Ribonuclease H n=7 Tax=Bacteria RepID=RNH_SYNAS Length = 173 Score = 197 bits (502), Expect = 8e-50, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 KQV I+TDG+CLGNPGPGGYG +L Y K S GY TTNNRME++AAI LEALK Sbjct: 22 KQVIIYTDGACLGNPGPGGYGVVLLYGEHRKELSGGYRLTTNNRMEILAAIKGLEALKSA 81 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L +DSQY+ I + W WK GWK ++ N DLW+RL +H I + WV Sbjct: 82 CSVTLYSDSQYLVNAINKGWAQRWKANGWKRNAREKALNPDLWERLLELCSRHDITFVWV 141 Query: 122 KGHAGHPENERCDELARAAAMNPTLE-DTGY 151 +GHA + ENERCD L++ AA L+ D GY Sbjct: 142 RGHANNKENERCDVLSKEAAGRADLKADPGY 172 >UniRef50_A9WK52 Ribonuclease H n=11 Tax=Bacteria RepID=A9WK52_CHLAA Length = 264 Score = 197 bits (502), Expect = 9e-50, Method: Composition-based stats. Identities = 75/152 (49%), Positives = 97/152 (63%), Gaps = 2/152 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V ++TDGS LGNPGPGGYG +LRY + + G+ TTNNRMELMA IV L ALK Sbjct: 109 VMMYTDGSALGNPGPGGYGVVLRYNDHYQELTGGFRLTTNNRMELMACIVGLRALKRPVS 168 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V L +DS+YV + WIH W+ + W ++ +PVKN DLW L HQ+++ WV G Sbjct: 169 VRLHSDSRYVVDAFRKGWIHRWQAQNWMRSETEPVKNADLWAELRLLCEGHQVEFVWVPG 228 Query: 124 HAGHPENERCDELARAAAMNPTL-EDTGYQVE 154 H G P+NERC ELA AAA P L D ++++ Sbjct: 229 HQGVPDNERCHELAIAAAARPDLPPDVAFEMQ 260 >UniRef50_A6C006 Ribonuclease H n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C006_9PLAN Length = 164 Score = 196 bits (499), Expect = 2e-49, Method: Composition-based stats. Identities = 77/143 (53%), Positives = 99/143 (69%), Gaps = 5/143 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYR--GREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 V+IFTDG+C GNPGPGG+G ILR+ G EK FS G TTNN+MEL A I LE LK Sbjct: 14 VQIFTDGACRGNPGPGGWGVILRHPATGTEKEFSGGEAVTTNNQMELQAVISGLELLKRT 73 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADK---KPVKNVDLWQRLDAALGQHQIKWE 119 V + TDS YV +G +W+ NWKK W+ + KPVKN +LW++LD L +H++++ Sbjct: 74 SRVEVITDSVYVAKGSKEWMPNWKKNNWRRREGKSWKPVKNEELWRKLDVLLERHEVRFT 133 Query: 120 WVKGHAGHPENERCDELARAAAM 142 +KGH+GHPENERCDELA A+ Sbjct: 134 QIKGHSGHPENERCDELAVEFAL 156 >UniRef50_B3EH35 Ribonuclease H n=6 Tax=Bacteria RepID=RNH_CHLL2 Length = 146 Score = 196 bits (498), Expect = 2e-49, Method: Composition-based stats. Identities = 69/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M K+V I+TDG+C GNPG GG+GA++ Y + S TTNNRMEL AAI L+ALK Sbjct: 1 MKKRVTIYTDGACSGNPGRGGWGALMMYGTVNRELSGYEPATTNNRMELTAAIEGLDALK 60 Query: 61 EHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E C V L +DS Y+ + Q W+ W W T+ KK V+N+DLW+++ + HQ+ + Sbjct: 61 EPCVVDLYSDSAYLVNALNQGWLKRWTTNNWTTSAKKSVENIDLWKKILKLVTLHQVTFH 120 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 VKGH+ +P N RCDELAR A N Sbjct: 121 KVKGHSDNPFNNRCDELARQAIKN 144 >UniRef50_C9LX49 Ribonuclease H n=2 Tax=Selenomonas RepID=C9LX49_9FIRM Length = 234 Score = 195 bits (495), Expect = 6e-49, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 92/140 (65%), Gaps = 2/140 (1%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++TDGSCL NP GPGG+ + G E +T S G TTNNRME+ AAI AL L + Sbjct: 92 CHVYTDGSCLRNPNGPGGWAVCIVRPGEEMETLSGGNPSTTNNRMEMTAAIEALRHLPKR 151 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 ++LSTDSQY++ GIT+WI +WK+RGWK AD PV N +LWQ LD + I + WVK Sbjct: 152 EPIVLSTDSQYLKNGITKWIFSWKRRGWKKADGTPVLNQELWQELDGLIAGRSIIFRWVK 211 Query: 123 GHAGHPENERCDELARAAAM 142 GHAGH NE CD LA+ A Sbjct: 212 GHAGHKYNEICDMLAKREAQ 231 >UniRef50_Q5FG88 Ribonuclease H n=4 Tax=Rickettsiales RepID=RNH_EHRRG Length = 146 Score = 194 bits (494), Expect = 6e-49, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 L +V ++TDG+C GNPGPGG+GA+L + EKT G+ TTNNRMEL A + AL+ L Sbjct: 5 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDV 64 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + L TDS YV+ GIT WI WK GW+TADK PVKN++LW LD + H+I W WV Sbjct: 65 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADKLPVKNLELWLELDKIVKYHKITWYWV 124 Query: 122 KGHAGHPENERCDELAR 138 K H+G+ NE+ D LAR Sbjct: 125 KAHSGNLYNEKADMLAR 141 >UniRef50_B7JVG1 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CYAP8 Length = 163 Score = 194 bits (494), Expect = 7e-49, Method: Composition-based stats. Identities = 76/146 (52%), Positives = 92/146 (63%), Gaps = 1/146 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K+V I+TDG+C GNPG GGYG +L Y K S G+ TTNNRME+MAAIV LE L Sbjct: 6 KKVLIYTDGACSGNPGSGGYGTVLIYNNHRKELSGGFRLTTNNRMEMMAAIVGLETLTIK 65 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L TDS+Y+ IT+ W WK GWK K+ KN DLW++L QH++ + WV Sbjct: 66 CAVTLYTDSRYLVDAITKGWAKKWKANGWKRNAKENAKNPDLWEKLLDLCSQHEVDFVWV 125 Query: 122 KGHAGHPENERCDELARAAAMNPTLE 147 KGHAGH ENE CD LA A+ L Sbjct: 126 KGHAGHQENEYCDRLAVRASQQTNLP 151 >UniRef50_Q2RKU0 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_MOOTA Length = 152 Score = 193 bits (491), Expect = 1e-48, Method: Composition-based stats. Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 1/135 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C GNPGPGG+GA+L Y + K S TTN RME+ AAI AL LKE Sbjct: 1 MKEVTIYTDGACSGNPGPGGWGAVLIYGDKRKELSGAEPSTTNQRMEITAAIAALRVLKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C V L +DS Y+ Q W+ W++ GW T K+PV+N DLW+ L +HQ++W Sbjct: 61 PCRVHLYSDSAYLVNAFRQGWLARWERNGWLTVKKQPVENQDLWRELLQVASRHQVEWLK 120 Query: 121 VKGHAGHPENERCDE 135 VKGH+ +PEN RCDE Sbjct: 121 VKGHSDNPENNRCDE 135 >UniRef50_A4XKQ3 Ribonuclease H n=2 Tax=Bacteria RepID=RNH_CALS8 Length = 145 Score = 191 bits (487), Expect = 4e-48, Method: Composition-based stats. Identities = 72/144 (50%), Positives = 93/144 (64%), Gaps = 1/144 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C NPGPGG+ AIL Y+G +K TTNNRMEL A I L+ALKE Sbjct: 1 MKEVVIYTDGACSKNPGPGGWCAILIYKGIKKVLKGFEENTTNNRMELKAIIEGLKALKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+V + TDS Y+ I Q WI W+K WKT++K+ VKN+DLWQ L L H +K+E Sbjct: 61 PCKVTVYTDSAYIVNAINQNWIGKWQKNNWKTSEKEEVKNIDLWQELLEFLKVHNVKFEK 120 Query: 121 VKGHAGHPENERCDELARAAAMNP 144 VKGH+ N CDE+AR+ Sbjct: 121 VKGHSTDTLNNMCDEIARSMIKEM 144 >UniRef50_Q2S3C1 RNase H n=3 Tax=Bacteria RepID=Q2S3C1_SALRD Length = 194 Score = 191 bits (487), Expect = 4e-48, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTF---SAGYTRTTNNRMELMAAIVALE 57 + +V I+TDG+C GNPGPGG+ AIL + G TTNNRMEL AA+ AL Sbjct: 46 FMNEVTIYTDGACSGNPGPGGWAAILLPDDDSDATDPLTGGEPHTTNNRMELTAALEALR 105 Query: 58 ALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 AL + V L TDS+Y+ + + W+ +W+ W+T+ VKN DLW+ L +H++ Sbjct: 106 ALDDRSRVALHTDSEYLSKAFNEGWLDSWQDNNWQTSSNDDVKNQDLWKALLEEADRHEV 165 Query: 117 KWEWVKGHAGHPENERCDELARAAAMN 143 W WVKGHA N DELA AA Sbjct: 166 DWVWVKGHADDELNIMADELAVAAMEQ 192 >UniRef50_A3DD79 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CLOTH Length = 147 Score = 191 bits (487), Expect = 5e-48, Method: Composition-based stats. Identities = 76/142 (53%), Positives = 96/142 (67%), Gaps = 1/142 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C GNPG GG+GAIL Y EK S TTNNRMEL+AAI AL+ LKE Sbjct: 1 MKKVSIYTDGACSGNPGDGGWGAILIYGNHEKEVSGFEKDTTNNRMELVAAINALKMLKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 CEV L +DS Y+ G Q W+ WKK GWKT++K+ VKN++LWQ LD H+I+W Sbjct: 61 PCEVDLYSDSAYLVNGFLQNWVEKWKKNGWKTSNKEEVKNMELWQELDRLSNIHKIRWIK 120 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGH+ + N RCD+LA Sbjct: 121 VKGHSDNEYNNRCDKLATDEIK 142 >UniRef50_B0K9M0 Ribonuclease H n=14 Tax=Bacteria RepID=RNH_THEP3 Length = 155 Score = 191 bits (486), Expect = 6e-48, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + VEI+TDG+C GNPGPGG+ A+L Y+G +K S TTNNRMEL A I L+ALK Sbjct: 5 IDVVEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENTTNNRMELKAVIEGLKALKR 64 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+V L +DS YV + W+ W+K W +DK PV+N DLW+ L HQ+ W Sbjct: 65 PCKVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQDLWKELLEISKNHQVNWIK 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLED 148 VKGHA + N CD LA T ++ Sbjct: 125 VKGHADNEYNNLCDRLATEQIKRNTRQN 152 >UniRef50_Q5PBQ8 Ribonuclease H n=10 Tax=Bacteria RepID=RNH_ANAMM Length = 154 Score = 191 bits (486), Expect = 6e-48, Method: Composition-based stats. Identities = 76/136 (55%), Positives = 94/136 (69%), Gaps = 1/136 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +V I+TDG+C GNPGPGG+GA+LR+ G E+ S G TTNNRMEL A I+AL AL Sbjct: 8 RVAIYTDGACSGNPGPGGWGAVLRFGDGGERRISGGSDDTTNNRMELTAVIMALAALSGP 67 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C V ++TDS YV+ GIT+WI WK GW+T++K VKNVDLW L+ H I+W WVK Sbjct: 68 CSVCVNTDSTYVKNGITEWIRKWKLNGWRTSNKSAVKNVDLWVELERLTLLHSIEWRWVK 127 Query: 123 GHAGHPENERCDELAR 138 HAG+ NE D LAR Sbjct: 128 AHAGNEYNEEADMLAR 143 >UniRef50_C2D756 Ribonuclease H n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D756_9ACTN Length = 183 Score = 190 bits (484), Expect = 9e-48, Method: Composition-based stats. Identities = 84/146 (57%), Positives = 103/146 (70%), Gaps = 6/146 (4%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRG-----REKTFSAGYTRTTNNRMELMAAIVALE 57 QV I+TDGS GNPGPGGYGA++ + ++ S GY +TTNNRMEL+A I+ALE Sbjct: 22 PQVIIWTDGSSRGNPGPGGYGAVMLFYDSAGREHKRELSCGYRQTTNNRMELLAPIIALE 81 Query: 58 ALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 LK C+V L +DSQYV Q WI W+KRGWKTA+K+PVKNVDLW+RL A+ H++ Sbjct: 82 ELKYPCKVELHSDSQYVIHAFQQHWIDGWQKRGWKTANKQPVKNVDLWKRLLRAMQPHEM 141 Query: 117 KWEWVKGHAGHPENERCDELARAAAM 142 + WVKGHAG NERCDELA AA Sbjct: 142 SFVWVKGHAGTELNERCDELATTAAD 167 >UniRef50_A2FNB2 RNase H family protein n=1 Tax=Trichomonas vaginalis RepID=A2FNB2_TRIVA Length = 280 Score = 190 bits (483), Expect = 1e-47, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K V+++TDG+C GNPGPGG+G + G G TTN RMELMAAI + Sbjct: 16 SKPVDVYTDGACSGNPGPGGWGVFCQQNGNSYKLGGGSKDTTNQRMELMAAIEGISLFPR 75 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + + TDS+YV GIT W+ WK RGWK +D V N++LW+RLD H + W+WV Sbjct: 76 CFSLNVYTDSKYVFNGITDWVRGWKSRGWKKSDGGKVLNLELWKRLDQVNSDHTVSWKWV 135 Query: 122 KGHAGHPENERCDELARAAAMNPTLEDTGY 151 KGH+ + N D++A A N T D + Sbjct: 136 KGHSVNHGNNMADQIAVANIPN-TKSDYNF 164 >UniRef50_D2R4V0 Ribonuclease H n=2 Tax=Planctomycetaceae RepID=D2R4V0_9PLAN Length = 157 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 76/143 (53%), Positives = 100/143 (69%), Gaps = 5/143 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +V +FTDG+C GNPGPGG+ ILR+ G+EK S G TTNNRMEL A + L AL Sbjct: 9 EVLLFTDGACSGNPGPGGWAYILRHVASGKEKECSGGELETTNNRMELTAVVEGLRALTR 68 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWK---TADKKPVKNVDLWQRLDAALGQHQIKW 118 V + TDS+YVR+G+++W+ WK+ GW+ KPVKNVDLW++LD + +HQ+K Sbjct: 69 TTAVEVLTDSEYVRKGMSEWMAGWKRNGWQRKENGKLKPVKNVDLWKQLDELVAKHQLKL 128 Query: 119 EWVKGHAGHPENERCDELARAAA 141 V GH+GHPEN+RCDELA AA+ Sbjct: 129 TRVAGHSGHPENDRCDELAVAAS 151 >UniRef50_Q5N0R7 Ribonuclease H n=3 Tax=Cyanobacteria RepID=Q5N0R7_SYNP6 Length = 261 Score = 188 bits (479), Expect = 4e-47, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 96/147 (65%), Gaps = 5/147 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + ++TDG+C GNPGPGG+G +++ G + TTNNRMEL AAI ALE ++H Sbjct: 8 LRLYTDGACTGNPGPGGWGVQIQFADGTVQELGGRDAATTNNRMELQAAIAALEFWRDHS 67 Query: 64 ---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 V L TDS+YV +GITQW+ W+++GWKTA KPV N DLW LD L +W++ Sbjct: 68 DQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPVLNQDLWMHLDD-LNSPAAQWQY 126 Query: 121 VKGHAGHPENERCDELARAAAMNPTLE 147 V+GH+G P NERCD++AR+ A L Sbjct: 127 VRGHSGDPGNERCDQIARSFAQQRPLP 153 >UniRef50_A9W185 Ribonuclease H n=9 Tax=Alphaproteobacteria RepID=RNH_METEP Length = 228 Score = 186 bits (473), Expect = 2e-46, Method: Composition-based stats. Identities = 64/140 (45%), Positives = 82/140 (58%), Gaps = 1/140 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + ++ DG C NPGPGG+ A+++ G TTNNRMEL AAI ALE E Sbjct: 5 RTIVYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFPEGA 64 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DSQYV + +T+W+ WK RGW+TA PVKN+DL QRLDA ++W WV+G Sbjct: 65 AIEMRCDSQYVVKSVTEWMRGWKARGWRTATG-PVKNIDLMQRLDALAAARDVRWTWVRG 123 Query: 124 HAGHPENERCDELARAAAMN 143 HAG NER D LA Sbjct: 124 HAGEAGNERADRLATLGRRE 143 >UniRef50_A9B1F3 Ribonuclease H n=2 Tax=Bacteria RepID=A9B1F3_HERA2 Length = 236 Score = 186 bits (472), Expect = 2e-46, Method: Composition-based stats. Identities = 73/151 (48%), Positives = 93/151 (61%), Gaps = 3/151 (1%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +F+DG GNPGPGGYG +LR + + G+ RTTNNRMELM I L+AL + Sbjct: 86 KVVLFSDGGSDGNPGPGGYGVVLRSGSEMRELTGGFARTTNNRMELMGVITGLQALSQPS 145 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 +V++ +DS YV G+ + W W K GW+T PVKN DLWQ+L H I+W V Sbjct: 146 KVVVYSDSAYVINGMHKGWAERWSKNGWRTTTG-PVKNPDLWQQLLELAQGHTIEWVQVP 204 Query: 123 GHAGHPENERCDELARAAAMNPTLE-DTGYQ 152 GHAG +NERCD LA AA P L D GY+ Sbjct: 205 GHAGVKDNERCDRLAVQAAHQPNLPIDQGYR 235 >UniRef50_Q8DM24 Ribonuclease H n=27 Tax=Cyanobacteria RepID=RNH_THEEB Length = 159 Score = 184 bits (468), Expect = 7e-46, Method: Composition-based stats. Identities = 74/144 (51%), Positives = 94/144 (65%), Gaps = 5/144 (3%) Query: 7 IFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEA---LKEH 62 I+TDG+C GNPGPGG+G ++ + G + TTNNRMEL AAI AL+A L Sbjct: 7 IYTDGACEGNPGPGGWGVVIYFTDGSVHELGGHHPATTNNRMELQAAIEALKAWRQLAPG 66 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + L TDS+YV +GIT+WIH+WK+RGWKTA KKPV N DLWQ LDA L ++W V+ Sbjct: 67 SAIALYTDSEYVLRGITEWIHHWKRRGWKTAAKKPVLNQDLWQELDA-LNDPLVQWHHVR 125 Query: 123 GHAGHPENERCDELARAAAMNPTL 146 GH G NERCD +AR + + Sbjct: 126 GHRGDVGNERCDLIARRLSRGQPI 149 >UniRef50_A5GAH5 Ribonuclease H n=6 Tax=Desulfuromonadales RepID=A5GAH5_GEOUR Length = 484 Score = 184 bits (467), Expect = 9e-46, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 87/138 (63%), Gaps = 2/138 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+ DGS GPGGYG ILRY EK S +T+ RMEL AAI LEAL + Sbjct: 292 VEIYCDGSGRD-SGPGGYGVILRYGEHEKELSGFEAASTSQRMELTAAIRGLEALHKPRR 350 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V + +DSQY+ +G+++W+H W + + +KN DLWQ+L A H++ WEWV+GH Sbjct: 351 VRVFSDSQYLVRGMSEWLHGWIR-TGRLETPDALKNQDLWQKLSALSANHEVTWEWVRGH 409 Query: 125 AGHPENERCDELARAAAM 142 GHP NERCD LA+ AA Sbjct: 410 DGHPFNERCDRLAKRAAE 427 >UniRef50_A7FR34 Ribonuclease H n=11 Tax=Firmicutes RepID=RNH_CLOB1 Length = 149 Score = 183 bits (465), Expect = 1e-45, Method: Composition-based stats. Identities = 67/143 (46%), Positives = 88/143 (61%), Gaps = 4/143 (2%) Query: 2 LKQVEIFTDGSCLGNPG---PGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 +K+V I+TDG+C GN G YG +L Y +K + TTNN MEL A + AL Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60 Query: 59 LKEHCEVILSTDSQYVRQGIT-QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 LKE C + L +DS YV I +W+ NWKK WKTA K PVKN +LW++LD L +H +K Sbjct: 61 LKEPCSIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120 Query: 118 WEWVKGHAGHPENERCDELARAA 140 + VKGH+ + N RCD+LA A Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEA 143 >UniRef50_Q17XJ7 Ribonuclease H n=15 Tax=Campylobacterales RepID=RNH_HELAH Length = 143 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 72/141 (51%), Positives = 89/141 (63%), Gaps = 5/141 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 ++++EIF DGS LGNPGPGGY AILRY+ +EK S G TTNNRMEL A AL+ LK Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEKFTTNNRMELRALNEALKILKR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C + L +DSQYV Q I W+ W+K+ + VKNVDLW+ H I W+ Sbjct: 61 PCHITLYSDSQYVCQAINVWLIGWQKKNFAK-----VKNVDLWKEFLEVSKGHSIVAIWI 115 Query: 122 KGHAGHPENERCDELARAAAM 142 KGH GH +NERCD LA+ A Sbjct: 116 KGHNGHAQNERCDSLAKLEAQ 136 >UniRef50_B7J4E2 Ribonuclease H n=2 Tax=Acidithiobacillus ferrooxidans RepID=RNH_ACIF2 Length = 158 Score = 181 bits (461), Expect = 4e-45, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 92/137 (67%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K +E+FTDG C GNPG G +G LR G+E+ TTNNRMEL AA+ LEALK Sbjct: 4 KIIELFTDGGCRGNPGIGAWGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLEALKRP 63 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 V + +DS+Y+R G+TQW+ W++RGW+TA VKN D+W+ L A +HQ++WEWV+ Sbjct: 64 SAVRVISDSRYLRDGMTQWLAGWQRRGWRTAGGDAVKNRDIWELLAAVAARHQVQWEWVR 123 Query: 123 GHAGHPENERCDELARA 139 GH+GH ENER D L Sbjct: 124 GHSGHIENERVDALLNR 140 >UniRef50_C5GNS4 RNase H domain-containing protein n=4 Tax=Onygenales RepID=C5GNS4_AJEDR Length = 434 Score = 181 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 55/151 (36%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 ++I+TDGS L N G I Y G + R TN R EL A I AL+ Sbjct: 243 LKIYTDGSSLRNGAMGAKAGIGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIAP 302 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK--- 117 H +V + TDS+Y +T W NW++ W TA KPV+N DL Q + + + + Sbjct: 303 RHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILMKIEERTVMNVK 362 Query: 118 --WEWVKGHAGHPENERCDELARAAAMNPTL 146 +EWV+GH+ P NE D LA A N L Sbjct: 363 TLFEWVRGHSRDPGNEAADRLAVNGAKNAPL 393 >UniRef50_C4V6H3 Ribonuclease H n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V6H3_9FIRM Length = 217 Score = 181 bits (460), Expect = 6e-45, Method: Composition-based stats. Identities = 75/142 (52%), Positives = 91/142 (64%), Gaps = 4/142 (2%) Query: 6 EIFTDGSCLGNPG-PGGYGAILR--YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 I TDGSCL NPG GG+ A++ G + S G TTNNRMEL AA++AL A+ E Sbjct: 75 IIHTDGSCLRNPGGAGGWAAVIETAATGAVEERSGGAPETTNNRMELTAALMALSAVPEG 134 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 V L TDSQY++ T+ W+ WKKRGWK AD +PV N DLW +LD A +++ WV Sbjct: 135 ARVALYTDSQYLKNAFTKFWLPAWKKRGWKKADGEPVLNQDLWVQLDVAFAARHVQFHWV 194 Query: 122 KGHAGHPENERCDELARAAAMN 143 KGHAG P NERCD LARA A Sbjct: 195 KGHAGDPRNERCDALARAEAER 216 >UniRef50_UPI0000587365 PREDICTED: similar to Ribonuclease H1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587365 Length = 234 Score = 181 bits (459), Expect = 8e-45, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 79/153 (51%), Gaps = 6/153 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEAL 59 + ++TDG+C N G + Y G + + TN R EL AA+ ALE + Sbjct: 82 DNLVVYTDGACSHNGFSGAKAGLGVYWGDNHPLNTSARLEGKQTNQRAELTAALRALEQI 141 Query: 60 KEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 EH + V L TDS+Y +T WIH WKK GWKTA K V N + +LD + + Sbjct: 142 NEHHKRRKVTLYTDSKYTINCVTDWIHRWKKNGWKTAQKTDVINKEDLVKLDKLNRELDV 201 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDT 149 KWE+V GH NER D+LAR A P L ++ Sbjct: 202 KWEYVPGHKNVYGNERADKLAREGAAQPLLGNS 234 >UniRef50_B6BTS2 RNase H n=1 Tax=beta proteobacterium KB13 RepID=B6BTS2_9PROT Length = 149 Score = 180 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 69/141 (48%), Positives = 85/141 (60%), Gaps = 4/141 (2%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +I+TDGSC GNPGPGG+ I+ K S +TTNN+MEL AAI L EH Sbjct: 2 SFKIYTDGSCHGNPGPGGWAFIVVANDEVVKEKSGSMEKTTNNQMELSAAIQGLFYFNEH 61 Query: 63 ---CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 EV L TDS+YV GI WIH WKK W+T+ KKPVKN +LW+ LD + + W Sbjct: 62 VESKEVELFTDSKYVIDGINSWIHGWKKNNWRTSTKKPVKNEELWRTLDELNSKLTVNWI 121 Query: 120 WVKGHAGHPENERCDELARAA 140 WVKGH+G N++ D LA A Sbjct: 122 WVKGHSGDIFNDKVDLLANYA 142 >UniRef50_D2Q8L6 Rnh Ribonuclease H n=2 Tax=Bifidobacterium dentium RepID=D2Q8L6_9BIFI Length = 400 Score = 178 bits (453), Expect = 4e-44, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 82/151 (54%), Gaps = 12/151 (7%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP GP G+G + + G T TN EL A + Sbjct: 3 ITVSTDGSALGNPNGPMGWGWADHDLNAGGTPGHDHAGDCDAGGATNGTNQIGELCAVLE 62 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A +++ TDSQY T+W+H WKK GWK + KKPVKN L + +DA + Q Sbjct: 63 ALRAHPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIKAIDAEISQR 122 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAAMN 143 +K+ WVKGHAG+ NE+ DELAR A + Sbjct: 123 PGPVKFVWVKGHAGNAGNEKVDELARTYADD 153 >UniRef50_C1D179 Putative ribonuclease H n=1 Tax=Deinococcus deserti VCD115 RepID=C1D179_DEIDV Length = 183 Score = 178 bits (452), Expect = 5e-44, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 1/138 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++VE+++DG+C G GG+ IL+YRG+E S TTNNRMEL + L+ LK Sbjct: 38 EEVELYSDGACDTTQGHGGWATILKYRGQELVLSGNEEATTNNRMELRGLLEGLKVLKRP 97 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V + TDSQY+R+ T WI W++ GWKTA PVKN +LW+ L A H + + WV Sbjct: 98 CQVRVVTDSQYLRKAFTDGWILKWQRNGWKTAGGDPVKNRELWEELIAQARTHALTFIWV 157 Query: 122 KGHAGHPENERCDELARA 139 KGHAGH ENER D LA Sbjct: 158 KGHAGHGENERVDVLAVQ 175 >UniRef50_A6FRK2 Ribonuclease H n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FRK2_9RHOB Length = 186 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 72/139 (51%), Positives = 90/139 (64%), Gaps = 5/139 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAIL---RYRGREK--TFSAGYTRTTNNRMELMAAIVALEA 58 V I+TDG+C GNPGPGG+GAIL R+ G K + TT NRME+MAAI ALE Sbjct: 29 DVVIYTDGACAGNPGPGGWGAILIDQRHGGASKHSEIAGYDIDTTGNRMEMMAAIQALEV 88 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 L V++ +D+QYV + IT+WI WK GWK VKN+DLWQRLD A QH ++W Sbjct: 89 LGRGVNVLIWSDNQYVIRSITRWIKKWKANGWKVKGGAMVKNIDLWQRLDEAQAQHNVRW 148 Query: 119 EWVKGHAGHPENERCDELA 137 WVK H+G+ NE D+LA Sbjct: 149 RWVKSHSGNVGNEMADKLA 167 >UniRef50_A5US20 Ribonuclease H n=2 Tax=Bacteria RepID=A5US20_ROSS1 Length = 214 Score = 178 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 1/138 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +EIFTDG+C GNPGPGG+ A++ G RTTNNRMEL AA+ AL + + Sbjct: 2 IEIFTDGACRGNPGPGGWAAVIVQNGEVIEIGGAEERTTNNRMELRAAVEALRRVPPNAP 61 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L+TDS+Y+ G T W+ WKKR W T ++ PV++ DLW+ LDA Q + W++V+GH Sbjct: 62 VRLTTDSEYLLHGATHWLLLWKKRNWLTTEQTPVEHRDLWEELDALADQR-VTWQYVRGH 120 Query: 125 AGHPENERCDELARAAAM 142 +G P NER + LA+A A Sbjct: 121 SGDPWNERANTLAQAYAD 138 >UniRef50_Q9RVX2 Ribonuclease H n=1 Tax=Deinococcus radiodurans RepID=Q9RVX2_DEIRA Length = 179 Score = 178 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 69/137 (50%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + VE+++DG+C G GG+ ILRY RE S TTNNRMEL + L L+ Sbjct: 35 QVVELYSDGACDTTKGHGGWATILRYGERELVLSGNEENTTNNRMELRGLLEGLRTLRRP 94 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V + TDSQY+R+ T WI NW++ GWKTA K+PVKN DLW+ L H + + WV Sbjct: 95 CQVKVITDSQYLRKAFTDGWILNWQRNGWKTASKEPVKNQDLWEELIELAKVHALTFLWV 154 Query: 122 KGHAGHPENERCDELAR 138 KGHAGH ENER DELA Sbjct: 155 KGHAGHGENERVDELAV 171 >UniRef50_B2S2V0 Ribonuclease H n=4 Tax=Bacteria RepID=RNH_TREPS Length = 169 Score = 178 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 89/158 (56%), Gaps = 15/158 (9%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREK-------------TFSAGYTRTTNNRMELMA 51 + ++TDG+CLGNPGPGG+ L T S +TNNRMEL A Sbjct: 7 LTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTRSGSAYPSTNNRMELCA 66 Query: 52 AIVALEALKEHCE--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 I AL+ V++ TDSQYVR+GITQWIH WK GWKTA K+PVKN DLW+ L A Sbjct: 67 VINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWEALSA 126 Query: 110 ALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 ++W WVKGHAG P NE CD LA AA Sbjct: 127 LADALSVEWRWVKGHAGDPYNELCDRLATDAARRAAQS 164 >UniRef50_A8ZXF3 Ribonuclease H n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXF3_DESOH Length = 192 Score = 177 bits (450), Expect = 8e-44, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 90/154 (58%), Gaps = 8/154 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + ++TDGS +GNPGPGGYG +++ K S GY TTNNRMELMA IVAL L++ Sbjct: 40 NAIIVYTDGSAIGNPGPGGYGVVIKGG---KEISGGYKLTTNNRMELMAVIVALRELQDD 96 Query: 63 --CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 +++ +DS+YV I + W+ WK+ W + V N DLW++ + +++ Sbjct: 97 DERPIVIYSDSKYVVDSINKGWVLGWKENKWAVTNGTRV-NSDLWKKFLRLRSKVDVEFR 155 Query: 120 WVKGHAGHPENERCDELARAAAMNPTLE-DTGYQ 152 WVKGHA P N + D+LA +AA L D GY Sbjct: 156 WVKGHATDPLNIKADQLANSAARQKRLSHDKGYD 189 >UniRef50_Q6MIM3 Ribonuclease H n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIM3_BDEBA Length = 263 Score = 177 bits (450), Expect = 9e-44, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 92/148 (62%), Gaps = 6/148 (4%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 + I++DG+C GNPGPGG+G+++ Y + + G TTNNRME+ AA+ AL+A+ Sbjct: 18 RDHIMIYSDGACSGNPGPGGWGSVILYPDNQVQELGDGEKSTTNNRMEMTAALEALKAVA 77 Query: 61 E-HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH----Q 115 V TDS Y+ +GITQW+H W++RGWKTA+ V N D+W+ L + + Sbjct: 78 HMKVPVRFYTDSTYLIRGITQWVHGWRRRGWKTAEGGEVSNQDIWEDLSHVVAARGTQGK 137 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMN 143 I+W + +GH G P NERCD +A A + N Sbjct: 138 IEWHYSRGHVGIPGNERCDRIAVAFSKN 165 >UniRef50_A7NII6 Ribonuclease H n=3 Tax=Bacteria RepID=A7NII6_ROSCS Length = 245 Score = 177 bits (450), Expect = 9e-44, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +FTDG G GGYG IL++R R K S G+ TTNNRME+ A I L ALK Sbjct: 95 KVVMFTDGCFDSESGSGGYGVILKHRDRTKEISGGFRETTNNRMEIRACIEGLRALKRPS 154 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 EV++ +DS+YV +++ W+ WK +GW +K +N DLW++L QH++++ WVK Sbjct: 155 EVVIFSDSKYVVDSMSKGWVQRWKDQGWMRNEKDQAENSDLWEQLLELCNQHRVEFRWVK 214 Query: 123 GHAGHPENERCDELARAAAMNPTLE 147 GH ENERCD+LA AA L Sbjct: 215 GHNHTKENERCDQLASEAAKRSDLP 239 >UniRef50_C5EB64 Ribonuclease H n=2 Tax=Bifidobacterium longum RepID=C5EB64_BIFLO Length = 345 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYGAI----------LRYRGREKTFSAGYTRTTNNRMELMAAI 53 + + TDGS LGNP GP G+ + G T TN EL A + Sbjct: 52 ITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVL 111 Query: 54 VALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ 113 AL A +++ +DSQY T+W+ WKK GWK + KKPVKN +L Q +D + Q Sbjct: 112 EALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQ 171 Query: 114 H--QIKWEWVKGHAGHPENERCDELARAAA 141 + + WVKGHAG+ NE DELAR A Sbjct: 172 RPGPVDFRWVKGHAGNEGNELVDELARTYA 201 >UniRef50_D1NV93 Ribonuclease H n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NV93_9BIFI Length = 409 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 79/149 (53%), Gaps = 10/149 (6%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGRE-------KTFSAGYTRTTNNRMELMAAIVAL 56 + + TDGS LGNP GP G+ G E + G T TN EL A + AL Sbjct: 34 ITVSTDGSALGNPNGPMGWAWADHTDGDEASHHHGGDCDAGGATNGTNQIGELCAVLQAL 93 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 A +I+ TDSQY T+W+H WKK GWK + K+PVKN L + +DA L Sbjct: 94 RAHPGSEPLIIETDSQYAINCSTKWVHGWKKNGWKNSKKEPVKNAPLIKAIDAELRDRAG 153 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMN 143 + + WVKGHAG+ NE+ D LAR A + Sbjct: 154 SVTFVWVKGHAGNEGNEKVDLLARTYAED 182 >UniRef50_C8VF62 Ribonuclease H, putative (AFU_orthologue; AFUA_1G07180) n=2 Tax=Emericella nidulans RepID=C8VF62_EMENI Length = 463 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 79/160 (49%), Gaps = 11/160 (6%) Query: 5 VEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGY--TRTTNNRMELMAAIVALEAL 59 + I+TDGS L N G G + S +R TN R EL A + AL+ Sbjct: 280 LRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRALDIA 339 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH---QI 116 H +V + TDSQY +T W W+ W TADKKPV+N DL + + + + + ++ Sbjct: 340 PRHRDVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDERTELRV 399 Query: 117 K--WEWVKGHAGHPENERCDELARAAAMN-PTLEDTGYQV 153 K +EWVKGH P NE D LA A + ++ GY + Sbjct: 400 KTLFEWVKGHDADPGNEAADRLAVNGAQRGASEQELGYDI 439 >UniRef50_C2FU18 Ribonuclease H n=2 Tax=Sphingobacterium spiritivorum RepID=C2FU18_9SPHI Length = 169 Score = 174 bits (443), Expect = 5e-43, Method: Composition-based stats. Identities = 82/169 (48%), Positives = 108/169 (63%), Gaps = 20/169 (11%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILR--YRGR---------EKTFSAGYTRTTNNRMEL 49 ML +E++TDG+ GNPGPGGYG ILR Y G EKTFS G+ RTTNNRMEL Sbjct: 1 MLPMIELYTDGASSGNPGPGGYGTILRTRYSGENEAFKGKLIEKTFSEGFRRTTNNRMEL 60 Query: 50 MAAIVALEALKEHCE-VILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 MA I+ LEALK + V + +DS+YV I +W++ W ++G++ KN DLW RL Sbjct: 61 MAVIIGLEALKSPQQQVTIYSDSKYVIDAIDKKWVYGWIQKGFQGK-----KNKDLWIRL 115 Query: 108 DAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPT--LEDTGYQVE 154 + HQ++ WVKGHAGHP+NERCD+LA AA+ + DT ++ E Sbjct: 116 MKSYKLHQVRLVWVKGHAGHPDNERCDQLAVAASKDKANWKIDTVFEQE 164 >UniRef50_A6GW41 Ribonuclease HI n=13 Tax=Bacteria RepID=A6GW41_FLAPJ Length = 159 Score = 174 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 10/159 (6%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVALEA 58 M QV I+TDG+ GNPGPGGYG ++ G +K F G+ TTNNRMEL+A IV LE Sbjct: 1 MNYQVHIYTDGAAKGNPGPGGYGVVMELVGTAFKKEFYEGFRHTTNNRMELLAVIVGLEK 60 Query: 59 LKEHC-EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 LK +V++ +DS+YV + + W+ W+K+G+K KN DLW+RL +HQ+ Sbjct: 61 LKNPNMKVLVVSDSKYVVDSVEKKWVLGWEKKGFKDR-----KNSDLWKRLLIIYRKHQV 115 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLE-DTGYQVE 154 ++W+KGH HP+NERCD+LA A+ TL D Y+ E Sbjct: 116 DFKWIKGHNSHPQNERCDQLAVFASNQKTLSVDAFYEKE 154 >UniRef50_Q7V474 Possible ribonuclease HI n=12 Tax=Bacteria RepID=Q7V474_PROMM Length = 257 Score = 174 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 68/140 (48%), Positives = 94/140 (67%), Gaps = 5/140 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + V TDG+C GNPGPGG+GA+LR+ G + F TTNNRMEL AA+ LE LKE Sbjct: 7 RVVAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGYAPATTNNRMELQAALHVLEQLKE 66 Query: 62 ---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 H ++ + TDS+Y+ G+++W+ WK++GW+TA KPV N DLW+ LD A H + Sbjct: 67 LPCHPDLKIRTDSKYLIDGLSKWMAGWKRKGWRTAAGKPVLNQDLWRALDRARLDH-VPL 125 Query: 119 EWVKGHAGHPENERCDELAR 138 +VKGH+G P+NER D++A Sbjct: 126 AYVKGHSGDPDNERVDQIAV 145 >UniRef50_A1A0B0 Ribonuclease H n=8 Tax=Bifidobacterium RepID=A1A0B0_BIFAA Length = 445 Score = 174 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 12/149 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP GP G+ + + G T TN EL A + Sbjct: 3 ITVSTDGSALGNPNGPMGWAWADHEPAAGGKPGHEHAGDCDAGGATNGTNQIGELCAVLE 62 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A ++++ TDSQY T+W+ WK+ GWK + KKPVKN DL + +D + Sbjct: 63 ALRAHPGSEDLVIETDSQYAINCSTKWVQGWKRNGWKNSQKKPVKNADLIRAIDNEIAHR 122 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAA 141 +++ WVKGHAG+ NE+ DELAR A Sbjct: 123 AGSVRFVWVKGHAGNAGNEKVDELARTYA 151 >UniRef50_A2QPK3 Contig An07c0360, complete genome n=16 Tax=Eurotiomycetidae RepID=A2QPK3_ASPNC Length = 410 Score = 174 bits (442), Expect = 7e-43, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 9/148 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 + I+TDGS L N + Y G + + R TN R EL A + AL+ Sbjct: 236 LRIYTDGSSLKNGKALASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRALDIAP 295 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH---QIK 117 H +V + TDSQY +T W W++ W TA KPV N DL + + + + + ++K Sbjct: 296 RHRDVTIFTDSQYAINCVTVWFTKWRRNNWMTAGNKPVDNKDLVESILSKIEERNELKVK 355 Query: 118 --WEWVKGHAGHPENERCDELARAAAMN 143 +EWVKGH+ HP NE D LA + A Sbjct: 356 TLFEWVKGHSSHPGNEAADRLAVSGARR 383 >UniRef50_C0VYC6 Prolyl aminopeptidase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VYC6_9ACTO Length = 662 Score = 173 bits (440), Expect = 1e-42, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 + DGS L NPGP G+ + + G+ TNN EL A + L++ Sbjct: 3 IIAAADGSALKNPGPTGWAWAI---DESTWRAGGFKHGTNNIGELYAVLDLLKSTAHLDE 59 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DS+YV +T+WIH WK++ WK AD PV NV+L Q +DA + ++ +EWV+G Sbjct: 60 PLHILADSRYVIDSMTKWIHGWKRKDWKKADGSPVLNVELIQEIDALMQGRKVTFEWVRG 119 Query: 124 HAGHPENERCDELARAAA 141 H+GH NE DE ARAAA Sbjct: 120 HSGHDMNEFVDEKARAAA 137 >UniRef50_B6JI04 Ribonuclease HI (RNase HI) n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JI04_OLICO Length = 255 Score = 173 bits (440), Expect = 1e-42, Method: Composition-based stats. Identities = 72/144 (50%), Positives = 89/144 (61%), Gaps = 1/144 (0%) Query: 3 KQVEIFTDGSC-LGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K ++TDGS G G GG+ AI+R G +T NRME++AA+VALE L Sbjct: 109 KTAIVYTDGSAERGGKGRGGWAAIIRAGFDIVEIFGGAEASTINRMEIIAAVVALEILPA 168 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L TDS+Y+R GIT WI WK+ GW T ++PVKN DLW+RLDAA H + W+WV Sbjct: 169 GCVVKLHTDSKYLRNGITNWIDGWKRNGWLTVAREPVKNEDLWRRLDAARLSHTVTWKWV 228 Query: 122 KGHAGHPENERCDELARAAAMNPT 145 K H G NER DELA+ A N T Sbjct: 229 KAHVGIRLNERADELAKFARHNIT 252 >UniRef50_Q2GDA1 Ribonuclease H n=2 Tax=Neorickettsia RepID=RNH_NEOSM Length = 151 Score = 173 bits (439), Expect = 1e-42, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 2/146 (1%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVALEAL- 59 +++ I+TDG+CLGNPGPGG+ A++ RG EK S +TNN+MEL+A I ALE+ Sbjct: 1 MEEYVIYTDGACLGNPGPGGWAAVIIQRGTNEKIISGREADSTNNKMELLAVIKALESFE 60 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 ++ V + TDS YV +GIT WI +W K W+ + VKN ++W RL H ++W Sbjct: 61 QKGKRVTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKEMWVRLHGIAAAHTVRWL 120 Query: 120 WVKGHAGHPENERCDELARAAAMNPT 145 WVK H G NE D +AR A + T Sbjct: 121 WVKAHNGDHYNEIVDRVARKEAASFT 146 >UniRef50_A7SAK2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SAK2_NEMVE Length = 272 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 5/142 (3%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALKE- 61 ++TDG C N G + Y G + R TN R E++AA +ALE+ KE Sbjct: 127 VVYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALESAKEM 186 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 +V + TDS+Y G+T WI +WKK GWKTAD K VKN++ +Q+LD + + W Sbjct: 187 GFTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDVKNLEDFQKLDKLCSEIDVHWTH 246 Query: 121 VKGHAGHPENERCDELARAAAM 142 V GHAG NE D+LA+ A Sbjct: 247 VAGHAGIEGNEIADQLAKGGAD 268 >UniRef50_A7IEA7 Ribonuclease H n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IEA7_XANP2 Length = 245 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 70/145 (48%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 5 VEIFTDGSCLGNPGPGGY-GAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + TDGSCLGNPGPGG+ G IL G +T + TTNNRMEL AA++AL AL Sbjct: 2 IAAHTDGSCLGNPGPGGWAGVILDADGTARTLTGFAPDTTNNRMELTAALMALGALPADV 61 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI-KWEWVK 122 +L DS+YV +G+ W+ + ++RGWKTA KPV N DLW++L AA + + + WV+ Sbjct: 62 PSVLFCDSEYVVKGLNTWLASRERRGWKTAQDKPVANADLWRQLSAAKVERPLAEIRWVR 121 Query: 123 GHAGHPENERCDELARAAAMNPTLE 147 GHAG+ NE D LARA A L Sbjct: 122 GHAGNTMNETVDRLARAEAEKAKLS 146 >UniRef50_Q92S39 Probable ribonuclease HI protein n=1 Tax=Sinorhizobium meliloti RepID=Q92S39_RHIME Length = 169 Score = 171 bits (435), Expect = 4e-42, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 86/149 (57%), Gaps = 8/149 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILR------YRGREKTFSAGYTRTTNNRMELMAAIVAL 56 ++ + TDG+C NPGPGG+GA+L+ + + TTNNRMEL A + L Sbjct: 13 RRYIVHTDGACRNNPGPGGWGAVLQLEEEGEIIKEKDLSGTTISETTNNRMELSAVLGGL 72 Query: 57 EALKEHC-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-H 114 LK+ + + +DS+YV G++ W+ WK+ GW+ ADK V N+DLWQ LD Sbjct: 73 RRLKDKTIPITVRSDSKYVVNGMSTWLEGWKRNGWRKADKTTVLNMDLWQELDQLQETLG 132 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMN 143 I W WVKGH+G P N+RCD LA A N Sbjct: 133 PISWVWVKGHSGDPMNDRCDRLANVAIDN 161 >UniRef50_A4Y094 Ribonuclease H n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y094_PSEMY Length = 162 Score = 171 bits (435), Expect = 4e-42, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 7/152 (4%) Query: 6 EIFTDGSCLGNP---GPGGYGAILR-YRGREKTFSAGYT---RTTNNRMELMAAIVALEA 58 I+TDG+C N G+GA L G+ +A + TNNR EL+AA+ AL Sbjct: 5 TIYTDGACTNNGQANARAGWGAYLVNPEGKTLKLAAPVPLEQKQTNNRAELLAAVEALRR 64 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + + L +DSQ + +G +W+ WK + WK +DKKPV + DLW+++D L + + Sbjct: 65 CTKPGPITLYSDSQLLVKGANEWLPGWKAKDWKKSDKKPVDHRDLWEQIDQFLQERDVTL 124 Query: 119 EWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 WV+GHAGHP NE D LA A +++ G Sbjct: 125 IWVEGHAGHPGNEVADALADLGASGKRIQELG 156 >UniRef50_A9WMA2 Ribonuclease HI n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WMA2_RENSM Length = 290 Score = 171 bits (435), Expect = 5e-42, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 5/139 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--H 62 + DGS L NPGP G+ + + + G+ TNN+ ELMA + A Sbjct: 3 ITAAADGSALNNPGPAGWAWYI---DEQTWRAGGWPHGTNNQGELMAVLDLFRATAHLPA 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + + DSQYV +T+W+ WK++GW+ AD KPV NV++ + +DAAL + ++EWVK Sbjct: 60 EPLHILCDSQYVINCVTKWMPGWKRKGWRKADGKPVLNVEMLKEIDAALVRRTYQFEWVK 119 Query: 123 GHAGHPENERCDELARAAA 141 GHAGH NE D ARAA+ Sbjct: 120 GHAGHDLNEAADSKARAAS 138 >UniRef50_Q8D3D3 Ribonuclease H n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RNH_WIGBR Length = 157 Score = 171 bits (434), Expect = 6e-42, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 107/153 (69%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M K+++IF DG+CLGNPGPGGYG I+ + K S GY TTNNRME+MAAI+ALE+L Sbjct: 1 MKKKIKIFIDGACLGNPGPGGYGVIICGKKLYKEISNGYYLTTNNRMEIMAAIIALESLH 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + +I++TDS+Y++ GIT+WI WK WKT + K VKN+DLW +L+ +H I W W Sbjct: 61 DMYNIIINTDSKYLKNGITKWIKVWKNNKWKTNNNKSVKNIDLWIKLEYLSKKHFINWNW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 +KGH + +++RCD LA+ +A NP D YQ Sbjct: 121 IKGHTNNIKHDRCDFLAKISAKNPNAIDKIYQK 153 >UniRef50_C3Y169 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y169_BRAFL Length = 203 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 6/149 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRG--REKTFSAGYT-RTTNNRMELMAAIVALEALKEH 62 ++TDG C N G I Y G E+ SA R TNNR E+ AA A+E+ KE Sbjct: 51 VVYTDGCCTDNGFHGASAGIGVYWGPGHERNMSAKLPGRQTNNRAEIHAARYAIESAKEM 110 Query: 63 --CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ L TDSQ++ GIT+WIH WKK GWK + KPV+N + +Q LD+AL ++W Sbjct: 111 GLAKISLHTDSQFLINGITKWIHGWKKNGWKLSTGKPVQNKEDFQSLDSALQGIDVQWVH 170 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDT 149 V+GH G P NE D LA+ + +LED Sbjct: 171 VRGHVGVPGNEAADGLAKEGSR-KSLEDV 198 >UniRef50_A5GWJ8 Ribonuclease H n=3 Tax=Synechococcus RepID=A5GWJ8_SYNR3 Length = 247 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 65/139 (46%), Positives = 86/139 (61%), Gaps = 5/139 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALE---ALK 60 V DG+C GNPGPGG+GA+LR+ GR + +TTNNRMEL A + LE L Sbjct: 16 VAAACDGACRGNPGPGGWGALLRFSDGRVEELGGSEAQTTNNRMELSACLALLERLQQLP 75 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + TDS+Y+ G T+WI+ WK++GW+TA V N DLW+ LDAA + Sbjct: 76 RAQGLAIRTDSKYLIDGFTRWINGWKRKGWRTASGSAVLNRDLWEALDAA-RLPDVALAH 134 Query: 121 VKGHAGHPENERCDELARA 139 VKGH+G P+NERCD +A A Sbjct: 135 VKGHSGDPDNERCDAIAVA 153 >UniRef50_B2AD65 Predicted CDS Pa_4_220 n=1 Tax=Podospora anserina RepID=B2AD65_PODAN Length = 311 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEA 58 K ++TDG+ GN G G + + G + + TN R EL A + AL+ Sbjct: 152 KITMVYTDGAAPGNGKAGACGGVGVWFGADDPRNVSERLAGPLQTNQRAELTAILRALQL 211 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK- 117 + + + TDSQY +T+W +W K+GWKTA PVKN DL + + + + K Sbjct: 212 VDLDSPIEIRTDSQYSIDCVTKWYVSWVKKGWKTAGGTPVKNADLVKSIRDLMEDREAKG 271 Query: 118 ----WEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 V GH+G N++ D LA A P L++ G Sbjct: 272 TITILTKVVGHSGDYGNDQADRLAVLGAQLPALDEKG 308 >UniRef50_C1BKT9 Ribonuclease H1 n=5 Tax=Euteleostomi RepID=C1BKT9_OSMMO Length = 306 Score = 169 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALE 57 M V ++TDG C GN G I Y GR+ + R TN R EL AA ALE Sbjct: 148 MGDAVVVYTDGCCSGNGRIGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALE 207 Query: 58 ALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 KE +++L TDS++ G+T W+ NWK GW+ V N + +Q+LD G+ + Sbjct: 208 QAKEMNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLNSGGHVINKEDFQKLDKLNGEVE 267 Query: 116 IKWEWVKGHAGHPENERCDELARAAA 141 + W V GHAG+ NE D L+R A Sbjct: 268 VVWLHVPGHAGYLGNEEADRLSRVGA 293 >UniRef50_A8HXQ9 Ribonuclease H n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8HXQ9_AZOC5 Length = 186 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 2/134 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 ++ DGS L NPGP G+ ++ G +TF+ TNN+MEL AAI AL L Sbjct: 25 FVVYADGSSLQNPGPAGWAVLVIPPHGGPQTFAGSEPWATNNQMELRAAIEALNVLPMDA 84 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVK 122 ++ DS+YV +G++ W W++RGW+ + +PV N DLW+ L +++ WV+ Sbjct: 85 AGVIRCDSEYVVKGVSDWRSGWERRGWRNSKGQPVANADLWRTLYRLSDDRPGVRFAWVR 144 Query: 123 GHAGHPENERCDEL 136 GHAG P NE D L Sbjct: 145 GHAGDPGNELADML 158 >UniRef50_C2CX87 Possible ribonuclease H n=2 Tax=Bifidobacteriaceae RepID=C2CX87_GARVA Length = 350 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 12/151 (7%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP G G+ ++ + G T TN EL A + Sbjct: 15 IVVSTDGSALGNPNGSMGWAWADHTDEAGSTNEHQHAGNADAGGATNGTNQIGELCAVLE 74 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A ++ + TDSQY T WIH WKK GWK + K+PVKN DL + +D+ + + Sbjct: 75 ALRAHPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLIRAIDSEITKR 134 Query: 115 Q--IKWEWVKGHAGHPENERCDELARAAAMN 143 + +K+ WVKGHAG+ NE+ DELAR A + Sbjct: 135 EGSVKFVWVKGHAGNAGNEKVDELARTYAED 165 >UniRef50_C7NFY8 RNase HI n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFY8_KYTSD Length = 291 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 80/139 (57%), Gaps = 4/139 (2%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 + DGS LGNPGP G+ Y + + G+ TNN ELMA + L+ Sbjct: 2 ITAAADGSALGNPGPAGWAW---YVDDDCWAAGGWPHGTNNMGELMAVLDLLQQTAHLDD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 ++ + DSQY I++W WK++GWK AD KPV N+DL + LD A+ ++ +EWVKG Sbjct: 59 DLHVLCDSQYAINVISKWTPAWKRKGWKKADGKPVMNIDLVKALDEAMQGRRVTFEWVKG 118 Query: 124 HAGHPENERCDELARAAAM 142 HAGH NE DE AR AA+ Sbjct: 119 HAGHALNEAADERARNAAL 137 >UniRef50_C0QZB8 Ribonuclease H n=2 Tax=Brachyspira RepID=C0QZB8_BRAHW Length = 163 Score = 168 bits (426), Expect = 5e-41, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 2/138 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREK--TFSAGYTRTTNNRMELMAAIVALEALK 60 + I+TDG C GNPG G + AIL TTNNRME+ AAI ALE LK Sbjct: 4 DNIIIYTDGGCRGNPGLGAWAAILISEKHNLRLEIGESEDNTTNNRMEMKAAIKALERLK 63 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + L +DS Y+ G+T+WI++W+K W +DKKPV+N + W RL +H I++ Sbjct: 64 HSHSIKLHSDSAYLVNGMTKWIYSWQKNNWVKSDKKPVENKEYWLRLIELSKKHDIEFIK 123 Query: 121 VKGHAGHPENERCDELAR 138 VKGH+ + EN R DE+ Sbjct: 124 VKGHSTNKENNRADEIVN 141 >UniRef50_D2XAD4 Ribonuclease H n=1 Tax=Marseillevirus RepID=D2XAD4_9VIRU Length = 141 Score = 168 bits (426), Expect = 5e-41, Method: Composition-based stats. Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 2/140 (1%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +I+TDGSCL NPG GGYG ++ T S TTNN+ E A IVAL L E E Sbjct: 3 QIYTDGSCLKNPGKGGYGVVITRNDEVLSTLSGHMAETTNNQAEAAACIVALSWLSEPTE 62 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V + +DS+YV GIT+WI WKK GW+TA+KKPV N + W LD +H++ W WV Sbjct: 63 VEICSDSKYVVDGITKWIGGWKKNGWRTANKKPVLNKEFWLELDRLNSKHKVTWTWV-AR 121 Query: 125 AGHPENERCDELARAAAMNP 144 + H N D+LA AA Sbjct: 122 SSHEFNVMADKLANDAAKEK 141 >UniRef50_C3MAD4 Putative ribonuclease HI n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAD4_RHISN Length = 278 Score = 168 bits (426), Expect = 5e-41, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 87/161 (54%), Gaps = 14/161 (8%) Query: 5 VEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-H 62 + +FTDG+C NPGPGG+G A+ R R + G TTNNRMEL A + +E K Sbjct: 107 LHVFTDGACEPNPGPGGWGVAVYRDRAEIASDHGGNADTTNNRMELTALLKGIEVAKALG 166 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKT------ADKKPVKNVDLWQRLDAALGQ-HQ 115 V++ +DS+Y G W H WKK+ WK A + VKNV+LWQ +DAAL + Q Sbjct: 167 APVVVWSDSRYCVDGCNDWRHGWKKKEWKKAGPKASAKNQEVKNVELWQAIDAALERADQ 226 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM-----NPTLEDTGY 151 I W KGHAG NER DEL+ +P E Y Sbjct: 227 ITIRWCKGHAGIVGNERADELSNLGVASLVGVSPLREPVDY 267 >UniRef50_C9SF93 Ribonuclease H n=2 Tax=Sordariomycetes RepID=C9SF93_VERA1 Length = 328 Score = 168 bits (425), Expect = 7e-41, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALK 60 + I+TDGS L N G + + G + + TN R EL A I ALE Sbjct: 178 LAIYTDGSSLANGKVGAAAGVGVFFGVDDARNLSERLEGEPQTNQRAELTAIIRALEIAP 237 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK--- 117 + +V + TDSQY +T W W+K+ W + +PVKN DL + + + + + Sbjct: 238 DEQDVQIFTDSQYSINCVTSWYKGWQKKDWHNSKGEPVKNRDLVEEVRELIETREAEGAS 297 Query: 118 --WEWVKGHAGHPENERCDELARAAAMNPT 145 + WVKGHA + N D LA A A P Sbjct: 298 TVFTWVKGHADNVGNTAADHLAVAGARMPP 327 >UniRef50_Q46HH3 Ribonuclease H n=5 Tax=Cyanobacteria RepID=RNH_PROMT Length = 161 Score = 166 bits (422), Expect = 1e-40, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 9/159 (5%) Query: 1 MLKQ----VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVA 55 M K+ + TDG+C GNPGPGG+GA++R+ G E F TTNNRMEL AA+ Sbjct: 1 MSKEEKLAIAAATDGACSGNPGPGGWGALIRFQDGSEIEFGGNSPETTNNRMELQAALFI 60 Query: 56 LEALKE---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 LE LK + + TDS+Y+ G+ +W+ NWKK+GWKTA KPV N DLW+ LD Sbjct: 61 LEKLKNIKFAPSLTIKTDSKYLIDGMDKWMPNWKKKGWKTASGKPVLNQDLWKALDHP-E 119 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 +IK ++VKGH+G +N+R D +A A + ++ + Sbjct: 120 LPKIKLQYVKGHSGEKDNDRVDAIAVAFSKGRKIQLKDF 158 >UniRef50_D2R9R7 Ribonuclease HI n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R7_GARVA Length = 361 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 78/151 (51%), Gaps = 12/151 (7%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP G G+ + + G T TN EL A + Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHIDESGSSNEHHHTGNADAGGATNGTNQIGELCAVLE 77 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A + + +DSQY T WIH WKK GWK + +PVKN +L + +DA + + Sbjct: 78 ALRAHPGREPLTIESDSQYAINCATTWIHGWKKNGWKNSKNEPVKNAELIRAIDAEITKR 137 Query: 115 Q--IKWEWVKGHAGHPENERCDELARAAAMN 143 + +K+ WVKGHAG+ NE+ D LAR A + Sbjct: 138 EGAVKFVWVKGHAGNEGNEKVDTLARGYAED 168 >UniRef50_A4JFN6 Ribonuclease H n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JFN6_BURVG Length = 177 Score = 166 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 92/155 (59%), Gaps = 9/155 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA----LK 60 VE +TDG+C GNPGPGG+GAI + GRE F G TTNN MEL + LE+ L Sbjct: 13 VEAWTDGACSGNPGPGGWGAITQVGGREARFFGGMNPTTNNVMELFGVLFVLESTLGRLP 72 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 + + TDSQYV++G+T+W+ WK++GW+ AD K V N + WQR DAAL H+ Sbjct: 73 PGSTLSVRTDSQYVQKGVTEWLAGWKRKGWRKADGKLVLNAEWWQRTDAALIAHRAAGNT 132 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 + WV+GHAG NER D LAR + G Sbjct: 133 VNVLWVRGHAGDELNERADALARRGSNQSACLPKG 167 >UniRef50_B6JLP9 Ribonuclease H n=3 Tax=Helicobacter RepID=B6JLP9_HELP2 Length = 188 Score = 165 bits (419), Expect = 3e-40, Method: Composition-based stats. Identities = 70/140 (50%), Positives = 85/140 (60%), Gaps = 5/140 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K+++ F LGNPGPGGY AILRY+ +EK S G TTNNRMEL A AL+ LK Sbjct: 47 KKLKFFAMVLHLGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKILKRP 106 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C + L +DSQYV Q I W+ NW+K+ + VKNVDLW+ H I W+K Sbjct: 107 CHITLYSDSQYVCQAINVWLANWQKKNFSK-----VKNVDLWKEFLKVSKGHLIVAVWIK 161 Query: 123 GHAGHPENERCDELARAAAM 142 GH GH ENERCD LA+ A Sbjct: 162 GHNGHAENERCDNLAKLEAQ 181 >UniRef50_O60930 Ribonuclease H1 n=26 Tax=Bilateria RepID=RNH1_HUMAN Length = 286 Score = 165 bits (419), Expect = 3e-40, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 69/148 (46%), Gaps = 5/148 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALE 57 M V ++TDG C N I Y G + G R TN R E+ AA A+E Sbjct: 136 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIE 195 Query: 58 ALKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 K +++L TDS + GIT W+ WKK GWKT+ K V N + + L+ Sbjct: 196 QAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD 255 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMN 143 I+W V GH+G NE D LAR A Sbjct: 256 IQWMHVPGHSGFIGNEEADRLAREGAKQ 283 >UniRef50_B8HCV8 Ribonuclease H n=6 Tax=Actinobacteria (class) RepID=B8HCV8_ARTCA Length = 358 Score = 164 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 55/128 (42%), Positives = 73/128 (57%), Gaps = 5/128 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK--EH 62 + DGS LGNPGP G+ Y E + G+ TNN+ ELMA + L A Sbjct: 3 ITAAADGSALGNPGPAGWAW---YVNDECWRAGGWPHGTNNQGELMAVLDLLRATAHVRQ 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 ++ + DSQYV IT+W+ WK++GW+ AD KPV NV+L + LD L + +EWVK Sbjct: 60 EDLHILCDSQYVINSITKWMPGWKRKGWRKADGKPVLNVELLKELDRELAGRKYTFEWVK 119 Query: 123 GHAGHPEN 130 GHAGH N Sbjct: 120 GHAGHDLN 127 >UniRef50_A8N3A5 Predicted protein n=2 Tax=Eukaryota RepID=A8N3A5_COPC7 Length = 502 Score = 164 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALK- 60 + ++TDG+ GN PG I + G + + TNNR EL+A + LE Sbjct: 97 LVVYTDGASKGNGQPGSVAGIGVWWGHDDPRNIAERCPGDQTNNRAELLAILRVLETAPI 156 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----Q 115 +++ +DSQY + W+ W KRGWK A +PVKN + + + A L + + Sbjct: 157 SKTPLLIKSDSQYSMNCLQVWLPGWVKRGWKNAKGEPVKNAPIIRLISAHLDRRAQLGQK 216 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 ++ +V+GH+G+ N+ D A A + P E+ + E Sbjct: 217 VRMVYVEGHSGNVGNDGADAQANAGCLLPPTEERDWDAE 255 >UniRef50_B2AS39 Predicted CDS Pa_1_22230 n=2 Tax=Sordariomycetes RepID=B2AS39_PODAN Length = 334 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 9/152 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALK 60 + ++TDG+ GN I Y G + TN R ELMA ++AL+A Sbjct: 175 IVVYTDGAAPGNGKRHAAAGIGVYFGAGDPRNISKRLPGPLQTNQRAELMAILLALQAFD 234 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 V + TDSQY +T+W W + GW +A VKN D+ + + A + + Sbjct: 235 PAESVEIRTDSQYSIDCVTKWYRGWVRNGWLSAKGAAVKNDDIIKPIRALIDERDAVGAR 294 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 K+ V GH+G P N+ D LA A P +E Sbjct: 295 TKFTKVAGHSGDPGNDAADRLAVLGAQLPVVE 326 >UniRef50_UPI0001C31642 Ribonuclease H n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31642 Length = 175 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 9/142 (6%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILR--YRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + ++TDG+C GNPGPGG+ AI+ G +S G TTNNRME AA+ + +L Sbjct: 25 EALVWTDGACKGNPGPGGWAAIVVPADGGEPLEYSGGDPATTNNRMEYTAALEGMRSLPA 84 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEW 120 V + TDSQ + +T+WI WK++GWKTA PVKN DL LD+ +G+H+ ++W W Sbjct: 85 GSRVCIVTDSQLMLNSMTRWITGWKRKGWKTASGDPVKNQDLVMALDSEVGRHETVRWHW 144 Query: 121 VKGH---AGH---PENERCDEL 136 V+GH GH N+R D L Sbjct: 145 VRGHETGDGHAHKALNDRADRL 166 >UniRef50_C7M9U7 RNase HI n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7M9U7_BRAFD Length = 336 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--KEH 62 + DGS LGNPGP G+ + + G+ TNN EL A + LEA Sbjct: 3 ITAAADGSALGNPGPAGWAWYI---DDNSWRAGGWPHGTNNMGELKAVLDLLEATAVDAD 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 +++ DSQYV +T+W+ WK++GW+ D KPV NV+L + +D AL +++EWVK Sbjct: 60 QHLLILCDSQYVINSVTKWMPGWKRKGWRKKDGKPVLNVELLKDIDRALAGRSVEFEWVK 119 Query: 123 GHAGHPENE 131 GH+GH NE Sbjct: 120 GHSGHAMNE 128 >UniRef50_Q7S4S2 Predicted protein n=2 Tax=Sordariales RepID=Q7S4S2_NEUCR Length = 327 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 59/152 (38%), Gaps = 9/152 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYR----GREKTFSAGYTRTTNNRMELMAAIVALE 57 K V I+TDGS GN G + Y + TN R EL A + ALE Sbjct: 175 SKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRALE 234 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 A+ + L TDSQY +T W W K W+ + V N DL + + Sbjct: 235 AIPDTQNCELRTDSQYTINCVTSWYKKWMKNEWRNTKGEEVSNQDLIVAIRKKIDTRDRK 294 Query: 116 ---IKWEWVKGHAGHPENERCDELARAAAMNP 144 K+ WVKGH N D LA A Sbjct: 295 AAETKFVWVKGHGTDEGNIAADMLAVKGATMM 326 >UniRef50_UPI0001757D40 PREDICTED: similar to GA21286-PA n=1 Tax=Tribolium castaneum RepID=UPI0001757D40 Length = 231 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V ++TDG+C N G I + G + + TNN E+ A I A++ ++ Sbjct: 84 VTVYTDGACENNGREGAKAGIGVWFGDNHPLNVSKPVKGKATNNAAEIQACICAVQIARD 143 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKK-PVKNVDLWQRLDAALGQHQIKW 118 + ++ + TDSQ+ +T+WI +WKK WK + K PVKN +Q LD ++W Sbjct: 144 NGIKKLQIITDSQFTINAMTKWIKSWKKNNWKLSSSKNPVKNKTDFQELDKLCEGLDVQW 203 Query: 119 EWVKGHAGHPENERCDELARAAAM 142 + V GH+G NE D LAR A Sbjct: 204 QHVAGHSGIKGNECADMLAREGAK 227 >UniRef50_A8QFV5 RNase H family protein n=1 Tax=Brugia malayi RepID=A8QFV5_BRUMA Length = 212 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 6/143 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEAL-- 59 ++TDG+C N G I Y G + + TNNR EL A I A++ Sbjct: 63 IVYTDGACSFNGHVGATAGIGVYWGEQHVDNISEPLLRGPPTNNRAELEAVIRAVQMAIQ 122 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + + ++I+ TDS + Q + WIH W+K GWKT++ VKN DL L+ L +++E Sbjct: 123 RRYHQLIVRTDSNLLIQTMNSWIHGWQKNGWKTSNGTTVKNQDLIIELNGLLKNINVRFE 182 Query: 120 WVKGHAGHPENERCDELARAAAM 142 V GH G NE+ D+LAR A+ Sbjct: 183 HVAGHVGIYGNEKADQLAREGAL 205 >UniRef50_Q66LX4 Ribonuclease H n=4 Tax=Siphoviridae RepID=Q66LX4_BPT5 Length = 162 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 10/159 (6%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREK--TFSAGYTRTTNNRMELMAAIVALEA 58 ++ ++TDG+C NPGPG +G I+ ++ + S +TTNN MEL A + AL Sbjct: 4 IMSVFHVYTDGACKSNPGPGAWGFIVYDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRW 63 Query: 59 L--KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 K++ +++ TDS Y + G+ W+ +W+++GWK AD + N++LWQ Q+ Sbjct: 64 SVKKDNRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYIN 123 Query: 115 ----QIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT 149 + VKGH+G NE D L + + Sbjct: 124 FHNTNPTFIKVKGHSGISGNEAVDALCNTVITEAEMAEM 162 >UniRef50_UPI000180BF60 PREDICTED: similar to predicted protein n=1 Tax=Ciona intestinalis RepID=UPI000180BF60 Length = 282 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALKE- 61 ++TDG+C N G + G + + TN R E+ A A++ + Sbjct: 133 VVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDV 192 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 H ++++ TDS++V IT+W+ W ++GW AD KPV + +Q + + + +K+E Sbjct: 193 GHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKINVKFEH 252 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTG 150 V GH G+ NE D+LA A P L + G Sbjct: 253 VFGHRGNYGNEMADKLAVQGATMPYLLNIG 282 >UniRef50_A5FZ26 Ribonuclease H n=11 Tax=Bacteria RepID=RNH_ACICJ Length = 160 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 76/136 (55%), Positives = 92/136 (67%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+TDG C NPG GG+ A+LR+ E+ S TTNNRMEL AA ALEALK C Sbjct: 9 VEIWTDGGCKPNPGAGGWAAVLRFGAAEREMSGAERETTNNRMELTAAAAALEALKRPCR 68 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L TDS+Y+R GIT+W W +R W+ A PV N +LWQR+ AA H+I+W WV+GH Sbjct: 69 VKLHTDSEYLRNGITRWHTGWVRRNWRNAQGDPVANYELWQRVLAAAKPHEIEWIWVRGH 128 Query: 125 AGHPENERCDELARAA 140 AG P NER D+LA AA Sbjct: 129 AGDPMNERVDQLATAA 144 >UniRef50_B8DW51 Ribonuclease H n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DW51_BIFA0 Length = 329 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGREKTFS-------AGYTRTTNNRMELMAAIVAL 56 + + TDGS L NP GP G+ G + G T TN EL A + AL Sbjct: 3 ITVSTDGSALRNPNGPMGWAWADHTDGARDEHAHAGDCAAGGATNGTNQIGELCAVLEAL 62 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 A +++ +DSQY ++W+ WKK GWK + ++PVKN + + +DA + + Sbjct: 63 RAHPGSEPLVIESDSQYAINCSSKWVFGWKKNGWKNSKQEPVKNAPIIKAIDAEISKRAG 122 Query: 115 QIKWEWVKGHAGHPENERCDELAR-------AAAMNPTLEDTGYQV 153 ++ + WVKGHAG+ NE+ D+LAR + A L G+Q Sbjct: 123 KVSFRWVKGHAGNAGNEKVDDLARGFAGDCESGAQEGYLPKEGWQA 168 >UniRef50_C1B0N1 Ribonuclease HI n=3 Tax=Nocardiaceae RepID=C1B0N1_RHOOB Length = 178 Score = 161 bits (408), Expect = 6e-39, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Query: 5 VEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G+ + + S G TN EL A + A+ A Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSQSGGEPSGTNQIAELRALLEAITAHPGAD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ WK++GWKTA PVKN+ L Q +D A+ + +++ WV Sbjct: 59 PLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAIAERPGPVRFRWV 118 Query: 122 KGHAGHPENERCDELARAAAM 142 +GH G+ NE D LA AA Sbjct: 119 RGHVGNHYNEMADVLAGEAAR 139 >UniRef50_Q1DA37 Ribonuclease H n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DA37_MYXXD Length = 255 Score = 161 bits (407), Expect = 7e-39, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 81/151 (53%), Gaps = 11/151 (7%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + +F DG+C GNPGPGG+G+I+ G TTNNRMEL A AL L+ Sbjct: 4 RPTLVFADGACSGNPGPGGWGSIIVTPDGLVTELGGHEPETTNNRMELTAVGKALRHLER 63 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 + + TDS YV QG T+W W +RGWKTA+ V N W+RL A L Q + Sbjct: 64 APGPIHIHTDSTYVIQGATKWAFGWSRRGWKTAEGGEVANAIYWKRLMALLAQRKESHAA 123 Query: 116 ----IKWEWVKGHAGHPENERCDELARAAAM 142 + W +++GH G P NER D +A A + Sbjct: 124 EAAAVAWFYIRGHVGVPGNERVDAIAVAYSK 154 >UniRef50_A6RRU3 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6RRU3_BOTFB Length = 325 Score = 161 bits (407), Expect = 8e-39, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 9/150 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 ++++TDGS GN G + G + TN R EL AA+ ALE + Sbjct: 175 IKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRALETVP 234 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----Q 115 + + TDS Y T W NW K GWKT+ KPV N DL +++ A + + Q Sbjct: 235 LDKNIEIITDSNYTINCATVWYKNWGKNGWKTSTGKPVMNEDLVKQIRALIDKRTKNKAQ 294 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPT 145 WVKGH +P N D LA AM Sbjct: 295 TNLTWVKGHDENPGNVAADRLAVKGAMEKN 324 >UniRef50_Q86MG7 Rnase h protein 1.0, isoform c, partially confirmed by transcript evidence n=4 Tax=Caenorhabditis RepID=Q86MG7_CAEEL Length = 251 Score = 161 bits (407), Expect = 8e-39, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 5/142 (3%) Query: 6 EIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--K 60 ++TDG+C N G+G + F Y TNNR EL+A A+E K Sbjct: 104 VVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEK 163 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 +V++ TDS + Q + WIH WK++GWKT+ V N D+ ++D + ++K+ Sbjct: 164 RLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLH 223 Query: 121 VKGHAGHPENERCDELARAAAM 142 V+GHAG NE+ DELAR A Sbjct: 224 VRGHAGIDGNEKADELARKGAQ 245 >UniRef50_D2NR13 Ribonuclease HI n=2 Tax=Rothia mucilaginosa RepID=D2NR13_9MICC Length = 472 Score = 161 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--K 60 +++ DGS LGNPGP G+ + + S G+ TNN EL A + EA + Sbjct: 5 QEIIAAADGSALGNPGPAGWAWYI---DDDHWASGGWAHGTNNMGELKAVLDLFEATASR 61 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ + DSQYV +T+W+ WKK+GWK +D KPV N DL + LD L ++ W Sbjct: 62 PEAKLRVYCDSQYVINSLTKWMPGWKKKGWKKSDGKPVLNRDLLEALDQVLTGRDYEFIW 121 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGHAGH NE+ D LA AA Sbjct: 122 VKGHAGHELNEKADSLANGAAR 143 >UniRef50_Q9UST8 Ribonuclease H n=1 Tax=Schizosaccharomyces pombe RepID=RNH1_SCHPO Length = 264 Score = 161 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALKE 61 ++ DGS L N G + G + + TNNR EL A I+ALE Sbjct: 125 VVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALENT-- 182 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 ++ + +DS Y + +T W+ WKK +KT++ +PVKN+DL R + + E+V Sbjct: 183 SGDLTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSDRNVSLEYV 242 Query: 122 KGHAGHPENERCDELARAAAMN 143 KGH+ N++ D LAR A Sbjct: 243 KGHSTDYGNQQADMLARRGASE 264 >UniRef50_D1YER5 Ribonuclease HI n=4 Tax=Actinomycetales RepID=D1YER5_PROAC Length = 300 Score = 161 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 + DGS L NPGP G+ + + + G+ R TNN EL A + L A ++ + Sbjct: 2 IVAAADGSSLDNPGPAGWAWYI---DDDTWAAGGWPRGTNNMGELKAVLDVLRATRDANE 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DSQY T+WI WK+ GW+ D KPV N DL + +D L + +EWVKG Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118 Query: 124 HAGHPENE 131 HAGH NE Sbjct: 119 HAGHAMNE 126 >UniRef50_UPI000186D39C asparagine-rich protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D39C Length = 710 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V+++TDG+CL N I + G + TNN E+ AA VA+E + Sbjct: 552 VQVYTDGTCLNNGKKEARAGIGIWFGDSHPLNVSEPLVGSPTNNCAEIQAARVAMELAIK 611 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 ++ + TDS ++ T+WI WKK GW D VKN + ++LD + ++KWE Sbjct: 612 AGIKKLKIFTDSSFLINCATKWIRRWKKNGWTLVDGGKVKNREELEKLDLVAQKLKVKWE 671 Query: 120 WVKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 V+GH+G NE D LA A A+ G + + Sbjct: 672 KVEGHSGIKGNEMADRLANAGALKFKKSIVGKKKQ 706 >UniRef50_B0CND0 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CND0_LACBS Length = 561 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 9/155 (5%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALKEH 62 +++DG+C GN G + + G + TNNR EL+A LE+ Sbjct: 94 VVYSDGACKGNGKVGSVAGVGVWWGHNDPRNIAERCPGDQTNNRAELIAIARVLESTPRS 153 Query: 63 CE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----QI 116 + +++ TDSQY WI NW + GW + K+PVKN + + + A L ++ Sbjct: 154 KKPLLIKTDSQYSINCFQNWISNWSRNGWVNSSKEPVKNAGIIRYISALLDLRAKSGQKV 213 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 + ++VKGH+G N+ D A P + + Sbjct: 214 RLQYVKGHSGDTGNDGADAQANQGTTQPPRGELDW 248 >UniRef50_D1BU35 Ribonuclease H n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BU35_XYLCX Length = 191 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 5/134 (3%) Query: 5 VEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G+ I GR S G TN EL A + A+EA Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWIDHEGGRFD--SGGAASGTNQVAELTAVLRAVEAHPGDE 59 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ WK++GW+TA PVKN++L Q +DAA+ +++ WV Sbjct: 60 PLLIESDSQYAIRCSSEWLEGWKRKGWRTASGSPVKNLELVQAIDAAIAGRGGPVRFRWV 119 Query: 122 KGHAGHPENERCDE 135 +GH G+P NER DE Sbjct: 120 RGHVGNPFNERADE 133 >UniRef50_Q83HK9 Ribonuclease H n=3 Tax=Actinomycetales RepID=RNH_TROW8 Length = 161 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 ++ TDGS L NPGP G+ Y S G+ TNN EL A L A + Sbjct: 3 NNEIIAATDGSSLANPGPSGWAW---YVDENTWDSGGWDIATNNIAELTAVRELLIATRH 59 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 +++ +DS+YV +T+W+++WK R W+ AD KPV N ++ Q +D+ + I+ W Sbjct: 60 TDRPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSW 119 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDT 149 V H GHP NE D LAR AA N + Sbjct: 120 VNAHTGHPLNEAADSLARQAANNFSTRSA 148 >UniRef50_A8PYJ8 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PYJ8_MALGO Length = 304 Score = 159 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 9/152 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY------TRTTNNRMELMAAIVAL 56 ++ ++TDGS GN G Y TNNR EL A ++A+ Sbjct: 153 DEIIVYTDGSSHGNGKRGSIAGYGVYWADPLYHRQNVAARLPGPVQTNNRAELTAILIAI 212 Query: 57 EALKEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 L + + + TDS+Y Q I +WI W+ WKT+ KK V+N DL++ + A+ + Sbjct: 213 RTLPDPSRPLHIYTDSRYAIQAINKWIVQWRANNWKTSTKKDVENRDLFEAIQDAINACR 272 Query: 116 IK--WEWVKGHAGHPENERCDELARAAAMNPT 145 + +V+GHAGH N D+LA A + T Sbjct: 273 YRPVLTYVRGHAGHYGNVMADKLANEGAASGT 304 >UniRef50_D0WKT5 Ribonuclease HI n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WKT5_9ACTO Length = 292 Score = 159 bits (403), Expect = 2e-38, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 + TDG+C GNPGPGG+ + + G G TTNN MEL A + ALE + ++ Sbjct: 152 IVATDGACSGNPGPGGWAWVEQVTGERDC--GGAAHTTNNAMELTALVRALEHVGPQPDL 209 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--IKWEWVKG 123 ++ DSQY + +T W W+++GW+ +D PV N DL +RL Q + EWVKG Sbjct: 210 LMRIDSQYAIKAMTVWAKAWRRKGWRKSDGAPVANRDLVERLLELYEGRQGRTEVEWVKG 269 Query: 124 HAGHPENERCDEL 136 H+G NE D + Sbjct: 270 HSGDAANELVDSM 282 >UniRef50_C0ZQX0 Ribonuclease HI n=2 Tax=Rhodococcus erythropolis RepID=C0ZQX0_RHOE4 Length = 183 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Query: 5 VEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G+ + + S G TN EL A A+ A Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSMSGGEASGTNQIAELRALFEAVVAHPGAD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ +WK++GWKTA VKN++L Q +D A+ +++ WV Sbjct: 59 PLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVRFRWV 118 Query: 122 KGHAGHPENERCDELARAAAM 142 +GH G+ NE D+LA AA Sbjct: 119 RGHVGNHYNEMADKLAGEAAR 139 >UniRef50_C7MN72 RNase HI n=2 Tax=Bacteria RepID=C7MN72_CRYCD Length = 150 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 79/145 (54%), Gaps = 5/145 (3%) Query: 1 MLKQVEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 M ++V+++ DG C GN G GG+G+ L + K G TTNN+MEL I L Sbjct: 1 MSQRVQLYCDGGCRGNQGKVNIGGWGSYLIWGSHTKELFGGERNTTNNKMELTGCIEGLR 60 Query: 58 ALKEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQ 115 A+K V + DS YV GI+ WI+ W K+ W + K+PV N DLW L A + + Sbjct: 61 AIKNKSVGVDVYLDSAYVYNGISTWIYGWMKKNWVNSKKEPVANKDLWLELLAEREKFND 120 Query: 116 IKWEWVKGHAGHPENERCDELARAA 140 I + VKGHA + N + DELA A Sbjct: 121 ITFNKVKGHADNVGNIKADELANRA 145 >UniRef50_B7KMH6 Ribonuclease H n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMH6_CYAP7 Length = 2805 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 75/146 (51%), Gaps = 18/146 (12%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAIL-RYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + ++TDGS LGNPG GG+ ++ + G+ S T TTNNRMEL A I ++ +KE Sbjct: 2186 PPITLYTDGSSLGNPGSGGWAYVICDHEGQRTANSGAVTDTTNNRMELTAVIEGIKTVKE 2245 Query: 62 H----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 ++ + +DSQYV + I WK + KN DLW + + Sbjct: 2246 TYKDISDIHVVSDSQYVLKSIN---GEWKNK----------KNTDLWDEFNKISQNLNLT 2292 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 EWVKGH GH NE CD LA +AA Sbjct: 2293 TEWVKGHNGHELNELCDRLANSAAKE 2318 Score = 46.7 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 11/139 (7%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK-- 60 +Q+ ++T G+ N GG +L + ++ G T + ++L A + LE LK Sbjct: 2412 EQITLYTYGTVDENNKFGGLAFVLESPEFREEWAIGTIDQTEDYVKLRAIVSGLEKLKGL 2471 Query: 61 -------EHCEVILSTDSQYVRQGITQWIHNWKKRGWKT--ADKKPVKNVDLWQRLDAAL 111 + +V + +DS + IT N + + +K +D + V N Sbjct: 2472 KYDHHNPQKIDVKIVSDSTSILNNITGKPQNTEDKEFKNLISDFQKVSNYFNITPQLLTS 2531 Query: 112 GQHQIKWEWVKGHAGHPEN 130 + I +VK A N Sbjct: 2532 PEGNISATYVKNTAHQKMN 2550 >UniRef50_A2SIU3 RNase HI n=2 Tax=Proteobacteria RepID=A2SIU3_METPP Length = 150 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 3/136 (2%) Query: 8 FTDGSCLG-NPGPGGYGAILRYRG--REKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +TDG+C NPGP +GA+L E TN EL AAI L + Sbjct: 6 YTDGACAPSNPGPAAWGAVLIAPDGRTETDHFGFIGHGTNQIAELTAAIEGLTRVPAGAL 65 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L +DSQYV +G+++W W+++G++ + +PV N+ LW++L A ++ WV+GH Sbjct: 66 VELVSDSQYVLKGLSEWRAGWERKGYRNSKGEPVANLGLWKQLFALADARKVSTRWVRGH 125 Query: 125 AGHPENERCDELARAA 140 G P NER D LA A Sbjct: 126 NGDPLNERADALANKA 141 >UniRef50_UPI000050F716 ribonuclease H n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F716 Length = 223 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 53/128 (41%), Positives = 78/128 (60%), Gaps = 4/128 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 + DGS LGNPGP G+ Y + + G+ +TNNR ELMA + L + + E Sbjct: 3 IIAAADGSALGNPGPAGWAW---YVDDDCWHAGGWKESTNNRGELMAVLDLLNSTADAGE 59 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DS+YV +T+W+ WK++GWK AD K V N DL ++LD+AL ++++EWVKG Sbjct: 60 DLKVFCDSKYVINALTKWMPGWKRKGWKKADGKDVLNKDLLEQLDSALKGREVEFEWVKG 119 Query: 124 HAGHPENE 131 H+ H NE Sbjct: 120 HSNHAMNE 127 >UniRef50_Q0TWR7 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0TWR7_PHANO Length = 319 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 9/147 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 + I TDGS N P + Y G + G + TN R ELMA +ALE Sbjct: 20 LVINTDGSSFRNGKPDAIAGVGVYFGPNDKRNTGQPLGPGKQTNQRAELMAVKIALEKAP 79 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 V++S+DS+Y +T W+ WK+R WK + +N +L Q + + Q Sbjct: 80 IDQVVLISSDSRYAINCLTDWLPLWKQRSWKKVEGIFKENTELIQSIVKRMETRQKFNAL 139 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 + WVKGH+G P NE D+LA + Sbjct: 140 TYFWWVKGHSGDPGNEFADKLAVKGSK 166 >UniRef50_A0JT09 Ribonuclease H n=5 Tax=Actinomycetales RepID=A0JT09_ARTS2 Length = 319 Score = 158 bits (399), Expect = 6e-38, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--H 62 + DGS LGNPGP G+ Y + + G+ TNN+ ELMA + Sbjct: 3 ITAAADGSALGNPGPAGWAW---YVNDDCWRAGGWPHGTNNQGELMAVLDLFRCTAHLPG 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 E+ + DSQYV +T+W+ WK++GW+ AD KPV NV++ + +D AL + ++EWV+ Sbjct: 60 EELHILCDSQYVINSVTKWMPGWKRKGWRKADGKPVLNVEILREIDQALSGRKYRFEWVR 119 Query: 123 GHAGHPENE 131 GHAGH NE Sbjct: 120 GHAGHDLNE 128 >UniRef50_B8CNS8 Ribonuclease H n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CNS8_SHEPW Length = 183 Score = 157 bits (398), Expect = 8e-38, Method: Composition-based stats. Identities = 69/106 (65%), Positives = 85/106 (80%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 LKQ+ IFTDGSCLGNPGPGGYG +++Y+ + G+ TTNNRME++A IVALEALK Sbjct: 25 LKQISIFTDGSCLGNPGPGGYGIVMKYKKHTHELAGGFALTTNNRMEMLAPIVALEALKV 84 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 C+VIL++DSQY+RQGITQWIH WK+ GW T+ K+ VKNVDLW L Sbjct: 85 PCQVILTSDSQYMRQGITQWIHGWKRNGWVTSTKQAVKNVDLWHVL 130 >UniRef50_Q5KPB0 Ribonuclease H, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KPB0_CRYNE Length = 321 Score = 157 bits (398), Expect = 9e-38, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 12/156 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-------AGYTRTTNNRMELMAAIVALE 57 + ++TDGS GN G + G S TNNR EL+A I A+E Sbjct: 120 LVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRAIE 179 Query: 58 ALK-EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 + + DSQY +T W+ W ++ + K+ V N DL + L L + Sbjct: 180 RCPFPDIPLEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRRRGA 239 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 ++K+++V H+G NE D LAR P + D Sbjct: 240 AGRVKFKYVPAHSGVEGNEAADRLARTGGALPFVSD 275 >UniRef50_Q58E11 MGC115038 protein n=2 Tax=Xenopus RepID=Q58E11_XENLA Length = 204 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 5/144 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEAL 59 + E++TDG C N G G I Y G + + R TN R E+ AA A + Sbjct: 59 RSAEVYTDGCCSRNGQYGANGGIGVYWGPNDSRNVSARLEGRQTNQRAEIEAAYTAAKQA 118 Query: 60 KEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + + ++TDS++ G+T+W+ WK+ WKT D + V N +Q+LD A +K Sbjct: 119 RNDNVTHLEINTDSKFTIDGMTKWVPRWKENNWKTIDGRDVINKQDFQKLDKACENMDVK 178 Query: 118 WEWVKGHAGHPENERCDELARAAA 141 W +V GH+G+ NE D+LA+A + Sbjct: 179 WNYVPGHSGNAGNEMADQLAKAGS 202 >UniRef50_D0JBH5 Ribonuclease HI n=3 Tax=Flavobacteria RepID=D0JBH5_BLASB Length = 160 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 12/161 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILR----YRGREKTFSAGYTRTTNNRMELMAAIVAL 56 M +++ I+TDGS GNPGPGGYG + K S G+ TTNNRMEL+A IV L Sbjct: 1 MNQKIHIYTDGSSKGNPGPGGYGIFIETTIGNSYNRKIISEGFRYTTNNRMELLAVIVGL 60 Query: 57 EAL-KEHCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 E + K +++ TDS+Y+ I WIH WKK + KNVDLW+R ++ Sbjct: 61 EKIEKRKQNIVVFTDSKYIVNTIQNNWIHQWKKNNFFQK-----KNVDLWKRFLKIYNKN 115 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMNPTLE-DTGYQVE 154 I ++W+K H H N+ CD L+ A+ L+ D Y+ + Sbjct: 116 IIDFQWIKSHNNHYINDYCDRLSVEASKRKILKIDYIYEKQ 156 >UniRef50_C1BPL6 Ribonuclease H1 n=1 Tax=Caligus rogercresseyi RepID=C1BPL6_9MAXI Length = 257 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 V++FTDG+C N G I Y G + TNN E+ A A++++K Sbjct: 114 VKVFTDGACSNNGRRGAVAGIGAYFGPGSPKNISEPVSGDHQTNNSAEIQAISQAIQSVK 173 Query: 61 EH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 +V++ TDS++ + W+ WK+ GWK + V N + +LD +K+ Sbjct: 174 NEGRTKVVIYTDSKFAINSVELWLEGWKQNGWKKSSGGDVINKADFIQLDDIRKGMSVKF 233 Query: 119 EWVKGHAGHPENERCDELARAAAM 142 V+GH G NE D+LAR A Sbjct: 234 IHVRGHQGIHGNEMADQLAREGAQ 257 >UniRef50_O44114 Ribonuclease H1 n=3 Tax=Drosophila melanogaster RepID=O44114_DROME Length = 333 Score = 155 bits (392), Expect = 4e-37, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 7/145 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE 61 V ++TDGSC+GN G Y G+ +A R TNN E+ AAI A++ + Sbjct: 182 VIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALD 241 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--IK 117 ++ +STDSQ++ IT W+ WKKR WK + +PVKNV ++ LD L + +K Sbjct: 242 LGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQDNNITVK 301 Query: 118 WEWVKGHAGHPENERCDELARAAAM 142 W +V+ H G NE D+LAR + Sbjct: 302 WNYVEAHKGIEGNEMADKLARQGSA 326 >UniRef50_A3W3Z9 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Roseovarius sp. 217 RepID=A3W3Z9_9RHOB Length = 161 Score = 154 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%) Query: 6 EIFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +TDGSC NPGPGG L G+ S TTNN+ E+ A I AL A+ E Sbjct: 15 VAYTDGSCKDNPGPGGCAFRLYAPDGQIIEKSRQSLETTNNKAEMWAVIDALTAIPEDAP 74 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V++ DS Y++ GI Q + W R W+ + + V+N +LW+++ A + ++ + +K H Sbjct: 75 VLVCLDSGYIKDGIEQHLEGWLSRDWRKTNGQEVRNRELWEKIIALMATREVTFHKIKAH 134 Query: 125 AGHPENERCDELARAAAM 142 +G P+NE D +A AA Sbjct: 135 SGDPDNEHVDAMAGKAAD 152 >UniRef50_B2GFP5 Ribonuclease HI n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GFP5_KOCRD Length = 371 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 61/140 (43%), Positives = 79/140 (56%), Gaps = 5/140 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK--EH 62 + DGS LGNPGP G+ + + G+ TNN EL A + LEA + Sbjct: 3 IIASADGSALGNPGPAGWAWYI---DPTSWRAGGWAHGTNNMGELTAVLDLLEATRHRRD 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + + DSQYV +T+W+ WKK+GWK D KPV NVD+ + LD L ++ +EWVK Sbjct: 60 EALTVYCDSQYVINSVTKWMPGWKKKGWKKRDGKPVLNVDIMKALDRELSGRKVTFEWVK 119 Query: 123 GHAGHPENERCDELARAAAM 142 GHAGH NE DE ARA AM Sbjct: 120 GHAGHELNEAADERARAMAM 139 >UniRef50_Q9X7R6 Ribonuclease HI n=8 Tax=Actinomycetales RepID=RNH_STRCO Length = 231 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGRE--KTFSAGYTRTTNNRMELMAAIVALEA 58 M ++ DG+ GNPGP G+ ++ + + + TNN EL A L + Sbjct: 1 MRERAVAACDGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNNIAELTALERLLAS 60 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + + DSQY + +T W+ WK+ GWKTA KPV N +L R+D L +++ Sbjct: 61 TDPDVPLEVRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANRELVVRIDELLDGRSVEF 120 Query: 119 EWVKGH--AGHPENERCDELARAAA 141 +V H G N+ D A AA Sbjct: 121 RYVPAHQVDGDRLNDFADRAASQAA 145 >UniRef50_Q4P0S4 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P0S4_USTMA Length = 1122 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 6 EIFTDGSCLGNPG---PGGYGAILRY---RGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 ++ DGS +GN G+G ++ + TNNR ELMA I A++ Sbjct: 883 TVYCDGSSIGNGRTTARAGWGVFFEDPELHHLNESRRLPGDKQTNNRAELMALIRAVQLC 942 Query: 60 KEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QI 116 +++ TDS+Y Q +T+W+ W++ G+KT V+N DL LD L + Sbjct: 943 PNDGRQLLIMTDSKYSMQTVTEWLPKWRQNGFKTLAGADVQNQDLIVELDKQLSGRHPRP 1002 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 K E VK H G NE D +A+ A P + + Sbjct: 1003 KLEHVKAHVGIHGNEIVDRMAKYGASLPRDDSSD 1036 >UniRef50_B4UMK8 Ribonuclease H n=4 Tax=Anaeromyxobacter RepID=RNH_ANASK Length = 183 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 87/147 (59%), Gaps = 8/147 (5%) Query: 4 QVEIFTDGSCLGNPG-PGGYGAILRYR-------GREKTFSAGYTRTTNNRMELMAAIVA 55 + F+DGS L NPG PGG G ++ R G + G TNNRMEL A + A Sbjct: 5 RFIAFSDGSALVNPGGPGGTGFVVLDRARPAYRFGGTRWVEDGPNAVTNNRMELRAVLEA 64 Query: 56 LEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 LE L +V + +DS+YV +++WIH W+K+GW+TA +PV N DL + LDA Sbjct: 65 LEGLPGGEQVEVISDSRYVVDALSRWIHGWRKKGWRTASGEPVLNRDLIEALDARASALS 124 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 +++ WV+GH GH NE D+LA+AAA Sbjct: 125 VRYTWVRGHDGHAVNEVVDQLAQAAAR 151 >UniRef50_UPI0001925315 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925315 Length = 255 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 6/143 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALKE 61 +++DG CL N G + Y G + + TN + EL+AA ALE E Sbjct: 110 VVYSDGCCLSNGSNFAVGGVGVYWGPYHPKNVSEYLDVEQPTNQKAELVAACRALETAIE 169 Query: 62 H--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 EV L TDS Y + +T+WI NW+ GWK + V N + RL + + W Sbjct: 170 MNLPEVELRTDSMYTIKAMTEWIQNWESNGWKNSSGGNVVNKEEMLRLSELCAKISVTWV 229 Query: 120 WVKGHAGHPENERCDELARAAAM 142 + GH G NE+ D+LA A Sbjct: 230 HIPGHKGVYGNEQADQLANQGAQ 252 >UniRef50_B3S3Z5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Z5_TRIAD Length = 173 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 6 EIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++ DG C N G G Y + TN R EL+AA ALE+ +H Sbjct: 29 IVYCDGCCFNNGFQNARAGIGIYWSYPNLSSVSERLSGKQTNQRAELVAACKALESASDH 88 Query: 63 --CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + TDS Y +T WI+ WK+ WKT+ VKN + +LD Q ++KW Sbjct: 89 NLETIEIRTDSMYTINVVTNWINKWKRNEWKTSSGDEVKNKEDIVKLDHLNSQLRVKWTH 148 Query: 121 VKGHAGHPENERCDELARAAAM 142 ++ HAG NE D+LA+A A Sbjct: 149 IRSHAGDVGNEMADKLAKAGAQ 170 >UniRef50_UPI000185C12F ribonuclease H n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C12F Length = 301 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 5/130 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61 + DGS L NPGP G+ + + G+ TNNR EL A L A Sbjct: 2 NITAAVDGSALHNPGPAGWCWYI---DDSCWAAGGWKEGTNNRGELTALAELLRATAHIP 58 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + + DSQYV +T+W+ WK++GWK D KPV NVD+ Q +D L I EWV Sbjct: 59 DEPLFVLCDSQYVINSVTKWMPGWKRKGWKKRDGKPVLNVDILQDIDQLLVGRNIHLEWV 118 Query: 122 KGHAGHPENE 131 KGH+GH NE Sbjct: 119 KGHSGHDMNE 128 >UniRef50_A6QCI9 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_SULNB Length = 147 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 72/142 (50%), Positives = 91/142 (64%), Gaps = 5/142 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 KQ+ +++DGS LGNPGPGGYG IL Y+G K + G TTNNRMEL I L+ LKE Sbjct: 6 RKQITLYSDGSSLGNPGPGGYGGILEYKGSRKEYFGGEEETTNNRMELRGVIEGLKLLKE 65 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V + +DS YV + I +W+ +W +R +K VKNVDLW+ A H + WV Sbjct: 66 PCDVEVVSDSSYVVKAINEWLESWIRRDFKK-----VKNVDLWKAYIEAAAPHHVHGTWV 120 Query: 122 KGHAGHPENERCDELARAAAMN 143 +GH GHPENERCDELAR A Sbjct: 121 RGHDGHPENERCDELARNEAER 142 >UniRef50_A4QYI2 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QYI2_MAGGR Length = 341 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 9/150 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALKE 61 E++TDGS +GN I + G + TN R EL A + AL++L Sbjct: 188 EVYTDGSSMGNGKKNSAAGIGVFFGLGDPRNLSEQLHNGPQTNQRAELTAILRALQSLGA 247 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----QI 116 + V + +DS+Y + W W+ W T+ K V N DL Q + + Q + Sbjct: 248 NEGVRIFSDSKYSISCVCDWYKKWQTSNWTTSAGKEVMNKDLIQPIRRLIEQREKRGVKT 307 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTL 146 ++ WVKGHA N + D LA A L Sbjct: 308 EFVWVKGHAATEGNVQADLLAVEGAKMARL 337 >UniRef50_Q6C0A0 YALI0F26543p n=1 Tax=Yarrowia lipolytica RepID=Q6C0A0_YARLI Length = 281 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 69/149 (46%), Gaps = 15/149 (10%) Query: 8 FTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK--- 60 +TDG+C N G G I Y G + TN R EL A + ALE + Sbjct: 130 YTDGACENNGGHRPKGGIGVYFGELHPCNYSGPLVGDVQTNQRAELSAILKALEIIDNRG 189 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH------ 114 E+ + +DSQY +QW+ WKK G+KT K V+N DL +D L + Sbjct: 190 ENLNWQIRSDSQYAVNCCSQWLEGWKKNGFKTGKGKEVENQDLILAIDEYLQKPRTRIGT 249 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMN 143 +I ++ + GHAG ENE D LA+ Sbjct: 250 RITFKHIPGHAG--ENEEVDALAKQGITE 276 >UniRef50_A1SDS5 Ribonuclease H n=1 Tax=Nocardioides sp. JS614 RepID=A1SDS5_NOCSJ Length = 143 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 74/137 (54%), Gaps = 7/137 (5%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 E+FTDG+C GNPGPGG+ L S +TN RME+ AA+ A+ +L + Sbjct: 9 EVFTDGACSGNPGPGGWAWAL---DTAVYASGREAPSTNQRMEIRAALEAVRSLDGP--L 63 Query: 66 ILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKG 123 ++ +DS YV W W R W ++ +KPV N DLW+ L + + + WVKG Sbjct: 64 LVVSDSTYVVHCFRDLWWQGWLDRDWVSSARKPVANRDLWEPLVGLVQDRGDVAFAWVKG 123 Query: 124 HAGHPENERCDELARAA 140 H+GH N+ D LA AA Sbjct: 124 HSGHVMNDFVDRLAVAA 140 >UniRef50_A8EUW9 Ribonuclease HI n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUW9_ARCB4 Length = 268 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 8/158 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKT--FSAGYTRTTNNRMELMAAIVAL---E 57 + ++I+ DG+C GNPG G G ++ + + A TNN EL A AL Sbjct: 100 EHIKIYCDGACSGNPGNAGSGIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQALTIAS 159 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 + + TDS+Y IT W ++WKK GW + +KN++L Q + + Sbjct: 160 QTHSENVISIFTDSKYAIDCITTWAYSWKKNGWSKKGGE-IKNLELIQEAHYLYEKIKSK 218 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 I+ VKGH+G NE D +A A + Y Sbjct: 219 IEITHVKGHSGIEGNELADRMAVNAIKEKNEDFAFYSY 256 >UniRef50_B6VBD2 Putative uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis brenneri RepID=B6VBD2_CAEBE Length = 247 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAI-LRYRGREKTFSAGY---TRTTNNRMELMAAIVALEA 58 + + I+TDG L N PG G + Y + + GY TNNR EL A ALE Sbjct: 11 EPLHIYTDGCALRNGQPGAKGGWAIVYELGDFQDAYGYCMDGPQTNNRFELEAIGQALER 70 Query: 59 LKEHC---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL---- 111 E ++ + TDS+Y I WI WK+ GW+ + K V N L Q +D+ L Sbjct: 71 SLESGGEYDITIFTDSKYAINSIKHWIKKWKQNGWRNSQGKRVHNDLLIQDIDSMLEDIN 130 Query: 112 -GQHQIKWEWVKGHAGHPENERCDELARAAA-MNPTLEDTGYQVEV 155 +++E+V+ H+G+ NE+ D LA+ AA NP + + + Sbjct: 131 YAGGSVEFEYVEAHSGNWFNEKADRLAKKAAFKNPLYSNYDFNYHM 176 Score = 57.9 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 3 KQVEIFTDGSCLGNPGP---GGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVAL 56 + + I+TDG L N P GG+ + + + + TNNR EL A AL Sbjct: 183 EPLHIYTDGCALRNGQPGAKGGWAIVYEFGNYKNDKGHSDIGYQTNNRYELEAIKQAL 240 >UniRef50_B4SE10 Ribonuclease H n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SE10_PELPB Length = 146 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 55/124 (44%), Positives = 73/124 (58%), Gaps = 1/124 (0%) Query: 23 GAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ-W 81 G + R + + + TTNNRMEL AAI ALEALKE C V L +DS Y+ I + W Sbjct: 23 GCAVDVRLHDSSIAGYSPATTNNRMELSAAIEALEALKEPCRVDLYSDSSYLVNAINEGW 82 Query: 82 IHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 + W WKT+ KK V+N+DLW+++ L H I + VKGH+ +P N RCD LAR A Sbjct: 83 LKRWTINNWKTSTKKNVENIDLWKKILKLLTLHTITFHKVKGHSDNPYNNRCDTLAREAI 142 Query: 142 MNPT 145 + Sbjct: 143 KKKS 146 >UniRef50_Q7Q3X5 AGAP008088-PA n=1 Tax=Anopheles gambiae RepID=Q7Q3X5_ANOGA Length = 294 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V ++TDGSC GN + Y + R TNN E+ AA +A+ ++ Sbjct: 141 VHVYTDGSCEGNGTARAVAGLGVYFAEGHALNTAKPVSGRATNNCGEIQAASLAIRLARQ 200 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL--GQHQIK 117 ++++TDSQ++ IT+W+ WK+R W A PVKN + L+ L G QIK Sbjct: 201 QGIRRLVVNTDSQFLINAITKWLPGWKRRNWTLASGGPVKNQTDFMELERELSAGDIQIK 260 Query: 118 WEWVKGHAGHPENERCDELARAAAM 142 W V H G NER D+LAR + Sbjct: 261 WNHVDAHCGILGNERADQLARKGSE 285 >UniRef50_A5L3F5 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L3F5_9GAMM Length = 153 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 79/146 (54%), Gaps = 9/146 (6%) Query: 4 QVEIFTDGSCLGNP------GPGGYGAILRYRGREKTFSAGYTR---TTNNRMELMAAIV 54 + + TDG+ N G+GA++ G +G TN R EL+AA+ Sbjct: 5 KYIVATDGASNTNHIKANQFSIAGWGALVLKDGTYIHKLSGRIDGVLATNIRAELVAALE 64 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 L+A V L TDS+YV +G+T+W+ NWK++GW+ + KKPV + DLW LD Sbjct: 65 GLKATPLGSSVELFTDSEYVIKGLTEWMDNWKRKGWRNSAKKPVAHKDLWTELDELYQNR 124 Query: 115 QIKWEWVKGHAGHPENERCDELARAA 140 ++ WVKGH+GH NE D LA+ A Sbjct: 125 DVQLTWVKGHSGHLLNEEADTLAKEA 150 >UniRef50_C4QWX0 Ribonuclease H1 n=1 Tax=Pichia pastoris GS115 RepID=C4QWX0_PICPG Length = 274 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 68/157 (43%), Gaps = 20/157 (12%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT---TNNRMELMAAIVALEALKEH 62 I+TDG+ GN G G + + T TN R EL A AL +++ Sbjct: 118 IIYTDGATRGNGKFGAKGGYGVFFKENDLRNISKPLTGVQTNQRAELSAVRDALIIIEKD 177 Query: 63 ------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL--------- 107 + TDS+Y IT+W+ WK+ W+TA PV+N DL + Sbjct: 178 LASGSKKHYTIRTDSRYTINSITKWVTKWKQNDWRTATG-PVQNRDLIEPCTNLIESVNS 236 Query: 108 -DAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 LG + E+VKGH+G NE D+LA A A Sbjct: 237 KYKELGMPPLNIEYVKGHSGDYGNEMADKLATAGADR 273 >UniRef50_B4VV33 RNase H, putative n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VV33_9CYAN Length = 1624 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 21/141 (14%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRG-------REKTFSAGYTRTTNNRMELMAAIVA 55 K+V ++ DGS LGNPG GG+G +L Y + A +TTN+RME++AAI Sbjct: 1267 KKVVMYCDGSSLGNPGQGGWGVVLSYTNPQTGQTTTRELSGADSEQTTNSRMEILAAIKG 1326 Query: 56 LEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 LEA+++ CEV + TDS Y+ + K N DL RLD HQ Sbjct: 1327 LEAIQDTCEVEIHTDSNYLIGAM--------------QGNKRKANQDLLTRLDELSQNHQ 1372 Query: 116 IKWEWVKGHAGHPENERCDEL 136 I W VKGH+G+ NERCD+L Sbjct: 1373 ISWHHVKGHSGNALNERCDQL 1393 >UniRef50_C0QFZ9 RnhA1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFZ9_DESAH Length = 219 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 66/140 (47%), Gaps = 15/140 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 ++I+TDG+ GNPGP G G +L Y ++ S R TNN EL A LE LK Sbjct: 89 IQIYTDGASSGNPGPAGLGVVLLYGDHKREISESIGRATNNVAELNAIKRGLELLKRTDL 148 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVK 122 + + TDS Y + + WK P N +L + +G+ + ++ VK Sbjct: 149 PIEIHTDSTYCIGVL---VKGWK----------PAMNQELILGIRKLMGRFKQLRLVKVK 195 Query: 123 GHAGHPENERCDELARAAAM 142 GH+G NER D LA A Sbjct: 196 GHSGVQGNERADALATAGVK 215 >UniRef50_Q6C6C0 YALI0E10725p n=1 Tax=Yarrowia lipolytica RepID=Q6C6C0_YARLI Length = 474 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 10/147 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVA---LEA 58 ++F DG+C N GP Y G ++ T T+ R EL A + A +E Sbjct: 303 QVFVDGACSNNGGPDAKAGYGLYFGENNPWNVAASVMGTVHTSQRAELQAIMKAYQVIEK 362 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ---RLDAALGQHQ 115 + +DS Y +T+W H+WKK GWKT++ KPV+NVDL Q ++ L + Sbjct: 363 KDNGHSYEIMSDSSYAINCLTKWRHDWKKHGWKTSEGKPVENVDLIQDCIKIMDRLVKRG 422 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 I + V+ H N+R D LAR Sbjct: 423 IALKKVQAHGDSKGNKRADVLARQGVQ 449 >UniRef50_A5UB13 Ribonuclease H n=1 Tax=Haemophilus influenzae PittEE RepID=A5UB13_HAEIE Length = 117 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 58/87 (66%), Positives = 67/87 (77%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQ+EIFTDGSCLGNPG GG GA+LRY+ EK S GY +TTNNRMEL A I AL LK Sbjct: 21 MQKQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLK 80 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKK 87 E C + L +DSQY++ GIT+WI NWKK Sbjct: 81 EPCLITLYSDSQYMKNGITKWIFNWKK 107 >UniRef50_Q2S3J4 Ribonuclease H n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3J4_SALRD Length = 307 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 15/140 (10%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + I TDG+C+ NPGPGG+ A++ + G + TTNNRMEL A AL + Sbjct: 169 RYRISTDGACISNPGPGGWAAVIVHDGEVRRIMGRVDDTTNNRMELWAIGEALSEIPSDS 228 Query: 64 EVILSTDSQYVRQ-GITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 EV + +DS+Y + +W + +N L + + + +H+++W V+ Sbjct: 229 EVEIRSDSRYAIKIASGEWNAS--------------ENRALVEAVRRQVDRHEVEWTKVE 274 Query: 123 GHAGHPENERCDELARAAAM 142 GH+G PENE D+LA AA Sbjct: 275 GHSGDPENEEADDLAEAAVR 294 >UniRef50_UPI000051AB6A PREDICTED: similar to Ribonuclease H1 (RNase H1) (Ribonuclease H type II) n=2 Tax=Apocrita RepID=UPI000051AB6A Length = 261 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE 61 V ++TDG+C N I + G + R TNN E+ A +A + K+ Sbjct: 117 VNVYTDGACSLNGHKNAQAGIGVWFGNNHPLNISKAVIGRATNNMAEIQAVTIAAKQAKK 176 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + ++TDSQ++ I W+ WK+ GWKT + KPV N ++ AL + W Sbjct: 177 AGIKNLKINTDSQFLISCINNWMPKWKRNGWKTFNNKPVINKIELLEMENALKSLNVIWN 236 Query: 120 WVKGHAGHPENERCDELARAA 140 V GHAG NE D+LARA Sbjct: 237 HVNGHAGIYGNEMADKLARAG 257 >UniRef50_D1WSF8 Ribonuclease H n=10 Tax=Streptomyces RepID=D1WSF8_9ACTO Length = 249 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEA 58 M + + DG+ GNPGP + ++ + + TNN EL A LE+ Sbjct: 9 MNESIIAACDGASKGNPGPAAWAWVVADALGEPVRWEAGPLGTATNNVAELTALAQLLES 68 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + V + DSQY +T+W+ WK+ GWKT+ KPV N +L R+DA L + + Sbjct: 69 IDPAVRVEVRMDSQYAMNAVTKWLPGWKRNGWKTSAGKPVANRELVTRIDALLADRPVTF 128 Query: 119 EWVKGH--AGHPENERCDELARAAA 141 +V H G P N D+ A A Sbjct: 129 RYVPAHQVNGDPLNAIADQAADEVA 153 >UniRef50_C4QPU4 Phosphoglucomutase, putative n=5 Tax=Schistosoma mansoni RepID=C4QPU4_SCHMA Length = 826 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 14/162 (8%) Query: 3 KQVEIFTDGSCLG--NPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALE 57 ++V ++TDGSC G + GYG Y G ++ TNNR E+ A I A++ Sbjct: 123 RRVMVYTDGSCNGAHDDRRAGYGV---YWGPNHPWNVSERLEGEQTNNRAEIEAVICAIK 179 Query: 58 A--LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 + + + TDS++ + T+W W + WK A+ + K + +RL + + Sbjct: 180 QAHIGGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESG 239 Query: 116 IK--WEWVKGHAGHPENERCDELARAAAMN--PTLEDTGYQV 153 I+ W V+ H G NE D LA A++ PT G + Sbjct: 240 IEIIWYHVRSHRGVHGNEEADSLANIGAIDVKPTKSFPGQKP 281 >UniRef50_C1BQR6 Ribonuclease H1 n=2 Tax=Caligus rogercresseyi RepID=C1BQR6_9MAXI Length = 394 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 9/152 (5%) Query: 1 MLKQ--VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIV 54 M K V++FTDG+C+ N G G I + + + R TNN EL A Sbjct: 239 MNKDGWVKVFTDGACIHNGRRGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISR 298 Query: 55 ALEALKEHC--EVILSTDSQYVRQGITQWIHNWKKRGW-KTADKKPVKNVDLWQRLDAAL 111 A++ +K ++ + TDSQ+ I + NWKK+ W + + + V+N + LD + Sbjct: 299 AIQIVKSDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFLVLDDIM 358 Query: 112 GQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 IK+ +V GH N D+LAR + N Sbjct: 359 KNMTIKFIYVPGHRNIYGNNCADKLARRGSGN 390 >UniRef50_C4WXR8 ACYPI28043 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WXR8_ACYPI Length = 157 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 7/145 (4%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEAL- 59 V ++ DG+C N G + + + TNN E+ AA+ A++ L Sbjct: 10 DVVVYVDGACPRNGTRGARAGVGVWFDDFHDLNVSSTVPGIQTNNNAEIYAAVKAIDMLL 69 Query: 60 --KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-I 116 + V + TDS ++ + +WI+ WK GW+ V N D+ ++LD+ + + Sbjct: 70 KYTDEYRVEIMTDSMFLCNCMYKWINKWKCNGWRNCKGNTVANKDMLEQLDSCIKAMDSV 129 Query: 117 KWEWVKGHAGHPENERCDELARAAA 141 K+ +V+ H H N++ D+LAR A Sbjct: 130 KFTYVRAHNKHYGNDQADKLARQGA 154 >UniRef50_Q484S6 Ribonuclease HI n=3 Tax=Alteromonadales RepID=Q484S6_COLP3 Length = 272 Score = 141 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 10/150 (6%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY--TRTTNNRMELMAAIVALEALKE 61 +EI+ DG+C NPG G G + G+ + G TNN EL + A + + Sbjct: 100 DIEIYCDGACSPNPGKSGTGLAVYELGKVTSLYYGLYLPNGTNNTAELSGMLSAFQIAQH 159 Query: 62 ------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--Q 113 + + +DS+Y IT+W WK +GW + +KN+ L Q+ A Sbjct: 160 FIDKNSEQSICILSDSKYSIDSITKWAKGWKAKGWTRGKGEEIKNLALIQQCYALYKTMH 219 Query: 114 HQIKWEWVKGHAGHPENERCDELARAAAMN 143 +I VKGHA NE D +A A Sbjct: 220 TKITIRHVKGHANIEGNELADRMAVLARKQ 249 >UniRef50_Q6CHD9 YALI0A09878p n=1 Tax=Yarrowia lipolytica RepID=Q6CHD9_YARLI Length = 276 Score = 141 bits (355), Expect = 9e-33, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 9/147 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 + ++TDG+ N + G + + TN R EL A A + +K Sbjct: 129 IPVYTDGASRNNQSSNAKAGYGIFFGNGSEDNVSKPLAGMQQTNQRAELTAIYEACKIIK 188 Query: 61 EHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--Q 115 + + + TDSQY + +W NW++ GWK + V N D+ + L + Sbjct: 189 DRNDRRYYDIRTDSQYSISCLKEWGMNWERNGWKNSKGADVSNQDIIKPARNLLISLGDR 248 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 ++ VKGH+ P N+ D LA A Sbjct: 249 VRLTKVKGHSSDPGNDAADALAVRGAE 275 >UniRef50_C1A5K0 Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5K0_GEMAT Length = 211 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 64/156 (41%), Positives = 87/156 (55%), Gaps = 13/156 (8%) Query: 5 VEIFTDGSCLGNPG----PGGYGAILRYRGREKTF-----SAGYTRTTNNRMELMAAIVA 55 V ++ D SCLGN PGG GA++ +R + T A TTNNRM L + I Sbjct: 8 VAVYADESCLGNGKSGDTPGGLGALIEFRKNDGTVLRFDLWASEPNTTNNRMALRSVIDT 67 Query: 56 LEALKEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 EA+ V+ +TDS+Y+ G++ W+ W RGW+ D V+NV+LWQ+ AA+ Sbjct: 68 FEAMSRKGNRLSVLFTTDSRYIVDGMSSWVRGWMSRGWRRKDGA-VENVELWQQAVAAIA 126 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 HQ +W WVKGHAGHP+NE + LA AA D Sbjct: 127 THQTQWAWVKGHAGHPQNEYANYLATRAAAVQDRSD 162 >UniRef50_C4YSL5 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=C4YSL5_CANAL Length = 465 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 26/163 (15%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---------RTTNNRMELMAAIVALE 57 ++ DG+C N G Y G E + R TN R EL A AL+ Sbjct: 290 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 349 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + I+ +DS Y +T+W W GW+ + + + N +L + Sbjct: 350 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 409 Query: 111 LGQHQ----------IKWEWVKGHAGHPENERCDELARAAAMN 143 +++ VKGH+G NE D LA A Sbjct: 410 YESINEEYDDRDWGSLRFVHVKGHSGVEGNEEADRLANLAVDE 452 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 26/163 (15%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---------RTTNNRMELMAAIVALE 57 I+ DG+C N P Y G + + TN R EL A AL Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + ++ +DS Y + +T+W + W + GW + + N DL + Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176 Query: 111 L----------GQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 G ++ VKGH+G+ NE D LA AA Sbjct: 177 YEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAADR 219 >UniRef50_Q6CGX9 YALI0A15059p n=1 Tax=Yarrowia lipolytica RepID=Q6CGX9_YARLI Length = 225 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSA----GYTRTTNNRMELMAAIVALEALKE 61 E++TDG+C+ N Y G F+ G T TN R EL+A AL+ ++E Sbjct: 73 EVYTDGACIRNGKRDARAGCGVYFGANNPFNESKILGGTLQTNQRAELVAIKRALQLIQE 132 Query: 62 HCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG----QH 114 + TDS Y + +T+W W++ GW PV N D + + L ++ Sbjct: 133 WVNGEYYEIYTDSDYALKCVTEWCDKWERNGWVNCKGYPVSNQDTIKDILKLLNSVGCRN 192 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMN 143 + E V H+ N DELAR AA Sbjct: 193 VLGIEKVLAHSDCEGNNGADELARDAAER 221 >UniRef50_A5E5Q8 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E5Q8_LODEL Length = 331 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 28/175 (16%) Query: 1 MLKQVEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYT----------RTTNNRMEL 49 M I+TDG+C GN Y G+ + TN R EL Sbjct: 145 MPNVTRIYTDGACRGNNRRRLAASGYGVYYGKHDIRNKAVPLSDVDDVDNIPPTNQRAEL 204 Query: 50 MAAIVALEALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD 102 A + AL + + C + +DS Y + I W W K GW+ K+PV N D Sbjct: 205 HAVLHALRNIDKELDKAIYKCRYAICSDSIYALKCIKIWSAKWLKNGWQNVAKRPVANAD 264 Query: 103 LWQR----------LDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + + + LG + +++ V+GH+G+ N+ D LA A +E Sbjct: 265 IIKEAVRLTAKIDDVYGQLGWNSLQFIHVRGHSGNKGNDIADNLASIGADEMAME 319 >UniRef50_Q04CJ1 RNase HI n=5 Tax=Lactobacillus RepID=Q04CJ1_LACDB Length = 255 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 76/155 (49%), Gaps = 21/155 (13%) Query: 6 EIFTDGSCLGNPGP----------GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVA 55 IFTDG C N + ++ Y G++ + S G TNN ME+ A + + Sbjct: 96 HIFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLES 155 Query: 56 LEALKE----HCEVILSTDSQYVRQGITQ------WIHNWKKRGWKTADKKPVKNVDLWQ 105 L+ L+E ++ S DSQYV + ++ WI W++RGWK AD PV N +LWQ Sbjct: 156 LKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQ 215 Query: 106 RLDAALGQH-QIKWEWVKGHAGHPENERCDELARA 139 + + + Q ++EWVKGHA N D L Sbjct: 216 EIAKEMAKFAQPEFEWVKGHANSAGNNFVDGLLNK 250 >UniRef50_C0QLK2 RnhA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLK2_DESAH Length = 201 Score = 139 bits (351), Expect = 2e-32, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 71/142 (50%), Gaps = 17/142 (11%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGR-EKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + I+TDG+C GNPGP G G ++ S TNN EL A + +E +K+H Sbjct: 72 IFIYTDGACSGNPGPAGSGVVVIQNDIIVHEISESLGPATNNIAELTAIKLGIEFVKDHH 131 Query: 64 E--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEW 120 E V L TDS+Y +T NWK + NV+L + + + + +K Sbjct: 132 ETPVTLYTDSRYAIGILT---MNWKAK----------ANVELVESIRKLMKPFKRLKVVH 178 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGH+GHP NER D LA +M Sbjct: 179 VKGHSGHPGNERADLLAVRGSM 200 >UniRef50_A5E5Q5 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E5Q5_LODEL Length = 321 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 66/170 (38%), Gaps = 28/170 (16%) Query: 3 KQVEIFTDGSCLGNPG-PGGYGAILRYRGREKTFSAGYT----------RTTNNRMELMA 51 K +I+TDG+ GN Y GR +A TN R EL A Sbjct: 146 KVTKIYTDGASRGNGKSRTAASGYGVYYGRNDPRNAAVPLSSVDDIHTVAPTNQRAELHA 205 Query: 52 AIVALEALKE-------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLW 104 AL+ +K + + +DS+Y Q + +W + W K GW KPV N D+ Sbjct: 206 IHHALKNIKNELATAPTGKQYSIHSDSKYAMQCVDEWSNKWLKNGWTNTAGKPVANADII 265 Query: 105 QR----------LDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNP 144 + + G +++ VKGHAG NE D LA A Sbjct: 266 KEAVQLKNEINEIHQQRGHQPLQFVHVKGHAGDERNEAADRLANIGADQM 315 >UniRef50_UPI00016B24DF ribonuclease HI n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B24DF Length = 141 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHC 63 + +TDGS NPGPGG+ I R + TTN RME A I AL + Sbjct: 2 ITYYTDGSASPNPGPGGFAVI---RDLQPWILGSEDGETTNIRMEGKALIAALRDA-DGA 57 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + TDS++ +T+W W++RGW T +KN+D+ Q L Q Q WV+G Sbjct: 58 PCAIYTDSEFWINVVTKWAPGWQQRGW-TKKGGEIKNLDIVQELYELYAQSQADLRWVRG 116 Query: 124 HAGHPENERCDELARAA 140 H G NE DE A A Sbjct: 117 HEGDEGNELADEWANRA 133 >UniRef50_C7GZL7 Ribonuclease HI n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZL7_9FIRM Length = 206 Score = 138 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 81/178 (45%), Gaps = 37/178 (20%) Query: 3 KQVEIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 ++ I++DGSC GN GG+GAIL +R +K G TTNN MEL+A I A + Sbjct: 6 NRIRIYSDGSCRGNQSDENLGGFGAILEFRDHKKEVKGGMVNTTNNVMELLAIIKAFRLI 65 Query: 60 K-EHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 K + V + +DS Y+ +Q W W+K G+ T+ K+PVKNV+LW+ L + + Sbjct: 66 KTDKYSVDVFSDSAYIVNCFSQGWYKKWEKNGFITSSKEPVKNVELWKELIGYNAKFNVV 125 Query: 118 WEWVKGHAGHP--------------------------------ENERCDELARAAAMN 143 + +KGH N R D LA +AA Sbjct: 126 FHKIKGHLDLDATEATLKKAYTHFLKDKSNKLYTYDDFMYIACMNNRADALATSAASE 183 >UniRef50_Q0URN5 Putative uncharacterized protein n=2 Tax=Leotiomyceta RepID=Q0URN5_PHANO Length = 613 Score = 138 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 9/152 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 + ++TDGS LGN G G + Y G + + R TN R EL A AL+ + Sbjct: 231 INVYTDGSALGNGKVGAVGGVGVYFGPNDSRNISEPLRGSRQTNQRAELTAVARALDHIP 290 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----Q 115 ++ TDS Y + +T+W W+K WK++ K V+N DL + + A + + + Sbjct: 291 IDRSALIHTDSNYSIKCLTEWFQKWEKNNWKSSSGKDVENKDLVEPIIARIRERDMCRAK 350 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 ++W+KGHA P N D LA + T E Sbjct: 351 TDFKWIKGHANDPGNVAADLLAVQGSRTSTPE 382 >UniRef50_Q6CHQ1 YALI0A06523p n=1 Tax=Yarrowia lipolytica RepID=Q6CHQ1_YARLI Length = 369 Score = 138 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 10/151 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFS----AGYTRTTNNRMELMAAIVAL----E 57 +IFTDG+C N Y G + + TN R EL A + A Sbjct: 208 QIFTDGACSRNGQKDAVAGFGLYLGENHKENLSGRVYGSPQTNQRAELTAILHAYCICAS 267 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--HQ 115 L + + TDS Y +T+W W++ GW+ +PV N D+ +R+ + + Sbjct: 268 KLSDGRLYEIYTDSSYAIDCLTKWHIAWERNGWRNRGGEPVANQDVIKRILTLKAESTNC 327 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTL 146 I + V+ H N++ D LAR L Sbjct: 328 IGLKKVEAHGSSEGNKQADRLARQGVTAKNL 358 >UniRef50_D2EJR4 RNase HI n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EJR4_PEDAC Length = 252 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 16/149 (10%) Query: 3 KQVEIFTDGSCLGNPGP----------GGYGAILRYRGREKTFSAGYTRTTNNRMELMAA 52 ++ ++TDG + +L+ +E + S G TNNRMEL A Sbjct: 81 DRILLYTDGGSRNTGTVKGGHVRQADLAAWAYLLKKDDQEYSQSGGEFGATNNRMELTAL 140 Query: 53 IVALE----ALKEHCEVILSTDSQYVRQGIT-QWIHNWKKRGWKTADKKPVKNVDLWQRL 107 LE + + + + +DS+Y+ IT +W+ W++RGWK + PV N +LWQ++ Sbjct: 141 WRGLETALAKVGKDAPITVISDSKYILNAITKKWLAGWQRRGWKKSTGDPVANQELWQQI 200 Query: 108 DAALGQH-QIKWEWVKGHAGHPENERCDE 135 L Q +++ W KGHA + N D Sbjct: 201 AKLLPQFTDLQFLWTKGHATNQGNIFVDH 229 >UniRef50_Q6CH42 YALI0A12705p n=1 Tax=Yarrowia lipolytica RepID=Q6CH42_YARLI Length = 236 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 9/148 (6%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEAL 59 +V ++TDG+C N G + Y G + R TN R EL A A+E + Sbjct: 87 RVPVYTDGACHNNQGSNARAGVGVYFGPGHPDNVSRPVQGSRQTNQRAELEAIHDAVETI 146 Query: 60 ---KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 + + TDS Y + +W NW++ W T+ +PV++ DL + L Sbjct: 147 HRRNDGINYEVKTDSAYAQNAFNKWGSNWQQNNWTTSKNEPVQHRDLIEPTLNRLNDLGD 206 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAM 142 +++ VKGH+G+P N+ D+LA A Sbjct: 207 RVEISKVKGHSGNPGNDAADKLAGKGAR 234 >UniRef50_Q6BQV8 DEHA2E01870p n=2 Tax=Debaryomyces hansenii RepID=Q6BQV8_DEBHA Length = 306 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 30/171 (17%) Query: 7 IFTDGSCLGNPGP----GGYGAILRYRGR-------EKTFSAGYTRTTNNRMELMAAIVA 55 I+ DG+ GN GYG + + + TN R EL A A Sbjct: 132 IYVDGASRGNGKIRMPISGYGVFYSASDKRNGAISLNQIDDVHVNKPTNQRAELFAIKHA 191 Query: 56 LEALKEH---------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR 106 L + + + +DSQY + IT+W +W K WKT+ KPV N D+ Sbjct: 192 LIDIANEIVECNDKVTTKYEIYSDSQYAQSCITKWCDDWMKNNWKTSQGKPVSNKDIISS 251 Query: 107 -------LDAALGQH---QIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 ++ +H +++ V+GH G NE D LA A + E Sbjct: 252 VIPILNYINQYYNKHHFGDLQFFHVRGHKGDYGNEMADRLANIGADDMEKE 302 >UniRef50_D0LP47 Ribonuclease H n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LP47_HALO1 Length = 215 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 16/142 (11%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK--EH 62 + I+TDG+C GNPGP G GA++ + S TNN EL+A ALEA+ + Sbjct: 85 IIIYTDGACTGNPGPAGIGAVILDGEERREISEYLGEGTNNIAELVAIERALEAVAPEDA 144 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWV 121 +V++ +DS Y +++ WK P NV+L R+ A ++++ V Sbjct: 145 RQVVVHSDSSYAIGLLSK---GWK----------PKANVELVGRIRALTAAVRRLRFVKV 191 Query: 122 KGHAGHPENERCDELARAAAMN 143 KGHAG PENERCDELAR A Sbjct: 192 KGHAGIPENERCDELARDAITR 213 >UniRef50_A8B979 Ribonuclease H n=2 Tax=Giardia intestinalis RepID=A8B979_GIALA Length = 352 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 9/143 (6%) Query: 3 KQVEIFTDGSCLGN-PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 FTDG + GPGG+G +L F+ Y TTNNRMEL + AL + + Sbjct: 194 PDYVAFTDGGSTPSAGGPGGWGCLLFNATEMHVFARSYKSTTNNRMELRGILCALLNVPQ 253 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRG---WKTADKKPV-----KNVDLWQRLDAALGQ 113 + + +DSQY W+ WKK+G + ++K + N DL + A + Sbjct: 254 GSVLHIYSDSQYAINCCRVWLTQWKKKGLLCPQNPNRKDIINAKPLNKDLLLWIYAEMQS 313 Query: 114 HQIKWEWVKGHAGHPENERCDEL 136 +K+ VKGH+G+ N+ D L Sbjct: 314 RTVKFVHVKGHSGNSLNDFVDGL 336 >UniRef50_B0WK63 Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0WK63_CULQU Length = 186 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC- 63 V ++TDGS GN ++ Y G +A R TNN E +AA +A+ K+ Sbjct: 21 VYVYTDGSWEGNGTAAACAGLVVYFGEGHALNAVSGRATNNCGEFLAAALAIRLTKQQGI 80 Query: 64 -EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-----HQIK 117 + ++TDS+++ IT+W+ WK+ WK + KPVKN ++ LD + +IK Sbjct: 81 KRLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQELAEKSIKIK 140 Query: 118 WEWVKGHAGHPENERCDE 135 W H NER D Sbjct: 141 WNHADAHCVILGNERADA 158 >UniRef50_Q12R78 Ribonuclease H n=22 Tax=Proteobacteria RepID=Q12R78_SHEDO Length = 263 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 9/158 (5%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVAL----E 57 + I+TDG C NPG G G L ++G+ E + + + TNN EL A AL Sbjct: 94 DIVIYTDGGCEPNPGEAGSGLALYHKGQLTELWYGLYHPKGTNNTAELNALYQALLIAKT 153 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 L +V + +DSQY + I++W + WK +GW + + N+D+ + + + Sbjct: 154 KLDAGHKVQIFSDSQYSIKCISEWAYGWKAKGWSRKGGE-IANLDIIKLAHGVFDELKDT 212 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 +K E V H G NE D ++ A Y Sbjct: 213 LKLEHVAAHVGIEGNELADRMSILAITEKNPAFVKYDK 250 >UniRef50_B9WJ33 Ribonuclease H, putative n=6 Tax=Saccharomycetales RepID=B9WJ33_CANDC Length = 266 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 67/168 (39%), Gaps = 34/168 (20%) Query: 7 IFTDGSCLGNP----GPGGYGAILRYRGREKTFSAGYT----------RTTNNRMELMAA 52 ++ DG+ GN P GYG Y G + +A + TN R EL Sbjct: 98 VYVDGAARGNGQTSKAPSGYGV---YYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGV 154 Query: 53 IVALEALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 AL+ + + +DS+Y Q I +W NW K GWK + +PV N DL Q Sbjct: 155 KHALKNIHNDLQSGKATGRTEIHSDSKYAIQSINEWSSNWAKNGWKNSKGEPVANKDLIQ 214 Query: 106 RLDAALGQ----------HQIKWEWVKGHAGHPENERCDELARAAAMN 143 A +K+ VKGHAG P NE D LA A Sbjct: 215 ETVALKNNINKTYQDKNWGNLKFVHVKGHAGDPGNEAADRLANQGADQ 262 >UniRef50_Q6ML79 RnhA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML79_BDEBA Length = 153 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 4/141 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEAL 59 L + E++TDGS G G + ++ R R ++G TR T+N+ME AAI AL +L Sbjct: 12 FLPRFEVYTDGSVKN--GRGAWAYVVVRRNRVLREASGVQTRPTSNQMEFQAAIEALSSL 69 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E ++L TDS+ + + + + + WK GW + +P+ V+ ++LD L +++W+ Sbjct: 70 PEKSRIVLYTDSRVLIETLQK-VPEWKGLGWVKSRGQPIPQVNQLKQLDQLLTVRKVQWK 128 Query: 120 WVKGHAGHPENERCDELARAA 140 WVK H+G NERCD L A Sbjct: 129 WVKAHSGIKHNERCDVLCVRA 149 >UniRef50_Q7V385 Possible ribonuclease HI n=7 Tax=Prochlorococcus marinus RepID=Q7V385_PROMP Length = 240 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 66/142 (46%), Positives = 88/142 (61%), Gaps = 5/142 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61 +E TDG+C GNPGPGG+G I+ E TTNNRMEL AAI LE LK+ Sbjct: 9 IEAATDGACSGNPGPGGWGGLIIFNDNSELEIGGSEENTTNNRMELTAAIKTLEKLKDFQ 68 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 L TDS+YV +G T+WI NWK+ GWKT+ K V+N+DLWQ++D + + E+ Sbjct: 69 LKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSAGKSVQNLDLWQKIDNLRIKGLV-MEF 127 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGH+G +NER D +A + + Sbjct: 128 VKGHSGDKQNERVDLIATSYSK 149 >UniRef50_A6LWB3 Ribonuclease H n=2 Tax=Clostridium RepID=A6LWB3_CLOB8 Length = 265 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 1/137 (0%) Query: 6 EIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +I+TD S L GG+ I+ +G ++ +++ EL AA+ ALE LK+ + Sbjct: 122 KIYTDASYLEKKNHGGFAFIIEDLKGNYNLYTEKVKDIGSSQAELEAAMKALELLKDVEK 181 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 + + TDSQYVR+G+T+W+ WK +KT + +P KN++ W D A I+++WVK H Sbjct: 182 IRIITDSQYVRKGLTEWLPIWKLNDFKTINGEPAKNIEKWLDFDKACNGKYIEFQWVKAH 241 Query: 125 AGHPENERCDELARAAA 141 + H EN CD A+ A Sbjct: 242 SNHFENSLCDMYAKDIA 258 >UniRef50_A5D9X7 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X7_PICGU Length = 260 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 28/164 (17%) Query: 6 EIFTDGSCLGNPG----PGGYGAILRYRGREKTFSAGYTR------TTNNRMELMAAIVA 55 I+ DG+ GN GYG + G E+ + ++ TN R EL A A Sbjct: 96 HIYVDGAARGNGKVRSPKSGYG-VFYGEGDERNAAVPLSKVDSDRTGTNQRAELHALNHA 154 Query: 56 LEALKE-------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR-- 106 L+ + + E I+ +DSQY + + +W WK GW+TA PV N DL ++ Sbjct: 155 LDDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAV 214 Query: 107 -----LDAALGQHQ---IKWEWVKGHAGHPENERCDELARAAAM 142 ++ A + I +V GHAG+ NE D+LA A Sbjct: 215 DKVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGAD 258 >UniRef50_B9WIZ5 Ribonuclease H, putative n=4 Tax=Candida RepID=B9WIZ5_CANDC Length = 233 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 60/163 (36%), Gaps = 26/163 (15%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---------RTTNNRMELMAAIVALE 57 I+ DG+C N P Y G + + TN R EL A AL Sbjct: 57 IYVDGACRHNGSPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGLIPTNQRAELWAMNHALR 116 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + I+ +DS Y + +T W W + GW + + N DL + Sbjct: 117 NIWNELEEETEDGKAIIYSDSIYAIKCLTDWPQKWTRNGWLNVHGQTISNYDLVTKNYEL 176 Query: 111 L----------GQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 G Q+ V+GH+G+ NE D LA AA Sbjct: 177 YEWINDEYDDRGWGQLNLIHVRGHSGNDGNEEADNLANLAADR 219 >UniRef50_C4XZS8 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XZS8_CLAL4 Length = 303 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 19/163 (11%) Query: 3 KQVEIFTDGSCLGNPGPG----GYGAILRYRGREKTFSA-------GYTRTTNNRMELMA 51 ++ ++ DG+ GN G GYG + + TN R EL A Sbjct: 137 RRQRVYVDGAARGNGKSGIPNAGYGVYFGPNDKRNVSQGLHEVDDVDRIKPTNQRAELHA 196 Query: 52 AIVALEALKEHCE--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 + AL+ + + TDS Y + + W W+ GW + V N DL Q Sbjct: 197 LVHALDVAAKDSTTGYEILTDSAYAKNCVETWADKWEANGWVNTRGEKVANKDLVQSALT 256 Query: 110 ALGQHQ------IKWEWVKGHAGHPENERCDELARAAAMNPTL 146 + + V+GH+G NE+ D LA A + T Sbjct: 257 KYREAKERHGDDFSITHVRGHSGIEGNEQADSLANKGADDMTQ 299 >UniRef50_C5M9Q1 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M9Q1_CANTT Length = 284 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 65/169 (38%), Gaps = 34/169 (20%) Query: 6 EIFTDGSCLGNPGP----GGYGAILRYRGREKTFSAGYT----------RTTNNRMELMA 51 ++ DG+C GN GYG Y G + +A + R TN R EL A Sbjct: 114 VVYIDGACRGNGNKYNTSAGYGV---YYGHNDSRNAAVSLDFVDQDNNYRPTNQRAELHA 170 Query: 52 AIVALEALKEHC-------EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLW 104 L + + + TDS +V IT W + W GW V NVDL Sbjct: 171 LNHVLLNINSDIQNDECYRKTEIRTDSMFVINSITNWCYKWCNNGWNNVKGDTVANVDLI 230 Query: 105 QRLDAAL----------GQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 Q + G I+++ V+GH+G N+ D LA A N Sbjct: 231 QENFNLMNSINEEYEDRGWGDIEFKHVRGHSGDYGNDEADRLANIGADN 279 >UniRef50_Q5E052 Ribonuclease H n=20 Tax=Vibrionaceae RepID=Q5E052_VIBF1 Length = 148 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 7 IFTDGSCLGNPG---PGGYGAILRYRGRE--KTFSAGYTRTTNN-RMELMAAIVALEALK 60 I+ DG+ N G GG G + E T S R T+N +ELMA + LE Sbjct: 8 IYIDGAAPNNQGGCMKGGIGIAVYDVNNELMDTCSITVNRATDNAELELMALVEGLEYAA 67 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + I+ +DS++ +G +W+ WK +GW+ ADKKPV +LWQ++DA + ++ Sbjct: 68 DGD--IIYSDSEFCVKGYNEWLDGWKAKGWRKADKKPVAYRELWQQVDALRKEKYVEVVK 125 Query: 121 VKGHAGHPENERCDELARAAAM 142 V+ H+G NE+ D LA AA Sbjct: 126 VRAHSGVEGNEKADSLASMAAR 147 >UniRef50_Q03HC1 RNase HI n=3 Tax=Lactobacillaceae RepID=Q03HC1_PEDPA Length = 272 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 16/169 (9%) Query: 1 MLKQVEIFTDGSCLGNPGP----------GGYGAILRYRGREKTFSAGYTRTTNNRMELM 50 + + ++TDG + +++ G + S G TNNRME+M Sbjct: 69 VTPSIILYTDGGSRNTGNVRGGHVRKEDVAAWAFLIQKDGESISGSNGEFGATNNRMEIM 128 Query: 51 AAIVALEAL----KEHCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQ 105 A I L+ + E V++ DS+YV I W+ W++RGWK A+ + V N +LWQ Sbjct: 129 ALINGLQKIIDRYGEKAAVLVVADSKYVLDAIQRNWLSGWQRRGWKKANGEIVANKELWQ 188 Query: 106 RLDAALGQ-HQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 + + L + +++ W KGHA + N D+L E T ++ Sbjct: 189 AVASILKRMPNLEYRWTKGHATNEGNVFVDQLLNKTMDRMLREPTEFEA 237 >UniRef50_B8FI74 Ribonuclease H n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FI74_DESAA Length = 225 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 15/143 (10%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL-KE 61 + +TDG+ NPGP G G +L+Y+G K S TTNN EL A +VAL+ + K Sbjct: 90 NAIIAYTDGASSHNPGPAGLGVLLKYKGHAKEISQYIGETTNNVAELSAILVALQNIKKR 149 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEW 120 V + TDS+Y WK + NV+L ++ + + IK W Sbjct: 150 ELPVRIFTDSKY---SFGVLFQGWKAK----------ANVELIAKIQNEISKFRDIKCYW 196 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGHA +P NE D+LA A N Sbjct: 197 VKGHADNPYNEIADKLATDAIKN 219 >UniRef50_C6VIU9 Ribonuclease H (Putative) n=4 Tax=Lactobacillus RepID=C6VIU9_LACPJ Length = 294 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 22/171 (12%) Query: 5 VEIFTDGSCLGNPGPGG----------YGAILRYRGREKTFSAGYTRTTNNRMELMAAIV 54 + ++TDG G + + + T SAG TNNRME+MA + Sbjct: 69 ITVYTDGGSRNTGNVAGQHVHQDDKAAWAYRIEMPDQLVTDSAGEWGATNNRMEIMAFLR 128 Query: 55 ALEALKE----HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 ALE L++ ++ DSQYV +T+ W+ WK+RGWK ++ P+ N +LW+ +D Sbjct: 129 ALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRRGWKRSNG-PLVNAELWREVDR 187 Query: 110 ALGQHQ-IKWEWVKGHAGHPENERCDELARAA-----AMNPTLEDTGYQVE 154 L + + W KGHA + N D L A PT TG ++ Sbjct: 188 LLPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQMHAGQPTQASTGAKIS 238 >UniRef50_A9EZR8 Ribonuclease H n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EZR8_SORC5 Length = 250 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V ++ DG+C GNPGP G G ++ GR S TNN EL A + +LE + E Sbjct: 111 VIVYADGACSGNPGPAGLGVVIIDGGRRIERSEFLGTATNNIAELTAILRSLEEVDEPGR 170 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD-AALGQHQIKWEWVK 122 +++ TDSQY + + WK + N +L L A + + + +V Sbjct: 171 PIVIHTDSQYSIGVLQK---GWKAK----------ANTELIASLRGALAARPRARLVYVP 217 Query: 123 GHAGHPENERCDELARAAAMNPTLEDTGY 151 GHAG NER D LAR A T Y Sbjct: 218 GHAGVLLNERADALAREAVRERASRRTVY 246 >UniRef50_Q1QJH4 Ribonuclease H n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QJH4_NITHX Length = 128 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 1/114 (0%) Query: 29 RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKR 88 G TTNNRM++ AAIVAL L C V + TDSQY+++G+T W+ W ++ Sbjct: 9 GNPPINLWGGGRDTTNNRMKMTAAIVALTVLPPACGVTIYTDSQYLQKGMTLWMAGWTRK 68 Query: 89 GWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAM 142 ++ D V N DLW+ LDA + W W++GH GH NER D LA Sbjct: 69 DFRRKDG-LVPNADLWRTLDALASGRTVTWSWLRGHNGHAGNERADGLASEGRR 121 >UniRef50_Q034K7 RNase H with double-stranded RNA/RNA-DNA hybrid binding domain n=8 Tax=Lactobacillus RepID=Q034K7_LACC3 Length = 160 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 19/163 (11%) Query: 1 MLKQVEIFTDGSCL--GNPGPG--------GYGAILRYRGREKTFSAGYTRTTNNRMELM 50 M + + ++TDG GN G + A+L Y EK S G TNN ME+M Sbjct: 1 MAESIVLYTDGGNRNTGNQAGGSVRPTDKSAWAALLIYGDHEKMLSDGDYGRTNNYMEIM 60 Query: 51 AAIVALEALKE-HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLD 108 A I L+ALK V + +DS YV + Q W W++ W+ KPVKN +LWQ L Sbjct: 61 AVIQGLKALKRTDIPVDVYSDSAYVINTMQQRWWVKWQQNNWRN-HGKPVKNAELWQALL 119 Query: 109 AALGQHQ-IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 + + + I + VKGHA + N R D AA+N T++ Sbjct: 120 HQVNRFETITFHKVKGHATNRNNNRVD-----AALNQTMDQLD 157 >UniRef50_C9ZTC3 Ribonuclease H1 n=3 Tax=Trypanosoma brucei RepID=C9ZTC3_TRYBG Length = 301 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 69/181 (38%), Gaps = 38/181 (20%) Query: 2 LKQVEIFTDGSCLGNP------GPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAA 52 + V ++ DG+C N P G + F TN R EL A Sbjct: 119 REAVVVYVDGACRNNGSRSRERRPRAGFGGFYGDGDSRNFKFPLPAHEPQTNQRAELSAL 178 Query: 53 IVALE-ALKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 I L AL H + + +DS+Y G+ ++H W++ G+KTA V N+DLW + Sbjct: 179 IHVLRVALDSHPCYNLCVYSDSKYTVMGVNSYLHRWERNGFKTAGGGDVANIDLWSQFTK 238 Query: 110 ALGQH--------------------------QIKWEWVKGHAGHPENERCDELARAAAMN 143 +H ++ + V GHAG NE D LA A + Sbjct: 239 LRNRHLSRCAERFTMEFRFKASLAAIAARAVALQLKHVPGHAGVYGNEMADRLAVEACES 298 Query: 144 P 144 P Sbjct: 299 P 299 >UniRef50_A1D7S4 RNase H domain protein n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D7S4_NEOFI Length = 321 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 27/165 (16%) Query: 2 LKQVEIFTDGSCLGNPG---PGGYGAILRYRGREKT-----------FSAGYTRTTNNRM 47 ++ I+TDG+CLGN G G + R + + T+NR Sbjct: 146 SNEMLIYTDGACLGNGQANPRAGCGVVFREERPGRMGHFAFALELQGPTGHPRPQTSNRA 205 Query: 48 ELMAAIVALEALKEH----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDL 103 EL A I AL+ +++++TDS+YV +G T WI W + GW+T+ +PVKN DL Sbjct: 206 ELRAVIAALQFRIWPGEGWTKIVIATDSEYVVEGATSWIKGWVRNGWRTSRGRPVKNKDL 265 Query: 104 WQRLD-----AALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 W+ L AA + ++++ + N D A+ AA Sbjct: 266 WKCLLGWCEAAAKEKTKLEFWRIP----REWNAEADGWAKLAADE 306 >UniRef50_C5M9Q2 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M9Q2_CANTT Length = 283 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 60/166 (36%), Gaps = 28/166 (16%) Query: 6 EIFTDGSCLGNPGP----GGYGAILRYRGREKTFSA-------GYTRTTNNRMELMAAIV 54 ++ DG+C GN GYG + R TN R EL A Sbjct: 113 VVYIDGACRGNGNKYNSSAGYGVFYGRNNPRNVANPLDLVDRHNDYRPTNQRAELYALCQ 172 Query: 55 ALEALKEHC-------EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L + + + TDS +V IT W + W GW A V NVDL Q+ Sbjct: 173 VLVNIVNDINAGNCRLKTEIRTDSMFVINSITTWCYKWCNNGWINAKGDTVANVDLLQKN 232 Query: 108 DAAL----------GQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 + G I++ V+GH+G N+ D LA A Sbjct: 233 FNLMKSINKEYEDRGWGDIEFIHVRGHSGDYGNDEADRLANLGADR 278 >UniRef50_A5D9X8 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X8_PICGU Length = 243 Score = 128 bits (322), Expect = 5e-29, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 68/164 (41%), Gaps = 27/164 (16%) Query: 6 EIFTDGSCLGNP----GPGGYGAILRYRGREKTFSAGYTRT-----TNNRMELMAAIVAL 56 I+ DG+C N GYG + G + + + TN R EL A A+ Sbjct: 74 HIYIDGACKRNGMASQRKTGYG-VFYGNGDVRNAAVSSSNADKLSGTNQRSELRALYHAI 132 Query: 57 EALKEHCE-------VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL-- 107 + + TDS+YV + W WK GW+T + V N DL +R+ Sbjct: 133 INIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIVF 192 Query: 108 --------DAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 A +G +K E+V GHAG+ NE D+LA AA Sbjct: 193 YLKEINERLANIGLPPVKIEYVPGHAGNHGNEMADKLANKAADE 236 >UniRef50_Q07762 Ribonuclease H n=4 Tax=Trypanosomatidae RepID=RNH1_CRIFA Length = 494 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 71/212 (33%), Gaps = 75/212 (35%) Query: 6 EIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRT---TNNRMELMAAIVAL--- 56 ++ DG+C N P GYG + FS T TNNR E+ A I + Sbjct: 277 VVYVDGACSHNGTPKARAGYGGFYGSTSDSRNFSLPVPITEAQTNNRGEMRAVIHCIVQG 336 Query: 57 ------------------------EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKT 92 E + +++ TDS+YV G+T++ W G+K Sbjct: 337 FVDAGVPPAALGTSHCVEPDWELSELPQPLRRLVIYTDSRYVIDGLTRYALKWVANGFKL 396 Query: 93 ADKKPVKNVDLWQRLDAALGQHQ------------------------------------- 115 A K+PV N DLW++L + Sbjct: 397 ASKEPVLNQDLWRQLIRLRDAYNTRYAEQQHWAAATCSHASTRVPAASQSKRFHTHNTRN 456 Query: 116 -----IKWEWVKGHAGHPENERCDELARAAAM 142 I+ VKGH+ NE D LA A A Sbjct: 457 DETEGIELRHVKGHSNDYGNEMADVLAVAGAR 488 >UniRef50_C7YSN3 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YSN3_NECH7 Length = 306 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 27/169 (15%) Query: 3 KQVEIFTDGSCLGNPG---PGGYGAILRYRGREKT-----------FSAGYTRTTNNRME 48 + IF DG+CL + G G+ + R + Y TNNR E Sbjct: 133 NEFLIFVDGACLDSGGANPRAGWAIYFKPRSGNDSGMVSGRLELVGPWGDYHEHTNNRAE 192 Query: 49 LMAAIVALEALKEHC----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLW 104 L A + AL +++++T S+YV +G T+W+ W GW+T++++ VKN DLW Sbjct: 193 LRAVLAALRFRNWPGEGFNKLVIATHSEYVAKGATEWVLRWLWNGWRTSNREAVKNRDLW 252 Query: 105 QRLDAALGQ-----HQIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 Q L + ++++ + EN + +A+ AA L D Sbjct: 253 QALLGEFERLEELGLKVEFWKIP----RSENPIANRVAKQAAKEEELRD 297 >UniRef50_B6BHK3 Ribonuclease H n=2 Tax=Proteobacteria RepID=B6BHK3_9PROT Length = 272 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 63/160 (39%), Gaps = 9/160 (5%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRG--REKTFSAGYTRTTNNRMELMAAIVALEALKE 61 V I+ DG C NPG G G + E + TNN EL A +L ++ Sbjct: 103 NVTIYCDGGCTPNPGKAGSGVAVYRNDTLSELWYGLYEEMGTNNTAELGALYESLLLAQK 162 Query: 62 HC----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQ 115 V + DS Y I W +W+K+GW T +KN+++ + ++ Sbjct: 163 EAVNGNTVEIKCDSMYSINCIKTWAISWEKKGW-TKKGGEIKNLEIIKLSYHLYNSIKND 221 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 + +K H+G NE D + + + Y E+ Sbjct: 222 VTLSHIKAHSGFEGNELADRMTMYTILEKSESFVKYDKEI 261 >UniRef50_Q2JHH6 Ribonuclease H n=2 Tax=Synechococcus RepID=Q2JHH6_SYNJB Length = 169 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 6/146 (4%) Query: 7 IFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE---H 62 IFTDG C NPGPGG+ +++ + F G +T+NRMEL I AL + + Sbjct: 20 IFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGN 79 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWV 121 + +DS Q W+ W +GW+ PV+N+DL + L + Q++ W+ Sbjct: 80 GVDTIYSDSHLCVQTYNNWMERWAAQGWRRRTG-PVENLDLVEELYQLKQECPQVRVVWI 138 Query: 122 KGHAGHPENERCDELARAAAMNPTLE 147 H G NE D L A T+ Sbjct: 139 PAHQGLRWNEYVDGLVAQARARVTVP 164 >UniRef50_B6B8N1 RNA-directed DNA polymerase n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8N1_9RHOB Length = 580 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 47/142 (33%), Positives = 62/142 (43%), Gaps = 20/142 (14%) Query: 7 IFTDGSCLGNP------GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 I TDGS G P G A + ++ +E+ S TTNNRMEL A I A++++ Sbjct: 439 ISTDGSTAGKSNRDTGLAPVGAWAYINHQTKEE-RSGSDRGTTNNRMELKAVIQAIDSIP 497 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 VI+ +DS+YV + N DLWQ +I+ W Sbjct: 498 TGGAVIIRSDSKYVSNAVNN-------------GSIVTSNHDLWQEFVDVSKGREIRVVW 544 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGH G NE D LAR A Sbjct: 545 VKGHDGDAFNEAADNLARQTAE 566 >UniRef50_Q54222 Putative RNaseH n=1 Tax=Streptomyces galbus RepID=Q54222_STRGB Length = 133 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGRE---KTFSAGYTRTTNNRMELMAAIVALE 57 M ++V DG+ GNPGP G+ ++ + + R TNN EL A L Sbjct: 1 MRERVVAACDGASKGNPGPAGWAWVVSDDDERTPARWEAGPLGRATNNVAELTALERLLT 60 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLW 104 A+ + + DSQY + +T W+ WK+ GWKTA KPV N DL Sbjct: 61 AVDPDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANQDLV 107 >UniRef50_A8ZTA6 Ribonuclease H n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTA6_DESOH Length = 230 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 65/140 (46%), Gaps = 15/140 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVA-LEALKEHC 63 +++FTDG+ GNPGP G G +L Y +KT S TNN EL A A LE + Sbjct: 100 IQVFTDGAASGNPGPAGIGVLLIYGNSQKTISRYIGHATNNIAELKAIEAALLEIKNKKL 159 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVK 122 V L TDS Y +T WK + KNV+L + + +K VK Sbjct: 160 PVRLFTDSAYSLGALT---LGWKAQ----------KNVELIAGIQKLMRTFSDLKIFKVK 206 Query: 123 GHAGHPENERCDELARAAAM 142 GHAG ENE D LA A Sbjct: 207 GHAGMAENETADRLATEAIQ 226 >UniRef50_Q8SD07 PHIKZ155 n=2 Tax=phiKZ-like viruses RepID=Q8SD07_9CAUD Length = 482 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 70/182 (38%), Gaps = 41/182 (22%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT------------------ 42 M + ++TDGS G G+G S T+ Sbjct: 1 MSDGMVLYTDGSFR--QGKAGWGIHGYTYENVAMKSKAATKQQPTAKGYLDVGADETCTV 58 Query: 43 --------------TNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWK 86 TNN EL AAI A + E + + DS+YVR+G+T ++ W Sbjct: 59 LNYIDAFGSVTNNPTNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWI 118 Query: 87 KRGWKTADKKPVKNVDLWQRLDAALGQ-----HQIKWEWVKGHAGHPENERCDELARAAA 141 K W +D PV N DLW+++ + + +WV+GH G NE+ D A+ + Sbjct: 119 KSNWIKSDGTPVANQDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAKLGS 178 Query: 142 MN 143 Sbjct: 179 GQ 180 >UniRef50_A6GJD7 DNA polymerase III, epsilon subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJD7_9DELT Length = 234 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 69/153 (45%), Gaps = 20/153 (13%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 + I TDG+C GNPGP G G + S TNN EL A + ALEA+ + + Sbjct: 93 IIIHTDGACSGNPGPAGLGVHIVRPDSITEISEFIGDATNNVAELKAILRALEAITDEEK 152 Query: 65 ---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEW 120 + L TDS + + I WK + KNV L +++ L + I+ Sbjct: 153 ERRIHLYTDSGWSLGVL---IGGWKAK----------KNVALIEKIKTKLPELPNIELLK 199 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 VKGHAG NE D LA A +ED+ + Sbjct: 200 VKGHAGLEGNEEADALATKAVR---IEDSSIKQ 229 >UniRef50_Q6FPF4 Similar to uniprot|Q04740 Saccharomyces cerevisiae YMR234w RNH1 ribonuclease H n=1 Tax=Candida glabrata RepID=Q6FPF4_CANGA Length = 403 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 31/168 (18%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG----YTRTTNNRMELMAAIVALE 57 +++V + DGS LGN Y +++ TNNR E+MA AL+ Sbjct: 239 VQKVTTYCDGSSLGNGTHASKAGYGVYFPHNPSYNISKPLLIGPQTNNRAEIMAVSEALD 298 Query: 58 ALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL--- 107 + E + TDS+YV + + ++ ++ +T + N DL + L Sbjct: 299 TIWNDLTCHGNKVEYTIKTDSEYVSKLLNDRYSSYTEKEMET-----LPNKDLVKPLIEK 353 Query: 108 ------------DAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 D +K EWVKGHAG P NE D LAR A Sbjct: 354 YVKVKTYYDVNKDKFSNDKGLKIEWVKGHAGEPGNEMADLLARRGADQ 401 >UniRef50_A2R215 Contig An13c0090, complete genome n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R215_ASPNC Length = 278 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 16/148 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT-----RTTNNRMELMAAIVAL--E 57 + I DG+C N G + Y G + + + + T+ EL A AL + Sbjct: 131 IVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACERALLGD 190 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 + V++ +DS+YV +G+T+WI WK W TA PV N + ++++D+ + + Sbjct: 191 GEERLHTVVIKSDSEYVVRGMTEWIFKWKANDWTTAKGLPVANQEHFKKIDSLVESLENE 250 Query: 116 ---IKWEWVKGHAGHPENERCDELARAA 140 +++ V N+ D LA +A Sbjct: 251 QVPVQFWQVP----REFNQEADRLAASA 274 >UniRef50_A8XYS2 C. briggsae CBR-RNH-1.3 protein n=2 Tax=Caenorhabditis briggsae RepID=A8XYS2_CAEBR Length = 150 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 18/144 (12%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HCE 64 I TDG+ N R +++ S+ Y TNNR EL A A + Sbjct: 13 INTDGATSNN-----------DRNLDRSGSSAYGNQTNNRYELEAIREATRIASQVPDRH 61 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-----HQIKWE 119 + ++TDSQY + W NW++ GW+T+ +PVKN +L + +D + ++ + Sbjct: 62 ISINTDSQYAVDSLNTWKSNWEQNGWRTSRGEPVKNQELIRDIDRNINNLRDSGKKVTLK 121 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 + GH+ N D LAR AA + Sbjct: 122 HISGHSNDYHNTEADRLARQAAAS 145 >UniRef50_Q046W4 RNase HI n=5 Tax=Lactobacillus RepID=Q046W4_LACGA Length = 251 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 17/146 (11%) Query: 6 EIFTDGSCLGNP----------GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVA 55 I+TDG + ++ ++G S G TNN+MEL+ I A Sbjct: 97 TIYTDGGSRNTGVHKGGHVNKTDKAAWAYLIEWQGGRTYGSGGEFGATNNKMELLGLINA 156 Query: 56 LEALKE----HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 LE L E ++ DSQYV GI + WI WKKRGWK A+ P+ N W++LD+ Sbjct: 157 LEKLLELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRANG-PLINASEWKKLDSL 215 Query: 111 LGQH-QIKWEWVKGHAGHPENERCDE 135 LG + W KGHA + N D Sbjct: 216 LGHFSDSTFSWTKGHADNEGNVFVDH 241 >UniRef50_Q5MCR4 Ribonuclease HI n=1 Tax=Leishmania major RepID=Q5MCR4_LEIMA Length = 381 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 72/215 (33%), Gaps = 78/215 (36%) Query: 6 EIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRT---TNNRMELMAAIVA---- 55 ++ DG+C N GYG + FS T TNNR E+ A I A Sbjct: 163 VVYVDGACSHNGTSQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIHAIVQA 222 Query: 56 ----------LEAL--------------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWK 91 LEA + +I+ TDS+YV G+T++ W + G+ Sbjct: 223 FVDAGAPADALEATHLVDPSAWRLVDLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFV 282 Query: 92 TADKKPVKNVDLWQRLDAALGQHQ------------------------------------ 115 + +PV+N DLW++L ++ Sbjct: 283 LSTNEPVQNQDLWRQLIRLRDRYNTLYARQQHDQQRACQWGDGHHSEADLAQLVRYTCQN 342 Query: 116 --------IKWEWVKGHAGHPENERCDELARAAAM 142 ++ V+GH+ NE D LA + Sbjct: 343 ARNDKSEGVELIHVRGHSKVHGNEMADSLAVMGSR 377 >UniRef50_B9JEK9 Putative uncharacterized protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JEK9_AGRRK Length = 165 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 11/147 (7%) Query: 5 VEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + +FTDGS GG+ A+ R + RT NN MEL+A + A E L ++ Sbjct: 14 LHVFTDGSFDPVSKTGGWAFAVFRGSAQVFAAFGSEARTANNAMELLAILQACEWLADNA 73 Query: 64 ---EVILSTDSQYVRQGITQWIHNWKKRGWKTA------DKKPVKNVDLWQRLDAALGQH 114 E ++ TDS Y G +W H W+ W+ + V + W+ +D L Q+ Sbjct: 74 AGEEAVIHTDSAYAVNGCIRWRHIWRSNKWRKRTPNGQGRSRSVADAAYWRAIDVLLNQN 133 Query: 115 Q-IKWEWVKGHAGHPENERCDELARAA 140 IK +W KGH G NE D LA+ Sbjct: 134 PTIKVKWCKGHVGVEGNEVADALAQRG 160 >UniRef50_A5DAG3 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii RepID=A5DAG3_PICGU Length = 152 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 21/143 (14%) Query: 21 GYGAILRYRGREKT----FSAGYTRTTNNRMELMAAIVALEALKE-------HCEVILST 69 GYG S T+ R EL A A+ + + E ++ T Sbjct: 8 GYGVFYGDGDERNVAVALSSVDDIPGTSQRAELHALDHAVSNIADFLDEYNPDKEYVIHT 67 Query: 70 DSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----------IKWE 119 DSQYV + T WI WK GW T+ K V N DL +R+ + L + +K E Sbjct: 68 DSQYVIKATTVWIKKWKSNGWTTSYGKSVANQDLIKRIFSNLNRINKELEDNGFSAVKLE 127 Query: 120 WVKGHAGHPENERCDELARAAAM 142 V GH+G NE D+LA A Sbjct: 128 HVAGHSGDYGNEMADQLANEGAD 150 >UniRef50_D0NEW7 Ribonuclease, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NEW7_PHYIN Length = 317 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 3 KQVEIFTDGSCLGNPGP---GGYGAILRYRGR-EKTFSAGYTRTTNNRMELMAAIVALEA 58 K + F DGS L N GY I + + R TNNR E MAA+ A++ Sbjct: 159 KTLVAFCDGSALENGRRKCRAGYACIFPHCEQWNVAKQLVEDRATNNRAEYMAALEAMKR 218 Query: 59 LK-----EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ 113 + + +DS + + +T+W+ W+K W +D PV+N DL + L A G Sbjct: 219 ANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLVAEKGS 278 Query: 114 HQIKWEWVKGHA-----GHPENERCDELARAAAMN 143 +I+W VK H N+ D AR AA++ Sbjct: 279 RRIRWTHVKAHTRKQDWRSKWNDVADNAARNAALS 313 >UniRef50_Q5UPY1 Probable ribonuclease H n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RNH_MIMIV Length = 229 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 14/143 (9%) Query: 15 GNPGPGGYGAILRY--RGREKTFSAGYTRT--TNNRMELMAAIVALEALKEH-----CEV 65 GN G G I + G + S + + TN R EL A + A++ + ++ C+V Sbjct: 23 GNGRVGASGGIGIHFPNGELQDISLEFDKGCCTNQRTELYAILYAIQYIDDNFDLNKCKV 82 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHA 125 ++ TDS Y IT+W + W +P+ N + Q + I +EWV+ H Sbjct: 83 MIKTDSTYSVNSITKWAEGHSRNDWCKRTGEPIANREFIQEIYEYYQNFNIDFEWVEAHT 142 Query: 126 GHPE-----NERCDELARAAAMN 143 G + N + D LA +AA Sbjct: 143 GQTDSESIANAQADFLANSAAKR 165 >UniRef50_C2KDF2 Ribonuclease n=16 Tax=Lactobacillus RepID=C2KDF2_9LACO Length = 267 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 17/144 (11%) Query: 8 FTDGSCLGNP----------GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 +TDG + ++ + ++ S G TNN+ME A I AL+ Sbjct: 115 YTDGGTRNTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINALK 174 Query: 58 ALKE----HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 L E ++ DSQYV I + W+ WKKRGW+ + P+ NV WQ LD L Sbjct: 175 KLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGWRRSSG-PLANVAEWQELDRLLK 233 Query: 113 QH-QIKWEWVKGHAGHPENERCDE 135 + +EW KGHA + NE D Sbjct: 234 EFPDSTFEWTKGHANNRGNEFVDH 257 >UniRef50_D0NEW3 Putative uncharacterized protein n=2 Tax=Phytophthora infestans T30-4 RepID=D0NEW3_PHYIN Length = 281 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 16/149 (10%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSA----GYTRTTNNRMELMAAIVALEA 58 + F DGS L N A R ++ + TNNR E MAA+ AL+ Sbjct: 133 DSMVAFCDGSALRNGQRDCDAAYARVFPHDQASNVVRTLNGPWATNNRAEYMAALAALQW 192 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 ++ D + +T WI+ W+ GW T + VKN D+ +L G ++ W Sbjct: 193 ARDE-------DPSMLINSMTNWIYKWQNNGWTTQNGTEVKNRDILGQLLDEQGNREVIW 245 Query: 119 EWVKGHAGH-----PENERCDELARAAAM 142 V+ H G+ N+ D AR AA Sbjct: 246 RHVRAHTGNKDWESYWNDIADTKARQAAE 274 >UniRef50_Q5BXL7 SJCHGC09332 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BXL7_SCHJA Length = 230 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 7/131 (5%) Query: 21 GYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALKEH--CEVILSTDSQYVR 75 Y G ++ TNNR E+ A I A++ + + TDS++ + Sbjct: 96 AMAGYGVYWGPSHPWNVSERLEGEQTNNRAEIEAVICAIKQAHASGITHLGIVTDSKFTQ 155 Query: 76 QGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWVKGHAGHPENERC 133 T+W W + WK A+ + K + +RL + + +I W V+GH G NE Sbjct: 156 NCATEWGKRWARNSWKLANGEDAKLKEPVKRLLELIAESGIEITWHHVRGHKGVHGNEEA 215 Query: 134 DELARAAAMNP 144 D LA A P Sbjct: 216 DCLANIGADKP 226 >UniRef50_Q9XVE6 Protein C04F12.9, confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q9XVE6_CAEEL Length = 139 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%) Query: 8 FTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTR--TTNNRMELMAAIVALEALKE-- 61 +TDGS LGN G G + K S Y TNNR EL A A + ++ Sbjct: 6 YTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMARDVP 65 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-----I 116 V + TDS+ + +T+W NWK G+KT+ + VKN DL + +D + + + Sbjct: 66 DSHVRIHTDSKNAKDSVTKWNDNWKSNGYKTSSGQDVKNQDLIRDIDRNVQALKHSGKTV 125 Query: 117 KWEWVKGHAGH 127 ++E V+GH+ Sbjct: 126 EFEHVRGHSNR 136 >UniRef50_A9CET6 Ribonuclease H n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CET6_AGRT5 Length = 157 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 11/149 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG-YTRTTNNRMELMAAIVALEAL 59 M + IFTDGS GG+ ++ G + + G +NN E++A + A+ + Sbjct: 1 MSDALHIFTDGSFDDATRSGGWAFVVHEGGDQVHSATGKAAGASNNSFEVLAVLNAMSWV 60 Query: 60 KEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKT------ADKKPVKNVDLWQRLDAA 110 V L TD+ +V +G ++ W+ GWK A ++P+ + ++WQ+LD Sbjct: 61 AAEAPTRDVTLWTDAVHVIEGCRRYRAIWRNNGWKRITPNQRARRRPIPDSEIWQQLDKL 120 Query: 111 LGQHQ-IKWEWVKGHAGHPENERCDELAR 138 L +H + EW KGH+G NE D LAR Sbjct: 121 LERHPHVAVEWCKGHSGLVGNEHADALAR 149 >UniRef50_C5DHG7 KLTH0E04202p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DHG7_LACTC Length = 381 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 20/161 (12%) Query: 1 MLKQVEIFTDGSCLGNP---GPGGYGAIL-RYRGREKTFSAGYTRTTNNRMELMAAIVAL 56 +++ ++ DGS L N GYG + G + TNNR E+ A AL Sbjct: 218 VVQDCNVYCDGSALSNGTRSSRAGYGVYFEQDGGNNISEPLLEGAQTNNRAEIQAVSSAL 277 Query: 57 EAL-------KEHCEVILSTDSQYVRQGITQWIHNW---KKRGWKTADK------KPVKN 100 + + K++ + TDS+YV + + + K +D K VK Sbjct: 278 DQIWTNLTANKKNLRYQIKTDSEYVAKLLNDRYMGYSVQKLEQLPNSDLIAPLVQKFVKV 337 Query: 101 VDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAA 141 ++ + G + EWV+GHAG NE+ DELAR A Sbjct: 338 KKFYEINEEVFGSSKFHIEWVRGHAGEAGNEKADELARLGA 378 >UniRef50_A7EQD5 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7EQD5_SCLS1 Length = 319 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%) Query: 4 QVEIFTDGSCLGNPG---PGGYGAI------LRYRGREKTFSAGYTRTTNNRMELMAAIV 54 ++ I+TDG+CL N GG G I +++R + T+NR EL A I Sbjct: 141 EILIYTDGACLSNGLSNLRGGCGFIASPTHKVKFRLENTGPTDEPHPQTSNRAELRAVIA 200 Query: 55 ALEA-------LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 AL+ L ++++TDS+YV G T+ I W RGW+T+ KPVKN DLW++L Sbjct: 201 ALQYHYWQGDCLGSWTRLVIATDSEYVVLGATERIRGWITRGWRTSAGKPVKNQDLWKKL 260 Query: 108 DAALGQHQ-------------IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + + + + + N+ D A+ A ++ Sbjct: 261 IHQIQKLDEPSRCIYPPHGTSVSFWRIP----REWNQDADVEAKKGAELEDVQ 309 >UniRef50_C5R9S8 Ribonuclease H n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R9S8_WEIPA Length = 232 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 18/158 (11%) Query: 3 KQVEIFTDGSCLGNPG----------PGGYGAILRYRGR----EKTFSAGYTRTTNNRME 48 Q IFTDG G+ + + T S TNN ME Sbjct: 74 NQYYIFTDGGSRNTGNTAGGHVKATDKAGWAIAIYHGSNLNEPVYTDSGADWGRTNNEME 133 Query: 49 LMAAIVAL-EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 ++A I AL + K V + +DS+YV +T W++NW GW+ + + + N+ WQ++ Sbjct: 134 MLALINALLQTAKVSTPVTIVSDSKYVLDTVTNWMYNWAANGWRKSSGE-IANLKAWQQI 192 Query: 108 DAALGQH--QIKWEWVKGHAGHPENERCDELARAAAMN 143 A + ++ + WVKGHA N D L A Sbjct: 193 YALIKPLAARLSFIWVKGHATSHGNITVDHLLNDAMDQ 230 >UniRef50_B8MPL2 Ribonuclease H1, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MPL2_TALSN Length = 346 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 48/189 (25%) Query: 4 QVEIFTDGSCLGNPG---PGGYGAILRYRGRE---------------------------- 32 Q I+TDG+CL N G G R + Sbjct: 154 QFLIYTDGACLDNGGLSPQAGCAFYFRPPAEDTQDGRRHNRRRPGTMEFPPPSQGYTSFH 213 Query: 33 ---KTFSAGYTRTTNNRMELMAAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNW 85 + + T+NR EL A I AL E ++++TDS+YV +G T W+ W Sbjct: 214 LEKRGPFGDPSSQTSNRAELRAVIGALRFRVWQGEGFRTLVIATDSEYVVEGATNWVKGW 273 Query: 86 KKRGWKTADKKPVKNVDLWQRLDAALGQH-----QIKWEWVKGHAGHPENERCDELARAA 140 + W+T PVKN DLW+ L + +H ++ + + N D+ A+ A Sbjct: 274 LRNNWRTRSG-PVKNKDLWEALLGEIERHHDKGLKVLFWRIP----RELNMVADQKAKIA 328 Query: 141 AMNPTLEDT 149 A ++ Sbjct: 329 AQEEPASES 337 >UniRef50_A8NLY2 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NLY2_COPC7 Length = 738 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 7/140 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTR----TTNNRMELMAAIVALE 57 ++V ++TDGSC N + G E + +NN EL A + A++ Sbjct: 303 RQEVSVYTDGSCSANGTASARAGSGIWYGPEDNRNRALRLPDKLASNNAGELAAILAAIQ 362 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + + + +DS+Y IT+ I W G+ KP+ + + + A+ I Sbjct: 363 DNQSAKNLHVISDSKYAIDAITKHIGRWADEGFTRVKNKPIVHALFGELVTASSA---IT 419 Query: 118 WEWVKGHAGHPENERCDELA 137 E VKGH+G N+ D LA Sbjct: 420 LEKVKGHSGDAGNDGADRLA 439 >UniRef50_Q03P82 RNase HI n=15 Tax=Lactobacillus RepID=Q03P82_LACBA Length = 264 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 17/155 (10%) Query: 10 DGSCLGNPGPGG----------YGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 DG G + + + T SAG +NNRME+MA AL+ L Sbjct: 79 DGGSRNTGNVAGGHVKTGDKAAWAYRIELPDQVVTGSAGEFGASNNRMEIMAFRNALQRL 138 Query: 60 ----KEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 K + DS+YV +TQ W+ WK+RGW+ + P+ N +LWQ +D L Q Sbjct: 139 VALEKTQESIQFILDSRYVLNAVTQGWLAGWKRRGWRRSAG-PLANAELWQDVDRLLPQF 197 Query: 115 -QIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 Q+ ++W KGHA + N D L T+++ Sbjct: 198 SQLSYQWTKGHATNQGNVFVDHLLNQTMDQMTVDE 232 >UniRef50_Q2HHV6 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=Q2HHV6_CHAGB Length = 786 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 18/137 (13%) Query: 4 QVEIFTDGSCLGNPGP---GGYGAILRYRGR------EKTFSAGYTRTTNNRMELMAAIV 54 ++ ++ DG+C N P GG+ + EK + T+NR EL AAI Sbjct: 404 KLLLYIDGACTDNGQPNPRGGWAVVYGPTDDASGRLEEKGPFGHESVPTSNRAELRAAIA 463 Query: 55 ALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 AL + ++++TDS YV G T W W GW+T + VKN DLW+ L Sbjct: 464 ALRLRNWEQDGFDGMVIATDSSYVVDGATGWTQGWTVNGWRTQSGRAVKNKDLWELLLGE 523 Query: 111 LGQ-----HQIKWEWVK 122 + + QI + + Sbjct: 524 VERWADRGFQITFWKIP 540 >UniRef50_C7YX62 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YX62_NECH7 Length = 667 Score = 114 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 21/134 (15%) Query: 3 KQVEIFTDGSCLGNPG---PGGYGAILRYRGREKTFS--------------AGYTRTTNN 45 +V +TDG+C+ N G+ + G ++ S + T+N Sbjct: 278 NRVLAYTDGACINNGQLEPRAGWAVVFGKPGSDQEGSQNVVSSRLENEGPFGDDSVATSN 337 Query: 46 RMELMAAIVALEALKEH----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNV 101 R EL AAI AL H ++++TDS YV QG T W NW ++GW T VKN Sbjct: 338 RAELRAAIAALRVCDWHDEGFKNIVIATDSSYVVQGATSWAKNWVRKGWTTRVGGNVKNK 397 Query: 102 DLWQRLDAALGQHQ 115 DLW L + + + Sbjct: 398 DLWDLLLGEVERLK 411 >UniRef50_Q4D6K7 Ribonuclease H1, putative n=2 Tax=Trypanosoma cruzi RepID=Q4D6K7_TRYCR Length = 323 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 43/179 (24%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYR-------GREKTFSAGYT---RTTNNRMELMAA 52 + VE++ DG+C N G G + R + FS TNNR EL A Sbjct: 141 EAVEVYVDGACRAN----GKGKLSRGGYGGYYGANDTRNFSLPIPIDEPQTNNRAELYAV 196 Query: 53 IVALEALKEHC---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 I L E + + +DS Y QG ++H W + G+ + V N DLW+ L+ Sbjct: 197 IYVLRTALEAESCYNLRVFSDSMYTIQGADFYMHKWLQNGFCGTNGSTVLNCDLWKSLNT 256 Query: 110 ALGQHQ--------------------------IKWEWVKGHAGHPENERCDELARAAAM 142 QH ++ V+GHAG NE D LA A+ Sbjct: 257 MRLQHATRYGEWLVSQFGLLPVVASTLAKKLALQLVHVRGHAGVYGNEMADHLAVMGAL 315 >UniRef50_B5ZRJ7 Ribonuclease H n=6 Tax=Rhizobium RepID=B5ZRJ7_RHILW Length = 177 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 11/150 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYTRTTNNRMELMAAIVALEALKEHC 63 + +F DG G GG+ + E G ++NN MEL A + A + Sbjct: 24 LHLFADGCYEPGSGHGGWSFVAYRDAVEIASGFGGAEDSSNNSMELTAVLRAAMWINSQT 83 Query: 64 E---VILSTDSQYVRQGITQWIHNWKKRGWKTA------DKKPVKNVDLWQRLDAALGQH 114 I+ +DS Y +G H WK GWK + ++ + N +LW+ +D L Q+ Sbjct: 84 AGEAAIIWSDSIYAVKGCNSRRHIWKNNGWKKSSPNGQGRRRTIDNAELWKAVDLQLSQN 143 Query: 115 Q-IKWEWVKGHAGHPENERCDELARAAAMN 143 + W KGH+G NER D LA ++ Sbjct: 144 ALVTIAWCKGHSGVVGNERADALADRGRLS 173 >UniRef50_A7TG71 Putative uncharacterized protein n=3 Tax=Fungi/Metazoa group RepID=A7TG71_VANPO Length = 397 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 22/162 (13%) Query: 3 KQVEIFTDGSCLGNP---GPGGYGAILRYRGREKTFSA---GYTRTTNNRMELMAAIVAL 56 +V ++ DGS L N GYG + + ++ TNNR E+ A AL Sbjct: 235 DKVRVYCDGSSLHNGTAIARAGYGVYFDHDNYKDLNASERLNTGAQTNNRGEIEAVSNAL 294 Query: 57 EALKEH-------CEVILSTDSQYVRQGIT---QWIHNWKKRGWKTAD------KKPVKN 100 +++ + E + TDS+YV + + + I K AD +K VK Sbjct: 295 DSIYDSLSNKGNKAEFEIWTDSEYVMKSLNDNYETIAKQKGESVANADLVMPMIEKYVKV 354 Query: 101 VDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAM 142 ++ + K +WVKGH G NE D+LA+ AM Sbjct: 355 KKYYEVNKDSYPGTDFKIKWVKGHEGEYGNEMADQLAKQGAM 396 >UniRef50_A1CQB1 Reverse transcriptase, RNaseH, putative n=1 Tax=Aspergillus clavatus RepID=A1CQB1_ASPCL Length = 208 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 24/158 (15%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-----TRTTNNRMELMAAIVALE 57 K + + DG+CL N ++ Y G F+ G R TN EL A + AL Sbjct: 53 KSIVVAVDGACLYNGRAQARASLGVYWGANNYFNTGIVLDPTDRQTNQVAELQACLEALG 112 Query: 58 ALKE----------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L + V++ +DS+Y+ +GIT+W +W+ + W+ PV N++ ++ + Sbjct: 113 NLDDVSCAHPAGDRLSTVVIKSDSEYMVRGITEWFPSWRNQRWRNYRGMPVTNLEYFRMI 172 Query: 108 DAAL-----GQHQIKWEWVKGHAGHPENERCDELARAA 140 D + +K+ V N D LA+ A Sbjct: 173 DEYIEDWEAQGLSVKFWLVP----RSMNRMADGLAKDA 206 >UniRef50_A5D9X9 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X9_PICGU Length = 264 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 63/164 (38%), Gaps = 25/164 (15%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKT-----FSAGYTRTTNNRMELMAAIVALEALK 60 +IF DG+ G+ GYG + N R EL A I ++ Sbjct: 60 KIFIDGAFQGDQ--CGYGVWYGDDDPRNAAVPLFQAKEELPLNNQRAELRAMIHVFRNIQ 117 Query: 61 EH---------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL 111 + E ++ TDSQ + +T W WKK GWKT + + N DL L Sbjct: 118 QEIESNNGIPLKEYVILTDSQATIKALTIWSVKWKKNGWKTTKGEIIANKDLISEAVELL 177 Query: 112 ---------GQHQIKWEWVKGHAGHPENERCDELARAAAMNPTL 146 ++ E V GHAG NE D+LA AA T+ Sbjct: 178 ESLEQYYRTSDLRLAIEHVYGHAGVHGNEEADKLATFAASLTTI 221 >UniRef50_C9DGJ5 Putative RNaseH ribonuclease n=1 Tax=Deftia phage phiW-14 RepID=C9DGJ5_9CAUD Length = 177 Score = 112 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 67/145 (46%), Gaps = 14/145 (9%) Query: 2 LKQVEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAG--YTRTTNNRMELMAAIVAL 56 + V ++TDGS N P G+ ++ G G ++NNR E M I A Sbjct: 4 VTDVHVYTDGSSKHNGKPECVAGWSMVIPNLGDCMYARYGQLAPPSSNNRGEAMGVIAAA 63 Query: 57 E--ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ- 113 E A ++ TDSQY+++ T+W W + VKN+D+ L + + Sbjct: 64 EMFARAPDFRAVIYTDSQYIQKACTEWRGKWALTQYDG-----VKNIDMLLPLFNIIDRS 118 Query: 114 -HQIKWEWVKGHAGHPENERCDELA 137 ++ K WVKGHAG P NE D+ A Sbjct: 119 INKPKILWVKGHAGDPGNELADQYA 143 >UniRef50_Q6CVD1 KLLA0B12958p n=1 Tax=Kluyveromyces lactis RepID=Q6CVD1_KLULA Length = 370 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 19/155 (12%) Query: 7 IFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL---- 59 ++ DGS N GYG R TNNR E+ A AL + Sbjct: 213 VYCDGSSFNNGFEGARAGYGIYFEGEDRRIARPLTNGNQTNNRAEISAVSDALSDIWDNL 272 Query: 60 ---KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKP-----VKNVDLWQRLD--- 108 K+ + ++ TDS+YV + + + ++ + + A V+N ++ Sbjct: 273 KEGKKLNKYVIHTDSEYVSKMLNDYANHVDPQQLQKAPNADLIVPMVQNYTKVKQFYEVN 332 Query: 109 -AALGQHQIKWEWVKGHAGHPENERCDELARAAAM 142 + + ++ +WVKGHAG P NE D+LA+ AM Sbjct: 333 KDVVKDNGLEVKWVKGHAGVPGNEIADQLAKEGAM 367 >UniRef50_Q04740 Ribonuclease H n=6 Tax=Saccharomycetaceae RepID=RNH1_YEAST Length = 348 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 27/166 (16%) Query: 2 LKQVEIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGY--TRTTNNRMELMAAIVAL 56 K + ++ DGS GN GYGA E+ S TNNR E+ A AL Sbjct: 185 NKSMNVYCDGSSFGNGTSSSRAGYGAYFE-GAPEENISEPLLSGAQTNNRAEIEAVSEAL 243 Query: 57 EAL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADK------------KP 97 + + KE + TDS+YV + + + + + K Sbjct: 244 KKIWEKLTNEKEKVNYQIKTDSEYVTKLLNDRYMTYDNKKLEGLPNSDLIVPLVQRFVKV 303 Query: 98 VKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 K +L + G+ QI EWVKGH G P NE D LA+ A Sbjct: 304 KKYYELNKECFKNNGKFQI--EWVKGHDGDPGNEMADFLAKKGASR 347 >UniRef50_A8PCJ1 RNase H family protein n=2 Tax=Brugia malayi RepID=A8PCJ1_BRUMA Length = 255 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 23/170 (13%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTF-SAGYTRTTNNRMELMAA-IVALEALK-EH 62 ++ DGS GG G S ++ TN R E+ A + AL+A Sbjct: 74 LVYCDGSFDWTLRKGGIGIFWSPNDERNAHLSLTGSKLTNIRAEIQAVSLAALQACSLNF 133 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 +I+ TDSQ+V + I W+ W+ WK AD K ++N+D Q+L +++ E Sbjct: 134 DRIIIKTDSQFVVKVINSWLSRWRSNEWKKADGKQIENMDDIQKLSRYTEMIKMRVEHTY 193 Query: 123 GHAGHP--------------------ENERCDELARAAAMNPTLEDTGYQ 152 GH + N D L+R A P + D ++ Sbjct: 194 GHQKYDERKELEESWDAMSCDERDRCGNFHSDRLSRLAVDQPMMTDEQFE 243 >UniRef50_C8PB59 Ribonuclease HI n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PB59_9LACO Length = 216 Score = 111 bits (277), Expect = 9e-24, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 19/149 (12%) Query: 4 QVEIFTDGSCLGNP----------GPGGYGAILRYRGREKTFSA--GYTRTTNNRMELMA 51 + ++TDG C N + +R + + G TNN+MEL Sbjct: 60 DIIVYTDGGCRNNGVHKGGHVKKDDKAAWAYTIRCKDEACSIDGVGGERGATNNQMELTG 119 Query: 52 AIVALEALK----EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 I A+E L ++ ++ DS+YV + I + WK GW+ V N D WQ+L Sbjct: 120 LIEAIEMLIKKNWQNKKIRFCLDSKYVIENI-DRLSTWKAAGWRNTSG-LVANKDKWQKL 177 Query: 108 DAALGQHQIK-WEWVKGHAGHPENERCDE 135 + L + K + WVKGHA N D Sbjct: 178 EPLLQECTNKSFVWVKGHADSEGNNYVDR 206 >UniRef50_UPI0001908521 putative ribonuclease HI n=3 Tax=Rhizobium etli RepID=UPI0001908521 Length = 212 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 13/144 (9%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSA--GYTRTTNNRMELMAAIVALEALKEH 62 + IF DG GG+ + YR + S G + NN MEL A + A + Sbjct: 60 LHIFVDGCYEPGSQHGGWAFV-TYRDAVEIASGFGGVQESANNSMELTAVLKAAIWINSE 118 Query: 63 CE---VILSTDSQYVRQGITQWIHNWKKRGWK------TADKKPVKNVDLWQRLDAALGQ 113 + +DS Y +G H WK GWK A ++ + N +LW+ +D L Q Sbjct: 119 AAGEAATIWSDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARRRTIDNAELWKAVDLQLSQ 178 Query: 114 HQ-IKWEWVKGHAGHPENERCDEL 136 + + W KGH+G NER D L Sbjct: 179 NALVTVTWCKGHSGIAGNERADAL 202 >UniRef50_A8X0Y9 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8X0Y9_CAEBR Length = 146 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKEH 62 ++TDGSC P Y G+ + +NR EL AA A++ Sbjct: 10 HVYTDGSCRNQGTPNAQAGYGVYWGQGHANNRSGTVSGHQDSNRAELRAAQQAIQTASRQ 69 Query: 63 --CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 V + +DS YVR I + P N DL Q +++ + Sbjct: 70 GYSGVNIHSDSHYVRNAI---------NNSDQFQRAPATNRDLMQSINSMKSNVSVSAHH 120 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGH+GH N + LA A A Sbjct: 121 VKGHSGHHGNSQAHSLASAGAK 142 >UniRef50_A1D376 Reverse transcriptase, RNaseH, putative n=3 Tax=Trichocomaceae RepID=A1D376_NEOFI Length = 221 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 25/159 (15%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-----AGYTRTTNNRMELMAAIVAL 56 + + DG+C N G + + G + G TN EL A + AL Sbjct: 51 SDHIVVAVDGACSKNGKDGARSSYGVFWGHNNVLNTAVPVEGEGHHTNQVAELRACMRAL 110 Query: 57 ------EALKEH-----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 ++L E V++ +DS+Y+ +G+T+W+ WK+ GWK + V N + ++ Sbjct: 111 LDVVHVKSLFEDQGITLSAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSRGLDVANWEHFK 170 Query: 106 RLDAALGQHQ-----IKWEWVKGHAGHPENERCDELARA 139 ++ + +K+ V N D +A+A Sbjct: 171 AIERLTEDLERQKLILKFWHVPRRN----NRDADTMAKA 205 >UniRef50_A2QI95 Function: the ribonuclease H n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QI95_ASPNC Length = 299 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 30/164 (18%) Query: 4 QVEIFTDGSCLGN------PGPGGYGAILRYRGREKTFSAG-------------YTRTTN 44 Q ++T G+C N G+ + R + + + G Y R T+ Sbjct: 121 QCLVYTAGACHDNWKGDENYAKAGWSFVYRPQNPSRNITGGVAGRLEMTGPTKVYHRQTS 180 Query: 45 NRMELMAAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKN 100 R EL A I AL+ L ++++TDS YV G T WI W +GW++A KP+KN Sbjct: 181 TRAELRAVIAALKYLSHDGNTFDSLVIATDSSYVVNGATLWIRKWLSKGWRSAIGKPIKN 240 Query: 101 VDLWQRLDAA----LGQHQIKWEWVKGHAGHPENERCDELARAA 140 DLW+ L + + + W H N+ LA A Sbjct: 241 KDLWEALLKEVRCWYEEGREIYLW---HIDRLHNQDAVRLANWA 281 >UniRef50_Q2GRU5 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2GRU5_CHAGB Length = 755 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 18/129 (13%) Query: 5 VEIFTDGSCLGNPG---PGGYGA-----------ILRYRGREKTFSAGYTRTTNNRMELM 50 V I TDG+CL N G+ ++ + T+NR EL Sbjct: 583 VLIRTDGACLENGQANPKAGWAFWHGVNDEGTQLVVSASLEARGPFGAAAAQTSNRAELR 642 Query: 51 AAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR 106 A I AL E + +TDS+YV +G T+W+ W + GWKT+ + VKN DLW+ Sbjct: 643 AVIAALRFRHWPGEGFDTFVAATDSEYVVEGATKWVRTWIRNGWKTSAGRDVKNKDLWEA 702 Query: 107 LDAALGQHQ 115 L + + Sbjct: 703 LLGEVERFS 711 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A6T512 Ribonuclease H n=155 Tax=Bacteria RepID=RNH_KLEP7 221 4e-57 UniRef50_A7MI34 Ribonuclease H n=2 Tax=Cronobacter RepID=RNH_ENTS8 220 2e-56 UniRef50_Q65S82 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_... 213 2e-54 UniRef50_B4EUG3 Ribonuclease H n=13 Tax=Bacteria RepID=RNH_PROMH 213 2e-54 UniRef50_Q5E3G5 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_VIBF1 210 1e-53 UniRef50_Q7N807 Ribonuclease H n=8 Tax=Gammaproteobacteria RepID... 207 7e-53 UniRef50_A1AT66 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_PELPD 200 1e-50 UniRef50_B8DIU7 Ribonuclease H n=24 Tax=cellular organisms RepID... 200 1e-50 UniRef50_B1KHK0 Ribonuclease H n=21 Tax=Bacteria RepID=RNH_SHEWM 199 3e-50 UniRef50_C6XRA4 Ribonuclease H n=7 Tax=Bacteria RepID=C6XRA4_HIRBI 199 3e-50 UniRef50_Q31H49 Ribonuclease H n=7 Tax=root RepID=RNH_THICR 198 4e-50 UniRef50_A3QET0 Ribonuclease H n=32 Tax=Bacteria RepID=RNH_SHELP 197 1e-49 UniRef50_Q2J0F8 Ribonuclease H n=19 Tax=Proteobacteria RepID=RNH... 195 5e-49 UniRef50_A1KV38 Ribonuclease H n=98 Tax=cellular organisms RepID... 194 7e-49 UniRef50_B0T025 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CAUSK 193 1e-48 UniRef50_Q2Z0V7 Putative Ribonuclease HI n=1 Tax=Pseudomonas pha... 192 2e-48 UniRef50_A0L9H3 RNase HI n=1 Tax=Magnetococcus sp. MC-1 RepID=A0... 191 7e-48 UniRef50_A0LGJ7 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_... 190 1e-47 UniRef50_Q2RPU6 Ribonuclease H n=93 Tax=Bacteria RepID=RNH_RHORT 190 1e-47 UniRef50_Q5NYP6 Ribonuclease H n=2 Tax=Proteobacteria RepID=RNH_... 190 2e-47 UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria Rep... 189 3e-47 UniRef50_D1VE35 Ribonuclease H n=1 Tax=Frankia sp. EuI1c RepID=D... 187 7e-47 UniRef50_Q14IN1 Ribonuclease H n=225 Tax=cellular organisms RepI... 186 2e-46 UniRef50_C9KMB8 Ribonuclease HI (Fragment) n=1 Tax=Mitsuokella m... 184 5e-46 UniRef50_B3EH35 Ribonuclease H n=6 Tax=Bacteria RepID=RNH_CHLL2 184 5e-46 UniRef50_C8X6F1 Ribonuclease H n=1 Tax=Nakamurella multipartita ... 184 9e-46 UniRef50_P29253 Ribonuclease H n=100 Tax=Bacteria RepID=RNH_THET8 183 1e-45 UniRef50_A5CEP5 Ribonuclease H n=33 Tax=cellular organisms RepID... 183 2e-45 UniRef50_C6WBP3 Ribonuclease H n=9 Tax=Bacteria RepID=C6WBP3_ACTMD 182 2e-45 UniRef50_Q2LWY9 Ribonuclease H n=7 Tax=Bacteria RepID=RNH_SYNAS 181 5e-45 UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA po... 181 5e-45 UniRef50_B0K9M0 Ribonuclease H n=14 Tax=Bacteria RepID=RNH_THEP3 180 1e-44 UniRef50_A9WK52 Ribonuclease H n=11 Tax=Bacteria RepID=A9WK52_CHLAA 180 1e-44 UniRef50_Q5FG88 Ribonuclease H n=4 Tax=Rickettsiales RepID=RNH_E... 179 2e-44 UniRef50_C9LX49 Ribonuclease H n=2 Tax=Selenomonas RepID=C9LX49_... 179 3e-44 UniRef50_Q5PBQ8 Ribonuclease H n=10 Tax=Bacteria RepID=RNH_ANAMM 178 5e-44 UniRef50_Q2RKU0 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_MOOTA 178 5e-44 UniRef50_B7JVG1 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CYAP8 178 7e-44 UniRef50_A6C006 Ribonuclease H n=1 Tax=Planctomyces maris DSM 87... 177 9e-44 UniRef50_A9B1F3 Ribonuclease H n=2 Tax=Bacteria RepID=A9B1F3_HERA2 176 1e-43 UniRef50_A3DD79 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CLOTH 176 2e-43 UniRef50_A7FR34 Ribonuclease H n=11 Tax=Firmicutes RepID=RNH_CLOB1 176 2e-43 UniRef50_A4XKQ3 Ribonuclease H n=2 Tax=Bacteria RepID=RNH_CALS8 176 2e-43 UniRef50_C2D756 Ribonuclease H n=1 Tax=Atopobium vaginae DSM 158... 175 3e-43 UniRef50_A2FNB2 RNase H family protein n=1 Tax=Trichomonas vagin... 175 3e-43 UniRef50_C5GNS4 RNase H domain-containing protein n=4 Tax=Onygen... 175 4e-43 UniRef50_Q2S3C1 RNase H n=3 Tax=Bacteria RepID=Q2S3C1_SALRD 175 4e-43 UniRef50_UPI0000587365 PREDICTED: similar to Ribonuclease H1 n=1... 173 2e-42 UniRef50_A9W185 Ribonuclease H n=9 Tax=Alphaproteobacteria RepID... 173 2e-42 UniRef50_A7SAK2 Predicted protein n=1 Tax=Nematostella vectensis... 171 7e-42 UniRef50_A5GAH5 Ribonuclease H n=6 Tax=Desulfuromonadales RepID=... 171 8e-42 UniRef50_B6BTS2 RNase H n=1 Tax=beta proteobacterium KB13 RepID=... 170 1e-41 UniRef50_Q5N0R7 Ribonuclease H n=3 Tax=Cyanobacteria RepID=Q5N0R... 170 1e-41 UniRef50_C8VF62 Ribonuclease H, putative (AFU_orthologue; AFUA_1... 169 2e-41 UniRef50_A2QPK3 Contig An07c0360, complete genome n=16 Tax=Eurot... 169 2e-41 UniRef50_Q8DM24 Ribonuclease H n=27 Tax=Cyanobacteria RepID=RNH_... 168 4e-41 UniRef50_Q17XJ7 Ribonuclease H n=15 Tax=Campylobacterales RepID=... 168 4e-41 UniRef50_A8ZXF3 Ribonuclease H n=1 Tax=Desulfococcus oleovorans ... 168 4e-41 UniRef50_D2R4V0 Ribonuclease H n=2 Tax=Planctomycetaceae RepID=D... 167 8e-41 UniRef50_D2XAD4 Ribonuclease H n=1 Tax=Marseillevirus RepID=D2XA... 167 9e-41 UniRef50_A7NII6 Ribonuclease H n=3 Tax=Bacteria RepID=A7NII6_ROSCS 167 1e-40 UniRef50_B2S2V0 Ribonuclease H n=4 Tax=Bacteria RepID=RNH_TREPS 166 2e-40 UniRef50_B7J4E2 Ribonuclease H n=2 Tax=Acidithiobacillus ferroox... 165 4e-40 UniRef50_C1BKT9 Ribonuclease H1 n=5 Tax=Euteleostomi RepID=C1BKT... 164 6e-40 UniRef50_A5US20 Ribonuclease H n=2 Tax=Bacteria RepID=A5US20_ROSS1 164 6e-40 UniRef50_C5EB64 Ribonuclease H n=2 Tax=Bifidobacterium longum Re... 164 7e-40 UniRef50_A4Y094 Ribonuclease H n=1 Tax=Pseudomonas mendocina ymp... 164 9e-40 UniRef50_C4V6H3 Ribonuclease H n=1 Tax=Selenomonas flueggei ATCC... 164 1e-39 UniRef50_Q92S39 Probable ribonuclease HI protein n=1 Tax=Sinorhi... 163 1e-39 UniRef50_C3Y169 Putative uncharacterized protein n=1 Tax=Branchi... 163 2e-39 UniRef50_O60930 Ribonuclease H1 n=26 Tax=Bilateria RepID=RNH1_HUMAN 163 2e-39 UniRef50_A8HXQ9 Ribonuclease H n=1 Tax=Azorhizobium caulinodans ... 162 3e-39 UniRef50_UPI000180BF60 PREDICTED: similar to predicted protein n... 162 3e-39 UniRef50_D2Q8L6 Rnh Ribonuclease H n=2 Tax=Bifidobacterium denti... 162 3e-39 UniRef50_D1NV93 Ribonuclease H n=1 Tax=Bifidobacterium gallicum ... 162 3e-39 UniRef50_C0VYC6 Prolyl aminopeptidase n=1 Tax=Actinomyces coleoc... 162 3e-39 UniRef50_B2AD65 Predicted CDS Pa_4_220 n=1 Tax=Podospora anserin... 162 4e-39 UniRef50_B6JI04 Ribonuclease HI (RNase HI) n=1 Tax=Oligotropha c... 161 5e-39 UniRef50_Q2GDA1 Ribonuclease H n=2 Tax=Neorickettsia RepID=RNH_N... 161 5e-39 UniRef50_A6FRK2 Ribonuclease H n=1 Tax=Roseobacter sp. AzwK-3b R... 161 8e-39 UniRef50_C9SF93 Ribonuclease H n=2 Tax=Sordariomycetes RepID=C9S... 161 9e-39 UniRef50_UPI000186D39C asparagine-rich protein, putative n=1 Tax... 160 1e-38 UniRef50_C1D179 Putative ribonuclease H n=1 Tax=Deinococcus dese... 160 1e-38 UniRef50_UPI0001757D40 PREDICTED: similar to GA21286-PA n=1 Tax=... 160 1e-38 UniRef50_Q9RVX2 Ribonuclease H n=1 Tax=Deinococcus radiodurans R... 160 1e-38 UniRef50_A6GW41 Ribonuclease HI n=13 Tax=Bacteria RepID=A6GW41_F... 159 2e-38 UniRef50_A7IEA7 Ribonuclease H n=1 Tax=Xanthobacter autotrophicu... 159 2e-38 UniRef50_B2AS39 Predicted CDS Pa_1_22230 n=2 Tax=Sordariomycetes... 159 2e-38 UniRef50_A8QFV5 RNase H family protein n=1 Tax=Brugia malayi Rep... 159 3e-38 UniRef50_A1A0B0 Ribonuclease H n=8 Tax=Bifidobacterium RepID=A1A... 159 3e-38 UniRef50_A4JFN6 Ribonuclease H n=1 Tax=Burkholderia vietnamiensi... 159 3e-38 UniRef50_Q6MIM3 Ribonuclease H n=1 Tax=Bdellovibrio bacteriovoru... 159 3e-38 UniRef50_Q7V474 Possible ribonuclease HI n=12 Tax=Bacteria RepID... 158 5e-38 UniRef50_A9WMA2 Ribonuclease HI n=1 Tax=Renibacterium salmoninar... 158 5e-38 UniRef50_A6RRU3 Putative uncharacterized protein n=1 Tax=Botryot... 158 5e-38 UniRef50_B0CND0 Predicted protein n=1 Tax=Laccaria bicolor S238N... 158 5e-38 UniRef50_A8N3A5 Predicted protein n=2 Tax=Eukaryota RepID=A8N3A5... 158 5e-38 UniRef50_C0QZB8 Ribonuclease H n=2 Tax=Brachyspira RepID=C0QZB8_... 157 9e-38 UniRef50_C7NFY8 RNase HI n=1 Tax=Kytococcus sedentarius DSM 2054... 157 9e-38 UniRef50_Q86MG7 Rnase h protein 1.0, isoform c, partially confir... 157 1e-37 UniRef50_C2FU18 Ribonuclease H n=2 Tax=Sphingobacterium spiritiv... 156 2e-37 UniRef50_Q83HK9 Ribonuclease H n=3 Tax=Actinomycetales RepID=RNH... 156 2e-37 UniRef50_A5GWJ8 Ribonuclease H n=3 Tax=Synechococcus RepID=A5GWJ... 156 2e-37 UniRef50_A8PYJ8 Putative uncharacterized protein n=1 Tax=Malasse... 156 3e-37 UniRef50_UPI0001925315 PREDICTED: similar to predicted protein n... 155 3e-37 UniRef50_O44114 Ribonuclease H1 n=3 Tax=Drosophila melanogaster ... 155 4e-37 UniRef50_Q7S4S2 Predicted protein n=2 Tax=Sordariales RepID=Q7S4... 155 5e-37 UniRef50_C0ZQX0 Ribonuclease HI n=2 Tax=Rhodococcus erythropolis... 155 5e-37 UniRef50_C1B0N1 Ribonuclease HI n=3 Tax=Nocardiaceae RepID=C1B0N... 154 5e-37 UniRef50_Q0TWR7 Putative uncharacterized protein n=1 Tax=Phaeosp... 154 5e-37 UniRef50_Q9X7R6 Ribonuclease HI n=8 Tax=Actinomycetales RepID=RN... 154 5e-37 UniRef50_C7MN72 RNase HI n=2 Tax=Bacteria RepID=C7MN72_CRYCD 154 6e-37 UniRef50_C2CX87 Possible ribonuclease H n=2 Tax=Bifidobacteriace... 154 8e-37 UniRef50_Q66LX4 Ribonuclease H n=4 Tax=Siphoviridae RepID=Q66LX4... 154 1e-36 UniRef50_Q46HH3 Ribonuclease H n=5 Tax=Cyanobacteria RepID=RNH_P... 154 1e-36 UniRef50_D1YER5 Ribonuclease HI n=4 Tax=Actinomycetales RepID=D1... 153 1e-36 UniRef50_C1BPL6 Ribonuclease H1 n=1 Tax=Caligus rogercresseyi Re... 153 1e-36 UniRef50_D2R9R7 Ribonuclease HI n=1 Tax=Gardnerella vaginalis 40... 153 1e-36 UniRef50_C3MAD4 Putative ribonuclease HI n=1 Tax=Rhizobium sp. N... 153 2e-36 UniRef50_B8DW51 Ribonuclease H n=4 Tax=Bifidobacterium animalis ... 152 3e-36 UniRef50_Q9UST8 Ribonuclease H n=1 Tax=Schizosaccharomyces pombe... 152 3e-36 UniRef50_UPI0001C31642 Ribonuclease H n=1 Tax=Conexibacter woese... 152 3e-36 UniRef50_A5FZ26 Ribonuclease H n=11 Tax=Bacteria RepID=RNH_ACICJ 152 3e-36 UniRef50_A2SIU3 RNase HI n=2 Tax=Proteobacteria RepID=A2SIU3_METPP 152 3e-36 UniRef50_Q5KPB0 Ribonuclease H, putative n=2 Tax=Filobasidiella ... 151 6e-36 UniRef50_Q8D3D3 Ribonuclease H n=1 Tax=Wigglesworthia glossinidi... 151 6e-36 UniRef50_Q58E11 MGC115038 protein n=2 Tax=Xenopus RepID=Q58E11_X... 151 6e-36 UniRef50_Q6C0A0 YALI0F26543p n=1 Tax=Yarrowia lipolytica RepID=Q... 151 7e-36 UniRef50_A8EUW9 Ribonuclease HI n=1 Tax=Arcobacter butzleri RM40... 151 7e-36 UniRef50_B8HCV8 Ribonuclease H n=6 Tax=Actinobacteria (class) Re... 151 8e-36 UniRef50_D1BU35 Ribonuclease H n=1 Tax=Xylanimonas cellulosilyti... 151 9e-36 UniRef50_C7M9U7 RNase HI n=1 Tax=Brachybacterium faecium DSM 481... 151 9e-36 UniRef50_D2NR13 Ribonuclease HI n=2 Tax=Rothia mucilaginosa RepI... 151 9e-36 UniRef50_A4QYI2 Putative uncharacterized protein n=1 Tax=Magnapo... 149 2e-35 UniRef50_A3W3Z9 Bifunctional protein: Ribonuclease HI and DNA po... 149 2e-35 UniRef50_B3S3Z5 Putative uncharacterized protein n=1 Tax=Trichop... 149 4e-35 UniRef50_UPI000050F716 ribonuclease H n=1 Tax=Brevibacterium lin... 148 4e-35 UniRef50_Q4P0S4 Putative uncharacterized protein n=1 Tax=Ustilag... 148 4e-35 UniRef50_Q7Q3X5 AGAP008088-PA n=1 Tax=Anopheles gambiae RepID=Q7... 148 5e-35 UniRef50_Q1DA37 Ribonuclease H n=1 Tax=Myxococcus xanthus DK 162... 148 8e-35 UniRef50_A5L3F5 Bifunctional protein: Ribonuclease HI and DNA po... 147 9e-35 UniRef50_B6JLP9 Ribonuclease H n=3 Tax=Helicobacter RepID=B6JLP9... 147 1e-34 UniRef50_B4UMK8 Ribonuclease H n=4 Tax=Anaeromyxobacter RepID=RN... 147 1e-34 UniRef50_D0JBH5 Ribonuclease HI n=3 Tax=Flavobacteria RepID=D0JB... 147 1e-34 UniRef50_A0JT09 Ribonuclease H n=5 Tax=Actinomycetales RepID=A0J... 146 2e-34 UniRef50_B7KMH6 Ribonuclease H n=1 Tax=Cyanothece sp. PCC 7424 R... 146 2e-34 UniRef50_D0WKT5 Ribonuclease HI n=1 Tax=Actinomyces sp. oral tax... 145 4e-34 UniRef50_C0QFZ9 RnhA1 n=1 Tax=Desulfobacterium autotrophicum HRM... 144 6e-34 UniRef50_C4QWX0 Ribonuclease H1 n=1 Tax=Pichia pastoris GS115 Re... 144 1e-33 UniRef50_C1BQR6 Ribonuclease H1 n=2 Tax=Caligus rogercresseyi Re... 143 1e-33 UniRef50_B6VBD2 Putative uncharacterized protein (Fragment) n=1 ... 143 2e-33 UniRef50_B2GFP5 Ribonuclease HI n=1 Tax=Kocuria rhizophila DC220... 143 2e-33 UniRef50_D1WSF8 Ribonuclease H n=10 Tax=Streptomyces RepID=D1WSF... 143 2e-33 UniRef50_B4SE10 Ribonuclease H n=1 Tax=Pelodictyon phaeoclathrat... 142 4e-33 UniRef50_Q484S6 Ribonuclease HI n=3 Tax=Alteromonadales RepID=Q4... 142 4e-33 UniRef50_C4QPU4 Phosphoglucomutase, putative n=5 Tax=Schistosoma... 141 5e-33 UniRef50_Q6CHD9 YALI0A09878p n=1 Tax=Yarrowia lipolytica RepID=Q... 141 5e-33 UniRef50_UPI000185C12F ribonuclease H n=1 Tax=Corynebacterium am... 141 6e-33 UniRef50_C4YSL5 Putative uncharacterized protein n=1 Tax=Candida... 141 6e-33 UniRef50_UPI000051AB6A PREDICTED: similar to Ribonuclease H1 (RN... 141 8e-33 UniRef50_C0QLK2 RnhA2 n=1 Tax=Desulfobacterium autotrophicum HRM... 141 1e-32 UniRef50_C4WXR8 ACYPI28043 protein n=1 Tax=Acyrthosiphon pisum R... 139 3e-32 UniRef50_B0WK63 Putative uncharacterized protein n=1 Tax=Culex q... 138 4e-32 UniRef50_Q6C6C0 YALI0E10725p n=1 Tax=Yarrowia lipolytica RepID=Q... 138 5e-32 UniRef50_B8CNS8 Ribonuclease H n=1 Tax=Shewanella piezotolerans ... 138 5e-32 UniRef50_A6QCI9 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_SULNB 137 7e-32 UniRef50_A1SDS5 Ribonuclease H n=1 Tax=Nocardioides sp. JS614 Re... 137 7e-32 UniRef50_UPI00016B24DF ribonuclease HI n=1 Tax=candidate divisio... 137 8e-32 UniRef50_Q12R78 Ribonuclease H n=22 Tax=Proteobacteria RepID=Q12... 137 8e-32 UniRef50_Q6CGX9 YALI0A15059p n=1 Tax=Yarrowia lipolytica RepID=Q... 137 1e-31 UniRef50_Q6CHQ1 YALI0A06523p n=1 Tax=Yarrowia lipolytica RepID=Q... 137 1e-31 UniRef50_A8B979 Ribonuclease H n=2 Tax=Giardia intestinalis RepI... 137 1e-31 UniRef50_A5E5Q5 Putative uncharacterized protein n=1 Tax=Loddero... 136 2e-31 UniRef50_Q6CH42 YALI0A12705p n=1 Tax=Yarrowia lipolytica RepID=Q... 135 4e-31 UniRef50_B4VV33 RNase H, putative n=1 Tax=Microcoleus chthonopla... 135 4e-31 UniRef50_B9WJ33 Ribonuclease H, putative n=6 Tax=Saccharomycetal... 135 5e-31 UniRef50_A1D7S4 RNase H domain protein n=1 Tax=Neosartorya fisch... 135 5e-31 UniRef50_Q6BQV8 DEHA2E01870p n=2 Tax=Debaryomyces hansenii RepID... 134 1e-30 UniRef50_A5E5Q8 Putative uncharacterized protein n=1 Tax=Loddero... 133 1e-30 UniRef50_Q2S3J4 Ribonuclease H n=1 Tax=Salinibacter ruber DSM 13... 133 1e-30 UniRef50_B9WIZ5 Ribonuclease H, putative n=4 Tax=Candida RepID=B... 133 2e-30 UniRef50_D2EJR4 RNase HI n=1 Tax=Pediococcus acidilactici 7_4 Re... 132 3e-30 UniRef50_A9EZR8 Ribonuclease H n=1 Tax=Sorangium cellulosum 'So ... 132 3e-30 UniRef50_D0LP47 Ribonuclease H n=1 Tax=Haliangium ochraceum DSM ... 132 4e-30 UniRef50_C4XZS8 Putative uncharacterized protein n=1 Tax=Clavisp... 131 6e-30 UniRef50_B8FI74 Ribonuclease H n=1 Tax=Desulfatibacillum alkeniv... 131 6e-30 UniRef50_C7GZL7 Ribonuclease HI n=1 Tax=Eubacterium saphenum ATC... 131 6e-30 UniRef50_Q04CJ1 RNase HI n=5 Tax=Lactobacillus RepID=Q04CJ1_LACDB 131 1e-29 UniRef50_Q03HC1 RNase HI n=3 Tax=Lactobacillaceae RepID=Q03HC1_P... 130 1e-29 UniRef50_Q0URN5 Putative uncharacterized protein n=2 Tax=Leotiom... 130 1e-29 UniRef50_B6BHK3 Ribonuclease H n=2 Tax=Proteobacteria RepID=B6BH... 130 2e-29 UniRef50_Q6ML79 RnhA protein n=1 Tax=Bdellovibrio bacteriovorus ... 130 2e-29 UniRef50_A5D9X8 Putative uncharacterized protein n=2 Tax=Pichia ... 130 2e-29 UniRef50_A5D9X7 Putative uncharacterized protein n=2 Tax=Pichia ... 129 2e-29 UniRef50_A6LWB3 Ribonuclease H n=2 Tax=Clostridium RepID=A6LWB3_... 129 3e-29 UniRef50_Q2JHH6 Ribonuclease H n=2 Tax=Synechococcus RepID=Q2JHH... 129 3e-29 UniRef50_C5M9Q2 Putative uncharacterized protein n=1 Tax=Candida... 128 4e-29 UniRef50_C5M9Q1 Putative uncharacterized protein n=1 Tax=Candida... 128 6e-29 UniRef50_Q034K7 RNase H with double-stranded RNA/RNA-DNA hybrid ... 128 6e-29 UniRef50_A5UB13 Ribonuclease H n=1 Tax=Haemophilus influenzae Pi... 127 9e-29 UniRef50_Q5E052 Ribonuclease H n=20 Tax=Vibrionaceae RepID=Q5E05... 127 9e-29 UniRef50_C7YSN3 Putative uncharacterized protein n=1 Tax=Nectria... 127 1e-28 UniRef50_C1A5K0 Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca ... 126 2e-28 UniRef50_A2R215 Contig An13c0090, complete genome n=1 Tax=Asperg... 126 2e-28 UniRef50_Q54222 Putative RNaseH n=1 Tax=Streptomyces galbus RepI... 126 2e-28 UniRef50_C6VIU9 Ribonuclease H (Putative) n=4 Tax=Lactobacillus ... 124 8e-28 UniRef50_Q7V385 Possible ribonuclease HI n=7 Tax=Prochlorococcus... 124 1e-27 UniRef50_A6GJD7 DNA polymerase III, epsilon subunit n=1 Tax=Ples... 124 1e-27 UniRef50_B9JEK9 Putative uncharacterized protein n=1 Tax=Agrobac... 123 1e-27 UniRef50_C9ZTC3 Ribonuclease H1 n=3 Tax=Trypanosoma brucei RepID... 123 2e-27 UniRef50_A8ZTA6 Ribonuclease H n=1 Tax=Desulfococcus oleovorans ... 122 4e-27 UniRef50_Q1QJH4 Ribonuclease H n=1 Tax=Nitrobacter hamburgensis ... 122 5e-27 UniRef50_Q07762 Ribonuclease H n=4 Tax=Trypanosomatidae RepID=RN... 122 5e-27 UniRef50_D0NEW7 Ribonuclease, putative n=1 Tax=Phytophthora infe... 121 6e-27 UniRef50_UPI000179CCC3 Protease n=2 Tax=Bos taurus RepID=UPI0001... 121 6e-27 UniRef50_A5DAG3 Putative uncharacterized protein n=1 Tax=Pichia ... 121 7e-27 UniRef50_A7EQD5 Putative uncharacterized protein n=2 Tax=Sclerot... 119 2e-26 UniRef50_A8XYS2 C. briggsae CBR-RNH-1.3 protein n=2 Tax=Caenorha... 119 3e-26 UniRef50_Q5BXL7 SJCHGC09332 protein (Fragment) n=1 Tax=Schistoso... 119 4e-26 UniRef50_B8MPL2 Ribonuclease H1, putative n=1 Tax=Talaromyces st... 118 4e-26 UniRef50_C2KDF2 Ribonuclease n=16 Tax=Lactobacillus RepID=C2KDF2... 118 5e-26 UniRef50_Q8SD07 PHIKZ155 n=2 Tax=phiKZ-like viruses RepID=Q8SD07... 118 6e-26 UniRef50_Q9TTC1 Integrase n=20 Tax=root RepID=POL_KORV 117 8e-26 UniRef50_Q5UPY1 Probable ribonuclease H n=1 Tax=Acanthamoeba pol... 117 8e-26 UniRef50_Q046W4 RNase HI n=5 Tax=Lactobacillus RepID=Q046W4_LACGA 117 1e-25 UniRef50_Q6FPF4 Similar to uniprot|Q04740 Saccharomyces cerevisi... 117 1e-25 UniRef50_A8NLY2 Putative uncharacterized protein n=1 Tax=Coprino... 117 1e-25 UniRef50_Q9XVE6 Protein C04F12.9, confirmed by transcript eviden... 117 2e-25 UniRef50_C5R9S8 Ribonuclease H n=1 Tax=Weissella paramesenteroid... 116 2e-25 UniRef50_A1D376 Reverse transcriptase, RNaseH, putative n=3 Tax=... 116 2e-25 UniRef50_Q5MCR4 Ribonuclease HI n=1 Tax=Leishmania major RepID=Q... 115 3e-25 UniRef50_UPI000194C160 PREDICTED: similar to polyprotein n=12 Ta... 115 4e-25 UniRef50_A9CET6 Ribonuclease H n=1 Tax=Agrobacterium tumefaciens... 115 4e-25 UniRef50_Q6CDS8 YALI0B21494p n=1 Tax=Yarrowia lipolytica RepID=Q... 115 6e-25 UniRef50_A5D9X9 Putative uncharacterized protein n=2 Tax=Pichia ... 114 8e-25 UniRef50_Q04740 Ribonuclease H n=6 Tax=Saccharomycetaceae RepID=... 114 9e-25 UniRef50_B5ZRJ7 Ribonuclease H n=6 Tax=Rhizobium RepID=B5ZRJ7_RHILW 114 1e-24 UniRef50_B6B8N1 RNA-directed DNA polymerase n=1 Tax=Rhodobactera... 114 1e-24 UniRef50_D0NEW3 Putative uncharacterized protein n=2 Tax=Phytoph... 114 1e-24 UniRef50_UPI0000F2E7D9 PREDICTED: similar to polyprotein n=5 Tax... 114 1e-24 UniRef50_C5DHG7 KLTH0E04202p n=1 Tax=Lachancea thermotolerans CB... 113 2e-24 UniRef50_UPI000155BCE8 PREDICTED: similar to pol protein n=1 Tax... 113 2e-24 UniRef50_UPI0000F2BD89 PREDICTED: similar to polyprotein n=1 Tax... 112 2e-24 UniRef50_A1CQB1 Reverse transcriptase, RNaseH, putative n=1 Tax=... 112 3e-24 UniRef50_UPI0001908521 putative ribonuclease HI n=3 Tax=Rhizobiu... 111 5e-24 UniRef50_Q2HHV6 Putative uncharacterized protein n=2 Tax=Sordari... 111 6e-24 UniRef50_P31795 Integrase (Fragment) n=73 Tax=root RepID=POL_MLVRK 111 1e-23 UniRef50_Q03P82 RNase HI n=15 Tax=Lactobacillus RepID=Q03P82_LACBA 111 1e-23 UniRef50_B6QSX7 Ribonuclease H1, putative n=4 Tax=Eurotiomycetid... 110 1e-23 UniRef50_A8X0Y9 Putative uncharacterized protein n=1 Tax=Caenorh... 110 1e-23 Sequences not found previously or not previously below threshold: >UniRef50_A6T512 Ribonuclease H n=155 Tax=Bacteria RepID=RNH_KLEP7 Length = 155 Score = 221 bits (565), Expect = 4e-57, Method: Composition-based stats. Identities = 140/154 (90%), Positives = 146/154 (94%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 MLKQVEIFTDGSCLGNPGPGGYGAI+RYR EKTFSAGY TTNNRMELMAAIVALEALK Sbjct: 1 MLKQVEIFTDGSCLGNPGPGGYGAIMRYRQHEKTFSAGYRLTTNNRMELMAAIVALEALK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EHCEV+LSTDSQYVRQGITQWIHNWKKRGWKTA+KKPVKNVDLWQRLDAALGQH+IKWEW Sbjct: 61 EHCEVVLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALGQHKIKWEW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 VKGHAGHPENERCDELARAAA +PTL+D GY E Sbjct: 121 VKGHAGHPENERCDELARAAASHPTLDDVGYLPE 154 >UniRef50_A7MI34 Ribonuclease H n=2 Tax=Cronobacter RepID=RNH_ENTS8 Length = 158 Score = 220 bits (560), Expect = 2e-56, Method: Composition-based stats. Identities = 138/155 (89%), Positives = 144/155 (92%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYGAILRY+ E+TFSAGY TTNNRMELMAAIV+LEAL+ Sbjct: 1 MRKQVEIFTDGSCLGNPGPGGYGAILRYKQHERTFSAGYRLTTNNRMELMAAIVSLEALR 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 EHC V LSTDSQYVRQGITQWIHNWKKRGWKTA+KKPVKNVDLWQRLDAAL QH+IKWEW Sbjct: 61 EHCIVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVDLWQRLDAALSQHEIKWEW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 VKGHAGHPENERCDELARAAAM PTLEDTGYQ E Sbjct: 121 VKGHAGHPENERCDELARAAAMAPTLEDTGYQPEA 155 >UniRef50_Q65S82 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_MANSM Length = 158 Score = 213 bits (542), Expect = 2e-54, Method: Composition-based stats. Identities = 100/154 (64%), Positives = 115/154 (74%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQ+EIFTDGSCLGNPG GG G +LRY+ EKT S GY +TTNNRMEL A I AL LK Sbjct: 5 MRKQIEIFTDGSCLGNPGAGGIGVVLRYKQHEKTLSQGYFKTTNNRMELRAVIEALNLLK 64 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C V L +DSQY++ GITQWI NWKK+ WK ++ KPVKN DLW LD A+ H I W W Sbjct: 65 EPCAVTLHSDSQYMKNGITQWIFNWKKKNWKASNGKPVKNQDLWMALDNAVQAHTIDWRW 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 VKGH+GH ENE CD+LA+ A NPTLED GYQ + Sbjct: 125 VKGHSGHRENELCDQLAKQGAENPTLEDIGYQPD 158 >UniRef50_B4EUG3 Ribonuclease H n=13 Tax=Bacteria RepID=RNH_PROMH Length = 159 Score = 213 bits (542), Expect = 2e-54, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 131/151 (86%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYGAILRY+ EKT S G+ TTNNRMEL+AAIVALEALK Sbjct: 1 MHKQVEIFTDGSCLGNPGPGGYGAILRYQQHEKTLSEGFFMTTNNRMELLAAIVALEALK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C++ L+TDSQYVRQGIT+WIH+WKKR W+ ADK PV NVDLW+RLD A+ +H+I+W W Sbjct: 61 FPCKITLTTDSQYVRQGITKWIHSWKKRQWRKADKSPVLNVDLWKRLDKAIERHEIEWHW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENERCDELA+AAA +PT EDTGY Sbjct: 121 VKGHAGHDENERCDELAKAAAQSPTKEDTGY 151 >UniRef50_Q5E3G5 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_VIBF1 Length = 157 Score = 210 bits (535), Expect = 1e-53, Method: Composition-based stats. Identities = 112/151 (74%), Positives = 128/151 (84%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 ++KQVEIFTDGSCLGNPGPGGYG ++RY+G EKTFS G+ +TTNNRME++AA+VAL LK Sbjct: 5 IMKQVEIFTDGSCLGNPGPGGYGIVMRYKGTEKTFSEGFNKTTNNRMEMLAAVVALRKLK 64 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C VIL+TDSQYVRQGITQWIH WKKR WK ADKKPV N DLW++LDA +H+I W W Sbjct: 65 EPCSVILTTDSQYVRQGITQWIHGWKKRDWKKADKKPVVNADLWKQLDAESERHKIDWRW 124 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENE CDELAR AA NPT +DTGY Sbjct: 125 VKGHAGHRENEMCDELARTAAENPTQDDTGY 155 >UniRef50_Q7N807 Ribonuclease H n=8 Tax=Gammaproteobacteria RepID=RNH_PHOLL Length = 156 Score = 207 bits (528), Expect = 7e-53, Method: Composition-based stats. Identities = 114/151 (75%), Positives = 127/151 (84%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQVEIFTDGSCLGNPGPGGYG +LRY+ EKT S G+ TTNNRMELMAAI+ LE L Sbjct: 1 MGKQVEIFTDGSCLGNPGPGGYGVLLRYQQHEKTLSEGFYHTTNNRMELMAAIIGLETLT 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+++L+TDSQYVRQGITQWIHNWKKRGW+ ADK PV NVDLWQRLD A+ +H I W+W Sbjct: 61 RPCKIVLTTDSQYVRQGITQWIHNWKKRGWRKADKSPVSNVDLWQRLDQAISRHNIDWQW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGHAGH ENERCDELARAAA +PT DTGY Sbjct: 121 VKGHAGHDENERCDELARAAANSPTETDTGY 151 >UniRef50_A1AT66 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_PELPD Length = 163 Score = 200 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 76/142 (53%), Positives = 95/142 (66%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 VEI+ DG+C GNPGPGGYGAILRY G EK TTNNRMEL AA+ AL L C Sbjct: 19 PVEIYCDGACSGNPGPGGYGAILRYNGHEKEIRGSEAHTTNNRMELTAAMEALRLLTRPC 78 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + TDSQY+ +G+T+WI W++RGW+ + K+PV N DLW+ L H + W+W++G Sbjct: 79 RITIVTDSQYLVKGMTEWIQGWQRRGWQNSKKEPVLNRDLWEELLKLSAHHDVSWQWIRG 138 Query: 124 HAGHPENERCDELARAAAMNPT 145 HAGH ENERCD LAR A Sbjct: 139 HAGHAENERCDSLARQAITEMR 160 >UniRef50_B8DIU7 Ribonuclease H n=24 Tax=cellular organisms RepID=RNH_DESVM Length = 156 Score = 200 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 89/153 (58%), Positives = 111/153 (72%), Gaps = 2/153 (1%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K V+ FTDGSCLGNPGPGG+ A+LR G E+ S G+ TTNNRME++A I AL LKE Sbjct: 3 MKNVQAFTDGSCLGNPGPGGWAAVLRCNGSERELSGGFALTTNNRMEILAVIEALALLKE 62 Query: 62 HCEVILSTDSQYVRQGIT-QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C V L TDSQYVR + +W+ W++ GWKT+DKKPVKN DLW+RL L HQ+++ W Sbjct: 63 PCGVDLYTDSQYVRNAVEKKWLAGWRRNGWKTSDKKPVKNRDLWERLQPLLDLHQVRFHW 122 Query: 121 VKGHAGHPENERCDELAR-AAAMNPTLEDTGYQ 152 V+GH+GHPENERCD LAR A+ DTGY+ Sbjct: 123 VRGHSGHPENERCDVLARTQASSRGLPPDTGYR 155 >UniRef50_B1KHK0 Ribonuclease H n=21 Tax=Bacteria RepID=RNH_SHEWM Length = 161 Score = 199 bits (506), Expect = 3e-50, Method: Composition-based stats. Identities = 105/156 (67%), Positives = 124/156 (79%), Gaps = 1/156 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 +LKQ+ IFTDGSCLGNPGPGGYG +++Y+ K S G+ TTNNRMEL+A I+ALEALK Sbjct: 3 VLKQLSIFTDGSCLGNPGPGGYGVVMKYKAHTKELSDGFALTTNNRMELLAPIIALEALK 62 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C++IL++DSQY+RQGITQWIH WKK+ W T+ K+PVKNVDLW+RLDAA H+I W W Sbjct: 63 VPCKIILTSDSQYMRQGITQWIHGWKKKNWITSTKQPVKNVDLWKRLDAATQSHEIDWHW 122 Query: 121 VKGHAGHPENERCDELARAAAM-NPTLEDTGYQVEV 155 VKGHAGH ENERCD LAR AA PT ED GYQ V Sbjct: 123 VKGHAGHVENERCDTLARVAAEAKPTQEDLGYQPSV 158 >UniRef50_C6XRA4 Ribonuclease H n=7 Tax=Bacteria RepID=C6XRA4_HIRBI Length = 321 Score = 199 bits (506), Expect = 3e-50, Method: Composition-based stats. Identities = 80/145 (55%), Positives = 99/145 (68%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M +EI+TDG+C GNPGPGG+GA++ G+E G TTNNRMELM AI AL ++ Sbjct: 1 MTDMIEIWTDGACSGNPGPGGWGALIVNDGQEIELYGGEANTTNNRMELMGAIEALNSIN 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ L TDS YV+ G+TQWIH WK+ GWKTA K+PVKN DLWQ LD A +HQI+W+W Sbjct: 61 TSSKITLHTDSTYVKNGLTQWIHGWKRNGWKTASKQPVKNKDLWQALDEACKRHQIEWKW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPT 145 VKGH+G NER D LA A Sbjct: 121 VKGHSGDEGNERADSLAVKGAREAA 145 Score = 187 bits (476), Expect = 7e-47, Method: Composition-based stats. Identities = 88/142 (61%), Positives = 102/142 (71%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 QV+I+TDG+C GNPGPGG+GA+L+ EK G TTNNRMELM AI AL +LK Sbjct: 177 QVQIWTDGACSGNPGPGGWGALLKMGEHEKELYGGEKDTTNNRMELMGAIEALTSLKGPS 236 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 VILSTDS YV+ G+T+WIH WKK GWKTA KKPVKN DLWQ LD A +HQI+W WVKG Sbjct: 237 NVILSTDSTYVKDGLTKWIHGWKKNGWKTAAKKPVKNQDLWQALDEACSRHQIEWRWVKG 296 Query: 124 HAGHPENERCDELARAAAMNPT 145 HAG NER D LA +M + Sbjct: 297 HAGDEGNERADGLAVKGSMEAS 318 >UniRef50_Q31H49 Ribonuclease H n=7 Tax=root RepID=RNH_THICR Length = 145 Score = 198 bits (505), Expect = 4e-50, Method: Composition-based stats. Identities = 91/144 (63%), Positives = 105/144 (72%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +++VE+FTDG C GNPGPGG+GA+LR+ G EK TTNNRMEL AAI L+ALK Sbjct: 1 MQEVELFTDGGCRGNPGPGGWGALLRFGGVEKELKGAELDTTNNRMELTAAIEGLKALKR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V L+TDSQYV+ GITQW+ NWKK WKTA KKPVKN DLWQ LD AL H + W WV Sbjct: 61 PCKVTLTTDSQYVKNGITQWMTNWKKNNWKTAAKKPVKNKDLWQALDEALQPHDVTWAWV 120 Query: 122 KGHAGHPENERCDELARAAAMNPT 145 KGH+GH ENER DELA A T Sbjct: 121 KGHSGHDENERVDELANQAMDELT 144 >UniRef50_A3QET0 Ribonuclease H n=32 Tax=Bacteria RepID=RNH_SHELP Length = 158 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 108/154 (70%), Positives = 125/154 (81%), Gaps = 1/154 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 LKQ+ IFTDGSCLGNPGPGGYG +++Y+ K S G+ TTNNRMEL+A I+ALEALKE Sbjct: 4 LKQLLIFTDGSCLGNPGPGGYGVVMKYKAHVKELSGGFALTTNNRMELLAPIMALEALKE 63 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C++IL++DSQY+RQGITQWIH WKKRGW TA K+PVKNVDLWQRLDAA H+I W WV Sbjct: 64 PCQIILTSDSQYMRQGITQWIHGWKKRGWLTAAKEPVKNVDLWQRLDAATSTHKIDWRWV 123 Query: 122 KGHAGHPENERCDELARAAAM-NPTLEDTGYQVE 154 KGHAGH ENERCD LAR AA P+ DTGYQ + Sbjct: 124 KGHAGHIENERCDTLAREAAEAGPSEVDTGYQAK 157 >UniRef50_Q2J0F8 Ribonuclease H n=19 Tax=Proteobacteria RepID=RNH_RHOP2 Length = 161 Score = 195 bits (495), Expect = 5e-49, Method: Composition-based stats. Identities = 95/138 (68%), Positives = 106/138 (76%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + V I TDG+C GNPGPGG+GAIL++ EK G TTNNRMEL+AAI ALEAL Sbjct: 13 RPVVIHTDGACSGNPGPGGWGAILKFGDTEKELKGGEAHTTNNRMELLAAISALEALTRP 72 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C V L TDSQYV+ GI WIHNWK+ GWKTADKKPVKNVDLWQRLDAAL HQ++W WVK Sbjct: 73 CTVDLYTDSQYVKNGIGSWIHNWKRNGWKTADKKPVKNVDLWQRLDAALKSHQVRWHWVK 132 Query: 123 GHAGHPENERCDELARAA 140 GHAGH ENER D+LAR Sbjct: 133 GHAGHDENERADQLARDG 150 >UniRef50_A1KV38 Ribonuclease H n=98 Tax=cellular organisms RepID=RNH_NEIMF Length = 145 Score = 194 bits (494), Expect = 7e-49, Method: Composition-based stats. Identities = 82/143 (57%), Positives = 100/143 (69%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M V ++TDG+C GNPG GG+G ++RY EK G +TTNNRMEL A I L++LK Sbjct: 1 MDTPVYLYTDGACKGNPGAGGWGVLMRYGSHEKELFGGEAQTTNNRMELTAVIEGLKSLK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C VI+ TDSQYV+ G+ WIH WK+ GWKTA K+PVKN DLW+ LD +GQHQ+ W W Sbjct: 61 RRCTVIICTDSQYVKNGMENWIHGWKRNGWKTAAKQPVKNDDLWKELDTLVGQHQVSWTW 120 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGHAGH ENER D+LA A Sbjct: 121 VKGHAGHAENERADDLANRGAAQ 143 >UniRef50_B0T025 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CAUSK Length = 154 Score = 193 bits (492), Expect = 1e-48, Method: Composition-based stats. Identities = 93/150 (62%), Positives = 111/150 (74%), Gaps = 1/150 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M ++ I+TDG+C GNPGPGG+GA+L Y ++K G TTNNRMELMAAI ALEAL Sbjct: 1 MTPKLVIYTDGACRGNPGPGGWGALLMYGDKKKEIMGGDLATTNNRMELMAAIQALEALN 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + L TDSQYV +G+TQWIH WK +GWKTADK PVKNVDLWQRLDAA +H++ W W Sbjct: 61 KPTKAELHTDSQYVMKGVTQWIHGWKAKGWKTADKSPVKNVDLWQRLDAARARHEVDWRW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTG 150 VKGHAGH NER DELAR + TL + G Sbjct: 121 VKGHAGHVHNERADELARLGML-KTLGERG 149 >UniRef50_Q2Z0V7 Putative Ribonuclease HI n=1 Tax=Pseudomonas phage EL RepID=Q2Z0V7_9CAUD Length = 163 Score = 192 bits (489), Expect = 2e-48, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + I+TDGS LGNPGPGGYG +Y+G E + S GY +TTNNR ELM+ I ALE Sbjct: 7 NDRYVIYTDGSALGNPGPGGYGVYAKYKGEEFSLSKGYYKTTNNRQELMSVIAALEEFGP 66 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTAD-KKPVKNVDLWQRLDAALGQHQIKWEW 120 + +V + TDSQYV + T+W+ W + W + +PVKN DL + L+ L ++++K+ W Sbjct: 67 NIKVDIFTDSQYVIKCATKWMRGWIRNNWMGYNSGQPVKNRDLLEVLNELLKKNKVKFHW 126 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGY 151 VKGH+G NE+ D+LA+ AA NP D Y Sbjct: 127 VKGHSGDEGNEKADQLAKDAANNPEAHDMEY 157 >UniRef50_A0L9H3 RNase HI n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H3_MAGSM Length = 238 Score = 191 bits (485), Expect = 7e-48, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 93/140 (66%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 ++ ++TDG+C GNPGPGG+G RY + +TTNNRME++AAI ALE L E Sbjct: 87 EIILYTDGACSGNPGPGGWGVHGRYGEQMADQMGWAPQTTNNRMEMLAAIHALEPLPEGS 146 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDS YV+ GIT+WIH WK RGWK +D V NVDLW+RLDAA + W+W+KG Sbjct: 147 RVKIITDSAYVKDGITKWIHGWKVRGWKKSDGNTVLNVDLWKRLDAARQNRDVTWQWIKG 206 Query: 124 HAGHPENERCDELARAAAMN 143 HAGH NE+ D LAR A Sbjct: 207 HAGHAGNEQADRLARNAITQ 226 >UniRef50_A0LGJ7 Ribonuclease H n=6 Tax=Proteobacteria RepID=RNH_SYNFM Length = 164 Score = 190 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 87/143 (60%), Positives = 104/143 (72%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 + K VEIF DG+C GNPGPGG+GA+LRY G+EK S TTNN+MEL A I AL ALK Sbjct: 13 IRKHVEIFADGACRGNPGPGGWGAVLRYHGKEKELSGYAEYTTNNQMELAAVIQALRALK 72 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 E C V ++TDS+Y+R GI+ WIH WK+ GWKT K V+N +LW LD A H+I W+W Sbjct: 73 EPCRVTITTDSRYLRDGISLWIHKWKQNGWKTRVKTDVRNKELWIALDEACLPHEIDWQW 132 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGH+GHPENERCD LARAA Sbjct: 133 VKGHSGHPENERCDALARAAIDR 155 >UniRef50_Q2RPU6 Ribonuclease H n=93 Tax=Bacteria RepID=RNH_RHORT Length = 166 Score = 190 bits (482), Expect = 1e-47, Method: Composition-based stats. Identities = 89/147 (60%), Positives = 103/147 (70%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V++FTDG+C GNPGPGG+G ILR+ EK G T TTNNRMELMA I LEAL+ Sbjct: 13 RVDMFTDGACSGNPGPGGWGTILRWGDTEKELWGGETPTTNNRMELMAVIRGLEALRRPV 72 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDS+YV GIT WIH WK+ GWKTA KKPVKN DLW+RLDAALG H I W+WV+G Sbjct: 73 TVTIHTDSRYVHDGITGWIHGWKRNGWKTAAKKPVKNEDLWRRLDAALGTHDISWQWVRG 132 Query: 124 HAGHPENERCDELARAAAMNPTLEDTG 150 H+GH ENER DELAR Sbjct: 133 HSGHVENERADELARRGTSEARQGKVD 159 >UniRef50_Q5NYP6 Ribonuclease H n=2 Tax=Proteobacteria RepID=RNH_AZOSE Length = 153 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 88/142 (61%), Positives = 102/142 (71%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M Q+EIFTDG+C GNPGPGG+GAILR EK G TTNNRMEL+A I ALE LK Sbjct: 1 MTDQIEIFTDGACSGNPGPGGWGAILRSGAHEKEIWGGEPHTTNNRMELLAVIRALELLK 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + TDSQYV++GI++WIH WK RGWKTA K PVKN DLW+ LD A +HQ++W W Sbjct: 61 RPVVARVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNEDLWRALDEAASRHQVQWVW 120 Query: 121 VKGHAGHPENERCDELARAAAM 142 V+GHAGH ENER DELAR Sbjct: 121 VRGHAGHVENERADELARRGVD 142 >UniRef50_B0VKV7 Bifunctional protein n=24 Tax=Proteobacteria RepID=B0VKV7_ACIBS Length = 459 Score = 189 bits (480), Expect = 3e-47, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 87/147 (59%), Gaps = 5/147 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M + + ++ DG+C GNPG GG+GA + E G TTNNRMEL AAI + Sbjct: 1 MSQTITLYVDGACRGNPGLGGWGAYVITEQGEHKLFGGEPDTTNNRMELTAAIEGISFCP 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++I+ TDS YV+QGIT+WIH WKK+ WK VKN DLWQ+LDA I+W W Sbjct: 61 PDAQLIVWTDSNYVKQGITEWIHGWKKKNWK-----DVKNPDLWQKLDAVCAGRNIEWNW 115 Query: 121 VKGHAGHPENERCDELARAAAMNPTLE 147 +KGHAGH NE D+LA A E Sbjct: 116 IKGHAGHAGNEMADQLANLGADKTAQE 142 >UniRef50_D1VE35 Ribonuclease H n=1 Tax=Frankia sp. EuI1c RepID=D1VE35_9ACTO Length = 192 Score = 187 bits (476), Expect = 7e-47, Method: Composition-based stats. Identities = 84/137 (61%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHC 63 VEI+TDG+C GNPGPGG+GA+LRY E+ G TTNNRMELMAAI+ALEAL Sbjct: 47 VEIYTDGACKGNPGPGGWGAVLRYGTHERAICGGEAGDTTNNRMELMAAIMALEALTRPS 106 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDSQY+R GI +W+ WK+ GWKT +KKPVKNVDLWQRLDAA H ++W WV+G Sbjct: 107 VVRIHTDSQYLRSGINEWLARWKRNGWKTGEKKPVKNVDLWQRLDAATRVHDVEWLWVRG 166 Query: 124 HAGHPENERCDELARAA 140 HAG P NE D+LA Sbjct: 167 HAGDPGNELADQLANRG 183 >UniRef50_Q14IN1 Ribonuclease H n=225 Tax=cellular organisms RepID=RNH_FRAT1 Length = 152 Score = 186 bits (473), Expect = 2e-46, Method: Composition-based stats. Identities = 76/141 (53%), Positives = 96/141 (68%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +V +TDG+C GNPG GG+GAIL Y G +K TTNNRMELMAAI L+ALK Sbjct: 8 NRVIAYTDGACKGNPGIGGWGAILSYNGVDKEIYGSEKDTTNNRMELMAAIKTLQALKRK 67 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C++ + TDS+Y++ GI +W+ NWK GWKTA KK VKN DLWQ LD+ +H + W WVK Sbjct: 68 CDITIYTDSKYLQNGINEWLANWKANGWKTAAKKEVKNKDLWQELDSLTNKHNVTWGWVK 127 Query: 123 GHAGHPENERCDELARAAAMN 143 GH+G+ NE+ DELA A Sbjct: 128 GHSGNAGNEKADELANKAIAE 148 >UniRef50_C9KMB8 Ribonuclease HI (Fragment) n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMB8_9FIRM Length = 172 Score = 184 bits (469), Expect = 5e-46, Method: Composition-based stats. Identities = 75/144 (52%), Positives = 92/144 (63%), Gaps = 3/144 (2%) Query: 3 KQVEIFTDGSCLGNP-GPGGYGAIL--RYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 + I+TDGSCL NP GPGG+ A++ G G TTNNRMEL AAI AL Sbjct: 27 QDFVIYTDGSCLRNPDGPGGWAAVIREVATGVVTELHEGSPSTTNNRMELSAAIAALGFP 86 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 K +V L TDSQY++ GIT+W+ WK+RGWK AD +PV N DLWQ LDA +H + + Sbjct: 87 KHPAKVALYTDSQYLKNGITKWMSGWKRRGWKKADGQPVLNQDLWQELDALYSRHDVTFH 146 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 WVKGH G NERCD LA++ AM Sbjct: 147 WVKGHVGVELNERCDRLAKSEAMK 170 >UniRef50_B3EH35 Ribonuclease H n=6 Tax=Bacteria RepID=RNH_CHLL2 Length = 146 Score = 184 bits (469), Expect = 5e-46, Method: Composition-based stats. Identities = 69/144 (47%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M K+V I+TDG+C GNPG GG+GA++ Y + S TTNNRMEL AAI L+ALK Sbjct: 1 MKKRVTIYTDGACSGNPGRGGWGALMMYGTVNRELSGYEPATTNNRMELTAAIEGLDALK 60 Query: 61 EHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E C V L +DS Y+ + Q W+ W W T+ KK V+N+DLW+++ + HQ+ + Sbjct: 61 EPCVVDLYSDSAYLVNALNQGWLKRWTTNNWTTSAKKSVENIDLWKKILKLVTLHQVTFH 120 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 VKGH+ +P N RCDELAR A N Sbjct: 121 KVKGHSDNPFNNRCDELARQAIKN 144 >UniRef50_C8X6F1 Ribonuclease H n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X6F1_NAKMY Length = 235 Score = 184 bits (467), Expect = 9e-46, Method: Composition-based stats. Identities = 68/140 (48%), Positives = 94/140 (67%), Gaps = 1/140 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGR-EKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +++++++DG+C GNPGPGG+GA++R G+ + S G TTNNRMEL A + AL +L Sbjct: 4 QRIQVWSDGACRGNPGPGGWGALIRVPGQPDVELSGGEPATTNNRMELRAVVEALRSLPA 63 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 ++ + DS YV GIT+W+ W++ GW T K+PVKNVDLWQ LD +H + W+WV Sbjct: 64 GSQLTVHADSTYVLNGITKWLAGWRRNGWLTGSKQPVKNVDLWQDLDEQANRHTVDWQWV 123 Query: 122 KGHAGHPENERCDELARAAA 141 KGHAG P NER D LA Sbjct: 124 KGHAGDPGNERADALANEGV 143 >UniRef50_P29253 Ribonuclease H n=100 Tax=Bacteria RepID=RNH_THET8 Length = 166 Score = 183 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 81/148 (54%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K+V +FTDG+CLGNPGPGG+ A+LR+ EK S G TTNNRMEL AAI L+ALKE Sbjct: 6 RKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE 65 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 CEV L TDS Y+++ T+ W+ W+KRGW+TA+ KPVKN DLW+ L A+ H++++ + Sbjct: 66 PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHF 125 Query: 121 VKGHAGHPENERCDELARAAAMNPTLED 148 VKGH GHPENER D AR A + Sbjct: 126 VKGHTGHPENERVDREARRQAQSQAKTP 153 >UniRef50_A5CEP5 Ribonuclease H n=33 Tax=cellular organisms RepID=RNH_ORITB Length = 168 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 89/137 (64%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 V+I+TDG+C NPGPGG+G L Y+ EK TTNNRMEL A I AL LK Sbjct: 13 PVKIYTDGACSHNPGPGGWGVYLSYKNHEKKVYGSNINTTNNRMELTATIEALRLLKHSY 72 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 +V L TDSQYV+ GIT+WI W K W+T++K+ V NVDLWQ L + +HQ+ W WV+G Sbjct: 73 KVELYTDSQYVQMGITKWIKKWIKNNWETSNKQLVCNVDLWQLLYTLIQKHQVSWHWVRG 132 Query: 124 HAGHPENERCDELARAA 140 H+G+ NE D+LA Sbjct: 133 HSGNIGNEIADKLATNG 149 >UniRef50_C6WBP3 Ribonuclease H n=9 Tax=Bacteria RepID=C6WBP3_ACTMD Length = 185 Score = 182 bits (463), Expect = 2e-45, Method: Composition-based stats. Identities = 78/142 (54%), Positives = 93/142 (65%), Gaps = 2/142 (1%) Query: 1 MLKQ-VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEA 58 M V+I+TDG+C NPGPGG+G +LRY E+ G TTNNRMEL A I AL+A Sbjct: 1 MNDPGVDIYTDGACRPNPGPGGWGVLLRYGAHERELCGGEAGVTTNNRMELTAPIRALDA 60 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 L V L TDS YVR GITQWI WK +GW T K+PVKN DLW+ LD A +H+++W Sbjct: 61 LTRPSVVRLHTDSTYVRNGITQWIKGWKAKGWLTKGKEPVKNADLWRELDRATARHRVEW 120 Query: 119 EWVKGHAGHPENERCDELARAA 140 WVKGHAG NER D+LA Sbjct: 121 RWVKGHAGDEGNERADQLAERG 142 >UniRef50_Q2LWY9 Ribonuclease H n=7 Tax=Bacteria RepID=RNH_SYNAS Length = 173 Score = 181 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 KQV I+TDG+CLGNPGPGGYG +L Y K S GY TTNNRME++AAI LEALK Sbjct: 22 KQVIIYTDGACLGNPGPGGYGVVLLYGEHRKELSGGYRLTTNNRMEILAAIKGLEALKSA 81 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L +DSQY+ I + W WK GWK ++ N DLW+RL +H I + WV Sbjct: 82 CSVTLYSDSQYLVNAINKGWAQRWKANGWKRNAREKALNPDLWERLLELCSRHDITFVWV 141 Query: 122 KGHAGHPENERCDELARAAAMNPTLE-DTGY 151 +GHA + ENERCD L++ AA L+ D GY Sbjct: 142 RGHANNKENERCDVLSKEAAGRADLKADPGY 172 >UniRef50_C8PYA8 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PYA8_9GAMM Length = 595 Score = 181 bits (460), Expect = 5e-45, Method: Composition-based stats. Identities = 67/143 (46%), Positives = 85/143 (59%), Gaps = 6/143 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 +TDG+C GNPG GG+GA++ G + G TTNNRMELM AI ALE + + Sbjct: 41 AYTDGACRGNPGKGGFGAVVILPTGEQIDICGGEAHTTNNRMELMGAIAALENSPKALPI 100 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHA 125 + +DS YV +GI++W+ WKK+ WK VKNV+LWQRLD Q QI W+WVKGHA Sbjct: 101 QIWSDSSYVIKGISEWLAGWKKKHWKN-----VKNVELWQRLDKLCEQRQIDWQWVKGHA 155 Query: 126 GHPENERCDELARAAAMNPTLED 148 GH NE D+LA Sbjct: 156 GHDGNEYADKLANQGIDQLPKSF 178 >UniRef50_B0K9M0 Ribonuclease H n=14 Tax=Bacteria RepID=RNH_THEP3 Length = 155 Score = 180 bits (457), Expect = 1e-44, Method: Composition-based stats. Identities = 68/152 (44%), Positives = 88/152 (57%), Gaps = 4/152 (2%) Query: 1 MLKQV---EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 M + EI+TDG+C GNPGPGG+ A+L Y+G +K S TTNNRMEL A I L+ Sbjct: 1 MSNNIDVVEIYTDGACSGNPGPGGWAAVLLYKGTKKEISGFEENTTNNRMELKAVIEGLK 60 Query: 58 ALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 ALK C+V L +DS YV + W+ W+K W +DK PV+N DLW+ L HQ+ Sbjct: 61 ALKRPCKVNLYSDSSYVINAFKEGWLEKWQKNNWLKSDKTPVENQDLWKELLEISKNHQV 120 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLED 148 W VKGHA + N CD LA T ++ Sbjct: 121 NWIKVKGHADNEYNNLCDRLATEQIKRNTRQN 152 >UniRef50_A9WK52 Ribonuclease H n=11 Tax=Bacteria RepID=A9WK52_CHLAA Length = 264 Score = 180 bits (457), Expect = 1e-44, Method: Composition-based stats. Identities = 75/152 (49%), Positives = 97/152 (63%), Gaps = 2/152 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V ++TDGS LGNPGPGGYG +LRY + + G+ TTNNRMELMA IV L ALK Sbjct: 109 VMMYTDGSALGNPGPGGYGVVLRYNDHYQELTGGFRLTTNNRMELMACIVGLRALKRPVS 168 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V L +DS+YV + WIH W+ + W ++ +PVKN DLW L HQ+++ WV G Sbjct: 169 VRLHSDSRYVVDAFRKGWIHRWQAQNWMRSETEPVKNADLWAELRLLCEGHQVEFVWVPG 228 Query: 124 HAGHPENERCDELARAAAMNPTL-EDTGYQVE 154 H G P+NERC ELA AAA P L D ++++ Sbjct: 229 HQGVPDNERCHELAIAAAARPDLPPDVAFEMQ 260 >UniRef50_Q5FG88 Ribonuclease H n=4 Tax=Rickettsiales RepID=RNH_EHRRG Length = 146 Score = 179 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 73/137 (53%), Positives = 93/137 (67%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 L +V ++TDG+C GNPGPGG+GA+L + EKT G+ TTNNRMEL A + AL+ L Sbjct: 5 LNKVVVYTDGACSGNPGPGGWGAVLLFDNGEKTICGGHPNTTNNRMELTAVVQALKFLDV 64 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + L TDS YV+ GIT WI WK GW+TADK PVKN++LW LD + H+I W WV Sbjct: 65 TYVIDLYTDSVYVKSGITSWIKKWKINGWRTADKLPVKNLELWLELDKIVKYHKITWYWV 124 Query: 122 KGHAGHPENERCDELAR 138 K H+G+ NE+ D LAR Sbjct: 125 KAHSGNLYNEKADMLAR 141 >UniRef50_C9LX49 Ribonuclease H n=2 Tax=Selenomonas RepID=C9LX49_9FIRM Length = 234 Score = 179 bits (454), Expect = 3e-44, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 92/140 (65%), Gaps = 2/140 (1%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++TDGSCL NP GPGG+ + G E +T S G TTNNRME+ AAI AL L + Sbjct: 92 CHVYTDGSCLRNPNGPGGWAVCIVRPGEEMETLSGGNPSTTNNRMEMTAAIEALRHLPKR 151 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 ++LSTDSQY++ GIT+WI +WK+RGWK AD PV N +LWQ LD + I + WVK Sbjct: 152 EPIVLSTDSQYLKNGITKWIFSWKRRGWKKADGTPVLNQELWQELDGLIAGRSIIFRWVK 211 Query: 123 GHAGHPENERCDELARAAAM 142 GHAGH NE CD LA+ A Sbjct: 212 GHAGHKYNEICDMLAKREAQ 231 >UniRef50_Q5PBQ8 Ribonuclease H n=10 Tax=Bacteria RepID=RNH_ANAMM Length = 154 Score = 178 bits (452), Expect = 5e-44, Method: Composition-based stats. Identities = 76/136 (55%), Positives = 94/136 (69%), Gaps = 1/136 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +V I+TDG+C GNPGPGG+GA+LR+ G E+ S G TTNNRMEL A I+AL AL Sbjct: 8 RVAIYTDGACSGNPGPGGWGAVLRFGDGGERRISGGSDDTTNNRMELTAVIMALAALSGP 67 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 C V ++TDS YV+ GIT+WI WK GW+T++K VKNVDLW L+ H I+W WVK Sbjct: 68 CSVCVNTDSTYVKNGITEWIRKWKLNGWRTSNKSAVKNVDLWVELERLTLLHSIEWRWVK 127 Query: 123 GHAGHPENERCDELAR 138 HAG+ NE D LAR Sbjct: 128 AHAGNEYNEEADMLAR 143 >UniRef50_Q2RKU0 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_MOOTA Length = 152 Score = 178 bits (452), Expect = 5e-44, Method: Composition-based stats. Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 1/135 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C GNPGPGG+GA+L Y + K S TTN RME+ AAI AL LKE Sbjct: 1 MKEVTIYTDGACSGNPGPGGWGAVLIYGDKRKELSGAEPSTTNQRMEITAAIAALRVLKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C V L +DS Y+ Q W+ W++ GW T K+PV+N DLW+ L +HQ++W Sbjct: 61 PCRVHLYSDSAYLVNAFRQGWLARWERNGWLTVKKQPVENQDLWRELLQVASRHQVEWLK 120 Query: 121 VKGHAGHPENERCDE 135 VKGH+ +PEN RCDE Sbjct: 121 VKGHSDNPENNRCDE 135 >UniRef50_B7JVG1 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CYAP8 Length = 163 Score = 178 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 95/152 (62%), Gaps = 2/152 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 K+V I+TDG+C GNPG GGYG +L Y K S G+ TTNNRME+MAAIV LE L Sbjct: 6 KKVLIYTDGACSGNPGSGGYGTVLIYNNHRKELSGGFRLTTNNRMEMMAAIVGLETLTIK 65 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L TDS+Y+ IT+ W WK GWK K+ KN DLW++L QH++ + WV Sbjct: 66 CAVTLYTDSRYLVDAITKGWAKKWKANGWKRNAKENAKNPDLWEKLLDLCSQHEVDFVWV 125 Query: 122 KGHAGHPENERCDELARAAAMNPTLE-DTGYQ 152 KGHAGH ENE CD LA A+ L D Y+ Sbjct: 126 KGHAGHQENEYCDRLAVRASQQTNLPSDEVYE 157 >UniRef50_A6C006 Ribonuclease H n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C006_9PLAN Length = 164 Score = 177 bits (450), Expect = 9e-44, Method: Composition-based stats. Identities = 77/144 (53%), Positives = 99/144 (68%), Gaps = 5/144 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYR--GREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 V+IFTDG+C GNPGPGG+G ILR+ G EK FS G TTNN+MEL A I LE LK Sbjct: 14 VQIFTDGACRGNPGPGGWGVILRHPATGTEKEFSGGEAVTTNNQMELQAVISGLELLKRT 73 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADK---KPVKNVDLWQRLDAALGQHQIKWE 119 V + TDS YV +G +W+ NWKK W+ + KPVKN +LW++LD L +H++++ Sbjct: 74 SRVEVITDSVYVAKGSKEWMPNWKKNNWRRREGKSWKPVKNEELWRKLDVLLERHEVRFT 133 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 +KGH+GHPENERCDELA A+ Sbjct: 134 QIKGHSGHPENERCDELAVEFALK 157 >UniRef50_A9B1F3 Ribonuclease H n=2 Tax=Bacteria RepID=A9B1F3_HERA2 Length = 236 Score = 176 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 73/151 (48%), Positives = 93/151 (61%), Gaps = 3/151 (1%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +F+DG GNPGPGGYG +LR + + G+ RTTNNRMELM I L+AL + Sbjct: 86 KVVLFSDGGSDGNPGPGGYGVVLRSGSEMRELTGGFARTTNNRMELMGVITGLQALSQPS 145 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 +V++ +DS YV G+ + W W K GW+T PVKN DLWQ+L H I+W V Sbjct: 146 KVVVYSDSAYVINGMHKGWAERWSKNGWRTTTG-PVKNPDLWQQLLELAQGHTIEWVQVP 204 Query: 123 GHAGHPENERCDELARAAAMNPTLE-DTGYQ 152 GHAG +NERCD LA AA P L D GY+ Sbjct: 205 GHAGVKDNERCDRLAVQAAHQPNLPIDQGYR 235 >UniRef50_A3DD79 Ribonuclease H n=12 Tax=Bacteria RepID=RNH_CLOTH Length = 147 Score = 176 bits (447), Expect = 2e-43, Method: Composition-based stats. Identities = 75/143 (52%), Positives = 96/143 (67%), Gaps = 1/143 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C GNPG GG+GAIL Y EK S TTNNRMEL+AAI AL+ LKE Sbjct: 1 MKKVSIYTDGACSGNPGDGGWGAILIYGNHEKEVSGFEKDTTNNRMELVAAINALKMLKE 60 Query: 62 HCEVILSTDSQYVRQG-ITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 CEV L +DS Y+ G + W+ WKK GWKT++K+ VKN++LWQ LD H+I+W Sbjct: 61 PCEVDLYSDSAYLVNGFLQNWVEKWKKNGWKTSNKEEVKNMELWQELDRLSNIHKIRWIK 120 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGH+ + N RCD+LA Sbjct: 121 VKGHSDNEYNNRCDKLATDEIKK 143 >UniRef50_A7FR34 Ribonuclease H n=11 Tax=Firmicutes RepID=RNH_CLOB1 Length = 149 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 67/146 (45%), Positives = 88/146 (60%), Gaps = 4/146 (2%) Query: 2 LKQVEIFTDGSCLGNPG---PGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 +K+V I+TDG+C GN G YG +L Y +K + TTNN MEL A + AL Sbjct: 1 MKKVIIYTDGACRGNGQENTIGAYGIVLMYGEHKKEIKKAFRDTTNNIMELSAVVEALSL 60 Query: 59 LKEHCEVILSTDSQYVRQGIT-QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 LKE C + L +DS YV I +W+ NWKK WKTA K PVKN +LW++LD L +H +K Sbjct: 61 LKEPCSIELYSDSAYVINAINQKWLDNWKKNNWKTASKSPVKNKELWEKLDELLKKHSVK 120 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 + VKGH+ + N RCD+LA A Sbjct: 121 FIKVKGHSDNEYNNRCDKLANEAMDE 146 >UniRef50_A4XKQ3 Ribonuclease H n=2 Tax=Bacteria RepID=RNH_CALS8 Length = 145 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 72/145 (49%), Positives = 93/145 (64%), Gaps = 1/145 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +K+V I+TDG+C NPGPGG+ AIL Y+G +K TTNNRMEL A I L+ALKE Sbjct: 1 MKEVVIYTDGACSKNPGPGGWCAILIYKGIKKVLKGFEENTTNNRMELKAIIEGLKALKE 60 Query: 62 HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 C+V + TDS Y+ I Q WI W+K WKT++K+ VKN+DLWQ L L H +K+E Sbjct: 61 PCKVTVYTDSAYIVNAINQNWIGKWQKNNWKTSEKEEVKNIDLWQELLEFLKVHNVKFEK 120 Query: 121 VKGHAGHPENERCDELARAAAMNPT 145 VKGH+ N CDE+AR+ Sbjct: 121 VKGHSTDTLNNMCDEIARSMIKEMR 145 >UniRef50_C2D756 Ribonuclease H n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D756_9ACTN Length = 183 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 84/146 (57%), Positives = 103/146 (70%), Gaps = 6/146 (4%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRG-----REKTFSAGYTRTTNNRMELMAAIVALE 57 QV I+TDGS GNPGPGGYGA++ + ++ S GY +TTNNRMEL+A I+ALE Sbjct: 22 PQVIIWTDGSSRGNPGPGGYGAVMLFYDSAGREHKRELSCGYRQTTNNRMELLAPIIALE 81 Query: 58 ALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 LK C+V L +DSQYV Q WI W+KRGWKTA+K+PVKNVDLW+RL A+ H++ Sbjct: 82 ELKYPCKVELHSDSQYVIHAFQQHWIDGWQKRGWKTANKQPVKNVDLWKRLLRAMQPHEM 141 Query: 117 KWEWVKGHAGHPENERCDELARAAAM 142 + WVKGHAG NERCDELA AA Sbjct: 142 SFVWVKGHAGTELNERCDELATTAAD 167 >UniRef50_A2FNB2 RNase H family protein n=1 Tax=Trichomonas vaginalis RepID=A2FNB2_TRIVA Length = 280 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K V+++TDG+C GNPGPGG+G + G G TTN RMELMAAI + Sbjct: 16 SKPVDVYTDGACSGNPGPGGWGVFCQQNGNSYKLGGGSKDTTNQRMELMAAIEGISLFPR 75 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + + TDS+YV GIT W+ WK RGWK +D V N++LW+RLD H + W+WV Sbjct: 76 CFSLNVYTDSKYVFNGITDWVRGWKSRGWKKSDGGKVLNLELWKRLDQVNSDHTVSWKWV 135 Query: 122 KGHAGHPENERCDELARAAAMNPTLEDTGY 151 KGH+ + N D++A A N T D + Sbjct: 136 KGHSVNHGNNMADQIAVANIPN-TKSDYNF 164 >UniRef50_C5GNS4 RNase H domain-containing protein n=4 Tax=Onygenales RepID=C5GNS4_AJEDR Length = 434 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 74/152 (48%), Gaps = 9/152 (5%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEAL 59 ++I+TDGS L N G I Y G + R TN R EL A I AL+ Sbjct: 242 PLKIYTDGSSLRNGAMGAKAGIGVYFGPGDERNVSEPLKGSRQTNQRAELTAIIRALDIA 301 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK-- 117 H +V + TDS+Y +T W NW++ W TA KPV+N DL Q + + + + Sbjct: 302 PRHRDVTIFTDSKYAINCVTVWFVNWQRNKWMTAQDKPVENKDLIQSILMKIEERTVMNV 361 Query: 118 ---WEWVKGHAGHPENERCDELARAAAMNPTL 146 +EWV+GH+ P NE D LA A N L Sbjct: 362 KTLFEWVRGHSRDPGNEAADRLAVNGAKNAPL 393 >UniRef50_Q2S3C1 RNase H n=3 Tax=Bacteria RepID=Q2S3C1_SALRD Length = 194 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 84/147 (57%), Gaps = 4/147 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGR---EKTFSAGYTRTTNNRMELMAAIVALE 57 + +V I+TDG+C GNPGPGG+ AIL + G TTNNRMEL AA+ AL Sbjct: 46 FMNEVTIYTDGACSGNPGPGGWAAILLPDDDSDATDPLTGGEPHTTNNRMELTAALEALR 105 Query: 58 ALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 AL + V L TDS+Y+ + + W+ +W+ W+T+ VKN DLW+ L +H++ Sbjct: 106 ALDDRSRVALHTDSEYLSKAFNEGWLDSWQDNNWQTSSNDDVKNQDLWKALLEEADRHEV 165 Query: 117 KWEWVKGHAGHPENERCDELARAAAMN 143 W WVKGHA N DELA AA Sbjct: 166 DWVWVKGHADDELNIMADELAVAAMEQ 192 >UniRef50_UPI0000587365 PREDICTED: similar to Ribonuclease H1 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587365 Length = 234 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 79/153 (51%), Gaps = 6/153 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEAL 59 + ++TDG+C N G + Y G + + TN R EL AA+ ALE + Sbjct: 82 DNLVVYTDGACSHNGFSGAKAGLGVYWGDNHPLNTSARLEGKQTNQRAELTAALRALEQI 141 Query: 60 KEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 EH + V L TDS+Y +T WIH WKK GWKTA K V N + +LD + + Sbjct: 142 NEHHKRRKVTLYTDSKYTINCVTDWIHRWKKNGWKTAQKTDVINKEDLVKLDKLNRELDV 201 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDT 149 KWE+V GH NER D+LAR A P L ++ Sbjct: 202 KWEYVPGHKNVYGNERADKLAREGAAQPLLGNS 234 >UniRef50_A9W185 Ribonuclease H n=9 Tax=Alphaproteobacteria RepID=RNH_METEP Length = 228 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 64/141 (45%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + ++ DG C NPGPGG+ A+++ G TTNNRMEL AAI ALE E Sbjct: 5 RTIVYADGGCDPNPGPGGWAAVIQAPTGTIELYGGELATTNNRMELTAAIRALEHFPEGA 64 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DSQYV + +T+W+ WK RGW+TA PVKN+DL QRLDA ++W WV+G Sbjct: 65 AIEMRCDSQYVVKSVTEWMRGWKARGWRTATG-PVKNIDLMQRLDALAAARDVRWTWVRG 123 Query: 124 HAGHPENERCDELARAAAMNP 144 HAG NER D LA Sbjct: 124 HAGEAGNERADRLATLGRREA 144 >UniRef50_A7SAK2 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SAK2_NEMVE Length = 272 Score = 171 bits (434), Expect = 7e-42, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 5/150 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEA 58 + ++TDG C N G + Y G + R TN R E++AA +ALE+ Sbjct: 123 RDRPVVYTDGCCTRNGFSGAKAGVGVYWGPNHKRNISERLPGRQTNQRAEIVAATMALES 182 Query: 59 LKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 KE +V + TDS+Y G+T WI +WKK GWKTAD K VKN++ +Q+LD + + Sbjct: 183 AKEMGFTKVEIRTDSKYTINGMTSWIRSWKKNGWKTADNKDVKNLEDFQKLDKLCSEIDV 242 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTL 146 W V GHAG NE D+LA+ A + Sbjct: 243 HWTHVAGHAGIEGNEIADQLAKGGADKSPV 272 >UniRef50_A5GAH5 Ribonuclease H n=6 Tax=Desulfuromonadales RepID=A5GAH5_GEOUR Length = 484 Score = 171 bits (433), Expect = 8e-42, Method: Composition-based stats. Identities = 68/138 (49%), Positives = 89/138 (64%), Gaps = 2/138 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+ DGS + GPGGYG ILRY EK S +T+ RMEL AAI LEAL + Sbjct: 292 VEIYCDGSGR-DSGPGGYGVILRYGEHEKELSGFEAASTSQRMELTAAIRGLEALHKPRR 350 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V + +DSQY+ +G+++W+H W + G + +KN DLWQ+L A H++ WEWV+GH Sbjct: 351 VRVFSDSQYLVRGMSEWLHGWIRTG-RLETPDALKNQDLWQKLSALSANHEVTWEWVRGH 409 Query: 125 AGHPENERCDELARAAAM 142 GHP NERCD LA+ AA Sbjct: 410 DGHPFNERCDRLAKRAAE 427 >UniRef50_B6BTS2 RNase H n=1 Tax=beta proteobacterium KB13 RepID=B6BTS2_9PROT Length = 149 Score = 170 bits (432), Expect = 1e-41, Method: Composition-based stats. Identities = 69/141 (48%), Positives = 85/141 (60%), Gaps = 4/141 (2%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGRE-KTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +I+TDGSC GNPGPGG+ I+ K S +TTNN+MEL AAI L EH Sbjct: 2 SFKIYTDGSCHGNPGPGGWAFIVVANDEVVKEKSGSMEKTTNNQMELSAAIQGLFYFNEH 61 Query: 63 ---CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 EV L TDS+YV GI WIH WKK W+T+ KKPVKN +LW+ LD + + W Sbjct: 62 VESKEVELFTDSKYVIDGINSWIHGWKKNNWRTSTKKPVKNEELWRTLDELNSKLTVNWI 121 Query: 120 WVKGHAGHPENERCDELARAA 140 WVKGH+G N++ D LA A Sbjct: 122 WVKGHSGDIFNDKVDLLANYA 142 >UniRef50_Q5N0R7 Ribonuclease H n=3 Tax=Cyanobacteria RepID=Q5N0R7_SYNP6 Length = 261 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 6/152 (3%) Query: 1 MLKQVE-IFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEA 58 M + ++TDG+C GNPGPGG+G +++ G + TTNNRMEL AAI ALE Sbjct: 3 MSDAILRLYTDGACTGNPGPGGWGVQIQFADGTVQELGGRDAATTNNRMELQAAIAALEF 62 Query: 59 LKEHC---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 ++H V L TDS+YV +GITQW+ W+++GWKTA KPV N DLW LD Sbjct: 63 WRDHSDQQPVTLYTDSEYVIKGITQWLKGWQRKGWKTAAGKPVLNQDLWMHLDDL-NSPA 121 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 +W++V+GH+G P NERCD++AR+ A L Sbjct: 122 AQWQYVRGHSGDPGNERCDQIARSFAQQRPLP 153 >UniRef50_C8VF62 Ribonuclease H, putative (AFU_orthologue; AFUA_1G07180) n=2 Tax=Emericella nidulans RepID=C8VF62_EMENI Length = 463 Score = 169 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 11/160 (6%) Query: 5 VEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYT--RTTNNRMELMAAIVALEAL 59 + I+TDGS L N G G + S R TN R EL A + AL+ Sbjct: 280 LRIYTDGSSLRNGRVQAMAGVGVYFGPGDSRRNVSEPLKGSRQTNQRAELTAILRALDIA 339 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH---QI 116 H +V + TDSQY +T W W+ W TADKKPV+N DL + + + + + ++ Sbjct: 340 PRHRDVTIVTDSQYAINCVTVWFQKWRSNNWLTADKKPVENKDLVESILSKIDERTELRV 399 Query: 117 K--WEWVKGHAGHPENERCDELARAAAMN-PTLEDTGYQV 153 K +EWVKGH P NE D LA A + ++ GY + Sbjct: 400 KTLFEWVKGHDADPGNEAADRLAVNGAQRGASEQELGYDI 439 >UniRef50_A2QPK3 Contig An07c0360, complete genome n=16 Tax=Eurotiomycetidae RepID=A2QPK3_ASPNC Length = 410 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 9/148 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 + I+TDGS L N + Y G + + R TN R EL A + AL+ Sbjct: 236 LRIYTDGSSLKNGKALASAGVGVYFGPGDSRNVSEPLKGSRQTNQRAELTAILRALDIAP 295 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH---QIK 117 H +V + TDSQY +T W W++ W TA KPV N DL + + + + + ++K Sbjct: 296 RHRDVTIFTDSQYAINCVTVWFTKWRRNNWMTAGNKPVDNKDLVESILSKIEERNELKVK 355 Query: 118 --WEWVKGHAGHPENERCDELARAAAMN 143 +EWVKGH+ HP NE D LA + A Sbjct: 356 TLFEWVKGHSSHPGNEAADRLAVSGARR 383 >UniRef50_Q8DM24 Ribonuclease H n=27 Tax=Cyanobacteria RepID=RNH_THEEB Length = 159 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 72/144 (50%), Positives = 91/144 (63%), Gaps = 5/144 (3%) Query: 7 IFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVAL---EALKEH 62 I+TDG+C GNPGPGG+G ++ + G + TTNNRMEL AAI AL L Sbjct: 7 IYTDGACEGNPGPGGWGVVIYFTDGSVHELGGHHPATTNNRMELQAAIEALKAWRQLAPG 66 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + L TDS+YV +GIT+WIH+WK+RGWKTA KKPV N DLWQ LDA ++W V+ Sbjct: 67 SAIALYTDSEYVLRGITEWIHHWKRRGWKTAAKKPVLNQDLWQELDALNDPL-VQWHHVR 125 Query: 123 GHAGHPENERCDELARAAAMNPTL 146 GH G NERCD +AR + + Sbjct: 126 GHRGDVGNERCDLIARRLSRGQPI 149 >UniRef50_Q17XJ7 Ribonuclease H n=15 Tax=Campylobacterales RepID=RNH_HELAH Length = 143 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 72/142 (50%), Positives = 89/142 (62%), Gaps = 5/142 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 ++++EIF DGS LGNPGPGGY AILRY+ +EK S G TTNNRMEL A AL+ LK Sbjct: 1 MQEIEIFCDGSSLGNPGPGGYAAILRYKDKEKIISGGEKFTTNNRMELRALNEALKILKR 60 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C + L +DSQYV Q I W+ W+K+ + VKNVDLW+ H I W+ Sbjct: 61 PCHITLYSDSQYVCQAINVWLIGWQKKNF-----AKVKNVDLWKEFLEVSKGHSIVAIWI 115 Query: 122 KGHAGHPENERCDELARAAAMN 143 KGH GH +NERCD LA+ A Sbjct: 116 KGHNGHAQNERCDSLAKLEAQK 137 >UniRef50_A8ZXF3 Ribonuclease H n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXF3_DESOH Length = 192 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 90/154 (58%), Gaps = 8/154 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + ++TDGS +GNPGPGGYG +++ K S GY TTNNRMELMA IVAL L++ Sbjct: 40 NAIIVYTDGSAIGNPGPGGYGVVIKGG---KEISGGYKLTTNNRMELMAVIVALRELQDD 96 Query: 63 --CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 +++ +DS+YV I + W+ WK+ W + V N DLW++ + +++ Sbjct: 97 DERPIVIYSDSKYVVDSINKGWVLGWKENKWAVTNGTRV-NSDLWKKFLRLRSKVDVEFR 155 Query: 120 WVKGHAGHPENERCDELARAAAMNPTLE-DTGYQ 152 WVKGHA P N + D+LA +AA L D GY Sbjct: 156 WVKGHATDPLNIKADQLANSAARQKRLSHDKGYD 189 >UniRef50_D2R4V0 Ribonuclease H n=2 Tax=Planctomycetaceae RepID=D2R4V0_9PLAN Length = 157 Score = 167 bits (424), Expect = 8e-41, Method: Composition-based stats. Identities = 76/143 (53%), Positives = 100/143 (69%), Gaps = 5/143 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +V +FTDG+C GNPGPGG+ ILR+ G+EK S G TTNNRMEL A + L AL Sbjct: 9 EVLLFTDGACSGNPGPGGWAYILRHVASGKEKECSGGELETTNNRMELTAVVEGLRALTR 68 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTA---DKKPVKNVDLWQRLDAALGQHQIKW 118 V + TDS+YVR+G+++W+ WK+ GW+ KPVKNVDLW++LD + +HQ+K Sbjct: 69 TTAVEVLTDSEYVRKGMSEWMAGWKRNGWQRKENGKLKPVKNVDLWKQLDELVAKHQLKL 128 Query: 119 EWVKGHAGHPENERCDELARAAA 141 V GH+GHPEN+RCDELA AA+ Sbjct: 129 TRVAGHSGHPENDRCDELAVAAS 151 >UniRef50_D2XAD4 Ribonuclease H n=1 Tax=Marseillevirus RepID=D2XAD4_9VIRU Length = 141 Score = 167 bits (424), Expect = 9e-41, Method: Composition-based stats. Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 2/140 (1%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREK-TFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +I+TDGSCL NPG GGYG ++ T S TTNN+ E A IVAL L E E Sbjct: 3 QIYTDGSCLKNPGKGGYGVVITRNDEVLSTLSGHMAETTNNQAEAAACIVALSWLSEPTE 62 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V + +DS+YV GIT+WI WKK GW+TA+KKPV N + W LD +H++ W WV Sbjct: 63 VEICSDSKYVVDGITKWIGGWKKNGWRTANKKPVLNKEFWLELDRLNSKHKVTWTWV-AR 121 Query: 125 AGHPENERCDELARAAAMNP 144 + H N D+LA AA Sbjct: 122 SSHEFNVMADKLANDAAKEK 141 >UniRef50_A7NII6 Ribonuclease H n=3 Tax=Bacteria RepID=A7NII6_ROSCS Length = 245 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 +V +FTDG G GGYG IL++R R K S G+ TTNNRME+ A I L ALK Sbjct: 95 KVVMFTDGCFDSESGSGGYGVILKHRDRTKEISGGFRETTNNRMEIRACIEGLRALKRPS 154 Query: 64 EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 EV++ +DS+YV +++ W+ WK +GW +K +N DLW++L QH++++ WVK Sbjct: 155 EVVIFSDSKYVVDSMSKGWVQRWKDQGWMRNEKDQAENSDLWEQLLELCNQHRVEFRWVK 214 Query: 123 GHAGHPENERCDELARAAAMNPTLE 147 GH ENERCD+LA AA L Sbjct: 215 GHNHTKENERCDQLASEAAKRSDLP 239 >UniRef50_B2S2V0 Ribonuclease H n=4 Tax=Bacteria RepID=RNH_TREPS Length = 169 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 89/161 (55%), Gaps = 15/161 (9%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRG-------------REKTFSAGYTRTTNNRMELMA 51 + ++TDG+CLGNPGPGG+ L T S +TNNRMEL A Sbjct: 7 LTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTRSGSAYPSTNNRMELCA 66 Query: 52 AIVALEALKEHCE--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 I AL+ V++ TDSQYVR+GITQWIH WK GWKTA K+PVKN DLW+ L A Sbjct: 67 VINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWEALSA 126 Query: 110 ALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 ++W WVKGHAG P NE CD LA AA Sbjct: 127 LADALSVEWRWVKGHAGDPYNELCDRLATDAARRAAQSTAD 167 >UniRef50_B7J4E2 Ribonuclease H n=2 Tax=Acidithiobacillus ferrooxidans RepID=RNH_ACIF2 Length = 158 Score = 165 bits (418), Expect = 4e-40, Method: Composition-based stats. Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 1/144 (0%) Query: 1 MLKQVE-IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 M +++ +FTDG C GNPG G +G LR G+E+ TTNNRMEL AA+ LEAL Sbjct: 1 MPEKIIELFTDGGCRGNPGIGAWGVWLRLAGQERVLWGFVPETTNNRMELTAALRGLEAL 60 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 K V + +DS+Y+R G+TQW+ W++RGW+TA VKN D+W+ L A +HQ++WE Sbjct: 61 KRPSAVRVISDSRYLRDGMTQWLAGWQRRGWRTAGGDAVKNRDIWELLAAVAARHQVQWE 120 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 WV+GH+GH ENER D L Sbjct: 121 WVRGHSGHIENERVDALLNRVMDQ 144 >UniRef50_C1BKT9 Ribonuclease H1 n=5 Tax=Euteleostomi RepID=C1BKT9_OSMMO Length = 306 Score = 164 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 5/148 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALE 57 M V ++TDG C GN G I Y GR+ + R TN R EL AA ALE Sbjct: 148 MGDAVVVYTDGCCSGNGRIGARAGIGVYWGRDHPLNVAEPLDGRQTNQRAELQAACKALE 207 Query: 58 ALKEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 KE +++L TDS++ G+T W+ NWK GW+ V N + +Q+LD G+ + Sbjct: 208 QAKEMNIKKLVLYTDSKFTINGVTSWVKNWKLNGWRLNSGGHVINKEDFQKLDKLNGEVE 267 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMN 143 + W V GHAG+ NE D L+R A Sbjct: 268 VVWLHVPGHAGYLGNEEADRLSRVGASK 295 >UniRef50_A5US20 Ribonuclease H n=2 Tax=Bacteria RepID=A5US20_ROSS1 Length = 214 Score = 164 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 1/138 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +EIFTDG+C GNPGPGG+ A++ G RTTNNRMEL AA+ AL + + Sbjct: 2 IEIFTDGACRGNPGPGGWAAVIVQNGEVIEIGGAEERTTNNRMELRAAVEALRRVPPNAP 61 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L+TDS+Y+ G T W+ WKKR W T ++ PV++ DLW+ LDA Q + W++V+GH Sbjct: 62 VRLTTDSEYLLHGATHWLLLWKKRNWLTTEQTPVEHRDLWEELDALADQR-VTWQYVRGH 120 Query: 125 AGHPENERCDELARAAAM 142 +G P NER + LA+A A Sbjct: 121 SGDPWNERANTLAQAYAD 138 >UniRef50_C5EB64 Ribonuclease H n=2 Tax=Bifidobacterium longum RepID=C5EB64_BIFLO Length = 345 Score = 164 bits (416), Expect = 7e-40, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 82/168 (48%), Gaps = 20/168 (11%) Query: 5 VEIFTDGSCLGNP-GPGGYGAI----------LRYRGREKTFSAGYTRTTNNRMELMAAI 53 + + TDGS LGNP GP G+ + G T TN EL A + Sbjct: 52 ITVSTDGSALGNPNGPMGWAWADHEQNAGGKPGHKHDDHGYDAGGATNGTNQIGELCAVL 111 Query: 54 VALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ 113 AL A +++ +DSQY T+W+ WKK GWK + KKPVKN +L Q +D + Q Sbjct: 112 EALRAHPGPEPLLIESDSQYAINCSTKWVKGWKKNGWKNSQKKPVKNKELIQAIDREISQ 171 Query: 114 H--QIKWEWVKGHAGHPENERCDELA-------RAAAMNPTLEDTGYQ 152 + + WVKGHAG+ NE DELA R+ A + L G+Q Sbjct: 172 RPGPVDFRWVKGHAGNEGNELVDELARTYAGDCRSGARDGYLPIEGWQ 219 >UniRef50_A4Y094 Ribonuclease H n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y094_PSEMY Length = 162 Score = 164 bits (415), Expect = 9e-40, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 7/152 (4%) Query: 6 EIFTDGSCLGNPG---PGGYGAILRY-RGREKTFSAGYT---RTTNNRMELMAAIVALEA 58 I+TDG+C N G+GA L G+ +A + TNNR EL+AA+ AL Sbjct: 5 TIYTDGACTNNGQANARAGWGAYLVNPEGKTLKLAAPVPLEQKQTNNRAELLAAVEALRR 64 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + + L +DSQ + +G +W+ WK + WK +DKKPV + DLW+++D L + + Sbjct: 65 CTKPGPITLYSDSQLLVKGANEWLPGWKAKDWKKSDKKPVDHRDLWEQIDQFLQERDVTL 124 Query: 119 EWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 WV+GHAGHP NE D LA A +++ G Sbjct: 125 IWVEGHAGHPGNEVADALADLGASGKRIQELG 156 >UniRef50_C4V6H3 Ribonuclease H n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V6H3_9FIRM Length = 217 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 75/144 (52%), Positives = 91/144 (63%), Gaps = 4/144 (2%) Query: 4 QVEIFTDGSCLGNPGP-GGYGAILRYR--GREKTFSAGYTRTTNNRMELMAAIVALEALK 60 I TDGSCL NPG GG+ A++ G + S G TTNNRMEL AA++AL A+ Sbjct: 73 DYIIHTDGSCLRNPGGAGGWAAVIETAATGAVEERSGGAPETTNNRMELTAALMALSAVP 132 Query: 61 EHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E V L TDSQY++ T+ W+ WKKRGWK AD +PV N DLW +LD A +++ Sbjct: 133 EGARVALYTDSQYLKNAFTKFWLPAWKKRGWKKADGEPVLNQDLWVQLDVAFAARHVQFH 192 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 WVKGHAG P NERCD LARA A Sbjct: 193 WVKGHAGDPRNERCDALARAEAER 216 >UniRef50_Q92S39 Probable ribonuclease HI protein n=1 Tax=Sinorhizobium meliloti RepID=Q92S39_RHIME Length = 169 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 8/150 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILR------YRGREKTFSAGYTRTTNNRMELMAAIVAL 56 ++ + TDG+C NPGPGG+GA+L+ + + TTNNRMEL A + L Sbjct: 13 RRYIVHTDGACRNNPGPGGWGAVLQLEEEGEIIKEKDLSGTTISETTNNRMELSAVLGGL 72 Query: 57 EALKEHC-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QH 114 LK+ + + +DS+YV G++ W+ WK+ GW+ ADK V N+DLWQ LD Sbjct: 73 RRLKDKTIPITVRSDSKYVVNGMSTWLEGWKRNGWRKADKTTVLNMDLWQELDQLQETLG 132 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMNP 144 I W WVKGH+G P N+RCD LA A N Sbjct: 133 PISWVWVKGHSGDPMNDRCDRLANVAIDNA 162 >UniRef50_C3Y169 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y169_BRAFL Length = 203 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 5/143 (3%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKEH 62 ++TDG C N G I Y G + R TNNR E+ AA A+E+ KE Sbjct: 51 VVYTDGCCTDNGFHGASAGIGVYWGPGHERNMSAKLPGRQTNNRAEIHAARYAIESAKEM 110 Query: 63 C--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ L TDSQ++ GIT+WIH WKK GWK + KPV+N + +Q LD+AL ++W Sbjct: 111 GLAKISLHTDSQFLINGITKWIHGWKKNGWKLSTGKPVQNKEDFQSLDSALQGIDVQWVH 170 Query: 121 VKGHAGHPENERCDELARAAAMN 143 V+GH G P NE D LA+ + Sbjct: 171 VRGHVGVPGNEAADGLAKEGSRK 193 >UniRef50_O60930 Ribonuclease H1 n=26 Tax=Bilateria RepID=RNH1_HUMAN Length = 286 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 69/150 (46%), Gaps = 5/150 (3%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALE 57 M V ++TDG C N I Y G + G R TN R E+ AA A+E Sbjct: 136 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIE 195 Query: 58 ALK--EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 K +++L TDS + GIT W+ WKK GWKT+ K V N + + L+ Sbjct: 196 QAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMD 255 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPT 145 I+W V GH+G NE D LAR A Sbjct: 256 IQWMHVPGHSGFIGNEEADRLAREGAKQSE 285 >UniRef50_A8HXQ9 Ribonuclease H n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8HXQ9_AZOC5 Length = 186 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 2/136 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 ++ DGS L NPGP G+ ++ G +TF+ TNN+MEL AAI AL L Sbjct: 23 DAFVVYADGSSLQNPGPAGWAVLVIPPHGGPQTFAGSEPWATNNQMELRAAIEALNVLPM 82 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEW 120 ++ DS+YV +G++ W W++RGW+ + +PV N DLW+ L +++ W Sbjct: 83 DAAGVIRCDSEYVVKGVSDWRSGWERRGWRNSKGQPVANADLWRTLYRLSDDRPGVRFAW 142 Query: 121 VKGHAGHPENERCDEL 136 V+GHAG P NE D L Sbjct: 143 VRGHAGDPGNELADML 158 >UniRef50_UPI000180BF60 PREDICTED: similar to predicted protein n=1 Tax=Ciona intestinalis RepID=UPI000180BF60 Length = 282 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE- 61 ++TDG+C N G + G + + TN R E+ A A++ + Sbjct: 133 VVYTDGACSKNGRKGSRAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDV 192 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 H ++++ TDS++V IT+W+ W ++GW AD KPV + +Q + + + +K+E Sbjct: 193 GHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKVEFQEMLKNMKKINVKFEH 252 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTG 150 V GH G+ NE D+LA A P L + G Sbjct: 253 VFGHRGNYGNEMADKLAVQGATMPYLLNIG 282 >UniRef50_D2Q8L6 Rnh Ribonuclease H n=2 Tax=Bifidobacterium dentium RepID=D2Q8L6_9BIFI Length = 400 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 81/150 (54%), Gaps = 12/150 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP GP G+G + + G T TN EL A + Sbjct: 3 ITVSTDGSALGNPNGPMGWGWADHDLNAGGTPGHDHAGDCDAGGATNGTNQIGELCAVLE 62 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A +++ TDSQY T+W+H WKK GWK + KKPVKN L + +DA + Q Sbjct: 63 ALRAHPGSEPLVIETDSQYAINCSTKWVHGWKKNGWKNSQKKPVKNAALIKAIDAEISQR 122 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAAM 142 +K+ WVKGHAG+ NE+ DELAR A Sbjct: 123 PGPVKFVWVKGHAGNAGNEKVDELARTYAD 152 >UniRef50_D1NV93 Ribonuclease H n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NV93_9BIFI Length = 409 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 79/151 (52%), Gaps = 10/151 (6%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGRE-------KTFSAGYTRTTNNRMELMAAIVAL 56 + + TDGS LGNP GP G+ G E + G T TN EL A + AL Sbjct: 34 ITVSTDGSALGNPNGPMGWAWADHTDGDEASHHHGGDCDAGGATNGTNQIGELCAVLQAL 93 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 A +I+ TDSQY T+W+H WKK GWK + K+PVKN L + +DA L Sbjct: 94 RAHPGSEPLIIETDSQYAINCSTKWVHGWKKNGWKNSKKEPVKNAPLIKAIDAELRDRAG 153 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMNPT 145 + + WVKGHAG+ NE+ D LAR A + Sbjct: 154 SVTFVWVKGHAGNEGNEKVDLLARTYAEDAR 184 >UniRef50_C0VYC6 Prolyl aminopeptidase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VYC6_9ACTO Length = 662 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 55/138 (39%), Positives = 78/138 (56%), Gaps = 4/138 (2%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 + DGS L NPGP G+ + + G+ TNN EL A + L++ Sbjct: 3 IIAAADGSALKNPGPTGWAWAI---DESTWRAGGFKHGTNNIGELYAVLDLLKSTAHLDE 59 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DS+YV +T+WIH WK++ WK AD PV NV+L Q +DA + ++ +EWV+G Sbjct: 60 PLHILADSRYVIDSMTKWIHGWKRKDWKKADGSPVLNVELIQEIDALMQGRKVTFEWVRG 119 Query: 124 HAGHPENERCDELARAAA 141 H+GH NE DE ARAAA Sbjct: 120 HSGHDMNEFVDEKARAAA 137 >UniRef50_B2AD65 Predicted CDS Pa_4_220 n=1 Tax=Podospora anserina RepID=B2AD65_PODAN Length = 311 Score = 162 bits (410), Expect = 4e-39, Method: Composition-based stats. Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALKEH 62 ++TDG+ GN G G + + G + + TN R EL A + AL+ + Sbjct: 156 VYTDGAAPGNGKAGACGGVGVWFGADDPRNVSERLAGPLQTNQRAELTAILRALQLVDLD 215 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK----- 117 + + TDSQY +T+W +W K+GWKTA PVKN DL + + + + K Sbjct: 216 SPIEIRTDSQYSIDCVTKWYVSWVKKGWKTAGGTPVKNADLVKSIRDLMEDREAKGTITI 275 Query: 118 WEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 V GH+G N++ D LA A P L++ G Sbjct: 276 LTKVVGHSGDYGNDQADRLAVLGAQLPALDEKGL 309 >UniRef50_B6JI04 Ribonuclease HI (RNase HI) n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JI04_OLICO Length = 255 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 70/139 (50%), Positives = 87/139 (62%), Gaps = 1/139 (0%) Query: 3 KQVEIFTDGSC-LGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 K ++TDGS G G GG+ AI+R G +T NRME++AA+VALE L Sbjct: 109 KTAIVYTDGSAERGGKGRGGWAAIIRAGFDIVEIFGGAEASTINRMEIIAAVVALEILPA 168 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C V L TDS+Y+R GIT WI WK+ GW T ++PVKN DLW+RLDAA H + W+WV Sbjct: 169 GCVVKLHTDSKYLRNGITNWIDGWKRNGWLTVAREPVKNEDLWRRLDAARLSHTVTWKWV 228 Query: 122 KGHAGHPENERCDELARAA 140 K H G NER DELA+ A Sbjct: 229 KAHVGIRLNERADELAKFA 247 >UniRef50_Q2GDA1 Ribonuclease H n=2 Tax=Neorickettsia RepID=RNH_NEOSM Length = 151 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 89/146 (60%), Gaps = 2/146 (1%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVALEAL- 59 +++ I+TDG+CLGNPGPGG+ A++ RG EK S +TNN+MEL+A I ALE+ Sbjct: 1 MEEYVIYTDGACLGNPGPGGWAAVIIQRGTNEKIISGREADSTNNKMELLAVIKALESFE 60 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 ++ V + TDS YV +GIT WI +W K W+ + VKN ++W RL H ++W Sbjct: 61 QKGKRVTVYTDSTYVYKGITAWIESWMKNKWRNSSGGAVKNKEMWVRLHGIAAAHTVRWL 120 Query: 120 WVKGHAGHPENERCDELARAAAMNPT 145 WVK H G NE D +AR A + T Sbjct: 121 WVKAHNGDHYNEIVDRVARKEAASFT 146 >UniRef50_A6FRK2 Ribonuclease H n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FRK2_9RHOB Length = 186 Score = 161 bits (407), Expect = 8e-39, Method: Composition-based stats. Identities = 69/139 (49%), Positives = 87/139 (62%), Gaps = 5/139 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGRE-----KTFSAGYTRTTNNRMELMAAIVALEA 58 V I+TDG+C GNPGPGG+GAIL + + TT NRME+MAAI ALE Sbjct: 29 DVVIYTDGACAGNPGPGGWGAILIDQRHGGASKHSEIAGYDIDTTGNRMEMMAAIQALEV 88 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 L V++ +D+QYV + IT+WI WK GWK VKN+DLWQRLD A QH ++W Sbjct: 89 LGRGVNVLIWSDNQYVIRSITRWIKKWKANGWKVKGGAMVKNIDLWQRLDEAQAQHNVRW 148 Query: 119 EWVKGHAGHPENERCDELA 137 WVK H+G+ NE D+LA Sbjct: 149 RWVKSHSGNVGNEMADKLA 167 >UniRef50_C9SF93 Ribonuclease H n=2 Tax=Sordariomycetes RepID=C9SF93_VERA1 Length = 328 Score = 161 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 9/150 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALK 60 + I+TDGS L N G + + G + + TN R EL A I ALE Sbjct: 178 LAIYTDGSSLANGKVGAAAGVGVFFGVDDARNLSERLEGEPQTNQRAELTAIIRALEIAP 237 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK--- 117 + +V + TDSQY +T W W+K+ W + +PVKN DL + + + + + Sbjct: 238 DEQDVQIFTDSQYSINCVTSWYKGWQKKDWHNSKGEPVKNRDLVEEVRELIETREAEGAS 297 Query: 118 --WEWVKGHAGHPENERCDELARAAAMNPT 145 + WVKGHA + N D LA A A P Sbjct: 298 TVFTWVKGHADNVGNTAADHLAVAGARMPP 327 >UniRef50_UPI000186D39C asparagine-rich protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186D39C Length = 710 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEA 58 + V+++TDG+CL N I + G + TNN E+ AA VA+E Sbjct: 549 NEYVQVYTDGTCLNNGKKEARAGIGIWFGDSHPLNVSEPLVGSPTNNCAEIQAARVAMEL 608 Query: 59 LKEHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 + ++ + TDS ++ T+WI WKK GW D VKN + ++LD + ++ Sbjct: 609 AIKAGIKKLKIFTDSSFLINCATKWIRRWKKNGWTLVDGGKVKNREELEKLDLVAQKLKV 668 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 KWE V+GH+G NE D LA A A+ G + + Sbjct: 669 KWEKVEGHSGIKGNEMADRLANAGALKFKKSIVGKKKQ 706 >UniRef50_C1D179 Putative ribonuclease H n=1 Tax=Deinococcus deserti VCD115 RepID=C1D179_DEIDV Length = 183 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 1/138 (0%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++VE+++DG+C G GG+ IL+YRG+E S TTNNRMEL + L+ LK Sbjct: 38 EEVELYSDGACDTTQGHGGWATILKYRGQELVLSGNEEATTNNRMELRGLLEGLKVLKRP 97 Query: 63 CEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V + TDSQY+R+ T WI W++ GWKTA PVKN +LW+ L A H + + WV Sbjct: 98 CQVRVVTDSQYLRKAFTDGWILKWQRNGWKTAGGDPVKNRELWEELIAQARTHALTFIWV 157 Query: 122 KGHAGHPENERCDELARA 139 KGHAGH ENER D LA Sbjct: 158 KGHAGHGENERVDVLAVQ 175 >UniRef50_UPI0001757D40 PREDICTED: similar to GA21286-PA n=1 Tax=Tribolium castaneum RepID=UPI0001757D40 Length = 231 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 6/144 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVALEALKE 61 V ++TDG+C N G I + G + + TNN E+ A I A++ ++ Sbjct: 84 VTVYTDGACENNGREGAKAGIGVWFGDNHPLNVSKPVKGKATNNAAEIQACICAVQIARD 143 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKK-PVKNVDLWQRLDAALGQHQIKW 118 + ++ + TDSQ+ +T+WI +WKK WK + K PVKN +Q LD ++W Sbjct: 144 NGIKKLQIITDSQFTINAMTKWIKSWKKNNWKLSSSKNPVKNKTDFQELDKLCEGLDVQW 203 Query: 119 EWVKGHAGHPENERCDELARAAAM 142 + V GH+G NE D LAR A Sbjct: 204 QHVAGHSGIKGNECADMLAREGAK 227 >UniRef50_Q9RVX2 Ribonuclease H n=1 Tax=Deinococcus radiodurans RepID=Q9RVX2_DEIRA Length = 179 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 69/134 (51%), Positives = 86/134 (64%), Gaps = 1/134 (0%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VE+++DG+C G GG+ ILRY RE S TTNNRMEL + L L+ C+ Sbjct: 37 VELYSDGACDTTKGHGGWATILRYGERELVLSGNEENTTNNRMELRGLLEGLRTLRRPCQ 96 Query: 65 VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 V + TDSQY+R+ T WI NW++ GWKTA K+PVKN DLW+ L H + + WVKG Sbjct: 97 VKVITDSQYLRKAFTDGWILNWQRNGWKTASKEPVKNQDLWEELIELAKVHALTFLWVKG 156 Query: 124 HAGHPENERCDELA 137 HAGH ENER DELA Sbjct: 157 HAGHGENERVDELA 170 >UniRef50_A6GW41 Ribonuclease HI n=13 Tax=Bacteria RepID=A6GW41_FLAPJ Length = 159 Score = 159 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 101/159 (63%), Gaps = 10/159 (6%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVALEA 58 M QV I+TDG+ GNPGPGGYG ++ G +K F G+ TTNNRMEL+A IV LE Sbjct: 1 MNYQVHIYTDGAAKGNPGPGGYGVVMELVGTAFKKEFYEGFRHTTNNRMELLAVIVGLEK 60 Query: 59 LKEHC-EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 LK +V++ +DS+YV + + W+ W+K+G+K KN DLW+RL +HQ+ Sbjct: 61 LKNPNMKVLVVSDSKYVVDSVEKKWVLGWEKKGFKDR-----KNSDLWKRLLIIYRKHQV 115 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLE-DTGYQVE 154 ++W+KGH HP+NERCD+LA A+ TL D Y+ E Sbjct: 116 DFKWIKGHNSHPQNERCDQLAVFASNQKTLSVDAFYEKE 154 >UniRef50_A7IEA7 Ribonuclease H n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IEA7_XANP2 Length = 245 Score = 159 bits (403), Expect = 2e-38, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 90/145 (62%), Gaps = 2/145 (1%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + TDGSCLGNPGPGG+ ++ G +T + TTNNRMEL AA++AL AL Sbjct: 2 IAAHTDGSCLGNPGPGGWAGVILDADGTARTLTGFAPDTTNNRMELTAALMALGALPADV 61 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI-KWEWVK 122 +L DS+YV +G+ W+ + ++RGWKTA KPV N DLW++L AA + + + WV+ Sbjct: 62 PSVLFCDSEYVVKGLNTWLASRERRGWKTAQDKPVANADLWRQLSAAKVERPLAEIRWVR 121 Query: 123 GHAGHPENERCDELARAAAMNPTLE 147 GHAG+ NE D LARA A L Sbjct: 122 GHAGNTMNETVDRLARAEAEKAKLS 146 >UniRef50_B2AS39 Predicted CDS Pa_1_22230 n=2 Tax=Sordariomycetes RepID=B2AS39_PODAN Length = 334 Score = 159 bits (403), Expect = 2e-38, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 9/155 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRG----REKTFSAGYTRTTNNRMELMAAIVALE 57 + + ++TDG+ GN I Y G R + TN R ELMA ++AL+ Sbjct: 172 NELIVVYTDGAAPGNGKRHAAAGIGVYFGAGDPRNISKRLPGPLQTNQRAELMAILLALQ 231 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--- 114 A V + TDSQY +T+W W + GW +A VKN D+ + + A + + Sbjct: 232 AFDPAESVEIRTDSQYSIDCVTKWYRGWVRNGWLSAKGAAVKNDDIIKPIRALIDERDAV 291 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + K+ V GH+G P N+ D LA A P +E Sbjct: 292 GARTKFTKVAGHSGDPGNDAADRLAVLGAQLPVVE 326 >UniRef50_A8QFV5 RNase H family protein n=1 Tax=Brugia malayi RepID=A8QFV5_BRUMA Length = 212 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEAL-- 59 ++TDG+C N G I Y G + + TNNR EL A I A++ Sbjct: 63 IVYTDGACSFNGHVGATAGIGVYWGEQHVDNISEPLLRGPPTNNRAELEAVIRAVQMAIQ 122 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + + ++I+ TDS + Q + WIH W+K GWKT++ VKN DL L+ L +++E Sbjct: 123 RRYHQLIVRTDSNLLIQTMNSWIHGWQKNGWKTSNGTTVKNQDLIIELNGLLKNINVRFE 182 Query: 120 WVKGHAGHPENERCDELARAAA 141 V GH G NE+ D+LAR A Sbjct: 183 HVAGHVGIYGNEKADQLAREGA 204 >UniRef50_A1A0B0 Ribonuclease H n=8 Tax=Bifidobacterium RepID=A1A0B0_BIFAA Length = 445 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 80/149 (53%), Gaps = 12/149 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYGAI------LRYRGREKT---FSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP GP G+ G E + G T TN EL A + Sbjct: 3 ITVSTDGSALGNPNGPMGWAWADHEPAAGGKPGHEHAGDCDAGGATNGTNQIGELCAVLE 62 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A ++++ TDSQY T+W+ WK+ GWK + KKPVKN DL + +D + Sbjct: 63 ALRAHPGSEDLVIETDSQYAINCSTKWVQGWKRNGWKNSQKKPVKNADLIRAIDNEIAHR 122 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAA 141 +++ WVKGHAG+ NE+ DELAR A Sbjct: 123 AGSVRFVWVKGHAGNAGNEKVDELARTYA 151 >UniRef50_A4JFN6 Ribonuclease H n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JFN6_BURVG Length = 177 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 70/155 (45%), Positives = 90/155 (58%), Gaps = 9/155 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE----ALK 60 VE +TDG+C GNPGPGG+GAI + GRE F G TTNN MEL + LE L Sbjct: 13 VEAWTDGACSGNPGPGGWGAITQVGGREARFFGGMNPTTNNVMELFGVLFVLESTLGRLP 72 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-----GQHQ 115 + + TDSQYV++G+T+W+ WK++GW+ AD K V N + WQR DAAL + Sbjct: 73 PGSTLSVRTDSQYVQKGVTEWLAGWKRKGWRKADGKLVLNAEWWQRTDAALIAHRAAGNT 132 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTG 150 + WV+GHAG NER D LAR + G Sbjct: 133 VNVLWVRGHAGDELNERADALARRGSNQSACLPKG 167 >UniRef50_Q6MIM3 Ribonuclease H n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIM3_BDEBA Length = 263 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 90/148 (60%), Gaps = 6/148 (4%) Query: 2 LKQVEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 + I++DG+C GNPGPGG+G IL + + G TTNNRME+ AA+ AL+A+ Sbjct: 18 RDHIMIYSDGACSGNPGPGGWGSVILYPDNQVQELGDGEKSTTNNRMEMTAALEALKAVA 77 Query: 61 EHC-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH----Q 115 V TDS Y+ +GITQW+H W++RGWKTA+ V N D+W+ L + + Sbjct: 78 HMKVPVRFYTDSTYLIRGITQWVHGWRRRGWKTAEGGEVSNQDIWEDLSHVVAARGTQGK 137 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMN 143 I+W + +GH G P NERCD +A A + N Sbjct: 138 IEWHYSRGHVGIPGNERCDRIAVAFSKN 165 >UniRef50_Q7V474 Possible ribonuclease HI n=12 Tax=Bacteria RepID=Q7V474_PROMM Length = 257 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 68/137 (49%), Positives = 93/137 (67%), Gaps = 5/137 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61 V TDG+C GNPGPGG+GA+LR+ G + F TTNNRMEL AA+ LE LKE Sbjct: 9 VAAATDGACSGNPGPGGWGALLRFEDGSVEEFGGYAPATTNNRMELQAALHVLEQLKELP 68 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 H ++ + TDS+Y+ G+++W+ WK++GW+TA KPV N DLW+ LD A H + + Sbjct: 69 CHPDLKIRTDSKYLIDGLSKWMAGWKRKGWRTAAGKPVLNQDLWRALDRARLDH-VPLAY 127 Query: 121 VKGHAGHPENERCDELA 137 VKGH+G P+NER D++A Sbjct: 128 VKGHSGDPDNERVDQIA 144 >UniRef50_A9WMA2 Ribonuclease HI n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WMA2_RENSM Length = 290 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 80/139 (57%), Gaps = 5/139 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--H 62 + DGS L NPGP G+ + + + G+ TNN+ ELMA + A Sbjct: 3 ITAAADGSALNNPGPAGWAWYI---DEQTWRAGGWPHGTNNQGELMAVLDLFRATAHLPA 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + + DSQYV +T+W+ WK++GW+ AD KPV NV++ + +DAAL + ++EWVK Sbjct: 60 EPLHILCDSQYVINCVTKWMPGWKRKGWRKADGKPVLNVEMLKEIDAALVRRTYQFEWVK 119 Query: 123 GHAGHPENERCDELARAAA 141 GHAGH NE D ARAA+ Sbjct: 120 GHAGHDLNEAADSKARAAS 138 >UniRef50_A6RRU3 Putative uncharacterized protein n=1 Tax=Botryotinia fuckeliana B05.10 RepID=A6RRU3_BOTFB Length = 325 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 68/150 (45%), Gaps = 9/150 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 ++++TDGS GN G + G + TN R EL AA+ ALE + Sbjct: 175 IKVWTDGSSRGNGKVGAVAGYGVFFGDGDERNISAPLEGSPQTNQRAELTAALRALETVP 234 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----Q 115 + + TDS Y T W NW K GWKT+ KPV N DL +++ A + + Q Sbjct: 235 LDKNIEIITDSNYTINCATVWYKNWGKNGWKTSTGKPVMNEDLVKQIRALIDKRTKNKAQ 294 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPT 145 WVKGH +P N D LA AM Sbjct: 295 TNLTWVKGHDENPGNVAADRLAVKGAMEKN 324 >UniRef50_B0CND0 Predicted protein n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0CND0_LACBS Length = 561 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 9/155 (5%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALKE- 61 +++DG+C GN G + + G + TNNR EL+A LE+ Sbjct: 94 VVYSDGACKGNGKVGSVAGVGVWWGHNDPRNIAERCPGDQTNNRAELIAIARVLESTPRS 153 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----QI 116 +++ TDSQY WI NW + GW + K+PVKN + + + A L ++ Sbjct: 154 KKPLLIKTDSQYSINCFQNWISNWSRNGWVNSSKEPVKNAGIIRYISALLDLRAKSGQKV 213 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 + ++VKGH+G N+ D A P + + Sbjct: 214 RLQYVKGHSGDTGNDGADAQANQGTTQPPRGELDW 248 >UniRef50_A8N3A5 Predicted protein n=2 Tax=Eukaryota RepID=A8N3A5_COPC7 Length = 502 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALK- 60 + ++TDG+ GN PG I + G + + TNNR EL+A + LE Sbjct: 97 LVVYTDGASKGNGQPGSVAGIGVWWGHDDPRNIAERCPGDQTNNRAELLAILRVLETAPI 156 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----Q 115 +++ +DSQY + W+ W KRGWK A +PVKN + + + A L + + Sbjct: 157 SKTPLLIKSDSQYSMNCLQVWLPGWVKRGWKNAKGEPVKNAPIIRLISAHLDRRAQLGQK 216 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVE 154 ++ +V+GH+G+ N+ D A A + P E+ + E Sbjct: 217 VRMVYVEGHSGNVGNDGADAQANAGCLLPPTEERDWDAE 255 >UniRef50_C0QZB8 Ribonuclease H n=2 Tax=Brachyspira RepID=C0QZB8_BRAHW Length = 163 Score = 157 bits (398), Expect = 9e-38, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 2/138 (1%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREK--TFSAGYTRTTNNRMELMAAIVALEALK 60 + I+TDG C GNPG G + AIL TTNNRME+ AAI ALE LK Sbjct: 4 DNIIIYTDGGCRGNPGLGAWAAILISEKHNLRLEIGESEDNTTNNRMEMKAAIKALERLK 63 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + L +DS Y+ G+T+WI++W+K W +DKKPV+N + W RL +H I++ Sbjct: 64 HSHSIKLHSDSAYLVNGMTKWIYSWQKNNWVKSDKKPVENKEYWLRLIELSKKHDIEFIK 123 Query: 121 VKGHAGHPENERCDELAR 138 VKGH+ + EN R DE+ Sbjct: 124 VKGHSTNKENNRADEIVN 141 >UniRef50_C7NFY8 RNase HI n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NFY8_KYTSD Length = 291 Score = 157 bits (398), Expect = 9e-38, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 7/150 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 + DGS LGNPGP G+ + + + G+ TNN ELMA + L+ Sbjct: 2 ITAAADGSALGNPGPAGWAWYV---DDDCWAAGGWPHGTNNMGELMAVLDLLQQTAHLDD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 ++ + DSQY I++W WK++GWK AD KPV N+DL + LD A+ ++ +EWVKG Sbjct: 59 DLHVLCDSQYAINVISKWTPAWKRKGWKKADGKPVMNIDLVKALDEAMQGRRVTFEWVKG 118 Query: 124 HAGHPENERCDELARAAA---MNPTLEDTG 150 HAGH NE DE AR AA D G Sbjct: 119 HAGHALNEAADERARNAALAHQRGAEPDPG 148 >UniRef50_Q86MG7 Rnase h protein 1.0, isoform c, partially confirmed by transcript evidence n=4 Tax=Caenorhabditis RepID=Q86MG7_CAEEL Length = 251 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 6 EIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--K 60 ++TDG+C N G+G + F Y TNNR EL+A A+E K Sbjct: 104 VVYTDGACSSNGTKNAKAGWGVYWGDDSEDNEFGPVYGAPTNNRGELIAVQKAIEKAIEK 163 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 +V++ TDS + Q + WIH WK++GWKT+ V N D+ ++D + ++K+ Sbjct: 164 RLPKVVIKTDSNLLVQSMNIWIHGWKRKGWKTSTGSEVLNQDVLMKIDNLRQKLKVKFLH 223 Query: 121 VKGHAGHPENERCDELARAAAMN 143 V+GHAG NE+ DELAR A Sbjct: 224 VRGHAGIDGNEKADELARKGAQM 246 >UniRef50_C2FU18 Ribonuclease H n=2 Tax=Sphingobacterium spiritivorum RepID=C2FU18_9SPHI Length = 169 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 82/169 (48%), Positives = 108/169 (63%), Gaps = 20/169 (11%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILR--YRGR---------EKTFSAGYTRTTNNRMEL 49 ML +E++TDG+ GNPGPGGYG ILR Y G EKTFS G+ RTTNNRMEL Sbjct: 1 MLPMIELYTDGASSGNPGPGGYGTILRTRYSGENEAFKGKLIEKTFSEGFRRTTNNRMEL 60 Query: 50 MAAIVALEALKEHCE-VILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 MA I+ LEALK + V + +DS+YV I +W++ W ++G++ KN DLW RL Sbjct: 61 MAVIIGLEALKSPQQQVTIYSDSKYVIDAIDKKWVYGWIQKGFQGK-----KNKDLWIRL 115 Query: 108 DAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPT--LEDTGYQVE 154 + HQ++ WVKGHAGHP+NERCD+LA AA+ + DT ++ E Sbjct: 116 MKSYKLHQVRLVWVKGHAGHPDNERCDQLAVAASKDKANWKIDTVFEQE 164 >UniRef50_Q83HK9 Ribonuclease H n=3 Tax=Actinomycetales RepID=RNH_TROW8 Length = 161 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 4/143 (2%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 ++ TDGS L NPGP G+ + S G+ TNN EL A L A + Sbjct: 3 NNEIIAATDGSSLANPGPSGWAWYV---DENTWDSGGWDIATNNIAELTAVRELLIATRH 59 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 +++ +DS+YV +T+W+++WK R W+ AD KPV N ++ Q +D+ + I+ W Sbjct: 60 TDRPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSW 119 Query: 121 VKGHAGHPENERCDELARAAAMN 143 V H GHP NE D LAR AA N Sbjct: 120 VNAHTGHPLNEAADSLARQAANN 142 >UniRef50_A5GWJ8 Ribonuclease H n=3 Tax=Synechococcus RepID=A5GWJ8_SYNR3 Length = 247 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 65/139 (46%), Positives = 86/139 (61%), Gaps = 5/139 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALE---ALK 60 V DG+C GNPGPGG+GA+LR+ GR + +TTNNRMEL A + LE L Sbjct: 16 VAAACDGACRGNPGPGGWGALLRFSDGRVEELGGSEAQTTNNRMELSACLALLERLQQLP 75 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + TDS+Y+ G T+WI+ WK++GW+TA V N DLW+ LDAA + Sbjct: 76 RAQGLAIRTDSKYLIDGFTRWINGWKRKGWRTASGSAVLNRDLWEALDAA-RLPDVALAH 134 Query: 121 VKGHAGHPENERCDELARA 139 VKGH+G P+NERCD +A A Sbjct: 135 VKGHSGDPDNERCDAIAVA 153 >UniRef50_A8PYJ8 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PYJ8_MALGO Length = 304 Score = 156 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 9/152 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGR------EKTFSAGYTRTTNNRMELMAAIVAL 56 ++ ++TDGS GN G Y TNNR EL A ++A+ Sbjct: 153 DEIIVYTDGSSHGNGKRGSIAGYGVYWADPLYHRQNVAARLPGPVQTNNRAELTAILIAI 212 Query: 57 EALKEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 L + + + TDS+Y Q I +WI W+ WKT+ KK V+N DL++ + A+ + Sbjct: 213 RTLPDPSRPLHIYTDSRYAIQAINKWIVQWRANNWKTSTKKDVENRDLFEAIQDAINACR 272 Query: 116 IK--WEWVKGHAGHPENERCDELARAAAMNPT 145 + +V+GHAGH N D+LA A + T Sbjct: 273 YRPVLTYVRGHAGHYGNVMADKLANEGAASGT 304 >UniRef50_UPI0001925315 PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925315 Length = 255 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 66/144 (45%), Gaps = 6/144 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALKE 61 +++DG CL N G + Y G + + TN + EL+AA ALE E Sbjct: 110 VVYSDGCCLSNGSNFAVGGVGVYWGPYHPKNVSEYLDVEQPTNQKAELVAACRALETAIE 169 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 EV L TDS Y + +T+WI NW+ GWK + V N + RL + + W Sbjct: 170 MNLPEVELRTDSMYTIKAMTEWIQNWESNGWKNSSGGNVVNKEEMLRLSELCAKISVTWV 229 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 + GH G NE+ D+LA A Sbjct: 230 HIPGHKGVYGNEQADQLANQGAQK 253 >UniRef50_O44114 Ribonuclease H1 n=3 Tax=Drosophila melanogaster RepID=O44114_DROME Length = 333 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 7/144 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE 61 V ++TDGSC+GN G Y G+ +A R TNN E+ AAI A++ + Sbjct: 182 VIVYTDGSCIGNGRTGACAGYGVYFGKNHQLNAAKPVEGRVTNNVGEIQAAIHAIKTALD 241 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 ++ +STDSQ++ IT W+ WKKR WK + +PVKNV ++ LD L + I + Sbjct: 242 LGIQKLCISTDSQFLINSITLWVAGWKKRDWKLKNNQPVKNVVDFKELDKLLQDNNITVK 301 Query: 120 W--VKGHAGHPENERCDELARAAA 141 W V+ H G NE D+LAR + Sbjct: 302 WNYVEAHKGIEGNEMADKLARQGS 325 >UniRef50_Q7S4S2 Predicted protein n=2 Tax=Sordariales RepID=Q7S4S2_NEUCR Length = 327 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 60/152 (39%), Gaps = 9/152 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALE 57 K V I+TDGS GN G + Y + TN R EL A + ALE Sbjct: 175 SKPVIIYTDGSARGNGKVGAMAGVGVYFCGGFRENISERLQGPVQTNQRAELTAVLRALE 234 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--- 114 A+ + L TDSQY +T W W K W+ + V N DL + + Sbjct: 235 AIPDTQNCELRTDSQYTINCVTSWYKKWMKNEWRNTKGEEVSNQDLIVAIRKKIDTRDRK 294 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAAMNP 144 + K+ WVKGH N D LA A Sbjct: 295 AAETKFVWVKGHGTDEGNIAADMLAVKGATMM 326 >UniRef50_C0ZQX0 Ribonuclease HI n=2 Tax=Rhodococcus erythropolis RepID=C0ZQX0_RHOE4 Length = 183 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Query: 5 VEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G+ + + S G TN EL A A+ A Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSMSGGEASGTNQIAELRALFEAVVAHPGAD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ +WK++GWKTA VKN++L Q +D A+ +++ WV Sbjct: 59 PLLIESDSQYAIKCASEWLPSWKRKGWKTASGGAVKNLELVQSIDRAITDRVGPVRFRWV 118 Query: 122 KGHAGHPENERCDELARAAAM 142 +GH G+ NE D+LA AA Sbjct: 119 RGHVGNHYNEMADKLAGEAAR 139 >UniRef50_C1B0N1 Ribonuclease HI n=3 Tax=Nocardiaceae RepID=C1B0N1_RHOOB Length = 178 Score = 154 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Query: 5 VEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G+ + + S G TN EL A + A+ A Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWV---NHEGPSQSGGEPSGTNQIAELRALLEAITAHPGAD 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ WK++GWKTA PVKN+ L Q +D A+ + +++ WV Sbjct: 59 PLLIESDSQYAIKCASEWLPGWKRKGWKTAGGAPVKNLALVQSIDRAIAERPGPVRFRWV 118 Query: 122 KGHAGHPENERCDELARAAAM 142 +GH G+ NE D LA AA Sbjct: 119 RGHVGNHYNEMADVLAGEAAR 139 >UniRef50_Q0TWR7 Putative uncharacterized protein n=1 Tax=Phaeosphaeria nodorum RepID=Q0TWR7_PHANO Length = 319 Score = 154 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 9/147 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS----AGYTRTTNNRMELMAAIVALEALK 60 + I TDGS N P + Y G + G + TN R ELMA +ALE Sbjct: 20 LVINTDGSSFRNGKPDAIAGVGVYFGPNDKRNTGQPLGPGKQTNQRAELMAVKIALEKAP 79 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 V++S+DS+Y +T W+ WK+R WK + +N +L Q + + Q Sbjct: 80 IDQVVLISSDSRYAINCLTDWLPLWKQRSWKKVEGIFKENTELIQSIVKRMETRQKFNAL 139 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 + WVKGH+G P NE D+LA + Sbjct: 140 TYFWWVKGHSGDPGNEFADKLAVKGSK 166 >UniRef50_Q9X7R6 Ribonuclease HI n=8 Tax=Actinomycetales RepID=RNH_STRCO Length = 231 Score = 154 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGRE--KTFSAGYTRTTNNRMELMAAIVALEA 58 M ++ DG+ GNPGP G+ ++ + + + TNN EL A L + Sbjct: 1 MRERAVAACDGASKGNPGPAGWAWVVADASENPVRWEAGPLGKATNNIAELTALERLLAS 60 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + + DSQY + +T W+ WK+ GWKTA KPV N +L R+D L +++ Sbjct: 61 TDPDVPLEVRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANRELVVRIDELLDGRSVEF 120 Query: 119 EWVKGHA--GHPENERCDELARAAA 141 +V H G N+ D A AA Sbjct: 121 RYVPAHQVDGDRLNDFADRAASQAA 145 >UniRef50_C7MN72 RNase HI n=2 Tax=Bacteria RepID=C7MN72_CRYCD Length = 150 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 78/148 (52%), Gaps = 5/148 (3%) Query: 1 MLKQVEIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 M ++V+++ DG C GN G GG+G+ L + K G TTNN+MEL I L Sbjct: 1 MSQRVQLYCDGGCRGNQGKVNIGGWGSYLIWGSHTKELFGGERNTTNNKMELTGCIEGLR 60 Query: 58 ALKEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-Q 115 A+K V + DS YV GI+ WI+ W K+ W + K+PV N DLW L A + Sbjct: 61 AIKNKSVGVDVYLDSAYVYNGISTWIYGWMKKNWVNSKKEPVANKDLWLELLAEREKFND 120 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMN 143 I + VKGHA + N + DELA A Sbjct: 121 ITFNKVKGHADNVGNIKADELANRAMDE 148 >UniRef50_C2CX87 Possible ribonuclease H n=2 Tax=Bifidobacteriaceae RepID=C2CX87_GARVA Length = 350 Score = 154 bits (390), Expect = 8e-37, Method: Composition-based stats. Identities = 59/150 (39%), Positives = 81/150 (54%), Gaps = 12/150 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP G G+ ++ + G T TN EL A + Sbjct: 15 IVVSTDGSALGNPNGSMGWAWADHTDEAGSTNEHQHAGNADAGGATNGTNQIGELCAVLE 74 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A ++ + TDSQY T WIH WKK GWK + K+PVKN DL + +D+ + + Sbjct: 75 ALRAHPGSEDLTIETDSQYAINCSTTWIHGWKKNGWKNSKKEPVKNADLIRAIDSEITKR 134 Query: 115 Q--IKWEWVKGHAGHPENERCDELARAAAM 142 + +K+ WVKGHAG+ NE+ DELAR A Sbjct: 135 EGSVKFVWVKGHAGNAGNEKVDELARTYAE 164 >UniRef50_Q66LX4 Ribonuclease H n=4 Tax=Siphoviridae RepID=Q66LX4_BPT5 Length = 162 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 80/159 (50%), Gaps = 10/159 (6%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREK--TFSAGYTRTTNNRMELMAAIVALEA 58 ++ ++TDG+C NPGPG +G I+ ++ + S +TTNN MEL A + AL Sbjct: 4 IMSVFHVYTDGACKSNPGPGAWGFIVYDDNDDRLGSKSGYSPKTTNNEMELTAIVEALRW 63 Query: 59 L--KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--- 113 K++ +++ TDS Y + G+ W+ +W+++GWK AD + N++LWQ Q Sbjct: 64 SVKKDNRPIVIYTDSAYCKNGMESWMFSWQRKGWKKADGEVPLNLELWQEAFKLTQQYIN 123 Query: 114 ---HQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT 149 + VKGH+G NE D L + + Sbjct: 124 FHNTNPTFIKVKGHSGISGNEAVDALCNTVITEAEMAEM 162 >UniRef50_Q46HH3 Ribonuclease H n=5 Tax=Cyanobacteria RepID=RNH_PROMT Length = 161 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 9/159 (5%) Query: 1 MLKQ----VEIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVA 55 M K+ + TDG+C GNPGPGG+GA++R+ G E F TTNNRMEL AA+ Sbjct: 1 MSKEEKLAIAAATDGACSGNPGPGGWGALIRFQDGSEIEFGGNSPETTNNRMELQAALFI 60 Query: 56 LEALKE---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 LE LK + + TDS+Y+ G+ +W+ NWKK+GWKTA KPV N DLW+ LD Sbjct: 61 LEKLKNIKFAPSLTIKTDSKYLIDGMDKWMPNWKKKGWKTASGKPVLNQDLWKALDHP-E 119 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 +IK ++VKGH+G +N+R D +A A + ++ + Sbjct: 120 LPKIKLQYVKGHSGEKDNDRVDAIAVAFSKGRKIQLKDF 158 >UniRef50_D1YER5 Ribonuclease HI n=4 Tax=Actinomycetales RepID=D1YER5_PROAC Length = 300 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 4/128 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HC 63 + DGS L NPGP G+ + + + G+ R TNN EL A + L A ++ + Sbjct: 2 IVAAADGSSLDNPGPAGWAWYI---DDDTWAAGGWPRGTNNMGELKAVLDVLRATRDANE 58 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DSQY T+WI WK+ GW+ D KPV N DL + +D L + +EWVKG Sbjct: 59 PLTILCDSQYAINCCTKWIPGWKRHGWRKRDGKPVLNRDLLEPIDEELDGRDVTFEWVKG 118 Query: 124 HAGHPENE 131 HAGH NE Sbjct: 119 HAGHAMNE 126 >UniRef50_C1BPL6 Ribonuclease H1 n=1 Tax=Caligus rogercresseyi RepID=C1BPL6_9MAXI Length = 257 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 6/144 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 V++FTDG+C N G I Y G + TNN E+ A A++++K Sbjct: 114 VKVFTDGACSNNGRRGAVAGIGAYFGPGSPKNISEPVSGDHQTNNSAEIQAISQAIQSVK 173 Query: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 +V++ TDS++ + W+ WK+ GWK + V N + +LD +K+ Sbjct: 174 NEGRTKVVIYTDSKFAINSVELWLEGWKQNGWKKSSGGDVINKADFIQLDDIRKGMSVKF 233 Query: 119 EWVKGHAGHPENERCDELARAAAM 142 V+GH G NE D+LAR A Sbjct: 234 IHVRGHQGIHGNEMADQLAREGAQ 257 >UniRef50_D2R9R7 Ribonuclease HI n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9R7_GARVA Length = 361 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 12/150 (8%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILR---------YRGREKTFSAGYTRTTNNRMELMAAIV 54 + + TDGS LGNP G G+ + + G T TN EL A + Sbjct: 18 IVVSTDGSALGNPNGSMGWAWADHIDESGSSNEHHHTGNADAGGATNGTNQIGELCAVLE 77 Query: 55 ALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 AL A + + +DSQY T WIH WKK GWK + +PVKN +L + +DA + + Sbjct: 78 ALRAHPGREPLTIESDSQYAINCATTWIHGWKKNGWKNSKNEPVKNAELIRAIDAEITKR 137 Query: 115 Q--IKWEWVKGHAGHPENERCDELARAAAM 142 + +K+ WVKGHAG+ NE+ D LAR A Sbjct: 138 EGAVKFVWVKGHAGNEGNEKVDTLARGYAE 167 >UniRef50_C3MAD4 Putative ribonuclease HI n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAD4_RHISN Length = 278 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 5 VEIFTDGSCLGNPGPGGYGA-ILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-H 62 + +FTDG+C NPGPGG+G + R R + G TTNNRMEL A + +E K Sbjct: 107 LHVFTDGACEPNPGPGGWGVAVYRDRAEIASDHGGNADTTNNRMELTALLKGIEVAKALG 166 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKP------VKNVDLWQRLDAALGQH-Q 115 V++ +DS+Y G W H WKK+ WK A K VKNV+LWQ +DAAL + Q Sbjct: 167 APVVVWSDSRYCVDGCNDWRHGWKKKEWKKAGPKASAKNQEVKNVELWQAIDAALERADQ 226 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMN 143 I W KGHAG NER DEL+ + Sbjct: 227 ITIRWCKGHAGIVGNERADELSNLGVAS 254 >UniRef50_B8DW51 Ribonuclease H n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DW51_BIFA0 Length = 329 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 17/166 (10%) Query: 5 VEIFTDGSCLGNP-GPGGYGAILRYRGREKTFS-------AGYTRTTNNRMELMAAIVAL 56 + + TDGS L NP GP G+ G + G T TN EL A + AL Sbjct: 3 ITVSTDGSALRNPNGPMGWAWADHTDGARDEHAHAGDCAAGGATNGTNQIGELCAVLEAL 62 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 A +++ +DSQY ++W+ WKK GWK + ++PVKN + + +DA + + Sbjct: 63 RAHPGSEPLVIESDSQYAINCSSKWVFGWKKNGWKNSKQEPVKNAPIIKAIDAEISKRAG 122 Query: 115 QIKWEWVKGHAGHPENERCDELAR-------AAAMNPTLEDTGYQV 153 ++ + WVKGHAG+ NE+ D+LAR + A L G+Q Sbjct: 123 KVSFRWVKGHAGNAGNEKVDDLARGFAGDCESGAQEGYLPKEGWQA 168 >UniRef50_Q9UST8 Ribonuclease H n=1 Tax=Schizosaccharomyces pombe RepID=RNH1_SCHPO Length = 264 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 6/146 (4%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALE 57 + ++ DGS L N G + G + + TNNR EL A I+ALE Sbjct: 121 SDRQVVYADGSSLRNGKKGAVAGCGVFFGNDDPRNISVPLAGEEQTNNRAELQAIILALE 180 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + + +DS Y + +T W+ WKK +KT++ +PVKN+DL R + + Sbjct: 181 NTSGD--LTIRSDSNYSIKSLTTWLPKWKKNDFKTSNSQPVKNLDLINRASDLMSDRNVS 238 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 E+VKGH+ N++ D LAR A Sbjct: 239 LEYVKGHSTDYGNQQADMLARRGASE 264 >UniRef50_UPI0001C31642 Ribonuclease H n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31642 Length = 175 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 9/139 (6%) Query: 7 IFTDGSCLGNPGPGGYGAILR--YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 ++TDG+C GNPGPGG+ AI+ G +S G TTNNRME AA+ + +L Sbjct: 28 VWTDGACKGNPGPGGWAAIVVPADGGEPLEYSGGDPATTNNRMEYTAALEGMRSLPAGSR 87 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVKG 123 V + TDSQ + +T+WI WK++GWKTA PVKN DL LD+ +G+H+ ++W WV+G Sbjct: 88 VCIVTDSQLMLNSMTRWITGWKRKGWKTASGDPVKNQDLVMALDSEVGRHETVRWHWVRG 147 Query: 124 HAGHPE------NERCDEL 136 H N+R D L Sbjct: 148 HETGDGHAHKALNDRADRL 166 >UniRef50_A5FZ26 Ribonuclease H n=11 Tax=Bacteria RepID=RNH_ACICJ Length = 160 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 77/145 (53%), Positives = 93/145 (64%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 VEI+TDG C NPG GG+ A+LR+ E+ S TTNNRMEL AA ALEALK C Sbjct: 9 VEIWTDGGCKPNPGAGGWAAVLRFGAAEREMSGAERETTNNRMELTAAAAALEALKRPCR 68 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V L TDS+Y+R GIT+W W +R W+ A PV N +LWQR+ AA H+I+W WV+GH Sbjct: 69 VKLHTDSEYLRNGITRWHTGWVRRNWRNAQGDPVANYELWQRVLAAAKPHEIEWIWVRGH 128 Query: 125 AGHPENERCDELARAAAMNPTLEDT 149 AG P NER D+LA AA E Sbjct: 129 AGDPMNERVDQLATAAREAMLREPA 153 >UniRef50_A2SIU3 RNase HI n=2 Tax=Proteobacteria RepID=A2SIU3_METPP Length = 150 Score = 152 bits (384), Expect = 3e-36, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%) Query: 6 EIFTDGSCLG-NPGPGGYGAILRYRGREKT--FSAGYTRTTNNRMELMAAIVALEALKEH 62 +TDG+C NPGP +GA+L TN EL AAI L + Sbjct: 4 IAYTDGACAPSNPGPAAWGAVLIAPDGRTETDHFGFIGHGTNQIAELTAAIEGLTRVPAG 63 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 V L +DSQYV +G+++W W+++G++ + +PV N+ LW++L A ++ WV+ Sbjct: 64 ALVELVSDSQYVLKGLSEWRAGWERKGYRNSKGEPVANLGLWKQLFALADARKVSTRWVR 123 Query: 123 GHAGHPENERCDELARAA 140 GH G P NER D LA A Sbjct: 124 GHNGDPLNERADALANKA 141 >UniRef50_Q5KPB0 Ribonuclease H, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KPB0_CRYNE Length = 321 Score = 151 bits (383), Expect = 6e-36, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 12/156 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-------AGYTRTTNNRMELMAAIVALE 57 + ++TDGS GN G + G S TNNR EL+A I A+E Sbjct: 120 LVVYTDGSAKGNGQVGSRAGAGVWWGSRGEASKQNWAERVPGEPQTNNRGELLAVIRAIE 179 Query: 58 ALK-EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 + + DSQY +T W+ W ++ + K+ V N DL + L L + Sbjct: 180 RCPFPDIPLEIRCDSQYTISCMTIWLPKWMNNNFRNSYKQEVINTDLIKHLLVLLRRRGA 239 Query: 115 --QIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 ++K+++V H+G NE D LAR P + D Sbjct: 240 AGRVKFKYVPAHSGVEGNEAADRLARTGGALPFVSD 275 >UniRef50_Q8D3D3 Ribonuclease H n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=RNH_WIGBR Length = 157 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 107/153 (69%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M K+++IF DG+CLGNPGPGGYG I+ + K S GY TTNNRME+MAAI+ALE+L Sbjct: 1 MKKKIKIFIDGACLGNPGPGGYGVIICGKKLYKEISNGYYLTTNNRMEIMAAIIALESLH 60 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + +I++TDS+Y++ GIT+WI WK WKT + K VKN+DLW +L+ +H I W W Sbjct: 61 DMYNIIINTDSKYLKNGITKWIKVWKNNKWKTNNNKSVKNIDLWIKLEYLSKKHFINWNW 120 Query: 121 VKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 +KGH + +++RCD LA+ +A NP D YQ Sbjct: 121 IKGHTNNIKHDRCDFLAKISAKNPNAIDKIYQK 153 >UniRef50_Q58E11 MGC115038 protein n=2 Tax=Xenopus RepID=Q58E11_XENLA Length = 204 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 5/146 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEAL 59 + E++TDG C N G G I Y G + + R TN R E+ AA A + Sbjct: 59 RSAEVYTDGCCSRNGQYGANGGIGVYWGPNDSRNVSARLEGRQTNQRAEIEAAYTAAKQA 118 Query: 60 KEH--CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + + ++TDS++ G+T+W+ WK+ WKT D + V N +Q+LD A +K Sbjct: 119 RNDNVTHLEINTDSKFTIDGMTKWVPRWKENNWKTIDGRDVINKQDFQKLDKACENMDVK 178 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 W +V GH+G+ NE D+LA+A + Sbjct: 179 WNYVPGHSGNAGNEMADQLAKAGSSK 204 >UniRef50_Q6C0A0 YALI0F26543p n=1 Tax=Yarrowia lipolytica RepID=Q6C0A0_YARLI Length = 281 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 15/150 (10%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK-- 60 +TDG+C N G G I Y G + TN R EL A + ALE + Sbjct: 129 AYTDGACENNGGHRPKGGIGVYFGELHPCNYSGPLVGDVQTNQRAELSAILKALEIIDNR 188 Query: 61 -EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH----- 114 E+ + +DSQY +QW+ WKK G+KT K V+N DL +D L + Sbjct: 189 GENLNWQIRSDSQYAVNCCSQWLEGWKKNGFKTGKGKEVENQDLILAIDEYLQKPRTRIG 248 Query: 115 -QIKWEWVKGHAGHPENERCDELARAAAMN 143 +I ++ + GHAG ENE D LA+ Sbjct: 249 TRITFKHIPGHAG--ENEEVDALAKQGITE 276 >UniRef50_A8EUW9 Ribonuclease HI n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUW9_ARCB4 Length = 268 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 8/158 (5%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKT--FSAGYTRTTNNRMELMAAIVALEALK 60 + ++I+ DG+C GNPG G G ++ + + A TNN EL A AL Sbjct: 100 EHIKIYCDGACSGNPGNAGSGIVIYSNSKNPVLLYGAYVENGTNNIAELNALFQALTIAS 159 Query: 61 E---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 + + + TDS+Y IT W ++WKK GW + +KN++L Q + + Sbjct: 160 QTHSENVISIFTDSKYAIDCITTWAYSWKKNGWSKKGGE-IKNLELIQEAHYLYEKIKSK 218 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 I+ VKGH+G NE D +A A + Y Sbjct: 219 IEITHVKGHSGIEGNELADRMAVNAIKEKNEDFAFYSY 256 >UniRef50_B8HCV8 Ribonuclease H n=6 Tax=Actinobacteria (class) RepID=B8HCV8_ARTCA Length = 358 Score = 151 bits (381), Expect = 8e-36, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 5/128 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK--EH 62 + DGS LGNPGP G+ + E + G+ TNN+ ELMA + L A Sbjct: 3 ITAAADGSALGNPGPAGWAWYV---NDECWRAGGWPHGTNNQGELMAVLDLLRATAHVRQ 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 ++ + DSQYV IT+W+ WK++GW+ AD KPV NV+L + LD L + +EWVK Sbjct: 60 EDLHILCDSQYVINSITKWMPGWKRKGWRKADGKPVLNVELLKELDRELAGRKYTFEWVK 119 Query: 123 GHAGHPEN 130 GHAGH N Sbjct: 120 GHAGHDLN 127 >UniRef50_D1BU35 Ribonuclease H n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BU35_XYLCX Length = 191 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 79/134 (58%), Gaps = 5/134 (3%) Query: 5 VEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + + TDGSCL NPG G+ I GR S G TN EL A + A+EA Sbjct: 2 IIVSTDGSCLRNPGGAIGWAWIDHEGGRFD--SGGAASGTNQVAELTAVLRAVEAHPGDE 59 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QIKWEWV 121 +++ +DSQY + ++W+ WK++GW+TA PVKN++L Q +DAA+ +++ WV Sbjct: 60 PLLIESDSQYAIRCSSEWLEGWKRKGWRTASGSPVKNLELVQAIDAAIAGRGGPVRFRWV 119 Query: 122 KGHAGHPENERCDE 135 +GH G+P NER DE Sbjct: 120 RGHVGNPFNERADE 133 >UniRef50_C7M9U7 RNase HI n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7M9U7_BRAFD Length = 336 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--KEH 62 + DGS LGNPGP G+ + + G+ TNN EL A + LEA Sbjct: 3 ITAAADGSALGNPGPAGWAWYI---DDNSWRAGGWPHGTNNMGELKAVLDLLEATAVDAD 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 +++ DSQYV +T+W+ WK++GW+ D KPV NV+L + +D AL +++EWVK Sbjct: 60 QHLLILCDSQYVINSVTKWMPGWKRKGWRKKDGKPVLNVELLKDIDRALAGRSVEFEWVK 119 Query: 123 GHAGHPENE 131 GH+GH NE Sbjct: 120 GHSGHAMNE 128 >UniRef50_D2NR13 Ribonuclease HI n=2 Tax=Rothia mucilaginosa RepID=D2NR13_9MICC Length = 472 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL--K 60 +++ DGS LGNPGP G+ + + S G+ TNN EL A + EA + Sbjct: 5 QEIIAAADGSALGNPGPAGWAWYI---DDDHWASGGWAHGTNNMGELKAVLDLFEATASR 61 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 ++ + DSQYV +T+W+ WKK+GWK +D KPV N DL + LD L ++ W Sbjct: 62 PEAKLRVYCDSQYVINSLTKWMPGWKKKGWKKSDGKPVLNRDLLEALDQVLTGRDYEFIW 121 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGHAGH NE+ D LA AA Sbjct: 122 VKGHAGHELNEKADSLANGAAR 143 >UniRef50_A4QYI2 Putative uncharacterized protein n=1 Tax=Magnaporthe grisea RepID=A4QYI2_MAGGR Length = 341 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 9/150 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVALEALKE 61 E++TDGS +GN I + G + TN R EL A + AL++L Sbjct: 188 EVYTDGSSMGNGKKNSAAGIGVFFGLGDPRNLSEQLHNGPQTNQRAELTAILRALQSLGA 247 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----QI 116 + V + +DS+Y + W W+ W T+ K V N DL Q + + Q + Sbjct: 248 NEGVRIFSDSKYSISCVCDWYKKWQTSNWTTSAGKEVMNKDLIQPIRRLIEQREKRGVKT 307 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTL 146 ++ WVKGHA N + D LA A L Sbjct: 308 EFVWVKGHAATEGNVQADLLAVEGAKMARL 337 >UniRef50_A3W3Z9 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Roseovarius sp. 217 RepID=A3W3Z9_9RHOB Length = 161 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 1/141 (0%) Query: 6 EIFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +TDGSC NPGPGG L G+ S TTNN+ E+ A I AL A+ E Sbjct: 15 VAYTDGSCKDNPGPGGCAFRLYAPDGQIIEKSRQSLETTNNKAEMWAVIDALTAIPEDAP 74 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 V++ DS Y++ GI Q + W R W+ + + V+N +LW+++ A + ++ + +K H Sbjct: 75 VLVCLDSGYIKDGIEQHLEGWLSRDWRKTNGQEVRNRELWEKIIALMATREVTFHKIKAH 134 Query: 125 AGHPENERCDELARAAAMNPT 145 +G P+NE D +A AA Sbjct: 135 SGDPDNEHVDAMAGKAADKAA 155 >UniRef50_B3S3Z5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S3Z5_TRIAD Length = 173 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 5/142 (3%) Query: 6 EIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 ++ DG C N G G Y + TN R EL+AA ALE+ +H Sbjct: 29 IVYCDGCCFNNGFQNARAGIGIYWSYPNLSSVSERLSGKQTNQRAELVAACKALESASDH 88 Query: 63 --CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 + + TDS Y +T WI+ WK+ WKT+ VKN + +LD Q ++KW Sbjct: 89 NLETIEIRTDSMYTINVVTNWINKWKRNEWKTSSGDEVKNKEDIVKLDHLNSQLRVKWTH 148 Query: 121 VKGHAGHPENERCDELARAAAM 142 ++ HAG NE D+LA+A A Sbjct: 149 IRSHAGDVGNEMADKLAKAGAQ 170 >UniRef50_UPI000050F716 ribonuclease H n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050F716 Length = 223 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 78/128 (60%), Gaps = 4/128 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 + DGS LGNPGP G+ + + + G+ +TNNR ELMA + L + + E Sbjct: 3 IIAAADGSALGNPGPAGWAWYV---DDDCWHAGGWKESTNNRGELMAVLDLLNSTADAGE 59 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + + DS+YV +T+W+ WK++GWK AD K V N DL ++LD+AL ++++EWVKG Sbjct: 60 DLKVFCDSKYVINALTKWMPGWKRKGWKKADGKDVLNKDLLEQLDSALKGREVEFEWVKG 119 Query: 124 HAGHPENE 131 H+ H NE Sbjct: 120 HSNHAMNE 127 >UniRef50_Q4P0S4 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P0S4_USTMA Length = 1122 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 6 EIFTDGSCLGNPG---PGGYGAILRY---RGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 ++ DGS +GN G+G ++ + TNNR ELMA I A++ Sbjct: 883 TVYCDGSSIGNGRTTARAGWGVFFEDPELHHLNESRRLPGDKQTNNRAELMALIRAVQLC 942 Query: 60 KEHCE-VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH--QI 116 +++ TDS+Y Q +T+W+ W++ G+KT V+N DL LD L + Sbjct: 943 PNDGRQLLIMTDSKYSMQTVTEWLPKWRQNGFKTLAGADVQNQDLIVELDKQLSGRHPRP 1002 Query: 117 KWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 K E VK H G NE D +A+ A P + + Sbjct: 1003 KLEHVKAHVGIHGNEIVDRMAKYGASLPRDDSSDL 1037 >UniRef50_Q7Q3X5 AGAP008088-PA n=1 Tax=Anopheles gambiae RepID=Q7Q3X5_ANOGA Length = 294 Score = 148 bits (374), Expect = 5e-35, Method: Composition-based stats. Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 7/146 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE 61 V ++TDGSC GN + Y + R TNN E+ AA +A+ ++ Sbjct: 141 VHVYTDGSCEGNGTARAVAGLGVYFAEGHALNTAKPVSGRATNNCGEIQAASLAIRLARQ 200 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQIK 117 ++++TDSQ++ IT+W+ WK+R W A PVKN + L+ L QIK Sbjct: 201 QGIRRLVVNTDSQFLINAITKWLPGWKRRNWTLASGGPVKNQTDFMELERELSAGDIQIK 260 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 W V H G NER D+LAR + Sbjct: 261 WNHVDAHCGILGNERADQLARKGSEM 286 >UniRef50_Q1DA37 Ribonuclease H n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DA37_MYXXD Length = 255 Score = 148 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 80/147 (54%), Gaps = 11/147 (7%) Query: 7 IFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-HCE 64 +F DG+C GNPGPGG+G+I+ G TTNNRMEL A AL L+ Sbjct: 8 VFADGACSGNPGPGGWGSIIVTPDGLVTELGGHEPETTNNRMELTAVGKALRHLERAPGP 67 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--------- 115 + + TDS YV QG T+W W +RGWKTA+ V N W+RL A L Q + Sbjct: 68 IHIHTDSTYVIQGATKWAFGWSRRGWKTAEGGEVANAIYWKRLMALLAQRKESHAAEAAA 127 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 + W +++GH G P NER D +A A + Sbjct: 128 VAWFYIRGHVGVPGNERVDAIAVAYSK 154 >UniRef50_A5L3F5 Bifunctional protein: Ribonuclease HI and DNA polymerase III, epsilon subunit n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L3F5_9GAMM Length = 153 Score = 147 bits (372), Expect = 9e-35, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 82/153 (53%), Gaps = 10/153 (6%) Query: 1 MLK-QVEIFTDGSCLGN------PGPGGYGAILRYRGREKTFSAGYTR---TTNNRMELM 50 M + + + TDG+ N G+GA++ G +G TN R EL+ Sbjct: 1 MNETKYIVATDGASNTNHIKANQFSIAGWGALVLKDGTYIHKLSGRIDGVLATNIRAELV 60 Query: 51 AAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 AA+ L+A V L TDS+YV +G+T+W+ NWK++GW+ + KKPV + DLW LD Sbjct: 61 AALEGLKATPLGSSVELFTDSEYVIKGLTEWMDNWKRKGWRNSAKKPVAHKDLWTELDEL 120 Query: 111 LGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 ++ WVKGH+GH NE D LA+ A + Sbjct: 121 YQNRDVQLTWVKGHSGHLLNEEADTLAKEAMTS 153 >UniRef50_B6JLP9 Ribonuclease H n=3 Tax=Helicobacter RepID=B6JLP9_HELP2 Length = 188 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 68/130 (52%), Positives = 80/130 (61%), Gaps = 5/130 (3%) Query: 14 LGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQY 73 LGNPGPGGY AILRY+ +EK S G TTNNRMEL A AL+ LK C + L +DSQY Sbjct: 58 LGNPGPGGYAAILRYKDKEKIISGGEHFTTNNRMELRALNEALKILKRPCHITLYSDSQY 117 Query: 74 VRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERC 133 V Q I W+ NW+K+ + VKNVDLW+ H I W+KGH GH ENERC Sbjct: 118 VCQAINVWLANWQKKNFSK-----VKNVDLWKEFLKVSKGHLIVAVWIKGHNGHAENERC 172 Query: 134 DELARAAAMN 143 D LA+ A Sbjct: 173 DNLAKLEAQK 182 >UniRef50_B4UMK8 Ribonuclease H n=4 Tax=Anaeromyxobacter RepID=RNH_ANASK Length = 183 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 86/147 (58%), Gaps = 8/147 (5%) Query: 4 QVEIFTDGSCLGNPG-PGGYGAIL-------RYRGREKTFSAGYTRTTNNRMELMAAIVA 55 + F+DGS L NPG PGG G ++ G + G TNNRMEL A + A Sbjct: 5 RFIAFSDGSALVNPGGPGGTGFVVLDRARPAYRFGGTRWVEDGPNAVTNNRMELRAVLEA 64 Query: 56 LEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 LE L +V + +DS+YV +++WIH W+K+GW+TA +PV N DL + LDA Sbjct: 65 LEGLPGGEQVEVISDSRYVVDALSRWIHGWRKKGWRTASGEPVLNRDLIEALDARASALS 124 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 +++ WV+GH GH NE D+LA+AAA Sbjct: 125 VRYTWVRGHDGHAVNEVVDQLAQAAAR 151 >UniRef50_D0JBH5 Ribonuclease HI n=3 Tax=Flavobacteria RepID=D0JBH5_BLASB Length = 160 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 12/161 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILR----YRGREKTFSAGYTRTTNNRMELMAAIVAL 56 M +++ I+TDGS GNPGPGGYG + K S G+ TTNNRMEL+A IV L Sbjct: 1 MNQKIHIYTDGSSKGNPGPGGYGIFIETTIGNSYNRKIISEGFRYTTNNRMELLAVIVGL 60 Query: 57 EAL-KEHCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 E + K +++ TDS+Y+ I WIH WKK + KNVDLW+R ++ Sbjct: 61 EKIEKRKQNIVVFTDSKYIVNTIQNNWIHQWKKNNFFQK-----KNVDLWKRFLKIYNKN 115 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMNPTLE-DTGYQVE 154 I ++W+K H H N+ CD L+ A+ L+ D Y+ + Sbjct: 116 IIDFQWIKSHNNHYINDYCDRLSVEASKRKILKIDYIYEKQ 156 >UniRef50_A0JT09 Ribonuclease H n=5 Tax=Actinomycetales RepID=A0JT09_ARTS2 Length = 319 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 5/129 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--H 62 + DGS LGNPGP G+ + + + G+ TNN+ ELMA + Sbjct: 3 ITAAADGSALGNPGPAGWAWYV---NDDCWRAGGWPHGTNNQGELMAVLDLFRCTAHLPG 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 E+ + DSQYV +T+W+ WK++GW+ AD KPV NV++ + +D AL + ++EWV+ Sbjct: 60 EELHILCDSQYVINSVTKWMPGWKRKGWRKADGKPVLNVEILREIDQALSGRKYRFEWVR 119 Query: 123 GHAGHPENE 131 GHAGH NE Sbjct: 120 GHAGHDLNE 128 >UniRef50_B7KMH6 Ribonuclease H n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KMH6_CYAP7 Length = 2805 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 75/146 (51%), Gaps = 18/146 (12%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILR-YRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 + ++TDGS LGNPG GG+ ++ + G+ S T TTNNRMEL A I ++ +KE Sbjct: 2186 PPITLYTDGSSLGNPGSGGWAYVICDHEGQRTANSGAVTDTTNNRMELTAVIEGIKTVKE 2245 Query: 62 H----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 ++ + +DSQYV + I WK + KN DLW + + Sbjct: 2246 TYKDISDIHVVSDSQYVLKSIN---GEWKNK----------KNTDLWDEFNKISQNLNLT 2292 Query: 118 WEWVKGHAGHPENERCDELARAAAMN 143 EWVKGH GH NE CD LA +AA Sbjct: 2293 TEWVKGHNGHELNELCDRLANSAAKE 2318 Score = 47.1 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 13/136 (9%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +Q+ ++T G+ N GG +L + ++ G T + ++L A + LE LK Sbjct: 2412 EQITLYTYGTVDENNKFGGLAFVLESPEFREEWAIGTIDQTEDYVKLRAIVSGLEKLKGL 2471 Query: 63 C---------EVILSTDSQYVRQGITQWIHNWKKRGWKT--ADKKPVKNVDLWQRLDAAL 111 +V + +DS + IT N + + +K +D + V N Sbjct: 2472 KYDHHNPQKIDVKIVSDSTSILNNITGKPQNTEDKEFKNLISDFQKVSNYFNITPQLLTS 2531 Query: 112 GQHQIKWEWVK--GHA 125 + I +VK H Sbjct: 2532 PEGNISATYVKNTAHQ 2547 >UniRef50_D0WKT5 Ribonuclease HI n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WKT5_9ACTO Length = 292 Score = 145 bits (366), Expect = 4e-34, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 4/135 (2%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + TDG+C GNPGPGG+ + + G G TTNN MEL A + ALE + Sbjct: 150 DAIVATDGACSGNPGPGGWAWVEQVTGERDC--GGAAHTTNNAMELTALVRALEHVGPQP 207 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ--IKWEWV 121 ++++ DSQY + +T W W+++GW+ +D PV N DL +RL Q + EWV Sbjct: 208 DLLMRIDSQYAIKAMTVWAKAWRRKGWRKSDGAPVANRDLVERLLELYEGRQGRTEVEWV 267 Query: 122 KGHAGHPENERCDEL 136 KGH+G NE D + Sbjct: 268 KGHSGDAANELVDSM 282 >UniRef50_C0QFZ9 RnhA1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFZ9_DESAH Length = 219 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 17/147 (11%) Query: 1 MLKQ--VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEA 58 M Q ++I+TDG+ GNPGP G G +L Y ++ S R TNN EL A LE Sbjct: 83 MPPQGVIQIYTDGASSGNPGPAGLGVVLLYGDHKREISESIGRATNNVAELNAIKRGLEL 142 Query: 59 LKE-HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-I 116 LK + + TDS Y + + WK P N +L + +G+ + + Sbjct: 143 LKRTDLPIEIHTDSTYCIGVL---VKGWK----------PAMNQELILGIRKLMGRFKQL 189 Query: 117 KWEWVKGHAGHPENERCDELARAAAMN 143 + VKGH+G NER D LA A Sbjct: 190 RLVKVKGHSGVQGNERADALATAGVKK 216 >UniRef50_C4QWX0 Ribonuclease H1 n=1 Tax=Pichia pastoris GS115 RepID=C4QWX0_PICPG Length = 274 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 48/158 (30%), Positives = 67/158 (42%), Gaps = 20/158 (12%) Query: 6 EIFTDGSCLGNPG---PGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 I+TDG+ GN GGYG + TN R EL A AL +++ Sbjct: 118 IIYTDGATRGNGKFGAKGGYGVFFKENDLRNISKPLTGVQTNQRAELSAVRDALIIIEKD 177 Query: 63 ------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--- 113 + TDS+Y IT+W+ WK+ W+TA PV+N DL + + Sbjct: 178 LASGSKKHYTIRTDSRYTINSITKWVTKWKQNDWRTATG-PVQNRDLIEPCTNLIESVNS 236 Query: 114 -------HQIKWEWVKGHAGHPENERCDELARAAAMNP 144 + E+VKGH+G NE D+LA A A Sbjct: 237 KYKELGMPPLNIEYVKGHSGDYGNEMADKLATAGADRA 274 >UniRef50_C1BQR6 Ribonuclease H1 n=2 Tax=Caligus rogercresseyi RepID=C1BQR6_9MAXI Length = 394 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 9/155 (5%) Query: 1 MLKQ--VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIV 54 M K V++FTDG+C+ N G G I + + + R TNN EL A Sbjct: 239 MNKDGWVKVFTDGACIHNGRRGASGGIGIFFWKNSHKNTSEPLIDLRQTNNVAELTAISR 298 Query: 55 ALEALKEHC--EVILSTDSQYVRQGITQWIHNWKKRGW-KTADKKPVKNVDLWQRLDAAL 111 A++ +K ++ + TDSQ+ I + NWKK+ W + + + V+N + LD + Sbjct: 299 AIQIVKSDGLRKIAIYTDSQFAIDSIEFRMPNWKKQNWTRGSSGEDVRNKSEFLVLDDIM 358 Query: 112 GQHQIKWEWVKGHAGHPENERCDELARAAAMNPTL 146 IK+ +V GH N D+LAR + N Sbjct: 359 KNMTIKFIYVPGHRNIYGNNCADKLARRGSGNTKF 393 >UniRef50_B6VBD2 Putative uncharacterized protein (Fragment) n=1 Tax=Caenorhabditis brenneri RepID=B6VBD2_CAEBE Length = 247 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 54/166 (32%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 3 KQVEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEA 58 + + I+TDG L N PG G + Y + + GY TNNR EL A ALE Sbjct: 11 EPLHIYTDGCALRNGQPGAKGGWAIVYELGDFQDAYGYCMDGPQTNNRFELEAIGQALER 70 Query: 59 LKEHC---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 E ++ + TDS+Y I WI WK+ GW+ + K V N L Q +D+ L Sbjct: 71 SLESGGEYDITIFTDSKYAINSIKHWIKKWKQNGWRNSQGKRVHNDLLIQDIDSMLEDIN 130 Query: 116 -----IKWEWVKGHAGHPENERCDELARAAA-MNPTLEDTGYQVEV 155 +++E+V+ H+G+ NE+ D LA+ AA NP + + + Sbjct: 131 YAGGSVEFEYVEAHSGNWFNEKADRLAKKAAFKNPLYSNYDFNYHM 176 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 3 KQVEIFTDGSCLGNPGP---GGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVAL 56 + + I+TDG L N P GG+ + + + + TNNR EL A AL Sbjct: 183 EPLHIYTDGCALRNGQPGAKGGWAIVYEFGNYKNDKGHSDIGYQTNNRYELEAIKQAL 240 >UniRef50_B2GFP5 Ribonuclease HI n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GFP5_KOCRD Length = 371 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 61/140 (43%), Positives = 79/140 (56%), Gaps = 5/140 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK--EH 62 + DGS LGNPGP G+ + + G+ TNN EL A + LEA + Sbjct: 3 IIASADGSALGNPGPAGWAWYI---DPTSWRAGGWAHGTNNMGELTAVLDLLEATRHRRD 59 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVK 122 + + DSQYV +T+W+ WKK+GWK D KPV NVD+ + LD L ++ +EWVK Sbjct: 60 EALTVYCDSQYVINSVTKWMPGWKKKGWKKRDGKPVLNVDIMKALDRELSGRKVTFEWVK 119 Query: 123 GHAGHPENERCDELARAAAM 142 GHAGH NE DE ARA AM Sbjct: 120 GHAGHELNEAADERARAMAM 139 >UniRef50_D1WSF8 Ribonuclease H n=10 Tax=Streptomyces RepID=D1WSF8_9ACTO Length = 249 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 4/145 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTRTTNNRMELMAAIVALEA 58 M + + DG+ GNPGP + ++ + + TNN EL A LE+ Sbjct: 9 MNESIIAACDGASKGNPGPAAWAWVVADALGEPVRWEAGPLGTATNNVAELTALAQLLES 68 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 + V + DSQY +T+W+ WK+ GWKT+ KPV N +L R+DA L + + Sbjct: 69 IDPAVRVEVRMDSQYAMNAVTKWLPGWKRNGWKTSAGKPVANRELVTRIDALLADRPVTF 128 Query: 119 EWVKGHA--GHPENERCDELARAAA 141 +V H G P N D+ A A Sbjct: 129 RYVPAHQVNGDPLNAIADQAADEVA 153 >UniRef50_B4SE10 Ribonuclease H n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SE10_PELPB Length = 146 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 15/153 (9%) Query: 1 MLKQVEIFTDGSCLGNPGPGGY-------GAILRYRGREKTFSAGYTRTTNNRMELMAAI 53 M ++ I+T G + R + + + TTNNRMEL AAI Sbjct: 1 METKITIYT-------GRRIAAQIRALLSGCAVDVRLHDSSIAGYSPATTNNRMELSAAI 53 Query: 54 VALEALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 ALEALKE C V L +DS Y+ I + W+ W WKT+ KK V+N+DLW+++ L Sbjct: 54 EALEALKEPCRVDLYSDSSYLVNAINEGWLKRWTINNWKTSTKKNVENIDLWKKILKLLT 113 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAAMNPT 145 H I + VKGH+ +P N RCD LAR A + Sbjct: 114 LHTITFHKVKGHSDNPYNNRCDTLAREAIKKKS 146 >UniRef50_Q484S6 Ribonuclease HI n=3 Tax=Alteromonadales RepID=Q484S6_COLP3 Length = 272 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 10/151 (6%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY--TRTTNNRMELMAAIVALEALKE 61 +EI+ DG+C NPG G G + G+ + G TNN EL + A + + Sbjct: 100 DIEIYCDGACSPNPGKSGTGLAVYELGKVTSLYYGLYLPNGTNNTAELSGMLSAFQIAQH 159 Query: 62 ------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--Q 113 + + +DS+Y IT+W WK +GW + +KN+ L Q+ A Sbjct: 160 FIDKNSEQSICILSDSKYSIDSITKWAKGWKAKGWTRGKGEEIKNLALIQQCYALYKTMH 219 Query: 114 HQIKWEWVKGHAGHPENERCDELARAAAMNP 144 +I VKGHA NE D +A A Sbjct: 220 TKITIRHVKGHANIEGNELADRMAVLARKQQ 250 >UniRef50_C4QPU4 Phosphoglucomutase, putative n=5 Tax=Schistosoma mansoni RepID=C4QPU4_SCHMA Length = 826 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 8/159 (5%) Query: 3 KQVEIFTDGSCLG--NPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 ++V ++TDGSC G + GYG TNNR E+ A I A++ Sbjct: 123 RRVMVYTDGSCNGAHDDRRAGYGVYWGPNHPWNVSERLEGEQTNNRAEIEAVICAIKQAH 182 Query: 61 EHC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQI 116 + + TDS++ + T+W W + WK A+ + K + +RL + +I Sbjct: 183 IGGITHLGIVTDSKFTQNCATEWGQRWARNAWKLANGEDAKLKEPVKRLLEVIAESGIEI 242 Query: 117 KWEWVKGHAGHPENERCDELARAAAM--NPTLEDTGYQV 153 W V+ H G NE D LA A+ PT G + Sbjct: 243 IWYHVRSHRGVHGNEEADSLANIGAIDVKPTKSFPGQKP 281 >UniRef50_Q6CHD9 YALI0A09878p n=1 Tax=Yarrowia lipolytica RepID=Q6CHD9_YARLI Length = 276 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 9/149 (6%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEAL 59 + ++TDG+ N + G + + TN R EL A A + + Sbjct: 128 PIPVYTDGASRNNQSSNAKAGYGIFFGNGSEDNVSKPLAGMQQTNQRAELTAIYEACKII 187 Query: 60 KEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL--GQH 114 K+ + + TDSQY + +W NW++ GWK + V N D+ + L Sbjct: 188 KDRNDRRYYDIRTDSQYSISCLKEWGMNWERNGWKNSKGADVSNQDIIKPARNLLISLGD 247 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMN 143 +++ VKGH+ P N+ D LA A Sbjct: 248 RVRLTKVKGHSSDPGNDAADALAVRGAEM 276 >UniRef50_UPI000185C12F ribonuclease H n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C12F Length = 301 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 5/130 (3%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61 + DGS L NPGP G+ + + G+ TNNR EL A L A Sbjct: 2 NITAAVDGSALHNPGPAGWCWYI---DDSCWAAGGWKEGTNNRGELTALAELLRATAHIP 58 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 + + DSQYV +T+W+ WK++GWK D KPV NVD+ Q +D L I EWV Sbjct: 59 DEPLFVLCDSQYVINSVTKWMPGWKRKGWKKRDGKPVLNVDILQDIDQLLVGRNIHLEWV 118 Query: 122 KGHAGHPENE 131 KGH+GH NE Sbjct: 119 KGHSGHDMNE 128 >UniRef50_C4YSL5 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=C4YSL5_CANAL Length = 465 Score = 141 bits (356), Expect = 6e-33, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 26/163 (15%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---------RTTNNRMELMAAIVALE 57 ++ DG+C N G Y G E + R TN R EL A AL+ Sbjct: 290 VYVDGACRNNGRENAKGGYGVYYGDEDPRNVSVPLDRVDPNGIRPTNQRAELWAMNHALK 349 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + I+ +DS Y +T+W W GW+ + + + N +L + Sbjct: 350 NILNELQDETEKGKAIIYSDSIYAINCLTKWPEKWIYNGWQNSRGRTISNQELIEENYDL 409 Query: 111 LGQHQ----------IKWEWVKGHAGHPENERCDELARAAAMN 143 +++ VKGH+G NE D LA A Sbjct: 410 YESINEEYDDRDWGSLRFVHVKGHSGVEGNEEADRLANLAVDE 452 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 26/163 (15%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---------RTTNNRMELMAAIVALE 57 I+ DG+C N P Y G + + TN R EL A AL Sbjct: 57 IYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPTNQRAELWAMNHALR 116 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + ++ +DS Y + +T+W + W + GW + + N DL + Sbjct: 117 NIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVHGQTISNYDLVTKNYEL 176 Query: 111 LGQH----------QIKWEWVKGHAGHPENERCDELARAAAMN 143 ++ VKGH+G+ NE D LA AA Sbjct: 177 YEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAADR 219 >UniRef50_UPI000051AB6A PREDICTED: similar to Ribonuclease H1 (RNase H1) (Ribonuclease H type II) n=2 Tax=Apocrita RepID=UPI000051AB6A Length = 261 Score = 141 bits (355), Expect = 8e-33, Method: Composition-based stats. Identities = 47/141 (33%), Positives = 68/141 (48%), Gaps = 5/141 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKE 61 V ++TDG+C N I + G + R TNN E+ A +A + K+ Sbjct: 117 VNVYTDGACSLNGHKNAQAGIGVWFGNNHPLNISKAVIGRATNNMAEIQAVTIAAKQAKK 176 Query: 62 HC--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 + ++TDSQ++ I W+ WK+ GWKT + KPV N ++ AL + W Sbjct: 177 AGIKNLKINTDSQFLISCINNWMPKWKRNGWKTFNNKPVINKIELLEMENALKSLNVIWN 236 Query: 120 WVKGHAGHPENERCDELARAA 140 V GHAG NE D+LARA Sbjct: 237 HVNGHAGIYGNEMADKLARAG 257 >UniRef50_C0QLK2 RnhA2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLK2_DESAH Length = 201 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 17/143 (11%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGR-EKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + I+TDG+C GNPGP G G ++ S TNN EL A + +E +K+H Sbjct: 71 PIFIYTDGACSGNPGPAGSGVVVIQNDIIVHEISESLGPATNNIAELTAIKLGIEFVKDH 130 Query: 63 C--EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWE 119 V L TDS+Y +T NWK + NV+L + + + + +K Sbjct: 131 HETPVTLYTDSRYAIGILT---MNWKAK----------ANVELVESIRKLMKPFKRLKVV 177 Query: 120 WVKGHAGHPENERCDELARAAAM 142 VKGH+GHP NER D LA +M Sbjct: 178 HVKGHSGHPGNERADLLAVRGSM 200 >UniRef50_C4WXR8 ACYPI28043 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WXR8_ACYPI Length = 157 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 7/145 (4%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALK 60 V ++ DG+C N G + + + TNN E+ AA+ A++ L Sbjct: 10 DVVVYVDGACPRNGTRGARAGVGVWFDDFHDLNVSSTVPGIQTNNNAEIYAAVKAIDMLL 69 Query: 61 EHC---EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-I 116 ++ V + TDS ++ + +WI+ WK GW+ V N D+ ++LD+ + + Sbjct: 70 KYTDEYRVEIMTDSMFLCNCMYKWINKWKCNGWRNCKGNTVANKDMLEQLDSCIKAMDSV 129 Query: 117 KWEWVKGHAGHPENERCDELARAAA 141 K+ +V+ H H N++ D+LAR A Sbjct: 130 KFTYVRAHNKHYGNDQADKLARQGA 154 >UniRef50_B0WK63 Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0WK63_CULQU Length = 186 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC- 63 V ++TDGS GN ++ Y G +A R TNN E +AA +A+ K+ Sbjct: 21 VYVYTDGSWEGNGTAAACAGLVVYFGEGHALNAVSGRATNNCGEFLAAALAIRLTKQQGI 80 Query: 64 -EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-----HQIK 117 + ++TDS+++ IT+W+ WK+ WK + KPVKN ++ LD + +IK Sbjct: 81 KRLTVNTDSKFLVNSITKWLPGWKRNAWKLSTGKPVKNQVDFEELDPLDQELAEKSIKIK 140 Query: 118 WEWVKGHAGHPENERCDE 135 W H NER D Sbjct: 141 WNHADAHCVILGNERADA 158 >UniRef50_Q6C6C0 YALI0E10725p n=1 Tax=Yarrowia lipolytica RepID=Q6C6C0_YARLI Length = 474 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 10/147 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY----TRTTNNRMELMAAIVA---LEA 58 ++F DG+C N GP Y G ++ T T+ R EL A + A +E Sbjct: 303 QVFVDGACSNNGGPDAKAGYGLYFGENNPWNVAASVMGTVHTSQRAELQAIMKAYQVIEK 362 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG---QHQ 115 + +DS Y +T+W H+WKK GWKT++ KPV+NVDL Q + + Sbjct: 363 KDNGHSYEIMSDSSYAINCLTKWRHDWKKHGWKTSEGKPVENVDLIQDCIKIMDRLVKRG 422 Query: 116 IKWEWVKGHAGHPENERCDELARAAAM 142 I + V+ H N+R D LAR Sbjct: 423 IALKKVQAHGDSKGNKRADVLARQGVQ 449 >UniRef50_B8CNS8 Ribonuclease H n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CNS8_SHEPW Length = 183 Score = 138 bits (348), Expect = 5e-32, Method: Composition-based stats. Identities = 69/106 (65%), Positives = 85/106 (80%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 LKQ+ IFTDGSCLGNPGPGGYG +++Y+ + G+ TTNNRME++A IVALEALK Sbjct: 25 LKQISIFTDGSCLGNPGPGGYGIVMKYKKHTHELAGGFALTTNNRMEMLAPIVALEALKV 84 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 C+VIL++DSQY+RQGITQWIH WK+ GW T+ K+ VKNVDLW L Sbjct: 85 PCQVILTSDSQYMRQGITQWIHGWKRNGWVTSTKQAVKNVDLWHVL 130 >UniRef50_A6QCI9 Ribonuclease H n=5 Tax=Bacteria RepID=RNH_SULNB Length = 147 Score = 137 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 72/142 (50%), Positives = 91/142 (64%), Gaps = 5/142 (3%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 KQ+ +++DGS LGNPGPGGYG IL Y+G K + G TTNNRMEL I L+ LKE Sbjct: 6 RKQITLYSDGSSLGNPGPGGYGGILEYKGSRKEYFGGEEETTNNRMELRGVIEGLKLLKE 65 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWV 121 C+V + +DS YV + I +W+ +W +R +K VKNVDLW+ A H + WV Sbjct: 66 PCDVEVVSDSSYVVKAINEWLESWIRRDFKK-----VKNVDLWKAYIEAAAPHHVHGTWV 120 Query: 122 KGHAGHPENERCDELARAAAMN 143 +GH GHPENERCDELAR A Sbjct: 121 RGHDGHPENERCDELARNEAER 142 >UniRef50_A1SDS5 Ribonuclease H n=1 Tax=Nocardioides sp. JS614 RepID=A1SDS5_NOCSJ Length = 143 Score = 137 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 7/139 (5%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 E+FTDG+C GNPGPGG+ L S +TN RME+ AA+ A+ +L + Sbjct: 9 EVFTDGACSGNPGPGGWAWAL---DTAVYASGREAPSTNQRMEIRAALEAVRSL--DGPL 63 Query: 66 ILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKG 123 ++ +DS YV W W R W ++ +KPV N DLW+ L + + + WVKG Sbjct: 64 LVVSDSTYVVHCFRDLWWQGWLDRDWVSSARKPVANRDLWEPLVGLVQDRGDVAFAWVKG 123 Query: 124 HAGHPENERCDELARAAAM 142 H+GH N+ D LA AA Sbjct: 124 HSGHVMNDFVDRLAVAATR 142 >UniRef50_UPI00016B24DF ribonuclease HI n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B24DF Length = 141 Score = 137 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 67/143 (46%), Gaps = 6/143 (4%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEHC 63 + +TDGS NPGPGG+ I R + TTN RME A I AL + Sbjct: 2 ITYYTDGSASPNPGPGGFAVI---RDLQPWILGSEDGETTNIRMEGKALIAALRDA-DGA 57 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 + TDS++ +T+W W++RGW T +KN+D+ Q L Q Q WV+G Sbjct: 58 PCAIYTDSEFWINVVTKWAPGWQQRGW-TKKGGEIKNLDIVQELYELYAQSQADLRWVRG 116 Query: 124 HAGHPENERCDELARAAAMNPTL 146 H G NE DE A A L Sbjct: 117 HEGDEGNELADEWANRAREGERL 139 >UniRef50_Q12R78 Ribonuclease H n=22 Tax=Proteobacteria RepID=Q12R78_SHEDO Length = 263 Score = 137 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 9/158 (5%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVAL----E 57 + I+TDG C NPG G G L ++G+ E + + + TNN EL A AL Sbjct: 94 DIVIYTDGGCEPNPGEAGSGLALYHKGQLTELWYGLYHPKGTNNTAELNALYQALLIAKT 153 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 L +V + +DSQY + I++W + WK +GW + + N+D+ + + + Sbjct: 154 KLDAGHKVQIFSDSQYSIKCISEWAYGWKAKGWSRKGGE-IANLDIIKLAHGVFDELKDT 212 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 +K E V H G NE D ++ A Y Sbjct: 213 LKLEHVAAHVGIEGNELADRMSILAITEKNPAFVKYDK 250 >UniRef50_Q6CGX9 YALI0A15059p n=1 Tax=Yarrowia lipolytica RepID=Q6CGX9_YARLI Length = 225 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 11/149 (7%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSA----GYTRTTNNRMELMAAIVALEALKE 61 E++TDG+C+ N Y G F+ G T TN R EL+A AL+ ++E Sbjct: 73 EVYTDGACIRNGKRDARAGCGVYFGANNPFNESKILGGTLQTNQRAELVAIKRALQLIQE 132 Query: 62 ---HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG----QH 114 + TDS Y + +T+W W++ GW PV N D + + L ++ Sbjct: 133 WVNGEYYEIYTDSDYALKCVTEWCDKWERNGWVNCKGYPVSNQDTIKDILKLLNSVGCRN 192 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAMN 143 + E V H+ N DELAR AA Sbjct: 193 VLGIEKVLAHSDCEGNNGADELARDAAER 221 >UniRef50_Q6CHQ1 YALI0A06523p n=1 Tax=Yarrowia lipolytica RepID=Q6CHQ1_YARLI Length = 369 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 10/151 (6%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFS----AGYTRTTNNRMELMAAIVAL----E 57 +IFTDG+C N Y G + + TN R EL A + A Sbjct: 208 QIFTDGACSRNGQKDAVAGFGLYLGENHKENLSGRVYGSPQTNQRAELTAILHAYCICAS 267 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--HQ 115 L + + TDS Y +T+W W++ GW+ +PV N D+ +R+ + + Sbjct: 268 KLSDGRLYEIYTDSSYAIDCLTKWHIAWERNGWRNRGGEPVANQDVIKRILTLKAESTNC 327 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTL 146 I + V+ H N++ D LAR L Sbjct: 328 IGLKKVEAHGSSEGNKQADRLARQGVTAKNL 358 >UniRef50_A8B979 Ribonuclease H n=2 Tax=Giardia intestinalis RepID=A8B979_GIALA Length = 352 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 9/154 (5%) Query: 3 KQVEIFTDGSCLGN-PGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 FTDG + GPGG+G +L F+ Y TTNNRMEL + AL + + Sbjct: 194 PDYVAFTDGGSTPSAGGPGGWGCLLFNATEMHVFARSYKSTTNNRMELRGILCALLNVPQ 253 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRG---WKTADKKPVK-----NVDLWQRLDAALGQ 113 + + +DSQY W+ WKK+G + ++K + N DL + A + Sbjct: 254 GSVLHIYSDSQYAINCCRVWLTQWKKKGLLCPQNPNRKDIINAKPLNKDLLLWIYAEMQS 313 Query: 114 HQIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 +K+ VKGH+G+ N+ D L E Sbjct: 314 RTVKFVHVKGHSGNSLNDFVDGLCYLGRRKQAPE 347 >UniRef50_A5E5Q5 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E5Q5_LODEL Length = 321 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 28/167 (16%) Query: 6 EIFTDGSCLGNPG-PGGYGAILRYRGREKTFSAGYT----------RTTNNRMELMAAIV 54 +I+TDG+ GN Y GR +A TN R EL A Sbjct: 149 KIYTDGASRGNGKSRTAASGYGVYYGRNDPRNAAVPLSSVDDIHTVAPTNQRAELHAIHH 208 Query: 55 ALEALKE-------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 AL+ +K + + +DS+Y Q + +W + W K GW KPV N D+ + Sbjct: 209 ALKNIKNELATAPTGKQYSIHSDSKYAMQCVDEWSNKWLKNGWTNTAGKPVANADIIKEA 268 Query: 108 DAALGQH----------QIKWEWVKGHAGHPENERCDELARAAAMNP 144 + +++ VKGHAG NE D LA A Sbjct: 269 VQLKNEINEIHQQRGHQPLQFVHVKGHAGDERNEAADRLANIGADQM 315 >UniRef50_Q6CH42 YALI0A12705p n=1 Tax=Yarrowia lipolytica RepID=Q6CH42_YARLI Length = 236 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 9/148 (6%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEAL 59 +V ++TDG+C N G + Y G + R TN R EL A A+E + Sbjct: 87 RVPVYTDGACHNNQGSNARAGVGVYFGPGHPDNVSRPVQGSRQTNQRAELEAIHDAVETI 146 Query: 60 ---KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-- 114 + + TDS Y + +W NW++ W T+ +PV++ DL + L Sbjct: 147 HRRNDGINYEVKTDSAYAQNAFNKWGSNWQQNNWTTSKNEPVQHRDLIEPTLNRLNDLGD 206 Query: 115 QIKWEWVKGHAGHPENERCDELARAAAM 142 +++ VKGH+G+P N+ D+LA A Sbjct: 207 RVEISKVKGHSGNPGNDAADKLAGKGAR 234 >UniRef50_B4VV33 RNase H, putative n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VV33_9CYAN Length = 1624 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 21/141 (14%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGRE------KTFSAG-YTRTTNNRMELMAAIVA 55 K+V ++ DGS LGNPG GG+G +L Y + + S +TTN+RME++AAI Sbjct: 1267 KKVVMYCDGSSLGNPGQGGWGVVLSYTNPQTGQTTTRELSGADSEQTTNSRMEILAAIKG 1326 Query: 56 LEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ 115 LEA+++ CEV + TDS Y+ + K N DL RLD HQ Sbjct: 1327 LEAIQDTCEVEIHTDSNYLIGAM--------------QGNKRKANQDLLTRLDELSQNHQ 1372 Query: 116 IKWEWVKGHAGHPENERCDEL 136 I W VKGH+G+ NERCD+L Sbjct: 1373 ISWHHVKGHSGNALNERCDQL 1393 >UniRef50_B9WJ33 Ribonuclease H, putative n=6 Tax=Saccharomycetales RepID=B9WJ33_CANDC Length = 266 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 62/165 (37%), Gaps = 28/165 (16%) Query: 7 IFTDGSCLGNPG----PGGYGAILRYRGREKTF-------SAGYTRTTNNRMELMAAIVA 55 ++ DG+ GN P GYG + TN R EL A Sbjct: 98 VYVDGAARGNGQTSKAPSGYGVYYGPNDSRNAAVPLDRVDKNTSYKPTNQRAELHGVKHA 157 Query: 56 LEALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD 108 L+ + + +DS+Y Q I +W NW K GWK + +PV N DL Q Sbjct: 158 LKNIHNDLQSGKATGRTEIHSDSKYAIQSINEWSSNWAKNGWKNSKGEPVANKDLIQETV 217 Query: 109 AALGQH----------QIKWEWVKGHAGHPENERCDELARAAAMN 143 A +K+ VKGHAG P NE D LA A Sbjct: 218 ALKNNINKTYQDKNWGNLKFVHVKGHAGDPGNEAADRLANQGADQ 262 >UniRef50_A1D7S4 RNase H domain protein n=1 Tax=Neosartorya fischeri NRRL 181 RepID=A1D7S4_NEOFI Length = 321 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 27/175 (15%) Query: 2 LKQVEIFTDGSCLGNPG---PGGYGAILR--YRGREKTFS---------AGYTRTTNNRM 47 ++ I+TDG+CLGN G G + R GR F+ T+NR Sbjct: 146 SNEMLIYTDGACLGNGQANPRAGCGVVFREERPGRMGHFAFALELQGPTGHPRPQTSNRA 205 Query: 48 ELMAAIVALEALKEHC----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDL 103 EL A I AL+ +++++TDS+YV +G T WI W + GW+T+ +PVKN DL Sbjct: 206 ELRAVIAALQFRIWPGEGWTKIVIATDSEYVVEGATSWIKGWVRNGWRTSRGRPVKNKDL 265 Query: 104 WQRLD-----AALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 W+ L AA + ++++ + N D A+ AA T + Sbjct: 266 WKCLLGWCEAAAKEKTKLEFWRIP----REWNAEADGWAKLAADEDVRPTTFIKP 316 >UniRef50_Q6BQV8 DEHA2E01870p n=2 Tax=Debaryomyces hansenii RepID=Q6BQV8_DEBHA Length = 306 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 30/171 (17%) Query: 7 IFTDGSCLGNPGP----GGYGAILRYRGR-------EKTFSAGYTRTTNNRMELMAAIVA 55 I+ DG+ GN GYG + + + TN R EL A A Sbjct: 132 IYVDGASRGNGKIRMPISGYGVFYSASDKRNGAISLNQIDDVHVNKPTNQRAELFAIKHA 191 Query: 56 LEALKEH---------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR 106 L + + + +DSQY + IT+W +W K WKT+ KPV N D+ Sbjct: 192 LIDIANEIVECNDKVTTKYEIYSDSQYAQSCITKWCDDWMKNNWKTSQGKPVSNKDIISS 251 Query: 107 -------LDAALGQH---QIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 ++ +H +++ V+GH G NE D LA A + E Sbjct: 252 VIPILNYINQYYNKHHFGDLQFFHVRGHKGDYGNEMADRLANIGADDMEKE 302 >UniRef50_A5E5Q8 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E5Q8_LODEL Length = 331 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 28/175 (16%) Query: 1 MLKQVEIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYT----------RTTNNRMEL 49 M I+TDG+C GN Y G+ + TN R EL Sbjct: 145 MPNVTRIYTDGACRGNNRRRLAASGYGVYYGKHDIRNKAVPLSDVDDVDNIPPTNQRAEL 204 Query: 50 MAAIVALEALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD 102 A + AL + + C + +DS Y + I W W K GW+ K+PV N D Sbjct: 205 HAVLHALRNIDKELDKAIYKCRYAICSDSIYALKCIKIWSAKWLKNGWQNVAKRPVANAD 264 Query: 103 LWQRLDAALGQHQ----------IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + + + +++ V+GH+G+ N+ D LA A +E Sbjct: 265 IIKEAVRLTAKIDDVYGQLGWNSLQFIHVRGHSGNKGNDIADNLASIGADEMAME 319 >UniRef50_Q2S3J4 Ribonuclease H n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3J4_SALRD Length = 307 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 13/139 (9%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC 63 + I TDG+C+ NPGPGG+ A++ + G + TTNNRMEL A AL + Sbjct: 169 RYRISTDGACISNPGPGGWAAVIVHDGEVRRIMGRVDDTTNNRMELWAIGEALSEIPSDS 228 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG 123 EV + +DS+Y + + + +N L + + + +H+++W V+G Sbjct: 229 EVEIRSDSRYAIKIA-------------SGEWNASENRALVEAVRRQVDRHEVEWTKVEG 275 Query: 124 HAGHPENERCDELARAAAM 142 H+G PENE D+LA AA Sbjct: 276 HSGDPENEEADDLAEAAVR 294 >UniRef50_B9WIZ5 Ribonuclease H, putative n=4 Tax=Candida RepID=B9WIZ5_CANDC Length = 233 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 59/163 (36%), Gaps = 26/163 (15%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT---------RTTNNRMELMAAIVALE 57 I+ DG+C N P Y G + + TN R EL A AL Sbjct: 57 IYVDGACRHNGSPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGLIPTNQRAELWAMNHALR 116 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + I+ +DS Y + +T W W + GW + + N DL + Sbjct: 117 NIWNELEEETEDGKAIIYSDSIYAIKCLTDWPQKWTRNGWLNVHGQTISNYDLVTKNYEL 176 Query: 111 LGQH----------QIKWEWVKGHAGHPENERCDELARAAAMN 143 Q+ V+GH+G+ NE D LA AA Sbjct: 177 YEWINDEYDDRGWGQLNLIHVRGHSGNDGNEEADNLANLAADR 219 >UniRef50_D2EJR4 RNase HI n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EJR4_PEDAC Length = 252 Score = 132 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 16/149 (10%) Query: 3 KQVEIFTDGSCLGNPGP----------GGYGAILRYRGREKTFSAGYTRTTNNRMELMAA 52 ++ ++TDG + +L+ +E + S G TNNRMEL A Sbjct: 81 DRILLYTDGGSRNTGTVKGGHVRQADLAAWAYLLKKDDQEYSQSGGEFGATNNRMELTAL 140 Query: 53 IVALEALK----EHCEVILSTDSQYVRQGIT-QWIHNWKKRGWKTADKKPVKNVDLWQRL 107 LE + + + +DS+Y+ IT +W+ W++RGWK + PV N +LWQ++ Sbjct: 141 WRGLETALAKVGKDAPITVISDSKYILNAITKKWLAGWQRRGWKKSTGDPVANQELWQQI 200 Query: 108 DAALGQH-QIKWEWVKGHAGHPENERCDE 135 L Q +++ W KGHA + N D Sbjct: 201 AKLLPQFTDLQFLWTKGHATNQGNIFVDH 229 >UniRef50_A9EZR8 Ribonuclease H n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EZR8_SORC5 Length = 250 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 49/149 (32%), Positives = 68/149 (45%), Gaps = 15/149 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 V ++ DG+C GNPGP G G ++ GR S TNN EL A + +LE + E Sbjct: 111 VIVYADGACSGNPGPAGLGVVIIDGGRRIERSEFLGTATNNIAELTAILRSLEEVDEPGR 170 Query: 65 -VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD-AALGQHQIKWEWVK 122 +++ TDSQY + + WK + N +L L A + + + +V Sbjct: 171 PIVIHTDSQYSIGVLQK---GWKAK----------ANTELIASLRGALAARPRARLVYVP 217 Query: 123 GHAGHPENERCDELARAAAMNPTLEDTGY 151 GHAG NER D LAR A T Y Sbjct: 218 GHAGVLLNERADALAREAVRERASRRTVY 246 >UniRef50_D0LP47 Ribonuclease H n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LP47_HALO1 Length = 215 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 16/144 (11%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK-- 60 + I+TDG+C GNPGP G GA++ + S TNN EL+A ALEA+ Sbjct: 83 DAIIIYTDGACTGNPGPAGIGAVILDGEERREISEYLGEGTNNIAELVAIERALEAVAPE 142 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWE 119 + +V++ +DS Y +++ WK P NV+L R+ A ++++ Sbjct: 143 DARQVVVHSDSSYAIGLLSK---GWK----------PKANVELVGRIRALTAAVRRLRFV 189 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 VKGHAG PENERCDELAR A Sbjct: 190 KVKGHAGIPENERCDELARDAITR 213 >UniRef50_C4XZS8 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4XZS8_CLAL4 Length = 303 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 62/158 (39%), Gaps = 19/158 (12%) Query: 7 IFTDGSCLGNPGPG----GYGAILRYRGREKTFSAGYT-------RTTNNRMELMAAIVA 55 ++ DG+ GN G GYG + + + TN R EL A + A Sbjct: 141 VYVDGAARGNGKSGIPNAGYGVYFGPNDKRNVSQGLHEVDDVDRIKPTNQRAELHALVHA 200 Query: 56 LEALKEHCE--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ----RLDA 109 L+ + + TDS Y + + W W+ GW + V N DL Q + Sbjct: 201 LDVAAKDSTTGYEILTDSAYAKNCVETWADKWEANGWVNTRGEKVANKDLVQSALTKYRE 260 Query: 110 ALGQH--QIKWEWVKGHAGHPENERCDELARAAAMNPT 145 A +H V+GH+G NE+ D LA A + T Sbjct: 261 AKERHGDDFSITHVRGHSGIEGNEQADSLANKGADDMT 298 >UniRef50_B8FI74 Ribonuclease H n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FI74_DESAA Length = 225 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 73/143 (51%), Gaps = 15/143 (10%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + +TDG+ NPGP G G +L+Y+G K S TTNN EL A +VAL+ +K+ Sbjct: 90 NAIIAYTDGASSHNPGPAGLGVLLKYKGHAKEISQYIGETTNNVAELSAILVALQNIKKR 149 Query: 63 C-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEW 120 V + TDS+Y + WK + NV+L ++ + + + IK W Sbjct: 150 ELPVRIFTDSKYSFGVL---FQGWKAK----------ANVELIAKIQNEISKFRDIKCYW 196 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGHA +P NE D+LA A N Sbjct: 197 VKGHADNPYNEIADKLATDAIKN 219 >UniRef50_C7GZL7 Ribonuclease HI n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZL7_9FIRM Length = 206 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 38/188 (20%) Query: 3 KQVEIFTDGSCLGNP---GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 ++ I++DGSC GN GG+GAIL +R +K G TTNN MEL+A I A + Sbjct: 6 NRIRIYSDGSCRGNQSDENLGGFGAILEFRDHKKEVKGGMVNTTNNVMELLAIIKAFRLI 65 Query: 60 KEHC-EVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 K V + +DS Y+ +Q W W+K G+ T+ K+PVKNV+LW+ L + + Sbjct: 66 KTDKYSVDVFSDSAYIVNCFSQGWYKKWEKNGFITSSKEPVKNVELWKELIGYNAKFNVV 125 Query: 118 WEWVKGHAGHP--------------------------------ENERCDELARAAAMNPT 145 + +KGH N R D LA +AA Sbjct: 126 FHKIKGHLDLDATEATLKKAYTHFLKDKSNKLYTYDDFMYIACMNNRADALATSAASELV 185 Query: 146 LEDTGYQV 153 + G++ Sbjct: 186 RHE-GFEP 192 >UniRef50_Q04CJ1 RNase HI n=5 Tax=Lactobacillus RepID=Q04CJ1_LACDB Length = 255 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 21/160 (13%) Query: 6 EIFTDGSCLGNPG----------PGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVA 55 IFTDG C N + ++ Y G++ + S G TNN ME+ A + + Sbjct: 96 HIFTDGGCRNNGTHKGGHVQADDKAAWAYLIEYGGQKLSASGGRFGATNNEMEMTAFLES 155 Query: 56 LEALKE----HCEVILSTDSQYVRQGITQ------WIHNWKKRGWKTADKKPVKNVDLWQ 105 L+ L+E ++ S DSQYV + ++ WI W++RGWK AD PV N +LWQ Sbjct: 156 LKKLEELGLNDQPLLFSLDSQYVIKAVSDNDQGPAWIKGWQRRGWKKADGSPVANRELWQ 215 Query: 106 RLDAALGQH-QIKWEWVKGHAGHPENERCDELARAAAMNP 144 + + + Q ++EWVKGHA N D L Sbjct: 216 EIAKEMAKFAQPEFEWVKGHANSAGNNFVDGLLNKYMDQM 255 >UniRef50_Q03HC1 RNase HI n=3 Tax=Lactobacillaceae RepID=Q03HC1_PEDPA Length = 272 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 16/169 (9%) Query: 1 MLKQVEIFTDGSCLGNPGP----------GGYGAILRYRGREKTFSAGYTRTTNNRMELM 50 + + ++TDG + +++ G + S G TNNRME+M Sbjct: 69 VTPSIILYTDGGSRNTGNVRGGHVRKEDVAAWAFLIQKDGESISGSNGEFGATNNRMEIM 128 Query: 51 AAIVALEALK----EHCEVILSTDSQYVRQGI-TQWIHNWKKRGWKTADKKPVKNVDLWQ 105 A I L+ + E V++ DS+YV I W+ W++RGWK A+ + V N +LWQ Sbjct: 129 ALINGLQKIIDRYGEKAAVLVVADSKYVLDAIQRNWLSGWQRRGWKKANGEIVANKELWQ 188 Query: 106 RLDAALGQ-HQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQV 153 + + L + +++ W KGHA + N D+L E T ++ Sbjct: 189 AVASILKRMPNLEYRWTKGHATNEGNVFVDQLLNKTMDRMLREPTEFEA 237 >UniRef50_Q0URN5 Putative uncharacterized protein n=2 Tax=Leotiomyceta RepID=Q0URN5_PHANO Length = 613 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 9/152 (5%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALEALK 60 + ++TDGS LGN G G + Y G + + R TN R EL A AL+ + Sbjct: 231 INVYTDGSALGNGKVGAVGGVGVYFGPNDSRNISEPLRGSRQTNQRAELTAVARALDHIP 290 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-----Q 115 ++ TDS Y + +T+W W+K WK++ K V+N DL + + A + + + Sbjct: 291 IDRSALIHTDSNYSIKCLTEWFQKWEKNNWKSSSGKDVENKDLVEPIIARIRERDMCRAK 350 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 ++W+KGHA P N D LA + T E Sbjct: 351 TDFKWIKGHANDPGNVAADLLAVQGSRTSTPE 382 >UniRef50_B6BHK3 Ribonuclease H n=2 Tax=Proteobacteria RepID=B6BHK3_9PROT Length = 272 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 9/160 (5%) Query: 4 QVEIFTDGSCLGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVAL----E 57 V I+ DG C NPG G G + E + TNN EL A +L + Sbjct: 103 NVTIYCDGGCTPNPGKAGSGVAVYRNDTLSELWYGLYEEMGTNNTAELGALYESLLLAQK 162 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQ 115 V + DS Y I W +W+K+GW T +KN+++ + ++ Sbjct: 163 EAVNGNTVEIKCDSMYSINCIKTWAISWEKKGW-TKKGGEIKNLEIIKLSYHLYNSIKND 221 Query: 116 IKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV 155 + +K H+G NE D + + + Y E+ Sbjct: 222 VTLSHIKAHSGFEGNELADRMTMYTILEKSESFVKYDKEI 261 >UniRef50_Q6ML79 RnhA protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML79_BDEBA Length = 153 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 4/141 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREK-TFSAGYTRTTNNRMELMAAIVALEAL 59 L + E++TDGS G G + ++ R R S TR T+N+ME AAI AL +L Sbjct: 12 FLPRFEVYTDGSVKN--GRGAWAYVVVRRNRVLREASGVQTRPTSNQMEFQAAIEALSSL 69 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 E ++L TDS+ + + + + + WK GW + +P+ V+ ++LD L +++W+ Sbjct: 70 PEKSRIVLYTDSRVLIETLQK-VPEWKGLGWVKSRGQPIPQVNQLKQLDQLLTVRKVQWK 128 Query: 120 WVKGHAGHPENERCDELARAA 140 WVK H+G NERCD L A Sbjct: 129 WVKAHSGIKHNERCDVLCVRA 149 >UniRef50_A5D9X8 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X8_PICGU Length = 243 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 27/168 (16%) Query: 6 EIFTDGSCLGNP----GPGGYGAILRYRGREKTFSAGYTRT-----TNNRMELMAAIVAL 56 I+ DG+C N GYG + G + + + TN R EL A A+ Sbjct: 74 HIYIDGACKRNGMASQRKTGYG-VFYGNGDVRNAAVSSSNADKLSGTNQRSELRALYHAI 132 Query: 57 EALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 + + TDS+YV + W WK GW+T + V N DL +R+ Sbjct: 133 INIVNDINDDGTTKAYTIHTDSKYVIRASGIWAKKWKSNGWRTTTGRVVANQDLIKRIVF 192 Query: 110 ALGQH----------QIKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 L + +K E+V GHAG+ NE D+LA AA Sbjct: 193 YLKEINERLANIGLPPVKIEYVPGHAGNHGNEMADKLANKAADEDGEP 240 >UniRef50_A5D9X7 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X7_PICGU Length = 260 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 26/163 (15%) Query: 6 EIFTDGSCLGNPG----PGGYGAILRYRGREK-----TFSAGYTRTTNNRMELMAAIVAL 56 I+ DG+ GN GYG + TN R EL A AL Sbjct: 96 HIYVDGAARGNGKVRSPKSGYGVFYGEGDERNAAVPLSKVDSDRTGTNQRAELHALNHAL 155 Query: 57 EALKE-------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 + + + E I+ +DSQY + + +W WK GW+TA PV N DL ++ Sbjct: 156 DDISKELNQGNTPKEYIIHSDSQYTIKAVGEWAKKWKTNGWRTASGTPVSNKDLIEKAVD 215 Query: 110 ALGQH----------QIKWEWVKGHAGHPENERCDELARAAAM 142 + I +V GHAG+ NE D+LA A Sbjct: 216 KVATINKAYVARKMAPIIIAYVPGHAGNYGNEMADQLANKGAD 258 >UniRef50_A6LWB3 Ribonuclease H n=2 Tax=Clostridium RepID=A6LWB3_CLOB8 Length = 265 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 1/134 (0%) Query: 6 EIFTDGSCLGNPGPGGYGAILRY-RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCE 64 +I+TD S L GG+ I+ +G ++ +++ EL AA+ ALE LK+ + Sbjct: 122 KIYTDASYLEKKNHGGFAFIIEDLKGNYNLYTEKVKDIGSSQAELEAAMKALELLKDVEK 181 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGH 124 + + TDSQYVR+G+T+W+ WK +KT + +P KN++ W D A I+++WVK H Sbjct: 182 IRIITDSQYVRKGLTEWLPIWKLNDFKTINGEPAKNIEKWLDFDKACNGKYIEFQWVKAH 241 Query: 125 AGHPENERCDELAR 138 + H EN CD A+ Sbjct: 242 SNHFENSLCDMYAK 255 >UniRef50_Q2JHH6 Ribonuclease H n=2 Tax=Synechococcus RepID=Q2JHH6_SYNJB Length = 169 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 6/147 (4%) Query: 7 IFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE---H 62 IFTDG C NPGPGG+ +++ + F G +T+NRMEL I AL + + Sbjct: 20 IFTDGGCSPNPGPGGWAVVVVQDDRVVEEFWGGDPDSTSNRMELTGLIRALRYCRHTQGN 79 Query: 63 CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWV 121 + +DS Q W+ W +GW+ PV+N+DL + L + Q++ W+ Sbjct: 80 GVDTIYSDSHLCVQTYNNWMERWAAQGWRRRTG-PVENLDLVEELYQLKQECPQVRVVWI 138 Query: 122 KGHAGHPENERCDELARAAAMNPTLED 148 H G NE D L A T+ Sbjct: 139 PAHQGLRWNEYVDGLVAQARARVTVPP 165 >UniRef50_C5M9Q2 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M9Q2_CANTT Length = 283 Score = 128 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 58/166 (34%), Gaps = 28/166 (16%) Query: 6 EIFTDGSCLGNPGPG-GYGAILRYRGREKTFSAGYT----------RTTNNRMELMAAIV 54 ++ DG+C GN + GR + R TN R EL A Sbjct: 113 VVYIDGACRGNGNKYNSSAGYGVFYGRNNPRNVANPLDLVDRHNDYRPTNQRAELYALCQ 172 Query: 55 ALEALKEHCEV-------ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L + + TDS +V IT W + W GW A V NVDL Q+ Sbjct: 173 VLVNIVNDINAGNCRLKTEIRTDSMFVINSITTWCYKWCNNGWINAKGDTVANVDLLQKN 232 Query: 108 DAALGQH----------QIKWEWVKGHAGHPENERCDELARAAAMN 143 + I++ V+GH+G N+ D LA A Sbjct: 233 FNLMKSINKEYEDRGWGDIEFIHVRGHSGDYGNDEADRLANLGADR 278 >UniRef50_C5M9Q1 Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5M9Q1_CANTT Length = 284 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 60/166 (36%), Gaps = 28/166 (16%) Query: 6 EIFTDGSCLGNPGP----GGYGAILRYRGREKTFSAGY-------TRTTNNRMELMAAIV 54 ++ DG+C GN GYG + + R TN R EL A Sbjct: 114 VVYIDGACRGNGNKYNTSAGYGVYYGHNDSRNAAVSLDFVDQDNNYRPTNQRAELHALNH 173 Query: 55 ALEALKEH-------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L + + + TDS +V IT W + W GW V NVDL Q Sbjct: 174 VLLNINSDIQNDECYRKTEIRTDSMFVINSITNWCYKWCNNGWNNVKGDTVANVDLIQEN 233 Query: 108 DAALGQH----------QIKWEWVKGHAGHPENERCDELARAAAMN 143 + I+++ V+GH+G N+ D LA A N Sbjct: 234 FNLMNSINEEYEDRGWGDIEFKHVRGHSGDYGNDEADRLANIGADN 279 >UniRef50_Q034K7 RNase H with double-stranded RNA/RNA-DNA hybrid binding domain n=8 Tax=Lactobacillus RepID=Q034K7_LACC3 Length = 160 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 51/156 (32%), Positives = 71/156 (45%), Gaps = 14/156 (8%) Query: 1 MLKQVEIFTDGSCLGNPGPGG----------YGAILRYRGREKTFSAGYTRTTNNRMELM 50 M + + ++TDG G + A+L Y EK S G TNN ME+M Sbjct: 1 MAESIVLYTDGGNRNTGNQAGGSVRPTDKSAWAALLIYGDHEKMLSDGDYGRTNNYMEIM 60 Query: 51 AAIVALEALKE-HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLD 108 A I L+ALK V + +DS YV + Q W W++ W+ KPVKN +LWQ L Sbjct: 61 AVIQGLKALKRTDIPVDVYSDSAYVINTMQQRWWVKWQQNNWRN-HGKPVKNAELWQALL 119 Query: 109 AALGQHQ-IKWEWVKGHAGHPENERCDELARAAAMN 143 + + + I + VKGHA + N R D Sbjct: 120 HQVNRFETITFHKVKGHATNRNNNRVDAALNQTMDQ 155 >UniRef50_A5UB13 Ribonuclease H n=1 Tax=Haemophilus influenzae PittEE RepID=A5UB13_HAEIE Length = 117 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 58/87 (66%), Positives = 67/87 (77%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALK 60 M KQ+EIFTDGSCLGNPG GG GA+LRY+ EK S GY +TTNNRMEL A I AL LK Sbjct: 21 MQKQIEIFTDGSCLGNPGAGGIGAVLRYKQHEKMLSKGYFKTTNNRMELRAVIEALNTLK 80 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKK 87 E C + L +DSQY++ GIT+WI NWKK Sbjct: 81 EPCLITLYSDSQYMKNGITKWIFNWKK 107 >UniRef50_Q5E052 Ribonuclease H n=20 Tax=Vibrionaceae RepID=Q5E052_VIBF1 Length = 148 Score = 127 bits (320), Expect = 9e-29, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 8/147 (5%) Query: 3 KQVEIFTDGSCLGNPG---PGGYGAILRYRGRE--KTFSAGYTRTTNNR-MELMAAIVAL 56 I+ DG+ N G GG G + E T S R T+N +ELMA + L Sbjct: 4 NTYSIYIDGAAPNNQGGCMKGGIGIAVYDVNNELMDTCSITVNRATDNAELELMALVEGL 63 Query: 57 EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQI 116 E + I+ +DS++ +G +W+ WK +GW+ ADKKPV +LWQ++DA + + Sbjct: 64 EYAADGD--IIYSDSEFCVKGYNEWLDGWKAKGWRKADKKPVAYRELWQQVDALRKEKYV 121 Query: 117 KWEWVKGHAGHPENERCDELARAAAMN 143 + V+ H+G NE+ D LA AA Sbjct: 122 EVVKVRAHSGVEGNEKADSLASMAARK 148 >UniRef50_C7YSN3 Putative uncharacterized protein n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YSN3_NECH7 Length = 306 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 27/170 (15%) Query: 3 KQVEIFTDGSCLGNPG---PGGYGAILRYRGREKT-----------FSAGYTRTTNNRME 48 + IF DG+CL + G G+ + R + Y TNNR E Sbjct: 133 NEFLIFVDGACLDSGGANPRAGWAIYFKPRSGNDSGMVSGRLELVGPWGDYHEHTNNRAE 192 Query: 49 LMAAIVALEALKEHC----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLW 104 L A + AL +++++T S+YV +G T+W+ W GW+T++++ VKN DLW Sbjct: 193 LRAVLAALRFRNWPGEGFNKLVIATHSEYVAKGATEWVLRWLWNGWRTSNREAVKNRDLW 252 Query: 105 QRLDAALGQ-----HQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDT 149 Q L + ++++ + EN + +A+ AA L D Sbjct: 253 QALLGEFERLEELGLKVEFWKIP----RSENPIANRVAKQAAKEEELRDY 298 >UniRef50_C1A5K0 Ribonuclease HI n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5K0_GEMAT Length = 211 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 85/156 (54%), Gaps = 13/156 (8%) Query: 5 VEIFTDGSCLGNPG----PGGYGAILRYRGR-----EKTFSAGYTRTTNNRMELMAAIVA 55 V ++ D SCLGN PGG GA++ +R A TTNNRM L + I Sbjct: 8 VAVYADESCLGNGKSGDTPGGLGALIEFRKNDGTVLRFDLWASEPNTTNNRMALRSVIDT 67 Query: 56 LEALKEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 EA+ V+ +TDS+Y+ G++ W+ W RGW+ D V+NV+LWQ+ AA+ Sbjct: 68 FEAMSRKGNRLSVLFTTDSRYIVDGMSSWVRGWMSRGWRRKDGA-VENVELWQQAVAAIA 126 Query: 113 QHQIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 HQ +W WVKGHAGHP+NE + LA AA D Sbjct: 127 THQTQWAWVKGHAGHPQNEYANYLATRAAAVQDRSD 162 >UniRef50_A2R215 Contig An13c0090, complete genome n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R215_ASPNC Length = 278 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 16/148 (10%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT-----RTTNNRMELMAAIVAL--E 57 + I DG+C N G + Y G + + + + T+ EL A AL + Sbjct: 131 IVIAIDGACRNNGRYGARASTGVYHGHDHPLNGSASLPPNLKQTSQVAELAACERALLGD 190 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-- 115 + V++ +DS+YV +G+T+WI WK W TA PV N + ++++D+ + + Sbjct: 191 GEERLHTVVIKSDSEYVVRGMTEWIFKWKANDWTTAKGLPVANQEHFKKIDSLVESLENE 250 Query: 116 ---IKWEWVKGHAGHPENERCDELARAA 140 +++ V N+ D LA +A Sbjct: 251 QVPVQFWQVP----REFNQEADRLAASA 274 >UniRef50_Q54222 Putative RNaseH n=1 Tax=Streptomyces galbus RepID=Q54222_STRGB Length = 133 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGRE---KTFSAGYTRTTNNRMELMAAIVALE 57 M ++V DG+ GNPGP G+ ++ + + R TNN EL A L Sbjct: 1 MRERVVAACDGASKGNPGPAGWAWVVSDDDERTPARWEAGPLGRATNNVAELTALERLLT 60 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLW 104 A+ + + DSQY + +T W+ WK+ GWKTA KPV N DL Sbjct: 61 AVDPDVPLEIRMDSQYAMKAVTTWLPGWKRNGWKTAAGKPVANQDLV 107 >UniRef50_C6VIU9 Ribonuclease H (Putative) n=4 Tax=Lactobacillus RepID=C6VIU9_LACPJ Length = 294 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 17/156 (10%) Query: 5 VEIFTDGSCLGNPGPGG----------YGAILRYRGREKTFSAGYTRTTNNRMELMAAIV 54 + ++TDG G + + + T SAG TNNRME+MA + Sbjct: 69 ITVYTDGGSRNTGNVAGQHVHQDDKAAWAYRIEMPDQLVTDSAGEWGATNNRMEIMAFLR 128 Query: 55 ALEALKEHCE----VILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 ALE L++ + ++ DSQYV +T+ W+ WK+RGWK ++ P+ N +LW+ +D Sbjct: 129 ALEQLQQLGQTKTGILFVLDSQYVLNAVTKGWLAGWKRRGWKRSNG-PLVNAELWREVDR 187 Query: 110 ALGQHQ-IKWEWVKGHAGHPENERCDELARAAAMNP 144 L + + W KGHA + N D L Sbjct: 188 LLPAFTALNYRWTKGHATNQGNVFVDHLLNQTMDQM 223 >UniRef50_Q7V385 Possible ribonuclease HI n=7 Tax=Prochlorococcus marinus RepID=Q7V385_PROMP Length = 240 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 66/146 (45%), Positives = 90/146 (61%), Gaps = 5/146 (3%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGR-EKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61 +E TDG+C GNPGPGG+G ++ + E TTNNRMEL AAI LE LK+ Sbjct: 9 IEAATDGACSGNPGPGGWGGLIIFNDNSELEIGGSEENTTNNRMELTAAIKTLEKLKDFQ 68 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 L TDS+YV +G T+WI NWK+ GWKT+ K V+N+DLWQ++D + + E+ Sbjct: 69 LKENFKLRTDSKYVIEGYTKWIINWKRNGWKTSAGKSVQNLDLWQKIDNLRIKGLV-MEF 127 Query: 121 VKGHAGHPENERCDELARAAAMNPTL 146 VKGH+G +NER D +A + + L Sbjct: 128 VKGHSGDKQNERVDLIATSYSKGIPL 153 >UniRef50_A6GJD7 DNA polymerase III, epsilon subunit n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GJD7_9DELT Length = 234 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 17/144 (11%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 + I TDG+C GNPGP G G + S TNN EL A + ALEA+ + Sbjct: 91 DTIIIHTDGACSGNPGPAGLGVHIVRPDSITEISEFIGDATNNVAELKAILRALEAITDE 150 Query: 63 CE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD-AALGQHQIKW 118 + + L TDS + + I WK + KNV L +++ I+ Sbjct: 151 EKERRIHLYTDSGWSLGVL---IGGWKAK----------KNVALIEKIKTKLPELPNIEL 197 Query: 119 EWVKGHAGHPENERCDELARAAAM 142 VKGHAG NE D LA A Sbjct: 198 LKVKGHAGLEGNEEADALATKAVR 221 >UniRef50_B9JEK9 Putative uncharacterized protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JEK9_AGRRK Length = 165 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 11/147 (7%) Query: 5 VEIFTDGSCLGNPGPGGYG-AILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 61 + +FTDGS GG+ A+ R + RT NN MEL+A + A E L + Sbjct: 14 LHVFTDGSFDPVSKTGGWAFAVFRGSAQVFAAFGSEARTANNAMELLAILQACEWLADNA 73 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTA------DKKPVKNVDLWQRLDAAL-GQ 113 E ++ TDS Y G +W H W+ W+ + V + W+ +D L Sbjct: 74 AGEEAVIHTDSAYAVNGCIRWRHIWRSNKWRKRTPNGQGRSRSVADAAYWRAIDVLLNQN 133 Query: 114 HQIKWEWVKGHAGHPENERCDELARAA 140 IK +W KGH G NE D LA+ Sbjct: 134 PTIKVKWCKGHVGVEGNEVADALAQRG 160 >UniRef50_C9ZTC3 Ribonuclease H1 n=3 Tax=Trypanosoma brucei RepID=C9ZTC3_TRYBG Length = 301 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 67/181 (37%), Gaps = 38/181 (20%) Query: 2 LKQVEIFTDGSCLGNP------GPGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAA 52 + V ++ DG+C N P G + F TN R EL A Sbjct: 119 REAVVVYVDGACRNNGSRSRERRPRAGFGGFYGDGDSRNFKFPLPAHEPQTNQRAELSAL 178 Query: 53 IVALEALKEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA 109 I L + + + +DS+Y G+ ++H W++ G+KTA V N+DLW + Sbjct: 179 IHVLRVALDSHPCYNLCVYSDSKYTVMGVNSYLHRWERNGFKTAGGGDVANIDLWSQFTK 238 Query: 110 ALGQH--------------------------QIKWEWVKGHAGHPENERCDELARAAAMN 143 +H ++ + V GHAG NE D LA A + Sbjct: 239 LRNRHLSRCAERFTMEFRFKASLAAIAARAVALQLKHVPGHAGVYGNEMADRLAVEACES 298 Query: 144 P 144 P Sbjct: 299 P 299 >UniRef50_A8ZTA6 Ribonuclease H n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTA6_DESOH Length = 230 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 52/143 (36%), Positives = 65/143 (45%), Gaps = 15/143 (10%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH 62 +++FTDG+ GNPGP G G +L Y +KT S TNN EL A AL +K Sbjct: 98 DAIQVFTDGAASGNPGPAGIGVLLIYGNSQKTISRYIGHATNNIAELKAIEAALLEIKNK 157 Query: 63 C-EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEW 120 V L TDS Y +T WK + KNV+L + + +K Sbjct: 158 KLPVRLFTDSAYSLGALT---LGWKAQ----------KNVELIAGIQKLMRTFSDLKIFK 204 Query: 121 VKGHAGHPENERCDELARAAAMN 143 VKGHAG ENE D LA A Sbjct: 205 VKGHAGMAENETADRLATEAIQK 227 >UniRef50_Q1QJH4 Ribonuclease H n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QJH4_NITHX Length = 128 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 1/115 (0%) Query: 29 RGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKR 88 G TTNNRM++ AAIVAL L C V + TDSQY+++G+T W+ W ++ Sbjct: 9 GNPPINLWGGGRDTTNNRMKMTAAIVALTVLPPACGVTIYTDSQYLQKGMTLWMAGWTRK 68 Query: 89 GWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 ++ D V N DLW+ LDA + W W++GH GH NER D LA Sbjct: 69 DFRRKDG-LVPNADLWRTLDALASGRTVTWSWLRGHNGHAGNERADGLASEGRRK 122 >UniRef50_Q07762 Ribonuclease H n=4 Tax=Trypanosomatidae RepID=RNH1_CRIFA Length = 494 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 72/218 (33%), Gaps = 75/218 (34%) Query: 6 EIFTDGSCLGNPGP---GGYGAILRYRGREKTFSAGYTRT---TNNRMELMAAIVAL--- 56 ++ DG+C N P GYG + FS T TNNR E+ A I + Sbjct: 277 VVYVDGACSHNGTPKARAGYGGFYGSTSDSRNFSLPVPITEAQTNNRGEMRAVIHCIVQG 336 Query: 57 ------------------------EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKT 92 E + +++ TDS+YV G+T++ W G+K Sbjct: 337 FVDAGVPPAALGTSHCVEPDWELSELPQPLRRLVIYTDSRYVIDGLTRYALKWVANGFKL 396 Query: 93 ADKKPVKNVDLWQRLDAALGQHQ------------------------------------- 115 A K+PV N DLW++L + Sbjct: 397 ASKEPVLNQDLWRQLIRLRDAYNTRYAEQQHWAAATCSHASTRVPAASQSKRFHTHNTRN 456 Query: 116 -----IKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 I+ VKGH+ NE D LA A A + Sbjct: 457 DETEGIELRHVKGHSNDYGNEMADVLAVAGARMHGTSE 494 >UniRef50_D0NEW7 Ribonuclease, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NEW7_PHYIN Length = 317 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 3 KQVEIFTDGSCLGNPGP---GGYGAILRYRGR-EKTFSAGYTRTTNNRMELMAAIVALEA 58 K + F DGS L N GY I + + R TNNR E MAA+ A++ Sbjct: 159 KTLVAFCDGSALENGRRKCRAGYACIFPHCEQWNVAKQLVEDRATNNRAEYMAALEAMKR 218 Query: 59 LK-----EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ 113 + + +DS + + +T+W+ W+K W +D PV+N DL + L A G Sbjct: 219 ANVEDPERSRMLYIFSDSMLLIRSMTEWVGTWQKNNWNKSDGTPVQNRDLLELLVAEKGS 278 Query: 114 HQIKWEWVKGHA-----GHPENERCDELARAAAMN 143 +I+W VK H N+ D AR AA++ Sbjct: 279 RRIRWTHVKAHTRKQDWRSKWNDVADNAARNAALS 313 >UniRef50_UPI000179CCC3 Protease n=2 Tax=Bos taurus RepID=UPI000179CCC3 Length = 1092 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 8/152 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE 61 +EIFTDGS G G ++ K S T+ EL+A ALE L + Sbjct: 552 NPDMEIFTDGSSFVQDGKHKAGYVVTAEQVLKAKSLPQG-TSAQLAELVALTRALE-LSK 609 Query: 62 HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD-AALGQHQIKWEW 120 V + TDS+Y + WK+R +KTA +P+K+ +RL A ++ Sbjct: 610 GQRVNIYTDSKYAYLTLHAHAAIWKERHFKTATGEPIKHFREIERLLTAIYCPKEVAVMH 669 Query: 121 VKGHAGH-----PENERCDELARAAAMNPTLE 147 KGH+ N D AR AA+ T Sbjct: 670 CKGHSRDGSKIAEGNNLADCQARKAALYETPS 701 >UniRef50_A5DAG3 Putative uncharacterized protein n=1 Tax=Pichia guilliermondii RepID=A5DAG3_PICGU Length = 152 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 59/145 (40%), Gaps = 21/145 (14%) Query: 20 GGYGAILRYRGREKTF----SAGYTRTTNNRMELMAAIVALEALKE-------HCEVILS 68 GYG S T+ R EL A A+ + + E ++ Sbjct: 7 SGYGVFYGDGDERNVAVALSSVDDIPGTSQRAELHALDHAVSNIADFLDEYNPDKEYVIH 66 Query: 69 TDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----------IKW 118 TDSQYV + T WI WK GW T+ K V N DL +R+ + L + +K Sbjct: 67 TDSQYVIKATTVWIKKWKSNGWTTSYGKSVANQDLIKRIFSNLNRINKELEDNGFSAVKL 126 Query: 119 EWVKGHAGHPENERCDELARAAAMN 143 E V GH+G NE D+LA A Sbjct: 127 EHVAGHSGDYGNEMADQLANEGADM 151 >UniRef50_A7EQD5 Putative uncharacterized protein n=2 Tax=Sclerotiniaceae RepID=A7EQD5_SCLS1 Length = 319 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 33/173 (19%) Query: 4 QVEIFTDGSCLGNPG---PGGYGAI------LRYRGREKTFSAGYTRTTNNRMELMAAIV 54 ++ I+TDG+CL N GG G I +++R + T+NR EL A I Sbjct: 141 EILIYTDGACLSNGLSNLRGGCGFIASPTHKVKFRLENTGPTDEPHPQTSNRAELRAVIA 200 Query: 55 ALEA-------LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 AL+ L ++++TDS+YV G T+ I W RGW+T+ KPVKN DLW++L Sbjct: 201 ALQYHYWQGDCLGSWTRLVIATDSEYVVLGATERIRGWITRGWRTSAGKPVKNQDLWKKL 260 Query: 108 DAALGQHQ-------------IKWEWVKGHAGHPENERCDELARAAAMNPTLE 147 + + + + + N+ D A+ A ++ Sbjct: 261 IHQIQKLDEPSRCIYPPHGTSVSFWRIP----REWNQDADVEAKKGAELEDVQ 309 >UniRef50_A8XYS2 C. briggsae CBR-RNH-1.3 protein n=2 Tax=Caenorhabditis briggsae RepID=A8XYS2_CAEBR Length = 150 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 18/144 (12%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE--HCE 64 I TDG+ N R +++ S+ Y TNNR EL A A + Sbjct: 13 INTDGATSNN-----------DRNLDRSGSSAYGNQTNNRYELEAIREATRIASQVPDRH 61 Query: 65 VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-----QHQIKWE 119 + ++TDSQY + W NW++ GW+T+ +PVKN +L + +D + ++ + Sbjct: 62 ISINTDSQYAVDSLNTWKSNWEQNGWRTSRGEPVKNQELIRDIDRNINNLRDSGKKVTLK 121 Query: 120 WVKGHAGHPENERCDELARAAAMN 143 + GH+ N D LAR AA + Sbjct: 122 HISGHSNDYHNTEADRLARQAAAS 145 >UniRef50_Q5BXL7 SJCHGC09332 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5BXL7_SCHJA Length = 230 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 10/140 (7%) Query: 15 GNPGPG---GYGAILRYRGREKTFSAGY---TRTTNNRMELMAAIVALEALKEHC--EVI 66 G+ G Y G ++ TNNR E+ A I A++ + Sbjct: 87 GDGGGASMIAMAGYGVYWGPSHPWNVSERLEGEQTNNRAEIEAVICAIKQAHASGITHLG 146 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG--QHQIKWEWVKGH 124 + TDS++ + T+W W + WK A+ + K + +RL + +I W V+GH Sbjct: 147 IVTDSKFTQNCATEWGKRWARNSWKLANGEDAKLKEPVKRLLELIAESGIEITWHHVRGH 206 Query: 125 AGHPENERCDELARAAAMNP 144 G NE D LA A P Sbjct: 207 KGVHGNEEADCLANIGADKP 226 >UniRef50_B8MPL2 Ribonuclease H1, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MPL2_TALSN Length = 346 Score = 118 bits (297), Expect = 4e-26, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 48/189 (25%) Query: 4 QVEIFTDGSCLGNPG---PGGYGAILRY------RGREKTFS------------------ 36 Q I+TDG+CL N G G R GR Sbjct: 154 QFLIYTDGACLDNGGLSPQAGCAFYFRPPAEDTQDGRRHNRRRPGTMEFPPPSQGYTSFH 213 Query: 37 -------AGYTRTTNNRMELMAAIVALEALKEHCE----VILSTDSQYVRQGITQWIHNW 85 + T+NR EL A I AL E ++++TDS+YV +G T W+ W Sbjct: 214 LEKRGPFGDPSSQTSNRAELRAVIGALRFRVWQGEGFRTLVIATDSEYVVEGATNWVKGW 273 Query: 86 KKRGWKTADKKPVKNVDLWQRLDAALGQH-----QIKWEWVKGHAGHPENERCDELARAA 140 + W+T PVKN DLW+ L + +H ++ + + N D+ A+ A Sbjct: 274 LRNNWRTRSG-PVKNKDLWEALLGEIERHHDKGLKVLFWRIP----RELNMVADQKAKIA 328 Query: 141 AMNPTLEDT 149 A ++ Sbjct: 329 AQEEPASES 337 >UniRef50_C2KDF2 Ribonuclease n=16 Tax=Lactobacillus RepID=C2KDF2_9LACO Length = 267 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 17/153 (11%) Query: 8 FTDGSCLGNP----------GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 +TDG + ++ + ++ S G TNN+ME A I AL+ Sbjct: 115 YTDGGTRNTGVYKGGHVKKTDKAAWAYLIEWDDQKVHGSGGEYGATNNKMEQTALINALK 174 Query: 58 ALKE----HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALG 112 L E ++ DSQYV I + W+ WKKRGW+ + P+ NV WQ LD L Sbjct: 175 KLLELGFNDKHLLFVLDSQYVLNAINKHWLQGWKKRGWRRSSG-PLANVAEWQELDRLLK 233 Query: 113 QHQI-KWEWVKGHAGHPENERCDELARAAAMNP 144 + +EW KGHA + NE D Sbjct: 234 EFPDSTFEWTKGHANNRGNEFVDHELNRYMDQK 266 >UniRef50_Q8SD07 PHIKZ155 n=2 Tax=phiKZ-like viruses RepID=Q8SD07_9CAUD Length = 482 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 41/182 (22%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT------------------ 42 M + ++TDGS G G+G S T+ Sbjct: 1 MSDGMVLYTDGSFR--QGKAGWGIHGYTYENVAMKSKAATKQQPTAKGYLDVGADETCTV 58 Query: 43 --------------TNNRMELMAAIVALEALKEH--CEVILSTDSQYVRQGITQWIHNWK 86 TNN EL AAI A + E + + DS+YVR+G+T ++ W Sbjct: 59 LNYIDAFGSVTNNPTNNTGELTAAIEAFKIAHEADAPRLTMLMDSEYVRKGMTAYLPKWI 118 Query: 87 KRGWKTADKKPVKNVDLWQRLDAALGQHQ-----IKWEWVKGHAGHPENERCDELARAAA 141 K W +D PV N DLW+++ + + + +WV+GH G NE+ D A+ + Sbjct: 119 KSNWIKSDGTPVANQDLWKQMVELKAKWEETNKPLSIQWVRGHNGDIGNEKADANAKLGS 178 Query: 142 MN 143 Sbjct: 179 GQ 180 >UniRef50_Q9TTC1 Integrase n=20 Tax=root RepID=POL_KORV Length = 1127 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 7/146 (4%) Query: 7 IFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVI 66 +TDGS G GA + R S T+ + EL+A AL E + Sbjct: 599 WYTDGSSFIMDGRRQAGAAIVDNKRTVWASNLPEGTSAQKAELIALTQALRLA-EGKSIN 657 Query: 67 LSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWEWVKGHA 125 + TDS+Y +K+RG T+ K +KN + L A+ + + GH Sbjct: 658 IYTDSRYAFATAHVHGAIYKQRGLLTSAGKDIKNKEEILALLEAIHLPKRVAIIHCPGHQ 717 Query: 126 --GHP---ENERCDELARAAAMNPTL 146 P N + DE A+ AA + + Sbjct: 718 RGTDPVATGNRKADEAAKQAAQSTRI 743 >UniRef50_Q5UPY1 Probable ribonuclease H n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=RNH_MIMIV Length = 229 Score = 117 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 14/149 (9%) Query: 15 GNPGPGGYGAILRYR--GREKTFSAGYTRT--TNNRMELMAAIVALEALKEH-----CEV 65 GN G G I + G + S + + TN R EL A + A++ + ++ C+V Sbjct: 23 GNGRVGASGGIGIHFPNGELQDISLEFDKGCCTNQRTELYAILYAIQYIDDNFDLNKCKV 82 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHA 125 ++ TDS Y IT+W + W +P+ N + Q + I +EWV+ H Sbjct: 83 MIKTDSTYSVNSITKWAEGHSRNDWCKRTGEPIANREFIQEIYEYYQNFNIDFEWVEAHT 142 Query: 126 G-----HPENERCDELARAAAMNPTLEDT 149 G N + D LA +AA + Sbjct: 143 GQTDSESIANAQADFLANSAAKRAARDKK 171 >UniRef50_Q046W4 RNase HI n=5 Tax=Lactobacillus RepID=Q046W4_LACGA Length = 251 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 17/155 (10%) Query: 6 EIFTDGSCLGNP----------GPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVA 55 I+TDG + ++ ++G S G TNN+MEL+ I A Sbjct: 97 TIYTDGGSRNTGVHKGGHVNKTDKAAWAYLIEWQGGRTYGSGGEFGATNNKMELLGLINA 156 Query: 56 LEALKE----HCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 LE L E ++ DSQYV GI + WI WKKRGWK A+ P+ N W++LD+ Sbjct: 157 LEKLLELKFNDKHLLFVLDSQYVLNGINKHWIEGWKKRGWKRANG-PLINASEWKKLDSL 215 Query: 111 LGQH-QIKWEWVKGHAGHPENERCDELARAAAMNP 144 LG + W KGHA + N D Sbjct: 216 LGHFSDSTFSWTKGHADNEGNVFVDHELNRYMDKM 250 >UniRef50_Q6FPF4 Similar to uniprot|Q04740 Saccharomyces cerevisiae YMR234w RNH1 ribonuclease H n=1 Tax=Candida glabrata RepID=Q6FPF4_CANGA Length = 403 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 31/170 (18%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG----YTRTTNNRMELMAAIVALE 57 +++V + DGS LGN Y +++ TNNR E+MA AL+ Sbjct: 239 VQKVTTYCDGSSLGNGTHASKAGYGVYFPHNPSYNISKPLLIGPQTNNRAEIMAVSEALD 298 Query: 58 ALKEHC-------EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 + E + TDS+YV + + ++ ++ + + + N DL + L Sbjct: 299 TIWNDLTCHGNKVEYTIKTDSEYVSKLLNDRYSSYTEK-----EMETLPNKDLVKPLIEK 353 Query: 111 LGQHQ---------------IKWEWVKGHAGHPENERCDELARAAAMNPT 145 + + +K EWVKGHAG P NE D LAR A Sbjct: 354 YVKVKTYYDVNKDKFSNDKGLKIEWVKGHAGEPGNEMADLLARRGADQRN 403 >UniRef50_A8NLY2 Putative uncharacterized protein n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NLY2_COPC7 Length = 738 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYG----AILRYRGREKTFSAGYTRTTNNRMELMAAIVALE 57 ++V ++TDGSC N R + +NN EL A + A++ Sbjct: 303 RQEVSVYTDGSCSANGTASARAGSGIWYGPEDNRNRALRLPDKLASNNAGELAAILAAIQ 362 Query: 58 ALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIK 117 + + + +DS+Y IT+ I W G+ KP+ + L+ L A I Sbjct: 363 DNQSAKNLHVISDSKYAIDAITKHIGRWADEGFTRVKNKPIVHA-LFGELVTASSA--IT 419 Query: 118 WEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151 E VKGH+G N+ D LA A ++ Sbjct: 420 LEKVKGHSGDAGNDGADRLA--ATDKADADELDL 451 >UniRef50_Q9XVE6 Protein C04F12.9, confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q9XVE6_CAEEL Length = 139 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 11/132 (8%) Query: 7 IFTDGSCLGNPGPGGYGAILRY--RGREKTFSAGYTR--TTNNRMELMAAIVALEALKE- 61 +TDGS LGN G G + K S Y TNNR EL A A + ++ Sbjct: 5 FYTDGSALGNGQQGSRGGYGVHVPSDTSKNVSGSYPHGPQTNNRYELEAIKHATQMARDV 64 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ----- 115 V + TDS+ + +T+W NWK G+KT+ + VKN DL + +D + + Sbjct: 65 PDSHVRIHTDSKNAKDSVTKWNDNWKSNGYKTSSGQDVKNQDLIRDIDRNVQALKHSGKT 124 Query: 116 IKWEWVKGHAGH 127 +++E V+GH+ Sbjct: 125 VEFEHVRGHSNR 136 >UniRef50_C5R9S8 Ribonuclease H n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R9S8_WEIPA Length = 232 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 18/158 (11%) Query: 3 KQVEIFTDGSCLGNPG----------PGGYGAILRYRGREKTF----SAGYTRTTNNRME 48 Q IFTDG G+ + + S TNN ME Sbjct: 74 NQYYIFTDGGSRNTGNTAGGHVKATDKAGWAIAIYHGSNLNEPVYTDSGADWGRTNNEME 133 Query: 49 LMAAIVAL-EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 ++A I AL + K V + +DS+YV +T W++NW GW+ + + + N+ WQ++ Sbjct: 134 MLALINALLQTAKVSTPVTIVSDSKYVLDTVTNWMYNWAANGWRKSSGE-IANLKAWQQI 192 Query: 108 DAALGQH--QIKWEWVKGHAGHPENERCDELARAAAMN 143 A + ++ + WVKGHA N D L A Sbjct: 193 YALIKPLAARLSFIWVKGHATSHGNITVDHLLNDAMDQ 230 >UniRef50_A1D376 Reverse transcriptase, RNaseH, putative n=3 Tax=Trichocomaceae RepID=A1D376_NEOFI Length = 221 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 25/159 (15%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-----AGYTRTTNNRMELMAAIVAL 56 + + DG+C N G + + G + G TN EL A + AL Sbjct: 51 SDHIVVAVDGACSKNGKDGARSSYGVFWGHNNVLNTAVPVEGEGHHTNQVAELRACMRAL 110 Query: 57 ------EALKEH-----CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 ++L E V++ +DS+Y+ +G+T+W+ WK+ GWK + V N + ++ Sbjct: 111 LDVVHVKSLFEDQGITLSAVVIKSDSEYLVRGVTEWLPKWKRNGWKNSRGLDVANWEHFK 170 Query: 106 RLDAA-----LGQHQIKWEWVKGHAGHPENERCDELARA 139 ++ + +K+ V N D +A+A Sbjct: 171 AIERLTEDLERQKLILKFWHVP----RRNNRDADTMAKA 205 >UniRef50_Q5MCR4 Ribonuclease HI n=1 Tax=Leishmania major RepID=Q5MCR4_LEIMA Length = 381 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 70/215 (32%), Gaps = 78/215 (36%) Query: 6 EIFTDGSCLGNPG---PGGYGAILRYRGREKTFSAGYT---RTTNNRMELMAAIVAL--- 56 ++ DG+C N GYG + FS TNNR E+ A I A+ Sbjct: 163 VVYVDGACSHNGTSQARAGYGGYYGSMSDPRNFSCPVPLTESQTNNRGEVRAVIHAIVQA 222 Query: 57 -------------------------EALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWK 91 + + +I+ TDS+YV G+T++ W + G+ Sbjct: 223 FVDAGAPADALEATHLVDPSAWRLVDLTRPLPHLIIYTDSRYVIDGLTRYAKKWVQNGFV 282 Query: 92 TADKKPVKNVDLWQRLDAALGQHQ------------------------------------ 115 + +PV+N DLW++L ++ Sbjct: 283 LSTNEPVQNQDLWRQLIRLRDRYNTLYARQQHDQQRACQWGDGHHSEADLAQLVRYTCQN 342 Query: 116 --------IKWEWVKGHAGHPENERCDELARAAAM 142 ++ V+GH+ NE D LA + Sbjct: 343 ARNDKSEGVELIHVRGHSKVHGNEMADSLAVMGSR 377 >UniRef50_UPI000194C160 PREDICTED: similar to polyprotein n=12 Tax=Taeniopygia guttata RepID=UPI000194C160 Length = 1542 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 58/157 (36%), Gaps = 13/157 (8%) Query: 7 IFTDGSCL--GNPGPGGYGAILRYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKEHC 63 FTDGS GY +E S T+ + E+ A ALE K Sbjct: 1005 WFTDGSSYVVNGKRHAGYAVTTC---KEVIESGPLPTNTSAQKAEIFALTRALELAK-GK 1060 Query: 64 EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVK 122 E+ + TDS+Y + WK+RG + K +K+ RL A+ ++ +K Sbjct: 1061 EINIYTDSKYAFGIVHAHGAIWKERGLLNSQGKNIKHASEILRLLEAVQLPEKVAIMHIK 1120 Query: 123 GHAGH-----PENERCDELARAAAMNPTLEDTGYQVE 154 H NE D A+ AA + + + Sbjct: 1121 AHQRINSELEEGNELADRKAKEAARMEVITEVALIPD 1157 >UniRef50_A9CET6 Ribonuclease H n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CET6_AGRT5 Length = 157 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 11/149 (7%) Query: 1 MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFS-AGYTRTTNNRMELMAAIVALEAL 59 M + IFTDGS GG+ ++ G + + +NN E++A + A+ + Sbjct: 1 MSDALHIFTDGSFDDATRSGGWAFVVHEGGDQVHSATGKAAGASNNSFEVLAVLNAMSWV 60 Query: 60 KEHCE---VILSTDSQYVRQGITQWIHNWKKRGWKT------ADKKPVKNVDLWQRLDAA 110 V L TD+ +V +G ++ W+ GWK A ++P+ + ++WQ+LD Sbjct: 61 AAEAPTRDVTLWTDAVHVIEGCRRYRAIWRNNGWKRITPNQRARRRPIPDSEIWQQLDKL 120 Query: 111 LGQHQ-IKWEWVKGHAGHPENERCDELAR 138 L +H + EW KGH+G NE D LAR Sbjct: 121 LERHPHVAVEWCKGHSGLVGNEHADALAR 149 >UniRef50_Q6CDS8 YALI0B21494p n=1 Tax=Yarrowia lipolytica RepID=Q6CDS8_YARLI Length = 483 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 17/153 (11%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHC- 63 + + TDG+C G G G + + T R EL A AL + H Sbjct: 309 MTVHTDGACQGE--KAGAGVWFQDGSEFNFSGPVEGKQTRERAELYAVFQALRLIFTHRV 366 Query: 64 ----EVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ------ 113 + TDSQY IT+ W+K G+ + PV+N DL + + Sbjct: 367 YDAYRWEVVTDSQYAIDCITKKGDKWEKNGYVDSKGCPVENRDLVVIIRYFARESEKLSG 426 Query: 114 --HQIKWEWVKGHAGHPENERCDELARAAAMNP 144 HQI ++ H+ + NE + LA Sbjct: 427 CYHQIIFKHT--HSRNHGNESANRLATKGIDGK 457 >UniRef50_A5D9X9 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5D9X9_PICGU Length = 264 Score = 114 bits (286), Expect = 8e-25, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 63/164 (38%), Gaps = 25/164 (15%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTF-----SAGYTRTTNNRMELMAAIVALEALK 60 +IF DG+ G+ GYG + N R EL A I ++ Sbjct: 60 KIFIDGAFQGDQ--CGYGVWYGDDDPRNAAVPLFQAKEELPLNNQRAELRAMIHVFRNIQ 117 Query: 61 EH---------CEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL 111 + E ++ TDSQ + +T W WKK GWKT + + N DL L Sbjct: 118 QEIESNNGIPLKEYVILTDSQATIKALTIWSVKWKKNGWKTTKGEIIANKDLISEAVELL 177 Query: 112 GQ---------HQIKWEWVKGHAGHPENERCDELARAAAMNPTL 146 ++ E V GHAG NE D+LA AA T+ Sbjct: 178 ESLEQYYRTSDLRLAIEHVYGHAGVHGNEEADKLATFAASLTTI 221 >UniRef50_Q04740 Ribonuclease H n=6 Tax=Saccharomycetaceae RepID=RNH1_YEAST Length = 348 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 60/165 (36%), Gaps = 25/165 (15%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYT----RTTNNRMELMAAIVALE 57 K + ++ DGS GN Y + TNNR E+ A AL+ Sbjct: 185 NKSMNVYCDGSSFGNGTSSSRAGYGAYFEGAPEENISEPLLSGAQTNNRAEIEAVSEALK 244 Query: 58 AL-------KEHCEVILSTDSQYVRQGITQWIHNWKKRGWK------------TADKKPV 98 + KE + TDS+YV + + + + + K Sbjct: 245 KIWEKLTNEKEKVNYQIKTDSEYVTKLLNDRYMTYDNKKLEGLPNSDLIVPLVQRFVKVK 304 Query: 99 KNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 K +L + G+ QI+ WVKGH G P NE D LA+ A Sbjct: 305 KYYELNKECFKNNGKFQIE--WVKGHDGDPGNEMADFLAKKGASR 347 >UniRef50_B5ZRJ7 Ribonuclease H n=6 Tax=Rhizobium RepID=B5ZRJ7_RHILW Length = 177 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 11/147 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTF-SAGYTRTTNNRMELMAAIVALEALKE-- 61 + +F DG G GG+ + E G ++NN MEL A + A + Sbjct: 24 LHLFADGCYEPGSGHGGWSFVAYRDAVEIASGFGGAEDSSNNSMELTAVLRAAMWINSQT 83 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTAD------KKPVKNVDLWQRLDAALGQH 114 I+ +DS Y +G H WK GWK + ++ + N +LW+ +D L Q+ Sbjct: 84 AGEAAIIWSDSIYAVKGCNSRRHIWKNNGWKKSSPNGQGRRRTIDNAELWKAVDLQLSQN 143 Query: 115 Q-IKWEWVKGHAGHPENERCDELARAA 140 + W KGH+G NER D LA Sbjct: 144 ALVTIAWCKGHSGVVGNERADALADRG 170 >UniRef50_B6B8N1 RNA-directed DNA polymerase n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8N1_9RHOB Length = 580 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 58/143 (40%), Gaps = 22/143 (15%) Query: 7 IFTDGSCLGNPGP-------GGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 I TDGS G G + I ++ S TTNNRMEL A I A++++ Sbjct: 439 ISTDGSTAGKSNRDTGLAPVGAWAYI--NHQTKEERSGSDRGTTNNRMELKAVIQAIDSI 496 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWE 119 VI+ +DS+YV + N DLWQ +I+ Sbjct: 497 PTGGAVIIRSDSKYVSNAVNN-------------GSIVTSNHDLWQEFVDVSKGREIRVV 543 Query: 120 WVKGHAGHPENERCDELARAAAM 142 WVKGH G NE D LAR A Sbjct: 544 WVKGHDGDAFNEAADNLARQTAE 566 >UniRef50_D0NEW3 Putative uncharacterized protein n=2 Tax=Phytophthora infestans T30-4 RepID=D0NEW3_PHYIN Length = 281 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 61/150 (40%), Gaps = 16/150 (10%) Query: 3 KQVEIFTDGSCLGNPGP---GGYGAILRYRG-REKTFSAGYTRTTNNRMELMAAIVALEA 58 + F DGS L N Y + + + TNNR E MAA+ AL+ Sbjct: 133 DSMVAFCDGSALRNGQRDCDAAYARVFPHDQASNVVRTLNGPWATNNRAEYMAALAALQW 192 Query: 59 LKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKW 118 ++ D + +T WI+ W+ GW T + VKN D+ +L G ++ W Sbjct: 193 ARDE-------DPSMLINSMTNWIYKWQNNGWTTQNGTEVKNRDILGQLLDEQGNREVIW 245 Query: 119 EWVKGHAGH-----PENERCDELARAAAMN 143 V+ H G+ N+ D AR AA Sbjct: 246 RHVRAHTGNKDWESYWNDIADTKARQAAEK 275 >UniRef50_UPI0000F2E7D9 PREDICTED: similar to polyprotein n=5 Tax=Monodelphis domestica RepID=UPI0000F2E7D9 Length = 1399 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 54/152 (35%), Gaps = 8/152 (5%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT-TNNRMELMAAIVALEALK 60 +TDGSCL N E + + + EL A A E K Sbjct: 837 NPDFSWYTDGSCLRNESGILVAGYAITTTAEVIEAGHLPSAISAQQAELEAVTRACELAK 896 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQ-IKWE 119 V + TDS+Y + W+ RG+ T+ P+KN +RL L + I Sbjct: 897 -GKRVNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVRRLLEVLLLPKAIAII 955 Query: 120 WVKGHAGH-----PENERCDELARAAAMNPTL 146 + GH+ N D+ A+ AA Sbjct: 956 KIPGHSRENSPHAKGNALADQYAKEAARQVPT 987 >UniRef50_C5DHG7 KLTH0E04202p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5DHG7_LACTC Length = 381 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 20/163 (12%) Query: 1 MLKQVEIFTDGSCLGNPGP---GGYGAIL-RYRGREKTFSAGYTRTTNNRMELMAAIVAL 56 +++ ++ DGS L N GYG + G + TNNR E+ A AL Sbjct: 218 VVQDCNVYCDGSALSNGTRSSRAGYGVYFEQDGGNNISEPLLEGAQTNNRAEIQAVSSAL 277 Query: 57 EAL-------KEHCEVILSTDSQYVRQGITQWIHNW---KKRGWKTADK------KPVKN 100 + + K++ + TDS+YV + + + K +D K VK Sbjct: 278 DQIWTNLTANKKNLRYQIKTDSEYVAKLLNDRYMGYSVQKLEQLPNSDLIAPLVQKFVKV 337 Query: 101 VDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMN 143 ++ + G + EWV+GHAG NE+ DELAR A Sbjct: 338 KKFYEINEEVFGSSKFHIEWVRGHAGEAGNEKADELARLGASK 380 >UniRef50_UPI000155BCE8 PREDICTED: similar to pol protein n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BCE8 Length = 624 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 56/155 (36%), Gaps = 12/155 (7%) Query: 2 LKQVEIFTDGSC--LGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 + +FTDGS G + E ++A + + EL A I A Sbjct: 408 NPDLILFTDGSSYIFEGCRHTGAAVVTLN---ETLWAASLNQGSAQVAELRALIQACTQA 464 Query: 60 KEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKW 118 + + + TDS+Y WK+RG+ TA + N DL Q+L A+ QI Sbjct: 465 -QGKSINIYTDSRYAFGVCHATGALWKQRGFLTASGGRIANADLIQQLLDAIHLPSQIAV 523 Query: 119 EWVKGHAG-----HPENERCDELARAAAMNPTLED 148 H N R D AR A + E Sbjct: 524 IHCPAHIRGKDPISRGNARADHEARQAVLRLPREP 558 >UniRef50_UPI0000F2BD89 PREDICTED: similar to polyprotein n=1 Tax=Monodelphis domestica RepID=UPI0000F2BD89 Length = 1339 Score = 112 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 56/148 (37%), Gaps = 4/148 (2%) Query: 2 LKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRT-TNNRMELMAAIVALEALK 60 +TDGSCL N E + + + EL A A E K Sbjct: 816 NPDFSWYTDGSCLQNESGILVARYAITTTAEVIEAGHLPSAISAQQAELEAVTRACELAK 875 Query: 61 EHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQR-LDAALGQHQIKWE 119 V + TDS+Y + W+ RG+ T+ P+KN QR L+A L I Sbjct: 876 -GKRVNIYTDSRYAFGVAHDFGMLWQHRGYLTSSGTPIKNGAQVQRLLEALLLPRAIAII 934 Query: 120 WVKGHA-GHPENERCDELARAAAMNPTL 146 + GH+ + + D+ A+ AA Sbjct: 935 KIPGHSRKNSPHALADQYAKEAARQLPT 962 >UniRef50_A1CQB1 Reverse transcriptase, RNaseH, putative n=1 Tax=Aspergillus clavatus RepID=A1CQB1_ASPCL Length = 208 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 24/158 (15%) Query: 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGY-----TRTTNNRMELMAAIVALE 57 K + + DG+CL N ++ Y G F+ G R TN EL A + AL Sbjct: 53 KSIVVAVDGACLYNGRAQARASLGVYWGANNYFNTGIVLDPTDRQTNQVAELQACLEALG 112 Query: 58 ALKE----------HCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRL 107 L + V++ +DS+Y+ +GIT+W +W+ + W+ PV N++ ++ + Sbjct: 113 NLDDVSCAHPAGDRLSTVVIKSDSEYMVRGITEWFPSWRNQRWRNYRGMPVTNLEYFRMI 172 Query: 108 DAAL-----GQHQIKWEWVKGHAGHPENERCDELARAA 140 D + +K+ V N D LA+ A Sbjct: 173 DEYIEDWEAQGLSVKFWLVP----RSMNRMADGLAKDA 206 >UniRef50_UPI0001908521 putative ribonuclease HI n=3 Tax=Rhizobium etli RepID=UPI0001908521 Length = 212 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 11/143 (7%) Query: 5 VEIFTDGSCLGNPGPGGYGAILRYRGREKTF-SAGYTRTTNNRMELMAAIVALEALKE-- 61 + IF DG GG+ + E G + NN MEL A + A + Sbjct: 60 LHIFVDGCYEPGSQHGGWAFVTYRDAVEIASGFGGVQESANNSMELTAVLKAAIWINSEA 119 Query: 62 -HCEVILSTDSQYVRQGITQWIHNWKKRGWKTAD------KKPVKNVDLWQRLDAALGQH 114 + +DS Y +G H WK GWK + ++ + N +LW+ +D L Q+ Sbjct: 120 AGEAATIWSDSVYAVKGCNSRRHIWKNNGWKKSSPNGNARRRTIDNAELWKAVDLQLSQN 179 Query: 115 Q-IKWEWVKGHAGHPENERCDEL 136 + W KGH+G NER D L Sbjct: 180 ALVTVTWCKGHSGIAGNERADAL 202 >UniRef50_Q2HHV6 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=Q2HHV6_CHAGB Length = 786 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 22/145 (15%) Query: 4 QVEIFTDGSCLGNPGP---GGYGAILRYRG------REKTFSAGYTRTTNNRMELMAAIV 54 ++ ++ DG+C N P GG+ + EK + T+NR EL AAI Sbjct: 404 KLLLYIDGACTDNGQPNPRGGWAVVYGPTDDASGRLEEKGPFGHESVPTSNRAELRAAIA 463 Query: 55 ALEALKEHCE----VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAA 110 AL + ++++TDS YV G T W W GW+T + VKN DLW+ L Sbjct: 464 ALRLRNWEQDGFDGMVIATDSSYVVDGATGWTQGWTVNGWRTQSGRAVKNKDLWELLLGE 523 Query: 111 LGQ-----HQIKWEWVKGHAGHPEN 130 + + QI + + N Sbjct: 524 VERWADRGFQITFWKIP----RELN 544 >UniRef50_P31795 Integrase (Fragment) n=73 Tax=root RepID=POL_MLVRK Length = 581 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 7/155 (4%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV 65 +TDGS G GA + A T+ R EL+A AL+ E + Sbjct: 25 TWYTDGSSFLQEGQRKAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-EGKRL 83 Query: 66 ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDA-ALGQHQIKWEWVKGH 124 + TDS+Y +K+RG T++ + +KN L ++ GH Sbjct: 84 NVYTDSRYAFATAHIHGEIYKRRGLLTSEGREIKNKSEILALLKALFLPKRLSIIHCLGH 143 Query: 125 A-GH----PENERCDELARAAAMNPTLEDTGYQVE 154 G N D+ AR AA+ + + +E Sbjct: 144 QKGDSAEARGNRLADQAAREAAIKAPPDTSTLLIE 178 >UniRef50_Q03P82 RNase HI n=15 Tax=Lactobacillus RepID=Q03P82_LACBA Length = 264 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 17/155 (10%) Query: 10 DGSCLGNPGPGG----------YGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEAL 59 DG G + + + T SAG +NNRME+MA AL+ L Sbjct: 79 DGGSRNTGNVAGGHVKTGDKAAWAYRIELPDQVVTGSAGEFGASNNRMEIMAFRNALQRL 138 Query: 60 ----KEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH 114 K + DS+YV +TQ W+ WK+RGW+ + P+ N +LWQ +D L Q Sbjct: 139 VALEKTQESIQFILDSRYVLNAVTQGWLAGWKRRGWRRSAG-PLANAELWQDVDRLLPQF 197 Query: 115 -QIKWEWVKGHAGHPENERCDELARAAAMNPTLED 148 Q+ ++W KGHA + N D L T+++ Sbjct: 198 SQLSYQWTKGHATNQGNVFVDHLLNQTMDQMTVDE 232 >UniRef50_B6QSX7 Ribonuclease H1, putative n=4 Tax=Eurotiomycetidae RepID=B6QSX7_PENMQ Length = 209 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 23/168 (13%) Query: 1 MLKQVEIFTDGSCLGNPGP----GGYGAILRYRGREKTFSAGYTR-TTNNRMELMAAIVA 55 M+ ++I+ DG C N I G+ + + T TN R E+ A I+A Sbjct: 34 MVYTMKIYVDGGCRRNGRSDAVAAAAACIKNKWGKYRIRARYITDDPTNQRAEITAIIMA 93 Query: 56 LEALKEHCE----------VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQ 105 LE + V + +DS+Y + WI+ W + GW + PV N DL + Sbjct: 94 LELALAKYKNDLDEMPLMDVEIFSDSRYAVNCMKTWIYKWCRNGWMNSAGNPVANRDLIE 153 Query: 106 RLDAALGQHQ----IKWEWVKGHAGHPENERCDELARAAAMNPTLEDT 149 Q + +++ W+ ENE D A E+ Sbjct: 154 EASDLDDQVKEIGTVEYTWIP----RSENEVADGACNRAMDALEKENR 197 >UniRef50_A8X0Y9 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8X0Y9_CAEBR Length = 146 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 14/142 (9%) Query: 6 EIFTDGSCLGNPGPGGYGAILRYRGREKTFSAG---YTRTTNNRMELMAAIVALEALKEH 62 ++TDGSC P Y G+ + +NR EL AA A++ Sbjct: 10 HVYTDGSCRNQGTPNAQAGYGVYWGQGHANNRSGTVSGHQDSNRAELRAAQQAIQTASRQ 69 Query: 63 CE--VILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 V + +DS YVR I + P N DL Q +++ + Sbjct: 70 GYSGVNIHSDSHYVRNAI---------NNSDQFQRAPATNRDLMQSINSMKSNVSVSAHH 120 Query: 121 VKGHAGHPENERCDELARAAAM 142 VKGH+GH N + LA A A Sbjct: 121 VKGHSGHHGNSQAHSLASAGAK 142 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.162 0.515 Lambda K H 0.267 0.0489 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,176,479,344 Number of Sequences: 3077464 Number of extensions: 47821365 Number of successful extensions: 146431 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1493 Number of HSP's successfully gapped in prelim test: 1323 Number of HSP's that attempted gapping in prelim test: 141148 Number of HSP's gapped (non-prelim): 3039 length of query: 155 length of database: 1,040,396,356 effective HSP length: 117 effective length of query: 38 effective length of database: 680,333,068 effective search space: 25852656584 effective search space used: 25852656584 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 88 (38.3 bits)