Phyre 2 alignment of P39371 with c3u4yA

Job Description P39371
Confidence 72.08% Date Thu Jan 5 12:00:05 GMT 2012

Rank 57 Aligned Residues 245

% Identity 11% Template c3u4yA_

PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a functionally unknown protein (dtox_1751)2 from desulfotomaculum acetoxidans dsm 771.

Resolution 2.99 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	T	V	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V
Query Conservation
Alig confidence						.																													.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation						.																													.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence	N	F	G	I	V	.	V	E	Q	H	L	R	R	I	S	F	F	S	T	D	T	L	E	I	L	N	Q	I	T	L	G	Y	D	F	.	.	.	.	V	D	T	A	I	T	S	D	C	S	N	V	V	V	T	S	D	F	C	Q	T	.	.	.	.	.	.	.	.	.	L	V	Q	I	E	T	Q	L	E	P	P	K
Template Known Secondary structure						.			G	G	G	T							T	T	T														.	.	.	.							S	S	S								S	T	T			.	.	.	.	.	.	.	.	.							S	S	S	S
Template Predicted Secondary structure						.																													.	.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
	7	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60										.	.	.	.	.	.	.	.	.	70	.	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	V	A	I	Q	E	G	Q	S	S	X	A	D	V	D	I	T	P	D	D	Q	F	A	V	T	V	T	G	L	N	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	F	N	X	Q	S	Y	S	F	L	K	N	K
Template Known Secondary structure								S	S									T	T	S	S								S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S								T	T	T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.																																					.	.	.	.	.	.	110	.	.	.	.	.	.

	199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	D	S	L	I	F	A	G
Query Conservation
Alig confidence													.																					.	.	.	.	.
Template Conservation													.																					.	.	.	.	.
Template Sequence	F	I	S	T	I	P	I	P	Y	D	A	V	.	G	I	A	I	S	P	N	G	N	G	L	I	L	I	D	R	S	S	A	N	.	.	.	.	.	T	V	R	R	F	K	I	D	A	D	G	V	L	F	D	T	G	Q	E	F	I	S	G	G	T	R	P	F	N	I	T	F	T	P	D	G	N	F	A	F	V	A
Template Known Secondary structure									T	T			.						T	T	S	S								T	T	T	T	.	.	.	.	.									T	T													S	S	S	S								T	T	S	S
Template Predicted Secondary structure													.																					.	.	.	.	.
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190

	279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P	W	.	.	.	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K	A	V	T	D	S	V
Query Conservation																																																									.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.									.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Template Sequence	N	L	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	S	I	G	I	L	E	T	Q	N	P	E	N	I	T	L	L	N	A	V	G	T	N	N	L	P	G	T	I	V	V	S	R	D	G	S	T	V	Y	V	L	T	.	.	.	.	.	.	E	S	T	V	D	V	F
Template Known Secondary structure		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S	S	T	T	S										S	S									T	T	S	S							.	.	.	.	.	.	S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.
Template SS confidence
	191	.	.	.																						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.							.	.	.	240	.	.	.

	356	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	I	T	V	K	D	N	K	V	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	F	N	Q	L	S	G	T	L	S	F
Template Known Secondary structure				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	244	.	.	.	.	.	250	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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