Job Description P39371 Confidence 100.00% Date Thu Jan 5 12:00:05 GMT 2012 Rank 2 Aligned Residues 279 % Identity 17% Template c2zwaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:leucine carboxyl methyltransferase 2; PDBTitle: crystal structure of trna wybutosine synthesizing enzyme2 tyw4 Resolution 1.70 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																											.	.	.																			.	.	.	.																		.	.
Query SS confidence																											.	.	.																			.	.	.	.																		.	.
Query Sequence		E	T	P	V	P	F	K	S	G	T	G	A	I	D	N	D	T	V	Y	I	G	L	G	S	A	.	.	.	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	.	.	.	.	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	.	.	D	G	N	L	Y	V	F	G	G	I	G
Query Conservation																											.	.	.																			.	.	.	.																		.	.
Alig confidence																											.	.	.																			.	.	.	.						.												.	.
Template Conservation																																																									.
Template Sequence		E	C	P	I	N	R	K	F	G	D	V	D	V	A	G	N	D	V	F	Y	M	G	G	S	N	P	Y	R	V	N	E	I	L	Q	L	S	I	H	Y	D	K	I	D	M	K	N	I	E	V	S	S	S	E	V	P	.	V	A	R	M	C	H	T	F	T	T	I	S	R	N	N	Q	L	L	L	I	G	G	R	K
Template Known Secondary structure				T	T			B	S							S	S								B	S	S	S	B											S	S												S				.				B	S							T	T	T	T								B	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	.	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A
Query Conservation																																												.
Alig confidence					.	.	.	.																							.													.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																							.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	H	.	.	.	.	Q	G	L	S	D	N	W	I	F	D	M	K	T	R	E	W	S	M	I	K	S	L	.	S	H	T	R	F	R	H	S	A	C	S	L	P	D	G	N	V	L	I	L	G	G	V	T	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T	.	.	.	.		B									T	T	T	T									.	S	S			B	S							T	T	S								B		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.																							.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		462	.	.					.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.													.	.	.	.
Query SS confidence																																			.	.													.	.	.	.
Query Sequence		H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q	W	S	Y	A	G	E	S	P	.	.	W	Y	G	T	A	G	A	A	V	V	N	K	.	.	.	.	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N
Query Conservation																																			.	.													.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.													.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	M	L	L	Y	N	V	T	E	E	I	F	K	D	V	T	P	K	D	E	F	F	Q	N	S	L	V	S	A	G	L	E	F	D	P	V	S	K	Q	G	I	I	L	G	G	G	F	M	D	Q	T	T	V	S	D	K	A	I	I	F	K	Y	D	A	E	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.		S						T	T	T	T								S	S	G	G	G	G	S			B	S							T	T	T	T								B		T	T	S	S		B											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
		248	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure					.	.	.																					.																																																					.
Query SS confidence					.	.	.																					.																																																					.
Query Sequence		L	K	W	.	.	.	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	.	N	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	.
Query Conservation					.	.	.																					.																																																					.
Alig confidence					.	.	.																					.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	T	E	P	I	T	V	I	K	K	L	Q	H	P	L	F	Q	R	Y	G	S	Q	I	K	Y	I	T	P	R	K	L	L	I	V	G	G	T	S	P	S	G	L	F	D	R	T	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	S	L	D	P	L	S	E	T	L	T	S	I	P	I	S	R
Template Known Secondary structure		S	S												G	G	G			B	S								T	T								B		S	S					T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.															.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
						323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.				.	.	.	350	.	.	.		.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																									.	.	.								.
Query SS confidence		.	.	.	.																									.	.	.								.
Query Sequence		.	.	.	.	S	Q	G	R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G	G	E	T	A	.	.	.	G	G	K	A	V	T	D	.	S	V	L	I	T	V
Query Conservation		.	.	.	.																									.	.	.								.
Alig confidence		.	.	.	.																									.	.	.								.
Template Conservation
Template Sequence		R	I	W	E	D	H	S	L	M	L	A	G	F	S	L	V	S	T	T	I	H	I	I	G	G	G	A	T	C	Y	G	F	G	S	V	T	N	V	G	L	K	L	I	A	I
Template Known Secondary structure							S					S	S																		T	T	S
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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