Phyre 2 alignment of P39371 with c2xbgA

Job Description P39371
Confidence 81.98% Date Thu Jan 5 12:00:05 GMT 2012

Rank 50 Aligned Residues 288

% Identity 13% Template c2xbgA_

PDB info PDB header:photosynthesis Chain: A: PDB Molecule:ycf48-like protein; PDBTitle: crystal structure of ycf48 from thermosynechococcus2 elongatus

Resolution 1.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence	M	M	A	S	F	A	A	N	A	S	V	L	P	E	T	P	V	P	F	K	S	G	T	G	A	I	D	N	D	T	V	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F
Query Conservation
Alig confidence														.																											.	.	.
Template Conservation														.																											.	.	.
Template Sequence	I	P	A	L	D	Y	N	P	W	E	A	I	Q	.	L	P	T	T	A	T	I	L	D	M	S	F	I	D	R	H	H	G	W	L	V	G	V	N	A	T	.	.	.	L	M	E	T	R	D	G	G	Q	T	W	E	P	R	T	L	V	L	D	H	S	D	Y	R	F	N	S	V	S	F	Q	G	N	E	G	W	I
Template Known Secondary structure			B		S	S								.		S		S	S								S	S	S	S							T	T	T		.	.	.					S	S	T	T	S	S									S													T	T
Template Predicted Secondary structure														.																											.	.	.
Template SS confidence
	39	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																							.
Query SS confidence																																						.																							.
Query Sequence	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L	M	S	H	A	P	M	G	.	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	.	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I
Query Conservation																																						.																							.
Alig confidence							.	.	.	.	.	.	.	.	.	.																						.																							.
Template Conservation							.	.	.	.	.	.	.	.	.	.
Template Sequence	V	G	E	P	P	I	.	.	.	.	.	.	.	.	.	.	M	L	H	T	T	D	G	G	Q	S	W	S	Q	I	P	L	D	P	K	L	P	G	S	P	R	L	I	K	A	L	G	N	G	S	A	E	M	I	T	N	V	G	A	I	Y	R	T	K	D	S	G	K	N	W	Q	A	L	V	Q	E	A	I	G	V
Template Known Secondary structure				T	T		.	.	.	.	.	.	.	.	.	.					S	S	T	T	S	S								T	T		S	S										T	T							T	T							S	S	T	T	S	S							S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.
Template SS confidence
	115	.	.	.	.	120											.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

	169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q	W	S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.
Template Sequence	M	R	N	L	N	R	S	P	S	G	E	Y	V	A	V	S	S	R	G	S	F	Y	S	T	W	E	P	G	Q	T	A	W	E	P	H	N	R	T	T	S	R	R	L	H	N	M	G	F	T	P	D	G	R	L	W	M	I	V	N	G	G	.	.	.	.	.	.	.	.	K	I	A	F	S	D	P	D	N	S	E
Template Known Secondary structure								T	T	S							T	T	S	S							T	T		S	S								S	S	S									T	T	S							T	T	T	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.
Template SS confidence
	185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.									.	.	.	.	250	.	.	.	.	.	.

	249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.
Predicted Secondary structure																								.																																																					.	.
Query SS confidence																								.																																																					.	.
Query Sequence	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	.	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	.	.	Q	G
Query Conservation																								.																																																					.	.
Alig confidence																								.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	N	W	G	E	L	L	S	P	L	R	R	N	S	V	G	F	L	D	L	A	Y	R	T	P	N	E	V	W	L	A	G	G	A	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	C	S	Q	D	G	G	Q	T	W	Q	Q	D	V	D	V	K	K	V	P	S
Template Known Secondary structure						B		T	T	S	S			S								S	S	S	S							S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	T	T	S	S					G	G	G	T	T	S	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.																								.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	F	Y	K	I	L	F	F	S	P	D	Q	G	F	I	L	G	Q
Template Known Secondary structure										T	T							S
Template Predicted Secondary structure
Template SS confidence
	314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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