Job Description P39371 Confidence 100.00% Date Thu Jan 5 12:00:05 GMT 2012 Rank 7 Aligned Residues 293 % Identity 16% Template c2vz1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:galactose oxidase; PDBTitle: premat-galactose oxidase Resolution 1.91 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		K	T	I	T	A	L	A	I	M	M	A	S	F	A	A	N	A	S	V	L	P	E	T	P	V	P	F	K	S	G	T	G	A	I	D	.	.	.	N	D	T	V	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T
Query Conservation																																					.	.	.
Alig confidence							.	.	.																												.	.	.																				.	.														.
Template Conservation							.	.	.																																																		.	.														.
Template Sequence		I	T	L	T	S	.	.	.	S	W	D	P	S	T	G	I	V	S	D	R	T	V	T	V	T	K	H	D	M	F	C	P	G	I	S	M	D	G	N	G	Q	I	V	V	T	G	G	N	D	A	K	K	T	S	L	Y	D	.	.	S	S	S	D	S	W	I	P	G	P	D	M	Q	.	V	A	R	G	Y	Q	S
Template Known Secondary structure							.	.	.				T	T	T										T	T					S	S							T	T	S							S	S	S	T	T							.	.	T	T	T	T									S	.	S			B	S
Template Predicted Secondary structure							.	.	.																																																		.	.														.
Template SS confidence
		201	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.
		80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.														.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure						.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	F	I	.	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K	L	M	S	H	A	P	M	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G
Query Conservation						.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.															.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		S	A	T	M	S	D	G	R	V	F	T	I	G	G	S	W	S	G	G	.	.	.	.	V	F	E	K	N	G	E	V	Y	S	P	S	S	K	T	W	T	S	L	P	N	A	K	V	N	P	M	L	T	A	D	K	Q	G	L	Y	R	S	D	N	H	A	W	L	F	G	W	K	K	G	S	V	F	Q	A	G	P
Template Known Secondary structure						T	T	S								B	T	S	S		.	.	.	.	S	S									T	T	T	T						T	T	S		S	G	G	G					T	T	T					T	S	S							G	G	G							S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.					.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.
Query Sequence		V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q	W	S	Y	A	G	E	S	P	W	.	.	.	.	.	.	.	Y	G	T	A	G	A	A	V	V	N	K
Query Conservation																																																																.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	A	M	N	W	Y	Y	T	S	G	S	G	D	V	K	S	A	G	K	R	Q	S	N	R	G	V	A	P	D	A	M	C	G	N	A	V	M	Y	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								S	T	T												T	T							B	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																										351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
				219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.																		.	.	.	.	.																																				.
Query SS confidence		.	.																		.	.	.	.	.																																				.
Query Sequence		.	.	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	.	.	.	.	.	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	.	N	D	S	L	I	F	A	G	G	A	G	F	K	G	S	R	E	N	Y	Q
Query Conservation		.	.																		.	.	.	.	.																																				.
Alig confidence		.	.																		.	.	.	.	.																								.	.											.
Template Conservation																																																	.	.
Template Sequence		A	V	K	G	K	I	L	T	F	G	G	S	P	D	Y	Q	D	S	D	A	T	T	N	A	H	I	I	T	L	G	E	P	G	T	S	P	N	T	V	F	A	S	N	G	L	Y	F	.	.	A	R	T	F	H	T	S	V	V	L	P	D	G	S	T	F	I	T	G	G	Q	R	R	G	I	P	F	E	D	S	T
Template Known Secondary structure		T	T	T	T								B	S	S	S	S	S	S	B												S	T	T	S								T	T			S	S	.	.			B	S							T	T	S								B	S	B			T	T				S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.			.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.
Predicted Secondary structure																																														.	.																			.	.
Query SS confidence																																														.	.																			.	.
Query Sequence		N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P	W	.	.	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K	A	V	T	.	.	D	S	V	L	I	T
Query Conservation																																														.	.																			.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.																																	.	.																			.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	.	.	.	.	.	.	.	.	.	.	.	V	F	T	P	E	I	Y	V	P	E	Q	D	T	F	Y	K	Q	N	P	N	S	I	V	R	V	Y	H	S	I	S	L	L	L	P	D	G	R	V	F	N	G	G	G	G	L	C	G	D	C	T	T	N	H	F	D	A	Q	I	F	T
Template Known Secondary structure		B	.	.	.	.	.	.	.	.	.	.	.									G	G	G	T									S	S				T	T							T	T	S											T	T		S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		469												470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions