Job Description P39371 Confidence 95.99% Date Thu Jan 5 12:00:05 GMT 2012 Rank 23 Aligned Residues 123 % Identity 23% Template c1su3A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:interstitial collagenase; PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action Resolution 2.20 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																			.	.	.	.																.	.
Query SS confidence																																																			.	.	.	.																.	.
Query Sequence		S	V	L	P	E	T	P	V	P	F	K	S	G	T	G	A	I	D	N	D	T	V	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	.	.	.	.	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	.	.	D	G	N	L	Y	V	F	G	G	I
Query Conservation																																																			.	.	.	.																.	.
Alig confidence																													.	.	.																				.	.	.	.																.	.										.
Template Conservation																													.	.	.																																																		.
Template Sequence		V	F	W	P	Q	L	P	N	G	L	E	A	A	Y	E	F	A	D	R	D	E	V	R	F	F	K	G	.	.	.	N	K	Y	W	A	V	Q	G	Q	N	V	L	H	G	Y	P	K	D	I	Y	S	S	F	G	F	P	R	T	V	K	H	I	D	A	A	L	S	E	E	N	T	G	K	T	Y	F	F	V	A	.
Template Known Secondary structure		G	T		T	T	S		S	S								G	G	G	T							T	.	.	.	T							T	T				T	T		S											T	T											T	T	T	T							T	.
Template Predicted Secondary structure																													.	.	.																																																		.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.				.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.										.
Query SS confidence																									.	.	.	.	.										.
Query Sequence		G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	.	.	.	.	.	W	V	K	L	M	S	H	A	P	.	M	G	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A
Query Conservation																									.	.	.	.	.										.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.										.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	N	K	Y	W	R	Y	D	E	Y	K	R	S	M	D	P	G	Y	P	K	M	I	A	H	D	F	P	G	I	G	H	K	V	D	A	V	F	M	K	D	G	F	F	Y	F	F	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	T							T	T	T	T				S	S		S							S	T	T	S		S			S						T	T							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T	Q	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	Q	Y	K	F	D	P	K	T	K	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																					442	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions