Job Description P39371 Confidence 16.88% Date Thu Jan 5 12:00:05 GMT 2012 Rank 94 Aligned Residues 274 % Identity 12% Template c1l0qC_ PDB info PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein Resolution 2.40 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	Y	I	G	L	G	S	A	G	T	A	W	Y	K	L	D	T	Q	A	K	D	K	K	W	T	A	L	A	A	F	P	G	G	P	R	D	Q	A	T	S	A	F	I	D	G	N	L	Y	V	F	G	G	I	G	K	N	S	E	G	L	T	Q	V	F	N	D	V	H	K	Y	N	P	K	T	N	S	W	V	K
Query Conservation
Alig confidence						.																							.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation						.																							.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Sequence		F	A	Y	I	.	A	N	S	E	S	D	N	I	S	V	I	D	V	T	S	N	K	V	T	A	T	I	.	.	.	.	P	V	G	S	N	P	X	G	A	V	I	S	P	D	G	T	K	V	Y	V	A	N	A	H	S	N	D	.	.	.	.	.	.	.	.	.	V	S	I	I	D	T	A	T	N	N	V	I	A
Template Known Secondary structure						.			G	G	G	T							T	T	T	T							.	.	.	.			S	S	S								T	T	S	S							T	T	T	T		.	.	.	.	.	.	.	.	.						T	T	T	T
Template Predicted Secondary structure						.																							.	.	.	.																												.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.					.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		L	M	S	H	A	P	M	G	M	A	G	H	V	T	F	V	H	N	G	K	A	Y	V	T	G	G	V	N	Q	N	.	.	.	I	F	N	G	Y	F	E	D	L	N	E	A	G	K	D	S	T	A	I	D	K	I	N	A	H	Y	F	D	K	K	A	E	D	Y	F	F	N	K	F	L	L	S	F	D	P	S	T
Query Conservation																																.	.	.
Alig confidence									.																							.	.	.
Template Conservation									.
Template Sequence		T	V	P	A	G	S	S	.	P	Q	G	V	A	V	S	P	D	G	K	Q	V	Y	V	T	N	X	A	S	S	T	L	S	V	I	D	T	T	S	N	T	V	A	G	T	V	K	T	G	K	S	P	L	G	L	A	L	S	P	D	G	K	K	L	Y	V	T	N	N	G	D	K	T	V	S	V	I	N	T	V	T
Template Known Secondary structure						S	S	S	.								T	T	S	S							T	T	T	T							T	T	T	T									S	S	S								T	T	S	S							T	T	T	T							T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		69	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	W	S	Y	A	G	E	S	P	W	Y	G	T	A	G	A	A	V	V	N	K	G	D	K	T	W	L	I	N	G	E	A	K	P	G	L	R	T	D	A	V	F	E	L	D	F	T	G	N	N	L	K	W	N	K	L	A	P	V	S	S	P	D	G	V	A	G	G	F	A	G	I	S	N	D	S	L	I	F
Query Conservation
Alig confidence											.	.																							.	.	.	.	.	.	.																										.	.
Template Conservation											.	.																							.	.	.	.	.	.	.																										.	.
Template Sequence		K	A	V	I	N	T	V	S	V	.	.	G	R	S	P	K	G	I	A	V	T	P	D	G	T	K	V	Y	V	A	N	F	D	.	.	.	.	.	.	.	S	X	S	I	S	V	I	D	T	V	T	N	S	V	I	D	T	V	K	V	E	A	A	P	S	.	.	G	I	A	V	N	P	E	G	T	K	A	Y	V
Template Known Secondary structure		T									.	.		S	S								T	T	S	S							T	T	.	.	.	.	.	.	.	T	T							T	T	T	T									S	S				.	.						T	T	S	S
Template Predicted Secondary structure											.	.																							.	.	.	.	.	.	.																										.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	A	G	F	K	G	S	R	E	N	Y	Q	N	G	K	N	Y	A	H	E	G	L	K	K	S	Y	S	T	D	I	H	L	W	H	N	G	K	W	D	K	S	G	E	L	S	Q	G	R	A	Y	G	V	S	L	P	W	N	N	S	L	L	I	I	G	G	E	T	A	G	G	K	A	V	T	D	S	V	L
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template Sequence		T	N	V	D	K	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	T	V	S	X	I	D	T	G	T	N	K	I	T	A	R	I	P	V	G	P	D	P	A	G	I	A	V	T	P	D	G	K	K	V	Y	V	A	L	.	.	.	.	.	.	.	S	F	N	T	V	S	V
Template Known Secondary structure						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T	T										S	S								T	T	S	S							.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.																					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	V	K	D	N	K	V	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	T	A	T	N	T	I	T	A
Template Known Secondary structure				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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