Phyre 2 Results for P0AF03

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0AF03
Date | Thu Jan 5 11:24:45 GMT 2012
Unique Job ID | be9602afe7a6a95b

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1di6a_
Top template information
Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 94%
183 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | T | L | R | I | G | L | V | S | I | S | D | R | A | S | S | G | V | Y | Q | D | K | G | I | P | A | L | E | E | W | L | T | S | A | L | T | T | P | F | E | L | E | T | R | L | I | P | D | E | Q | A | I | I | E | Q | T | L | C | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | V | D | E | M | S | C | H | L | V | L | T | T | G | G | T | G | P | A | R | R | D | V | T | P | D | A | T | L | A | V | A | D | R | E | M | P | G | F | G | E | Q | M | R | Q | I | S | L | H | F | V | P | T | A | I | L | S | R | Q | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | V | I | R | K | Q | A | L | I | L | N | L | P | G | Q | P | K | S | I | K | E | T | L | E | G | V | K | D | A | E | G | N | V | V | V | H | G | I | F | A | S | V | P | Y | C | I | Q | L | L | E | G | P | Y | V | E | T | A | P | E | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | .
Sequence |  | V | A | A | F | R | P | K | S | A | R | R | D | V | S | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1di6a_ |

### PDB 1di6 chain A

Region: 2 - 191
Aligned: 183
Modelled: 190
Confidence: 100.0%
Identity: 99%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
2 |
| d2f7wa1 |

### PDB 2f7w chain A domain 1

Region: 2 - 186
Aligned: 173
Modelled: 173
Confidence: 100.0%
Identity: 57%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
3 |
| d1uuya_ |

### PDB 1uuy chain A

Region: 2 - 152
Aligned: 151
Modelled: 151
Confidence: 100.0%
Identity: 34%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
4 |
| c2is8A_ |

### PDB 2is8 chain A

Region: 4 - 175
Aligned: 158
Modelled: 160
Confidence: 100.0%
Identity: 42%
PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8

Phyre2
5 |
| d1jlja_ |

### PDB 1jlj chain A

Region: 2 - 152
Aligned: 151
Modelled: 151
Confidence: 100.0%
Identity: 36%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
6 |
| d1mkza_ |

### PDB 1mkz chain A

Region: 2 - 164
Aligned: 158
Modelled: 163
Confidence: 100.0%
Identity: 27%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
7 |
| c3rfqC_ |

### PDB 3rfq chain C

Region: 1 - 152
Aligned: 148
Modelled: 152
Confidence: 100.0%
Identity: 28%
PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum

Phyre2
8 |
| c2pjkA_ |

### PDB 2pjk chain A

Region: 2 - 154
Aligned: 151
Modelled: 153
Confidence: 100.0%
Identity: 23%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor
PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii

Phyre2
9 |
| c2g4rB_ |

### PDB 2g4r chain B

Region: 5 - 152
Aligned: 144
Modelled: 148
Confidence: 100.0%
Identity: 31%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga

Phyre2
10 |
| d1y5ea1 |

### PDB 1y5e chain A domain 1

Region: 2 - 154
Aligned: 149
Modelled: 153
Confidence: 100.0%
Identity: 30%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
11 |
| d2g2ca1 |

### PDB 2g2c chain A domain 1

Region: 2 - 152
Aligned: 145
Modelled: 150
Confidence: 100.0%
Identity: 20%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MogA-like

Phyre2
12 |
| c3kbqA_ |

### PDB 3kbq chain A

Region: 5 - 151
Aligned: 143
Modelled: 147
Confidence: 100.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum

Phyre2
13 |
| d2nqra3 |

### PDB 2nqr chain A domain 3

Region: 4 - 161
Aligned: 142
Modelled: 158
Confidence: 100.0%
Identity: 15%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
14 |
| d2ftsa3 |

### PDB 2fts chain A domain 3

Region: 5 - 161
Aligned: 147
Modelled: 157
Confidence: 100.0%
Identity: 13%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
15 |
| c2nqqA_ |

### PDB 2nqq chain A

Region: 2 - 178
Aligned: 161
Modelled: 177
Confidence: 99.9%
Identity: 15%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q

Phyre2
16 |
| c2fu3A_ |

### PDB 2fu3 chain A

Region: 2 - 172
Aligned: 161
Modelled: 171
Confidence: 99.9%
Identity: 12%
PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain

Phyre2
17 |
| c1uz5A_ |

### PDB 1uz5 chain A

Region: 2 - 177
Aligned: 155
Modelled: 176
Confidence: 99.9%
Identity: 14%
PDB header:molybdopterin biosynthesis
Chain: A: PDB Molecule:402aa long hypothetical molybdopterin
PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii

Phyre2
18 |
| d1uz5a3 |

### PDB 1uz5 chain A domain 3

Region: 5 - 156
Aligned: 131
Modelled: 152
Confidence: 99.9%
Identity: 16%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
19 |
| d1wu2a3 |

### PDB 1wu2 chain A domain 3

Region: 1 - 157
Aligned: 124
Modelled: 130
Confidence: 99.9%
Identity: 16%
Fold: Molybdenum cofactor biosynthesis proteins
Superfamily: Molybdenum cofactor biosynthesis proteins
Family: MoeA central domain-like

Phyre2
20 |
| c1wu2B_ |

### PDB 1wu2 chain B

Region: 2 - 171
Aligned: 134
Modelled: 145
Confidence: 99.8%
Identity: 18%
PDB header:structural genomics,biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein;
PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |
100 |
101 |
102 |
103 |
104 |
105 |
106 |
107 |
108 |
109 |
110 |
111 |
112 |
113 |
114 |
115 |
116 |
117 |
118 |
119 |
120 |
121 |
122 |
123 |
124 |
125 |
126 |
127 |
128 |
129 |
130 |
131 |
132 |
133 |
134 |
135 |
136 |
137 |
138 |
139 |
140 |
141 |
142 |
143 |
144 |
145 |
146 |
147 |
148 |
149 |
150 |
151 |
152 |
153 |
154 |
155 |
156 |
157 |
158 |
159 |
160 |
161 |
162 |
163 |
164 |
165 |
166 |
167 |
168 |
169 |
170 |
171 |
172 |
173 |
174 |
175 |
176 |
177 |
178 |
179 |
180 |
181 |
182 |
183 |
184 |
185 |
186 |
187 |
188 |
189 |
190 |
191 |
192 |
193 |
194 |
195 |
196 |
197 |
198 |
199 |
200 |
201 |
202 |
203 |
204 |
205 |
206 |
207 |
208 |
209 |
210 |
211 |
212 |
213 |
214 |
215 |
216 |
217 |
218 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1di6a_ |
|  | 100.0 | 99 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
2 | d2f7wa1 |
|  | 100.0 | 57 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
3 | d1uuya_ |
|  | 100.0 | 34 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
4 | c2is8A_ |
|  | 100.0 | 42 | PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
5 | d1jlja_ |
|  | 100.0 | 36 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
6 | d1mkza_ |
|  | 100.0 | 27 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
7 | c3rfqC_ |
|  | 100.0 | 28 | PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
8 | c2pjkA_ |
|  | 100.0 | 23 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii
9 | c2g4rB_ |
|  | 100.0 | 31 | PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga
10 | d1y5ea1 |
|  | 100.0 | 30 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
11 | d2g2ca1 |
|  | 100.0 | 20 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like
12 | c3kbqA_ |
|  | 100.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
13 | d2nqra3 |
|  | 100.0 | 15 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
14 | d2ftsa3 |
|  | 100.0 | 13 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
15 | c2nqqA_ |
|  | 99.9 | 15 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q
16 | c2fu3A_ |
|  | 99.9 | 12 | PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain
17 | c1uz5A_ |
|  | 99.9 | 14 | PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii
18 | d1uz5a3 |
|  | 99.9 | 16 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
19 | d1wu2a3 |
|  | 99.9 | 16 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
20 | c1wu2B_ |
|  | 99.8 | 18 | PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3
21 | d1xi8a3 |
| not modelled | 99.7 | 18 | Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like
22 | d1gpma2 |
| not modelled | 93.1 | 10 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
23 | d1wl8a1 |
| not modelled | 92.5 | 16 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
24 | c3qd5B_ |
| not modelled | 92.0 | 17 | PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
25 | d1s1ma1 |
| not modelled | 90.7 | 15 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
26 | d2a9va1 |
| not modelled | 88.9 | 15 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
27 | c3onoA_ |
| not modelled | 84.5 | 16 | PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
28 | d1i7qb_ |
| not modelled | 83.6 | 17 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
29 | c2xecD_ |
| not modelled | 83.5 | 17 | PDB header:isomerase Chain: D: PDB Molecule:putative maleate isomerase; PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
30 | d1di0a_ |
| not modelled | 82.6 | 12 | Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase
31 | d1u2ma_ |
| not modelled | 82.4 | 17 | Fold:OmpH-like Superfamily:OmpH-like Family:OmpH-like
32 | d1rvv1_ |
| not modelled | 82.2 | 15 | Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase
33 | d1nqua_ |
| not modelled | 81.9 | 15 | Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase
34 | c3s99A_ |
| not modelled | 81.2 | 13 | PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak
35 | c3c5yD_ |
| not modelled | 81.1 | 20 | PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
36 | c2ppwA_ |
| not modelled | 80.4 | 16 | PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
37 | d1jrla_ |
| not modelled | 80.3 | 18 | Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:TAP-like
38 | d1iofa_ |
| not modelled | 78.8 | 11 | Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
39 | d1a9xb2 |
| not modelled | 78.6 | 16 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
40 | d1qf6a1 |
| not modelled | 78.5 | 18 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
41 | c3he8A_ |
| not modelled | 78.5 | 13 | PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
42 | d1k9vf_ |
| not modelled | 78.0 | 20 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
43 | d1q7ra_ |
| not modelled | 76.3 | 14 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
44 | c2obxH_ |
| not modelled | 75.9 | 19 | PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
45 | c2fqxA_ |
| not modelled | 75.5 | 15 | PDB header:transport protein Chain: A: PDB Molecule:membrane lipoprotein tmpc; PDBTitle: pnra from treponema pallidum complexed with guanosine
46 | c3hp4A_ |
| not modelled | 74.6 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:gdsl-esterase; PDBTitle: crystal structure of psychrotrophic esterase esta from2 pseudoalteromonas sp. 643a inhibited by monoethylphosphonate
47 | d2bona1 |
| not modelled | 74.3 | 15 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
48 | d1vcoa1 |
| not modelled | 72.7 | 17 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
49 | d1i1qb_ |
| not modelled | 69.9 | 17 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
50 | c3a9rA_ |
| not modelled | 69.7 | 14 | PDB header:isomerase Chain: A: PDB Molecule:d-arabinose isomerase; PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
51 | d1nn4a_ |
| not modelled | 68.8 | 12 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
52 | d1dhsa_ |
| not modelled | 68.0 | 32 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Deoxyhypusine synthase, DHS
53 | d2naca2 |
| not modelled | 68.0 | 14 | Fold:Flavodoxin-like Superfamily:Formate/glycerate dehydrogenase catalytic domain-like Family:Formate/glycerate dehydrogenases, substrate-binding domain
54 | d1o1xa_ |
| not modelled | 67.2 | 8 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
55 | c1z0zC_ |
| not modelled | 66.3 | 25 | PDB header:transferase Chain: C: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase; PDBTitle: crystal structure of a nad kinase from archaeoglobus2 fulgidus in complex with nad
56 | d1z0sa1 |
| not modelled | 66.3 | 25 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:NAD kinase-like
57 | c3pu6A_ |
| not modelled | 65.8 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes
58 | d1nyra1 |
| not modelled | 65.6 | 13 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
59 | c2bonB_ |
| not modelled | 64.4 | 15 | PDB header:transferase Chain: B: PDB Molecule:lipid kinase; PDBTitle: structure of an escherichia coli lipid kinase (yegs)
60 | d1ka9h_ |
| not modelled | 64.1 | 14 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
61 | c2v4uA_ |
| not modelled | 62.8 | 18 | PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine
62 | c3giuA_ |
| not modelled | 62.5 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase; PDBTitle: 1.25 angstrom crystal structure of pyrrolidone-carboxylate peptidase2 (pcp) from staphylococcus aureus
63 | c3cq9C_ |
| not modelled | 62.4 | 17 | PDB header:transferase Chain: C: PDB Molecule:uncharacterized protein lp_1622; PDBTitle: crystal structure of the lp_1622 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr114
64 | d2g4ca1 |
| not modelled | 62.3 | 15 | Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS
65 | d2qv7a1 |
| not modelled | 61.9 | 13 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
66 | d2vvpa1 |
| not modelled | 61.8 | 13 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
67 | d1fuia2 |
| not modelled | 61.7 | 14 | Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:L-fucose isomerase, N-terminal and second domains
68 | d2jgra1 |
| not modelled | 61.4 | 17 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
69 | c2pjuD_ |
| not modelled | 61.0 | 10 | PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr
70 | d1a2za_ |
| not modelled | 61.0 | 11 | Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
71 | c3lacA_ |
| not modelled | 60.9 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase; PDBTitle: crystal structure of bacillus anthracis pyrrolidone-carboxylate2 peptidase, pcp
72 | d2nv0a1 |
| not modelled | 60.9 | 17 | Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)
73 | d1jq5a_ |
| not modelled | 59.8 | 13 | Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase
74 | d1auga_ |
| not modelled | 59.3 | 11 | Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
75 | c3s5pA_ |
| not modelled | 59.2 | 15 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
76 | c3l4eA_ |
| not modelled | 58.8 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized peptidase lmo0363; PDBTitle: 1.5a crystal structure of a putative peptidase e protein from listeria2 monocytogenes egd-e
77 | d1xrsa_ |
| not modelled | 58.7 | 12 | Fold:TIM beta/alpha-barrel Superfamily:Cobalamin (vitamin B12)-dependent enzymes Family:D-lysine 5,6-aminomutase alpha subunit, KamD
78 | d1cfza_ |
| not modelled | 58.5 | 10 | Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Hydrogenase maturating endopeptidase HybD
79 | d1c2ya_ |
| not modelled | 58.3 | 10 | Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase
80 | d2ajta2 |
| not modelled | 58.3 | 10 | Fold:FucI/AraA N-terminal and middle domains Superfamily:FucI/AraA N-terminal and middle domains Family:AraA N-terminal and middle domain-like
81 | d1o2da_ |
| not modelled | 58.2 | 17 | Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase
82 | d1saza2 |
| not modelled | 57.8 | 18 | Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Acetokinase-like
83 | c2vk2A_ |
| not modelled | 57.8 | 10 | PDB header:transport protein Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq; PDBTitle: crystal structure of a galactofuranose binding protein
84 | c3en0A_ |
| not modelled | 56.8 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:cyanophycinase; PDBTitle: the structure of cyanophycinase
85 | c3hr4C_ |
| not modelled | 56.8 | 12 | PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex
86 | c3ihkC_ |
| not modelled | 53.9 | 14 | PDB header:transferase Chain: C: PDB Molecule:thiamin pyrophosphokinase; PDBTitle: crystal structure of thiamin pyrophosphokinase from2 s.mutans, northeast structural genomics consortium target3 smr83
87 | d1vlja_ |
| not modelled | 53.3 | 13 | Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase
88 | d2p1ra1 |
| not modelled | 52.5 | 16 | Fold:NAD kinase/diacylglycerol kinase-like Superfamily:NAD kinase/diacylglycerol kinase-like Family:Diacylglycerol kinase-like
89 | c3orsD_ |
| not modelled | 52.1 | 15 | PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
90 | c2i2aA_ |
| not modelled | 51.7 | 30 | PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes
91 | d3clsc1 |
| not modelled | 51.6 | 15 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
92 | d2pjua1 |
| not modelled | 50.6 | 6 | Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like
93 | c3lftA_ |
| not modelled | 50.0 | 15 | PDB header:structure genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of the abc domain in complex with l-trp from2 streptococcus pneumonia to 1.35a
94 | c2ywcC_ |
| not modelled | 49.8 | 10 | PDB header:ligase Chain: C: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: crystal structure of gmp synthetase from thermus thermophilus in2 complex with xmp
95 | c2j37W_ |
| not modelled | 49.0 | 13 | PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
96 | d1ja1a2 |
| not modelled | 48.9 | 5 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
97 | c2vptA_ |
| not modelled | 48.7 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:lipolytic enzyme; PDBTitle: clostridium thermocellum family 3 carbohydrate esterase
98 | d1jr2a_ |
| not modelled | 48.6 | 9 | Fold:HemD-like Superfamily:HemD-like Family:HemD-like
99 | c1jr2A_ |
| not modelled | 48.6 | 9 | PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen-iii synthase; PDBTitle: structure of uroporphyrinogen iii synthase
100 | c1keeH_ |
| not modelled | 48.5 | 23 | PDB header:ligase Chain: H: PDB Molecule:carbamoyl-phosphate synthetase small chain; PDBTitle: inactivation of the amidotransferase activity of carbamoyl phosphate2 synthetase by the antibiotic acivicin
101 | c3m1pA_ |
| not modelled | 48.2 | 12 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
102 | c3k7pA_ |
| not modelled | 48.2 | 12 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
103 | c3lm8D_ |
| not modelled | 47.5 | 14 | PDB header:transferase Chain: D: PDB Molecule:thiamine pyrophosphokinase; PDBTitle: crystal structure of thiamine pyrophosphokinase from2 bacillus subtilis, northeast structural genomics consortium3 target sr677
104 | c3ce9A_ |
| not modelled | 47.4 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycerol dehydrogenase; PDBTitle: crystal structure of glycerol dehydrogenase (np_348253.1) from2 clostridium acetobutylicum at 2.37 a resolution
105 | c1bvyF_ |
| not modelled | 47.2 | 17 | PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
106 | d1bvyf_ |
| not modelled | 47.2 | 17 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
107 | c3r74B_ |
| not modelled | 47.0 | 18 | PDB header:lyase, biosynthetic protein Chain: B: PDB Molecule:anthranilate/para-aminobenzoate synthases component i; PDBTitle: crystal structure of 2-amino-2-desoxyisochorismate synthase (adic)2 synthase phze from burkholderia lata 383
108 | c2an1D_ |
| not modelled | 46.3 | 22 | PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
109 | c2iy3A_ |
| not modelled | 46.2 | 18 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
110 | d1vjga_ |
| not modelled | 46.2 | 13 | Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Hypothetical protein alr1529
111 | d1twda_ |
| not modelled | 45.4 | 25 | Fold:TIM beta/alpha-barrel Superfamily:CutC-like Family:CutC-like
112 | c2issF_ |
| not modelled | 44.8 | 26 | PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
113 | c3mk3L_ |
| not modelled | 44.7 | 12 | PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2
114 | d1wsaa_ |
| not modelled | 44.2 | 11 | Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase
115 | d1iu8a_ |
| not modelled | 43.6 | 13 | Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
116 | c3melC_ |
| not modelled | 43.1 | 15 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:thiamin pyrophosphokinase family protein; PDBTitle: crystal structure of thiamin pyrophosphokinase family protein from2 enterococcus faecalis, northeast structural genomics consortium3 target efr150
117 | c3iwpK_ |
| not modelled | 43.0 | 16 | PDB header:metal binding protein Chain: K: PDB Molecule:copper homeostasis protein cutc homolog; PDBTitle: crystal structure of human copper homeostasis protein cutc
118 | d1o94c_ |
| not modelled | 43.0 | 11 | Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Adenine nucleotide alpha hydrolases-like Family:ETFP subunits
119 | c2r47C_ |
| not modelled | 42.2 | 7 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus
120 | c3s40C_ |
| not modelled | 42.2 | 18 | PDB header:transferase Chain: C: PDB Molecule:diacylglycerol kinase; PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0