 |
| Job Description | P00957 | | Confidence | 20.18% | Date | Thu Jan 5 10:57:20 GMT 2012 |
| Rank | 147 | Aligned Residues | 29 |
| % Identity | 24% | Template | c1ce0B_ |
| PDB info |
PDB header:hiv-1 envelope protein | Chain: B: PDB Molecule:protein (leucine zipper model h38-p1); |
PDBTitle: trimerization specificity in hiv-1 gp41: analysis with a2 gcn4 leucine zipper model
|
| Resolution | 2.40 Å |
|
|   |   |
725 | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | N | N | L | A | D | K | V | R | S | V | L | E | R | T | R | Q | L | E | K | E | L | Q | Q | L | K | E | Q | A |
| Query Conservation |   |
  |   |   |
|   |   |   |
|   |   |
|   |
|
|   |
|   |
|   |
|   |
|   |   |
|   |   |   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |
|
|
|
|
|
|   |
|
|
| Template Sequence |   |
I | K | Q | Q | E | D | K | L | E | E | T | L | S | K | I | Y | H | L | E | N | E | I | A | R | V | K | K | L | L |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|