27/01/2012 07:05:15 : INFO  : Run start: Fri Jan 27 07:05:14 GMT 2012
27/01/2012 07:05:21 : INFO  : Initialised job
27/01/2012 07:05:23 : INFO  : Renaming log file 'phyre2_20120127_070513.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/phyre_20120127_070513.log'
27/01/2012 07:05:24 : INFO  : Initialised job:
Sequence
>batch____
MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLA
AFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRG
ETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDE
VHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPA
MRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTN
SRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVS
KEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV
GGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVD
EWYSRVRRAAPWKDLPRRVFDATLDMLSGRYPSGDFSAFRPKLVWNRETGILTARPGAQL
LAVTSGGTIPDRGMYSVLLPEGEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQI
TRDQVIVTPAPGRSARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEEN
TIANIQGLIEEQRNATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWAVAIAGR
IHALWGADASVVASDDGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARF
RECAARALLMPGRTPGHRTPLWQQRLRASQLLEIAQGYPDFPVILETLRECLQDVYDLPA
LERLMRRLNGGEIQISDVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSEL
LRNLLGQVDPGELLDPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRH
TGSSEEVASYLENLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRV
SYPLRDLFLRYLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEV
FRRLRLRSLQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVM
RVIEQLAGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVALH
LQEYAAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSALQE
ALWALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPVSPRVSYNTPN
LAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTLCRSMEDS
GRIMRGRFVEGLGGAQFAERLTIDRLRDLATQATQTRHYTPVALSANDPANVWGNLLPWP
AHPATLVPTRRAGALVVVSGGKLLLYLAQGGKKMLVWQEKEELLAPEVFHALTTALRREP
RLRFTLTEVNDLPVRQTPMFTLLREAGFSSSPQGLDWG

27/01/2012 07:05:25 : INFO  : Checked sequence
27/01/2012 07:05:28 : INFO  : Finding homologues with PSI-BLAST
27/01/2012 07:05:29 : INFO  : PSI-BLAST 3 iterations
27/01/2012 07:12:03 : INFO  : PSI-BLAST 5 iterations
27/01/2012 07:22:06 : INFO  : Finished PSI-BLAST
27/01/2012 07:22:09 : INFO  : Running Buildali to generate a3m file
27/01/2012 10:13:07 : INFO  : Converting to HMM
27/01/2012 10:15:38 : INFO  : Calibrating HMM
27/01/2012 10:16:21 : INFO  : Searching HMM database
27/01/2012 10:41:34 : INFO  : Finished buildali
27/01/2012 10:41:36 : INFO  : Predicting secondary structure
27/01/2012 10:41:45 : INFO  : Predicted secondary structure (PSI-Pred)
27/01/2012 10:41:47 : INFO  : Predicting Disordered regions
27/01/2012 10:41:52 : INFO  : Predicted Disorder (Disopred)
27/01/2012 10:41:55 : INFO  : Running memsat_svm check
27/01/2012 10:48:17 : INFO  : Running memsat_svm full
27/01/2012 10:55:54 : INFO  : Predicted Transmembrane (memsat_svm) ID 'be13e6f9a5261a33'
27/01/2012 10:55:56 : INFO  : Initialising fold library search
27/01/2012 10:56:00 : INFO  : Initialised search input
27/01/2012 10:56:03 : INFO  : Building Ensemble models
27/01/2012 10:56:08 : INFO  : Building hh.c2xgjA_.model.1.pdb
27/01/2012 10:56:35 : INFO  : Building hh.c3l9oA_.model.2.pdb
27/01/2012 10:56:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/hh.c3l9oA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/c3l9oA_.2.pdb
27/01/2012 10:56:57 : INFO  : Building hh.c2va8A_.model.3.pdb
27/01/2012 10:57:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/hh.c2va8A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/c2va8A_.3.pdb
27/01/2012 10:57:21 : INFO  : Building hh.c4a4zA_.model.4.pdb
27/01/2012 10:57:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/hh.c4a4zA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/c4a4zA_.4.pdb
27/01/2012 10:57:43 : INFO  : Building hh.c2zj2A_.model.5.pdb
27/01/2012 10:58:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/hh.c2zj2A_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/c2zj2A_.5.pdb
27/01/2012 10:58:06 : INFO  : Building hh.c2p6uA_.model.6.pdb
27/01/2012 10:58:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/hh.c2p6uA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/be13e6f9a5261a33/c2p6uA_.6.pdb
27/01/2012 10:58:29 : INFO  : Building c2xgjA_.1.pdb
27/01/2012 10:58:50 : INFO  : Building c3l9oA_.2.pdb
27/01/2012 10:59:11 : INFO  : Building c2va8A_.3.pdb
27/01/2012 10:59:29 : INFO  : Building c4a4zA_.4.pdb
27/01/2012 10:59:50 : INFO  : Building c2zj2A_.5.pdb
27/01/2012 11:00:09 : INFO  : Building c2p6uA_.6.pdb
27/01/2012 11:00:27 : INFO  : Building c2v1xB_.7.pdb
27/01/2012 11:00:42 : INFO  : Building c1oywA_.8.pdb
27/01/2012 11:00:59 : INFO  : Building c1gl9B_.9.pdb
27/01/2012 11:01:17 : INFO  : Building c1gm5A_.10.pdb
27/01/2012 11:01:35 : INFO  : Building c2eyqA_.11.pdb
27/01/2012 11:01:55 : INFO  : Building c2db3D_.12.pdb
27/01/2012 11:02:11 : INFO  : Building c3i5yA_.13.pdb
27/01/2012 11:02:27 : INFO  : Building c3tmiA_.14.pdb
27/01/2012 11:02:44 : INFO  : Building c3rc8A_.15.pdb
27/01/2012 11:03:03 : INFO  : Building c3ewsA_.16.pdb
27/01/2012 11:03:24 : INFO  : Building c3bxzA_.17.pdb
27/01/2012 11:03:43 : INFO  : Building c1hv8B_.18.pdb
27/01/2012 11:04:04 : INFO  : Building c1s2mA_.19.pdb
27/01/2012 11:04:23 : INFO  : Building c1xtkA_.20.pdb
27/01/2012 11:07:58 : INFO  : Finished HH model building
27/01/2012 11:08:02 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
27/01/2012 11:09:48 : INFO  : html domain output complete ID 'be13e6f9a5261a33'
27/01/2012 14:31:44 : INFO  : Run end  : Fri Jan 27 14:31:42 GMT 2012
