96 d1rifa_ Probab=99.85   E-value=1.4e-20  Score=154.28  Aligned_columns=152  Identities=20%

Q ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             89989999999997699899994788516899999999999732100111223668818999829989899999999998
Q batch____        29 QPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIP  108 (1538)
Q Consensus        29 ~pt~~Q~~a~~~i~~g~~~li~apTGsGKTlaa~l~~l~~l~~~~~~~~~~~~~~~~~~~lyi~P~kaL~~q~~~~l~~~  108 (1538)
                      .|+++|.+++..+++++++++++|||||||+++++.+...+.+...            +++||+|+++|++|+.++++++
T Consensus       113 ~lr~yQ~~~i~~~l~~~~~ii~~~tGsGKT~~~~~~i~~~~~~~~~------------~~lii~p~~~L~~q~~~~~~~~  180 (282)
T d1rifa_         113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEG------------KILIIVPTTALTTQMADDFVDY  180 (282)
T ss_dssp             CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSS------------EEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC------------EEEEEECCHHHHHHHHHHHHHH
T ss_conf             7788899999999847985999368881379999999999742798------------0999955289999999999986


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCHHHCCEEEECCCCHHCCCC
Q ss_conf             75656667640477678069999878888899999627998999394899999843478461104289921621110795
Q batch____       109 LKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSK  188 (1538)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~Gdt~~~~~~~~~~~~~~IlvtTPe~l~~~L~~~~~~~l~~v~~vVvDE~H~l~~~~  188 (1538)
                      +...            ...+....++......   .....+|+|||++++.    +.....++++.+||+||||++.   
T Consensus       181 ~~~~------------~~~~~~~~~~~~~~~~---~~~~~~iii~t~~~l~----~~~~~~~~~~~~vIiDEaH~~~---  238 (282)
T d1rifa_         181 RLFS------------HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVV----KQPKEWFSQFGMMMNDECHLAT---  238 (282)
T ss_dssp             TSCC------------GGGEEECSTTCSSTTC---CCTTCSEEEECHHHHT----TSCGGGGGGEEEEEEETGGGCC---
T ss_pred             CCCC------------CCCEEECCCCCCCHHC---CCCCCCEEEECHHHHH----HHHHHHHHCCCEEEEECCCCCC---
T ss_conf             0757------------7420000167530001---1343578897399998----8788423125289983800276---


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             1899999999999864899849999676988
Q batch____       189 RGAHLALSLERLDALLHTSAQRIGLSATVRS  219 (1538)
Q Consensus       189 rg~~l~~~l~rl~~~~~~~~~~iglSAT~~~  219 (1538)
                           ...+..+...+.....++|||||+.+
T Consensus       239 -----~~~~~~~~~~~~~~~~~lglTaT~~~  264 (282)
T d1rifa_         239 -----GKSISSIISGLNNCMFKFGLSGSLRD  264 (282)
T ss_dssp             -----HHHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred             -----CHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf             -----83389999822437859998530588