148 d1pjra1 Probab=97.93   E-value=9.9e-05  Score=48.18  Aligned_columns=73  Identities=19%

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             88998999999999769989999478851689999999999973210011122366881899982998989999999999
Q batch____        28 KQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQI  107 (1538)
Q Consensus        28 ~~pt~~Q~~a~~~i~~g~~~li~apTGsGKTlaa~l~~l~~l~~~~~~~~~~~~~~~~~~~lyi~P~kaL~~q~~~~l~~  107 (1538)
                      ...++-|.+++..  ...+++|.+|-|||||.+..--+...+.+......         ++|+++|++.+++++..++.+
T Consensus        10 ~~L~~~Q~~~I~~--~~~~~lI~G~pGTGKT~~l~~~i~~ll~~~~~~~~---------~iL~lt~s~~a~~~~~~r~~~   78 (315)
T d1pjra1          10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPW---------NILAITFTNKAAREMRERVQS   78 (315)
T ss_dssp             TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGG---------GEEEEESSHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHH---------HEEEECCCHHHHHHHHHHHHH
T ss_conf             4128999999966--89978998389987879999999999980899976---------777871698999989887887


Q ss_pred             HHHH
Q ss_conf             8756
Q batch____       108 PLKG  111 (1538)
Q Consensus       108 ~~~~  111 (1538)
                      ....
T Consensus        79 ~~~~   82 (315)
T d1pjra1          79 LLGG   82 (315)
T ss_dssp             HHGG
T ss_pred             HHCC
T ss_conf             5113