274 c1vmaA_ Probab=88.60   E-value=1.2  Score=20.76  Aligned_columns=141  Identities=15%

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             99994788516899999999999732100111223668818999829989899999999998756566676404776780
Q batch____        47 ALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNL  126 (1538)
Q Consensus        47 ~li~apTGsGKTlaa~l~~l~~l~~~~~~~~~~~~~~~~~~~lyi~P~kaL~~q~~~~l~~~~~~~~~~~~~~~~~~~~~  126 (1538)
                      ++++-|||+|||-+..=-+..-.           ..+..+-++..=+.|.=+.+|.+.+-..++                
T Consensus        95 i~~~Gp~G~GKTTt~aklA~~~~-----------~~g~~v~li~~D~~R~gA~eQL~~~a~~~~----------------  147 (294)
T c1vmaA_          95 IMVVGVNGTGKTTSCGKLAKMFV-----------DEGKSVVLAAADTFRAAAIEQLKIWGERVG----------------  147 (294)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH-----------HTTCCEEEEEECTTCHHHHHHHHHHHHHHT----------------
T ss_pred             EEEEECCCCCHHHHHHHHHHHHH-----------HCCCCEEEEECCCCCHHHHHHHHHHHHHHC----------------
T ss_conf             99980688760248999999999-----------679948999758768647999999997619----------------


Q ss_pred             EEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCHHHCCEEEECCCCHHCCCCHHHHHHHHHHHHHHHCC-
Q ss_conf             6999987888889999962799899939489999984347846110428992162111079518999999999998648-
Q batch____       127 RVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH-  205 (1538)
Q Consensus       127 ~v~~~~Gdt~~~~~~~~~~~~~~IlvtTPe~l~~~L~~~~~~~l~~v~~vVvDE~H~l~~~~rg~~l~~~l~rl~~~~~-  205 (1538)
                       +.++.+.++.+..               +.+...+..   ...++.++|+||-+-.   +.+-..+..-+..+..... 
T Consensus       148 -v~~~~~~~~~~~~---------------~~~~~~~~~---~~~~~~d~IlIDTaGr---~~~d~~~~~el~~~~~~~~~  205 (294)
T c1vmaA_         148 -ATVISHSEGADPA---------------AVAFDAVAH---ALARNKDVVIIDTAGR---LHTKKNLMEELRKVHRVVKK  205 (294)
T ss_dssp             -CEEECCSTTCCHH---------------HHHHHHHHH---HHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHHHGGG
T ss_pred             -CEEEECCCCCCHH---------------HHHHHHHHH---HHHCCCCEEEECCCCC---CCCCHHHHHHHHHHHHHHHH
T ss_conf             -8289748836989---------------999999999---9977998999818889---87857999999999999630


Q ss_pred             -----CCCCEEEEECCCC--CHHHHHHHHCCCCCEEEE
Q ss_conf             -----9984999967698--889999971677873898
Q batch____       206 -----TSAQRIGLSATVR--SASDVAAFLGGDRPVTVV  236 (1538)
Q Consensus       206 -----~~~~~iglSAT~~--~~~~~~~~l~~~~~~~i~  236 (1538)
                           +.-..+.+|||.+  ..+++..+........++
T Consensus       206 ~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~iI  243 (294)
T c1vmaA_         206 KIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGII  243 (294)
T ss_dssp             TCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             35668853999811468789999999996308997699