BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (89 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 178 5e-44 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 130 1e-29 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 123 2e-27 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 121 5e-27 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 120 1e-26 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 117 1e-25 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 112 3e-24 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 111 8e-24 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 110 1e-23 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 109 2e-23 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 105 5e-22 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 104 8e-22 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 102 4e-21 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 102 5e-21 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 101 7e-21 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 100 2e-20 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 97 1e-19 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 97 2e-19 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 96 3e-19 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 93 2e-18 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 92 6e-18 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 91 8e-18 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 90 2e-17 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 88 7e-17 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 87 1e-16 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 87 2e-16 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 86 3e-16 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 86 3e-16 UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 81 1e-14 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 79 5e-14 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 72 4e-12 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 53 3e-06 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 52 6e-06 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 51 1e-05 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 50 2e-05 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 47 1e-04 UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW 47 2e-04 UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 40 0.028 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 178 bits (451), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 84/89 (94%), Positives = 85/89 (95%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M D +Q TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP Sbjct: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 Query: 61 GAVLITGITPQEARAKGENEAAFAARIHS 89 GAVLITGITPQEARAKGENEAAFAARIHS Sbjct: 62 GAVLITGITPQEARAKGENEAAFAARIHS 90 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 61/89 (68%), Positives = 68/89 (76%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M +PTFL+HDYETFG P DRPAQFAAIRTDS+FN +GEP FYCKPADD+LP P Sbjct: 1 MAQGKTEPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARIHS 89 A LITGITPQ AR +G E FAARIH+ Sbjct: 61 QACLITGITPQAARRRGLAEIEFAARIHA 89 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 56/85 (65%), Positives = 67/85 (78%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 +K TF F+DYE+FG PALDRPAQFA IRTDS+FN+IGEP +FYCK DYLP P AV+ Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61 Query: 65 ITGITPQEARAKGENEAAFAARIHS 89 +TGITPQ+ A+G E FAARIH+ Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHA 86 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 52/84 (61%), Positives = 68/84 (80%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 +QP+ L+HDYET+G +P D+P+QFA IRTD + N+IGEPE+FYC P DYLP P A L+ Sbjct: 11 EQPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLV 70 Query: 66 TGITPQEARAKGENEAAFAARIHS 89 TGITPQ+A+ +G +EA FAARIH+ Sbjct: 71 TGITPQKAQREGLSEAEFAARIHT 94 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 51/83 (61%), Positives = 61/83 (73%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K P FLF+DYETFG H ALD+PAQFA IRTD N+I +P+ FYC P+DDYLP PG+VLI Sbjct: 7 KTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLI 66 Query: 66 TGITPQEARAKGENEAAFAARIH 88 T ITPQ G NE F+ +I+ Sbjct: 67 THITPQYTEKNGTNEYNFSQKIY 89 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 47/79 (59%), Positives = 61/79 (77%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 FLF+DYETFG H +LD+PAQF++IRTD FN++ EP+ FYC P+DDYLP P ++LITGIT Sbjct: 12 FLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSILITGIT 71 Query: 70 PQEARAKGENEAAFAARIH 88 P+ G NE F+ +IH Sbjct: 72 PEYTEKHGFNEYKFSKKIH 90 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 52/52 (100%), Positives = 52/52 (100%) Query: 38 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS 89 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS 175 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 55/87 (63%), Positives = 63/87 (72%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MT + TFL+HDYETFGT+ DRPAQFAAIRTD+E NVIG P + YC+PA D+LP P Sbjct: 1 MTPSPSHHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARI 87 A LITGITPQ KG E FAA+I Sbjct: 61 QACLITGITPQLCLEKGIPEYQFAAQI 87 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 48/82 (58%), Positives = 60/82 (73%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 Q TF +HDYET+G +PA+DRP+QFA +RTD + N+IGEP V YCKP +D P P A L+T Sbjct: 2 QKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLVT 61 Query: 67 GITPQEARAKGENEAAFAARIH 88 G+TPQE AKG E F +IH Sbjct: 62 GLTPQETLAKGVTEREFIKQIH 83 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 1/88 (1%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MT T+ Q T +HDYET+G PA+DRP QFA +RTD + N++GEP Y +PA D LP+P Sbjct: 1 MTSTE-QITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKP 59 Query: 61 GAVLITGITPQEARAKGENEAAFAARIH 88 A LITGITPQEA AKG +EA F A IH Sbjct: 60 EACLITGITPQEAEAKGVSEADFIAAIH 87 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 49/79 (62%), Positives = 57/79 (72%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT Sbjct: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 Query: 70 PQEARAKGENEAAFAARIH 88 PQ+A G EA F+ RIH Sbjct: 65 PQKALRDGVVEAEFSRRIH 83 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 45/81 (55%), Positives = 61/81 (75%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 TFLF+DYETFG +PALD+P+QF+ I+TD +FN+IG + +C P+ DYLP P +VLITGI Sbjct: 10 TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69 Query: 69 TPQEARAKGENEAAFAARIHS 89 +P+ G NE FA +I+S Sbjct: 70 SPKYTSLFGVNEFEFAKKIYS 90 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 49/81 (60%), Positives = 59/81 (72%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P+F ++D ETFGT PA DR AQFA +RTD EFN IG P+V YC+P+DD +P P A L+TG Sbjct: 5 PSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTG 64 Query: 68 ITPQEARAKGENEAAFAARIH 88 ITPQ A G E+AF A IH Sbjct: 65 ITPQYAAELGVPESAFIATIH 85 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 48/79 (60%), Positives = 57/79 (72%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 TF +HDYETFG PA DRP+QFA +RTD + N+IGEP V Y +P DY+P P A LITGI Sbjct: 6 TFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLITGI 65 Query: 69 TPQEARAKGENEAAFAARI 87 TPQ A A+G EA F + I Sbjct: 66 TPQTALAEGVVEAQFMSTI 84 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 61/87 (70%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M K+PTFL +DYETFG +PALDRPAQFA+IR ++ + + EVF+C+ +DYLP P Sbjct: 1 MLSNIKKPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARI 87 +VLITGITP + + G E FA +I Sbjct: 61 ESVLITGITPYDTLSNGLLEPQFAYQI 87 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/85 (55%), Positives = 57/85 (67%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + QPTF +HDYET+G P +DRPAQFA +RT +F +G P Y +P D+LP P A Sbjct: 7 NNKNQPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEA 66 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 VLITGITPQ A +G NEA FA I Sbjct: 67 VLITGITPQYALNQGVNEANFAQAI 91 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/79 (60%), Positives = 52/79 (65%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 T +HDYETFG P DRPAQFA +RTD + N IGEP V Y KP DY+P P A LITGI Sbjct: 6 TLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLITGI 65 Query: 69 TPQEARAKGENEAAFAARI 87 TPQ A A G EA F I Sbjct: 66 TPQAALAAGVPEADFIKAI 84 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 46/81 (56%), Positives = 53/81 (65%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 T +HDYET G +P DRP QFA +RTD N IG+P V YCKPA D LP P A L+TGI Sbjct: 7 TLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTGI 66 Query: 69 TPQEARAKGENEAAFAARIHS 89 TPQ A +G E F A IH+ Sbjct: 67 TPQMAATRGLPEPEFIALIHA 87 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/81 (55%), Positives = 58/81 (71%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +F + D+ET GT PA DRP QFA IRTD +FN IGEP +FYC+ A+D LPQP A L+TGI Sbjct: 8 SFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGI 67 Query: 69 TPQEARAKGENEAAFAARIHS 89 +PQ+A +G EA F + + Sbjct: 68 SPQDANREGLCEAEFMQAVEA 88 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 55/80 (68%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +F +HDYET G + DRP QFA +RTD FNVI EP V YC+P+ D L P A+ +TGI Sbjct: 6 SFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVTGI 65 Query: 69 TPQEARAKGENEAAFAARIH 88 +P +A A+G NE AF A+I Sbjct: 66 SPYKALAEGANEGAFMAKIQ 85 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 91.7 bits (226), Expect = 6e-18, Method: Composition-based stats. Identities = 42/81 (51%), Positives = 54/81 (66%), Gaps = 1/81 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 TF ++DYETFG P +DR +QFA IRTD FN++ E ++FYCKP +D L P LITGI Sbjct: 3 TFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITGI 61 Query: 69 TPQEARAKGENEAAFAARIHS 89 +PQ KG E F +IH+ Sbjct: 62 SPQLCEQKGMIEHKFIKKIHA 82 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 47/79 (59%), Positives = 55/79 (69%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D ETFG P R AQFAA+RTD+ N I EP F+ +PADD LP P A LITGI Sbjct: 17 SFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLITGI 76 Query: 69 TPQEARAKGENEAAFAARI 87 TPQ+A +G NEA ARI Sbjct: 77 TPQQALREGINEADAFARI 95 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 41/81 (50%), Positives = 51/81 (62%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + ++DYET G +P DRP Q A IRTD N IG P YC+PADD LP P A L+TGI Sbjct: 4 SIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLVTGI 63 Query: 69 TPQEARAKGENEAAFAARIHS 89 TP+ +G EA F R+H+ Sbjct: 64 TPRLLAERGLCEAEFVTRLHA 84 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 44/80 (55%), Positives = 49/80 (61%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLFHDYET+G P D P QFAAIRTD EP K DYLP P AVL+TGI Sbjct: 7 SFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTGI 66 Query: 69 TPQEARAKGENEAAFAARIH 88 TPQ A+GE E F +IH Sbjct: 67 TPQMTLAEGEYEYTFMQKIH 86 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 43/80 (53%), Positives = 56/80 (70%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D ETFG P R +Q+AAIRTD++ N I P F+ +PADD LP P A L+TGI Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63 Query: 69 TPQEARAKGENEAAFAARIH 88 TPQ+A A+G +EA RI+ Sbjct: 64 TPQQALAEGISEAEAFDRIN 83 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 39/82 (47%), Positives = 56/82 (68%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P++L++DYET+GT P+ DR AQFAA+RTD + N+I EP +CKP D + PGAV IT Sbjct: 9 PSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQITR 68 Query: 68 ITPQEARAKGENEAAFAARIHS 89 ++P E G +E F+ +H+ Sbjct: 69 LSPLELEQTGLSEWEFSQAVHN 90 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/79 (54%), Positives = 53/79 (67%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D ETFG P R AQFAA+RTD++ VI EP F+ +PADD LP P A ++T I Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAI 63 Query: 69 TPQEARAKGENEAAFAARI 87 TPQ A +G EA ARI Sbjct: 64 TPQHALREGVTEAEAFARI 82 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 86.3 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 49/80 (61%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + ++DYET G +P DRP Q A IRTD N I EP YC+P+DD LP P A +ITGI Sbjct: 25 SLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGI 84 Query: 69 TPQEARAKGENEAAFAARIH 88 TP +G EA F R+H Sbjct: 85 TPGRLAEQGLGEADFMTRVH 104 >UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y2_BUCCC Length = 475 Score = 80.9 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 54/88 (61%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + + +F+DYETFG + ALD+ +QF +I TD++F+ I + + +C P DYLP P Sbjct: 1 MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARIH 88 A+LIT I PQ G NE + +IH Sbjct: 61 EAILITKILPQYTYKYGLNEYFLSKKIH 88 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D+ET G+ P DRP QFAA+RT+ E I P Y + + LP P AVL+TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 69 TPQE-ARAKGENEAAFAARIHS 89 PQ A + G EA FAA IH+ Sbjct: 62 LPQTLASSGGRPEAEFAALIHA 83 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/85 (44%), Positives = 47/85 (55%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 D TF F+D ET G P DR QFA RT + + IGEP + DD LP P AV+ Sbjct: 4 DMAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVM 63 Query: 65 ITGITPQEARAKGENEAAFAARIHS 89 +TGITPQ+ +G EA F H+ Sbjct: 64 VTGITPQKTHEEGIAEAEFIKLFHN 88 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G PA D+P QFAAI TD F V + C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENF-VEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 70 PQE 72 P + Sbjct: 62 PDQ 64 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 TFLF+D ET G +PA D+ FAAIRTD E I + +D +P PGA + + Sbjct: 3 TFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIV-ISLRNDIVPSPGAFITHRL 61 Query: 69 TPQEARAKGENEAAFAARIH 88 TP++ + G E A IH Sbjct: 62 TPEDLK-DGLCEYQGVALIH 80 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G P D+P QFAAI TD F V + C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENF-VEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 70 PQE 72 P + Sbjct: 62 PDQ 64 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F F D ET GT PA D+P QFA I TD + ++ C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDI-RCRLSPHILPAPWALAVTGVS 60 Query: 70 P 70 P Sbjct: 61 P 61 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 ++ + T+LF+D ET G + D+ QFAAIRTD N + E+ + D +P P A+ Sbjct: 2 SNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEIL-IRLNPDVIPSPEAM 60 Query: 64 LITGIT-PQEARAKGENEA 81 +I + Q K E EA Sbjct: 61 IIHRFSIDQMLSGKAEIEA 79 >UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW Length = 482 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 T LF+D ET G + + D+ QFAAIRTD +FN I E F+ K D P P A + I Sbjct: 6 TLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEI-ERFNFFVKLNPDTTPSPMATITHHI 64 Query: 69 TPQEARAKGENEAAFAARIHS 89 + +A G E +IH Sbjct: 65 SIAQANT-GIAEYQAIRKIHK 84 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G D+ QFAAI TD + N + E+ C+ +P P A+L ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFEL-RCRLQPHVVPHPKAMLANRLS 61 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 158 5e-38 UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 156 2e-37 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 155 3e-37 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 152 3e-36 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 151 5e-36 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 149 2e-35 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 143 2e-33 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 142 3e-33 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 141 5e-33 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 141 6e-33 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 141 7e-33 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 141 8e-33 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 140 9e-33 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 139 3e-32 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 139 3e-32 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 139 3e-32 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 138 4e-32 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 135 3e-31 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 135 4e-31 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 134 1e-30 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 133 2e-30 UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 129 2e-29 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 129 3e-29 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 129 4e-29 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 128 6e-29 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 127 8e-29 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 125 4e-28 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 125 4e-28 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 125 5e-28 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 124 1e-27 UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW 106 2e-22 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 105 3e-22 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 100 1e-20 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 95 8e-19 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 93 3e-18 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 92 8e-18 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 91 1e-17 Sequences not found previously or not previously below threshold: UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 77 2e-13 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 66 3e-10 UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microsc... 63 3e-09 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 61 1e-08 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 52 7e-06 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 51 1e-05 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 50 2e-05 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 49 4e-05 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 49 4e-05 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 47 2e-04 UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chlo... 47 2e-04 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 47 2e-04 UniRef50_UPI000186E428 oligoribonuclease, putative n=1 Tax=Pedic... 47 2e-04 UniRef50_A5KRR8 Oligoribonuclease n=2 Tax=candidate division TM7... 46 3e-04 UniRef50_Q83GA7 Oligoribonuclease n=2 Tax=Tropheryma whipplei Re... 46 3e-04 UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine... 46 4e-04 UniRef50_A4NXF4 Oligoribonuclease n=1 Tax=Haemophilus influenzae... 46 4e-04 UniRef50_A5UFF2 Oligoribonuclease n=25 Tax=cellular organisms Re... 46 4e-04 UniRef50_C0DYM7 Putative uncharacterized protein n=1 Tax=Eikenel... 46 5e-04 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 45 7e-04 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 45 7e-04 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 45 0.001 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 45 0.001 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 44 0.001 UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Act... 44 0.001 UniRef50_Q7PD30 AGAP012804-PA n=10 Tax=Endopterygota RepID=Q7PD3... 44 0.001 UniRef50_Q9Y3B8 Oligoribonuclease, mitochondrial n=17 Tax=Eutele... 44 0.002 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 44 0.002 UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27... 43 0.002 UniRef50_UPI00015B53D6 PREDICTED: similar to ENSANGP00000010833 ... 43 0.003 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 43 0.003 UniRef50_UPI00015B5BB5 PREDICTED: similar to ENSANGP00000010833 ... 43 0.003 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 43 0.003 UniRef50_A1VGE3 Exonuclease, RNase T and DNA polymerase III n=4 ... 43 0.003 UniRef50_Q47VZ4 Oligoribonuclease n=73 Tax=cellular organisms Re... 43 0.004 UniRef50_B8L493 Exonuclease n=1 Tax=Stenotrophomonas sp. SKA14 R... 43 0.004 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 43 0.004 UniRef50_A6VD64 Oligoribonuclease n=25 Tax=Proteobacteria RepID=... 42 0.005 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 42 0.005 UniRef50_D1NUV9 Oligoribonuclease n=3 Tax=Bifidobacterium RepID=... 42 0.005 UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminoc... 42 0.005 UniRef50_Q4SLB2 Chromosome 7 SCAF14557, whole genome shotgun seq... 42 0.006 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 42 0.007 UniRef50_Q14JL3 Oligoribonuclease n=21 Tax=Gammaproteobacteria R... 42 0.007 UniRef50_Q31HZ4 Oligoribonuclease n=12 Tax=Gammaproteobacteria R... 41 0.008 UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease do... 41 0.008 UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase II... 41 0.009 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 41 0.009 UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagi... 41 0.009 UniRef50_Q9ZVE0 Oligoribonuclease n=4 Tax=Embryophyta RepID=ORN_... 41 0.012 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 41 0.012 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 41 0.013 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 41 0.015 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 41 0.016 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 40 0.020 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 40 0.022 UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive... 40 0.023 UniRef50_B6JVJ0 Oligoribonuclease n=1 Tax=Schizosaccharomyces ja... 40 0.024 UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC... 40 0.025 UniRef50_Q5P0T5 Oligoribonuclease n=18 Tax=Proteobacteria RepID=... 40 0.025 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 40 0.026 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 40 0.027 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 40 0.037 UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pse... 38 0.080 UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 T... 38 0.090 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 158 bits (400), Expect = 5e-38, Method: Composition-based stats. Identities = 61/89 (68%), Positives = 68/89 (76%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M +PTFL+HDYETFG P DRPAQFAAIRTDS+FN +GEP FYCKPADD+LP P Sbjct: 1 MAQGKTEPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARIHS 89 A LITGITPQ AR +G E FAARIH+ Sbjct: 61 QACLITGITPQAARRRGLAEIEFAARIHA 89 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 84/89 (94%), Positives = 85/89 (95%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M D +Q TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP Sbjct: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 Query: 61 GAVLITGITPQEARAKGENEAAFAARIHS 89 GAVLITGITPQEARAKGENEAAFAARIHS Sbjct: 62 GAVLITGITPQEARAKGENEAAFAARIHS 90 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 155 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 52/87 (59%), Positives = 69/87 (79%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + +QP+ L+HDYET+G +P D+P+QFA IRTD + N+IGEPE+FYC P DYLP P A Sbjct: 8 NNTEQPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEA 67 Query: 63 VLITGITPQEARAKGENEAAFAARIHS 89 L+TGITPQ+A+ +G +EA FAARIH+ Sbjct: 68 CLVTGITPQKAQREGLSEAEFAARIHT 94 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 48/83 (57%), Positives = 60/83 (72%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 Q TF +HDYET+G +PA+DRP+QFA +RTD + N+IGEP V YCKP +D P P A L+ Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 66 TGITPQEARAKGENEAAFAARIH 88 TG+TPQE AKG E F +IH Sbjct: 61 TGLTPQETLAKGVTEREFIKQIH 83 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 151 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 56/85 (65%), Positives = 67/85 (78%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 +K TF F+DYE+FG PALDRPAQFA IRTDS+FN+IGEP +FYCK DYLP P AV+ Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61 Query: 65 ITGITPQEARAKGENEAAFAARIHS 89 +TGITPQ+ A+G E FAARIH+ Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHA 86 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 55/87 (63%), Positives = 63/87 (72%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MT + TFL+HDYETFGT+ DRPAQFAAIRTD+E NVIG P + YC+PA D+LP P Sbjct: 1 MTPSPSHHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARI 87 A LITGITPQ KG E FAA+I Sbjct: 61 QACLITGITPQLCLEKGIPEYQFAAQI 87 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 48/82 (58%), Positives = 57/82 (69%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 TF +HDYETFG PA DRP+QFA +RTD + N+IGEP V Y +P DY+P P A LI Sbjct: 3 SSETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACLI 62 Query: 66 TGITPQEARAKGENEAAFAARI 87 TGITPQ A A+G EA F + I Sbjct: 63 TGITPQTALAEGVVEAQFMSTI 84 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 49/82 (59%), Positives = 59/82 (71%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 P+F ++D ETFGT PA DR AQFA +RTD EFN IG P+V YC+P+DD +P P A L+T Sbjct: 4 APSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVT 63 Query: 67 GITPQEARAKGENEAAFAARIH 88 GITPQ A G E+AF A IH Sbjct: 64 GITPQYAAELGVPESAFIATIH 85 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 41/84 (48%), Positives = 51/84 (60%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + ++DYET G +P DRP Q A IRTD N IG P YC+PADD LP P A L+ Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 66 TGITPQEARAKGENEAAFAARIHS 89 TGITP+ +G EA F R+H+ Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHA 84 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 141 bits (356), Expect = 6e-33, Method: Composition-based stats. Identities = 53/88 (60%), Positives = 64/88 (72%), Gaps = 1/88 (1%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MT T+ Q T +HDYET+G PA+DRP QFA +RTD + N++GEP Y +PA D LP+P Sbjct: 1 MTSTE-QITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKP 59 Query: 61 GAVLITGITPQEARAKGENEAAFAARIH 88 A LITGITPQEA AKG +EA F A IH Sbjct: 60 EACLITGITPQEAEAKGVSEADFIAAIH 87 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 141 bits (355), Expect = 7e-33, Method: Composition-based stats. Identities = 45/81 (55%), Positives = 58/81 (71%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +F + D+ET GT PA DRP QFA IRTD +FN IGEP +FYC+ A+D LPQP A L+TGI Sbjct: 8 SFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTGI 67 Query: 69 TPQEARAKGENEAAFAARIHS 89 +PQ+A +G EA F + + Sbjct: 68 SPQDANREGLCEAEFMQAVEA 88 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 141 bits (355), Expect = 8e-33, Method: Composition-based stats. Identities = 46/81 (56%), Positives = 53/81 (65%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 T +HDYET G +P DRP QFA +RTD N IG+P V YCKPA D LP P A L+TGI Sbjct: 7 TLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTGI 66 Query: 69 TPQEARAKGENEAAFAARIHS 89 TPQ A +G E F A IH+ Sbjct: 67 TPQMAATRGLPEPEFIALIHA 87 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 140 bits (354), Expect = 9e-33, Method: Composition-based stats. Identities = 48/82 (58%), Positives = 52/82 (63%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 T +HDYETFG P DRPAQFA +RTD + N IGEP V Y KP DY+P P A LI Sbjct: 3 SSETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLI 62 Query: 66 TGITPQEARAKGENEAAFAARI 87 TGITPQ A A G EA F I Sbjct: 63 TGITPQAALAAGVPEADFIKAI 84 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 51/84 (60%), Positives = 61/84 (72%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 K P FLF+DYETFG H ALD+PAQFA IRTD N+I +P+ FYC P+DDYLP PG+VL Sbjct: 6 KKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVL 65 Query: 65 ITGITPQEARAKGENEAAFAARIH 88 IT ITPQ G NE F+ +I+ Sbjct: 66 ITHITPQYTEKNGTNEYNFSQKIY 89 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 57/85 (67%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + QPTF +HDYET+G P +DRPAQFA +RT +F +G P Y +P D+LP P A Sbjct: 7 NNKNQPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEA 66 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 VLITGITPQ A +G NEA FA I Sbjct: 67 VLITGITPQYALNQGVNEANFAQAI 91 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 49/80 (61%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + ++DYET G +P DRP Q A IRTD N I EP YC+P+DD LP P A +ITGI Sbjct: 25 SLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGI 84 Query: 69 TPQEARAKGENEAAFAARIH 88 TP +G EA F R+H Sbjct: 85 TPGRLAEQGLGEADFMTRVH 104 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 47/84 (55%), Positives = 62/84 (73%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + FLF+DYETFG H +LD+PAQF++IRTD FN++ EP+ FYC P+DDYLP P ++L Sbjct: 7 KNEVNFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSIL 66 Query: 65 ITGITPQEARAKGENEAAFAARIH 88 ITGITP+ G NE F+ +IH Sbjct: 67 ITGITPEYTEKHGFNEYKFSKKIH 90 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 TF ++DYETFG P +DR +QFA IRTD FN++ E ++FYCKP +D L P LITG Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITG 60 Query: 68 ITPQEARAKGENEAAFAARIHS 89 I+PQ KG E F +IH+ Sbjct: 61 ISPQLCEQKGMIEHKFIKKIHA 82 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 62/87 (71%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + TFLF+DYETFG +PALD+P+QF+ I+TD +FN+IG + +C P+ DYLP P + Sbjct: 4 QKNTSLTFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPES 63 Query: 63 VLITGITPQEARAKGENEAAFAARIHS 89 VLITGI+P+ G NE FA +I+S Sbjct: 64 VLITGISPKYTSLFGVNEFEFAKKIYS 90 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 61/87 (70%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M K+PTFL +DYETFG +PALDRPAQFA+IR ++ + + EVF+C+ +DYLP P Sbjct: 1 MLSNIKKPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARI 87 +VLITGITP + + G E FA +I Sbjct: 61 ESVLITGITPYDTLSNGLLEPQFAYQI 87 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 49/79 (62%), Positives = 57/79 (72%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT Sbjct: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 Query: 70 PQEARAKGENEAAFAARIH 88 PQ+A G EA F+ RIH Sbjct: 65 PQKALRDGVVEAEFSRRIH 83 >UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y2_BUCCC Length = 475 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 54/88 (61%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + + +F+DYETFG + ALD+ +QF +I TD++F+ I + + +C P DYLP P Sbjct: 1 MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARIH 88 A+LIT I PQ G NE + +IH Sbjct: 61 EAILITKILPQYTYKYGLNEYFLSKKIH 88 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 38/85 (44%), Positives = 47/85 (55%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 D TF F+D ET G P DR QFA RT + + IGEP + DD LP P AV+ Sbjct: 4 DMAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAVM 63 Query: 65 ITGITPQEARAKGENEAAFAARIHS 89 +TGITPQ+ +G EA F H+ Sbjct: 64 VTGITPQKTHEEGIAEAEFIKLFHN 88 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 44/80 (55%), Positives = 49/80 (61%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLFHDYET+G P D P QFAAIRTD EP K DYLP P AVL+TGI Sbjct: 7 SFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTGI 66 Query: 69 TPQEARAKGENEAAFAARIH 88 TPQ A+GE E F +IH Sbjct: 67 TPQMTLAEGEYEYTFMQKIH 86 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 43/80 (53%), Positives = 56/80 (70%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D ETFG P R +Q+AAIRTD++ N I P F+ +PADD LP P A L+TGI Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63 Query: 69 TPQEARAKGENEAAFAARIH 88 TPQ+A A+G +EA RI+ Sbjct: 64 TPQQALAEGISEAEAFDRIN 83 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 127 bits (320), Expect = 8e-29, Method: Composition-based stats. Identities = 47/79 (59%), Positives = 55/79 (69%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D ETFG P R AQFAA+RTD+ N I EP F+ +PADD LP P A LITGI Sbjct: 17 SFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVATLITGI 76 Query: 69 TPQEARAKGENEAAFAARI 87 TPQ+A +G NEA ARI Sbjct: 77 TPQQALREGINEADAFARI 95 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 57/88 (64%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + P++L++DYET+GT P+ DR AQFAA+RTD + N+I EP +CKP D + PG Sbjct: 3 NNATHPPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPG 62 Query: 62 AVLITGITPQEARAKGENEAAFAARIHS 89 AV IT ++P E G +E F+ +H+ Sbjct: 63 AVQITRLSPLELEQTGLSEWEFSQAVHN 90 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 55/83 (66%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 +F +HDYET G + DRP QFA +RTD FNVI EP V YC+P+ D L P A+ + Sbjct: 3 SSESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRV 62 Query: 66 TGITPQEARAKGENEAAFAARIH 88 TGI+P +A A+G NE AF A+I Sbjct: 63 TGISPYKALAEGANEGAFMAKIQ 85 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 125 bits (313), Expect = 5e-28, Method: Composition-based stats. Identities = 43/79 (54%), Positives = 53/79 (67%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D ETFG P R AQFAA+RTD++ VI EP F+ +PADD LP P A ++T I Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAI 63 Query: 69 TPQEARAKGENEAAFAARI 87 TPQ A +G EA ARI Sbjct: 64 TPQHALREGVTEAEAFARI 82 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D+ET G+ P DRP QFAA+RT+ E I P Y + + LP P AVL+TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 69 TPQE-ARAKGENEAAFAARIHS 89 PQ A + G EA FAA IH+ Sbjct: 62 LPQTLASSGGRPEAEFAALIHA 83 >UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW Length = 482 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 T LF+D ET G + + D+ QFAAIRTD +FN I E F+ K D P P A + Sbjct: 2 FSNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEI-ERFNFFVKLNPDTTPSPMATI 60 Query: 65 ITGITPQEARAKGENEAAFAARIHS 89 I+ +A G E +IH Sbjct: 61 THHISIAQANT-GIAEYQAIRKIHK 84 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 TFLF+D ET G +PA D+ FAAIRTD E I + +D +P PGA + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIV-ISLRNDIVPSPGAFITHR 60 Query: 68 ITPQEARAKGENEAAFAARIH 88 +TP++ G E A IH Sbjct: 61 LTPED-LKDGLCEYQGVALIH 80 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 ++ + T+LF+D ET G + D+ QFAAIRTD N + E+ + D +P P A+ Sbjct: 2 SNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEIL-IRLNPDVIPSPEAM 60 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 +I + + + G+ E IH Sbjct: 61 IIHRFSIDQMLS-GKAEIEAIREIH 84 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G PA D+P QFAAI TD F C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVT 61 Query: 70 PQEARAKGENE-AAFAARI 87 P + F+ ++ Sbjct: 62 PDQLTDPSLPSLFEFSQQV 80 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 92.7 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 52/52 (100%), Positives = 52/52 (100%) Query: 38 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS 89 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS 175 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F F D ET GT PA D+P QFA I TD + E C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEV-ERIDIRCRLSPHILPAPWALAVTGVS 60 Query: 70 PQEARAKGENEA-AFAARIHS 89 P A F+ + S Sbjct: 61 PGMLSNPNLPSAFEFSQEVSS 81 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G P D+P QFAAI TD F C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVT 61 Query: 70 PQEARAKGENE-AAFAARI 87 P + F+ ++ Sbjct: 62 PDQLIDPSLPSLFEFSQQV 80 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G D+ QFAAI TD + N + C+ +P P A+L ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDR-FELRCRLQPHVVPHPKAMLANRLS 61 Query: 70 PQEARAKGEN-EAAFAARI 87 + I Sbjct: 62 IERLTDLSLPSHYDMVREI 80 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 66.5 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 2/80 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F D ET G D+ FAAIRTD++ N + +P P A+ ++ Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDR-FEVRSRLLPHVVPHPSALRTNRLS 61 Query: 70 PQEARAKGEN-EAAFAARIH 88 + I Sbjct: 62 IERLIDGTLPSHYEMVRAIQ 81 >UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTJ0_9SPHI Length = 487 Score = 62.6 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K +F+D + G +P D+ + TD FN++ K D +P P A++ Sbjct: 19 KNKNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLLETH-HIEIKKRPDVVPSPEALIA 77 Query: 66 TGITPQEARAKGENEAAFAARIH 88 P + AKG E IH Sbjct: 78 NNWLPSD-LAKGSTEYEAMRHIH 99 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 ++F+D+ET G D+ Q AI + F+++ C +P+PGA+L+ Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDR-FEARCSLKPGTVPEPGALLVNKT 60 Query: 69 TPQEARAKGEN 79 TP + + Sbjct: 61 TPDMLKKTNLS 71 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 K +++ D ET G P +F A+ + + +GE F+ KP Sbjct: 419 NFKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDL-KVGEVTQFFIKPQAKI--GAFTT 475 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 +TGIT Q ++G + RI+ Sbjct: 476 ELTGITQQMLDSEGLSIKDGLQRIY 500 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 51.1 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDS--EFNVIGEPEVFYCKPADDYLPQPGAVL-ITG 67 L D ET G +P +DR + AAI+ D +V+ E Y +D P V +TG Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNKSVMDE----YISLPNDIC-YPENVQEMTG 56 Query: 68 ITPQEARAKGENEAAFA 84 ITP+ KG E A Sbjct: 57 ITPEILELKGHPEEEIA 73 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFN-VIGEPEVFYCKPADDYLPQPGAVL 64 K T++ D ET G P D +F A + N + + F+ KP + L Sbjct: 396 KNETYVVFDLETTGLSPIFDDIIEFGAQKI---LNGKVIDTLQFFVKPNKEI--SEKITL 450 Query: 65 ITGITPQEARAKGENEAAFAARI 87 ITGI Q+ +E +I Sbjct: 451 ITGIKNQDV-ENAISEKEALKKI 472 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + + D ET G P D+ + AAIRTD G P V + Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGR-LDIRITKNSGTKLTPEIVNL 58 Query: 66 TGITPQEARAKGENEAAFA 84 TGI+ + G E Sbjct: 59 TGIS-ESMMRGGVPEPVAI 76 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 5/86 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSE----FNVIGEPEVFYCKPADDYLPQPG 61 K +F D ET G + + AAIR + + +VF P + +PQ Sbjct: 10 KYKAVVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ-K 68 Query: 62 AVLITGITPQEARAKGENEAAFAARI 87 V +TGIT ++ +G EA AAR Sbjct: 69 IVELTGITDEQLENEGITEAEAAARF 94 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + Q +F D ET G +P DR + I+ + G+ ++ + + A Sbjct: 4 NLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPD----GKRDIKTRRVNPEKPISSEASE 59 Query: 65 ITGITPQEARAK 76 ITGIT ++ + + Sbjct: 60 ITGITDEDVKDE 71 >UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chloroflexaceae RepID=A5UUT9_ROSS1 Length = 233 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 14 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 73 D ET G +P D + D + + +P DD P A+ + G+ PQ+ Sbjct: 42 DVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQDV 101 Query: 74 RA 75 Sbjct: 102 EQ 103 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQF-AAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 T++ D ET G P + +F A+I E +I E F+ KP P Sbjct: 401 SSQTYVVFDLETTGLSPRFNEIIEFGASI---IENGIIKESHQFFIKPTKPIPPS--ITE 455 Query: 65 ITGITPQEARAKGENEAAFAARIH 88 IT IT A G ++ +I+ Sbjct: 456 ITKIT-DNTVANGYSQEEGVRKIY 478 >UniRef50_UPI000186E428 oligoribonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E428 Length = 196 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ-PGAVLITG 67 +++ D E G +P D + A I T+ + N + E F D+ L L+ Sbjct: 23 YIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNEWCLVHH 81 >UniRef50_A5KRR8 Oligoribonuclease n=2 Tax=candidate division TM7 RepID=A5KRR8_9BACT Length = 184 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 18/41 (43%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVI 42 D K L+ D E G P DR + AAI TD F + Sbjct: 5 ADMKKHAKLLWLDLEMTGLDPQRDRVLEVAAIATDWNFEEM 45 >UniRef50_Q83GA7 Oligoribonuclease n=2 Tax=Tropheryma whipplei RepID=ORN_TROWT Length = 184 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M ++ D E G +P D + A + TD + + E P+ + L Sbjct: 1 MCVAPTPSHLVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEALGAM 60 Query: 61 GAVL-----ITGITPQEARAKGENEAAFAAR 86 + ++G+ + + +EA + Sbjct: 61 DNYVARMHRVSGLLDELSNGVPVSEAQAMVK 91 >UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJC0_9BACT Length = 469 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +F+D ET G + Q +I+T+ ++ E + C P +P P A++ Sbjct: 6 NLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHE-QNLGCAPLPWAIPYPMAMVTNKK 64 Query: 69 T 69 T Sbjct: 65 T 65 >UniRef50_A4NXF4 Oligoribonuclease n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NXF4_HAEIN Length = 115 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 + + ++ D E G P +R + A I TD N++ E V +D+ L Sbjct: 2 SFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55 >UniRef50_A5UFF2 Oligoribonuclease n=25 Tax=cellular organisms RepID=ORN_HAEIG Length = 182 Score = 45.7 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 + + ++ D E G P +R + A I TD N++ E V +D+ L Sbjct: 2 SFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55 >UniRef50_C0DYM7 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYM7_EIKCO Length = 238 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 T + D E G +P DR + A + TD++ N++ + E + +D+ L Sbjct: 46 TPKPNPLNLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEGMD 105 Query: 62 AVLI-----TGITPQEARAKGENEAAFAARI 87 A TG+T Q + +EA R+ Sbjct: 106 AWNTSTHERTGLT-QRVKDSTLSEAEVEQRL 135 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 45.3 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 4/63 (6%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F D ET G P DR + AA+R D + G F AV + IT Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRD----GSLSRFQSLVNPGVRIPAQAVAVHHIT 64 Query: 70 PQE 72 Sbjct: 65 DDM 67 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 44.9 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 2/71 (2%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 +F D ET G P D+ + AA N I +CK + V +T Sbjct: 5 KKIVFFDTETTGLDPEKDQIIELAAALVTE--NGIELKIDAFCKLPEGEKIPEKIVELTH 62 Query: 68 ITPQEARAKGE 78 IT KG Sbjct: 63 ITDDMLADKGI 73 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 21/41 (51%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGE 44 T +P F D ET G + DR + AA+R DS FN I Sbjct: 15 TPGEPVFAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDS 55 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 44.5 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G DR + I + F G Y P D + P A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINPGDQKV-HPDALAVHGITD 61 Query: 71 QEARAK 76 + + K Sbjct: 62 EFLKDK 67 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + F+ D ET G DR + AIR F E E F + Sbjct: 1 MDKSLWDSGFVAIDVETTGLSNRWDRIVEIGAIR----FTPGSETESFQTFVSPGRPIPS 56 Query: 61 GAVLITGITPQEAR-AKGENEAAFA 84 AV I GIT + A G +EA+ A Sbjct: 57 EAVAIHGITDEMVEGAPGLSEASIA 81 >UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Actinomycetales RepID=Q47TJ3_THEFY Length = 250 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 3/75 (4%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D ET G + DR A I T ++ + P AV I GI+ + Sbjct: 19 FDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWL---VNPGVEIPPEAVAIHGISTEL 75 Query: 73 ARAKGENEAAFAARI 87 A A G A I Sbjct: 76 AVADGIPAPVAVAEI 90 >UniRef50_Q7PD30 AGAP012804-PA n=10 Tax=Endopterygota RepID=Q7PD30_ANOGA Length = 228 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 M++T Q ++ D E G DR + A I TDS+ N+I + D L Sbjct: 38 MSETSVQ-NLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAKGPNIIINEPDAVL 93 >UniRef50_Q9Y3B8 Oligoribonuclease, mitochondrial n=17 Tax=Euteleostomi RepID=ORN_HUMAN Length = 237 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G D+ + A + TDS+ N++ E K D+ L Sbjct: 44 VWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELL 90 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 L+ D ET G P QFA + V+ E +P + + + A+ ++G Sbjct: 2 KKVLWFDLETTGIDPDRHGIIQFAGLAEIE--GVVAESFEIKMQPHEGAMIEDEALAVSG 59 Query: 68 ITPQEARAKGENEAAFAARI 87 + ++ + A I Sbjct: 60 FSREQIASF-TPHAEAYKAI 78 >UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA06_GEMAT Length = 323 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 10/80 (12%) Query: 14 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP------GAVLITG 67 D ET G A D +F A+ D + GE V+ P Y P A ITG Sbjct: 53 DVETTGLDTARDVIIEFGAVPFDFD----GEGRVYTVHPPLSYFEDPGRPIPAEASAITG 108 Query: 68 ITPQEARAKGENEAAFAARI 87 IT + R K ++AA A + Sbjct: 109 ITDDDVRGKRIDDAAVLAAL 128 >UniRef50_UPI00015B53D6 PREDICTED: similar to ENSANGP00000010833 n=1 Tax=Nasonia vitripennis RepID=UPI00015B53D6 Length = 185 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 1 MTDTDKQPT--FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY 56 M + Q ++ D E G + D+ + A+I TD + N++ + ++D Sbjct: 1 MASSAVQKADRIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDV 58 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGI 68 F+ D ET G + AIR + N +V KP+ P + +TGI Sbjct: 52 FVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVL-VKPSRKV---PKKITELTGI 107 Query: 69 TPQEARAKGEN 79 TP+ A+G + Sbjct: 108 TPEMIEAEGVS 118 >UniRef50_UPI00015B5BB5 PREDICTED: similar to ENSANGP00000010833 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5BB5 Length = 188 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 M++ ++ ++ D E G DR + A + TD N++ + +DD L Sbjct: 1 MSNNQRRNRIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDEL 57 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 17/84 (20%) Query: 6 KQPTFLFHDYETFGTHPAL-DRPAQFAAIRT-------DSEFNVIGEPEVFYCKPADDYL 57 + T+ D ET G +P+ D Q A+R F + +P C+P + Sbjct: 540 TELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP----CRPLPE-- 593 Query: 58 PQPGAVLITGITPQEARAKGENEA 81 + + GIT + EA Sbjct: 594 ---ESARVHGITADMLAGQPVIEA 614 >UniRef50_A1VGE3 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Desulfovibrio vulgaris RepID=A1VGE3_DESVV Length = 251 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 2/71 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 TF+ D E G P D A + I F K P+ A+ + Sbjct: 44 HAATFVVLDLEMTGLVPRRDAIIAVAGV--TMRGERILAGRCFEAKMRPHLPPEEDAIAV 101 Query: 66 TGITPQEARAK 76 G+ P E Sbjct: 102 HGLLPDETATH 112 >UniRef50_Q47VZ4 Oligoribonuclease n=73 Tax=cellular organisms RepID=ORN_COLP3 Length = 181 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP-- 58 M D ++ D E G P D + A I TDSE N++ + +F DD L Sbjct: 1 MAGNDSN--LIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNM 58 Query: 59 QPGAVLITG 67 P + G Sbjct: 59 NPWCIEHHG 67 >UniRef50_B8L493 Exonuclease n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L493_9GAMM Length = 188 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 11/80 (13%) Query: 10 FLFHDYETFGTHPALDRPA---------QFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 F+D ET G PA P+ Q AA ++ + KP +P+ Sbjct: 4 IFFYDTETTGL-PAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTIPE- 61 Query: 61 GAVLITGITPQEARAKGENE 80 I GIT ++A G +E Sbjct: 62 EVTRIHGITNEQAEQCGLDE 81 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 T++ D ET G P D +F A+ + IGE F+ KP Sbjct: 402 QNLDNATYVIFDIETTGLFPNFDEIIEFGAVIMQNN-KQIGEKIQFFIKPIQQI--NENV 458 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 +T I+ QE +E +I Sbjct: 459 TNLTNIS-QEMVNNAIDEKTALLKI 482 >UniRef50_A6VD64 Oligoribonuclease n=25 Tax=Proteobacteria RepID=ORN_PSEA7 Length = 180 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G P D + A I TDS+ N + E V ++ L Sbjct: 6 NLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEVL 54 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + + TF+ D+ET G P +D + A++ + ++ E KP+ + + Sbjct: 351 SSFENATFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL-IKPSREI--SRRS 406 Query: 63 VLITGITPQEARAKGENE 80 ITGIT + K E Sbjct: 407 SEITGITQEMLENKRSIE 424 >UniRef50_D1NUV9 Oligoribonuclease n=3 Tax=Bifidobacterium RepID=D1NUV9_9BIFI Length = 219 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 59 +T + +Q ++ D E G D + + + TD E NV+ E F KP+ D + Sbjct: 8 LTYSAQQSRLIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDEGIDFVIKPSKDAVDH 66 >UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B402_RUMGN Length = 300 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 +D ET G +P D P + D + VI E Y +P + P A I GITP++ Sbjct: 137 YDLETTGVNPWKDEPLSMCIM--DLQGKVIFEH---YFRP-EHTKSWPDAAAIHGITPEK 190 Query: 73 ARAK 76 + Sbjct: 191 VANE 194 >UniRef50_Q4SLB2 Chromosome 7 SCAF14557, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SLB2_TETNG Length = 248 Score = 41.8 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G D+ + A + TDS+ N++ E D+ L Sbjct: 7 VWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELL 53 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 15/70 (21%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIR------TDSEFNVIGEPEVFYCKPADDYLPQPGA 62 T + D ET G P DR Q A +R T F+ + +P +P P + Sbjct: 452 TCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPG----RPIP-----PAS 502 Query: 63 VLITGITPQE 72 + GIT Sbjct: 503 TAVHGITDAM 512 >UniRef50_Q14JL3 Oligoribonuclease n=21 Tax=Gammaproteobacteria RepID=ORN_FRAT1 Length = 178 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G + + AAI TD + N+I E E D+ L Sbjct: 6 NLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVL 54 >UniRef50_Q31HZ4 Oligoribonuclease n=12 Tax=Gammaproteobacteria RepID=ORN_THICR Length = 184 Score = 41.4 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + ++ D E G D+ + A + TD+E NV+ E V + YL A Sbjct: 2 KSENNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYLDGMDAWC 61 Query: 65 ITG 67 T Sbjct: 62 TTH 64 >UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease domain n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0H1_9ZZZZ Length = 270 Score = 41.4 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITPQ 71 D ET G +P DR Q+A I D + + + + E+ P P A + + GI+ + Sbjct: 12 FDTETTGLNPRKDRILQYAFIGRDVDGSSVCQVELI--DPGIKI---PEASMNVHGISNE 66 Query: 72 EARAKG 77 + +G Sbjct: 67 DVTGRG 72 >UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase III n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31300 Length = 259 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 16/83 (19%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP------GAVLIT 66 D ET G P DR AA+ + + D+L P GA + Sbjct: 7 FDIETTGIDPQSDRIVT-AAVSLAGDARPTVDH---------DWLVDPGVEIPAGATAVH 56 Query: 67 GITPQEARAKGENEAAFAARIHS 89 GIT ARA+G A I + Sbjct: 57 GITTDHARAEGRASAEAVEEITA 79 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 7/78 (8%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPAD---DYLPQPG-AVLITGI 68 D ET G P D + A+R V E +P + + +P P A + GI Sbjct: 6 FDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQRVHGI 65 Query: 69 TP---QEARAKGENEAAF 83 + Q+A G+ F Sbjct: 66 SDAMVQDAPELGQVLPEF 83 >UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagibacter ubique RepID=Q4FND4_PELUB Length = 475 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 D E+ + + + I D F + F C+ + +PQ A+++ Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDR-FNFRCRLPEGEVPQAMALIVNKT 60 Query: 69 TPQEARAKGENEAAFAARIHS 89 + + +++ + Sbjct: 61 SVDLLTKGNLSHYQMLSQLEA 81 >UniRef50_Q9ZVE0 Oligoribonuclease n=4 Tax=Embryophyta RepID=ORN_ARATH Length = 222 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 + D D + ++ D E G + +DR + A I T+ + E + D L Sbjct: 37 LEDGDYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCL 93 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D ET G DR Q+A I +D + G A I GI+ ++ Sbjct: 42 FDLETTGLDARKDRIVQYALIGSDVD----GSHINLASLVDPRRGIPTAASRIHGISEED 97 Query: 73 ARAKGENE 80 R G E Sbjct: 98 VRGVGSFE 105 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 41.1 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+ D ET G DR +FAAIR F+ I + F P + I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64 Query: 70 PQEARAK 76 R K Sbjct: 65 DAMLRDK 71 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 7/82 (8%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITG 67 TF+ D ET G H D +F+A + + + + + F+ K P P + IT Sbjct: 415 TFVIFDIETTGLHGRYDDVIEFSARKIKNNSEI--DHQQFFLKIDK---PIPKTITEITK 469 Query: 68 ITPQEARAKGENEAAFAARIHS 89 IT + G ++ +I + Sbjct: 470 ITDEMLEG-GIDQQQGLEKIRN 490 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 40.7 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P + D ET G + +R + AA+ + +P P +P P V +TG Sbjct: 293 PCVVVFDLETTGLNKDRNRIIEIAAVNVS---DPTHQPMSTLVNPGRFAVPPP-VVALTG 348 Query: 68 ITPQEARAKGENEAAFAARI 87 IT A AA + Sbjct: 349 ITNAMVSAPAVPSFQRAAEL 368 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 40.3 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 +T + D E+ G + D Q A I+ +++ VI + F ++ Sbjct: 486 LTRGLDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLT--PKKFVGD- 542 Query: 61 GAVLITGITPQEARAKGEN 79 + L+ G + Q + GEN Sbjct: 543 -SYLVHGFSDQFLKENGEN 560 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 39.9 bits (92), Expect = 0.022, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 + +F D ET GT DR Q A I+ ++ + + + P + Sbjct: 4 KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKERLI----NPTIPIPPEVTKVH 59 Query: 67 GITPQE 72 G++ + Sbjct: 60 GVSDEM 65 >UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive type n=4 Tax=Mollicutes RepID=Q2SSE0_MYCCT Length = 1479 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 15/88 (17%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 K +F D ET G P LD +F AI + + + D L +P Sbjct: 424 NQNLKDAKMVFFDLETTGLSPELDEIIEFGAIEYNFKTGE---------RKKIDILIKPK 474 Query: 62 AVL------ITGITPQEARAKGENEAAF 83 + L +T I + K E AF Sbjct: 475 SKLKDFTKKLTNINEEMLENKPGIEVAF 502 >UniRef50_B6JVJ0 Oligoribonuclease n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JVJ0_SCHJY Length = 187 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 MT + P ++ D E G D + AAI TD + N I E DD L Sbjct: 1 MTAALRSP-LVWVDCEMTGLEVGKDVLMEVAAIITDGDLNPIEEKFEETIHVDDDKL 56 >UniRef50_Q7NC15 PolC n=1 Tax=Mycoplasma gallisepticum RepID=Q7NC15_MYCGA Length = 1501 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVF 48 Q +F+ D ET G + ++ + AA+R +E NV F Sbjct: 414 QLSFVIFDIETTGLNAYYEQIIEIAAVRVKAELNVTNHQLEF 455 >UniRef50_Q5P0T5 Oligoribonuclease n=18 Tax=Proteobacteria RepID=ORN_AZOSE Length = 183 Score = 39.9 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 22/51 (43%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 Q ++ D E G P DR + A + TDS+ N + E V D L Sbjct: 5 QNHLIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVL 55 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 14 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 73 D ET G P D A+ ++ ++ + +P P ++ + +TP+E Sbjct: 42 DVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLTPEEL 101 Query: 74 R 74 R Sbjct: 102 R 102 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 39.9 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+ D E G DR +FAA R + NVI E D + + I I+ Sbjct: 9 FVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETL---INPDRVISAESQRIHRIS 64 Query: 70 PQEARAK 76 + + Sbjct: 65 DAMLKDQ 71 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 39.5 bits (91), Expect = 0.037, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP-QPGAVLITGI 68 F+ D ET GT P +D+ + A+R + G+PE + D P PGA + GI Sbjct: 15 FIAFDLETTGTVPGVDQIVEIGAVRF-----IDGQPEAIFATLIDPLRPIPPGASAVNGI 69 Query: 69 TPQEARAK 76 + + K Sbjct: 70 SDDMVKGK 77 >UniRef50_C1DKH9 DNA polymerase III, epsilon subunit n=17 Tax=Pseudomonadaceae RepID=C1DKH9_AZOVD Length = 240 Score = 38.4 bits (88), Expect = 0.080, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 3/82 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 F+ D ET G + D A+ +++ I F C +VLI Sbjct: 40 HAQRFVVLDLETTGLNVERDVVLSIGAVLIEND--AIDLSRQFECTLRRRLKSVTESVLI 97 Query: 66 TGITPQEARAKGENEAAFAARI 87 GI P A A G A R Sbjct: 98 HGIAP-SALAVGTAPAEALLRF 118 >UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 Tax=Rhizobiales RepID=B0UN90_METS4 Length = 223 Score = 38.0 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 2/55 (3%) Query: 14 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 D ET G P D AAIR + I E D P A+ + + Sbjct: 35 DCETTGLDPRRDEIVAVAAIRIRGD--RILTSESLRATVRSDRPSSPEAIKVHRL 87 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 137 9e-32 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 134 8e-31 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 133 2e-30 UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 131 6e-30 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 130 2e-29 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 129 3e-29 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 126 1e-28 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 125 5e-28 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 124 6e-28 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 124 6e-28 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 124 1e-27 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 124 1e-27 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 123 2e-27 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 121 9e-27 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 119 3e-26 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 118 6e-26 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 118 8e-26 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 118 8e-26 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 116 2e-25 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 116 2e-25 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 116 2e-25 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 116 3e-25 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 115 4e-25 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 113 2e-24 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 113 2e-24 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 112 4e-24 UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 111 7e-24 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 111 8e-24 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 110 1e-23 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 108 5e-23 UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW 101 7e-21 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 100 1e-20 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 99 4e-20 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 94 1e-18 UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microsc... 92 6e-18 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 91 8e-18 UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 91 9e-18 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 88 1e-16 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 85 9e-16 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 81 1e-14 UniRef50_Q83GA7 Oligoribonuclease n=2 Tax=Tropheryma whipplei Re... 80 2e-14 UniRef50_C0DYM7 Putative uncharacterized protein n=1 Tax=Eikenel... 80 3e-14 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 79 3e-14 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 78 7e-14 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 78 1e-13 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 77 2e-13 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 73 3e-12 UniRef50_UPI000186E428 oligoribonuclease, putative n=1 Tax=Pedic... 72 5e-12 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 72 7e-12 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 71 1e-11 UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chlo... 70 2e-11 UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Act... 70 3e-11 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 68 6e-11 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 68 1e-10 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 68 1e-10 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 67 1e-10 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 67 2e-10 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 66 3e-10 UniRef50_A4NXF4 Oligoribonuclease n=1 Tax=Haemophilus influenzae... 66 4e-10 UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine... 66 4e-10 UniRef50_A5UFF2 Oligoribonuclease n=25 Tax=cellular organisms Re... 66 5e-10 UniRef50_Q7PD30 AGAP012804-PA n=10 Tax=Endopterygota RepID=Q7PD3... 65 8e-10 UniRef50_Q9Y3B8 Oligoribonuclease, mitochondrial n=17 Tax=Eutele... 65 9e-10 UniRef50_A5KRR8 Oligoribonuclease n=2 Tax=candidate division TM7... 58 9e-08 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 58 1e-07 Sequences not found previously or not previously below threshold: UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 68 9e-11 UniRef50_A6VD64 Oligoribonuclease n=25 Tax=Proteobacteria RepID=... 67 2e-10 UniRef50_Q4SLB2 Chromosome 7 SCAF14557, whole genome shotgun seq... 65 9e-10 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 64 2e-09 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 63 3e-09 UniRef50_Q9ZVE0 Oligoribonuclease n=4 Tax=Embryophyta RepID=ORN_... 63 3e-09 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 63 4e-09 UniRef50_A3JF32 Oligoribonuclease n=3 Tax=cellular organisms Rep... 63 4e-09 UniRef50_Q14JL3 Oligoribonuclease n=21 Tax=Gammaproteobacteria R... 62 5e-09 UniRef50_Q31HZ4 Oligoribonuclease n=12 Tax=Gammaproteobacteria R... 62 6e-09 UniRef50_Q7XVQ9 OSJNBa0079M09.9 protein n=11 Tax=Magnoliophyta R... 62 6e-09 UniRef50_Q13VF8 Oligoribonuclease n=293 Tax=Bacteria RepID=ORN_B... 61 1e-08 UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 61 1e-08 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 60 3e-08 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 60 3e-08 UniRef50_Q47VZ4 Oligoribonuclease n=73 Tax=cellular organisms Re... 60 3e-08 UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 59 4e-08 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 59 4e-08 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 59 4e-08 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 59 4e-08 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 59 4e-08 UniRef50_UPI00015B5BB5 PREDICTED: similar to ENSANGP00000010833 ... 59 5e-08 UniRef50_Q5P0T5 Oligoribonuclease n=18 Tax=Proteobacteria RepID=... 58 6e-08 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 58 7e-08 UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 58 8e-08 UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D... 58 1e-07 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 58 1e-07 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 58 1e-07 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 58 1e-07 UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium El... 58 1e-07 UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 T... 57 1e-07 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 57 2e-07 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 57 2e-07 UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase II... 57 2e-07 UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27... 57 2e-07 UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 57 2e-07 UniRef50_Q9VCI0 Probable oligoribonuclease n=4 Tax=Drosophila Re... 57 2e-07 UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0... 57 2e-07 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 56 2e-07 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 56 3e-07 UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caul... 56 3e-07 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 56 3e-07 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 56 3e-07 UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candi... 56 3e-07 UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease do... 56 3e-07 UniRef50_C4LJX7 Putative oligoribonuclease n=1 Tax=Corynebacteri... 56 3e-07 UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrob... 56 3e-07 UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodo... 56 3e-07 UniRef50_B7Q099 YJER protein, putative (Fragment) n=1 Tax=Ixodes... 56 4e-07 UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagi... 56 4e-07 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 56 4e-07 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 56 4e-07 UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brev... 56 4e-07 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 56 4e-07 UniRef50_Q87E07 Oligoribonuclease n=123 Tax=Bacteria RepID=ORN_X... 56 5e-07 UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ru... 55 5e-07 UniRef50_UPI0001792A17 PREDICTED: similar to small fragment nucl... 55 6e-07 UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micr... 55 6e-07 UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dich... 55 7e-07 UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella... 55 7e-07 UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 512... 55 7e-07 UniRef50_A1VGE3 Exonuclease, RNase T and DNA polymerase III n=4 ... 55 7e-07 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 55 8e-07 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 55 8e-07 UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acho... 55 8e-07 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 55 8e-07 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 55 8e-07 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 55 9e-07 UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum cen... 55 9e-07 UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycopla... 55 1e-06 UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curviba... 55 1e-06 UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive... 55 1e-06 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 55 1e-06 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 54 1e-06 UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delt... 54 1e-06 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 54 1e-06 UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Molli... 54 1e-06 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 54 1e-06 UniRef50_Q4UVB0 Oligoribonuclease n=29 Tax=Bacteria RepID=ORN_XANC8 54 1e-06 UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacill... 54 1e-06 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 54 1e-06 UniRef50_UPI00015B53D6 PREDICTED: similar to ENSANGP00000010833 ... 54 1e-06 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 54 1e-06 UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Provide... 54 2e-06 UniRef50_D1NUV9 Oligoribonuclease n=3 Tax=Bifidobacterium RepID=... 54 2e-06 UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methy... 54 2e-06 UniRef50_Q6A786 Oligoribonuclease n=38 Tax=cellular organisms Re... 54 2e-06 UniRef50_Q0RPW6 Oligoribonuclease n=9 Tax=Actinomycetales RepID=... 54 2e-06 UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=... 54 2e-06 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 54 2e-06 UniRef50_B6JVJ0 Oligoribonuclease n=1 Tax=Schizosaccharomyces ja... 54 2e-06 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 54 2e-06 UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2... 54 2e-06 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 54 2e-06 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 53 2e-06 UniRef50_C1C170 Oligoribonuclease, mitochondrial n=2 Tax=Caligus... 53 2e-06 UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gam... 53 2e-06 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 53 2e-06 UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blatt... 53 2e-06 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 53 2e-06 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 53 3e-06 UniRef50_C4R594 RNA exonuclease, required for U4 snRNA maturatio... 53 3e-06 UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putati... 53 3e-06 UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 T... 53 3e-06 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 53 3e-06 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 53 3e-06 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 53 3e-06 UniRef50_Q5KPH7 Oligoribonuclease, putative n=3 Tax=Agaricomycot... 53 3e-06 UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=... 53 3e-06 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 53 3e-06 UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 ... 53 3e-06 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 53 3e-06 UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Beta... 53 3e-06 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 53 3e-06 UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flav... 53 3e-06 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 53 3e-06 UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natr... 53 3e-06 UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actin... 53 4e-06 UniRef50_UPI0000DB7BA5 PREDICTED: similar to Probable oligoribon... 53 4e-06 UniRef50_Q89A34 Oligoribonuclease n=1 Tax=Buchnera aphidicola (B... 53 4e-06 UniRef50_B7GR95 Exonuclease, RNase T and DNA polymerase III n=1 ... 53 4e-06 UniRef50_B3P8E1 GG12405 n=2 Tax=Endopterygota RepID=B3P8E1_DROER 53 4e-06 UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Baci... 53 4e-06 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 53 4e-06 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 52 5e-06 UniRef50_Q8B5Y0 Putative oligoribonuclease n=1 Tax=Diachasmimorp... 52 5e-06 UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruege... 52 5e-06 UniRef50_A4QGM5 Oligoribonuclease n=16 Tax=Corynebacterium RepID... 52 5e-06 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 52 5e-06 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 52 5e-06 UniRef50_C1YH96 DNA polymerase III epsilon subunit-like 3'-5' ex... 52 5e-06 UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 52 5e-06 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 52 5e-06 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 52 5e-06 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 52 5e-06 UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrio... 52 6e-06 UniRef50_UPI00005A0A92 PREDICTED: similar to small fragment nucl... 52 6e-06 UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive... 52 6e-06 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 52 6e-06 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 52 6e-06 UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellov... 52 6e-06 UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chel... 52 6e-06 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 52 6e-06 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 52 6e-06 UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 ... 52 7e-06 UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit... 52 7e-06 UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit... 51 8e-06 UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiacea... 51 8e-06 UniRef50_C4Y8A3 Putative uncharacterized protein n=1 Tax=Clavisp... 51 8e-06 UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polyme... 51 8e-06 UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Coryn... 51 8e-06 UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsi... 51 8e-06 UniRef50_B8GE83 Exonuclease RNase T and DNA polymerase III n=1 T... 51 8e-06 UniRef50_A0PU74 Oligoribonuclease n=72 Tax=Bacteria RepID=ORN_MYCUA 51 9e-06 UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exon... 51 9e-06 UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit... 51 1e-05 UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neor... 51 1e-05 UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 T... 51 1e-05 UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostri... 51 1e-05 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 51 1e-05 UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_P... 51 1e-05 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 51 1e-05 UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms Rep... 51 1e-05 UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 T... 51 1e-05 UniRef50_B5JFP7 Exonuclease superfamily n=1 Tax=Verrucomicrobiae... 51 1e-05 UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Ba... 51 1e-05 UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Strepto... 51 1e-05 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 51 1e-05 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 51 1e-05 UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR 51 1e-05 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 51 1e-05 UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokd... 51 1e-05 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 51 1e-05 UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Perse... 51 1e-05 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 51 1e-05 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 51 1e-05 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 51 1e-05 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 51 1e-05 UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 51 1e-05 UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Strep... 51 1e-05 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 51 1e-05 UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 51 1e-05 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 51 1e-05 UniRef50_Q5YSF0 Putative DNA polymerase n=1 Tax=Nocardia farcini... 51 1e-05 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 51 1e-05 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 61/89 (68%), Positives = 68/89 (76%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M +PTFL+HDYETFG P DRPAQFAAIRTDS+FN +GEP FYCKPADD+LP P Sbjct: 1 MAQGKTEPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARIHS 89 A LITGITPQ AR +G E FAARIH+ Sbjct: 61 QACLITGITPQAARRRGLAEIEFAARIHA 89 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 52/87 (59%), Positives = 69/87 (79%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + +QP+ L+HDYET+G +P D+P+QFA IRTD + N+IGEPE+FYC P DYLP P A Sbjct: 8 NNTEQPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEA 67 Query: 63 VLITGITPQEARAKGENEAAFAARIHS 89 L+TGITPQ+A+ +G +EA FAARIH+ Sbjct: 68 CLVTGITPQKAQREGLSEAEFAARIHT 94 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 56/86 (65%), Positives = 67/86 (77%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 +K TF F+DYE+FG PALDRPAQFA IRTDS+FN+IGEP +FYCK DYLP P AV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 64 LITGITPQEARAKGENEAAFAARIHS 89 ++TGITPQ+ A+G E FAARIH+ Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHA 86 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 84/89 (94%), Positives = 85/89 (95%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M D +Q TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP Sbjct: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 Query: 61 GAVLITGITPQEARAKGENEAAFAARIHS 89 GAVLITGITPQEARAKGENEAAFAARIHS Sbjct: 62 GAVLITGITPQEARAKGENEAAFAARIHS 90 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 48/83 (57%), Positives = 60/83 (72%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 Q TF +HDYET+G +PA+DRP+QFA +RTD + N+IGEP V YCKP +D P P A L+ Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 66 TGITPQEARAKGENEAAFAARIH 88 TG+TPQE AKG E F +IH Sbjct: 61 TGLTPQETLAKGVTEREFIKQIH 83 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 55/87 (63%), Positives = 63/87 (72%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MT + TFL+HDYETFGT+ DRPAQFAAIRTD+E NVIG P + YC+PA D+LP P Sbjct: 1 MTPSPSHHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARI 87 A LITGITPQ KG E FAA+I Sbjct: 61 QACLITGITPQLCLEKGIPEYQFAAQI 87 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 126 bits (318), Expect = 1e-28, Method: Composition-based stats. Identities = 41/84 (48%), Positives = 51/84 (60%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + ++DYET G +P DRP Q A IRTD N IG P YC+PADD LP P A L+ Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 66 TGITPQEARAKGENEAAFAARIHS 89 TGITP+ +G EA F R+H+ Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHA 84 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 40/80 (50%), Positives = 49/80 (61%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + ++DYET G +P DRP Q A IRTD N I EP YC+P+DD LP P A +ITGI Sbjct: 25 SLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITGI 84 Query: 69 TPQEARAKGENEAAFAARIH 88 TP +G EA F R+H Sbjct: 85 TPGRLAEQGLGEADFMTRVH 104 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 45/86 (52%), Positives = 59/86 (68%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 + +F + D+ET GT PA DRP QFA IRTD +FN IGEP +FYC+ A+D LPQP A Sbjct: 3 SSGPTSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEAC 62 Query: 64 LITGITPQEARAKGENEAAFAARIHS 89 L+TGI+PQ+A +G EA F + + Sbjct: 63 LLTGISPQDANREGLCEAEFMQAVEA 88 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 46/82 (56%), Positives = 53/82 (64%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 T +HDYET G +P DRP QFA +RTD N IG+P V YCKPA D LP P A L+TG Sbjct: 6 STLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTG 65 Query: 68 ITPQEARAKGENEAAFAARIHS 89 ITPQ A +G E F A IH+ Sbjct: 66 ITPQMAATRGLPEPEFIALIHA 87 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 50/85 (58%), Positives = 62/85 (72%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 + +Q T +HDYET+G PA+DRP QFA +RTD + N++GEP Y +PA D LP+P A Sbjct: 3 STEQITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEAC 62 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 LITGITPQEA AKG +EA F A IH Sbjct: 63 LITGITPQEAEAKGVSEADFIAAIH 87 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 49/81 (60%), Positives = 59/81 (72%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P+F ++D ETFGT PA DR AQFA +RTD EFN IG P+V YC+P+DD +P P A L+TG Sbjct: 5 PSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTG 64 Query: 68 ITPQEARAKGENEAAFAARIH 88 ITPQ A G E+AF A IH Sbjct: 65 ITPQYAAELGVPESAFIATIH 85 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 48/84 (57%), Positives = 52/84 (61%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 T +HDYETFG P DRPAQFA +RTD + N IGEP V Y KP DY+P P A Sbjct: 1 MSSSETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDAC 60 Query: 64 LITGITPQEARAKGENEAAFAARI 87 LITGITPQ A A G EA F I Sbjct: 61 LITGITPQAALAAGVPEADFIKAI 84 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 48/84 (57%), Positives = 57/84 (67%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 TF +HDYETFG PA DRP+QFA +RTD + N+IGEP V Y +P DY+P P A Sbjct: 1 MSSSETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDAC 60 Query: 64 LITGITPQEARAKGENEAAFAARI 87 LITGITPQ A A+G EA F + I Sbjct: 61 LITGITPQTALAEGVVEAQFMSTI 84 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 51/84 (60%), Positives = 61/84 (72%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 K P FLF+DYETFG H ALD+PAQFA IRTD N+I +P+ FYC P+DDYLP PG+VL Sbjct: 6 KKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVL 65 Query: 65 ITGITPQEARAKGENEAAFAARIH 88 IT ITPQ G NE F+ +I+ Sbjct: 66 ITHITPQYTEKNGTNEYNFSQKIY 89 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 62/85 (72%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 + FLF+DYETFG H +LD+PAQF++IRTD FN++ EP+ FYC P+DDYLP P ++ Sbjct: 6 KKNEVNFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSI 65 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 LITGITP+ G NE F+ +IH Sbjct: 66 LITGITPEYTEKHGFNEYKFSKKIH 90 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 47/85 (55%), Positives = 57/85 (67%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + QPTF +HDYET+G P +DRPAQFA +RT +F +G P Y +P D+LP P A Sbjct: 7 NNKNQPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEA 66 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 VLITGITPQ A +G NEA FA I Sbjct: 67 VLITGITPQYALNQGVNEANFAQAI 91 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 +FLF+D ETFG P R +Q+AAIRTD++ N I P F+ +PADD LP P A L+ Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 66 TGITPQEARAKGENEAAFAARIH 88 TGITPQ+A A+G +EA RI+ Sbjct: 61 TGITPQQALAEGISEAEAFDRIN 83 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 42/82 (51%), Positives = 54/82 (65%), Gaps = 1/82 (1%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 TF ++DYETFG P +DR +QFA IRTD FN++ E ++FYCKP +D L P LITG Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITG 60 Query: 68 ITPQEARAKGENEAAFAARIHS 89 I+PQ KG E F +IH+ Sbjct: 61 ISPQLCEQKGMIEHKFIKKIHA 82 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 47/86 (54%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 D TF F+D ET G P DR QFA RT + + IGEP + DD LP P AV Sbjct: 3 KDMAETFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPSPDAV 62 Query: 64 LITGITPQEARAKGENEAAFAARIHS 89 ++TGITPQ+ +G EA F H+ Sbjct: 63 MVTGITPQKTHEEGIAEAEFIKLFHN 88 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 48/85 (56%), Positives = 56/85 (65%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 D +FLF+D ETFG P R AQFAA+RTD+ N I EP F+ +PADD LP P A Sbjct: 11 DATMPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPVA 70 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 LITGITPQ+A +G NEA ARI Sbjct: 71 TLITGITPQQALREGINEADAFARI 95 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 62/87 (71%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 + TFLF+DYETFG +PALD+P+QF+ I+TD +FN+IG + +C P+ DYLP P + Sbjct: 4 QKNTSLTFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPES 63 Query: 63 VLITGITPQEARAKGENEAAFAARIHS 89 VLITGI+P+ G NE FA +I+S Sbjct: 64 VLITGISPKYTSLFGVNEFEFAKKIYS 90 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 49/83 (59%), Positives = 57/83 (68%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV I Sbjct: 1 MTNHFVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFI 60 Query: 66 TGITPQEARAKGENEAAFAARIH 88 TGITPQ+A G EA F+ RIH Sbjct: 61 TGITPQKALRDGVVEAEFSRRIH 83 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 61/87 (70%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M K+PTFL +DYETFG +PALDRPAQFA+IR ++ + + EVF+C+ +DYLP P Sbjct: 1 MLSNIKKPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARI 87 +VLITGITP + + G E FA +I Sbjct: 61 ESVLITGITPYDTLSNGLLEPQFAYQI 87 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 44/82 (53%), Positives = 49/82 (59%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 +FLFHDYET+G P D P QFAAIRTD EP K DYLP P AVL+T Sbjct: 5 PASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVT 64 Query: 67 GITPQEARAKGENEAAFAARIH 88 GITPQ A+GE E F +IH Sbjct: 65 GITPQMTLAEGEYEYTFMQKIH 86 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 43/82 (52%), Positives = 53/82 (64%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 +FLF+D ETFG P R AQFAA+RTD++ VI EP F+ +PADD LP P A ++ Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 66 TGITPQEARAKGENEAAFAARI 87 T ITPQ A +G EA ARI Sbjct: 61 TAITPQHALREGVTEAEAFARI 82 >UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y2_BUCCC Length = 475 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 54/88 (61%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + + +F+DYETFG + ALD+ +QF +I TD++F+ I + + +C P DYLP P Sbjct: 1 MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDP 60 Query: 61 GAVLITGITPQEARAKGENEAAFAARIH 88 A+LIT I PQ G NE + +IH Sbjct: 61 EAILITKILPQYTYKYGLNEYFLSKKIH 88 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 39/88 (44%), Positives = 57/88 (64%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + P++L++DYET+GT P+ DR AQFAA+RTD + N+I EP +CKP D + PG Sbjct: 3 NNATHPPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPG 62 Query: 62 AVLITGITPQEARAKGENEAAFAARIHS 89 AV IT ++P E G +E F+ +H+ Sbjct: 63 AVQITRLSPLELEQTGLSEWEFSQAVHN 90 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +FLF+D+ET G+ P DRP QFAA+RT+ E I P Y + + LP P AVL+TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 69 TPQ-EARAKGENEAAFAARIHS 89 PQ A + G EA FAA IH+ Sbjct: 62 LPQTLASSGGRPEAEFAALIHA 83 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 43/85 (50%), Positives = 55/85 (64%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 +F +HDYET G + DRP QFA +RTD FNVI EP V YC+P+ D L P A+ Sbjct: 1 MSSSESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAI 60 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 +TGI+P +A A+G NE AF A+I Sbjct: 61 RVTGISPYKALAEGANEGAFMAKIQ 85 >UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW Length = 482 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 T LF+D ET G + + D+ QFAAIRTD +FN I E F+ K D P P A Sbjct: 1 MFSNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEI-ERFNFFVKLNPDTTPSPMAT 59 Query: 64 LITGITPQEARAKGENEAAFAARIHS 89 + I+ +A G E +IH Sbjct: 60 ITHHISIAQA-NTGIAEYQAIRKIHK 84 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 ++ + T+LF+D ET G + D+ QFAAIRTD N + + D +P P A+ Sbjct: 2 SNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRH-EILIRLNPDVIPSPEAM 60 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 +I + + + G+ E IH Sbjct: 61 IIHRFSIDQMLS-GKAEIEAIREIH 84 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 TFLF+D ET G +PA D+ FAAIRTD E I +D +P PGA + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRT-SIVISLRNDIVPSPGAFITHR 60 Query: 68 ITPQEARAKGENEAAFAARIH 88 +TP++ + G E A IH Sbjct: 61 LTPEDLKD-GLCEYQGVALIH 80 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G PA D+P QFAAI TD F C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVT 61 Query: 70 PQEARAKGENE-AAFAARI 87 P + F+ ++ Sbjct: 62 PDQLTDPSLPSLFEFSQQV 80 >UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTJ0_9SPHI Length = 487 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K +F+D + G +P D+ + TD FN++ E K D +P P A++ Sbjct: 19 KNKNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLL-ETHHIEIKKRPDVVPSPEALIA 77 Query: 66 TGITPQEARAKGENEAAFAARIH 88 P + AKG E IH Sbjct: 78 NNWLPSDL-AKGSTEYEAMRHIH 99 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G P D+P QFAAI TD F C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRVT 61 Query: 70 PQEARAKGENE-AAFAARI 87 P + F+ ++ Sbjct: 62 PDQLIDPSLPSLFEFSQQV 80 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 91.1 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F+D ET G D+ QFAAI TD + N + C+ +P P A+L ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDR-FELRCRLQPHVVPHPKAMLANRLS 61 Query: 70 PQEARAKGEN-EAAFAARI 87 + I Sbjct: 62 IERLTDLSLPSHYDMVREI 80 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F F D ET GT PA D+P QFA I TD + E C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEV-ERIDIRCRLSPHILPAPWALAVTGVS 60 Query: 70 PQEARAKGENEA-AFAARIHS 89 P A F+ + S Sbjct: 61 PGMLSNPNLPSAFEFSQEVSS 81 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 84.6 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 2/80 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+F D ET G D+ FAAIRTD++ N + +P P A+ ++ Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDR-FEVRSRLLPHVVPHPSALRTNRLS 61 Query: 70 PQEARAKGEN-EAAFAARIH 88 + I Sbjct: 62 IERLIDGTLPSHYEMVRAIQ 81 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + F+ D ET G DR + AIR F E E F + Sbjct: 1 MDKSLWDSGFVAIDVETTGLSNRWDRIVEIGAIR----FTPGSETESFQTFVSPGRPIPS 56 Query: 61 GAVLITGITPQEAR-AKGENEAAFA 84 AV I GIT + A G +EA+ A Sbjct: 57 EAVAIHGITDEMVEGAPGLSEASIA 81 >UniRef50_Q83GA7 Oligoribonuclease n=2 Tax=Tropheryma whipplei RepID=ORN_TROWT Length = 184 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M ++ D E G +P D + A + TD + + E P+ + L Sbjct: 1 MCVAPTPSHLVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEALGAM 60 Query: 61 GAVL-----ITGITPQEARAKGENEAAFAAR 86 + ++G+ + + +EA + Sbjct: 61 DNYVARMHRVSGLLDELSNGVPVSEAQAMVK 91 >UniRef50_C0DYM7 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYM7_EIKCO Length = 238 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 6/91 (6%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 T + D E G +P DR + A + TD++ N++ + E + +D+ L Sbjct: 46 TPKPNPLNLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEGMD 105 Query: 62 AVLI-----TGITPQEARAKGENEAAFAARI 87 A TG+T Q + +EA R+ Sbjct: 106 AWNTSTHERTGLT-QRVKDSTLSEAEVEQRL 135 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 79.2 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 52/52 (100%), Positives = 52/52 (100%) Query: 38 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS 89 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHS 175 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 78.4 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIR---TDSEFNVIGEPEVFYCKPADDYLPQPGA 62 K +F D ET G + + AAIR T+ + + + K + Sbjct: 10 KYKAVVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQKI 69 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 V +TGIT ++ +G EA AAR Sbjct: 70 VELTGITDEQLENEGITEAEAAARF 94 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 K +++ D ET G P +F A+ + + +GE F+ KP Sbjct: 419 NFKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDL-KVGEVTQFFIKPQ--AKIGAFTT 475 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 +TGIT Q ++G + RI+ Sbjct: 476 ELTGITQQMLDSEGLSIKDGLQRIY 500 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 ++F+D+ET G D+ Q AI + F+++ C +P+PGA+L+ Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDR-FEARCSLKPGTVPEPGALLVNKT 60 Query: 69 TPQEARAKGENEAAFAA 85 TP + + Sbjct: 61 TPDMLKKTNLSHFGMVQ 77 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 2/78 (2%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 +F D ET G P D+ + AA N I +CK + V +T Sbjct: 5 KKIVFFDTETTGLDPEKDQIIELAAALVTE--NGIELKIDAFCKLPEGEKIPEKIVELTH 62 Query: 68 ITPQEARAKGENEAAFAA 85 IT KG + Sbjct: 63 ITDDMLADKGIDYREACR 80 >UniRef50_UPI000186E428 oligoribonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E428 Length = 196 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GAVLITG 67 +++ D E G +P D + A I T+ + N + E F D+ L L+ Sbjct: 23 YIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNEWCLVHH 81 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + Q +F D ET G +P DR + I+ + G+ ++ + + A Sbjct: 4 NLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPD----GKRDIKTRRVNPEKPISSEASE 59 Query: 65 ITGITPQEARAKGENEAAFAARIHS 89 ITGIT ++ + + A I+ Sbjct: 60 ITGITDEDVKDEP-TFKQMAKGIYK 83 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 T++ D ET G P + +F A ++ +I E F+ KP P I Sbjct: 401 SSQTYVVFDLETTGLSPRFNEIIEFGASIIEN--GIIKESHQFFIKPTK--PIPPSITEI 456 Query: 66 TGITPQEARAKGENEAAFAARIH 88 T IT A G ++ +I+ Sbjct: 457 TKITD-NTVANGYSQEEGVRKIY 478 >UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chloroflexaceae RepID=A5UUT9_ROSS1 Length = 233 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G +P D + D + + +P DD P A+ + G+ Sbjct: 38 YSVIDVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLL 97 Query: 70 PQEARAKGEN 79 PQ+ Sbjct: 98 PQDVEQAPPP 107 >UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Actinomycetales RepID=Q47TJ3_THEFY Length = 250 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G + DR A I T ++ + P AV I GI+ Sbjct: 16 LVGFDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWL---VNPGVEIPPEAVAIHGIS 72 Query: 70 PQEARAKGENEAAFAARI 87 + A A G A I Sbjct: 73 TELAVADGIPAPVAVAEI 90 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 4/65 (6%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F D ET G P DR + AA+R D + G F AV + IT Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRD----GSLSRFQSLVNPGVRIPAQAVAVHHIT 64 Query: 70 PQEAR 74 Sbjct: 65 DDMVA 69 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 3/79 (3%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 F+ D ET G + AIR + N + F +T Sbjct: 49 PERFVVFDIETTGLDSERHEILEIGAIRVNRNSN---NHDTFQVLVKPSRKVPKKITELT 105 Query: 67 GITPQEARAKGENEAAFAA 85 GITP+ A+G + + Sbjct: 106 GITPEMIEAEGVSLESAVQ 124 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G DR + I + F G Y P D + P A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINPGDQKV-HPDALAVHGITD 61 Query: 71 QEARAKGENEAAFAARI 87 + + K + A A I Sbjct: 62 EFLKDK-KPFAEVAEEI 77 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 L+ D ET G P QFA + V+ E +P + + + A+ ++G Sbjct: 2 KKVLWFDLETTGIDPDRHGIIQFAGLAEIE--GVVAESFEIKMQPHEGAMIEDEALAVSG 59 Query: 68 ITPQEARAKGENEAAFAARI 87 + ++ + A I Sbjct: 60 FSREQIASF-TPHAEAYKAI 78 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K T++ D ET G P D +F A + + + + F+ KP + LI Sbjct: 396 KNETYVVFDLETTGLSPIFDDIIEFGAQKILN--GKVIDTLQFFVKPNKE--ISEKITLI 451 Query: 66 TGITPQEARAKGENEAAFAARI 87 TGI Q+ +E +I Sbjct: 452 TGIKNQDVE-NAISEKEALKKI 472 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + + D ET G P D+ + AAIRTD G P V + Sbjct: 1 MREIYTVFDLETTGLDPTKDQITEIAAIRTDL-IREYGR-LDIRITKNSGTKLTPEIVNL 58 Query: 66 TGITPQEARAKGENEAAFA 84 TGI+ + G E Sbjct: 59 TGIS-ESMMRGGVPEPVAI 76 >UniRef50_A6VD64 Oligoribonuclease n=25 Tax=Proteobacteria RepID=ORN_PSEA7 Length = 180 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 6/86 (6%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 ++ D E G P D + A I TDS+ N + E V ++ L Sbjct: 3 NPQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEVLAGMDEWNT 62 Query: 66 -----TGITPQEARAKGENEAAFAAR 86 +G+T Q R + A A+ Sbjct: 63 RQHGQSGLT-QRVRESTVSMAEAEAQ 87 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 L D ET G +P +DR + AAI+ D N Y +D +TGITP Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNK--SVMDEYISLPNDICYPENVQEMTGITP 59 Query: 71 QEARAKGENEAAFA 84 + KG E A Sbjct: 60 EILELKGHPEEEIA 73 >UniRef50_A4NXF4 Oligoribonuclease n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NXF4_HAEIN Length = 115 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GA 62 + + ++ D E G P +R + A I TD N++ E V +D+ L + Sbjct: 2 SFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDW 61 Query: 63 VLITGI---TPQEARAKGENEAAF 83 T + +A E A Sbjct: 62 CQKTHSENGLIERVKASKLTERAA 85 >UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJC0_9BACT Length = 469 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 +F+D ET G + Q +I+T+ ++ E + C P +P P A++ Sbjct: 4 SSNLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHE-QNLGCAPLPWAIPYPMAMVTN 62 Query: 67 GITPQEARAKGENEAAFAA 85 T + Sbjct: 63 KKT--NLFHSNVSHYELMR 79 >UniRef50_A5UFF2 Oligoribonuclease n=25 Tax=cellular organisms RepID=ORN_HAEIG Length = 182 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 4/84 (4%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GA 62 + + ++ D E G P +R + A I TD N++ E V +D+ L + Sbjct: 2 SFDKQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELLNKMNDW 61 Query: 63 VLITGI---TPQEARAKGENEAAF 83 T + +A E A Sbjct: 62 CQKTHSENGLIERVKASKLTERAA 85 >UniRef50_Q7PD30 AGAP012804-PA n=10 Tax=Endopterygota RepID=Q7PD30_ANOGA Length = 228 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M++T Q ++ D E G DR + A I TDS+ N+I + D L Sbjct: 38 MSETSVQ-NLVWIDLEMTGLDVEKDRILEIACIVTDSKLNIIAKGPNIIINEPDAVLAGM 96 Query: 61 GAV 63 + Sbjct: 97 NSW 99 >UniRef50_Q9Y3B8 Oligoribonuclease, mitochondrial n=17 Tax=Euteleostomi RepID=ORN_HUMAN Length = 237 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GAVL 64 ++ D E G D+ + A + TDS+ N++ E K D+ L Sbjct: 39 MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98 Query: 65 ITG 67 Sbjct: 99 EHH 101 >UniRef50_Q4SLB2 Chromosome 7 SCAF14557, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SLB2_TETNG Length = 248 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 20/93 (21%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP----- 60 ++ D E G D+ + A + TDS+ N++ E D+ L Sbjct: 2 MSQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIINQPDELLDGMSEWCK 61 Query: 61 ---------GAVLITGITPQEARAKGENEAAFA 84 AV + IT ++A E F Sbjct: 62 EHHGKSGLTQAVRNSKITLEQA------EYEFL 88 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 T++ D ET G PA DR + AA+R F P +T Sbjct: 3 PQTYVVLDVETTGLDPARDRIIEIAAVR----LEGGNITRQFQTLVNPGRPIPPAIERLT 58 Query: 67 GITPQEA-RAKGENE 80 GI+ A E Sbjct: 59 GISDAMVREAPPLPE 73 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P D A+ ++ ++ + +P P ++ + +T Sbjct: 38 YTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLT 97 Query: 70 PQEARAKGENEAAFAARI 87 P+E R A A + Sbjct: 98 PEELRDAP-PPAEVLAEL 114 >UniRef50_Q9ZVE0 Oligoribonuclease n=4 Tax=Embryophyta RepID=ORN_ARATH Length = 222 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 6/92 (6%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 + D D + ++ D E G + +DR + A I T+ + E + D L + Sbjct: 37 LEDGDYKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKM 96 Query: 61 -GAVLIT----GITPQEARAKGENEAAFAARI 87 G+T ++ E ++ Sbjct: 97 DDWCQTHHGASGLT-KKVLLSAITEREAEQKV 127 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 4/84 (4%) Query: 6 KQPTFLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 +F+ D ET G P D Q A +R + + GE P + Sbjct: 490 SDLSFVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLV--NPGRPIPPASTR 547 Query: 65 ITGITPQEARAKGENEAAFAARIH 88 + I+ + + R H Sbjct: 548 VHHISDDMVQDAP-DIIEAGRRFH 570 >UniRef50_A3JF32 Oligoribonuclease n=3 Tax=cellular organisms RepID=A3JF32_9ALTE Length = 180 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI---- 65 ++ D E G P +R + A + TDSE N+I E V +D + Sbjct: 7 LVWIDLEMTGLDPEQERIIEMATLITDSELNLIAEGPVLAVHQSDTLMGAMDEWCTRTHG 66 Query: 66 -TGITPQEARAKGENEAAFAAR 86 +G+T Q +EA + Sbjct: 67 ESGLT-QRVTDSRISEAEAEQQ 87 >UniRef50_Q14JL3 Oligoribonuclease n=21 Tax=Gammaproteobacteria RepID=ORN_FRAT1 Length = 178 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI--- 65 ++ D E G + + AAI TD + N+I E E D+ L I Sbjct: 6 NLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLANMNEWCIKTH 65 Query: 66 --TGITPQEARAKGENEAAFAARI 87 TG+T Q + + A +I Sbjct: 66 TETGLT-QRVKDSKISTEAAEQQI 88 >UniRef50_Q31HZ4 Oligoribonuclease n=12 Tax=Gammaproteobacteria RepID=ORN_THICR Length = 184 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 + ++ D E G D+ + A + TD+E NV+ E V + YL A Sbjct: 1 MKSENNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYLDGMDAW 60 Query: 64 LITG 67 T Sbjct: 61 CTTH 64 >UniRef50_Q7XVQ9 OSJNBa0079M09.9 protein n=11 Tax=Magnoliophyta RepID=Q7XVQ9_ORYSJ Length = 249 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 4/90 (4%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP- 60 + +D ++ D E G DR + A I TD + E + + + + Sbjct: 63 SSSDYDKPLVWIDLEMTGLDITKDRILEIACIITDGKLTKRIEGPDLVIRQSKECVNDMN 122 Query: 61 GAVLITGI---TPQEARAKGENEAAFAARI 87 + ++ +E ++ Sbjct: 123 EWCKVHHSASGLKEKVLQSDISENDAEKQV 152 >UniRef50_Q13VF8 Oligoribonuclease n=293 Tax=Bacteria RepID=ORN_BURXL Length = 207 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV-- 63 ++ D E G P DR + A + T+S + + E V +D+ L Sbjct: 16 SDMNLVWLDMEMTGLEPDSDRIIEIAVVVTNSTLDRMVEGPVLAIHQSDETLAGMDQWNQ 75 Query: 64 LITGIT--PQEARAKGENEAAFAARI 87 G + +A +EA +I Sbjct: 76 NTHGRSGLIDRVKASTVSEADATEQI 101 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 7/91 (7%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + + F+ D ET G +P D+ + A++ ++ F Sbjct: 413 MKEHSLEDDFVVFDIETTGLNPHQDKITEIGAVKV-RNGQIVDR---FSAFVNPGVSIPS 468 Query: 61 GAVLITGITPQEARAKGENEA---AFAARIH 88 V +TGIT + E F I Sbjct: 469 FIVKLTGITDDMVKDAPPVEQVLNEFMEFIQ 499 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 6 KQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 K TF+ D ET G HP+ D+ A +R + + GE ++ Sbjct: 215 KSLTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIV--NPGRPIPAESIR 272 Query: 65 ITGITPQEARAK 76 GIT K Sbjct: 273 YHGITDDMVVDK 284 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 T + D ET G P DR Q A +R + GE P P + + Sbjct: 450 DLTCVVFDTETTGLDPVADRIVQIAGLRIARG-RLTGERFDTLVDP--GRPIPPASTAVH 506 Query: 67 GITPQEAR 74 GIT Sbjct: 507 GITDAMVA 514 >UniRef50_Q47VZ4 Oligoribonuclease n=73 Tax=cellular organisms RepID=ORN_COLP3 Length = 181 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL--PQPGAV 63 ++ D E G P D + A I TDSE N++ + +F DD L P + Sbjct: 4 NDSNLIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPWCI 63 Query: 64 LITGIT--PQEARAKGENEAAFAAR 86 G + Q R + A Sbjct: 64 EHHGKSGLTQRCRDSEVSLAHATKE 88 >UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X4_9BACT Length = 268 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + + + D E+ G P DR + A ++ + G + + + P Sbjct: 2 MQNLQLERPLVVFDIESTGVMPQRDRIVEIAVLKIFPD----GHTQNTVRRLNPEMPIPP 57 Query: 61 GAVLITGITPQEARA 75 GA I GI+ + Sbjct: 58 GATAIHGISDADVAD 72 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P D A + + EVF P A + G+T Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHV--LGRRVLRQEVFEALVNPGRPISPAATAVHGLT 497 Query: 70 PQEARAKGENEA 81 + R K EA Sbjct: 498 AEMLRDKPPLEA 509 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P + D ET G + +R + AA+ +P P +P P V +TG Sbjct: 293 PCVVVFDLETTGLNKDRNRIIEIAAVNVSD---PTHQPMSTLVNPGRFAVPPP-VVALTG 348 Query: 68 ITPQEARAKGENEAAFAARI 87 IT A AA + Sbjct: 349 ITNAMVSAPAVPSFQRAAEL 368 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 7 QPTFLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 +F+ D E G +P D A +R + + GE PG+V Sbjct: 506 DLSFVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRII--NPGRPIPPGSVRF 563 Query: 66 TGITPQEARAKGENE 80 GIT + + K E Sbjct: 564 HGITDDDVQDKPPIE 578 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPAD---DYLPQPG-AVL 64 + D ET G P D + A+R V E +P + + +P P A Sbjct: 2 NVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQR 61 Query: 65 ITGITPQEARA 75 + GI+ + Sbjct: 62 VHGISDAMVQD 72 >UniRef50_UPI00015B5BB5 PREDICTED: similar to ENSANGP00000010833 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5BB5 Length = 188 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M++ ++ ++ D E G DR + A + TD N++ + +DD L + Sbjct: 1 MSNNQRRNRIVWIDMEMTGLAVESDRILEVACLITDENLNIVSDEFHQVLHQSDDELARM 60 Query: 61 -GAVLITGITPQEARAKGENEAA 82 A +++ Sbjct: 61 NEWCQEHHTKSGLVEASKKSQED 83 >UniRef50_Q5P0T5 Oligoribonuclease n=18 Tax=Proteobacteria RepID=ORN_AZOSE Length = 183 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV--L 64 Q ++ D E G P DR + A + TDS+ N + E V D L Sbjct: 5 QNHLIWLDMEMTGLQPDSDRIIEIAIVITDSQLNTVAEAPVIAVHQPDSVLDAMDEWNRN 64 Query: 65 ITGIT--PQEARAKGENEAAFAAR 86 G + +A EA A+ Sbjct: 65 THGKSGLTDRVKASLIGEADAEAQ 88 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 5/91 (5%) Query: 1 MTDTDKQP-TFLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 58 + +T TF+ D ET G P D Q AA+R + V GE Sbjct: 500 LAETPLDKLTFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLV--NPGRPI 557 Query: 59 QPGAVLITGITPQEARAKGENEAAFAARIHS 89 + + GIT + A A R H Sbjct: 558 PAASTAVHGIT-EAMVATAPAIAEVGRRFHK 587 >UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EUK5_MYCPE Length = 1458 Score = 58.4 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 5/86 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 T++ D ET G P D+ +F AI+ V E + Sbjct: 413 DTKISDATYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV----ESIQMFINPEEKISDK 468 Query: 62 AVLITGITPQEARAKGENEAAFAARI 87 IT I+ ++ + +I Sbjct: 469 IFAITKISNEDVKD-ALKIKEALVKI 493 >UniRef50_A5KRR8 Oligoribonuclease n=2 Tax=candidate division TM7 RepID=A5KRR8_9BACT Length = 184 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 7/87 (8%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 D K L+ D E G P DR + AAI TD F + + L Sbjct: 5 ADMKKHAKLLWLDLEMTGLDPQRDRVLEVAAIATDWNFEEMA-VIESVVHQSPKVLDLMD 63 Query: 62 AV-----LITGITPQEARAKGENEAAF 83 +G+T + RA +E Sbjct: 64 DWVRSQHASSGLT-ERVRASDVSETDA 89 >UniRef50_D0B846 Exonuclease n=51 Tax=Alphaproteobacteria RepID=D0B846_BRUME Length = 332 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 2/79 (2%) Query: 11 LFHDYETFGTHPALDRPAQFAAI--RTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + D ET G +PA + + A+ R + ++ F ITGI Sbjct: 74 VVVDTETTGLNPAQEEIIEIGAVAFRYADDGSIGDVCATFGALQQPSKPIPAEITRITGI 133 Query: 69 TPQEARAKGENEAAFAARI 87 T + + + A I Sbjct: 134 TDEMVKGRTIPRDELDALI 152 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 4/70 (5%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 T +P F D ET G + DR + AA+R DS FN I P + Sbjct: 15 TPGEPVFAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDS-WHTLLNPDGKAIKNSH-- 71 Query: 64 LITGITPQEA 73 I GIT Sbjct: 72 -IHGITNDMV 80 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + + TF+ D+ET G P +D + A++ + ++ E KP+ + Sbjct: 350 DSSFENATFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDE-YHTLIKPSRE--ISRR 405 Query: 62 AVLITGITPQEARAK 76 + ITGIT + K Sbjct: 406 SSEITGITQEMLENK 420 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 4/71 (5%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + + D ET G A DR Q + I+ D + N E + + + P Sbjct: 4 NLTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGN--EERKSLFV--NPEKPIPPFVQE 59 Query: 65 ITGITPQEARA 75 +T IT + Sbjct: 60 LTHITDDMVKD 70 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 TF+ D ET G P D Q A+R + I E EVF PG+ + Sbjct: 270 DLTFVVFDSETTGLDPHTDEVVQLGAVRVVN--GKIIEGEVFDTLVNPGRTIPPGSTAVH 327 Query: 67 GITPQEARA 75 I+ Sbjct: 328 QISDAMVAD 336 >UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XHY8_9BACT Length = 199 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 2/68 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 ++ D ET G D Q AA+R V+ + F+ Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVR--MSNGVVCSSDSFFSYVNPGRSISSFITSY 58 Query: 66 TGITPQEA 73 TGIT Q+ Sbjct: 59 TGITNQDV 66 >UniRef50_A7HHL1 Exonuclease RNase T and DNA polymerase III n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HHL1_ANADF Length = 238 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 TF D E G PA D A+R + V+ E KP + P+ +LI G+ Sbjct: 46 TFTVLDCEMTGLDPARDEILSIGAVRIRNGRIVMAERFYQVFKPTEAVSPK-EVILIHGL 104 Query: 69 TPQEARAKGENEAAFAARI 87 P E ++G R+ Sbjct: 105 GPDEV-SRGLPLGDALERL 122 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPA---DDYLPQPGAV 63 T++ D ET G P D+ + A+ + G +P + P Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTA--GKRGRTFSTLLQPRTPLEGQYVSPFIT 79 Query: 64 LITGITPQEARAKGEN 79 +TGIT + A + Sbjct: 80 RLTGITNEMLAAAPQP 95 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 TF+ D ET G DR + A++ E F L P IT Sbjct: 31 NTTFVVVDLETTGLSAHEDRIIEIGAVKIHGG----EEISRFSTFVDPGRLIPPLITNIT 86 Query: 67 GITPQEARAKGEN-EAAFAA 85 GI+ + G EA Sbjct: 87 GISDDDV--NGAPKEAQAVK 104 >UniRef50_UPI0001C31300 Exonuclease RNase T and DNA polymerase III n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31300 Length = 259 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 4/77 (5%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D ET G P DR AA+ + + + GA + GIT Sbjct: 7 FDIETTGIDPQSDRIVT-AAVSLAGDARPTVDHDWL---VDPGVEIPAGATAVHGITTDH 62 Query: 73 ARAKGENEAAFAARIHS 89 ARA+G A I + Sbjct: 63 ARAEGRASAEAVEEITA 79 >UniRef50_C1AA06 Exonuclease n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AA06_GEMAT Length = 323 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPA------DDYLPQPGAVL 64 L D ET G A D +F A+ D + GE V+ P A Sbjct: 50 LVVDVETTGLDTARDVIIEFGAVPFDFD----GEGRVYTVHPPLSYFEDPGRPIPAEASA 105 Query: 65 ITGITPQEARAKGENEAAFAARI 87 ITGIT + R K ++AA A + Sbjct: 106 ITGITDDDVRGKRIDDAAVLAAL 128 >UniRef50_A9KR66 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR66_CLOPH Length = 235 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 5/79 (6%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 FL D E+ G P DR + AAIR E F +TGI Sbjct: 2 NFLAIDIESTGLSPEKDRIIEIAAIRYIDG----KPKERFEKLINPGCPLPERITELTGI 57 Query: 69 TPQEARAKGENEAAFAARI 87 T ++ A E Sbjct: 58 T-EDMLAGAMTEREVIKEF 75 >UniRef50_Q9VCI0 Probable oligoribonuclease n=4 Tax=Drosophila RepID=ORN_DROME Length = 211 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GAVLITG 67 ++ D E G D+ + A I TD + NV E F + + Sbjct: 38 IVWMDLEMTGLDIEKDKILEVACIITDQDLNVKSEGPCFAINHPQEVYDSMNEWCMKHH 96 >UniRef50_D0B3W0 DNA polymerase III n=51 Tax=Rhizobiales RepID=D0B3W0_BRUME Length = 234 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G DR + + + F G + P P A+ + GI+ Sbjct: 4 IVFDTETTGLERLEDRVIEIGGVELVNRF-PTGRTFHKFINPQ-GRQVHPDALAVHGISN 61 Query: 71 QEARAKGE 78 ++ K Sbjct: 62 EQLLDKPV 69 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 56.4 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 T++ D ET G P D +F A+ + IGE F+ KP Sbjct: 401 DQNLDNATYVIFDIETTGLFPNFDEIIEFGAVIMQNN-KQIGEKIQFFIKPIQQ--INEN 457 Query: 62 AVLITGITPQEARAKGENEAAFAARI 87 +T I+ + +E +I Sbjct: 458 VTNLTNISQEMV-NNAIDEKTALLKI 482 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 +F D ET G P + AAIR + V +P P A+ + G Sbjct: 2 QPLVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNG 61 >UniRef50_B4W5N5 DNA polymerase III, epsilon subunit n=2 Tax=Caulobacteraceae RepID=B4W5N5_9CAUL Length = 241 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 11 LFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P DR + I + G + + L P A+ + GIT Sbjct: 5 IVLDTETTGFDPKTGDRLIEVGCIEI-QDLLPTGRTFHRFV--NPERLIPPDAIRVHGIT 61 Query: 70 PQEARA 75 + + Sbjct: 62 DDKVKD 67 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+ D ET GT+ DR A+ + Y K + AV I GI Sbjct: 36 FVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQE---VFNEEAVAIHGIL 92 Query: 70 PQEARAKGENEAAFAARI 87 + + K +E Sbjct: 93 RENRKYKKVSEEEAVKAF 110 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 T++ D ET G +P D + A++T + VI E + +P ++ Sbjct: 377 NVDDYTYVVLDLETTGLNPRSDEIMEIGAVKT-RDGKVIDE-FHTFVRPNK---LNKKSL 431 Query: 64 LITGITPQEARA 75 ITGIT + Sbjct: 432 NITGITEDMLKD 443 >UniRef50_C6XFY8 DNA polymerase III subunit epsilon n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFY8_LIBAP Length = 245 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 3/76 (3%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M +K +F D ET G DR + A+ +++ + P P Sbjct: 1 MIRKNKMRKIVF-DIETTGLDSKNDRIIEIGAVEL-LDYSKTNRTFQVFLCPN-GRKNSP 57 Query: 61 GAVLITGITPQEARAK 76 A+ + GIT + + K Sbjct: 58 EALKLHGITDEFLKDK 73 >UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease domain n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0H1_9ZZZZ Length = 270 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D ET G +P DR Q+A I D + + + + E+ ++ + GI+ ++ Sbjct: 12 FDTETTGLNPRKDRILQYAFIGRDVDGSSVCQVELI----DPGIKIPEASMNVHGISNED 67 Query: 73 ARAKG 77 +G Sbjct: 68 VTGRG 72 >UniRef50_C4LJX7 Putative oligoribonuclease n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJX7_CORK4 Length = 222 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI---- 65 ++ D E G P+ + AAI TD+ N++ E DD L + + Sbjct: 25 IVWIDCEMTGLDPSTHVLVEIAAIVTDANLNILDEGLDIVIHATDDELAKMDDFVTQMHT 84 Query: 66 -TGITPQEARAK-GENEAA 82 G+T + ++ EA Sbjct: 85 KNGLTDEIRKSTVSVGEAE 103 >UniRef50_B9JNT5 Polymerase epsilon subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JNT5_AGRRK Length = 340 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 11 LFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFY-CKPADDYLPQPGAVLITGI 68 + D ET G + D + + T +F IG+ Y P +TGI Sbjct: 89 VILDTETTGLNHRNDEIIEIGLVAFTFDDFGHIGDVIGVYGGLQQPGTPIPPEITRLTGI 148 Query: 69 TPQEAR 74 T + Sbjct: 149 TDEMVE 154 >UniRef50_A8LQ52 DNA polymerase III subunit epsilon n=2 Tax=Rhodobacterales RepID=A8LQ52_DINSH Length = 485 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 3/76 (3%) Query: 1 MTDTDKQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 59 M ++ D ET G P D Q AA R + + + E+F Sbjct: 282 MDCKLGDLKYVIFDTETTGLLPERGDEVCQIAACRVVN--GKMVKTEMFDTLVNPGRPIP 339 Query: 60 PGAVLITGITPQEARA 75 A I GIT Sbjct: 340 LSATNIHGITDAMVAD 355 >UniRef50_B7Q099 YJER protein, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7Q099_IXOSC Length = 171 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 6/91 (6%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP- 60 ++ D E G + + A + TD + N++ E D+ L Sbjct: 29 AKAFCNNGLVWIDLELTGLELETCKIMEIACLVTDGQLNLLSEGIDIAIHQPDEVLEGMN 88 Query: 61 GAVLIT----GITPQEARAKGENEAAFAARI 87 G+T Q R R+ Sbjct: 89 DWCKEHHGKSGLT-QACRESSVTVEEAEQRV 118 >UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagibacter ubique RepID=Q4FND4_PELUB Length = 475 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 1/81 (1%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 D E+ + + + I D F + F C+ + +PQ A+++ Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDR-FNFRCRLPEGEVPQAMALIVNKT 60 Query: 69 TPQEARAKGENEAAFAARIHS 89 + + +++ + Sbjct: 61 SVDLLTKGNLSHYQMLSQLEA 81 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 + +F D ET GT DR Q A I+ ++ + + + P + Sbjct: 4 KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKERLI----NPTIPIPPEVTKVH 59 Query: 67 GITPQEARA 75 G++ + + Sbjct: 60 GVSDEMVKD 68 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + F+ D ET G + +F A+ + + E F+ KP P Sbjct: 406 FDKLKFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEI--EKHQFFIKPTGKIPPA--ITK 461 Query: 65 ITGITPQEARAKGENEAAFAARI 87 ITGI+ + + +I Sbjct: 462 ITGISQKMIDETAISWEIALEKI 484 >UniRef50_D0XIW2 DNA polymerase III, epsilon subunit n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XIW2_9CAUL Length = 247 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%) Query: 11 LFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P DR + I + G + + L A+ + GIT Sbjct: 5 IVLDTETTGFDPRTGDRLIEVGCIEI-LDLLPTGRTFHRFV--NPERLIPADAIRVHGIT 61 Query: 70 PQEARA 75 + + Sbjct: 62 DDKVKD 67 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 4/82 (4%) Query: 9 TFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 ++ D ET G +PA D Q A+R + + GE P P ++ G Sbjct: 515 SYTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDP--GREIPPESIPYHG 572 Query: 68 ITPQEARAKGENEAAFAARIHS 89 I P+ + + A H+ Sbjct: 573 IHPEMVQGQPR-IAEVLPAFHA 593 >UniRef50_Q87E07 Oligoribonuclease n=123 Tax=Bacteria RepID=ORN_XYLFT Length = 193 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 20/56 (35%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 ++ D E G D + A + TD++ NV+ E F + L Sbjct: 10 SDRRLIWIDLEMTGLDTHRDSIIEIATVVTDAQLNVLAEGPEFAISHPLNVLEAMD 65 >UniRef50_UPI0001C41BCD exonuclease n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41BCD Length = 261 Score = 55.3 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 4/76 (5%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 +F D ET G +P + + + + +I E + ITGIT Sbjct: 46 IIFFDTETSGLNPNYCKIIELGMLVI-EDGKIIEEYDKLI---NIGERIDSTITRITGIT 101 Query: 70 PQEARAKGENEAAFAA 85 +G +E A Sbjct: 102 NDMLIDEGVSEGDVAQ 117 >UniRef50_UPI0001792A17 PREDICTED: similar to small fragment nuclease n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792A17 Length = 188 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 6/90 (6%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 + + ++ D E G + A I TD V+ E +D L Sbjct: 9 MNNEHNIVWFDGEMTGLDCNHHTLIEAAIIITDKNLKVLAESPNIIIHQSDKVLENMEEW 68 Query: 64 L-----ITGITPQEARAKGENEAAFAARIH 88 I+G+T + R + ++ Sbjct: 69 SKKHHGISGLT-ENVRKSNISIEQADQMLY 97 >UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micrococcaceae RepID=A0JYL8_ARTS2 Length = 254 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D ET G + R + D++ +VI E E A + G+T + Sbjct: 30 FDLETTGRNSRAARIVTASVTVVDADGSVITEHEWLA---DPGIEIPAEASEVHGVTTER 86 Query: 73 ARAKGENEAAFAARI 87 AR +G A + Sbjct: 87 ARLEGRPAAEVTREL 101 >UniRef50_A5EY86 DNA polymerase III, epsilon subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EY86_DICNV Length = 233 Score = 55.3 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 14/85 (16%) Query: 11 LFHDYETFGTHPALD------RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + D ET G + D R + + + + F+C + P A Sbjct: 6 VIFDTETTGMNFESDNKAEGHRIIEIGCVEL---IDRVPTEHYFHCYLNPEQPVDPQAFK 62 Query: 65 ITGITPQEARAKG-----ENEAAFA 84 + GI+ + K E Sbjct: 63 VHGISDEFLADKPFFKDVLPEFEAY 87 >UniRef50_Q0BM06 DNA-directed DNA polymerase n=20 Tax=Francisella RepID=Q0BM06_FRATO Length = 238 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 11 LFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 +F D ET G + +R +F A+ + + G FYC P Y + GA+ I G+T Sbjct: 13 VFIDTETTGFDYKIGNRIIEFGAVEV-IDRRITGNNLHFYCNPN--YKVEAGALAIHGLT 69 Query: 70 PQEARAKGENE 80 + K E Sbjct: 70 NEFLADKPLFE 80 >UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHX7_9BACT Length = 256 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 4/75 (5%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MT + +F D E G A DR + + I+ + + F + Sbjct: 1 MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVFPDGREESKTLRF----NPEMHISA 56 Query: 61 GAVLITGITPQEARA 75 A + GI ++ Sbjct: 57 EATAVNGIKDEDVAD 71 >UniRef50_A1VGE3 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Desulfovibrio vulgaris RepID=A1VGE3_DESVV Length = 251 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 TF+ D E G P D A + E + G F K P+ A+ + G+ Sbjct: 47 TFVVLDLEMTGLVPRRDAIIAVAGVTMRGERILAGR--CFEAKMRPHLPPEEDAIAVHGL 104 Query: 69 TPQEARAKGENEAAFAA 85 P E + + AA Sbjct: 105 LPDETATHDDPAESLAA 121 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 T ++ +FL D ET G +P + AA+R E ++ + KP+ ++P Sbjct: 5 TIEEASFLIVDLETTGLNPVNSEIIEIAALRV--EGGIVVDKFHTLVKPSIGFIPT-YIT 61 Query: 64 LITGITPQEARAKGENEAAFAA 85 +TGIT K E F Sbjct: 62 KLTGITNALVVDKPTIEEVFPQ 83 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + T++ D ET G + + AA++ + +I F + + + Sbjct: 425 SEETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSFA---NPGHPLSVTTMEL 480 Query: 66 TGITPQEARAKGENEAAFAA 85 TGIT + + + + A Sbjct: 481 TGITDEMVKDAPKPDEVLAR 500 >UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGM6_ACHLI Length = 227 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 6/84 (7%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAI---RTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 L D+ET G P D+ + A+ + + ++ E + + Sbjct: 5 YKKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTP---ITDFIS 61 Query: 64 LITGITPQEARAKGENEAAFAARI 87 +TGIT + G E ++ Sbjct: 62 NLTGITNEMLARDGVEEEYAFRQL 85 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + D ET G P + Q AA+R + + E Y P +TGI Sbjct: 2 NLVIFDLETTGFSPRWNDIIQIAAVRL-VDGRISDETFSTYVSPRRPVPDH--ITELTGI 58 Query: 69 TPQEARA 75 T + Sbjct: 59 TDADVAD 65 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 ++ D ET G D + +A++ + + E F GA + GI Sbjct: 57 NYVVFDLETTGISAVKDDIIEISALKVKNH----EQVETFSRLVNPRRPIPAGATKVNGI 112 Query: 69 TPQEARAKGENE---AAFAARI 87 T + +++ E F I Sbjct: 113 TDEMVQSEPGLEFILPEFLDFI 134 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKP-ADDYLPQPG 61 ++ +F+ D ET G DR + A R + G+ Y + + + Sbjct: 342 KNIEEESFVVFDLETTGLSRYKDRITEIGACRVEG-----GKITEIYNELVNPEMVIPEK 396 Query: 62 AVLITGITPQEARAKGENE 80 + ITGIT + + E Sbjct: 397 IIEITGITNEMVKDCPTIE 415 >UniRef50_B6ISI0 Exonuclease, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6ISI0_RHOCS Length = 699 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 3/74 (4%) Query: 9 TFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 +++ D ET G +P+ D A +R + + GE + I G Sbjct: 505 SYVVFDTETTGLNPSQGDEMVALAGVRIVNGRILTGETFQTLI--NPGRAIPAASAAIHG 562 Query: 68 ITPQEARAKGENEA 81 IT EA Sbjct: 563 ITDAMVAEAPRAEA 576 >UniRef50_C4XFQ7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFQ7_MYCFE Length = 1467 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K ++ D ET G P ++ ++ S G F+ K + P + Sbjct: 428 KGQEYVSFDIETTGLCPRFAVIIEYGSLPIHSNM-KYGRKTQFFIKCQEPIKPFTENL-- 484 Query: 66 TGITPQEARAKGENEAAFAARIHS 89 TGIT G +I++ Sbjct: 485 TGITNAMIEKSGLELKEALQKIYN 508 >UniRef50_C9YB77 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB77_9BURK Length = 307 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSE---FNVIGEPEVFYCKPADDYLPQPGAVL 64 T L D ET G A ++ + A +R D + +G +V+ P V Sbjct: 37 KTILVLDTETTGLDQAKEKIIELALLRVDIDTATGLPVGPVQVYDGLEDPGKAIPPEVVA 96 Query: 65 ITGITPQEARAKGENEAAFA 84 ITGI + + + +EA A Sbjct: 97 ITGIQDADVQGQALDEARVA 116 >UniRef50_C1XKD8 DNA polymerase III, alpha subunit (Gram-positive type) n=2 Tax=Meiothermus RepID=C1XKD8_MEIRU Length = 261 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 + D ET G P + A IR ++ G VF L P +TG Sbjct: 81 EAVVVLDIETTGLSPTDHEIIELALIRLEN-----GRRTVFERLVNPGVLIPPFISRLTG 135 Query: 68 ITPQEARA 75 I Q+ R Sbjct: 136 IRSQDVRD 143 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 4/82 (4%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + T++ D ET G P D+ + A++ +I E L Sbjct: 393 NENKSYNTYVVFDIETTGLSPIRDKITEIGAVKIVD--GIITERFSQLI--NPQMLIPEK 448 Query: 62 AVLITGITPQEARAKGENEAAF 83 +T IT + E Sbjct: 449 VQELTRITNALVENEPTIEEVA 470 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D ET G DR Q+A I +D + G A I GI+ ++ Sbjct: 42 FDLETTGLDARKDRIVQYALIGSDVD----GSHINLASLVDPRRGIPTAASRIHGISEED 97 Query: 73 ARAKGENE 80 R G E Sbjct: 98 VRGVGSFE 105 >UniRef50_Q1NJL0 DNA polymerase III, epsilon subunit n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJL0_9DELT Length = 238 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 F+ D E G D A+R ++ ++G+ KP+ LP+ + LI Sbjct: 37 DYDFVVFDTELTGLDRRRDEIVSIGAVRINNLRIMVGDTFYVQVKPS-QALPK-DSTLIH 94 Query: 67 GITPQEARA 75 +TP + Sbjct: 95 RLTPHQLSD 103 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 ++ D ET G P D+ + A++ + + G+ + C + + +TG Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKI-RDGKISGK---YNCIIHPEIEVSDFIINLTG 57 Query: 68 ITPQEARAKGENEAAFAARI 87 I+ KG Sbjct: 58 ISRDML-RKGIPLKEGVEEF 76 >UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Mollicutes bacterium D7 RepID=C3RQT5_9MOLU Length = 224 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP---QPGAVL 64 ++ D ET G + DR + AI+ V+ C P P Sbjct: 39 QEYVVFDLETTGFNKKEDRIIEIGAIKV-KNGRVVDR-FSTLCAPIKGGKPMYISAKITE 96 Query: 65 ITGITPQEARAKGENEAAFAA 85 +TGI + + E+ Sbjct: 97 VTGIKNVDLLNQ-IPESEAVK 116 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K F+ D ET G DR +FAAIR F+ I + F P + + I Sbjct: 5 KDVEFVCLDCETTGLDVKKDRVIEFAAIRF--TFDEIIDSVEFLIHP--ERAVSAESQKI 60 Query: 66 TGITPQEARAK 76 I+ R K Sbjct: 61 HKISDAMLRDK 71 >UniRef50_Q4UVB0 Oligoribonuclease n=29 Tax=Bacteria RepID=ORN_XANC8 Length = 194 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 6/82 (7%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT--- 66 ++ D E G D + A I TD++ NV+ E + + L Sbjct: 11 LIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHR 70 Query: 67 --GITPQEARAKGENEAAFAAR 86 G+ Q A A+ Sbjct: 71 RSGLW-QRVLDSQVTHAQAEAQ 91 >UniRef50_Q81AF9 DNA polymerase III alpha subunit n=76 Tax=Bacillus RepID=Q81AF9_BACCR Length = 315 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M + ++ D+ET G +P D+ Q AA++ + + F + Sbjct: 1 MGNVSLPLDYVVIDFETTGFNPYNDKIIQVAAVKYRNH----ELVDQFVSYVNPERPIPD 56 Query: 61 GAVLITGITPQEARAKGENEAA---FAARIHS 89 +TGIT E F A +H+ Sbjct: 57 RITSLTGITNYRVSDAPTIEEVLPLFLAFLHT 88 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 6 KQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + T+ D ET G +P+ D Q A+R + + E P + Sbjct: 540 TELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDPC--RPLPEESAR 597 Query: 65 ITGITPQEARAKGENEA 81 + GIT + EA Sbjct: 598 VHGITADMLAGQPVIEA 614 >UniRef50_UPI00015B53D6 PREDICTED: similar to ENSANGP00000010833 n=1 Tax=Nasonia vitripennis RepID=UPI00015B53D6 Length = 185 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 1 MTDTDKQPT--FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY 56 M + Q ++ D E G + D+ + A+I TD + N++ + ++D Sbjct: 1 MASSAVQKADRIIWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDV 58 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K+ T++ D ET G D+ + A I+ N IGE F I Sbjct: 477 KEATYVVFDLETTGLSNVRDKIIEIAGIKI-KNGNKIGE---FQKFIDPQQKLTKTITNI 532 Query: 66 TGITPQEA 73 T IT + Sbjct: 533 TNITDEML 540 >UniRef50_B2Q2X9 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q2X9_PROST Length = 234 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 3/82 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K L D ET G P DR + ++ + +Y D+ + +I Sbjct: 48 KTQQILSIDLETTGLDPEKDRILSIGMVTIADSKILLKSAQHYYV--NDNEPVKAETAVI 105 Query: 66 TGITPQEARAKGENEAAFAARI 87 ITP++ G + A Sbjct: 106 NHITPEQLSD-GVSLPHAIASF 126 >UniRef50_D1NUV9 Oligoribonuclease n=3 Tax=Bifidobacterium RepID=D1NUV9_9BIFI Length = 219 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 +T + +Q ++ D E G D + + + TD E NV+ E F KP+ D + Sbjct: 8 LTYSAQQSRLIWIDCEMTGLDIFHDELCEVSVVPTDFELNVLDEGIDFVIKPSKDAVDHM 67 >UniRef50_C5B532 DNA polymerase III epsilon subunit n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B532_METEA Length = 248 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 4/79 (5%) Query: 7 QPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + D ET GT P DR + + + F F+ + A I Sbjct: 4 SQRIVVGDTETTGTDPKGGDRIIEVGFVEIVNGFR---TGRHFHSYVNPERPVPADATAI 60 Query: 66 TGITPQEARAKGENEAAFA 84 GIT + + A A Sbjct: 61 HGITDEMLKDAPVFAAVAA 79 >UniRef50_Q6A786 Oligoribonuclease n=38 Tax=cellular organisms RepID=ORN_PROAC Length = 202 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL----- 64 ++ D E G A D + AA+ TD + NV GE KP +L + Sbjct: 2 LVWIDCEMTGLDLAHDGLIEVAALVTDGQLNVQGEGVDVIIKPEPQWLDHMNDFVRNMHT 61 Query: 65 ITGITPQEARAKGENEAAFAARI 87 +G+ + KG A ++ Sbjct: 62 TSGLLAE--LDKGLTMAQAQDQV 82 >UniRef50_Q0RPW6 Oligoribonuclease n=9 Tax=Actinomycetales RepID=Q0RPW6_FRAAA Length = 256 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 21/48 (43%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G A D + A + TDSE N++ E D+ L Sbjct: 18 LVWIDCEMTGLDAASDLLLEVACLVTDSELNILDEGIDLVISAPDEAL 65 >UniRef50_A4U4S6 DNA polymerase III epsilon chain-like protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U4S6_9PROT Length = 619 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%) Query: 2 TDTDKQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 + TF+ D ET G P DR Q A+R + GE P Sbjct: 422 NEKLSDLTFVAFDCETTGLRPDQGDRLIQVGAVRIGQGRVLSGESFERLIDP--GIPIPA 479 Query: 61 GAVLITGITPQEARAK 76 ++ GI+ + K Sbjct: 480 QSMAYHGISNDMVKGK 495 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 5/88 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 Q F D ET G P D Q A+R + + GE P Sbjct: 269 DQPLNQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDP--GRPIPEA 326 Query: 62 AVLITGITPQEARAKGENE-AAFAARIH 88 + + G++ +G + A AA H Sbjct: 327 STRVHGVSTAMV--QGAPDIAEAAAEFH 352 >UniRef50_B6JVJ0 Oligoribonuclease n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JVJ0_SCHJY Length = 187 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GAVLI 65 + ++ D E G D + AAI TD + N I E DD L Q + Sbjct: 6 RSPLVWVDCEMTGLEVGKDVLMEVAAIITDGDLNPIEEKFEETIHVDDDKLRQMNDWCID 65 Query: 66 TG 67 Sbjct: 66 HH 67 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 4/68 (5%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 ++ D ET G DR + AI F E + + A I Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAIL----FENGHTVETYSSLVNPEVKISKEATTINH 105 Query: 68 ITPQEARA 75 IT + Sbjct: 106 ITNGMVKK 113 >UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2KXB5_BORA1 Length = 193 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 F+ D ET G +FAA+R D+E + E + +P +TG Sbjct: 26 SAFVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQL-VRIN-GRVPS-FIARLTG 82 Query: 68 ITPQEARAKGENEAAFAARI 87 I+ QE G+ Sbjct: 83 ISQQEVIRDGKPIDEAFRAF 102 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 4/78 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K F+ D E G DR +FAA R + NVI E D + + I Sbjct: 5 KDTIFVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETLI---NPDRVISAESQRI 60 Query: 66 TGITPQEARAKGENEAAF 83 I+ + + F Sbjct: 61 HRISDAMLKDQPRISEVF 78 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 5/88 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 TF+ D ET G H D +F+A R + I + F+ K D Sbjct: 408 NTKLSDATFVIFDIETTGLHGRYDDVIEFSA-RKIKNNSEID-HQQFFLKI--DKPIPKT 463 Query: 62 AVLITGITPQEARAKGENEAAFAARIHS 89 IT IT + G ++ +I + Sbjct: 464 ITEITKITDEMLE-GGIDQQQGLEKIRN 490 >UniRef50_C1C170 Oligoribonuclease, mitochondrial n=2 Tax=Caligus clemensi RepID=C1C170_9MAXI Length = 230 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 5/72 (6%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP---- 58 + ++ D E G D + A I TDS + D L Sbjct: 47 PSTNLRRLVWIDCEMTGLDIEKDVLMEVAVIVTDSSLREVTPGINLIIHQPDSILNAMTE 106 Query: 59 -QPGAVLITGIT 69 + +TG+T Sbjct: 107 FPEESHALTGLT 118 >UniRef50_Q1QW65 DNA polymerase III, epsilon subunit n=13 Tax=Gammaproteobacteria RepID=Q1QW65_CHRSD Length = 253 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 11 LFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P R + A+ + G Y P D P AV + GIT Sbjct: 4 IVLDTETTGIDPKDGHRLIEIGAVEV-VNRRLTGNNYHQYINPERD--IDPEAVEVHGIT 60 Query: 70 PQEARAKGE 78 + + Sbjct: 61 NERVADEPV 69 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 6 KQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + ++ D ET G +P+ D Q A R + + E F + P + Sbjct: 575 SELSYTVFDTETTGLNPSQGDEIIQVGATRILN--GKLLRAESFEQLVDPERPLAPESAK 632 Query: 65 ITGITPQEA 73 I GIT + Sbjct: 633 IHGITSEML 641 >UniRef50_D0JBJ5 DNA polymerase III subunit epsilon n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JBJ5_BLASB Length = 256 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 4/72 (5%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 F D E G + DR + + ++ N + C P + Sbjct: 4 KLHRPICFFDIEATGINIGKDRIIEISILKIFPNGNQ-EDKTWLVC---PGIPIPPQSTA 59 Query: 65 ITGITPQEARAK 76 I GI ++ K Sbjct: 60 IHGIKNEDVEGK 71 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 TF+ D ET G +DR + A+R + V F V +T Sbjct: 25 PRTFVGLDLETTGVDSRVDRIIEVGAVRV-VDGRVADT---FESFVNPGCPIPSDIVHLT 80 Query: 67 GITPQEAR 74 GI+ + Sbjct: 81 GISDADVA 88 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 6 KQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 T+ D ET G PA D Q A+R + + E F + +P + Sbjct: 541 SDLTYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNE--NFDQLVDPERFIRPEGIR 598 Query: 65 ITGITPQEARAKGENE 80 I GI+ R + E Sbjct: 599 IHGISDDMVRGQPNIE 614 >UniRef50_C4R594 RNA exonuclease, required for U4 snRNA maturation n=5 Tax=Saccharomycetaceae RepID=C4R594_PICPG Length = 213 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 1/74 (1%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-G 61 + Q ++ D E G D + I TD V+ E +D + + Sbjct: 31 SSPLQQPIVWIDCEMTGLDIYNDHIVEICCIITDQNLEVVDEGYESVIHYDNDVMSKMNE 90 Query: 62 AVLITGITPQEARA 75 + T + Sbjct: 91 WCIEHHGTSGLTKK 104 >UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putative n=3 Tax=Leishmania RepID=A4HVE4_LEIIN Length = 1430 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 7/74 (9%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + K +F D ET G +P+ D + A F+ I F+ P Sbjct: 757 SQKLKTYRIVFFDIETTGLNPSTDAIVEVAM------FDPIENST-FHTLVNPQRSITPR 809 Query: 62 AVLITGITPQEARA 75 V I IT R Sbjct: 810 TVGIHHITNAMVRD 823 >UniRef50_C5V7D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7D5_9PROT Length = 303 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 11 LFHDYETFGTHPALDRPAQFAAI--RTDSEFNVIGEPEVFYCKPA-DDYLPQPGAVLITG 67 + D ET G + A D + + D + G + + P + + G Sbjct: 43 VVVDTETTGINSAQDAIIELGMVLFEYDPDTGEAGRVLGSFDQLEDPGMAIPPESTEVHG 102 Query: 68 ITPQEARAKGENEAAFAA 85 IT + + K ++AA AA Sbjct: 103 ITDEMVQGKRIDDAAVAA 120 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 +F+ D ET G PA R + A+R + V E F V + Sbjct: 82 WPRSFVALDVETTGLRPARHRIIEIGAVRYEDGCCV----ERFSVLVNPHRRLPVYIVRL 137 Query: 66 TGITPQEAR 74 TGI ++ Sbjct: 138 TGIRDEDLL 146 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 4/74 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + ++ D ET G P D+ + A++ VIGE F + Sbjct: 417 DKMIEDEIYVVFDIETTGFDPFNDKIIEIGAVKM-RGREVIGEFSEF---VNPEIPIPQK 472 Query: 62 AVLITGITPQEARA 75 +T IT + Sbjct: 473 ITELTTITDEMVAN 486 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 7/82 (8%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 ++ D ET G P DR + AI+ E D I Sbjct: 125 HTKAYIIIDLETTGLDPINDRIIEIGAIKIGKENKEYSSIIW------QDIKLSEKISNI 178 Query: 66 TGITPQEARAKGENEAAFAARI 87 TGI+ ++ KG++E Sbjct: 179 TGISDEDI-KKGKDEKNAINEF 199 >UniRef50_Q5KPH7 Oligoribonuclease, putative n=3 Tax=Agaricomycotina RepID=Q5KPH7_CRYNE Length = 184 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G DR + A I TD N + + K + L Sbjct: 13 LVWVDCEMTGLDFLNDRIIEIAVIITDGRLNPVDGGISYIIKTPKEVL 60 >UniRef50_D2RB05 CRISPR-associated endoribonuclease Cas2 n=2 Tax=Gardnerella vaginalis RepID=D2RB05_GARVA Length = 359 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFYC----KPADDYLPQPG 61 F+ D ET G + +D+ + A++ D + + C + Sbjct: 175 DKNFVVIDCETTGLNSKVDKIIEIGAVKFIDGKIEEFQKLININCDSVSNFNKNNFIPNE 234 Query: 62 AVLITGITPQEARAKGE 78 + +TGIT + G Sbjct: 235 IIELTGITSNMLESYGV 251 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 4/85 (4%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 +T + D E+ G + D Q A I+ +++ VI F Sbjct: 486 LTRGLDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIES---FQRFLTPKKFVG- 541 Query: 61 GAVLITGITPQEARAKGENEAAFAA 85 + L+ G + Q + GEN+ Sbjct: 542 DSYLVHGFSDQFLKENGENKKVVLK 566 >UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Proteobacteria RepID=A1VJH5_POLNA Length = 220 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G + D A+R + E +P L +V + + Sbjct: 43 VALDCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRL-SAESVRVHRLRE 101 Query: 71 QEARAKGENEAAFAARI 87 Q+ A+G + ++ Sbjct: 102 QDV-AQGISADEAMMKL 117 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 ++ D ET G D + +A++ ++ V GE F P A + GIT Sbjct: 25 YVVFDLETTGISSKYDEVIEISAVKVEAG-QVTGE---FSTLVNPGRKIPPAASRVNGIT 80 Query: 70 PQEAR 74 + Sbjct: 81 DKMVA 85 >UniRef50_Q0AE35 DNA polymerase III, epsilon subunit n=5 Tax=Betaproteobacteria RepID=Q0AE35_NITEC Length = 234 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 10 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 ++F D ET G PAL R + AA+ N F+ GA+ + G+ Sbjct: 3 YVFLDTETTGLDPALGHRIVEIAAVEV---CNRRSTGRHFHRYLNPGRESDEGALRVHGL 59 Query: 69 TPQEARAK 76 + + + K Sbjct: 60 SREFLQDK 67 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 5/85 (5%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 D F D ET G P ++ + A+ V+ E + F P Sbjct: 390 DQPLDGEFCVFDTETTGLDPGVEYLTEIGAVIV-RNGEVVEEFDTF---VKPGKPITPKI 445 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 +TGIT + E Sbjct: 446 TELTGITNEMVADAP-GEKEALEAF 469 >UniRef50_A4ASW0 DNA polymerase III, epsilon subunit n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4ASW0_9FLAO Length = 222 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 4/84 (4%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 ++ + F+ D ET G DR AI S IG+ Y K + + Sbjct: 25 LSQNLDEVRFIVFDTETTGLDIVNDRILSIGAISVFSGKLDIGDSLEIYLKQ---KIFKA 81 Query: 61 GAVLITGITPQEARAKGENEAAFA 84 +V I GI + + K E Sbjct: 82 ESVEIHGILKEGSIEK-HTEEEAI 104 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + FL D ET G +P D + AI+ + + + + KP + Sbjct: 410 DSSLDDALFLVFDLETTGLNPKEDEIIEIGAIK--MKGSEVLGTYSTFVKPEKEL--SAM 465 Query: 62 AVLITGITPQEARA 75 +TGIT Sbjct: 466 ITSLTGITEDMLSE 479 >UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7J4_NATTJ Length = 864 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 5/79 (6%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 + + +Q + D ET G D + AA++ + V E Sbjct: 491 LVNKFEQNKLVVFDVETTGLDTTKDEIIELAALKAGKDGVVDEFHEYLRNSKPVG----- 545 Query: 61 GAVLITGITPQEARAKGEN 79 + + GI+ Q +G+ Sbjct: 546 ESFQVHGISDQVLLEQGKP 564 >UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0V1_9ACTO Length = 232 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 L D ET G A DR A+ V+ + + + A+ + GI Sbjct: 7 NLLGFDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLF---NPGVEIPQSAIDVHGI 62 Query: 69 TPQEARAKGE 78 T + A+A+G Sbjct: 63 TNERAQAEGL 72 >UniRef50_UPI0000DB7BA5 PREDICTED: similar to Probable oligoribonuclease n=1 Tax=Apis mellifera RepID=UPI0000DB7BA5 Length = 212 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 1/67 (1%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP- 60 T+ K ++ D E G + + A + TD + + +D+ L Sbjct: 23 TNVQKNDYIVWLDMEMSGLDINTSQILEIACVITDKNLKTVSKDLNIVIHQSDEILNNMN 82 Query: 61 GAVLITG 67 L T Sbjct: 83 DWCLATH 89 >UniRef50_Q89A34 Oligoribonuclease n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=ORN_BUCBP Length = 160 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 57 ++ D E G +P + + + A + TD ++ V + L Sbjct: 6 KNLIWIDLEMTGLNPNIHKIIEIATLITDKNLKILSYGPVIAIYQNNHQL 55 >UniRef50_B7GR95 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Bifidobacterium longum subsp. infantis ATCC 15697 RepID=B7GR95_BIFLI Length = 185 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCK 51 + DK L+ D ET G P D + I T + + + Sbjct: 5 DNDDKPVRLLWVDTETTGLDPRKDPILEIGMIATGPDLKPVDDGFHTTVH 54 >UniRef50_B3P8E1 GG12405 n=2 Tax=Endopterygota RepID=B3P8E1_DROER Length = 184 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 18/47 (38%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY 56 ++ D E G D+ + + I TD + NV E F + Sbjct: 11 IVWMDLEMTGLDIEKDKILEVSCIITDKDLNVKSEATCFAINHPQEV 57 >UniRef50_C6CYA2 DNA polymerase III, epsilon subunit n=2 Tax=Bacillales RepID=C6CYA2_PAESJ Length = 244 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 8/90 (8%) Query: 1 MTDTD-KQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 58 M DT K+ + D ET G +P+ D F A+ + + E FY Sbjct: 50 MLDTPLKELDIVVFDLETTGFYPSNGDEIISFGAV--HMKGLELDESRQFYSLVNPKRRI 107 Query: 59 QPGAVLITGITPQEARAKGENEAAFAARIH 88 + +TGIT + + +H Sbjct: 108 PRQIIELTGITNEMVQD----APDLMQVLH 133 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 8/75 (10%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P +F+D ET GT DR + AA E F + A I G Sbjct: 2 PALIFYDTETTGTQIDKDRIVELAAYN-------GTTSESFQTLVNPEIPIPAEATKIHG 54 Query: 68 ITP-QEARAKGENEA 81 IT + A A EA Sbjct: 55 ITTAEVADAPRFPEA 69 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 63 ++ L+ D ET GT+PA Q AI + + V+ E C P + P A+ Sbjct: 1 MNQHKKVLYCDVETTGTNPAKHGIIQIGAI-IEVDGVVVEE-CNLKCAPHEGAEISPDAL 58 Query: 64 LITGITPQEARAKGENEAAFAARIH 88 I+G E ++ + A+ H Sbjct: 59 AISGTERSELESRMTSHEAYTQFRH 83 >UniRef50_Q8B5Y0 Putative oligoribonuclease n=1 Tax=Diachasmimorpha longicaudata entomopoxvirus RepID=Q8B5Y0_9POXV Length = 206 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 14/58 (24%) Query: 4 TDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + D E G P D + T+ + +DD L Sbjct: 25 KTMANNIAWLDLEMTGLDPETDNILEIGCFITNDALEITSPIFHMIIHNSDDILKSMD 82 >UniRef50_Q1GL30 DNA polymerase III epsilon subunit n=2 Tax=Ruegeria RepID=Q1GL30_SILST Length = 479 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 2/76 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + F+ D ET G D + AA R + + GE Y P + I Sbjct: 269 SELNFVVFDTETTGLSVTKDAIVELAAARVLNGRILDGEVFETYVDP--GRPIPAASTKI 326 Query: 66 TGITPQEARAKGENEA 81 G+ + EA Sbjct: 327 HGVRDADVAQSPRIEA 342 >UniRef50_A4QGM5 Oligoribonuclease n=16 Tax=Corynebacterium RepID=ORN_CORGB Length = 219 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 ++ D E G + AA+ TD+ NV+GE ++ L Q + Sbjct: 19 LVWVDLEMTGLDLKRHVIVEVAALVTDANLNVLGEGVDLVVHATEEELAQMDDFVTN--- 75 Query: 70 PQEARAKGENE 80 + G E Sbjct: 76 --MHESSGLTE 84 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 ++ D ET G P+ D + A++ VIGE F + I Sbjct: 415 MNSIYVVFDLETTGLDPSADEIIEIGAVKL-KGTEVIGE---FSSFVKPERNLSEKVTRI 470 Query: 66 TGITPQEARA 75 TGI+ +E Sbjct: 471 TGISDRELED 480 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 ++ D ET G +P D + AAIR E + F C +T Sbjct: 125 PSEYVVVDIETTGLNPNKDEIIELAAIRVRGGR----ETDAFQCLVRCGGELSDAIAKLT 180 Query: 67 GITPQEARAKGE 78 G++ A+G Sbjct: 181 GLSHSRLMAEGL 192 >UniRef50_C1YH96 DNA polymerase III epsilon subunit-like 3'-5' exonuclease n=2 Tax=Actinomycetales RepID=C1YH96_NOCDA Length = 233 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 20/75 (26%), Gaps = 3/75 (4%) Query: 13 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 72 D E+ G A DR A R D A I IT + Sbjct: 11 FDTESTGLDLANDRIVTAALWRIDPAARTKEVTTWLI---DPGIDIPQEATDIHHITTEH 67 Query: 73 ARAKGENEAAFAARI 87 AR G A I Sbjct: 68 AREHGRPAAEAVPEI 82 >UniRef50_C0GM30 DNA polymerase III, epsilon subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM30_9DELT Length = 249 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + F+ D E G + D A+R + + F P D +++I Sbjct: 48 NEYDFVVLDTELTGLNVKKDEIVTIGALRISEMRIDMEQSFYFCACPTRDVPK--QSIVI 105 Query: 66 TGITPQEA-RAKGENEA 81 GITP EA +A EA Sbjct: 106 HGITPSEAQKAPPLKEA 122 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 +++ D ET G P + + A++ + E + + KP + L P +TG Sbjct: 37 KSYIAFDLETTGLDPMNNEIIEIGALKVRD--GKVSERFMEFIKPQE--LISPAITGLTG 92 Query: 68 ITPQEARA 75 I+ + Sbjct: 93 ISNDMVAS 100 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFYCKPADDYLPQ 59 + ++ TF+ D ET G A+R + FN + E + KP + Sbjct: 31 LKQKVEETTFVVFDTETTGLDLRRAELVSIGALRVVNYSFN-LSESFHRFVKPKELTRVS 89 Query: 60 PGAVLITGITPQEARAKGENE 80 V I GITP E K E+ Sbjct: 90 ---VEIHGITPHELEKKAESH 107 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 7/65 (10%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 L++D ET G D + A + +G F P A I IT Sbjct: 4 LYYDTETTGIKADRDYVIELAVY------DPVGNRT-FERLINPGVPIPPEATAIHHITD 56 Query: 71 QEARA 75 + Sbjct: 57 EMVAN 61 >UniRef50_A3UR50 DNA polymerase III, epsilon chain n=6 Tax=Vibrionales RepID=A3UR50_VIBSP Length = 238 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 3/84 (3%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 MTD K ++ D ET G D + + + Y +D Sbjct: 42 MTDLAKDSDYIVLDLETTGLDSEQDLILSMGWVDVVKGRIDLASAKHIY--LDNDSQINA 99 Query: 61 GAVLITGITPQEARAKGENEAAFA 84 +I ITPQ +G + Sbjct: 100 ETAVINHITPQMLE-EGASIHDAM 122 >UniRef50_UPI00005A0A92 PREDICTED: similar to small fragment nuclease (predicted) n=1 Tax=Canis lupus familiaris RepID=UPI00005A0A92 Length = 161 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 15 YETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GAVLITG 67 + G D+ + A + TDS+ N++ E K D+ L Sbjct: 71 LQMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHH 124 >UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive type n=4 Tax=Mollicutes RepID=Q2SSE0_MYCCT Length = 1479 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 3/82 (3%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 K +F D ET G P LD +F AI + GE + + Sbjct: 424 NQNLKDAKMVFFDLETTGLSPELDEIIEFGAIEYNF---KTGERKKIDILIKPKSKLKDF 480 Query: 62 AVLITGITPQEARAKGENEAAF 83 +T I + K E AF Sbjct: 481 TKKLTNINEEMLENKPGIEVAF 502 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 T+ D ET G D +F + + KP V +TGI Sbjct: 398 TYCVFDLETTGLSSRFDHIIEFGGQIVKD--RTCIKSLQLFIKPP--VPIPAHIVELTGI 453 Query: 69 TPQEARA 75 + + R Sbjct: 454 SEEHVRN 460 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 4/70 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 T++ D+ET G D+ + AAI+ + +I E F P +T I Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNN-QIIDE---FQTLINPQQELTPFIENLTNI 463 Query: 69 TPQEARAKGE 78 + Q+ + + Sbjct: 464 SNQDLKNQPL 473 >UniRef50_Q6MGT7 DNA polymerase III alpha subunit n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGT7_BDEBA Length = 217 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP-QPGAVLITGI 68 F+ D ET GT P +D+ + A+R G+PE + D P PGA + GI Sbjct: 15 FIAFDLETTGTVPGVDQIVEIGAVRFID-----GQPEAIFATLIDPLRPIPPGASAVNGI 69 Query: 69 TPQEARAKGE 78 + + K Sbjct: 70 SDDMVKGKPL 79 >UniRef50_Q11G58 DNA polymerase III, epsilon subunit n=1 Tax=Chelativorans sp. BNC1 RepID=Q11G58_MESSB Length = 498 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 2/65 (3%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G R Q A + E F P ++ I GIT Sbjct: 16 VAFDTETTGLDTRTARVVQVAGVAISRGAVRQDES--FESLVHPGMSIPPDSIRIHGITD 73 Query: 71 QEARA 75 R Sbjct: 74 GMLRE 78 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 4/80 (5%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 ++ D ET G D+ + A++ + + P +TG Sbjct: 3 KDYVCVDIETSGIRVKWDKIIEIGAVKV-RDGKAVDTFSELI---NPGLKLSPYITELTG 58 Query: 68 ITPQEARAKGENEAAFAARI 87 IT + + K E I Sbjct: 59 ITDEMLKDKPFIEEVLPRFI 78 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 25/79 (31%), Gaps = 7/79 (8%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F+ D ET G P D + A+R ++ F P +T IT Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRC-RGGEIVDS---FQSFVRPTKPVPPEVQKLTNIT 509 Query: 70 PQEARAKGENE-AAFAARI 87 P +G E A Sbjct: 510 PDML--EGAPEAAEALRAF 526 >UniRef50_C6XW17 Exonuclease RNase T and DNA polymerase III n=74 Tax=cellular organisms RepID=C6XW17_PEDHD Length = 328 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + + F D ET G + DR + A ++ + + + + + + A L Sbjct: 4 NLKRPLAFFDLETTGVNVGADRIVEIAILKAMPDGSELIKT----MRINPEMPIPLYASL 59 Query: 65 ITGITPQEARAKGE 78 I GI + + Sbjct: 60 IHGIYDEHIANEPI 73 >UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ6_9ACTO Length = 206 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P DR + + D GE + L GAV + G+T Sbjct: 3 YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSL---VNP--LRGMGAVFVHGLT 57 Query: 70 PQEARA 75 + Sbjct: 58 DADVAD 63 >UniRef50_Q0FXM2 Exonuclease, DNA polymerase III, epsilon subunit family protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXM2_9RHIZ Length = 466 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 3/78 (3%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P D Q AIR + E E F + I GIT Sbjct: 274 YCVFDTETTGLIPHRDEIVQIGAIRIVD--GKLVEGETFDTLVDPGGPIPRASSKIHGIT 331 Query: 70 PQEARAKGENEAAFAARI 87 + + A R Sbjct: 332 DKMVMGQPR-IAEAGRRF 348 >UniRef50_B4S8Q4 DNA-directed DNA polymerase n=2 Tax=Chlorobiaceae RepID=B4S8Q4_PROA2 Length = 180 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%) Query: 10 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + D ET G P DR + AA+ + VI E F C + I GI Sbjct: 13 VIAVDVETTGLSPRRGDRVIEVAAVAIVN--GVIEE--HFCCLINVNAPIPTVVQKIHGI 68 Query: 69 TPQEARAKGENEA---AFAARI 87 TP+ + EA F I Sbjct: 69 TPELLAGEKPPEAVWPEFLKFI 90 >UniRef50_C4Y8A3 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y8A3_CLAL4 Length = 283 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 16/43 (37%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEP 45 T ++ D E G A D + I TD N+I E Sbjct: 28 STALYKPLVWIDCEMTGLDIAKDHIIEICCIITDGNLNIIDEK 70 >UniRef50_C1CX37 Putative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit) n=1 Tax=Deinococcus deserti VCD115 RepID=C1CX37_DEIDV Length = 202 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 4/76 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY----LPQPGAVL 64 + D ET G P D + A+R + +P + + A Sbjct: 2 NVVVFDLETTGLSPERDGIVEIGALRVVNGQVHEHLRYETLVRPTNAAGERLMIPWHAQR 61 Query: 65 ITGITPQEARAKGENE 80 + GI+ + R+ E Sbjct: 62 VHGISNEMVRSAPTIE 77 >UniRef50_C2BJB2 DNA polymerase III subunit epsilon n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BJB2_9CORY Length = 232 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 7/84 (8%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 +P F D ET G + DR + A R D F ++ + P + I Sbjct: 31 RPVFAVIDTETTGFNKRYDRIIELAVARFDESFRLVDQ-WHTLINPDGKQIKNSH---IH 86 Query: 67 GITPQEAR-AKGENE--AAFAARI 87 GIT + A E FAAR+ Sbjct: 87 GITNADVAHAPTFPEVYTEFAARV 110 >UniRef50_A8ES54 DNA polymerase III, epsilon subunit n=4 Tax=Epsilonproteobacteria RepID=A8ES54_ARCB4 Length = 203 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 2/78 (2%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 +T Q ++ D ET G +P D A+ ++ + + KP+ D + Sbjct: 24 ETPPQNEYVSLDCETTGLNPKKDEILSIGAVLIKDNKILMRKTFNIFLKPSKDINI--ES 81 Query: 63 VLITGITPQEARAKGENE 80 + + + + E E Sbjct: 82 IKVHHLRQIDLNDALEPE 99 >UniRef50_B8GE83 Exonuclease RNase T and DNA polymerase III n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GE83_METPE Length = 193 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 12/88 (13%) Query: 10 FLFHDYETFGTHPALD----------RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 59 +LF D ET G R + + TD++ VI E + D + Sbjct: 2 YLFFDTETTGLPKKKHASMHRVANWPRIVELGWVLTDTKGTVIEEAGLLVR--PDGFSVP 59 Query: 60 PGAVLITGITPQEARAKGENEAAFAARI 87 + I GIT ++A +G + AR Sbjct: 60 AESTAIHGITTEQATEQGSAISEVLARF 87 >UniRef50_A0PU74 Oligoribonuclease n=72 Tax=Bacteria RepID=ORN_MYCUA Length = 215 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + ++ D E G D+ + AA+ TD++ N++G+ D L V+ Sbjct: 1 MREELVWIDCEMTGLDLGPDKLIEIAALVTDADLNILGDGVDVVIHADDAALSSMVDVVA 60 Query: 66 TGITPQEARAKGENE 80 G E Sbjct: 61 -----DMHSRSGLTE 70 >UniRef50_A5F9M6 DNA polymerase III, epsilon subunit related exonuclease n=2 Tax=Clostridium kluyveri RepID=A5F9M6_CLOK5 Length = 441 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 F+ D ET G P D + AA + ++ +I + P I I Sbjct: 130 NFVVVDLETTGLEPTRDYIIEIAAAKYENN-EIIDTYTTL---VNPEVFIPPNITNINHI 185 Query: 69 TPQEARA 75 + Sbjct: 186 DNDMVKD 192 >UniRef50_A3V111 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V111_9RHOB Length = 469 Score = 51.4 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 2/69 (2%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 66 T++ D ET G P D Q A+R + GE + + Sbjct: 273 DLTYVVFDTETTGFLPNKDEVVQIGALRVVNGQQAPGEVLDLLV--NPGRAIPASSTAVH 330 Query: 67 GITPQEARA 75 IT + Sbjct: 331 RITDAMVKD 339 >UniRef50_C6V4W1 DNA polymerase III, epsilon subunit n=2 Tax=Neorickettsia RepID=C6V4W1_NEORI Length = 228 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 4/66 (6%) Query: 11 LFHDYETFGTH-PALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G DR + + +F + GE Y + A + GIT Sbjct: 7 VILDTETTGLDMKNGDRVIEIGCVEM-VDFRITGEIFHIY--LNPEREISKEATRVHGIT 63 Query: 70 PQEARA 75 ++ Sbjct: 64 FEQLAD 69 >UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SAW0_PELPB Length = 190 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 12/89 (13%) Query: 10 FLFHDYETFGT-----HPALD-----RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 59 +LF D ET G P D R Q A + D+E N + + + ++ Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAII--KPEGFVIP 59 Query: 60 PGAVLITGITPQEARAKGENEAAFAARIH 88 AV I GI+ Q A +G+ + Sbjct: 60 SSAVQIHGISTQRALLEGKPLGQVLQSFY 88 >UniRef50_C0DA77 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=C0DA77_9CLOT Length = 255 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 +++ D ET G P LD+ + AA+R + V G F V +TGI Sbjct: 15 SYVAIDIETTGLEPRLDKITEIAALRV-VDGAVEGR---FVTLVNPGRPLGERIVELTGI 70 Query: 69 TPQEAR 74 T Sbjct: 71 TDGMLA 76 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 ++ D ET G + D + AA++ ++ + P V +TGIT Sbjct: 427 YVVFDTETTGLNAREDTLIEIAAVKV-KAGQIVDTYATLI---DPERSLDPKIVELTGIT 482 Query: 70 PQEAR 74 + Sbjct: 483 NEMVA 487 >UniRef50_Q1QDN3 Exonuclease n=3 Tax=Psychrobacter RepID=Q1QDN3_PSYCK Length = 203 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%) Query: 1 MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 60 M ++ D E G +P AAI + + G C+P +P+ Sbjct: 26 MFTAPVDEQWVAIDCEMTGLNPKKHHLLSVAAIHINGDKIDTGNGLHLLCRPP--VMPEG 83 Query: 61 GAVLITGITPQEAR 74 ++I G+ + Sbjct: 84 DTIVIHGLRTADVE 97 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 4/74 (5%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + + TF+ D ET G + + + A++ VI E F Sbjct: 377 DVSLESATFVVFDLETTGLNKFKNEIIEIGAVKV-KSGKVIDE---FSSFVKPGESIPNK 432 Query: 62 AVLITGITPQEARA 75 +TGIT + Sbjct: 433 ITELTGITNEMVSR 446 >UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms RepID=Q68BL2_NANBA Length = 1341 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G D P + AA E + G + AD A +TGIT Sbjct: 137 IVFDLETTGLSKEKDHPVEIAA-----EAPLSGRTFSTLIRLADGMSISTKAEEVTGITT 191 Query: 71 QEARAKGEN 79 + + Sbjct: 192 AQCKDPSLP 200 >UniRef50_C6W9X5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6W9X5_ACTMD Length = 262 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 1/81 (1%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPA-DDYLPQPGAVLITGI 68 L D ET P DR + + A A I GI Sbjct: 15 LLALDLETTDVEPRRDRIVTASVVVITPGAEGAKPDVRVRTWLADPGVPIPASATAIHGI 74 Query: 69 TPQEARAKGENEAAFAARIHS 89 + ++ARA+G A + + Sbjct: 75 STEQARAEGRPVGEVVAEVEA 95 >UniRef50_B5JFP7 Exonuclease superfamily n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFP7_9BACT Length = 193 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 2/79 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + + + D E G PA DR + A I T+ + + E E +P + Sbjct: 2 SKRRYCWIDLEMTGLDPATDRIVEAAVIITNKQLEPVFEWESAVRQPQEVLEGMNDWCKH 61 Query: 66 TGITPQEARA--KGENEAA 82 G E Sbjct: 62 HHAESGLLDRIQDGITEEE 80 >UniRef50_B4AHF2 DNA polymerase III PolC-type (PolIII) n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHF2_BACPU Length = 240 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 5/87 (5%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIG----EPEVFYCKPADDYLPQPGA 62 T++ D ET G D+ + AI+ V + Sbjct: 3 PQTYVVLDLETTGLDHKKDQIIEIGAIKIRLGGRVREFEEVSRFHTMVALEEGRDLPEFI 62 Query: 63 VLITGITPQEARAKGENEAAFAARIHS 89 +TGIT ++ E E + + Sbjct: 63 TNLTGITEEDLEDAPE-EWDALDELQN 88 >UniRef50_Q6VY79 Putative uncharacterized protein n=1 Tax=Streptomyces phage VWB RepID=Q6VY79_9CAUD Length = 263 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G DR AAI + +P GA + GIT Sbjct: 8 VAFDLETTGVDVEQDRIVTAAAIDLGA-----EKPLTLEWLADPGIEIPEGATAVHGITT 62 Query: 71 QEARAKGENEAAFAARI 87 + AR GE ++ Sbjct: 63 EHAREHGERAHDVVDQV 79 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 2/71 (2%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET G P D A+ + + EV+ + + G+T Sbjct: 443 YTAFDLETTGLDPREDAIIALGAV--HLLGSRVLRHEVYEALVDPGRPIPKASTEVHGLT 500 Query: 70 PQEARAKGENE 80 + + K + E Sbjct: 501 WEMLKDKPKLE 511 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F D ET G DR + A+ D + + + + D P I IT Sbjct: 15 FTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFSTLIF----PDRAIPPDVSKINHIT 70 Query: 70 PQEARAK 76 K Sbjct: 71 DDMLVNK 77 >UniRef50_Q31GK8 Exonuclease n=8 Tax=Bacteria RepID=Q31GK8_THICR Length = 207 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 3/85 (3%) Query: 3 DTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 62 +T + D ET G +P DR +AI+ + E + + Sbjct: 24 NTPSDDEVVCFDCETTGLNPRKDRIVSLSAIKIRGNEVLTSEALNLTFVQ--EAAISEES 81 Query: 63 VLITGITPQEARAKGENEAAFAARI 87 + I I ++ +A G +E Sbjct: 82 IKIHWIRNEDTKA-GLSEQEGIEAF 105 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 6/73 (8%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKP-ADDYLPQPGAVLITGI 68 ++ D ET G PA DR + A+R + G Y K +TGI Sbjct: 19 YVVVDLETTGISPARDRIIEIGAVRVEH-----GTVTAEYSKLVNPGRPVGGFITGLTGI 73 Query: 69 TPQEARAKGENEA 81 + + EA Sbjct: 74 SDEMVGNASPIEA 86 >UniRef50_A2TRJ1 DNA polymerase III, epsilon subunit n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRJ1_9FLAO Length = 229 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 4/85 (4%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 + + F+ D ET G DR + ++ + + K P Sbjct: 38 SKGLQNTRFVVFDTETTGLDYKKDRILSLGGVAVVGNQVIVADTLELFLKQD---FYNPD 94 Query: 62 AVLITGITPQEARAKGENEAAFAAR 86 + I GI Q K NE A+ Sbjct: 95 SAQIHGILKQGNYLK-VNEKEAIAQ 118 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Query: 2 TDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 61 T F D ET G P DR + A +R D+ + E + G Sbjct: 41 TPPPFGAGFAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWST---RLNPQRTV--G 95 Query: 62 AVLITGITPQEAR 74 A I GIT + Sbjct: 96 ATWIHGITDADVA 108 >UniRef50_C0QPN1 DNA polymerase III subunit epsilon n=1 Tax=Persephonella marina EX-H1 RepID=C0QPN1_PERMH Length = 206 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + TF D ET G D A++ I FY + +P+ +LI Sbjct: 31 NKITFCSFDLETTGLDVEKDEIISIGAVKIKE--MKIDLSTSFYRIVKPERIPEKENILI 88 Query: 66 TGITPQEARA 75 IT E + Sbjct: 89 HSITASEMKK 98 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 3/69 (4%) Query: 7 QPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 + D ET G +P+ D Q A R + E F P + I Sbjct: 538 DLAYTVFDTETTGLNPSDGDEIIQIGATRI--SGGKLRRQESFEQLVDPQRPIPPAGIPI 595 Query: 66 TGITPQEAR 74 GI P Sbjct: 596 HGIKPDMVA 604 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 5/77 (6%) Query: 11 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 70 + D ET G P + A+R ++ F+ + +TG++ Sbjct: 4 IIVDLETTGLDPERAEILEIGALRV-RGGEIVDT---FHTLVRPERPIPDEITRLTGLSD 59 Query: 71 QEARAKGENEAAFAARI 87 + +E R Sbjct: 60 ADVAGAP-SEREALMRF 75 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%) Query: 6 KQPTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 + F+ D ET G P D+ Q AA+ ++ I E Y P Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIEN--GQITERFSKYINPNKS--IPAFIEQ 57 Query: 65 ITGITPQEARAKGENEAAF 83 +TGI+ Q + EA Sbjct: 58 LTGISNQMVENEQPFEAVA 76 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%) Query: 5 DKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 64 T F D ET G + + A +R D+ + KP P A+ Sbjct: 26 PHLRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALA 85 Query: 65 ITGITPQE 72 + G + +E Sbjct: 86 VCGYSDEE 93 >UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315G7_DESDG Length = 239 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 F D E G P D A+R + G+ Y +P A LI IT Sbjct: 41 FAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARP--ATLIHRIT 98 Query: 70 PQEA 73 P + Sbjct: 99 PAQL 102 >UniRef50_B4VF18 DNA polymerase III subunit epsilon n=9 Tax=Streptomyces RepID=B4VF18_9ACTO Length = 246 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 4/80 (5%) Query: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 69 + D ET GT P R A + V A I GI+ Sbjct: 9 LVGFDLETTGTEPGESRIVTAAVVEV-RGGEVRERRGWLA---DPGIPIPEQASAIHGIS 64 Query: 70 PQEARAKGENEAAFAARIHS 89 A A+G A + + Sbjct: 65 TARAVAEGRPVREVAQEVAA 84 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 4/70 (5%) Query: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68 + D ET G + DR Q + + + I E KP A+ + I Sbjct: 2 KIVILDTETTG-NKEEDRIIQLSYLVLNENL-EIEEIHDELVKPP--LPISFEAMAVHHI 57 Query: 69 TPQEARAKGE 78 T + K Sbjct: 58 TNEMVEDKPL 67 >UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIR1_FIBSS Length = 215 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 4/73 (5%) Query: 7 QPTFLFHDYETFGTHPALDRPAQFAAIRTD---SEFNVIGEPE-VFYCKPADDYLPQPGA 62 P F+ D ET G D + A++ V+ + F + L A Sbjct: 5 PPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPNMLIPAEA 64 Query: 63 VLITGITPQEARA 75 + IT + Sbjct: 65 TNVNHITDKMVEN 77 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 2/71 (2%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 K ++ D ET G DR AA++ + I E P D + Sbjct: 401 KNHNYVVLDIETTGFSKTRDRIISIAAVKIQN--GKIIEYFDELINPGKDIKISNLIQRL 458 Query: 66 TGITPQEARAK 76 T I+ + K Sbjct: 459 TNISDEILLNK 469 >UniRef50_Q5YSF0 Putative DNA polymerase n=1 Tax=Nocardia farcinica RepID=Q5YSF0_NOCFA Length = 229 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 5/84 (5%) Query: 6 KQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 65 Q D ET P R + IR D +V + A I Sbjct: 4 TQLPLAAFDLETTSADPHSARVVTASIIRVDGG-DVRARNWIA----NPHIPIPAEATEI 58 Query: 66 TGITPQEARAKGENEAAFAARIHS 89 G T + + G A A + + Sbjct: 59 HGYTDEYVQKHGRPHADVIAEVTA 82 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 8 PTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67 P ++ D ET G +P DR + AA+R + P +TG Sbjct: 3 PCYVLLDLETTGGNPVHDRITEIAAVRI-ENGQEVARWSTL---VNPGCSISPFIQHLTG 58 Query: 68 ITPQEARAKGENEAAFAAR 86 I+ +G A+ Sbjct: 59 ISNAMV--RGAPGFETVAQ 75 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.152 0.433 Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 630,482,832 Number of Sequences: 3077464 Number of extensions: 25758835 Number of successful extensions: 52705 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 392 Number of HSP's successfully gapped in prelim test: 513 Number of HSP's that attempted gapping in prelim test: 51879 Number of HSP's gapped (non-prelim): 914 length of query: 89 length of database: 1,040,396,356 effective HSP length: 59 effective length of query: 30 effective length of database: 858,825,980 effective search space: 25764779400 effective search space used: 25764779400 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 87 (37.9 bits)