 |
| Job Description | C0Z3X9 | | Confidence | 6.50% | Date | Thu Jan 5 10:55:44 GMT 2012 |
| Rank | 55 | Aligned Residues | 21 |
| % Identity | 24% | Template | c3iydB_ |
| PDB info |
PDB header:transcription/dna | Chain: B: PDB Molecule:dna-directed rna polymerase subunit alpha; |
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
|
| Resolution | 19.80 Å |
|
|   |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
20 | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
| . |
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| Query Sequence |   |
D | T | D | K | Q | P | T | F | L | F | H | D | Y | E | T | F | G | . |
T | H | P | A |
| Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
| . |
|   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |
|   |
|   |
|   |
|
|
|   |
|
|
|   |
|   |
| Template Sequence |   |
E | Q | R | T | D | L | D | K | L | V | I | E | M | E | T | N | G | T | I | D | P | E |
| Template Known Secondary structure |   |
S | S |
| S | S | B |
|
|
|
|  |  |  |  |  |
| S | S | S |
|  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
193 | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|