BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (118 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76196 Uncharacterized protein ydiL n=81 Tax=Enterobact... 186 1e-46 UniRef50_B7LQ87 Putative uncharacterized protein n=5 Tax=Enterob... 182 3e-45 UniRef50_Q1YXS1 Putative uncharacterized protein n=2 Tax=Photoba... 148 4e-35 UniRef50_Q321E8 Putative uncharacterized protein n=1 Tax=Shigell... 137 1e-31 UniRef50_Q70LP0 Putative uncharacterized protein n=1 Tax=Pasteur... 121 8e-27 UniRef50_C6XCZ0 Putative uncharacterized protein n=1 Tax=Methylo... 115 5e-25 UniRef50_C0AVY6 Putative uncharacterized protein n=1 Tax=Proteus... 51 1e-05 UniRef50_C0DT60 Putative uncharacterized protein n=1 Tax=Eikenel... 45 8e-04 UniRef50_C7JI90 Chromosome partitioning protein ParA/MinD/MRP/so... 42 0.004 >UniRef50_P76196 Uncharacterized protein ydiL n=81 Tax=Enterobacteriaceae RepID=YDIL_ECOLI Length = 118 Score = 186 bits (473), Expect = 1e-46, Method: Composition-based stats. Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK Sbjct: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC Sbjct: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 >UniRef50_B7LQ87 Putative uncharacterized protein n=5 Tax=Enterobacteriaceae RepID=B7LQ87_ESCF3 Length = 167 Score = 182 bits (462), Expect = 3e-45, Method: Composition-based stats. Identities = 80/118 (67%), Positives = 94/118 (79%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN YEL+ALR IFAMT ECA WIA G+ +W+QWENG IP V+E LL MR QRK Sbjct: 50 MNGYELKALRLIFAMTTQECAQWIALDGNEANWQQWENGDHDIPANVIETLLTMRSQRKD 109 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 +HAII KIN+RIGNNTMR+F DL++FQ VYP+ +F++WKIYQSVA ELYAHDLERLC Sbjct: 110 RIHAIISKINSRIGNNTMRYFNDLSSFQAVYPNADFLEWKIYQSVANELYAHDLERLC 167 >UniRef50_Q1YXS1 Putative uncharacterized protein n=2 Tax=Photobacterium profundum RepID=Q1YXS1_PHOPR Length = 164 Score = 148 bits (374), Expect = 4e-35, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 5/116 (4%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN ELQA+R I + + E A I S +W+ WE+G AIPD + ++ ++ Q R+ Sbjct: 6 MNHVELQAIRKILMLEVTEAADVIGNGVSSSTWQSWESGSLAIPDEIQAEIYSLCQMRET 65 Query: 61 HLHAIIEKINNRIGNN-----TMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYA 111 L +++ ++ + T+RF+ L AF YP+ N + W+++QSV + L+A Sbjct: 66 LLGETFKELYDKNDGSFNAVGTLRFYSTLKAFLIDYPESNHLCWRLHQSVCSSLFA 121 >UniRef50_Q321E8 Putative uncharacterized protein n=1 Tax=Shigella boydii Sb227 RepID=Q321E8_SHIBS Length = 107 Score = 137 bits (344), Expect = 1e-31, Method: Composition-based stats. Identities = 88/90 (97%), Positives = 88/90 (97%) Query: 22 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF 81 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF Sbjct: 3 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF 62 Query: 82 PDLTAFQRVYPDGNFIDWKIYQSVAAELYA 111 PDLTAFQRVYPDGNFIDWKIYQSVAAE A Sbjct: 63 PDLTAFQRVYPDGNFIDWKIYQSVAAEGNA 92 >UniRef50_Q70LP0 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q70LP0_PASMU Length = 135 Score = 121 bits (302), Expect = 8e-27, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 13/113 (11%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN ELQ LR + I E A + + + +W++WE G +P V +Q+ + Sbjct: 2 MNNNELQMLRKALFLDIVEAAELVG-SVSARTWQRWEKGDINVPFDV--------EQKMR 52 Query: 61 HLHAIIEKINNRIGNNTMRF---FPDLTAFQRVYPDGNFIDWKIYQSVAAELY 110 L+ I K+ N + + + + + D F + + W++YQSV + LY Sbjct: 53 KLNHIHNKVFNLVLSESSEYCYKYYDYEQFTSRFGTSK-LKWRLYQSVLSRLY 104 >UniRef50_C6XCZ0 Putative uncharacterized protein n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XCZ0_METSD Length = 153 Score = 115 bits (287), Expect = 5e-25, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN LQALR T E A +A +W+ WE+ IPD + L + +++ Sbjct: 1 MNGTTLQALRLSLGYTPQEAAYMVA-AVPLATWKNWESNAQPIPDEIENTLRKLVSYKRQ 59 Query: 61 HLHAI------IEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAEL 109 + I + + ++ ++ T + D + WK + A L Sbjct: 60 LIEEARGQLLHICNVQGMPESLSLTYYGTETDWL-TQQDATALQWKPHCMAMAAL 113 >UniRef50_C0AVY6 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AVY6_9ENTR Length = 123 Score = 50.9 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M EL+ LR + ++ E ++ I + ++ +W++WE G AIP V++Q+ + R + Sbjct: 1 MTNLELRQLRQLLFLSPSEASSEIGR-VETRTWQRWEKGDRAIPYDVIQQMQMLSLTRLE 59 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERL 117 L + + ++F L + + + I W++ QS++A+L + + + Sbjct: 60 LL-----SVEADHSHYIYQYFDSLDEYVKAGGTHSVIKWRLSQSISAQLLSEKMAEI 111 >UniRef50_C0DT60 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT60_EIKCO Length = 156 Score = 44.8 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGD------SESWRQWENGKCAIPDRVVEQLLAM 54 M EL+ALR +T E A +A D +E W QWENG IP VV + Sbjct: 1 MFPIELKALRRNLGLTQAEAAQALAANVDFPHGASAEEWAQWENGAAPIPLHVVRAVETR 60 Query: 55 RQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFI----DWKIYQSVAAELY 110 Q+ + + E++ ++ YP+ N W+I QSVA E+ Sbjct: 61 LNQKYQAIDQYAEQLEAQMQGGN-------AVVVLWYPEPNACPDLASWRISQSVAGEVA 113 Query: 111 A 111 A Sbjct: 114 A 114 >UniRef50_C7JI90 Chromosome partitioning protein ParA/MinD/MRP/soj n=8 Tax=Acetobacter pasteurianus RepID=C7JI90_ACEP3 Length = 351 Score = 42.5 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 3 AYELQALRHIFAMTIDECATWI----AQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQR 58 L+ +R ++ E + + ++ D + +WENG+ IP V+ +L + ++R Sbjct: 7 GNTLKKIRTNLGLSQAELKSLLNERLSRNYDRHTISRWENGRQPIPSEVLNELQQLIERR 66 Query: 59 KKHLHAII 66 + L I+ Sbjct: 67 PQPLQVIV 74 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76196 Uncharacterized protein ydiL n=81 Tax=Enterobact... 168 6e-41 UniRef50_B7LQ87 Putative uncharacterized protein n=5 Tax=Enterob... 166 3e-40 UniRef50_Q1YXS1 Putative uncharacterized protein n=2 Tax=Photoba... 135 4e-31 UniRef50_Q321E8 Putative uncharacterized protein n=1 Tax=Shigell... 123 2e-27 UniRef50_Q70LP0 Putative uncharacterized protein n=1 Tax=Pasteur... 111 9e-24 UniRef50_C6XCZ0 Putative uncharacterized protein n=1 Tax=Methylo... 109 3e-23 UniRef50_C0AVY6 Putative uncharacterized protein n=1 Tax=Proteus... 96 3e-19 UniRef50_C0DT60 Putative uncharacterized protein n=1 Tax=Eikenel... 90 2e-17 Sequences not found previously or not previously below threshold: UniRef50_C7JI90 Chromosome partitioning protein ParA/MinD/MRP/so... 50 2e-05 UniRef50_Q82P76 Putative uncharacterized protein n=1 Tax=Strepto... 46 3e-04 UniRef50_B4F341 Putative helix turn helix protein n=2 Tax=Rhodoc... 43 0.003 UniRef50_C1G5S9 Putative uncharacterized protein n=1 Tax=Paracoc... 42 0.005 UniRef50_A4TG01 Putative uncharacterized protein n=1 Tax=Mycobac... 41 0.010 UniRef50_A8V2S1 Putative uncharacterized protein n=1 Tax=Hydroge... 41 0.010 UniRef50_C7R279 Putative uncharacterized protein n=1 Tax=Jonesia... 39 0.033 UniRef50_A3K1Y6 Putative uncharacterized protein n=1 Tax=Sagittu... 39 0.044 UniRef50_D0ZEQ0 Putative uncharacterized protein n=1 Tax=Edwards... 39 0.048 UniRef50_C6BPE1 Putative uncharacterized protein n=1 Tax=Ralston... 39 0.049 UniRef50_Q12J40 Transciptional regulator n=9 Tax=Shewanella RepI... 39 0.061 UniRef50_A5EUG4 Putative uncharacterized protein n=1 Tax=Bradyrh... 38 0.076 >UniRef50_P76196 Uncharacterized protein ydiL n=81 Tax=Enterobacteriaceae RepID=YDIL_ECOLI Length = 118 Score = 168 bits (424), Expect = 6e-41, Method: Composition-based stats. Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK Sbjct: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC Sbjct: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 >UniRef50_B7LQ87 Putative uncharacterized protein n=5 Tax=Enterobacteriaceae RepID=B7LQ87_ESCF3 Length = 167 Score = 166 bits (419), Expect = 3e-40, Method: Composition-based stats. Identities = 80/118 (67%), Positives = 94/118 (79%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN YEL+ALR IFAMT ECA WIA G+ +W+QWENG IP V+E LL MR QRK Sbjct: 50 MNGYELKALRLIFAMTTQECAQWIALDGNEANWQQWENGDHDIPANVIETLLTMRSQRKD 109 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 +HAII KIN+RIGNNTMR+F DL++FQ VYP+ +F++WKIYQSVA ELYAHDLERLC Sbjct: 110 RIHAIISKINSRIGNNTMRYFNDLSSFQAVYPNADFLEWKIYQSVANELYAHDLERLC 167 >UniRef50_Q1YXS1 Putative uncharacterized protein n=2 Tax=Photobacterium profundum RepID=Q1YXS1_PHOPR Length = 164 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN ELQA+R I + + E A I S +W+ WE+G AIPD + ++ ++ Q R+ Sbjct: 6 MNHVELQAIRKILMLEVTEAADVIGNGVSSSTWQSWESGSLAIPDEIQAEIYSLCQMRET 65 Query: 61 HLHAIIEKINNRIGN-----NTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAH 112 L +++ ++ T+RF+ L AF YP+ N + W+++QSV + L+A Sbjct: 66 LLGETFKELYDKNDGSFNAVGTLRFYSTLKAFLIDYPESNHLCWRLHQSVCSSLFAE 122 >UniRef50_Q321E8 Putative uncharacterized protein n=1 Tax=Shigella boydii Sb227 RepID=Q321E8_SHIBS Length = 107 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 88/90 (97%), Positives = 88/90 (97%) Query: 22 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF 81 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF Sbjct: 3 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF 62 Query: 82 PDLTAFQRVYPDGNFIDWKIYQSVAAELYA 111 PDLTAFQRVYPDGNFIDWKIYQSVAAE A Sbjct: 63 PDLTAFQRVYPDGNFIDWKIYQSVAAEGNA 92 >UniRef50_Q70LP0 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q70LP0_PASMU Length = 135 Score = 111 bits (276), Expect = 9e-24, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 13/113 (11%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN ELQ LR + I E A + + + +W++WE G +P V +Q+ + Sbjct: 2 MNNNELQMLRKALFLDIVEAAELVG-SVSARTWQRWEKGDINVPFDV--------EQKMR 52 Query: 61 HLHAIIEKINNRIGNNTMRF---FPDLTAFQRVYPDGNFIDWKIYQSVAAELY 110 L+ I K+ N + + + + + D F + + W++YQSV + LY Sbjct: 53 KLNHIHNKVFNLVLSESSEYCYKYYDYEQFTSRFGTSK-LKWRLYQSVLSRLY 104 >UniRef50_C6XCZ0 Putative uncharacterized protein n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XCZ0_METSD Length = 153 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 8/118 (6%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN LQALR T E A +A +W+ WE+ IPD + L + +++ Sbjct: 1 MNGTTLQALRLSLGYTPQEAAYMVA-AVPLATWKNWESNAQPIPDEIENTLRKLVSYKRQ 59 Query: 61 HLHAI------IEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAH 112 + I + + ++ ++ T + D + WK + A L Sbjct: 60 LIEEARGQLLHICNVQGMPESLSLTYYGTETDWL-TQQDATALQWKPHCMAMAALAEE 116 >UniRef50_C0AVY6 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AVY6_9ENTR Length = 123 Score = 96.0 bits (237), Expect = 3e-19, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M EL+ LR + ++ E ++ I + ++ +W++WE G AIP V++Q+ + R + Sbjct: 1 MTNLELRQLRQLLFLSPSEASSEIGR-VETRTWQRWEKGDRAIPYDVIQQMQMLSLTRLE 59 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERL 117 L + + ++F L + + + I W++ QS++A+L + + + Sbjct: 60 LL-----SVEADHSHYIYQYFDSLDEYVKAGGTHSVIKWRLSQSISAQLLSEKMAEI 111 >UniRef50_C0DT60 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT60_EIKCO Length = 156 Score = 90.2 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGD------SESWRQWENGKCAIPDRVVEQLLAM 54 M EL+ALR +T E A +A D +E W QWENG IP VV + Sbjct: 1 MFPIELKALRRNLGLTQAEAAQALAANVDFPHGASAEEWAQWENGAAPIPLHVVRAVETR 60 Query: 55 RQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFI----DWKIYQSVAAELY 110 Q+ + + E++ ++ YP+ N W+I QSVA E+ Sbjct: 61 LNQKYQAIDQYAEQLEAQMQGGN-------AVVVLWYPEPNACPDLASWRISQSVAGEVA 113 Query: 111 A 111 A Sbjct: 114 A 114 >UniRef50_C7JI90 Chromosome partitioning protein ParA/MinD/MRP/soj n=8 Tax=Acetobacter pasteurianus RepID=C7JI90_ACEP3 Length = 351 Score = 50.2 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 3 AYELQALRHIFAMTIDECATWI----AQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQR 58 L+ +R ++ E + + ++ D + +WENG+ IP V+ +L + ++R Sbjct: 7 GNTLKKIRTNLGLSQAELKSLLNERLSRNYDRHTISRWENGRQPIPSEVLNELQQLIERR 66 Query: 59 KKHLHAII 66 + L I+ Sbjct: 67 PQPLQVIV 74 >UniRef50_Q82P76 Putative uncharacterized protein n=1 Tax=Streptomyces avermitilis RepID=Q82P76_STRAW Length = 145 Score = 46.3 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 6/113 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M E + +R +T A + + +WE G+ IP V L + + + Sbjct: 16 MTPAEFRVVREFLGLTGGWLAEHVG--VSPNTVERWEQGEERIPAAVRGALGDLGRLTGE 73 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNF-IDWKIYQSVAAELYAH 112 + ++ + + + + D + +P+ + W +++V A + Sbjct: 74 FVAEVVNSLVDLPEPGIVTYRDD-AEYHAAHPESGYPAAW--HRAVVARVAQE 123 >UniRef50_B4F341 Putative helix turn helix protein n=2 Tax=Rhodococcus equi RepID=B4F341_COREQ Length = 123 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 2 NAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKH 61 + EL+A R + + E A + D R+WE GK IP+ VV +L + Q + Sbjct: 8 SGAELRARRELLGLNAQETAALLG--VDERVIRRWEQGK-PIPEGVVAELAQLEQVQDDV 64 Query: 62 LHAI 65 + + Sbjct: 65 IREL 68 >UniRef50_C1G5S9 Putative uncharacterized protein n=1 Tax=Paracoccidioides brasiliensis Pb18 RepID=C1G5S9_PARBD Length = 184 Score = 42.5 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN +ALR I I + W +W++ + +P ++V + +R++ Sbjct: 28 MNQLTRRALRVIIPTISTHNTPVIYLPIATSCWYKWQS-ERPVPLKIVNSCRSNDVRRER 86 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFID----------WKIYQSVAAELY 110 + +I + N + + F+ P+G + W + Q Sbjct: 87 VIEQLIARQNPSHRGCVI-IRTCIEGFKADGPEGKHLCLVYDPMREPLWMLQQRFVNRRL 145 Query: 111 A 111 A Sbjct: 146 A 146 >UniRef50_A4TG01 Putative uncharacterized protein n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4TG01_MYCGI Length = 144 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQ 57 M + + +R ++ A + D + R+WE+G + VV L + +Q Sbjct: 1 MTPADFKTIRESLGLSAQWLADAVG--VDQRTVRRWEDGALPLRTDVVALLTQLDKQ 55 >UniRef50_A8V2S1 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2S1_9AQUI Length = 128 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGK---CAIPDRVVEQLLAMRQQ 57 M E++ LR +T +E A + + + +WENGK +E+L + ++ Sbjct: 1 MTGKEIRELRKKLGLTQEEFAQLLGVGFTTVN--RWENGKSEPRGQALEALEKLRTLIEE 58 Query: 58 RKKHLHAIIEKI 69 ++ IE + Sbjct: 59 AEEGKDFTIEDL 70 >UniRef50_C7R279 Putative uncharacterized protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R279_JONDD Length = 135 Score = 39.4 bits (90), Expect = 0.033, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 7/118 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGD-SESWRQWENGKCAIPDRVVEQLLAMRQQRK 59 MN ALR + A+ + S +W P V LL M + Sbjct: 1 MNPATFNALRSAIGLEQQTIASALGLGAHGKRSVERWCATITP-PAHAVTYLLEMVDRYD 59 Query: 60 KHLHAIIEKINNRIGNN---TMRFFPDLTAFQRVYPDGNFIDWKIYQSVA--AELYAH 112 K L +E+I+ + F + +F + + W +Y S A LYAH Sbjct: 60 KFLEGEMEQIDLAADTGRAIDLIVFKNEASFLTATDGKSGLPWSMYSSAIQQAALYAH 117 >UniRef50_A3K1Y6 Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K1Y6_9RHOB Length = 150 Score = 39.0 bits (89), Expect = 0.044, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 3 AYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLA 53 Y L+ LR ++ E A + + W ++ENG+ AI D L+ Sbjct: 71 GYRLRLLREALGLSPSEMADMLG--IERTYWSRFENGRRAINDTTAALLVT 119 >UniRef50_D0ZEQ0 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEQ0_EDWTE Length = 69 Score = 39.0 bits (89), Expect = 0.048, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHD 113 L ++++ + ++++F+ A+ D + + W++ QSVAA L+A D Sbjct: 1 MLSHQRQEMSKAVAPHSIQFYRTRDAYTSSTGDQSAVMWRLSQSVAAALFAED 53 >UniRef50_C6BPE1 Putative uncharacterized protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPE1_RALP1 Length = 194 Score = 39.0 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 14/125 (11%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQT--GDSESWRQWENGKCAIPDRVVEQL------- 51 M+ EL+ R ++I W+A E WE G+C +P+ V E L Sbjct: 1 MSPAELRTFRESLGLSIP----WMANNFNVPLERVTGWEIGRCPLPEGVTEALVRIDLLI 56 Query: 52 LAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYA 111 + R L A ++ +RF+ D + R YP+ + Y ++ L Sbjct: 57 ETTVESRVAALLAARDRGELPGAAVLLRFWNDEDLW-RFYPELQPLSSAAYGTLLTRLSR 115 Query: 112 HDLER 116 R Sbjct: 116 ELRAR 120 >UniRef50_Q12J40 Transciptional regulator n=9 Tax=Shewanella RepID=Q12J40_SHEDO Length = 76 Score = 38.6 bits (88), Expect = 0.061, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 6 LQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDR 46 L+ R I + DE A ++++WENG C +P Sbjct: 13 LKTGRAIKGFSQDEVAAVYG--VSRRTYQRWENGDCNVPSN 51 >UniRef50_A5EUG4 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EUG4_BRASB Length = 141 Score = 38.2 bits (87), Expect = 0.076, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN EL+ R + T ++ A + + WE +P V + ++ K+ Sbjct: 1 MNGLELKKWRKLLNYTQEQAANEFG--VTRPTIQNWEYEITPVPVAVDLASRQLLRRWKQ 58 Query: 61 H 61 Sbjct: 59 R 59 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LQ87 Putative uncharacterized protein n=5 Tax=Enterob... 169 2e-41 UniRef50_P76196 Uncharacterized protein ydiL n=81 Tax=Enterobact... 169 3e-41 UniRef50_Q1YXS1 Putative uncharacterized protein n=2 Tax=Photoba... 139 2e-32 UniRef50_Q321E8 Putative uncharacterized protein n=1 Tax=Shigell... 122 3e-27 UniRef50_Q70LP0 Putative uncharacterized protein n=1 Tax=Pasteur... 115 4e-25 UniRef50_Q82P76 Putative uncharacterized protein n=1 Tax=Strepto... 113 2e-24 UniRef50_C6XCZ0 Putative uncharacterized protein n=1 Tax=Methylo... 112 2e-24 UniRef50_C0AVY6 Putative uncharacterized protein n=1 Tax=Proteus... 99 6e-20 UniRef50_C0DT60 Putative uncharacterized protein n=1 Tax=Eikenel... 92 6e-18 UniRef50_C7JI90 Chromosome partitioning protein ParA/MinD/MRP/so... 79 4e-14 Sequences not found previously or not previously below threshold: UniRef50_A4TG01 Putative uncharacterized protein n=1 Tax=Mycobac... 55 8e-07 UniRef50_B4F341 Putative helix turn helix protein n=2 Tax=Rhodoc... 51 9e-06 UniRef50_C6BPE1 Putative uncharacterized protein n=1 Tax=Ralston... 50 3e-05 UniRef50_A8V2S1 Putative uncharacterized protein n=1 Tax=Hydroge... 47 1e-04 UniRef50_C7R279 Putative uncharacterized protein n=1 Tax=Jonesia... 47 2e-04 UniRef50_A5EUG4 Putative uncharacterized protein n=1 Tax=Bradyrh... 46 5e-04 UniRef50_B8FIU9 Putative uncharacterized protein n=3 Tax=Deltapr... 45 7e-04 UniRef50_A7BW93 Transcriptional regulator, XRE family n=1 Tax=Be... 45 9e-04 UniRef50_A0YQ49 Putative uncharacterized protein n=1 Tax=Lyngbya... 44 0.001 UniRef50_Q12J40 Transciptional regulator n=9 Tax=Shewanella RepI... 44 0.001 UniRef50_A3K1Y6 Putative uncharacterized protein n=1 Tax=Sagittu... 44 0.002 UniRef50_A4TV76 Putative uncharacterized protein n=1 Tax=Magneto... 44 0.002 UniRef50_D2PN89 Transcriptional regulator, XRE family n=1 Tax=Kr... 43 0.002 UniRef50_Q6LSJ2 Putative uncharacterized protein LP_2003 n=1 Tax... 43 0.003 UniRef50_A6N226 Putative uncharacterized protein n=1 Tax=Microba... 43 0.003 UniRef50_A0LH57 Transcriptional regulator, XRE family n=1 Tax=Sy... 42 0.005 UniRef50_P11408 Modification methylase MspI n=3 Tax=Proteobacter... 42 0.008 UniRef50_Q856L8 Gp76 n=1 Tax=Mycobacterium phage Corndog RepID=Q... 41 0.008 UniRef50_D2LEA3 Transcriptional regulator, XRE family n=1 Tax=Rh... 41 0.010 UniRef50_A7B1I5 Putative uncharacterized protein n=1 Tax=Ruminoc... 41 0.011 UniRef50_D0ZEQ0 Putative uncharacterized protein n=1 Tax=Edwards... 41 0.017 UniRef50_C2EQ71 Transcriptional regulator n=2 Tax=Lactobacillus ... 41 0.017 UniRef50_Q8UI35 Transcriptional regulator n=2 Tax=Rhizobium/Agro... 40 0.027 UniRef50_A8ZVA3 Putative uncharacterized protein n=1 Tax=Desulfo... 40 0.028 UniRef50_C8N6E2 XRE family transcriptional regulator n=1 Tax=Car... 40 0.030 UniRef50_B3SZW6 Putative uncharacterized protein n=1 Tax=uncultu... 39 0.040 UniRef50_B1Z950 Putative uncharacterized protein n=1 Tax=Methylo... 39 0.048 UniRef50_C5V530 Helix-hairpin-helix DNA-binding motif-containing... 38 0.085 >UniRef50_B7LQ87 Putative uncharacterized protein n=5 Tax=Enterobacteriaceae RepID=B7LQ87_ESCF3 Length = 167 Score = 169 bits (428), Expect = 2e-41, Method: Composition-based stats. Identities = 80/118 (67%), Positives = 94/118 (79%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN YEL+ALR IFAMT ECA WIA G+ +W+QWENG IP V+E LL MR QRK Sbjct: 50 MNGYELKALRLIFAMTTQECAQWIALDGNEANWQQWENGDHDIPANVIETLLTMRSQRKD 109 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 +HAII KIN+RIGNNTMR+F DL++FQ VYP+ +F++WKIYQSVA ELYAHDLERLC Sbjct: 110 RIHAIISKINSRIGNNTMRYFNDLSSFQAVYPNADFLEWKIYQSVANELYAHDLERLC 167 >UniRef50_P76196 Uncharacterized protein ydiL n=81 Tax=Enterobacteriaceae RepID=YDIL_ECOLI Length = 118 Score = 169 bits (427), Expect = 3e-41, Method: Composition-based stats. Identities = 118/118 (100%), Positives = 118/118 (100%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK Sbjct: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC Sbjct: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERLC 118 >UniRef50_Q1YXS1 Putative uncharacterized protein n=2 Tax=Photobacterium profundum RepID=Q1YXS1_PHOPR Length = 164 Score = 139 bits (350), Expect = 2e-32, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 5/117 (4%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN ELQA+R I + + E A I S +W+ WE+G AIPD + ++ ++ Q R+ Sbjct: 6 MNHVELQAIRKILMLEVTEAADVIGNGVSSSTWQSWESGSLAIPDEIQAEIYSLCQMRET 65 Query: 61 HLHAIIEKINNRIGN-----NTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAH 112 L +++ ++ T+RF+ L AF YP+ N + W+++QSV + L+A Sbjct: 66 LLGETFKELYDKNDGSFNAVGTLRFYSTLKAFLIDYPESNHLCWRLHQSVCSSLFAE 122 >UniRef50_Q321E8 Putative uncharacterized protein n=1 Tax=Shigella boydii Sb227 RepID=Q321E8_SHIBS Length = 107 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 88/90 (97%), Positives = 88/90 (97%) Query: 22 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF 81 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF Sbjct: 3 TWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFF 62 Query: 82 PDLTAFQRVYPDGNFIDWKIYQSVAAELYA 111 PDLTAFQRVYPDGNFIDWKIYQSVAAE A Sbjct: 63 PDLTAFQRVYPDGNFIDWKIYQSVAAEGNA 92 >UniRef50_Q70LP0 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q70LP0_PASMU Length = 135 Score = 115 bits (288), Expect = 4e-25, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 13/114 (11%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN ELQ LR + I E A + + + +W++WE G +P V +Q+ + Sbjct: 2 MNNNELQMLRKALFLDIVEAAELVG-SVSARTWQRWEKGDINVPFDV--------EQKMR 52 Query: 61 HLHAIIEKINNRIGNNTMRF---FPDLTAFQRVYPDGNFIDWKIYQSVAAELYA 111 L+ I K+ N + + + + + D F + + W++YQSV + LY Sbjct: 53 KLNHIHNKVFNLVLSESSEYCYKYYDYEQFTSRFGTSK-LKWRLYQSVLSRLYQ 105 >UniRef50_Q82P76 Putative uncharacterized protein n=1 Tax=Streptomyces avermitilis RepID=Q82P76_STRAW Length = 145 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 6/113 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M E + +R +T A + + +WE G+ IP V L + + + Sbjct: 16 MTPAEFRVVREFLGLTGGWLAEHVG--VSPNTVERWEQGEERIPAAVRGALGDLGRLTGE 73 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNF-IDWKIYQSVAAELYAH 112 + ++ + + + + D + +P+ + W +++V A + Sbjct: 74 FVAEVVNSLVDLPEPGIVTYRDD-AEYHAAHPESGYPAAW--HRAVVARVAQE 123 >UniRef50_C6XCZ0 Putative uncharacterized protein n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XCZ0_METSD Length = 153 Score = 112 bits (281), Expect = 2e-24, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 8/118 (6%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN LQALR T E A +A +W+ WE+ IPD + L + +++ Sbjct: 1 MNGTTLQALRLSLGYTPQEAAYMVA-AVPLATWKNWESNAQPIPDEIENTLRKLVSYKRQ 59 Query: 61 HLHAI------IEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAH 112 + I + + ++ ++ T + D + WK + A L Sbjct: 60 LIEEARGQLLHICNVQGMPESLSLTYYGTETDWL-TQQDATALQWKPHCMAMAALAEE 116 >UniRef50_C0AVY6 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AVY6_9ENTR Length = 123 Score = 98.7 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 6/117 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M EL+ LR + ++ E ++ I + ++ +W++WE G AIP V++Q+ + R + Sbjct: 1 MTNLELRQLRQLLFLSPSEASSEIGR-VETRTWQRWEKGDRAIPYDVIQQMQMLSLTRLE 59 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHDLERL 117 L + + ++F L + + + I W++ QS++A+L + + + Sbjct: 60 LL-----SVEADHSHYIYQYFDSLDEYVKAGGTHSVIKWRLSQSISAQLLSEKMAEI 111 >UniRef50_C0DT60 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DT60_EIKCO Length = 156 Score = 91.8 bits (226), Expect = 6e-18, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGD------SESWRQWENGKCAIPDRVVEQLLAM 54 M EL+ALR +T E A +A D +E W QWENG IP VV + Sbjct: 1 MFPIELKALRRNLGLTQAEAAQALAANVDFPHGASAEEWAQWENGAAPIPLHVVRAVETR 60 Query: 55 RQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFI----DWKIYQSVAAELY 110 Q+ + + E++ ++ YP+ N W+I QSVA E+ Sbjct: 61 LNQKYQAIDQYAEQLEAQMQGGN-------AVVVLWYPEPNACPDLASWRISQSVAGEVA 113 Query: 111 A 111 A Sbjct: 114 A 114 >UniRef50_C7JI90 Chromosome partitioning protein ParA/MinD/MRP/soj n=8 Tax=Acetobacter pasteurianus RepID=C7JI90_ACEP3 Length = 351 Score = 79.1 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 3 AYELQALRHIFAMTIDECATWI----AQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQR 58 L+ +R ++ E + + ++ D + +WENG+ IP V+ +L + ++R Sbjct: 7 GNTLKKIRTNLGLSQAELKSLLNERLSRNYDRHTISRWENGRQPIPSEVLNELQQLIERR 66 Query: 59 KKHLHAII 66 + L I+ Sbjct: 67 PQPLQVIV 74 >UniRef50_A4TG01 Putative uncharacterized protein n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4TG01_MYCGI Length = 144 Score = 54.8 bits (130), Expect = 8e-07, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M + + +R ++ A + D + R+WE+G + VV L + +Q Sbjct: 1 MTPADFKTIRESLGLSAQWLADAVG--VDQRTVRRWEDGALPLRTDVVALLTQLDKQMDA 58 Query: 61 HLHAIIEKINNRIGNN 76 + + +I + Sbjct: 59 DVTDELARITAELAPG 74 >UniRef50_B4F341 Putative helix turn helix protein n=2 Tax=Rhodococcus equi RepID=B4F341_COREQ Length = 123 Score = 51.3 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 2 NAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKH 61 + EL+A R + + E A + D R+WE GK IP+ VV +L + Q + Sbjct: 8 SGAELRARRELLGLNAQETAALLG--VDERVIRRWEQGK-PIPEGVVAELAQLEQVQDDV 64 Query: 62 LHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAA 107 + + + + + D V PD + + ++ AA Sbjct: 65 IRELEDA--GKDSGVITTYKGD-----GVVPDRPELPARWHRVAAA 103 >UniRef50_C6BPE1 Putative uncharacterized protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPE1_RALP1 Length = 194 Score = 49.8 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 10/123 (8%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M+ EL+ R ++I A E WE G+C +P+ V E L+ + + Sbjct: 1 MSPAELRTFRESLGLSIPWMAN--NFNVPLERVTGWEIGRCPLPEGVTEALVRIDLLIET 58 Query: 61 HLHAIIEKINNRIGNN-------TMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHD 113 + + + + +RF+ D + R YP+ + Y ++ L Sbjct: 59 TVESRVAALLAARDRGELPGAAVLLRFWNDEDLW-RFYPELQPLSSAAYGTLLTRLSREL 117 Query: 114 LER 116 R Sbjct: 118 RAR 120 >UniRef50_A8V2S1 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V2S1_9AQUI Length = 128 Score = 47.5 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMR----- 55 M E++ LR +T +E A + + +WENGK + +E L +R Sbjct: 1 MTGKEIRELRKKLGLTQEEFAQLLG--VGFTTVNRWENGKSEPRGQALEALEKLRTLIEE 58 Query: 56 -QQRKKHLHAIIEKINNRIGNNTM 78 ++ K +++I I + + Sbjct: 59 AEEGKDFTIEDLKEILKDIESGRL 82 >UniRef50_C7R279 Putative uncharacterized protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R279_JONDD Length = 135 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 7/118 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGD-SESWRQWENGKCAIPDRVVEQLLAMRQQRK 59 MN ALR + A+ + S +W P V LL M + Sbjct: 1 MNPATFNALRSAIGLEQQTIASALGLGAHGKRSVERWCATITP-PAHAVTYLLEMVDRYD 59 Query: 60 KHLHAIIEKINNRIGNN---TMRFFPDLTAFQRVYPDGNFIDWKIYQSVA--AELYAH 112 K L +E+I+ + F + +F + + W +Y S A LYAH Sbjct: 60 KFLEGEMEQIDLAADTGRAIDLIVFKNEASFLTATDGKSGLPWSMYSSAIQQAALYAH 117 >UniRef50_A5EUG4 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5EUG4_BRASB Length = 141 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 16/104 (15%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 MN EL+ R + T ++ A + + WE +P V + ++ K+ Sbjct: 1 MNGLELKKWRKLLNYTQEQAANEFG--VTRPTIQNWEYEITPVPVAVDLASRQLLRRWKQ 58 Query: 61 --------------HLHAIIEKINNRIGNNTMRFFPDLTAFQRV 90 L ++++ R+ + AF RV Sbjct: 59 RPGFGPVTLVYASAPLSPTQDRVDRLPTLFCRRYLDNNAAFLRV 102 >UniRef50_B8FIU9 Putative uncharacterized protein n=3 Tax=Deltaproteobacteria RepID=B8FIU9_DESAA Length = 138 Score = 45.2 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 M+ + LR T A + + + +E G IP V Q+ + +++K Sbjct: 1 MDNEQFILLRKALKKTQTALADLLGVSVKA--VHSYEQGWRKIPAHVERQMYFLISRKEK 58 Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHD 113 + R P + W I+ + +HD Sbjct: 59 KGRKKACWAVSNCPPKVKRSCP------AWEFQSGDMCWMIHGTQCQGHSSHD 105 >UniRef50_A7BW93 Transcriptional regulator, XRE family n=1 Tax=Beggiatoa sp. PS RepID=A7BW93_9GAMM Length = 139 Score = 44.8 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 + A E++ +R ++ E A D ++ ++E G+ IP R + LL + + Sbjct: 69 LTASEIRKVRQKLKLSQFEAAEICGN--DPNTFSRYERGEE-IPQRSISNLLMILNNHPE 125 Query: 61 HLHAIIEK 68 L +I K Sbjct: 126 LLLELIPK 133 >UniRef50_A0YQ49 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YQ49_9CYAN Length = 84 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 7/70 (10%) Query: 6 LQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAI 65 L+ LR M+ +E A + S + +WE G +P + Q+ A+ + L + Sbjct: 16 LKKLRDELGMSQEELARQLG--ISSRTVSRWEAGD-NVPTFTIPQIKALA----RLLESK 68 Query: 66 IEKINNRIGN 75 + I + + Sbjct: 69 GKTIEDLPDH 78 >UniRef50_Q12J40 Transciptional regulator n=9 Tax=Shewanella RepID=Q12J40_SHEDO Length = 76 Score = 44.0 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 6 LQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPD-RVVEQLLAMRQQRKKHLHA 64 L+ R I + DE A ++++WENG C +P ++ L + + Sbjct: 13 LKTGRAIKGFSQDEVAAVYG--VSRRTYQRWENGDCNVPSNHLLSILDDVFHLSIDQIAE 70 Query: 65 IIEKI 69 + +++ Sbjct: 71 VTDEV 75 >UniRef50_A3K1Y6 Putative uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K1Y6_9RHOB Length = 150 Score = 44.0 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 3 AYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHL 62 Y L+ LR ++ E A + + W ++ENG+ AI D L+ L Sbjct: 71 GYRLRLLREALGLSPSEMADMLG--IERTYWSRFENGRRAINDTTAALLVTTFGVTLDFL 128 >UniRef50_A4TV76 Putative uncharacterized protein n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TV76_9PROT Length = 189 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 1 MNA--YELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQR 58 MN +L+ LR + A I D + +WENG +++ + ++ Sbjct: 1 MNHWQTQLRVLRRYHGLKQAVLAEMIG--VDQATVSRWENGHQEPDLAGKKRMRDLLRKF 58 Query: 59 KKHLHAIIEKINNRI 73 L I + + Sbjct: 59 SARLEVDISTLMSSP 73 >UniRef50_D2PN89 Transcriptional regulator, XRE family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PN89_9ACTO Length = 371 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 2 NAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKH 61 + Y L+ +R T E A + D + + WE+G+ + + L+ QR Sbjct: 23 SGYLLKLIRGSLGCTQVELAERLG--VDDNTVQGWESGRRPL-SALRAVDLSRLSQRLTL 79 Query: 62 LHA 64 L A Sbjct: 80 LGA 82 >UniRef50_Q6LSJ2 Putative uncharacterized protein LP_2003 n=1 Tax=Photobacterium profundum RepID=Q6LSJ2_PHOPR Length = 401 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 7/95 (7%) Query: 4 YELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLH 63 L R +T AT + + WENGK +L A+ + +H Sbjct: 11 NRLTQARESLGLTKVALATLV--NVSGATVTNWENGKQNPQGD---KLQALSIALGQPVH 65 Query: 64 AIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFID 98 + ++ N++ FF LTA + + I Sbjct: 66 WFLRELAA--ENSSPYFFRSLTAATKSGREATKIK 98 >UniRef50_A6N226 Putative uncharacterized protein n=1 Tax=Microbacterium phage Min1 RepID=A6N226_9CAUD Length = 111 Score = 42.9 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQ 57 M E+ A RH+ ++ E A + + + + WE+G+ V+ L+A+R++ Sbjct: 6 MTGAEIAATRHLLGLSQAELAADLG--VNRHAVKDWESGRFTARPGVISDLVALRER 60 >UniRef50_A0LH57 Transcriptional regulator, XRE family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH57_SYNFM Length = 167 Score = 42.5 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 22/91 (24%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENG------------------KCA 42 ++ E++ R M I E + + D + +WENG + Sbjct: 78 LSGAEIRFFRKNLGMKIKEFSQLLG--VDRVTVSRWENGHEKPSKSADRLIRLTYAVEAK 135 Query: 43 IPDRVVEQLLAMRQQRKKHLHAIIEKINNRI 73 +P+ V+EQL R RK + + + + Sbjct: 136 VPEAVMEQLR--RSLRKDIVDSEADCFVSLP 164 >UniRef50_P11408 Modification methylase MspI n=3 Tax=Proteobacteria RepID=MTM1_MORSP Length = 418 Score = 41.7 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGK 40 M L+ +R +T + + I ++W+QWE+GK Sbjct: 1 MKPEILKLIRSKLDLTQKQASEII--EVSDKTWQQWESGK 38 >UniRef50_Q856L8 Gp76 n=1 Tax=Mycobacterium phage Corndog RepID=Q856L8_9CAUD Length = 135 Score = 41.3 bits (95), Expect = 0.008, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 8/110 (7%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCA-IPDRVVEQLLAMRQQRK 59 M EL+ +T A + S + +W +P + ++ + Q + Sbjct: 5 MTGAELKVQLTGLGLTPVWLAERLG--VASRTIIRW--FDLPEVPAKAAAEIDRITQITE 60 Query: 60 KHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAEL 109 + +H ++ + +R R +P+ W ++++ + Sbjct: 61 EEMHRLVTNAEHGPLGAVIRTERTDHQAVR-FPNTLPATW--HRALTYRV 107 >UniRef50_D2LEA3 Transcriptional regulator, XRE family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEA3_RHOVA Length = 127 Score = 41.3 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%) Query: 2 NAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKH 61 ++ LR ++ E A+ D + R WE G+ PD+ L+ + Sbjct: 53 FGVRVRQLRDTLGLSQAEFASRYGL--DLSTLRGWEQGRRT-PDKANRTLIEAIEVSPGL 109 Query: 62 LHAIIEKINNRIG 74 + II K R Sbjct: 110 MANIIAKTQARSE 122 >UniRef50_A7B1I5 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1I5_RUMGN Length = 120 Score = 41.3 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 4 YELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLH 63 + LR +T I ++ ++ENG IP ++ L + ++ Sbjct: 10 NRIAELRKKLGLTQTRLGEEIG--VSQQTISKYENGDENIPGDMLLALSKFFRVPIDYIL 67 Query: 64 AIIEKINNRIGN---NTMRFFPDLTAFQRV 90 E+ R N M + D+ + R Sbjct: 68 RKEEEQQQREQNDRKEIMELYRDMDQYNRD 97 >UniRef50_D0ZEQ0 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEQ0_EDWTE Length = 69 Score = 40.5 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 29/53 (54%) Query: 61 HLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIYQSVAAELYAHD 113 L ++++ + ++++F+ A+ D + + W++ QSVAA L+A D Sbjct: 1 MLSHQRQEMSKAVAPHSIQFYRTRDAYTSSTGDQSAVMWRLSQSVAAALFAED 53 >UniRef50_C2EQ71 Transcriptional regulator n=2 Tax=Lactobacillus RepID=C2EQ71_9LACO Length = 286 Score = 40.5 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 3 AYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHL 62 + + +R +++ E A + + +WE G+ +P + E+LL + Sbjct: 13 GPKFKEIRKEAHISLKELAKKVGI-VSPSTLSRWERGEEGLPVEIFEKLLTTMNISYNEI 71 Query: 63 HAIIEKIN 70 I ++ Sbjct: 72 --IANEVE 77 >UniRef50_Q8UI35 Transcriptional regulator n=2 Tax=Rhizobium/Agrobacterium group RepID=Q8UI35_AGRT5 Length = 152 Score = 39.8 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKK 60 ++ EL+ LR +T E + + + D +S +WE G+ I + + ++ Sbjct: 56 ISGDELRFLRTEMGLTQSELSGLVHR--DKQSIGRWERGEVEIDSPSETLIRRLAIEKLG 113 Query: 61 HLHAIIEKINNR 72 IE+++ R Sbjct: 114 LQEVAIEELSKR 125 >UniRef50_A8ZVA3 Putative uncharacterized protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVA3_DESOH Length = 153 Score = 39.8 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMR 55 M E ALR F T + + + ++ +E G +IPD V +QLL + Sbjct: 16 MTGPEFTALRKRFDKTQKQMSQLLG--VSIKAVHSYEQGWRSIPDHVEKQLLLLS 68 >UniRef50_C8N6E2 XRE family transcriptional regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N6E2_9GAMM Length = 179 Score = 39.8 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 9/70 (12%) Query: 6 LQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAI 65 L+ R + +T E A + ++++WE+G ++P +L + L Sbjct: 12 LKKYRLLARLTQTEVAEAVG--VSQPTYQRWESGTNSVPKTKAAKLAKI-------LGIT 62 Query: 66 IEKINNRIGN 75 ++ + Sbjct: 63 QRQVEGQPEP 72 >UniRef50_B3SZW6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZW6_9ZZZZ Length = 58 Score = 39.4 bits (90), Expect = 0.040, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIP 44 M A E + R +++ + +W+QWE+G +P Sbjct: 1 MTAEEFRDSRRALGLSMAAASRRC--KVPYRTWQQWEDGTNRVP 42 >UniRef50_B1Z950 Putative uncharacterized protein n=1 Tax=Methylobacterium populi BJ001 RepID=B1Z950_METPB Length = 127 Score = 39.0 bits (89), Expect = 0.048, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 7 QALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQRKKHLHAII 66 +A+R F +T A WI + R WE G+ + PD L+ M + + + Sbjct: 54 RAVREQFGLTQAAFAAWIG--VPLATLRNWEQGRTS-PDPSARALMRMMAREPEAARRAL 110 Query: 67 EKI 69 + Sbjct: 111 GSV 113 >UniRef50_C5V530 Helix-hairpin-helix DNA-binding motif-containing protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V530_9PROT Length = 152 Score = 38.2 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 1 MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIPDRVVEQLLAMRQQ 57 +N + LR +MT E A A + + + WE G IP L +R Sbjct: 11 INPQDFADLRKQASMTRKEAAQ--ALDVTARTIQNWETGGARIPWMAYRMLRILRGY 65 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.124 0.316 Lambda K H 0.267 0.0376 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 436,825,614 Number of Sequences: 3077464 Number of extensions: 8142512 Number of successful extensions: 58659 Number of sequences better than 1.0e-01: 46 Number of HSP's better than 0.1 without gapping: 29 Number of HSP's successfully gapped in prelim test: 49 Number of HSP's that attempted gapping in prelim test: 58570 Number of HSP's gapped (non-prelim): 79 length of query: 118 length of database: 1,040,396,356 effective HSP length: 85 effective length of query: 33 effective length of database: 778,811,916 effective search space: 25700793228 effective search space used: 25700793228 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.7 bits) S2: 87 (38.2 bits)