28 c3n6uA_ Probab=99.62   E-value=3.9e-15  Score=105.23  Aligned_columns=198  Identities=14%

Q ss_pred             CCCCCCCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf             22100123200122210000000000001233332345200222101586111121465544322211114431011001
Q batch____        92 GQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCV  171 (310)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  171 (310)
                      |.+++++.......++...+..+...+|.+.+.+....+......+..+..|+++...+..................++.
T Consensus         1 G~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~   80 (205)
T c3n6uA_           1 GHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEAQPLYVSDVVIV   80 (205)
T ss_dssp             CEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHTTSCSEEEEEECGGGSCTTEEEEEEEECCEEEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEEEE
T ss_conf             96999950667987899999999997899789999879589999987168738999446878740278741555216764


Q ss_pred             CCCCHHHHHCCCCCCHHHHCCCCEEEECCCCCHHHHHHHH-----HCCCCCEEEECCHHHHHHHHHHCCEEEEEEHHHHH
Q ss_conf             5764044410688886697089889956986037999851-----03788379988999999999858949920099988
Q batch____       172 VASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITW-----LLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAK  246 (310)
Q Consensus       172 ~~~~~~l~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~~~  246 (310)
                      ....++.   .......++...+++...............     ..........++...+..++..|.|++++|...+.
T Consensus        81 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (205)
T c3n6uA_          81 GQRQHPM---ANATRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHSDLLTTMPRTLYE  157 (205)
T ss_dssp             EETTCTT---TTCCSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTSSCBEEEEHHHHH
T ss_pred             ECCCCCC---CCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCH
T ss_conf             0233334---5643210010131289716986314678888663001222222220156665665279736653100341


Q ss_pred             HHHHCCCEEEECCCCCCCCEEEEEEECCC-CCCHHHHHHHHHHHHHH
Q ss_conf             86307988998287876533699994688-89889999999999860
Q batch____       247 PWLNEGKWVALELENPFPDSACCLTWQQN-DMSPALTWLLEYLGDSE  292 (310)
Q Consensus       247 ~~~~~~~L~~i~~~~~~~~~~~~l~~~~~-~~~~~~~~f~~~l~~~~  292 (310)
                      .....+.|+.++++++.+...++++|+++ ..+|++++|+++|++++
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~~~~lv~~~~~~~s~~~~~fi~~l~~~A  204 (205)
T c3n6uA_         158 RNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHA  204 (205)
T ss_dssp             SSTTGGGEEECCCCSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHT
T ss_pred             HHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             24223978998477887305699996387998889999999999735