BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (30 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24244 Uncharacterized protein yccB n=12 Tax=Enterobact...    59   4e-08
UniRef50_C0Q340 Putative periplasmic protein n=7 Tax=cellular or...    51   1e-05

>UniRef50_P24244 Uncharacterized protein yccB n=12 Tax=Enterobacteriaceae
          RepID=YCCB_ECOLI
          Length = 30

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1  MWYLLWFVGILLMCSLSTLVLVWLDPRLKS 30
          MWYLLWFVGILLMCSLSTLVLVWLDPRLKS
Sbjct: 1  MWYLLWFVGILLMCSLSTLVLVWLDPRLKS 30


>UniRef50_C0Q340 Putative periplasmic protein n=7 Tax=cellular organisms
          RepID=C0Q340_SALPC
          Length = 29

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/29 (86%), Positives = 27/29 (93%)

Query: 1  MWYLLWFVGILLMCSLSTLVLVWLDPRLK 29
          MWYLLWFVGILLMCSLSTLVLVWL+ R +
Sbjct: 1  MWYLLWFVGILLMCSLSTLVLVWLESRQQ 29


Searching..................................................done



 ***** No hits found ******

  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.337    0.154    0.580 

Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,780,895
Number of Sequences: 3077464
Number of extensions: 2494394
Number of successful extensions: 18840
Number of sequences better than 1.0e-01: 3
Number of HSP's better than  0.1 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18835
Number of HSP's gapped (non-prelim): 5
length of query: 30
length of database: 1,040,396,356
effective HSP length: 5
effective length of query: 25
effective length of database: 1,025,009,036
effective search space: 25625225900
effective search space used: 25625225900
T: 11
A: 40
X1: 16 ( 7.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 87 (38.0 bits)