Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP30130
DateThu Jan 5 11:45:50 GMT 2012
Unique Job IDba69b6e503c1c479

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3rfzB_
Top template information
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
Confidence and coverage
Confidence:100.0% Coverage: 88%
776 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSYLNLRLYQRNTQCLHIRKHRLAGFFVRLVVACAFAAQAPLSSADLYFNPRFLADDPQA
Secondary structure 
SS confidence 
Disorder  ??
???
???????????
?
????
?
??????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLN
Secondary structure 
SS confidence 
Disorder  ???
?
?????
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  TASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDP
Secondary structure 
SS confidence 
Disorder 
???????
?
?????????
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  GINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSK
Secondary structure 
SS confidence 
Disorder 
?????????
???????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  NKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPV
Secondary structure 
SS confidence 
Disorder  ??
?
?
?????
?????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  IHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTV
Secondary structure 
SS confidence 
Disorder 
?
??????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PYSSVPLLQREGHTRYSITAGEYRSGNAQQEKTRFFQSTLLHGLPAGWTIYGGTQLADRY
Secondary structure 
SS confidence 
Disorder 
??????????
??????
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  RAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYR
Secondary structure 
SS confidence 
Disorder 
?
?
???????????
????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  YSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT
Secondary structure 
SS confidence 
Disorder 
?
????????????????????????????????
???
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  STLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNI
Secondary structure 
SS confidence 
Disorder 
?
?
??????
???????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  PFSHWLRSDSKSQWRHASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGD
Secondary structure 
SS confidence 
Disorder 
??????????????
??????
?
????
???????
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  GNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVL
Secondary structure 
SS confidence 
Disorder  ?????
?????
???
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  VKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVP
Secondary structure 
SS confidence 
Disorder 
????
??????
?
???
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  TRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLA
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........850.........860.........870........
Sequence  GKVQVKWGEEENAHCVANYQLPPESQQQLLTQLSAECR
Secondary structure 
SS confidence 
Disorder  ?
??
?????
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3rfz chain B

3D model

Region: 72 - 878
Aligned: 776
Modelled: 787
Confidence: 100.0%
Identity: 99%
PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate

Phyre2

PDB 3ohn chain A

3D model

Region: 184 - 701
Aligned: 468
Modelled: 488
Confidence: 100.0%
Identity: 100%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain

Phyre2

PDB 2vqi chain A

3D model

Region: 185 - 705
Aligned: 472
Modelled: 487
Confidence: 100.0%
Identity: 28%
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore

Phyre2

PDB 3bwu chain D domain 1

3D model

Region: 47 - 167
Aligned: 121
Modelled: 121
Confidence: 100.0%
Identity: 100%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdv chain A domain 1

3D model

Region: 70 - 184
Aligned: 115
Modelled: 115
Confidence: 100.0%
Identity: 100%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 1zdx chain A domain 1

3D model

Region: 70 - 170
Aligned: 101
Modelled: 101
Confidence: 99.9%
Identity: 100%
Fold: FimD N-terminal domain-like
Superfamily: FimD N-terminal domain-like
Family: Usher N-domain

Phyre2

PDB 3fcg chain B

3D model

Region: 291 - 366
Aligned: 70
Modelled: 76
Confidence: 99.9%
Identity: 46%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher

Phyre2

PDB 2xet chain B

3D model

Region: 797 - 877
Aligned: 81
Modelled: 81
Confidence: 99.8%
Identity: 43%
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly

Phyre2

PDB 3l48 chain B

3D model

Region: 795 - 878
Aligned: 78
Modelled: 84
Confidence: 99.6%
Identity: 38%
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher

Phyre2

PDB 3pe9 chain B

3D model

Region: 300 - 366
Aligned: 64
Modelled: 67
Confidence: 94.1%
Identity: 16%
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3pdg chain A

3D model

Region: 300 - 369
Aligned: 68
Modelled: 70
Confidence: 93.2%
Identity: 19%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1w0n chain A

3D model

Region: 275 - 354
Aligned: 80
Modelled: 80
Confidence: 89.3%
Identity: 20%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 36 carbohydrate binding module, CBM36

Phyre2

PDB 3pe9 chain D

3D model

Region: 300 - 366
Aligned: 64
Modelled: 67
Confidence: 86.3%
Identity: 14%
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3pe9 chain C

3D model

Region: 309 - 355
Aligned: 44
Modelled: 47
Confidence: 83.0%
Identity: 16%
PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 3pe9 chain A

3D model

Region: 309 - 355
Aligned: 44
Modelled: 44
Confidence: 83.0%
Identity: 16%
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules

Phyre2

PDB 1uwy chain A

3D model

Region: 798 - 876
Aligned: 76
Modelled: 79
Confidence: 78.0%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m

Phyre2

PDB 2boi chain A

3D model

Region: 290 - 396
Aligned: 99
Modelled: 107
Confidence: 74.9%
Identity: 17%
PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside

Phyre2

PDB 1ug9 chain A

3D model

Region: 300 - 406
Aligned: 89
Modelled: 107
Confidence: 67.5%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42

Phyre2

PDB 2vnv chain C

3D model

Region: 290 - 403
Aligned: 110
Modelled: 114
Confidence: 65.5%
Identity: 9%
PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution

Phyre2

PDB 1uwy chain A domain 1

3D model

Region: 798 - 876
Aligned: 78
Modelled: 79
Confidence: 62.5%
Identity: 12%
Fold: Prealbumin-like
Superfamily: Carboxypeptidase regulatory domain-like
Family: Carboxypeptidase regulatory domain

Phyre2
1
c3rfzB_
2
c3ohnA_
3
c2vqiA_
4
d3bwud1
5
d1zdva1
6
d1zdxa1
7
c3fcgB_
8
c2xetB_
9
c3l48B_
10
c3pe9B_
11
c3pdgA_
12
d1w0na_
13
c3pe9D_
14
c3pe9C_
15
c3pe9A_
16
c1uwyA_
17
c2boiA_
18
c1ug9A_
19
c2vnvC_
20
d1uwya1
21
22
23
24
25
26
27
28
29
30
31
32
33
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36
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3rfzB_
100.0 99 PDB header:cell adhesion/transport/chaperone
Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis;
PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate
2c3ohnA_
100.0 100 PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
3c2vqiA_
100.0 28 PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
4d3bwud1
100.0 100 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
5d1zdva1
100.0 100 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
6d1zdxa1
99.9 100 Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
7c3fcgB_
99.9 46 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: crystal structure analysis of the middle domain of the2 caf1a usher
8c2xetB_
99.8 43 PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
9c3l48B_
99.6 38 PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
10c3pe9B_
94.1 16 PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
11c3pdgA_
93.2 19 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
12d1w0na_
89.3 20 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 36 carbohydrate binding module, CBM36
13c3pe9D_
86.3 14 PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
14c3pe9C_
83.0 16 PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
15c3pe9A_
83.0 16 PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
16c1uwyA_
78.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase m;
PDBTitle: crystal structure of human carboxypeptidase m
17c2boiA_
74.9 17 PDB header:lectin
Chain: A: PDB Molecule:cv-iil lectin;
PDBTitle: 1.1a structure of chromobacterium violaceum lectin cv2l in2 complex with alpha-methyl-fucoside
18c1ug9A_
67.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
19c2vnvC_
65.5 9 PDB header:sugar-binding protein
Chain: C: PDB Molecule:bcla;
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
20d1uwya1
62.5 12 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
21c3c12A_
not modelled 61.1 17 PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
22c3bryB_
not modelled 59.3 17 PDB header:transport protein
Chain: B: PDB Molecule:tbux;
PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
23c2xr4A_
not modelled 58.1 12 PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
24d1uzva_
not modelled 57.0 14 Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
25c2r32A_
not modelled 54.1 27 PDB header:immune system
Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand
PDBTitle: crystal structure of human gitrl variant
26c1u00A_
not modelled 54.0 18 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein hsca;
PDBTitle: hsca substrate binding domain complexed with the iscu2 recognition peptide elppvkihc
27d1h8la1
not modelled 53.2 6 Fold:Prealbumin-like
Superfamily:Carboxypeptidase regulatory domain-like
Family:Carboxypeptidase regulatory domain
28c1d2pA_
not modelled 52.3 13 PDB header:structural protein
Chain: A: PDB Molecule:collagen adhesin;
PDBTitle: crystal structure of two b repeat units (b1b2) of the2 collagen binding protein (cna) of staphylococcus aureus
29c2nsmA_
not modelled 50.6 10 PDB header:hydrolase
Chain: A: PDB Molecule:carboxypeptidase n catalytic chain;
PDBTitle: crystal structure of the human carboxypeptidase n (kininase i)2 catalytic domain
30c2op6A_
not modelled 49.2 15 PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
31c3fn9B_
not modelled 49.0 11 PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
32c1bprA_
not modelled 48.6 18 PDB header:molecular chaperone
Chain: A: PDB Molecule:dnak;
PDBTitle: nmr structure of the substrate binding domain of dnak,2 minimized average structure
33d1nkga1
not modelled 47.9 13 Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Rhamnogalacturonase B, RhgB, middle domain
34c2bpbA_
not modelled 47.7 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit a;
PDBTitle: sulfite dehydrogenase from starkeya novella
35c3n8eA_
not modelled 45.5 18 PDB header:chaperone
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: substrate binding domain of the human heat shock 70kda protein 92 (mortalin)
36c3dpqE_
not modelled 44.9 18 PDB header:chaperone, peptide binding protein
Chain: E: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the substrate binding domain of e.2 coli dnak in complex with a long pyrrhocoricin-derived3 inhibitor peptide (form b)
37d2vzsa4
not modelled 43.5 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
38c1h8lA_
not modelled 39.5 6 PDB header:carboxypeptidase
Chain: A: PDB Molecule:carboxypeptidase gp180 residues 503-882;
PDBTitle: duck carboxypeptidase d domain ii in complex with gemsa
39c2x5pA_
not modelled 37.9 18 PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
40c3b9eA_
not modelled 37.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of inactive mutant e315m chitinase a from2 vibrio harveyi
41d1v8ha1
not modelled 37.1 21 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:SoxZ-like
42d1yq2a3
not modelled 36.5 21 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
43c3cmgA_
not modelled 34.8 9 PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
44d1u00a2
not modelled 32.0 17 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
45c3brzA_
not modelled 31.5 14 PDB header:transport protein
Chain: A: PDB Molecule:todx;
PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
46d1yuwa1
not modelled 29.8 16 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
47d1edqa1
not modelled 29.8 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
48c3dqgC_
not modelled 28.7 20 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70 kda protein f;
PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans.
49c2ww8A_
not modelled 27.1 9 PDB header:cell adhesion
Chain: A: PDB Molecule:cell wall surface anchor family protein;
PDBTitle: structure of the pilus adhesin (rrga) from streptococcus2 pneumoniae
50d2a9da1
not modelled 25.8 18 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Molybdenum-containing oxidoreductases-like dimerisation domain
51d1dkza2
not modelled 24.9 18 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain
52d1ci3m2
not modelled 24.9 19 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
53d2chha1
not modelled 24.5 9 Fold:Calcium-mediated lectin
Superfamily:Calcium-mediated lectin
Family:Calcium-mediated lectin
54d2dj4a1
not modelled 23.7 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
55d1aoza2
not modelled 23.2 6 Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
56c2a9dB_
not modelled 23.1 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: crystal structure of recombinant chicken sulfite oxidase with arg at2 residue 161
57d1ulva2
not modelled 22.9 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
58c3rghA_
not modelled 22.5 33 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
59d2bp3a1
not modelled 21.9 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
60c2wanA_
not modelled 21.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
61d1wlha1
not modelled 21.1 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
62d2dmca1
not modelled 20.9 29 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
63d1e2wa2
not modelled 20.4 25 Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
64d2ag4a1
not modelled 20.3 14 Fold:Ganglioside M2 (gm2) activator
Superfamily:Ganglioside M2 (gm2) activator
Family:Ganglioside M2 (gm2) activator
65d2e9ia1
not modelled 20.3 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
66c2oxgE_
not modelled 20.1 23 PDB header:transport protein
Chain: E: PDB Molecule:soxz protein;
PDBTitle: the soxyz complex of paracoccus pantotrophus
67c2vzvB_
not modelled 18.9 13 PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan
68c3pddA_
not modelled 18.7 20 PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
69d2d7oa1
not modelled 16.6 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
70c2e9jA_
not modelled 16.6 13 PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 14th filamin domain from human2 filamin-b
71c2brqB_
not modelled 16.5 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
72d2d7pa1
not modelled 16.1 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
73d2je8a4
not modelled 15.9 11 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:beta-Galactosidase/glucuronidase, N-terminal domain
74d2w0pa1
not modelled 15.4 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
75d1uura3
not modelled 15.3 17 Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
76c3d33B_
not modelled 15.2 14 PDB header:unknown function
Chain: B: PDB Molecule:domain of unknown function with an immunoglobulin-like
PDBTitle: crystal structure of a duf3244 family protein with an immunoglobulin-2 like beta-sandwich fold (bvu_0276) from bacteroides vulgatus atcc3 8482 at 1.70 a resolution
77d2dica1
not modelled 15.1 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
78c2ds4A_
not modelled 14.9 27 PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
79d1qfha1
not modelled 14.8 27 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
80c2jf1A_
not modelled 14.5 33 PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide
81d2di8a1
not modelled 14.5 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
82c2dcjA_
not modelled 14.1 20 PDB header:hydrolase
Chain: A: PDB Molecule:xylanase j;
PDBTitle: a two-domain structure of alkaliphilic xynj from bacillus sp. 41m-1
83d1qfha2
not modelled 14.0 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
84d2di9a1
not modelled 13.9 33 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
85d1v05a_
not modelled 13.5 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
86d2d7ma1
not modelled 13.4 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
87c1w2tE_
not modelled 13.3 18 PDB header:hydrolase
Chain: E: PDB Molecule:beta fructosidase;
PDBTitle: beta-fructosidase from thermotoga maritima in complex with2 raffinose
88c3t2lA_
not modelled 13.1 12 PDB header:cell adhesion
Chain: A: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bf1858) from2 bacteroides fragilis nctc 9343 at 2.33 a resolution
89d2diaa1
not modelled 13.1 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
90d2diba1
not modelled 13.1 13 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
91d2j3sa2
not modelled 12.6 20 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
92c3k1dA_
not modelled 12.3 13 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
93c2brqA_
not modelled 12.3 33 PDB header:structural protein
Chain: A: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
94c3iswB_
not modelled 12.3 33 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
95c2w0pB_
not modelled 12.3 33 PDB header:cell adhesion
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the migfilin peptide
96d2d7na1
not modelled 12.2 26 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
97c2crvA_
not modelled 12.0 19 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of c-terminal domain of mitochondrial2 translational initiationfactor 2
98c3cnkB_
not modelled 11.9 13 PDB header:structural protein
Chain: B: PDB Molecule:filamin-a;
PDBTitle: crystal structure of the dimerization domain of human2 filamin a
99d1y4wa1
not modelled 11.8 13 Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Glycosyl hydrolases family 32 C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0