Phyre 2 alignment of P0AAW9 with c2w3cA_

Return to main results | Retrieve Phyre Job Id

Job Description | P0AAW9
Confidence | 1.42% | Date | Wed Jan 25 15:20:21 GMT 2012
Rank | 66 | Aligned Residues | 29
% Identity | 28% | Template | c2w3cA_
PDB info | PDB header:transport protein | Chain: A: PDB Molecule:general vesicular transport factor p115; | PDBTitle: globular head region of the human general vesicular2 transport factor p115
Resolution | 2.22 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . |  |  | 30 | . |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  | . | . | 40 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |
Query Sequence |  | I | M | V | P | V | V | M | A | I | I | L | G | L | I | Y | G | L | . | . | G | E | . | . | . | . | . | . | . | . | V | F | N | I | F | S | . | G | V | G | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | L | V | Q | G | L | C | A | L | L | L | G | I | S | I | Y | F | N | D | N | S | L | E | S | Y | M | K | E | K | L | K | Q | L | I | E | K | R | I | G | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  | S |  |  | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 535 | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions