18/01/2012 02:07:34 : INFO  : Run start: Wed Jan 18 02:07:32 GMT 2012
18/01/2012 02:07:43 : INFO  : Initialised job
18/01/2012 02:07:45 : INFO  : Renaming log file 'phyre2_20120118_020731.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/phyre_20120118_020731.log'
18/01/2012 02:07:48 : INFO  : Initialised job:
Sequence
>batch____
MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQP
LYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIA
AVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTL
GAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG
FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAIN
PAIRYK

18/01/2012 02:07:50 : INFO  : Checked sequence
18/01/2012 02:07:55 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 02:07:57 : INFO  : PSI-BLAST 3 iterations
18/01/2012 02:10:49 : INFO  : PSI-BLAST 5 iterations
18/01/2012 02:15:03 : INFO  : Finished PSI-BLAST
18/01/2012 02:15:08 : INFO  : Running Buildali to generate a3m file
18/01/2012 03:14:38 : INFO  : Converting to HMM
18/01/2012 03:14:46 : INFO  : Calibrating HMM
18/01/2012 03:15:04 : INFO  : Searching HMM database
18/01/2012 03:20:34 : INFO  : Finished buildali
18/01/2012 03:20:37 : INFO  : Predicting secondary structure
18/01/2012 03:20:49 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 03:20:51 : INFO  : Predicting Disordered regions
18/01/2012 03:20:57 : INFO  : Predicted Disorder (Disopred)
18/01/2012 03:20:59 : INFO  : Running memsat_svm check
18/01/2012 03:24:06 : INFO  : Globular protein
18/01/2012 03:24:08 : INFO  : Predicted Transmembrane (memsat_svm) ID 'b98d8ba084c90439'
18/01/2012 03:24:10 : INFO  : Initialising fold library search
18/01/2012 03:24:15 : INFO  : Initialised search input
18/01/2012 03:24:18 : INFO  : Building Ensemble models
18/01/2012 03:24:23 : INFO  : Building hh.d3dhwa1.model.1.pdb
18/01/2012 03:24:45 : INFO  : Building hh.c2onkC_.model.2.pdb
18/01/2012 03:25:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/hh.c2onkC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/c2onkC_.2.pdb
18/01/2012 03:25:11 : INFO  : Building hh.d2onkc1.model.3.pdb
18/01/2012 03:25:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/hh.d2onkc1.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/d2onkc1.3.pdb
18/01/2012 03:25:36 : INFO  : Building hh.d3d31c1.model.4.pdb
18/01/2012 03:25:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/hh.d3d31c1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/d3d31c1.4.pdb
18/01/2012 03:26:00 : INFO  : Building hh.c3d31D_.model.5.pdb
18/01/2012 03:26:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/hh.c3d31D_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b98d8ba084c90439/c3d31D_.5.pdb
18/01/2012 03:26:25 : INFO  : Building d3dhwa1.1.pdb
18/01/2012 03:26:48 : INFO  : Building c2onkC_.2.pdb
18/01/2012 03:27:09 : INFO  : Building d2onkc1.3.pdb
18/01/2012 03:27:30 : INFO  : Building d3d31c1.4.pdb
18/01/2012 03:27:51 : INFO  : Building c3d31D_.5.pdb
18/01/2012 03:28:14 : INFO  : Building d2r6gf2.6.pdb
18/01/2012 03:28:35 : INFO  : Building c2r6gF_.7.pdb
18/01/2012 03:28:55 : INFO  : Building c3fh6F_.8.pdb
18/01/2012 03:29:16 : INFO  : Building d2r6gg1.9.pdb
18/01/2012 03:29:37 : INFO  : Building c1wz4A_.10.pdb
18/01/2012 03:29:58 : INFO  : Building d1ntca_.11.pdb
18/01/2012 03:30:20 : INFO  : Building c2cw1A_.12.pdb
18/01/2012 03:30:42 : INFO  : Building c2ka2B_.13.pdb
18/01/2012 03:31:04 : INFO  : Building c2ka1A_.14.pdb
18/01/2012 03:31:27 : INFO  : Building c2ka1B_.15.pdb
18/01/2012 03:31:50 : INFO  : Building c2ka2A_.16.pdb
18/01/2012 03:32:13 : INFO  : Building d1umqa_.17.pdb
18/01/2012 03:32:36 : INFO  : Building c1umqA_.18.pdb
18/01/2012 03:32:59 : INFO  : Building c1ciiA_.19.pdb
18/01/2012 03:33:23 : INFO  : Building d1fipa_.20.pdb
18/01/2012 03:35:48 : INFO  : Finished HH model building
18/01/2012 03:35:51 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 03:37:20 : INFO  : html domain output complete ID 'b98d8ba084c90439'
18/01/2012 04:10:53 : INFO  : Run end  : Wed Jan 18 04:10:51 GMT 2012
