BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (120 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P45551 Uncharacterized protein yhfY n=52 Tax=Enterobact...   244   5e-64
UniRef50_Q7N5F7 Similar to unknown protein YhfY of Escherichia c...   127   1e-28
UniRef50_A1JKN9 Putative uncharacterized protein n=5 Tax=Yersini...   124   7e-28
UniRef50_A8GJ09 PRD domain protein n=3 Tax=Enterobacteriaceae Re...   102   5e-21
UniRef50_C4U196 PRD domain protein n=2 Tax=Yersinia RepID=C4U196...    97   2e-19
UniRef50_C6AQX2 S-ribosylhomocysteinase n=4 Tax=Pasteurellaceae ...    63   3e-09
UniRef50_Q0I1W6 Putative uncharacterized protein n=3 Tax=Pasteur...    59   4e-08
UniRef50_B9Y6L8 Putative uncharacterized protein n=1 Tax=Holdema...    58   1e-07
UniRef50_B9CM75 Putative uncharacterized protein n=1 Tax=Atopobi...    55   5e-07
UniRef50_A6D1D8 Putative uncharacterized protein n=1 Tax=Vibrio ...    55   8e-07
UniRef50_UPI0001794F42 hypothetical protein CLOSPO_02901 n=1 Tax...    54   1e-06
UniRef50_D0GNT1 PRD domain-containing protein n=1 Tax=Leptotrich...    54   2e-06
UniRef50_C3WF22 Predicted protein n=1 Tax=Fusobacterium mortifer...    52   4e-06
UniRef50_Q6LNG7 Putative uncharacterized protein PM1058 n=1 Tax=...    52   7e-06
UniRef50_D1ALX8 PRD domain protein n=1 Tax=Sebaldella termitidis...    52   8e-06
UniRef50_Q67S02 Putative transcriptional antiterminator n=1 Tax=...    47   1e-04
UniRef50_UPI0001C35378 PRD domain-containing protein n=1 Tax=Clo...    47   3e-04
UniRef50_P44003 Uncharacterized protein HI0487 n=15 Tax=Haemophi...    42   0.004
UniRef50_C1I3F9 Predicted protein n=1 Tax=Clostridium sp. 7_2_43...    40   0.016
UniRef50_B0K1N4 PRD domain protein n=3 Tax=Thermoanaerobacter Re...    40   0.017
UniRef50_C9A355 Putative uncharacterized protein n=1 Tax=Enteroc...    38   0.077

>UniRef50_P45551 Uncharacterized protein yhfY n=52 Tax=Enterobacteriaceae
           RepID=YHFY_ECOLI
          Length = 120

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE
Sbjct: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV
Sbjct: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120


>UniRef50_Q7N5F7 Similar to unknown protein YhfY of Escherichia coli n=2
           Tax=Enterobacteriaceae RepID=Q7N5F7_PHOLL
          Length = 118

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 86/121 (71%), Gaps = 6/121 (4%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ME RLNLL +  VID+DI  GM+QVV  LE +  +PVR+  G + +THMA+ALMRSRRGE
Sbjct: 1   MENRLNLLYQGNVIDQDIHDGMLQVVAQLENDWEIPVRNALGEIVITHMANALMRSRRGE 60

Query: 61  EIEPLDNELLAELAQS---SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           +I  +DNELL E+ QS   SH QA+   +  LL  F ++++PCEEGYLLANL+ LW A  
Sbjct: 61  QISSMDNELLMEVRQSRIFSHLQAI---NASLLAHFDVQLHPCEEGYLLANLFSLWAAKG 117

Query: 118 E 118
           +
Sbjct: 118 Q 118


>UniRef50_A1JKN9 Putative uncharacterized protein n=5 Tax=Yersinia
           RepID=A1JKN9_YERE8
          Length = 126

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 87/117 (74%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RLN+LC++GVID+DI +G+ QV+N LE    LPV  EQG MA+THMA+ALMR+RRGE
Sbjct: 5   IDARLNILCQSGVIDQDIGQGLDQVINRLEHFWQLPVHGEQGVMAITHMANALMRTRRGE 64

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           EI  L+  +LAE+ QS     + +++Q LL  F+L+    E GYLLANLYGL+++++
Sbjct: 65  EIAALNPAILAEIVQSKEIHYIREINQDLLAYFSLKPAENEIGYLLANLYGLYLSSD 121


>UniRef50_A8GJ09 PRD domain protein n=3 Tax=Enterobacteriaceae RepID=A8GJ09_SERP5
          Length = 122

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 77/118 (65%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRL +L +A VID ++  GM++VV  LE    L +R  QG M +THMA+AL R+RRGE
Sbjct: 1   METRLQILHDAQVIDTEVYIGMLEVVKRLEQHWQLNIRHTQGEMMITHMANALTRARRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            I  +D ELL E+  S+ +  + +++  LL  FA  +   E GYLLAN++GL++A  +
Sbjct: 61  IIAAIDPELLDEIEASNVFANIREINSDLLSLFAFAIPDSELGYLLANVFGLYLAQTD 118


>UniRef50_C4U196 PRD domain protein n=2 Tax=Yersinia RepID=C4U196_YERKR
          Length = 152

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/119 (43%), Positives = 75/119 (63%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRL +L +A VID  +  GM+ V+  LE    L +R  QG M +THMA+ALMR+ +G+
Sbjct: 32  METRLKILYDAQVIDSAVYFGMLNVLTRLEHHWQLSIRHPQGEMLITHMANALMRASQGQ 91

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            I  +D+E+L E+  ++ +  + +++  LL  F  EV   E GYLLANLYGL +A   E
Sbjct: 92  VIPAIDDEILKEIEATAIFANIREINNDLLSLFVFEVPNHELGYLLANLYGLHLAQQTE 150


>UniRef50_C6AQX2 S-ribosylhomocysteinase n=4 Tax=Pasteurellaceae RepID=C6AQX2_AGGAN
          Length = 126

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 56/100 (56%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +ID+ I   ++ V   L+    + V +EQ  M + H+ASAL R +RG    PL  + LAE
Sbjct: 15  LIDEHIVDTVLNVRQHLQRHWQVDVETEQVKMMLVHIASALGRIKRGHRASPLYADFLAE 74

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +  +  +  V+ +HQ +L+   L +   E+ Y LAN+YGL
Sbjct: 75  IQSAVIFPQVLIIHQYVLELMPLSIPEEEQTYFLANVYGL 114


>UniRef50_Q0I1W6 Putative uncharacterized protein n=3 Tax=Pasteurellaceae
           RepID=Q0I1W6_HAES1
          Length = 146

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 64/115 (55%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL  L +  +ID+DI    + + N L  +  + ++++Q  M + H+A AL R +RG 
Sbjct: 25  IQQRLIFLVQRHLIDEDIMTITLNIRNRLGKKWRVNLKTKQVDMLLIHLAMALGRIKRGY 84

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
             + L+ +  +E+ ++  +  +++LHQ LL      +   E+ + +AN+Y L +A
Sbjct: 85  VAKALNPDFFSEIERAVCFTKILKLHQELLTFIPFPIPKEEQSHFIANIYSLSLA 139


>UniRef50_B9Y6L8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y6L8_9FIRM
          Length = 124

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 56/109 (51%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           RLNL  E G+I  D    +  ++ + + + H+ ++ E     + H+ +A  RS  GEE+E
Sbjct: 6   RLNLYLEGGMIQPDDVADVQAIITMFDQKYHIVLQEENADTFIAHLCAAFGRSATGEEVE 65

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           PL  E+ AEL     +   +Q+ + ++      +NP E+ Y L ++  L
Sbjct: 66  PLPPEVKAELEGLDSYPQSLQMLKDVMAATRNRLNPTEQDYALLHINNL 114


>UniRef50_B9CM75 Putative uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626
           RepID=B9CM75_9ACTN
          Length = 120

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 62/112 (55%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           R+ +L +AG +D++  + +  VV ++E EC      E   + +TH+A+AL R+   EEI 
Sbjct: 7   RIEILKQAGFVDENDAESLKNVVALIEHECGPAESDEHIGIIITHIAAALKRNVEEEEIA 66

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
           P++ + L E+  S  +    ++   +   FA  ++  E G++L ++ GL +A
Sbjct: 67  PINQQALEEVYASPVFPKANRIANDISDMFAERLSKDEFGFVLVHIAGLLVA 118


>UniRef50_A6D1D8 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D1D8_9VIBR
          Length = 119

 Score = 55.1 bits (131), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           M+ R++LL E  VI +      M+ V +L  E ++   SEQ  MAMTH A A+ R  +  
Sbjct: 1   MKQRMSLLLEHNVISQIAFDATMRAVGILMIEWNVKEDSEQFQMAMTHFARAIDRVLQSN 60

Query: 61  EI-EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNP-CEEGYLLANLYGLWMAAN 117
            I E LD+E+L E+     +  +V ++  L     +   P  E  +LL+NLY + ++ +
Sbjct: 61  PIVEGLDSEILKEMQDDDVFSDIVSMNNQLCSASGVPEMPETEISFLLSNLYAIKLSVS 119


>UniRef50_UPI0001794F42 hypothetical protein CLOSPO_02901 n=1 Tax=Clostridium sporogenes
           ATCC 15579 RepID=UPI0001794F42
          Length = 117

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 57/109 (52%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           RL LL +   ID+D    +++++   + +  + +  E G M +TH+A AL R ++ E +E
Sbjct: 6   RLKLLKDGAQIDEDTYNNLLKIIKSFKKDFQIELSEENGGMFITHLAVALERIKKKELVE 65

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           P++  +  E+    +++    + + L K+  + V   E  ++L ++  L
Sbjct: 66  PIEELIFEEVRNDKNFKKANDILESLEKDINISVPEVERPFILMHIVTL 114


>UniRef50_D0GNT1 PRD domain-containing protein n=1 Tax=Leptotrichia goodfellowii
           F0264 RepID=D0GNT1_9FUSO
          Length = 120

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL++L  + VID++I   ++ ++  L+ +  + +  E G M +TH++ AL R ++ E
Sbjct: 4   LKFRLDILKNSEVIDEEIYNKVISLIEHLDKKWEITLTEENGAMFITHLSMALKRIKQNE 63

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE-GYLLANL 109
            +  +D  +  E+  S     + ++++ + K   +E  P EE  Y+L NL
Sbjct: 64  NVNNIDKTVFEEVMVSDKLDKIEEIYEDIEKNIFIEKLPEEEKKYILVNL 113


>UniRef50_C3WF22 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817
           RepID=C3WF22_FUSMR
          Length = 120

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 59/109 (54%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++TRL +LC  G I  +  + M+ V+ + + +  + +  E G M  TH++ A+ R +  E
Sbjct: 3   LQTRLEILCSTGTISNETREVMLNVIKMFQEKHQITLTEENGAMMTTHLSMAITRVKNNE 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            ++ ++ E+  E+ +S   +   ++++ L     +++   E+ Y+L N+
Sbjct: 63  PVKVINEEVYQEILESEFLEKAQEIYKDLESVLDVKLPEDEKKYMLVNI 111


>UniRef50_Q6LNG7 Putative uncharacterized protein PM1058 n=1 Tax=Photobacterium
           profundum RepID=Q6LNG7_PHOPR
          Length = 106

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 2/98 (2%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLAELAQSSH 78
            G ++ V++L +E  L   +EQ  MAMTH+A A  R    + I + LD ++LAE+     
Sbjct: 8   DGTVKAVDLLVSEWQLDTSTEQLQMAMTHLARATDRILSDQPITQGLDEDILAEIISDDD 67

Query: 79  WQAVVQLHQVLLKEFALEVNP-CEEGYLLANLYGLWMA 115
           +  +   ++ +L  F +E  P  E  + L+NL+ L+ A
Sbjct: 68  FPVIQATNRQILGGFGIEQAPDAENTFFLSNLFSLYCA 105


>UniRef50_D1ALX8 PRD domain protein n=1 Tax=Sebaldella termitidis ATCC 33386
           RepID=D1ALX8_SEBTE
          Length = 116

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 64/109 (58%), Gaps = 1/109 (0%)

Query: 1   MET-RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRG 59
           MET RL++L EA +ID++  + + +++N +  E  L + +E G M +TH++ A+MR +  
Sbjct: 1   METERLDILVEAELIDQETYEKVKRIMNEVSEEFTLDLSTESGQMFITHVSMAIMRIKNN 60

Query: 60  EEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLAN 108
           E    ++N +  E+ +S +++  ++  +++      E+   E+ YL+ N
Sbjct: 61  EATTDVENAIFEEIKESENFENALRFAEIIENIIEHEIPKNEKEYLVIN 109


>UniRef50_Q67S02 Putative transcriptional antiterminator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67S02_SYMTH
          Length = 125

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E RL LL E+G I  ++ +    ++  +E    + V  E G M  TH+A AL R R G+
Sbjct: 6   LEMRLRLLQESGQISPEVAELTRWILKRVEERYDMTVTEENGAMFTTHLAVALERLRSGQ 65

Query: 61  EIEPLDNELLAEL-AQSSHWQAVVQLHQVLLKE----FALEVNPCEEGYLLANLYGL 112
            I+ + +E LAE+ A    W  V   ++V+  E        V   E GYL A+L  L
Sbjct: 66  AIDEMVSEGLAEVKAYPEEWAFV---NEVVAGEAGRRLGARVPEAEVGYLTAHLITL 119


>UniRef50_UPI0001C35378 PRD domain-containing protein n=1 Tax=Clostridium hathewayi DSM
           13479 RepID=UPI0001C35378
          Length = 120

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 4   RLNLLCEAGVIDK---DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           RL +L  +GVI +   D CK  ++++   + E       ++  M +TH+A A  R   G+
Sbjct: 10  RLEILLNSGVISQRISDYCKTAVKLLIKQKPEAD----GDRAAMFITHLAMAGQRILEGK 65

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           E +PLD ++L  + Q   +   +     +L +  LE    E+ +L  +L  L+M
Sbjct: 66  EEKPLDGQILESVKQEPAYSKALDFLTYMLNQTDLEFPDTEKDFLTVHLCNLFM 119


>UniRef50_P44003 Uncharacterized protein HI0487 n=15 Tax=Haemophilus influenzae
           RepID=Y487_HAEIN
          Length = 125

 Score = 42.4 bits (98), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I++ I   + ++ + L       V + Q    + H+A +L R  RG  +  L +E+L E+
Sbjct: 16  INQSIIDVIFRLRDRLAHYWQADVNTPQVDFMLLHIACSLGRIERGGCVSSLYSEMLEEM 75

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
             +  +  V+ +HQ LLK     +   E+ Y LAN++ L
Sbjct: 76  QSAVIFPQVLAIHQDLLKLMPFSIPEAEQTYFLANIHSL 114


>UniRef50_C1I3F9 Predicted protein n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I3F9_9CLOT
          Length = 129

 Score = 40.4 bits (93), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 47/86 (54%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           RL++L +AG + K+    ++QV+N  E +  + +  +  +M +TH+ SAL R      + 
Sbjct: 21  RLDILRDAGQLSKENYNKIIQVINYFEEKRGVKLLEDNASMFITHLCSALGRIEENNLVN 80

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVL 89
            LD+ +   L ++ ++   +++ + L
Sbjct: 81  KLDDVVAQSLKENENYDEALKVAKDL 106


>UniRef50_B0K1N4 PRD domain protein n=3 Tax=Thermoanaerobacter RepID=B0K1N4_THEPX
          Length = 124

 Score = 40.4 bits (93), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R++LL +  VID D  K + ++   L     +    E   M +TH+A ++ R +  E++
Sbjct: 7   NRIDLLVQGNVIDFDTGKAIKKIDEELRVNYEICAEDEHYEMFITHLAMSIKRLKEEEKL 66

Query: 63  EP-LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           E  +D+EL  E+    ++   + + Q +     +++   E+ ++L +L  L
Sbjct: 67  ESTIDDELFNEVKNCPNYYRALGILQNIEDRIEIKLPESEKRFVLLHLCNL 117


>UniRef50_C9A355 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum
          EG2 RepID=C9A355_ENTGA
          Length = 117

 Score = 38.1 bits (87), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 4  RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
          +L +L ++G++D++    +  V++ L  E  +    +Q  + +TH+A A MR +  E + 
Sbjct: 5  KLTVLLDSGIVDQETYDYVFNVLSYL-LEKEIVEEEQQADVFLTHLAMADMRRKNNETVN 63

Query: 64 PLDNELLAELAQSSHWQAVVQLHQVLLK 91
           L++ + AE+    H+    +L Q L K
Sbjct: 64 SLESFIQAEIEGDPHYLHSRELWQDLQK 91


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P45551 Uncharacterized protein yhfY n=52 Tax=Enterobact...   147   1e-34
UniRef50_A1JKN9 Putative uncharacterized protein n=5 Tax=Yersini...   142   5e-33
UniRef50_C4U196 PRD domain protein n=2 Tax=Yersinia RepID=C4U196...   137   1e-31
UniRef50_A8GJ09 PRD domain protein n=3 Tax=Enterobacteriaceae Re...   137   2e-31
UniRef50_Q7N5F7 Similar to unknown protein YhfY of Escherichia c...   131   7e-30
UniRef50_Q0I1W6 Putative uncharacterized protein n=3 Tax=Pasteur...   130   1e-29
UniRef50_C6AQX2 S-ribosylhomocysteinase n=4 Tax=Pasteurellaceae ...   114   1e-24
UniRef50_B9Y6L8 Putative uncharacterized protein n=1 Tax=Holdema...   111   9e-24
UniRef50_UPI0001794F42 hypothetical protein CLOSPO_02901 n=1 Tax...   108   4e-23
UniRef50_C3WF22 Predicted protein n=1 Tax=Fusobacterium mortifer...   108   5e-23
UniRef50_B9CM75 Putative uncharacterized protein n=1 Tax=Atopobi...   105   3e-22
UniRef50_A6D1D8 Putative uncharacterized protein n=1 Tax=Vibrio ...   105   6e-22
UniRef50_UPI0001C35378 PRD domain-containing protein n=1 Tax=Clo...   104   8e-22
UniRef50_Q6LNG7 Putative uncharacterized protein PM1058 n=1 Tax=...   103   3e-21
UniRef50_D0GNT1 PRD domain-containing protein n=1 Tax=Leptotrich...   101   8e-21
UniRef50_Q67S02 Putative transcriptional antiterminator n=1 Tax=...   100   2e-20
UniRef50_D1ALX8 PRD domain protein n=1 Tax=Sebaldella termitidis...    90   2e-17

Sequences not found previously or not previously below threshold:

UniRef50_P44003 Uncharacterized protein HI0487 n=15 Tax=Haemophi...    89   3e-17
UniRef50_C1I3F9 Predicted protein n=1 Tax=Clostridium sp. 7_2_43...    85   9e-16
UniRef50_B0K1N4 PRD domain protein n=3 Tax=Thermoanaerobacter Re...    83   2e-15
UniRef50_Q5WK94 Putative uncharacterized protein n=1 Tax=Bacillu...    77   2e-13
UniRef50_C6P8P3 PRD domain protein n=1 Tax=Thermoanaerobacterium...    76   4e-13
UniRef50_C9A355 Putative uncharacterized protein n=1 Tax=Enteroc...    68   7e-11
UniRef50_A6TVY0 Transcriptional antiterminator, BglG n=1 Tax=Alk...    62   7e-09
UniRef50_C1I943 BglG family transcriptional antiterminator n=1 T...    61   1e-08
UniRef50_Q65MQ9 Putative uncharacterized protein n=1 Tax=Bacillu...    61   1e-08
UniRef50_B0K3R4 Transcriptional antiterminator, BglG n=12 Tax=Th...    60   2e-08
UniRef50_A8U9C7 Putative uncharacterized protein n=1 Tax=Carnoba...    60   2e-08
UniRef50_B0A809 Putative uncharacterized protein n=1 Tax=Clostri...    59   3e-08
UniRef50_C9RTD1 PTS modulated transcriptional regulator, MtlR fa...    59   5e-08
UniRef50_Q9KF98 BH0587 protein n=1 Tax=Bacillus halodurans RepID...    58   9e-08
UniRef50_C0Z8I8 Transcriptional regulator n=1 Tax=Brevibacillus ...    57   1e-07
UniRef50_P96574 Putative phosphotransferase enzyme IIA component...    57   2e-07
UniRef50_B1C5P5 Putative uncharacterized protein n=1 Tax=Anaerof...    57   3e-07
UniRef50_C7T9M3 Conserved protein n=2 Tax=Lactobacillus RepID=C7...    56   3e-07
UniRef50_Q5WDU8 BglG family transcriptional antiterminator n=1 T...    56   3e-07
UniRef50_C1PAW0 PTS modulated transcriptional regulator, MtlR fa...    56   4e-07
UniRef50_B0MAI9 Putative uncharacterized protein n=1 Tax=Anaeros...    56   4e-07
UniRef50_B6FZM9 Putative uncharacterized protein n=1 Tax=Clostri...    55   9e-07
UniRef50_C5D9V5 PTS modulated transcriptional regulator, MtlR fa...    54   1e-06
UniRef50_Q9K679 Transcriptional antiterminator n=1 Tax=Bacillus ...    54   1e-06
UniRef50_C1PBK9 PTS modulated transcriptional regulator, MtlR fa...    54   1e-06
UniRef50_B8CZR0 Transcriptional antiterminator, BglG n=1 Tax=Hal...    54   1e-06
UniRef50_C9XLB5 Putative transcription antiterminator n=8 Tax=Cl...    52   4e-06
UniRef50_B6G9P7 Putative uncharacterized protein n=1 Tax=Collins...    52   5e-06
UniRef50_C4V0J7 MtlR transcriptional regulator n=1 Tax=Selenomon...    52   7e-06
UniRef50_B0KCF7 Transcriptional antiterminator, BglG n=8 Tax=The...    51   1e-05
UniRef50_A8FIW8 Transcriptional regulator n=2 Tax=Bacillus pumil...    51   1e-05
UniRef50_B7GJR6 Transcriptional antiterminator of mannitol metab...    50   3e-05
UniRef50_C7TNE9 PTS system, fructose-specific IIA component n=1 ...    50   3e-05
UniRef50_C8NIB7 Putative uncharacterized protein n=1 Tax=Granuli...    49   3e-05
UniRef50_C0D786 Putative uncharacterized protein n=1 Tax=Clostri...    49   4e-05
UniRef50_A7ZA83 LicR n=3 Tax=Bacillus RepID=A7ZA83_BACA2               49   5e-05
UniRef50_Q723N6 PRD/PTS system IIA 2 domain protein n=24 Tax=Lis...    49   5e-05
UniRef50_C9KJT4 Transcriptional antiterminator, BglG family n=1 ...    48   9e-05
UniRef50_Q8EN85 Transcriptional antiterminator (BglG family) n=1...    48   1e-04
UniRef50_B0K247 Transcriptional antiterminator, BglG n=13 Tax=Cl...    48   1e-04
UniRef50_D1WYJ0 Transcriptional antiterminator, BglG n=3 Tax=Str...    47   2e-04
UniRef50_C1QBY4 PTS system IIA component; transcriptional antite...    47   2e-04
UniRef50_Q8EMS7 Transcriptional antiterminator of lichenan opero...    47   3e-04
UniRef50_C6VLU3 Transcription regulator, mannitol operon n=2 Tax...    47   3e-04
UniRef50_Q184K6 Putative transcriptional antiterminator n=6 Tax=...    47   3e-04
UniRef50_UPI0001C42D0A transcriptional antiterminator n=1 Tax=Ba...    46   4e-04
UniRef50_UPI000178876C transcriptional antiterminator, BglG n=1 ...    45   6e-04
UniRef50_A6LX09 Transcriptional antiterminator, BglG n=11 Tax=Cl...    45   7e-04
UniRef50_Q040S8 Beta-glucoside operon antiterminator n=12 Tax=La...    45   7e-04
UniRef50_P46321 Putative phosphotransferase enzyme IIA component...    45   7e-04
UniRef50_Q67SK7 BglG family transcription antiterminator n=1 Tax...    45   0.001
UniRef50_C0D455 Putative uncharacterized protein n=1 Tax=Clostri...    44   0.001
UniRef50_B0MGK7 Putative uncharacterized protein n=2 Tax=Clostri...    44   0.002
UniRef50_Q03GK2 Transcriptional antiterminator n=1 Tax=Pediococc...    44   0.002
UniRef50_A8W0Y8 Transcriptional antiterminator, BglG (Fragment) ...    43   0.002
UniRef50_B6GBJ5 Putative uncharacterized protein n=1 Tax=Collins...    43   0.002
UniRef50_C7REJ5 PTS modulated transcriptional regulator, MtlR fa...    43   0.002
UniRef50_C4G9M5 Putative uncharacterized protein n=1 Tax=Shuttle...    43   0.002
UniRef50_C2H7N3 BglG family transcriptional antiterminator n=12 ...    43   0.002
UniRef50_C7IC29 Transcriptional antiterminator, BglG n=1 Tax=Clo...    43   0.002
UniRef50_C6IY31 Transcriptional antiterminator n=1 Tax=Paenibaci...    43   0.003
UniRef50_A8AYJ7 Transcription antiterminator BglG family n=3 Tax...    42   0.004
UniRef50_C0QXV4 Transcriptional antiterminator , BglB n=1 Tax=Br...    42   0.005
UniRef50_A0AMB6 Complete genome n=18 Tax=Listeria RepID=A0AMB6_L...    42   0.005
UniRef50_A6M2G4 Sigma-54 factor, interaction domain-containing p...    42   0.005
UniRef50_B9Y2S2 Putative uncharacterized protein n=1 Tax=Holdema...    42   0.005
UniRef50_A0Q2H7 SACPA operon antiterminator n=3 Tax=Clostridium ...    42   0.006
UniRef50_A4EAF5 Putative uncharacterized protein n=1 Tax=Collins...    42   0.006
UniRef50_C6PFK2 PTS modulated transcriptional regulator, MtlR fa...    42   0.007
UniRef50_O31644 Putative phosphotransferase enzyme IIA component...    42   0.007
UniRef50_C4FAP7 Putative uncharacterized protein n=1 Tax=Collins...    42   0.007
UniRef50_O07655 Antiterminator homolog n=16 Tax=Enterobacteriace...    42   0.007
UniRef50_Q03E27 Transcriptional regulator with AAA-type ATPase d...    42   0.008
UniRef50_C8WQV6 Transcriptional antiterminator, BglG n=2 Tax=Ali...    42   0.008
UniRef50_B0MGF2 Putative uncharacterized protein n=4 Tax=Clostri...    42   0.008
UniRef50_C6CTN7 Transcriptional antiterminator, BglG n=1 Tax=Pae...    42   0.009
UniRef50_Q184U4 Putative transcription antiterminator n=5 Tax=Cl...    41   0.010
UniRef50_A5KQG9 Putative uncharacterized protein n=1 Tax=Ruminoc...    41   0.010
UniRef50_D1B7A6 PTS modulated transcriptional regulator, MtlR fa...    41   0.010
UniRef50_B4U3Q3 BglG family transcription antiterminator, PTS sy...    41   0.011
UniRef50_C9KQ73 Putative transcription antiterminator GlcT n=1 T...    41   0.012
UniRef50_A8U731 Transcriptional regulator n=1 Tax=Carnobacterium...    41   0.013
UniRef50_D1B6P9 Transcriptional antiterminator, BglG n=1 Tax=The...    41   0.013
UniRef50_B0KCX3 PTS system transcriptional activator n=13 Tax=Cl...    41   0.014
UniRef50_C6DCM5 Transcriptional antiterminator, BglG n=7 Tax=Ent...    41   0.014
UniRef50_A8R9W1 Putative uncharacterized protein n=1 Tax=Eubacte...    41   0.014
UniRef50_C6Q8D8 PTS system transcriptional activator n=1 Tax=The...    41   0.015
UniRef50_B9Y980 Putative uncharacterized protein n=1 Tax=Holdema...    41   0.015
UniRef50_B6FWC4 Putative uncharacterized protein n=2 Tax=Clostri...    41   0.016
UniRef50_C0ZH78 Probable transcriptional antiterminator n=2 Tax=...    41   0.016
UniRef50_C7UQ76 Predicted protein n=3 Tax=Firmicutes RepID=C7UQ7...    40   0.019
UniRef50_B1YKV9 Transcriptional antiterminator, BglG n=2 Tax=Exi...    40   0.019
UniRef50_C3RJ23 Predicted protein n=2 Tax=Bacteria RepID=C3RJ23_...    40   0.021
UniRef50_Q5WKS9 Transcriptional antiterminator of lichenan opero...    40   0.022
UniRef50_C6IXJ3 Phosphoenolpyruvate-dependent sugar phosphotrans...    40   0.023
UniRef50_D2MNU4 PRD domain protein n=1 Tax=Bulleidia extructa W1...    40   0.023
UniRef50_D1ALQ6 Transcriptional antiterminator, BglG n=1 Tax=Seb...    40   0.024
UniRef50_B4F212 Transcriptional antiterminator n=14 Tax=Bacteria...    40   0.024
UniRef50_B9CU63 Transcriptional antiterminator, BglG family/DNA-...    40   0.026
UniRef50_C3RIK3 Predicted protein n=3 Tax=Bacteria RepID=C3RIK3_...    40   0.027
UniRef50_C5WHN0 Transcriptional antiterminator bglG n=1 Tax=Stre...    40   0.028
UniRef50_A6LXA2 Transcriptional antiterminator, BglG n=15 Tax=Fi...    40   0.035
UniRef50_C0D9E2 Putative uncharacterized protein (Fragment) n=1 ...    40   0.035
UniRef50_C0D1K5 Putative uncharacterized protein n=2 Tax=Clostri...    40   0.035
UniRef50_B0K7D9 PTS system transcriptional activator n=12 Tax=Cl...    39   0.036
UniRef50_C7V767 Transcriptional antiterminator n=1 Tax=Enterococ...    39   0.036
UniRef50_D2EKZ6 Transcription antiterminator n=1 Tax=Pediococcus...    39   0.037
UniRef50_C5RLN3 Transcriptional antiterminator, BglG n=1 Tax=Clo...    39   0.041
UniRef50_A8RDI0 Putative uncharacterized protein n=1 Tax=Eubacte...    39   0.042
UniRef50_C8P1A7 SACPA operon antiterminator (SacT) n=1 Tax=Erysi...    39   0.046
UniRef50_B1YFN4 Transcriptional antiterminator, BglG n=1 Tax=Exi...    39   0.048
UniRef50_A2Q6K4 FruR protein n=5 Tax=Actinobacteridae RepID=A2Q6...    39   0.052
UniRef50_A0RA54 Transcription antiterminator, BglG family n=75 T...    39   0.054
UniRef50_A0ALC5 LicT protein n=38 Tax=Firmicutes RepID=A0ALC5_LISW6    39   0.058
UniRef50_P26212 SacPA operon antiterminator n=9 Tax=Bacillus Rep...    39   0.059
UniRef50_B1C8U8 Putative uncharacterized protein n=1 Tax=Anaerof...    39   0.060
UniRef50_D0KIH3 Transcriptional antiterminator, BglG n=13 Tax=Ba...    38   0.061
UniRef50_B6FYA9 Putative uncharacterized protein n=3 Tax=Clostri...    38   0.064
UniRef50_C9ADA7 Transcription antiterminator n=1 Tax=Enterococcu...    38   0.066
UniRef50_A8VWD6 Transcriptional antiterminator, BglG n=1 Tax=Bac...    38   0.066
UniRef50_Q045X5 Beta-glucoside operon antiterminator n=6 Tax=Lac...    38   0.070
UniRef50_Q71VY8 Transcription antiterminator, BglG family n=14 T...    38   0.071
UniRef50_A7GGX3 Transcriptional antiterminator, BglG family n=12...    38   0.073
UniRef50_A6M2B9 Sigma-54 factor, interaction domain-containing p...    38   0.074
UniRef50_P15401 Levansucrase and sucrase synthesis operon antite...    38   0.079
UniRef50_Q0TV06 Transcription antiterminator n=9 Tax=Clostridium...    38   0.080
UniRef50_B5F2K0 Sigma-54 factor, interaction domain-containing p...    38   0.080
UniRef50_A0AGN0 Complete genome n=21 Tax=Firmicutes RepID=A0AGN0...    38   0.085
UniRef50_B3DQG5 Beta-glucoside operon antiterminator n=24 Tax=Ac...    38   0.087
UniRef50_C8P2Y2 Transcription antiterminator LicT n=1 Tax=Erysip...    38   0.092
UniRef50_B6GAF6 Putative uncharacterized protein n=1 Tax=Collins...    38   0.100

>UniRef50_P45551 Uncharacterized protein yhfY n=52 Tax=Enterobacteriaceae
           RepID=YHFY_ECOLI
          Length = 120

 Score =  147 bits (371), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE
Sbjct: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV
Sbjct: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120


>UniRef50_A1JKN9 Putative uncharacterized protein n=5 Tax=Yersinia
           RepID=A1JKN9_YERE8
          Length = 126

 Score =  142 bits (357), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/118 (51%), Positives = 87/118 (73%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RLN+LC++GVID+DI +G+ QV+N LE    LPV  EQG MA+THMA+ALMR+RRGE
Sbjct: 5   IDARLNILCQSGVIDQDIGQGLDQVINRLEHFWQLPVHGEQGVMAITHMANALMRTRRGE 64

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           EI  L+  +LAE+ QS     + +++Q LL  F+L+    E GYLLANLYGL+++++ 
Sbjct: 65  EIAALNPAILAEIVQSKEIHYIREINQDLLAYFSLKPAENEIGYLLANLYGLYLSSDT 122


>UniRef50_C4U196 PRD domain protein n=2 Tax=Yersinia RepID=C4U196_YERKR
          Length = 152

 Score =  137 bits (344), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/119 (43%), Positives = 75/119 (63%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRL +L +A VID  +  GM+ V+  LE    L +R  QG M +THMA+ALMR+ +G+
Sbjct: 32  METRLKILYDAQVIDSAVYFGMLNVLTRLEHHWQLSIRHPQGEMLITHMANALMRASQGQ 91

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            I  +D+E+L E+  ++ +  + +++  LL  F  EV   E GYLLANLYGL +A   E
Sbjct: 92  VIPAIDDEILKEIEATAIFANIREINNDLLSLFVFEVPNHELGYLLANLYGLHLAQQTE 150


>UniRef50_A8GJ09 PRD domain protein n=3 Tax=Enterobacteriaceae RepID=A8GJ09_SERP5
          Length = 122

 Score =  137 bits (344), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/118 (44%), Positives = 77/118 (65%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRL +L +A VID ++  GM++VV  LE    L +R  QG M +THMA+AL R+RRGE
Sbjct: 1   METRLQILHDAQVIDTEVYIGMLEVVKRLEQHWQLNIRHTQGEMMITHMANALTRARRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            I  +D ELL E+  S+ +  + +++  LL  FA  +   E GYLLAN++GL++A  +
Sbjct: 61  IIAAIDPELLDEIEASNVFANIREINSDLLSLFAFAIPDSELGYLLANVFGLYLAQTD 118


>UniRef50_Q7N5F7 Similar to unknown protein YhfY of Escherichia coli n=2
           Tax=Enterobacteriaceae RepID=Q7N5F7_PHOLL
          Length = 118

 Score =  131 bits (329), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/118 (52%), Positives = 84/118 (71%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ME RLNLL +  VID+DI  GM+QVV  LE +  +PVR+  G + +THMA+ALMRSRRGE
Sbjct: 1   MENRLNLLYQGNVIDQDIHDGMLQVVAQLENDWEIPVRNALGEIVITHMANALMRSRRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +I  +DNELL E+ QS  +  +  ++  LL  F ++++PCEEGYLLANL+ LW A  +
Sbjct: 61  QISSMDNELLMEVRQSRIFSHLQAINASLLAHFDVQLHPCEEGYLLANLFSLWAAKGQ 118


>UniRef50_Q0I1W6 Putative uncharacterized protein n=3 Tax=Pasteurellaceae
           RepID=Q0I1W6_HAES1
          Length = 146

 Score =  130 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 64/116 (55%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL  L +  +ID+DI    + + N L  +  + ++++Q  M + H+A AL R +RG 
Sbjct: 25  IQQRLIFLVQRHLIDEDIMTITLNIRNRLGKKWRVNLKTKQVDMLLIHLAMALGRIKRGY 84

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
             + L+ +  +E+ ++  +  +++LHQ LL      +   E+ + +AN+Y L +A 
Sbjct: 85  VAKALNPDFFSEIERAVCFTKILKLHQELLTFIPFPIPKEEQSHFIANIYSLSLAQ 140


>UniRef50_C6AQX2 S-ribosylhomocysteinase n=4 Tax=Pasteurellaceae RepID=C6AQX2_AGGAN
          Length = 126

 Score =  114 bits (285), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL       +ID+ I   ++ V   L+    + V +EQ  M + H+ASAL R +RG 
Sbjct: 3   IQQRLWAFQMRELIDEHIVDTVLNVRQHLQRHWQVDVETEQVKMMLVHIASALGRIKRGH 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
              PL  + LAE+  +  +  V+ +HQ +L+   L +   E+ Y LAN+YGL +  
Sbjct: 63  RASPLYADFLAEIQSAVIFPQVLIIHQYVLELMPLSIPEEEQTYFLANVYGLVLDQ 118


>UniRef50_B9Y6L8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y6L8_9FIRM
          Length = 124

 Score =  111 bits (277), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 56/109 (51%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           RLNL  E G+I  D    +  ++ + + + H+ ++ E     + H+ +A  RS  GEE+E
Sbjct: 6   RLNLYLEGGMIQPDDVADVQAIITMFDQKYHIVLQEENADTFIAHLCAAFGRSATGEEVE 65

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           PL  E+ AEL     +   +Q+ + ++      +NP E+ Y L ++  L
Sbjct: 66  PLPPEVKAELEGLDSYPQSLQMLKDVMAATRNRLNPTEQDYALLHINNL 114


>UniRef50_UPI0001794F42 hypothetical protein CLOSPO_02901 n=1 Tax=Clostridium sporogenes
           ATCC 15579 RepID=UPI0001794F42
          Length = 117

 Score =  108 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 58/113 (51%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL LL +   ID+D    +++++   + +  + +  E G M +TH+A AL R ++ E
Sbjct: 3   LTLRLKLLKDGAQIDEDTYNNLLKIIKSFKKDFQIELSEENGGMFITHLAVALERIKKKE 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            +EP++  +  E+    +++    + + L K+  + V   E  ++L ++  L 
Sbjct: 63  LVEPIEELIFEEVRNDKNFKKANDILESLEKDINISVPEVERPFILMHIVTLL 115


>UniRef50_C3WF22 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817
           RepID=C3WF22_FUSMR
          Length = 120

 Score =  108 bits (271), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 60/113 (53%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++TRL +LC  G I  +  + M+ V+ + + +  + +  E G M  TH++ A+ R +  E
Sbjct: 3   LQTRLEILCSTGTISNETREVMLNVIKMFQEKHQITLTEENGAMMTTHLSMAITRVKNNE 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            ++ ++ E+  E+ +S   +   ++++ L     +++   E+ Y+L N+  + 
Sbjct: 63  PVKVINEEVYQEILESEFLEKAQEIYKDLESVLDVKLPEDEKKYMLVNICTIL 115


>UniRef50_B9CM75 Putative uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626
           RepID=B9CM75_9ACTN
          Length = 120

 Score =  105 bits (263), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 62/114 (54%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           R+ +L +AG +D++  + +  VV ++E EC      E   + +TH+A+AL R+   EEI 
Sbjct: 7   RIEILKQAGFVDENDAESLKNVVALIEHECGPAESDEHIGIIITHIAAALKRNVEEEEIA 66

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           P++ + L E+  S  +    ++   +   FA  ++  E G++L ++ GL +A  
Sbjct: 67  PINQQALEEVYASPVFPKANRIANDISDMFAERLSKDEFGFVLVHIAGLLVAHQ 120


>UniRef50_A6D1D8 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D1D8_9VIBR
          Length = 119

 Score =  105 bits (261), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           M+ R++LL E  VI +      M+ V +L  E ++   SEQ  MAMTH A A+ R  +  
Sbjct: 1   MKQRMSLLLEHNVISQIAFDATMRAVGILMIEWNVKEDSEQFQMAMTHFARAIDRVLQSN 60

Query: 61  EI-EPLDNELLAELAQSSHWQAVVQLHQVLLKEFAL-EVNPCEEGYLLANLYGLWMAAN 117
            I E LD+E+L E+     +  +V ++  L     + E+   E  +LL+NLY + ++ +
Sbjct: 61  PIVEGLDSEILKEMQDDDVFSDIVSMNNQLCSASGVPEMPETEISFLLSNLYAIKLSVS 119


>UniRef50_UPI0001C35378 PRD domain-containing protein n=1 Tax=Clostridium hathewayi DSM
           13479 RepID=UPI0001C35378
          Length = 120

 Score =  104 bits (260), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 1   METRLNLLCEAGVIDK---DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSR 57
           +  RL +L  +GVI +   D CK  ++++   + E       ++  M +TH+A A  R  
Sbjct: 7   LNQRLEILLNSGVISQRISDYCKTAVKLLIKQKPEAD----GDRAAMFITHLAMAGQRIL 62

Query: 58  RGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
            G+E +PLD ++L  + Q   +   +     +L +  LE    E+ +L  +L  L+M
Sbjct: 63  EGKEEKPLDGQILESVKQEPAYSKALDFLTYMLNQTDLEFPDTEKDFLTVHLCNLFM 119


>UniRef50_Q6LNG7 Putative uncharacterized protein PM1058 n=1 Tax=Photobacterium
           profundum RepID=Q6LNG7_PHOPR
          Length = 106

 Score =  103 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLA 71
           +I +    G ++ V++L +E  L   +EQ  MAMTH+A A  R    + I + LD ++LA
Sbjct: 1   MISQVAHDGTVKAVDLLVSEWQLDTSTEQLQMAMTHLARATDRILSDQPITQGLDEDILA 60

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEV-NPCEEGYLLANLYGLWMAA 116
           E+     +  +   ++ +L  F +E     E  + L+NL+ L+ A 
Sbjct: 61  EIISDDDFPVIQATNRQILGGFGIEQAPDAENTFFLSNLFSLYCAK 106


>UniRef50_D0GNT1 PRD domain-containing protein n=1 Tax=Leptotrichia goodfellowii
           F0264 RepID=D0GNT1_9FUSO
          Length = 120

 Score =  101 bits (251), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL++L  + VID++I   ++ ++  L+ +  + +  E G M +TH++ AL R ++ E
Sbjct: 4   LKFRLDILKNSEVIDEEIYNKVISLIEHLDKKWEITLTEENGAMFITHLSMALKRIKQNE 63

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALE-VNPCEEGYLLANLYGL 112
            +  +D  +  E+  S     + ++++ + K   +E +   E+ Y+L NL  L
Sbjct: 64  NVNNIDKTVFEEVMVSDKLDKIEEIYEDIEKNIFIEKLPEEEKKYILVNLLLL 116


>UniRef50_Q67S02 Putative transcriptional antiterminator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67S02_SYMTH
          Length = 125

 Score =  100 bits (249), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E RL LL E+G I  ++ +    ++  +E    + V  E G M  TH+A AL R R G+
Sbjct: 6   LEMRLRLLQESGQISPEVAELTRWILKRVEERYDMTVTEENGAMFTTHLAVALERLRSGQ 65

Query: 61  EIEPLDNELLAELAQ-SSHWQAVVQ-LHQVLLKEFALEVNPCEEGYLLANLYGL 112
            I+ + +E LAE+      W  V + +     +     V   E GYL A+L  L
Sbjct: 66  AIDEMVSEGLAEVKAYPEEWAFVNEVVAGEAGRRLGARVPEAEVGYLTAHLITL 119


>UniRef50_D1ALX8 PRD domain protein n=1 Tax=Sebaldella termitidis ATCC 33386
           RepID=D1ALX8_SEBTE
          Length = 116

 Score = 90.0 bits (222), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 62/109 (56%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           RL++L EA +ID++  + + +++N +  E  L + +E G M +TH++ A+MR +  E   
Sbjct: 5   RLDILVEAELIDQETYEKVKRIMNEVSEEFTLDLSTESGQMFITHVSMAIMRIKNNEATT 64

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            ++N +  E+ +S +++  ++  +++      E+   E+ YL+ N   L
Sbjct: 65  DVENAIFEEIKESENFENALRFAEIIENIIEHEIPKNEKEYLVINGCLL 113


>UniRef50_P44003 Uncharacterized protein HI0487 n=15 Tax=Haemophilus influenzae
           RepID=Y487_HAEIN
          Length = 125

 Score = 89.3 bits (220), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            I++ I   + ++ + L       V + Q    + H+A +L R  RG  +  L +E+L E
Sbjct: 15  QINQSIIDVIFRLRDRLAHYWQADVNTPQVDFMLLHIACSLGRIERGGCVSSLYSEMLEE 74

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +  +  +  V+ +HQ LLK     +   E+ Y LAN++ L +   +
Sbjct: 75  MQSAVIFPQVLAIHQDLLKLMPFSIPEAEQTYFLANIHSLVLEQKQ 120


>UniRef50_C1I3F9 Predicted protein n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I3F9_9CLOT
          Length = 129

 Score = 84.6 bits (208), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL++L +AG + K+    ++QV+N  E +  + +  +  +M +TH+ SAL R     
Sbjct: 18  LTLRLDILRDAGQLSKENYNKIIQVINYFEEKRGVKLLEDNASMFITHLCSALGRIEENN 77

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            +  LD+ +   L ++ ++   +++ + L      E+   E  +++ ++  L
Sbjct: 78  LVNKLDDVVAQSLKENENYDEALKVAKDLEAVLG-EIPDSELDFIVMHVCTL 128


>UniRef50_B0K1N4 PRD domain protein n=3 Tax=Thermoanaerobacter RepID=B0K1N4_THEPX
          Length = 124

 Score = 83.5 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R++LL +  VID D  K + ++   L     +    E   M +TH+A ++ R +  E++
Sbjct: 7   NRIDLLVQGNVIDFDTGKAIKKIDEELRVNYEICAEDEHYEMFITHLAMSIKRLKEEEKL 66

Query: 63  EP-LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           E  +D+EL  E+    ++   + + Q +     +++   E+ ++L +L  L 
Sbjct: 67  ESTIDDELFNEVKNCPNYYRALGILQNIEDRIEIKLPESEKRFVLLHLCNLL 118


>UniRef50_Q5WK94 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WK94_BACSK
          Length = 115

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           + TRL +L EAG I     +   QVV+    +       E   M +TH+A AL R  + E
Sbjct: 3   LYTRLQILKEAGTITDKAYRVTTQVVDEQVPDH----LHENYAMLVTHLAMALTRIEQNE 58

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            +    + ++ E+  S H  A  +  + +       +   E+ +L  +    + + +
Sbjct: 59  ALTGPGDAVMEEVLASPHLPAAKEAVEKIESLVGEPLPKEEQQFLYMHFVSTFSSVS 115


>UniRef50_C6P8P3 PRD domain protein n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6P8P3_CLOTS
          Length = 124

 Score = 75.8 bits (185), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL++L +   ID++     +++ ++L++   +   +EQ  M +TH+A  + R +   
Sbjct: 5   ITMRLDILLKGNAIDRETLSMTLKIDDLLKSYDTIYRNNEQYEMFITHIAMMIQRVKNNN 64

Query: 61  EI-EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            + E LD+++  E+ +   ++  V + + +       +   E  +++ +L  L 
Sbjct: 65  YVNEVLDDDIYDEIKKCLSYKEAVDILEKIEGISNTILPESERRFIILHLCNLL 118


>UniRef50_C9A355 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum
           EG2 RepID=C9A355_ENTGA
          Length = 117

 Score = 68.5 bits (166), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  +L +L ++G++D++    +  V++ L  +  +    +Q  + +TH+A A MR +  E
Sbjct: 2   IRDKLTVLLDSGIVDQETYDYVFNVLSYLLEK-EIVEEEQQADVFLTHLAMADMRRKNNE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALE-VNPCEEGYLLANLYGLW 113
            +  L++ + AE+    H+    +L Q L K  + +     E  Y   ++  + 
Sbjct: 61  TVNSLESFIQAEIEGDPHYLHSRELWQDLQKMTSEQSFADAELDYFYLHIINML 114


>UniRef50_A6TVY0 Transcriptional antiterminator, BglG n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TVY0_ALKMQ
          Length = 705

 Score = 61.5 bits (148), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 4/111 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++TR  LL    +IDK+  + +  ++ + E E    +        + H+A A+ R +  E
Sbjct: 199 IKTRNRLL---NLIDKETIRTLEGLIYIAEEEMGYKLADSAYVGLIVHLALAIKRIKNNE 255

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            I  +D E L EL Q+  +    +L   L   F ++++  E GY+  +L G
Sbjct: 256 II-IMDKEFLNELNQNPEFIIARKLALNLSDFFNIDIHEDEIGYITMHLMG 305


>UniRef50_C1I943 BglG family transcriptional antiterminator n=1 Tax=Clostridium sp.
           7_2_43FAA RepID=C1I943_9CLOT
          Length = 715

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             IDK I K + ++V+ LE E  + +        + H++ A+ R +  E I+ +D ++L 
Sbjct: 216 NFIDKSIIKAIEEIVSGLEKENDIRLVDSAYIGLVVHLSLAIQRIKNKENIK-IDPDVLE 274

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           ELA+   ++    L + +  +F +E+   E GY+  +L G  +
Sbjct: 275 ELAKLPEFEIGKMLVRNIESKFNIEIPVDEIGYITMHLKGAKL 317


>UniRef50_Q65MQ9 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis
           ATCC 14580 RepID=Q65MQ9_BACLD
          Length = 121

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E +L++L  + VI K+     +     L  +    V  +   M  THMA AL R + GE
Sbjct: 6   LEEKLSILLTSRVITKNAFNTTLNTFVFLSEKLKKEVIKDS-EMFWTHMAMALTRIKEGE 64

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             E   N ++ E+ ++ +  A+ ++   +     LE+   E  Y   +L
Sbjct: 65  SEEVPANAIINEMYETPYKSAIEEVIDFIHSLAGLELPEGELVYFYLHL 113


>UniRef50_B0K3R4 Transcriptional antiterminator, BglG n=12
           Tax=Thermoanaerobacterales RepID=B0K3R4_THEPX
          Length = 692

 Score = 60.4 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 51/108 (47%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +ID D    + + +  L+++    +        + H+A A+ R + GE IE +  + L 
Sbjct: 197 NLIDYDTVLKIEKAILKLKSQIDYEIVESSYLGLVVHLALAIKRLQNGETIE-MGEDNLQ 255

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           EL +++ ++   +L + L +E  + +   E GY+  +L G    +  +
Sbjct: 256 ELKKTNEYKFAKKLAKYLQEELDIPIPEDEIGYVTIHLIGAKYRSTTQ 303


>UniRef50_A8U9C7 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7
           RepID=A8U9C7_9LACT
          Length = 116

 Score = 60.4 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ +L +L E  VI+  +     +V+       ++    ++    +TH+A A  R    E
Sbjct: 2   IQEKLTILRENNVINDSVYDYAQEVLK-FMKAQNIINNEDEADTFITHLAMATARQYTEE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            I  +D  +  ++     +   ++    +     +     E  YL  +L  L 
Sbjct: 61  TINSVDQMINEQIKADQKYDEALKYWNEIAALAPIPFRENEAEYLHLHLVTLL 113


>UniRef50_B0A809 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
           16795 RepID=B0A809_9CLOT
          Length = 721

 Score = 59.2 bits (142), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +IDK I K +   ++    + +L +        + H++ A+ R R GE I  ++ ++L 
Sbjct: 208 NLIDKSIIKKVENSLSETIKDINLKISDSAFIGLVVHISLAVQRLRNGETIS-MEQDVLN 266

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           EL     ++   ++ Q + +EF ++V   E GY+  +L G  +
Sbjct: 267 ELKSIEQFKTATKIAQQIEEEFDIKVPIDEIGYITMHLRGSKL 309


>UniRef50_C9RTD1 PTS modulated transcriptional regulator, MtlR family n=5
           Tax=Geobacillus RepID=C9RTD1_GEOSY
          Length = 696

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++D+     + Q +  ++ +    +        + H+A A+ R ++GE I   D   L 
Sbjct: 200 GLVDRKKLSIIEQQIERVKEKLPFTMADSSYIAFVVHLALAIERIKQGEAIH-FDPRDLQ 258

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            L  +  ++    L + L + F +++   E GY+  +L G
Sbjct: 259 ALQATKEYEIARVLAESLERAFGIDIPNEEVGYMTMHLMG 298


>UniRef50_Q9KF98 BH0587 protein n=1 Tax=Bacillus halodurans RepID=Q9KF98_BACHD
          Length = 115

 Score = 58.1 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL++L +   I +       + V    T       ++  TM +TH+A A+ R  R E
Sbjct: 4   LKARLDVLRDTNTITERASLIAERTVEQFVT----DENADSYTMLITHLAMAVTRIDRLE 59

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            + P    ++ E+ +S   +   +    + +     +   E+ +L+ +   
Sbjct: 60  PLSPPPESIMKEIYESRDLEEAKRRVAWIEETMGDTLPQEEKEFLIMHFVS 110


>UniRef50_C0Z8I8 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599
           RepID=C0Z8I8_BREBN
          Length = 701

 Score = 57.3 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G+ID++    +   ++ L+ E   P+        +TH+A A+ R  +GE I   D   L+
Sbjct: 200 GLIDREKLIKVENALSHLDEELPYPLADSAYLGLVTHLALAMERIEKGEGIH-FDEHTLS 258

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           EL  +  ++    + + L + F +E+   E GY+  +L G  +
Sbjct: 259 ELNGTPEYEIASNIMERLKQIFQMEIPADEIGYITMHLRGAKL 301


>UniRef50_P96574 Putative phosphotransferase enzyme IIA component n=6 Tax=Bacillus
           RepID=MTLR_BACSU
          Length = 694

 Score = 56.9 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           GV+ K     M +++  L+ +    +        + H+  A+ R + GE I  ++   L 
Sbjct: 194 GVVSKGELLKMERILFQLKEKIAFSLSDSSYIALVVHLTYAIERIKLGETIT-MEQNELE 252

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           EL  +  + + +++   L + F + +   E GY+  +L
Sbjct: 253 ELMNAKEYSSALEIAGELERAFGVTIPEAEVGYITIHL 290


>UniRef50_B1C5P5 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1C5P5_9FIRM
          Length = 720

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L +  + D++    ++  ++ LE               + H+A A+ R ++G +I  + +
Sbjct: 202 LYKEALFDEEDLYKIIDSISYLEDLLETKFDDSSYVSLLIHLAIAMKRLKKGNKIL-MSD 260

Query: 68  ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           E L +L     +       + L   F +++   E GY+  +L G
Sbjct: 261 EQLEQLKNEDEYSVSKSFAKYLNTIFDIDIPDEEIGYITIHLMG 304


>UniRef50_C7T9M3 Conserved protein n=2 Tax=Lactobacillus RepID=C7T9M3_LACRG
          Length = 116

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           +L +L + G +  +     +  + + +      V      M + H++ AL RS + E ++
Sbjct: 8   KLQILYDVGKLSDED----LAFIRLADQYLVRTVGERDSEMFLIHLSIALERSHKQEPVD 63

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            L + L AE+     +   + + + + +   +  +  E  Y++ +L  + 
Sbjct: 64  ALPDNLWAEVTADPEYLNALNIWKHIAESRPVNFSDFETRYIIMHLVNIL 113


>UniRef50_Q5WDU8 BglG family transcriptional antiterminator n=1 Tax=Bacillus clausii
           KSM-K16 RepID=Q5WDU8_BACSK
          Length = 688

 Score = 56.1 bits (134), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +D +  + +   +  ++ +    +  +     + H   A+ R ++GE+I  +D   L 
Sbjct: 192 HFVDLETIRLVQSTIQRVKEKHFDDMADQSFIALVVHATLAIERIKQGEQIR-MDAGQLE 250

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            L +        +L + L + F + +   E GYL+ +L G
Sbjct: 251 ALHKEDSLPVAQELAEALAQTFQITIPEAEIGYLVMHLRG 290


>UniRef50_C1PAW0 PTS modulated transcriptional regulator, MtlR family n=2
           Tax=Bacillaceae RepID=C1PAW0_BACCO
          Length = 639

 Score = 56.1 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 8/112 (7%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +ID ++ K + +V+     +  + +         TH+A A  R + G  IE      LA
Sbjct: 187 QLIDPELFKKIKEVIVQKVNKYKIEISDISLENLATHIAIACRRIQEGFVIEE-----LA 241

Query: 72  ELAQSSH-WQAV--VQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           ++    H ++ +   ++ + +    +L     E  Y++ +L G  +   +E+
Sbjct: 242 DVLVDDHPFEKIVANEIIKEVEDFTSLTFPETEIDYIIVHLLGTKLLHKKEL 293


>UniRef50_B0MAI9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MAI9_9FIRM
          Length = 696

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +++++I   +++++   E E    +        + H+  A+ R   G+ I  ++ ELL  
Sbjct: 207 LLNEEILDKVIKILKKCEDEFLSRITRHSYIGLVIHLVIAIERLLSGKTIT-MEEELLRA 265

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           L +  +++   +L     +EF +EV   E  Y+  +L G  M    E
Sbjct: 266 LKEDPYYKKAKELTAYFEEEFHIEVPESESAYVFMHLKGARMKYAVE 312


>UniRef50_B6FZM9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
           13275 RepID=B6FZM9_9CLOT
          Length = 697

 Score = 54.6 bits (130), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++D DI K ++  +  L  E    +        + H+  A+ R    E IEP D+ L  +
Sbjct: 206 LLDTDIMKRVISCLINLNNEQIANLTDSSYAGLVIHITIAINRIMHNEIIEP-DSRLDED 264

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +     +   V +   L KEF +E+   E  Y+  ++
Sbjct: 265 IEHDRDYSLAVIIASSLEKEFDIEIPEIEVTYICLHI 301


>UniRef50_C5D9V5 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Geobacillus sp. WCH70 RepID=C5D9V5_GEOSW
          Length = 661

 Score = 54.2 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 26  VNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQL 85
           +  ++     P+  +       H+A A+ R ++G  I  +D   L EL +   ++   QL
Sbjct: 201 IRKMDEWLEFPLTDQSVISLTIHIAIAIKRIKKGHRIH-IDTNQLQELQKKPEYKLAEQL 259

Query: 86  HQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            + + +  A+++   E GY+  +L G  +  ++
Sbjct: 260 AKQIEQWVAVKIPKAEIGYITLHLLGARLRYDQ 292


>UniRef50_Q9K679 Transcriptional antiterminator n=1 Tax=Bacillus halodurans
           RepID=Q9K679_BACHD
          Length = 700

 Score = 54.2 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +I+ ++ + + +V+     +   P+        + H+  A+ R R+GE+IE +D   L+
Sbjct: 197 HLINLELVRNIQEVLADFRKQMVEPMADRAYIGLIVHLTLAIERIRQGEKIE-IDPSYLS 255

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           +L     ++    L + L ++  + +   E GY+  ++ G       E
Sbjct: 256 KLKMDKEFELAADLARRLEQKLGMNIPEAEVGYMTMHIRGAKAHIETE 303


>UniRef50_C1PBK9 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Bacillus coagulans 36D1 RepID=C1PBK9_BACCO
          Length = 620

 Score = 53.8 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           ++D+ + + Q++  + ++  +     +     TH+  A  R   G  IEPL         
Sbjct: 176 NQDLFQKVKQILIRIISKYRIRFSDIELQNLATHITLACKRIEDGFTIEPLPFHFKESYT 235

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
                    ++   + K   +   P E  Y+L +L G  +
Sbjct: 236 FERKVAK--EITGEVEKSVGIPFPPAEIDYILVHLLGTKL 273


>UniRef50_B8CZR0 Transcriptional antiterminator, BglG n=1 Tax=Halothermothrix orenii
           H 168 RepID=B8CZR0_HALOH
          Length = 741

 Score = 53.8 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++       +  V++  E +       E     + H+A A+ R   G++I+ L  E L  
Sbjct: 205 LVSGIDLTKIESVISFAEKQLGFQFADEAYASLLVHLALAISRLLEGKDIQ-LPEERLKV 263

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           + +S  ++   ++ +++ + F + +   E GY+  +L G  +
Sbjct: 264 IKKSDEYKIAKKIGKIMEQIFDISIPDSEIGYVTLHLMGAKL 305


>UniRef50_C9XLB5 Putative transcription antiterminator n=8 Tax=Clostridium difficile
           RepID=C9XLB5_CLODC
          Length = 712

 Score = 52.3 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 51/110 (46%), Gaps = 6/110 (5%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E RL  L +  +I K       ++     ++  + +        + H++ AL R + GE 
Sbjct: 207 ENRLLNLMDRCIIRKVEATLTKKL-----SDLDVNLADSAYIGLVVHISLALQRIKNGEN 261

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           I  +D E L EL+ +  ++   ++ + +  +F +++   E GY+  ++ G
Sbjct: 262 IT-MDKEFLKELSITEEFKLAKEIVKGMETDFNMDIPVDEVGYITMHIRG 310


>UniRef50_B6G9P7 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6G9P7_9ACTN
          Length = 648

 Score = 52.3 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGY 104
            +TH+  AL+R R G  + P++ E L E+ +S  +    ++   +     + +   E  Y
Sbjct: 215 LITHIVIALLRIREGCYV-PMEGEQLTEIRKSPSFPIARRISDSIGARTGVVLPDEEVAY 273

Query: 105 LLANLYG 111
           +  +L G
Sbjct: 274 IAIHLTG 280


>UniRef50_C4V0J7 MtlR transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC
           43531 RepID=C4V0J7_9FIRM
          Length = 708

 Score = 51.5 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++D    + +   V     + ++P  +  G   + H+A A+ R ++G+ I  +D   L 
Sbjct: 218 GLVDPAQIRRIDDAVAAETQDRNIPDSARVG--LVVHLALAVRRLQQGDTI-AMDAGTLE 274

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           EL Q+  +     +   + + F++ +   E GY+  +L G
Sbjct: 275 ELRQTEEFSVAETIAARMGEVFSISIPAAEIGYITMHLLG 314


>UniRef50_B0KCF7 Transcriptional antiterminator, BglG n=8 Tax=Thermoanaerobacter
           RepID=B0KCF7_THEP3
          Length = 652

 Score = 51.1 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
             K + ++V+  E++       E     + H+A ++ R +  ++++ L   +L  L Q  
Sbjct: 201 DYKQLEKIVSNAESKLKFRFSDEAFISLVIHVAISIERLKHKKDVK-LSKAVLNNLKQKD 259

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            +    Q+ + +  +F + +   E GY++ ++ G  M  N+
Sbjct: 260 EYVIAQQMAKEIEAKFNVVLPESEIGYIVLHIIGTKMQQNK 300


>UniRef50_A8FIW8 Transcriptional regulator n=2 Tax=Bacillus pumilus
           RepID=A8FIW8_BACP2
          Length = 652

 Score = 51.1 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
            + ++ ++  + +  +V        L +     +  +TH+A A  R    + +  +    
Sbjct: 179 NSTLLPEETYQFIQGIVRSRTKASGLYLSEIGLSNLVTHIAIACKRIEEKKIVM-MPETE 237

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           L E+     +Q   Q+ + +     +E    E  Y+  +L G  M
Sbjct: 238 LKEIQVQPVFQVAQQMAEDIRHVLGIEFPLSEMAYIAIHLMGAKM 282


>UniRef50_B7GJR6 Transcriptional antiterminator of mannitol metabolism n=3
           Tax=Bacillaceae RepID=B7GJR6_ANOFW
          Length = 691

 Score = 50.0 bits (118), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++DK     + + +  ++ +    +        + H+A A+ R  +GE I   D + L 
Sbjct: 200 GLVDKKKLFMIERQIEAMKDDLPFTIADSSYIALVIHLALAIERIMQGEAIH-FDAQHLQ 258

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
            ++ +  ++   ++ + L + F L +   E GY+  +L G  +
Sbjct: 259 TISMTKEYETAEKIAKRLEEVFHLVIPKEEIGYITMHLMGAKL 301


>UniRef50_C7TNE9 PTS system, fructose-specific IIA component n=1 Tax=Lactobacillus
           rhamnosus Lc 705 RepID=C7TNE9_LACRL
          Length = 644

 Score = 49.6 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           ID  +   + +VV     +  L +        + H+A A+ R + G  I   +++L+  +
Sbjct: 196 IDSSVVNILARVVQNASEKLGLSLSEYAIQSLVIHLAIAINRIKAGNPI-GQNDDLIRNI 254

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                    VQL  ++ KE  + +   E  Y+  +L  
Sbjct: 255 GNERK-SEAVQLAAMVEKEVNVRLPDEEIAYIQIHLIA 291


>UniRef50_C8NIB7 Putative uncharacterized protein n=1 Tax=Granulicatella adiacens
           ATCC 49175 RepID=C8NIB7_9LACT
          Length = 122

 Score = 49.2 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E +L++L  A VID+D  K +++  +    E  +   ++   + + H+A A  R R+ E
Sbjct: 2   LEEKLDVLVVADVIDEDTKKYILKASDFFRNEMKINDDTK-VEVFLIHLAMAESRRRKNE 60

Query: 61  EIEP-LDNELLAELAQSSHWQAVVQLHQVLLKEFALEV-NPCEEGYLLANLYGLW 113
            ++  ++  +  E+    ++    +    L      EV +  E  ++  +L  L 
Sbjct: 61  VLDAKMEEIIRNEVNNHHNFAECKEFWSRLSNYIGEEVYSENELEFIYLHLLNLL 115


>UniRef50_C0D786 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0D786_9CLOT
          Length = 673

 Score = 49.2 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 1/106 (0%)

Query: 6   NLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
             L E     ++    + + V  +    +  V S      + H+  A+ R +    + PL
Sbjct: 199 EALAEGEAEHQENMTRVARCVAEVIDTENFTVNSVAYQNLIVHICIAVQRIQENCYV-PL 257

Query: 66  DNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           D E    + +S  ++   ++ + L + FA+     E  Y+  +L G
Sbjct: 258 DEERQERIRRSKEYRIAQKITERLNQSFAIRFPDQEIAYIAIHLAG 303


>UniRef50_A7ZA83 LicR n=3 Tax=Bacillus RepID=A7ZA83_BACA2
          Length = 651

 Score = 48.8 bits (115), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 6   NLLCE-AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           +LL E AG++ KD    +   +        +P+        + H+A A  R R    +  
Sbjct: 176 DLLSEKAGILPKDDIHVIRTAIMKQVRNHKIPLSFFGLNNLIIHIAIACKRIRTENYVSL 235

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW-MAANE 118
           +  + L ++   + +Q+   + + L    ++     E  Y+  +L G   MA ++
Sbjct: 236 IPED-LHDIKLETEYQSAEAIVKELESALSVTFPEQETAYIAIHLLGTKRMAQSQ 289


>UniRef50_Q723N6 PRD/PTS system IIA 2 domain protein n=24 Tax=Listeria
           RepID=Q723N6_LISMF
          Length = 653

 Score = 48.8 bits (115), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
            G+  ++  K ++ +V                   + H+A A+ R R GE IE ++++ +
Sbjct: 200 TGIFPEEGLKEIIAIVQAFSERHDFAFTDYAFQSIVIHLAIAVERIRAGEYIENVESDPM 259

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
            ++  S        L  +L     +++   E GY+  +L   +   ++E+
Sbjct: 260 KDVFDSQR-NNTEILVSMLEDRLDIKIPAFEVGYIQLHLTAAYNQQHDEL 308


>UniRef50_C9KJT4 Transcriptional antiterminator, BglG family n=1 Tax=Mitsuokella
           multacida DSM 20544 RepID=C9KJT4_9FIRM
          Length = 705

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++DK +   + Q+V+ +E+     +        + H++ A+ R R+ E+I  +D   LA 
Sbjct: 200 LVDKQMIHDLEQLVHEVESGLPHHLSDTAFIGLVVHLSLAIQRMRKKEDIH-IDTATLAA 258

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           L +   ++   +L + +  +F  EV   E GY+  +L G
Sbjct: 259 LRKRREYRMAKELARRITAQFQTEVPEDEIGYITMHLMG 297


>UniRef50_Q8EN85 Transcriptional antiterminator (BglG family) n=1 Tax=Oceanobacillus
           iheyensis RepID=Q8EN85_OCEIH
          Length = 696

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 48/107 (44%), Gaps = 1/107 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++D +    + + +  +  +    +        + H+A A+ R ++G+ I   D+E   
Sbjct: 199 GLVDAEKLDKIEEQIQRMRNQLPYDLADSAYIGLVVHIALAMERLQKGDIIH-FDDEYKE 257

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           ++     ++   ++   L + F+L +   E GY+  +L G  +  N+
Sbjct: 258 QIKDEQEYKIAAEVIGHLEEAFSLFIPEDEIGYITMHLMGAKLRENQ 304


>UniRef50_B0K247 Transcriptional antiterminator, BglG n=13 Tax=Clostridia
           RepID=B0K247_THEPX
          Length = 705

 Score = 47.7 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 26  VNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQL 85
           + + E E          +  + H+A A+ R + G++I  +  E L  L  +  +     +
Sbjct: 220 IQIAERELETVFSDAAFSGLVIHIAIAIKRIQLGKDI-IMPKEELKALEITKEFAVASNI 278

Query: 86  HQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            ++L   F + +   E GY+  +L G  ++  
Sbjct: 279 AKMLEDHFKVSIPLDEIGYITVHLLGSNVSKT 310


>UniRef50_D1WYJ0 Transcriptional antiterminator, BglG n=3 Tax=Streptomyces
           RepID=D1WYJ0_9ACTO
          Length = 128

 Score = 46.9 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  R+ L  E G +  ++   +   +  LE E HL V      M  +H+  A+ R   GE
Sbjct: 5   LALRIQLFREGGQVKPEVADFVAAELAALEAEGHL-VTEATAAMLTSHLMMAVGRLLNGE 63

Query: 61  EIEPL--DNELLAELAQSS-HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            IE    D+++ AELA           +     +E    +   E  +L  +L  L
Sbjct: 64  PIEQFLTDDQVAAELADHPEAVVRARAVAARAERELGAALPESEINFLGMHLAVL 118


>UniRef50_C1QBY4 PTS system IIA component; transcriptional antiterminator, BglG
           family n=1 Tax=Brachyspira murdochii DSM 12563
           RepID=C1QBY4_9SPIR
          Length = 621

 Score = 46.9 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
           I K + + V     +  + +        + ++  ++ R + G+ I+  D ++L ++ +  
Sbjct: 172 INKSIEKFVIDFIKDNDIKLSEINLENFILYILVSIERIKMGKVIDCYDKDILKDIKEEE 231

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
             +   QL ++L KE  ++ N  E+ ++  ++    +  + E
Sbjct: 232 -LKLANQLAEILEKESNIKFNEAEKIFIAIHIASKSLLISSE 272


>UniRef50_Q8EMS7 Transcriptional antiterminator of lichenan operon n=1
           Tax=Oceanobacillus iheyensis RepID=Q8EMS7_OCEIH
          Length = 648

 Score = 46.5 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 2/101 (1%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE--PLDNELLAELAQSSHW 79
           +  ++        + +          H+A A++R R G  I+      E + ++  +  +
Sbjct: 197 IKNIIIQQLDSHQMTLSDIAIHNLFIHIAIAVLRIRDGHPIDFNAAHREEMQDMKDTKAY 256

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
               ++ +   K+  L     E  Y+  +L G  M  +  +
Sbjct: 257 FVAEKIVEDTEKQLHLSFPKTETTYVALHLLGTKMVGSTNI 297


>UniRef50_C6VLU3 Transcription regulator, mannitol operon n=2 Tax=Lactobacillus
           plantarum RepID=C6VLU3_LACPJ
          Length = 634

 Score = 46.5 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           ++K     M +V+N       + V   Q    + H   A+ R + GE I     +    +
Sbjct: 193 VNKQTLNQMQKVLNKFVKILKVDVNEYQYESLLIHTTIAIQRIKNGEFITQTTTQNFDTM 252

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           A S     +V++   L+  F  E+   E  YL  ++  +
Sbjct: 253 AISPSTNKLVKM---LIVAFKCEIPDEEIAYLNMHVAAI 288


>UniRef50_Q184K6 Putative transcriptional antiterminator n=6 Tax=Clostridium
           difficile RepID=Q184K6_CLOD6
          Length = 656

 Score = 46.5 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G+  +D    ++ ++     E        +    + H+A A+ R R+GE IE     L  
Sbjct: 198 GIFSEDDLSIIIDILRNFSRERKFEFSDYEFQSLVIHLAIAVERIRKGEYIE---ESLYI 254

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
              +++       L + L ++F++ +   E GY+  +L  
Sbjct: 255 GNIENNQMSNTNYLAKQLEEKFSILLPKSEIGYINLHLVA 294


>UniRef50_UPI0001C42D0A transcriptional antiterminator n=1 Tax=Bacillus pseudofirmus OF4
           RepID=UPI0001C42D0A
          Length = 713

 Score = 46.1 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 54/99 (54%), Gaps = 2/99 (2%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +ID ++   +++ ++ L  +           +A+ H++ A+ R +RGE+IE   +E   +
Sbjct: 199 LIDLNVILKVLETLHELRRDGEPIADVSYVGLAV-HLSLAVDRIKRGEKIEK-HSEGFEK 256

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           + +++ ++A  +L + L + F++++   E  Y+  +L G
Sbjct: 257 VLKTNEYEAAKRLVKKLEETFSIDIPQIEVAYVAMHLLG 295


>UniRef50_UPI000178876C transcriptional antiterminator, BglG n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI000178876C
          Length = 295

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE-- 72
           D  + +   Q++N++  E    +  +      +H+   + R R+G +I  ++   L E  
Sbjct: 76  DPQVMEITDQILNLIGQEFPGTLNDKVYLALPSHIQFTIYRIRKGMDI--INP-FLEETR 132

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           ++    +    +  +++ K F +EV   E G+L  ++Y 
Sbjct: 133 ISFPKEYDIAAKAAELIGKTFDIEVPEDEIGFLTYHVYS 171


>UniRef50_A6LX09 Transcriptional antiterminator, BglG n=11 Tax=Clostridium
           RepID=A6LX09_CLOB8
          Length = 714

 Score = 45.0 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 24  QVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVV 83
            V+   E +    +        + H+A A+ R    ++I  +D+  L  L+++  +    
Sbjct: 196 NVIKTAEDQLESTLSDYSFNNLLIHIAIAIKRIELAKDI-VMDDNELKNLSKTCEFSIAS 254

Query: 84  QLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            + ++L   + +++   E GY+  +L G  +   EE
Sbjct: 255 AMARMLENRYDIKIPKSEIGYMTIHLLGSNVMLKEE 290


>UniRef50_Q040S8 Beta-glucoside operon antiterminator n=12 Tax=Lactobacillus
           RepID=Q040S8_LACGA
          Length = 282

 Score = 45.0 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R  LL      D    +   ++V+ L+ E ++ +          H+A+++ R+++G   
Sbjct: 55  QRKLLLETIHETDPIFFQISQKIVDRLKHEENIELADSVYITLTDHLATSVERAKKGLY- 113

Query: 63  EPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
             L N+ + E+       ++  +   ++L  +F L     E G++  ++  
Sbjct: 114 --LSNKFIWEVKNYYPKEYRYGLWALKLLDAQFDLNFPEDEAGFIAVHIIS 162


>UniRef50_P46321 Putative phosphotransferase enzyme IIA component n=2 Tax=Bacillus
           RepID=LICR_BACSU
          Length = 641

 Score = 45.0 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 2/111 (1%)

Query: 2   ETRLNLLCE-AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ET +++L E A ++ K+  + +   +        +P+ +      + H+A A  R R   
Sbjct: 172 ETEIDVLNEKADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTEN 231

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +     + +  +     +QA   + + L  + ++     E  Y+  +L G
Sbjct: 232 YVSLFPKD-MDHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLG 281


>UniRef50_Q67SK7 BglG family transcription antiterminator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67SK7_SYMTH
          Length = 275

 Score = 44.6 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
             R   L     +  D+     +++N+       P+  E       H+A+ + R R+G  
Sbjct: 55  RNRKRFLRLTETLSGDVIGVAEEILNLAAARFG-PLGEEAHLTLAEHLAATVDRVRKG-- 111

Query: 62  IEPLDNELLAELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
             P+ N  LA++       +    Q  +++     + +   E+G L  +L G W   + +
Sbjct: 112 -MPIPNPFLAQIQLLYPEEYALAGQAVEMIASRLGVTLPEEEQGILALHLLGAWRRESPK 170

Query: 120 V 120
           V
Sbjct: 171 V 171


>UniRef50_C0D455 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0D455_9CLOT
          Length = 639

 Score = 44.2 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
            +G+  ++ ++  E  + +     +  + H+  AL R R    IE  D  L AE   +  
Sbjct: 196 VEGIRIILRLVCREFSIVLSDASLSNLVIHVFIALTRYRFYNFIEA-DEALQAEYRDAVE 254

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           + A  +L + L + +   +   E  Y   +L
Sbjct: 255 YAAAKRLTEALEEAYDFVIPDDEVIYYAMHL 285


>UniRef50_B0MGK7 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MGK7_9FIRM
          Length = 507

 Score = 43.8 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIE-PLDNELLAELAQS 76
             + Q++  +E     P   ++      M H+  AL R R G  +  PL++++       
Sbjct: 313 DLVTQLIARVEERFGFPYSEDENLAENLMLHINMALERIRSGMNVSNPLNDDIYQS--HP 370

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
             +  V Q    +    ++ V   E GY++ 
Sbjct: 371 KLYDIVKQSFIEVFNHTSVPVPDDEIGYIVI 401


>UniRef50_Q03GK2 Transcriptional antiterminator n=1 Tax=Pediococcus pentosaceus ATCC
           25745 RepID=Q03GK2_PEDPA
          Length = 625

 Score = 43.8 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRS-EQGTMAMTHMASALMRSRRGEEIE-PLDNELLA 71
           I K+    +  +++ + +   + +   E       H++  + R + G+ I+ P+  ++ A
Sbjct: 280 ISKETLNLIKSILSYVRSIYRIDLTGPEFLNQFAIHVSRLIQRLKSGKSIQNPMATQMKA 339

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                + ++  V +   +  +  +EV   E  Y+  ++
Sbjct: 340 --QSPTVYECAVLISHKIASQVGVEVPDNEIAYIAMHI 375


>UniRef50_A8W0Y8 Transcriptional antiterminator, BglG (Fragment) n=1 Tax=Bacillus
           selenitireducens MLS10 RepID=A8W0Y8_9BACI
          Length = 200

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMT-HMASALMRSRRGEEIEPLDNELLAE 72
           +D+     M + ++ LET     + +E   + +T H+  A+ R   G+    + N  L E
Sbjct: 2   VDEQFVGVMNEFIDKLETRFGANL-NEHIHIGLTDHLHFAVKRIENGQ---GIHNPFLQE 57

Query: 73  --LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
             LA    +    +L +    +  + + P E G++  +++ 
Sbjct: 58  TELAYPQEFAVATELTEWFGNQVGIRIPPGEIGFITLHIHS 98


>UniRef50_B6GBJ5 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GBJ5_9ACTN
          Length = 616

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGY 104
            + H+A AL+R   G  + PL +E ++++ + S + A  ++   +     +E+   E  Y
Sbjct: 185 LLVHIAIALVRINAGCYV-PLASEDMSDIERRSEYAAARRVAGGIKSRLGMELPEEEVAY 243

Query: 105 LLANLYG 111
           +  +L G
Sbjct: 244 IAIHLAG 250


>UniRef50_C7REJ5 PTS modulated transcriptional regulator, MtlR family n=2
           Tax=Anaerococcus RepID=C7REJ5_ANAPD
          Length = 625

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D+++   +  ++  ++      +        + H+  +++R + G+ I+ L +EL   + 
Sbjct: 182 DEELFTRIQAIIADIDFPESFYMPYANFKNLVVHIYISILRIKEGKYID-LSDELSKRVI 240

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
               +    ++ + L K+  L     E  YL  +L  
Sbjct: 241 SYDEFNIANKVVKELSKKLDLTFPEDEILYLTMHLIS 277


>UniRef50_C4G9M5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles
           DSM 14600 RepID=C4G9M5_9FIRM
          Length = 698

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGY 104
            + H+A A+ R ++G  +E  D  L+ +L     +    ++   + +EF++ +   E  Y
Sbjct: 234 LIFHLAIAVERVKKGAIVEE-DPGLVNKLGTWDEYALAGKIRGEIEREFSIHMPDQELSY 292

Query: 105 LLANLYGLWMAANE 118
           +L +L G  MA +E
Sbjct: 293 ILLHLLGSKMAYHE 306



 Score = 38.8 bits (89), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 15  DKDICKGMMQVVNVLETEC--HLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLA 71
           ++D+ + + ++++  +TE    L    E     + H+  A+ R      I  P+  E+  
Sbjct: 318 EEDLLEIIDRMIDQFDTEMANSLKCDEEFIRGLIMHLQPAMFRMSEKMSIYNPVLPEIKR 377

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLAN 108
           E      +    +  +V+  E A EV+  E G+L  +
Sbjct: 378 E--YPEIYAKSRRAAEVIRDETAFEVSDDEIGFLSMH 412


>UniRef50_C2H7N3 BglG family transcriptional antiterminator n=12 Tax=Enterococcus
           faecium RepID=C2H7N3_ENTFC
          Length = 661

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 6   NLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
             L ++        + ++ ++     E  L V          H+A  + R R G EI+ L
Sbjct: 185 EYLGQSRFFTDISFEELVIIILDETREAKLKVSDFIIQNLSLHLALGIKRLREGFEIKEL 244

Query: 66  DNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             E   E++    +Q   ++ Q +     +     E  YL  +L
Sbjct: 245 GIE--QEVSDRVEYQVAQRIVQRIEVIADVSFPQEEIAYLTLHL 286



 Score = 38.4 bits (88), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIE-PLDNELLA 71
           D+++ K +++V+  L  E    +  +       + H++  ++R  RG  IE PL  E+  
Sbjct: 298 DQELSKEVVKVLKRLSQEFRFSLIEDHQLFNGLLDHLSPMMIRLSRGIRIENPLTEEIKK 357

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           E      ++AV      +       +N  E  YL  +L
Sbjct: 358 E--NPKVFEAVKTHFSNMPALKNYTINEDEWAYLALHL 393


>UniRef50_C7IC29 Transcriptional antiterminator, BglG n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IC29_9CLOT
          Length = 643

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 24  QVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVV 83
            +++  E +    +  E      TH+  ++ R  +G +++  ++EL+         Q   
Sbjct: 218 NIIHNAEKKFAFFMPEEHYNSMFTHLVISIGRLLKGIKVDD-ESELIEGQCNDIETQVAR 276

Query: 84  QLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            +   L +EF + +   E  Y+  +L GL + +  +
Sbjct: 277 YIVSRLEEEFKISIPQAEFAYICMHLMGLNIYSGTD 312


>UniRef50_C6IY31 Transcriptional antiterminator n=1 Tax=Paenibacillus sp. oral taxon
           786 str. D14 RepID=C6IY31_9BACL
          Length = 650

 Score = 43.0 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
                 + + +  LE +  L    E     + H    + R++  + I   + E    +  
Sbjct: 187 PHELDIVTRELKQLELDAQLAFTDEAFDNLLIHTLLMIRRTKLKQPITFSEQE-KVFVRG 245

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
              ++      + L + FA+     E  YL A++ G
Sbjct: 246 KPEFRWTGAFIRKLERFFAVRFPEDEVAYLTAHILG 281


>UniRef50_A8AYJ7 Transcription antiterminator BglG family n=3 Tax=Streptococcus
           RepID=A8AYJ7_STRGC
          Length = 662

 Score = 42.3 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 31  TECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLL 90
            E  L +        + H+A +L R   G +I+ LD+  + E  +        ++ + + 
Sbjct: 206 REGQLKLSDFVIQNLVIHIALSLKRIGEGFQIKQLDSWSMDEYREEGKI--AEKILKRVY 263

Query: 91  KEFALEVNPCEEGYLLANLYG 111
               L+    E  Y+  +L  
Sbjct: 264 HSTGLKFPKEEVDYITLHLVS 284


>UniRef50_C0QXV4 Transcriptional antiterminator , BglB n=1 Tax=Brachyspira
           hyodysenteriae WA1 RepID=C0QXV4_BRAHW
          Length = 620

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 8/92 (8%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
           + ++ ++     +  +          + ++  ++ R +    I   + +++ ++  S   
Sbjct: 174 EKLIGIIINFLNKYEIKFSEINLENFIQYINVSISRIKNNNFICSYEKDIIKDI--SEEI 231

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           +   +L + +  E  +E N  E  ++  ++  
Sbjct: 232 RLSEELIKQIQNEIDIEFNDTEIIFIAIHIAS 263


>UniRef50_A0AMB6 Complete genome n=18 Tax=Listeria RepID=A0AMB6_LISW6
          Length = 638

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           E     +   + + QVV     + ++ +        + H+A A+ R +    +   D   
Sbjct: 188 ERNFFSEVNLEMIEQVVISNIAKYNIHMTDISVKNLIIHIAIAVCRVKDNCYVHVTD--- 244

Query: 70  LAELAQS-SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           L ++  S   ++A   + + +     +     E  YLL +L  
Sbjct: 245 LEDIEFSIPEFRAAQDIIKEIDLSEGIHFPESEISYLLLHLSS 287


>UniRef50_A6M2G4 Sigma-54 factor, interaction domain-containing protein n=1
           Tax=Clostridium beijerinckii NCIMB 8052
           RepID=A6M2G4_CLOB8
          Length = 895

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELL 70
            ++DKD+   + +++   E E  + +  +       H+++++ R RR ++I  P  + + 
Sbjct: 434 NIVDKDVMDIIEEIILFCEEELGIKLDKKISYGLAVHISNSIDRIRRNKKIVNPKLSSIR 493

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYL 105
            E      +   +   +++ +   + +   E G++
Sbjct: 494 EE--NKKEFSVALDALKMIERSIDISMPIDEAGFI 526


>UniRef50_B9Y2S2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y2S2_9FIRM
          Length = 632

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 42/107 (39%), Gaps = 3/107 (2%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           ++ L +  +        +  V+       ++ + ++  +    H+  A+ R      I  
Sbjct: 173 IDFLPQETMYKSSQLSLIQHVIAESLMNANISITADSCSALSLHILIAINRVETNNLI-- 230

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            + E+   + QS  ++  + +++ + + F + +   E  Y   ++ G
Sbjct: 231 -NQEVSEAMRQSLEYKTAIDINRSIEEIFHVSLPEAELCYFAFHING 276


>UniRef50_A0Q2H7 SACPA operon antiterminator n=3 Tax=Clostridium RepID=A0Q2H7_CLONN
          Length = 279

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L     +D  I +    ++ ++  E   P+        + H+   + R + G     L+N
Sbjct: 63  LQFTNNLDPKIAELTKDILKIISEEFSRPLNPNVHVNLIDHIQFTVKRLKSGMI---LEN 119

Query: 68  ELLAE--LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
             L E  L     +    +  ++L K   +     E G++  ++ G
Sbjct: 120 PFLTETKLLYPKEYAVAEKAVEILSKGLNMHFPDAEIGFITLHICG 165



 Score = 38.4 bits (88), Expect = 0.078,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 7/92 (7%)

Query: 25  VVNVLETECHLPVRSEQGTM--AMTHMASALMRSRRGEEIEPLDNELLAELAQSS--HWQ 80
           ++N +  + ++ +          + H+   L R +  +    L N LL EL + +   ++
Sbjct: 185 ILNFVSKKLNITLDPHSFEYKGFVNHLRGVLNRIKNNKI---LKNNLLTELKKRNIIEYK 241

Query: 81  AVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
               + +++     + V   E GY+  ++  L
Sbjct: 242 IAYDVSKIIENVLQISVPEDEIGYITIHIMKL 273


>UniRef50_A4EAF5 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EAF5_9ACTN
          Length = 272

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 12/109 (11%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           VI +D       +V +L  E ++ +  +       H++ AL R R+G      +N LL E
Sbjct: 65  VISED-------IVQMLRRELNVDINDKILIALADHISLALERERKG---ISCENPLLLE 114

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           + Q     +    +  Q++ +   ++++  E+G++  ++    M    +
Sbjct: 115 IQQFYRKEYALAGRALQIIKEYMGIQMSEEEQGFITLHIVNATMPQRSD 163


>UniRef50_C6PFK2 PTS modulated transcriptional regulator, MtlR family n=3
           Tax=Thermoanaerobacter RepID=C6PFK2_9THEO
          Length = 651

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
               + +++   E + +  +        + H+A ++ R   G+++     +L     +  
Sbjct: 189 DLNAIQRIIQGSEEKFNYILSDVSFKGLLIHLAISIKRLWEGKKVTLDLKDLNLLKKEKE 248

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            W+    L + + K F + V+  E GY+  +L G  +  + E
Sbjct: 249 -WEIAKDLAKNIEKRFNVVVDDTEIGYITMHLMGAKLQNDIE 289


>UniRef50_O31644 Putative phosphotransferase enzyme IIA component n=19
           Tax=Bacillaceae RepID=MANR_BACSU
          Length = 648

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 1/93 (1%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
              + + +  L+ +  L    E     + H    + R +  + I  L  + +A + +   
Sbjct: 193 VDFVTKEIKSLQKKHSLYFTDETFESLLLHTLLMVRRIKMKQPIS-LSPKEMAAVKKKKE 251

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           +Q      Q L   FA+     E  YL  ++ G
Sbjct: 252 YQWTFACLQRLEPVFAIRFPEEEAVYLTLHILG 284


>UniRef50_C4FAP7 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
           DSM 13280 RepID=C4FAP7_9ACTN
          Length = 295

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
           +RL  L +   I  +       +V +L  E    +          H++ AL R + G   
Sbjct: 56  SRLERLIKG--IPSEYLLIAEDIVAMLRRESDSVIDDSVLIALTDHISMALEREQAGIIC 113

Query: 63  EPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
              DN LL E+ +     ++  ++  +++     +E++  E G++  ++    M    +
Sbjct: 114 ---DNPLLFEIKRFYGREFELALKAREIIRGHLGIEISEAEVGFIALHIVNATMKQRTD 169


>UniRef50_O07655 Antiterminator homolog n=16 Tax=Enterobacteriaceae
           RepID=O07655_ECOLX
          Length = 293

 Score = 41.5 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E +  L      +D +      ++V   E      +      +   H+++A+ R   G +
Sbjct: 71  EQKNKLYKLIEHVDIEYVSVAEKIVQYAEKNLEKNLNPSLLLILADHISNAISRVVSGIQ 130

Query: 62  IEPLDNELLAELAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           I   +N  L E+     + +        ++ ++F++++   E G++  ++  
Sbjct: 131 I---NNVFLDEIKALYKAEYAISRDALTIINEQFSVQLPDDEIGFIALHILN 179


>UniRef50_Q03E27 Transcriptional regulator with AAA-type ATPase domain and a
           DNA-binding domain n=29 Tax=Bacilli RepID=Q03E27_PEDPA
          Length = 976

 Score = 41.5 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A ++DK I     QV   +E +     +         H++S + R + G+ +  + N+L+
Sbjct: 486 AEIVDKGIIDFAKQVQPKIENQLDYHFKENFIYAMSLHISSFIKRIQSGKPMRLMGNDLV 545

Query: 71  AELAQ-SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           A +            + ++L + + + +   E  YL   L  L
Sbjct: 546 AMVKDYPEELAVAKSIKEMLEQRYGMPIPESESYYLAVLLISL 588


>UniRef50_C8WQV6 Transcriptional antiterminator, BglG n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WQV6_ALIAD
          Length = 674

 Score = 41.5 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 48  HMASALMRSRRGEEI-EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLL 106
           H+A AL R R G  I  PL   + A       + A     + +     L +   E G+L 
Sbjct: 346 HLAPALDRVRAGLPIRNPLLETVKA--RYPELFAAAESASREVFAPHGLRLPDEEIGFLA 403

Query: 107 ANL 109
            +L
Sbjct: 404 MHL 406


>UniRef50_B0MGF2 Putative uncharacterized protein n=4 Tax=Clostridiales
           RepID=B0MGF2_9FIRM
          Length = 291

 Score = 41.5 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 22  MMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--AQSS 77
           +  V++ ++    + +          +TH+     +   G  ++ ++ EL   +      
Sbjct: 186 IKNVIDKVKDYFQMELTETSLNYERFITHLKFLSRKVMSGGGMDEIEPELRKMISAMYPD 245

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            +Q   ++ + + KE+  E++  E  YL  ++  +  +   +
Sbjct: 246 EYQCSREIAEYIKKEYRREMSEGEIVYLTMHIERIKSSNQTK 287


>UniRef50_C6CTN7 Transcriptional antiterminator, BglG n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6CTN7_PAESJ
          Length = 286

 Score = 41.5 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 20  KGMMQVVNVLE--TECHLPVRSEQGTMAMTHMASALMRSRRGEEIE-PLDNELLAELAQS 76
           + M ++V  +E   E  L  +S      + H+   + R  + +E E P   E+  ++   
Sbjct: 186 ELMNEIVERIEGWREAPLSKKSSDYARLIMHLRYMMERILQNKETENPFSAEIKDKI--P 243

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           +  Q    + Q++ +   ++V+  E GYL  +LY L+ + + E
Sbjct: 244 TEHQKAELIAQMIGERLNVKVSSDEIGYLAMHLYRLFRSVDAE 286



 Score = 38.4 bits (88), Expect = 0.067,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA-E 72
           +D ++ +   Q+++ +      PV  +      +H+   + R R G EI  ++  L   +
Sbjct: 75  LDPEVVQISEQIIDEIRERLGTPVDPKVYFALPSHIQFVVYRLRNGMEI--VNPFLYETK 132

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           +     ++   +  +++ ++F + +   E G+L  ++Y 
Sbjct: 133 MCYPQEFKIAAKAAKMISEKFDITIPEDEVGFLTYHVYS 171


>UniRef50_Q184U4 Putative transcription antiterminator n=5 Tax=Clostridium difficile
           RepID=Q184U4_CLOD6
          Length = 514

 Score = 41.1 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 1/96 (1%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
             + + Q+           +  E     + H+A  + R      I  L      EL +  
Sbjct: 202 DFEKLSQITLHTLQVEKSNLSDEYYINFLIHIAICIKRISIKRYIN-LSEGFFRELLEHE 260

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           +++    L   L + F +E    E  Y+L ++ GL 
Sbjct: 261 YFEKSKILCANLSEAFDVEFIDEEVCYILLHIEGLL 296


>UniRef50_A5KQG9 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
           27756 RepID=A5KQG9_9FIRM
          Length = 217

 Score = 41.1 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G I  +  + + ++    + E     + ++    + H+  A+ R +       LDN    
Sbjct: 3   GAIPPEYFELVEEIFEKAKEEYGFLPKEKETLALLDHIHFAIKRMKENLV---LDNPFET 59

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           E+ Q     W+  +   + + + F +E+   E GY+  ++  
Sbjct: 60  EIRQFYPKEWEIGLYAKKCIKRRFGIEIPDAEVGYIAMHIIA 101


>UniRef50_D1B7A6 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Thermanaerovibrio acidaminovorans DSM 6589
           RepID=D1B7A6_THEAS
          Length = 646

 Score = 41.1 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 26  VNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQL 85
           V        + +  E       H+A ++ R R G  +E   +E L         +A   +
Sbjct: 199 VRRALEMAQVRLTGEAVLGLTVHLAVSIKRVRTGGALEICRDEGLE---GRREMEAARLM 255

Query: 86  HQVLLKEFALEVNPCEEGYLLANLYG 111
            + + +   + + P E  YL  ++  
Sbjct: 256 ARWVEEGLGVTMPPGEVEYLAMHVMS 281


>UniRef50_B4U3Q3 BglG family transcription antiterminator, PTS system IIA component
           n=8 Tax=Streptococcus RepID=B4U3Q3_STREM
          Length = 665

 Score = 41.1 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGY 104
            + H+A  + R R G  +      + A + QS  +Q  +++   + +   +     E  Y
Sbjct: 222 LVLHIALMVQRIRSGYPLAFF--SIPAAIRQSDEYQVALRILYRVEEVMGIRFPKEEANY 279

Query: 105 LLANL 109
           +  +L
Sbjct: 280 IALHL 284


>UniRef50_C9KQ73 Putative transcription antiterminator GlcT n=1 Tax=Mitsuokella
           multacida DSM 20544 RepID=C9KQ73_9FIRM
          Length = 273

 Score = 41.1 bits (95), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLD 66
           L     +D    +   +V++                MA  H+A AL R RRG  +  PL 
Sbjct: 63  LQRVNGLDPHAVELAARVLDEARKSFPAMTDDILLPMA-DHIAMALERCRRGIRLPNPLQ 121

Query: 67  NELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           ++++  +     ++   Q    + +E  L + P E GYL  +++ 
Sbjct: 122 HDIM--VMFPDEYRIAEQGLHAIEREEGLSLPPEEAGYLSLHIHA 164


>UniRef50_A8U731 Transcriptional regulator n=1 Tax=Carnobacterium sp. AT7
           RepID=A8U731_9LACT
          Length = 641

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 12/113 (10%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E+RL    E+ +I++ I +    +  + + +    V  + G   + H+ SAL R R   
Sbjct: 294 LESRLET-PESELIERVIVE----INEMYQLDFRQDVILKNG--LLLHLESALHRIRLN- 345

Query: 61  EIEPLDNELLAELAQSSHWQA--VVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
              P++NEL+ E+  +  +       L   L   F ++++  E G+L  +  G
Sbjct: 346 --MPINNELIEEIKNNYPFPMQLAKILASSLETNFNIKIDINEVGFLTLHFCG 396



 Score = 38.4 bits (88), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I       + ++V     +  +P+        + H+  A+ R R            + E 
Sbjct: 188 ISSTDKVSVEEIVIRNIRKYQIPITDIGFRNLIIHVEIAISRLRFQNNSIDQKPNTIEE- 246

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
             S  +     + + +  +  L +   E   +  +L G
Sbjct: 247 -HSDEYYCAKAIAKEIEAKINLTIPENEIANIYLHLLG 283


>UniRef50_D1B6P9 Transcriptional antiterminator, BglG n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6P9_THEAS
          Length = 285

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 33  CHLPVRSEQGTMAMTHMASALMRS-------RRGEEIEPLDNELLAELAQSSHWQAVVQL 85
             L   S      + H++ ++ R          G+ I  L+  +  E      +   ++L
Sbjct: 193 FRLDRLSPHYMRFIRHLSFSIDRVEGGIEGDLEGDPISTLEETMKRE--NPVPYGIALKL 250

Query: 86  HQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
              +       + P E  YL  +++ L+ +   +
Sbjct: 251 CLYMRNALDRPIPPAEVVYLTIHIHRLYNSKQRD 284


>UniRef50_B0KCX3 PTS system transcriptional activator n=13 Tax=Clostridia
           RepID=B0KCX3_THEP3
          Length = 901

 Score = 40.7 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           V+DK I   +   +N    +   P   +       H+AS++ R   G++I     E + +
Sbjct: 443 VVDKKIVDIVNDFLNYASKKLKRPFSEKTLYGLSMHVASSVERILSGKDIVNHQLENIKK 502

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           + +   ++    L + + KEF ++V   E G++   L 
Sbjct: 503 VYE-KEFEVANVLRERVQKEFNIKVPDDEVGFVTMFLC 539


>UniRef50_C6DCM5 Transcriptional antiterminator, BglG n=7 Tax=Enterobacteriaceae
           RepID=C6DCM5_PECCP
          Length = 278

 Score = 40.7 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  D      Q++ + +    L V+         H+  A+ R ++G+ I+ L   +L ++
Sbjct: 66  IPPDCLAVTQQIITLAQKTLRLNVQDTLFLALSDHINFAIQRHKKGQTIKNL---MLWDI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            Q   S +   ++   ++     +++   E G++  +L  
Sbjct: 123 RQFYHSEFAVGLEALALIRTRLGIDLPEDEAGFIALHLAN 162


>UniRef50_A8R9W1 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM
           3991 RepID=A8R9W1_9FIRM
          Length = 515

 Score = 40.7 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           ID +I +  +QV+   E      +        + H+    +R R G  +   D   + EL
Sbjct: 199 IDDEIKE-FLQVLKHSENSYLHTLLCPSLFQVLLHLFICFIRVREGHYVSLSDP-FIEEL 256

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
                ++   +L Q L + + +  +  E  YL   L  L  +++ 
Sbjct: 257 KSKPFYEETKKLIQALEEYYHISFSETEIRYLQVFLISLQSSSDT 301


>UniRef50_C6Q8D8 PTS system transcriptional activator n=1 Tax=Thermoanaerobacter
           mathranii subsp. mathranii str. A3 RepID=C6Q8D8_9THEO
          Length = 897

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            V+  +I + + +++   E   +  +  E       H+ +A+ R +R  +I  ++ +L  
Sbjct: 434 NVVGAEIVRAVEEIIKFSEKRLNKVLSKEMYYAMAVHIYTAIERIKRNRKI--VNPQLNK 491

Query: 72  -ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYL 105
                S  +   +   +++ +   + +   E G+L
Sbjct: 492 IRTEYSEEFNIALDCLKIIERVLDVSMPIDEAGFL 526


>UniRef50_B9Y980 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y980_9FIRM
          Length = 274

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 24  QVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--AQSSHW 79
           Q+  ++E    L +  +    +   THM   L R + G++    +  + A+L       +
Sbjct: 180 QITAIIEKHFKLEINRDSFNYSRFATHMIYLLRRLKEGQKTTDDNRRIYAKLLEEYPDTY 239

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           Q V ++ + L +    +++  E  YL+ ++  L
Sbjct: 240 QCVDEIARFLEENIQSKLDENEMLYLILHVNRL 272


>UniRef50_B6FWC4 Putative uncharacterized protein n=2 Tax=Clostridium
           RepID=B6FWC4_9CLOT
          Length = 985

 Score = 40.7 bits (94), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E R  +   +  ++ +    M +V+ V++ +    V +    +  TH+  A+ R R  + 
Sbjct: 488 ENRKKIHIMSENLNPETINIMNKVITVIKNQYRF-VNNGLYMVLATHIEEAIKRVRNEKN 546

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           I     + + E   S  +     +  ++     + +   E GY+   +Y   M    
Sbjct: 547 IINPSLDNIKE-NMSEEYDLARYVVTIIENIAKISLPEDEIGYIAYYIYKFCMNEET 602


>UniRef50_C0ZH78 Probable transcriptional antiterminator n=2 Tax=Paenibacillaceae
           RepID=C0ZH78_BREBN
          Length = 285

 Score = 40.7 bits (94), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEE 102
            +TH+  A+ R R+ + I+   N LL  +       +Q   +L Q +     + V   E 
Sbjct: 215 LITHLRFAVERIRQQKFIK---NPLLDRVKTTMPEAYQLATELAQYISTRLEIAVPEDEV 271

Query: 103 GYLLANLYGLW 113
           GY+  +LY L 
Sbjct: 272 GYMALHLYRLL 282


>UniRef50_C7UQ76 Predicted protein n=3 Tax=Firmicutes RepID=C7UQ76_ENTFA
          Length = 285

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLD 66
            +    ++ + + M  +V++++     P+  E    T  M H+   + R    +     D
Sbjct: 166 VQNSQENEKVTEIMKDIVSIVQYHLGAPMNHESINYTRFMQHLQYFVQRILTNDTYSEND 225

Query: 67  NELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +EL  +++Q     + AV ++   ++  F   ++  E+ YL+ ++
Sbjct: 226 SELYQQISQLYPEAYGAVKKIELYVIGTFGKLISEDEKTYLMMHI 270


>UniRef50_B1YKV9 Transcriptional antiterminator, BglG n=2 Tax=Exiguobacterium
           RepID=B1YKV9_EXIS2
          Length = 285

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G +D++    M ++V+++ET     V          H+     R  +G E+    N  LA
Sbjct: 70  GHLDENFIALMNEIVSMIETRFGKRVDEHIHIGLTDHLTFTFKRLEQGMEVT---NPFLA 126

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           E        +    ++ + +  E    + P E G++  +++ 
Sbjct: 127 ETEALYPEEYALAEEIVEFISAEMNFYLPPAETGFIALHIHS 168


>UniRef50_C3RJ23 Predicted protein n=2 Tax=Bacteria RepID=C3RJ23_9MOLU
          Length = 613

 Score = 40.4 bits (93), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           E   +D DI + +  +V          +  +     + H+  A  R  + E    +D+E 
Sbjct: 157 EEYQMDFDILQRIRDIVISSIANADYVISDDVLDNLVAHLYIAYYRVMKKE-YANIDSEW 215

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           L E+ +   +     + +++ K  A+E    E  YL  +L G
Sbjct: 216 LEEIKEEKEYSLGCAIMELMNKIMAMEYRIEEVAYLTMHLCG 257


>UniRef50_Q5WKS9 Transcriptional antiterminator of lichenan operon n=1 Tax=Bacillus
           clausii KSM-K16 RepID=Q5WKS9_BACSK
          Length = 649

 Score = 40.0 bits (92), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELL 70
           V D +  K    +V  +E E  L + ++Q      M H+  A+ R R G  I    N +L
Sbjct: 308 VFDDEYYKLAKAIVEKVERELDLNIANDQELLVSLMLHLKPAINRYRYGMNIR---NPML 364

Query: 71  AELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           A++ Q  +  ++A V    V+  +  + ++  E GYL  ++
Sbjct: 365 ADIKQHYTLAFEAAVIGQAVIKDKLGISIDENEIGYLALHI 405



 Score = 38.0 bits (87), Expect = 0.086,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           L  L     + ++    +  ++     E  + +          H+  A  R   G  I  
Sbjct: 186 LTSLQLTAFMKEEQLADIWDILVTTMQENGVTLSDIAINNLFIHIVIAFKRIEAGHHIS- 244

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           L  + ++++     +    ++   L     +     E  Y+  +L G  + A  E
Sbjct: 245 LYRKDMSDICSQHEYYVAQKMIARLNTHLGVSFPEMEIAYIAIHLLGTRLVAENE 299


>UniRef50_C6IXJ3 Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA
           2 n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14
           RepID=C6IXJ3_9BACL
          Length = 696

 Score = 40.0 bits (92), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           ++    + +++   E +  +    E        +  +  R ++G  ++ L+ E  A L +
Sbjct: 189 EEELDSVYRIIVSTEQQIGMEWTDETILHLTLRIWLSANRMKQGRTVQ-LEEEEKAALRE 247

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +  ++A  Q+   L + F L V   E GYL   L
Sbjct: 248 TLQFKAATQIADELGERFDLRVPEDEIGYLAIYL 281


>UniRef50_D2MNU4 PRD domain protein n=1 Tax=Bulleidia extructa W1219
           RepID=D2MNU4_9FIRM
          Length = 275

 Score = 40.0 bits (92), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 19  CKGMMQVVNVLETECHLPVR--SEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS 76
            + M  ++ ++ET+  + ++   +     MTH+  A+ RS    EI+    E++ E    
Sbjct: 174 FQVMQDILGLIETDLGIDLKQYEDARQRLMTHIRFAIKRSLEHSEIQNDLQEVIQE-RYV 232

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
             +    ++  V+ +++ L +N  E  YL  +L  +
Sbjct: 233 RAFALAKKISTVVQEKYDLSLNEAELAYLSIHLENI 268


>UniRef50_D1ALQ6 Transcriptional antiterminator, BglG n=1 Tax=Sebaldella termitidis
           ATCC 33386 RepID=D1ALQ6_SEBTE
          Length = 281

 Score = 40.0 bits (92), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +      ++V + E +  + +          H+  A+ R   G+ ++ +   L  E+
Sbjct: 68  IPAEYIDITEKIVKLAEEKLQMKLSDTIYITLSDHIYFAVKRFGDGQSLKNI---LFWEI 124

Query: 74  AQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
             S    +    +  +++     L +   E G++  ++    +  N
Sbjct: 125 KSSYKDEYLIGQEALKIIKDTVDLSLPDDEAGFIALHIVNAELNEN 170


>UniRef50_B4F212 Transcriptional antiterminator n=14 Tax=Bacteria RepID=B4F212_PROMH
          Length = 284

 Score = 40.0 bits (92), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           L+LL     I  D  +    ++   + +  L  +       + H+ +++ R + G  I  
Sbjct: 60  LDLLSN---ITLDYVEIADNIIQYAKEKMTLDTQDSIYIALIDHIQASIERYKEGTFIR- 115

Query: 65  LDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
             N++L E+    S  +   +   +++   F + +   E G++  ++  +
Sbjct: 116 --NKILWEIKNFYSEEFDIGLYGLKLINDRFNISMPEDEAGFIALHIASI 163


>UniRef50_B9CU63 Transcriptional antiterminator, BglG family/DNA-binding protein n=3
           Tax=Staphylococcus RepID=B9CU63_STACP
          Length = 675

 Score = 40.0 bits (92), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 41/102 (40%), Gaps = 1/102 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           +  ++D D    + +++     +    +          H+  ++ R + GE +  L+ ++
Sbjct: 193 QQSLVDLDRIFKIERILMDYLGQLPYTLTESSYLTLTIHIVLSITRMQNGEYVS-LNKDI 251

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
              +  +   +   ++ + L +   +E N  E  ++  +L G
Sbjct: 252 YETVKDTFEHEVATEIAKRLEEIHNVEFNQAEITFITIHLRG 293


>UniRef50_C3RIK3 Predicted protein n=3 Tax=Bacteria RepID=C3RIK3_9MOLU
          Length = 226

 Score = 40.0 bits (92), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 6/97 (6%)

Query: 24  QVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVV 83
            ++     +  L +          H+  A++R +    I P+ N  +A   Q   +    
Sbjct: 20  NIIKNTADDYDLFLSENSINNLSVHLTIAIIRIKSNNYI-PMSNSQIASYKQDHSYPYAK 78

Query: 84  QLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
            L   L +EF ++    E       L  ++++ N+++
Sbjct: 79  MLCDRLAREFEIDFPEAEIS-----LVSMYLSKNQKL 110


>UniRef50_C5WHN0 Transcriptional antiterminator bglG n=1 Tax=Streptococcus
           dysgalactiae subsp. equisimilis GGS_124
           RepID=C5WHN0_STRDG
          Length = 661

 Score = 39.6 bits (91), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 34  HLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEF 93
            L +        + H+A A+ R ++G  I P++   L E            +   L    
Sbjct: 209 ELKLSDYAIQNLVIHLALAIQRFQKGFRIAPVE---LCECKYQKELLVARNIADRLANRL 265

Query: 94  ALE--VNPCEEGYLLANLYGLWMAANE 118
             E  +   E  Y+  +L    +A  +
Sbjct: 266 GQEELIPEEETAYIALHLISKSVAEQD 292


>UniRef50_A6LXA2 Transcriptional antiterminator, BglG n=15 Tax=Firmicutes
           RepID=A6LXA2_CLOB8
          Length = 279

 Score = 39.6 bits (91), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 20  KGMMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS- 76
             +  ++N+++    L +          +TH+     R  RG EIE  D  L   + +  
Sbjct: 178 NMIQNILNIVKFHYKLELDEYSLHYERFITHLKFFSQRIFRGNEIEDEDTSLSKIMREKY 237

Query: 77  -SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
              ++   ++ + +  EF  E+   E  YL  ++ 
Sbjct: 238 KEAYKCAEKIKKYVKSEFNSELTDEEMMYLAVHIN 272


>UniRef50_C0D9E2 Putative uncharacterized protein (Fragment) n=1 Tax=Clostridium
           asparagiforme DSM 15981 RepID=C0D9E2_9CLOT
          Length = 168

 Score = 39.6 bits (91), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/96 (12%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           + + + +++ +++   ++ +          +TH+   + R    E     D+ L  ++  
Sbjct: 64  VTETVQELIKMIQIHFNMSLDETSLSYQRLITHIRYFVRRLFVNEPAGGGDDLLFEQVKS 123

Query: 76  S--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +    +  V ++      +F  E+   E  YL+ ++
Sbjct: 124 AYPRSYTCVCKIRDYFRMKFHCEITEEEMTYLMLHI 159


>UniRef50_C0D1K5 Putative uncharacterized protein n=2 Tax=Clostridium
           RepID=C0D1K5_9CLOT
          Length = 273

 Score = 39.6 bits (91), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRG-EEIEPLD 66
           L     ID    +   +++   E             MA  H+A A+ R++ G E   P  
Sbjct: 60  LQAVNGIDPVYIEVTARIIEAAEGLLGPIRHDILIAMA-DHIALAVSRAKEGCELPNPFS 118

Query: 67  NELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            ++ A    S  ++A ++  +++ +E  +E++  E  Y+  +++G
Sbjct: 119 QDIRA--LFSQEYEAALKGRELIRQELGVEISEDEVSYITLHIHG 161


>UniRef50_B0K7D9 PTS system transcriptional activator n=12 Tax=Clostridia
           RepID=B0K7D9_THEP3
          Length = 979

 Score = 39.2 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 12/99 (12%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++ + I +   +   + +      +          H+++   R   G+ I  ++ +L  
Sbjct: 492 GIVGEKIVEAAEKAYEIAKKSFS-RLEENLFYSLAIHLSATYERILSGKPI--INPQLEN 548

Query: 72  ELAQ-SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            + +  + +     + + + +E  +E+   E G++   L
Sbjct: 549 IIREYPAEYSTAKIMAKQIERELGIELPEEEIGFIAMYL 587


>UniRef50_C7V767 Transcriptional antiterminator n=1 Tax=Enterococcus faecalis CH188
           RepID=C7V767_ENTFA
          Length = 283

 Score = 39.2 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 26  VNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVV 83
           +   E +             +TH+   + R   G+ I   D+ L  ++AQ          
Sbjct: 186 IVKYELKMDFDREDVHYQRFITHLKFFVERYYEGKMITENDSSLFEQIAQLYPKALTVAF 245

Query: 84  QLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            +   +      +V   E  YL  ++  L
Sbjct: 246 NVKDYIEIINDNKVTKEEVAYLTVHINRL 274


>UniRef50_D2EKZ6 Transcription antiterminator n=1 Tax=Pediococcus acidilactici 7_4
           RepID=D2EKZ6_PEDAC
          Length = 284

 Score = 39.2 bits (90), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMA--MTHMASALMRSRRGEEIEPLDNELLAE--- 72
               +  ++N+++   ++            +TH+   + R    E     D  +L E   
Sbjct: 175 DITVLRDLLNIIKYHFNINFDETSINYMRLVTHLQYFIDRLNCHELSTKTDVNVLYEQIR 234

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
                 ++AV ++ + + K F  E+ P E  YL+ ++ 
Sbjct: 235 TIYPEAFRAVQKIDKYISKSFGQEIFPDEYTYLMIHIN 272


>UniRef50_C5RLN3 Transcriptional antiterminator, BglG n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RLN3_CLOCL
          Length = 280

 Score = 39.2 bits (90), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMA--MTHMASALMRSRRGEEIEPLDNELLAELAQS--S 77
           + +++ V+E   ++ +  E  +    +TH+  A+ R  +   IE +   LL  +      
Sbjct: 184 IQEMITVIENNLNILIDRESISYMRLLTHLRFAIDRINKKLPIENI---LLDSIKTQLKD 240

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
            +   + +   + + F L +   E GY+  ++  + +  
Sbjct: 241 SYMVAIAVADYVKENFNLVMPEEEIGYIAVHIGNIKLRQ 279


>UniRef50_A8RDI0 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM
           3991 RepID=A8RDI0_9FIRM
          Length = 309

 Score = 39.2 bits (90), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA- 74
           ++  K    ++     E ++  + +       H+  A+ R   G E   L N +L E+  
Sbjct: 95  EEYFKLSQSIMEKAMEELNISFQDQTIIALTDHICFAVERYETGTE---LPNLVLDEIKT 151

Query: 75  -QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                ++  +   + + +E  +++   E GY+  ++  
Sbjct: 152 LYKEEFKIGLWSVKYINQELKIDLPIDEAGYIAMHIIN 189


>UniRef50_C8P1A7 SACPA operon antiterminator (SacT) n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P1A7_ERYRH
          Length = 289

 Score = 39.2 bits (90), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
            +    + I   +  +   +  E       +     +TH+  A  RS     +     ++
Sbjct: 187 NSAFYAQVITASVDFINKRIPEEFTQNSVGK--ARLITHLKFAFKRSEDNVTLTNPLIDI 244

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           L E      ++    L  +L +EF +++   E GY+  ++Y L
Sbjct: 245 LRE-RYCEAYEISEDLALMLDQEFNIQLPESEIGYIALHIYNL 286


>UniRef50_B1YFN4 Transcriptional antiterminator, BglG n=1 Tax=Exiguobacterium
           sibiricum 255-15 RepID=B1YFN4_EXIS2
          Length = 259

 Score = 38.8 bits (89), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELA--QSSHWQAVVQLHQVLLKEFALEVNPCEE 102
             THM   L R  +G+ +  +DN +L+ +    +  ++    +   L +E    V   E 
Sbjct: 180 FFTHMKLVLARIEQGQTLHDMDNVILSAVKTRYTDAFRCAENMAAWLEQELQTTVPQSEV 239

Query: 103 GYLLANL 109
           GY+  ++
Sbjct: 240 GYMALHV 246


>UniRef50_A2Q6K4 FruR protein n=5 Tax=Actinobacteridae RepID=A2Q6K4_BIFBR
          Length = 297

 Score = 38.8 bits (89), Expect = 0.052,   Method: Composition-based stats.
 Identities = 12/94 (12%), Positives = 38/94 (40%), Gaps = 8/94 (8%)

Query: 22  MMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
           + Q++ V+E+  ++ +          +TH+    +R  + E++      +++ +  S  +
Sbjct: 180 IQQLLAVIESTYNIKLDEHSVNVGRFITHLRYLFVRIHQHEQLSREPEAIVSSIMSS--Y 237

Query: 80  QAVVQLHQVLLKEFALE----VNPCEEGYLLANL 109
               +  +++     L     +   E  YL  ++
Sbjct: 238 AKASKCARLIASLIELRLDTTLTEDEVAYLTLHV 271


>UniRef50_A0RA54 Transcription antiterminator, BglG family n=75 Tax=Bacillus cereus
           group RepID=A0RA54_BACAH
          Length = 651

 Score = 38.8 bits (89), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +  V+        + +   +    + H+A AL R      ++ L+ E  +EL     +  
Sbjct: 203 IRSVILKYIEGGTIYLSDIEIDNLVIHIAIALKRCEDQHYMKGLNAE-QSELIIKKEYTI 261

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
             Q+   L KE  L     E  Y+  +L    + + +
Sbjct: 262 AKQIVGELEKELHLSFPKEEVLYVTMHLLSTAVTSKD 298


>UniRef50_A0ALC5 LicT protein n=38 Tax=Firmicutes RepID=A0ALC5_LISW6
          Length = 285

 Score = 38.8 bits (89), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 20  KGMMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAE--LAQ 75
           + +  +++++     + +       T  +TH+     R  R E ++  D+ L  +  +  
Sbjct: 178 QIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKY 237

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
              +    ++   LL     E+   E  YL  ++Y
Sbjct: 238 PEAFNCTKKIDAYLLNTHHTELTRDERVYLTIHIY 272


>UniRef50_P26212 SacPA operon antiterminator n=9 Tax=Bacillus RepID=SACT_BACSU
          Length = 276

 Score = 38.8 bits (89), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 4/95 (4%)

Query: 22  MMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
           + +++  ++   +  V          +TH+  A+ R    E +  +D E+L  + +   +
Sbjct: 177 IKEMIEKIKQYFNRKVDENSISYQRLVTHLRYAVSRLESNEALHRMDEEMLYFIQKKYSF 236

Query: 80  QA--VVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
                ++L + L  E+ L +   E GY+  ++  L
Sbjct: 237 AYQCALELAEFLKNEYQLHLPESEAGYITLHVQRL 271


>UniRef50_B1C8U8 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1C8U8_9FIRM
          Length = 664

 Score = 38.8 bits (89), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 17  DICKGMMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEE-IEPLDNELLAEL 73
           ++   +   +  +  +  + +  E       + H+ +  MR +  E  I P+  +L    
Sbjct: 299 ELHTTVATFLYKISEQLDISLYDEYSLFEFLIKHLNAMAMRIKNEELLINPIYEQLKE-- 356

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                ++AV +  +++   + L+++  E  Y++ ++  
Sbjct: 357 KYDYVFKAVKENIRLIEDFYKLKIDKNELSYIVMHICA 394


>UniRef50_D0KIH3 Transcriptional antiterminator, BglG n=13 Tax=Bacteria
           RepID=D0KIH3_PECWW
          Length = 313

 Score = 38.4 bits (88), Expect = 0.061,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 19  CKGMMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--A 74
            K +  + N+++   H+ +  E    +  +THM   + R      I   D+ +  ++   
Sbjct: 212 VKMLKDIFNIIQYNFHIVIDKESINYSRFLTHMQFFIQRLLENSLIHSNDDFIFDQVTKE 271

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
               ++    +   +     ++++  E  YL+ ++  +
Sbjct: 272 YPDAYKCSRLIKDYIHNLLNIDISNDEMLYLIIHIVRI 309



 Score = 38.0 bits (87), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           + ++    + ++++    + H  +  +     + H++ A+ R R+G  I+   N LL E+
Sbjct: 101 VREEYVHIVNKIIDDANRQLHGRLSEQVFFTLIDHISFAIERYRKGISIQ---NRLLYEV 157

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +     +    +    + ++  LE+   E G +  +L  
Sbjct: 158 KRFYPQEFAIASRALNDINQQMTLELPEEEAGNIAFHLVN 197


>UniRef50_B6FYA9 Putative uncharacterized protein n=3 Tax=Clostridium
           RepID=B6FYA9_9CLOT
          Length = 293

 Score = 38.4 bits (88), Expect = 0.064,   Method: Composition-based stats.
 Identities = 12/90 (13%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 25  VVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAEL---AQSSHW 79
           ++ ++     + +  E    +  +TH+     R   GE ++  D ++ AE+        +
Sbjct: 195 ILKIVTDTFDIQLDEESLHYSRLITHLKFLSQRIFMGEMLKDSD-DVFAEMIATKYPEEF 253

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +  +++   + +++   ++  E  YL  ++
Sbjct: 254 KCALKIRDYIEEQYNQRISNEELVYLAVHI 283


>UniRef50_C9ADA7 Transcription antiterminator n=1 Tax=Enterococcus casseliflavus
           EC20 RepID=C9ADA7_ENTCA
          Length = 669

 Score = 38.4 bits (88), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 31  TECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLL 90
            +  L +        + H+  A+ R + G EI+    E  A LAQ   +Q+ +++ + + 
Sbjct: 202 RKYFLKLSDFMIYTIVLHIGLAIKRLQAGFEIQLHPQE--ANLAQEVEYQSALEIVEKIR 259

Query: 91  KEFALEVNPCEEGYLLANLYGLWMAAN 117
           ++  + + P E  Y+  +L    ++  
Sbjct: 260 QQMGIVLPPEEAFYIAIHLKNKLVSET 286


>UniRef50_A8VWD6 Transcriptional antiterminator, BglG n=1 Tax=Bacillus
           selenitireducens MLS10 RepID=A8VWD6_9BACI
          Length = 287

 Score = 38.4 bits (88), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           +++    + + +  +E+E  + +          H+A AL R+  G     + N  L E  
Sbjct: 72  NEERLLAVHEAIARIESEMAIRLPDSALFALTQHLALALQRTTDG---TDIQNPFLLETK 128

Query: 75  --QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                 ++   Q    L+KE  L +   E G++  ++
Sbjct: 129 WLYRDSYRLAEQAVHFLMKETGLSLPEAEIGFVTLHI 165


>UniRef50_Q045X5 Beta-glucoside operon antiterminator n=6 Tax=Lactobacillus gasseri
           RepID=Q045X5_LACGA
          Length = 304

 Score = 38.4 bits (88), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE--EIEPLDN 67
           E  +I+ +    ++QV+        L   +++    M H+     R  +G+      +  
Sbjct: 191 EKNIINIEEMLHIVQVILDQHNIYRLASNNDEYERFMIHLQYLFRRLEQGKKFRSSDITK 250

Query: 68  ELLAEL--AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           ++  EL       +  V ++ + L ++F  E++  E+ YL+ ++  ++
Sbjct: 251 KVKDELISEYPESFVVVKEIDEQLKQDFQWEISDEEKLYLIVHIQRIY 298


>UniRef50_Q71VY8 Transcription antiterminator, BglG family n=14 Tax=Listeria
           RepID=Q71VY8_LISMF
          Length = 281

 Score = 38.4 bits (88), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 17  DICKGMMQVVNVLETECHLPVRSE--QGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
            I + + +++++++   ++    E       MTH+     R   GE I+ +D  L   + 
Sbjct: 176 HIMQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVK 235

Query: 75  QS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           +S  + ++ + ++   L K +   ++  E+ YL  ++  L 
Sbjct: 236 KSRGAIFECIDKIGVFLEKNYQFTMSHSEQFYLALHIERLL 276


>UniRef50_A7GGX3 Transcriptional antiterminator, BglG family n=12 Tax=Clostridium
           RepID=A7GGX3_CLOBL
          Length = 275

 Score = 38.4 bits (88), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 46  MTHMASALMRSRRGEEIEPLDNELLAELAQS--SHWQAVVQLHQVLLKEFALEVNPCEEG 103
           +TH+   + R +  + I+   NELL  + +   S +   +++  ++ K F +++   E G
Sbjct: 207 LTHLNFMIERVKEDKTIK---NELLDSIKEEMKSEFSIAIKVAMLIEKLFEIKIPEDEIG 263

Query: 104 YLLANL 109
           Y+  +L
Sbjct: 264 YIALHL 269


>UniRef50_A6M2B9 Sigma-54 factor, interaction domain-containing protein n=5
           Tax=Clostridia RepID=A6M2B9_CLOB8
          Length = 895

 Score = 38.4 bits (88), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +ID+D  K +  +V+ +  +  +   S   T    H+ + + R    + I   +   + +
Sbjct: 431 IIDEDTLKCIDSIVSHITRKLPVIFDSNLYTAFALHINTLINRINSDKIIINTNLNRIKD 490

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           L  S  +   +++ +++       +   E GYL   L 
Sbjct: 491 LYPSE-FAVALEIKEIIENTINKSIPIDEAGYLTLFLI 527


>UniRef50_P15401 Levansucrase and sucrase synthesis operon antiterminator n=2
           Tax=Bacillus subtilis group RepID=SACY_BACSU
          Length = 280

 Score = 38.4 bits (88), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 34  HLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS--SHWQAVVQLHQVLLK 91
           ++   +      +TH+  A+   + GE I  LD E++  + +     +   + +   + K
Sbjct: 193 NIVEDTISYERLVTHLRFAIQHIKAGESIYELDAEMIDIIKEKFKDAFLCALSIGTFVKK 252

Query: 92  EFALEVNPCEEGYLLANL 109
           E+  E    E  Y+  ++
Sbjct: 253 EYGFEFPEKELCYIAMHI 270


>UniRef50_Q0TV06 Transcription antiterminator n=9 Tax=Clostridium perfringens
           RepID=Q0TV06_CLOP1
          Length = 282

 Score = 38.0 bits (87), Expect = 0.080,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELA--QSSHWQAVVQLHQVLLKEFALEVNPCEE 102
            + H++ A+ R ++GE    L N  L E+       ++A  ++ + L     + +   E 
Sbjct: 105 LIDHISFAIERMKKGEI---LRNPFLVEIETLYPKEFEAATKMVKKLEDFTGVSIVDDEI 161

Query: 103 GYLLANLYG 111
           G++  +++ 
Sbjct: 162 GFIAMHIHS 170



 Score = 38.0 bits (87), Expect = 0.089,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 34  HLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA--ELAQSSHWQAVVQLHQVLLK 91
            +   S      ++H+  A+ R      ++   NELL+  +L     ++   ++ + + +
Sbjct: 201 EVDRTSLSYARFISHLRFAIERLINNTPVK---NELLSIIKLKYPESFKVAEEIGKAINE 257

Query: 92  EFALEVNPCEEGYLLANL 109
           +F+LEV   E GYL  ++
Sbjct: 258 DFSLEVAEDEIGYLALHV 275


>UniRef50_B5F2K0 Sigma-54 factor, interaction domain-containing protein n=1
           Tax=Salmonella enterica subsp. enterica serovar Agona
           str. SL483 RepID=B5F2K0_SALA4
          Length = 906

 Score = 38.0 bits (87), Expect = 0.080,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI--EPLDNELLAELAQ 75
           I   +M  +  L+ + H           + H   A+ RS R E I    L+ E       
Sbjct: 813 IVPIVMLFLQQLKEQRHFDEFGSNLLNMIVHTCVAIERSVRNETITYNKLNREAY---LM 869

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLL 106
           S  ++   + +++L  +  +++N  E  +++
Sbjct: 870 SELFKIYQKANEILEDKLDVKLNDDELLFII 900


>UniRef50_A0AGN0 Complete genome n=21 Tax=Firmicutes RepID=A0AGN0_LISW6
          Length = 938

 Score = 38.0 bits (87), Expect = 0.085,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 4/113 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  R N+L    +++++I      +   +E +    +          H+ S + R    +
Sbjct: 462 IHNRENILK---IVNEEILNFAEGIEQRIEHQLGKKLNERFLLAFSLHLTSFIKRIESNK 518

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            ++  + E +    Q   ++   ++   +   F + V   E  YL   +  L 
Sbjct: 519 PLKYTNIENVVN-DQPEAYELSREIKDDIEATFHIRVPNMEVMYLTLLISSLL 570


>UniRef50_B3DQG5 Beta-glucoside operon antiterminator n=24 Tax=Actinobacteridae
           RepID=B3DQG5_BIFLD
          Length = 279

 Score = 38.0 bits (87), Expect = 0.087,   Method: Composition-based stats.
 Identities = 11/94 (11%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 22  MMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
           + Q++++++    + +   S      +TH+    +R  + +++      ++  + +S  +
Sbjct: 180 IQQLLDIIDHSYGITLDRSSVNVGRFITHLRYLFVRIHQHQQLTDEPAPVMKVIRES--Y 237

Query: 80  QAVVQLHQVLLKEFALE----VNPCEEGYLLANL 109
            A ++  + +     L     ++  E  YL  ++
Sbjct: 238 PAALRCARTIASLLELRLDTDISDDETAYLAMHV 271


>UniRef50_C8P2Y2 Transcription antiterminator LicT n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P2Y2_ERYRH
          Length = 282

 Score = 38.0 bits (87), Expect = 0.092,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             I  D  +    +V    +     +          H+  A++RS+   E+  L  E + 
Sbjct: 62  NKIPVDYFEATRAIVEYAHSVLDTSLSDTINVALTDHIYYAVLRSKDDVELPGLFTEEIK 121

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +     ++        + K F + +   E GYL+ ++  
Sbjct: 122 -MYYPDEFKVGAWALNYINKRFEVTLPQDEIGYLVIHIVN 160


>UniRef50_B6GAF6 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAF6_9ACTN
          Length = 287

 Score = 38.0 bits (87), Expect = 0.100,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS 76
           +       +++  E   H+ ++ +       H+  A+ R+R GE    L   + +E+   
Sbjct: 79  EFFNISKSIMDEAEKRLHIVLKDQVLIALTDHIVFAVERARNGEGFSNL---MFSEVRGL 135

Query: 77  --SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
               ++  +    ++ +   + +   E  ++  ++  
Sbjct: 136 YRREYEIGLWGIHLVEEALGIRLPEDEASFIALHILN 172


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P45551 Uncharacterized protein yhfY n=52 Tax=Enterobact...   116   2e-25
UniRef50_A1JKN9 Putative uncharacterized protein n=5 Tax=Yersini...   108   4e-23
UniRef50_A8GJ09 PRD domain protein n=3 Tax=Enterobacteriaceae Re...   108   7e-23
UniRef50_Q7N5F7 Similar to unknown protein YhfY of Escherichia c...   106   2e-22
UniRef50_C4U196 PRD domain protein n=2 Tax=Yersinia RepID=C4U196...   106   3e-22
UniRef50_C9RTD1 PTS modulated transcriptional regulator, MtlR fa...   102   4e-21
UniRef50_Q0I1W6 Putative uncharacterized protein n=3 Tax=Pasteur...   101   6e-21
UniRef50_C0Z8I8 Transcriptional regulator n=1 Tax=Brevibacillus ...   101   6e-21
UniRef50_UPI0001794F42 hypothetical protein CLOSPO_02901 n=1 Tax...    98   7e-20
UniRef50_B7GJR6 Transcriptional antiterminator of mannitol metab...    98   8e-20
UniRef50_Q8EN85 Transcriptional antiterminator (BglG family) n=1...    98   9e-20
UniRef50_A6TVY0 Transcriptional antiterminator, BglG n=1 Tax=Alk...    98   1e-19
UniRef50_Q67S02 Putative transcriptional antiterminator n=1 Tax=...    98   1e-19
UniRef50_B0K3R4 Transcriptional antiterminator, BglG n=12 Tax=Th...    97   1e-19
UniRef50_C1I3F9 Predicted protein n=1 Tax=Clostridium sp. 7_2_43...    96   3e-19
UniRef50_P96574 Putative phosphotransferase enzyme IIA component...    96   3e-19
UniRef50_C6AQX2 S-ribosylhomocysteinase n=4 Tax=Pasteurellaceae ...    95   7e-19
UniRef50_C3WF22 Predicted protein n=1 Tax=Fusobacterium mortifer...    95   8e-19
UniRef50_A7ZA83 LicR n=3 Tax=Bacillus RepID=A7ZA83_BACA2               94   1e-18
UniRef50_B0A809 Putative uncharacterized protein n=1 Tax=Clostri...    94   1e-18
UniRef50_Q9K679 Transcriptional antiterminator n=1 Tax=Bacillus ...    94   1e-18
UniRef50_C1I943 BglG family transcriptional antiterminator n=1 T...    94   2e-18
UniRef50_C5D9V5 PTS modulated transcriptional regulator, MtlR fa...    93   2e-18
UniRef50_UPI0001C35378 PRD domain-containing protein n=1 Tax=Clo...    93   3e-18
UniRef50_C9KJT4 Transcriptional antiterminator, BglG family n=1 ...    92   5e-18
UniRef50_B0K1N4 PRD domain protein n=3 Tax=Thermoanaerobacter Re...    92   7e-18
UniRef50_Q5WK94 Putative uncharacterized protein n=1 Tax=Bacillu...    91   7e-18
UniRef50_B0MAI9 Putative uncharacterized protein n=1 Tax=Anaeros...    91   8e-18
UniRef50_C0D786 Putative uncharacterized protein n=1 Tax=Clostri...    91   9e-18
UniRef50_P46321 Putative phosphotransferase enzyme IIA component...    91   9e-18
UniRef50_C6P8P3 PRD domain protein n=1 Tax=Thermoanaerobacterium...    91   1e-17
UniRef50_B1C5P5 Putative uncharacterized protein n=1 Tax=Anaerof...    91   1e-17
UniRef50_B8CZR0 Transcriptional antiterminator, BglG n=1 Tax=Hal...    89   3e-17
UniRef50_Q5WDU8 BglG family transcriptional antiterminator n=1 T...    89   5e-17
UniRef50_C9XLB5 Putative transcription antiterminator n=8 Tax=Cl...    88   6e-17
UniRef50_B9CM75 Putative uncharacterized protein n=1 Tax=Atopobi...    88   7e-17
UniRef50_B6FZM9 Putative uncharacterized protein n=1 Tax=Clostri...    88   7e-17
UniRef50_B9Y6L8 Putative uncharacterized protein n=1 Tax=Holdema...    88   1e-16
UniRef50_C1PAW0 PTS modulated transcriptional regulator, MtlR fa...    88   1e-16
UniRef50_A6D1D8 Putative uncharacterized protein n=1 Tax=Vibrio ...    87   1e-16
UniRef50_Q723N6 PRD/PTS system IIA 2 domain protein n=24 Tax=Lis...    87   2e-16
UniRef50_A8FIW8 Transcriptional regulator n=2 Tax=Bacillus pumil...    87   2e-16
UniRef50_B0KCF7 Transcriptional antiterminator, BglG n=8 Tax=The...    87   2e-16
UniRef50_C1PBK9 PTS modulated transcriptional regulator, MtlR fa...    86   3e-16
UniRef50_B0K247 Transcriptional antiterminator, BglG n=13 Tax=Cl...    85   7e-16
UniRef50_C4V0J7 MtlR transcriptional regulator n=1 Tax=Selenomon...    84   9e-16
UniRef50_D0GNT1 PRD domain-containing protein n=1 Tax=Leptotrich...    84   2e-15
UniRef50_Q8EMS7 Transcriptional antiterminator of lichenan opero...    83   2e-15
UniRef50_P44003 Uncharacterized protein HI0487 n=15 Tax=Haemophi...    83   2e-15
UniRef50_D1ALX8 PRD domain protein n=1 Tax=Sebaldella termitidis...    83   3e-15
UniRef50_B6GBJ5 Putative uncharacterized protein n=1 Tax=Collins...    83   4e-15
UniRef50_Q67SK7 BglG family transcription antiterminator n=1 Tax...    82   4e-15
UniRef50_A6LX09 Transcriptional antiterminator, BglG n=11 Tax=Cl...    82   6e-15
UniRef50_Q9KF98 BH0587 protein n=1 Tax=Bacillus halodurans RepID...    81   9e-15
UniRef50_C6VLU3 Transcription regulator, mannitol operon n=2 Tax...    81   1e-14
UniRef50_C7T9M3 Conserved protein n=2 Tax=Lactobacillus RepID=C7...    81   1e-14
UniRef50_Q6LNG7 Putative uncharacterized protein PM1058 n=1 Tax=...    80   2e-14
UniRef50_C7TNE9 PTS system, fructose-specific IIA component n=1 ...    80   2e-14
UniRef50_UPI0001C42D0A transcriptional antiterminator n=1 Tax=Ba...    79   3e-14
UniRef50_C9A355 Putative uncharacterized protein n=1 Tax=Enteroc...    79   3e-14
UniRef50_Q184K6 Putative transcriptional antiterminator n=6 Tax=...    79   4e-14
UniRef50_A8U9C7 Putative uncharacterized protein n=1 Tax=Carnoba...    78   7e-14
UniRef50_C0D455 Putative uncharacterized protein n=1 Tax=Clostri...    78   1e-13
UniRef50_B6G9P7 Putative uncharacterized protein n=1 Tax=Collins...    78   1e-13
UniRef50_UPI000178876C transcriptional antiterminator, BglG n=1 ...    76   5e-13
UniRef50_Q65MQ9 Putative uncharacterized protein n=1 Tax=Bacillu...    75   7e-13
UniRef50_A8W0Y8 Transcriptional antiterminator, BglG (Fragment) ...    73   2e-12
UniRef50_C1QBY4 PTS system IIA component; transcriptional antite...    73   3e-12
UniRef50_Q040S8 Beta-glucoside operon antiterminator n=12 Tax=La...    73   3e-12
UniRef50_Q03GK2 Transcriptional antiterminator n=1 Tax=Pediococc...    69   5e-11
UniRef50_C8NIB7 Putative uncharacterized protein n=1 Tax=Granuli...    69   5e-11
UniRef50_D1WYJ0 Transcriptional antiterminator, BglG n=3 Tax=Str...    61   1e-08
UniRef50_B0MGK7 Putative uncharacterized protein n=2 Tax=Clostri...    59   4e-08

Sequences not found previously or not previously below threshold:

UniRef50_Q5WKS9 Transcriptional antiterminator of lichenan opero...    74   1e-12
UniRef50_B9CU63 Transcriptional antiterminator, BglG family/DNA-...    74   2e-12
UniRef50_C6PFK2 PTS modulated transcriptional regulator, MtlR fa...    73   4e-12
UniRef50_Q8NVE5 MW2083 protein n=56 Tax=Staphylococcus RepID=Q8N...    72   6e-12
UniRef50_B6G824 Putative uncharacterized protein n=1 Tax=Collins...    71   9e-12
UniRef50_C4G9M5 Putative uncharacterized protein n=1 Tax=Shuttle...    71   1e-11
UniRef50_A0AMB6 Complete genome n=18 Tax=Listeria RepID=A0AMB6_L...    71   1e-11
UniRef50_A6NQL9 Putative uncharacterized protein n=1 Tax=Bactero...    69   4e-11
UniRef50_A0RA54 Transcription antiterminator, BglG family n=75 T...    68   6e-11
UniRef50_C7REJ5 PTS modulated transcriptional regulator, MtlR fa...    68   7e-11
UniRef50_B4U3Q3 BglG family transcription antiterminator, PTS sy...    65   6e-10
UniRef50_Q63A16 Possible transcriptional antiterminator, bglG fa...    65   6e-10
UniRef50_B9Y4E8 Putative uncharacterized protein n=1 Tax=Holdema...    65   7e-10
UniRef50_C5EFS9 Predicted protein n=1 Tax=Clostridiales bacteriu...    65   7e-10
UniRef50_C6CTN7 Transcriptional antiterminator, BglG n=1 Tax=Pae...    65   8e-10
UniRef50_C7IC29 Transcriptional antiterminator, BglG n=1 Tax=Clo...    64   1e-09
UniRef50_Q1JGE0 Transcription antiterminator, BglG family / PTS ...    64   1e-09
UniRef50_C5WHN0 Transcriptional antiterminator bglG n=1 Tax=Stre...    64   1e-09
UniRef50_A8U731 Transcriptional regulator n=1 Tax=Carnobacterium...    64   1e-09
UniRef50_A6M2G4 Sigma-54 factor, interaction domain-containing p...    64   1e-09
UniRef50_A0Q2H7 SACPA operon antiterminator n=3 Tax=Clostridium ...    64   1e-09
UniRef50_C0CV60 Putative uncharacterized protein n=1 Tax=Clostri...    64   2e-09
UniRef50_C2C483 Possible MtlR transcriptional regulator n=1 Tax=...    64   2e-09
UniRef50_A8AYJ7 Transcription antiterminator BglG family n=3 Tax...    64   2e-09
UniRef50_A5IPR4 Transcriptional antiterminator, BglG n=52 Tax=St...    63   2e-09
UniRef50_C2H7N3 BglG family transcriptional antiterminator n=12 ...    63   2e-09
UniRef50_C4FAP7 Putative uncharacterized protein n=1 Tax=Collins...    63   3e-09
UniRef50_B0KCX3 PTS system transcriptional activator n=13 Tax=Cl...    63   3e-09
UniRef50_O31644 Putative phosphotransferase enzyme IIA component...    63   3e-09
UniRef50_D1B7A6 PTS modulated transcriptional regulator, MtlR fa...    63   4e-09
UniRef50_A4EAF5 Putative uncharacterized protein n=1 Tax=Collins...    63   4e-09
UniRef50_A5KQG9 Putative uncharacterized protein n=1 Tax=Ruminoc...    63   4e-09
UniRef50_C6DCM5 Transcriptional antiterminator, BglG n=7 Tax=Ent...    62   5e-09
UniRef50_A8SBZ8 Putative uncharacterized protein n=1 Tax=Faecali...    62   6e-09
UniRef50_C6IY31 Transcriptional antiterminator n=1 Tax=Paenibaci...    62   6e-09
UniRef50_A4ILQ1 Transcription antiterminator n=10 Tax=Bacillacea...    61   8e-09
UniRef50_C0ZH78 Probable transcriptional antiterminator n=2 Tax=...    61   8e-09
UniRef50_C6IXJ3 Phosphoenolpyruvate-dependent sugar phosphotrans...    61   9e-09
UniRef50_C2BXN0 Transcriptional antiterminator n=2 Tax=Bacilli R...    61   9e-09
UniRef50_C5DAC1 PTS modulated transcriptional regulator, MtlR fa...    61   9e-09
UniRef50_D1ALQ6 Transcriptional antiterminator, BglG n=1 Tax=Seb...    61   1e-08
UniRef50_A8VWD6 Transcriptional antiterminator, BglG n=1 Tax=Bac...    61   1e-08
UniRef50_C9XN38 Putative transcription antiterminator n=6 Tax=Cl...    61   1e-08
UniRef50_C2HCM5 Transcriptional antiterminator n=17 Tax=Enteroco...    61   1e-08
UniRef50_C5F792 Putative uncharacterized protein n=1 Tax=Lactoba...    61   1e-08
UniRef50_A8F9J0 Transcriptional antiterminator n=4 Tax=Bacillus ...    61   1e-08
UniRef50_A8RDI0 Putative uncharacterized protein n=1 Tax=Eubacte...    61   2e-08
UniRef50_B6GAF6 Putative uncharacterized protein n=1 Tax=Collins...    60   2e-08
UniRef50_Q0TV06 Transcription antiterminator n=9 Tax=Clostridium...    60   2e-08
UniRef50_C0QXV4 Transcriptional antiterminator , BglB n=1 Tax=Br...    60   2e-08
UniRef50_A4W4E8 Transcriptional antiterminator n=1 Tax=Streptoco...    60   2e-08
UniRef50_C3RIK3 Predicted protein n=3 Tax=Bacteria RepID=C3RIK3_...    60   2e-08
UniRef50_C3RJ23 Predicted protein n=2 Tax=Bacteria RepID=C3RJ23_...    60   2e-08
UniRef50_C2BGB6 BglG family transcriptional antiterminator n=2 T...    60   2e-08
UniRef50_B1IKY9 Transcriptional antiterminator, BglG family n=12...    60   3e-08
UniRef50_B6FWC4 Putative uncharacterized protein n=2 Tax=Clostri...    60   3e-08
UniRef50_P26212 SacPA operon antiterminator n=9 Tax=Bacillus Rep...    60   3e-08
UniRef50_A4J1C8 Transcriptional antiterminator, BglG n=2 Tax=Clo...    60   3e-08
UniRef50_B4F212 Transcriptional antiterminator n=14 Tax=Bacteria...    59   3e-08
UniRef50_B0K352 Transcriptional antiterminator, BglG n=9 Tax=The...    59   3e-08
UniRef50_Q2BFG3 ManR n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B...    59   4e-08
UniRef50_A6M213 Transcriptional antiterminator, BglG n=8 Tax=Clo...    59   4e-08
UniRef50_Q184U4 Putative transcription antiterminator n=5 Tax=Cl...    59   4e-08
UniRef50_B1YKV9 Transcriptional antiterminator, BglG n=2 Tax=Exi...    59   4e-08
UniRef50_A6TMP5 Transcriptional antiterminator, BglG n=1 Tax=Alk...    59   4e-08
UniRef50_C0D1K5 Putative uncharacterized protein n=2 Tax=Clostri...    59   5e-08
UniRef50_O07655 Antiterminator homolog n=16 Tax=Enterobacteriace...    59   6e-08
UniRef50_Q03E27 Transcriptional regulator with AAA-type ATPase d...    59   6e-08
UniRef50_B7GIF9 Transcriptional antiterminator n=3 Tax=Bacillale...    58   7e-08
UniRef50_P15401 Levansucrase and sucrase synthesis operon antite...    58   8e-08
UniRef50_B0K7D9 PTS system transcriptional activator n=12 Tax=Cl...    58   9e-08
UniRef50_C5RLN3 Transcriptional antiterminator, BglG n=1 Tax=Clo...    58   9e-08
UniRef50_C7UQ76 Predicted protein n=3 Tax=Firmicutes RepID=C7UQ7...    58   9e-08
UniRef50_P26211 Beta-glucoside operon antiterminator n=72 Tax=Ba...    58   1e-07
UniRef50_A6VMZ3 Transcriptional antiterminator, BglG n=1 Tax=Act...    58   1e-07
UniRef50_C9ADA7 Transcription antiterminator n=1 Tax=Enterococcu...    58   1e-07
UniRef50_O31691 PtsGHI operon antiterminator n=87 Tax=Bacillacea...    58   1e-07
UniRef50_D2EH42 Transcription antiterminator licT n=1 Tax=Pedioc...    58   1e-07
UniRef50_UPI0001692E24 transcriptional regulator n=1 Tax=Paeniba...    58   1e-07
UniRef50_UPI0001788D94 transcriptional antiterminator, BglG n=1 ...    57   1e-07
UniRef50_B0PCB1 Putative uncharacterized protein n=1 Tax=Anaerot...    57   2e-07
UniRef50_C8P1J6 Putative uncharacterized protein n=1 Tax=Erysipe...    57   2e-07
UniRef50_B1CBZ7 Putative uncharacterized protein n=1 Tax=Anaerof...    57   2e-07
UniRef50_C6PVA3 PTS system transcriptional activator n=1 Tax=Clo...    57   2e-07
UniRef50_C0CT65 Putative uncharacterized protein n=1 Tax=Clostri...    57   2e-07
UniRef50_A7GGX3 Transcriptional antiterminator, BglG family n=12...    57   2e-07
UniRef50_C6PDR4 PTS system transcriptional activator n=1 Tax=The...    57   2e-07
UniRef50_D1B6P9 Transcriptional antiterminator, BglG n=1 Tax=The...    57   2e-07
UniRef50_A6LWC3 Sigma-54 factor, interaction domain-containing p...    56   3e-07
UniRef50_UPI0001C4223B transcription antiterminator GlcT n=1 Tax...    56   3e-07
UniRef50_B9Y2S2 Putative uncharacterized protein n=1 Tax=Holdema...    56   3e-07
UniRef50_Q8XP92 Probable transcription antiterminator n=1 Tax=Cl...    56   3e-07
UniRef50_D0KIH3 Transcriptional antiterminator, BglG n=13 Tax=Ba...    56   4e-07
UniRef50_B2ISN0 PTS system, IIB component n=15 Tax=Streptococcus...    56   4e-07
UniRef50_A1JND6 Beta-glucoside operon antiterminator n=3 Tax=Ent...    56   4e-07
UniRef50_C6PFM7 PTS system transcriptional activator n=1 Tax=The...    56   5e-07
UniRef50_C6QUF4 PTS modulated transcriptional regulator, MtlR fa...    56   5e-07
UniRef50_C2Q5B4 Putative uncharacterized protein n=2 Tax=Bacillu...    55   6e-07
UniRef50_Q5KYD3 Hypothetical conserved protein n=1 Tax=Geobacill...    55   6e-07
UniRef50_P39805 Transcription antiterminator licT n=25 Tax=Firmi...    55   6e-07
UniRef50_A4ED34 Putative uncharacterized protein n=1 Tax=Collins...    55   7e-07
UniRef50_A6M2B9 Sigma-54 factor, interaction domain-containing p...    55   7e-07
UniRef50_C9RTV4 PTS modulated transcriptional regulator, MtlR fa...    55   7e-07
UniRef50_UPI0001694F32 transcriptional antiterminator, BglG fami...    55   7e-07
UniRef50_B9Y9G6 Putative uncharacterized protein (Fragment) n=1 ...    55   8e-07
UniRef50_Q03XR5 Beta-glucoside operon antiterminator n=2 Tax=Leu...    55   8e-07
UniRef50_UPI000196B732 hypothetical protein CATMIT_00744 n=1 Tax...    55   9e-07
UniRef50_B0NY82 Putative uncharacterized protein n=1 Tax=Clostri...    54   1e-06
UniRef50_B9Y3A0 Putative uncharacterized protein n=1 Tax=Holdema...    54   1e-06
UniRef50_C6Q8D8 PTS system transcriptional activator n=1 Tax=The...    54   1e-06
UniRef50_B9Y4W4 Putative uncharacterized protein n=1 Tax=Holdema...    54   1e-06
UniRef50_B9EBW1 Putative uncharacterized protein n=1 Tax=Macroco...    54   1e-06
UniRef50_C2HQQ4 Beta-glucoside transcriptional antiterminator n=...    54   1e-06
UniRef50_B0N6K6 Putative uncharacterized protein n=3 Tax=Bacteri...    54   1e-06
UniRef50_A6M218 Sigma-54 factor, interaction domain-containing p...    54   1e-06
UniRef50_C5EIH6 Transcription antiterminator n=1 Tax=Clostridial...    54   2e-06
UniRef50_D1AMM5 Transcriptional antiterminator, BglG n=1 Tax=Seb...    54   2e-06
UniRef50_C5EMV1 Transcriptional antiterminator n=1 Tax=Clostridi...    54   2e-06
UniRef50_C8WQV6 Transcriptional antiterminator, BglG n=2 Tax=Ali...    54   2e-06
UniRef50_Q184L9 Transcription antiterminator n=3 Tax=Clostridium...    54   2e-06
UniRef50_B9DU03 Transcriptional regulator (Antiterminator) n=2 T...    54   2e-06
UniRef50_C3RIA8 Transcription antiterminator n=1 Tax=Mollicutes ...    54   2e-06
UniRef50_D1PSC1 Transcription antiterminator LicT n=1 Tax=Subdol...    53   2e-06
UniRef50_D1ANJ9 Transcriptional antiterminator, BglG n=1 Tax=Seb...    53   2e-06
UniRef50_D0R5U6 Transcription antiterminator n=1 Tax=Lactobacill...    53   2e-06
UniRef50_A8FJ69 BglG family transcriptional antiterminator n=6 T...    53   2e-06
UniRef50_B0N368 Putative uncharacterized protein n=1 Tax=Clostri...    53   3e-06
UniRef50_C2GFH3 Transcriptional antiterminator n=2 Tax=Corynebac...    53   3e-06
UniRef50_C9XQT4 Transcription antiterminator n=12 Tax=Firmicutes...    53   3e-06
UniRef50_A6LXA2 Transcriptional antiterminator, BglG n=15 Tax=Fi...    53   3e-06
UniRef50_D2C0F0 Transcriptional antiterminator, BglG n=2 Tax=Ent...    53   3e-06
UniRef50_A8F9J6 Bifunctional PTS family fructose/mannitol (Fru) ...    53   3e-06
UniRef50_C4V3X4 Possible N(Pi)-phosphohistidine--sugar phosphotr...    53   3e-06
UniRef50_C9B3C8 Transcriptional antiterminator bglG/CAT RNA-bind...    53   4e-06
UniRef50_P24401 Transcription antiterminator lacT n=14 Tax=Lacto...    53   4e-06
UniRef50_B1YFN4 Transcriptional antiterminator, BglG n=1 Tax=Exi...    53   4e-06
UniRef50_A0AGN0 Complete genome n=21 Tax=Firmicutes RepID=A0AGN0...    53   4e-06
UniRef50_C9AZS3 Beta-glucoside operon antiterminator n=2 Tax=Ent...    53   4e-06
UniRef50_C9A391 Transcriptional antiterminator n=1 Tax=Enterococ...    53   4e-06
UniRef50_C8P2Y2 Transcription antiterminator LicT n=1 Tax=Erysip...    53   4e-06
UniRef50_A6M341 Sigma-54 factor, interaction domain-containing p...    53   4e-06
UniRef50_B0MFG1 Putative uncharacterized protein n=1 Tax=Anaeros...    52   5e-06
UniRef50_Q9L8G7 ScrT n=3 Tax=Clostridium RepID=Q9L8G7_CLOAB            52   5e-06
UniRef50_C5WHP5 Putative uncharacterized protein n=3 Tax=Strepto...    52   5e-06
UniRef50_C7TGE9 Transcriptional antiterminator, BglG family n=2 ...    52   5e-06
UniRef50_C9KQ73 Putative transcription antiterminator GlcT n=1 T...    52   6e-06
UniRef50_Q184X6 Transcription antiterminator n=2 Tax=Clostridium...    52   6e-06
UniRef50_A6LPX9 Sigma-54 factor, interaction domain-containing p...    52   6e-06
UniRef50_A4IML7 Regulatory protein n=10 Tax=Firmicutes RepID=A4I...    52   6e-06
UniRef50_Q67LZ9 Putative PTS system, IIA component n=1 Tax=Symbi...    52   6e-06
UniRef50_D2EKZ6 Transcription antiterminator n=1 Tax=Pediococcus...    52   6e-06
UniRef50_O33618 GlcA/glcB genes antiterminator n=7 Tax=Staphyloc...    52   6e-06
UniRef50_C9A770 Transcriptional antiterminator bglG/CAT RNA-bind...    52   6e-06
UniRef50_C0ETM8 Putative uncharacterized protein n=1 Tax=Eubacte...    52   7e-06
UniRef50_Q184X1 Transcription antiterminator n=6 Tax=Clostridium...    52   7e-06
UniRef50_B0N7R7 Putative uncharacterized protein n=1 Tax=Clostri...    52   7e-06
UniRef50_B6GB96 Putative uncharacterized protein n=1 Tax=Collins...    52   7e-06
UniRef50_Q03XN7 Transcriptional antiterminator n=1 Tax=Leuconost...    52   8e-06
UniRef50_A7B640 Putative uncharacterized protein n=1 Tax=Ruminoc...    51   8e-06
UniRef50_C8P1A7 SACPA operon antiterminator (SacT) n=1 Tax=Erysi...    51   8e-06
UniRef50_UPI000196B5EC hypothetical protein CATMIT_00421 n=1 Tax...    51   8e-06
UniRef50_C3RR39 Predicted protein n=2 Tax=Bacteria RepID=C3RR39_...    51   9e-06
UniRef50_C0Z8L8 Transcriptional regulatory protein n=1 Tax=Brevi...    51   9e-06
UniRef50_Q185K2 Putative sigma-54 interacting transcription anti...    51   9e-06
UniRef50_Q9KG92 BH0220 protein n=2 Tax=Bacillales RepID=Q9KG92_B...    51   9e-06
UniRef50_C9BK18 Transcriptional antiterminator bglG/CAT RNA-bind...    51   1e-05
UniRef50_B1MZ35 Transcriptional antiterminator bglG:CAT RNA-bind...    51   1e-05
UniRef50_C4L0D3 Transcriptional antiterminator, BglG n=10 Tax=Ba...    51   1e-05
UniRef50_C6CKX7 Transcriptional antiterminator, BglG n=1 Tax=Dic...    51   1e-05
UniRef50_B1CAJ2 Putative uncharacterized protein n=1 Tax=Anaerof...    51   1e-05
UniRef50_B0MAW7 Putative uncharacterized protein n=1 Tax=Anaeros...    51   1e-05
UniRef50_Q18DC6 Beta-glucoside bgl operon transcription antiterm...    51   1e-05
UniRef50_C5ENS0 Transcription antiterminator licT n=1 Tax=Clostr...    51   1e-05
UniRef50_C3RIJ4 Transcription antiterminator n=4 Tax=Bacteria Re...    51   1e-05
UniRef50_B6FR13 Putative uncharacterized protein n=3 Tax=Clostri...    51   1e-05
UniRef50_B0MED2 Putative uncharacterized protein n=1 Tax=Anaeros...    51   1e-05
UniRef50_B3DQG5 Beta-glucoside operon antiterminator n=24 Tax=Ac...    51   1e-05

>UniRef50_P45551 Uncharacterized protein yhfY n=52 Tax=Enterobacteriaceae
           RepID=YHFY_ECOLI
          Length = 120

 Score =  116 bits (291), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE
Sbjct: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV
Sbjct: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120


>UniRef50_A1JKN9 Putative uncharacterized protein n=5 Tax=Yersinia
           RepID=A1JKN9_YERE8
          Length = 126

 Score =  108 bits (271), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/120 (50%), Positives = 88/120 (73%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RLN+LC++GVID+DI +G+ QV+N LE    LPV  EQG MA+THMA+ALMR+RRGE
Sbjct: 5   IDARLNILCQSGVIDQDIGQGLDQVINRLEHFWQLPVHGEQGVMAITHMANALMRTRRGE 64

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           EI  L+  +LAE+ QS     + +++Q LL  F+L+    E GYLLANLYGL+++++  +
Sbjct: 65  EIAALNPAILAEIVQSKEIHYIREINQDLLAYFSLKPAENEIGYLLANLYGLYLSSDTPL 124


>UniRef50_A8GJ09 PRD domain protein n=3 Tax=Enterobacteriaceae RepID=A8GJ09_SERP5
          Length = 122

 Score =  108 bits (270), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 53/118 (44%), Positives = 77/118 (65%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRL +L +A VID ++  GM++VV  LE    L +R  QG M +THMA+AL R+RRGE
Sbjct: 1   METRLQILHDAQVIDTEVYIGMLEVVKRLEQHWQLNIRHTQGEMMITHMANALTRARRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            I  +D ELL E+  S+ +  + +++  LL  FA  +   E GYLLAN++GL++A  +
Sbjct: 61  IIAAIDPELLDEIEASNVFANIREINSDLLSLFAFAIPDSELGYLLANVFGLYLAQTD 118


>UniRef50_Q7N5F7 Similar to unknown protein YhfY of Escherichia coli n=2
           Tax=Enterobacteriaceae RepID=Q7N5F7_PHOLL
          Length = 118

 Score =  106 bits (266), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/118 (52%), Positives = 84/118 (71%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ME RLNLL +  VID+DI  GM+QVV  LE +  +PVR+  G + +THMA+ALMRSRRGE
Sbjct: 1   MENRLNLLYQGNVIDQDIHDGMLQVVAQLENDWEIPVRNALGEIVITHMANALMRSRRGE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +I  +DNELL E+ QS  +  +  ++  LL  F ++++PCEEGYLLANL+ LW A  +
Sbjct: 61  QISSMDNELLMEVRQSRIFSHLQAINASLLAHFDVQLHPCEEGYLLANLFSLWAAKGQ 118


>UniRef50_C4U196 PRD domain protein n=2 Tax=Yersinia RepID=C4U196_YERKR
          Length = 152

 Score =  106 bits (264), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/119 (43%), Positives = 75/119 (63%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           METRL +L +A VID  +  GM+ V+  LE    L +R  QG M +THMA+ALMR+ +G+
Sbjct: 32  METRLKILYDAQVIDSAVYFGMLNVLTRLEHHWQLSIRHPQGEMLITHMANALMRASQGQ 91

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            I  +D+E+L E+  ++ +  + +++  LL  F  EV   E GYLLANLYGL +A   E
Sbjct: 92  VIPAIDDEILKEIEATAIFANIREINNDLLSLFVFEVPNHELGYLLANLYGLHLAQQTE 150


>UniRef50_C9RTD1 PTS modulated transcriptional regulator, MtlR family n=5
           Tax=Geobacillus RepID=C9RTD1_GEOSY
          Length = 696

 Score =  102 bits (255), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++D+     + Q +  ++ +    +        + H+A A+ R ++GE I   D   L 
Sbjct: 200 GLVDRKKLSIIEQQIERVKEKLPFTMADSSYIAFVVHLALAIERIKQGEAIH-FDPRDLQ 258

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            L  +  ++    L + L + F +++   E GY+  +L G    + +
Sbjct: 259 ALQATKEYEIARVLAESLERAFGIDIPNEEVGYMTMHLMGAKWRSRQ 305



 Score = 51.3 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 21  GMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
              Q++  +  +  + + +++      + H+  AL R   G  +    N LL ++ Q   
Sbjct: 319 KAQQLIRFVSDKLGVDLSTDRTLYEDLVVHLKPALYRLEHGMGVA---NPLLDQIKQD-- 373

Query: 79  WQAVVQLHQVLLKEF--ALEVNPCEEGYLLANLYGLWMAANE 118
           +  +  +     ++    + V   E GYL+ +     M   +
Sbjct: 374 YAELFAIVADGARQLFGDIPVPDEEIGYLVLHFAAALMREKK 415


>UniRef50_Q0I1W6 Putative uncharacterized protein n=3 Tax=Pasteurellaceae
           RepID=Q0I1W6_HAES1
          Length = 146

 Score =  101 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 64/116 (55%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL  L +  +ID+DI    + + N L  +  + ++++Q  M + H+A AL R +RG 
Sbjct: 25  IQQRLIFLVQRHLIDEDIMTITLNIRNRLGKKWRVNLKTKQVDMLLIHLAMALGRIKRGY 84

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
             + L+ +  +E+ ++  +  +++LHQ LL      +   E+ + +AN+Y L +A 
Sbjct: 85  VAKALNPDFFSEIERAVCFTKILKLHQELLTFIPFPIPKEEQSHFIANIYSLSLAQ 140


>UniRef50_C0Z8I8 Transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599
           RepID=C0Z8I8_BREBN
          Length = 701

 Score =  101 bits (253), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G+ID++    +   ++ L+ E   P+        +TH+A A+ R  +GE I   D   L+
Sbjct: 200 GLIDREKLIKVENALSHLDEELPYPLADSAYLGLVTHLALAMERIEKGEGIH-FDEHTLS 258

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           EL  +  ++    + + L + F +E+   E GY+  +L G  +  + +
Sbjct: 259 ELNGTPEYEIASNIMERLKQIFQMEIPADEIGYITMHLRGAKLRHSPD 306



 Score = 50.2 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 9/109 (8%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           + ++     + +   E    +P+ ++       +TH+  AL R +R  EI    N +L +
Sbjct: 313 NTELMVITKRFIQACEERLDIPLSNDASLFHGLLTHLEPALYRLQRKMEIR---NPILEQ 369

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           + Q     +    +    +L E    V   E GYL+ +L         E
Sbjct: 370 IKQNYPELFAVTSEAVHTILPEL--RVPDEEIGYLVMHLGAALERTRHE 416


>UniRef50_UPI0001794F42 hypothetical protein CLOSPO_02901 n=1 Tax=Clostridium sporogenes
           ATCC 15579 RepID=UPI0001794F42
          Length = 117

 Score = 98.3 bits (244), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 58/113 (51%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL LL +   ID+D    +++++   + +  + +  E G M +TH+A AL R ++ E
Sbjct: 3   LTLRLKLLKDGAQIDEDTYNNLLKIIKSFKKDFQIELSEENGGMFITHLAVALERIKKKE 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            +EP++  +  E+    +++    + + L K+  + V   E  ++L ++  L 
Sbjct: 63  LVEPIEELIFEEVRNDKNFKKANDILESLEKDINISVPEVERPFILMHIVTLL 115


>UniRef50_B7GJR6 Transcriptional antiterminator of mannitol metabolism n=3
           Tax=Bacillaceae RepID=B7GJR6_ANOFW
          Length = 691

 Score = 98.0 bits (243), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++DK     + + +  ++ +    +        + H+A A+ R  +GE I   D + L 
Sbjct: 200 GLVDKKKLFMIERQIEAMKDDLPFTIADSSYIALVIHLALAIERIMQGEAIH-FDAQHLQ 258

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
            ++ +  ++   ++ + L + F L +   E GY+  +L G  + 
Sbjct: 259 TISMTKEYETAEKIAKRLEEVFHLVIPKEEIGYITMHLMGAKLR 302



 Score = 46.0 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEI-EPLDNELLA 71
             +I     +++  +  +  + +  +       + H+  AL R +    I  PL ++++ 
Sbjct: 313 SLEIAMKTQELIRFVSEQIGVDLTDDYPLYEDLIVHLKPALYRIQHHMGITNPLLHKIME 372

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           +   S  +  V +  + +     + V   E GYL+ +     +   + +
Sbjct: 373 DY--SELFHVVQRGVRHVFS--DMTVPEEEVGYLVLHFASALLRDKQGI 417


>UniRef50_Q8EN85 Transcriptional antiterminator (BglG family) n=1 Tax=Oceanobacillus
           iheyensis RepID=Q8EN85_OCEIH
          Length = 696

 Score = 98.0 bits (243), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++D +    + + +  +  +    +        + H+A A+ R ++G+ I   D+E   
Sbjct: 199 GLVDAEKLDKIEEQIQRMRNQLPYDLADSAYIGLVVHIALAMERLQKGDIIH-FDDEYKE 257

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           ++     ++   ++   L + F+L +   E GY+  +L G  +  N+ 
Sbjct: 258 QIKDEQEYKIAAEVIGHLEEAFSLFIPEDEIGYITMHLMGAKLRENQN 305



 Score = 42.9 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 9/107 (8%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           DI     +++  +  E ++ V           TH+  A+ R ++   I   +N ++ E+ 
Sbjct: 314 DIAYKAKELIRSVSNEMNIDVTHNNRFLNDLTTHLKPAVYRLKQQMNI---NNPMIDEIK 370

Query: 75  QS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           +     ++ V +  Q +     L     E GY++ +    ++  + +
Sbjct: 371 KDYIELFEVVDKAIQHVFP--NLAFPDEEIGYIVLHFAATFLQTDSQ 415


>UniRef50_A6TVY0 Transcriptional antiterminator, BglG n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TVY0_ALKMQ
          Length = 705

 Score = 97.6 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++TR  LL    +IDK+  + +  ++ + E E    +        + H+A A+ R +  E
Sbjct: 199 IKTRNRLL---NLIDKETIRTLEGLIYIAEEEMGYKLADSAYVGLIVHLALAIKRIKNNE 255

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            I  +D E L EL Q+  +    +L   L   F ++++  E GY+  +L G     N
Sbjct: 256 II-IMDKEFLNELNQNPEFIIARKLALNLSDFFNIDIHEDEIGYITMHLMGSKNRGN 311



 Score = 45.2 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 26  VNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA--QSSHWQAVV 83
           +   ET   +    +  T  + H+  A+ R +   +I    N LL E+        +   
Sbjct: 335 IAEAETGSFIGNNEKLLTGLVNHLEPAIKRIKMKMDIR---NPLLQEIKTRYPHLIKVSS 391

Query: 84  QLHQVLLKEFALEVNPCEEGYLLANL 109
           +  +VL      ++   E  Y+  +L
Sbjct: 392 KCAKVLEDYLGQKMPESEIAYIAMHL 417


>UniRef50_Q67S02 Putative transcriptional antiterminator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67S02_SYMTH
          Length = 125

 Score = 97.6 bits (242), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E RL LL E+G I  ++ +    ++  +E    + V  E G M  TH+A AL R R G+
Sbjct: 6   LEMRLRLLQESGQISPEVAELTRWILKRVEERYDMTVTEENGAMFTTHLAVALERLRSGQ 65

Query: 61  EIEPLDNELLAELAQ-SSHWQAVVQ-LHQVLLKEFALEVNPCEEGYLLANLYGL 112
            I+ + +E LAE+      W  V + +     +     V   E GYL A+L  L
Sbjct: 66  AIDEMVSEGLAEVKAYPEEWAFVNEVVAGEAGRRLGARVPEAEVGYLTAHLITL 119


>UniRef50_B0K3R4 Transcriptional antiterminator, BglG n=12
           Tax=Thermoanaerobacterales RepID=B0K3R4_THEPX
          Length = 692

 Score = 97.2 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 1/112 (0%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L    +ID D    + + +  L+++    +        + H+A A+ R + GE IE +  
Sbjct: 193 LRLLNLIDYDTVLKIEKAILKLKSQIDYEIVESSYLGLVVHLALAIKRLQNGETIE-MGE 251

Query: 68  ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           + L EL +++ ++   +L + L +E  + +   E GY+  +L G    +  +
Sbjct: 252 DNLQELKKTNEYKFAKKLAKYLQEELDIPIPEDEIGYVTIHLIGAKYRSTTQ 303



 Score = 49.0 bits (116), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           DKDI      ++   E    +    ++       +H+  A+ R   G +I    N LL +
Sbjct: 307 DKDIEIIARDMIKEAEKIFDVSFSEDEFLEDGLKSHLVPAVYRLEMGLDIR---NPLLED 363

Query: 73  LA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +       ++   ++  VL K+  +++   E GY+  +         E
Sbjct: 364 IKTKYPLLFEKSNRVCDVLRKKLNMDIPEDEVGYIAMHFGAALERKKE 411


>UniRef50_C1I3F9 Predicted protein n=1 Tax=Clostridium sp. 7_2_43FAA
           RepID=C1I3F9_9CLOT
          Length = 129

 Score = 96.4 bits (239), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 57/112 (50%), Gaps = 1/112 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL++L +AG + K+    ++QV+N  E +  + +  +  +M +TH+ SAL R     
Sbjct: 18  LTLRLDILRDAGQLSKENYNKIIQVINYFEEKRGVKLLEDNASMFITHLCSALGRIEENN 77

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            +  LD+ +   L ++ ++   +++ + L      E+   E  +++ ++  L
Sbjct: 78  LVNKLDDVVAQSLKENENYDEALKVAKDLEAVLG-EIPDSELDFIVMHVCTL 128


>UniRef50_P96574 Putative phosphotransferase enzyme IIA component n=6 Tax=Bacillus
           RepID=MTLR_BACSU
          Length = 694

 Score = 96.0 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           GV+ K     M +++  L+ +    +        + H+  A+ R + GE I  ++   L 
Sbjct: 194 GVVSKGELLKMERILFQLKEKIAFSLSDSSYIALVVHLTYAIERIKLGETIT-MEQNELE 252

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           EL  +  + + +++   L + F + +   E GY+  +L         E
Sbjct: 253 ELMNAKEYSSALEIAGELERAFGVTIPEAEVGYITIHLRSANRKYKTE 300



 Score = 46.0 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRS--EQGTMAMTHMASALMRSRRGEEIEPLD 66
            +A  I+ +      +++  +  +  + +          + H+  A+ R +  E IE  +
Sbjct: 301 YKAQEIELETALQTKRLIAFISDKIRMDLTKNYSLYEGLIAHLEPAVSRIK--ENIEIYN 358

Query: 67  NELLAELAQSSHWQAVVQLHQVLLKEF-ALEVNPCEEGYLLANLYGLWMAANEE 119
              + E  +  ++   + + + + K F  +  +  E  +++ +         EE
Sbjct: 359 P--MKEQIKRDYFLLYMAIEEGVEKYFPGMSFSDDEIAFIVLHFGSALEIKKEE 410


>UniRef50_C6AQX2 S-ribosylhomocysteinase n=4 Tax=Pasteurellaceae RepID=C6AQX2_AGGAN
          Length = 126

 Score = 94.9 bits (235), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL       +ID+ I   ++ V   L+    + V +EQ  M + H+ASAL R +RG 
Sbjct: 3   IQQRLWAFQMRELIDEHIVDTVLNVRQHLQRHWQVDVETEQVKMMLVHIASALGRIKRGH 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
              PL  + LAE+  +  +  V+ +HQ +L+   L +   E+ Y LAN+YGL +  
Sbjct: 63  RASPLYADFLAEIQSAVIFPQVLIIHQYVLELMPLSIPEEEQTYFLANVYGLVLDQ 118


>UniRef50_C3WF22 Predicted protein n=1 Tax=Fusobacterium mortiferum ATCC 9817
           RepID=C3WF22_FUSMR
          Length = 120

 Score = 94.9 bits (235), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 60/113 (53%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++TRL +LC  G I  +  + M+ V+ + + +  + +  E G M  TH++ A+ R +  E
Sbjct: 3   LQTRLEILCSTGTISNETREVMLNVIKMFQEKHQITLTEENGAMMTTHLSMAITRVKNNE 62

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            ++ ++ E+  E+ +S   +   ++++ L     +++   E+ Y+L N+  + 
Sbjct: 63  PVKVINEEVYQEILESEFLEKAQEIYKDLESVLDVKLPEDEKKYMLVNICTIL 115


>UniRef50_A7ZA83 LicR n=3 Tax=Bacillus RepID=A7ZA83_BACA2
          Length = 651

 Score = 94.1 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 6   NLLCE-AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           +LL E AG++ KD    +   +        +P+        + H+A A  R R    +  
Sbjct: 176 DLLSEKAGILPKDDIHVIRTAIMKQVRNHKIPLSFFGLNNLIIHIAIACKRIRTENYVSL 235

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           +  + L ++   + +Q+   + + L    ++     E  Y+  +L G    A  ++
Sbjct: 236 IPED-LHDIKLETEYQSAEAIVKELESALSVTFPEQETAYIAIHLLGTKRMAQSQL 290



 Score = 48.7 bits (115), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 5/112 (4%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEI-EPLDN 67
             +ID +  +    ++  +E E  L +  +         H+  A+ R+R G  +  P+ +
Sbjct: 296 TRLIDGETSRLTEAMIEAIERELKLGITDDNELKAGLALHIKPAINRNRYGMNLRNPMLS 355

Query: 68  ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            +         ++A V    V+ ++  ++++  E GYL  +          E
Sbjct: 356 AIKENY--PLAFEAGVIAGIVIKEQTGIDIHENEIGYLALHFGAAIERRKTE 405


>UniRef50_B0A809 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM
           16795 RepID=B0A809_9CLOT
          Length = 721

 Score = 94.1 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +IDK I K +   ++    + +L +        + H++ A+ R R GE I  ++ ++L 
Sbjct: 208 NLIDKSIIKKVENSLSETIKDINLKISDSAFIGLVVHISLAVQRLRNGETIS-MEQDVLN 266

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           EL     ++   ++ Q + +EF ++V   E GY+  +L G  +    +
Sbjct: 267 ELKSIEQFKTATKIAQQIEEEFDIKVPIDEIGYITMHLRGSKLRLETK 314



 Score = 44.8 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEI-EPLDNELLA 71
           D ++     +++ +   E      +++      + HMA +L R + G +I  PL N++  
Sbjct: 322 DVELMNIAKRLIELATDEFGFDFSTDKKLLNDLVNHMAPSLCRIKMGMDIRNPLLNQIKT 381

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALE-VNPCEEGYLLANL 109
           E      +  V  +  ++ ++  ++ +   E  YL  + 
Sbjct: 382 EYK--DIYDGVANIIYIIKEKLDIDNIPESEIAYLAMHF 418


>UniRef50_Q9K679 Transcriptional antiterminator n=1 Tax=Bacillus halodurans
           RepID=Q9K679_BACHD
          Length = 700

 Score = 94.1 bits (233), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +I+ ++ + + +V+     +   P+        + H+  A+ R R+GE+IE +D   L+
Sbjct: 197 HLINLELVRNIQEVLADFRKQMVEPMADRAYIGLIVHLTLAIERIRQGEKIE-IDPSYLS 255

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           +L     ++    L + L ++  + +   E GY+  ++ G       E
Sbjct: 256 KLKMDKEFELAADLARRLEQKLGMNIPEAEVGYMTMHIRGAKAHIETE 303



 Score = 41.3 bits (96), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 21  GMMQVVNVLETECHLPVRSEQ-GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
            +  +++ +E   H+  +        + H+  AL R R   +I    N LL ++ Q    
Sbjct: 316 RVKALIHEVEKSLHVQFQDPSLFQGLVAHLKPALYRIREKMKI---YNPLLEKIKQDYEE 372

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
              V   +       + +   E G+L+ +          +
Sbjct: 373 LFHVVQVKGNKVFEPITIPEEEAGFLVMHFGSALERLKRK 412


>UniRef50_C1I943 BglG family transcriptional antiterminator n=1 Tax=Clostridium sp.
           7_2_43FAA RepID=C1I943_9CLOT
          Length = 715

 Score = 93.7 bits (232), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E RL        IDK I K + ++V+ LE E  + +        + H++ A+ R +  E
Sbjct: 210 IENRLL-----NFIDKSIIKAIEEIVSGLEKENDIRLVDSAYIGLVVHLSLAIQRIKNKE 264

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            I+ +D ++L ELA+   ++    L + +  +F +E+   E GY+  +L G  +  N 
Sbjct: 265 NIK-IDPDVLEELAKLPEFEIGKMLVRNIESKFNIEIPVDEIGYITMHLKGAKLRLNS 321



 Score = 41.3 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLD 66
            E  + + DI +    +V V+E E ++ ++ ++        H+  A+ R +    I    
Sbjct: 325 LEEDIANLDIKRIGKNIVEVVEKELNIFLKDDERLLKDLTNHLVPAISRLKMKLNIRNPL 384

Query: 67  NELLAELAQSSHWQAVVQLHQVLLKEFAL-EVNPCEEGYLLANLYGLWMAANEE 119
              + E      + A  +  ++L     + E+   E  Y+  ++         E
Sbjct: 385 LNNIKE-KYPMEYNATKKACEILKLNTKVDEIPDSEIAYITMHIAAAIYKKGLE 437


>UniRef50_C5D9V5 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Geobacillus sp. WCH70 RepID=C5D9V5_GEOSW
          Length = 661

 Score = 93.3 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            V+       + + +  ++     P+  +       H+A A+ R ++G  I  +D   L 
Sbjct: 187 DVLKPYELTLIEKEIRKMDEWLEFPLTDQSVISLTIHIAIAIKRIKKGHRIH-IDTNQLQ 245

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           EL +   ++   QL + + +  A+++   E GY+  +L G  +  ++
Sbjct: 246 ELQKKPEYKLAEQLAKQIEQWVAVKIPKAEIGYITLHLLGARLRYDQ 292



 Score = 46.7 bits (110), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 15  DKDICKGMMQVVNV--LETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           D +  + + ++++   L T+  L    E       H  S L R R G  ++   N LL +
Sbjct: 307 DYEALQIVKELIHDISLCTDERLRKDKELLLGLTIHFHSTLNRLRNGLAVK---NPLLKD 363

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           + Q     ++ V+ L   + K+  + +   E  Y++ ++    
Sbjct: 364 IKQMYRYSFEMVLSLIPKIEKKANVAIPEDEIAYIVLHIQAAL 406


>UniRef50_UPI0001C35378 PRD domain-containing protein n=1 Tax=Clostridium hathewayi DSM
           13479 RepID=UPI0001C35378
          Length = 120

 Score = 92.6 bits (229), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL +L  +GVI + I       V +L  +       ++  M +TH+A A  R   G+
Sbjct: 7   LNQRLEILLNSGVISQRISDYCKTAVKLLIKQ-KPEADGDRAAMFITHLAMAGQRILEGK 65

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           E +PLD ++L  + Q   +   +     +L +  LE    E+ +L  +L  L+M
Sbjct: 66  EEKPLDGQILESVKQEPAYSKALDFLTYMLNQTDLEFPDTEKDFLTVHLCNLFM 119


>UniRef50_C9KJT4 Transcriptional antiterminator, BglG family n=1 Tax=Mitsuokella
           multacida DSM 20544 RepID=C9KJT4_9FIRM
          Length = 705

 Score = 91.8 bits (227), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++DK +   + Q+V+ +E+     +        + H++ A+ R R+ E+I  +D   LA 
Sbjct: 200 LVDKQMIHDLEQLVHEVESGLPHHLSDTAFIGLVVHLSLAIQRMRKKEDIH-IDTATLAA 258

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           L +   ++   +L + +  +F  EV   E GY+  +L G  
Sbjct: 259 LRKRREYRMAKELARRITAQFQTEVPEDEIGYITMHLMGAR 299



 Score = 46.0 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 27  NVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVVQ 84
              ET   L    E     + H+  ++ R R   +I    N LL E+        +   +
Sbjct: 329 AQQETGRKLLDNKELFLGLVNHLGPSISRLRMHMDIR---NPLLEEMRSAYPELMELAGK 385

Query: 85  LHQVLLKEFALEVNPCEEGYLLANLYGLW 113
             + + +E    +   E  Y+  +L    
Sbjct: 386 AVKPMEQELGEALPEAEVAYIAMHLGAAL 414


>UniRef50_B0K1N4 PRD domain protein n=3 Tax=Thermoanaerobacter RepID=B0K1N4_THEPX
          Length = 124

 Score = 91.8 bits (227), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R++LL +  VID D  K + ++   L     +    E   M +TH+A ++ R +  E++
Sbjct: 7   NRIDLLVQGNVIDFDTGKAIKKIDEELRVNYEICAEDEHYEMFITHLAMSIKRLKEEEKL 66

Query: 63  EP-LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           E  +D+EL  E+    ++   + + Q +     +++   E+ ++L +L  L 
Sbjct: 67  ESTIDDELFNEVKNCPNYYRALGILQNIEDRIEIKLPESEKRFVLLHLCNLL 118


>UniRef50_Q5WK94 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WK94_BACSK
          Length = 115

 Score = 91.4 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           + TRL +L EAG I     +   QVV+    +       E   M +TH+A AL R  + E
Sbjct: 3   LYTRLQILKEAGTITDKAYRVTTQVVDEQVPDH----LHENYAMLVTHLAMALTRIEQNE 58

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            +    + ++ E+  S H  A  +  + +       +   E+ +L  +    + + +
Sbjct: 59  ALTGPGDAVMEEVLASPHLPAAKEAVEKIESLVGEPLPKEEQQFLYMHFVSTFSSVS 115


>UniRef50_B0MAI9 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MAI9_9FIRM
          Length = 696

 Score = 91.4 bits (226), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 49/108 (45%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +++++I   +++++   E E    +        + H+  A+ R   G+ I  ++ ELL 
Sbjct: 206 DLLNEEILDKVIKILKKCEDEFLSRITRHSYIGLVIHLVIAIERLLSGKTIT-MEEELLR 264

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            L +  +++   +L     +EF +EV   E  Y+  +L G  M    E
Sbjct: 265 ALKEDPYYKKAKELTAYFEEEFHIEVPESESAYVFMHLKGARMKYAVE 312


>UniRef50_C0D786 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0D786_9CLOT
          Length = 673

 Score = 91.4 bits (226), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 1/106 (0%)

Query: 6   NLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
             L E     ++    + + V  +    +  V S      + H+  A+ R +    + PL
Sbjct: 199 EALAEGEAEHQENMTRVARCVAEVIDTENFTVNSVAYQNLIVHICIAVQRIQENCYV-PL 257

Query: 66  DNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           D E    + +S  ++   ++ + L + FA+     E  Y+  +L G
Sbjct: 258 DEERQERIRRSKEYRIAQKITERLNQSFAIRFPDQEIAYIAIHLAG 303


>UniRef50_P46321 Putative phosphotransferase enzyme IIA component n=2 Tax=Bacillus
           RepID=LICR_BACSU
          Length = 641

 Score = 91.0 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 2   ETRLNLLCE-AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ET +++L E A ++ K+  + +   +        +P+ +      + H+A A  R R   
Sbjct: 172 ETEIDVLNEKADILPKEEIEIIRSAILKKMKNDRIPLSNMGLNNLIIHIAIACKRIRTEN 231

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            +     + +  +     +QA   + + L  + ++     E  Y+  +L G       +
Sbjct: 232 YVSLFPKD-MDHILHQKEYQAAEAIVKELESKLSVTFPKDETAYITMHLLGTKRMTQSQ 289



 Score = 42.1 bits (98), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 7/110 (6%)

Query: 14  IDKDICKGMMQVVNVLETECHL-PVRSEQG-TMAMTHMASALMRSRRGEEIEPLDNELLA 71
           I+++  +  + ++  ++ E  L  +  ++       HM  A+ R+R G     L N +LA
Sbjct: 297 IEEETDQLTLAMIKAVDRELKLGILHDKELKIGLALHMKPAISRNRYGMN---LRNPMLA 353

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            + +     ++A +    V+ ++  +E++  E GYL  +          E
Sbjct: 354 AIKEHYPLAFEAGIIAGIVIKEQTGIEIHENEIGYLALHFGAAIERKKTE 403


>UniRef50_C6P8P3 PRD domain protein n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6P8P3_CLOTS
          Length = 124

 Score = 91.0 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL++L +   ID++     +++ ++L++   +   +EQ  M +TH+A  + R +   
Sbjct: 5   ITMRLDILLKGNAIDRETLSMTLKIDDLLKSYDTIYRNNEQYEMFITHIAMMIQRVKNNN 64

Query: 61  EI-EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            + E LD+++  E+ +   ++  V + + +       +   E  +++ +L  L 
Sbjct: 65  YVNEVLDDDIYDEIKKCLSYKEAVDILEKIEGISNTILPESERRFIILHLCNLL 118


>UniRef50_B1C5P5 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1C5P5_9FIRM
          Length = 720

 Score = 90.6 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L +  + D++    ++  ++ LE               + H+A A+ R ++G +I  + +
Sbjct: 202 LYKEALFDEEDLYKIIDSISYLEDLLETKFDDSSYVSLLIHLAIAMKRLKKGNKI-LMSD 260

Query: 68  ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           E L +L     +       + L   F +++   E GY+  +L G  
Sbjct: 261 EQLEQLKNEDEYSVSKSFAKYLNTIFDIDIPDEEIGYITIHLMGAR 306



 Score = 42.1 bits (98), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAM----THMASALMRSRRGEEIEPLDNELL 70
           DK++ + ++++++ ++   +  + ++     +     H+  A+ R +    IE   N +L
Sbjct: 315 DKELREVVIKIIDNVQKILNKSIDNKYIDDLIKDLTVHLKPAISRLKNSLMIE---NPIL 371

Query: 71  AELAQS--SHWQAVVQLHQVLLKEFALE-VNPCEEGYLLANL 109
             +       + AV +   ++ +++ +E +   E  Y+  ++
Sbjct: 372 GTIKGKYMDIFSAVEKSCFIIKEKYYIENIPDDEIAYITMHI 413


>UniRef50_B8CZR0 Transcriptional antiterminator, BglG n=1 Tax=Halothermothrix orenii
           H 168 RepID=B8CZR0_HALOH
          Length = 741

 Score = 89.5 bits (221), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++       +  V++  E +       E     + H+A A+ R   G++I+ L  E L  
Sbjct: 205 LVSGIDLTKIESVISFAEKQLGFQFADEAYASLLVHLALAISRLLEGKDIQ-LPEERLKV 263

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           + +S  ++   ++ +++ + F + +   E GY+  +L G  +   
Sbjct: 264 IKKSDEYKIAKKIGKIMEQIFDISIPDSEIGYVTLHLMGAKLWQK 308



 Score = 44.0 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           +D+++     ++V V E    + +  +         H+   + R +      PL N LL 
Sbjct: 322 LDQELIILTKEMVKVAEDYLGVKLIDDTQLIIGLALHLKPTINRIK---YDLPLKNPLLL 378

Query: 72  ELAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           ++       ++A  +  ++L  +    ++  E GY+  +L      +  
Sbjct: 379 DVKSRYGEIFKAAKRAAKILQSKLQKSISSDEIGYITLHLGAALERSKS 427


>UniRef50_Q5WDU8 BglG family transcriptional antiterminator n=1 Tax=Bacillus clausii
           KSM-K16 RepID=Q5WDU8_BACSK
          Length = 688

 Score = 88.7 bits (219), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 45/107 (42%), Gaps = 1/107 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +D +  + +   +  ++ +    +  +     + H   A+ R ++GE+I  +D   L 
Sbjct: 192 HFVDLETIRLVQSTIQRVKEKHFDDMADQSFIALVVHATLAIERIKQGEQIR-MDAGQLE 250

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            L +        +L + L + F + +   E GYL+ +L G  +   +
Sbjct: 251 ALHKEDSLPVAQELAEALAQTFQITIPEAEIGYLVMHLRGARIGHIQ 297



 Score = 47.5 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 4/107 (3%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ-GTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           + ++   + Q +  +E +  + +         + H+  AL R R+G +I    N LL ++
Sbjct: 305 NAELAGRLKQFIAGMEQDLSVSLAEPSLFQGLLAHLKPALYRVRQGMKIH---NPLLEKV 361

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
                    V   Q       L++   E G+L  +           V
Sbjct: 362 KADYAALFAVTAKQASKAFAPLKLPEAEIGFLTLHFGAALERRKRSV 408


>UniRef50_C9XLB5 Putative transcription antiterminator n=8 Tax=Clostridium difficile
           RepID=C9XLB5_CLODC
          Length = 712

 Score = 88.3 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E RL  L +  +I     + +   +    ++  + +        + H++ AL R + GE 
Sbjct: 207 ENRLLNLMDRCII-----RKVEATLTKKLSDLDVNLADSAYIGLVVHISLALQRIKNGEN 261

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           I  +D E L EL+ +  ++   ++ + +  +F +++   E GY+  ++ G    ++  
Sbjct: 262 IT-MDKEFLKELSITEEFKLAKEIVKGMETDFNMDIPVDEVGYITMHIRGAKQRSSSN 318



 Score = 44.4 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNEL 69
            + D +I +   +++++ E E  + +++++        H+  ++ R   G EI    N L
Sbjct: 323 NLDDIEIMEITNKMIDLAEDEFKISLKNDERLFKDLANHLGPSINRLNMGLEIR---NPL 379

Query: 70  LAELAQSSHWQA--VVQLHQVLLKEFAL-EVNPCEEGYLLANLYGL 112
           L E+     +    V ++ +++  +  +  +   E GY+  +    
Sbjct: 380 LDEIKSKYSYAYDGVEKISRIIKDKLNINSIPESEIGYIAMHFASA 425


>UniRef50_B9CM75 Putative uncharacterized protein n=1 Tax=Atopobium rimae ATCC 49626
           RepID=B9CM75_9ACTN
          Length = 120

 Score = 88.3 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 62/115 (53%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R+ +L +AG +D++  + +  VV ++E EC      E   + +TH+A+AL R+   EEI
Sbjct: 6   ERIEILKQAGFVDENDAESLKNVVALIEHECGPAESDEHIGIIITHIAAALKRNVEEEEI 65

Query: 63  EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            P++ + L E+  S  +    ++   +   FA  ++  E G++L ++ GL +A  
Sbjct: 66  APINQQALEEVYASPVFPKANRIANDISDMFAERLSKDEFGFVLVHIAGLLVAHQ 120


>UniRef50_B6FZM9 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM
           13275 RepID=B6FZM9_9CLOT
          Length = 697

 Score = 88.3 bits (218), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++D DI K ++  +  L  E    +        + H+  A+ R    E IEP D+ L  +
Sbjct: 206 LLDTDIMKRVISCLINLNNEQIANLTDSSYAGLVIHITIAINRIMHNEIIEP-DSRLDED 264

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           +     +   V +   L KEF +E+   E  Y+  ++    M     
Sbjct: 265 IEHDRDYSLAVIIASSLEKEFDIEIPEIEVTYICLHIRASKMQNTSN 311



 Score = 44.8 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 38  RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFAL 95
                   + HM   L+R   G  I    N LL ++       ++   ++  +L ++  L
Sbjct: 343 DDAFIDGLIAHMQPTLVRLTNGLAIR---NPLLDQIKSDYPDIFKKCKKVTAMLEEKLNL 399

Query: 96  EVNPCEEGYLLANLYGLWMAANEE 119
           +V   E G+L  +     +   + 
Sbjct: 400 KVPESETGFLAVHFGAAVVRLEQN 423


>UniRef50_B9Y6L8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y6L8_9FIRM
          Length = 124

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 57/117 (48%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
             RLNL  E G+I  D    +  ++ + + + H+ ++ E     + H+ +A  RS  GEE
Sbjct: 4   TERLNLYLEGGMIQPDDVADVQAIITMFDQKYHIVLQEENADTFIAHLCAAFGRSATGEE 63

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +EPL  E+ AEL     +   +Q+ + ++      +NP E+ Y L ++  L     E
Sbjct: 64  VEPLPPEVKAELEGLDSYPQSLQMLKDVMAATRNRLNPTEQDYALLHINNLIARLAE 120


>UniRef50_C1PAW0 PTS modulated transcriptional regulator, MtlR family n=2
           Tax=Bacillaceae RepID=C1PAW0_BACCO
          Length = 639

 Score = 87.6 bits (216), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 2/109 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +ID ++ K + +V+     +  + +         TH+A A  R + G  IE L + L+ 
Sbjct: 187 QLIDPELFKKIKEVIVQKVNKYKIEISDISLENLATHIAIACRRIQEGFVIEELADVLVD 246

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           +           ++ + +    +L     E  Y++ +L G  +   +E+
Sbjct: 247 D--HPFEKIVANEIIKEVEDFTSLTFPETEIDYIIVHLLGTKLLHKKEL 293



 Score = 40.2 bits (93), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 28  VLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLAELAQSSHWQAVVQLH 86
             E         E       H+  A+ R R    I  PL N++       + ++  +   
Sbjct: 314 KAELNWDFRQDREFIQALTLHIRPAMNRLRYKMNIRNPLLNDIKK--KYPAAFEGAIIAS 371

Query: 87  QVLLKEFALEVNPCEEGYLLANL 109
           + + +   +EV   E  Y+  ++
Sbjct: 372 KCIEEYLRMEVVEDEIAYIALHI 394


>UniRef50_A6D1D8 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D1D8_9VIBR
          Length = 119

 Score = 87.2 bits (215), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           M+ R++LL E  VI +      M+ V +L  E ++   SEQ  MAMTH A A+ R  +  
Sbjct: 1   MKQRMSLLLEHNVISQIAFDATMRAVGILMIEWNVKEDSEQFQMAMTHFARAIDRVLQSN 60

Query: 61  EI-EPLDNELLAELAQSSHWQAVVQLHQVLLKEFAL-EVNPCEEGYLLANLYGLWMAAN 117
            I E LD+E+L E+     +  +V ++  L     + E+   E  +LL+NLY + ++ +
Sbjct: 61  PIVEGLDSEILKEMQDDDVFSDIVSMNNQLCSASGVPEMPETEISFLLSNLYAIKLSVS 119


>UniRef50_Q723N6 PRD/PTS system IIA 2 domain protein n=24 Tax=Listeria
           RepID=Q723N6_LISMF
          Length = 653

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
            G+  ++  K ++ +V                   + H+A A+ R R GE IE ++++ +
Sbjct: 200 TGIFPEEGLKEIIAIVQAFSERHDFAFTDYAFQSIVIHLAIAVERIRAGEYIENVESDPM 259

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
            ++  S        L  +L     +++   E GY+  +L   +   ++E+
Sbjct: 260 KDVFDSQR-NNTEILVSMLEDRLDIKIPAFEVGYIQLHLTAAYNQQHDEL 308



 Score = 39.4 bits (91), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEE 102
             THM SA+ R + G       N  L+++ Q     ++  +       +++ ++VN  E 
Sbjct: 340 LTTHMKSAINRLKLGMH---FKNPYLSKIKQNFPQAFEEALYFKAKFEQKYDVQVNEDET 396

Query: 103 GYLLANL 109
            Y+  + 
Sbjct: 397 AYIALHF 403


>UniRef50_A8FIW8 Transcriptional regulator n=2 Tax=Bacillus pumilus
           RepID=A8FIW8_BACP2
          Length = 652

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
            + ++ ++  + +  +V        L +     +  +TH+A A  R    + +  +    
Sbjct: 179 NSTLLPEETYQFIQGIVRSRTKASGLYLSEIGLSNLVTHIAIACKRIEEKKIVM-MPETE 237

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
           L E+     +Q   Q+ + +     +E    E  Y+  +L G  M 
Sbjct: 238 LKEIQVQPVFQVAQQMAEDIRHVLGIEFPLSEMAYIAIHLMGAKMM 283



 Score = 47.9 bits (113), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 12  GVIDKDICKGMMQVVNVLETE--CHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
            ++++D  + + Q++  +E     ++    E       H+ SA+ R R G  I    N  
Sbjct: 294 HLLEEDHFRFIHQLLAYVEEHMSLNIQFDKELIVGLSLHLRSAIHRFRYGMNIR---NPY 350

Query: 70  LAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           L ++ +     ++A V + + L ++  +E++  E GYL  ++
Sbjct: 351 LTDIKRHYPIAFEAGVYMGRWLKEKEGIEIHEDEIGYLALHI 392


>UniRef50_B0KCF7 Transcriptional antiterminator, BglG n=8 Tax=Thermoanaerobacter
           RepID=B0KCF7_THEP3
          Length = 652

 Score = 86.8 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
             K + ++V+  E++       E     + H+A ++ R +  ++++ L   +L  L Q  
Sbjct: 201 DYKQLEKIVSNAESKLKFRFSDEAFISLVIHVAISIERLKHKKDVK-LSKAVLNNLKQKD 259

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            +    Q+ + +  +F + +   E GY++ ++ G  M  N+
Sbjct: 260 EYVIAQQMAKEIEAKFNVVLPESEIGYIVLHIIGTKMQQNK 300



 Score = 38.6 bits (89), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 7/102 (6%)

Query: 23  MQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSH 78
            +++N+ E    L + +++      + H+   + R + G     L N LL ++ +     
Sbjct: 322 KEIINIAERALSLDLSNDKQLLNGLILHLRPTINRLKYGLT---LRNPLLNDIKENYPEI 378

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           +        V  K    +V   E GY+  +L      A + +
Sbjct: 379 YGVAWMTSVVFEKYLGKKVAEEEIGYIALHLGAAVERAKKPL 420


>UniRef50_C1PBK9 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Bacillus coagulans 36D1 RepID=C1PBK9_BACCO
          Length = 620

 Score = 86.4 bits (213), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
            ++D+ + + Q++  + ++  +     +     TH+  A  R   G  IEPL        
Sbjct: 175 FNQDLFQKVKQILIRIISKYRIRFSDIELQNLATHITLACKRIEDGFTIEPLPFHFKESY 234

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
                 +   ++   + K   +   P E  Y+L +L G  +
Sbjct: 235 TFER--KVAKEITGEVEKSVGIPFPPAEIDYILVHLLGTKL 273



 Score = 45.2 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRS--EQGTMAMTHMASALMRSRR 58
           + T+L     A  +  +I   +  +++ L+T+      +  E       H+ ++L R + 
Sbjct: 269 LGTKLISKHVARQVSDEIDDIVNAILHELKTQFRWDFSNDKEFRNGLTLHLHTSLNRMKY 328

Query: 59  GEEIEPLDNELLAELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
              I    N LL E+       ++  V   + +      +VN  E  YL  ++ 
Sbjct: 329 KMHIR---NPLLNEMKTKFPIAFEGAVAAGECIEAVIHKKVNEDEISYLAIHIA 379


>UniRef50_B0K247 Transcriptional antiterminator, BglG n=13 Tax=Clostridia
           RepID=B0K247_THEPX
          Length = 705

 Score = 84.9 bits (209), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           + +      + + + + E E          +  + H+A A+ R + G++I  +  E L  
Sbjct: 207 LFEDIDIPYIEECIQIAERELETVFSDAAFSGLVIHIAIAIKRIQLGKDI-IMPKEELKA 265

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           L  +  +     + ++L   F + +   E GY+  +L G  ++  
Sbjct: 266 LEITKEFAVASNIAKMLEDHFKVSIPLDEIGYITVHLLGSNVSKT 310



 Score = 41.7 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 22  MMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS--S 77
             +++  +  + H  +  ++      + H+   + R + G     L N +L E+  +   
Sbjct: 325 TEKIITNVTNKIHQDLSGDRQLFEGLLDHLRPTVYRLKHG---LKLKNPILDEIKANYKE 381

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            ++ V +  + L       +N  E GY   + 
Sbjct: 382 LFEIVKESLKPLEDYTGKALNDEEIGYFTIHF 413


>UniRef50_C4V0J7 MtlR transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC
           43531 RepID=C4V0J7_9FIRM
          Length = 708

 Score = 84.5 bits (208), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G++D    + +   V     + ++P         + H+A A+ R ++G+ I  +D   L 
Sbjct: 218 GLVDPAQIRRIDDAVAAETQDRNIP--DSARVGLVVHLALAVRRLQQGDTI-AMDAGTLE 274

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           EL Q+  +     +   + + F++ +   E GY+  +L G  
Sbjct: 275 ELRQTEEFSVAETIAARMGEVFSISIPAAEIGYITMHLLGAR 316



 Score = 48.7 bits (115), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 19  CKGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS 76
            +    ++     +   P+       T  + H+A AL R +   +I       + E    
Sbjct: 333 VQIAQSIMRRASEKSGAPLMRSRTLLTGLVNHLAPALHRLKLHMDIRNPLLAQMEE-EHP 391

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
              +       ++ +E  + V   E  Y+  ++    
Sbjct: 392 ELMEIARHAIPMMEEEAGMPVPNDEVAYIAIHIGAAL 428


>UniRef50_D0GNT1 PRD domain-containing protein n=1 Tax=Leptotrichia goodfellowii
           F0264 RepID=D0GNT1_9FUSO
          Length = 120

 Score = 83.7 bits (206), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL++L  + VID++I   ++ ++  L+ +  + +  E G M +TH++ AL R ++ E
Sbjct: 4   LKFRLDILKNSEVIDEEIYNKVISLIEHLDKKWEITLTEENGAMFITHLSMALKRIKQNE 63

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALE-VNPCEEGYLLANLYGL 112
            +  +D  +  E+  S     + ++++ + K   +E +   E+ Y+L NL  L
Sbjct: 64  NVNNIDKTVFEEVMVSDKLDKIEEIYEDIEKNIFIEKLPEEEKKYILVNLLLL 116


>UniRef50_Q8EMS7 Transcriptional antiterminator of lichenan operon n=1
           Tax=Oceanobacillus iheyensis RepID=Q8EMS7_OCEIH
          Length = 648

 Score = 83.3 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE--PLDNELL 70
            +       +  ++        + +          H+A A++R R G  I+      E +
Sbjct: 188 TLPDQQMSMIKNIIIQQLDSHQMTLSDIAIHNLFIHIAIAVLRIRDGHPIDFNAAHREEM 247

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
            ++  +  +    ++ +   K+  L     E  Y+  +L G  M  +  +
Sbjct: 248 QDMKDTKAYFVAEKIVEDTEKQLHLSFPKTETTYVALHLLGTKMVGSTNI 297



 Score = 43.3 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVR--SEQGTMAMTHMASALMRSRRGEEI-EPLDNEL 69
           ++D  I K +M  +  +E E HL +   +E       H+  A+ R + G  I  P+   +
Sbjct: 305 ILDPSIYKLIMLSLEKIEEEMHLGISQDTELMISLGMHLKPAMNRYKYGMNIRNPMLTHI 364

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                    +QA V    V+ ++  + ++  E GYL  ++
Sbjct: 365 KKNY--PLAFQAAVYAGVVIEEKTDITIDENEIGYLALHI 402


>UniRef50_P44003 Uncharacterized protein HI0487 n=15 Tax=Haemophilus influenzae
           RepID=Y487_HAEIN
          Length = 125

 Score = 83.3 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            I++ I   + ++ + L       V + Q    + H+A +L R  RG  +  L +E+L E
Sbjct: 15  QINQSIIDVIFRLRDRLAHYWQADVNTPQVDFMLLHIACSLGRIERGGCVSSLYSEMLEE 74

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +  +  +  V+ +HQ LLK     +   E+ Y LAN++ L +   +
Sbjct: 75  MQSAVIFPQVLAIHQDLLKLMPFSIPEAEQTYFLANIHSLVLEQKQ 120


>UniRef50_D1ALX8 PRD domain protein n=1 Tax=Sebaldella termitidis ATCC 33386
           RepID=D1ALX8_SEBTE
          Length = 116

 Score = 82.9 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/111 (25%), Positives = 62/111 (55%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
             RL++L EA +ID++  + + +++N +  E  L + +E G M +TH++ A+MR +  E 
Sbjct: 3   TERLDILVEAELIDQETYEKVKRIMNEVSEEFTLDLSTESGQMFITHVSMAIMRIKNNEA 62

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
              ++N +  E+ +S +++  ++  +++      E+   E+ YL+ N   L
Sbjct: 63  TTDVENAIFEEIKESENFENALRFAEIIENIIEHEIPKNEKEYLVINGCLL 113


>UniRef50_B6GBJ5 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GBJ5_9ACTN
          Length = 616

 Score = 82.5 bits (203), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           ++  + +   V    T+  + + +      + H+A AL+R   G  + PL +E ++++ +
Sbjct: 156 RESLEVIAASVEDALTDGPININAISYQNLLVHIAIALVRINAGCYV-PLASEDMSDIER 214

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            S + A  ++   +     +E+   E  Y+  +L G
Sbjct: 215 RSEYAAARRVAGGIKSRLGMELPEEEVAYIAIHLAG 250


>UniRef50_Q67SK7 BglG family transcription antiterminator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67SK7_SYMTH
          Length = 275

 Score = 82.2 bits (202), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
             R   L     +  D+     +++N+       P+  E       H+A+ + R R+G  
Sbjct: 55  RNRKRFLRLTETLSGDVIGVAEEILNLAAARFG-PLGEEAHLTLAEHLAATVDRVRKGMP 113

Query: 62  IEPLDNELLAELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           I    N  LA++       +    Q  +++     + +   E+G L  +L G W   + +
Sbjct: 114 I---PNPFLAQIQLLYPEEYALAGQAVEMIASRLGVTLPEEEQGILALHLLGAWRRESPK 170

Query: 120 V 120
           V
Sbjct: 171 V 171



 Score = 40.9 bits (95), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 38  RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFAL 95
              + +  + H+  A+     G+      N +L  +       +    +L   + +    
Sbjct: 197 DDPRLSRVLLHLRLAIDLIVSGKAET---NPVLDRIRSEYPEEFARARRLGDYMAQRLER 253

Query: 96  EVNPCEEGYLLANLYGLW 113
            V+  E GYL  +L  L 
Sbjct: 254 PVSDDEVGYLALHLLRLK 271


>UniRef50_A6LX09 Transcriptional antiterminator, BglG n=11 Tax=Clostridium
           RepID=A6LX09_CLOB8
          Length = 714

 Score = 81.8 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
             + +  V+   E +    +        + H+A A+ R    ++I  +D+  L  L+++ 
Sbjct: 190 DIEFIGNVIKTAEDQLESTLSDYSFNNLLIHIAIAIKRIELAKDI-VMDDNELKNLSKTC 248

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            +     + ++L   + +++   E GY+  +L G  +   EE
Sbjct: 249 EFSIASAMARMLENRYDIKIPKSEIGYMTIHLLGSNVMLKEE 290



 Score = 43.6 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 30  ETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--AQSSHWQAVVQLHQ 87
            T+ +           + H+   + R + G  I   +N LL E+       +  V +   
Sbjct: 312 RTKYNFEADEHLLEGLIQHIRPMIYRLKHGVSI---NNPLLDEIIYKYKEVFTLVEESLI 368

Query: 88  VLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            L K+   E++  E GY+  +         
Sbjct: 369 FLEKDLNAEISKEEIGYITLHFMASLERIK 398


>UniRef50_Q9KF98 BH0587 protein n=1 Tax=Bacillus halodurans RepID=Q9KF98_BACHD
          Length = 115

 Score = 81.4 bits (200), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ RL++L +   I +       + V    T       ++  TM +TH+A A+ R  R E
Sbjct: 4   LKARLDVLRDTNTITERASLIAERTVEQFVT----DENADSYTMLITHLAMAVTRIDRLE 59

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            + P    ++ E+ +S   +   +    + +     +   E+ +L+ +     
Sbjct: 60  PLSPPPESIMKEIYESRDLEEAKRRVAWIEETMGDTLPQEEKEFLIMHFVSAL 112


>UniRef50_C6VLU3 Transcription regulator, mannitol operon n=2 Tax=Lactobacillus
           plantarum RepID=C6VLU3_LACPJ
          Length = 634

 Score = 80.6 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           ++K     M +V+N       + V   Q    + H   A+ R + GE I     +    +
Sbjct: 193 VNKQTLNQMQKVLNKFVKILKVDVNEYQYESLLIHTTIAIQRIKNGEFITQTTTQNFDTM 252

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           A S       +L ++L+  F  E+   E  YL  ++  +
Sbjct: 253 AISPS---TNKLVKMLIVAFKCEIPDEEIAYLNMHVAAI 288



 Score = 47.1 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 1/100 (1%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           E G ID D    + + +            ++       H+  AL+R + G  I       
Sbjct: 289 EDGYIDLDRSGLVERTIVDWLRSVLTDYDNQLLRNLTLHLRPALVRIKNGISITNPYCNQ 348

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +        +   + L   + K++ L++   E  YL  + 
Sbjct: 349 VKT-YFPVAFDQALALAMAIEKQYHLQLTEDEIAYLALHF 387


>UniRef50_C7T9M3 Conserved protein n=2 Tax=Lactobacillus RepID=C7T9M3_LACRG
          Length = 116

 Score = 80.6 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           +L +L + G +  +        + + +      V      M + H++ AL RS + E ++
Sbjct: 8   KLQILYDVGKLSDEDL----AFIRLADQYLVRTVGERDSEMFLIHLSIALERSHKQEPVD 63

Query: 64  PLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
            L + L AE+     +   + + + + +   +  +  E  Y++ +L  +   
Sbjct: 64  ALPDNLWAEVTADPEYLNALNIWKHIAESRPVNFSDFETRYIIMHLVNILRR 115


>UniRef50_Q6LNG7 Putative uncharacterized protein PM1058 n=1 Tax=Photobacterium
           profundum RepID=Q6LNG7_PHOPR
          Length = 106

 Score = 80.2 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLA 71
           +I +    G ++ V++L +E  L   +EQ  MAMTH+A A  R    + I + LD ++LA
Sbjct: 1   MISQVAHDGTVKAVDLLVSEWQLDTSTEQLQMAMTHLARATDRILSDQPITQGLDEDILA 60

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEV-NPCEEGYLLANLYGLWMAA 116
           E+     +  +   ++ +L  F +E     E  + L+NL+ L+ A 
Sbjct: 61  EIISDDDFPVIQATNRQILGGFGIEQAPDAENTFFLSNLFSLYCAK 106


>UniRef50_C7TNE9 PTS system, fructose-specific IIA component n=1 Tax=Lactobacillus
           rhamnosus Lc 705 RepID=C7TNE9_LACRL
          Length = 644

 Score = 79.9 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           ID  +   + +VV     +  L +        + H+A A+ R + G  I   +++L+  +
Sbjct: 196 IDSSVVNILARVVQNASEKLGLSLSEYAIQSLVIHLAIAINRIKAGNPI-GQNDDLIRNI 254

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
                    VQL  ++ KE  + +   E  Y+  +L       
Sbjct: 255 GNERK-SEAVQLAAMVEKEVNVRLPDEEIAYIQIHLIAASANQ 296



 Score = 40.6 bits (94), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 44  MAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEG 103
               HM +A+ R R    I     E +        +   + +     +   + +N  E  
Sbjct: 328 GLTVHMQAAVKRLRVNAGISNPYTEDIKR-NYPQAFDEALIVSDDYERTEHISMNDDEVA 386

Query: 104 YLLANL 109
           Y+  ++
Sbjct: 387 YVALHI 392


>UniRef50_UPI0001C42D0A transcriptional antiterminator n=1 Tax=Bacillus pseudofirmus OF4
           RepID=UPI0001C42D0A
          Length = 713

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +ID ++   +++ ++ L  +   P+          H++ A+ R +RGE+IE   +E   +
Sbjct: 199 LIDLNVILKVLETLHELRRDGE-PIADVSYVGLAVHLSLAVDRIKRGEKIEK-HSEGFEK 256

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           + +++ ++A  +L + L + F++++   E  Y+  +L G  
Sbjct: 257 VLKTNEYEAAKRLVKKLEETFSIDIPQIEVAYVAMHLLGAK 297


>UniRef50_C9A355 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum
           EG2 RepID=C9A355_ENTGA
          Length = 117

 Score = 79.5 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  +L +L ++G++D++    +  V++ L  +  +    +Q  + +TH+A A MR +  E
Sbjct: 2   IRDKLTVLLDSGIVDQETYDYVFNVLSYLLEK-EIVEEEQQADVFLTHLAMADMRRKNNE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFAL-EVNPCEEGYLLANLYGLWMAA 116
            +  L++ + AE+    H+    +L Q L K  +       E  Y   ++  +    
Sbjct: 61  TVNSLESFIQAEIEGDPHYLHSRELWQDLQKMTSEQSFADAELDYFYLHIINMLREE 117


>UniRef50_Q184K6 Putative transcriptional antiterminator n=6 Tax=Clostridium
           difficile RepID=Q184K6_CLOD6
          Length = 656

 Score = 79.1 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 3/100 (3%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G+  +D    ++ ++     E        +    + H+A A+ R R+GE IE     L  
Sbjct: 198 GIFSEDDLSIIIDILRNFSRERKFEFSDYEFQSLVIHLAIAVERIRKGEYIE---ESLYI 254

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
              +++       L + L ++F++ +   E GY+  +L  
Sbjct: 255 GNIENNQMSNTNYLAKQLEEKFSILLPKSEIGYINLHLVA 294


>UniRef50_A8U9C7 Putative uncharacterized protein n=1 Tax=Carnobacterium sp. AT7
           RepID=A8U9C7_9LACT
          Length = 116

 Score = 78.3 bits (192), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 1/113 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ +L +L E  VI+  +     +V+       ++    ++    +TH+A A  R    E
Sbjct: 2   IQEKLTILRENNVINDSVYDYAQEVL-KFMKAQNIINNEDEADTFITHLAMATARQYTEE 60

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            I  +D  +  ++     +   ++    +     +     E  YL  +L  L 
Sbjct: 61  TINSVDQMINEQIKADQKYDEALKYWNEIAALAPIPFRENEAEYLHLHLVTLL 113


>UniRef50_C0D455 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0D455_9CLOT
          Length = 639

 Score = 77.9 bits (191), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +++   +G+  ++ ++  E  + +     +  + H+  AL R R    IE  D  L AE 
Sbjct: 191 LNRQEVEGIRIILRLVCREFSIVLSDASLSNLVIHVFIALTRYRFYNFIEA-DEALQAEY 249

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             +  + A  +L + L + +   +   E  Y   +L
Sbjct: 250 RDAVEYAAAKRLTEALEEAYDFVIPDDEVIYYAMHL 285


>UniRef50_B6G9P7 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6G9P7_9ACTN
          Length = 648

 Score = 77.5 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 32  ECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLK 91
           E    + S      +TH+  AL+R R G  + P++ E L E+ +S  +    ++   +  
Sbjct: 202 EERFAINSVAYRNLITHIVIALLRIREGCYV-PMEGEQLTEIRKSPSFPIARRISDSIGA 260

Query: 92  EFALEVNPCEEGYLLANLYGLWM 114
              + +   E  Y+  +L G  +
Sbjct: 261 RTGVVLPDEEVAYIAIHLTGKRL 283


>UniRef50_UPI000178876C transcriptional antiterminator, BglG n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI000178876C
          Length = 295

 Score = 75.6 bits (185), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 5/101 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE- 72
            D  + +   Q++N++  E    +  +      +H+   + R R+G +I    N  L E 
Sbjct: 75  FDPQVMEITDQILNLIGQEFPGTLNDKVYLALPSHIQFTIYRIRKGMDII---NPFLEET 131

Query: 73  -LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            ++    +    +  +++ K F +EV   E G+L  ++Y  
Sbjct: 132 RISFPKEYDIAAKAAELIGKTFDIEVPEDEIGFLTYHVYSA 172



 Score = 48.7 bits (115), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 20  KGMMQVVNVLETECHLPVR--SEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--AQ 75
             +  +V  +E E  +     S      + H+  ++ R    E    +DN    ++    
Sbjct: 186 NVVGSLVKYIEEERQVAFDRGSMDYVRLLMHLRFSVDRILNQEI--HVDNPFAEQIRSKF 243

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           +  +    +L  ++ KE   +V   E  +L  +LY L+
Sbjct: 244 TQEYGLATRLSGMMEKELGKKVPEAEVCFLAMHLYRLF 281


>UniRef50_Q65MQ9 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis
           ATCC 14580 RepID=Q65MQ9_BACLD
          Length = 121

 Score = 74.8 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E +L++L  + VI K+     +     L  +    V  +   M  THMA AL R + GE
Sbjct: 6   LEEKLSILLTSRVITKNAFNTTLNTFVFLSEKLKKEVIKDS-EMFWTHMAMALTRIKEGE 64

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
             E   N ++ E+ ++ +  A+ ++   +     LE+   E  Y   +L+
Sbjct: 65  SEEVPANAIINEMYETPYKSAIEEVIDFIHSLAGLELPEGELVYFYLHLH 114


>UniRef50_Q5WKS9 Transcriptional antiterminator of lichenan operon n=1 Tax=Bacillus
           clausii KSM-K16 RepID=Q5WKS9_BACSK
          Length = 649

 Score = 74.1 bits (181), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           L  L     + ++    +  ++     E  + +          H+  A  R   G  I  
Sbjct: 186 LTSLQLTAFMKEEQLADIWDILVTTMQENGVTLSDIAINNLFIHIVIAFKRIEAGHHIS- 244

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           L  + ++++     +    ++   L     +     E  Y+  +L G  + A  E
Sbjct: 245 LYRKDMSDICSQHEYYVAQKMIARLNTHLGVSFPEMEIAYIAIHLLGTRLVAENE 299



 Score = 55.2 bits (132), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELL 70
           V D +  K    +V  +E E  L + ++Q      M H+  A+ R R G  I    N +L
Sbjct: 308 VFDDEYYKLAKAIVEKVERELDLNIANDQELLVSLMLHLKPAINRYRYGMNIR---NPML 364

Query: 71  AELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           A++ Q  +  ++A V    V+  +  + ++  E GYL  ++       N++
Sbjct: 365 ADIKQHYTLAFEAAVIGQAVIKDKLGISIDENEIGYLALHIGAALERRNQQ 415


>UniRef50_B9CU63 Transcriptional antiterminator, BglG family/DNA-binding protein n=3
           Tax=Staphylococcus RepID=B9CU63_STACP
          Length = 675

 Score = 73.7 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 42/107 (39%), Gaps = 1/107 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++D D    + +++     +    +          H+  ++ R + GE +  L+ ++   
Sbjct: 196 LVDLDRIFKIERILMDYLGQLPYTLTESSYLTLTIHIVLSITRMQNGEYVS-LNKDIYET 254

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           +  +   +   ++ + L +   +E N  E  ++  +L G      ++
Sbjct: 255 VKDTFEHEVATEIAKRLEEIHNVEFNQAEITFITIHLRGAKRKGTKD 301


>UniRef50_A8W0Y8 Transcriptional antiterminator, BglG (Fragment) n=1 Tax=Bacillus
           selenitireducens MLS10 RepID=A8W0Y8_9BACI
          Length = 200

 Score = 73.3 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE- 72
           +D+     M + ++ LET     +          H+  A+ R   G+ I    N  L E 
Sbjct: 2   VDEQFVGVMNEFIDKLETRFGANLNEHIHIGLTDHLHFAVKRIENGQGIH---NPFLQET 58

Query: 73  -LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            LA    +    +L +    +  + + P E G++  +++   
Sbjct: 59  ELAYPQEFAVATELTEWFGNQVGIRIPPGEIGFITLHIHSAL 100


>UniRef50_C1QBY4 PTS system IIA component; transcriptional antiterminator, BglG
           family n=1 Tax=Brachyspira murdochii DSM 12563
           RepID=C1QBY4_9SPIR
          Length = 621

 Score = 72.9 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
           I K + + V     +  + +        + ++  ++ R + G+ I+  D ++L ++ +  
Sbjct: 172 INKSIEKFVIDFIKDNDIKLSEINLENFILYILVSIERIKMGKVIDCYDKDILKDIKE-E 230

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
             +   QL ++L KE  ++ N  E+ ++  ++    +  + E
Sbjct: 231 ELKLANQLAEILEKESNIKFNEAEKIFIAIHIASKSLLISSE 272


>UniRef50_Q040S8 Beta-glucoside operon antiterminator n=12 Tax=Lactobacillus
           RepID=Q040S8_LACGA
          Length = 282

 Score = 72.5 bits (177), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R  LL      D    +   ++V+ L+ E ++ +          H+A+++ R+++G   
Sbjct: 55  QRKLLLETIHETDPIFFQISQKIVDRLKHEENIELADSVYITLTDHLATSVERAKKGLY- 113

Query: 63  EPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
             L N+ + E+       ++  +   ++L  +F L     E G++  ++  
Sbjct: 114 --LSNKFIWEVKNYYPKEYRYGLWALKLLDAQFDLNFPEDEAGFIAVHIIS 162


>UniRef50_C6PFK2 PTS modulated transcriptional regulator, MtlR family n=3
           Tax=Thermoanaerobacter RepID=C6PFK2_9THEO
          Length = 651

 Score = 72.5 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            ++       + +++   E + +  +        + H+A ++ R   G+++     +L  
Sbjct: 183 DLLKDVDLNAIQRIIQGSEEKFNYILSDVSFKGLLIHLAISIKRLWEGKKVTLDLKDLNL 242

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            L +   W+    L + + K F + V+  E GY+  +L G  +  + E
Sbjct: 243 -LKKEKEWEIAKDLAKNIEKRFNVVVDDTEIGYITMHLMGAKLQNDIE 289



 Score = 43.3 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 14  IDKDICKGMMQVVNVLET--ECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           +D  +   +  +VN +            +       H+   + R + G     LDN  L 
Sbjct: 301 LDCKLYIILKSIVNDIAEMTGYKFYNDKKLLVGLFLHLKPTINRLKNG---VKLDNPFLE 357

Query: 72  ELAQSS--HWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           E+ +     ++  +   + L + + + VN  E GY+  + 
Sbjct: 358 EIKKECGIAFEISISFWEKLKEFYKINVNEDEIGYVAIHF 397


>UniRef50_Q8NVE5 MW2083 protein n=56 Tax=Staphylococcus RepID=Q8NVE5_STAAW
          Length = 710

 Score = 71.8 bits (175), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 12/102 (11%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +D +    + +++    +     +          H+  ++ R + GE +  L++++  
Sbjct: 195 DFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYV-ALNDDIYD 253

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            +  +   +   +L   L + + +  N  E  ++  +L G  
Sbjct: 254 SVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAK 295


>UniRef50_B6G824 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6G824_9ACTN
          Length = 470

 Score = 71.4 bits (174), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
              +   V+       L + +      + H+  AL+R      + P+++  L  +  +S 
Sbjct: 2   LDAIAVCVSEAAEAQLLTINAAAFQNLLVHIVIALIRISNDCYV-PIEDSRLQRIVATSE 60

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           ++A   + + +    ++ +   E  Y+  +L G
Sbjct: 61  YRAAEDIARRIDALTSISLPQEEVAYIAIHLAG 93


>UniRef50_C4G9M5 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles
           DSM 14600 RepID=C4G9M5_9FIRM
          Length = 698

 Score = 71.0 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECH--LPVRSEQGTMAMTHMASALMRSRR 58
           + TR   L    ++  D    + +V+  +  E      +     T  + H+A A+ R ++
Sbjct: 190 IHTRDQNLY--ALLATDTVSRVYEVLARMRKEETRLKGLAESAYTNLIFHLAIAVERVKK 247

Query: 59  GEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           G  +E  D  L+ +L     +    ++   + +EF++ +   E  Y+L +L G  MA +E
Sbjct: 248 GAIVEE-DPGLVNKLGTWDEYALAGKIRGEIEREFSIHMPDQELSYILLHLLGSKMAYHE 306



 Score = 46.0 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 16  KDICKGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +D+ + + ++++  +TE    +    E     + H+  A+ R      I    N +L E+
Sbjct: 319 EDLLEIIDRMIDQFDTEMANSLKCDEEFIRGLIMHLQPAMFRMSEKMSI---YNPVLPEI 375

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            +     +    +  +V+  E A EV+  E G+L  + 
Sbjct: 376 KREYPEIYAKSRRAAEVIRDETAFEVSDDEIGFLSMHF 413


>UniRef50_A0AMB6 Complete genome n=18 Tax=Listeria RepID=A0AMB6_LISW6
          Length = 638

 Score = 71.0 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           E     +   + + QVV     + ++ +        + H+A A+ R +    +   D   
Sbjct: 188 ERNFFSEVNLEMIEQVVISNIAKYNIHMTDISVKNLIIHIAIAVCRVKDNCYVHVTD--- 244

Query: 70  LAELAQS-SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           L ++  S   ++A   + + +     +     E  YLL +L  
Sbjct: 245 LEDIEFSIPEFRAAQDIIKEIDLSEGIHFPESEISYLLLHLSS 287



 Score = 37.9 bits (87), Expect = 0.097,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS 76
              + +++  ++       + +Q   +    H+  A+ R +    I+    + L      
Sbjct: 300 YIIVDKMLTKIKELYGYDFKQDQKMISNIALHLKPAINRMKFNMNIQNPYLKNLKS-NYP 358

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLAN-LYGL 112
             ++  +    VL +E   +VN  E GYL  + LYGL
Sbjct: 359 LAFELGLVAKDVLEQELKTKVNEAEVGYLAIHFLYGL 395


>UniRef50_A6NQL9 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
           ATCC 29799 RepID=A6NQL9_9BACE
          Length = 657

 Score = 69.1 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL-AEL 73
            K     M ++++  E +    +     T  + H++ A+ R   G+ +  +D++     +
Sbjct: 213 PKADVGEMAKIIHDAEKKYDFYLMDSYYTSLLVHLSIAVERLSGGQSV--VDSDAYPESI 270

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
            +    +    +   + + F + +   E  Y+  +L G  +
Sbjct: 271 LEYREGEIAKYIAWRMEEAFHICIPNSERSYICIHLMGAEL 311


>UniRef50_Q03GK2 Transcriptional antiterminator n=1 Tax=Pediococcus pentosaceus ATCC
           25745 RepID=Q03GK2_PEDPA
          Length = 625

 Score = 68.7 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 13/105 (12%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTM-AMTHMASALMRSRRGEEIE-PLDNELLA 71
           I K+    +  +++ + +   + +   +       H++  + R + G+ I+ P+  ++ A
Sbjct: 280 ISKETLNLIKSILSYVRSIYRIDLTGPEFLNQFAIHVSRLIQRLKSGKSIQNPMATQMKA 339

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
                + ++  V +   +  +  +EV   E  Y+  ++       
Sbjct: 340 --QSPTVYECAVLISHKIASQVGVEVPDNEIAYIAMHIGNAIAKQ 382



 Score = 40.2 bits (93), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/88 (10%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
             +     +  +      +  + + +      + H+  A+ R R G + +  DN      
Sbjct: 174 FPEVNLDSLYAITQKFAKKNEIYLNTFDLNNIILHITIAIQRIRNGYQFQTRDNRFNW-- 231

Query: 74  AQSSHWQAVVQLHQVLLK-EFALEVNPC 100
                 +   +L   + K +   +    
Sbjct: 232 ---KSSKFAQELLNEVEKSQKNFKFPDE 256


>UniRef50_C8NIB7 Putative uncharacterized protein n=1 Tax=Granulicatella adiacens
           ATCC 49175 RepID=C8NIB7_9LACT
          Length = 122

 Score = 68.7 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +E +L++L  A VID+D  K +++  +    E  +     +  + + H+A A  R R+ E
Sbjct: 2   LEEKLDVLVVADVIDEDTKKYILKASDFFRNEMKIN-DDTKVEVFLIHLAMAESRRRKNE 60

Query: 61  EIEP-LDNELLAELAQSSHWQAVVQLHQVLLKEFALEV-NPCEEGYLLANLYGLW 113
            ++  ++  +  E+    ++    +    L      EV +  E  ++  +L  L 
Sbjct: 61  VLDAKMEEIIRNEVNNHHNFAECKEFWSRLSNYIGEEVYSENELEFIYLHLLNLL 115


>UniRef50_A0RA54 Transcription antiterminator, BglG family n=75 Tax=Bacillus cereus
           group RepID=A0RA54_BACAH
          Length = 651

 Score = 68.3 bits (166), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +  V+        + +   +    + H+A AL R      ++ L+ E  +EL     +  
Sbjct: 203 IRSVILKYIEGGTIYLSDIEIDNLVIHIAIALKRCEDQHYMKGLNAE-QSELIIKKEYTI 261

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
             Q+   L KE  L     E  Y+  +L    + + +
Sbjct: 262 AKQIVGELEKELHLSFPKEEVLYVTMHLLSTAVTSKD 298



 Score = 43.6 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
            ++ KD+   M  ++  +  E +L      E       H+ + L R +         N L
Sbjct: 305 ELLGKDLYAFMQHILFKVAEERNLIFYYDEELLFGFGVHLKTLLNRLKYKLNTR---NPL 361

Query: 70  LAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           LAE+ +     ++  V +  ++ +     +   E GY+  +  G      E+
Sbjct: 362 LAEVKKNYPYAFEIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQ 413


>UniRef50_C7REJ5 PTS modulated transcriptional regulator, MtlR family n=2
           Tax=Anaerococcus RepID=C7REJ5_ANAPD
          Length = 625

 Score = 68.3 bits (166), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D+++   +  ++  ++      +        + H+  +++R + G+ I+ L +EL   + 
Sbjct: 182 DEELFTRIQAIIADIDFPESFYMPYANFKNLVVHIYISILRIKEGKYID-LSDELSKRVI 240

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
               +    ++ + L K+  L     E  YL  +L       N E
Sbjct: 241 SYDEFNIANKVVKELSKKLDLTFPEDEILYLTMHLISKNAVTNYE 285



 Score = 40.2 bits (93), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 14  IDKDICKGMMQVVNVL--ETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           +  +I +   ++++ +   ++       +       H+   + R R G     + N +L 
Sbjct: 287 VSPEISELAQKMIDEIYKVSKYDFRSNIDLFFALALHLGPLIERLRYGLT---MKNPILN 343

Query: 72  ELAQSSH-WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           ++  +   +         + + +   V   E GY+  ++   
Sbjct: 344 DIKDNQIAFMLATVATNPINETYKTRVCDDEIGYIALHIASA 385


>UniRef50_B4U3Q3 BglG family transcription antiterminator, PTS system IIA component
           n=8 Tax=Streptococcus RepID=B4U3Q3_STREM
          Length = 665

 Score = 65.2 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNE 68
            +   +D      +  +V     +  L +        + H+A  + R R G  +      
Sbjct: 186 VDNTFLDHIKFADITIIVLDECRDAKLKLSDFVMHNLVLHIALMVQRIRSGYPLAFF--S 243

Query: 69  LLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           + A + QS  +Q  +++   + +   +     E  Y+  +L
Sbjct: 244 IPAAIRQSDEYQVALRILYRVEEVMGIRFPKEEANYIALHL 284


>UniRef50_Q63A16 Possible transcriptional antiterminator, bglG family n=15
           Tax=Bacillus cereus group RepID=Q63A16_BACCZ
          Length = 701

 Score = 65.2 bits (158), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           E   + ++    + +++   E    +    E       +M     R  +G+ +E ++   
Sbjct: 193 ETDTLARETLYIIKKILANCEEFLGVQYTDEVLENLSVYMYLFHRRILKGKCVE-MEEAE 251

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
              L  S  ++A   + +   + F ++    E  Y+  +L G  +   E V
Sbjct: 252 KNVLKDSKQFEAAKYIAKQFERAFVVKFPIDEIYYITTHLLGAKVNYQENV 302



 Score = 37.9 bits (87), Expect = 0.093,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLP--VRSEQGTMAMT----HMASALMRSRRGEEI 62
            +  V +K+    +  +V+ +  +      V  +      T    HM  A  R + G EI
Sbjct: 298 YQENVYEKNNMDEIHSIVDCMIKDFQHYACVLFQDFNGLFTDLYLHMKPAFYRVKYGIEI 357

Query: 63  EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           E      + E      +    ++     +     V+  E  Y+  + +G WM   
Sbjct: 358 ENPLRNTIQE-NYEEVYFLTKKVIHHFEEYVRKSVSDDEIAYVTMH-FGAWMRKE 410


>UniRef50_B9Y4E8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y4E8_9FIRM
          Length = 654

 Score = 64.8 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 44/108 (40%), Gaps = 3/108 (2%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           ++D  + +  ++  +  +  + +  +     + H+  A+ R +    ++ +++E L EL 
Sbjct: 210 NQDEIRFVRGLLEEIMEKYGIHMSDQSLQNFVIHIIIAIRRWKFYNYVK-IEDENLGELR 268

Query: 75  QS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
            S    W A   L + L  +  + +   E  Y   +     +   +E+
Sbjct: 269 SSVAREWPAAQDLVRRLQDKLEILLPQEEILYFALHFKSKHITELDEI 316


>UniRef50_C5EFS9 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA
           RepID=C5EFS9_9FIRM
          Length = 643

 Score = 64.8 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           +   + +  +++ +E +             M  +A  + R R G    P + E L    Q
Sbjct: 186 ETDLQEIHTILHDMEDDYGFTFADSSYAEMMISLAITVERVRNGNVCCPTEGE-LNGYRQ 244

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
            + W     + + L +EF + ++  E+ Y+  NL G  + 
Sbjct: 245 KNQWSMAGHMARKLEQEFHIVMDEGEQAYITMNLMGAKLQ 284


>UniRef50_C6CTN7 Transcriptional antiterminator, BglG n=1 Tax=Paenibacillus sp.
           JDR-2 RepID=C6CTN7_PAESJ
          Length = 286

 Score = 64.8 bits (157), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA-E 72
           +D ++ +   Q+++ +      PV  +      +H+   + R R G EI  ++  L   +
Sbjct: 75  LDPEVVQISEQIIDEIRERLGTPVDPKVYFALPSHIQFVVYRLRNGMEI--VNPFLYETK 132

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +     ++   +  +++ ++F + +   E G+L  ++Y  
Sbjct: 133 MCYPQEFKIAAKAAKMISEKFDITIPEDEVGFLTYHVYSA 172



 Score = 53.3 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
           + M ++V  +E     P+  +       + H+   + R  + +E E   +  + +    +
Sbjct: 186 ELMNEIVERIEGWREAPLSKKSSDYARLIMHLRYMMERILQNKETENPFSAEIKD-KIPT 244

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
             Q    + Q++ +   ++V+  E GYL  +LY L+ + + E
Sbjct: 245 EHQKAELIAQMIGERLNVKVSSDEIGYLAMHLYRLFRSVDAE 286


>UniRef50_C7IC29 Transcriptional antiterminator, BglG n=1 Tax=Clostridium
           papyrosolvens DSM 2782 RepID=C7IC29_9CLOT
          Length = 643

 Score = 64.1 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 1/105 (0%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
            K     +  +++  E +    +  E      TH+  ++ R  +G +++  ++EL+    
Sbjct: 209 PKINIDEIGNIIHNAEKKFAFFMPEEHYNSMFTHLVISIGRLLKGIKVDD-ESELIEGQC 267

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
                Q    +   L +EF + +   E  Y+  +L GL + +  +
Sbjct: 268 NDIETQVARYIVSRLEEEFKISIPQAEFAYICMHLMGLNIYSGTD 312


>UniRef50_Q1JGE0 Transcription antiterminator, BglG family / PTS system, mannitol
           (Cryptic)-specific IIA component n=14 Tax=Streptococcus
           RepID=Q1JGE0_STRPD
          Length = 664

 Score = 64.1 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +M +V     +  L +        + H+A  + R R G  +E     +   + QS  +Q 
Sbjct: 198 IMIIVLYECRDAKLKLSDFVMNNLVLHIALMVQRIRSGCPLELFSIPI--AIRQSDEYQV 255

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANL 109
            +++   + +   +     E  Y+  +L
Sbjct: 256 ALRILYRVEEVMGIRFPKEEANYIALHL 283


>UniRef50_C5WHN0 Transcriptional antiterminator bglG n=1 Tax=Streptococcus
           dysgalactiae subsp. equisimilis GGS_124
           RepID=C5WHN0_STRDG
          Length = 661

 Score = 64.1 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 25  VVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQ 84
           +V        L +        + H+A A+ R ++G  I P++   L E            
Sbjct: 200 IVLDECRNQELKLSDYAIQNLVIHLALAIQRFQKGFRIAPVE---LCECKYQKELLVARN 256

Query: 85  LHQVLLKEFALE--VNPCEEGYLLANLYGLWMAANE 118
           +   L      E  +   E  Y+  +L    +A  +
Sbjct: 257 IADRLANRLGQEELIPEEETAYIALHLISKSVAEQD 292


>UniRef50_A8U731 Transcriptional regulator n=1 Tax=Carnobacterium sp. AT7
           RepID=A8U731_9LACT
          Length = 641

 Score = 64.1 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSR-RGEEIEPLDNELLAE 72
           I       + ++V     +  +P+        + H+  A+ R R +   I+   N +   
Sbjct: 188 ISSTDKVSVEEIVIRNIRKYQIPITDIGFRNLIIHVEIAISRLRFQNNSIDQKPNTIEE- 246

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
              S  +     + + +  +  L +   E   +  +L G       E
Sbjct: 247 --HSDEYYCAKAIAKEIEAKINLTIPENEIANIYLHLLGQKRMLVSE 291



 Score = 50.2 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 7/103 (6%)

Query: 20  KGMMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
           + + +V+  +     L  R +       + H+ SAL R R    I   +NEL+ E+  + 
Sbjct: 304 ELIERVIVEINEMYQLDFRQDVILKNGLLLHLESALHRIRLNMPI---NNELIEEIKNNY 360

Query: 78  HWQ--AVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            +       L   L   F ++++  E G+L  +  G    AN 
Sbjct: 361 PFPMQLAKILASSLETNFNIKIDINEVGFLTLHFCGALERANS 403


>UniRef50_A6M2G4 Sigma-54 factor, interaction domain-containing protein n=1
           Tax=Clostridium beijerinckii NCIMB 8052
           RepID=A6M2G4_CLOB8
          Length = 895

 Score = 64.1 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            ++DKD+   + +++   E E  + +  +       H+++++ R RR ++I       + 
Sbjct: 434 NIVDKDVMDIIEEIILFCEEELGIKLDKKISYGLAVHISNSIDRIRRNKKIVNPKLSSIR 493

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           E      +   +   +++ +   + +   E G++   L
Sbjct: 494 E-ENKKEFSVALDALKMIERSIDISMPIDEAGFIAMFL 530


>UniRef50_A0Q2H7 SACPA operon antiterminator n=3 Tax=Clostridium RepID=A0Q2H7_CLONN
          Length = 279

 Score = 64.1 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L     +D  I +    ++ ++  E   P+        + H+   + R + G     L+N
Sbjct: 63  LQFTNNLDPKIAELTKDILKIISEEFSRPLNPNVHVNLIDHIQFTVKRLKSGMI---LEN 119

Query: 68  ELLAE--LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
             L E  L     +    +  ++L K   +     E G++  ++ G     +++
Sbjct: 120 PFLTETKLLYPKEYAVAEKAVEILSKGLNMHFPDAEIGFITLHICGGLNEKSKK 173



 Score = 54.8 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGT--MAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           +  + +  ++N +  + ++ +          + H+   L R +  + ++   N LL EL 
Sbjct: 177 ENAQLINTILNFVSKKLNITLDPHSFEYKGFVNHLRGVLNRIKNNKILK---NNLLTELK 233

Query: 75  QSS--HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           + +   ++    + +++     + V   E GY+  ++  L
Sbjct: 234 KRNIIEYKIAYDVSKIIENVLQISVPEDEIGYITIHIMKL 273


>UniRef50_C0CV60 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0CV60_9CLOT
          Length = 699

 Score = 63.7 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSR-RGEEIEPLDNELLAELA 74
           +D    +  +V  +E      +        + H+A ++ R R   E  EP   + +    
Sbjct: 190 EDGLNKIKAIVTDVEEAFATYLDDIAYEALVIHIALSIKRFRLDEEYGEPKAADRIE--R 247

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            S  +Q  +++ + + + F + +   E  Y+  ++     A  ++
Sbjct: 248 DSLQYQMALEIVRRVNECFRIRLPDAEISYVAVHMGAKSSAITKQ 292


>UniRef50_C2C483 Possible MtlR transcriptional regulator n=1 Tax=Listeria grayi DSM
           20601 RepID=C2C483_LISGR
          Length = 691

 Score = 63.7 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +ID+ + + + +V+     +    +  +     + H+  ++ R   G  I  L NE   
Sbjct: 196 HLIDRKLIQKVEKVLRNWRQQLEYQITDDAYISLVIHIVISIDRMLAGHFIYELRNENAK 255

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
                  +Q   ++    L+  A  V   E G +  ++ G     
Sbjct: 256 RY---PEFQTAKEIIAECLEMEADVVPDGEAGLVTMHIRGAKALH 297


>UniRef50_A8AYJ7 Transcription antiterminator BglG family n=3 Tax=Streptococcus
           RepID=A8AYJ7_STRGC
          Length = 662

 Score = 63.7 bits (154), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 25  VVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQ 84
           +V     E  L +        + H+A +L R   G +I+ LD+  + E       +   +
Sbjct: 200 IVLDECREGQLKLSDFVIQNLVIHIALSLKRIGEGFQIKQLDSWSMDEYR--EEGKIAEK 257

Query: 85  LHQVLLKEFALEVNPCEEGYLLANLYG 111
           + + +     L+    E  Y+  +L  
Sbjct: 258 ILKRVYHSTGLKFPKEEVDYITLHLVS 284



 Score = 40.9 bits (95), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A  I K +   + Q  +    E       +     + H+++  +R +       +DN LL
Sbjct: 299 AQQIRKQLLFVLEQ--SNFTHEYPFKNDFQLIEGLVAHLSTLFVRLKNH---VKMDNPLL 353

Query: 71  AELAQSSHWQAVVQLHQVLLKEFAL----EVNPCEEGYLLANLYGLWMAANEE 119
           AE+    H+  V+++   +L    +    +++  E  Y+  +         E+
Sbjct: 354 AEIQN--HYAGVLEMTGNILSAMPIFANEKLSADEVAYVALHFMTSLERLKEK 404


>UniRef50_A5IPR4 Transcriptional antiterminator, BglG n=52 Tax=Staphylococcus aureus
           RepID=A5IPR4_STAA9
          Length = 651

 Score = 63.3 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 12/111 (10%), Positives = 38/111 (34%), Gaps = 1/111 (0%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
             EA + + +    + + +       +  +        + H+  A+ R       +   N
Sbjct: 174 FIEADIFNSESIALVRRAIIKTLNSENYHLVQSAIDGLIYHILIAIQRLNENFSFDIPIN 233

Query: 68  ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           E+  +   ++ +    ++ + L +   +     E  ++  +L G  M  + 
Sbjct: 234 EI-DKWRHTNQYAIASKMIENLERSCNVTFPESEIIFITLHLLGSKMTEHT 283



 Score = 40.2 bits (93), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL- 73
           D+ + + +++  +  E  + +  +    T  +TH+  A+ R +         N L  E+ 
Sbjct: 293 DLSQNIHELITCVSQELGIDMSKDNKLHTSLITHIKPAIHRIK---YDMLQPNPLRQEVM 349

Query: 74  -AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                  +AV +    + ++ A+  N  E  Y+  +   
Sbjct: 350 RRYPQIIEAVSKHISPIEQDAAIRFNEDELTYITIHFAS 388


>UniRef50_C2H7N3 BglG family transcriptional antiterminator n=12 Tax=Enterococcus
           faecium RepID=C2H7N3_ENTFC
          Length = 661

 Score = 63.3 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L ++        + ++ ++     E  L V          H+A  + R R G EI+ L  
Sbjct: 187 LGQSRFFTDISFEELVIIILDETREAKLKVSDFIIQNLSLHLALGIKRLREGFEIKEL-- 244

Query: 68  ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +  E++    +Q   ++ Q +     +     E  YL  +L  
Sbjct: 245 GIEQEVSDRVEYQVAQRIVQRIEVIADVSFPQEEIAYLTLHLMA 288



 Score = 45.6 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIE-PLDNELLA 71
           D+++ K +++V+  L  E    +  +       + H++  ++R  RG  IE PL  E+  
Sbjct: 298 DQELSKEVVKVLKRLSQEFRFSLIEDHQLFNGLLDHLSPMMIRLSRGIRIENPLTEEIKK 357

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           E      ++AV      +       +N  E  YL  +L    
Sbjct: 358 E--NPKVFEAVKTHFSNMPALKNYTINEDEWAYLALHLMAAL 397


>UniRef50_C4FAP7 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis
           DSM 13280 RepID=C4FAP7_9ACTN
          Length = 295

 Score = 63.3 bits (153), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           RL  L +   I  +       +V +L  E    +          H++ AL R + G    
Sbjct: 57  RLERLIKG--IPSEYLLIAEDIVAMLRRESDSVIDDSVLIALTDHISMALEREQAG---I 111

Query: 64  PLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
             DN LL E+ +     ++  ++  +++     +E++  E G++  ++    M    +
Sbjct: 112 ICDNPLLFEIKRFYGREFELALKAREIIRGHLGIEISEAEVGFIALHIVNATMKQRTD 169



 Score = 38.3 bits (88), Expect = 0.074,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 19  CKGMMQVVNVLETECHLPVRS--EQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--- 73
            K +  ++N +     L       Q    + H+     R    + I   ++  L  L   
Sbjct: 175 IKMINGILNTVSETFGLTYDEGSVQYERFLRHLQFFSQRVLD-KSIAQSEDTFLFHLGKD 233

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
                 +   ++   + +E+   V+  E+GYL+ ++  L
Sbjct: 234 QYPDALECTERIGAHIEQEYGCVVSDAEKGYLVYHIANL 272


>UniRef50_B0KCX3 PTS system transcriptional activator n=13 Tax=Clostridia
           RepID=B0KCX3_THEP3
          Length = 901

 Score = 62.9 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           V+DK I   +   +N    +   P   +       H+AS++ R   G++I    N  L  
Sbjct: 443 VVDKKIVDIVNDFLNYASKKLKRPFSEKTLYGLSMHVASSVERILSGKDIV---NHQLEN 499

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           + +     ++    L + + KEF ++V   E G++   L 
Sbjct: 500 IKKVYEKEFEVANVLRERVQKEFNIKVPDDEVGFVTMFLC 539



 Score = 43.6 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 8/101 (7%), Positives = 37/101 (36%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++    ++ E   ID +      +          + +  +     + H+A  + R  +G+
Sbjct: 790 IDNMKEVIRENIKIDSEKYISFFKKFYAALIREGVNLNEDITIGLILHLACVIERILQGK 849

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCE 101
           ++  + +           +  + +  +++ +   ++++  E
Sbjct: 850 QLIHMKDTQEYIKNYPKEFDIIKKAIRIIEEGCNVKISDEE 890


>UniRef50_O31644 Putative phosphotransferase enzyme IIA component n=19
           Tax=Bacillaceae RepID=MANR_BACSU
          Length = 648

 Score = 62.9 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
              + + +  L+ +  L    E     + H    + R +  + I  L  + +A + +   
Sbjct: 193 VDFVTKEIKSLQKKHSLYFTDETFESLLLHTLLMVRRIKMKQPIS-LSPKEMAAVKKKKE 251

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
           +Q      Q L   FA+     E  YL  ++ G  +  
Sbjct: 252 YQWTFACLQRLEPVFAIRFPEEEAVYLTLHILGGKVRY 289


>UniRef50_D1B7A6 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Thermanaerovibrio acidaminovorans DSM 6589
           RepID=D1B7A6_THEAS
          Length = 646

 Score = 62.5 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +        +   V        + +  E       H+A ++ R R G  +E   +E L  
Sbjct: 186 IFHPGEMSFLEARVRRALEMAQVRLTGEAVLGLTVHLAVSIKRVRTGGALEICRDEGLE- 244

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                  +A   + + + +   + + P E  YL  ++    
Sbjct: 245 --GRREMEAARLMARWVEEGLGVTMPPGEVEYLAMHVMSSR 283



 Score = 44.8 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
             L  +A  + + +     + ++    E    +    G     H+++++ R R G    P
Sbjct: 291 KELARDAEAVARILLDHFARSLDRRLQEDPQLLADLSG-----HLSTSINRLRCGF---P 342

Query: 65  LDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
             N +L ++ +     ++  ++    + ++  + +   E GY++ ++    
Sbjct: 343 SSNPILGQIKRAFCYSFEVGLEGAARVQEDMGINLPEDEVGYVVLHVQAAL 393


>UniRef50_A4EAF5 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4EAF5_9ACTN
          Length = 272

 Score = 62.5 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            RL  L E+  I          +V +L  E ++ +  +       H++ AL R R+G  I
Sbjct: 50  DRLAHLLES--IPTVNLVISEDIVQMLRRELNVDINDKILIALADHISLALERERKG--I 105

Query: 63  EPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
              +N LL E+ Q     +    +  Q++ +   ++++  E+G++  ++    M    +
Sbjct: 106 SC-ENPLLLEIQQFYRKEYALAGRALQIIKEYMGIQMSEEEQGFITLHIVNATMPQRSD 163


>UniRef50_A5KQG9 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
           27756 RepID=A5KQG9_9FIRM
          Length = 217

 Score = 62.5 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G I  +  + + ++    + E     + ++    + H+  A+ R +       LDN    
Sbjct: 3   GAIPPEYFELVEEIFEKAKEEYGFLPKEKETLALLDHIHFAIKRMKEN---LVLDNPFET 59

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           E+ Q     W+  +   + + + F +E+   E GY+  ++       +
Sbjct: 60  EIRQFYPKEWEIGLYAKKCIKRRFGIEIPDAEVGYIAMHIIASEFQKS 107


>UniRef50_C6DCM5 Transcriptional antiterminator, BglG n=7 Tax=Enterobacteriaceae
           RepID=C6DCM5_PECCP
          Length = 278

 Score = 62.1 bits (150), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  D      Q++ + +    L V+         H+  A+ R ++G+ I+ L   +L ++
Sbjct: 66  IPPDCLAVTQQIITLAQKTLRLNVQDTLFLALSDHINFAIQRHKKGQTIKNL---MLWDI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            Q   S +   ++   ++     +++   E G++  +L   
Sbjct: 123 RQFYHSEFAVGLEALALIRTRLGIDLPEDEAGFIALHLANA 163



 Score = 46.0 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/93 (10%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 21  GMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--S 76
            +  ++ +L+ + H+            +TH+    +R    E +   D+ +   + +   
Sbjct: 178 IIKDILTILKYDLHITFDEHSLNYQRLVTHLKFFALRLLNRETVSHGDDSIYQGITEMMP 237

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             +   ++++  + K +  ++   E  +L  ++
Sbjct: 238 RAYACAMKVYDYVEKNYGCQLTTDEIMFLTIHI 270


>UniRef50_A8SBZ8 Putative uncharacterized protein n=1 Tax=Faecalibacterium
           prausnitzii M21/2 RepID=A8SBZ8_9FIRM
          Length = 341

 Score = 61.7 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E +   L     +   + +   + +++   E  + + S+     + H++ AL R  +G  
Sbjct: 122 ELQTKFLKMLDNVTPQVMQAAER-ISLAAEEQGILLSSKSTISLVDHISFALERVEKG-- 178

Query: 62  IEPLDNELLAE--LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
              L N +L+E  +     +    +  +++ +   +++   E GY+  +L  
Sbjct: 179 -TFLPNLMLSETRMLYPKEYAVGQRALELVRQFCGVQLPEDEAGYIALHLVA 229


>UniRef50_C6IY31 Transcriptional antiterminator n=1 Tax=Paenibacillus sp. oral taxon
           786 str. D14 RepID=C6IY31_9BACL
          Length = 650

 Score = 61.7 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 1/105 (0%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
                 + + +  LE +  L    E     + H    + R++  + I     +    +  
Sbjct: 187 PHELDIVTRELKQLELDAQLAFTDEAFDNLLIHTLLMIRRTKLKQPIT-FSEQEKVFVRG 245

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
              ++      + L + FA+     E  YL A++ G  + +   +
Sbjct: 246 KPEFRWTGAFIRKLERFFAVRFPEDEVAYLTAHILGGKIRSRARI 290


>UniRef50_A4ILQ1 Transcription antiterminator n=10 Tax=Bacillaceae
           RepID=A4ILQ1_GEOTN
          Length = 298

 Score = 61.4 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           + ++    M +V+  ++    +P+          H+A  L R  +G +++   N  L E 
Sbjct: 83  LSEEFIALMNEVIQHIKQRVGVPLNEHIHVALTDHIAFTLKRLEQGLDVK---NPFLVET 139

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
                  ++   ++ +++  +  + +   E G++  +++      +
Sbjct: 140 KSLYPLEYEIAAEVAELIGDKLGVALPEGEVGFITLHIHSAISKQS 185



 Score = 42.5 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDN--ELLAELAQ 75
           + + ++V +++ +  + +  E       + H+  A+ R ++GE++E   N  ++L E A 
Sbjct: 194 QLIAKLVEIVKQQLGVDIDRESIHYLRFVRHLRYAIDRLKKGEKVEKPKNLSKILKE-AY 252

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +    +L +V+ +   L  +  E  YL  +L
Sbjct: 253 PLCYNLAWKLVKVMQQTLQLPADDAEAVYLTLHL 286


>UniRef50_C0ZH78 Probable transcriptional antiterminator n=2 Tax=Paenibacillaceae
           RepID=C0ZH78_BREBN
          Length = 285

 Score = 61.4 bits (148), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            +D  +     +++ ++ +E    +          H+  A+ R   G EI    N  L E
Sbjct: 76  QVDPAVVGIAEEIIALIASEITPELNEHVHVALPDHIQFAIYRLNNGMEIV---NPFLFE 132

Query: 73  LA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +    +  +    +   ++   F L++   E G+L  +++  
Sbjct: 133 IQTLYTKEYALANRAADMIKNAFDLDIPDSEIGFLALHIHSA 174



 Score = 55.6 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 20  KGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA--Q 75
             + ++V+++E +  + +   +      +TH+  A+ R R+ + I+   N LL  +    
Sbjct: 188 NIITELVSLIEEQTAITIERSTIDYVRLITHLRFAVERIRQQKFIK---NPLLDRVKTTM 244

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
              +Q   +L Q +     + V   E GY+  +LY L 
Sbjct: 245 PEAYQLATELAQYISTRLEIAVPEDEVGYMALHLYRLL 282


>UniRef50_C6IXJ3 Phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA
           2 n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14
           RepID=C6IXJ3_9BACL
          Length = 696

 Score = 61.4 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           ++    + +++   E +  +    E        +  +  R ++G  ++ L+ E  A L +
Sbjct: 189 EEELDSVYRIIVSTEQQIGMEWTDETILHLTLRIWLSANRMKQGRTVQ-LEEEEKAALRE 247

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           +  ++A  Q+   L + F L V   E GYL   L    +
Sbjct: 248 TLQFKAATQIADELGERFDLRVPEDEIGYLAIYLLAAKV 286



 Score = 41.3 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 22  MMQVVNVLETECHLPVRSEQGTM--AMTHMASALMRSRRGEEIE-PLDNELLAELAQSSH 78
             +V+++      +  ++ +  +     H+ S   R + G  I+ PL +++L E      
Sbjct: 305 TEEVIDLFAKNGCVYFQNREALVKQLFLHVKSMFYRIKYGLTIDNPLTDKILEEYR--EV 362

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           ++   +    L + F   +   E  YL  +  G       +
Sbjct: 363 YELTRKSASPLERLFEKPLGRHEIAYLTMHFGGWLKREQAK 403


>UniRef50_C2BXN0 Transcriptional antiterminator n=2 Tax=Bacilli RepID=C2BXN0_LISGR
          Length = 646

 Score = 61.4 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
              +ID ++   +  V+N+      L V   +      H+A A+ R ++   I    ++ 
Sbjct: 193 TTNIIDVNLLHSITNVLNIFIESTSLQVTEYEYQSLSIHLAIAIERIKKNFYI----DKK 248

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +A     S +     L ++L ++F +++   E  Y+  ++  +
Sbjct: 249 IAPANAPSKY--ATLLIELLEEKFQIQLPDYEREYIDIHILAI 289



 Score = 47.5 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 38  RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEV 97
             E     + H+ +A+ R +    I     E +     S  +   ++L   +   FA+++
Sbjct: 325 DEELINSLLVHLNAAVKRLKLEVSIHNPYTEEIKG-NFSGAFAISIELASAIEAGFAIKL 383

Query: 98  NPCEEGYLLANLYGLWMAANE 118
           N  E  ++  ++        +
Sbjct: 384 NEDEIAFITLHIQSFLDREAQ 404


>UniRef50_C5DAC1 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Geobacillus sp. WCH70 RepID=C5DAC1_GEOSW
          Length = 709

 Score = 61.4 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
           E  ++     K ++ ++N  E + ++    +              R  +G++IE  D   
Sbjct: 194 EQNMVILAELKCILNILNECEKDLNIQFADDVLHHLALRFWLFGKRIVQGKKIE-FDPIE 252

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
              + Q+  ++A  +  + L   F   +   E  YL  +L    +  
Sbjct: 253 KEVIQQTREFEAAKKASKKLESIFQTSIPDDEVYYLATHLLSTKVQY 299


>UniRef50_D1ALQ6 Transcriptional antiterminator, BglG n=1 Tax=Sebaldella termitidis
           ATCC 33386 RepID=D1ALQ6_SEBTE
          Length = 281

 Score = 61.4 bits (148), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +      ++V + E +  + +          H+  A+ R   G+ ++ +   L  E+
Sbjct: 68  IPAEYIDITEKIVKLAEEKLQMKLSDTIYITLSDHIYFAVKRFGDGQSLKNI---LFWEI 124

Query: 74  AQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
             S    +    +  +++     L +   E G++  ++    +  N
Sbjct: 125 KSSYKDEYLIGQEALKIIKDTVDLSLPDDEAGFIALHIVNAELNEN 170


>UniRef50_A8VWD6 Transcriptional antiterminator, BglG n=1 Tax=Bacillus
           selenitireducens MLS10 RepID=A8VWD6_9BACI
          Length = 287

 Score = 61.0 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           +++    + + +  +E+E  + +          H+A AL R+  G +I+   N  L E  
Sbjct: 72  NEERLLAVHEAIARIESEMAIRLPDSALFALTQHLALALQRTTDGTDIQ---NPFLLETK 128

Query: 75  --QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
                 ++   Q    L+KE  L +   E G++  ++      +  E
Sbjct: 129 WLYRDSYRLAEQAVHFLMKETGLSLPEAEIGFVTLHIQSALRDSGPE 175


>UniRef50_C9XN38 Putative transcription antiterminator n=6 Tax=Clostridium difficile
           RepID=C9XN38_CLODC
          Length = 293

 Score = 61.0 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 5/111 (4%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A  +D+   +   +++   E   +  +          H+A A+ R      I+   N+LL
Sbjct: 77  ASQVDEKFFEISTEIIAYAEENLNTKLYEYIYVALTDHIAFAIKRYHENITIK---NDLL 133

Query: 71  AELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            E+       ++        + KEF ++    E G++  ++       + +
Sbjct: 134 HEIKRIHKKEYEIGKWAVDYINKEFDVKFPVDEAGFIAMHIVNSNYKGSSK 184



 Score = 42.1 bits (98), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA--ELAQ 75
           I K ++ ++                   +TH+     R  + E+I   +NE++   ++  
Sbjct: 192 IVKDILNIIRYYYR-VEFKEDDINYDRLLTHLKFFAKRLVKKEKINDTNNEIIDIIKVKY 250

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +    ++   + K +   V+  E  YL  ++
Sbjct: 251 EKDYDCAYKIKTHVEKNYDYYVSQDELLYLTLHI 284


>UniRef50_C2HCM5 Transcriptional antiterminator n=17 Tax=Enterococcus
           RepID=C2HCM5_ENTFC
          Length = 306

 Score = 61.0 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 44/111 (39%), Gaps = 5/111 (4%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A  I  +  +   +++   +    + +          H+ +A+ R + G  +    N LL
Sbjct: 86  AQAIPLEYLEISCEIIEYTKEALQVQLNDSVYIALTDHLYTAIERHKMGIFV---PNVLL 142

Query: 71  AELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            ++ Q     +    +  + +  ++ ++++  E G++  +L       +++
Sbjct: 143 YDIKQLFHKEYAIGKKTVKKISDKYHIKLSEDEAGFIALHLVNAQGIQSQQ 193



 Score = 41.7 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 21  GMMQVVNVLETECHLPVRSEQGTMA--MTHMASALMRSRRGE--EIEPLDNELLAELAQS 76
            +  ++N++     +    +       +TH+   L R   GE  E+  +  EL   + + 
Sbjct: 202 TIQDILNIVRYYYKITFDEDSVHFFRFVTHLRFFLTRVLDGEKSEVGEVSEELFQVIQKK 261

Query: 77  --SHWQAVVQLHQVLLKEFALEVNPCEEGYLLAN 108
               +  V ++   L + F  +++  E+ YL  +
Sbjct: 262 YKDTFGCVEKIADFLAETFNYQMSTDEKMYLTIH 295


>UniRef50_C5F792 Putative uncharacterized protein n=1 Tax=Lactobacillus paracasei
           subsp. paracasei 8700:2 RepID=C5F792_LACPA
          Length = 651

 Score = 61.0 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +I  +  +    V++ L+    +     Q    + H+  + +R +  E +    +   A
Sbjct: 189 NLIGSETLRTAQAVLSELQRVTKIEFTEYQYQSLLIHICISTVRIQNAEYLPTWSSASQA 248

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
               S        L ++L + F ++V   E+ YL  ++     + 
Sbjct: 249 ---LSPETSI---LTRLLEEAFNIQVPKSEQEYLNIHILAAKQSK 287


>UniRef50_A8F9J0 Transcriptional antiterminator n=4 Tax=Bacillus RepID=A8F9J0_BACP2
          Length = 278

 Score = 60.6 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/106 (13%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +  D+ K   +++    T+ +  +          H+  A+ R ++   IE   N L+ E+
Sbjct: 66  VPYDVVKVTEEMIQYAHTKLNRRLNESLHVSLADHIHYAIERLKKNHLIE---NSLIWEI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            +     +       +++ +   +E+   E G++  ++    +  +
Sbjct: 123 KRLYKDEFLVAKDCLEMIEERLHIELPEDEAGFIAMHIINAELNED 168


>UniRef50_D1WYJ0 Transcriptional antiterminator, BglG n=3 Tax=Streptomyces
           RepID=D1WYJ0_9ACTO
          Length = 128

 Score = 60.6 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  R+ L  E G +  ++   +   +  LE E HL V      M  +H+  A+ R   GE
Sbjct: 5   LALRIQLFREGGQVKPEVADFVAAELAALEAEGHL-VTEATAAMLTSHLMMAVGRLLNGE 63

Query: 61  EIEPL--DNELLAELAQSS-HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            IE    D+++ AELA           +     +E    +   E  +L  +L  L
Sbjct: 64  PIEQFLTDDQVAAELADHPEAVVRARAVAARAERELGAALPESEINFLGMHLAVL 118


>UniRef50_A8RDI0 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM
           3991 RepID=A8RDI0_9FIRM
          Length = 309

 Score = 60.6 bits (146), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
            ++  K    ++     E ++  + +       H+  A+ R   G     L N +L E+ 
Sbjct: 94  PEEYFKLSQSIMEKAMEELNISFQDQTIIALTDHICFAVERYETG---TELPNLVLDEIK 150

Query: 75  --QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                 ++  +   + + +E  +++   E GY+  ++  
Sbjct: 151 TLYKEEFKIGLWSVKYINQELKIDLPIDEAGYIAMHIIN 189


>UniRef50_B6GAF6 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GAF6_9ACTN
          Length = 287

 Score = 60.2 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 11/97 (11%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA-- 74
           +       +++  E   H+ ++ +       H+  A+ R+R GE      N + +E+   
Sbjct: 79  EFFNISKSIMDEAEKRLHIVLKDQVLIALTDHIVFAVERARNGE---GFSNLMFSEVRGL 135

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
               ++  +    ++ +   + +   E  ++  ++  
Sbjct: 136 YRREYEIGLWGIHLVEEALGIRLPEDEASFIALHILN 172


>UniRef50_Q0TV06 Transcription antiterminator n=9 Tax=Clostridium perfringens
           RepID=Q0TV06_CLOP1
          Length = 282

 Score = 60.2 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D+       +++  +  +    +        + H++ A+ R ++GE    L N  L E+ 
Sbjct: 75  DEKFIAFCEELILEISRDFSEELNEIIHIGLIDHISFAIERMKKGEI---LRNPFLVEIE 131

Query: 75  --QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                 ++A  ++ + L     + +   E G++  +++   
Sbjct: 132 TLYPKEFEAATKMVKKLEDFTGVSIVDDEIGFIAMHIHSAR 172



 Score = 45.6 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 25  VVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAV 82
            V  +E   ++ V   S      ++H+  A+ R      ++     ++  L     ++  
Sbjct: 190 AVEYIEDAFNIEVDRTSLSYARFISHLRFAIERLINNTPVKNELLSIIK-LKYPESFKVA 248

Query: 83  VQLHQVLLKEFALEVNPCEEGYLLANL 109
            ++ + + ++F+LEV   E GYL  ++
Sbjct: 249 EEIGKAINEDFSLEVAEDEIGYLALHV 275


>UniRef50_C0QXV4 Transcriptional antiterminator , BglB n=1 Tax=Brachyspira
           hyodysenteriae WA1 RepID=C0QXV4_BRAHW
          Length = 620

 Score = 60.2 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 6   NLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
           + L E  +      + ++ ++     +  +          + ++  ++ R +    I   
Sbjct: 165 DFLYENNM-----NEKLIGIIINFLNKYEIKFSEINLENFIQYINVSISRIKNNNFICSY 219

Query: 66  DNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           + +++ ++  S   +   +L + +  E  +E N  E  ++  ++    +
Sbjct: 220 EKDIIKDI--SEEIRLSEELIKQIQNEIDIEFNDTEIIFIAIHIASKNL 266


>UniRef50_A4W4E8 Transcriptional antiterminator n=1 Tax=Streptococcus suis 98HAH33
           RepID=A4W4E8_STRS2
          Length = 392

 Score = 60.2 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 2/101 (1%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNE 68
            E  ++       +M +V     +  L +        + H+A  L R + G  ++     
Sbjct: 185 VETNLLPDIRFTDLMLIVLDECRDAKLRLSDFVMQNLVLHIALLLQRLKIGSGLDRFP-- 242

Query: 69  LLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +   +  S  +    ++   + + F + +   E  Y+  +L
Sbjct: 243 IPERIQSSQEYLVAQRIIDRIEETFQVTIPSEEANYIALHL 283


>UniRef50_C3RIK3 Predicted protein n=3 Tax=Bacteria RepID=C3RIK3_9MOLU
          Length = 226

 Score = 60.2 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +  ++     +  L +          H+  A++R +    I P+ N  +A   Q   +  
Sbjct: 18  ITNIIKNTADDYDLFLSENSINNLSVHLTIAIIRIKSNNYI-PMSNSQIASYKQDHSYPY 76

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
              L   L +EF ++    E       L  ++++ N+++
Sbjct: 77  AKMLCDRLAREFEIDFPEAEIS-----LVSMYLSKNQKL 110



 Score = 40.9 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 5/121 (4%)

Query: 2   ETRLNLLCEAG--VIDKDICKGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSR 57
             +L+L   +G  ++D  + K + + +  +  + H       +       H+  AL R  
Sbjct: 107 NQKLDLEINSGFDLLDDQVFKILRETMYTIYQDYHKDFRNDDKLFVAIGLHLEPALERLA 166

Query: 58  RGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            G+ +E    E + E      +     L+ V+  +  L  +  E  ++  +        +
Sbjct: 167 NGQLVENPLKEKIIE-RHQEEFNYSKILNDVVRHDLNLSFDDDELAFIALHFVVANNRID 225

Query: 118 E 118
           E
Sbjct: 226 E 226


>UniRef50_C3RJ23 Predicted protein n=2 Tax=Bacteria RepID=C3RJ23_9MOLU
          Length = 613

 Score = 59.8 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 1/104 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            +D DI + +  +V          +  +     + H+  A  R  + E    +D+E L E
Sbjct: 160 QMDFDILQRIRDIVISSIANADYVISDDVLDNLVAHLYIAYYRVMKKEYAN-IDSEWLEE 218

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
           + +   +     + +++ K  A+E    E  YL  +L G     
Sbjct: 219 IKEEKEYSLGCAIMELMNKIMAMEYRIEEVAYLTMHLCGKNSKQ 262



 Score = 40.6 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMT--HMASALMRSRRGEEIEPLD 66
                I+++I   + +++ ++E   ++P +++         H+   + R + G     + 
Sbjct: 263 LSNNYINQEILDIVKEMLMIIEKVANIPFQADLNLQLALSLHLIPLVKRIQYG---TFMH 319

Query: 67  NELLAELAQSSH--WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           N L  E+       ++  V+   V+ + F   ++  E  Y   ++  L +   +
Sbjct: 320 NPLKDEIKSKLIMAYELAVKACVVINQRFNCTLSEDEIAYFALHI-NLSLEQKK 372


>UniRef50_C2BGB6 BglG family transcriptional antiterminator n=2 Tax=Anaerococcus
           RepID=C2BGB6_9FIRM
          Length = 698

 Score = 59.8 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 1/107 (0%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           +N L +  +  K     ++ ++     E  + V        + H A  + R +    I+ 
Sbjct: 220 INELEDLNLFHKATISQLLIILLDEIREYGISVNDYAIQNLVIHFALVIERVKINCLIDN 279

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            D ++               + + + K FA+++   E+ Y+   L  
Sbjct: 280 YDKDIAKG-EGDEFLDFAKSVIRRISKSFAIDLPIEEKKYIYLQLLS 325


>UniRef50_B1IKY9 Transcriptional antiterminator, BglG family n=12 Tax=Clostridium
           RepID=B1IKY9_CLOBK
          Length = 285

 Score = 59.8 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 38/100 (38%), Gaps = 1/100 (1%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +D DI     +V++++  E + P+  +       H++  + R      IE     +  E 
Sbjct: 74  VDSDIIGLCEEVISMISDELNEPLNEKIHVSLTDHISYTIKRLMENNSIEN-PFLVETET 132

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                +    +  ++L     L +   E G++  +++   
Sbjct: 133 LYKREFAIAKKAVRMLEDRLNLVIPDEEAGFITLHIHSAR 172



 Score = 49.8 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 25  VVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS--SHWQ 80
           ++ +LE E ++ +          +TH+  A+ R      I+   NELL  +       ++
Sbjct: 190 IIELLEDELNMEIDKSSLDYARFLTHIRFAIERILNNTPIK---NELLTAIKNQYKISYK 246

Query: 81  AVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              ++ +++  E ++ V+  E  Y+  ++
Sbjct: 247 LAKKVSKIIEDELSVNVSKEETAYIAIHI 275


>UniRef50_B6FWC4 Putative uncharacterized protein n=2 Tax=Clostridium
           RepID=B6FWC4_9CLOT
          Length = 985

 Score = 59.8 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E R  +   +  ++ +    M +V+ V++ +    V +    +  TH+  A+ R R  + 
Sbjct: 488 ENRKKIHIMSENLNPETINIMNKVITVIKNQYRF-VNNGLYMVLATHIEEAIKRVRNEKN 546

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           I     + + E   S  +     +  ++     + +   E GY+   +Y
Sbjct: 547 IINPSLDNIKE-NMSEEYDLARYVVTIIENIAKISLPEDEIGYIAYYIY 594


>UniRef50_P26212 SacPA operon antiterminator n=9 Tax=Bacillus RepID=SACT_BACSU
          Length = 276

 Score = 59.8 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             + ++  +    +++  E E   P+          H++ A+ R + G  ++   N+LL 
Sbjct: 61  QTLPEEHIEIAEDIISYAEGELAAPLSDHIHIALSDHLSFAIERIQNGLLVQ---NKLLH 117

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           E+       ++  +     + +   + +   E GY+  +++   M
Sbjct: 118 EIKALYKKEYEIGLWAIGHVKETLGVSLPEDEAGYIALHIHTAKM 162



 Score = 53.3 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 21  GMMQVVNVLETECHLPVRS--EQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--S 76
            + +++  ++   +  V          +TH+  A+ R    E +  +D E+L  + +  S
Sbjct: 176 MIKEMIEKIKQYFNRKVDENSISYQRLVTHLRYAVSRLESNEALHRMDEEMLYFIQKKYS 235

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             +Q  ++L + L  E+ L +   E GY+  ++
Sbjct: 236 FAYQCALELAEFLKNEYQLHLPESEAGYITLHV 268


>UniRef50_A4J1C8 Transcriptional antiterminator, BglG n=2 Tax=Clostridiales
           RepID=A4J1C8_DESRM
          Length = 282

 Score = 59.8 bits (144), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 5/108 (4%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L     +D  +      ++ + + +    +          H+   L+R  +G EI+   N
Sbjct: 67  LALMEQVDPAVINVTQNIIELAKAQLGEGLHPRVHVALADHINFTLIRLAQGMEIK---N 123

Query: 68  ELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
             LAE+       +    Q   ++L++  + + P E G++  +L+   
Sbjct: 124 PFLAEIEAMYPKEFSIAKQGAVLILEKMNIFIPPEEIGFIALHLHSAR 171



 Score = 50.6 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 20  KGMMQVVNVLETECHLPVRS--EQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
           + + + V  +E++          + T  ++H+ S + R      IE    + L +   S+
Sbjct: 184 EVINRAVKYIESQFGPIKEHGGLEYTRLLSHLQSCIHRLVNKTTIENPFLDKLKQ-EFSN 242

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            ++   Q+  +L +   + V   E GYL  ++
Sbjct: 243 SYEIARQMSNILEEGLGIPVPEDEIGYLAMHI 274


>UniRef50_B4F212 Transcriptional antiterminator n=14 Tax=Bacteria RepID=B4F212_PROMH
          Length = 284

 Score = 59.4 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 45/111 (40%), Gaps = 8/111 (7%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           L+LL     I  D  +    ++   + +  L  +       + H+ +++ R + G  I  
Sbjct: 60  LDLLSN---ITLDYVEIADNIIQYAKEKMTLDTQDSIYIALIDHIQASIERYKEGTFIR- 115

Query: 65  LDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
             N++L E+    S  +   +   +++   F + +   E G++  ++  + 
Sbjct: 116 --NKILWEIKNFYSEEFDIGLYGLKLINDRFNISMPEDEAGFIALHIASIR 164


>UniRef50_B0K352 Transcriptional antiterminator, BglG n=9 Tax=Thermoanaerobacterales
           RepID=B0K352_THEPX
          Length = 275

 Score = 59.4 bits (143), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            ++        I  D+     +++ + E      +          H+A A+ R   G EI
Sbjct: 56  NKIKFSELMEKIRGDVIGIAEEIIAMAEKIKGKKLNEHIHIALADHIAFAIERINMGIEI 115

Query: 63  EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           +   +  +  L +   +   ++  +++ +   + +   E G++  +L+   
Sbjct: 116 KNPFDIEIKALYKDD-YNIALKALELINQRLNISLPEDEAGFIALHLHAAL 165



 Score = 46.7 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 7/94 (7%)

Query: 20  KGMMQVVNVLETECH--LPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS- 76
           + + Q+V+ +E      +   S      +TH+  A+ R  +   +    NELL  + +  
Sbjct: 178 RLVSQLVSTIEKHLGKYIDRDSIDYIRLVTHLRFAIDRVEKNAPVT---NELLVSIKKKF 234

Query: 77  -SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +   +Q+ +++      +V   E GY+  ++
Sbjct: 235 KKAYNIAMQVSKIIEDTLQKKVPEEETGYIAIHI 268


>UniRef50_Q2BFG3 ManR n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BFG3_9BACI
          Length = 645

 Score = 59.4 bits (143), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 11/108 (10%), Positives = 32/108 (29%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +        + + +  ++    +    E     + H    + R+R+   +  ++   + 
Sbjct: 184 DLFQPYEIDIVRKALKEIQNNESIRFTDEALDSLVVHALIMIKRTRQRAPV-FVEPAEME 242

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           ++A    ++        L   F L     E  Y   +      +   E
Sbjct: 243 KIALRKEYEYASAFFTRLADSFQLSFPEAEIVYYTWHFISAKRSEEAE 290



 Score = 44.0 bits (103), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 10  EAGVIDKDICKGMMQVVNVLETE---CHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLD 66
           E+ +I  +  + ++Q++     +             +    HM S + R   G  I    
Sbjct: 290 ESALIQDEKAEHVVQLLIERMEKLTLFPFGNDHILASGLAVHMHSVISRIHYGFPIT--- 346

Query: 67  NELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           N LLA + +     +  V+     + + F + +   E  Y++ + 
Sbjct: 347 NPLLANIKRMYPYMFSMVILALDDIREGFHISIPEDEAAYIVLHF 391


>UniRef50_A6M213 Transcriptional antiterminator, BglG n=8 Tax=Clostridium
           RepID=A6M213_CLOB8
          Length = 284

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +D++      ++++ +  E    +        + H+  A+ R    EEIE   N  L E+
Sbjct: 73  VDEEFFVLCEKMISYVANELKENLDERIHVALVDHLNFAVKRLSDKEEIE---NPFLMEI 129

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
                  +    ++ +VL  E  +++   E G++  +++    +  
Sbjct: 130 RALYPQEYSLAEKVAEVLQNEKKVKIPEGEIGFIALHIHSARNSGK 175



 Score = 41.3 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 7/94 (7%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS- 76
             +  ++  +E +  + +          +TH+  A+ R      IE   N+ + E+    
Sbjct: 184 HLINSIIEYVEAKTEIKIDKTSLDYARFLTHLRFAIKRILDDISIE---NDFIKEIKSKY 240

Query: 77  -SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              ++    + ++L+ +   +V+  E  YL  ++
Sbjct: 241 KLSYKVSKGVAKILVLKLEKKVSDDEIAYLAMHI 274


>UniRef50_Q184U4 Putative transcription antiterminator n=5 Tax=Clostridium difficile
           RepID=Q184U4_CLOD6
          Length = 514

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
             + + Q+           +  E     + H+A  + R      I  L      EL +  
Sbjct: 202 DFEKLSQITLHTLQVEKSNLSDEYYINFLIHIAICIKRISIKRYIN-LSEGFFRELLEHE 260

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +++    L   L + F +E    E  Y+L ++ GL  +  +
Sbjct: 261 YFEKSKILCANLSEAFDVEFIDEEVCYILLHIEGLLKSIKK 301


>UniRef50_B1YKV9 Transcriptional antiterminator, BglG n=2 Tax=Exiguobacterium
           RepID=B1YKV9_EXIS2
          Length = 285

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G +D++    M ++V+++ET     V          H+     R  +G E+    N  LA
Sbjct: 70  GHLDENFIALMNEIVSMIETRFGKRVDEHIHIGLTDHLTFTFKRLEQGMEVT---NPFLA 126

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           E        +    ++ + +  E    + P E G++  +++  
Sbjct: 127 ETEALYPEEYALAEEIVEFISAEMNFYLPPAETGFIALHIHSA 169



 Score = 42.9 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 25  VVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLD--NELLAELAQSSHWQ 80
           + + +E    + +  +       + H+ SA+ R   GE +E  +   +LL E      + 
Sbjct: 188 IASHIEQRLQIKIDRKSLDYKRLIRHLRSAIERVSNGEYLEAPEKVEKLLRE-EYPLCYD 246

Query: 81  AVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +L  ++ ++    V   E  YL  +L
Sbjct: 247 TAWELMSIMERQLKKAVPRGEATYLTMHL 275


>UniRef50_B0MGK7 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=B0MGK7_9FIRM
          Length = 507

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIE-PLDNELLAELAQ 75
              + Q++  +E     P   ++      M H+  AL R R G  +  PL++++      
Sbjct: 312 LDLVTQLIARVEERFGFPYSEDENLAENLMLHINMALERIRSGMNVSNPLNDDIYQS--H 369

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
              +  V Q    +    ++ V   E GY++ 
Sbjct: 370 PKLYDIVKQSFIEVFNHTSVPVPDDEIGYIVI 401


>UniRef50_A6TMP5 Transcriptional antiterminator, BglG n=1 Tax=Alkaliphilus
           metalliredigens QYMF RepID=A6TMP5_ALKMQ
          Length = 163

 Score = 59.1 bits (142), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
            +I     +++ + E +    +  +  T  + H+  A+ R + G  I    N  L E   
Sbjct: 59  DEIVGVSEEIIVMAEKQLGESLGDKVHTGLIDHIHFAINRIQEGINIS---NPFLNETKA 115

Query: 76  --SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                +    Q   +L     ++V   E G++  ++  
Sbjct: 116 LYPVEFSIASQAVALLCVRLGIDVPQDEIGFIALHIRA 153


>UniRef50_C0D1K5 Putative uncharacterized protein n=2 Tax=Clostridium
           RepID=C0D1K5_9CLOT
          Length = 273

 Score = 58.7 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L     ID    +   +++   E     P+R +       H+A A+ R++ G E   L N
Sbjct: 60  LQAVNGIDPVYIEVTARIIEAAEGLLG-PIRHDILIAMADHIALAVSRAKEGCE---LPN 115

Query: 68  ELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
               ++    S  ++A ++  +++ +E  +E++  E  Y+  +++G
Sbjct: 116 PFSQDIRALFSQEYEAALKGRELIRQELGVEISEDEVSYITLHIHG 161



 Score = 42.1 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
             ++ + +   +  +E    + + +        M+H+   + R+R+ E+   L+    A 
Sbjct: 171 SLELARLVQDGIRQVEEGMGMTLPAASLGYNRLMSHLRYMIARTRKKEQ-TNLNMGDYAR 229

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                 ++   Q+ + + ++    V   E G+L  ++
Sbjct: 230 ENFPRAYEVAAQVCEDIGRKLKCPVAQEEIGFLAIHI 266


>UniRef50_O07655 Antiterminator homolog n=16 Tax=Enterobacteriaceae
           RepID=O07655_ECOLX
          Length = 293

 Score = 58.7 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 44/110 (40%), Gaps = 1/110 (0%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           E +  L      +D +      ++V   E      +      +   H+++A+ R   G +
Sbjct: 71  EQKNKLYKLIEHVDIEYVSVAEKIVQYAEKNLEKNLNPSLLLILADHISNAISRVVSGIQ 130

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           I  +  + +  L ++  +        ++ ++F++++   E G++  ++  
Sbjct: 131 INNVFLDEIKALYKA-EYAISRDALTIINEQFSVQLPDDEIGFIALHILN 179


>UniRef50_Q03E27 Transcriptional regulator with AAA-type ATPase domain and a
           DNA-binding domain n=29 Tax=Bacilli RepID=Q03E27_PEDPA
          Length = 976

 Score = 58.7 bits (141), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A ++DK I     QV   +E +     +         H++S + R + G+ +  + N+L+
Sbjct: 486 AEIVDKGIIDFAKQVQPKIENQLDYHFKENFIYAMSLHISSFIKRIQSGKPMRLMGNDLV 545

Query: 71  AELAQ-SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           A +            + ++L + + + +   E  YL   L  L 
Sbjct: 546 AMVKDYPEELAVAKSIKEMLEQRYGMPIPESESYYLAVLLISLR 589



 Score = 42.1 bits (98), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
             +   V+ L     +          + H+A A+ R      +E    E LA +     +
Sbjct: 873 DILWNYVDYLAETKKVEFSESFRINLIMHIAGAVERMLTNNPMETAPEE-LAAVQDEVWF 931

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLL 106
           + + +     L+   +E+ P EE Y+ 
Sbjct: 932 KLIQKADDKYLRRIQIEMTPSEEFYVY 958


>UniRef50_B7GIF9 Transcriptional antiterminator n=3 Tax=Bacillales
           RepID=B7GIF9_ANOFW
          Length = 281

 Score = 58.3 bits (140), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +D++    M  +++ ++   +  +          H+  A+ R  +G +I+   N  L E 
Sbjct: 70  VDEEFIGLMNDIIHHIQKRTNSSLNEHIHVALTDHILFAIKRLEQGMDIK---NPFLVET 126

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
                  +    ++  +L +   +++   E G++  +++       
Sbjct: 127 KSLYPLEYDVATEVVNMLNERLRIQLPEGEIGFIALHIHSALTNHQ 172



 Score = 39.0 bits (90), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLD--NELLAELAQ 75
           + + ++V+V+E +  + +  E       + H+  A+ R ++GE++E     + +L E   
Sbjct: 181 QLISRLVSVVEKQLDIRIDRESIHYLRFVRHLRYAIERVKKGEKMEEPKKLSNILKE-TY 239

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +    +L +++ +   L V+  E  YL  +L
Sbjct: 240 PLCYNLSWKLIKIMQQTLQLPVDEAEAVYLTLHL 273


>UniRef50_P15401 Levansucrase and sucrase synthesis operon antiterminator n=2
           Tax=Bacillus subtilis group RepID=SACY_BACSU
          Length = 280

 Score = 58.3 bits (140), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             + +D  +   Q+++  E E ++ +          H++ A+ R   G  I+   N LL 
Sbjct: 63  ETLPEDHIQISEQIISHAEKELNIKINERIHVAFSDHLSFAIERLSNGMVIK---NPLLN 119

Query: 72  ELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           E+       +Q  +    ++  +  + +   E G +  +++   
Sbjct: 120 EIKVLYPKEFQIGLWARALIKDKLGIHIPDDEIGNIAMHIHTAR 163



 Score = 50.6 bits (120), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 34  HLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--SSHWQAVVQLHQVLLK 91
           ++   +      +TH+  A+   + GE I  LD E++  + +     +   + +   + K
Sbjct: 193 NIVEDTISYERLVTHLRFAIQHIKAGESIYELDAEMIDIIKEKFKDAFLCALSIGTFVKK 252

Query: 92  EFALEVNPCEEGYLLANL 109
           E+  E    E  Y+  ++
Sbjct: 253 EYGFEFPEKELCYIAMHI 270


>UniRef50_B0K7D9 PTS system transcriptional activator n=12 Tax=Clostridia
           RepID=B0K7D9_THEP3
          Length = 979

 Score = 57.9 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 14  IDKDICKGM--MQVVNVLETECHL------PVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
           I K   KG+   ++V   E    +       +          H+++   R   G+ I  +
Sbjct: 485 ISKKDLKGIVGEKIVEAAEKAYEIAKKSFSRLEENLFYSLAIHLSATYERILSGKPI--I 542

Query: 66  DNELLAELAQSS-HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           + +L   + +    +     + + + +E  +E+   E G++   L  
Sbjct: 543 NPQLENIIREYPAEYSTAKIMAKQIERELGIELPEEEIGFIAMYLRT 589


>UniRef50_C5RLN3 Transcriptional antiterminator, BglG n=1 Tax=Clostridium
           cellulovorans 743B RepID=C5RLN3_CLOCL
          Length = 280

 Score = 57.9 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 11/106 (10%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA-E 72
           +D  +     + ++ +       +        + H+A  + R + G  I+  +  L   +
Sbjct: 71  VDSSLIGATEEAISYISKVTESDLGKIIHITLLDHLAFTIERIKNG--IKIGNPFLYETK 128

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +     +     + +++     LE+   E G++  +++        
Sbjct: 129 VLYEKEFSIAEDVLEIINDRMNLELPKAEVGFIAMHIHAALNNQKS 174



 Score = 53.3 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 21  GMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS-- 76
            + +++ V+E   ++ +  E       +TH+  A+ R  +   IE +   LL  +     
Sbjct: 183 IIQEMITVIENNLNILIDRESISYMRLLTHLRFAIDRINKKLPIENI---LLDSIKTQLK 239

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
             +   + +   + + F L +   E GY+  ++  + +   
Sbjct: 240 DSYMVAIAVADYVKENFNLVMPEEEIGYIAVHIGNIKLRQK 280


>UniRef50_C7UQ76 Predicted protein n=3 Tax=Firmicutes RepID=C7UQ76_ENTFA
          Length = 285

 Score = 57.9 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           + + + +  ++   E               + H+  AL R ++G+ I    N LL E+ +
Sbjct: 67  ESLFEIVRSIILRAEELFQKKATDYLYLTLLDHIDYALKRGKKGQYIS---NPLLWEVRR 123

Query: 76  --SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
                +Q  V++ + L KE+ +     E   +  +L  +
Sbjct: 124 YYPKSYQLGVEVVERLNKEYNVSFPEDEAASIALHLVNI 162



 Score = 44.8 bits (105), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 47/100 (47%), Gaps = 4/100 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++ + + M  +V++++     P+  E    T  M H+   + R    +     D+EL  +
Sbjct: 172 NEKVTEIMKDIVSIVQYHLGAPMNHESINYTRFMQHLQYFVQRILTNDTYSENDSELYQQ 231

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           ++Q     + AV ++   ++  F   ++  E+ YL+ +++
Sbjct: 232 ISQLYPEAYGAVKKIELYVIGTFGKLISEDEKTYLMMHIH 271


>UniRef50_P26211 Beta-glucoside operon antiterminator n=72 Tax=Bacteria
           RepID=ARBG_ERWCH
          Length = 283

 Score = 57.9 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  RL+ + E   I  ++     +++ + + +    +++        H   A+ R R+G 
Sbjct: 55  LTARLSDVLER--IPLEVVTTADRIIALAKEKLGGNLQNSLYISLTDHCHFAIERHRQGV 112

Query: 61  EIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           +I    N L  E+ +     +   +    ++ +   + +   E G++  +L    + ++
Sbjct: 113 DIR---NGLQWEVKRLYQKEFAIGLDALDIIHRRLGVRLPEDEAGFIALHLVNAQLDSH 168


>UniRef50_A6VMZ3 Transcriptional antiterminator, BglG n=1 Tax=Actinobacillus
           succinogenes 130Z RepID=A6VMZ3_ACTSZ
          Length = 280

 Score = 57.9 bits (139), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I ++  +    VV+    +    + +        H+  A+ R+++ + +    N LL E+
Sbjct: 67  IPQEYFQLTNCVVDFANQQLGTTLSNSIFVSLPDHIFHAVERAKQNQTV---PNGLLFEI 123

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
            +     +   +   Q++ K F +++   E G++  +++      + 
Sbjct: 124 QRLYKQEFAIGLYTLQLIEKRFGVQMTEDEAGFIALHIFNARTDGST 170



 Score = 38.6 bits (89), Expect = 0.066,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGT--MAMTHMASALMRSRRGEEIEPLDNELLAE--LAQ 75
           + +  ++N++    +L +          +TH+     R     E    D+ L  +  +A 
Sbjct: 179 QMIKDILNMVGYHFNLVLDENSYDYARFLTHLQHFAQRFFVNSEPASGDDFLYRQTKIAY 238

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
              +Q V ++++ L   +   +N  E+ YL+ ++  +     
Sbjct: 239 PKAYQCVEKINKYLTANYHKPLNEDEQLYLMIHIRRIISHQQ 280


>UniRef50_C9ADA7 Transcription antiterminator n=1 Tax=Enterococcus casseliflavus
           EC20 RepID=C9ADA7_ENTCA
          Length = 669

 Score = 57.5 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 31  TECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLL 90
            +  L +        + H+  A+ R + G EI+    E  A LAQ   +Q+ +++ + + 
Sbjct: 202 RKYFLKLSDFMIYTIVLHIGLAIKRLQAGFEIQLHPQE--ANLAQEVEYQSALEIVEKIR 259

Query: 91  KEFALEVNPCEEGYLLANLYGLWMAAN 117
           ++  + + P E  Y+  +L    ++  
Sbjct: 260 QQMGIVLPPEEAFYIAIHLKNKLVSET 286


>UniRef50_O31691 PtsGHI operon antiterminator n=87 Tax=Bacillaceae RepID=GLCT_BACSU
          Length = 281

 Score = 57.5 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +D+ +      V+  +    +  +          H+A A+ R ++G +   + N  L E 
Sbjct: 70  VDEKLVDISNDVIYHISNRTNHSLNEHIHIALTDHIAFAIKRQQQGFD---MKNPFLMET 126

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                  +Q   ++  ++ ++  L +   E G++  +++   
Sbjct: 127 QSLYPEEYQIAKEVIDMINEKAGLCLPEGEIGFIALHIHSAL 168



 Score = 43.3 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDN-ELLAELAQS 76
           + M Q+V V+E    + V  E       + H+   + R ++ E  +  +   LL +    
Sbjct: 181 QLMAQLVEVIEDSFQMKVNKESVNYLRLIRHIRFTIERIKKEEPTKEPEKLMLLLKNEYP 240

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
             +    +L ++L +     V+  E  YL  +LY L    +
Sbjct: 241 LCYNTAWKLIKILQQTLKKPVHEAEAVYLTLHLYRLTNKIS 281


>UniRef50_D2EH42 Transcription antiterminator licT n=1 Tax=Pediococcus acidilactici
           7_4 RepID=D2EH42_PEDAC
          Length = 283

 Score = 57.5 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +  +      +++++   E  + +          H+   + R  +G+    + N  L 
Sbjct: 64  NEVTSEELLVTSKIISMARQELKVKLSESIYISLTDHIHYVIERYHQGKL---MTNTFLW 120

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           ++ +     ++  ++   ++ K+F +++   E GY+  +    
Sbjct: 121 DIKRYYPKEFEVALKAVHLINKKFNIKLKDDEAGYIAFHFINA 163


>UniRef50_UPI0001692E24 transcriptional regulator n=1 Tax=Paenibacillus larvae subsp.
           larvae BRL-230010 RepID=UPI0001692E24
          Length = 691

 Score = 57.5 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 1/108 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +I +D  + +   +  ++ E   P         M ++A  L R   G+E+  LD     
Sbjct: 189 DLIARDKLEMIDSALGEIDKELMAPFADTSYLYFMVYLALMLKRLELGQELS-LDATSKE 247

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
              ++  +    ++ + + + F +E+   E       +    +    E
Sbjct: 248 AAKRAPEYNVAEKIFRHIAETFGVELPEDEACGFTPYIKSGKLRKPSE 295



 Score = 41.3 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 17  DICKGMMQVVNVLETECHLPV-RSEQG-TMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           ++   + ++V+  E + H  +          ++H+  ++ R R    ++   N  L ++ 
Sbjct: 304 ELSTLVYELVSYCEQKLHADLLSDRNLMQGLVSHLEPSIYRIRENIIVQ---NPYLDQIR 360

Query: 75  QSSHWQAVVQLHQVLLKEF--ALEVNPCEEGYLLANLYGLW 113
               +  V Q+ +  + +    ++V   E G+L+ ++    
Sbjct: 361 SD--YAHVYQIVEEAVHQVMPQVKVPDDEIGFLVMHIAASL 399


>UniRef50_UPI0001788D94 transcriptional antiterminator, BglG n=1 Tax=Geobacillus sp.
           Y412MC10 RepID=UPI0001788D94
          Length = 696

 Score = 57.1 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 43/102 (42%), Gaps = 1/102 (0%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
            + + ++++  E    + +  E            + R +  + +  +D++  + L ++  
Sbjct: 195 LEQVYRLISDSEITLGVDLTDEMLFHLTARFLLYVRRIQTAQWVS-IDDDERSVLRRTPE 253

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           ++A  ++ + L + F + V   E  Y   +L G  +   E++
Sbjct: 254 YEAAARIAEGLGQMFGVSVPDDEVCYFAMHLLGARVNRMEQM 295



 Score = 44.0 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 11/113 (9%)

Query: 15  DKDICKGMMQVVNVLETECH------LPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNE 68
            +++ K +  V   +           LP R       + H+  A  R   G     L+N 
Sbjct: 298 SEEVLKQLRNVTTEMTDHFQRYACVFLPNREAMEENLLVHLKPAYYRILYG---LSLENP 354

Query: 69  LLAELAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           LL  +       ++   +      +    +++  E GYL  +  G     N +
Sbjct: 355 LLENIRSKYGEVFELTRRSAAPFEQLVGRKLDDHEIGYLAMHFGGWLRRENTK 407


>UniRef50_B0PCB1 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0PCB1_9FIRM
          Length = 305

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ- 75
           +  +   +++          +          H++ +++R R+        N LLAE+ + 
Sbjct: 96  EHIEVTNRIIAYARKILGKRLNHSIYITLTDHISFSVLRFRQNMM---FHNALLAEMRRF 152

Query: 76  -SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
               +        ++ KE  +     E   +  ++   
Sbjct: 153 YPQEYSIGQYALDLIAKELGVRFPDDEAASIAMHIVNA 190


>UniRef50_C8P1J6 Putative uncharacterized protein n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P1J6_ERYRH
          Length = 641

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 2/100 (2%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
              + +++     +  L +          H+  AL R  +G+    L N   +    S+ 
Sbjct: 192 MDIIERIIVTCIQKYQLHLTDIGFKNLSIHIEIALTRIEQGKL--GLSNTTTSINTDSNA 249

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
           +     L  +L +   L++   E   +  +L        +
Sbjct: 250 YLCAEALAVMLEEALTLKIPESEIINIYIHLSSQKKLHTD 289



 Score = 44.4 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNELLAE 72
                + + + ++ +        R ++      MTH+ SAL R   G  I    NELL E
Sbjct: 297 SPHNLQILNEALDDIYRIYGSDFRHDEILKQGLMTHLESALKRIELGLSIR---NELLDE 353

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           + +      Q    L    LK  A+  N  E G+L  +  G    A ++
Sbjct: 354 IEKNYPFEIQIAKVLAFHFLKTNAIAFNLDEVGFLALHFCGARERARQD 402


>UniRef50_B1CBZ7 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1CBZ7_9FIRM
          Length = 716

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHW 79
           + ++  +  LE E       E  +  + H++  + R  R   ++ +  E    L  S  +
Sbjct: 206 EFLIGQIQHLEKELGEIFSDETFSSLLIHLSIIVYRVSRNCSLKEITGET--TLNNSIEY 263

Query: 80  QAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
               Q+ + +   F + +   E  Y   +L G  +
Sbjct: 264 TLTSQIIENINTRFTITIPSEEIYYFTVHLLGAKV 298



 Score = 38.6 bits (89), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLA 71
           +I ++I   M++ +  L        + +     +TH+   + R +  + I  P+  E+  
Sbjct: 313 IIIRNIATKMVEEIGNLYAVDFKEKKEDVIDGLITHLIPTVYRIKYKKRILNPIYPEM-- 370

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           E   S        + + L +    E+N  E  Y+  +      +   E
Sbjct: 371 EQKYSDLLGNTKIVCRHLSEYCKEEINEQEVSYIAMHFLAALHSKLNE 418


>UniRef50_C6PVA3 PTS system transcriptional activator n=1 Tax=Clostridium
           carboxidivorans P7 RepID=C6PVA3_9CLOT
          Length = 915

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++DK I   + + +++   +       +       H++S++ R    +    L N  L E
Sbjct: 451 IVDKRIINIVEKFLDIASKKMKKVFPVKIFYGLCLHISSSIERIIHNKN---LINHNLNE 507

Query: 73  L--AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           +       ++  + L   L  EF +++   E  ++   L 
Sbjct: 508 IVEKDREEYKLALILVDKLEDEFNIKIPSEEIEFIAMFLC 547


>UniRef50_C0CT65 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0CT65_9CLOT
          Length = 281

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
            +      +++ ++    H  +        + H++  L R + GE+I    N  L+E+  
Sbjct: 72  PEFVDFCEELILLIARSFHEELHETIHISLIDHISCTLRRLKLGEQIV---NPFLSEIEA 128

Query: 76  --SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                +Q   ++ + + + + + +   E G++  +++   
Sbjct: 129 LYDQEFQIAGEVCRRIEERYDVSMPEGEVGFIALHIHSAR 168


>UniRef50_A7GGX3 Transcriptional antiterminator, BglG family n=12 Tax=Clostridium
           RepID=A7GGX3_CLOBL
          Length = 275

 Score = 57.1 bits (137), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE- 72
           ID  I     +++N  E   +  +          H+  AL R  +G  IE   N  L E 
Sbjct: 68  IDNKIVGISEEIINFSEKALNTKLNEGVHISLPDHINFALRRIEKGINIE---NPFLEEL 124

Query: 73  -LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +     ++  ++   ++ +   + +   E G++  ++  
Sbjct: 125 GIIYPKEYEIAMKALNMINERLKVNLPKDEAGFICLHIRA 164



 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLAELAQSS 77
              +M++++ L+ +  L   S      +TH+   + R +  + I   L + +  E+    
Sbjct: 181 ISKVMELISKLKGK-PLDKNSLSYVRTLTHLNFMIERVKEDKTIKNELLDSIKEEMKS-- 237

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            +   +++  ++ K F +++   E GY+  +L
Sbjct: 238 EFSIAIKVAMLIEKLFEIKIPEDEIGYIALHL 269


>UniRef50_C6PDR4 PTS system transcriptional activator n=1 Tax=Thermoanaerobacterium
           thermosaccharolyticum DSM 571 RepID=C6PDR4_CLOTS
          Length = 899

 Score = 56.7 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 12/100 (12%), Positives = 37/100 (37%), Gaps = 1/100 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            ++ +DI     ++  ++       +     T    H+ + + R  + + I       + 
Sbjct: 435 HILGEDIINITDRIAELVSELLGKELSQNSYTALALHLNTLIERVNKNKPIVNPQLSKIK 494

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           +L     ++  V+  +++ K   + +   E G++   L  
Sbjct: 495 QLY-PREFEVAVEAKKIIEKYLNVSIPEDEAGFITIFLIS 533



 Score = 47.1 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE-IEPLDNELLAELA 74
           +++   +   +  L     +    +     + H A  + R ++GE+ IE +  E    + 
Sbjct: 796 EELYSDIQDTIMKLCDTLSVCFDDDMLLGIILHFAFMVSRIKKGEKSIEYIGKEEY--IK 853

Query: 75  QSSH-WQAVVQLHQVLLKEFALEVNPCEEGYL 105
            +   + AV +    L  ++++ +   E  Y+
Sbjct: 854 NNKSLYNAVKKALTHLNTKYSIIIPDDEICYI 885


>UniRef50_D1B6P9 Transcriptional antiterminator, BglG n=1 Tax=Thermanaerovibrio
           acidaminovorans DSM 6589 RepID=D1B6P9_THEAS
          Length = 285

 Score = 56.7 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 40/111 (36%), Gaps = 1/111 (0%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           + RL        ID      + Q + ++E    +P+          H+  A+ R R G  
Sbjct: 55  KERLRYAKVLAEIDGSFAALVAQGIAIMEDHLGVPLGERIHASLTDHLFFAVKRLREGIA 114

Query: 62  IEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +       +A +       A   + + L +E  L++   E  ++  +++  
Sbjct: 115 VRNPFAREVAAMY-PKEHAASQAMLRWLSEEVHLDMPDDEAAFVALHVHSA 164



 Score = 47.5 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 11/107 (10%)

Query: 20  KGMMQVVNVLETECHLPVR--SEQGTMAMTHMASALMRSR-------RGEEIEPLDNELL 70
           + + ++V + E      +   S      + H++ ++ R          G+ I  L+  + 
Sbjct: 178 RVISELVAITEESLGFRLDRLSPHYMRFIRHLSFSIDRVEGGIEGDLEGDPISTLEETMK 237

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            E      +   ++L   +       + P E  YL  +++ L+ +  
Sbjct: 238 RE--NPVPYGIALKLCLYMRNALDRPIPPAEVVYLTIHIHRLYNSKQ 282


>UniRef50_A6LWC3 Sigma-54 factor, interaction domain-containing protein n=4
           Tax=Clostridia RepID=A6LWC3_CLOB8
          Length = 995

 Score = 56.4 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 40/98 (40%), Gaps = 2/98 (2%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +ID+ I   + +V ++ +      ++         H+ S   R ++G  +   +++ + 
Sbjct: 514 NIIDEKILNVVEKVTDIAKQYIE-NIQENFYYCVAMHLNSTYERLKQGRIVRNPESDYIK 572

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +    + ++    L + +     +E+   E G++   L
Sbjct: 573 K-EYYNEYRIAKILTKEINNSLDIELPEDEIGFIAMYL 609


>UniRef50_UPI0001C4223B transcription antiterminator GlcT n=1 Tax=Bacillus pseudofirmus OF4
           RepID=UPI0001C4223B
          Length = 278

 Score = 56.4 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 1/103 (0%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +D+ +   + +++ +++ E   P+          H+  A+ R  +G EI         E+
Sbjct: 70  LDEALIVHINEIIRMIQRELPKPLYERIHLALTDHIQFAIRRLEQGIEISN-PFLTETEM 128

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
              + +    +    L     +E+   E G++  ++Y      
Sbjct: 129 MFPNEFHLARKAVDYLNAHLTVELPEAEIGFVALHIYSASSNQ 171


>UniRef50_B9Y2S2 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y2S2_9FIRM
          Length = 632

 Score = 56.4 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           ++ L +  +        +  V+       ++ + ++  +    H+  A+ R      I  
Sbjct: 173 IDFLPQETMYKSSQLSLIQHVIAESLMNANISITADSCSALSLHILIAINRVETNNLI-- 230

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
            + E+   + QS  ++  + +++ + + F + +   E  Y   ++ G  
Sbjct: 231 -NQEVSEAMRQSLEYKTAIDINRSIEEIFHVSLPEAELCYFAFHINGKK 278


>UniRef50_Q8XP92 Probable transcription antiterminator n=1 Tax=Clostridium
           perfringens RepID=Q8XP92_CLOPE
          Length = 194

 Score = 56.4 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D+       +++  +  +    +        + H++ A+ R ++GE    L N  L E+ 
Sbjct: 75  DEKFIAFCEELILEISRDFSDELNEIIHIGLIDHISFAIERMKKGEI---LRNPFLVEIE 131

Query: 75  --QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLL 106
                 ++A  ++ + L     + +   E G++ 
Sbjct: 132 TLYPKEFEAATKMVKKLEDFTGVSIVDDEIGFIA 165


>UniRef50_D0KIH3 Transcriptional antiterminator, BglG n=13 Tax=Bacteria
           RepID=D0KIH3_PECWW
          Length = 313

 Score = 56.0 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           + ++    + ++++    + H  +  +     + H++ A+ R R+G  I+   N LL E+
Sbjct: 101 VREEYVHIVNKIIDDANRQLHGRLSEQVFFTLIDHISFAIERYRKGISIQ---NRLLYEV 157

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            +     +    +    + ++  LE+   E G +  +L   
Sbjct: 158 KRFYPQEFAIASRALNDINQQMTLELPEEEAGNIAFHLVNA 198



 Score = 42.9 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL- 73
              K +  + N+++   H+ +  E    +  +THM   + R      I   D+ +  ++ 
Sbjct: 210 QSVKMLKDIFNIIQYNFHIVIDKESINYSRFLTHMQFFIQRLLENSLIHSNDDFIFDQVT 269

Query: 74  -AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
                 ++    +   +     ++++  E  YL+ ++ 
Sbjct: 270 KEYPDAYKCSRLIKDYIHNLLNIDISNDEMLYLIIHIV 307


>UniRef50_B2ISN0 PTS system, IIB component n=15 Tax=Streptococcus pneumoniae
           RepID=B2ISN0_STRPS
          Length = 659

 Score = 56.0 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 24  QVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVV 83
           ++V     E +L +        + H+A +++R + G EI+ +D ++  +  +        
Sbjct: 202 RIVLDECQEANLKLSDFVLQNLVVHIALSVIRLKSGFEIKNIDCQMTDDAIERK---VAQ 258

Query: 84  QLHQVLLKEFALEVNPCEEGYLLANLYG 111
           ++   + +    E    E  Y+  +L  
Sbjct: 259 RILSKVREVTNQEFPVQEIDYITLHLLA 286


>UniRef50_A1JND6 Beta-glucoside operon antiterminator n=3 Tax=Enterobacteriaceae
           RepID=A1JND6_YERE8
          Length = 277

 Score = 55.6 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/100 (11%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           + +++   ++ +V    T+    +        + H++ A+ R+++G  +  +   LL ++
Sbjct: 66  LPEELFDIVLDIVKQATTKLDRKIHKSVYASLLDHISFAIERAKQGVHVRNM---LLWDI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +   + +   +   + + ++  +++   E G++  +L  
Sbjct: 123 KRLYRNEFIIGISALENIKQKLNVDLAEDEAGFIALHLLN 162



 Score = 38.3 bits (88), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +++ K +  ++N+++   ++    E       +TH+     R      +   DN L   +
Sbjct: 173 ENVSKVIQDLLNIVKYHFNIEYEEESINFQRFVTHLKFFSHRLLSNTYVMTNDNSLHDVV 232

Query: 74  --AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
               S+ ++   ++++ +  ++  E+   E  +L  ++
Sbjct: 233 AEKYSTSYECTKKINKFIKHDYGRELTSDEMMFLAIHI 270


>UniRef50_C6PFM7 PTS system transcriptional activator n=1 Tax=Thermoanaerobacter
           italicus Ab9 RepID=C6PFM7_9THEO
          Length = 907

 Score = 55.6 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 45/101 (44%), Gaps = 5/101 (4%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++DK+I     +V +  E + ++ +          H+ + + R + G+ I  L    L E
Sbjct: 455 LVDKEIIDFSAEVKDFAERKLNIKLNDNFLYAFSFHLEALIKRIKNGQPITNL---RLNE 511

Query: 73  LAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           +     + ++   ++ +++  +F + V+  E G++   L  
Sbjct: 512 IRNKYINEFKISEEIVKMIRDKFKINVSTEESGFITLFLVS 552


>UniRef50_C6QUF4 PTS modulated transcriptional regulator, MtlR family n=1
           Tax=Geobacillus sp. Y4.1MC1 RepID=C6QUF4_9BACI
          Length = 685

 Score = 55.6 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 1/99 (1%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +  ++   ET   +   ++       +++  L R  RG+ I+ +D +    L  +  ++ 
Sbjct: 192 VKNIIRQSETFSAIRYTNDVIHTLTVYLSIFLKRWIRGKYIQ-MDEQEKEVLQSTREYKT 250

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
              +   +   F ++V   E  YL   L G  +  ++++
Sbjct: 251 AHHIITQIENVFQVDVPQDEICYLTTYLLGSRVTDDKQI 289



 Score = 38.3 bits (88), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 12/108 (11%)

Query: 13  VIDKD-ICKGMMQVVNVLETECH------LPVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
            ID++     + Q++  +  +           R E     + HM  A  R + G  ++  
Sbjct: 288 QIDQNNEIATLKQIIKNMVDDFQKYACVQFKHREELEKNLLIHMKPAYYRLKYGLHLQ-- 345

Query: 66  DNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            NEL   +       +    ++   +       V   E  Y+  +  G
Sbjct: 346 -NELTQSVKANYHDIFTLTKKVVHHVENVVGQSVGDDEIAYIAMHFGG 392


>UniRef50_C2Q5B4 Putative uncharacterized protein n=2 Tax=Bacillus cereus
           RepID=C2Q5B4_BACCE
          Length = 283

 Score = 55.2 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 5/109 (4%)

Query: 6   NLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPL 65
            LL     I  +  +   Q+V  ++ +    +          H+  A+ R ++G+ I   
Sbjct: 58  KLLQLINEIPTEHFELTTQIVEYIKKQISNSISDNIYLTLTDHINFAINRFQQGQIIR-- 115

Query: 66  DNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            N L  E+ +     +   +    ++ +    E+   E G +  ++   
Sbjct: 116 -NPLFWEIKKFYPEEYNVSLTALTIIKEHTGFELPEEEAGSIALHVINA 163



 Score = 41.3 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 6   NLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIE 63
           N++ E  ++   I  G++++VN       + +  +       +TH+     R  R E+I 
Sbjct: 167 NIVMEETIMVTKIVGGILKIVNY---HFGIKLDEKSLNYNRFVTHLRYFAYRLSRNEQIV 223

Query: 64  PLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             D+ L  ++ +     +    ++  +L   +  ++   E  Y + ++
Sbjct: 224 EEDSLLYQQVKESYPEAYGCAKKIMALLKSNYNQKLTKNEITYFVIHI 271


>UniRef50_Q5KYD3 Hypothetical conserved protein n=1 Tax=Geobacillus kaustophilus
           RepID=Q5KYD3_GEOKA
          Length = 684

 Score = 55.2 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +   +   E+   +    E       ++A    R  RG+ ++ +D +    L     +Q 
Sbjct: 191 IFDWICQFESTFSIRYTGEVIQTLPIYLALFQRRWARGKFVQ-MDEQEKEVLRSMREYQI 249

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
              L + +     + +   E  YL  +L    +A ++++
Sbjct: 250 ADHLVRRIENVSQISIPDDEVCYLTTHLLSFRVADDKQM 288



 Score = 44.0 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 17  DICKGMMQVVNVLETECH------LPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           D    + +++  +  +           R E     + HM  A  R + G  ++   N+L 
Sbjct: 292 DDITTLKRIIRHMVDDFQTYACVQFKRREELEKNLLVHMKPAYYRLKYGFHLQ---NDLT 348

Query: 71  AELAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
             +  +    +    ++   L       V+  E  Y+  +  G
Sbjct: 349 ESVKANYQDLFTLTKKVVHHLESVVGQPVSDDEIAYIAMHFGG 391


>UniRef50_P39805 Transcription antiterminator licT n=25 Tax=Firmicutes
           RepID=LICT_BACSU
          Length = 277

 Score = 55.2 bits (132), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 12/106 (11%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +  +   ++++  + +    +          H+  A+ R+++G +I+   N LL E 
Sbjct: 66  IPIECMEVSEEIISYAKLQLGKKLNDSIYVSLTDHINFAIQRNQKGLDIK---NALLWET 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            +     +    +   ++  +  + +   E G++  ++    +   
Sbjct: 123 KRLYKDEFAIGKEALVMVKNKTGVSLPEDEAGFIALHIVNAELNEE 168



 Score = 42.9 bits (100), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           +I K M +++++++    +    E       +TH+     R   G  +E  D+ LL  + 
Sbjct: 174 NITKVMQEILSIVKYHFKIEFNEESLHYYRFVTHLKFFAQRLFNGTHMESQDDFLLDTVK 233

Query: 75  Q--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +     ++   ++   + +E+  ++   E  YL  ++
Sbjct: 234 EKYHRAYECTKKIQTYIEREYEHKLTSDELLYLTIHI 270


>UniRef50_A4ED34 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens
           ATCC 25986 RepID=A4ED34_9ACTN
          Length = 302

 Score = 55.2 bits (132), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLDNELLAE 72
           +  DI     +V++++  E    + +        H++ A+ R+++G  I  PL  E+   
Sbjct: 85  LPSDIVMFAAKVMDIVANELPYDLSTNATLFMADHLSFAVARAQKGVRIAMPLAYEVRE- 143

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
                 ++A   +   L KE    +   E   +  NL    +    +
Sbjct: 144 -TYPKEYKAAQFIVMRLEKELGERLPKDEIASIAMNLVNARVVEAVK 189



 Score = 40.6 bits (94), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTM--AMTHMASALMRSRRGEEIEPLDNELLAE 72
            K     +  V+ +LE++  + V  +        TH+     R + GE +   + ++   
Sbjct: 195 TKQFDDMLEDVIEILESDFRIIVDRDSFDFTRFATHLRYLFKRIQAGESLNSANMQMYKN 254

Query: 73  LAQSSHWQAVVQLHQVLL----KEFALEVNPCEEGYLLANL 109
                 +  + +  + +     + +   ++  EE YL+ +L
Sbjct: 255 FR--EEFPQLAECVKHIGSYCRETWDATLSEEEELYLMIHL 293


>UniRef50_A6M2B9 Sigma-54 factor, interaction domain-containing protein n=5
           Tax=Clostridia RepID=A6M2B9_CLOB8
          Length = 895

 Score = 54.8 bits (131), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 40/98 (40%), Gaps = 1/98 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +ID+D  K +  +V+ +  +  +   S   T    H+ + + R    + I   +   + +
Sbjct: 431 IIDEDTLKCIDSIVSHITRKLPVIFDSNLYTAFALHINTLINRINSDKIIINTNLNRIKD 490

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           L   S +   +++ +++       +   E GYL   L 
Sbjct: 491 LY-PSEFAVALEIKEIIENTINKSIPIDEAGYLTLFLI 527



 Score = 44.8 bits (105), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS 76
           ++ K +   +N+L+ +  + +  E     + H++  + R R  +       +        
Sbjct: 792 ELYKDVTLFLNILQEKLLIKLSDENMVGVILHLSFVIGRLRNEDNPAVYPQKEKYLEENL 851

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           + +  + +    +  ++ +E++  E  YL  NL  
Sbjct: 852 NLYNIIKENLNFITSKYKVEISDDEICYL-MNLLS 885


>UniRef50_C9RTV4 PTS modulated transcriptional regulator, MtlR family n=2
           Tax=Geobacillus RepID=C9RTV4_GEOSY
          Length = 714

 Score = 54.8 bits (131), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
            + ++ V+N  E   ++    +              R  +G++I+  D      + Q+  
Sbjct: 202 LRNILDVLNECEKNLNIQFADDVLYHLALRFWLFGKRIVQGKKID-FDPVEKEVIQQTKE 260

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           ++A       L   F   +   E  YL  +L    +  +
Sbjct: 261 FEAAQTARSKLESIFQTSIPDDEVYYLATHLLSSKVQYS 299



 Score = 38.3 bits (88), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 15  DKDICKGMMQVVNVLETECH------LPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNE 68
             D  K +  +V  + TE         P R       + H+  A  R + G ++E    E
Sbjct: 305 SHDDYKNLQNIVQKMVTEFQAFTCITFPNRKAVEENLLLHLKPAYYRIKYGLQVENPMIE 364

Query: 69  LLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           L+        +    ++          +V+  E   +  +  G
Sbjct: 365 LIKT-KYKDLFLITKKVIHHFETAIGKKVSDEEAALIAIHFGG 406


>UniRef50_UPI0001694F32 transcriptional antiterminator, BglG family protein n=1
           Tax=Paenibacillus larvae subsp. larvae BRL-230010
           RepID=UPI0001694F32
          Length = 652

 Score = 54.8 bits (131), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
           +++ + +  ++ +LE + +L +  ++    +   + A+ R R  E I+ ++   +  + Q
Sbjct: 208 ENVFQAVHSLIKMLEEKLNLLLTDQEMIGLLFRFSIAIRRIRDNERIQ-IEAISVKAIKQ 266

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           S+ ++ V++    L  +  ++    E  Y+   L 
Sbjct: 267 SASYKIVLEGLTDLGLQMGIKFPEEEAVYVSMQLI 301


>UniRef50_B9Y9G6 Putative uncharacterized protein (Fragment) n=1 Tax=Holdemania
           filiformis DSM 12042 RepID=B9Y9G6_9FIRM
          Length = 300

 Score = 54.8 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP--LD 66
            E    + DI     +++  +       +        + H+  AL R      IEP  + 
Sbjct: 176 QEINFFNNDIISSTSEIIMDVLAHNDYEISDLILQNLVVHVLIALNRMYANHYIEPEGIQ 235

Query: 67  NELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           +    +   +        +++ L +++ +++N  E  +L  NL G     +  V
Sbjct: 236 DVFQNKNLFAHEILIAESIYRKLCRKYNIQINENEIYFLAINLKGKKNYHSANV 289


>UniRef50_Q03XR5 Beta-glucoside operon antiterminator n=2 Tax=Leuconostoc
           RepID=Q03XR5_LEUMM
          Length = 286

 Score = 54.8 bits (131), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 5/99 (5%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A  I  D  +    +++  E    L            H+  A+ R ++   I+   NELL
Sbjct: 62  ADTISSDYVEIASHIISTAEKSLGLSFDGYLLIGLADHIQFAVERLQKNLPIK---NELL 118

Query: 71  AELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
            E        ++        + ++  +++   E G++  
Sbjct: 119 WETKHFYPDEYRIGALAVAFINEQMGVQLPEDEVGFIAL 157


>UniRef50_UPI000196B732 hypothetical protein CATMIT_00744 n=1 Tax=Catenibacterium mitsuokai
           DSM 15897 RepID=UPI000196B732
          Length = 280

 Score = 54.8 bits (131), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE-PLDNELLAE 72
           +D    +   +++   E E    + ++       H+A ++ R +    I  PL +++   
Sbjct: 73  VDPIFLEIANEIIRYAEKEFG-DIDTKILLPLADHIAFSIDRIKNDMVISNPLTSDI--R 129

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
           L  +  ++   +  +++ +    E+   E GY+  +++    + 
Sbjct: 130 LLFADEYEVATKARKIIKRRLGYEITDDEIGYISLHIHAALSSQ 173



 Score = 48.7 bits (115), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
              +   + Q V  +E   ++ +  +       + H+   ++R  R E+++    +   E
Sbjct: 178 SLQVASIIHQTVTYVEETFNIVIDEDSIAYIRLVNHIKFLMVRIDRKEDVQVSMTDYTKE 237

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                 +    ++   + K    +++  E GYL  ++
Sbjct: 238 -KFPESYAVACRVADYIEKLILEKISDEEIGYLAIHI 273


>UniRef50_B0NY82 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
           RepID=B0NY82_9CLOT
          Length = 280

 Score = 54.4 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 12/101 (11%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I     +    ++   +      +          H+  A+ R   G ++    N LL ++
Sbjct: 66  IPSKYLEVSNCIIERAKKYLDAEIDDNIYISLTDHIHMAVKRYLDGMQV---PNPLLLDI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            +  +  ++   Q  +++  +  +E+   E G++  +    
Sbjct: 123 KRFYNKEYEIGCQALEIIKDQLKVELPEDEAGFIAFHFVNA 163


>UniRef50_B9Y3A0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y3A0_9FIRM
          Length = 654

 Score = 54.4 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 2/102 (1%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
            + +   +  +E E +     E     + + A A+ R      +  L       + + + 
Sbjct: 197 LELLKSCIADIEKEWNFTFAEESYKSILLYAALAITR--SDFSVLHLSESEEEIVVKYNE 254

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           +     + +++ K+F + +   E  Y    L    M   +E+
Sbjct: 255 YNLAQSIFRIINKKFYVNIPESEVKYFAIQLLCSKMIHTQEI 296


>UniRef50_C6Q8D8 PTS system transcriptional activator n=1 Tax=Thermoanaerobacter
           mathranii subsp. mathranii str. A3 RepID=C6Q8D8_9THEO
          Length = 897

 Score = 54.4 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            V+  +I + + +++   E   +  +  E       H+ +A+ R +R  +I    N  L 
Sbjct: 434 NVVGAEIVRAVEEIIKFSEKRLNKVLSKEMYYAMAVHIYTAIERIKRNRKIV---NPQLN 490

Query: 72  ELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
           ++    S  +   +   +++ +   + +   E G+L  
Sbjct: 491 KIRTEYSEEFNIALDCLKIIERVLDVSMPIDEAGFLAM 528



 Score = 45.2 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 40/94 (42%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
            +  K + + +   +N +E E ++ V +        H+A  + R + G  ++   N+   
Sbjct: 793 NINSKYVLQDIKMFINAIENELNIKVNTNALIGIALHVACMIDRLKGGGSVDEFMNKESY 852

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYL 105
                  +  V +  ++L K++ + ++  E  Y+
Sbjct: 853 ISENYELYNIVKKACEILNKKYDINISDDEICYI 886


>UniRef50_B9Y4W4 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9Y4W4_9FIRM
          Length = 506

 Score = 54.4 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP---LDNELLAEL 73
              + + Q V  +E    + +        +TH+  A+ R R    I P   +D +L+   
Sbjct: 201 QSLRQVEQCVGEIEEAIGVVLGDIYYINIVTHILIAMERMRSRRYINPGGVMDPKLI--- 257

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                ++ +    Q   +   +   P E  Y+  +  G
Sbjct: 258 -NPLIYKKIAACVQTFSQAVQITFPPNELLYIYTHFMG 294


>UniRef50_B9EBW1 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus
           JCSC5402 RepID=B9EBW1_MACCJ
          Length = 283

 Score = 54.0 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           + + ++ + +++V+  ++ + +  +          H+  AL R + G  +    N  L E
Sbjct: 69  LTNDEVIQTVIEVIEFIDHKTNGEMNDNILLSLTDHIIFALKRYQEGIIVA---NPFLKE 125

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
                   +    Q+  +L     ++    E G++  +++      +
Sbjct: 126 TESLYRQEFLIAEQVVAMLNDRLQVQFPKTEVGFIALHIHSSVNNHS 172


>UniRef50_C2HQQ4 Beta-glucoside transcriptional antiterminator n=3 Tax=Lactobacillus
           RepID=C2HQQ4_LACAC
          Length = 291

 Score = 54.0 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 36/101 (35%), Gaps = 3/101 (2%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            ID    +   ++++   T     +  +       H+  A+ R + G  I+  +   +  
Sbjct: 73  QIDPKYIELSDRIISEAITSSGKKLSDDIYVSLPDHLQFAVERVKNGILIQ--NKLTVET 130

Query: 73  LA-QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +      +Q   ++ + L ++  L+    E   +  +L   
Sbjct: 131 MQTYPDEFQLGKRVLKYLSEKTGLDFPDDEATNIAMHLITA 171



 Score = 43.3 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--- 73
           ++    +++++ +  + ++   S      +TH+   + R ++ +  +   ++ L ++   
Sbjct: 185 ELINRFLKIISEMLGK-NINSNSVSYYRLITHLKFFIQRIKKQQSQKFKADKDLYDMVIH 243

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
           +    +    ++  ++L +F  EV+  E  +L  +++ + ++
Sbjct: 244 SYHKEYIIAQRIAGIVLHDFNYEVSEDEVMFLTIHIHRINVS 285


>UniRef50_B0N6K6 Putative uncharacterized protein n=3 Tax=Bacteria
           RepID=B0N6K6_9FIRM
          Length = 644

 Score = 54.0 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
               + Q+++      H+          + H A  + R +    I          +    
Sbjct: 194 DLDLLKQIISNKLKNAHIKTNDFNFKNLIIHFALMISRIQFDCYIN-----TNNTIKIDD 248

Query: 78  HW-QAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           ++   +  +   +   F + ++  E+ Y+ ++L  
Sbjct: 249 NYTDFIDDIANEIEYTFNITISEGEKKYIYSHLVA 283


>UniRef50_A6M218 Sigma-54 factor, interaction domain-containing protein n=19
           Tax=Firmicutes RepID=A6M218_CLOB8
          Length = 916

 Score = 54.0 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A +++  +     +++++   + +     +       H+  ++ R   G++I      ++
Sbjct: 455 AKIVNIKVATVAEKMLSIASEKLNRDFDQKVYFGLALHLQGSIERINSGKKIYHPKLNII 514

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
             +     +   + + ++  KEF +++   E GY+   L       +E++
Sbjct: 515 R-VENREEFAVAMDIIKIAEKEFHIDIPLDEIGYITMFLAACNDENSEQL 563



 Score = 44.8 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/90 (12%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRG-EEIEPLDNELLAELAQS 76
           +   +  V+  +E    + ++ +     + H+   + + + G +E++  D E    +  S
Sbjct: 818 VFSDIRDVIRKIEENLKVRIQHDAQIGILIHITFLIDKLKHGGQELKFKDLENYRHMYNS 877

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLL 106
             +  + ++ + L + + + +   E  Y++
Sbjct: 878 -EFSLIKKILKDLERVYNINIGDNEIAYIV 906


>UniRef50_C5EIH6 Transcription antiterminator n=1 Tax=Clostridiales bacterium
           1_7_47FAA RepID=C5EIH6_9FIRM
          Length = 276

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 9   CEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNE 68
                I ++  + + + V+   +    P+ S+     + H+  A+ R ++G     L N 
Sbjct: 61  RMIEEIPQETLEAVQEAVDAAGSSLSCPLDSQAFFTLLDHLIYAMERCQKG---IVLQNR 117

Query: 69  LLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           LL E+ +     ++A       L +   L++   E G +  +L   
Sbjct: 118 LLWEVKKFYPREYRAGKDAVDYLNQRLGLKLPEEEAGNIAFHLVNA 163



 Score = 44.8 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL--A 74
            K +  ++ V++      + +E    +  +TH+   + R   G  +E  D+ L  ++   
Sbjct: 177 VKMVKDILTVVQFHMKKELDTESLYFSRFVTHLQFFVQRLLEGRMLEETDSFLYEQISRQ 236

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             +  +A +++   + K     +   E  YL  ++
Sbjct: 237 YPNELEAAMKISGYVEKSTKTLITREEILYLTIHI 271


>UniRef50_D1AMM5 Transcriptional antiterminator, BglG n=1 Tax=Sebaldella termitidis
           ATCC 33386 RepID=D1AMM5_SEBTE
          Length = 655

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           G   ++  + + +++   E + +  +        +TH+   + R R G  +   +N++  
Sbjct: 199 GQFGREEVEAVAKILKDTEQKLNYTMGEIYYINMITHILILIKRLRNGNIL--YENKMRR 256

Query: 72  ELAQSSH--WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
           ++ ++    +    ++   + + F +EV   E  ++   L    M  
Sbjct: 257 DIRKTDKRIYTISQEMSGKITETFKIEVPEEETYFIYQYLISSGMEI 303


>UniRef50_C5EMV1 Transcriptional antiterminator n=1 Tax=Clostridiales bacterium
           1_7_47FAA RepID=C5EMV1_9FIRM
          Length = 272

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 4   RLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIE 63
           + + L +   I+    +   +++   E    + +  +       H+A A+ R+R G    
Sbjct: 56  KTSALQQVNSIEPVYIEAAGRIIEEAEGTMGV-LSHDILIPMADHIALAVSRAREG---R 111

Query: 64  PLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            L N    ++    SS +Q+ ++   ++ +   + ++  E GY+  +++      N
Sbjct: 112 ELPNPFRHDIKALFSSEYQSAMKGVAIIRELTGVTISEDEVGYITLHIHAGLSEEN 167



 Score = 48.3 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D+ + +   ++ +E+     + S+        +H+   + R+R+GE    LD +  A  +
Sbjct: 173 DMARLVQDSMHQIESRMGFNLASDSLGYNRLASHVRYMIARARKGER-AGLDMQDYARTS 231

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
               ++   ++ + + K   L V P E G+L  ++
Sbjct: 232 FPKPYEVAEKVCRDMEKRLGLPVAPEETGFLAIHI 266


>UniRef50_C8WQV6 Transcriptional antiterminator, BglG n=2 Tax=Alicyclobacillus
           acidocaldarius RepID=C8WQV6_ALIAD
          Length = 674

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
                 + V  +E    LP  S+    +    H+A AL R R G  I    N LL  +  
Sbjct: 314 ALDLAHRFVRAVEDITRLPFASDHLLVSGLAQHLAPALDRVRAGLPIR---NPLLETVKA 370

Query: 76  --SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                + A     + +     L +   E G+L  +L
Sbjct: 371 RYPELFAAAESASREVFAPHGLRLPDEEIGFLAMHL 406


>UniRef50_Q184L9 Transcription antiterminator n=3 Tax=Clostridium difficile
           RepID=Q184L9_CLOD6
          Length = 278

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ- 75
           +  K   +++       +  V         +H+  A+ R ++G     L N +L E  Q 
Sbjct: 68  EYFKISEEIIEKANEVLNTQVNDSIILALTSHIEFAVQREKQG---IKLPNLILNETKQL 124

Query: 76  -SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY-GLWMAANEE 119
               ++  +     + K   +++   E GY+  ++  GL  +  +E
Sbjct: 125 YREEFEFGLWAIDEIEKRIGIKLPEDEAGYIAIHIINGLENSQKDE 170


>UniRef50_B9DU03 Transcriptional regulator (Antiterminator) n=2 Tax=Streptococcus
           RepID=B9DU03_STRU0
          Length = 655

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 16  KDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ 75
               + +  +V        L +        + H+A A+ R   G +I  L    + E   
Sbjct: 190 PISFEELTIIVLDECRSQSLKLSDFVIQNLIVHIALAISRVNDGFKISQLS---IDEKKF 246

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +       + + +      +    E  Y+  +L  
Sbjct: 247 KTEILVATNILRRVEYVTGTDFPTEEINYIALHLIS 282


>UniRef50_C3RIA8 Transcription antiterminator n=1 Tax=Mollicutes bacterium D7
           RepID=C3RIA8_9MOLU
          Length = 275

 Score = 53.7 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           +     L     I  D+     ++++         +          H+  A+ R  +G  
Sbjct: 54  KQNNRFLELIKDIPVDVLNVTDEIIDFARNGLDKELNDGIYITLTDHINYAIERYLQGIN 113

Query: 62  IEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           ++   N LL E+ Q     ++   +  +++ ++  + ++  E G++  +     + +  E
Sbjct: 114 VQ---NPLLWEIRQFYQEEYKIAAEALKIINQKLMVNLSEDEVGFIALHFVNAELNSEME 170



 Score = 38.6 bits (89), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 41/101 (40%), Gaps = 4/101 (3%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL- 73
            I K + +++N++     +    +       +TH+     R   GE+    D+ L   + 
Sbjct: 174 QITKIIQEILNIVRYHLKISFDEDSLDYHRFVTHLKFFAKRLMFGEKEAKRDDILFDIVI 233

Query: 74  -AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                 ++ V  + + + K +  +++  E+ YL  ++  L 
Sbjct: 234 ERYPEAFECVKNIEKHVQKIYKKDLSQAEKLYLTLHIARLK 274


>UniRef50_D1PSC1 Transcription antiterminator LicT n=1 Tax=Subdoligranulum variabile
           DSM 15176 RepID=D1PSC1_9FIRM
          Length = 288

 Score = 53.3 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 5/114 (4%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRG-E 60
           + RL  L E   I  +       ++  ++   H P+          H++ A+ R  +G E
Sbjct: 56  QRRLRELVE--QIPIEHLDLTEAMIAEIKAAIHQPLNESLLITLADHISFAIQRKAQGIE 113

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
              PL   +L      + +Q   +   ++ + F +E++P E  ++  ++    +
Sbjct: 114 FKNPLAGSIL--CYYPTEYQLGQRCLAMVKERFGVELSPDEAAFIALHIVNAEL 165


>UniRef50_D1ANJ9 Transcriptional antiterminator, BglG n=1 Tax=Sebaldella termitidis
           ATCC 33386 RepID=D1ANJ9_SEBTE
          Length = 281

 Score = 53.3 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D +I   +   + +++ E    +        ++H++ A+ RS+ G  I    N  L EL 
Sbjct: 70  DSEILDIVEDALKIIDKELKEKLSIYFHLTMLSHLSFAIERSKYGTIIR---NPFLEELR 126

Query: 75  --QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                 ++   +    + K    ++   E G++  +++   
Sbjct: 127 VLYPQEYRIAEKFIAEVNKHLEYKLEIDEVGFITMHIHAAL 167



 Score = 43.3 bits (101), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTM--AMTHMASALMRSRRGEEIEPLDNELLAELA 74
           +      ++V V+E E    +  E       +TH+  A+ R +   +IE +    + +  
Sbjct: 177 EQLTLTYELVKVIENELGHKIDRESYDFIRLLTHLKFAVNRVKNNIKIENILLPEIKKKL 236

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           +  + +   ++ +   K + +  N  E GY+  +L  + 
Sbjct: 237 KLYY-KISQKVAKFAEKNYNILFNEDEVGYITIHLAKIK 274


>UniRef50_D0R5U6 Transcription antiterminator n=1 Tax=Lactobacillus johnsonii FI9785
           RepID=D0R5U6_LACJF
          Length = 295

 Score = 53.3 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I+        +V+ ++E   ++     Q      H+  AL R     +I   +  +  E+
Sbjct: 63  INASTIDLTNKVIQMVEPLLNVKFNDFQHLALADHIDFALSRIEDNIDISAAN--IRWEV 120

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
                  ++   ++  ++ KE  + +   E  ++  +    
Sbjct: 121 KNLFPKEYKISEKVIALINKEMKVNLPASESTFMTYHFVNA 161


>UniRef50_A8FJ69 BglG family transcriptional antiterminator n=6 Tax=Bacilli
           RepID=A8FJ69_BACP2
          Length = 282

 Score = 53.3 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/116 (11%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
              L     + ++      ++V   E   +  + S      M H+  A+ R ++   I  
Sbjct: 58  KEFLQLLDSMPQEFIDLTQRIVQYAEKRLNSSLNSGVYFTLMDHLNFAVERHKKNINIT- 116

Query: 65  LDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
             N +  E+    +  ++      +++    ++++   E   +  +L       ++
Sbjct: 117 --NRVYWEIKNYYTEEFEVGKYALELVNDTLSIQLPKEEAANIAFHLINALGEESD 170



 Score = 42.5 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 4/102 (3%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ-- 75
           K +  +VN++    ++ +  E    +  +TH+   + R    + +   +NEL  ++A   
Sbjct: 179 KMIGSIVNLVRYTLNMKMDQENIHYSRFITHVKFFVERFYANKLLSDQENELFEQIAHLY 238

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
                   ++   + +  ++ +   E  YL  +++ L     
Sbjct: 239 PQAMDVAFKIKDYIKQVHSIVIPNDELTYLAVHIHRLMSYQQ 280


>UniRef50_B0N368 Putative uncharacterized protein n=1 Tax=Clostridium ramosum DSM
           1402 RepID=B0N368_9FIRM
          Length = 619

 Score = 53.3 bits (127), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D +    + +V+        + +        + H+   L R +R   I   DNE+  ++ 
Sbjct: 183 DHEFIDELRKVIFN----DGITMPQRVFQNFIIHIQVQLNRIQRKCYISFHDNEI-EKMK 237

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
               +     + +V+ K F +E++  E+ YL  ++ G    +   +
Sbjct: 238 MEYEFLVAKDVSKVINKYFHIELSVEEQCYLAIHILGKKSNSTSAI 283


>UniRef50_C2GFH3 Transcriptional antiterminator n=2 Tax=Corynebacterium
           glucuronolyticum RepID=C2GFH3_9CORY
          Length = 333

 Score = 52.9 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 7/114 (6%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            R   L     +D  + + +   V++        +      +   H++ A+ R+  GE+I
Sbjct: 108 ERAQFLKGVLSLDPAVMETISAAVDLAVDLLG-ELHPSVYVVLAEHISFAVQRAGSGEQI 166

Query: 63  EPLDNELLAELAQ--SSHWQAVVQLHQVLLKEF-ALEVNPCEEGYLLANLYGLW 113
               N L+ E+       +QA   +   +        +   E  ++  +L    
Sbjct: 167 R---NSLVDEIRAAFPLEFQAAQLMVSYINSHTANATLPVDEAAFIALHLNAAR 217


>UniRef50_C9XQT4 Transcription antiterminator n=12 Tax=Firmicutes RepID=C9XQT4_CLODC
          Length = 287

 Score = 52.9 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  +L  L     I  +  K   +++   + + +  +          H  SA+ R + G 
Sbjct: 62  ISNKLQELLNN--IPIEHMKLSSEIIEYAQIKLNKKLNESIYISLSDHTYSAIQRMKEGI 119

Query: 61  EIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
            ++   N +L E+ +     ++  ++   ++  +  +++   E G++  ++    ++ 
Sbjct: 120 NVK---NAILWEIKRFYKEEFEIGMKALDIIENKTGIKLPEDEAGFIAFHIVNAQLSE 174


>UniRef50_A6LXA2 Transcriptional antiterminator, BglG n=15 Tax=Firmicutes
           RepID=A6LXA2_CLOB8
          Length = 279

 Score = 52.9 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/106 (12%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  ++ +   ++V+         +      +   H++ A+ R  +G       N LL E+
Sbjct: 66  IPLEVIQTTNEIVSYARYSLGKKLNDNIYILLTDHISFAMERVNKG---LQFKNALLWEI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            +  +  +    +  Q++ K   +++   E   +  ++    + ++
Sbjct: 123 KRFYNHEFLIGKEALQIIEKRLHVDLPEDEAANIALHIVNAQLNSS 168



 Score = 46.3 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS- 76
             +  ++N+++    L +          +TH+     R  RG EIE  D  L   + +  
Sbjct: 178 NMIQNILNIVKFHYKLELDEYSLHYERFITHLKFFSQRIFRGNEIEDEDTSLSKIMREKY 237

Query: 77  -SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              ++   ++ + +  EF  E+   E  YL  ++
Sbjct: 238 KEAYKCAEKIKKYVKSEFNSELTDEEMMYLAVHI 271


>UniRef50_D2C0F0 Transcriptional antiterminator, BglG n=2 Tax=Enterobacteriaceae
           RepID=D2C0F0_DICD5
          Length = 279

 Score = 52.9 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 5/100 (5%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  ++ +    +++    +    VR +       H+  A+ RSR+G  I+   N LL E+
Sbjct: 66  IPDEVIEMAAMIISRANLQLSSKVREQIFFTLADHLTFAIERSRKGIVIQ---NRLLPEV 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +     ++   +   ++ +++ +E+   E G +  +L  
Sbjct: 123 RRFYPQQFRVASEAVAIIRQQYGIELPEEESGNIAFHLVN 162



 Score = 39.0 bits (90), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL- 73
              K +  + N+++      + +E    +  MTHM   L R + GE     D+ LLA++ 
Sbjct: 175 QSVKMLKDIFNLVQYHFKKEIDTESINYSRFMTHMQFFLQRLQEGEISTARDSFLLAQVI 234

Query: 74  -AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
                 ++  + +   +     + +   E  +L  +L 
Sbjct: 235 KEYPDAYRGALLIRDYVKVRLDITLGGNELLWLTVHLV 272


>UniRef50_A8F9J6 Bifunctional PTS family fructose/mannitol (Fru) porter component
           IIA/transcriptional antiterminator n=2 Tax=Bacillus
           pumilus RepID=A8F9J6_BACP2
          Length = 639

 Score = 52.9 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/93 (12%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
            + +  +V     +  L ++       + H+A A+ ++R+ + I                
Sbjct: 194 LETIRSIVLTNLHQESLLIKDIALKNLVIHLAIAIQQTRKNQRIPASTTRTQ---RSPVL 250

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +   ++   +   F + ++  E  YL+ +L  
Sbjct: 251 VRIAQKIIHQVSDTFHVTLSEDETDYLVMHLLA 283


>UniRef50_C4V3X4 Possible N(Pi)-phosphohistidine--sugar phosphotransferase n=2
           Tax=Selenomonas RepID=C4V3X4_9FIRM
          Length = 644

 Score = 52.9 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQG--TMAMTHMASALMRSRRGEEIEPLDNE 68
           +GV D+ + + + +V+  ++ +  L   +++        H+  A+ R         + NE
Sbjct: 293 SGVNDEHVKELVEKVLVDVDKKFGLDFTADEYLKDGLALHLRIAIARV---NFHVNIRNE 349

Query: 69  LLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
           LL+ + Q     +Q  V   +++     +E N  E GY+  +        +
Sbjct: 350 LLSSVKQDYPLAFQIAVYAAKLVRDIDHIEFNENEIGYIALHFCAAMSRNS 400



 Score = 49.8 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 1/94 (1%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           + ++     M ++++       L +            A ++ RS  G  IE   + +  +
Sbjct: 187 LFERITYDQMEEILSQAGNVRRLQLTDSARHDLAVQTALSIQRSLTGHGIEC-SSSMAQK 245

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLL 106
           L  +  + A  ++   +L    +++   E  YL 
Sbjct: 246 LEDTFEYSAAKEILNKILNSIGVDIPYSEVFYLT 279


>UniRef50_C9B3C8 Transcriptional antiterminator bglG/CAT RNA-binding protein n=38
           Tax=Enterococcus RepID=C9B3C8_ENTFC
          Length = 283

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +  + + QVV   E +  +            H+  A+ R++  E I+  +  L    
Sbjct: 66  IPAEEIEWVKQVVEQAEDKLKVEFSPNIYLTLTDHLHYAITRAK--ENIQLPNPLLFETK 123

Query: 74  A-QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                 +QA  +    + ++  +E++  E G++  +   
Sbjct: 124 KFYPKEYQAAKEALLFVKQKTGVELSEDEAGFIAFHFVN 162



 Score = 38.6 bits (89), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 21  GMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ--S 76
            +  +++++     +    E       +TH+     R  +GE  +  D  L A + +   
Sbjct: 179 MVRDILSIISKFFGIVFDEESLNYQRIITHLQFFAQRYLKGEGSDEQDEFLYALVQEKYP 238

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             +  V ++++ L +    E+   E+ YL  ++
Sbjct: 239 KAFHCVERINEYLRQTQKQEMGIAEQIYLTIHI 271


>UniRef50_P24401 Transcription antiterminator lacT n=14 Tax=Lactobacillus
           RepID=LACT_LACCA
          Length = 292

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  D+     ++++V + +  L V          H+  A  R + G   E +  +    +
Sbjct: 67  IPIDVVTTTYEIIDVAQKQYRLKVLDYIYITLSDHIYEAYKRYQAGTYQETMVPDF--HI 124

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
              + +    Q  Q++     ++    E   L  +    
Sbjct: 125 QYPAEYAVAKQALQIIATNLGVQFPQSEIKNLALHFINA 163



 Score = 39.0 bits (90), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 24  QVVNVLETECHLPVRSEQ---GTMAMTHMASALMRSRR-GEEIEPLDNELLAELAQ--SS 77
           Q+V  +    H+             M H+   + R +R       +  E+  EL Q    
Sbjct: 183 QLVQEVLKRHHITRSHSNGNYYDRFMIHLQYLIDRLQRVDTYAVTIVPEVATELKQNYPQ 242

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            ++   ++   +  +    ++  E  Y + ++
Sbjct: 243 SYKIASEIFDEIKDQLYRSMSEDERLYFIIHI 274


>UniRef50_B1YFN4 Transcriptional antiterminator, BglG n=1 Tax=Exiguobacterium
           sibiricum 255-15 RepID=B1YFN4_EXIS2
          Length = 259

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 35  LPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA--QSSHWQAVVQLHQVLLKE 92
           +   S       THM   L R  +G+ +  +DN +L+ +    +  ++    +   L +E
Sbjct: 170 IETTSMTYYRFFTHMKLVLARIEQGQTLHDMDNVILSAVKTRYTDAFRCAENMAAWLEQE 229

Query: 93  FALEVNPCEEGYLLANL 109
               V   E GY+  ++
Sbjct: 230 LQTTVPQSEVGYMALHV 246



 Score = 50.6 bits (120), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA-- 74
           DI     Q+++  E E   P           H+A A+ R  R + +  + N L  E+   
Sbjct: 44  DIIDLSEQIISYAEGELKTPFHDYIHVSLTDHLAHAV-RLAREQLV--VHNRLAEEIRLL 100

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
            ++ +Q        + ++ A+ +   E   +  +LY      
Sbjct: 101 YTAEYQIGEWAVAHIEQKLAVSLPKEEAANIALHLYNARQRH 142


>UniRef50_A0AGN0 Complete genome n=21 Tax=Firmicutes RepID=A0AGN0_LISW6
          Length = 938

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  R N+L    +++++I      +   +E +    +          H+ S + R    +
Sbjct: 462 IHNRENILK---IVNEEILNFAEGIEQRIEHQLGKKLNERFLLAFSLHLTSFIKRIESNK 518

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            ++  + E +    Q   ++   ++   +   F + V   E  YL   L    +   E 
Sbjct: 519 PLKYTNIENVVN-DQPEAYELSREIKDDIEATFHIRVPNMEVMYLTL-LISSLLKEQEN 575


>UniRef50_C9AZS3 Beta-glucoside operon antiterminator n=2 Tax=Enterococcus
           casseliflavus RepID=C9AZS3_ENTCA
          Length = 279

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I+    +    ++ + E                 H+  AL R+R G +I+      L ++
Sbjct: 69  IEYRDLQLASDILKLFEEAFQCESNPALLVALADHIGFALTRAREGMKIQTPLEWELKQV 128

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                ++  +Q  +++ K   L +   E  ++  +   
Sbjct: 129 Y-PKEYEIGLQAVELMQKRTHLNIPKDEAAFITLHFVN 165



 Score = 41.3 bits (96), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLA--EL 73
           I K M  ++ ++        R +    +  +TH+   + R    E      + LL   +L
Sbjct: 179 ISKVMKDILTIINYHYGKEFRQDSIYFSRFITHIRYFVKRQMSNELPAQPASSLLDVIQL 238

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
                ++  +++ Q L   +  E+   E  YL  +L
Sbjct: 239 KYPLDYECAMKIKQFLENRYQWEITEDEVLYLTLHL 274


>UniRef50_C9A391 Transcriptional antiterminator n=1 Tax=Enterococcus gallinarum EG2
           RepID=C9A391_ENTGA
          Length = 642

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 10/90 (11%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 18  ICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSS 77
               + +++  L ++          T  + H+A A+ R + G    P            +
Sbjct: 177 DLDYIKEIIAELFSDYDFFTNDYALTNIVIHLAIAVDRMK-GNFQSPEAEAQAPHSIHPT 235

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
             +   ++ + + + + +     E   L  
Sbjct: 236 VLKISEKIAEKVAERYGIRFPKEEIRDLAI 265



 Score = 46.7 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRS-EQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
           V DK+    + +++  ++    +     E       H+ + L R   G        E L 
Sbjct: 287 VTDKNCLDLVRKILAKVDELYFIDGNEPEFFIRFALHIKNLLYRINNGYSCRNPMTETLK 346

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
           +      +   VQ+  V+ KE    ++  E  Y+  +L
Sbjct: 347 K-ECPLIYDCAVQVSHVIQKEIGYTISEDEIAYIAFHL 383


>UniRef50_C8P2Y2 Transcription antiterminator LicT n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P2Y2_ERYRH
          Length = 282

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             I  D  +    +V    +     +          H+  A++RS+   E+  L  E + 
Sbjct: 62  NKIPVDYFEATRAIVEYAHSVLDTSLSDTINVALTDHIYYAVLRSKDDVELPGLFTEEIK 121

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            +     ++        + K F + +   E GYL+ ++   
Sbjct: 122 -MYYPDEFKVGAWALNYINKRFEVTLPQDEIGYLVIHIVNA 161


>UniRef50_A6M341 Sigma-54 factor, interaction domain-containing protein n=2
           Tax=Clostridium beijerinckii NCIMB 8052
           RepID=A6M341_CLOB8
          Length = 932

 Score = 52.5 bits (125), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           ++DKDI     ++  + E      +          H ++   R ++   +    N  L  
Sbjct: 471 IVDKDIVDFAEEIKMLAENRLSRKLSDRFIYAISLHFSALFNRIKKN-TVSFSTNIELTL 529

Query: 73  LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            + S  +    ++H+++   + L +   E  YL   L  +   +++E
Sbjct: 530 SSNSKEYGVAKEIHKLIEDRYNLIIPEVEIEYLALLLSSIQELSHQE 576


>UniRef50_B0MFG1 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MFG1_9FIRM
          Length = 286

 Score = 52.1 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 7/118 (5%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            RL+ L +   I  D      Q+    E +    +          HM  A+ R ++G   
Sbjct: 62  NRLSELLK--QIPIDYFYLADQIKQHAEQKLSKELNQNIYVTLCDHMYYAVERFKQG--- 116

Query: 63  EPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
               N+L+ E+ +     +Q  ++  +++     +++   E  ++  ++    +  +E
Sbjct: 117 LLFQNQLMWEIKRFYPKEYQIALEAIKLMNSTLNVKLPEDEASFVALHIINAELNGHE 174


>UniRef50_Q9L8G7 ScrT n=3 Tax=Clostridium RepID=Q9L8G7_CLOAB
          Length = 282

 Score = 52.1 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 48/122 (39%), Gaps = 8/122 (6%)

Query: 1   METRLNLLCEAGVIDK---DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSR 57
           +E +   L    +I +   +  K    +++  + +  +            H++ A  R  
Sbjct: 51  IENQNENLKFQSLISEIPIEHIKVSENIISYAKRKLDVKFDEHIYISLTDHLSFAFRRYS 110

Query: 58  RGEEIEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
           +G +I+   N +L ++ +     +   +   + +  E  ++++  E G++  ++    + 
Sbjct: 111 KGIKIK---NNMLWDIKRIYKKEYNIGMWAVEYIKGELGIKMDEDEAGFIALHIIDASLN 167

Query: 116 AN 117
            +
Sbjct: 168 ES 169


>UniRef50_C5WHP5 Putative uncharacterized protein n=3 Tax=Streptococcus
           RepID=C5WHP5_STRDG
          Length = 288

 Score = 52.1 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 5/103 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +  +     + +++  E    L            H+   ++R R+G  I    N L  
Sbjct: 68  EQLPDEELNLFISLIDQAEQSLGLTFDENLHLSLTDHLHFMVVRVRQGVSIS---NPLAW 124

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           E+ +  +  +Q   ++   L K+ AL++   E   +  +L   
Sbjct: 125 EVRKFYAQEYQVAKEMLVHLRKKLALDIPDDEAASIALHLINA 167



 Score = 39.4 bits (91), Expect = 0.034,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            +   + ++ ++ ++       V  +       +TH+     R   G      D  L  +
Sbjct: 177 SQRTTRLVIDILEIVRLHFGKLVSEDSISYNRFVTHLQYFSQRVVNGVVQGSNDAFLYDQ 236

Query: 73  LAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMA 115
           + Q   + +    ++   + + +  +++  E+ YL  ++  + ++
Sbjct: 237 VKQNYPNSFICTQKIAHYVKENYDFDMSVDEKVYLTIHIQRMKVS 281


>UniRef50_C7TGE9 Transcriptional antiterminator, BglG family n=2 Tax=Lactobacillus
           rhamnosus RepID=C7TGE9_LACRL
          Length = 283

 Score = 52.1 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +   I     + ++   ++    + +      + H+  AL R  +G+ I   ++ +  
Sbjct: 64  NEVPYAILSVSEKFIDEAASQLKQKLNASLHVSLVDHIYHALKRYEKGQLIS--NSLIFE 121

Query: 72  -ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAAN 117
            E      ++      Q++ ++  +++   E G++  +L    M   
Sbjct: 122 IENLYPEEFELSEHFLQMIAEQEGVQLPVDEAGFIAMHLINAEMNEE 168



 Score = 46.0 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAEL- 73
            I K +  ++N+++    +            +TH+   + R  +G  +   D EL   + 
Sbjct: 174 SIMKEVYAILNIIKYSMDVEYDERSLSYYRLLTHLKFFVQRVMKGSMLASDDAELYMLVS 233

Query: 74  -AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
                 ++   ++ + +   F + +   E  YL+ +L  L     E
Sbjct: 234 RKYPDAYRVANKITKYVANAFHVVLPAEEVLYLMIHLNRLKTRETE 279


>UniRef50_C9KQ73 Putative transcription antiterminator GlcT n=1 Tax=Mitsuokella
           multacida DSM 20544 RepID=C9KQ73_9FIRM
          Length = 273

 Score = 52.1 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI-EPLD 66
           L     +D    +   +V++         +  +       H+A AL R RRG  +  PL 
Sbjct: 63  LQRVNGLDPHAVELAARVLDEARKSFPA-MTDDILLPMADHIAMALERCRRGIRLPNPLQ 121

Query: 67  NELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           ++++  +     ++   Q    + +E  L + P E GYL  +++ 
Sbjct: 122 HDIM--VMFPDEYRIAEQGLHAIEREEGLSLPPEEAGYLSLHIHA 164



 Score = 40.6 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 19  CKGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQS 76
            +     +  +ETE  + +     + T  ++H+   ++R R  EE+    +E + ++   
Sbjct: 178 IRLAADCIAKIETELGISLRRTELKYTRLISHVCYMILRIRAQEEVPLQMDEYVRKMY-P 236

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             +Q   +L + L ++  L ++  E   L  ++
Sbjct: 237 RAYQLAEKLCKALEEKLCLPISSAEVTLLAIHI 269


>UniRef50_Q184X6 Transcription antiterminator n=2 Tax=Clostridium difficile
           RepID=Q184X6_CLOD6
          Length = 277

 Score = 52.1 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 9/105 (8%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I     + + +++ +   E    +          H++  L R   G   +      + ++
Sbjct: 66  IPLKDVELVSEIIQMGREELGDNLNDSILITLSEHISYMLKRMDEGLVFQSPLQWEIRQI 125

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
              + +    +  + L K+    +   E  ++  +     +   +
Sbjct: 126 Y-PNEYNFSKKAVEYLRKKLDKNIPDSEIAFITIHFANAQLETKD 169



 Score = 42.9 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLA--ELAQ 75
           K +  V+++++    + +       T  ++H+   + R   GE    +D  LL   ++  
Sbjct: 178 KIIDNVLDIIKYHYGIEINEYSFDYTRFISHLRCFIKRQLSGEN-TNVDTSLLDIIKMKY 236

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
            S +    ++   L K +  +++  E  YL  +L
Sbjct: 237 KSDYNCAKKVKNFLEKTYKWKISENELLYLTLHL 270


>UniRef50_A6LPX9 Sigma-54 factor, interaction domain-containing protein n=1
           Tax=Clostridium beijerinckii NCIMB 8052
           RepID=A6LPX9_CLOB8
          Length = 974

 Score = 52.1 bits (124), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 37/105 (35%), Gaps = 2/105 (1%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
           LN+     ++  ++      ++ ++  +    + +        H+   + R   G+ I  
Sbjct: 479 LNINELKTIVRPEVINITEGILELVREKYKF-INNSFFIALAIHINFTIERVMNGKVITK 537

Query: 65  LDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
             N  + +       +   ++  ++ K   L++   E  Y+   +
Sbjct: 538 -SNIHMEKATMVQEMKIAEKIRIMIEKSTKLKIPKEETTYIAIYI 581


>UniRef50_A4IML7 Regulatory protein n=10 Tax=Firmicutes RepID=A4IML7_GEOTN
          Length = 953

 Score = 51.7 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/109 (13%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           +  R +L     ++  D+      +V  +E +    +  +       H+ +A+ R R G 
Sbjct: 481 IRNRRDL---EKMVTPDVLALTEAMVVYVEKKLGRRLAKKVTYALALHIQTAINRLRAGT 537

Query: 61  EIEPLDNELLAELAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
            +       L E+  +    +   +    ++ ++  +++   E G+L  
Sbjct: 538 IVSHPK---LNEVRAAYKHEFAVALDCLHLMEEKMHIDLPIDEAGFLTM 583


>UniRef50_Q67LZ9 Putative PTS system, IIA component n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67LZ9_SYMTH
          Length = 634

 Score = 51.7 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 11/113 (9%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVR-SEQGTM-AMTHMASALMRSRRGEEIEPLDNE 68
             ++     +   Q+  ++ET   + +R   +  M    H+     R RRGE +E   N 
Sbjct: 265 RDIVHPADLELAEQMAVLVETRLGIGLRQDREFLMGLALHLRPIAERLRRGEAVE---NP 321

Query: 69  LLAELAQSSHWQAVVQLHQVLLKEF----ALEVNPCEEGYLLANLYGLWMAAN 117
           LL E+     + A     Q + +       L V   E GYL  ++        
Sbjct: 322 LLDEVQA--KYPAACLAAQDVGRALSAIWGLTVPEPEIGYLAIHIAAALEREK 372


>UniRef50_D2EKZ6 Transcription antiterminator n=1 Tax=Pediococcus acidilactici 7_4
           RepID=D2EKZ6_PEDAC
          Length = 284

 Score = 51.7 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           DK I   + ++V+  E    + V        + H++ AL R ++G+ I    + L+ E+ 
Sbjct: 66  DKKIITLVNKIVDYGENYLKVKVTDYLYLALLDHISFALKRGQKGQFIA---SPLVWEVK 122

Query: 75  Q--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           +    +++  ++    L + + +     E   +  +   
Sbjct: 123 KFYPQYYEIGIKAINWLNQTYEVNFPEDEAIPISLHFIN 161


>UniRef50_O33618 GlcA/glcB genes antiterminator n=7 Tax=Staphylococcus
           RepID=GLCT_STACT
          Length = 287

 Score = 51.7 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D ++ + +++ ++++       V  +       H+  A  R ++ + I+   N  L E  
Sbjct: 72  DDNVLQTIIEAMDIITHADRTVVDKDLMVALTDHILFAYKRIKQHQFIK---NPFLIETK 128

Query: 75  Q--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
           Q  S  +Q  V + + L K   +E    E G++  ++    
Sbjct: 129 QLYSESYQIAVSVIEHLNKLLDIEFPEDEIGFIALHIASSK 169



 Score = 45.6 bits (107), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 8   LCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN 67
           L E  + ++ I K ++  +   + +  +   S Q    + H+   + R ++GE I+  D 
Sbjct: 174 LHEVRLTNEIINKSIL--IMEHDLKYKIDTNSIQYQRFIRHIQFLIRRLQKGEIIQVNDE 231

Query: 68  -ELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              + +      +   V++ +++ +   +EV   E  YL  ++
Sbjct: 232 FGNMLKAHYPLCYNIAVKIIKMMQQHLDVEVYEAELIYLTLHI 274


>UniRef50_C9A770 Transcriptional antiterminator bglG/CAT RNA-binding protein n=4
           Tax=Enterococcus RepID=C9A770_ENTCA
          Length = 282

 Score = 51.7 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I     +   ++V + +     P+ S        H+  A+ R ++G  +    N L  E+
Sbjct: 66  IPLYYFEMTKEIVQLAQKMLPYPLNSTIYLTLSDHLHFAVERQQKGLSVT---NRLYWEI 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
               +  ++A  Q  ++L +++ +E+   E   +  +L   
Sbjct: 123 KNYYTDEFRAAEQALRLLKEKYQIELPEEEASNIAFHLINA 163


>UniRef50_C0ETM8 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM
           3353 RepID=C0ETM8_9FIRM
          Length = 711

 Score = 51.7 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             ID ++   +  ++   + +  + +        + + +  + R ++G  I+ L  +  A
Sbjct: 198 NEIDGEVMAEVNHILGGCQKQLGMQLSDNGYLHLLVYTSLCVQRMQKGRFIKEL-KQSYA 256

Query: 72  ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
           E++    +     + + L + F L ++  E  Y+   + G
Sbjct: 257 EISIQPEYAVSEYIMKELRQFFHLSISVDETIYMAVFISG 296


>UniRef50_Q184X1 Transcription antiterminator n=6 Tax=Clostridium difficile
           RepID=Q184X1_CLOD6
          Length = 635

 Score = 51.7 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDN-ELL 70
            + D D    +  ++  LE      +        +TH+   L R   G +IE  +  E+ 
Sbjct: 196 NLFDIDSIIFVETIITELEYNLGYTINQPYYINLITHILICLKRIEEGNQIESQEEREIS 255

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
            +      ++ V  L   +   + +++   E  Y+   L 
Sbjct: 256 VDNLDELVYKNVTTLIDKIENRYRVKITKDELMYIYIFLV 295


>UniRef50_B0N7R7 Putative uncharacterized protein n=1 Tax=Clostridium ramosum DSM
           1402 RepID=B0N7R7_9FIRM
          Length = 201

 Score = 51.7 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 44/120 (36%), Gaps = 5/120 (4%)

Query: 2   ETRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEE 61
           +     L     I  ++     ++++         +          H+  A+ R  +G  
Sbjct: 61  KQNNRFLELIKDIPVNVLNVTDEIIDFARKGLDKELNDGIYITLTDHINYAIERYLQGIN 120

Query: 62  IEPLDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
           ++   N LL E+ Q     ++   +  +++ ++  + ++  E G++  +     + +  E
Sbjct: 121 VQ---NPLLWEIRQFYQEEYKIAAEALKIINQKLMVNLSEDEVGFIALHFVNAELNSEME 177


>UniRef50_B6GB96 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM
           13279 RepID=B6GB96_9ACTN
          Length = 283

 Score = 51.7 bits (123), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 5/108 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           +  D+     +V++++  E    V      +   H+A A+ R ++G      D  L  ++
Sbjct: 62  LPADVLIFTAKVMDIVSNELPYEVSPNAVLIMADHLAFAIARQKKG---ICFDMTLAYDV 118

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            Q     ++    +   L +E  +E+   E   +  NL      A  E
Sbjct: 119 RQLYPLEYKIGRYIVARLRQEMGVELPHEEIASIAMNLVNAKTGAEAE 166


>UniRef50_Q03XN7 Transcriptional antiterminator n=1 Tax=Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293 RepID=Q03XN7_LEUMM
          Length = 663

 Score = 51.7 bits (123), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 19  CKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH 78
              +  +V     E  + +        + ++A ++ R + G E++    ++  E+   S 
Sbjct: 194 FDQITIIVLDECREAGIHLTDFTIQNIVLYIALSVQRLKCGFELQAAPVDINPEIRNVS- 252

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                ++   +    AL+    E  YL   L  
Sbjct: 253 -DVARKIFSRIESGLALKFPESEVDYLTIQLMA 284


>UniRef50_A7B640 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC
           29149 RepID=A7B640_RUMGN
          Length = 278

 Score = 51.3 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 17  DICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQ- 75
           +  K    ++   +    L +          H+  A+ R ++G  I+P +  LL E+ + 
Sbjct: 69  EHVKVSSDIITYAKENLKLKLNQSIYVTLTDHINFAITRYQQG--IKPQN-ALLWEIKRF 125

Query: 76  -SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            S  ++  +   + + ++  + +   E G++  +    
Sbjct: 126 YSREYELGMYAVKTIEEKLRIRLPEDEAGFIALHFLNA 163



 Score = 47.1 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 20  KGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNEL--LAELAQ 75
             + +++ ++E +  + +          +TH+   L R  R E +   ++EL  L +   
Sbjct: 177 NLVKKILEIVEEKLQIELDETSLHYERFVTHIKFLLQRVYRKELLPDEESELAELMQKKY 236

Query: 76  SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +     +   + +E    ++  E  YL  ++
Sbjct: 237 QKEYDCSKMVAAYIEEETKCSLSGEEIMYLAIHI 270


>UniRef50_C8P1A7 SACPA operon antiterminator (SacT) n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P1A7_ERYRH
          Length = 289

 Score = 51.3 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 45  AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGY 104
            +TH+  A  RS     +     ++L E      ++    L  +L +EF +++   E GY
Sbjct: 220 LITHLKFAFKRSEDNVTLTNPLIDILRE-RYCEAYEISEDLALMLDQEFNIQLPESEIGY 278

Query: 105 LLANLYGL 112
           +  ++Y L
Sbjct: 279 IALHIYNL 286



 Score = 46.7 bits (110), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 1/98 (1%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
           D  +       +   E   +           + H+  A+ R     ++     E    L 
Sbjct: 83  DDQVLLVTEAAIAYAEKTLNYKFDESIHISLLDHINFAIYRYHNRVKMSNFFTEEYY-LM 141

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
            S  +     + +++  E  +E+   E G ++ +L+  
Sbjct: 142 YSELYDISKHMVEMINDELDVELPHSEVGSVILHLHAA 179


>UniRef50_UPI000196B5EC hypothetical protein CATMIT_00421 n=1 Tax=Catenibacterium mitsuokai
           DSM 15897 RepID=UPI000196B5EC
          Length = 231

 Score = 51.3 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPV--RSEQGTMAMTHMASALMRSRRGEEI 62
           L+   E  +ID++     ++ V  +     L +    +       H   A+ R +  E++
Sbjct: 120 LDFFSECDIIDQETESITLEAVQEINNRLGLNLKKNDDFYQGLSMHFYPAIQRLKNDEQL 179

Query: 63  EPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
                    +    + +Q  + L+ V+ + +    N  E  Y+  +     
Sbjct: 180 HDNVLTDKIKTENETEYQCAMILNDVVKEHYHKSFNEDELAYIALHFGTAL 230



 Score = 47.1 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 22  MMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQA 81
           +   +    TE ++ +          H+A ++ R   G  IE + +  + +L Q++ +Q 
Sbjct: 26  IFATIKKYVTEANMNISDTVMDNLSIHLALSITRELSGSYIE-MSSSQIEQLKQANTYQI 84

Query: 82  VVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
              +   L K++ ++++  +  Y    L  + +
Sbjct: 85  SQLIIYDLSKKYDVKISEDDICYCAMYLSNMTL 117


>UniRef50_C3RR39 Predicted protein n=2 Tax=Bacteria RepID=C3RR39_9MOLU
          Length = 628

 Score = 51.3 bits (122), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 1   METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGE 60
           ++ +L L      I K+    +  +V     +    +        + H+  ++ R + G 
Sbjct: 167 IKEQLELQLGHSTIKKEWLATISDIVVDSLMKAKYRISDVVLQNLVLHICVSIQRMQHGI 226

Query: 61  EIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            I   DN  +A            ++   L   +   +   E  +L  +L G
Sbjct: 227 YI---DNPQMAR-QYGHEHVIAKKILDELASIYHFIITENEISFLAIHLLG 273


>UniRef50_C0Z8L8 Transcriptional regulatory protein n=1 Tax=Brevibacillus brevis
           NBRC 100599 RepID=C0Z8L8_BREBN
          Length = 892

 Score = 51.3 bits (122), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A +ID  I   + ++V   E +    +  +       H+ ++  R  +G++I  ++ ++ 
Sbjct: 430 ARIIDPFIIHLVEEIVRFAEAKLEKILSQKVIFGLALHIQTSKERLAQGKQI--VNPQIN 487

Query: 71  A-ELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLA 107
              +     +   ++  +++ +   +++   E GYL  
Sbjct: 488 HVRIKYKKEFAVALECVRMIEEAILMDLPIGEAGYLTM 525


>UniRef50_Q185K2 Putative sigma-54 interacting transcription antiterminator n=9
           Tax=Clostridium difficile RepID=Q185K2_CLOD6
          Length = 979

 Score = 51.3 bits (122), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 2/99 (2%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
            G + +   + M +V+  ++ +    V          H+  A+ R + G+ I     + +
Sbjct: 490 GGQLKESTLEIMDKVIVFIKEQFK-HVNQGLYLALAIHIEHAIGRIKDGKTIINPSLDKI 548

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANL 109
              +    ++    +  ++     +     E GYL   +
Sbjct: 549 KA-SMPMEYELSRYIMGIVEDLTQVTFPEDELGYLAYYI 586


>UniRef50_Q9KG92 BH0220 protein n=2 Tax=Bacillales RepID=Q9KG92_BACHD
          Length = 701

 Score = 51.3 bits (122), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 1/104 (0%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNEL 69
              +   +  + +  V++  E    +    +            + R  +G+ I+ +    
Sbjct: 193 NGRIFTIEELQKVYDVISESEKVLKIQYTDDVLHSLSLRFLLFMKRVAKGKFIK-VHPLE 251

Query: 70  LAELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
              L  +  ++A   +   L + F +     E  YL  ++    
Sbjct: 252 KQVLKGTKEYEAAKVMSFKLEQAFGVHYPDEEVLYLTTHILSSK 295



 Score = 43.3 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 10  EAGVIDKDICKGMMQVVNVLETECHLPVRSEQGT--MAMTHMASALMRSRRGEEIEPLDN 67
           E+    +++   +  +VN  +    +    ++        H+  A  R + G E+E   N
Sbjct: 304 ESRKESQELTHIVTSMVNDFQKYACVVFEEKELLEKNLFFHIKPAFYRIKYGLEVE---N 360

Query: 68  ELLAELA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
            +   +       +    ++   L +     VN  E  ++  +  G
Sbjct: 361 NIAESIKTSYPELFLLTRKVVHYLERYVGKSVNDNEVAFITMHFVG 406


>UniRef50_C9BK18 Transcriptional antiterminator bglG/CAT RNA-binding protein n=12
           Tax=Enterococcus RepID=C9BK18_ENTFC
          Length = 291

 Score = 51.3 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/104 (13%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
            I  +      +V+ ++      P+ S        H+  A+ R R   ++  +   +L E
Sbjct: 82  QIPIEFMDFAEEVIELITARISSPLDSNIYITLTDHIYFAIQRKREDRDVTAI---MLPE 138

Query: 73  LA--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           +     + +   V++ + +   +  E+   E G++  ++    +
Sbjct: 139 MRFLYPNEYDIAVEVVERINHRYQTELGSNEVGFITMHIINAEL 182



 Score = 40.9 bits (95), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQ--GTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
              I +    +++ LE         E       M H+   + R    EE    +     E
Sbjct: 190 SLKIVEMTTTILSHLEKSYSNVYDKESLTYHRLMVHIKFLVKRLIYQEETPVENIGFFTE 249

Query: 73  -LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLW 113
               S  +   +++  ++ ++F L +   E  YL  +L  ++
Sbjct: 250 TFKHSKAYCTALKIKDIIEQQFQLAIQENEIIYLAIHLARIY 291


>UniRef50_B1MZ35 Transcriptional antiterminator bglG:CAT RNA-binding region n=2
           Tax=Bacilli RepID=B1MZ35_LEUCK
          Length = 286

 Score = 51.3 bits (122), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             I   I     ++V+  E   +  +      M   H+  A+ R+  G  I    N    
Sbjct: 64  EAIPITILDATRRIVSEAEKRLNTKLNPMLYIMLSDHLNFAIERAMTGINIT---NRAFW 120

Query: 72  ELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAA 116
           E+       +   +   QV+ ++  + +   E   +  +L     A 
Sbjct: 121 EMKNYYPEEFDLGLFALQVIEQQMNIVLPEEEAANIAFHLINAQTAE 167


>UniRef50_C4L0D3 Transcriptional antiterminator, BglG n=10 Tax=Bacillales
           RepID=C4L0D3_EXISA
          Length = 282

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +       +++  E             +   H++ A+ R   G     L N+LL E+
Sbjct: 63  IPVEHFTVSEDIISYAEKRLETSFNEHIHIVLTDHISFAIEREMDG---ISLRNKLLNEI 119

Query: 74  A--QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANE 118
                + ++  +   + + ++  +++   E  ++  +++ + +   +
Sbjct: 120 KILYRNEYEIGLWAIEHIAEKLNVQMPKDEAAFIALHIHTMKVKGGD 166



 Score = 47.1 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/102 (10%), Positives = 38/102 (37%), Gaps = 5/102 (4%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL--AQSS 77
             +  +   L  +  +          +TH+   + R    +    +D ++L  +    +S
Sbjct: 179 DMIQSISRRL--DVSIEEDDLSYQRLLTHLRFVMDRVNHYDH-HTIDEDMLRMIQTKFTS 235

Query: 78  HWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEE 119
            +     + + + + + + +   E GY+  ++  L    +++
Sbjct: 236 AYACASDVAKEMEETYGIVLPESELGYITLHIQRLQDQHHQK 277


>UniRef50_C6CKX7 Transcriptional antiterminator, BglG n=1 Tax=Dickeya zeae Ech1591
           RepID=C6CKX7_DICZE
          Length = 289

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 11  AGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELL 70
           A  +  +I +    +V +++T+    +          H+A AL   R G  I+   N L 
Sbjct: 63  AQEVPLEILQLTADIVEMVKTQLPQKLSEGIYVTLADHLAFALQCQRNGTVIQ---NPLQ 119

Query: 71  AELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
            E+       +    Q   ++ +   + +   E   +  ++    +
Sbjct: 120 WEVRHFYKQEFAVAEQALALIREALGVALPNDEACSIALHIVNAEL 165


>UniRef50_B1CAJ2 Putative uncharacterized protein n=1 Tax=Anaerofustis
           stercorihominis DSM 17244 RepID=B1CAJ2_9FIRM
          Length = 916

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP--LDNELL 70
           ++D  I       +N  E + +  + S      + H+ S + R   G+ IE   +++ +L
Sbjct: 455 IVDAKILDTCDDAINFAEMKLNRKLSSRIKIGMIMHINSLVSRISNGDSIENKKINDIVL 514

Query: 71  AELAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                   ++    +  +L +   +++   E G+L   L  
Sbjct: 515 N---NPKEFKIAKFIFTLLEENLNIKIPKYEIGFLTMFLCA 552



 Score = 39.0 bits (90), Expect = 0.052,   Method: Composition-based stats.
 Identities = 10/88 (11%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 20  KGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSH- 78
           + ++    ++ +E  L    +     + H    + R  + E I    + +   +A+  + 
Sbjct: 827 ELLINSFEIIFSELSLTKTKDIFLRFIMHTGCMIERVLKNETI--PYSNVKKFIAKHKNK 884

Query: 79  WQAVVQLHQVLLKEFALEVNPCEEGYLL 106
           ++ + +  +   + F +++   E  Y++
Sbjct: 885 YETIKKGLEKCEESFNIKIPDDEIAYII 912


>UniRef50_B0MAW7 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MAW7_9FIRM
          Length = 642

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           ID+     +  ++  +       +       A+  +   + R   G  I+P + ++  +L
Sbjct: 184 IDERQLAKIKNILTDIFVNYKYHIMDTDFNNAILFLNIMICRMGEGFYIQPGELDISEQL 243

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYG 111
                ++    +   + + F ++V   E  Y    L G
Sbjct: 244 GN--EYEIAKAVFGKISRRFFIKVPDEEIRYFSLYLKG 279


>UniRef50_Q18DC6 Beta-glucoside bgl operon transcription antiterminator n=7
           Tax=Firmicutes RepID=Q18DC6_CLOD6
          Length = 278

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 5   LNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEP 64
              L     I  DI K   +++   E   +         +   H   A+ R R+G +I  
Sbjct: 59  KQFLELMDDIPVDILKITQEIIVEAEKLLNSSFNKNLYLILADHFNFAIERMRKGIKIT- 117

Query: 65  LDNELLAELAQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
             N +  E+     + ++  +    ++ +   +++   E   +  +    
Sbjct: 118 --NRVFWEIKNYYPNEFKVGMVAIYMVEERLGIQLPEEEAANIAFHFANA 165


>UniRef50_C5ENS0 Transcription antiterminator licT n=1 Tax=Clostridiales bacterium
           1_7_47FAA RepID=C5ENS0_9FIRM
          Length = 284

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 5/110 (4%)

Query: 13  VIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAE 72
           +I ++  +   ++V+   T     V          H+  A+ R ++G      DN +   
Sbjct: 65  LISEEYIEVSKKIVDYGRTVLKTGVHDSIYVTLSDHIELAVSRKKKG---IAFDNAMTWS 121

Query: 73  LAQS--SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWMAANEEV 120
           + ++    +       +++  E  + +   E G +  +     +    EV
Sbjct: 122 IKKTYREEYHIGEVALKIIQIECGVTLPEEEAGLIALHFVNAKIHNEPEV 171


>UniRef50_C3RIJ4 Transcription antiterminator n=4 Tax=Bacteria RepID=C3RIJ4_9MOLU
          Length = 281

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 12  GVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLA 71
             +     +   ++VN    E       E       H++ A+ R +       L N +L+
Sbjct: 68  ETVPAIYFEITNKIVNQANKELDTDFSGEIFLAISDHISFAVKRKKEEIY---LPNVVLS 124

Query: 72  E--LAQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGLWM 114
           E  +     ++  +     + ++  + ++  E GY+  +L    +
Sbjct: 125 ETKVLYKKEYKVGLWALDYIEEKTGIRLDDDEAGYIALHLVNFSL 169


>UniRef50_B6FR13 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=B6FR13_9CLOT
          Length = 293

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +  +    ++   E +     R         H++ A+ R R GE+I     E +  L
Sbjct: 84  IAPEYLEIANAILVEAEEKFGRIDRRILFP-LADHISFAVERIRHGEQISNPLTEDIRAL 142

Query: 74  AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
             S  +Q   +L ++L +  ++E++  E GY+  +++  
Sbjct: 143 FGS-EYQVASKLKEILKERLSVEIDSHEIGYVALHIHSA 180


>UniRef50_B0MED2 Putative uncharacterized protein n=1 Tax=Anaerostipes caccae DSM
           14662 RepID=B0MED2_9FIRM
          Length = 908

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 3   TRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEI 62
            + NLL    +ID  +   +  ++   E +    +          H+ +   R  +G   
Sbjct: 436 EKKNLLK---IIDAKVYYAVEDILQFAEIKLGRKMPERIKVGIAMHVNAMTERISKG--- 489

Query: 63  EPLDNELLAEL--AQSSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
             L  + L ++       +Q    + ++L +E  ++V   E GY    L  +
Sbjct: 490 IMLKEKELNDIVLNHPQEFQTAKVMLRLLEEELGIQVPKQEIGYFTMFLCAM 541



 Score = 40.6 bits (94), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 15  DKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELA 74
            K +    M+ +       H+ V  E     + H+   L R  + E +   + E+L +  
Sbjct: 808 PKKMAGQAMESLKESVRALHMEVTRELAVRYVIHLCCMLERLIQEEVLPHQETEILKK-K 866

Query: 75  QSSHWQAVVQLHQVLLKEFALEVNPCEEGYLL 106
               +  V +  + L     L++   E  YL+
Sbjct: 867 YKHIFDTVKKSLRPLEDCLHLQIPDSETAYLV 898


>UniRef50_B3DQG5 Beta-glucoside operon antiterminator n=24 Tax=Actinobacteridae
           RepID=B3DQG5_BIFLD
          Length = 279

 Score = 51.0 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 14  IDKDICKGMMQVVNVLETECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAEL 73
           I  +I + +++ +            +        H+A+A+ R RRG +I      LL E+
Sbjct: 66  IPPEIIRVVVESMQEAGLGERETGSTTLVMALSDHVANAVERVRRGIDITYP---LLGEV 122

Query: 74  AQ--SSHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLYGL 112
           +      +     +   L     + +   E   L  +L   
Sbjct: 123 SNLYPQEYAQGRAMLASLNARLDVTLPDGEATALAMHLVNA 163



 Score = 48.3 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/94 (8%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 21  GMMQVVNVLETECHLPVRSEQGTM--AMTHMASALMRSRRGEEIEPLDNELLAELAQ--S 76
            + Q++++++    + +      +   +TH+    +R  + +++      ++  + +   
Sbjct: 179 VIQQLLDIIDHSYGITLDRSSVNVGRFITHLRYLFVRIHQHQQLTDEPAPVMKVIRESYP 238

Query: 77  SHWQAVVQLHQVLLKEFALEVNPCEEGYLLANLY 110
           +  +    +  +L      +++  E  YL  ++ 
Sbjct: 239 AALRCARTIASLLELRLDTDISDDETAYLAMHVA 272


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.320    0.160    0.431 

Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 675,254,677
Number of Sequences: 3077464
Number of extensions: 20605804
Number of successful extensions: 78926
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 394
Number of HSP's successfully gapped in prelim test: 565
Number of HSP's that attempted gapping in prelim test: 76737
Number of HSP's gapped (non-prelim): 1883
length of query: 120
length of database: 1,040,396,356
effective HSP length: 87
effective length of query: 33
effective length of database: 772,656,988
effective search space: 25497680604
effective search space used: 25497680604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 88 (38.3 bits)
