BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (265 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77634 Uncharacterized HTH-type transcriptional regulat... 551 e-156 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 250 3e-65 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 189 8e-47 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 175 1e-42 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 167 2e-40 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 150 3e-35 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 110 6e-23 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 108 2e-22 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 105 2e-21 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 102 2e-20 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 101 3e-20 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 99 2e-19 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 97 6e-19 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 95 3e-18 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 93 8e-18 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 90 6e-17 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 90 6e-17 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 88 3e-16 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 88 4e-16 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 88 4e-16 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 86 2e-15 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 85 2e-15 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 84 7e-15 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 82 2e-14 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 79 2e-13 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 79 2e-13 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 78 3e-13 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 78 3e-13 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 78 3e-13 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 78 4e-13 UniRef50_B9JBF3 Transcriptional regulator protein n=1 Tax=Agroba... 76 1e-12 UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonel... 75 2e-12 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 75 2e-12 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 75 3e-12 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 73 8e-12 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 72 1e-11 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 71 4e-11 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 71 5e-11 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 70 5e-11 UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=... 70 6e-11 UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=D... 69 1e-10 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 69 2e-10 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 68 3e-10 UniRef50_Q471G1 Transcriptional regulator, AraC family n=6 Tax=B... 68 3e-10 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 68 3e-10 UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=g... 68 4e-10 UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 T... 66 1e-09 UniRef50_C4ZIP3 Transcriptional regulator, AraC family n=1 Tax=T... 65 3e-09 UniRef50_B0TKQ1 Transcriptional regulator, AraC family n=5 Tax=G... 65 3e-09 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 64 6e-09 UniRef50_Q1YPC6 Transcriptional regulator OruR n=4 Tax=unclassif... 64 7e-09 UniRef50_A7IPD7 Helix-turn-helix-domain containing protein AraC ... 63 9e-09 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 63 1e-08 UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n... 63 1e-08 UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmone... 63 1e-08 UniRef50_A1TVA8 Transcriptional regulator, AraC family n=17 Tax=... 62 2e-08 UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photob... 62 2e-08 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 62 2e-08 UniRef50_D1E8F4 AraC protein n=21 Tax=Neisseria RepID=D1E8F4_NEIGO 62 2e-08 UniRef50_A3VM96 Helix-turn-helix, Fis-type protein n=1 Tax=Rhodo... 62 2e-08 UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter ... 60 6e-08 UniRef50_Q5P369 Transcriptional regulator, AraC family, n=5 Tax=... 60 6e-08 UniRef50_C1DS97 Transcriptional regulator, AraC family n=2 Tax=G... 60 8e-08 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 60 9e-08 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 59 1e-07 UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=P... 59 1e-07 UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escheri... 59 2e-07 UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escheric... 59 2e-07 UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=... 59 2e-07 UniRef50_A3YBQ0 Transcriptional Regulator, AraC family protein n... 58 3e-07 UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family ... 58 3e-07 UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein ... 58 3e-07 UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Gr... 58 4e-07 UniRef50_A0Z5W5 Transcriptional Regulator, AraC family protein n... 58 4e-07 UniRef50_B7RTY0 Transcriptional regulator, AraC family n=1 Tax=m... 57 4e-07 UniRef50_D1AE55 Transcriptional regulator, AraC family n=1 Tax=T... 57 4e-07 UniRef50_C9QLV9 Transcriptional regulator AraC family n=1 Tax=Vi... 57 5e-07 UniRef50_C9YEB3 Putative uncharacterized protein n=1 Tax=Curviba... 57 6e-07 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 57 6e-07 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 57 6e-07 UniRef50_Q2RVL5 Transcriptional regulator, AraC family n=2 Tax=A... 57 7e-07 UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Pr... 57 8e-07 UniRef50_A4ABA7 Transcriptional regulator (AraC family protein) ... 57 8e-07 UniRef50_Q89EK0 Transcriptional regulatory protein n=2 Tax=Brady... 57 8e-07 UniRef50_B2UHA2 Transcriptional regulator, AraC family n=2 Tax=R... 57 9e-07 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 57 9e-07 UniRef50_Q1N5E2 Transcriptional Regulator, AraC family protein n... 57 9e-07 UniRef50_C6LF57 Transcriptional regulator, AraC family n=1 Tax=B... 57 9e-07 UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=A... 57 9e-07 UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=un... 56 1e-06 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 56 1e-06 UniRef50_A1U2L9 Transcriptional regulator, AraC family n=2 Tax=M... 56 1e-06 UniRef50_Q397M3 Transcriptional regulator, AraC family n=2 Tax=B... 56 1e-06 UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n... 56 1e-06 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 56 1e-06 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 56 1e-06 UniRef50_Q46UH7 Helix-turn-helix, Fis-type n=1 Tax=Ralstonia eut... 56 1e-06 UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein ... 56 1e-06 UniRef50_Q1LED5 Transcriptional regulator, AraC family n=3 Tax=B... 55 2e-06 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 55 2e-06 UniRef50_Q2S7F1 AraC-type DNA-binding domain-containing protein ... 55 2e-06 UniRef50_B4EPV9 AraC family regulatory protein n=5 Tax=Burkholde... 55 2e-06 UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=... 55 3e-06 UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Esch... 55 3e-06 UniRef50_B0KFL7 Transcriptional regulator, AraC family n=1 Tax=P... 55 3e-06 UniRef50_A6D1B1 AraC-type DNA-binding domain-containing protein ... 55 3e-06 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 55 3e-06 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 55 3e-06 UniRef50_B5WR29 Transcriptional regulator, AraC family n=2 Tax=B... 54 4e-06 UniRef50_B5J4U5 Transcriptional regulator, AraC family protein n... 54 4e-06 UniRef50_D1TMA7 AraC family transcriptional regulator n=1 Tax=Bu... 54 4e-06 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 54 4e-06 UniRef50_A5V7R9 Transcriptional regulator, AraC family n=2 Tax=S... 54 6e-06 UniRef50_B5WCL9 Transcriptional regulator, AraC family n=1 Tax=B... 54 6e-06 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 54 6e-06 UniRef50_UPI0001C362BB response regulator receiver protein n=1 T... 54 6e-06 UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=V... 54 6e-06 UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio... 54 7e-06 UniRef50_C6JDJ0 Two component transcriptional regulator n=1 Tax=... 54 7e-06 UniRef50_C5C1L5 Transcriptional regulator, AraC family n=1 Tax=B... 54 7e-06 UniRef50_Q397P9 Transcriptional regulator, AraC family n=2 Tax=P... 54 8e-06 UniRef50_A3YC06 Transcriptional regulator, AraC family protein n... 53 9e-06 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 53 9e-06 UniRef50_P23774 987P fimbrial operon positive regulatory protein... 53 9e-06 UniRef50_Q5LKF5 Transcriptional regulator, AraC family n=1 Tax=R... 53 9e-06 UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=R... 53 9e-06 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 53 1e-05 UniRef50_A0Z5W8 Transcriptional regulator, AraC family protein n... 53 1e-05 UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=R... 53 1e-05 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 53 1e-05 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 53 1e-05 UniRef50_A0NPB0 Transcriptional regulator, AraC family protein n... 53 1e-05 UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein ... 53 1e-05 UniRef50_A0Y8B8 Probable transcriptional regulator protein, AraC... 53 1e-05 UniRef50_A8LV09 Transcriptional regulator, AraC family n=1 Tax=S... 53 1e-05 UniRef50_A2SEG7 Transcriptional regulator, AraC family n=1 Tax=M... 53 1e-05 UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reineke... 53 1e-05 UniRef50_B1MF91 Probable transcriptional regulatory, AraC family... 53 1e-05 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 53 1e-05 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 53 1e-05 UniRef50_B7KQC6 Transcriptional regulator, AraC family n=2 Tax=M... 53 1e-05 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 53 1e-05 UniRef50_B9K5W8 Transcriptional regulatory protein n=1 Tax=Agrob... 52 1e-05 UniRef50_A6FA01 Probable transcriptional regulator n=1 Tax=Morit... 52 1e-05 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 52 1e-05 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 52 2e-05 UniRef50_C9P783 AraC-type DNA-binding domain-containing protein ... 52 2e-05 UniRef50_B2U5Z6 Transcriptional regulator, AraC family protein n... 52 2e-05 UniRef50_A4XVD3 Transcriptional regulator, AraC family n=1 Tax=P... 52 2e-05 UniRef50_A9AT03 Transcriptional regulator, AraC family n=13 Tax=... 52 2e-05 UniRef50_A5EI80 Transcriptional regulator, AraC family n=2 Tax=B... 52 2e-05 UniRef50_Q2G532 Transcriptional regulator, AraC family n=1 Tax=N... 52 2e-05 UniRef50_B1KIM8 Transcriptional regulator, AraC family n=5 Tax=S... 52 2e-05 UniRef50_C7HUW6 Putative uncharacterized protein n=1 Tax=Anaeroc... 52 2e-05 UniRef50_Q1ZTS4 Putative transcriptional regulator (AraC family)... 52 2e-05 UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regul... 52 2e-05 UniRef50_C8PSP6 Transcriptional regulator, AraC family n=1 Tax=T... 52 2e-05 UniRef50_A9GK31 Transcriptional regulator, AraC family n=1 Tax=S... 52 2e-05 UniRef50_Q28K70 Transcriptional regulator, AraC family n=1 Tax=J... 52 2e-05 UniRef50_A9ATI3 AraC family transcriptional regulator n=26 Tax=B... 52 2e-05 UniRef50_UPI000197C3AF transcriptional activator RhaS n=1 Tax=Pr... 52 2e-05 UniRef50_A4BGF4 Transcriptional regulator, AraC family protein n... 52 2e-05 UniRef50_D1Y5U1 Putative two-component response regulator n=1 Ta... 52 2e-05 UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=... 52 2e-05 UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF... 52 2e-05 UniRef50_B7RWU1 Transcriptional regulator, AraC family n=1 Tax=m... 52 3e-05 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 52 3e-05 UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, A... 52 3e-05 UniRef50_B6B356 Putative uncharacterized protein n=1 Tax=Rhodoba... 52 3e-05 UniRef50_Q2SDE8 AraC-type DNA-binding domain-containing protein ... 52 3e-05 UniRef50_P72171 Ornithine utilization regulator n=7 Tax=Pseudomo... 52 3e-05 UniRef50_A3WY00 Transcriptional regulator, AraC family protein n... 52 3e-05 UniRef50_A1U5F4 Transcriptional regulator, AraC family n=3 Tax=M... 52 3e-05 UniRef50_B6RA51 Transcriptional regulator DarR n=1 Tax=Pseudovib... 52 3e-05 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 51 3e-05 UniRef50_B8KM84 Transcriptional regulator, AraC family n=1 Tax=g... 51 3e-05 UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=P... 51 3e-05 UniRef50_A7IJH1 Helix-turn-helix-domain containing protein AraC ... 51 3e-05 UniRef50_P0A2T2 Virulence regulon transcriptional activator virF... 51 3e-05 UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-typ... 51 4e-05 UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n... 51 4e-05 UniRef50_C9Y7W6 Putative uncharacterized protein n=1 Tax=Curviba... 51 4e-05 UniRef50_Q16DG7 Transcriptional regulator, AraC family, putative... 51 4e-05 UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS fa... 51 4e-05 UniRef50_Q0G2J4 Transcriptional regulator, AraC family protein n... 51 4e-05 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 51 4e-05 UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=m... 51 4e-05 UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillu... 51 4e-05 UniRef50_Q4KC58 Transcriptional regulator, AraC family n=14 Tax=... 51 4e-05 UniRef50_A6B243 Transcriptional activator of virulence loci n=4 ... 51 4e-05 UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type... 51 4e-05 UniRef50_B8HXD6 Transcriptional regulator, AraC family n=3 Tax=C... 51 4e-05 UniRef50_UPI0001B4CF35 putative AraC family regulatory protein n... 51 5e-05 UniRef50_A3K7B6 Putative uncharacterized protein n=2 Tax=Rhodoba... 51 5e-05 UniRef50_UPI00016A75A2 transcriptional regulator, AraC family pr... 51 5e-05 UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n... 51 5e-05 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 51 5e-05 UniRef50_A9GMV5 Transcriptional regulator, AraC family n=1 Tax=S... 51 5e-05 UniRef50_A6F8A8 Transcriptional regulator, AraC family n=1 Tax=M... 50 5e-05 UniRef50_Q5R005 AraC-type DNA-binding domain n=1 Tax=Idiomarina ... 50 5e-05 UniRef50_A0AX39 Transcriptional regulator, AraC family n=6 Tax=P... 50 6e-05 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 50 6e-05 UniRef50_D0LUM0 Transcriptional regulator, AraC family n=1 Tax=H... 50 6e-05 UniRef50_B4CYE8 Transcriptional regulator, AraC family n=3 Tax=V... 50 6e-05 UniRef50_Q0VTC8 Transcriptional regulator, AraC family n=1 Tax=A... 50 6e-05 UniRef50_D0WIH5 Transcriptional regulator, AraC family n=1 Tax=S... 50 6e-05 UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=... 50 6e-05 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 50 6e-05 UniRef50_A9D8L4 Transcriptional regulator, AraC family protein n... 50 6e-05 UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=A... 50 6e-05 UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=P... 50 6e-05 UniRef50_B8IE97 Transcriptional regulator, AraC family n=2 Tax=M... 50 7e-05 UniRef50_C4I1J5 Transcriptional regulator, AraC family n=60 Tax=... 50 7e-05 UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=B... 50 7e-05 UniRef50_Q1GKL0 Transcriptional regulator, AraC family n=2 Tax=R... 50 7e-05 UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=... 50 7e-05 UniRef50_A6GT10 Transcriptional regulator, AraC family protein n... 50 7e-05 UniRef50_Q7MJC9 AraC-type DNA-binding domain-containing protein ... 50 7e-05 UniRef50_A4W2Y8 AraC-type DNA-binding domain-containing protein ... 50 7e-05 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 50 7e-05 UniRef50_D2LZN1 Transcriptional regulator, AraC family n=1 Tax=B... 50 7e-05 UniRef50_C0EI59 Putative uncharacterized protein n=1 Tax=Clostri... 50 7e-05 UniRef50_B8ENG9 Transcriptional regulator, AraC family n=1 Tax=M... 50 7e-05 UniRef50_C8WKI5 Transcriptional regulator, AraC family n=1 Tax=E... 50 7e-05 UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory ... 50 8e-05 UniRef50_A3X3Q4 Transcriptional regulator, AraC family protein n... 50 8e-05 UniRef50_B7WZY1 Transcriptional regulator, AraC family n=1 Tax=C... 50 8e-05 UniRef50_Q5YRJ4 Putative transcriptional regulator n=2 Tax=Actin... 50 8e-05 UniRef50_A0P1V8 Transcriptional regulator, AraC family protein n... 50 9e-05 UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=C... 50 9e-05 UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 ... 50 9e-05 UniRef50_B7QRV0 Transcriptional regulator, AraC family n=1 Tax=R... 50 9e-05 UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=V... 50 9e-05 UniRef50_A9DB22 Transcriptional regulator, AraC family protein n... 50 1e-04 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 50 1e-04 UniRef50_A3UQ73 Helix-turn-helix, Fis-type protein n=3 Tax=Vibri... 50 1e-04 UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=M... 50 1e-04 UniRef50_A6NU64 Putative uncharacterized protein n=1 Tax=Bactero... 50 1e-04 UniRef50_B5JW86 Helix-turn-helix-domain containing protein, AraC... 50 1e-04 UniRef50_Q2BMD8 Transcriptional Regulator, AraC family protein n... 50 1e-04 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 50 1e-04 UniRef50_Q0VLG4 Transcriptional regulator, AraC family n=3 Tax=G... 50 1e-04 UniRef50_A4AS09 Putative two-component system sensor kinase/resp... 50 1e-04 UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=C... 49 1e-04 UniRef50_A6AXJ0 HTH-type transcriptional activator RhaS n=2 Tax=... 49 1e-04 UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Ta... 49 1e-04 UniRef50_C4L999 Transcriptional regulator, AraC family n=1 Tax=T... 49 1e-04 UniRef50_B6FT88 Putative uncharacterized protein n=1 Tax=Clostri... 49 1e-04 UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax... 49 1e-04 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 49 1e-04 >UniRef50_P77634 Uncharacterized HTH-type transcriptional regulator ybcM n=37 Tax=Enterobacteriaceae RepID=YBCM_ECOLI Length = 265 Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP Sbjct: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE Sbjct: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT Sbjct: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC Sbjct: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 Query: 241 PSRFTERFHNRFNITPREIRKASRE 265 PSRFTERFHNRFNITPREIRKASRE Sbjct: 241 PSRFTERFHNRFNITPREIRKASRE 265 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 122/257 (47%), Positives = 176/257 (68%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF 65 + L ++EI + H +H+VK LMPALCR+RQG+K+I W+ HT T D++Q+I+FP GYE Sbjct: 2 QAKLSMQEISSRQAHVLHKVKLLMPALCRVRQGRKIIEWQGHTETADHSQLIVFPAGYEL 61 Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 I N P YL+E++Y+P+ + + K Y + + ++ F + EL YCW+QLK + Sbjct: 62 QIANIPAGEGYLSEIIYIPLSITNFYLKHYPLPHKKKDVQRFCIKLTNELEYCWKQLKFA 121 Query: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 + +S+++ EH+ +G+LL L ++ L S ++ +RC +LL+ P +W+A VA Sbjct: 122 LDHDYSSQLLEHMLLGLLLILRETSAANIFLDSSDNTVTARCQDLLILSPSARWSARTVA 181 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 L++SVST HR LA+EG SFQ ILDDVRL NAL+AIQTT KPI EIAR+NGY+CPSRFT Sbjct: 182 EQLHMSVSTFHRHLAAEGGSFQQILDDVRLGNALNAIQTTSKPIGEIARDNGYQCPSRFT 241 Query: 246 ERFHNRFNITPREIRKA 262 RF R+ ITPR +R+A Sbjct: 242 SRFQKRYQITPRALRQA 258 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 189 bits (480), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 140/255 (54%), Gaps = 1/255 (0%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 +++I + H++ RV PALCR+RQG K I W + ++LFP G E + N Sbjct: 11 VQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMANQ 70 Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKT-SFFLPQNPELIYCWEQLKTSVSRG 129 AG Y AEMLYLP L+ F+K Y T S LP P L W+ + ++ Sbjct: 71 TGAGYYRAEMLYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLWDTMMDALRAP 130 Query: 130 FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLY 189 + + HLA +LL+L + LLL+ L + LLL +P W A +A+ L+ Sbjct: 131 LAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDIAQRLH 190 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 ++ STL RRL +EG F+ ILDDVRL AL A+Q+ PI +IA ++GY PSRFT RF Sbjct: 191 MAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYASPSRFTARFV 250 Query: 250 NRFNITPREIRKASR 264 R+ +TP +R+A R Sbjct: 251 RRYGLTPSALRQAMR 265 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 136/251 (54%), Gaps = 1/251 (0%) Query: 13 EIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 EI + H +H+V PALC +RQG K++ W + + +ILFP G E I N PE Sbjct: 15 EIVARRAHTLHQVTVFAPALCHVRQGSKLVQWGAQAASAGQSSLILFPAGAEVSIANTPE 74 Query: 73 AGLYLAEMLYLPIDLIESFQKLY-TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 G Y ++M+YLP L+ F+ Y + S +P + W+ L +V Sbjct: 75 RGHYCSDMVYLPQSLLRRFRHWYGALAVTPAPAPSLCVPLDIHTRLAWDSLLLNVKGHAP 134 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 + +H AMGVLL+L + +LL + + +LL +P W+ + VAR L+I Sbjct: 135 DALLQHAAMGVLLALYLAGQAGVLLIDRRDKWAEQVQQVLLLDPARNWSVSDVARSLHIG 194 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 STL R+L E SF+ IL++VR+ AL A+QTT I EIA ++GY PSRFT RF Sbjct: 195 DSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRFTSRFQQH 254 Query: 252 FNITPREIRKA 262 F +TPR +R+A Sbjct: 255 FGLTPRRLREA 265 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 138/252 (54%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L EI + +HRV+ PALCR+++G KVI + Q+I+ P E + Sbjct: 11 LTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVI 70 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N PE GL+ +++L L +L+ F+ Y TS P EL + W+ + +V Sbjct: 71 NQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVRE 130 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 G S +Q+H MG+LL+L LL +Q L ++ L++ P W+ ++VA+ L Sbjct: 131 GLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKML 190 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 ++ STL RRL E SF+ I+++VR+ +AL +QTT +PI EIA+ +GY+ SRFT RF Sbjct: 191 FLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARF 250 Query: 249 HNRFNITPREIR 260 + + P+ +R Sbjct: 251 RQHYGLLPKHVR 262 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/256 (33%), Positives = 130/256 (50%), Gaps = 1/256 (0%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 + ++ EIR + RV MPALCR+R G K I ++ +Q++L P G E Sbjct: 9 SRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPAGCELD 68 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP-QNPELIYCWEQLKTS 125 I N P G YLA+++ LP DL++ F+ + + P + L W L S Sbjct: 69 IVNLPGPGGYLADVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWTLLMDS 128 Query: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 + + +I++H A GVLL+L + LL SL L++ +P W+ A Sbjct: 129 LHGNAAPEIRQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWSVETAA 188 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 R L + STL RRLA E FQ+IL++VR+ AL +Q + I++IA +GY SRF Sbjct: 189 RRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYASASRFA 248 Query: 246 ERFHNRFNITPREIRK 261 RF R+ +TP +R+ Sbjct: 249 ARFRQRYGLTPSALRR 264 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 30 PALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA--GLYLAEMLYLPIDL 87 P L I+ G+K + W LT+ +++L G F + N P+A G Y A + L + Sbjct: 34 PTLLYIQVGQKTLRWRGQELTIQAGEMVLLAAGQTFDVLNNPDAKLGFYQAGWIALEQRV 93 Query: 88 IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLS-L 146 ++ F L+ V ++ + + P P L ++ ++ ++ + ++ L + LL+ L Sbjct: 94 VDEFADLFGVETYVQ-ELAKIQPLAP-LKAHFDVVRQALENDEAPELVLKLKLFELLAWL 151 Query: 147 GVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSF 206 H++ + + K +L+ + ++ S +WTA +AR L++S ++L R L +F Sbjct: 152 KAEHLS--FVPHEKHNLLRQIRKMIASNTAFEWTAETIARQLHLSETSLRRALQKSDTTF 209 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + +L DVR++ AL+ +Q T ++ IA E GY PSRFT RF RF P +IR+ Sbjct: 210 REVLTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVRFKQRFGFLPSDIRE 264 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 13/243 (5%) Query: 18 KHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYL 77 + +HRV P + + QG K + W+ L D +L P G++ N PE G + Sbjct: 15 RQQPLHRVLIYAPTIIWVEQGHKQLWWQEKRLAFDQASWLLIPAGHQLTFVNQPEQGKFR 74 Query: 78 AEMLYL----PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 + L L P++ + + Q +R L +P L +C+E + + R + Sbjct: 75 SRALTLLTPPPVEWLGATQ-----AGPLREPR---LTVSPALAFCFELVCSMADRRLNEA 126 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 Q L G L LL +L R L EPG T VA + +S + Sbjct: 127 TQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHFAMSRA 186 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 ++ R+LA+EG SF+ +L VR+++AL+ +Q + P+ E A GY PSRF RF F Sbjct: 187 SMARKLAAEGRSFRQLLTQVRMSHALTLLQQGLVPL-ETALACGYDSPSRFAARFKQEFG 245 Query: 254 ITP 256 +TP Sbjct: 246 LTP 248 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 30 PALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIE 89 P++ R+ G+K + W+ ++ V Q++L P G N P G Y A L LP DL Sbjct: 23 PSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISFVNRPFLGRYRAVQLLLPHDLP- 81 Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPE--LIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLG 147 Q + + T R+ QN + W L S+S + +Q H +LLSL Sbjct: 82 --QGILSSTADWRDPMPV---QNVSRAVDLAWNALLQSLSLSLADSVQLHYLAALLLSLP 136 Query: 148 VNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 L ++++S+ L+ P W ++A L++S ++L R+LA E SF+ Sbjct: 137 DKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMSTASLRRKLALEDTSFR 196 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +L +VRL++ L+ +Q + +P+ ++A GY+ +F+ RF +F +TP R+ Sbjct: 197 QLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQFGLTPAAYRR 250 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 121/258 (46%), Gaps = 9/258 (3%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L+ + HK + + P + R+ G+K + + LT Q +L G F + Sbjct: 13 LETGSVLQHKKLSFAQSQFAQPMIVRVLHGRKTLRYAGGELTATTGQWLLIAGGQSFDVL 72 Query: 69 NYPEAGL-YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P+A Y +E L L + + F Q ++ + L + W++ V Sbjct: 73 NEPDAAQGYRSEWLMLGDEWVAQF------FAQHPSRETLDLARVLRPDAAWDEAFLRVV 126 Query: 128 RGFSTKIQEHLAMGVLLSL--GVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 +G T++ E + + L + + +S Q L + L+ + W VA Sbjct: 127 QGVQTRLPETVLAARTMELLAWLAQAGAVFNPHSAQRLSKQIRQLIAQDMAASWQIADVA 186 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 + L +S +TL RRLA+EG SF+ +L ++++ AL+ +QT+ ++++A GY+ P+RF Sbjct: 187 QRLGMSEATLRRRLANEGASFRELLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFA 246 Query: 246 ERFHNRFNITPREIRKAS 263 +F F TP ++RKA+ Sbjct: 247 AKFRAHFGCTPSDVRKAA 264 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/257 (30%), Positives = 116/257 (45%), Gaps = 19/257 (7%) Query: 15 RMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG 74 R + +H V + P L + +G KV++ + L + + IL P G E N PE G Sbjct: 25 RCLQPQNLHGVPFIDPCLIIVLRGAKVLSLQPE-LACRSGEFILAPAGIELQFMNLPE-G 82 Query: 75 LYLAEMLYLPIDLIESF------QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 Y+A ++ +E+ + ++ + FL Q W + Sbjct: 83 EYIAVVIGFCASDLEAIPVSAPPDRDGAAIARVDRTLAEFLNQ----WINWIDVSPPELW 138 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 K HL L LL S S S + +L+ EP W+ +++R L Sbjct: 139 ALRRKELAHL-------LYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLL 191 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S STL RRL SE F+ +L+ VRL L QTT+ PI+ IA + GY+ SRFTERF Sbjct: 192 AVSESTLRRRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERF 251 Query: 249 HNRFNITPREIRKASRE 265 RF +TP E+R+ E Sbjct: 252 KQRFGMTPSELRQTRLE 268 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/262 (27%), Positives = 121/262 (46%), Gaps = 23/262 (8%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 IR +R+ P L +++ G K+I L ++ L P +EN P+A Sbjct: 14 IRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLPDYQPLTMENIPKA 73 Query: 74 GL-YLAEMLYLPIDLIE-SFQKLYTVTDQIRN--KTSFFLPQNPELI--YCWE-----QL 122 Y L +P L E ++ ++ ++ R ++ LP+ ++ YC + +L Sbjct: 74 PRNYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARL 133 Query: 123 KTSVSRGFSTKIQEHLAM-GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 ++++ ++ A+ G +L G L R ++ S+P WT Sbjct: 134 PGAIAKARLMELVTWFALCGAVLGEG-----------QSPRLEDRLRQMIESDPAFDWTL 182 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 AR +S +TL RRLA+E F IL D R+N AL I TT P++++A E GY P Sbjct: 183 AHAARSFNMSEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYDSP 242 Query: 242 SRFTERFHNRFNITPREIRKAS 263 S+F+ RF RF ++PR +R S Sbjct: 243 SQFSARFKERFGVSPRHVRSGS 264 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 20/246 (8%) Query: 30 PALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIEN-YPEAGLYLAEMLYLPIDLI 88 P L + +G K+I WE + +I + G I N L+ ++ L+ LI Sbjct: 33 PLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIINGLSNDDLFFSQQLHCDPSLI 92 Query: 89 ESFQKLYTVTD--------QIRNKTSFFLPQNPELIYCWEQLKTSVSRG--FSTKIQEHL 138 +F T D IRN PE I + + S+S T I +H Sbjct: 93 AAFAHHPTSADLGVIPGVMAIRNLA-------PEFINTFGNIFNSISENSDIPTVIIKHR 145 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRR 198 + +LL L V +L L + L S+P W+A++VA ++ +S L R+ Sbjct: 146 MLELLLWLAQRDVKFIL--NDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVLRRK 203 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 LA+E + + ++ DVR+ +AL +Q T PIS IA + GY+ SRF ERF RF P Sbjct: 204 LAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFAERFRKRFGFAPTA 263 Query: 259 IRKASR 264 IR R Sbjct: 264 IRGHHR 269 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 12/239 (5%) Query: 22 IHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEML 81 +H V P + + G K + W TL + ++ P N P+ + + L Sbjct: 19 LHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFVNVPQQAQFYSRTL 78 Query: 82 YL----PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 L P++ I + Y +Q R + + EL YC+E L + S + Q Sbjct: 79 TLHEAPPVEWITQSSQ-YERNEQPRVRVT------AELAYCFELLYEMNQQSLSEETQRQ 131 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 +G L HLL S+ R L PG + V+ + +S +TL R Sbjct: 132 FVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSAHFAMSRATLAR 191 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 LA+EG F+ +L +VR+N AL+ +Q ++P+ E+A GY+ +RF+ RF ++ +TP Sbjct: 192 HLAAEGTGFREVLSEVRMNYALALLQ-ELRPLMEVAVACGYQSLTRFSARFKQQYRLTP 249 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 93.2 bits (230), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 11/257 (4%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 I + + + + V L+P++ + QG+K W + +L P N Sbjct: 8 ITQYQGQQAQNLRNVPILLPSIVAVEQGEKQFQWHGRWIRFHKKNWLLIPAHSRITFVNN 67 Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELI------YCWEQLKT 124 P + + + LI ++ ++ Q + S L +PE I Y W QL Sbjct: 68 PHQTQFRSTQISF---LIPPTAEMIQLSQQNADTVSNHL-DSPEFIVDDEGRYLW-QLLL 122 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 S+ + S IQ+ L G+ L HLL + + S + +P +T +V Sbjct: 123 SMPKELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTIEQV 182 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 + +S +TL RRL E F+ +L VR+ +ALS +Q + + E+A++ GY+ RF Sbjct: 183 CQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSEVRF 242 Query: 245 TERFHNRFNITPREIRK 261 T+RF +F ++P++ +K Sbjct: 243 TQRFQKQFGLSPKQYQK 259 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 74/253 (29%), Positives = 108/253 (42%), Gaps = 13/253 (5%) Query: 15 RMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG 74 R + ++ V L + G K + V + +L P + IEN P G Sbjct: 17 RARRPQQLRAVPVAQTTLITVESGIKRVVCGGQGWQVQAGEWLLLPALAQVQIENRPGNG 76 Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS---FFLPQNPELIYCWEQLKTSVSRGFS 131 YLA L P+D E L +TD++ LP + + W+ R Sbjct: 77 GYLARCL--PLD-DEWLAALPALTDRLPASGGPAICCLPPDACIQEAWQHWCAGQQRQRP 133 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT--ANKVARYLY 189 +Q + +LL++ L L R LL GT T A +++R L Sbjct: 134 GPVQRQRMLELLLAI-CLAGGGRGLLRGAAELAPRVNRLL----GTDLTLGAAELSRRLA 188 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S STL R LA EG S + + + RL AL+ +QT+ PI ++A GY SRF+ RF Sbjct: 189 MSESTLRRHLADEGHSLRELREHCRLERALALVQTSSLPIGQVAEACGYASASRFSARFR 248 Query: 250 NRFNITPREIRKA 262 RF TPR +R A Sbjct: 249 TRFGCTPRSLRAA 261 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 59/244 (24%), Positives = 114/244 (46%), Gaps = 11/244 (4%) Query: 25 VKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLP 84 V L P++ +I G K + W+ TL +D + ++L + + EN P+AG + + Sbjct: 25 VAILTPSIIQITTGSKRLYWQETTLDIDAHSLLLCRANHALHFENLPQAGQFSSRQFCFS 84 Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS-------RGFSTKIQEH 137 + ++ +++++ T +P ++ C + L +++ ST+ Sbjct: 85 LPPTS---EMLSLSERNGTTTPHLTLHHP-VVRCDKALNHTLNLLAGLPLDELSTETLTF 140 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 G L V HL+ + QS + + +P ++ IS +TL R Sbjct: 141 WLYGFYQQLAERGVLHLMFTPQGQSFEQKLSEFIAQQPSKDHQIEDACQHFAISKATLIR 200 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL EG ++ +L VRL++AL+ +Q + +E++ GY+ P +F++RF RF ++PR Sbjct: 201 RLKEEGTQYREVLSKVRLSHALNLMQQGHRKTAELSLMCGYQSPDKFSQRFRQRFGLSPR 260 Query: 258 EIRK 261 E K Sbjct: 261 EYCK 264 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 2/250 (0%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 K+ ++ + + V L P+L +IR G+K + W+ L D + ++L G + E Sbjct: 5 FKVSQMYGLQTQRLRNVAILTPSLFKIRSGRKRLFWQDDVLEFDASTLLLTKAGQQLTFE 64 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N P +L+ + + E ++ +N+ S N ++ + L ++ Sbjct: 65 NEPSKERFLSVQMSFLLPPAEGMIQMSIKV--AKNECSPRFKPNRSVMASLDFLLELDTQ 122 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 S Q + G L HLL S + LL P + ++VA + Sbjct: 123 SVSETAQAYWLNGFYQQLAEVGKLHLLFEGHSVSFEQKITELLQQAPWQDYQLDQVATHF 182 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S +TL RRL E F+++L VR+N ALS +Q + +IA GY+ RF++RF Sbjct: 183 SMSRATLIRRLKEENTQFRTLLTRVRMNYALSLMQQGYRQQMDIAVRCGYQSQERFSQRF 242 Query: 249 HNRFNITPRE 258 + F ITP + Sbjct: 243 YKSFGITPSQ 252 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/101 (49%), Positives = 62/101 (61%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 +SL R L+ T+ TA +A L++S STL R+L SEG S Q I + VRL + L Sbjct: 165 KSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLH 224 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 IQTT I IA E GY+ SRFTE+F N F ITPRE+RK Sbjct: 225 LIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRELRK 265 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 50/101 (49%), Positives = 62/101 (61%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 +SL R L+ T+ TA +A L++S STL R+L SEG S Q I + VRL + L Sbjct: 89 KSLSERVQTLISYHLSTELTAEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLH 148 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 IQTT I IA E GY+ SRFTE+F N F ITPRE+RK Sbjct: 149 LIQTTNNSIGNIAFECGYQSQSRFTEQFKNLFGITPRELRK 189 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 61/101 (60%) Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 +Q ++ R +LL + P T WTA L +S STL RRL EG SF+ +L D+R+++ L Sbjct: 194 RQGVLPRLSHLLRASPETDWTARSAGEALAMSESTLRRRLREEGGSFEKLLVDIRMHHGL 253 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 IQTT ++++A GYK SRF ERF RF + P +R Sbjct: 254 MLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPPSRLR 294 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 2/119 (1%) Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 +LL L ++ LL +Q + R LL P WTA L +S STL RRL Sbjct: 169 LLLVLAEQNIRFLL--PQQQGIFPRLSKLLREAPDKGWTAKVAGDALAMSESTLRRRLRQ 226 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 EGV F+ +L D+R+++AL IQTT ++++A GYK SRFTERF RF +P ++R Sbjct: 227 EGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADACGYKSVSRFTERFRYRFGNSPAQLR 285 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 59/93 (63%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 L+ +EP KW++ +A L +S +TL R+LA EG +F IL DVR++ ALS +Q+T I Sbjct: 178 LIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAFSEILVDVRMSLALSLLQSTDAAI 237 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + IA + GY+ SRF+ RF RF +P IR Sbjct: 238 ASIAYQVGYESASRFSVRFKQRFGFSPTAIRNG 270 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 114/254 (44%), Gaps = 20/254 (7%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 R + ++ V+ P++ +I +G K + W+ + + I+L EN P+ Sbjct: 10 FRAEQQQKLRNVRIHSPSIIQIIKGSKRLFWKDEAFDILHPNIMLCEANASLNFENLPQQ 69 Query: 74 GLYLAEMLY---LPID-LIESFQKLYTVTDQIRN-----KTSFFLPQNPELIYCWEQLKT 124 G +L+ M +P D ++E ++++ + N +T L ++ +E+ Sbjct: 70 GRFLSRMFSFHCVPSDEMLE-----LSMSNALGNYVPAVETDKALQATLNALFSFER--- 121 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 S Q + MG+ L + H L + S S + L PG V Sbjct: 122 ---ESLSEATQRYWMMGLYQQLAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFV 178 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 A +S +TL R+L EG ++ +L +VRLN+AL +Q ++ +A+ GY+ RF Sbjct: 179 AERFAMSRATLIRKLKQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRF 238 Query: 245 TERFHNRFNITPRE 258 ++RF +F +TP E Sbjct: 239 SQRFKGKFGLTPSE 252 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 25 VKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLP 84 VKP++ A + G K ++ E LT Q + + N P Y A ++ Sbjct: 37 VKPMLIA---VLSGDKQLDGEQQ-LTCSAGQFVFLSNSPTTSMRNIPIGSQYCALLIEFE 92 Query: 85 IDLIESF-----QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLA 139 I E Q +I ++ S L Q E W + K HL Sbjct: 93 ISDFEGIKLNQTQSYGLCFGEICSRLSACLAQFVE----WAHIAPPAMWAMRRKEIVHL- 147 Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL 199 L LG +++ L+ S+S L ++ + ++ ++ T + + +S STL R+L Sbjct: 148 ---LFQLGHSNIAGLVHSHS---LSNQIHLVIANDQELDVTIESLCQRFAMSESTLRRKL 201 Query: 200 ASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 +EG++ Q I D VRL L +Q+T K I IA GY+ SRF+ERF RF +TP ++ Sbjct: 202 KAEGITLQDIKDQVRLGQGLHLLQSTRKSIGMIANVCGYQSQSRFSERFKYRFGLTPSQL 261 Query: 260 RK 261 RK Sbjct: 262 RK 263 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 80/147 (54%) Query: 115 LIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE 174 L Y + L S+ S+ +Q+H L H+L S S SL ++ + Sbjct: 111 LAYGFSLLIEMSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFSKD 170 Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P + ++V+ +S +TL RRL +G +F+++L +VR+++ALS +Q + ++A Sbjct: 171 PAENYQLDEVSHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLAL 230 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRK 261 + GY+ +RF++RFH +F ITP++ K Sbjct: 231 QCGYQSETRFSQRFHQQFGITPKQYMK 257 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 61/100 (61%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 SL ++ + ++ ++ WT + + + L +S ST+ R+L +EG S Q++ D RL+ L Sbjct: 166 SLSAKVHAIISTDLTYDWTMDVITQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQ 225 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +Q+T +PI+ IA + GY SRFT +F F +TP +RK Sbjct: 226 VQSTFQPINHIAEQCGYLSQSRFTNKFKQLFGVTPTALRK 265 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 21/220 (9%) Query: 53 NNQIILFPCGYEFYIENYPEA-GLYLAEMLYLPIDLIESFQK---LYTVTDQIRNKTSFF 108 + ++ + P G ++ + N P G Y+A+++ L + I F + + + +R+ Sbjct: 71 SGELFILPRGTQWDVVNDPAPQGRYVAQVINLQPETITRFYQSFGQFAALEPVRSAAR-- 128 Query: 109 LPQNPELIYCWEQLKTSVSRGF--------STKIQEHLAMGVLLSLGVNHVNHLLLSYSK 160 + + P I KT+ R ST + EH + VLL L H +L Sbjct: 129 VAETPASI------KTAFLRAADALSDANCSTTLSEHRVLEVLLLL-AEHAGVVLAPPGA 181 Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 + R L+ P W+A++VA+ L + STL+RRLA EG + + + D RL A+ Sbjct: 182 LNWSERVRRLVAQRPYDHWSASRVAQALSTTASTLNRRLAQEGCTITTCVRDTRLETAMV 241 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +Q++ +P++ IA + GY+ S+FT F RF + P +R Sbjct: 242 LLQSSERPVAAIALDVGYESHSKFTAAFRRRFGVVPSALR 281 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 16/237 (6%) Query: 32 LCRIRQG-KKVINWETHTLTVDNNQIILFPCGYEFYIENYP-------EAGLYLAEMLYL 83 L I +G KKVI L + +FP G +EN P G+ +A L Sbjct: 31 LSFIHKGTKKVICPHNGELIGSEGDLFIFPPGSIISLENRPLVDADYQADGVSIANTLID 90 Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVL 143 + + T +R K PE + + +T + +++H + L Sbjct: 91 AVYAGQPAAPAATGIQVVRGKE-----HKPEDVLALMK-ETLANTSLPEALRQHRLLEPL 144 Query: 144 LSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 + L H+ L + +S+ +L+ ++ W A VA + +S +T R LA G Sbjct: 145 IWL--RHIGVNLSKPDTDNPLSKVRSLIETDLSYAWRATDVASHFAMSEATFRRWLAKSG 202 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 F +L RL L+ +Q+T +PIS IA + G+ PS F+E F RF I P+EIR Sbjct: 203 HGFAKVLLHTRLEKGLTLLQSTHEPISNIALDCGFNTPSHFSEAFKKRFGIRPKEIR 259 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 8/129 (6%) Query: 142 VLLSL---GVNHVNHLLLSYS--KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 +LL+L G++ N +Y K+ I+R L+ +P KW+ + +A+ L+ + STL Sbjct: 175 ILLALNEAGIDVFNVYRFNYDEPKERTIAR---LITQDPQRKWSVDDMAKALFTTQSTLR 231 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R LA EGVSF +L DVR+ AL+ + + IS+I +G+ + F + F ++ ITP Sbjct: 232 RHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQIGHRSGFGSAAYFCDAFKRKYGITP 291 Query: 257 REIRKASRE 265 + R SRE Sbjct: 292 SQFRATSRE 300 >UniRef50_B9JBF3 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JBF3_AGRRK Length = 270 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 11/215 (5%) Query: 39 KKVINWETHTLTVDNNQIILFPCGYEFYIENYP--EAGLYLAEMLYLPIDLIESFQKLYT 96 K+V++ H L + +++ P G+ + N P ++G+Y A + P +L+ ++ Sbjct: 63 KEVLSMGRH-LRLPAGTVLVLPAGWRGDVVNDPNPQSGVYRAIFISFPDELV---RRAIG 118 Query: 97 VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-FSTKIQEHLAMGVLLSLGVNHVNHLL 155 R + LP +P L ++ G ++ EH M VL+ LG+ Sbjct: 119 AFPPARTASQIDLPLDPVLAAAIHHAGDGIASGELPAELIEHRLMEVLMVLGMRGA---- 174 Query: 156 LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 L S ++ L+ +P WTA+ +A L S +TL RRL+ EG S + +L R+ Sbjct: 175 LPASPETTAEAVRALVRWQPDRAWTADLIAVELGTSNATLRRRLSREGSSLRDVLASERV 234 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 A + + + E A GY+ P RF ER + Sbjct: 235 ALATTLLAEDGLSLREAALATGYRSPRRFAERLRS 269 >UniRef50_Q8Z4A6 Transcriptional regulator sirC n=36 Tax=Salmonella enterica RepID=SIRC_SALTI Length = 295 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 55/91 (60%) Query: 166 RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTT 225 + YN+++S+ KW+ +VA L++SVS+L R+LA+E VSF I D R+N A+ ++ Sbjct: 196 KVYNIIISDLTRKWSQAEVAGKLFMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMG 255 Query: 226 VKPISEIARENGYKCPSRFTERFHNRFNITP 256 IS++A GY PS F F F ITP Sbjct: 256 AGNISQVATMCGYDTPSYFIAIFKRHFKITP 286 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 74/129 (57%), Gaps = 8/129 (6%) Query: 142 VLLSL---GVNHVNHLLLSYS--KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 +L++L G++ N +Y K+ I+R L+ +P KW+ + +A+ L+ + STL Sbjct: 145 ILMALNEAGIDVFNVYRFNYDEPKERTIAR---LITQDPQRKWSVDDMAKALFTTQSTLR 201 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R LA EGVSF +L DVR+ AL+ + + IS+I+ +G+ + F + F ++ ITP Sbjct: 202 RHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKYGITP 261 Query: 257 REIRKASRE 265 + R SR+ Sbjct: 262 SQFRTTSRQ 270 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 54/91 (59%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 L+ EP WTA R L +S +TL RRL++E F+ +L + R+ +A+ +QTT + Sbjct: 198 LISEEPERHWTAQSAGRLLAMSEATLRRRLSAEQTRFEVLLLETRMQHAMMLVQTTSWSM 257 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIR 260 +A GYK +RF+ERF RF +P +IR Sbjct: 258 QRLAEACGYKSSARFSERFKTRFGCSPTKIR 288 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 26/204 (12%) Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS--FFLPQNPELIYCWEQLKTSV--- 126 E G +++ P +L F+K + + +R+KT F P + + QLK ++ Sbjct: 69 EKGFKALALVFNP-NLFCDFKKAHPM---LRSKTEERRFYPFSAQASSEVAQLKDTLVNL 124 Query: 127 -SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV- 184 SR Q H+AM LLSL V ++L S+I +L S+ K+ N + Sbjct: 125 ASRNAPDYTQGHIAMA-LLSLMVEVEPNIL------SIIDDASSLSDSQKAIKYIENNIE 177 Query: 185 --------ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 A ++ +S++TL RRLA+E +SF IL R+N A + ++ + K I+EIA E+ Sbjct: 178 KDITLEGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFAATQLRMSEKSITEIAFES 237 Query: 237 GYKCPSRFTERFHNRFNITPREIR 260 G+K + F+ F + +N+TP++ R Sbjct: 238 GFKSAAHFSTAFKSVYNMTPKDFR 261 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/250 (23%), Positives = 111/250 (44%), Gaps = 9/250 (3%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 I + H V+ P + +G+K + +L I+L + N P+ Sbjct: 30 ITARREHGASSVEIPQPQFAILLEGRKQVRTAHQSLEFVPGDILLLTQRCRIDVVNTPDP 89 Query: 74 GL--YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP--QNPELIYCWEQLKTSVSRG 129 G YL+ ++ L +++ + + L++ LP ++ ++ W Q S+ G Sbjct: 90 GTGRYLSAIVPLCAEVLAAARTLWSEALPSAGPVMGRLPLTEHGAVLRQWRQ---SLQDG 146 Query: 130 FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLY 189 + + LA VL H N LL SL + + + +EP W + V Sbjct: 147 RYSDARLALASLVLTLCRQGHGNLLL--PQAPSLGEQIRDRIAAEPARDWQSRDVEEQFA 204 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S +TL RRLA+E S + +L + RL + ++ + TT P+ +A GY+ + F++RF Sbjct: 205 LSGATLRRRLAAERTSLRQLLTEARLAHGMTLLYTTDLPLKTVAARAGYRSAASFSKRFA 264 Query: 250 NRFNITPREI 259 ++ + P +I Sbjct: 265 EQYGLAPTDI 274 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 20/233 (8%) Query: 49 LTVDNNQIILFPCG--YEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS 106 L QI+L P G E E PE G Y + + L ++ E Q+ Y R Sbjct: 84 LVAREGQILLVPQGIPLELVNEPDPERGAYRSFTIELLSEVDERLQRRYPTLCVQRGLGG 143 Query: 107 F----------FLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL 156 F +P LI+ + T + G + EH ++L+L + H L Sbjct: 144 FEADRPHLLRSAMPSIQALIHL---VNTLLLPGAHALLIEHRLEDLILTLLLQHREQLDE 200 Query: 157 SYSKQSLIS-----RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 + + S ++ L+ +P W A +VAR L +S +TL RRL ++GVSF+++L Sbjct: 201 ARAASSTLALDPTLAVRALVRRDPARPWAAPEVARALGVSDATLRRRLGAKGVSFRALLW 260 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 RL+ A +++ + E+A GY SRF E+F ++P E R R Sbjct: 261 KERLDLAKGLLRSGRHGVLEVATACGYDSASRFAEQFRRSEGVSPSEYRARHR 313 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 8/237 (3%) Query: 31 ALCRIRQGKKVINWET-HTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIE 89 L + QG + ++ T + + L+ G + P + A L I L++ Sbjct: 31 GLFFVEQGSLTVTQDSGATSELTAGEFALYNSGQLKEAQAQPGENGFSALALVFSITLLQ 90 Query: 90 SFQKLYTVTDQIRNKTSFFLP---QNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSL 146 F+ +Y ++ +T F Q+ + + L V R +++ QEHLA+ L++L Sbjct: 91 KFRNVYPLSKIPAQQTDTFFKFSGQHKRIDQLKDMLIEEVERKQNSQAQEHLALA-LMAL 149 Query: 147 GVNHVNHLL---LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 V LL + ++ S + + S + + +A+++ +S +TL RRLA+E Sbjct: 150 MVEKQPELLNMIIRATQFSETQKIIQFIESNIEEEISLETLAKHMGMSTATLKRRLAAEE 209 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +SF +L R+++A + ++ T K I+ IA E+G+K + F+ F +TP+E R Sbjct: 210 MSFSQLLKIKRISHAATQLRVTDKSITTIAYESGFKSAAHFSTAFKAVQQMTPKEFR 266 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 58/104 (55%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 +K S+ + YNLL +EP +W + V+ +++S STL R+LA+EG +F + R+N A Sbjct: 192 AKLSVKYKVYNLLYTEPDKQWKLDDVSSAIFMSASTLKRKLATEGTTFSELYITARMNLA 251 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 ++T ++ +A GY S F F +FNITP K+ Sbjct: 252 SKLLRTGKYSVTNVAVLCGYDSVSYFIACFKRQFNITPSAFMKS 295 >UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=2 Tax=Photobacterium RepID=Q1ZVK9_PHOAS Length = 259 Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 113/243 (46%), Gaps = 13/243 (5%) Query: 25 VKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYE--FYIENYPEAGLYLAEMLY 82 V + P++ I+QG K ++W+ + ++N +L G++ +I N + + ++ + Sbjct: 21 VPIIYPSIFWIQQGNKQLHWQNEWIPFNSNNWLL-AHGHKSLTFINNPNQTQFFSTQLSF 79 Query: 83 LPIDLIESFQKLYTVT-DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 L E Q+ + D + + S + Y W+ + T + + +Q+H+ Sbjct: 80 LIRPTDEQIQRSQDIQKDGLTPEYSL----DGTAKYLWQSIIT-MPKDIKPNVQKHIVNA 134 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 + L + H L S S + +P + V + +S STL RRL Sbjct: 135 LFEHLANSGYLHQLFSMRNLSWRDKLTQYFNDDPKANHSIESVCDHFGLSKSTLIRRLKD 194 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPIS--EIARENGYKCPSRFTERFHNRFNITPREI 259 E F+ +L ++R+ ALS +QT KP S E+A GYK +RF +RF ++F ++ ++ Sbjct: 195 ENTQFRDVLAELRMGYALSLLQT--KPYSQIELAHLCGYKSEARFAQRFQHQFGLSLKQY 252 Query: 260 RKA 262 +K Sbjct: 253 QKT 255 >UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=Dickeya dadantii Ech703 RepID=C6CBK7_DICDC Length = 279 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 11/228 (4%) Query: 39 KKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA-GLYLAEMLYLPIDLIESFQKLYTV 97 K+++ E + V ++ + P G ++ + N P G Y+A +L L ++ F + ++ Sbjct: 56 KQLVTPEGGNVFVPG-ELFVLPRGTQWDVINDPAPQGNYVARILTLQPEIAARFYQRFSQ 114 Query: 98 TDQIRNKTSF--FLPQNP---ELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVN 152 + SF + +N + L+T+ G S ++EH + VLL L Sbjct: 115 FALLGPVRSFARVVGRNGIQEAFLRAVAALETA---GSSAALREHRVLEVLLLL-AEQAG 170 Query: 153 HLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDD 212 +L S S + L+ P W+A VA L +SVSTL+RRLA EGV+ + + D Sbjct: 171 VVLAPPSALSWTEKVQRLVAQRPHADWSAAGVAAALAVSVSTLNRRLAQEGVTIAACVRD 230 Query: 213 VRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +RL+ AL+ +Q++ +P++ IA++ GY S+FT F RF + P +R Sbjct: 231 IRLDAALTLLQSSDRPVAVIAQDVGYVSHSKFTAAFRRRFGVVPSALR 278 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 56/103 (54%) Query: 154 LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 ++LS ++ +L R YN++ S P +W VA ++++S STL R+LA EG SF I Sbjct: 198 IILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSA 257 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R+N A ++ ++ +A + GY S F + F F TP Sbjct: 258 RMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTP 300 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 56/96 (58%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 L+ EP KW + VA+ L+ + STL R L EGVSF+ +L DVR+ AL+ + + + Sbjct: 176 LITQEPQKKWHLDDVAKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSV 235 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +I+ G+ + F + F ++N+TP + R SR+ Sbjct: 236 FQISHRCGFGSNAYFCDVFKRKYNMTPSQFRLQSRQ 271 >UniRef50_Q471G1 Transcriptional regulator, AraC family n=6 Tax=Burkholderiales RepID=Q471G1_RALEJ Length = 358 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 56/95 (58%) Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 +LL PG + + +VA L + T+ RRLA +G SF S+++D+R+ A+ + + +P Sbjct: 238 TILLLLPGGRCSVEQVAENLGVVCRTVQRRLAEQGQSFSSVVNDIRVELAMRHVVESDRP 297 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +E+A G+ PS F+ + +F +P+E R AS Sbjct: 298 FTEVATLLGFSAPSGFSRWYQTQFGCSPKESRAAS 332 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 1/105 (0%) Query: 156 LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 L Y+ +S++ R NLL+ + + VAR L++S TL R+LA G ++ ++LD++RL Sbjct: 144 LGYA-ESIVERVRNLLICGDAGYPSVDDVARELHVSARTLKRKLAEFGATYSTLLDEIRL 202 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +AL ++ T P+ EIA GY + FT F + P E R Sbjct: 203 RDALRLLEGTRLPVDEIAARVGYTDRANFTRAFKRWTGVAPSERR 247 >UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNS6_9GAMM Length = 248 Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNL-LLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 L +L N +L+S Q+ + R L LL + + A +AR L +S +L+RRL Sbjct: 126 LATLCSNFCESVLVSGEGQTRLQREIRLILLGKIRQQPVALDIARELGLSKRSLYRRLQE 185 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 E +FQ +LDDVR + A+ + +T P+ E+A G+ PS F + F +TPR R Sbjct: 186 ENATFQGLLDDVRASVAIQFLSSTSLPVEEVAHRVGFADPSNFRKAFRRWTGVTPRSYRS 245 Query: 262 AS 263 A Sbjct: 246 AG 247 >UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 Tax=Vibrio RepID=C9NYZ8_9VIBR Length = 261 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 65/259 (25%), Positives = 118/259 (45%), Gaps = 12/259 (4%) Query: 8 NLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYI 67 +I E R + V P++ +I G K + W+ ++T+ + +IL + Sbjct: 4 QFQITEFRAQHLQALRNVTIHSPSIIQILSGNKRLFWQEESVTLTPDSLILCSAASSWNF 63 Query: 68 ENYPEAGLYLAEML---YLPIDLIESFQKLYTVTDQIRNKTS--FFLPQNPELIYCWEQL 122 N P+ G +L+ + YLP Q++ +++ + +S + L P + L Sbjct: 64 ANLPQKGPFLSRVFSFNYLPS------QEMLGLSENAAHSSSPSYCLVDKP-IRDTLNTL 116 Query: 123 KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTAN 182 T + S + Q++ M + L H + S S+ SL L P + + Sbjct: 117 ATVNLKAISPRTQQYWLMPLYQQLAEQGALHKIFSSSQASLTQTITQYLSIAPADEHSLE 176 Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 VA + +S +TL R+L EG ++ +L VRL++AL +Q ++A+ GY+ Sbjct: 177 GVADHFGMSRATLIRKLKQEGSQYRQLLAQVRLSHALQLMQKHQYDGYQLAQMCGYQSEE 236 Query: 243 RFTERFHNRFNITPREIRK 261 RF +RF RF +TPRE ++ Sbjct: 237 RFRQRFRERFGVTPREYQR 255 >UniRef50_C4ZIP3 Transcriptional regulator, AraC family n=1 Tax=Thauera sp. MZ1T RepID=C4ZIP3_THASP Length = 358 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 56/108 (51%) Query: 156 LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 +S S++ R +LL + G+ + VAR L+IS TL RRL +EG FQ++ D +R Sbjct: 248 VSVSERLFTHRVRDLLEAGLGSPQSVEDVARMLHISARTLARRLDAEGTHFQAVKDALRR 307 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + A++ I T +PI I + G+ P+ F F P R+A Sbjct: 308 DVAIARISRTDEPIGSIGADLGFDDPAAFNRAFKQWTGSPPGSYRRAG 355 >UniRef50_B0TKQ1 Transcriptional regulator, AraC family n=5 Tax=Gammaproteobacteria RepID=B0TKQ1_SHEHH Length = 269 Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 113/263 (42%), Gaps = 12/263 (4%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 ++I+ K + V P++ + G K + W+ TLT D N +L E Sbjct: 5 VQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQELTFV 64 Query: 69 NYPEAGLYLA---EMLYLPID-LIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 N P + + L P + +++ K T + + + + L + L + + QL Sbjct: 65 NEPYQNRFQSVQLSFLSQPSERVLKQMAKPETTSTPLLSPPT--LTVSDSLNFAFTQLVA 122 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 + S +Q+ L L V L +L + L ++P T Sbjct: 123 MSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLTLREKVSRYLSADPSASHTIELT 182 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVK----PIS--EIARENGY 238 + +S +TL RRL EG SF+ IL VR+ +A+ +Q+ P+S E+A GY Sbjct: 183 CSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRCGY 242 Query: 239 KCPSRFTERFHNRFNITPREIRK 261 + +RF++RF ++F I+ ++ K Sbjct: 243 QSEARFSQRFKSQFGISLKQYMK 265 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 18/226 (7%) Query: 55 QIILFPC----GYEF--------YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIR 102 Q I PC G +F ++EN +G LA ++ +F++L Sbjct: 11 QFIEPPCLVAIGADFKGQIAINSFVENANISGFRLAACFIEKLNQQLNFRELCDGVFSGN 70 Query: 103 NKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL----AMGVLLSLGVNHVNHLLLSY 158 SF L P ++ + LK V +G + + L +M + L + + Sbjct: 71 VAVSFTL--RPGIVDIYSALKAMVEKGCGNRSNDELLDINSMLLYLLMHFEQSASQAETR 128 Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 S SL SR L+ + WT ++A+ +Y+S ST+ R+L EG +F +L RL+ A Sbjct: 129 SYSSLSSRIRALISKDLTKPWTLKEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTA 188 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + + +S IA G+K S F F + TP RK ++ Sbjct: 189 QKMVCNSDASVSAIAELCGFKHASYFGACFRKEYGATPLAYRKQAQ 234 >UniRef50_Q1YPC6 Transcriptional regulator OruR n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YPC6_9GAMM Length = 333 Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 SYS ++ R LLL TA VA+ +Y+S STL RRL EG FQ +LD VR Sbjct: 222 SYSG-AVSERVVQLLLLSGSEFPTAAAVAQQMYMSESTLQRRLTREGTRFQPLLDQVRYR 280 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 AL +Q T P +EIA G+ + F F TP IR+A Sbjct: 281 LALEYLQGTDLPAAEIAALLGFNNSANFRRSFKRWSGTTPLHIRQA 326 >UniRef50_A7IPD7 Helix-turn-helix-domain containing protein AraC type n=69 Tax=Proteobacteria RepID=A7IPD7_XANP2 Length = 347 Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 151 VNHLLLSYSKQSLISRCYNLLLSEPGTKWTA-NKVARYLYISVSTLHRRLASEGVSFQSI 209 N L+ Q L +R L + P T W +AR L + STL RRLA EG +++ I Sbjct: 221 ANILVRYRHDQGLAARVKARLRAVPATAWPGFEDLARQLRLPASTLRRRLADEGQTYRDI 280 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 D++R A + ++ KP+ EIA E G+ PS F F +P R+ S Sbjct: 281 KDELRRVLAEALLREGAKPVGEIAAELGFSEPSAFHRAFRKWTAQSPGAFRRVS 334 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 51/101 (50%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 S+ +L YN+++S+ KW ++ LY+S STL R+L E SF + + R+N A Sbjct: 178 SQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKA 237 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 ++ + I+ +A GY S FT F F TP E Sbjct: 238 TKLLRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPSEF 278 >UniRef50_B4X4X5 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4X5_9GAMM Length = 341 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 50/85 (58%) Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 G T+ ++A L++S TL+RRL E + ++D RL A +QTT PIS +A + Sbjct: 256 GELLTSEEMALRLFMSSRTLNRRLEKENTHIRLLMDQARLEYAKRLLQTTSLPISTVANK 315 Query: 236 NGYKCPSRFTERFHNRFNITPREIR 260 +GYK PS F+ F F+++P + R Sbjct: 316 SGYKNPSSFSRAFKRYFDVSPGQCR 340 >UniRef50_A9MGM0 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGM0_SALAR Length = 296 Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 58/108 (53%) Query: 154 LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 ++LSYS + + +L++S+ W + +A + +SVST +++ + S S + + Sbjct: 175 MILSYSSLTTSEKVASLIMSDYSKNWQSKDLAMQMNMSVSTFKKKMYKDTGSVSSYITKI 234 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 ++ AL ++ T +PI+ IA GY S FT F F I P E+RK Sbjct: 235 KMIEALRQLRRTNRPINSIAISLGYTSSSYFTSVFKKHFKIFPSEVRK 282 >UniRef50_A1TVA8 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=A1TVA8_ACIAC Length = 366 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%) Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 L+ R L P +A +A L++S TLHR+L EG S Q++ D+ R A + Sbjct: 245 LVQRVRQALAHAPELSHSAQTIAAALHVSARTLHRQLREEGASLQALKDEARQQRARDLL 304 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 Q T +P+ +AR G+ F F ++P E R+ Sbjct: 305 QRTDRPVKAVARAAGFASEKSFMRAFRQWTGMSPAEYRR 343 >UniRef50_Q1ZU86 Putative CFA/I fimbrial subunit D n=1 Tax=Photobacterium angustum S14 RepID=Q1ZU86_PHOAS Length = 239 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 1/112 (0%) Query: 151 VNHLLLS-YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 VN ++S +++ +I+ L+ ++ KW+ + + LY+S +TL+R L+ + S + + Sbjct: 125 VNDKMISKFNESDIINSITCLVSNDLKRKWSYDLICELLYLSPATLYRELSKKNTSLKEL 184 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +++RL A + ++ T P+ +IA E G+ S F + F FN TP E RK Sbjct: 185 TNNLRLTEAATLLRGTKLPVGKIANEVGFGSSSYFGKVFKQTFNCTPVEYRK 236 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 102/245 (41%), Gaps = 10/245 (4%) Query: 29 MPA--LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA--GLYLAEMLYLP 84 MPA L + +G+K + W + P G E + N P+A G+Y A + Sbjct: 1 MPAAGLVIVIEGRKEVLWGAECNIYHAGDAFVLPAGAEVDVVNEPDADTGVYRALFVRFS 60 Query: 85 IDLIESFQKLYT--VTDQIRNKTSFFLPQN--PELIYCWEQLKTSVSRGFSTKIQEHLAM 140 L+ +L+ + ++ +S + +I+ E L + + S ++ +H + Sbjct: 61 RALVIEAARLWPQLIVREVPLGSSITISPTLCSAIIHSGEVLAGPLDQ--SRRVVDHRLL 118 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 VLL L L+ Y S+ L+ W+ VA L +S +TL RRL Sbjct: 119 EVLLILAEQGALPLMPKYVDGSVTEAVRLLIRHRLDHAWSTAAVAASLSMSEATLRRRLR 178 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 E S +++L R+ A + ++E GY S F+ RF + F P +R Sbjct: 179 DENQSLRALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQDAFGQAPSTVR 238 Query: 261 KASRE 265 +A ++ Sbjct: 239 RARKK 243 >UniRef50_D1E8F4 AraC protein n=21 Tax=Neisseria RepID=D1E8F4_NEIGO Length = 239 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 7/225 (3%) Query: 16 MHKHHEIHR-VKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA- 73 + H ++R V P + +R+G K + W L + + + G + N P++ Sbjct: 19 VQHHTALYRSVAVYEPTVVIVRRGCKKLRWAGRELRIAAGEAVGLAGGQTLDVINIPDSD 78 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS-RGFST 132 GLY A+ + + +E F Y + + LP + ++ ++ Sbjct: 79 GLYQAQWIAFEQETVERFAAQYGTAQAVCDAVK--LPHPGRMGAAFDYAAAVLADEEVPH 136 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 E GVL L H Y +L+ + L+ ++ W++ +A+ L S Sbjct: 137 NAAEAALCGVLAWL--QHDGIGFAVYGGVNLMRQIRKLITADMAADWSSAMLAQRLNCSE 194 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 + L RRLA + +F+++L DVR+ AL+ +Q T +++IA G Sbjct: 195 AALRRRLARQDTNFRTLLTDVRMMRALTLLQVTQWSVAQIAGAVG 239 >UniRef50_A3VM96 Helix-turn-helix, Fis-type protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VM96_9RHOB Length = 334 Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 51/84 (60%) Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 A+++A L I TLHRRL+ EG++F +L DVR A + +T + ++EIA G++ Sbjct: 248 ADRIAGLLGIDRRTLHRRLSREGLTFSGLLHDVRREFAQQYVVSTDRSMAEIALLVGFES 307 Query: 241 PSRFTERFHNRFNITPREIRKASR 264 P+ F+ + + TPR+ R A+R Sbjct: 308 PAVFSRWYRDAMGQTPRDSRAAAR 331 >UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2A2_ACICA Length = 339 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%) Query: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 L SYS+ + N+LL +P +++A +L +++ TL R LA EGV+++ ++DD+R Sbjct: 236 LGSYSQ-----KVRNILLQQPSQMPRIDEMAAHLQVNLRTLQRHLAIEGVTYEQLIDDIR 290 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + A ++TT + E+A + GY S F+ F I+PR R Sbjct: 291 KDLAEDLLKTTNLTVEEVAIQLGYSEVSAFSRAFKRWKGISPRNFR 336 >UniRef50_Q5P369 Transcriptional regulator, AraC family, n=5 Tax=Betaproteobacteria RepID=Q5P369_AZOSE Length = 378 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 55/107 (51%) Query: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 +L + ++ R +LL + VA L++S TLHRRL EG SF++I D +R Sbjct: 247 MLYRRDRDMVYRVRDLLRDALPDNLSLEAVANRLHLSARTLHRRLEEEGSSFRTIKDALR 306 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + AL+ + T +PI++I E GY PS F ++P R+ Sbjct: 307 RDIALARLTKTAQPIAQIGAELGYADPSAFYRAVVAWTGMSPERFRR 353 >UniRef50_C1DS97 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=C1DS97_AZOVD Length = 338 Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 48/86 (55%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T A L+++ TL RRL++EG SFQ I D +R + A+ + PIS++AR+ G+ Sbjct: 252 TIQSTAAALHLTERTLRRRLSAEGSSFQGIKDGMRRDMAIHYLTQPSMPISQVARQLGFS 311 Query: 240 CPSRFTERFHNRFNITPREIRKASRE 265 PS FT F P+ R A+R+ Sbjct: 312 EPSAFTRAFKQWTGELPKTYRDAARK 337 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISE 231 LS P W ++ LY+S S L R+L EGVSF I+ D R+ A + T PIS+ Sbjct: 151 LSAP---WRLKDISSRLYLSESLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCYPISK 207 Query: 232 IARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +A+ GY S FT F F ++P + + S E Sbjct: 208 VAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSE 241 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 47/83 (56%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 +A++VA L +SVSTL RRL E S+QSI DD R A++ + I++IA G+ Sbjct: 258 SADEVASALNMSVSTLRRRLNDEKTSYQSIKDDCRKEAAITYMNAPQLSINDIAALMGFD 317 Query: 240 CPSRFTERFHNRFNITPREIRKA 262 PS F F +TP E RK+ Sbjct: 318 EPSAFFRSFKKWTGMTPGEYRKS 340 >UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A5EF29_BRASB Length = 382 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 54/92 (58%) Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 +L+ +PG T +++A + +S+ TL+RRLA++G+++QSI+DD+R A+ ++ T P Sbjct: 262 TILVRQPGRFATIDEIASEIGMSLRTLNRRLAADGITYQSIIDDMRKTLAIEYLERTTLP 321 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + +I G+ S F + F +P R Sbjct: 322 VEQICARVGFSDTSNFRKAFKKWTGQSPSSFR 353 >UniRef50_Q93SE2 Putative uncharacterized protein n=1 Tax=Escherichia coli RepID=Q93SE2_ECOLX Length = 245 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 9/105 (8%) Query: 163 LISRCYN--------LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 L+ RC N ++ S P W ++ LY+S S L R+L E VSF IL D+R Sbjct: 127 LLFRCINSVALKVRYIICSSPSRAWRVKDISNSLYMSESLLKRKLQEEKVSFSQILLDIR 186 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 ++NA I + + +++IA GY F F F ITP ++ Sbjct: 187 MHNARQLISSKLS-VNQIAIRCGYASTPYFISVFREYFGITPHQM 230 >UniRef50_P43459 Transcriptional activator perA n=24 Tax=Escherichia coli RepID=PERA_ECO27 Length = 274 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 62/110 (56%) Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQS 208 N + +++LS S +S++ R ++ + W V+ +++S S L ++L E ++F+ Sbjct: 152 NDIVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLNKENLTFKK 211 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 I+ D+++ +A ++TT K I EI+ G+ S F + F +N TP++ Sbjct: 212 IMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKK 261 >UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=pseudomallei group RepID=Q2SUV3_BURTA Length = 398 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 52/93 (55%) Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 L +P T + +A L +SV TL RRLA EG +++++D++R A + + TT ++ Sbjct: 306 LAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAEALLATTTLTVA 365 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 E++ GY PS F F ++P E R+++ Sbjct: 366 EVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA 398 >UniRef50_A3YBQ0 Transcriptional Regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YBQ0_9GAMM Length = 336 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 146 LGVNHVNHLLLSYSKQSL--ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 L + H N LL + +S ++R + L P + VA+ L IS TL RRL E Sbjct: 216 LHLEHANSLLARHLNRSWQEVTRMTIMQLGIPDI--SKQGVAQQLNISPRTLQRRLKEED 273 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + FQS+LD+++ +L I T P IA E G+ S F FN TP+ +R+ Sbjct: 274 IHFQSLLDEMKKELSLKQITETDIPFKRIANELGFAEASTFYRAIKRWFNTTPQTLRQRG 333 Query: 264 R 264 R Sbjct: 334 R 334 >UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKX1_ALISL Length = 259 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 15/250 (6%) Query: 17 HKHHEIHRVKPLM---PALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 +K E+ ++K ++ P + + G K I+ + + N IL + EN P Sbjct: 7 YKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNFENIPIN 66 Query: 74 GLYLA-EMLYLPIDLIESFQ---KLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG 129 GL+ + ++++ +E F+ K + V+ K + L +L++ + + +++ Sbjct: 67 GLFFSKQIIFFKPPKVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVILKNIN-- 124 Query: 130 FSTKIQEHLAM-GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 H+ + G+ L L + +L S+ S + Y +L + V L Sbjct: 125 -----TRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYEVLEKMQPSDHKIENVCSIL 179 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S +TL RRL G F+ I+ VR+N AL +Q + +I+ GY+ F Sbjct: 180 GVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELLVVYF 239 Query: 249 HNRFNITPRE 258 F ITP+E Sbjct: 240 KEEFGITPKE 249 >UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K0J1_AGRVS Length = 343 Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 42/79 (53%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +KVAR L +S TL RRLA GVSFQS+LDD+R N L + + +IA G+ P Sbjct: 259 SKVARALGMSERTLRRRLAESGVSFQSLLDDLRKNRTLELLGNRNMSVEQIAFAVGFSDP 318 Query: 242 SRFTERFHNRFNITPREIR 260 F F TP +R Sbjct: 319 HNFRRAFRRWTGTTPGALR 337 >UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IA59_VIBHO Length = 317 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 130 FSTKIQEHL--AMGVLLSLGVNHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVAR 186 +++++QE L A + +++ V ++L + + + ++ +L PG A +VA Sbjct: 180 YASELQEKLPSANKLTVTMCVQSCENMLAALQATDDIAAQVQAFILQSPGKFPGAEQVAS 239 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 + S+ TL+R+L+ G ++Q +LD+ R N A+ +Q T I +I+ G+ P+ F + Sbjct: 240 HFNCSLRTLNRKLSESGQTYQKVLDNTRQNLAVRYLQQTSMKIEDISTLVGFSEPANFYK 299 Query: 247 RFHNRFNITPREIRKASR 264 F TP E R ++ Sbjct: 300 AFKKWTGKTPIEYRNDAK 317 >UniRef50_A0Z5W5 Transcriptional Regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W5_9GAMM Length = 343 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T VA +L + + TL R L +EG SFQ +L VR +AL+ + +PI++I E GY Sbjct: 258 TQTAVAAHLGVEIRTLQRHLKAEGASFQELLATVRKRHALNQLSCN-RPIAQIGYELGYT 316 Query: 240 CPSRFTERFHNRFNITPREIRKASR 264 PS F F F ++P K ++ Sbjct: 317 DPSAFCNAFKKWFGVSPGNYFKVAK 341 >UniRef50_B7RTY0 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RTY0_9GAMM Length = 344 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 62/102 (60%), Gaps = 1/102 (0%) Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 +S+ ++L+EPG TA +VA+ L + TL R+L++EG ++Q+IL+++R A + Sbjct: 244 FVSQIREIILAEPGYFPTATEVAQSLECTTRTLRRKLSNEGSNYQTILNEIRSEIAKDYL 303 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++ + PI +I+ G+ S F+ F +I+P++ R +R Sbjct: 304 KSNL-PIEKISEMLGFSEASAFSNAFKTWESISPKDYRLNNR 344 >UniRef50_D1AE55 Transcriptional regulator, AraC family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AE55_THECD Length = 351 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 44/83 (53%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VA L I+ TLHRRL G SF+++ D+ R A+ + TT + EIAR GY + Sbjct: 264 EVAAELNITTRTLHRRLERAGTSFRALADEARQELAVELLTTTALTVGEIARRLGYSETA 323 Query: 243 RFTERFHNRFNITPREIRKASRE 265 FT F R + P RK + E Sbjct: 324 AFTHAFTRRHGVPPSRYRKDAAE 346 >UniRef50_C9QLV9 Transcriptional regulator AraC family n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QLV9_VIBOR Length = 342 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 61/105 (58%), Gaps = 1/105 (0%) Query: 160 KQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 K LI + YN+L + ++ +AN +++ LYI+V TL+R+L+ S++ I++ R A Sbjct: 234 KNDLILKIYNILNELDNLSQVSANSISKALYINVRTLNRKLSQMNTSYRGIIEGYRKEKA 293 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 L +Q++ I+E+A + GY S F+ F +P +I+ +S Sbjct: 294 LHLLQSSSSNITEVAFQLGYADLSSFSRAFKRWTGTSPMQIKPSS 338 >UniRef50_C9YEB3 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEB3_9BURK Length = 394 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%) Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 L+ + LL ++P +A +A L +S TLHR+L EG + Q++ D+VR A + Sbjct: 290 LVQQVRQLLSAQPQDTHSAEALAALLNVSPRTLHRQLREEGATLQALKDEVRHGKASELL 349 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + +PI ++A G++ F F TP E R+++ Sbjct: 350 LRSQRPIKQVAEAAGFQNEKSFIRAFKTWSGQTPAEFRRSA 390 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 1/101 (0%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 + + + +LL G T VAR L IS +L RRLA EGVSF +LD R A Sbjct: 227 EGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRLAEEGVSFSDLLDAERQQLAEQ 286 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + T +K + E+A GY + FT F +N +P E R+ Sbjct: 287 LLSTQMK-LDEMALHLGYGDTASFTRAFRRWYNCSPGEYRR 326 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 51/102 (50%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 +L + N LL+ P + + VA L +S TL R+L +EG S+Q +LD VR A Sbjct: 239 ALSQQVSNCLLNSPDGYPSLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWY 298 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + T + +IA GY+ S F+ F F +TP +R Sbjct: 299 LLETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTPHAMRSGG 340 >UniRef50_Q2RVL5 Transcriptional regulator, AraC family n=2 Tax=Alphaproteobacteria RepID=Q2RVL5_RHORT Length = 351 Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 47/80 (58%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 VA L ++ TL RRLA EG+SF ++DD+R A + P+++IA+ GY PS Sbjct: 269 DVAEALGLARWTLQRRLADEGLSFSDVVDDLRRTLAKRYVSQPHVPLADIAQFLGYSEPS 328 Query: 243 RFTERFHNRFNITPREIRKA 262 F+ F F I+ +++R+A Sbjct: 329 AFSRAFVRWFGISAQQMRRA 348 >UniRef50_C2LP41 AraC-family transcriptional regulator n=2 Tax=Proteus mirabilis RepID=C2LP41_PROMI Length = 308 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 59/112 (52%), Gaps = 1/112 (0%) Query: 151 VNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL-ASEGVSFQSI 209 +N L+ + +SR +N +L+EP WT + +A +S +T R+ A+ + + Sbjct: 192 INSSWLALLAEPRLSRVFNSMLNEPQKGWTLDSLANVASMSRATFVRQFKATANTTPGEV 251 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 L +R+ ALS +Q +S+IA GY+ + F++ F + FN P + +K Sbjct: 252 LQSIRMLKALSLLQQNKYTLSDIAERVGYQSEAAFSKAFKSVFNCRPGQWKK 303 >UniRef50_A4ABA7 Transcriptional regulator (AraC family protein) n=1 Tax=Congregibacter litoralis KT71 RepID=A4ABA7_9GAMM Length = 345 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 49/85 (57%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 + ++VA I+ TL++RL EG +FQ I D+ RL+ A++ + + + I EI+ E GY Sbjct: 247 SIHQVASSYSITPQTLNKRLKQEGYNFQRIKDEYRLSKAINMLSSGLHSIQEISEELGYL 306 Query: 240 CPSRFTERFHNRFNITPREIRKASR 264 P FT F +PR+ + A+R Sbjct: 307 EPRSFTRAFKRLTGASPRDYQPATR 331 >UniRef50_Q89EK0 Transcriptional regulatory protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89EK0_BRAJA Length = 345 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQ 223 + LLL+ G T +VA +L + T+HR LA+ G SF +ILD R + + I Sbjct: 233 VDEVVRLLLA--GGDCTVERVAEHLACTRRTIHRHLAASGTSFSAILDAQRADLVVKLID 290 Query: 224 TTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +P+++IA + G+ S F RF T RK R Sbjct: 291 DPGRPLADIAAQLGFSAQSAMARWFRGRFGCTITAWRKGVR 331 >UniRef50_B2UHA2 Transcriptional regulator, AraC family n=2 Tax=Ralstonia pickettii RepID=B2UHA2_RALPJ Length = 358 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P + T + +AR+L ++ T+HR L EG +F SILD VR A+ + + +EI+ Sbjct: 243 PSGRATVDHIARHLGVNRRTIHRHLTQEGTTFSSILDAVRSELAVRYLDQGERQCAEISG 302 Query: 235 ENGYKCPSRFTERFHNRFNITPRE--IRKAS 263 G+ PS FT F F +P + + KAS Sbjct: 303 FLGFSEPSAFTRWFRGTFGCSPTQFKVSKAS 333 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 50/83 (60%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T + VA L +S STL R+L S+ +SF ++ R+N A + ++ T K I+EIA + G+K Sbjct: 181 TIDMVAPKLGMSASTLKRKLQSDKLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK 240 Query: 240 CPSRFTERFHNRFNITPREIRKA 262 + F+ F + ITP+E R + Sbjct: 241 TAAHFSTSFKSVKGITPKEFRDS 263 >UniRef50_Q1N5E2 Transcriptional Regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E2_9GAMM Length = 341 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 L +L H + LL ++S S ++ L+ T +VA L +S TL RRL E Sbjct: 219 LHTLHRAHADQLLAAHSNTSWKAKVIKTLVESGHYHMTREQVANKLNVSTRTLQRRLQQE 278 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +F ++D+ R A I T + + +IA + G+ S F H F+ TP E+R++ Sbjct: 279 NTNFIDVMDEQRRVKAEELIIKTDRSLKQIAEDLGFAESSTFYRACHRWFDCTPNELRQS 338 >UniRef50_C6LF57 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF57_9FIRM Length = 309 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 P T K+ +S STL R +E G S D ++ A + TT++ ISEI Sbjct: 217 PEENLTREKLCTMTGVSESTLRRLFKAEMGKSIYEFTKDTKMMYAAHLLMTTMESISEIG 276 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRKASRE 265 GY+ PS FT RF F ++P+ RK SRE Sbjct: 277 YRLGYESPSYFTRRFRENFGVSPQTYRKNSRE 308 >UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP70_ALCBS Length = 345 Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 43/82 (52%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA L ++V TLHRRLA E S+Q +LD VRL A + TT P ++IA GY Sbjct: 259 VAERLGMNVRTLHRRLADEQQSWQKLLDSVRLQQARHLLTTTSLPQADIAAALGYSDIRS 318 Query: 244 FTERFHNRFNITPREIRKASRE 265 F F +TP + R ++ Sbjct: 319 FQRSFKRHTTMTPGQYRNTPKD 340 >UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=unclassified Gammaproteobacteria RepID=A4A9K9_9GAMM Length = 336 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 45/83 (54%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VA L +S T RRL EGVSFQ++LD+VR +A ++ PI+ IA + G+ PS Sbjct: 251 QVATMLNMSPRTYRRRLTEEGVSFQALLDEVRAEHATRHLRERRLPIASIAYQLGFNDPS 310 Query: 243 RFTERFHNRFNITPREIRKASRE 265 F + +TP +R E Sbjct: 311 NFRRAYRRWTGVTPGAVRNKGDE 333 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 59/107 (55%), Gaps = 1/107 (0%) Query: 156 LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 L Y+ +S++ R NLL+ + + +AR L++S TL R+L+ G ++ ++LD++RL Sbjct: 242 LGYA-ESIVERVRNLLIRGNNGYPSLDALARELHLSERTLKRKLSDYGATYSALLDEIRL 300 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +AL ++ T + EIA GY + F+ F +P R+A Sbjct: 301 RDALRLLEGTHLTVEEIAARVGYTDRANFSRAFRRWTGTSPSSRRRA 347 >UniRef50_A1U2L9 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2L9_MARAV Length = 340 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 55/95 (57%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 L++S+PG T +AR L IS TL + LAS G SF+ + +++R + A ++ T P+ Sbjct: 243 LIMSQPGRPCTTENIARRLDISPRTLRQHLASAGTSFRELRNEIRESFATLYLKDTNVPL 302 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 I+ + G+ + FT+ + + TP ++R+ +R Sbjct: 303 ESISEKLGFSDQAGFTKAYRSWTGKTPGDVRRQAR 337 >UniRef50_Q397M3 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=Q397M3_BURS3 Length = 335 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 53/103 (51%) Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 +Q+ SR L+ + G T A+ L ++ T+HRRLA EG S++ IL+ VR A+ Sbjct: 232 QQAFSSRIRRLMFEKVGDFPTQRTTAQLLNVTPRTMHRRLADEGTSYREILESVRHKLAI 291 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +++T + EIA GY F F ++P E R++ Sbjct: 292 ESVKTGKLSLQEIAFLLGYDSLGNFRRAFRRWEGMSPSEYRQS 334 >UniRef50_A8TQD3 Transcriptional regulator, AraC family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TQD3_9PROT Length = 325 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Query: 136 EHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 E L +G+ S G+ V L ++ Q I L+ +EP WT +A + +S S Sbjct: 181 ELLRVGIGQSAGLRSV---LEAFQDQQ-IGGALQLIHAEPERSWTVESLAASVGMSRSRF 236 Query: 196 HRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNI 254 R + G S L D RL ALS + + ++A GY+ P+ FT F +F + Sbjct: 237 AERFSDLMGAGPMSYLTDWRLQKALSLLDDARCSVQQVASRTGYQSPAAFTRAFTGKFGL 296 Query: 255 TPREIRKA 262 P E R++ Sbjct: 297 APTEYRRS 304 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 162 SLISRCYNLLLSEPGTKW-TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 SL SR +L S+ G + T N VA LY+S TL RRLA+EG S+Q + D +R + A+ Sbjct: 231 SLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLAAEGKSYQGVKDALRRDAAIH 290 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 + + ++A++ G+ S F F +TP Sbjct: 291 LLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTP 326 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 48/82 (58%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 + +AR++ +S TL RRL EG SF++I+ DV+ A+ +QTT PI +IA E GY+ Sbjct: 261 DDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNLPIQQIALELGYEDL 320 Query: 242 SRFTERFHNRFNITPREIRKAS 263 F F TP + R+++ Sbjct: 321 PNFYRAFKRWTGKTPGDYRQSN 342 >UniRef50_Q46UH7 Helix-turn-helix, Fis-type n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46UH7_RALEJ Length = 352 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 45/87 (51%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P + +VA L + T+HR+L EG SF SILD+VR AL ++ +P+S +A Sbjct: 243 PSGNCSVERVASQLGVDRRTVHRKLLQEGASFSSILDEVRATLALQYLRHLERPVSYVAV 302 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRK 261 G+ S F+ F + F +P R Sbjct: 303 LLGFSMQSAFSRWFRDHFGCSPSAWRS 329 >UniRef50_Q7MJE3 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJE3_VIBVY Length = 243 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 55/96 (57%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 ++ S+ KW ++ L++S STL+R L +EG + + I+ +R+ N+ + T I Sbjct: 146 IINSDIKKKWNYKEICSLLFVSHSTLYRTLKNEGKTLKMIVLHIRIINSQKLLVNTNMSI 205 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +EI+ G+ PS F+ +F + ++P E R+ +++ Sbjct: 206 NEISNRCGFNSPSYFSRKFKDSVKMSPTEYRRMNKK 241 >UniRef50_Q1LED5 Transcriptional regulator, AraC family n=3 Tax=Burkholderiales RepID=Q1LED5_RALME Length = 363 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 50/87 (57%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 PG + TA++VAR+L + TLHR L++EG++F ++L +VR + + + P+ E+A Sbjct: 250 PGGRCTADQVARHLGVDRRTLHRYLSAEGLTFSTLLHEVRSELVMRHLLESDLPMGEVAG 309 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRK 261 G+ S F+ F F + + R+ Sbjct: 310 LLGFSAQSSFSHWFQTVFGCSATDWRR 336 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VA LY+S TL RRL E SFQ+++D VRL A + +T +S+IA GY + Sbjct: 260 RVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLLASTTMNLSQIADSLGYADAA 319 Query: 243 RFTERFHNRFNITPREIR 260 FT F ++P R Sbjct: 320 NFTRAFKRWTGLSPSHFR 337 >UniRef50_Q2S7F1 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7F1_HAHCH Length = 327 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 56/103 (54%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 + L R +L + G + ++A L++SVSTLHR+LA +G +++++L +V+ AL Sbjct: 224 EQLPRRVKEMLYAGAGEFPSQTELASRLHMSVSTLHRKLAEQGAAYKALLAEVKKELALQ 283 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 ++ + + EIA+ G+ S F F TP E RK S Sbjct: 284 HLRDSRLTVDEIAQLLGFSDASNFRRAFVGWTGETPSEFRKRS 326 >UniRef50_B4EPV9 AraC family regulatory protein n=5 Tax=Burkholderia cenocepacia RepID=B4EPV9_BURCJ Length = 329 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 159 SKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 ++ ++ R LL PG T + VAR L IS TL RRL EG +F+++L +VR Sbjct: 222 AEAGIVERVRAALLELIPGGLATTDGVARTLAISKRTLQRRLGDEGANFKTLLAEVREKL 281 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 A + + P S+IA GY+ P+ F F +TP R Sbjct: 282 AWHYLDRSDLPYSQIAFLLGYQDPNSFFRAFSEWTGMTPEAAR 324 >UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B0KIB9_PSEPG Length = 359 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 48/82 (58%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VA L + T+ RRL +G+SF +++D VR A +Q + PISE+A GY S Sbjct: 272 QVAEQLRLPSWTVQRRLQEQGLSFSTLVDTVRQELATYYLQQSALPISELALLLGYSEIS 331 Query: 243 RFTERFHNRFNITPREIRKASR 264 F+ F F+++P++ R+A + Sbjct: 332 AFSRAFRRWFDVSPKQWRQAHK 353 >UniRef50_Q8GA34 AraC-like transcriptional regulator n=2 Tax=Escherichia coli RepID=Q8GA34_ECOLX Length = 271 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 55/105 (52%) Query: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 L++ + + + N + + P +W N +A IS ++ +RL SEG SF ++ VR Sbjct: 161 LMASTAVTFTEKIRNQIENNPSKRWCLNMIADEFNISEISVRKRLESEGTSFSNLFLKVR 220 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 + ++ + I +I++ G++ S F + F + F ITP+++ Sbjct: 221 MEKSMQLLLQNELQICQISKSVGFRSTSYFIKIFKDYFGITPKQL 265 >UniRef50_B0KFL7 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas putida GB-1 RepID=B0KFL7_PSEPG Length = 342 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQ 223 + R +LL P + T +VA L ++ TL R LAS+G+ F+ LD +R A ++ Sbjct: 237 VERKIQMLL--PAQRCTLEQVALALNMNSRTLQRHLASDGIEFEGYLDGIRRCQAQQMLR 294 Query: 224 TTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 T + +IA E GY+ + F F+ITP E R+ Sbjct: 295 KTTLSVGQIANELGYRRTTSFCRAHLRWFDITPLEHRR 332 >UniRef50_A6D1B1 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D1B1_9VIBR Length = 347 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Query: 174 EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP-ISEI 232 E G + +KVA+ L+IS TL+R+L E SFQSILDD R A+ + T P ++E+ Sbjct: 258 ENGELLSVDKVAQQLHISRQTLYRKLEKEHTSFQSILDDTRKQFAVRWLTQTPPPSVTEL 317 Query: 233 ARENGYKCPSRFTERFHNRFNITPR 257 + G+K S F + F ++P+ Sbjct: 318 SYRLGFKDTSSFYKAFKRWHQVSPK 342 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA YL++S TL R+LA+EG SF +++D+VR +A S + T + +IA E GY + Sbjct: 260 VAEYLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIADELGYSDVAN 319 Query: 244 FTERFHNRFNITPREIRK 261 F+ F +P RK Sbjct: 320 FSRAFKRWSGRSPSNWRK 337 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 43/82 (52%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T +VA L++S TL RRL + G S+Q I D R A+ ++ T + IA GY Sbjct: 264 TLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDSSRFRRAIHQLEATDSSLESIAELLGYS 323 Query: 240 CPSRFTERFHNRFNITPREIRK 261 S FT+ F + +TP E R+ Sbjct: 324 DASNFTKAFKSWAEMTPSEFRQ 345 >UniRef50_B5WR29 Transcriptional regulator, AraC family n=2 Tax=Burkholderia RepID=B5WR29_9BURK Length = 333 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 48/88 (54%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P + A VAR+L +SV T+ R+L S G SF +++VR A+ + PI ++ Sbjct: 243 PLEQANAELVARHLRLSVRTMQRQLNSAGTSFSDQVEEVRGELAVRYMSNPTYPIGRVSA 302 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKA 262 GY FT F +RF++TPR+ R + Sbjct: 303 LLGYAQQGSFTNWFVSRFHMTPRDWRAS 330 >UniRef50_B5J4U5 Transcriptional regulator, AraC family protein n=3 Tax=Rhodobacteraceae RepID=B5J4U5_9RHOB Length = 300 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/244 (26%), Positives = 104/244 (42%), Gaps = 15/244 (6%) Query: 30 PALCRIRQGKKVINWETHTLTVDNNQIIL----FPCGYEFYIENYPEAGLYLAEMLYLPI 85 P LC I QG K I +LT Q ++ P IE PE Y+A + L + Sbjct: 55 PMLCLILQGTKEIGSNDKSLTAHAGQSLIVSHILPV-VSRIIEAGPEQP-YVALVFPLDL 112 Query: 86 DLIESF--QKLYTVTDQIRNKTSFFLPQNPELIYC-----WEQLKTSVSRGFSTKI-QEH 137 L+ S + + + +DQ + S L + + ++Q +T +R F I + Sbjct: 113 SLLRSLASEVVPSFSDQSSDPFSICLCDTDDALEGTMQRYFDQCETQQTRQFIAPITKRE 172 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 + M +LLS + LL S S + + + S K ++A+ +S S Sbjct: 173 IHMRLLLSPHAQILRKLLWHESTASRVFQATENIQSNLADKIIVGELAQSAGMSSSAFFE 232 Query: 198 RL-ASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R A G S D+RL A +Q + IS+IA GY+ ++F+ F +F TP Sbjct: 233 RFKAVTGTSPLQYQKDLRLLRARGELQASNAKISDIAFGVGYESSAQFSREFSRKFGRTP 292 Query: 257 REIR 260 R+ R Sbjct: 293 RQDR 296 >UniRef50_D1TMA7 AraC family transcriptional regulator n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMA7_9BURK Length = 334 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%) Query: 177 TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 + + A+ +A L ++ TLHRRLAS G+S+ ++L VR + A I+ P++E+A Sbjct: 243 SNYNADTLADILGMNRRTLHRRLASRGLSYSALLQQVRSDAAKRMIELNSIPLAEVAEAV 302 Query: 237 GYKCPSRFTERFHNRFNITPREIRKASR 264 G+ S F+ F + F + E ++ R Sbjct: 303 GFGSLSSFSRWFQSSFGCSASEWKRKHR 330 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 1/115 (0%) Query: 148 VNHVNHLLLSYSKQSLISRCYNLL-LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSF 206 +N+ N +L K+S+ + L+ ++ +++ A +VA+ L +S TL+R+L ++ S+ Sbjct: 224 LNYANQILSRLFKRSISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRKLKNDNSSY 283 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 I++ V+ A ++TT P++ IA + G+ S FT F ++P E R+ Sbjct: 284 SDIVEAVKKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAEFRR 338 >UniRef50_A5V7R9 Transcriptional regulator, AraC family n=2 Tax=Sphingomonas wittichii RW1 RepID=A5V7R9_SPHWW Length = 367 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 3/95 (3%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA---LSAIQTTV 226 L L+ ++ T KVA+ IS LH L S+G F L RLNNA L+ Sbjct: 228 LELNYSDSELTTEKVAKDCGISTRYLHYLLKSKGTRFYDYLWQARLNNAYQQLTDPALAR 287 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + ISEIA G+K + F+ F N+F +PRE+R+ Sbjct: 288 RTISEIAYAIGFKSSAHFSRAFRNQFARSPREVRQ 322 >UniRef50_B5WCL9 Transcriptional regulator, AraC family n=1 Tax=Burkholderia sp. H160 RepID=B5WCL9_9BURK Length = 338 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV---KPISEIAREN 236 TA VA L ISV TLHR LA +F L D R+N A +++ + + EI R Sbjct: 234 TAEAVADSLGISVRTLHRALAGCQQTFAEQLLDARVNCAQRMLESKIFSRMTVGEIGRRA 293 Query: 237 GYKCPSRFTERFHNRFNITPREIR 260 G+ PS FT R +TP ++R Sbjct: 294 GFADPSHFTRVMRRRLGVTPLQLR 317 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 51/106 (48%) Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 K L + LL E + VA L+++ TL R+LA EGV+FQ +LD VR +A Sbjct: 232 KHPLTALVRELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEGVTFQILLDQVRERHAK 291 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 + IS I+ + GY + FT F N TP++ R E Sbjct: 292 KLLNHHEYSISYISEKLGYSEVTHFTRAFKRWTNQTPKQYRNLREE 337 >UniRef50_UPI0001C362BB response regulator receiver protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C362BB Length = 482 Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 182 NKVARYLYISVSTLHRRLA-SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 N +A ++S + L R+ + + GVS S L+D R+N A ++ + + ISEIA + GY Sbjct: 397 NVLANEFFLSPAYLSRKFSQTTGVSIMSYLEDYRINVATDLLKGSERSISEIADQVGYYD 456 Query: 241 PSRFTERFHNRFNITPREIRKASR 264 + FT+ F ITP+E RK S+ Sbjct: 457 ANYFTKIFKKVKGITPKEFRKMSK 480 >UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5E051_VIBF1 Length = 255 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 6/229 (2%) Query: 30 PALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEML-YLPIDLI 88 P + I G K I+ + + T+ ++ I + EN+ E G ++++ + ++ I Sbjct: 23 PCIIWIVCGVKNISVDGYKYTLKKDEAIFLSGNSKISFENFTEDGFFISKQITFIRKPNI 82 Query: 89 ESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGV 148 ES +K + R+ + + +L E L + S + K + G+ L L Sbjct: 83 ESVRKNKFELSKYRS-----VKLDSQLKMTMEFLHQADSILNNIKTRSMWLDGLYLLLLD 137 Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQS 208 +L + S + Y +L + + L IS +TL RRL G F+ Sbjct: 138 YDYLEMLFRPDEISFNEKVYEILDKMDPKEHRIESICLVLNISKATLIRRLKKSGTQFKK 197 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 I+ VR+N AL IQ P+ EI+ GY+ F F + F I+P+ Sbjct: 198 IVRQVRMNKALFLIQKRTIPLDEISFSCGYQSMELFNLYFESEFGISPK 246 >UniRef50_A6B6J4 Putative CFA/I fimbrial subunit D n=2 Tax=Vibrio parahaemolyticus RepID=A6B6J4_VIBPA Length = 241 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 51/104 (49%) Query: 158 YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 Y+ L + Y L+ + KW+ +V + Y S STL+R+L S I+ + RL+ Sbjct: 126 YNYDPLEKKIYRLVSKDLKKKWSLEEVCKLTYTSKSTLNRKLKDNQTSMGQIISNARLDY 185 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 A I T + EI+ +G+ S F ++F +P++ RK Sbjct: 186 ATILITNTSLSVDEISMLSGFNSTSYFCKKFKESHGFSPKQYRK 229 >UniRef50_C6JDJ0 Two component transcriptional regulator n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDJ0_9FIRM Length = 517 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 G+SF L D+R+ A + ++T+ + +IA E GYK P+ F F R N+TP E RK Sbjct: 456 GISFSEYLSDIRMEKAENLLKTSSDKVRKIALEVGYKDPNYFNRAFKKRHNMTPEEFRK 514 >UniRef50_C5C1L5 Transcriptional regulator, AraC family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C1L5_BEUC1 Length = 284 Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 151 VNHLLLSYSKQS-------LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE- 202 + LL+S+S S ++R + + WT ++A ++SVS LHRR + + Sbjct: 152 LGELLVSWSTPSRIPAIDPAVARALTSMTDDVARAWTVAELAAVSHVSVSHLHRRFSDQL 211 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 G + L R A + T P++ + R G+ P+ + RF + +TP E R+ Sbjct: 212 GTTPMGWLAGARAERAAVLLVRTAAPVAAVGRAVGWSDPNYASRRFRGVYGMTPTEYRR 270 >UniRef50_Q397P9 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=Q397P9_BURS3 Length = 348 Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 48/89 (53%) Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 T + + +A L++ T+ R+LA EG +F+ + D+VR AL +Q T P++++ Sbjct: 249 ATGGSKSAIAELLFVHPRTMQRKLADEGATFEGVRDEVRQEIALRYLQQTTIPLAQLTSL 308 Query: 236 NGYKCPSRFTERFHNRFNITPREIRKASR 264 G+ S T+ F + P +IR +SR Sbjct: 309 LGFSDQSVLTQSSIRWFGMPPSKIRASSR 337 >UniRef50_A3YC06 Transcriptional regulator, AraC family protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YC06_9GAMM Length = 356 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 50/88 (56%) Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 ++ +++VA L +S TLHR+LA E +F +IL +VR + + + EI+ G Sbjct: 258 RFNSHEVAVKLNMSRQTLHRKLAQEDTNFSAILAEVRKEKVVHFLISDQHVFDEISEALG 317 Query: 238 YKCPSRFTERFHNRFNITPREIRKASRE 265 +K PS F F + FN+TP + R+ ++ Sbjct: 318 FKEPSAFYRAFKSWFNMTPNKYRQLMKQ 345 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 Q + R LLL PG +VA L++S TL RRL EG SF+++ D+VR A Sbjct: 258 QGVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQDEVREALADE 317 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + + EIA GY S F F TP ++ + Sbjct: 318 LLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQRGA 360 >UniRef50_P23774 987P fimbrial operon positive regulatory protein fapR n=1 Tax=Escherichia coli RepID=FAPR_ECOLX Length = 260 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 53/111 (47%) Query: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 L S + R LL S+ KW + +A ++IS ++ +RL E ++F ++ DVR Sbjct: 144 LFSSVAVTFSERIVTLLFSDLTRKWKLSDIAEEMHISEISVRKRLEQECLNFNQLILDVR 203 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +N A I + I IA GY S F + F + +TP++ +E Sbjct: 204 MNQAAKFIIRSDHQIGMIASLVGYTSVSYFIKTFKEYYGVTPKKFEIGIKE 254 >UniRef50_Q5LKF5 Transcriptional regulator, AraC family n=1 Tax=Ruegeria pomeroyi RepID=Q5LKF5_SILPO Length = 331 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 47/91 (51%) Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISE 231 LSE G +VAR L ++ TL RRL +GV + +I VR + A+ + TT + Sbjct: 239 LSEQGRLPDMAQVARDLNLAPHTLRRRLKGDGVDYSNIRKQVRRDMAVRLLATTGDSVES 298 Query: 232 IARENGYKCPSRFTERFHNRFNITPREIRKA 262 IA + G+ S F F + +TPR RK+ Sbjct: 299 IAAQTGFSEASAFIRAFRSWTGLTPRAYRKS 329 >UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GDX2_SILST Length = 386 Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 45/78 (57%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VA L +S TL R+LASEG SF +IL+ VR + AL +Q K +SEI+ GY S Sbjct: 298 QVAESLDMSQRTLSRKLASEGTSFFAILEGVRKSLALRYLQQNEKSLSEISFALGYSSLS 357 Query: 243 RFTERFHNRFNITPREIR 260 F + F ++ +P R Sbjct: 358 SFNDAFRRWYDQSPGSYR 375 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 11/167 (6%) Query: 97 VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL 156 V Q+ + +F L++ W+ L+ V + +++EH V LL Sbjct: 195 VYKQLLCEKVYFEQAQNSLVFAWQDLQQPVLTA-NAQLREHFEQLV---------KEDLL 244 Query: 157 SYSKQSLISRCYNLLLSEPGTKWTA-NKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 + Q + + ++L++P + ++VA L+++ +L R+L EG +F I +D++ Sbjct: 245 TKKPQEWVKKVRQVILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEGHTFLVIANDIQQ 304 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 A+ ++ T +SE+A GY PS F F TP+E +++ Sbjct: 305 QRAMHLLRQTQLNVSEVAYMLGYAEPSVFRRAFKRWTGKTPKEYQQS 351 >UniRef50_A0Z5W8 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5W8_9GAMM Length = 345 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 +A + + + TL R L +EG SF+S+L VR AL + + +PI I+ + GY S Sbjct: 265 IAEDIGLEIRTLQRSLKAEGTSFRSLLTGVRKEQALKCL-SMEQPIGVISADLGYLDQSA 323 Query: 244 FTERFHNRFNITPREIRKASRE 265 F+ F F ++P E RK+ E Sbjct: 324 FSAAFKGWFGVSPAEYRKSQSE 345 >UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGD7_RHOVA Length = 354 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 48/87 (55%) Query: 174 EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 +P + T +++A ++S STL RRL EG+S++ ILDD+R + A+S + T I IA Sbjct: 266 DPASWPTFDEIAAEFHLSSSTLRRRLDDEGLSYRVILDDLRRDLAISLLSRTDATIQSIA 325 Query: 234 RENGYKCPSRFTERFHNRFNITPREIR 260 + G+ S F F ++P R Sbjct: 326 FDLGFTESSAFHRAFKKWTGVSPGNYR 352 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 41/77 (53%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 +A+ L++S TL RRL EG SFQ++LDD R A + + E A G+ PS Sbjct: 254 LAQALHLSQRTLQRRLQEEGTSFQALLDDTRRELAEQYLAQPGMTLLETAYLLGFADPSN 313 Query: 244 FTERFHNRFNITPREIR 260 F F F++TP E R Sbjct: 314 FYRAFRRWFDVTPSEYR 330 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 47/92 (51%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 +L ++PG +VAR L + TL RRLA E +++ ++ + R+ A S ++ I Sbjct: 246 ILANQPGKYPGIIEVARALAMGERTLRRRLADEDTTYKQVVLEFRMELAASYLRGNAMSI 305 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EIA GY PS F F+ +TP R+ Sbjct: 306 QEIAYVTGYADPSNFHRTFNKHQGLTPNAYRR 337 >UniRef50_A0NPB0 Transcriptional regulator, AraC family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NPB0_9RHOB Length = 341 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 161 QSLISRCYNLLLSEPGTKWTANK-VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 +SL +R + GT + + VAR L +S +LHR L EG+ F ++LDD R A Sbjct: 232 KSLTARTRTAIYEGLGTGSSDQEAVARRLGLSRRSLHRHLGEEGLRFSTLLDDCRYRIAR 291 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 A+ T +++IA E Y + F F + +TP++ R++ Sbjct: 292 HALVDTSHSLAQIAFELDYSDQTAFERAFKRKTGMTPKQYRQS 334 >UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI20_ACIJU Length = 353 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 171 LLSEPGTKWTANK-VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 L+ +P ++W K +A+ + +S +T+ RRL EGVS+Q + +++R + A+ + T I Sbjct: 248 LILQPPSEWAELKDIAQQMNMSTATIQRRLKQEGVSYQQLKNNIRCDIAIERLSKTNDSI 307 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 I+ + + PS F F ++P RK S Sbjct: 308 QSISDDLNFHDPSAFHRAFKKWSGVSPGSYRKTS 341 >UniRef50_A0Y8B8 Probable transcriptional regulator protein, AraC family n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y8B8_9GAMM Length = 331 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 N +A +SV+TL RRLA G SF++I +D A+ I K I EIA + GY P Sbjct: 247 NTIAASAGMSVATLRRRLADVGTSFRAIKEDELAAQAMLLIHQG-KTIDEIAEQLGYSEP 305 Query: 242 SRFTERFHNRFNITPREIRK 261 F F RF +P E R Sbjct: 306 RSFRRAFQRRFGESPSEYRS 325 >UniRef50_A8LV09 Transcriptional regulator, AraC family n=1 Tax=Salinispora arenicola CNS-205 RepID=A8LV09_SALAI Length = 330 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 30/191 (15%) Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF 130 P A LA+ L + + E F TVT R+ FL N + WE + + Sbjct: 167 PSAASALADYLGVRVQQTERF----TVTFSARDSARPFLTANEPM---WEFFEPELRSRL 219 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 + HL G + +Q + + LL P + T + VAR L + Sbjct: 220 A-----HLERGATV---------------RQRVQAALLELL---PSGRGTVDGVARELTM 256 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 TL R+L SEG +FQ++L+D R + A + ++EIA GY PS F FH Sbjct: 257 GARTLQRQLKSEGTNFQTVLNDTRRSIAHRYLSEGNLSVAEIAFLLGYDEPSSFYRAFHA 316 Query: 251 RFNITPREIRK 261 TP R Sbjct: 317 WTGRTPLAARA 327 >UniRef50_A2SEG7 Transcriptional regulator, AraC family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SEG7_METPP Length = 318 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA---LSAIQTTVKPISEIAREN 236 T ++A L +S STLHR A E S + RL A L A Q ++ +SE+A Sbjct: 230 TVVRIAERLGVSPSTLHRAWAGEACSLADWIQTERLEAARRDLCAAQQRLRRVSELAYSW 289 Query: 237 GYKCPSRFTERFHNRFNITPREIR 260 G+K + F+ F RF +PRE+R Sbjct: 290 GFKDAAHFSRAFRRRFGCSPRELR 313 >UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJM9_9GAMM Length = 349 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 43/79 (54%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 TA+ +A L++S TLHRRL EGV F+ +L + R+ A ++ + E+A GY Sbjct: 264 TADVIAEQLHLSKRTLHRRLHDEGVVFRDLLRETRMTLAEQYLKDGKMTLPEVALMLGYS 323 Query: 240 CPSRFTERFHNRFNITPRE 258 S F F F ++PR+ Sbjct: 324 EQSAFNRAFRQWFAVSPRQ 342 >UniRef50_B1MF91 Probable transcriptional regulatory, AraC family n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MF91_MYCA9 Length = 339 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 48/86 (55%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P + + +VA+ L + T+HR+LASEG SF ++LD +RL+ A + + ++EI+ Sbjct: 243 PLGRCSVEQVAQGLGVDRRTVHRQLASEGTSFSALLDTIRLDLADHLVTSDRHSLTEISE 302 Query: 235 ENGYKCPSRFTERFHNRFNITPREIR 260 + PS F+ F ++PR R Sbjct: 303 MLAFSSPSNFSRWFRGHRAMSPRTWR 328 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 1/102 (0%) Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 L+SR LL + + VA+ L +S STL R LA E FQ++L ++R NA+ + Sbjct: 277 LVSRIRQLL-GQGHAEPNQESVAQALNMSRSTLKRHLARENTHFQAVLTNIRKENAVRLL 335 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 T + IA + GY + F+ F +TP RK S+ Sbjct: 336 LGTTHSLEHIAEQLGYSDQTNFSHAFRQWSGMTPGRFRKHSQ 377 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 + A+ L +S TL RRL EGV FQ +LD+ R A + ++ T I EIA G+ P+ Sbjct: 256 ETAKQLGLSEWTLQRRLKKEGVQFQQVLDETRKQIAETYLKATDLTIGEIAYLLGFSSPA 315 Query: 243 RFTERFHNRFNITPREIR 260 F F F + P+ + Sbjct: 316 AFHRAFKRWFGVNPKPFK 333 >UniRef50_B7KQC6 Transcriptional regulator, AraC family n=2 Tax=Methylobacterium extorquens group RepID=B7KQC6_METC4 Length = 366 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 11/133 (8%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQ----------SLISRCYNLLLSE-PGTKWTANKVARY 187 A +L+ +++ LLL YS++ SL +R N ++ P + +++AR Sbjct: 218 AGNAVLTGADPYLHDLLLGYSEEALAHRVRLAESLRTRVENAVMPLLPHGRPRISEIARA 277 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L S TL RRL EG+SF+S+L+++R + AL ++ T IS IA G++ + FT Sbjct: 278 LGTSQRTLSRRLTEEGLSFESVLEEMRRDLALRYLRDTRLSISRIAWLLGFREATAFTHA 337 Query: 248 FHNRFNITPREIR 260 F +P E R Sbjct: 338 FRRWTGRSPTEAR 350 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%) Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 N LL++ + + ++A +++ TL RRL EG S++ +L +VR A + +T Sbjct: 239 NKLLADLSSSPSLAQIATDHFMTERTLRRRLTDEGTSYRDLLAEVRQTMAEELLSSTGLS 298 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +SE++ GY PS F F N +PR+ A Sbjct: 299 VSEVSARLGYSSPSAFIHAFQKWHNCSPRQFLDA 332 >UniRef50_B9K5W8 Transcriptional regulatory protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K5W8_AGRVS Length = 338 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 158 YSKQSLISR-CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 Y + L+SR LL P + +A L +S +LHR + EG SFQ++ D R Sbjct: 225 YRRDRLLSREILRLLNDMPAAG--IDDLAEKLNLSTRSLHRHIKQEGTSFQALKDLSRQR 282 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 A + +T PI IARE G+ + F F + TPR A+R+ Sbjct: 283 LAERLLASTQWPIKRIARECGFDAEASFVRAFKSWTGQTPRAFAVAARQ 331 >UniRef50_A6FA01 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6FA01_9GAMM Length = 366 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 43/81 (53%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 N+VA L S TL RRL E ++QSI+D R ALS ++ T+ SEI+ G+ P Sbjct: 280 NQVAELLGTSAWTLRRRLYKEKTNYQSIMDTTRKGLALSYVRDTLLTFSEISYLLGFATP 339 Query: 242 SRFTERFHNRFNITPREIRKA 262 + F + F TP+ R A Sbjct: 340 AAFYKAFRRWTESTPKNYRHA 360 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 9/111 (8%) Query: 156 LSYSKQSLISRCYNLLLSE-----PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 +S + SL R NL+ ++ PG + +VA LY++ TLHRRL E SFQ I Sbjct: 246 ISPEEHSLAIRIRNLIGNDFQRPLPGLQ----EVAERLYMTTPTLHRRLREEQTSFQQIK 301 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 D R + A+ + + SE++ G+ S F F +TP++ RK Sbjct: 302 DHCRRDAAIGYLSSAQYTTSELSELMGFSDSSTFHRAFKKWTGLTPQDYRK 352 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 149 NHVNHLLLSYSKQSLISRCYNLLL-----SEPGTKWTANKVARYLYISVSTLHRRLASEG 203 H LL SL +R LL EP ++AR L++S TL RRLA EG Sbjct: 223 QHAEALLARLPSASLSARVIGLLGEQLAHGEPDRA----QLARALHLSERTLQRRLAEEG 278 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 ++Q +L D R A ++ P +EIA GY PS F F + P E R Sbjct: 279 CNYQQLLADTRRQLAERYLREGRLPAAEIALLLGYSEPSVFFRAFRQWTGLPPGEYRA 336 >UniRef50_C9P783 AraC-type DNA-binding domain-containing protein n=3 Tax=Vibrionaceae RepID=C9P783_VIBME Length = 302 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQS---ILDDVRLNNALSAIQTTVKPISEI 232 T T N +A +SVS H+ A GV+ +S L VRLN A IQ K +++ Sbjct: 214 ATSLTVNTLAEEANMSVSAFHQ--AFRGVTMESPLQYLKKVRLNKAKELIQIEGKRVNDA 271 Query: 233 ARENGYKCPSRFTERFHNRFNITPR 257 AR GY PS+F+ + FN TPR Sbjct: 272 ARLVGYSSPSQFSREYKRHFNHTPR 296 >UniRef50_B2U5Z6 Transcriptional regulator, AraC family protein n=9 Tax=Enterobacteriaceae RepID=B2U5Z6_ECOLX Length = 294 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 2/144 (1%) Query: 118 CWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT 177 C + KT + K++ + +L N V +L + S S+ + ++++ Sbjct: 149 CTDNKKTETDAIYD-KVRSSYLLSCILKKNKN-VGLILHAPSFVSVSEKIARIVMANYSR 206 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 W+ +++A + +S S+L RR+ E S + + ++L A+ ++ T PIS I+ E G Sbjct: 207 NWSNSELASAVLMSESSLKRRMYKEVGSISTFVHKIKLTEAIRKLRRTNTPISVISSELG 266 Query: 238 YKCPSRFTERFHNRFNITPREIRK 261 Y PS F++ F P+ IRK Sbjct: 267 YSSPSYFSKVFFKYLKTYPQNIRK 290 >UniRef50_A4XVD3 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XVD3_PSEMY Length = 336 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 ++QS+ SR +LL + G + + AR +++ TLHRRL +EG SF+S+L++VR A Sbjct: 229 AEQSMSSRVRRVLLEKQGGFPSLSLTARLFHLTPRTLHRRLQAEGTSFKSLLEEVRHTLA 288 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERF 248 ++ + EIA GY + F F Sbjct: 289 QEHLKAGRMTVEEIAYSLGYTDLANFRRAF 318 >UniRef50_A9AT03 Transcriptional regulator, AraC family n=13 Tax=Burkholderia cepacia complex RepID=A9AT03_BURM1 Length = 425 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 41/80 (51%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 +A L+++ TL RRL +G+SFQ++LDDVR + A + ++ IA GY P Sbjct: 345 LADALHMTERTLRRRLEKDGISFQALLDDVRRDEAARLLDDPALTVAAIAEHLGYSEPRA 404 Query: 244 FTERFHNRFNITPREIRKAS 263 F + TPRE R Sbjct: 405 FRHAYRRWTGRTPREGRGGD 424 >UniRef50_A5EI80 Transcriptional regulator, AraC family n=2 Tax=Bradyrhizobium RepID=A5EI80_BRASB Length = 335 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 143 LLSLGVNHV----NHLLLSYSKQSLIS--RCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 L +LGV+ H S++ + ++ R + L EPG T VAR + IS +H Sbjct: 203 LAALGVSRSFRREAHATTSFADATTLALRRAIHERLREPG--LTVATVARMVGISERYVH 260 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQT---TVKPISEIARENGYKCPSRFTERFHNRFN 253 + LA G SF ++ + RL+ A ++ + I IA + G+ S FT RF RF Sbjct: 261 KLLARAGTSFSELVMERRLDGAARDLRDPCCAARDIGSIAFDWGFSDLSHFTRRFKQRFG 320 Query: 254 ITPREIR 260 + PR+ R Sbjct: 321 MRPRDWR 327 >UniRef50_Q2G532 Transcriptional regulator, AraC family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G532_NOVAD Length = 342 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVK-PISEIARENGYKCP 241 ++AR + +S T+ R+LA EG SFQ +LD+ R+ A+ +T I++IA GY Sbjct: 256 RIAREIGMSSRTMRRKLAEEGSSFQQVLDECRMRQAVFEFRTRPDLSIAQIALRLGYAEH 315 Query: 242 SRFTERFHNRFNITPREIR 260 S FT FH I+P R Sbjct: 316 SNFTRAFHRWSGISPHAWR 334 >UniRef50_B1KIM8 Transcriptional regulator, AraC family n=5 Tax=Shewanella RepID=B1KIM8_SHEWM Length = 367 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%) Query: 156 LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 LS+ ++S + L+ EP TA KVA+ IS +L R L E SF+S+L D R Sbjct: 251 LSWREKSYQAIHAMLVTGEP----TAAKVAQLYNISERSLSRYLKKEETSFRSLLQDKRK 306 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 A + + ++++A + GY C S FT FH + I+P E R Sbjct: 307 ELAHYYLGQSELSVTQLADKLGYTCLSNFTRAFHLWYGISPSEYR 351 >UniRef50_C7HUW6 Putative uncharacterized protein n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUW6_9FIRM Length = 420 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRL 215 +Y Q I++ + S K T +++A +IS S+L + L G +F +L+ +R Sbjct: 187 NYEHQIQINQILRYMYSHMSEKLTLDRLASTFFISKSSLTKYLEENIGFTFSELLNRIRF 246 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + A+ + + K ++EIA+ GY S FT+ F N I P E R Sbjct: 247 SKAIDLLMFSEKSLNEIAKRVGYTDSSHFTKIFENTEGINPGEFR 291 >UniRef50_Q1ZTS4 Putative transcriptional regulator (AraC family) (AdiY) n=1 Tax=Photobacterium angustum S14 RepID=Q1ZTS4_PHOAS Length = 353 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 1/111 (0%) Query: 150 HVNHLLLSYSKQSLISRCYNLLLSEPGTKW-TANKVARYLYISVSTLHRRLASEGVSFQS 208 + H L++Y + ++I + Y L S P + + N +A + IS TL+RRLA S++ Sbjct: 225 QLKHQLVNYQQNNVIHQVYRALRSLPDLEAASGNHIASLMDISFRTLNRRLACLSTSYRG 284 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 +L++ +L ALS + + +++IA++ G+ S F+ F + P ++ Sbjct: 285 VLENYKLEMALSLLDNSELGLADIAQQLGFSDLSTFSRAFKRWTGLCPSQL 335 >UniRef50_Q0KJP1 Helix-turn-helix, AraC type transcriptonal regulator n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJP1_9SPHN Length = 350 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 85/219 (38%), Gaps = 28/219 (12%) Query: 58 LFPCGYEFYIENYPEAGLYLAEMLYL----PIDLIESFQKLYTVTDQIRNKTSFFLPQNP 113 LF Y F P A +Y M YL P +++S KL + + K F Sbjct: 128 LFTQDYRFGGGGAP-ALIYTLRM-YLDRRFPTAILQSLPKLVRLPGFVTRKAPFV----- 180 Query: 114 ELIYCWEQLKTSVS----RGF-STKIQEHLAMGVLLSLGVNHVNHLLLSYS-----KQSL 163 EQL + + +GF I LA GVL + +H+ L Sbjct: 181 ------EQLTSLIGEHGKQGFMGLAIATRLAEGVLTACIKDHLEATFQIVDVGRGLNDPL 234 Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAI 222 +S + +PG WT +A +S S R G + +R+ A+ + Sbjct: 235 LSGMLRAIQEDPGRDWTILNLAERAKMSRSAFINRFTRVTGQKPNEFVTSMRMMQAMELL 294 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + + PI+ IA E GY + FT FH F +TP +R+ Sbjct: 295 EKSGTPIAHIATEMGYSSEASFTRAFHRWFKVTPGTVRR 333 >UniRef50_C8PSP6 Transcriptional regulator, AraC family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSP6_9SPIO Length = 323 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 5/168 (2%) Query: 102 RNKTSFFLPQNPELIYCWEQL----KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS 157 +N T F PEL + + ++ + KIQE +L G++ + Sbjct: 154 KNGTLFLKRATPELDHIFHEMYHVPEEIAVPYLKVKIQELFLYLSILKSGIDFTDREYAQ 213 Query: 158 YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLN 216 + + +I R + ++ ++ +++ +I +T+ S G + + RL Sbjct: 214 KTNREIIKRLHQFVIKNSNKNYSYAQLSAVFHIKTTTMKTCYKSVYGTTIHETVKKARLQ 273 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 A+ ++ + I+EIA E GY ++F+E F +N+ P E +K R Sbjct: 274 KAIDLLKNSSATITEIALEIGYSSHAKFSEAFKQTYNLRPSEYKKIIR 321 >UniRef50_A9GK31 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK31_SORC5 Length = 349 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 40/74 (54%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VAR L + TL RRL + G +F+S+L VR + A+ A+ + PI EIA GY S Sbjct: 265 RVARTLGLGARTLQRRLIASGATFRSLLATVRRDRAMHALVHSDLPIGEIATRLGYGSLS 324 Query: 243 RFTERFHNRFNITP 256 F F + + P Sbjct: 325 EFHRAFRSWVGVGP 338 >UniRef50_Q28K70 Transcriptional regulator, AraC family n=1 Tax=Jannaschia sp. CCS1 RepID=Q28K70_JANSC Length = 332 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 9/105 (8%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 QS + R + S+P + A +AR ISV +H+ G + ++D+RL A Sbjct: 224 QSYVQRHF----SQPDLR--AEHLARQFGISVRRVHQLFEPTGHTVSEFINDLRLARAAD 277 Query: 221 AIQTTV---KPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + + ISEIA + GY PS FT RF R+ +PR R A Sbjct: 278 CLGDAALARRTISEIAWQVGYSDPSYFTRRFKRRYGCSPRAYRAA 322 >UniRef50_A9ATI3 AraC family transcriptional regulator n=26 Tax=Betaproteobacteria RepID=A9ATI3_BURM1 Length = 348 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 52/105 (49%) Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 ++S+Q + R L + A +L+ SV TL R LA+EG +FQ++ D++R + Sbjct: 242 TFSEQRVCHRVRQYLSEALPDLPVIEQAAEHLHCSVRTLSRHLAAEGTTFQALKDELRRD 301 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 A+ + T I+ I + G+ PS F F + TP R+ Sbjct: 302 IAIQRLTDTQDTIAAIGADIGFDDPSAFHRAFRHWTGSTPGTYRR 346 >UniRef50_UPI000197C3AF transcriptional activator RhaS n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C3AF Length = 269 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 6/144 (4%) Query: 123 KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLIS--RCYNLLLSEPGTKWT 180 K + S G E L + ++++L NH+ ++Q +I R N+ E W Sbjct: 128 KLNESDGSDLAYTESLFLQLIVNLQDGRYNHIGEGNNEQRIIQMLRWLNMNFIE-DVDW- 185 Query: 181 ANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 + +S+ T HR + + G+S Q+ L +RL+ A I+ + K I++IA E+G+ Sbjct: 186 -GHLTTQFSVSLRTFHRYMKNNLGISPQNYLIKLRLSEAYYQIRFSDKTITDIALESGFN 244 Query: 240 CPSRFTERFHNRFNITPREIRKAS 263 + F+ F + +N TPR++R S Sbjct: 245 DSAYFSTCFKSEYNFTPRDLRHCS 268 >UniRef50_A4BGF4 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BGF4_9GAMM Length = 342 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANK-VARYLYISVSTLHRRLASEGVSFQSIL 210 +LL+ + Q +S L SE G T + VA +L +S +TL R+L EG SFQ + Sbjct: 218 GNLLVQFQPQDSVSASVLSLFSEHGEALTDQQWVAEHLAVSGATLRRQLKREGTSFQQLK 277 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 D R A ++ + + +I+ + GY S F+ F +PR +R Sbjct: 278 DQWRRKEAYRLLKHSTLTLPDISTQLGYSELSAFSRAFKTWTGRSPRSVRD 328 >UniRef50_D1Y5U1 Putative two-component response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5U1_9BACT Length = 284 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%) Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 ++ +GF+ +++ G LS V + +++S + R + EPGT + + Sbjct: 144 ALEQGFTEALKKLAEHGNFLSASVEGTDD-----AERSPVRRAVAFIREEPGTA-SLEET 197 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 A+++ +S L R EGV F +L D R+ A + + + ARE+GY + F Sbjct: 198 AKHVGVSPGHLSRLFREEGVRFMDVLKDARMQRARGLLLAGAS-VRQAARESGYGNVAYF 256 Query: 245 TERFHNRFNITPREIRK 261 F F + P +R+ Sbjct: 257 GLAFKKVFGVAPSTLRR 273 >UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=Acinetobacter RepID=A3M2M8_ACIBT Length = 335 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Query: 151 VNHLLLSYSKQSLISRCYNLLLSEPGT-KWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 +N L + K+++++R L+ + T + VA+ L +S+ +L R+L++E S+ + Sbjct: 218 INRYLARFDKENILARVKVKLIEKLSTGDFQQQDVAKSLGLSIRSLQRKLSAENTSYSEL 277 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 LD R ALS I+ + I+EIA G+ S FT F +++P Sbjct: 278 LDQTRHELALSYIKNSSHNITEIAYILGFTDVSSFTRAFRRWTDLSP 324 >UniRef50_C2LMQ1 Virulence regulon transcriptional activator VirF n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LMQ1_PROMI Length = 263 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 17/218 (7%) Query: 33 CRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYI---ENYPEAGLYLAEMLYLPIDLIE 89 C I K + ++ +DN+ I+ I +N ++L+ + + + I Sbjct: 28 CEISITKDNVKYQ-----IDNDSIVFIKKNSALDIILGKNKMPEFIFLSHEVMMEVLKIT 82 Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS----VSRGFSTKIQEHLAMGVLLS 145 K VT Q NK SF N E I + +LK V T + + L + LL Sbjct: 83 INNKKEEVT-QDNNKDSFIKQANHEDILFFNRLKNKFNDEVITNNKTSLSQILKIAYLL- 140 Query: 146 LGVNHVNHLLLSYSKQSLIS-RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGV 204 L + N +L SK L S + ++++S+ W+ +++ L+IS S+L ++L +E Sbjct: 141 LNFDIPNLIL--KSKPELTSVKVKDIIISDLQHSWSLKEISSKLFISESSLRKKLEAEKT 198 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +F ++L VR+ +A++ + TT I +I+ +GYK S Sbjct: 199 NFMTLLTTVRMAHAMNLLATTNLTIGQISSLSGYKNTS 236 >UniRef50_B7RWU1 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RWU1_9GAMM Length = 348 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%) Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 K+ L++ N LL G + ++A+ +S TL R+L + GV+FQS+LD+ R + Sbjct: 245 KRGLVAAVRNRLLEVDGRVPSLEQLAQQFDVSARTLRRQLRAAGVTFQSLLDESRYRESK 304 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + +T + I R GY F F TP E RKA Sbjct: 305 RYLASTDMTVEAIGRRLGYADARSFRTAFRRWSGQTPLEHRKA 347 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 56/112 (50%) Query: 154 LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 LLL+ + ++ +R ++ + +WT ++A L +S S L ++L EG S+ +L + Sbjct: 134 LLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTEC 193 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 R+ AL I I +A GY S F F N + +TP E ++ S + Sbjct: 194 RMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQ 245 >UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, AraC family protein n=8 Tax=Acinetobacter RepID=B7GX20_ACIB3 Length = 356 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 49/91 (53%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 +LL G +A ++A L++S TLHRRLA +++Q +LD+ R A ++ T + Sbjct: 261 ILLDGTGLFPSAQEMAERLHMSKRTLHRRLAGFDLTYQELLDETRRRLADEYLRETTLTV 320 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIR 260 EIA G+ S F + + + I+P E R Sbjct: 321 DEIAERIGFSDTSNFRKAYRHWTGISPNEYR 351 >UniRef50_B6B356 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B356_9RHOB Length = 326 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 2/113 (1%) Query: 152 NHLLLSYS-KQSLISRCYNLLLSEPGTKW-TANKVARYLYISVSTLHRRLASEGVSFQSI 209 L+ Y + ++S +L + T W T ++A+ L +S +TL R+L +G S++S+ Sbjct: 214 GSFLIGYKFDEGVVSMVMKVLKATELTDWPTLPELAKQLDMSAATLRRQLLQQGHSYRSL 273 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 D++ A + ++ T P+SEI+ GY PS F F N TP RK Sbjct: 274 KADLKRERAQTLLRETHLPVSEISHRLGYAEPSAFFRAFRLWTNQTPEAWRKG 326 >UniRef50_Q2SDE8 AraC-type DNA-binding domain-containing protein n=3 Tax=Gammaproteobacteria RepID=Q2SDE8_HAHCH Length = 347 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 42/80 (52%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 + VA L ++ TL RRL+ S+Q +LD+VRL A + + PI +IAR+ G+ Sbjct: 262 DMVAERLGVTARTLQRRLSEYHSSYQLLLDEVRLEMAQDMLTHSDVPIPDIARQLGFAEV 321 Query: 242 SRFTERFHNRFNITPREIRK 261 F F N +TP E R Sbjct: 322 RSFHRSFKNHTGVTPGEFRD 341 >UniRef50_P72171 Ornithine utilization regulator n=7 Tax=Pseudomonas aeruginosa group RepID=ORUR_PSEAE Length = 339 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 44/88 (50%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 PG + AR L+ S +L R L+S G ++Q +LDDVR AL + TT P+ EIA Sbjct: 251 PGDFPDLEQAARELHTSGRSLRRHLSSLGTTYQQVLDDVRKRLALQYLTTTQLPLYEIAL 310 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKA 262 G+ S F F P + R+A Sbjct: 311 LLGFNDSSNFRRAFRKWTGKLPSDYREA 338 >UniRef50_A3WY00 Transcriptional regulator, AraC family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY00_9BRAD Length = 345 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 ++A+YL +S +L RRL EG SF+ + D+++ A+ I+ T + EIA G+ + Sbjct: 260 RIAKYLNMSERSLRRRLQEEGTSFRQLADELKAQIAIKYIRDTDLSVEEIAFALGFGDAA 319 Query: 243 RFTERFHNRFNITPREIRKAS 263 F F N TP++ RK+ Sbjct: 320 SFRHAFRRWTNATPQDYRKSG 340 >UniRef50_A1U5F4 Transcriptional regulator, AraC family n=3 Tax=Marinobacter RepID=A1U5F4_MARAV Length = 118 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 1/103 (0%) Query: 159 SKQSLISRCYNLL-LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 SK+SL R L+ + K VA L +S TLH++L EG++F ++L+ VR Sbjct: 11 SKRSLSMRVSKLIRIQLERGKVGVEAVAGQLNMSRYTLHKKLRQEGLTFAALLEQVRREQ 70 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 A++ ++ KP+ EIA + G+ S F+ F P E R Sbjct: 71 AITYMKDKSKPLVEIAEQLGFSELSAFSRAFKRWMGTPPAEYR 113 >UniRef50_B6RA51 Transcriptional regulator DarR n=1 Tax=Pseudovibrio sp. JE062 RepID=B6RA51_9RHOB Length = 306 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Query: 154 LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDD 212 L L + QS I++ ++LSEP WT K+A+ +S TLHRRL + G + ++ Sbjct: 196 LSLQAAGQSNIAKLSEIILSEPEADWTIEKMAQSAGVSTRTLHRRLKEDIGATPAQFVER 255 Query: 213 VRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 +RL+ A +A+ I + A +G+ F F ITP E Sbjct: 256 LRLDLARTAL-LKRSSIKQAAHLSGFGHIQNLRRAFQRNFGITPSE 300 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 177 TKWTANKVARYLYISVSTLHRRL-ASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 T ++ +A L IS L+R++ A GVS ++ RLN A + +Q + ISEIA E Sbjct: 821 TGFSVEDLAARLKISRVQLYRKVKALLGVSISEYINSQRLNKAKNLLQDSDMNISEIAYE 880 Query: 236 NGYKCPSRFTERFHNRFNITPREIR 260 GY P F+ F + I+P+E++ Sbjct: 881 VGYSSPGYFSTSFKKEYGISPKELK 905 >UniRef50_B8KM84 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KM84_9GAMM Length = 117 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 43/83 (51%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P T + A Y+ ISV TL RRL G+++ ++D VR A ++ + I+EIA Sbjct: 27 PAGYPTVEQGACYMGISVRTLQRRLNRNGLTYSELVDRVRHKEACRLLEAKDRSIAEIAT 86 Query: 235 ENGYKCPSRFTERFHNRFNITPR 257 + GY PS F+ F +PR Sbjct: 87 QLGYSDPSHFSRAFRRWERRSPR 109 >UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=Pseudomonas RepID=A4Y0K0_PSEMY Length = 337 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 49/91 (53%) Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P + +A ++A+ L++S+ +L R LA EG S++++L D R AL ++ ISEIA Sbjct: 246 PDGEPSAERIAQALHLSLRSLQRHLAEEGTSYEALLGDTRHALALRHMRDPRCSISEIAY 305 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKASRE 265 G+ S F F TP + R SR+ Sbjct: 306 LLGFSDSSSFGRAFKRWTGQTPSQYRDGSRK 336 >UniRef50_A7IJH1 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IJH1_XANP2 Length = 376 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%) Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQ 223 I LLL+ G + T +VAR+ ++S TL RRL +EG S +++ R A++ + Sbjct: 274 IRAVLPLLLAR-GGEPTLAEVARFAFMSPRTLQRRLTAEGTSLSRLIEQERAARAIALLT 332 Query: 224 TTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + + E+A E GY + FT + P +RK+ Sbjct: 333 ASTNRVQEVATEMGYGSGASFTRAVRRWTSAPPTRLRKS 371 >UniRef50_P0A2T2 Virulence regulon transcriptional activator virF n=9 Tax=Enterobacteriaceae RepID=VIRF_SHIDY Length = 262 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 48/81 (59%) Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 +W + ++ L +S + +RL SE ++FQ IL D+R+++A + + I++++R G Sbjct: 174 RWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLLLNSQSYINDVSRLIG 233 Query: 238 YKCPSRFTERFHNRFNITPRE 258 PS F +F+ + ITP++ Sbjct: 234 ISSPSYFIRKFNEYYGITPKK 254 >UniRef50_Q5QTS9 Predicted regulatory protein containing AraC-type DNA-binding domain and DSBH domain n=1 Tax=Idiomarina loihiensis RepID=Q5QTS9_IDILO Length = 307 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRR-LASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 +++EPG WT ++A Y+SVS R + GV+ + ++D +RL A + ++ + Sbjct: 212 VINEPGADWTVERLAELAYLSVSAFAERCIKKTGVTPKKLVDQLRLQRARIMLSSSQLSM 271 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIR 260 IA + GY+ + F+ F ++P E R Sbjct: 272 DLIAEQLGYQSATAFSRFFKKYAGLSPAEYR 302 >UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZUP8_PHOAS Length = 292 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 116/265 (43%), Gaps = 33/265 (12%) Query: 17 HKHHEIHRVKPLMPALCRIRQGK-KVINWETHTLTVDNNQIILFPCGYEFYIE--NYPEA 73 H H E V L R QGK +V ++E +++N+++L G E N E Sbjct: 38 HAHQEFELV------LHRNFQGKSRVAHFEGQ---IEHNELLLIGPGVAHSFESINSDEK 88 Query: 74 GLYLAEMLYLP----IDLIESFQKLYTVTDQIR--NKTSFFLPQNPELIYCWEQLKTSVS 127 A +++ +LI S +L T+ IR NK F Q E +Y + L + Sbjct: 89 NPCEAHVIWFSKEWIANLIYSCAELRTLMPIIRDANKGVRFSTQTAEKVY--QHLNSF-- 144 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ----------SLISRCYNLLLSEPGT 177 + Q + + +L L + + LLSY++ S I++ + + Sbjct: 145 DDLTPIGQLAVLIQILDELSADQSHTTLLSYAQSEEKEKPNNDFSKIAQVCKYIDKHYSS 204 Query: 178 KWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 T K+A Y+Y+S +T+HR S+ S L +RLN+A + + TT++PIS IA Sbjct: 205 DITLKKLADYMYVSENTVHRWFIQHFNESYISYLTKLRLNHASNLLITTLQPISLIAESV 264 Query: 237 GYKCPSRFTERFHNRFNITPREIRK 261 GY S F F I+P RK Sbjct: 265 GYTNRSNFNRSFKKYKGISPSLYRK 289 >UniRef50_C9Y7W6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7W6_9BURK Length = 335 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 160 KQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 + S+ R +LL P G+ +A +S TL RRLA EG SFQ +LD + + Sbjct: 225 QSSMAQRVASLLGHTPEGSYPRLPDIAAQCEVSERTLMRRLALEGTSFQQLLDAHQQSRT 284 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 L +Q T + +IA GY S F+ F TP +RK + Sbjct: 285 LWLLQHTSDSVEDIAGRLGYTDTSNFSRTVKRWFGYTPSALRKGT 329 >UniRef50_Q16DG7 Transcriptional regulator, AraC family, putative n=9 Tax=Rhodobacteraceae RepID=Q16DG7_ROSDO Length = 381 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 6/103 (5%) Query: 161 QSLISRCYNLLLSEPGTKWTAN--KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 QSL R Y LS+ G TAN AR L+++ TL R+L ++G SFQ I D +R + A Sbjct: 277 QSLRVRSY---LSQAGWD-TANLTGAARALHLTPRTLIRKLEADGTSFQMIKDALRRDIA 332 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + +QT I IA E G+ + F + F TP R+ Sbjct: 333 IRHLQTGQHSIEAIAHEVGFSSAANFHKAFQRWTGNTPSSYRR 375 >UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS family protein n=3 Tax=Vibrionaceae RepID=Q1ZVW8_PHOAS Length = 292 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 4/124 (3%) Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 LLS V NH + + I R + T VA ++ S ST+HR Sbjct: 167 TLLSHNVESKNH---DHCNKEKIERLCAFIDQHYAEPLTLEYVANFICTSESTIHRLFEQ 223 Query: 202 E-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +F L +RLN+A + ++ +PIS +A + GY+ + F +F N+TPRE R Sbjct: 224 HFNETFIQYLKKLRLNHASELLVSSSEPISHVAEQVGYRNQANFNRQFKQYKNMTPREYR 283 Query: 261 KASR 264 + + Sbjct: 284 RTYK 287 >UniRef50_Q0G2J4 Transcriptional regulator, AraC family protein n=3 Tax=Alphaproteobacteria RepID=Q0G2J4_9RHIZ Length = 360 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 42/81 (51%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +ARYL +S + HRRL+ GVSF ++ ++ R + A+ ++ ++EIA G+ Sbjct: 276 KDIARYLGVSARSFHRRLSEHGVSFHTLTEETRRDLAVGLLRDKRHSLAEIAFLTGFAEQ 335 Query: 242 SRFTERFHNRFNITPREIRKA 262 S FT F TP R+ Sbjct: 336 SSFTRAFKRWVGQTPASYRRG 356 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 36/251 (14%) Query: 29 MPALCRIRQGKKVINWE--THTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPID 86 MP +C KK IN++ L ++ ++L ++++Y + YL I+ Sbjct: 7 MPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDK--------YLEIE 58 Query: 87 LIESFQKLYTVTDQIRNKTSF-------FLPQNPELI---YCWEQLKTSVSRGFSTK--I 134 L E D +RN S+ FL P ++ + + L S+ +++ I Sbjct: 59 LNE---------DTVRNYLSYYNHCEKQFLETPPCILRKSFAYPDLLISMIDNINSQNHI 109 Query: 135 QEHLAMGVLLSL--GVNHVNHL--LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 + SL + V +L L+ + + ++ LS+ W +A YLY+ Sbjct: 110 HPDFKDAIFFSLLSVFSDVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYM 169 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S S + ++L E SF IL D R++ A+ ++ PI ++ G+ S F F Sbjct: 170 SESLIKKKLLLENTSFSKILLDTRMSLAIKLLKQN-HPIKYVSEMCGFSSTSYFVCLFRQ 228 Query: 251 RFNITPREIRK 261 + TPR+ K Sbjct: 229 YYECTPRKYLK 239 >UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUA5_9GAMM Length = 354 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 161 QSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 ++L ++ +L+S P TA+ A L +S TLHRRL +EG SFQ + DD+R A+ Sbjct: 243 KTLSAKVEQILVSAGPERLPTASGAASQLNMSPRTLHRRLTAEGTSFQQLKDDLRRELAV 302 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + I IA G++ S F F I+P + R+ Sbjct: 303 QYMHRDELSIDAIAAVMGFQDNSAFYRSFKKWTGISPGKFRE 344 >UniRef50_Q5WK40 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WK40_BACSK Length = 407 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 1/104 (0%) Query: 158 YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLN 216 + K+ L R Y + + + + +VA +L+++ + L +R E G F + +R++ Sbjct: 302 HKKEQLAVRVYEYVEAHFFEQPSLQEVADHLFLNAAYLSKRFKEETGEKFSDYIHRLRMD 361 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 A+ + T +S+IA++ GYK S F + F F++TP+E R Sbjct: 362 RAVELLAETNMKVSQIAKKLGYKDASYFIKVFKREFHMTPQEFR 405 >UniRef50_Q4KC58 Transcriptional regulator, AraC family n=14 Tax=Pseudomonas RepID=Q4KC58_PSEF5 Length = 397 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 1/111 (0%) Query: 151 VNHLLLSYSKQSLISRCYNLLLSEPGTKWT-ANKVARYLYISVSTLHRRLASEGVSFQSI 209 N L+ +SL SR L PG +W + +A+ L +S STL RRLA EG S+Q++ Sbjct: 277 ANILVKYRDPESLASRIKQQLRQLPGEQWPESESLAQSLCMSASTLRRRLAEEGQSYQAL 336 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 D VR A+ + +EIA G+ S F + F P R Sbjct: 337 KDSVRKELAIVWLAEPQISFAEIAGRLGFADTSSFYKAFRKWSGSNPGHYR 387 >UniRef50_A6B243 Transcriptional activator of virulence loci n=4 Tax=Vibrio parahaemolyticus RepID=A6B243_VIBPA Length = 247 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 51/98 (52%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 S+ R + L+ + +WTA ++++ L +S +TL RR++ E + ++ R+N A Sbjct: 132 DSISERIHRLISKQIQHRWTAEEISKNLNMSKATLMRRISQEKTTLSDLILSARMNKAAY 191 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 + PI ++A G+ S F ++F + +P++ Sbjct: 192 LLLKKKHPIKKVAHLTGFSSASYFCKKFKETYGNSPKQ 229 >UniRef50_C2AR01 DNA-binding domain-containing protein, AraC-type n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AR01_TSUPA Length = 289 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%) Query: 156 LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVR 214 L+ + I + + P +WT ++AR +S S R GV+ + D R Sbjct: 179 LTAAMDQHIGPALTAIHAHPERQWTVAELARIALLSRSAFAARFTRLLGVAPAGYVADRR 238 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 L+ A ++ + P+ ++ R GY + F+ F RF + PR R+A+ Sbjct: 239 LDRAAELLRDSALPVGDVGRTVGYGSEAGFSRAFARRFGVPPRAWRRAT 287 >UniRef50_B8HXD6 Transcriptional regulator, AraC family n=3 Tax=Cyanothece sp. PCC 7425 RepID=B8HXD6_CYAP4 Length = 338 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA +SV + R LA+EG+++ +++ VR + A+ ++ I EIA E GY+ P+ Sbjct: 256 VAEIAGMSVRSFQRYLAAEGLTYIRMVEQVRFDAAVDYLEDPDIKIIEIALELGYQDPAN 315 Query: 244 FTERFHNRFNITPREIRK 261 FT F I+P+E R+ Sbjct: 316 FTRAFKRWTGISPQEYRE 333 >UniRef50_UPI0001B4CF35 putative AraC family regulatory protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4CF35 Length = 357 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +VA L +S +TL RRL E SFQ + D VR + A+ +++ T +PI E+A G+ Sbjct: 271 REVAARLAVSPATLRRRLDEEDTSFQRLKDQVRRDAAIGSLRETGEPIEELAVRLGFSEA 330 Query: 242 SRFTERFHNRFNITPREIR 260 + F F +TP R Sbjct: 331 AAFHRAFRRWTGMTPGAYR 349 >UniRef50_A3K7B6 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=A3K7B6_9RHOB Length = 343 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T ++VA L++ TL RRLA+EG S ++++DD+R A + + +A+ GY Sbjct: 257 TLDRVAAALHMGPRTLQRRLAAEGTSLRALVDDIRYRRAARLLALPGARVGHVAQALGYT 316 Query: 240 CPSRFTERFHNRFNITPREIRKA 262 P+ F + TP E R++ Sbjct: 317 DPTAFWRAWRGWTGETPSETRRS 339 >UniRef50_UPI00016A75A2 transcriptional regulator, AraC family protein n=3 Tax=pseudomallei group RepID=UPI00016A75A2 Length = 336 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 2/107 (1%) Query: 155 LLSYSKQSLISRC-YNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 LL+ L+ R L+LSE G A ++A L++S TL RRL G S++ +L+ Sbjct: 228 LLNLDASDLVDRVRAGLMLSEDGYPSLA-RLASSLFLSERTLKRRLREHGTSYREMLEKA 286 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 R +A + ++ T +++++ + GY+ P FT F I P R Sbjct: 287 RYRDACALLRETDLSLADVSAKLGYQNPPTFTRAFRRWSGIAPSRYR 333 >UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF5_9BURK Length = 342 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 145 SLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 ++ + LLL + S +R LL S PG WT +VA + ++S TL R L E Sbjct: 220 AMALARCEQLLLEQRRPSNWAARVTELLRSNPGQIWTCEQVASHFHLSSRTLMRYLRDEQ 279 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S+Q++ D A ++ + + +A GY+ S F F F ++P+ + S Sbjct: 280 TSYQTLRDSELARQAKLSLLVSNNTVESVALSLGYQEVSNFRRAFKRWFGMSPQAFIEQS 339 Query: 264 R 264 R Sbjct: 340 R 340 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 9/132 (6%) Query: 134 IQEHLAMGVLLSLGVNHV---NHLLLSYSKQSLISRCYNLLLSEPGTKW-TANKVARYLY 189 +Q+H ++ LS H+ + L LS+++ R N+L E +A +++ L Sbjct: 217 VQDHESLMAFLSTAPYHLVTQDPLKLSFTE-----RVRNILKREVNRSIPSAEQLSEMLN 271 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +SV+T+ R+L+ EG S+Q + D+ R+ A+ + ++IA + G+ PS F F Sbjct: 272 MSVTTMRRQLSKEGTSYQKLKDECRMEVAIHYLACAELSNADIAEKLGFDEPSAFFRSFK 331 Query: 250 NRFNITPREIRK 261 TP E R+ Sbjct: 332 KWTGQTPGEYRQ 343 >UniRef50_A9GMV5 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GMV5_SORC5 Length = 346 Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%) Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLH 196 LA + +LG+ H +L +++ +++R L + P + T + VAR + S +L Sbjct: 220 LAQQLERALGLPASEHRVLPRAEEDVLARVRRELRTAIPQGEATLDHVARAVGQSARSLQ 279 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL+ G SFQ+I+DD R A + ++E A G+ + FT F R+N P Sbjct: 280 RRLSERGTSFQAIVDDARRAMAEELLAAHRATVTEAAFAVGFTDVAAFTRAF-KRWNGVP 338 >UniRef50_A6F8A8 Transcriptional regulator, AraC family n=1 Tax=Moritella sp. PE36 RepID=A6F8A8_9GAMM Length = 345 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%) Query: 173 SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEI 232 SEP T +++A L +SV ++ R L EG++F+ IL R A+ + T PI I Sbjct: 244 SEP----TLDEIAAMLNMSVRSISRSLKEEGLTFRDILKQKRQELAVHYLTKTEDPILTI 299 Query: 233 ARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 + GYK FT F F +P R+ +RE Sbjct: 300 SENLGYKNMGNFTRAFQTWFAQSPSHYREKNRE 332 >UniRef50_Q5R005 AraC-type DNA-binding domain n=1 Tax=Idiomarina loihiensis RepID=Q5R005_IDILO Length = 192 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 46/88 (52%) Query: 174 EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 E G + ++A + IS+S+ R LAS G SFQ I D VRL+ L+ +Q E+A Sbjct: 93 ETGHDASLTELAAEIGISLSSCKRLLASHGYSFQQIYDLVRLHKLLNLLQKHPYSNVELA 152 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRK 261 ++ GY P+ F I P E+R+ Sbjct: 153 QKLGYSNPNNFRRACKRWLGIVPEELRQ 180 >UniRef50_A0AX39 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=A0AX39_BURCH Length = 364 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 162 SLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 S+ R + LL P + + ++R L +SV TL RRL EG SFQ LD +R + A Sbjct: 248 SMAERVRSTLLETLPAGEVSMQVISRKLAVSVRTLQRRLQDEGTSFQQTLDTLRESLAYH 307 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + T +EI+ G+ + F FH+ TP ++R Sbjct: 308 YLGNTTMSSAEISFLLGFDDSNSFARAFHSWTGKTPHKVR 347 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%) Query: 163 LISRCYNLLLSEPGTKWTA-NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 L R +LL T+ T+ KVA+ L++S +L R L+ EG +F+ ++D+VR A Sbjct: 258 LTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGTNFRELVDEVRQEIAERY 317 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 ++++ IS+IA G+ F+ F F+ +P R++ +E Sbjct: 318 LKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPETYRQSLQE 361 >UniRef50_D0LUM0 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUM0_HALO1 Length = 350 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 41/88 (46%) Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 ++ A +AR L +SV +L RRL GVS Q++LD+ R AL + I EIA G Sbjct: 258 EYGAEHLARRLGMSVRSLQRRLEERGVSVQALLDEARTAAALELLADERLSIDEIAERVG 317 Query: 238 YKCPSRFTERFHNRFNITPREIRKASRE 265 Y F F TP R R+ Sbjct: 318 YASARSFRRAFKRWTGETPAAARGRRRD 345 >UniRef50_B4CYE8 Transcriptional regulator, AraC family n=3 Tax=Verrucomicrobia RepID=B4CYE8_9BACT Length = 233 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 176 GTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 G T ++AR +S LHR L + G++ +L R+ +A A+ T PISEIA Sbjct: 143 GRNLTTAELARAAGVSERHLHRLLRTTLGLTPHELLLRTRIQSAAEALVRTSTPISEIAI 202 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++G+ S FT++F R +TPR+ R +R Sbjct: 203 QHGFCDQSAFTQQFRKRTGVTPRQFRVRNR 232 >UniRef50_Q0VTC8 Transcriptional regulator, AraC family n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VTC8_ALCBS Length = 324 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 53/100 (53%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 +L+ + LL+ + T ++A +L+++ TL RRL G+ FQS+L++ R ++ Sbjct: 222 TLLRQVRELLVLDAEGYPTPEQLAEHLHLTARTLRRRLQERGLGFQSLLEEARRRDSCHL 281 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + + I I++ G+ P+ FT F +TP + R+ Sbjct: 282 LAASDMEIQRISQLLGFADPANFTRAFKVSMGMTPSQWRE 321 >UniRef50_D0WIH5 Transcriptional regulator, AraC family n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIH5_9ACTN Length = 813 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 180 TANKVARYLYISVSTLHRRLA-SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 T + +A LY+S L R S GV+F + ++RL AL+ + T KPI++I+ +NG+ Sbjct: 188 TLDALAEELYLSKGYLSRFFTKSFGVNFNHYVRELRLKRALNELLYTDKPITQISFDNGF 247 Query: 239 KCPSRFTERFHNRFNITPREIRKASR 264 S F F ++ +P E+R R Sbjct: 248 SGSSYFNRAFKKKYGASPSEMRAEVR 273 >UniRef50_P05052 HTH-type transcriptional regulator appY n=6 Tax=Escherichia coli RepID=APPY_ECOLI Length = 249 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 +W +A +Y S S + +RL EG SF IL D R+ A I + I+ +A++ G Sbjct: 152 QWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCG 211 Query: 238 YKCPSRFTERFHNRFNITP 256 Y S F F + + +TP Sbjct: 212 YNSTSYFICAFKDYYGVTP 230 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 47/104 (45%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 Q + LL + PG + A L +S +L RRL+ EG +++ ++ D R+ A S Sbjct: 238 QGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSLRRRLSEEGTTYKEVVLDFRMELASS 297 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++ I E+A GY S F F + TP E R + Sbjct: 298 YLRGREMTIQEVAFLAGYADASNFHRTFSRYYGATPGEFRAGEQ 341 >UniRef50_A9D8L4 Transcriptional regulator, AraC family protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D8L4_9RHIZ Length = 311 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 3/128 (2%) Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTL 195 H+ G++ L N + + Q L++ N ++ G + + AR+ IS L Sbjct: 184 HVLPGLMQMLSFGLSNARRNAVADQHLVT-VQNFVVHNMGNSDLSPGLTARHFRISTRHL 242 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAI-QTTVKPISEIARENGYKCPSRFTERFHNRFNI 254 H+ A +G++F + L D RL I + +P+S +A +G++ S F+ F +F Sbjct: 243 HKLFARDGITFGTFLLDARLQACRKRILASPDEPVSLVAFAHGFRSQSHFSRAFRQKFGC 302 Query: 255 TPREIRKA 262 +P ++RK+ Sbjct: 303 SPNQLRKS 310 >UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WD12_ACTMD Length = 350 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 172 LSEPGT-KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 L+ PG ++VAR L +S TL RRLA G S++ +LD+VR A ++ + Sbjct: 249 LAGPGALDCGMDRVARELSVSTRTLRRRLAGAGTSYRELLDEVREALAERLLRGGALSVE 308 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 E AR GY S F F +TP R + Sbjct: 309 EAARRLGYAEASSFIHAFKRWKGVTPATWRGGDQ 342 >UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VH68_PSEU5 Length = 346 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 20/181 (11%) Query: 83 LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS--TKIQEHLAM 140 +P + E ++ L+ R SF +P L++ +L S++ ++ + + + Sbjct: 182 MPREGAEPYETLF------RAPVSFGVPHG-FLVFDKAELLQSLAGSCPELAQVSDTIVI 234 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 G L L N V ++ KQ +I P T +KVA L +S +TL +L+ Sbjct: 235 GYLARLDKNDV----ITSVKQKIIEFL-------PDGDCTRDKVANALCMSPTTLQLKLS 283 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 FQ +LD+ R + A S ++ +P++EI G+ S FT F ++P R Sbjct: 284 QRSTHFQQLLDETRKDLACSYLRQVTRPVTEITFLLGFSDTSNFTRAFKRWTGLSPTNFR 343 Query: 261 K 261 + Sbjct: 344 Q 344 >UniRef50_B8IE97 Transcriptional regulator, AraC family n=2 Tax=Methylobacterium RepID=B8IE97_METNO Length = 380 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 +L P W V+R L +S TL RRL EG SF I + ++ A + +P Sbjct: 237 SLCEGRPSIDW----VSRRLGLSRRTLQRRLEGEGTSFAMIQRGILMSEAKRLLAACDRP 292 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 I IA E GY + F+ F + +TPR R+ S Sbjct: 293 IGRIALELGYADAAHFSRAFLDWTGVTPRYWRQTS 327 >UniRef50_C4I1J5 Transcriptional regulator, AraC family n=60 Tax=Burkholderiaceae RepID=C4I1J5_BURPS Length = 375 Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%) Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 TA +A L+++ +TL R+L EG S+QSI D +R + A A+ + ++++A G+ Sbjct: 275 TARALAARLHVAEATLRRKLKQEGHSYQSIKDALRRDLACEALADPARTVADVAAATGFA 334 Query: 240 CPSRFTERFHNRFNITPRE 258 PS F F ++P + Sbjct: 335 EPSAFYRAFRKWRGMSPAD 353 >UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BGF1_9BURK Length = 469 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 48/103 (46%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 S+ + R Y L PG + +A L I+ TL R+L +EG S+ ++L VR A Sbjct: 363 SQADVTRRVYQELTRTPGQFPDIDAIADSLCITSRTLRRKLEAEGTSYSALLTSVRKALA 422 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + + TT I +IA G+ F F TP ++R+ Sbjct: 423 IDYLSTTTLSIDDIASTLGFSDAVGFRHAFKRWTGTTPSDVRR 465 >UniRef50_Q1GKL0 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GKL0_SILST Length = 237 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 49/107 (45%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 + Q L ++L+ S+P W + A +L +S +L R L +EG F + L +R + A Sbjct: 125 TSQRLTDHLHHLIASDPARAWRIEETAAWLGLSTRSLQRYLLAEGGRFSATLRHMRTSLA 184 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 ++ + + + EI GY + F F TPR R RE Sbjct: 185 SDMLRNSDQSLGEIGFCCGYADQAHFQREFRKVSGQTPRRFRSQPRE 231 >UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=Actinomycetales RepID=A4TFK9_MYCGI Length = 346 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 55/119 (46%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 L V + L S + S+ LL E + + +VA L +S STL RRLA EG + Sbjct: 228 LAVAELRRTLDEQSGATSFSKKVRRLLDEDPGQRSCQRVADELSVSTSTLKRRLAEEGTT 287 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 F+ + +A+ + T S+IA E GY + F+ F +P E R++ R Sbjct: 288 FRELRQSCLRESAMMLLITRSMSASQIATELGYGDLANFSHAFKRWTGRSPSEYRRSQR 346 >UniRef50_A6GT10 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GT10_9BURK Length = 335 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 75/188 (39%), Gaps = 27/188 (14%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 E + P+ L ++Q ++ T F N L+ L + G + H Sbjct: 166 EFRHAPLTLESAYQ-------EVLKTTVLFEQPNNRLVVDSSALDLPLPGGIPSA--HHK 216 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLL------LSEPGTKWTANKVARYLYISV 192 A V+L N LL +Q+L + LL LSEP + L+I Sbjct: 217 AQAVIL-------NRLLPDVEEQTLEKQIKRLLKSRLSMLSEP-----IQVIGEILHIHP 264 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 TL RRL SEG S+ IL VR A ++ +V I IA GY FT F Sbjct: 265 RTLQRRLKSEGKSYAEILGTVRHELACEMLKGSVLDIETIAANLGYSDRRSFTSAFLKWQ 324 Query: 253 NITPREIR 260 I+PRE R Sbjct: 325 GISPREFR 332 >UniRef50_Q7MJC9 AraC-type DNA-binding domain-containing protein n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MJC9_VIBVY Length = 256 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 59/132 (44%) Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 S S IQ+ + +L + H+L S R + L + + V Sbjct: 116 SYSVSKNIQQQWLDALYTTLSNFGLLHVLFESEIDSFSKRIHICLKNMNSEEQNITNVCS 175 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 Y+ +S +TL R+L E F++IL VR+ A+ I++ + + I+ GY+ +RF Sbjct: 176 YIGVSKATLMRKLKRENNKFKNILKRVRMEKAMLLIESGITDLEGISISCGYQSYNRFRN 235 Query: 247 RFHNRFNITPRE 258 F + F I P E Sbjct: 236 YFEDEFKILPEE 247 >UniRef50_A4W2Y8 AraC-type DNA-binding domain-containing protein n=1 Tax=Streptococcus suis 98HAH33 RepID=A4W2Y8_STRS2 Length = 192 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 181 ANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 +++A +L +S S L++ E G S + + V++N + ++ + I+EIA GY+ Sbjct: 105 VSEIADFLALSRSYLYKIFKQETGYSIKDYILQVKMNRSCQLLEDASRSITEIAYSVGYQ 164 Query: 240 CPSRFTERFHNRFNITPREIRKASR 264 P F+ F N F+I+P E RK + Sbjct: 165 DPLTFSAAFKNYFHISPTEFRKTQK 189 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 ++ + G ++ +VA L++SV TL RRL G ++ IL + RL A++ ++ + + Sbjct: 239 MVKQEGGYYSLEEVAAVLHLSVRTLKRRLKEHGANYHRILKEARLERAVALLKEG-ETVQ 297 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRK 261 +A + GY+ P+ FT F +P + R+ Sbjct: 298 TVAFQLGYQDPANFTRAFRRWTGCSPSDYRQ 328 >UniRef50_D2LZN1 Transcriptional regulator, AraC family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZN1_BACS4 Length = 362 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Query: 167 CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTT 225 C L+ E G++ A K++ + +S T++R + GVS + + VR++ + ++ T Sbjct: 229 CIELIHREYGSELDAKKLSEAVGVSEPTIYRMVQKNLGVSLNNYIQMVRIHAVCARLEQT 288 Query: 226 VKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 I+E+A + G+ S F FH TPRE RK + Sbjct: 289 DASITEVAFDCGFTSLSNFYRVFHELVGQTPREFRKGKQ 327 >UniRef50_C0EI59 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EI59_9CLOT Length = 325 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPIS 230 + E T +AR +L R + + G SFQ D+RL A + + +P++ Sbjct: 227 IGENSDSVTLESLARQFNYHPQSLSRIIKQQTGSSFQKFFTDIRLEQAARLLCESSEPVA 286 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 EI R+ GY + F + F +F ++P E RK +R Sbjct: 287 EIIRKVGYSNRTWFNKMFQQKFGVSPGEYRKKAR 320 >UniRef50_B8ENG9 Transcriptional regulator, AraC family n=1 Tax=Methylocella silvestris BL2 RepID=B8ENG9_METSB Length = 342 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +++AR L + TL RR+ G +F+S+L L A + ++ I+++A E GY P Sbjct: 247 DRIARRLGLPRRTLQRRMEERGATFESMLRATLLRQASAFLKEPGLSITDLAFELGYSDP 306 Query: 242 SRFTERFHNRFNITPREIR 260 + FT F + ++PRE R Sbjct: 307 AHFTRAFRSWTGMSPREWR 325 >UniRef50_C8WKI5 Transcriptional regulator, AraC family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WKI5_EGGLE Length = 304 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 168 YNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTV 226 ++ L ++ G + +A ISV++L+ GV + L + RL A ++ T Sbjct: 207 HDRLCADLGCDYRLRDIADSFGISVTSLNNYFQGVYGVPVPTYLRERRLQEAAKLLEVTD 266 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + ++ IA GY PS+F+ F R+N TPRE R R Sbjct: 267 ESVATIAARVGYANPSKFSAAFKRRYNATPREYRTERR 304 >UniRef50_Q8GA53 Putative CS12 fimbrial-like upstream regulatory protein n=3 Tax=Escherichia coli RepID=Q8GA53_ECOLX Length = 290 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 50/95 (52%) Query: 165 SRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQT 224 +R L+ S KWT ++ IS + ++L +EGV F+ ++ ++R+ A++ + Sbjct: 190 NRVIELIESNIAKKWTLRLLSEEFSISEIAIRKKLEAEGVIFRELILEIRMKKAMTLLIA 249 Query: 225 TVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 +S+IA + GY S F F F +TP+++ Sbjct: 250 GELSVSKIADKVGYNNISYFISHFRQFFGMTPKQL 284 >UniRef50_A3X3Q4 Transcriptional regulator, AraC family protein n=1 Tax=Roseobacter sp. MED193 RepID=A3X3Q4_9RHOB Length = 341 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 11/132 (8%) Query: 145 SLGVNHVNHLLLSYSKQSLISRC-----YNLLLSEPGTKWTANKVARYLYISVS------ 193 ++G + LLS+ Q + +C + + E TK + V + +S S Sbjct: 204 TIGDTAIWSFLLSHLDQEVEKQCDPEKNFETQVVEEITKLLSGGVPQLSDVSKSMGLGGR 263 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL RRL+ G SFQS+ D+ R A I+++ SEIA G+ S F+ F Sbjct: 264 TLQRRLSERGQSFQSLTDEARRQLAQQLIRSSTYSFSEIAFLTGFSEQSAFSRAFKRWSG 323 Query: 254 ITPREIRKASRE 265 TP+ R A RE Sbjct: 324 QTPKAYRGALRE 335 >UniRef50_B7WZY1 Transcriptional regulator, AraC family n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WZY1_COMTE Length = 337 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 169 NLLLSEPGTKWTA-NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVK 227 +LL S P +W + AR +++S TL R+LA+ G SFQ+I D++R + A+S + T+ Sbjct: 243 HLLQSRP--QWASLESAAREMHMSAPTLQRKLAAAGTSFQAIKDELRRDIAVSRLGTSRV 300 Query: 228 PISEIARENGYKCPSRFTERFHN 250 +E+A + G+ + F F Sbjct: 301 SFAELASDLGFADAAAFQRAFKG 323 >UniRef50_Q5YRJ4 Putative transcriptional regulator n=2 Tax=Actinomycetales RepID=Q5YRJ4_NOCFA Length = 351 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%) Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS--EIA 233 GT T + VAR L +S TL RRL G S++++LD+VR AL+ T P+S +IA Sbjct: 261 GTPPTIDAVARDLNMSARTLRRRLDEAGTSYRALLDEVR--RALAEEMLTAAPLSVDDIA 318 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRKA 262 GY + F F +TP R+A Sbjct: 319 IRLGYAEATPFIHAFKRWTGLTPAAYRRA 347 >UniRef50_A0P1V8 Transcriptional regulator, AraC family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1V8_9RHOB Length = 131 Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%) Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 L LS P + ++A L S TL R+LA +GVS ++I+++ RL A + T Sbjct: 21 TLALSGP---VSVGQIAAQLGASSRTLQRQLADQGVSLRAIIEESRLEIARVLLCKTDLD 77 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + EIA +GY PS F+ F PR R+ Sbjct: 78 VQEIAARSGYSTPSGFSRAFARWAGCAPRIFRR 110 >UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI96_CATAD Length = 315 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSIL 210 N L ++ Q I + + +PG +WT ++AR +S S+ R G + L Sbjct: 200 NWLAGAFDPQ--IGLALSAIHRDPGREWTVEELARACNLSRSSFAARFVERVGKPPATYL 257 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 VRL+ A + ++ T P++++A GY + F+ F NR+ P R+ R Sbjct: 258 AHVRLDAATTLLRDTFLPVTQVAETVGYASEAAFSRAFKNRYGTPPARWRRDIR 311 >UniRef50_D2TIS0 Transcriptional regulator of virulence RegA n=5 Tax=Enterobacteriaceae RepID=D2TIS0_CITRO Length = 276 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 44/80 (55%) Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 W +A L++S ++ ++L E +F +++ D+R+ +A I T+ K I+ IA E GY Sbjct: 188 WRLVDLANILHMSEVSIRKKLEKESNNFNALVLDIRMYHAAKLITTSDKHINSIANEVGY 247 Query: 239 KCPSRFTERFHNRFNITPRE 258 S F F F ITP++ Sbjct: 248 TSTSYFIRNFKEFFGITPKQ 267 >UniRef50_B7QRV0 Transcriptional regulator, AraC family n=1 Tax=Ruegeria sp. R11 RepID=B7QRV0_9RHOB Length = 367 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 46/82 (56%) Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 A+++AR + +S TL+RRLA+EG S++ +L + ++ A S +Q I+EIA G+ Sbjct: 251 ASEIARDMGMSERTLYRRLAAEGRSYRDVLTEAQMTLAQSLLQGGDCSIAEIAFLTGFSE 310 Query: 241 PSRFTERFHNRFNITPREIRKA 262 S F+ F P + R A Sbjct: 311 QSTFSRAFKRHVGQAPAQFRAA 332 >UniRef50_Q5DYJ4 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5DYJ4_VIBF1 Length = 269 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%) Query: 150 HVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 ++N+ +K+S+ S L+ P WT V++ L + STL R L E +SF + Sbjct: 148 NINNTFSINTKRSVKSLISELVKKSPEHSWTLITVSKELNTTPSTLRRHLKKENISFSKL 207 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 L +RL L+ + + I +++ +G+ + F + F +++TP E R SR Sbjct: 208 LLKIRLGLGLNYLTFSNHSILKVSYLSGFNSSAYFCDVFKKEYHMTPSEFRINSRN 263 >UniRef50_A9DB22 Transcriptional regulator, AraC family protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DB22_9RHIZ Length = 342 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 38/77 (49%) Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 A L +S TL RRL G S Q I+DD R A + + T +SEI+ + G+ P+ F Sbjct: 260 AERLGMSARTLQRRLTEAGTSMQEIIDDSRKEMAQNLLTETTLSLSEISFQLGFSAPAAF 319 Query: 245 TERFHNRFNITPREIRK 261 T F TP RK Sbjct: 320 TRSAIRWFGKTPSAYRK 336 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA L +S TL RRL EG S+Q + D +R + AL + I EIA++ G+ PS Sbjct: 251 VAEQLGLSPQTLRRRLKEEGTSYQELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSA 310 Query: 244 FTERFHNRFNITPREIRK 261 F F +TP + R+ Sbjct: 311 FHRAFKKWVGLTPSDYRQ 328 >UniRef50_A3UQ73 Helix-turn-helix, Fis-type protein n=3 Tax=Vibrionaceae RepID=A3UQ73_VIBSP Length = 339 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 44/79 (55%) Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 + VA L+IS TL+R+L +GVSF+ + D RL +++ + I+ +A E G+ Sbjct: 260 DSVANNLHISPRTLNRKLKQQGVSFRRLFDKYRLELSMTLLNQNDGNITYVAHELGFSDS 319 Query: 242 SRFTERFHNRFNITPREIR 260 S F+ F N +P E+R Sbjct: 320 SAFSRAFKNWTGHSPTELR 338 >UniRef50_B8IVW5 Transcriptional regulator, AraC family n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IVW5_METNO Length = 320 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAI 222 I+R + +++ PG T +A +S S R + G S IL D+R+ A + Sbjct: 211 ITRAFADMVARPGAAHTVRSLAHSAGLSRSAFMARFSEIFGRSPMGILRDLRMRQAALDL 270 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 TT P+ +A GY+ S F F +N+ P E R+ Sbjct: 271 TTTSAPVDVVAYNAGYESRSSFVRAFRKAYNVDPSEYRQ 309 >UniRef50_A6NU64 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NU64_9BACE Length = 334 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 96/238 (40%), Gaps = 38/238 (15%) Query: 43 NWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLI-----------ESF 91 + H+ + ++FP GY AE + L IDL ES Sbjct: 108 DLTAHSSACCADSAMMFPLGY--------------AEGISLSIDLPVLDANCPEILKESG 153 Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS---RGF-STKIQEHLAMGVLLSLG 147 L T+ + +P PEL + L ++ S R + KIQE +LL L Sbjct: 154 LDLPTIQSTFCGEKPVAIPACPELEGIFAPLYSAPSFRRRAYLQLKIQE-----LLLYLS 208 Query: 148 -VNHVNHLLLSYSKQS--LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EG 203 V H L Y Q LI + L ++T +++ I+ STL + G Sbjct: 209 DVEPEKHALTQYGSQQTELIKEIHRQLTEHLDQRFTIEALSKQYLINTSTLKEVFKTVYG 268 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + + + + R+ A+ ++ T PISEIA GY+ +F++ F + I P E R+ Sbjct: 269 LPIATYMKEYRMAQAMKLLRETRIPISEIADRVGYETQGKFSKAFKDVTQILPTEYRR 326 >UniRef50_B5JW86 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JW86_9GAMM Length = 320 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 46/95 (48%) Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 LL + G + VA L++S TLHR L EG SF+ I+ +V A ++ + IS Sbjct: 226 LLMQHGELPSQELVAEELHMSTRTLHRLLQREGTSFREIVKEVLTVQAKRLLENSELSIS 285 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +IA E GY + FT F P R+ S + Sbjct: 286 QIALELGYSDSANFTRAFKKATGQAPSAFRQPSHQ 320 >UniRef50_Q2BMD8 Transcriptional Regulator, AraC family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMD8_9GAMM Length = 1040 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 39/78 (50%) Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +VA L +S+ TL R+L + G SFQ I D+ R L IQ EI+ + G+ S Sbjct: 280 QVASELGLSLRTLQRKLGNLGSSFQDIYDETRKEICLQLIQRGEHSFGEISYQLGFSNQS 339 Query: 243 RFTERFHNRFNITPREIR 260 F + F N TP E R Sbjct: 340 AFQKAFKRWMNTTPSEYR 357 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 43/80 (53%) Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 A KVA + +S TL+R+L EGVSFQ +++ VR + AL +Q +SEIA G+ Sbjct: 251 AEKVAEKMNMSRHTLYRKLKQEGVSFQELVEQVRKDKALDYLQKGKYSLSEIAFLLGFSE 310 Query: 241 PSRFTERFHNRFNITPREIR 260 S F+ F +P R Sbjct: 311 LSAFSRAFKRWTGESPASYR 330 >UniRef50_Q0VLG4 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q0VLG4_ALCBS Length = 348 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 + Q SR Y L+ G + ++A +++ TL R L + GVS++S+L++VR+ A Sbjct: 247 ADQDWASRVYARLMQAEGMLPSLEQLAGNFHVTSRTLRRYLNALGVSYRSLLEEVRMTKA 306 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERF 248 ++ ++ + + ++A GY PS F F Sbjct: 307 MAYLKANIT-VQQVASRLGYADPSNFARAF 335 >UniRef50_A4AS09 Putative two-component system sensor kinase/response regulator fusion protein n=1 Tax=Flavobacteriales bacterium HTCC2170 RepID=A4AS09_9FLAO Length = 365 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Query: 177 TKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 TK +A +YL S S L+R + S G S L + RLN ALS ++ ISEIA E Sbjct: 276 TKTSALDFCKYLGFSKSKLYRTMMSIIGKSPNGFLKEYRLNKALSILEKQTTNISEIAYE 335 Query: 236 NGYKCPSRFTERFHNRFNITPREIRK 261 G+ P+ F++ F + + P + K Sbjct: 336 TGFSSPTYFSKCFQETYGMLPSKYGK 361 >UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IVW4_COMTE Length = 364 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 + + SY + ++ + LL ++ G T + V+ L++S TL R+L EG+SFQ I D Sbjct: 246 DWIFTSYHEHAIRLKVRELLHADLGR--TLDDVSSRLHMSSRTLIRKLQEEGLSFQGIKD 303 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++R + A+ + ++EI+ G+ P+ F F + +TP R A R Sbjct: 304 ELRRDLAILNLVRNDVSLAEISYALGFSTPAVFHRAFRHWTGMTPGTYRTAQR 356 >UniRef50_A6AXJ0 HTH-type transcriptional activator RhaS n=2 Tax=Vibrionaceae RepID=A6AXJ0_VIBPA Length = 278 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Query: 178 KWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 ++ +A IS L + L+ G+S+ + L+ +R++ AL A++ + + I++IA + Sbjct: 185 QFNLQDLAEQAGISTKQLSKILSRLTGMSYPNYLNHIRMSKALEALKYSDRSITDIAFDV 244 Query: 237 GYKCPSRFTERFHNRFNITPREIR 260 GY+ + F+ +F FN TPRE+R Sbjct: 245 GYQDSNYFSSKFKKVFNATPREVR 268 >UniRef50_P33234 HTH-type transcriptional regulator adiY n=102 Tax=Enterobacteriaceae RepID=ADIY_ECOLI Length = 253 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 48/98 (48%) Query: 168 YNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVK 227 Y ++ S+ W + VA L +S S L ++L SE S+ I+ R+ A++ + K Sbjct: 152 YQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGK 211 Query: 228 PISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 IS++++ GY S F F + + +TP RE Sbjct: 212 NISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRE 249 >UniRef50_C4L999 Transcriptional regulator, AraC family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L999_TOLAT Length = 334 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 42/74 (56%) Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L +S TL+R L EGV+FQSIL ++R+ A ++ + + EI+ G+ S FT Sbjct: 259 LNMSRWTLNRHLHLEGVNFQSILKEIRMKEACRLLKESHLTLQEISEIIGFSSQSTFTRF 318 Query: 248 FHNRFNITPREIRK 261 F +F++ P RK Sbjct: 319 FKGQFDVNPSNFRK 332 >UniRef50_B6FT88 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FT88_9CLOT Length = 293 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGV---SFQSILDDV 213 S LI LLS + T KVA L I+ TL + + G+ +F L+++ Sbjct: 171 SVGSDDLIYAAMAYLLSHFQEELTLGKVAEALGINKYTLSKIFS--GIFHTNFNQYLNEI 228 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 RLN A S ++ T I++I E G++ F F R+N TP E RK Sbjct: 229 RLNYATSLLENTEMRITDIYLEAGFESQRTFNRTFQQRYNRTPSEYRK 276 >UniRef50_Q83RF4 HTH-type transcriptional regulator ydeO n=59 Tax=Enterobacteriaceae RepID=YDEO_SHIFL Length = 253 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 N+ L+ P W + LYIS S L ++L E +F IL D R+ +A + I+ Sbjct: 144 NMKLAHP---WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVE-GS 199 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +++IA + GY S F F F +P+ + K R Sbjct: 200 VNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYR 235 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKW-TANKVARYLYISVSTLHRRLASEGVSFQSIL 210 N L+ + SL +R +L + + T ++A L+++ TL R+L +EG S+Q I Sbjct: 221 NLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAYTLSRKLKAEGSSYQKIK 280 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 D++R + A+ + +SEI+ + G+ P F+ F + ++P RK + Sbjct: 281 DNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTGLSPLAYRKQDQ 334 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77634 Uncharacterized HTH-type transcriptional regulat... 358 2e-97 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 252 1e-65 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 242 7e-63 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 241 2e-62 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 233 4e-60 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 229 8e-59 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 217 4e-55 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 214 3e-54 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 211 2e-53 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 209 9e-53 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 209 1e-52 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 205 1e-51 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 205 1e-51 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 203 4e-51 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 203 5e-51 UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=... 198 1e-49 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 197 4e-49 UniRef50_B0TKQ1 Transcriptional regulator, AraC family n=5 Tax=G... 196 8e-49 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 194 3e-48 UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 T... 193 6e-48 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 192 7e-48 UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family ... 192 8e-48 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 190 5e-47 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 188 1e-46 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 185 1e-45 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 177 4e-43 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 175 1e-42 UniRef50_D1E8F4 AraC protein n=21 Tax=Neisseria RepID=D1E8F4_NEIGO 173 4e-42 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 172 1e-41 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 171 2e-41 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 170 5e-41 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 168 1e-40 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 168 2e-40 UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=V... 168 2e-40 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 162 9e-39 UniRef50_B9JBF3 Transcriptional regulator protein n=1 Tax=Agroba... 156 8e-37 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 155 1e-36 UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=D... 154 3e-36 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 154 3e-36 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 153 8e-36 UniRef50_Q7MC65 AraC-type DNA-binding domain-containing protein ... 152 9e-36 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 152 1e-35 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 148 1e-34 UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n... 147 3e-34 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 144 2e-33 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 143 4e-33 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 143 5e-33 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 143 7e-33 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 142 1e-32 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 141 2e-32 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 141 3e-32 UniRef50_B5J4U5 Transcriptional regulator, AraC family protein n... 141 3e-32 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 141 3e-32 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 140 4e-32 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 140 6e-32 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 140 6e-32 UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Gr... 140 6e-32 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 139 8e-32 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 139 1e-31 UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=A... 139 1e-31 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 139 1e-31 UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=... 138 2e-31 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 138 2e-31 UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=P... 138 3e-31 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 138 3e-31 UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=C... 137 3e-31 UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=un... 137 3e-31 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 137 3e-31 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 137 4e-31 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 137 4e-31 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 136 5e-31 UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=... 136 7e-31 UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=P... 136 7e-31 UniRef50_A9ATI3 AraC family transcriptional regulator n=26 Tax=B... 136 7e-31 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 136 8e-31 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 136 8e-31 UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=g... 136 1e-30 UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=B... 135 1e-30 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 135 1e-30 UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=... 135 1e-30 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 135 1e-30 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 135 1e-30 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 135 1e-30 UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=m... 135 1e-30 UniRef50_A3WY00 Transcriptional regulator, AraC family protein n... 135 2e-30 UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=... 135 2e-30 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 135 2e-30 UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=P... 135 2e-30 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 135 2e-30 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 135 2e-30 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 134 3e-30 UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein ... 134 3e-30 UniRef50_C6CDS4 Transcriptional regulator, AraC family n=1 Tax=D... 134 3e-30 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 134 3e-30 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 134 4e-30 UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family)... 134 4e-30 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 133 4e-30 UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein ... 133 5e-30 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 133 5e-30 UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=P... 133 6e-30 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 133 8e-30 UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=m... 133 8e-30 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 133 9e-30 UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, A... 132 9e-30 UniRef50_A0YC38 Transcriptional regulator OruR n=3 Tax=unclassif... 132 1e-29 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 132 1e-29 UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter ... 132 1e-29 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 131 2e-29 UniRef50_Q1N6M1 Probable transcriptional regulator n=1 Tax=Berma... 131 2e-29 UniRef50_Q397M3 Transcriptional regulator, AraC family n=2 Tax=B... 131 2e-29 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 131 2e-29 UniRef50_B0U9X7 Transcriptional regulator, AraC family n=10 Tax=... 131 3e-29 UniRef50_A1U5N3 Transcriptional regulator, AraC family n=2 Tax=G... 131 3e-29 UniRef50_Q1N5E2 Transcriptional Regulator, AraC family protein n... 131 3e-29 UniRef50_A8ZYY6 Transcriptional regulator, AraC family n=1 Tax=D... 131 3e-29 UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein ... 131 3e-29 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 131 3e-29 UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=... 130 4e-29 UniRef50_Q0G2J4 Transcriptional regulator, AraC family protein n... 130 4e-29 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 130 4e-29 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 130 4e-29 UniRef50_Q1LKT4 Transcriptional regulator, AraC family n=3 Tax=P... 130 4e-29 UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=R... 130 5e-29 UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=M... 130 5e-29 UniRef50_C4ZIP3 Transcriptional regulator, AraC family n=1 Tax=T... 129 9e-29 UniRef50_Q5YRJ4 Putative transcriptional regulator n=2 Tax=Actin... 129 9e-29 UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=m... 129 1e-28 UniRef50_Q1YPC6 Transcriptional regulator OruR n=4 Tax=unclassif... 129 1e-28 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 129 1e-28 UniRef50_A6F8A8 Transcriptional regulator, AraC family n=1 Tax=M... 128 1e-28 UniRef50_C9YEB3 Putative uncharacterized protein n=1 Tax=Curviba... 128 1e-28 UniRef50_A7IPD7 Helix-turn-helix-domain containing protein AraC ... 128 2e-28 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 128 2e-28 UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n... 128 2e-28 UniRef50_Q2S7F1 AraC-type DNA-binding domain-containing protein ... 128 2e-28 UniRef50_Q1DD76 Transcriptional regulator, AraC family n=1 Tax=M... 128 2e-28 UniRef50_B1J547 Transcriptional regulator, AraC family n=24 Tax=... 128 2e-28 UniRef50_A7HP74 Helix-turn-helix-domain containing protein AraC ... 127 3e-28 UniRef50_Q2SAU6 AraC-type DNA-binding domain-containing protein ... 127 3e-28 UniRef50_Q5P369 Transcriptional regulator, AraC family, n=5 Tax=... 127 4e-28 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 127 5e-28 UniRef50_B5JW86 Helix-turn-helix-domain containing protein, AraC... 126 5e-28 UniRef50_A4XVD3 Transcriptional regulator, AraC family n=1 Tax=P... 126 5e-28 UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS fa... 126 6e-28 UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=G... 126 6e-28 UniRef50_A3QFM4 Transcriptional regulator, AraC family n=1 Tax=S... 126 6e-28 UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type... 126 7e-28 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 126 7e-28 UniRef50_P72171 Ornithine utilization regulator n=7 Tax=Pseudomo... 126 7e-28 UniRef50_Q488V2 Transcriptional regulator, AraC family n=1 Tax=C... 126 9e-28 UniRef50_Q4KC58 Transcriptional regulator, AraC family n=14 Tax=... 126 9e-28 UniRef50_B8HXD6 Transcriptional regulator, AraC family n=3 Tax=C... 126 1e-27 UniRef50_B7RTY0 Transcriptional regulator, AraC family n=1 Tax=m... 126 1e-27 UniRef50_B4X435 Transcriptional regulator, AraC family protein n... 125 1e-27 UniRef50_A3V8S6 Virulence regulating protein n=1 Tax=Loktanella ... 125 1e-27 UniRef50_A1U2L9 Transcriptional regulator, AraC family n=2 Tax=M... 125 1e-27 UniRef50_Q394T5 Transcriptional regulator, AraC family n=3 Tax=B... 125 1e-27 UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=... 125 2e-27 UniRef50_A4A781 AraC-family transcriptional regulator n=1 Tax=Co... 125 2e-27 UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=A... 125 2e-27 UniRef50_B4X114 Transcriptional regulator, AraC family protein n... 125 2e-27 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 125 2e-27 UniRef50_Q16DG7 Transcriptional regulator, AraC family, putative... 125 2e-27 UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=C... 124 2e-27 UniRef50_A9AT03 Transcriptional regulator, AraC family n=13 Tax=... 124 2e-27 UniRef50_C1DS97 Transcriptional regulator, AraC family n=2 Tax=G... 124 3e-27 UniRef50_B7KQC6 Transcriptional regulator, AraC family n=2 Tax=M... 124 3e-27 UniRef50_B8KPR3 Helix-turn-helix-domain containing protein, AraC... 124 3e-27 UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C... 124 3e-27 UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reineke... 124 3e-27 UniRef50_UPI00016A75A2 transcriptional regulator, AraC family pr... 124 3e-27 UniRef50_Q0VTC8 Transcriptional regulator, AraC family n=1 Tax=A... 123 4e-27 UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=B... 123 4e-27 UniRef50_Q46UH7 Helix-turn-helix, Fis-type n=1 Tax=Ralstonia eut... 123 4e-27 UniRef50_B4WYI1 Transcriptional regulator, AraC family protein n... 123 5e-27 UniRef50_A9GMV5 Transcriptional regulator, AraC family n=1 Tax=S... 123 5e-27 UniRef50_C6LF57 Transcriptional regulator, AraC family n=1 Tax=B... 123 5e-27 UniRef50_Q24N17 Putative uncharacterized protein n=1 Tax=Desulfi... 123 5e-27 UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=R... 123 5e-27 UniRef50_A6GMI7 Putative transcriptional regulator, AraC family ... 123 5e-27 UniRef50_A3TUD8 Transcriptional regulator, AraC family protein n... 123 6e-27 UniRef50_Q1YPI7 Transcriptional regulator, AraC family protein n... 123 6e-27 UniRef50_Q88GH1 Transcriptional regulator, AraC family n=6 Tax=P... 123 6e-27 Sequences not found previously or not previously below threshold: UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vi... 139 1e-31 UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n... 137 3e-31 UniRef50_Q0VMP4 Transcriptional regulator, AraC family n=2 Tax=A... 132 1e-29 UniRef50_Q5ZTY8 Transcriptional regulator OruR, AraC family n=4 ... 132 1e-29 UniRef50_D2QK57 Transcriptional regulator, AraC family n=2 Tax=S... 131 2e-29 UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=S... 131 2e-29 UniRef50_Q1N621 AraC-type DNA-binding domain-containing protein ... 131 2e-29 UniRef50_A3Y8Y2 Putative uncharacterized protein n=1 Tax=Marinom... 131 2e-29 UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=C... 131 3e-29 UniRef50_B5JY44 Transcriptional regulator, AraC family, putative... 131 3e-29 UniRef50_Q00753 Msm operon regulatory protein n=8 Tax=Streptococ... 130 4e-29 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 130 5e-29 UniRef50_Q094J0 Transcriptional regulator, AraC family protein n... 130 6e-29 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 130 6e-29 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 130 6e-29 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 129 8e-29 UniRef50_C1DHF9 Transcription activator in PHB biosynthesis, Ara... 129 1e-28 UniRef50_C5T965 Transcriptional regulator, AraC family n=1 Tax=A... 129 1e-28 UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=M... 128 1e-28 UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=D... 128 1e-28 UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=D... 128 2e-28 UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=C... 128 2e-28 UniRef50_B5JS07 AraC-type DNA-binding domain-containing protein ... 128 3e-28 UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=C... 128 3e-28 UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=C... 127 3e-28 UniRef50_P68913 Uncharacterized HTH-type transcriptional regulat... 127 4e-28 UniRef50_Q1N2P4 AraC-type DNA-binding domain-containing protein ... 127 4e-28 UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=R... 127 4e-28 UniRef50_C6W363 Transcriptional regulator, AraC family n=1 Tax=D... 127 5e-28 UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=H... 126 5e-28 UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=G... 126 6e-28 UniRef50_A4CME3 Transcriptional regulator, AraC family protein n... 126 6e-28 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 126 6e-28 UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family)... 126 7e-28 UniRef50_Q0VLF5 Transcriptional regulator, AraC family n=2 Tax=A... 126 8e-28 UniRef50_D0C0B4 Virulence regulating protein n=1 Tax=Acinetobact... 126 8e-28 UniRef50_B5JRR7 Transcriptional regulator, AraC family, putative... 126 8e-28 UniRef50_C7PKQ0 Transcriptional regulator, AraC family n=1 Tax=C... 126 9e-28 UniRef50_D0I5P8 Transcriptional regulator AraC family n=1 Tax=Gr... 126 1e-27 UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limno... 126 1e-27 UniRef50_A1U2J4 Transcriptional regulator, AraC family n=3 Tax=M... 125 1e-27 UniRef50_Q1IAH1 Putative DNA-binding protein, AraC family n=1 Ta... 125 1e-27 UniRef50_B8KM41 Helix-turn-helix-domain containing protein, AraC... 125 2e-27 UniRef50_A6FDG0 Transcriptional regulator, AraC family n=1 Tax=M... 125 2e-27 UniRef50_A9BZN3 Transcriptional regulator, AraC family n=1 Tax=D... 125 2e-27 UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabac... 125 2e-27 UniRef50_Q2BN29 Transcriptional regulator, AraC family protein n... 125 2e-27 UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein ... 125 2e-27 UniRef50_D0LMC0 Transcriptional regulator, AraC family n=1 Tax=H... 124 2e-27 UniRef50_B5JSW3 Transcriptional Regulator, AraC family n=1 Tax=g... 124 2e-27 UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=M... 124 2e-27 UniRef50_Q21W07 Transcriptional regulator, AraC family n=1 Tax=R... 124 3e-27 UniRef50_B5JV53 Transcriptional regulator, AraC family n=1 Tax=g... 124 3e-27 UniRef50_Q1YQ09 Probable transcriptional regulator n=2 Tax=uncla... 124 3e-27 UniRef50_A9GIA9 Transcriptional regulator, AraC family n=1 Tax=S... 124 3e-27 UniRef50_Q88C44 Transcriptional regulator, AraC family n=16 Tax=... 124 4e-27 UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=S... 124 4e-27 UniRef50_Q0VP86 Transcriptional regulator, AraC family n=2 Tax=A... 124 4e-27 UniRef50_B6QYV1 Transcriptional regulator, AraC family n=1 Tax=P... 124 4e-27 UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Morit... 124 4e-27 UniRef50_A4BF80 Transcriptional regulator, AraC family protein n... 124 4e-27 UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=R... 123 4e-27 UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostri... 123 5e-27 UniRef50_A0Z3K7 Transcriptional regulator, AraC family protein n... 123 5e-27 UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n... 123 5e-27 UniRef50_A4XSK5 Transcriptional regulator, AraC family n=10 Tax=... 123 5e-27 UniRef50_Q21WS8 Transcriptional regulator, AraC family n=1 Tax=R... 123 6e-27 >UniRef50_P77634 Uncharacterized HTH-type transcriptional regulator ybcM n=37 Tax=Enterobacteriaceae RepID=YBCM_ECOLI Length = 265 Score = 358 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP Sbjct: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE Sbjct: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT Sbjct: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC Sbjct: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 Query: 241 PSRFTERFHNRFNITPREIRKASRE 265 PSRFTERFHNRFNITPREIRKASRE Sbjct: 241 PSRFTERFHNRFNITPREIRKASRE 265 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 122/259 (47%), Positives = 177/259 (68%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF 65 + L ++EI + H +H+VK LMPALCR+RQG+K+I W+ HT T D++Q+I+FP GYE Sbjct: 2 QAKLSMQEISSRQAHVLHKVKLLMPALCRVRQGRKIIEWQGHTETADHSQLIVFPAGYEL 61 Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 I N P YL+E++Y+P+ + + K Y + + ++ F + EL YCW+QLK + Sbjct: 62 QIANIPAGEGYLSEIIYIPLSITNFYLKHYPLPHKKKDVQRFCIKLTNELEYCWKQLKFA 121 Query: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 + +S+++ EH+ +G+LL L ++ L S ++ +RC +LL+ P +W+A VA Sbjct: 122 LDHDYSSQLLEHMLLGLLLILRETSAANIFLDSSDNTVTARCQDLLILSPSARWSARTVA 181 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 L++SVST HR LA+EG SFQ ILDDVRL NAL+AIQTT KPI EIAR+NGY+CPSRFT Sbjct: 182 EQLHMSVSTFHRHLAAEGGSFQQILDDVRLGNALNAIQTTSKPIGEIARDNGYQCPSRFT 241 Query: 246 ERFHNRFNITPREIRKASR 264 RF R+ ITPR +R+A + Sbjct: 242 SRFQKRYQITPRALRQAIQ 260 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 242 bits (619), Expect = 7e-63, Method: Composition-based stats. Identities = 99/256 (38%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 10 KIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIEN 69 +++I + H++ RV PALCR+RQG K I W + ++LFP G E + N Sbjct: 10 TVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMAN 69 Query: 70 YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKT-SFFLPQNPELIYCWEQLKTSVSR 128 AG Y AEMLYLP L+ F+K Y T S LP P L W+ + ++ Sbjct: 70 QTGAGYYRAEMLYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLWDTMMDALRA 129 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 + + HLA +LL+L + LLL+ L + LLL +P W A +A+ L Sbjct: 130 PLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDIAQRL 189 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +++ STL RRL +EG F+ ILDDVRL AL A+Q+ PI +IA ++GY PSRFT RF Sbjct: 190 HMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYASPSRFTARF 249 Query: 249 HNRFNITPREIRKASR 264 R+ +TP +R+A R Sbjct: 250 VRRYGLTPSALRQAMR 265 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 138/258 (53%), Gaps = 1/258 (0%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF 65 + + EI + H +H+V PALC +RQG K++ W + + +ILFP G E Sbjct: 8 QMVISSAEIVARRAHTLHQVTVFAPALCHVRQGSKLVQWGAQAASAGQSSLILFPAGAEV 67 Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYT-VTDQIRNKTSFFLPQNPELIYCWEQLKT 124 I N PE G Y ++M+YLP L+ F+ Y + S +P + W+ L Sbjct: 68 SIANTPERGHYCSDMVYLPQSLLRRFRHWYGALAVTPAPAPSLCVPLDIHTRLAWDSLLL 127 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 +V + +H AMGVLL+L + +LL + + +LL +P W+ + V Sbjct: 128 NVKGHAPDALLQHAAMGVLLALYLAGQAGVLLIDRRDKWAEQVQQVLLLDPARNWSVSDV 187 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 AR L+I STL R+L E SF+ IL++VR+ AL A+QTT I EIA ++GY PSRF Sbjct: 188 ARSLHIGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYISPSRF 247 Query: 245 TERFHNRFNITPREIRKA 262 T RF F +TPR +R+A Sbjct: 248 TSRFQQHFGLTPRRLREA 265 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 233 bits (595), Expect = 4e-60, Method: Composition-based stats. Identities = 87/262 (33%), Positives = 133/262 (50%), Gaps = 1/262 (0%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 +A + ++ EIR + RV MPALCR+R G K I ++ +Q++L P Sbjct: 4 IAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPA 63 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQ-KLYTVTDQIRNKTSFFLPQNPELIYCWE 120 G E I N P G YLA+++ LP DL++ F+ + + + R + L W Sbjct: 64 GCELDIVNLPGPGGYLADVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWT 123 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 L S+ + +I++H A GVLL+L + LL SL L++ +P W+ Sbjct: 124 LLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWS 183 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 AR L + STL RRLA E FQ+IL++VR+ AL +Q + I++IA +GY Sbjct: 184 VETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYAS 243 Query: 241 PSRFTERFHNRFNITPREIRKA 262 SRF RF R+ +TP +R+ Sbjct: 244 ASRFAARFRQRYGLTPSALRRT 265 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 229 bits (584), Expect = 8e-59, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 138/252 (54%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L EI + +HRV+ PALCR+++G KVI + Q+I+ P E + Sbjct: 11 LTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVI 70 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N PE GL+ +++L L +L+ F+ Y TS P EL + W+ + +V Sbjct: 71 NQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVRE 130 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 G S +Q+H MG+LL+L LL +Q L ++ L++ P W+ ++VA+ L Sbjct: 131 GLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKML 190 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 ++ STL RRL E SF+ I+++VR+ +AL +QTT +PI EIA+ +GY+ SRFT RF Sbjct: 191 FLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARF 250 Query: 249 HNRFNITPREIR 260 + + P+ +R Sbjct: 251 RQHYGLLPKHVR 262 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 217 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 108/252 (42%), Gaps = 6/252 (2%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 ++ + + + +H V P + + G K + W TL + ++ P Sbjct: 6 VQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFV 65 Query: 69 NYPEAGLYLAEMLYL-PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P+ + + L L +E T + Q + EL YC+E L Sbjct: 66 NVPQQAQFYSRTLTLHEAPPVE----WITQSSQYERNEQPRVRVTAELAYCFELLYEMNQ 121 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + S + Q +G L HLL S+ R L PG + V+ + Sbjct: 122 QSLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSAH 181 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 +S +TL R LA+EG F+ +L +VR+N AL+ +Q ++P+ E+A GY+ +RF+ R Sbjct: 182 FAMSRATLARHLAAEGTGFREVLSEVRMNYALALLQE-LRPLMEVAVACGYQSLTRFSAR 240 Query: 248 FHNRFNITPREI 259 F ++ +TP + Sbjct: 241 FKQQYRLTPYQY 252 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 5/254 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L++ + +HRV P + + QG K + W+ L D +L P G++ Sbjct: 6 LQLHHYLGIRQQPLHRVLIYAPTIIWVEQGHKQLWWQEKRLAFDQASWLLIPAGHQLTFV 65 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N PE G + + L L + Q L +P L +C+E + + R Sbjct: 66 NQPEQGKFRSRALTLLTPPPVE----WLGATQAGPLREPRLTVSPALAFCFELVCSMADR 121 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 + Q L G L LL +L R L EPG T VA + Sbjct: 122 RLNEATQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGVAPHF 181 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S +++ R+LA+EG SF+ +L VR+++AL+ +Q + P+ E A GY PSRF RF Sbjct: 182 AMSRASMARKLAAEGRSFRQLLTQVRMSHALTLLQQGLVPL-ETALACGYDSPSRFAARF 240 Query: 249 HNRFNITPREIRKA 262 F +TP + + Sbjct: 241 KQEFGLTPYQYLRT 254 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 62/261 (23%), Positives = 116/261 (44%), Gaps = 9/261 (3%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 + + I + + + + V L+P++ + QG+K W + +L P Sbjct: 4 SAIVITQYQGQQAQNLRNVPILLPSIVAVEQGEKQFQWHGRWIRFHKKNWLLIPAHSRIT 63 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELI-----YCWEQ 121 N P + + + LI ++ ++ Q + S L ++ Y W Q Sbjct: 64 FVNNPHQTQFRSTQISF---LIPPTAEMIQLSQQNADTVSNHLDSPEFIVDDEGRYLW-Q 119 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 L S+ + S IQ+ L G+ L HLL + + S + +P +T Sbjct: 120 LLLSMPKELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYTI 179 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +V + +S +TL RRL E F+ +L VR+ +ALS +Q + + E+A++ GY+ Sbjct: 180 EQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQSE 239 Query: 242 SRFTERFHNRFNITPREIRKA 262 RFT+RF +F ++P++ +K Sbjct: 240 VRFTQRFQKQFGLSPKQYQKT 260 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 209 bits (532), Expect = 9e-53, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 111/251 (44%), Gaps = 2/251 (0%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 K+ ++ + + V L P+L +IR G+K + W+ L D + ++L G + E Sbjct: 5 FKVSQMYGLQTQRLRNVAILTPSLFKIRSGRKRLFWQDDVLEFDASTLLLTKAGQQLTFE 64 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N P +L+ + + E ++ +N+ S N ++ + L ++ Sbjct: 65 NEPSKERFLSVQMSFLLPPAEGMIQM--SIKVAKNECSPRFKPNRSVMASLDFLLELDTQ 122 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 S Q + G L HLL S + LL P + ++VA + Sbjct: 123 SVSETAQAYWLNGFYQQLAEVGKLHLLFEGHSVSFEQKITELLQQAPWQDYQLDQVATHF 182 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S +TL RRL E F+++L VR+N ALS +Q + +IA GY+ RF++RF Sbjct: 183 SMSRATLIRRLKEENTQFRTLLTRVRMNYALSLMQQGYRQQMDIAVRCGYQSQERFSQRF 242 Query: 249 HNRFNITPREI 259 + F ITP + Sbjct: 243 YKSFGITPSQY 253 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 209 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 2/252 (0%) Query: 8 NLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYI 67 ++ R + ++ V+ P++ +I +G K + W+ + + I+L Sbjct: 4 QYQVTLFRAEQQQKLRNVRIHSPSIIQIIKGSKRLFWKDEAFDILHPNIMLCEANASLNF 63 Query: 68 ENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 EN P+ G +L+ M + S + L + + L L + Sbjct: 64 ENLPQQGRFLSRMFSF--HCVPSDEMLELSMSNALGNYVPAVETDKALQATLNALFSFER 121 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 S Q + MG+ L + H L + S S + L PG VA Sbjct: 122 ESLSEATQRYWMMGLYQQLAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAER 181 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 +S +TL R+L EG ++ +L +VRLN+AL +Q ++ +A+ GY+ RF++R Sbjct: 182 FAMSRATLIRKLKQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQR 241 Query: 248 FHNRFNITPREI 259 F +F +TP E Sbjct: 242 FKGKFGLTPSEY 253 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 119/250 (47%), Gaps = 4/250 (1%) Query: 13 EIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 E + + +V P++ R+ G+K + W+ ++ V Q++L P G N P Sbjct: 6 EYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISFVNRPF 65 Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 G Y A L LP DL + + T R+ + + W L S+S + Sbjct: 66 LGRYRAVQLLLPHDLPQGI---LSSTADWRDPMPVQ-NVSRAVDLAWNALLQSLSLSLAD 121 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 +Q H +LLSL L ++++S+ L+ P W ++A L++S Sbjct: 122 SVQLHYLAALLLSLPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKLHMST 181 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 ++L R+LA E SF+ +L +VRL++ L+ +Q + +P+ ++A GY+ +F+ RF +F Sbjct: 182 ASLRRKLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRFKQQF 241 Query: 253 NITPREIRKA 262 +TP R+ Sbjct: 242 GLTPAAYRRT 251 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 106/249 (42%), Gaps = 3/249 (1%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 R + ++ V L + G K + V + +L P + IEN P Sbjct: 16 YRARRPQQLRAVPVAQTTLITVESGIKRVVCGGQGWQVQAGEWLLLPALAQVQIENRPGN 75 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 G YLA L L + + + L LP + + W+ R Sbjct: 76 GGYLARCLPLDDEWLAALPALTDRLPASGGPAICCLPPDACIQEAWQHWCAGQQRQRPGP 135 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 +Q + +LL++ + LL + + L R LL ++ A +++R L +S S Sbjct: 136 VQRQRMLELLLAICLAGGGRGLLRGAAE-LAPRVNRLLGTDLT--LGAAELSRRLAMSES 192 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL R LA EG S + + + RL AL+ +QT+ PI ++A GY SRF+ RF RF Sbjct: 193 TLRRHLADEGHSLRELREHCRLERALALVQTSSLPIGQVAEACGYASASRFSARFRTRFG 252 Query: 254 ITPREIRKA 262 TPR +R A Sbjct: 253 CTPRSLRAA 261 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 9/263 (3%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF 65 K+ +++ R + V L P++ +I G K + W+ TL +D + ++L + Sbjct: 6 KSLIQLAYYRGVNTQALRNVAILTPSIIQITTGSKRLYWQETTLDIDAHSLLLCRANHAL 65 Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNP------ELIYCW 119 + EN P+AG + + + ++ +++++ T +P L + Sbjct: 66 HFENLPQAGQFSSRQFCFSLP---PTSEMLSLSERNGTTTPHLTLHHPVVRCDKALNHTL 122 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKW 179 L ST+ G L V HL+ + QS + + +P Sbjct: 123 NLLAGLPLDELSTETLTFWLYGFYQQLAERGVLHLMFTPQGQSFEQKLSEFIAQQPSKDH 182 Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 ++ IS +TL RRL EG ++ +L VRL++AL+ +Q + +E++ GY+ Sbjct: 183 QIEDACQHFAISKATLIRRLKEEGTQYREVLSKVRLSHALNLMQQGHRKTAELSLMCGYQ 242 Query: 240 CPSRFTERFHNRFNITPREIRKA 262 P +F++RF RF ++PRE K Sbjct: 243 SPDKFSQRFRQRFGLSPREYCKT 265 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 203 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 5/256 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L+ + HK + + P + R+ G+K + + LT Q +L G F + Sbjct: 13 LETGSVLQHKKLSFAQSQFAQPMIVRVLHGRKTLRYAGGELTATTGQWLLIAGGQSFDVL 72 Query: 69 NYPEAGL-YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P+A Y +E L L + + F + + + + L + + ++ V Sbjct: 73 NEPDAAQGYRSEWLMLGDEWVAQFFAQHPSRETLD--LARVLRPDAAWDEAFLRVVQGVQ 130 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + M +L L + +S Q L + L+ + W VA+ Sbjct: 131 TRLPETVLAARTMELLAWLA--QAGAVFNPHSAQRLSKQIRQLIAQDMAASWQIADVAQR 188 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L +S +TL RRLA+EG SF+ +L ++++ AL+ +QT+ ++++A GY+ P+RF + Sbjct: 189 LGMSEATLRRRLANEGASFRELLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAAK 248 Query: 248 FHNRFNITPREIRKAS 263 F F TP ++RKA+ Sbjct: 249 FRAHFGCTPSDVRKAA 264 >UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=2 Tax=Photobacterium RepID=Q1ZVK9_PHOAS Length = 259 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 5/255 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 +K+ ++ + V + P++ I+QG K ++W+ + ++N +L Sbjct: 5 IKLNYYNGNQPQHLRNVPIIYPSIFWIQQGNKQLHWQNEWIPFNSNNWLLAHGHKSLTFI 64 Query: 69 NYPEAGLYLAEMLYLPI-DLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P + + L I E Q+ D ++ + + Y W+ + T Sbjct: 65 NNPNQTQFFSTQLSFLIRPTDEQIQR---SQDIQKDGLTPEYSLDGTAKYLWQSIITM-P 120 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + +Q+H+ + L + H L S S + +P + V + Sbjct: 121 KDIKPNVQKHIVNALFEHLANSGYLHQLFSMRNLSWRDKLTQYFNDDPKANHSIESVCDH 180 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 +S STL RRL E F+ +L ++R+ ALS +QT E+A GYK +RF +R Sbjct: 181 FGLSKSTLIRRLKDENTQFRDVLAELRMGYALSLLQTKPYSQIELAHLCGYKSEARFAQR 240 Query: 248 FHNRFNITPREIRKA 262 F ++F ++ ++ +K Sbjct: 241 FQHQFGLSLKQYQKT 255 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 197 bits (500), Expect = 4e-49, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 7/252 (2%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 R + +H V + P L + +G KV++ + L + + IL P G E N PE Sbjct: 24 YRCLQPQNLHGVPFIDPCLIIVLRGAKVLSLQPE-LACRSGEFILAPAGIELQFMNLPE- 81 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 G Y+A ++ +E+ V+ + + L Q + + Sbjct: 82 GEYIAVVIGFCASDLEAI----PVSAPPDRDGAAIARVDRTLAEFLNQWINWIDVS-PPE 136 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 + + L LL S S S + +L+ EP W+ +++R L +S S Sbjct: 137 LWALRRKELAHLLYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSES 196 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL RRL SE F+ +L+ VRL L QTT+ PI+ IA + GY+ SRFTERF RF Sbjct: 197 TLRRRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERFKQRFG 256 Query: 254 ITPREIRKASRE 265 +TP E+R+ E Sbjct: 257 MTPSELRQTRLE 268 >UniRef50_B0TKQ1 Transcriptional regulator, AraC family n=5 Tax=Gammaproteobacteria RepID=B0TKQ1_SHEHH Length = 269 Score = 196 bits (498), Expect = 8e-49, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 103/262 (39%), Gaps = 8/262 (3%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 ++I+ K + V P++ + G K + W+ TLT D N +L E Sbjct: 5 VQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQELTFV 64 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNK--TSFFLPQNPELIYCWEQLKTSV 126 N P + + L E K + + L + L + + QL Sbjct: 65 NEPYQNRFQSVQLSFLSQPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQLVAMS 124 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 + S +Q+ L L V L +L + L ++P T Sbjct: 125 EQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLTLREKVSRYLSADPSASHTIELTCS 184 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV------KPISEIARENGYKC 240 + +S +TL RRL EG SF+ IL VR+ +A+ +Q+ E+A GY+ Sbjct: 185 HFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRCGYQS 244 Query: 241 PSRFTERFHNRFNITPREIRKA 262 +RF++RF ++F I+ ++ K Sbjct: 245 EARFSQRFKSQFGISLKQYMKT 266 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 194 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 115/258 (44%), Gaps = 5/258 (1%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 T LK++ + V P++ ++ G K + T +D +L + Sbjct: 4 TLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQDLS 63 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFF--LPQNPELIYCWEQLKT 124 N P + + + L ++ + + R + + + L Y + L Sbjct: 64 FINKPAKDHFYSVQICF---LFPPTPEMIEESKENRRRHEHLNAIKVSSTLAYGFSLLIE 120 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 S+ S+ +Q+H L H+L S S SL ++ +P + ++V Sbjct: 121 MSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFSKDPAENYQLDEV 180 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 + +S +TL RRL +G +F+++L +VR+++ALS +Q + ++A + GY+ +RF Sbjct: 181 SHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRF 240 Query: 245 TERFHNRFNITPREIRKA 262 ++RFH +F ITP++ K Sbjct: 241 SQRFHQQFGITPKQYMKT 258 >UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 Tax=Vibrio RepID=C9NYZ8_9VIBR Length = 261 Score = 193 bits (490), Expect = 6e-48, Method: Composition-based stats. Identities = 62/255 (24%), Positives = 110/255 (43%), Gaps = 2/255 (0%) Query: 8 NLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYI 67 +I E R + V P++ +I G K + W+ ++T+ + +IL + Sbjct: 4 QFQITEFRAQHLQALRNVTIHSPSIIQILSGNKRLFWQEESVTLTPDSLILCSAASSWNF 63 Query: 68 ENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P+ G +L+ + L + + S+ L P + L T Sbjct: 64 ANLPQKGPFLSRVFSF-NYLPSQEMLGLSENAAHSSSPSYCLVDKP-IRDTLNTLATVNL 121 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + S + Q++ M + L H + S S+ SL L P + + VA + Sbjct: 122 KAISPRTQQYWLMPLYQQLAEQGALHKIFSSSQASLTQTITQYLSIAPADEHSLEGVADH 181 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 +S +TL R+L EG ++ +L VRL++AL +Q ++A+ GY+ RF +R Sbjct: 182 FGMSRATLIRKLKQEGSQYRQLLAQVRLSHALQLMQKHQYDGYQLAQMCGYQSEERFRQR 241 Query: 248 FHNRFNITPREIRKA 262 F RF +TPRE ++ Sbjct: 242 FRERFGVTPREYQRT 256 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 192 bits (489), Expect = 7e-48, Method: Composition-based stats. Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 5/253 (1%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 IR +R+ P L +++ G K+I L ++ L P +EN P+A Sbjct: 14 IRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLPDYQPLTMENIPKA 73 Query: 74 GL-YLAEMLYLPIDLIE-SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS-VSRGF 130 Y L +P L E ++ ++ ++ R + E ++ Sbjct: 74 PRNYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARL 133 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 I + M ++ + +L L R ++ S+P WT AR + Sbjct: 134 PGAIAKARLMELVTWFALCGA--VLGEGQSPRLEDRLRQMIESDPAFDWTLAHAARSFNM 191 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S +TL RRLA+E F IL D R+N AL I TT P++++A E GY PS+F+ RF Sbjct: 192 SEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYDSPSQFSARFKE 251 Query: 251 RFNITPREIRKAS 263 RF ++PR +R S Sbjct: 252 RFGVSPRHVRSGS 264 >UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKX1_ALISL Length = 259 Score = 192 bits (489), Expect = 8e-48, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 104/255 (40%), Gaps = 10/255 (3%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 K + + ++ V + P + + G K I+ + + N IL + E Sbjct: 2 FKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNFE 61 Query: 69 NYPEAGLYLA-EMLYLPIDLIESFQ---KLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 N P GL+ + ++++ +E F+ K + V+ K + L +L++ + + Sbjct: 62 NIPINGLFFSKQIIFFKPPKVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVILK 121 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 +++ + G+ L L + +L S+ S + Y +L + V Sbjct: 122 NIN------TRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYEVLEKMQPSDHKIENV 175 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 L +S +TL RRL G F+ I+ VR+N AL +Q + +I+ GY+ Sbjct: 176 CSILGVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELL 235 Query: 245 TERFHNRFNITPREI 259 F F ITP+E Sbjct: 236 VVYFKEEFGITPKEY 250 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 190 bits (482), Expect = 5e-47, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 6/259 (2%) Query: 10 KIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIEN 69 I H + V P L + +G K+I WE + +I + G I N Sbjct: 13 SAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIIN 72 Query: 70 -YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP-QNPELIYCWEQLKTSVS 127 L+ ++ L+ LI +F T D + PE I + + S+S Sbjct: 73 GLSNDDLFFSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEFINTFGNIFNSIS 132 Query: 128 RG--FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 T I +H + +LL L V +L L + L S+P W+A++VA Sbjct: 133 ENSDIPTVIIKHRMLELLLWLAQRDVKFIL--NDGNGLSEKVRRCLASDPHKIWSASEVA 190 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 ++ +S L R+LA+E + + ++ DVR+ +AL +Q T PIS IA + GY+ SRF Sbjct: 191 EHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFA 250 Query: 246 ERFHNRFNITPREIRKASR 264 ERF RF P IR R Sbjct: 251 ERFRKRFGFAPTAIRGHHR 269 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 125/258 (48%), Gaps = 7/258 (2%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 + + + R+ P L I+ G+K + W LT+ +++L G F + N Sbjct: 15 LGSVIQQRKLLYTRMAVDEPTLLYIQVGQKTLRWRGQELTIQAGEMVLLAAGQTFDVLNN 74 Query: 71 PEA--GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 P+A G Y A + L +++ F L+ V ++ + L ++ ++ ++ Sbjct: 75 PDAKLGFYQAGWIALEQRVVDEFADLFGVETYVQELAK--IQPLAPLKAHFDVVRQALEN 132 Query: 129 GFSTKIQEHLAM-GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + ++ L + +L L H++ + + K +L+ + ++ S +WTA +AR Sbjct: 133 DEAPELVLKLKLFELLAWLKAEHLS--FVPHEKHNLLRQIRKMIASNTAFEWTAETIARQ 190 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L++S ++L R L +F+ +L DVR++ AL+ +Q T ++ IA E GY PSRFT R Sbjct: 191 LHLSETSLRRALQKSDTTFREVLTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVR 250 Query: 248 FHNRFNITPREIRKASRE 265 F RF P +IR+ + Sbjct: 251 FKQRFGFLPSDIRENLSQ 268 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 106/250 (42%), Gaps = 17/250 (6%) Query: 19 HHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLA 78 + V + P L + G K ++ LT Q + + N P Y A Sbjct: 28 EQRLLNVPIVKPMLIAVLSGDKQLD-GEQQLTCSAGQFVFLSNSPTTSMRNIPIGSQYCA 86 Query: 79 EMLYLPIDLIE-----SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 ++ I E Q +I ++ S L Q E W + K Sbjct: 87 LLIEFEISDFEGIKLNQTQSYGLCFGEICSRLSACLAQFVE----WAHIAPPAMWAMRRK 142 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 H +L LG +++ L+ S+ SL ++ + ++ ++ T + + +S S Sbjct: 143 EIVH----LLFQLGHSNIAGLVHSH---SLSNQIHLVIANDQELDVTIESLCQRFAMSES 195 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL R+L +EG++ Q I D VRL L +Q+T K I IA GY+ SRF+ERF RF Sbjct: 196 TLRRKLKAEGITLQDIKDQVRLGQGLHLLQSTRKSIGMIANVCGYQSQSRFSERFKYRFG 255 Query: 254 ITPREIRKAS 263 +TP ++RK Sbjct: 256 LTPSQLRKTQ 265 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 107/262 (40%), Gaps = 7/262 (2%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 ++ NL ++ +I V P L + G K + +T + I Sbjct: 12 LVVHSNLNLPFAVYSAYQEQKITNVPISKPLLIIVLSGFKELG-KTENIKCVAGSFIFLA 70 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 + N P+ Y A ++ E F L T +N L NP L Sbjct: 71 NSSSIDMRNIPDQEEYFALLIEFD---FEDFNDLPQNTGTSQNYVQGQL--NPLLESALH 125 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 Q S + +L + + + +SL R L+ T+ T Sbjct: 126 QFID-FSLVAPPSAFKFRKRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELT 184 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 A +A L++S STL R+L SEG S Q I + VRL + L IQTT I IA E GY+ Sbjct: 185 AEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQS 244 Query: 241 PSRFTERFHNRFNITPREIRKA 262 SRFTE+F N F ITPRE+RK Sbjct: 245 QSRFTEQFKNLFGITPRELRKT 266 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 96/241 (39%), Gaps = 8/241 (3%) Query: 31 ALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA--GLYLAEMLYLPIDLI 88 L + +G+K + W + P G E + N P+A G+Y A + L+ Sbjct: 5 GLVIVIEGRKEVLWGAECNIYHAGDAFVLPAGAEVDVVNEPDADTGVYRALFVRFSRALV 64 Query: 89 ESFQKLYTVT----DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 +L+ + + + +I+ E L + + S ++ +H + VLL Sbjct: 65 IEAARLWPQLIVREVPLGSSITISPTLCSAIIHSGEVLAGPLDQ--SRRVVDHRLLEVLL 122 Query: 145 SLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGV 204 L L+ Y S+ L+ W+ VA L +S +TL RRL E Sbjct: 123 ILAEQGALPLMPKYVDGSVTEAVRLLIRHRLDHAWSTAAVAASLSMSEATLRRRLRDENQ 182 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 S +++L R+ A + ++E GY S F+ RF + F P +R+A + Sbjct: 183 SLRALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQDAFGQAPSTVRRARK 242 Query: 265 E 265 + Sbjct: 243 K 243 >UniRef50_D1E8F4 AraC protein n=21 Tax=Neisseria RepID=D1E8F4_NEIGO Length = 239 Score = 173 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 6/226 (2%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE- 72 I H V P + +R+G K + W L + + + G + N P+ Sbjct: 18 IVQHHTALYRSVAVYEPTVVIVRRGCKKLRWAGRELRIAAGEAVGLAGGQTLDVINIPDS 77 Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-FS 131 GLY A+ + + +E F Y + + LP + ++ ++ Sbjct: 78 DGLYQAQWIAFEQETVERFAAQYGTAQAVCDAVK--LPHPGRMGAAFDYAAAVLADEEVP 135 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 E GVL L + + + Y +L+ + L+ ++ W++ +A+ L S Sbjct: 136 HNAAEAALCGVLAWLQHDGIGFAV--YGGVNLMRQIRKLITADMAADWSSAMLAQRLNCS 193 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 + L RRLA + +F+++L DVR+ AL+ +Q T +++IA G Sbjct: 194 EAALRRRLARQDTNFRTLLTDVRMMRALTLLQVTQWSVAQIAGAVG 239 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 5/256 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L +I + + V + + G K + + ++ + P G ++ + Sbjct: 27 LLTHQIIARNQYVLRTVVMHADLIGLVVSGTKQLLAPQGRSDFASGELFILPRGTQWDVV 86 Query: 69 NYPE-AGLYLAEMLYLPIDLIESFQK---LYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 N P G Y+A+++ L + I F + + + +R+ Sbjct: 87 NDPAPQGRYVAQVINLQPETITRFYQSFGQFAALEPVRSAARVAETPASIKTAFLRAADA 146 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 ST + EH + V L L H +L + R L+ P W+A++V Sbjct: 147 LSDANCSTTLSEHRVLEV-LLLLAEHAGVVLAPPGALNWSERVRRLVAQRPYDHWSASRV 205 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 A+ L + STL+RRLA EG + + + D RL A+ +Q++ +P++ IA + GY+ S+F Sbjct: 206 AQALSTTASTLNRRLAQEGCTITTCVRDTRLETAMVLLQSSERPVAAIALDVGYESHSKF 265 Query: 245 TERFHNRFNITPREIR 260 T F RF + P +R Sbjct: 266 TAAFRRRFGVVPSALR 281 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 5/234 (2%) Query: 29 MPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLI 88 P +++GKK + + + + G ++N + GL+ A+ + ++I Sbjct: 38 YPTFILVKRGKKTLYSGERRVALLPGDAVAIAAGAACDVQNETDEGLFEADWIVCARNII 97 Query: 89 ESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV--SRGFSTKIQEHLAMGVLLSL 146 + + ++++ S E +E+ ++ + + EH +L L Sbjct: 98 CGIEPRFPKHKKVQSIVSLQ-GLGKEFALTFERGLQAIKEPQATPDLVAEHRVCELLQWL 156 Query: 147 GVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSF 206 + S + + + L+ +EP KW++ +A L +S +TL R+LA EG +F Sbjct: 157 ANAGY--VFRSNERADIQRKVRLLIGAEPDKKWSSQDIAESLALSEATLRRKLAKEGNAF 214 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 IL DVR++ ALS +Q+T I+ IA + GY+ SRF+ RF RF +P IR Sbjct: 215 SEILVDVRMSLALSLLQSTDAAIASIAYQVGYESASRFSVRFKQRFGFSPTAIR 268 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 66/257 (25%), Positives = 108/257 (42%), Gaps = 6/257 (2%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQG-KKVINWETHTLTVDNNQIILFPCGYEF 65 + L I I + L I +G KKVI L + +FP G Sbjct: 6 SGLSIHLITQATRATFTDMYFHQTFLSFIHKGTKKVICPHNGELIGSEGDLFIFPPGSII 65 Query: 66 YIENYP-EAGLYLAEMLYLPIDLIES-FQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLK 123 +EN P Y A+ + + LI++ + + PE + + + Sbjct: 66 SLENRPLVDADYQADGVSIANTLIDAVYAGQPAAPAATGIQVVRGKEHKPEDVLALMK-E 124 Query: 124 TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANK 183 T + +++H + L+ L H+ L + +S+ +L+ ++ W A Sbjct: 125 TLANTSLPEALRQHRLLEPLIWL--RHIGVNLSKPDTDNPLSKVRSLIETDLSYAWRATD 182 Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA + +S +T R LA G F +L RL L+ +Q+T +PIS IA + G+ PS Sbjct: 183 VASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQSTHEPISNIALDCGFNTPSH 242 Query: 244 FTERFHNRFNITPREIR 260 F+E F RF I P+EIR Sbjct: 243 FSEAFKKRFGIRPKEIR 259 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 168 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 5/247 (2%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 I + H V+ P + +G+K + +L I+L + N P+ Sbjct: 30 ITARREHGASSVEIPQPQFAILLEGRKQVRTAHQSLEFVPGDILLLTQRCRIDVVNTPDP 89 Query: 74 G--LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 G YL+ ++ L +++ + + L++ LP E Q + S+ G Sbjct: 90 GTGRYLSAIVPLCAEVLAAARTLWSEALPSAGPVMGRLPLT-EHGAVLRQWRQSLQDGRY 148 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 + + LA VL H N LL SL + + + +EP W + V +S Sbjct: 149 SDARLALASLVLTLCRQGHGNLLL--PQAPSLGEQIRDRIAAEPARDWQSRDVEEQFALS 206 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 +TL RRLA+E S + +L + RL + ++ + TT P+ +A GY+ + F++RF + Sbjct: 207 GATLRRRLAAERTSLRQLLTEARLAHGMTLLYTTDLPLKTVAARAGYRSAASFSKRFAEQ 266 Query: 252 FNITPRE 258 + + P + Sbjct: 267 YGLAPTD 273 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 122/271 (45%), Gaps = 6/271 (2%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWE-THTLTVDNNQIILF 59 M++ ++I + R L + QG + + T + + L+ Sbjct: 1 MVSYFMPTIEIIRFNHFAPRKQERYPVTKNGLFFVEQGSLTVTQDSGATSELTAGEFALY 60 Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP---QNPELI 116 G + P + A L I L++ F+ +Y ++ +T F Q+ + Sbjct: 61 NSGQLKEAQAQPGENGFSALALVFSITLLQKFRNVYPLSKIPAQQTDTFFKFSGQHKRID 120 Query: 117 YCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNH--VNHLLLSYSKQSLISRCYNLLLSE 174 + L V R +++ QEHLA+ ++ + + ++++ ++ S + + S Sbjct: 121 QLKDMLIEEVERKQNSQAQEHLALALMALMVEKQPELLNMIIRATQFSETQKIIQFIESN 180 Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 + + +A+++ +S +TL RRLA+E +SF +L R+++A + ++ T K I+ IA Sbjct: 181 IEEEISLETLAKHMGMSTATLKRRLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAY 240 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKASRE 265 E+G+K + F+ F +TP+E R ++ Sbjct: 241 ESGFKSAAHFSTAFKAVQQMTPKEFRAKVQQ 271 >UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5E051_VIBF1 Length = 255 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 58/252 (23%), Positives = 101/252 (40%), Gaps = 6/252 (2%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 K + ++ V P + I G K I+ + + T+ ++ I + E Sbjct: 2 FKAFTYEGNNVQKLKNVVITNPCIIWIVCGVKNISVDGYKYTLKKDEAIFLSGNSKISFE 61 Query: 69 NYPEAGLYLAEMLYL-PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N+ E G ++++ + IES +K + R+ + + +L E L + S Sbjct: 62 NFTEDGFFISKQITFIRKPNIESVRKNKFELSKYRS-----VKLDSQLKMTMEFLHQADS 116 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + K + G+ L L +L + S + Y +L + + Sbjct: 117 ILNNIKTRSMWLDGLYLLLLDYDYLEMLFRPDEISFNEKVYEILDKMDPKEHRIESICLV 176 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L IS +TL RRL G F+ I+ VR+N AL IQ P+ EI+ GY+ F Sbjct: 177 LNISKATLIRRLKKSGTQFKKIVRQVRMNKALFLIQKRTIPLDEISFSCGYQSMELFNLY 236 Query: 248 FHNRFNITPREI 259 F + F I+P+ Sbjct: 237 FESEFGISPKNY 248 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 162 bits (411), Expect = 9e-39, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 5/249 (2%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 K I V + P L + G K + + N + + G + + N E+ Sbjct: 23 YTSLKEQTILNVPIVKPLLVFVLDGCKKLGANGD-VRCVNGRFVFLSNGTKIDMRNIAES 81 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 Y A ++ F L+ I N +FL + L+ Q + + Sbjct: 82 DEYFALLIEFD---YTDFNCLHQKAVNI-NAAPYFLGEITPLLEGTLQQFIEWAAIAPAE 137 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 + +L +L + SL ++ + ++ ++ WT + + + L +S S Sbjct: 138 LWHIRRQELLQTLFHLGYTQVCSIAGAPSLSAKVHAIISTDLTYDWTMDVITQKLAMSES 197 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 T+ R+L +EG S Q++ D RL+ L +Q+T +PI+ IA + GY SRFT +F F Sbjct: 198 TIRRKLTAEGTSLQAVKDSARLSFGLHQVQSTFQPINHIAEQCGYLSQSRFTNKFKQLFG 257 Query: 254 ITPREIRKA 262 +TP +RK Sbjct: 258 VTPTALRKT 266 >UniRef50_B9JBF3 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JBF3_AGRRK Length = 270 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 10/252 (3%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 M A GK+ + + I ++ + +G K + L + +++ P Sbjct: 24 MPADGKSYSTLFTFVTRQRERIAGSAFAHVSIVVLIEGYKEVLSMGRHLRLPAGTVLVLP 83 Query: 61 CGYEFYIENYP--EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC 118 G+ + N P ++G+Y A + P +L+ ++ R + LP +P L Sbjct: 84 AGWRGDVVNDPNPQSGVYRAIFISFPDELV---RRAIGAFPPARTASQIDLPLDPVLAAA 140 Query: 119 WEQLKTSVSRG-FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT 177 ++ G ++ EH M VL+ LG+ L S ++ L+ +P Sbjct: 141 IHHAGDGIASGELPAELIEHRLMEVLMVLGMRGA----LPASPETTAEAVRALVRWQPDR 196 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 WTA+ +A L S +TL RRL+ EG S + +L R+ A + + + E A G Sbjct: 197 AWTADLIAVELGTSNATLRRRLSREGSSLRDVLASERVALATTLLAEDGLSLREAALATG 256 Query: 238 YKCPSRFTERFH 249 Y+ P RF ER Sbjct: 257 YRSPRRFAERLR 268 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 18/253 (7%) Query: 30 PALCRIRQGKKVINW----ETHTLTVDNNQIILFPCGYEFYIEN--YPEAGLYLAEMLYL 83 P + I G K I L QI+L P G + N PE G Y + + L Sbjct: 61 PLVVLILDGAKRIFLDGPDGNTRLVAREGQILLVPQGIPLELVNEPDPERGAYRSFTIEL 120 Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQN-------PELIYCWEQLKTSVSRGFSTKIQE 136 ++ E Q+ Y R F + P + + T + G + E Sbjct: 121 LSEVDERLQRRYPTLCVQRGLGGFEADRPHLLRSAMPSIQALIHLVNTLLLPGAHALLIE 180 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLIS-----RCYNLLLSEPGTKWTANKVARYLYIS 191 H ++L+L + H L + + S ++ L+ +P W A +VAR L +S Sbjct: 181 HRLEDLILTLLLQHREQLDEARAASSTLALDPTLAVRALVRRDPARPWAAPEVARALGVS 240 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 +TL RRL ++GVSF+++L RL+ A +++ + E+A GY SRF E+F Sbjct: 241 DATLRRRLGAKGVSFRALLWKERLDLAKGLLRSGRHGVLEVATACGYDSASRFAEQFRRS 300 Query: 252 FNITPREIRKASR 264 ++P E R R Sbjct: 301 EGVSPSEYRARHR 313 >UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=Dickeya dadantii Ech703 RepID=C6CBK7_DICDC Length = 279 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 113/250 (45%), Gaps = 2/250 (0%) Query: 13 EIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 ++ + + + V + + G K + ++ + P G ++ + N P Sbjct: 29 QVVARRQYLLRTVVMRADLIGLVVSGNKQLVTPEGGNVFVPGELFVLPRGTQWDVINDPA 88 Query: 73 -AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFF-LPQNPELIYCWEQLKTSVSRGF 130 G Y+A +L L ++ F + ++ + SF + + + + ++ Sbjct: 89 PQGNYVARILTLQPEIAARFYQRFSQFALLGPVRSFARVVGRNGIQEAFLRAVAALETAG 148 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 S+ + +L L +L S S + L+ P W+A VA L + Sbjct: 149 SSAALREHRVLEVLLLLAEQAGVVLAPPSALSWTEKVQRLVAQRPHADWSAAGVAAALAV 208 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 SVSTL+RRLA EGV+ + + D+RL+ AL+ +Q++ +P++ IA++ GY S+FT F Sbjct: 209 SVSTLNRRLAQEGVTIAACVRDIRLDAALTLLQSSDRPVAVIAQDVGYVSHSKFTAAFRR 268 Query: 251 RFNITPREIR 260 RF + P +R Sbjct: 269 RFGVVPSALR 278 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 6/203 (2%) Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 ++EN +G LA ++ +F++L SF L P ++ + LK Sbjct: 34 FVENANISGFRLAACFIEKLNQQLNFRELCDGVFSGNVAVSFTLR--PGIVDIYSALKAM 91 Query: 126 VSRGFSTKIQEHLA----MGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 V +G + + L M + L + + S SL SR L+ + WT Sbjct: 92 VEKGCGNRSNDELLDINSMLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTL 151 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 ++A+ +Y+S ST+ R+L EG +F +L RL+ A + + +S IA G+K Sbjct: 152 KEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHA 211 Query: 242 SRFTERFHNRFNITPREIRKASR 264 S F F + TP RK ++ Sbjct: 212 SYFGACFRKEYGATPLAYRKQAQ 234 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 59/261 (22%), Positives = 108/261 (41%), Gaps = 6/261 (2%) Query: 8 NLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINW-ETHTLTVDNNQIILFPCGYEFY 66 N++I + R L + +G +++ + L+ Sbjct: 3 NIEIIRFNHFTARKSERYTATHNGLYVVEEGALLVHQPNGEQFELKAGDFTLYNSADLSS 62 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVT---DQIRNKTSFFLPQNPELIYCWEQLK 123 E P + A L +L F+K + + + R F + E+ + L Sbjct: 63 AEAIPSEKGFKALALVFNPNLFCDFKKAHPMLRSKTEERRFYPFSAQASSEVAQLKDTLV 122 Query: 124 TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLI--SRCYNLLLSEPGTKWTA 181 SR Q H+AM +L + N L + SL + + + T Sbjct: 123 NLASRNAPDYTQGHIAMALLSLMVEVEPNILSIIDDASSLSDSQKAIKYIENNIEKDITL 182 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +A ++ +S++TL RRLA+E +SF IL R+N A + ++ + K I+EIA E+G+K Sbjct: 183 EGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFAATQLRMSEKSITEIAFESGFKSA 242 Query: 242 SRFTERFHNRFNITPREIRKA 262 + F+ F + +N+TP++ R Sbjct: 243 AHFSTAFKSVYNMTPKDFRNQ 263 >UniRef50_Q7MC65 AraC-type DNA-binding domain-containing protein n=16 Tax=Gammaproteobacteria RepID=Q7MC65_VIBVY Length = 253 Score = 152 bits (385), Expect = 9e-36, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 96/253 (37%), Gaps = 27/253 (10%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 ++++ H H + H++ QG I ++ V ++ G + + Sbjct: 27 TKQLQSHTHEDYHQLVLP-------LQGSIEITMPHYSGKVVVGDCVVICAGRQHAFKAD 79 Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF 130 EA +A++L LP+ L ES ++ +T +++ SF QL+ V G Sbjct: 80 EEARFIVADLLSLPVHLYESETPVFRITPPLQSFLSFVEK----------QLEFQVDSGI 129 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 I + +M + V L + + ++ T +A + Sbjct: 130 EASILDVFSMLLTQQALRQVVEPRLRT---------VQSYIVEHLDQPLTIELLANRACL 180 Query: 191 SVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 S + +R G S + +R+ A + + T P+ +A + GY S F+ RF Sbjct: 181 SPTQFKKRFKESVGESALQYITALRMEKAKALLTHTDLPVQRVAEQVGYTDLSAFSRRFS 240 Query: 250 NRFNITPREIRKA 262 F ++PR +A Sbjct: 241 RHFGLSPRAFCRA 253 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 118/276 (42%), Gaps = 14/276 (5%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGY 63 R +K + I H + + ++ G + ++T+ +N ++ P Sbjct: 25 RSSFGMKYKRILSQSHIVLKEFYVDHHLIVNLKNGDGDVCINGQSVTISSNATLVIPKFS 84 Query: 64 EFY-IENYPE-AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP-----QNPELI 116 N + ++L + + I K Q T+ +P + P+++ Sbjct: 85 HISCTINQKDCHKNIELQLLMVGEETIAQSFKYMASLKQPNTPTANCMPVYHLNETPDVV 144 Query: 117 YC-WEQLKTSVSRGFSTKIQEHLAMG----VLLSLGVNHVNHL-LLSYSKQSLISR-CYN 169 ++ + S+ T++++ +LL+L ++ + ++ R Sbjct: 145 EQNFQLFQQSLPAVADTRLEKTFLTQSLFFILLALNEAGIDVFNVYRFNYDEPKERTIAR 204 Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 L+ +P KW+ + +A+ L+ + STL R LA EGVSF +L DVR+ AL+ + + I Sbjct: 205 LITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSI 264 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 S+I +G+ + F + F ++ ITP + R SRE Sbjct: 265 SQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE 300 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 13/237 (5%) Query: 42 INWETHTLTVDNNQIILFPCGYEFY--IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTD 99 ++ H + + NN + P I ++L + + I K + Sbjct: 34 VHINGHAIELKNNSTFVVPKFSHISCSINQLNNQENIELQLLMIDEESITEAFKYISALK 93 Query: 100 QIRNKTSFFLP----QNPELIY----CWEQLKTSV-SRGFSTKIQEHLAMGVLLSLGVNH 150 Q T+ P P ++ + +L S+ + + +L++L Sbjct: 94 QPTFPTASCSPVYTIPTPAIVDQNFVLFNKLLPSICGSSMEKTLLSQCLVFILMALNEAG 153 Query: 151 VNHL-LLSYSKQSLISR-CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQS 208 ++ + ++ R L+ +P KW+ + +A+ L+ + STL R LA EGVSF Sbjct: 154 IDVFNVYRFNYDEPKERTIARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQ 213 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +L DVR+ AL+ + + IS+I+ +G+ + F + F ++ ITP + R SR+ Sbjct: 214 LLLDVRMGLALNYLTFSNYSISQISNRSGFGSAAYFCDAFKRKYGITPSQFRTTSRQ 270 >UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZUP8_PHOAS Length = 292 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 31/267 (11%) Query: 17 HKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE--NYPEAG 74 H H E V L R QGK + +++N+++L G E N E Sbjct: 38 HAHQEFELV------LHRNFQGKSRV--AHFEGQIEHNELLLIGPGVAHSFESINSDEKN 89 Query: 75 LYLAEMLYLPID----LIESFQKLYTVTDQIR--NKTSFFLPQNPELIYCWEQLKTSVSR 128 A +++ + LI S +L T+ IR NK F Q E +Y + L + Sbjct: 90 PCEAHVIWFSKEWIANLIYSCAELRTLMPIIRDANKGVRFSTQTAEKVY--QHLNSF--D 145 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ----------SLISRCYNLLLSEPGTK 178 + Q + + +L L + + LLSY++ S I++ + + Sbjct: 146 DLTPIGQLAVLIQILDELSADQSHTTLLSYAQSEEKEKPNNDFSKIAQVCKYIDKHYSSD 205 Query: 179 WTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 T K+A Y+Y+S +T+HR S+ S L +RLN+A + + TT++PIS IA G Sbjct: 206 ITLKKLADYMYVSENTVHRWFIQHFNESYISYLTKLRLNHASNLLITTLQPISLIAESVG 265 Query: 238 YKCPSRFTERFHNRFNITPREIRKASR 264 Y S F F I+P RK + Sbjct: 266 YTNRSNFNRSFKKYKGISPSLYRKQFK 292 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 1/118 (0%) Query: 145 SLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 + +N L + ++ L R ++L + + VA YL++S TL R+LA+EG Sbjct: 220 QIAINQCEAELSALGERRRLAMRVRDILSNSEQHYLSIENVAEYLHMSDRTLKRQLAAEG 279 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 SF +++D+VR +A S + T + +IA E GY + F+ F +P RK Sbjct: 280 TSFSTLVDEVRYRHATSLLSRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 337 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 109/248 (43%), Gaps = 8/248 (3%) Query: 19 HHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQII-LFPCGYEFYIENYP--EAGL 75 + PAL + G+ + +++ ++ + G + YP EA Sbjct: 40 QQKASSFFFYEPALLLVLSGRIEFSHGAKPYQLNSPTLLGVIDQGVDADYIKYPATEAAA 99 Query: 76 YLAEMLYLPIDLIESFQKLYT---VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 + + + L D++++F + + V + + + + + L + S Sbjct: 100 FRSLFISLNADVLDAFYQQFPQYLVGTRKNAQITTVELLSHQQESIRNLLAMLENPQISD 159 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 +LL L ++ LL +Q + R LL P WTA L +S Sbjct: 160 DRVRLRIFDLLLVLAEQNIRFLL--PQQQGIFPRLSKLLREAPDKGWTAKVAGDALAMSE 217 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 STL RRL EGV F+ +L D+R+++AL IQTT ++++A GYK SRFTERF RF Sbjct: 218 STLRRRLRQEGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADACGYKSVSRFTERFRYRF 277 Query: 253 NITPREIR 260 +P ++R Sbjct: 278 GNSPAQLR 285 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 11/175 (6%) Query: 89 ESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGV 148 K V Q+ + +F L++ W+ L+ V + +++EH V Sbjct: 187 YPLHKNVVVYKQLLCEKVYFEQAQNSLVFAWQDLQQPVLTA-NAQLREHFEQLV------ 239 Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 LL+ Q + + ++L++P + ++VA L+++ +L R+L EG +F Sbjct: 240 ---KEDLLTKKPQEWVKKVRQVILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEGHTFL 296 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 I +D++ A+ ++ T +SE+A GY PS F F TP+E +++ Sbjct: 297 VIANDIQQQRAMHLLRQTQLNVSEVAYMLGYAEPSVFRRAFKRWTGKTPKEYQQS 351 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 68/170 (40%), Gaps = 2/170 (1%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 +++ Q +N + + + L++ V + A + L Sbjct: 162 RRVLIQGPQPKNVEPYKVAFHSPLVFGAPH-DALVFERADMEAALPTANEAMAILHDRFA 220 Query: 152 NHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 L +S+ + R +L P + +A+ L++S TL RRL EG SFQ++L Sbjct: 221 GEYLARFSESRVTHRVRQVLCRILPQGEPKRETLAQALHLSQRTLQRRLQEEGTSFQALL 280 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 DD R A + + E A G+ PS F F F++TP E R Sbjct: 281 DDTRRELAEQYLAQPGMTLLETAYLLGFADPSNFYRAFRRWFDVTPSEYR 330 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 11/153 (7%) Query: 113 PELIYCWE--QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNL 170 P ++ W+ L T + + H LSL + +++ SR Sbjct: 199 PRHMFVWDKTNLNTPLPLANPLAKKAHEKECRELSLRIR---------KQETASSRIVQE 249 Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 + + +AR++ +S TL RRL EG SF++I+ DV+ A+ +QTT PI Sbjct: 250 IEFRRQGVPGFDDLARHMNMSPRTLRRRLKEEGTSFKNIVSDVQKEKAIHLLQTTNLPIQ 309 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +IA E GY+ F F TP + R+++ Sbjct: 310 QIALELGYEDLPNFYRAFKRWTGKTPGDYRQSN 342 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 60/250 (24%), Positives = 104/250 (41%), Gaps = 8/250 (3%) Query: 17 HKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVD-NNQIILFPCGYEFYIENYPE--A 73 + R L + G+ +I + T VD +Q+ L + P Sbjct: 41 RIPQQTTRFHFYEATLLLVLSGQLIILEQDKTTVVDTPSQLCLITPDARADLTKTPGGHD 100 Query: 74 GLYLAEMLYLPIDLIESFQKLYT--VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-F 130 + + L L+ F Y +T R + L + +L + L ++ Sbjct: 101 PAFRSIFLTFSPTLLARFYLRYPEQLTQVYRLRPFTALALDGDLTRTLQHLVEGITGNTL 160 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 + E M +LL L + + + + ++ L+ EP WTA R L + Sbjct: 161 NESRLELRLMDMLLVLSERGYHFGV--PPQPGVSTQLRALISEEPERHWTAQSAGRLLAM 218 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S +TL RRL++E F+ +L + R+ +A+ +QTT + +A GYK +RF+ERF Sbjct: 219 SEATLRRRLSAEQTRFEVLLLETRMQHAMMLVQTTSWSMQRLAEACGYKSSARFSERFKT 278 Query: 251 RFNITPREIR 260 RF +P +IR Sbjct: 279 RFGCSPTKIR 288 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 16/258 (6%) Query: 21 EIHRVKPLMPALCRIRQGKKVINWE-THTLTVDNNQIILFPCGYEFYIENYPEAGLYLAE 79 + V L + G I E T+ +++ I G + Sbjct: 38 NVSNVYVAAFTLVCLHHGHVTITDERGRTIHCVAPGLMVLERNQLINITMQEVDGHLSFD 97 Query: 80 MLYLPIDLIESFQKLY---------TVTDQIRNKTSFFLPQNPE----LIYCWEQLKTSV 126 +L +P +L+ +L R S E L + Q K + Sbjct: 98 VLDIPHELLTIAHELLIEKLQTEHQPGEHPFRIVYSNDFAARKEVFDLLRFTLSQEKKGI 157 Query: 127 SRGFSTKIQEHLAMGVLLS--LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 + A+ +LLS + ++ +K S+ + YNLL +EP +W + V Sbjct: 158 FENEEKENIATYALLLLLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTEPDKQWKLDDV 217 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 + +++S STL R+LA+EG +F + R+N A ++T ++ +A GY S F Sbjct: 218 SSAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYF 277 Query: 245 TERFHNRFNITPREIRKA 262 F +FNITP K+ Sbjct: 278 IACFKRQFNITPSAFMKS 295 >UniRef50_B5J4U5 Transcriptional regulator, AraC family protein n=3 Tax=Rhodobacteraceae RepID=B5J4U5_9RHOB Length = 300 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 64/248 (25%), Positives = 103/248 (41%), Gaps = 15/248 (6%) Query: 26 KPLMPALCRIRQGKKVINWETHTLTVDNNQIIL----FPCGYEFYIENYPEAGLYLAEML 81 P LC I QG K I +LT Q ++ P IE PE Y+A + Sbjct: 51 TVYKPMLCLILQGTKEIGSNDKSLTAHAGQSLIVSHILPVVSRI-IEAGPEQP-YVALVF 108 Query: 82 YLPIDLIESFQK--LYTVTDQIRNKTSFFLPQNPELIYC-----WEQLKTSVSRGFSTKI 134 L + L+ S + + +DQ + S L + + ++Q +T +R F I Sbjct: 109 PLDLSLLRSLASEVVPSFSDQSSDPFSICLCDTDDALEGTMQRYFDQCETQQTRQFIAPI 168 Query: 135 -QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 + + M +LLS + LL S S + + + S K ++A+ +S S Sbjct: 169 TKREIHMRLLLSPHAQILRKLLWHESTASRVFQATENIQSNLADKIIVGELAQSAGMSSS 228 Query: 194 TLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 R + G S D+RL A +Q + IS+IA GY+ ++F+ F +F Sbjct: 229 AFFERFKAVTGTSPLQYQKDLRLLRARGELQASNAKISDIAFGVGYESSAQFSREFSRKF 288 Query: 253 NITPREIR 260 TPR+ R Sbjct: 289 GRTPRQDR 296 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 104/273 (38%), Gaps = 25/273 (9%) Query: 12 EEIRMHKHH-EIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 ++I+ I + L R GK I+ T+ D +++ + Sbjct: 31 QQIKSQTQQVTIKNLYVSSFTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLE 90 Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS-------FFLPQNPELIYCWEQLK 123 G ++L +P + + L Q + F+ P P +E LK Sbjct: 91 EVNGHMDFDILEIPTQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLK 150 Query: 124 TSVS---------RGFSTK--------IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR 166 T+ S + K I L + L + ++LS ++ +L R Sbjct: 151 TAFSCTKDTSKGCSNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIILSSAQITLKER 210 Query: 167 CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 YN++ S P +W VA ++++S STL R+LA EG SF I R+N A ++ Sbjct: 211 VYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGN 270 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREI 259 ++ +A + GY S F + F F TP Sbjct: 271 HNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 39 KKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEML---YLPI---DLIESFQ 92 + +N + ++ + L P ++F ++ L + L LPI +L ++ Sbjct: 139 RISLNLKDGVASLHFDDSALPPALHDFIVQRDMLGALVVVRELLGSPLPIRSVELRQATP 198 Query: 93 KLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVN 152 T + + F Q+ L + + L + R S L+S Sbjct: 199 SDMTPFVEAFGQVPHFGAQHNRLGFSADLLDDPLPRANSQ----------LVSACERQCQ 248 Query: 153 HLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 LL + Q + R LLL PG +VA L++S TL RRL EG SF+++ D Sbjct: 249 MLLARHQWHQGVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQD 308 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +VR A + + EIA GY S F F TP ++ + Sbjct: 309 EVREALADELLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQRGA 360 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT-ANKVARYLYISVSTLHR 197 A +L + + L R +LL T+ T KVA+ L++S +L R Sbjct: 234 ADVLLANENERLCEIYFGRLFNRKLTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQR 293 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 L+ EG +F+ ++D+VR A ++++ IS+IA G+ F+ F F+ +P Sbjct: 294 HLSQEGTNFRELVDEVRQEIAERYLKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPE 353 Query: 258 EIRKASRE 265 R++ +E Sbjct: 354 TYRQSLQE 361 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 111/250 (44%), Gaps = 15/250 (6%) Query: 31 ALCRIRQGKK-VINWETHTLTVDNNQIILFPCGYEFY--IENYPEAGLYLAEMLYLPIDL 87 A+ + G K I ++ ++++ ++ P + I L + + Sbjct: 22 AMIAMLTGAKGNIVINGQSIEIESDVTLIIPKYSQVSCNIVCNTVKQPLELHTLSMSAEE 81 Query: 88 IES-FQKLYTVTDQIRNKTS----FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG- 141 +++ F L T+ TS + + + + LK + + QE L M Sbjct: 82 LQAVFLLLKTLMKSGAPLTSHQPIYHISPPETVRDNFSLLKQCLPLKKQSASQEALLMKQ 141 Query: 142 ----VLLSLGVNHVNHL-LLSYSKQSLISR-CYNLLLSEPGTKWTANKVARYLYISVSTL 195 +L+++ ++ L L ++ ++ +L+ EP KW + VA+ L+ + STL Sbjct: 142 SLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEPQKKWHLDDVAKALFTTPSTL 201 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R L EGVSF+ +L DVR+ AL+ + + + +I+ G+ + F + F ++N+T Sbjct: 202 RRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISHRCGFGSNAYFCDVFKRKYNMT 261 Query: 256 PREIRKASRE 265 P + R SR+ Sbjct: 262 PSQFRLQSRQ 271 >UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IA59_VIBHO Length = 317 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 3/138 (2%) Query: 130 FSTKIQEHL--AMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPGTKWTANKVAR 186 +++++QE L A + +++ V ++L + + ++ +L PG A +VA Sbjct: 180 YASELQEKLPSANKLTVTMCVQSCENMLAALQATDDIAAQVQAFILQSPGKFPGAEQVAS 239 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 + S+ TL+R+L+ G ++Q +LD+ R N A+ +Q T I +I+ G+ P+ F + Sbjct: 240 HFNCSLRTLNRKLSESGQTYQKVLDNTRQNLAVRYLQQTSMKIEDISTLVGFSEPANFYK 299 Query: 247 RFHNRFNITPREIRKASR 264 F TP E R ++ Sbjct: 300 AFKKWTGKTPIEYRNDAK 317 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 5/168 (2%) Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF--STKIQEHLAMGVLLSLGVNHVNHLLL 156 + R + +I+ + + S+ +Q+H ++ LS H+ + Sbjct: 180 PKSRGCEPLACVRQESVIHDCSDVGFAFSKAVLEYPLVQDHESLMAFLSTAPYHL--VTQ 237 Query: 157 SYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 K S R N+L E +A +++ L +SV+T+ R+L+ EG S+Q + D+ R+ Sbjct: 238 DPLKLSFTERVRNILKREVNRSIPSAEQLSEMLNMSVTTMRRQLSKEGTSYQKLKDECRM 297 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 A+ + ++IA + G+ PS F F TP E R+ Sbjct: 298 EVAIHYLACAELSNADIAEKLGFDEPSAFFRSFKKWTGQTPGEYRQQQ 345 >UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vibrionales RepID=C9NYS3_9VIBR Length = 349 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 76/215 (35%), Gaps = 24/215 (11%) Query: 74 GLYLAEMLYLPIDLIESFQKLYTVT----------DQIRNKTSFFLPQNPELIYCWEQLK 123 G + AE L L+ + + T + F PE + +L Sbjct: 129 GYFRAEQLIELDSLLPFCCEYWFATIQNLCEEVMQQPFPSHVLKFPYPKPEYGDLYNELF 188 Query: 124 --------TSVSRGFSTKIQEH----LAMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNL 170 + F Q H A + L + + + +L S +L + + Sbjct: 189 RCQIEFDSQELEWEFDAS-QLHNPLPSANAMTLQMCLKSCDEMLAKVSSTPNLKEKITQI 247 Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 + PG + ++ L +S TL R L +E +Q ILD VR + A + +T I Sbjct: 248 FIERPGRYPSIEALSSELGMSSRTLRRHLKAEQTGYQQILDHVRFHLAKYYLVSTGLNIE 307 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 EI+ G+ + F F +P+ R + + Sbjct: 308 EISERVGFSDSANFRHAFRKWNGCSPKAFRNQAAD 342 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 1/118 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGV 204 L L++ + SL S+ +L + + +A++VA L +SVSTL RRL E Sbjct: 223 LKTAPYQLLVMVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLNDEKT 282 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 S+QSI DD R A++ + I++IA G+ PS F F +TP E RK+ Sbjct: 283 SYQSIKDDCRKEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEYRKS 340 >UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VSF4_ALCBS Length = 338 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 5/208 (2%) Query: 54 NQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNP 113 N+++ +E+ + ++ E L ++I + Y D +P Sbjct: 134 NELLALGELAPLIMESLFSSFHFMGEKLVPGQEVIGELRFSYPEPDYFAR-LRPVMPVPV 192 Query: 114 ELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLL 172 + Q++ V R K A L + + + + L+ + ++L Sbjct: 193 YFDCAYNQMRFPVER---MKYTLQFADPRLARMAADQCEQEMATIKLPPPLLGQVRRIIL 249 Query: 173 SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEI 232 G +VA L++S TL R+L G S+Q +LD +R A+ + + K + EI Sbjct: 250 GGGGRFPGVEEVAGELHMSSRTLKRKLQQLGTSYQEVLDGLRKGLAVEYLTQSEKTVDEI 309 Query: 233 ARENGYKCPSRFTERFHNRFNITPREIR 260 A GY S F F +P + R Sbjct: 310 AMTLGYSDASNFARAFRRWTARSPSDYR 337 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 50/98 (51%) Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 L + N LL+ P + + VA L +S TL R+L +EG S+Q +LD VR A + Sbjct: 240 LSQQVSNCLLNSPDGYPSLDDVASRLAMSRRTLIRKLKTEGTSYQDLLDGVRQELAAWYL 299 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 T + +IA GY+ S F+ F F +TP +R Sbjct: 300 LETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTPHAMR 337 >UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=pseudomallei group RepID=Q2SUV3_BURTA Length = 398 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 54/104 (51%) Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 + R L +P T + +A L +SV TL RRLA EG +++++D++R A Sbjct: 295 SEGWAGRVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAE 354 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + + TT ++E++ GY PS F F ++P E R+++ Sbjct: 355 ALLATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA 398 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 65/196 (33%), Positives = 87/196 (44%), Gaps = 6/196 (3%) Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 + N P+ Y A ++ E F L +N L NP L Q Sbjct: 1 MRNIPDQEEYFALLIEFD---FEDFNDLPQNAGTSQNYVQGQL--NPLLESALHQFID-F 54 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 S + +L + + + +SL R L+ T+ TA +A Sbjct: 55 SLVAPPSAFKFRKRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAA 114 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 L++S STL R+L SEG S Q I + VRL + L IQTT I IA E GY+ SRFTE Sbjct: 115 QLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTE 174 Query: 247 RFHNRFNITPREIRKA 262 +F N F ITPRE+RK Sbjct: 175 QFKNLFGITPRELRKT 190 >UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VH68_PSEU5 Length = 346 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 81/188 (43%), Gaps = 20/188 (10%) Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS--TKI 134 +A +P + E ++ L+ R SF +P L++ +L S++ ++ Sbjct: 176 VALHRPMPREGAEPYETLF------RAPVSFGVPH-GFLVFDKAELLQSLAGSCPELAQV 228 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 + + +G L L N V S+ + L P T +KVA L +S +T Sbjct: 229 SDTIVIGYLARLDKNDV--------ITSVKQKIIEFL---PDGDCTRDKVANALCMSPTT 277 Query: 195 LHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNI 254 L +L+ FQ +LD+ R + A S ++ +P++EI G+ S FT F + Sbjct: 278 LQLKLSQRSTHFQQLLDETRKDLACSYLRQVTRPVTEITFLLGFSDTSNFTRAFKRWTGL 337 Query: 255 TPREIRKA 262 +P R+ Sbjct: 338 SPTNFRQQ 345 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 73/188 (38%), Gaps = 11/188 (5%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 + Y IDL + ++ +++ F + ++++ L+ +S Sbjct: 164 SRQWYSRIDLDYPAPEYISLYEEVLGPNLHFEKAHTQIVFPRVLLELPLS---------- 213 Query: 138 LAMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 A +L LL Q + LL + PG + A L +S +L Sbjct: 214 FANEQAAALCEQQCAALLGQMQAVQGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSLR 273 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL+ EG +++ ++ D R+ A S ++ I E+A GY S F F + TP Sbjct: 274 RRLSEEGTTYKEVVLDFRMELASSYLRGREMTIQEVAFLAGYADASNFHRTFSRYYGATP 333 Query: 257 REIRKASR 264 E R + Sbjct: 334 GEFRAGEQ 341 >UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IVW4_COMTE Length = 364 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 2/119 (1%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 L + + SY + ++ + LL ++ G T + V+ L++S TL R+L EG+S Sbjct: 240 LARAPRDWIFTSYHEHAIRLKVRELLHADLGR--TLDDVSSRLHMSSRTLIRKLQEEGLS 297 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 FQ I D++R + A+ + ++EI+ G+ P+ F F + +TP R A R Sbjct: 298 FQGIKDELRRDLAILNLVRNDVSLAEISYALGFSTPAVFHRAFRHWTGMTPGTYRTAQR 356 >UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=unclassified Gammaproteobacteria RepID=A4A9K9_9GAMM Length = 336 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 11/187 (5%) Query: 80 MLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLA 139 L + V ++ +F + + E L T + Sbjct: 157 QFPLRFEFPYPAPAHAAVYTEVLGDDVYFDCEAAVWSFPLELLDTPLPSSNPA------- 209 Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLI-SRCYNLLLSEPGTKWTANKVARYLYISVSTLHRR 198 L L LL S + I + +LL G +VA L +S T RR Sbjct: 210 ---LRQLYEAECARLLADLSDSAAIGEQTRSLLRKLEGQYPKMPQVATMLNMSPRTYRRR 266 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L EGVSFQ++LD+VR +A ++ PI+ IA + G+ PS F + +TP Sbjct: 267 LTEEGVSFQALLDEVRAEHATRHLRERRLPIASIAYQLGFNDPSNFRRAYRRWTGVTPGA 326 Query: 259 IRKASRE 265 +R E Sbjct: 327 VRNKGDE 333 >UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5H8_9GAMM Length = 358 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 4/193 (2%) Query: 75 LYLAEMLYLPIDLIESFQKLYTV---TDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 ++ A ++ + +E+ + V T ++ I+ V Sbjct: 162 IFFATLVTFAREAVETALRPLHVSFHTPPPEQGAAYLEDFFGCDIHFNADCNVVVFDREQ 221 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYI 190 + +L ++ L + L +R + + T +A L + Sbjct: 222 AAQKLLTHNMMLTQSHEKMLDEYLSRVDQNDLANRVKCRIQDKLALGSPTQADIASTLGM 281 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S+ L R+L+ +G SF+ IL+ R AL I+ + EIA G+ + F F Sbjct: 282 SLRNLQRKLSEQGTSFKDILEQTRRKLALEYIEQRHLTLGEIAYLVGFSSAANFNRAFKR 341 Query: 251 RFNITPREIRKAS 263 ++P E R + Sbjct: 342 WTGVSPGEFRVSH 354 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 17/229 (7%) Query: 41 VINWETHTLTVDNNQIILFPCGYEFYIENY--PEAGLYLAEMLYLPIDLIESFQKL---- 94 + + +D + +F +EN+ A L+ + + P ++S +L Sbjct: 27 RLTQRDGIVDIDVLEAFALGRLRQFAVENFLVETAILFNSLLDPAPGRTLQSRAELHFEW 86 Query: 95 --YTVTDQIRNKTSFF-LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 ++ R + + I C L + + + + L Sbjct: 87 PEPPWFERYRARLPRCHFNASANRIRCDAALLDEPIGTANAQTAQMIVQQCEAELARLGY 146 Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 +S++ R NLL+ + + VAR L++S TL R+LA G ++ ++LD Sbjct: 147 A--------ESIVERVRNLLICGDAGYPSVDDVARELHVSARTLKRKLAEFGATYSTLLD 198 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 ++RL +AL ++ T P+ EIA GY + FT F + P E R Sbjct: 199 EIRLRDALRLLEGTRLPVDEIAARVGYTDRANFTRAFKRWTGVAPSERR 247 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 55/261 (21%), Positives = 99/261 (37%), Gaps = 10/261 (3%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVIN-WETHTLTVDNNQIILFPCGYEFYI 67 L+ + K + + L L ++ GK I +T +I +I Sbjct: 18 LQSAQNWQRKSLSLQGLNLLQSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHI 77 Query: 68 ENYPEAGLYLAEMLYLPIDLIESFQKLY-----TVTDQIRNKTSFFLPQNPE--LIYCWE 120 ++ L I++ + +D + T+ L E + + Sbjct: 78 TMEETHEQLNYNLIELDSASIKNAYNFFLYEHADFSDPLTKPTTKHLLAPIETGVARVFN 137 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLS--LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK 178 L +S ++ ++ + LLS + L S+ +L YN+++S+ K Sbjct: 138 LLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRK 197 Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 W ++ LY+S STL R+L E SF + + R+N A ++ + I+ +A GY Sbjct: 198 WALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGY 257 Query: 239 KCPSRFTERFHNRFNITPREI 259 S FT F F TP E Sbjct: 258 DSASYFTCVFKKHFKTTPSEF 278 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 10/242 (4%) Query: 27 PLMPALCRIRQGKKVINWETHTLTV-DNNQIILFPCGYEFYIENYPEAG--LYLAEMLYL 83 P + + G+ + T+ D + G +P + + L Sbjct: 55 FFEPTVLIVLAGRIEFLTSGESHTLADTAAVGFIDQGVIADYTKFPPDNGSPFRSLFLTF 114 Query: 84 PIDLIESF----QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR-GFSTKIQEHL 138 D++ESF Q +++ + N L + L ++++ S Sbjct: 115 SADVLESFYQFSQSHLSLSGDRKKPKFTATALNGALRESLQTLLKNLTQPNLSDARIRLR 174 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRR 198 +LL L +++ L +Q ++ R +LL + P T WTA L +S STL RR Sbjct: 175 IFDLLLVLAEQNIHFAL--PRRQGVLPRLSHLLRASPETDWTARSAGEALAMSESTLRRR 232 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L EG SF+ +L D+R+++ L IQTT ++++A GYK SRF ERF RF + P Sbjct: 233 LREEGGSFEKLLVDIRMHHGLMLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPPSR 292 Query: 259 IR 260 +R Sbjct: 293 LR 294 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 55/242 (22%), Positives = 88/242 (36%), Gaps = 16/242 (6%) Query: 26 KPLMPALCRIRQGKKVINWET--HTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYL 83 P L ++ GK + + + + II G+ +EN A L Sbjct: 166 TVFKPKL-QVNDGKAYLYFNQPLQQFRFNRHAIIFLVFGFAQIVENL--AQQRLDIRFEF 222 Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVL 143 D + ++K++ I F +N LI L K + L + Sbjct: 223 QQDKPDFYKKIF----NINQLNGEFNAKNDCLILNQNVL------SLPLKTADALVARLT 272 Query: 144 LSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 + + L L S L E + +VA L++S TL R+LA E Sbjct: 273 IQQCKQDIQKLFLKRKNVDSAAKNVKEELYDEALGFLSLKQVAERLHLSERTLQRQLAKE 332 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 SFQ ++ +VR A ++ I +IA GY S F+ F N+TP+ R+ Sbjct: 333 QTSFQLLIAEVRRKQAEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTPKFYREV 392 Query: 263 SR 264 R Sbjct: 393 ER 394 >UniRef50_A7ZH67 HTH-type transcriptional regulator YdeO n=2 Tax=Escherichia coli RepID=A7ZH67_ECO24 Length = 240 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 22/246 (8%) Query: 27 PLMPALCRIRQGKKVINWE--THTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLP 84 MP +C KK IN++ L ++ ++L ++++Y + YL Sbjct: 5 VAMPGVCYFILIKKPINFQFLKDFLILNYGDVLLLKHSERDFLQSYSDK--------YLE 56 Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELI---YCWEQLKTSVSRGFSTKIQEH--LA 139 I+L E + Y K FL P ++ + + L S+ +++ H Sbjct: 57 IELNEDTVRNYLSYYNHCEKQ--FLETPPCILRKSFAYPDLLISMIDNINSQNHIHPDFK 114 Query: 140 MGVLLSL----GVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 + SL L+ + + ++ LS+ W +A YLY+S S + Sbjct: 115 DAIFFSLLSVFSDVANLRAFLTSGMPTFSGKVRSIFLSDVSKHWKLRDLADYLYMSESLI 174 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 ++L E SF IL D R++ A+ ++ PI ++ G+ S F F + T Sbjct: 175 KKKLLLENTSFSKILLDTRMSLAIKLLKQ-NHPIKYVSEMCGFSSTSYFVCLFRQYYECT 233 Query: 256 PREIRK 261 PR+ K Sbjct: 234 PRKYLK 239 >UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A5EF29_BRASB Length = 382 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 8/187 (4%) Query: 76 YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP-QNPELIYCWEQLKTSVSRGFSTKI 134 +L+ +L P+ + + F P + W ++++S Sbjct: 173 FLSRVLEAPVPSLRMLLPYPAPPHWRQYGRMFNCPVEFGADTMEWHLAESTLSVPLPN-- 230 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWTANKVARYLYISVS 193 A ++ + +L S L +L+ +PG T +++A + +S+ Sbjct: 231 ----ANPMVAKVCERFCEQVLSEQRPASELAESIRTILVRQPGRFATIDEIASEIGMSLR 286 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL+RRLA++G+++QSI+DD+R A+ ++ T P+ +I G+ S F + F Sbjct: 287 TLNRRLAADGITYQSIIDDMRKTLAIEYLERTTLPVEQICARVGFSDTSNFRKAFKKWTG 346 Query: 254 ITPREIR 260 +P R Sbjct: 347 QSPSSFR 353 >UniRef50_A9ATI3 AraC family transcriptional regulator n=26 Tax=Betaproteobacteria RepID=A9ATI3_BURM1 Length = 348 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 67/165 (40%) Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY 158 + R+ + + + E+ S + + L + + ++ Sbjct: 184 PRPRHAVDHLYFFSGPVQFDCERTLMRFSADYLDAPIRQSKRNLRKFLARAPGDWIFETF 243 Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 S+Q + R L + A +L+ SV TL R LA+EG +FQ++ D++R + A Sbjct: 244 SEQRVCHRVRQYLSEALPDLPVIEQAAEHLHCSVRTLSRHLAAEGTTFQALKDELRRDIA 303 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + + T I+ I + G+ PS F F + TP R+ + Sbjct: 304 IQRLTDTQDTIAAIGADIGFDDPSAFHRAFRHWTGSTPGTYRRRA 348 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 9/182 (4%) Query: 93 KLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK----IQEHLAMGVLLSLGV 148 + + ++ FL Q EL+ C Q +R ++ + +A + L Sbjct: 156 QKLEIKAELNYPEPAFLEQVQELLPCEIQFNQPFNRLVFSENFLALPLIMADPLAARLAR 215 Query: 149 NHVNHLLLSYS-----KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 H L + K L + LL E + VA L+++ TL R+LA EG Sbjct: 216 EQCKHDLNKLAAKRGEKHPLTALVRELLFDEVEGFFKMKDVAEKLHLTERTLQRQLAKEG 275 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 V+FQ +LD VR +A + IS I+ + GY + FT F N TP++ R Sbjct: 276 VTFQILLDQVRERHAKKLLNHHEYSISYISEKLGYSEVTHFTRAFKRWTNQTPKQYRNLR 335 Query: 264 RE 265 E Sbjct: 336 EE 337 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 14/181 (7%) Query: 95 YTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHL 154 + + +IR + + F P+ +E L +R F L L++ + Sbjct: 183 WLIGQRIRLEEATFAYPEPQHSAEYE-LLFPCTRRFGAGATSLLFHARYLAMPLLQDERT 241 Query: 155 LLSYSK-------------QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 L + + SLIS+ LL + T +VA+ L+ S TL R L Sbjct: 242 LKQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLRE 301 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EG SFQ + D +R + A+ + I +IA + G+ PS F F +TP R Sbjct: 302 EGTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRA 361 Query: 262 A 262 Sbjct: 362 Q 362 >UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNS6_9GAMM Length = 248 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 65/125 (52%), Gaps = 1/125 (0%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISR-CYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 A L +L N +L+S Q+ + R +LL + + A +AR L +S +L+R Sbjct: 122 ASRFLATLCSNFCESVLVSGEGQTRLQREIRLILLGKIRQQPVALDIARELGLSKRSLYR 181 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL E +FQ +LDDVR + A+ + +T P+ E+A G+ PS F + F +TPR Sbjct: 182 RLQEENATFQGLLDDVRASVAIQFLSSTSLPVEEVAHRVGFADPSNFRKAFRRWTGVTPR 241 Query: 258 EIRKA 262 R A Sbjct: 242 SYRSA 246 >UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BGF1_9BURK Length = 469 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 11/172 (6%) Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFST----------KIQEHLAMGVLLSLGVNH 150 + + F P+ P + L+ ++ LA + + + Sbjct: 294 VPARAQFAQPRPPHAALLADVLECPIAFDQPRHALGYPSAWLARAPQLANPITAAQVSSQ 353 Query: 151 VNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 LL Q + R Y L PG + +A L I+ TL R+L +EG S+ ++ Sbjct: 354 CARLLDELRSQADVTRRVYQELTRTPGQFPDIDAIADSLCITSRTLRRKLEAEGTSYSAL 413 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 L VR A+ + TT I +IA G+ F F TP ++R+ Sbjct: 414 LTSVRKALAIDYLSTTTLSIDDIASTLGFSDAVGFRHAFKRWTGTTPSDVRR 465 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 98/243 (40%), Gaps = 3/243 (1%) Query: 26 KPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAE-MLYLP 84 L + K ++ N ++F + ++ E + ++ L L Sbjct: 3 PLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIQVDKCVENFVLVSRDTLSLF 62 Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 + +++ ++ + ++ + QL + + ++ +++ + LL Sbjct: 63 LPMLKEEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALL 122 Query: 145 S--LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 S L LLL+ + ++ +R ++ + +WT ++A L +S S L ++L E Sbjct: 123 SVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE 182 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G S+ +L + R+ AL I I +A GY S F F N + +TP E ++ Sbjct: 183 GTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242 Query: 263 SRE 265 S + Sbjct: 243 SAQ 245 >UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B2JV94_BURP8 Length = 372 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 79/236 (33%), Gaps = 19/236 (8%) Query: 38 GKKVINWETHTLTVDNNQIILFPCG-YEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYT 96 G I W H D I + P + + + +I+ + Sbjct: 134 GMLDIRWAEHD---DAATWIFPKRNEVRVPDVDEPLYDFLIDLQFAVHVTVIKDVMGAWC 190 Query: 97 VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE----------HLAMGVLLSL 146 V + F Q P + L+ + + LA + + Sbjct: 191 VPAR----AMFTRAQPPHAALLADVLECPLVFEQPQNLLSYPAAWLSRTPQLANPITAAQ 246 Query: 147 GVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 LL + Q + R Y L PG ++A L ++ TL R+L +EG S Sbjct: 247 VSTQCARLLEQFRWQAGITRRVYQELTRTPGRFPDIEQIAESLCMTSRTLRRKLEAEGAS 306 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + +L VR A+ ++TT + +IA G+ F F TP ++R+ Sbjct: 307 YSELLTGVRKALAVDYLKTTALSVDDIALTLGFSDAVSFRHAFKRWTGKTPNDVRR 362 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 14/181 (7%) Query: 95 YTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHL 154 + + ++ + F P ++ L + F E L L + Sbjct: 151 WLIERRLPLERVHFSYPRPAHADEYDALFFAPVMQFDAPRTEITFAADYLDLPIRQDEKT 210 Query: 155 LLSY-------------SKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLA 200 L + + SL SR +L S+ G + T N VA LY+S TL RRLA Sbjct: 211 LEEFLKAAPAQLLVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTLRRRLA 270 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +EG S+Q + D +R + A+ + + ++A++ G+ S F F +TP R Sbjct: 271 AEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVTPGLYR 330 Query: 261 K 261 + Sbjct: 331 Q 331 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLAS 201 L + L S+ QS+ + ++ P ++A+ L++S TL R+L Sbjct: 63 LARVNDEQTQAYLDSFVVQSISRGVVDKIVEHLPDGPPNQQQIAQALHVSNRTLQRKLKD 122 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EG SF +L D RL A + + + E A G+ PS F+ F + P + R Sbjct: 123 EGTSFMDLLQDTRLQLARKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPADFRD 182 Query: 262 ASR 264 + R Sbjct: 183 SHR 185 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK--WTANKVARYLYISVSTLHRRLASEG 203 L L+ + S+ ++ +L VA L S TL RRL E Sbjct: 215 LKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRRRLKEEN 274 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 SFQ+I D VR + A+ + I+EIA + G+ PS F F +TP + R Sbjct: 275 TSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPGDYRSEQ 334 Query: 264 RE 265 + Sbjct: 335 AQ 336 >UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R2_9GAMM Length = 342 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 51/105 (48%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 S S + L+L+ PG + +A + +S TL RRL +EG +F+ +L+++R A Sbjct: 235 SHGSFVDEVRLLMLARPGYFPDIDALAGKIGMSARTLRRRLKNEGSTFREVLEEIRYGLA 294 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + T P+ EI+ GY F+ F ++P R+ + Sbjct: 295 REYLANTHLPMDEISLLLGYTEAGNFSHAFKRWSGLSPSLWRQHA 339 >UniRef50_A3WY00 Transcriptional regulator, AraC family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY00_9BRAD Length = 345 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 7/154 (4%) Query: 109 LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCY 168 L PE + ++ + ++ L L + L L + Sbjct: 193 LYDKPENRFTFDAAWLDRRPDYGNELT----YAELRQLCDGLLKQLKLG---AGVAGEVR 245 Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 L+L+ ++A+YL +S +L RRL EG SF+ + D+++ A+ I+ T Sbjct: 246 GLILANLSMPIEFKRIAKYLNMSERSLRRRLQEEGTSFRQLADELKAQIAIKYIRDTDLS 305 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + EIA G+ + F F N TP++ RK+ Sbjct: 306 VEEIAFALGFGDAASFRHAFRRWTNATPQDYRKS 339 >UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=Acinetobacter RepID=A3M2M8_ACIBT Length = 335 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 + L I+L S + I F +++ ++ + T QE+ Sbjct: 155 SVFSPLRIELRRSEPEDLETFQSILKAPIVFNAPKDMIVFDTATIEQPLEGANPTLTQEY 214 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRC-YNLLLSEPGTKWTANKVARYLYISVSTLH 196 +N L + K+++++R L+ + VA+ L +S+ +L Sbjct: 215 ----------DEIINRYLARFDKENILARVKVKLIEKLSTGDFQQQDVAKSLGLSIRSLQ 264 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R+L++E S+ +LD R ALS I+ + I+EIA G+ S FT F +++P Sbjct: 265 RKLSAENTSYSELLDQTRHELALSYIKNSSHNITEIAYILGFTDVSSFTRAFRRWTDLSP 324 Query: 257 REIRK 261 R+ Sbjct: 325 IHYRE 329 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 9/169 (5%) Query: 95 YTVTDQIRNKTSFF-LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNH 153 + R++ I C L R + + + L Sbjct: 187 PPYFARYRDRLPRCHFGAPANQIRCEAALLDEPIRTANAHTAQMIVQQCEAELARLGYA- 245 Query: 154 LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 +S++ R NLL+ + + +AR L++S TL R+L+ G ++ ++LD++ Sbjct: 246 -------ESIVERVRNLLIRGNNGYPSLDALARELHLSERTLKRKLSDYGATYSALLDEI 298 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 RL +AL ++ T + EIA GY + F+ F +P R+A Sbjct: 299 RLRDALRLLEGTHLTVEEIAARVGYTDRANFSRAFRRWTGTSPSSRRRA 347 >UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG28_PSEU5 Length = 312 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 1/128 (0%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHR 197 A ++ + + L + + + +++ + +A L +S LHR Sbjct: 183 ANAMIAGMNEQLLRDYLGRMRHEQVSLQVRKEIIALLSSDKLGLEHIAERLNMSGRNLHR 242 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 +LA EG SF+ + D++R + AL + + ++EIA G+ S F F +P Sbjct: 243 KLAEEGTSFKELQDEIRQDLALRYLGMSGMSLNEIAFNLGFIDQSSFNRAFKRWTGGSPG 302 Query: 258 EIRKASRE 265 + R+A RE Sbjct: 303 QYRRALRE 310 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 12/186 (6%) Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL----- 144 + T +++ + P + + V G S +LL Sbjct: 151 ALAHWITGQERLLKEVEIEFEAPPYAQHYQQAFNCPVKFGRSRNALIFRKEALLLPSIYA 210 Query: 145 -----SLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHR 197 S V+ N L + SL R ++ G + + A+ L +S TL R Sbjct: 211 NPATHSEIVSICNRELTTLVGATSLTERVKQIITPMLQGREVGLTETAKQLGLSEWTLQR 270 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL EGV FQ +LD+ R A + ++ T I EIA G+ P+ F F F + P+ Sbjct: 271 RLKKEGVQFQQVLDETRKQIAETYLKATDLTIGEIAYLLGFSSPAAFHRAFKRWFGVNPK 330 Query: 258 EIRKAS 263 + Sbjct: 331 PFKDQH 336 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 11/181 (6%) Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 ++L + ++ F ++ +L + + L +S Q Sbjct: 170 VELNYKAPPYRAMYSEVLGDPVLFEREHNQLSFPADLLDQPLSFANEAAAQ--------- 220 Query: 145 SLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 L LL + + +L ++PG +VAR L + TL RRLA E Sbjct: 221 -LCEQQCAALLGELKRTDGIEGEVRRILANQPGKYPGIIEVARALAMGERTLRRRLADED 279 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +++ ++ + R+ A S ++ I EIA GY PS F F+ +TP R+ Sbjct: 280 TTYKQVVLEFRMELAASYLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTPNAYRRLH 339 Query: 264 R 264 + Sbjct: 340 Q 340 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA-NKVARYLYISVSTLHRRLASEGV 204 L + + L +S R L+ + A VA L +S TL RRL EG Sbjct: 212 LRESPADLLARPAKDESYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGT 271 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S+Q + D +R + AL + I EIA++ G+ PS F F +TP + R+ Sbjct: 272 SYQELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTH 330 >UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HU78_ACIBC Length = 342 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Query: 153 HLLLSYSKQSLISRC--YNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 +LL+ + ++ +S +LL P VA+ L IS +T+ RRL EGVS+Q I Sbjct: 225 NLLVRFKNENALSVVIRRHLLKLHPAEWPELKDVAQQLNISEATVQRRLKHEGVSYQQIK 284 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +++R + A+ + + I +I+ + + PS F F ++P R Sbjct: 285 NEIRCDIAIERLSKSNDSIQDISEDLNFHDPSAFHRAFKKWTGVSPGAYR 334 >UniRef50_C6CDS4 Transcriptional regulator, AraC family n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDS4_DICDC Length = 337 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 10/191 (5%) Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLK-TSVSRGFSTKIQEHLAMGVL 143 I + ++ K TV D +R + F + P I +E L V G + A +L Sbjct: 146 ISTLYAYCKWLTVGDFVRFSSVDFCYEKPANIEEYEALFGCPVQFGMGSSRMYFYADDLL 205 Query: 144 LSLGVN-------HVNHLLLSYSKQSLIS-RCYNLLLSEPGT-KWTANKVARYLYISVST 194 L H NH L + + + + ++ + V+ LY++ T Sbjct: 206 KPLITKDEVLHRMHENHAQLKLKSEGVFTLKVRKVIEEQIKKGYCNVMSVSTSLYMTQRT 265 Query: 195 LHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNI 254 L RRL EGV F+ IL DV++ + + + P+S IA GY+ S F+ F + Sbjct: 266 LQRRLEDEGVYFKDILSDVKIELSRYYLIYSQCPLSHIADMVGYRDISSFSRACIRWFGM 325 Query: 255 TPREIRKASRE 265 P R +++ Sbjct: 326 PPSFYRAENKK 336 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 134 bits (337), Expect = 3e-30, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 14/186 (7%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLG---- 147 + + + + F P+ +E+L F ++ E +L+L Sbjct: 157 RTQTAIGPMAKFTCAKFAHSKPDYAAAYEELF-PCKVSFESEFCELRFDAQMLNLKPKRR 215 Query: 148 --------VNHVNHLLLSYSKQSLISRCYNLLLSEPGT-KWTANKVARYLYISVSTLHRR 198 +N+ N +L K+S+ + L+ ++ A +VA+ L +S TL+R+ Sbjct: 216 NPHIGRATLNYANQILSRLFKRSISDKVRRLVEVNIADSEFDAEQVAKALNMSRQTLYRK 275 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L ++ S+ I++ V+ A ++TT P++ IA + G+ S FT F ++P E Sbjct: 276 LKNDNSSYSDIVEAVKKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFKRWTGLSPAE 335 Query: 259 IRKASR 264 R+ ++ Sbjct: 336 FRRQNQ 341 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 1/121 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 LL + + L + + + +LL G T VAR L IS +L RRLA E Sbjct: 209 LLRVFEDQCARQLRQRQVEGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRLAEE 268 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 GVSF +LD R A + +T + E+A GY + FT F +N +P E R+ Sbjct: 269 GVSFSDLLDAERQQLAEQLL-STQMKLDEMALHLGYGDTASFTRAFRRWYNCSPGEYRRN 327 Query: 263 S 263 Sbjct: 328 Q 328 >UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family) n=3 Tax=Acinetobacter RepID=Q6FBV2_ACIAD Length = 347 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 84/200 (42%), Gaps = 8/200 (4%) Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKT-------SFFLPQNPELIYCWEQLK 123 P+ A ++ L L+ D I+ K+ +++ ++ + ++ Sbjct: 137 PKRMFVYATLIMLIHGLLCWLSDQRISIDHIKIKSVKPIYPQDYYIRFCEKIEFSSDENL 196 Query: 124 TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYN-LLLSEPGTKWTAN 182 +++ + ++ L N L+ ++ +L L+ P Sbjct: 197 IAINSACLKLKIKKNKNDLINFLKHTPHNLLVRYKNEDALGLLIRRHLIRHHPSEWPELK 256 Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +++ L++S +TL RRL +E +S+Q++ +++R + A+ + T ++EI+ + PS Sbjct: 257 QLSHELHMSEATLQRRLKAENMSYQALKNEIRCDIAIEQLINTKHTLNEISEALDFHDPS 316 Query: 243 RFTERFHNRFNITPREIRKA 262 F F ++P RKA Sbjct: 317 AFHRAFKKWMGMSPSAYRKA 336 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 110/265 (41%), Gaps = 9/265 (3%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHT---LTVDNNQIILFPCGY 63 + +++ E H + R + + G ++ + +T++ +L+ G Sbjct: 3 SPVQLHEFNTHTRRKSDRYPVERNGIFIVTSG--QFHYRDRSGDDITLNAGDFLLYSSGD 60 Query: 64 EFYIENYPEAGLYLAEMLYLPIDLIESF--QKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 I+ + + A+ + + + L + F + T F Q+ ++ E Sbjct: 61 ISKIKMTNDNNNFKAQSVVIDVALFQKFLSYSNAPAHSPCNSDTFIFTAQDTSVVKLLEL 120 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNH--VNHLLLSYSKQSLISRCYNLLLSEPGTKW 179 LK ++ + E L + +L + + + S + + + Sbjct: 121 LKEQLTNNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKISVLTTSQQLIRYVEEHISADL 180 Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T + VA L +S STL R+L S+ +SF ++ R+N A + ++ T K I+EIA + G+K Sbjct: 181 TIDMVAPKLGMSASTLKRKLQSDKLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGFK 240 Query: 240 CPSRFTERFHNRFNITPREIRKASR 264 + F+ F + ITP+E R + + Sbjct: 241 TAAHFSTSFKSVKGITPKEFRDSLQ 265 >UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K0J1_AGRVS Length = 343 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 50/104 (48%) Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 S +I +L + ++ +KVAR L +S TL RRLA GVSFQS+LDD+R N Sbjct: 234 SREAAEIIESVERVLRQKLHSRMHISKVARALGMSERTLRRRLAESGVSFQSLLDDLRKN 293 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 L + + +IA G+ P F F TP +R Sbjct: 294 RTLELLGNRNMSVEQIAFAVGFSDPHNFRRAFRRWTGTTPGALR 337 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGV 204 L + + L + S+ L+ + + +A + +S TL RRL E Sbjct: 273 LKTSPADLLARPDDSNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRRLKEENT 332 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 SFQ I D++R + A+ + I+EIA + G+ PS F F +TP + R++ Sbjct: 333 SFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYRES 390 >UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=Pseudomonas RepID=A4Y0K0_PSEMY Length = 337 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 6/183 (3%) Query: 87 LIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG---VL 143 L F L + R ++ ++ + F E L Sbjct: 156 LSRDFSPLLVQLQRPRPADPAPWQAVFRAPLQFDAAESLLR--FPRAAFEQRLDDGNPEL 213 Query: 144 LSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASE 202 + L S R + L + P + +A ++A+ L++S+ +L R LA E Sbjct: 214 AEHNEAVLKRSLEQLQVASYSERVRSCLEARLPDGEPSAERIAQALHLSLRSLQRHLAEE 273 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G S++++L D R AL ++ ISEIA G+ S F F TP + R Sbjct: 274 GTSYEALLGDTRHALALRHMRDPRCSISEIAYLLGFSDSSSFGRAFKRWTGQTPSQYRDG 333 Query: 263 SRE 265 SR+ Sbjct: 334 SRK 336 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 8/149 (5%) Query: 114 ELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLS 173 ++ + + L + + Q+ + L + + + ++ Sbjct: 189 QIRFPGDYLDRPLLMANPSAAQQAV-------LFCERELEDYRQREEADWVRQVRRAMVK 241 Query: 174 EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 + G ++ +VA L++SV TL RRL G ++ IL + RL A++ ++ + +A Sbjct: 242 QEGGYYSLEEVAAVLHLSVRTLKRRLKEHGANYHRILKEARLERAVALLKEGE-TVQTVA 300 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRKA 262 + GY+ P+ FT F +P + R+ Sbjct: 301 FQLGYQDPANFTRAFRRWTGCSPSDYRQQ 329 >UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S369_9GAMM Length = 357 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 15/237 (6%) Query: 33 CRIRQGKKVIN-------WETHTLTVDNNQIILFPCGYEFYIE-NYPEAGLYLAEMLYLP 84 CR+RQG +VIN + TL+ + + G + + N + ++ Sbjct: 127 CRVRQGVEVINRLKVDADGKEATLSYLYGEDL---PGVQHSVLCNLAMWLRFCGWLIGQH 183 Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 ID+ + + F P + + S + +++ + L Sbjct: 184 IDISSATCAGPE--PEFTAGVRHFFPCPVQYEQPTNSVSFSARHLEAELLRDEPQLQEFL 241 Query: 145 SLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEG 203 L HV + S S+ R +L + + ++ L +S TL RRL EG Sbjct: 242 KLAPYHV-IIEPQASTFSVTHRIRKILGDDFRAEMPSFEELTSLLNMSARTLRRRLEKEG 300 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 S+Q I D+ R + A+S + +SE+A G+ PS F F ++P R Sbjct: 301 TSYQRIKDNARRDAAISLLSREGLTVSEVAERVGFSDPSAFHRSFKKWTGLSPGSYR 357 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 1/114 (0%) Query: 152 NHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 N L+ + SL +R +L + + T ++A L+++ TL R+L +EG S+Q I Sbjct: 221 NLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAYTLSRKLKAEGSSYQKIK 280 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 D++R + A+ + +SEI+ + G+ P F+ F + ++P RK + Sbjct: 281 DNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTGLSPLAYRKQDQ 334 >UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, AraC family protein n=8 Tax=Acinetobacter RepID=B7GX20_ACIB3 Length = 356 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 57/269 (21%), Positives = 95/269 (35%), Gaps = 34/269 (12%) Query: 5 GKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQII----LFP 60 G R I +K P L KK + II L P Sbjct: 104 GYALYSSRNFRQAVELGIRHIKLAGPIL------KKSFYIRDDVAIFEGQDIIALGKLLP 157 Query: 61 CGYEF---YIENYPE---AGLYLAEMLYLP---IDLIESFQKLYTVTDQIRNKTSFFLPQ 111 EF ++ E G + A+ L LP D E ++K++ Q Sbjct: 158 LVCEFWFSSMQTLTERVLEGPFQAKKLLLPYPAPDYAEEYEKVFHCPVQFNAGV-----M 212 Query: 112 NPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLL 171 W + + + + + +L + + L+ +L Sbjct: 213 QWHFDLKWLDVPCPNANPITADMCKSFCERMLGA----------AELEEPELVKTIRLIL 262 Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISE 231 L G +A ++A L++S TLHRRLA +++Q +LD+ R A ++ T + E Sbjct: 263 LDGTGLFPSAQEMAERLHMSKRTLHRRLAGFDLTYQELLDETRRRLADEYLRETTLTVDE 322 Query: 232 IARENGYKCPSRFTERFHNRFNITPREIR 260 IA G+ S F + + + I+P E R Sbjct: 323 IAERIGFSDTSNFRKAYRHWTGISPNEYR 351 >UniRef50_Q0VMP4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VMP4_ALCBS Length = 334 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 12/174 (6%) Query: 103 NKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVL-----------LSLGVNHV 151 +S + P +E + V + Q A+G+L L Sbjct: 160 PLSSLEIRLPPRTAATFESIFGLVPEFGRPRSQARFALGLLDMPLPQANPVTARLCEEQC 219 Query: 152 NHLLLS-YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 + LL+ Y K S+ ++ LL +PG +A+ L I+ TL R L +EG ++ +L Sbjct: 220 HQLLVQRYRKGSVAAQVRRRLLQQPGRFPDMEAMAQELAITSRTLRRHLQAEGTGYRMLL 279 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 D+VR A + + ++EI+ G+ + F F +P R+ + Sbjct: 280 DEVRQMLAEQWLTLGILSLTEISERLGFSEIANFNHAFRRWTGQSPGRFRRERQ 333 >UniRef50_A0YC38 Transcriptional regulator OruR n=3 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0YC38_9GAMM Length = 359 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 1/118 (0%) Query: 149 NHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 +L S S + + LLL G ++VA L +S TL RRL +E VSF+ Sbjct: 238 QQCEGILQSLTSGDKITTEVRRLLLQSAGDFLNISQVAERLNMSERTLRRRLKTESVSFR 297 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 ++ ++VR A + T +++IA Y F F +TP E R+ E Sbjct: 298 TLFEEVRYLMATEYLSKTDLTVADIAHLLSYSETVNFRRAFIGWSGMTPSEYRQQQAE 355 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT-KWTANKVARYLYISVSTLHRRLAS 201 L L H LL SL +R LL + + ++AR L++S TL RRLA Sbjct: 217 LQQLLRQHAEALLARLPSASLSARVIGLLGEQLAHGEPDRAQLARALHLSERTLQRRLAE 276 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EG ++Q +L D R A ++ P +EIA GY PS F F + P E R Sbjct: 277 EGCNYQQLLADTRRQLAERYLREGRLPAAEIALLLGYSEPSVFFRAFRQWTGLPPGEYRA 336 Query: 262 AS 263 Sbjct: 337 QQ 338 >UniRef50_Q5ZTY8 Transcriptional regulator OruR, AraC family n=4 Tax=Legionella pneumophila RepID=Q5ZTY8_LEGPH Length = 337 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 137 HLAMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 H A V L + L S K+ + S+ ++L+++ + +++A L ++ TL Sbjct: 207 HFADDVSYQLAKRQLQELEKKMSLKEDMASKIKSILINQNLNHVSMDEIASRLCMTSRTL 266 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R L V++Q +LD+VR A + + ++EI G++ S F++ F IT Sbjct: 267 RRHLQRLDVTYQELLDEVREQKAKTFLLNNNISMTEICFLLGFQDTSNFSKAFKRWTGIT 326 Query: 256 PREIRKAS 263 P E R+ Sbjct: 327 PTEYREKH 334 >UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2A2_ACICA Length = 339 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 17/192 (8%) Query: 70 YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG 129 P ++ + LP + + ++ F +I+ L + + Sbjct: 161 LPIQFPVMSINIALPAPVYAN------KFPELTGYPIQFNQPRSCIIFESSLLDLPLPQ- 213 Query: 130 FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYL 188 A + + L S S + N+LL +P +++A +L Sbjct: 214 ---------ADPFIRARYEEECQQLWTRRSSLGSYSQKVRNILLQQPSQMPRIDEMAAHL 264 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +++ TL R LA EGV+++ ++DD+R + A ++TT + E+A + GY S F+ F Sbjct: 265 QVNLRTLQRHLAIEGVTYEQLIDDIRKDLAEDLLKTTNLTVEEVAIQLGYSEVSAFSRAF 324 Query: 249 HNRFNITPREIR 260 I+PR R Sbjct: 325 KRWKGISPRNFR 336 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 13/194 (6%) Query: 73 AGLYLAEMLYLPIDLIE-SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 A +++E +YL + ++I F L + + L + + Sbjct: 150 ARRFVSEKIYLTKVGFSHPEPEYVAEYERIFQCPVSFNQPCCSLAFNKDFLTFELPQRNP 209 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEPGT-KWTANKVARYLY 189 L V LL S ++++ + ++ A KVA + Sbjct: 210 ----------YLHQALTRQVEALLQKLSLRRTVSHKVKAIVAKRLSRGDIEAEKVAEKMN 259 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S TL+R+L EGVSFQ +++ VR + AL +Q +SEIA G+ S F+ F Sbjct: 260 MSRHTLYRKLKQEGVSFQELVEQVRKDKALDYLQKGKYSLSEIAFLLGFSELSAFSRAFK 319 Query: 250 NRFNITPREIRKAS 263 +P R Sbjct: 320 RWTGESPASYRSQQ 333 >UniRef50_D2QK57 Transcriptional regulator, AraC family n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QK57_9SPHI Length = 344 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 2/190 (1%) Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 E +Y++ + L + + + + + + +P L+ T V Sbjct: 152 ELSIYMSVIRALTGQRLTALETHFA-YPRPSDTREHERVFDPTLLLFDASETTLVFDAAL 210 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYI 190 A L L H N +L SL SR ++S G + T VA L + Sbjct: 211 LDTPVLNANPSLFPLFEKHANDILNQLHTPSLKSRVKAEIVSLMKGEEPTLVSVADRLAM 270 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 V TL L G S+Q +LD+ R A+ ++ ++IA G+ PS F F Sbjct: 271 GVRTLQLHLKESGTSYQQLLDETRKELAIGHLREPNVSTTDIAYLLGFAEPSVFFRSFKK 330 Query: 251 RFNITPREIR 260 TP R Sbjct: 331 WTGQTPGAYR 340 >UniRef50_Q1N6M1 Probable transcriptional regulator n=1 Tax=Bermanella marisrubri RepID=Q1N6M1_9GAMM Length = 340 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 2/147 (1%) Query: 115 LIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE 174 + + + + G H L + H LL S S + + LL Sbjct: 191 VEFSSQSNSLEIDNGLLQSPLRHGDGETYQIL-MQHAKSLLTQQSFSSPLEVIKDFLLKT 249 Query: 175 -PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 P +VA Y+ +SV + R+L+ G S+ +LD +R A++ ++ T P+ I+ Sbjct: 250 LPDHVPDIEEVAEYMGMSVRSTQRKLSEFGTSYSQVLDGIRKELAMTYLKQTQNPMIFIS 309 Query: 234 RENGYKCPSRFTERFHNRFNITPREIR 260 G+ S F F +TP++ R Sbjct: 310 ERLGFSEQSAFQRAFKRWTGVTPKQFR 336 >UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A8H057_SHEPA Length = 344 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 1/126 (0%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLL-LSEPGTKWTANKVARYLYISVSTLHR 197 A L + S Q R + ++ + +A+ ++S L R Sbjct: 216 ANRELALKNDEAIQAYFQSIVSQPFSQRVSKEISIAMTLGNPDRDAIAKAFHMSSRNLQR 275 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 +L EG SF ++ +R + A + T + EIA G+K PS FT F + ++P Sbjct: 276 KLREEGTSFSEQVEQLRKDLAQKYLATPQLSMLEIAFRLGFKDPSNFTRAFKRWYGVSPL 335 Query: 258 EIRKAS 263 + R+ + Sbjct: 336 QYRQKN 341 >UniRef50_Q397M3 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=Q397M3_BURS3 Length = 335 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 55/111 (49%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 + L +Q+ SR L+ + G T A+ L ++ T+HRRLA EG S++ IL+ Sbjct: 224 DELANQNRQQAFSSRIRRLMFEKVGDFPTQRTTAQLLNVTPRTMHRRLADEGTSYREILE 283 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 VR A+ +++T + EIA GY F F ++P E R++ Sbjct: 284 SVRHKLAIESVKTGKLSLQEIAFLLGYDSLGNFRRAFRRWEGMSPSEYRQS 334 >UniRef50_Q1N621 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N621_9GAMM Length = 339 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 4/178 (2%) Query: 88 IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLG 147 +E + + D +F + P L S S + +H L Sbjct: 163 VERVEVEFAAPDYASAYEDYF--ECPVLFGQQRNALIIKSDALSWPLLQHDKNAFLNLKS 220 Query: 148 VNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSF 206 + L + ++ L + + + G T +VA L + TL R+L SF Sbjct: 221 ICD-ERLAQASRERDLSEKVMDEIGPLLEGQTPTIEQVADSLGMPPWTLRRKLQDHDTSF 279 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 Q++L++ R A S ++ T I EIA G+ P+ F F +++P + RK R Sbjct: 280 QNLLNETRRGLAESYMKDTDLAIGEIAYLLGFSSPTAFQRAFKRWTSLSPGQYRKIKR 337 >UniRef50_A3Y8Y2 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8Y2_9GAMM Length = 357 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Query: 145 SLGVNHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 SL + + +LL S +SL+ + + LL P + +VA L +S +L RRL Sbjct: 228 SLAIKLCDEMLLQQDSNRSLVGKVHLALLRTPEKYPSIQEVAEQLAMSERSLRRRLTELN 287 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S++ I + VR AL +Q + + +IA+ G+ + F F P R + Sbjct: 288 TSYKEIFNTVRQELALRYLQDSNLAMEDIAQLVGFSDSTSFYRSFKKWTGKAPSSYRSNA 347 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 23 HRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLY 82 H V + Q + + + + + ++ F I P Y+ E + Sbjct: 89 HGVLGFAAQISETLQDAAEMVVQFNKTRAEFDDMVFFTNDEWGCIRMQPPDEGYVDERIG 148 Query: 83 LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGV 142 ++ +F L + ++ L + ++ + Q + + G S + H V Sbjct: 149 -RFHVLSAFSNLEQLARRLTGSLEKSL--DTRMLITFPQPSSRLPEGLSPGLSLHFDQVV 205 Query: 143 --------LLSLGVNHVNHLLLSYSKQSLISRCYNL-------------LLSEPGTKWTA 181 ++ + N L+S +++ + + L + G T Sbjct: 206 NELRFPIEMMRQPLPKANPELVSAAQEQMEAELVRLNVRNDVAGMVRLQIQDWEGRLPTL 265 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +VA L++S TL RRL + G S+Q I D R A+ ++ T + IA GY Sbjct: 266 EQVAEQLHMSPRTLKRRLQTAGTSYQQIKDSSRFRRAIHQLEATDSSLESIAELLGYSDA 325 Query: 242 SRFTERFHNRFNITPREIRKASRE 265 S FT+ F + +TP E R+ + Sbjct: 326 SNFTKAFKSWAEMTPSEFRQRLSQ 349 >UniRef50_B0U9X7 Transcriptional regulator, AraC family n=10 Tax=Proteobacteria RepID=B0U9X7_METS4 Length = 364 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 9/154 (5%) Query: 107 FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR 166 FF ++ EL Y L+ H LL + + + + + + Sbjct: 201 FFEQEHCELHYDSAILEQKPQ-------LAHRLTSALLQDACDTL--IGKANASAGVAGE 251 Query: 167 CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 Y +L+ PG VA+ L ++ TL RRL +E VSF +I+DDV + A ++ T Sbjct: 252 VYQILMRSPGVFPDMEDVAQTLRMTSRTLRRRLDAEQVSFSAIIDDVHRSLATEYLRMTS 311 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + +IA G+ + F F P E R Sbjct: 312 MSLEDIALLVGFSDAANFRRAFKRWTGKNPGEFR 345 >UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HZ47_CYAP4 Length = 333 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 15/170 (8%) Query: 108 FLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL------------SLGVNHVNHLL 155 F PE + + +L S F + E L+ S+ H LL Sbjct: 165 FQHPKPEDVSAYHRLFRSPL-AFDHPVNEMRLDAALIQNPLAQADPGLSSILDRHAEELL 223 Query: 156 LS-YSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 +SL+ LL G + +A+ L + TL R+L G S+ S+LD++ Sbjct: 224 ARLPQSESLLDSVNRLLSQALRGGDPSLVAIAQQLGYTPRTLQRKLQEAGTSYHSLLDEM 283 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 R ++ ++ ISEIA G+ S F F ++P + R+++ Sbjct: 284 RRELSIYYLREAQIAISEIAFLLGFSETSAFHRAFRRWMGVSPGDFRRSA 333 >UniRef50_A1U5N3 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=A1U5N3_MARAV Length = 288 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 53/108 (49%) Query: 158 YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 ++Q+ +R L+L + AR +I+ TLHRRL EG S++++L+ VR Sbjct: 181 STEQTWSARVRRLMLQSRHGFPSLEMTARRFHITPRTLHRRLVDEGTSYRAVLEGVRHQL 240 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 A+ +++ I EI+ GY + F + F + P E A R+ Sbjct: 241 AIQYLESGQMSIQEISFALGYSDIANFRKAFKRWEMLAPSEYLNAHRQ 288 >UniRef50_Q1N5E2 Transcriptional Regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E2_9GAMM Length = 341 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 58/121 (47%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 L +L H + LL ++S S ++ L+ T +VA L +S TL RRL E Sbjct: 219 LHTLHRAHADQLLAAHSNTSWKAKVIKTLVESGHYHMTREQVANKLNVSTRTLQRRLQQE 278 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +F ++D+ R A I T + + +IA + G+ S F H F+ TP E+R++ Sbjct: 279 NTNFIDVMDEQRRVKAEELIIKTDRSLKQIAEDLGFAESSTFYRACHRWFDCTPNELRQS 338 Query: 263 S 263 Sbjct: 339 H 339 >UniRef50_A8ZYY6 Transcriptional regulator, AraC family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYY6_DESOH Length = 343 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 1/124 (0%) Query: 139 AMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 A + +L HLL + + R L S ++AR +S TL R Sbjct: 217 ANVLTKNLYEKECRHLLQDLDRFSTTTGRVKQALFSYDNGFPGMAEMARRFNMSPQTLGR 276 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RLA+EG ++++ VR A + +QT+ PI EIA GY + F F + TP Sbjct: 277 RLAAEGTDYKTVSRQVREKRACNLLQTSDLPIEEIAARLGYSDTANFYRAFKSWTGKTPL 336 Query: 258 EIRK 261 R+ Sbjct: 337 GFRR 340 >UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI20_ACIJU Length = 353 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT-ANKVARYLYISVSTLHRRLASEGV 204 L N ++ ++ SL + L+ +P ++W +A+ + +S +T+ RRL EGV Sbjct: 223 LKHAPYNLIVRFKNENSLSLQIRRQLILQPPSEWAELKDIAQQMNMSTATIQRRLKQEGV 282 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S+Q + +++R + A+ + T I I+ + + PS F F ++P RK S Sbjct: 283 SYQQLKNNIRCDIAIERLSKTNDSIQSISDDLNFHDPSAFHRAFKKWSGVSPGSYRKTS 341 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 10/157 (6%) Query: 107 FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR 166 F ++Y L V + +L L + + + + Sbjct: 197 LFEQPYNGIVYDTACLDLPVVQN---------EENLLNFLRTAPYHLVTEDPAHIRFADK 247 Query: 167 CYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTT 225 N+L + ++++VA L++S +TL R+L ++ S+Q + D+ R+ A + Sbjct: 248 VRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQNDNTSYQRLKDECRMEAAFHLLNCA 307 Query: 226 VKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +EIA++ G+ PS F F TP E R Sbjct: 308 DLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEYRAR 344 >UniRef50_B5JY44 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY44_9GAMM Length = 337 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 17/186 (9%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A + D IE +++++ + Q+ I ++ S G S + + Sbjct: 165 ASFRHAEPDYIEQYERIF--------QAPVLFNQSECHIRVPSEVMNSSLSGASPQFNQS 216 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLH 196 A + L S SL + + S+ G ++ +A L ++ TL Sbjct: 217 FAEKAQVLLSRL--------PSDSSLAAEVVQAIESKIGYAVFSMQDIAGELNMTQRTLQ 268 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL EG S+ + D VR A ++ + ++ IA G+ P+ F F ++P Sbjct: 269 RRLKEEGTSYAQLRDSVRFRFAEEYLRDSSMDMATIAANLGFSEPANFYAAFKRWQGMSP 328 Query: 257 REIRKA 262 E RK Sbjct: 329 GEYRKR 334 >UniRef50_A4TFK9 Transcriptional regulator, AraC family n=11 Tax=Actinomycetales RepID=A4TFK9_MYCGI Length = 346 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 2/120 (1%) Query: 146 LGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGV 204 L V + L S S + LL +PG + + +VA L +S STL RRLA EG Sbjct: 228 LAVAELRRTLDEQSGATSFSKKVRRLLDEDPGQR-SCQRVADELSVSTSTLKRRLAEEGT 286 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +F+ + +A+ + T S+IA E GY + F+ F +P E R++ R Sbjct: 287 TFRELRQSCLRESAMMLLITRSMSASQIATELGYGDLANFSHAFKRWTGRSPSEYRRSQR 346 >UniRef50_Q0G2J4 Transcriptional regulator, AraC family protein n=3 Tax=Alphaproteobacteria RepID=Q0G2J4_9RHIZ Length = 360 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 82/207 (39%), Gaps = 8/207 (3%) Query: 62 GYEFYIENYPEAGLYLAEMLY-LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 G E + + LA + +P+ ++ F + ++ F P + Sbjct: 158 GLRLSNEATLASAISLARQVSPVPVTPLQVFLRHGVPGSFAAHEAWFGCPV--RFDAKLD 215 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEP-GTK 178 + S I + L V+H++ L ++ +L+SR + + Sbjct: 216 AILFSPETLAQPNILGDEGISKYL---VSHLDAELNEIAEDVTLVSRARDTIAQALNEGS 272 Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 +ARYL +S + HRRL+ GVSF ++ ++ R + A+ ++ ++EIA G+ Sbjct: 273 PRMKDIARYLGVSARSFHRRLSEHGVSFHTLTEETRRDLAVGLLRDKRHSLAEIAFLTGF 332 Query: 239 KCPSRFTERFHNRFNITPREIRKASRE 265 S FT F TP R+ + Sbjct: 333 AEQSSFTRAFKRWVGQTPASYRRGHAD 359 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 15/182 (8%) Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVL 143 P IE ++ L+ + L W + T ++E L Sbjct: 166 PPANIEKYEDLFRCPLYFNQTNDLLYFDSTCL--AWSVVHTQ------HSLREFLRTAPY 217 Query: 144 LSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT-KWTANKVARYLYISVSTLHRRLASE 202 L + + + +L ++ ++ + + ++ L +S TL RRL E Sbjct: 218 QMLIMEN------DPAGNNLSAQVKAMIGHDFSEGFPSFEMISSALSMSAPTLRRRLKRE 271 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G +FQ I DD R A + I+E+A + G+ PS F F TP + R Sbjct: 272 GTTFQQIKDDSRCEAAKLCLNRHDLSINEVAMQMGFTDPSAFHRSFKKWTGQTPGQFRSQ 331 Query: 263 SR 264 R Sbjct: 332 LR 333 >UniRef50_Q00753 Msm operon regulatory protein n=8 Tax=Streptococcus RepID=MSMR_STRMU Length = 278 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 92/234 (39%), Gaps = 7/234 (2%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG-LYLAEMLYLPIDLIES 90 + I +GK + HTL + I L P + + + Y+ + E+ Sbjct: 43 IHFILEGKGKLTINQHTLDLAAGDIFLLPKDISTFYQADLQMPWSYI--WIGFSGSKAEN 100 Query: 91 FQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNH 150 K ++ + + +++ + T + + + +L +L Sbjct: 101 ILKQSSLFKRFYCHSGRSSKLFSQMMTIIQFANTPL-TSVNELLMVGELYKLLAALIEEF 159 Query: 151 VNHLLL--SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL-ASEGVSFQ 207 L + S ++ +++ ++ S+ G+ N +A+ L +S S L++ S +S + Sbjct: 160 PLSHLEESNSSTKAYVNQVKKIIHSQYGSSLRVNDIAKKLNLSRSYLYKIFRKSTNLSIK 219 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + VR+ + ++ I+EI+ G+ F++ F N F +P + RK Sbjct: 220 EYILQVRMKRSQYLLENPKLSIAEISNSVGFSDSLAFSKAFKNYFGKSPSKFRK 273 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNH--LLLSYSKQSLISRCYNLLLSEPGT 177 L + K+++ M L+SL ++ N LL+ + +R ++ S Sbjct: 114 ANLSHKSDLSCAEKLRKRSLMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIAN 173 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 W+ +A L +S S L ++L +E ++ +L + R+ AL ++ + + A G Sbjct: 174 DWSLTLIASELLMSPSLLKKKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCG 233 Query: 238 YKCPSRFTERFHNRFNITPREIRKASR 264 YK S F F F ITP E + + Sbjct: 234 YKSVSYFIAVFRKHFGITPTEYQDKRQ 260 >UniRef50_Q1LKT4 Transcriptional regulator, AraC family n=3 Tax=Proteobacteria RepID=Q1LKT4_RALME Length = 331 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 2/113 (1%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 + + SY + +L + LL + G T + V+ L++S TL R+L EG+SFQ I D Sbjct: 213 DWIFTSYHQHALRLKVRELLHVDLGR--TLDDVSSRLHMSSRTLMRKLQQEGLSFQGIKD 270 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++R + A+ + + EI+ G+ P+ F F + +TP R A + Sbjct: 271 ELRRDLAILHLVRNDSSLEEISDALGFSAPAVFHRAFRHWTGMTPGRYRAAQQ 323 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 89/243 (36%), Gaps = 16/243 (6%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYL-------P 84 L +++G E + + +++ E G + AE + + Sbjct: 36 LIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFE---VVGNFKAEFIVMGFYLKPES 92 Query: 85 IDLIESFQKLYTVTDQIRNKTSFF----LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 IE+ +++Y + + N +S F + + + +C E + + ++ Sbjct: 93 KSKIEALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKKGLLLYIKSI 152 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISR-CYNLLLSEPGTKWTANKVARYLYISVSTLHRRL 199 + + + N + S I++ + + +A+ L++S S++ R Sbjct: 153 ELFIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFMSESSISRLF 212 Query: 200 ASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 S+ G+ + L R+ A + + ISEIA G+ RF + F +P Sbjct: 213 KSQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKKYTGCSPTH 272 Query: 259 IRK 261 RK Sbjct: 273 YRK 275 >UniRef50_D2LGD7 Transcriptional regulator, AraC family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGD7_RHOVA Length = 354 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGV 204 L N L+ Q+ + L + +P + T +++A ++S STL RRL EG+ Sbjct: 237 LRQAPANLLVKYRGWQTWSALIRRRLRTLDPASWPTFDEIAAEFHLSSSTLRRRLDDEGL 296 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 S++ ILDD+R + A+S + T I IA + G+ S F F ++P R Sbjct: 297 SYRVILDDLRRDLAISLLSRTDATIQSIAFDLGFTESSAFHRAFKKWTGVSPGNYR 352 >UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TXY8_MARAV Length = 346 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 159 SKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 +++S + L+ + T A+ +AR ++S TL+R+L EG+SF +++ VR + Sbjct: 236 TRRSFSRKVRRLISRQMATDRIDADTLARQCHMSRQTLYRKLKKEGMSFHDLVEQVRKDK 295 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 AL + + EIA G+ S F+ F + P + R + + Sbjct: 296 ALRYVADDQYALGEIAFLLGFSELSAFSRAFKRWTGVAPAQFRASHQ 342 >UniRef50_Q094J0 Transcriptional regulator, AraC family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q094J0_STIAU Length = 657 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 5/176 (2%) Query: 93 KLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM----GVLLSLGV 148 ++ +R + + L C + + V + + + L +L Sbjct: 475 RIIPRAVSLRGPAPAYQERYGALFACPVRFQQPVDELLFSALDLARPLVSSSPELEALFG 534 Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 L +S+ ++L + G + + VAR L +S +L R+L+ SF+ Sbjct: 535 ARAEQLWEETGGDERVSQVRSVLRRQLSGEEPSIGGVARALGMSERSLQRKLSEAHTSFK 594 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 ++L +VR + A + TT ++E++ G+ P+ F +TP E R+ Sbjct: 595 ALLSEVRRDMAREQLATTDIELAELSFLLGFSDPNSLHRAFKRWEGMTPLEYRRKH 650 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 151 VNHLLLSYSKQSLISRCY-NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 +++LL S + + LL + + +A+ L++S TL RRL +E S+ + Sbjct: 220 LDNLLKSLRTGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQRRLKAENTSYGEV 279 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + R+ A + + +E+ G+ S FT F TP + R Sbjct: 280 VQQTRMQLAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPSDYR 330 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 130 bits (326), Expect = 6e-29, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 11/128 (8%) Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 K+ A ++L N N ++ + SL + T VA +L +S Sbjct: 210 KVLTGYADLIVLKKQKNAANEVVTQFVIDSLQHKV-----------PTLQDVAEHLGVSA 258 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 L R+ +G +F++I+DD+R A + + T ++ IA+ G+ S F F Sbjct: 259 RNLQRKFKQQGTNFKTIVDDIRKEYAFTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWT 318 Query: 253 NITPREIR 260 +TP E R Sbjct: 319 GMTPGEYR 326 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 4/148 (2%) Query: 118 CWEQLKTSVSRGFST-KIQEHLAMGVLLSLGVNHVNHLLLSYSKQS---LISRCYNLLLS 173 C++Q + ++ S + + LA + ++ + + + R + L Sbjct: 193 CFDQEENALVFPLSALEARPRLADPQVAAIARQQCEMEFRQWRTEDEGVMARRIRSALQD 252 Query: 174 EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 P + +A L +S TL R L G+S++ + D+ R A + + ISE+A Sbjct: 253 HPAPLPSLQGMAERLAVSARTLKRHLQQAGLSYRQLQDEERYQQARRLLVQSENSISEVA 312 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRK 261 GY + F++ F +TP R+ Sbjct: 313 YRLGYNDVANFSKAFKRWSGMTPSAYRE 340 >UniRef50_C4ZIP3 Transcriptional regulator, AraC family n=1 Tax=Thauera sp. MZ1T RepID=C4ZIP3_THASP Length = 358 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 60/117 (51%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 L ++ + +S S++ R +LL + G+ + VAR L+IS TL RRL +EG Sbjct: 238 LRKAPMDWIHVSVSERLFTHRVRDLLEAGLGSPQSVEDVARMLHISARTLARRLDAEGTH 297 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 FQ++ D +R + A++ I T +PI I + G+ P+ F F P R+A Sbjct: 298 FQAVKDALRRDVAIARISRTDEPIGSIGADLGFDDPAAFNRAFKQWTGSPPGSYRRA 354 >UniRef50_Q5YRJ4 Putative transcriptional regulator n=2 Tax=Actinomycetales RepID=Q5YRJ4_NOCFA Length = 351 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 21/230 (9%) Query: 49 LTVDNNQII------LFPCGYEFYIENYPEAGLYL--AEMLYLPIDLIESFQKLYTVTDQ 100 + +++ L P ++ ++ +++L ++L + Sbjct: 125 VEFRPGEVVAWINHELIPADVRTFLVERDVVAIHRVMSDLLGERLNLARAEFACPEPEHA 184 Query: 101 IRNKTSFFL-PQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYS 159 R + F + P+ + ++R Q + V + L+ + Sbjct: 185 ARMASVFGVRPRFGSEHTLFAIDPEVLNRPLPQANQPTW------QMCVAQCHELIRRRT 238 Query: 160 KQS-LISRCYNLLLSEPG-----TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 ++ + + LL G T T + VAR L +S TL RRL G S++++LD+V Sbjct: 239 ARTGIAAEVRERLLPGSGAMGVGTPPTIDAVARDLNMSARTLRRRLDEAGTSYRALLDEV 298 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 R A + + +IA GY + F F +TP R+A Sbjct: 299 RRALAEEMLTAAPLSVDDIAIRLGYAEATPFIHAFKRWTGLTPAAYRRAH 348 >UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUA5_9GAMM Length = 354 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 2/136 (1%) Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYI 190 +Q ++ L L + + + ++L ++ +L+S P TA+ A L + Sbjct: 214 PIVQSEASLREFLRLAPYPLVKRDVPGNLKTLSAKVEQILVSAGPERLPTASGAASQLNM 273 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S TLHRRL +EG SFQ + DD+R A+ + I IA G++ S F F Sbjct: 274 SPRTLHRRLTAEGTSFQQLKDDLRRELAVQYMHRDELSIDAIAAVMGFQDNSAFYRSFKK 333 Query: 251 RFNITPREIRKA-SRE 265 I+P + R+ RE Sbjct: 334 WTGISPGKFREQLQRE 349 >UniRef50_C1DHF9 Transcription activator in PHB biosynthesis, AraC family n=3 Tax=Azotobacter RepID=C1DHF9_AZOVD Length = 348 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 11/184 (5%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A L I+ + + +I N F + + + QL + +S Sbjct: 155 ARFTPLCIEFVHAEPIDTEEYARILNCPIRFNSSHFSIFFDATQLDSPLST--------- 205 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLH 196 A L S+ L + Q R L++ + T ++A L +S TL Sbjct: 206 -ADAALASMHERFAEQRLHEQNSQLSTWRVQQLIMERLSDGEPTIEEIAGTLCVSKRTLQ 264 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R L EG ++ +L++ R A + + + E+A G+ S F F +TP Sbjct: 265 RCLKKEGTQYKDLLNETRREQAHLYLCHSHFSLQEVAYLLGFHEHSSFFRACSRWFGMTP 324 Query: 257 REIR 260 + R Sbjct: 325 GQYR 328 >UniRef50_C5T965 Transcriptional regulator, AraC family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T965_ACIDE Length = 346 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 13/217 (5%) Query: 60 PCGYEFYIENYPEA--GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFF-LPQNPELI 116 Y + P+A +Y + + + F+ LY + + P EL Sbjct: 129 NATYTLDVVLTPDAQDPIYRFALEFSCAAHLTIFRDLYGSNFKFSSLCLACPKPGYAELY 188 Query: 117 YCWEQLKTSVSRGFSTKIQEHLA--------MGVLLSLGVNHVNHLLLSYSKQS-LISRC 167 + + S+G + + + V + V + L S + S+ Sbjct: 189 EEYFDCPVNFSQGVNQWRIDAIWVDSPRKMPDAVAHLMAVEYCQKFLSELSHVGGVASQV 248 Query: 168 YN-LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 LL P T + +A L + TL RRL +EG +++ +L R A+ ++ Sbjct: 249 RRALLEKTPANFPTIDLMAEELGMQERTLRRRLEAEGTTYRELLAGARKLLAIDYLRANK 308 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +IA GY + F F+ TPR RK + Sbjct: 309 LKTMDIATRLGYSDVANFRNAFYRWTGHTPRHYRKQN 345 >UniRef50_Q1YPC6 Transcriptional regulator OruR n=4 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YPC6_9GAMM Length = 333 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 50/100 (50%) Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 + R LLL TA VA+ +Y+S STL RRL EG FQ +LD VR AL + Sbjct: 227 VSERVVQLLLLSGSEFPTAAAVAQQMYMSESTLQRRLTREGTRFQPLLDQVRYRLALEYL 286 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 Q T P +EIA G+ + F F TP IR+A Sbjct: 287 QGTDLPAAEIAALLGFNNSANFRRSFKRWSGTTPLHIRQA 326 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGV 204 L +S + SL R NL+ ++ +VA LY++ TLHRRL E Sbjct: 236 LATYPAELFRISPEEHSLAIRIRNLIGNDFQRPLPGLQEVAERLYMTTPTLHRRLREEQT 295 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 SFQ I D R + A+ + + SE++ G+ S F F +TP++ RK Sbjct: 296 SFQQIKDHCRRDAAIGYLSSAQYTTSELSELMGFSDSSTFHRAFKKWTGLTPQDYRKKH 354 >UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2D8_MARAV Length = 343 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 4/139 (2%) Query: 130 FSTKIQEH---LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVA 185 F ++ H A LL+L + + K+ ++ + ++ + T + VA Sbjct: 196 FPAELLSHASPHAEPELLALHERFASEQVARLEKKDIVGQVERIIAELLDSGEVTLDAVA 255 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 L I TL RL SF +L D R A + TT + I EI G+ PS F Sbjct: 256 ERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQLLATTDESIDEIVYLTGFSEPSTFY 315 Query: 246 ERFHNRFNITPREIRKASR 264 F +TP E RK ++ Sbjct: 316 RAFKRWSGMTPIEYRKTAQ 334 >UniRef50_A6F8A8 Transcriptional regulator, AraC family n=1 Tax=Moritella sp. PE36 RepID=A6F8A8_9GAMM Length = 345 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGV 204 L + + L+ K +L + L+ S ++ T +++A L +SV ++ R L EG+ Sbjct: 212 LQLEKKMAVNLALDKMTLTEKIERLIHSSIANSEPTLDEIAAMLNMSVRSISRSLKEEGL 271 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +F+ IL R A+ + T PI I+ GYK FT F F +P R+ +R Sbjct: 272 TFRDILKQKRQELAVHYLTKTEDPILTISENLGYKNMGNFTRAFQTWFAQSPSHYREKNR 331 Query: 265 E 265 E Sbjct: 332 E 332 >UniRef50_C9YEB3 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YEB3_9BURK Length = 394 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 81/187 (43%), Gaps = 16/187 (8%) Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 A+ + P +++ L+ + F + + E LK + R + +Q+ Sbjct: 220 QADFPFEPPPHADAYAVLFPGPTR-------FQQARAAIAFDAEYLKLPLRRDEKS-LQQ 271 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 L + L++ + LL + + LL ++P +A +A L +S TLH Sbjct: 272 MLQHALPLTVHQYRRDRLL--------VQQVRQLLSAQPQDTHSAEALAALLNVSPRTLH 323 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R+L EG + Q++ D+VR A + + +PI ++A G++ F F TP Sbjct: 324 RQLREEGATLQALKDEVRHGKASELLLRSQRPIKQVAEAAGFQNEKSFIRAFKTWSGQTP 383 Query: 257 REIRKAS 263 E R+++ Sbjct: 384 AEFRRSA 390 >UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH05_DESAA Length = 338 Score = 128 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%) Query: 59 FPCGYEFYIENYPEAGLYLAEMLY---LPIDLIESFQKLYTVT---DQIRNKTSFFLPQN 112 P G + A ++ A MLY L +E + + +++ +F Q+ Sbjct: 139 LPVGASVD--AFMAAAVFYARMLYDASLNPVKVEFMHEKWGEGREYERLFQAPVYFAMQD 196 Query: 113 PELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCY-NLL 171 +++ + ++ A + V L + L + LL Sbjct: 197 NAIVFSPQDAHKTLLT----------ANAEIAMQNDKLVFDYLARCKTERLDQQVRSRLL 246 Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISE 231 S P + + A+ + IS +L R L ++G SF ILD+ R + A + I+ +++ Sbjct: 247 KSLPLGEPSIETTAQSMGISPRSLQRHLRNQGTSFTEILDETRKHLAENLIRYPHLSVTD 306 Query: 232 IARENGYKCPSRFTERFHNRFNITPREIRK 261 +A + GY S F+ F F +P ++ Sbjct: 307 VAFQLGYSDSSNFSRAFRRWFGKSPNMYKR 336 >UniRef50_A7IPD7 Helix-turn-helix-domain containing protein AraC type n=69 Tax=Proteobacteria RepID=A7IPD7_XANP2 Length = 347 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 8/152 (5%) Query: 113 PELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLL 172 P ++ ++ + + G N L+ Q L +R L Sbjct: 190 PHSRLAFDAAFLTLPTTRGERALKEFLRGA-------PANILVRYRHDQGLAARVKARLR 242 Query: 173 SEPGTKWT-ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISE 231 + P T W +AR L + STL RRLA EG +++ I D++R A + ++ KP+ E Sbjct: 243 AVPATAWPGFEDLARQLRLPASTLRRRLADEGQTYRDIKDELRRVLAEALLREGAKPVGE 302 Query: 232 IARENGYKCPSRFTERFHNRFNITPREIRKAS 263 IA E G+ PS F F +P R+ S Sbjct: 303 IAAELGFSEPSAFHRAFRKWTAQSPGAFRRVS 334 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 8/189 (4%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A++ P+ + ++ R + S +P + V + Sbjct: 159 AQLTGSPVPGTQVLRRGPEPNHFHRFRRSIGVPVDYGASED-----ALVIPASQLNLPVQ 213 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 + L L + R ++ + +VA LY+S TL Sbjct: 214 FSNDQLAISSREQCETALKQLKEDAGFACRVRRVIETSHPFPPKLARVASTLYVSERTLK 273 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL E SFQ+++D VRL A + +T +S+IA GY + FT F ++P Sbjct: 274 RRLQEEEASFQALVDQVRLERARDLLASTTMNLSQIADSLGYADAANFTRAFKRWTGLSP 333 Query: 257 REIRKASRE 265 R +RE Sbjct: 334 SHFR--NRE 340 >UniRef50_A6GTF5 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF5_9BURK Length = 342 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 145 SLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 ++ + LLL + S +R LL S PG WT +VA + ++S TL R L E Sbjct: 220 AMALARCEQLLLEQRRPSNWAARVTELLRSNPGQIWTCEQVASHFHLSSRTLMRYLRDEQ 279 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S+Q++ D A ++ + + +A GY+ S F F F ++P+ + S Sbjct: 280 TSYQTLRDSELARQAKLSLLVSNNTVESVALSLGYQEVSNFRRAFKRWFGMSPQAFIEQS 339 Query: 264 R 264 R Sbjct: 340 R 340 >UniRef50_Q2S7F1 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7F1_HAHCH Length = 327 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 10/185 (5%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 M + I L + + +I F ++ + + + Sbjct: 152 RMQGVEIHLSYAEPPHLELYREIFQAPVRFRQTFTGILIPFSVARQPLPSADPMA----- 206 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRR 198 SL + + L R +L + G + ++A L++SVSTLHR+ Sbjct: 207 -----ASLFTKRCESIQHDERDEQLPRRVKEMLYAGAGEFPSQTELASRLHMSVSTLHRK 261 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 LA +G +++++L +V+ AL ++ + + EIA+ G+ S F F TP E Sbjct: 262 LAEQGAAYKALLAEVKKELALQHLRDSRLTVDEIAQLLGFSDASNFRRAFVGWTGETPSE 321 Query: 259 IRKAS 263 RK S Sbjct: 322 FRKRS 326 >UniRef50_Q1DD76 Transcriptional regulator, AraC family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DD76_MYXXD Length = 348 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 73/221 (33%), Gaps = 20/221 (9%) Query: 60 PCGYEFYIENYPEAGL-YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC 118 P G ++ P L Y + L + T SF P +L Sbjct: 126 PDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGRQLTEHPWNPRHVSFAHPAPADLRPL 185 Query: 119 WEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS----------------YSKQS 162 + V+ F L+L V + +LLS Sbjct: 186 EQHFG--VTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPRTPP 243 Query: 163 LISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 + + + L + VAR L++S TL RRLA SFQ +D VR A Sbjct: 244 FLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELAFDY 303 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 ++ +SE+A GY S F F +TPR R+ Sbjct: 304 LRDAHLGVSEVAFLLGYSELSTFDRAFKRWTGMTPRVWRER 344 >UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC3_DESAD Length = 293 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 10/258 (3%) Query: 13 EIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 + + K H V +L + +G K I+ + + + G E PE Sbjct: 26 QFQSRKSKIRHEVCVSQHSLVFVLEGTKYIHSADGDMVIRKGEAFFCRKGCHLMSEMIPE 85 Query: 73 AGL-YLAEMLYLPIDLIESFQKLYT-----VTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 G + + + ++ +F + + R+ + + + Sbjct: 86 DGGTFDTVLFFFDDAILGNFVDQLSAEKNQIASTDRSAFRIKVTEQVSIYLSSMLSLFDS 145 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY---SKQSLISRCYNLLLSEPGTKWTANK 183 G + +L + N +S+ + S ++ + Sbjct: 146 PLGKNDDFLRLKVNELLHYIYTASGNDEFVSFLVACRNSSRGDLSAVMERYFNKNISLET 205 Query: 184 VARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 VA S+S+ R + + + R++ A ++ + K I+EI+ E+GY+ S Sbjct: 206 VAELSGRSLSSFKREFKKTFNTTPARWIRERRMSWAEQLLRNSAKSITEISYESGYESLS 265 Query: 243 RFTERFHNRFNITPREIR 260 F+ F + +TPRE R Sbjct: 266 HFSTLFRKNYGVTPREYR 283 >UniRef50_C7PMQ7 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PMQ7_CHIPD Length = 331 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 7/175 (4%) Query: 94 LYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNH 153 L + + + + Q E + + ++ H LLS Sbjct: 156 LLRKVKPVSVRLPYRVEQESEYTRVFRCEIEKSAEEYALVFDNHYWTEPLLSANYEIQRT 215 Query: 154 LLL------SYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSF 206 LL S + S + + LL+ + +++A +S TL R+L EG+S+ Sbjct: 216 LLQNVAANNSTAGDSFKEKIHQYLLTNAYLGIRSLSEIAANFNVSPRTLQRKLKEEGISY 275 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 Q + D+VR + A+ ++ P+ I+ GY S FT F TP +K Sbjct: 276 QDVADEVRKSLAIHYLEEGDYPVKTISYMLGYNELSAFTRAFKRWTGKTPVSYQK 330 >UniRef50_B1J547 Transcriptional regulator, AraC family n=24 Tax=Bacteria RepID=B1J547_PSEPW Length = 361 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 11/169 (6%) Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY 158 + + F L L+ + + + Q LL L H +L Sbjct: 185 QPLCSTAVQFGASGNRLRLGRATLELANPQHCPSTWQH------LLQLCETH---MLQRT 235 Query: 159 SKQSLISRCYNLL--LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 +SL R +LL L G + +VA L + TL R+LA EG F+ +L+D R + Sbjct: 236 RVRSLGERITHLLGPLLNGGREPGLEEVALRLQLPAWTLRRKLAEEGTRFRDLLNDTRRD 295 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 A + I+ T EIA G+ F F +TP R++ R+ Sbjct: 296 LAEAYIRDTELSFGEIAYLLGFASAEAFQRAFKRWTGLTPGGFRRSQRQ 344 >UniRef50_B5JS07 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS07_9GAMM Length = 359 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 6/188 (3%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A + + ++ + F C E + + +H Sbjct: 176 ARWIGAKQLSPIQVRFCHSEPPYVEEYQRLFDCSLAFDCECTEVIFPL--DYLDMPVVQH 233 Query: 138 LAMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTL 195 V+L + + LL + + + ++ L P + T VA + S TL Sbjct: 234 --DPVMLDMMDAYAERLLSEFGQREGVLGDVRRHLTELLPKGEATLEAVASEMACSPRTL 291 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRL+ +FQS+LDD R + A I EIA G+ S F F +T Sbjct: 292 QRRLSEADSNFQSVLDDTRKDLAQHYIGQPFIDPIEIAFLLGFADQSTFYRAFKRWMGMT 351 Query: 256 PREIRKAS 263 P + R+ + Sbjct: 352 PGQYRERN 359 >UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q481H7_COLP3 Length = 344 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 9/153 (5%) Query: 111 QNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNL 170 + E ++ ++L + R AM +LLS N +N + +K + Sbjct: 201 PHNEFVFDDDKLLLNTPRSNP------FAMPLLLSQCDNVLNSV---ATKNEFLITINQW 251 Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 + + A +A LY++ TL R+L+ +G SF+ I+ ++R + A I T I Sbjct: 252 IAANMHKDLCAENLASDLYLTPRTLRRKLSEQGTSFRDIVKELRCSAAKKLIIETQLTIE 311 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +I G+ S F F TP +R+ + Sbjct: 312 DIGCAIGFNDVSNFRAAFKKWTGQTPSNLRQIN 344 >UniRef50_A7HP74 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP74_PARL1 Length = 354 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 49/99 (49%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 + ++L G + +R+L +S TL RRLA+EG S++ I+DDVR + A Sbjct: 219 GMSGNVRRMILGARGHLPALGEASRHLNMSERTLRRRLAAEGTSYRGIVDDVRNHLARGY 278 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + T ++++A G+ + F F TP+E R Sbjct: 279 LGETPLCVADVASLLGFDDVANFRRAFKKWNGCTPQEFR 317 >UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480T9_COLP3 Length = 331 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK---WTANKVARYLYISVSTLHRRLASE 202 L + + + + S QS ++ +L+ + + +A L +S TL RRL E Sbjct: 210 LRDSPADLITIPGSGQSFKAKIRAILIHDESDILFCPSFEILALSLNMSAQTLRRRLKVE 269 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G S+ I D++R + A+ + T + I++I+ G+ P FT F ++P + +A Sbjct: 270 GTSYPMIKDEIRRDLAIDYLVMTNRNITDISTALGFSEPRSFTRAFKQWTGVSPSKYNRA 329 >UniRef50_Q2SAU6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SAU6_HAHCH Length = 338 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 4/136 (2%) Query: 130 FSTKIQEHLAMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEP-GTKWTANKVARY 187 +++H +L+L + + LLL + + + + L + + K AR Sbjct: 201 LDLPLRQH--DPAMLALLDEYADRLLLQLNPEANFSDKVKAALTNLLQAGDISLQKTART 258 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L +S L RRL EG S+Q ILD+ R AL I +SEI G+ S F Sbjct: 259 LNLSARALQRRLQEEGCSYQQILDETRRELALRQISDERLDLSEITFFLGFADQSAFQRA 318 Query: 248 FHNRFNITPREIRKAS 263 F TP + R+ Sbjct: 319 FKRWTGRTPGQYRREQ 334 >UniRef50_P68913 Uncharacterized HTH-type transcriptional regulator Rv1395/MT1440 n=15 Tax=Mycobacterium RepID=Y1395_MYCTU Length = 344 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 11/211 (5%) Query: 59 FPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTV-----TDQIRNKTSFFLPQNP 113 P + AG+ +A + L + + + +R + Sbjct: 138 LPADVRGFFIERDIAGI-IATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDV 196 Query: 114 ELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY-SKQSLISRCYNLLL 172 ++ F + + A L + + + L+ ++ + + + L Sbjct: 197 AFGRAHNRVHFP-RAMFDEPLPQ--ADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLF 253 Query: 173 SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEI 232 + G T VA L + TL RRLA EG SF+++L + R A+ ++ + ++ Sbjct: 254 RDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQV 313 Query: 233 ARENGYKCPSRFTERFHNRFNITPREI-RKA 262 + GY S F+ F + + P E R+ Sbjct: 314 STRLGYTEVSTFSHAFKRWYGVAPSEYSRRG 344 >UniRef50_Q5P369 Transcriptional regulator, AraC family, n=5 Tax=Betaproteobacteria RepID=Q5P369_AZOSE Length = 378 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 55/108 (50%) Query: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 +L + ++ R +LL + VA L++S TLHRRL EG SF++I D +R Sbjct: 247 MLYRRDRDMVYRVRDLLRDALPDNLSLEAVANRLHLSARTLHRRLEEEGSSFRTIKDALR 306 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + AL+ + T +PI++I E GY PS F ++P R+ Sbjct: 307 RDIALARLTKTAQPIAQIGAELGYADPSAFYRAVVAWTGMSPERFRRQ 354 >UniRef50_Q1N2P4 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N2P4_9GAMM Length = 348 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 48/103 (46%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 K SL++ +L+S G +A +S TL R+LA+ G S+Q IL+ VR + + Sbjct: 243 QKDSLVNEIQQILISCAGDYPDIEMLASAFNVSSRTLRRQLANVGTSYQKILNKVRCHLS 302 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + + T I +I+ G+ + F F TP RK Sbjct: 303 IEYLSKTDIAIEDISNLIGFSDVTNFRHAFKKWVGQTPSYYRK 345 >UniRef50_C3JN73 Transcriptional regulator, AraC family n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JN73_RHOER Length = 379 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 95/250 (38%), Gaps = 11/250 (4%) Query: 25 VKPLMPALCRIRQGKKVINWETHT-LTVDNNQIILFPCGYEFYIENY-PEAGLYLAEMLY 82 V + AL G VI + + + +++L P G+ IEN P L+ Sbjct: 126 VPAGVRALHIAEHGDIVIRTQGKAPIELGPGELVLLPHGHAHTIENAMPMHPKNETCWLF 185 Query: 83 LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-------FSTKIQ 135 L + + + E + +L + ++I Sbjct: 186 GTFTLDDVAAQRLLSVLPDFVELRATQGTPVEWLDVSSRLLGAEVDDPKPGSSVMVSRIL 245 Query: 136 EHLAMGVL-LSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 + L + +L + N L+ + I + + ++P WT +++A +S S+ Sbjct: 246 DLLFVQILRAWARADGSNGGWLTAAMDPRIGQALEAVHNDPSRNWTIDELATLSTLSRSS 305 Query: 195 LHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 R + G + + + + RL+ A + T +P+ IA GY+ + F+ F RF+ Sbjct: 306 FAERFSRLVGQTPGAYITERRLDRAAELLVQTTEPVGTIAITVGYESDAAFSRAFRRRFD 365 Query: 254 ITPREIRKAS 263 +P RK++ Sbjct: 366 ASPLNWRKSN 375 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 42 INWETHTLTVDNNQIILFPCGYEFYIENYPEA---GLYLAEML--YLPIDLIESFQKLYT 96 + + ++ ++ +L + YPE + AE + YL + + Sbjct: 19 VYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLKANNLRDISDCRE 78 Query: 97 VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL 156 ++ + F + W F E +A L + + L Sbjct: 79 YPSYLKINFADFSLIKG--LISWANHCAEYIEIFD----ESIAFTCLSAFSSEKQFGVFL 132 Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 +S ++ ++ ++ W ++ LY+S S L R+L EGVSF I+ D R+ Sbjct: 133 FECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVSFSKIILDERMQ 192 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 A + T PIS++A+ GY S FT F F ++P + + S E Sbjct: 193 MAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSE 241 >UniRef50_C6W363 Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W363_DYAFD Length = 290 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 10/250 (4%) Query: 24 RVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYL 83 R+ + + G K I + T V ++++ G E L+ + + Y Sbjct: 36 RIVLNQNMINVLVSGTKTIIYPDATAVVQAGELVVLSTGNVLTSELLAGRDLFTSVLFYF 95 Query: 84 PIDLIESFQKLY-----TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG--FSTKIQE 136 ++ F Y T + Q+ + + L + +S G ++++ Sbjct: 96 SNEVFNRFLIKYEHLIKGNTPTASRQPFLIFKQDSFISHFITSLMSLLSNGGKLPAEVRQ 155 Query: 137 HLAMGVLLSL--GVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 +LL + H + ++ + ++ S+ G T + +A ++S ST Sbjct: 156 LRIEELLLYMLHADPQKFHSIQIITRDKQQLQIKKVVESQIGKPTTVDDLAFLCHMSTST 215 Query: 195 LHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 R+ S Q L RL A +++ + S I + GY+ S F+E F N F Sbjct: 216 FKRKFNEIYQTSPQKWLLAKRLELAADLLRSYDESPSGIYMKVGYQNHSSFSEAFRNHFG 275 Query: 254 ITPREIRKAS 263 TP + ++ Sbjct: 276 STPSDYQQMH 285 >UniRef50_B5JW86 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JW86_9GAMM Length = 320 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 2/123 (1%) Query: 145 SLGVNHVNHLL--LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 + V LL L +L + LL + G + VA L++S TLHR L E Sbjct: 198 KMSVEQCEALLERLPKLNHNLATAIQRRLLMQHGELPSQELVAEELHMSTRTLHRLLQRE 257 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G SF+ I+ +V A ++ + IS+IA E GY + FT F P R+ Sbjct: 258 GTSFREIVKEVLTVQAKRLLENSELSISQIALELGYSDSANFTRAFKKATGQAPSAFRQP 317 Query: 263 SRE 265 S + Sbjct: 318 SHQ 320 >UniRef50_A4XVD3 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XVD3_PSEMY Length = 336 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 54/106 (50%) Query: 159 SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 ++QS+ SR +LL + G + + AR +++ TLHRRL +EG SF+S+L++VR A Sbjct: 229 AEQSMSSRVRRVLLEKQGGFPSLSLTARLFHLTPRTLHRRLQAEGTSFKSLLEEVRHTLA 288 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++ + EIA GY + F F +P R + Sbjct: 289 QEHLKAGRMTVEEIAYSLGYTDLANFRRAFKRWQRQSPSAYRAEQQ 334 >UniRef50_Q0BZ29 Transcriptional regulator, AraC family n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZ29_HYPNA Length = 338 Score = 126 bits (318), Expect = 5e-28, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 143 LLSLGVNHVNHLLLS-YSKQSLISRCYNLLLSEPGT-KWTANKVARYLYISVSTLHRRLA 200 L+ L ++ L + + L + N L S+ G + A+ L S TL RRLA Sbjct: 213 LVRLLTQRLDKRLAALHEGVGLPEKVRNCLHSQMGRVPPSMAGTAQLLGFSERTLRRRLA 272 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 EGV+F +L R A ++ ++EIA GY S F F ++P R Sbjct: 273 EEGVNFAQLLQGARKEAAEIYVREGKLTLTEIAHATGYSDQSAFVRAFRGWHGVSPGAYR 332 Query: 261 KASR 264 + R Sbjct: 333 REVR 336 >UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q0VNT5_ALCBS Length = 337 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 1/124 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLAS 201 LL L + + KQ L+++ L+ +VA L I L RLA Sbjct: 209 LLYLHEQLASEQVARLEKQDLVAQVNRLIGELLESGHANLEEVAERLGIKARQLRTRLAD 268 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 G +F ++ D R A + T + I EI G+ PS F F +TP E RK Sbjct: 269 AGTNFNQLVADYRCRLAKRLLAGTDESIDEIVYLTGFSEPSTFYRAFKRWVGMTPIEYRK 328 Query: 262 ASRE 265 E Sbjct: 329 LKAE 332 >UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS family protein n=3 Tax=Vibrionaceae RepID=Q1ZVW8_PHOAS Length = 292 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 16/236 (6%) Query: 45 ETHTLTVDNNQIILFPCGYEFYIENY--PEAGLYLAEMLYLPIDLIE----SFQKLYTVT 98 + + +IL IE+ P+ Y +++ D I S Q+L V Sbjct: 52 GHYQGDFEQASMILIAPNVPHGIESISTPDTKDYETIVVWFKQDWIANMMFSCQELRKVD 111 Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY 158 ++ L +KT + F + + L + + LLS+ Sbjct: 112 SLLKRAEKGLLFSPETTQKVITIVKTIDEKHFDPINLLANLIHIFEVLCQDKSSQTLLSH 171 Query: 159 SKQSL---------ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQS 208 + +S I R + T VA ++ S ST+HR +F Sbjct: 172 NVESKNHDHCNKEKIERLCAFIDQHYAEPLTLEYVANFICTSESTIHRLFEQHFNETFIQ 231 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 L +RLN+A + ++ +PIS +A + GY+ + F +F N+TPRE R+ + Sbjct: 232 YLKKLRLNHASELLVSSSEPISHVAEQVGYRNQANFNRQFKQYKNMTPREYRRTYK 287 >UniRef50_B9LZS6 Transcriptional regulator, AraC family n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZS6_GEOSF Length = 324 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%) Query: 148 VNHVNHLLLSYSK----QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 ++ ++ LL SK + L ++ + KWT VA+ L +S ++ R+L EG Sbjct: 200 ISGLDDFLLQKSKIVQRECLSDSVEAIVKQDLNHKWTLKSVAQSLNMSERSMQRKLQDEG 259 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +F+ +L++ R+ A S + + ++EI G+ S F++ F P + RK + Sbjct: 260 QTFRKLLNNARIRTAESYLLNSQLSLTEIGYLTGFSDYSHFSKEFKRYSGTNPSQYRKGT 319 >UniRef50_A4CME3 Transcriptional regulator, AraC family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CME3_9FLAO Length = 325 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Query: 163 LISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 L+ + NLL + + +V+ +L +S TL RRL+ ++F+ ++ + AL+ Sbjct: 224 LMKKIDNLLNQSISSGIPSIEQVSEFLNMSARTLKRRLSERNLTFRKLIQKKQKETALNL 283 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + + + + EIA G+ S F F +P RK+ Sbjct: 284 LSNSNQSVGEIAFLTGFSEQSAFNRAFKRWTGTSPTAYRKS 324 >UniRef50_A3QFM4 Transcriptional regulator, AraC family n=1 Tax=Shewanella loihica PV-4 RepID=A3QFM4_SHELP Length = 337 Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 8/188 (4%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLP---QNPELIYCWEQLKTSVSRGFSTKIQEHL 138 Y + S + + Q+ + P + GF + E Sbjct: 149 YFSLQFQNSVCSMLALARQLTGQMVTLERVQLATPAHDSEFLAAFCQADVGFDGEFFEWA 208 Query: 139 AMGVLLSLGVNHVNHLLL----SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 +LSL V + LL + SLI + +L + +A L +S T Sbjct: 209 ISHEMLSLPVVYDFSLLQLDKQALHDTSLIEKVLAILNQDFPNNPKLESMALRLNMSDRT 268 Query: 195 LHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNI 254 L R LAS G S+Q ++D VR A+ I K I +IA G+ S F + F + + Sbjct: 269 LRRHLASAGTSYQKLVDQVRCQTAIGLIVQGDKSIVDIADIMGFGDVSHFRQSFKHWLGL 328 Query: 255 TPREI-RK 261 P + RK Sbjct: 329 PPGQFIRK 336 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 126 bits (317), Expect = 6e-28, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGT-KWTANKVARYLYISVSTLH 196 A + +S+ L+ + + L + PG ++ + +AR + S TL Sbjct: 237 ANPLTVSMCEQMCVQLVEARRARVGTSEMVRQYLTATPGNVPFSLDDIARLMNTSPRTLK 296 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL EG +F+++L R A + + ++E+A G+ S F++ F + + P Sbjct: 297 RRLQEEGTTFRTLLAQARGAMAETLLGDAHLSLTEVAERLGFSDLSSFSQAFKRWYGVPP 356 Query: 257 REIR 260 R Sbjct: 357 GTYR 360 >UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MT39_SACVD Length = 321 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%) Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWT 180 L ++ + +H A ++ LL ++ R + LL+ G Sbjct: 174 LPRALLDRRMPQANDHTA-----AVCEQQCRELLAKRRERGGTARRVRDRLLATDGLHTD 228 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 + VA L ++ TL RRLA+EG S+++++D+VR A + T + ++A GY Sbjct: 229 MDTVAAELAMTARTLRRRLAAEGTSYRALVDEVRQTLAEELLATRSLSVEQVAYRLGYGD 288 Query: 241 PSRFTERFHNRFNITPREIRKASR 264 + F F + P ++ R Sbjct: 289 AASFVRAFTRWKGVPPGRYARSGR 312 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 4/190 (2%) Query: 76 YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQ 135 +L+ I+ E F D + S + K ++ Q Sbjct: 164 FLSLFSKELIEQSEVFLDWEESNDYQCIELSKVKIHFSQKRNGLRFPKFFLNCKNKNADQ 223 Query: 136 EHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCY-NLLLSEPGTKWTANKVARYLYISVST 194 + L + L+ + + L LL + T +A L +S T Sbjct: 224 VSFQQAL---LYCENDKGRLVKENIRDLQKSIRSELLYNSSNGYPTLPMIAERLNMSERT 280 Query: 195 LHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNI 254 L R L ++G +F I+ DVR A +Q I +IA GY+ + F F F Sbjct: 281 LKRHLQAQGTTFLQIVADVRFTEAKKMLQHKQYSIQDIASIVGYEEATNFIRAFKKTFGE 340 Query: 255 TPREIRKASR 264 TP + RK S+ Sbjct: 341 TPSQYRKRSQ 350 >UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family) protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E6_9GAMM Length = 340 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 1/142 (0%) Query: 124 TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTAN 182 T V + ++ A LL L + + +Q LI +L T + Sbjct: 189 TMVFDSCALSVESDHAQPELLKLHEQLASEQVAKLEQQDLIHDVQRVLGELLDSQAITLD 248 Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 VA L ++ L L+ G +F ++ + R A + T + I +I G+ PS Sbjct: 249 AVAERLGMTQRYLRSALSQAGTTFNQVVAEYRCMLAKHLLMKTNETIDQIVYLTGFSEPS 308 Query: 243 RFTERFHNRFNITPREIRKASR 264 F F +TP + RK ++ Sbjct: 309 TFYRAFKRWTGLTPLDYRKQAK 330 >UniRef50_P72171 Ornithine utilization regulator n=7 Tax=Pseudomonas aeruginosa group RepID=ORUR_PSEAE Length = 339 Score = 126 bits (317), Expect = 7e-28, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 1/126 (0%) Query: 138 LAMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 LA + + LL + ++ L++R LLL+ PG + AR L+ S +L Sbjct: 213 LANPATVQMCEQQCEALLATLDVQEGLLTRVRRLLLARPGDFPDLEQAARELHTSGRSLR 272 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R L+S G ++Q +LDDVR AL + TT P+ EIA G+ S F F P Sbjct: 273 RHLSSLGTTYQQVLDDVRKRLALQYLTTTQLPLYEIALLLGFNDSSNFRRAFRKWTGKLP 332 Query: 257 REIRKA 262 + R+A Sbjct: 333 SDYREA 338 >UniRef50_Q0VLF5 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VLF5_ALCBS Length = 336 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%) Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 L + + + + + LL E G + N +AR L +S +L R+L Sbjct: 215 ALTRMLEQQCQQRMDTVESSGIAGKVRQKLLGELGLGASLNDMARDLALSTRSLRRKLEQ 274 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EG S++ ++++ R AL + T I E+A Y F F +P R+ Sbjct: 275 EGTSYRDLVEEERRQLALQLLGNTTMKIEEVAAHLAYTDAGGFVRAFRRWQGCSPSTYRE 334 >UniRef50_D0C0B4 Virulence regulating protein n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0C0B4_9GAMM Length = 330 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 160 KQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 ++ + +LL P T VA+ L +S TL R L E +F+++LD R + A Sbjct: 226 DATVSEKVKAILLENLPAGLCTIEDVAQRLAMSKRTLQRLLLEERTNFKTLLDATRQSLA 285 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 ++ + EI+ G++ + F+ F N TP+E R Sbjct: 286 QHYLEKSSMSTGEISFLLGFQEHNSFSRAFKNWTGNTPQEYR 327 >UniRef50_B5JRR7 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRR7_9GAMM Length = 339 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 10/167 (5%) Query: 100 QIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYS 159 ++ F Q ELI+ E L + S + ++ + VL L S Sbjct: 180 EVFGPNLVFQAQRNELIFETEWLDIELPSA-SPEFRKLSSQKVLSELSKL--------PS 230 Query: 160 KQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA 218 + +L++R + G + KVA L + TL RRL E V++ ++ D V +A Sbjct: 231 QDNLVARVVRCIEDHIGHSVLSMQKVADKLNTTPRTLQRRLKEENVTYAALRDQVLYKHA 290 Query: 219 LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 + T ++ I+ + P+ F F ++P RKA+R+ Sbjct: 291 RRYLIETDLDMATISANLSFSEPATFNNAFKRWSGMSPGAYRKANRK 337 >UniRef50_Q488V2 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q488V2_COLP3 Length = 339 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 155 LLSYSKQSL--ISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 L++YS Q+L I + +LL + P ++A L +SV T+ R+L +E ++ I D Sbjct: 230 LITYSFQTLGFIRQIKDLLSACPYARFPNQLELAEQLGVSVRTMQRKLDAENSNYMQIKD 289 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 D+R A+ ++ T K + EIA G+ + FT F +P + Sbjct: 290 DIRQRKAIFYLEHTDKRLDEIAERCGFSEMASFTRAFIRWTGCSPSKY 337 >UniRef50_Q4KC58 Transcriptional regulator, AraC family n=14 Tax=Pseudomonas RepID=Q4KC58_PSEF5 Length = 397 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 1/116 (0%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT-ANKVARYLYISVSTLHRRLASEGV 204 L N L+ +SL SR L PG +W + +A+ L +S STL RRLA EG Sbjct: 272 LAHAPANILVKYRDPESLASRIKQQLRQLPGEQWPESESLAQSLCMSASTLRRRLAEEGQ 331 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 S+Q++ D VR A+ + +EIA G+ S F + F P R Sbjct: 332 SYQALKDSVRKELAIVWLAEPQISFAEIAGRLGFADTSSFYKAFRKWSGSNPGHYR 387 >UniRef50_C7PKQ0 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PKQ0_CHIPD Length = 293 Score = 126 bits (316), Expect = 9e-28, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 95/274 (34%), Gaps = 15/274 (5%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGY 63 R + + I + + +RV + + +G+K + + T TV++N I+ G Sbjct: 16 RAEDRILIRPYTSPCNTKKNRVILHRNMINLLIEGRKTVIYGGQTTTVNDNAILFLAAGS 75 Query: 64 EFYIENYPEAGLYLAEMLYLPIDLIESFQ-------------KLYTVTDQIRNKTSFFLP 110 + G + + +LY D + F K I + FL Sbjct: 76 CLTTNVKSDNGNFQSVLLYFSDDALLDFYMKYDRLVQAQQQDKQLPAASFITFEKDVFLR 135 Query: 111 QNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNL 170 E + QL + + E L + LL + L + + Sbjct: 136 NYIESVRHLLQLGQPLPQEICILKFEELLL-YLLQTAPETLLQLKANATGSMQDFEIRKA 194 Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPI 229 + T ++A +S+ST RR G S Q L + ++ A + Sbjct: 195 VEGNITRPVTVEELAFLCSMSLSTFKRRFTKIYGTSPQRWLLEQKMQVAARLLLDQQAKP 254 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 ++ + GY+ S FT+ F F +TP ++ + Sbjct: 255 GDVYDQVGYESHSSFTKAFRQVFGMTPSAYQEQN 288 >UniRef50_D0I5P8 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I5P8_VIBHO Length = 293 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 14/247 (5%) Query: 27 PLMPALCRIRQGKKVINWETHTLTVDNNQIIL--FPCGYEFYIENYPEAGLYLAEMLYLP 84 L P++C + Q KK + + ++ E + + ++ Y+ L + Sbjct: 41 VLQPSICFVLQAKKRVATGQQAYVYSADSYLINSVTRPVEASLLDVTDSHPYVGFSLNID 100 Query: 85 IDLI-----ESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-----FSTKI 134 ++ E + + ++ + P PE+ +L ++ + I Sbjct: 101 QQMVGQLMMEMTRWQKEMYSAPQSGFTQSAPITPEISNIASRLLGLLNDEMDKEILAPSI 160 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 L VL G + + + +++ + I+ + + T ++A +S ST Sbjct: 161 CRELYYAVLKGPGGGLLRNCVSNHTGANRIAPVVHYIEQNFERNLTIEEIASVAGMSAST 220 Query: 195 LHRRLASEGV-SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 LH S + +RL+ A S + ++E+ GY PS+F+ F F Sbjct: 221 LHDHFKQVTTVSPMQYVKSLRLHKARSMLSVG-YQVAEVCYGVGYSSPSQFSREFKRYFG 279 Query: 254 ITPREIR 260 +TP E R Sbjct: 280 VTPSEAR 286 >UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF7_9BURK Length = 340 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 54/147 (36%) Query: 117 YCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG 176 + + QL+ + L L + L + +L R L G Sbjct: 192 FGFSQLRVVLGSTLVNSPSLAADDEALQRLLRDCDLQLQRLQAGGTLAQRVRMQLQQSEG 251 Query: 177 TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 T +A ++ T R L +EG SFQ +LD+VR A + T + IA Sbjct: 252 HMPTLQAMAAKENLTERTFMRHLQAEGTSFQQLLDEVRQERACWMLAHTDSTVEAIAYAL 311 Query: 237 GYKCPSRFTERFHNRFNITPREIRKAS 263 GY+ S F+ F TP++ R Sbjct: 312 GYEDASNFSRTFKRWCGQTPKDYRHQH 338 >UniRef50_B8HXD6 Transcriptional regulator, AraC family n=3 Tax=Cyanothece sp. PCC 7425 RepID=B8HXD6_CYAP4 Length = 338 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 147 GVNHVNHLLLSYSKQSL-----ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 + LL + +L + LL G VA +SV + R LA+ Sbjct: 216 AKRQEDKKLLQVTAPALDFPRSTQQVLRFLLR--GGHPKIELVAEIAGMSVRSFQRYLAA 273 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EG+++ +++ VR + A+ ++ I EIA E GY+ P+ FT F I+P+E R+ Sbjct: 274 EGLTYIRMVEQVRFDAAVDYLEDPDIKIIEIALELGYQDPANFTRAFKRWTGISPQEYRE 333 >UniRef50_B7RTY0 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RTY0_9GAMM Length = 344 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 +S+ ++L+EPG TA +VA+ L + TL R+L++EG ++Q+IL+++R A Sbjct: 243 EFVSQIREIILAEPGYFPTATEVAQSLECTTRTLRRKLSNEGSNYQTILNEIRSEIAKDY 302 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++ + PI +I+ G+ S F+ F +I+P++ R +R Sbjct: 303 LK-SNLPIEKISEMLGFSEASAFSNAFKTWESISPKDYRLNNR 344 >UniRef50_A1U2J4 Transcriptional regulator, AraC family n=3 Tax=Marinobacter RepID=A1U2J4_MARAV Length = 306 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 5/264 (1%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 L R L R H +HR L GK +N TV ++L P Sbjct: 46 LTRELYPLAFGHYRRAAGHHMHREHHRDNLLIYCTDGKAFLNVAGEPYTVTAGDLLLLPA 105 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 G P+ + ++ L E F + D R + L + P L+ + Sbjct: 106 GVSHRYTADPDNPWTI-HWVHYTGPLAEDFGQYMGFDDSTRIR---HLGRQPRLLVDFNG 161 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 L + GF + H + + L +N S ++Q+ + ++ + + T Sbjct: 162 LLSVRQTGFRARGLIHASNRLRQLLAAVPINADETSQARQAELDSLHSFMREHLEERLTL 221 Query: 182 NKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 N++A +S + R + G S +++ A + TT + ++I+R+ GY Sbjct: 222 NQLAELSGLSPAHFATRYREQTGTSPIQHFLHLKVERACELLDTTSQSFADISRQLGYDD 281 Query: 241 PSRFTERFHNRFNITPREIRKASR 264 F+ F +P + R +R Sbjct: 282 AYYFSRLFKKVMGKSPTDYRHTAR 305 >UniRef50_B4X435 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X435_9GAMM Length = 377 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 2/176 (1%) Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVN 149 SF+ V+ Q R+ + + + + ++ A + VN Sbjct: 203 SFEHQVQVSRQYRHALDVLNDKRADSWTAKAVVSGITFPASALDLKCLFADSITHQRLVN 262 Query: 150 HVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQS 208 L+ L+SR LL + + VA+ L +S STL R LA E FQ+ Sbjct: 263 QCEELMTRKQALLPLVSRIRQLL-GQGHAEPNQESVAQALNMSRSTLKRHLARENTHFQA 321 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +L ++R NA+ + T + IA + GY + F+ F +TP RK S+ Sbjct: 322 VLTNIRKENAVRLLLGTTHSLEHIAEQLGYSDQTNFSHAFRQWSGMTPGRFRKHSQ 377 >UniRef50_A3V8S6 Virulence regulating protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8S6_9RHOB Length = 337 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 76/231 (32%), Gaps = 11/231 (4%) Query: 41 VINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQ 100 ++ Q +L EF + P+ + +I + + Sbjct: 99 IMRMAKFKSLFGPMQFVLSRSASEFTVRVTPDVATAPLPGTFSSPQIIYLHAQANALARH 158 Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNH------- 153 S LP + + V + + A ++ + N Sbjct: 159 PIRPLSVCLPLPQDERERLADVFGQVPQHGDAMLTYARADARMIFISANTELWEATEADL 218 Query: 154 ---LLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 ++ L R +L T+ V L +S STL RRLA EG +FQ + Sbjct: 219 QAQAMIQSKGLPLSERVRATMLEAFSITEPNIAHVCGRLKLSRSTLLRRLADEGATFQML 278 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 LD+ R + A+ + + +IA GY+ P+ F F TP+ R Sbjct: 279 LDETRKDLAIRYLLKSDMNNQQIAHLVGYRDPNAFQRAFRKWTGTTPQAFR 329 >UniRef50_A1U2L9 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2L9_MARAV Length = 340 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 56/104 (53%) Query: 161 QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 + L++S+PG T +AR L IS TL + LAS G SF+ + +++R + A Sbjct: 234 DETAMQVRELIMSQPGRPCTTENIARRLDISPRTLRQHLASAGTSFRELRNEIRESFATL 293 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++ T P+ I+ + G+ + FT+ + + TP ++R+ +R Sbjct: 294 YLKDTNVPLESISEKLGFSDQAGFTKAYRSWTGKTPGDVRRQAR 337 >UniRef50_Q394T5 Transcriptional regulator, AraC family n=3 Tax=Burkholderia RepID=Q394T5_BURS3 Length = 343 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 53/119 (44%) Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 L + S++++ L T +A+ L+ SV TL+RR A EG Sbjct: 222 LNAAPGAWTFSVFHHGSIVAKTREHLERNIAQPLTIQALAQALHTSVRTLNRRFAEEGTH 281 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 FQ + D +R + A+ + + ++ +A + G+ + F F + +P + RK +R Sbjct: 282 FQQVKDGLRRDIAVDRLTNSNTSVAVLAFDLGFSDATGFCRAFKHWTGSSPTDYRKDTR 340 >UniRef50_Q1IAH1 Putative DNA-binding protein, AraC family n=1 Tax=Pseudomonas entomophila L48 RepID=Q1IAH1_PSEE4 Length = 334 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 10/160 (6%) Query: 107 FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR 166 FF L E LK V++G + +L L+ + Sbjct: 179 FFGQATNRLTLPIEVLKLPVAQGNER---------LFQALEPYLQREREQRSVSDELLPQ 229 Query: 167 CYNLL-LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTT 225 ++ L + ++V+ + +S TL RRL + + F ++++VR + AL + + Sbjct: 230 VTRMIALGMASGVPSLDEVSARMGLSRRTLQRRLKDQAIEFSVLVEEVRRDLALDYLNHS 289 Query: 226 VKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +++I+ GY FT F +P++ R+A RE Sbjct: 290 DYSMTQISLLLGYAESGSFTRAFRRWTGQSPQQFRQAGRE 329 >UniRef50_B8KM41 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KM41_9GAMM Length = 337 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 11/182 (6%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 L +DL + F + + + E L+ + G + Sbjct: 164 PLRVDLTCPATTHPEAYREALRAPIRFDAEIGCMHFDKETLRQPLPLGAPDIARAT---- 219 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLA 200 + + Q + S+ LL++ P K V+ L S STL R+L Sbjct: 220 ------DRITEQYMETLDPQKVASQVRQLLIALLPSGKADQELVSSQLNRSASTLQRQLK 273 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 SEG+S++ +L+ + + A + ++ +++IA G+ S F+ F +++P + + Sbjct: 274 SEGLSYRDVLESTQRSLAETYLRDKKYSLAQIAYLLGFSEQSNFSRAFKRWTSMSPGQYQ 333 Query: 261 KA 262 + Sbjct: 334 DS 335 >UniRef50_A6FDG0 Transcriptional regulator, AraC family n=1 Tax=Moritella sp. PE36 RepID=A6FDG0_9GAMM Length = 339 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLAS 201 L+SL + L S +++S+ + ++S T + VA L S +L R+L Sbjct: 215 LISLSDKAADDYLASLDCNNVVSQVRSEVVSLMATGVPNIDFVAEKLNFSQRSLQRKLND 274 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G S++ +++++R A + + EI+ G+ + F+ F +TP R Sbjct: 275 SGTSYKDLVENIRQTTAEQHLNQNRLSLGEISYLLGFSNVANFSRAFKRWKGVTPGVYR 333 >UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B0KIB9_PSEPG Length = 359 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 10/184 (5%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 + E++ + V D F Q L++ L + + + Sbjct: 180 VLFEHPQPEAWHEHCKVFDAP----VLFGQQRNALVFRRSVLDRPMPGRDPRLLAIVIES 235 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 LL +N + + ++ LL + +VA L + T+ RRL Sbjct: 236 MHLLRGQAGTLNRPGIV---DDVKTQVRALLG---DGYPSLEQVAEQLRLPSWTVQRRLQ 289 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +G+SF +++D VR A +Q + PISE+A GY S F+ F F+++P++ R Sbjct: 290 EQGLSFSTLVDTVRQELATYYLQQSALPISELALLLGYSEISAFSRAFRRWFDVSPKQWR 349 Query: 261 KASR 264 +A + Sbjct: 350 QAHK 353 >UniRef50_A9BZN3 Transcriptional regulator, AraC family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BZN3_DELAS Length = 338 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 1/123 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLAS 201 LL+L V L + + +R + + P + VA L ++ TL RRL + Sbjct: 215 LLALHEKLVETELDHLGQAGVGARVRHEIARLLPQGEPRREDVASLLGLTDRTLQRRLQA 274 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 E S+Q +LD+ R AL + + ++E+A G+ S F + P + R+ Sbjct: 275 EDTSYQQLLDETRRELALQYLGEPRRSLAEVADLLGFVDQSNLFRACRRWFGMPPGQYRQ 334 Query: 262 ASR 264 R Sbjct: 335 QLR 337 >UniRef50_A4A781 AraC-family transcriptional regulator n=1 Tax=Congregibacter litoralis KT71 RepID=A4A781_9GAMM Length = 350 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 2/119 (1%) Query: 146 LGVNHVNHLLLS--YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 L N LL S S+ R L+L P +AR L++S TL RRL EG Sbjct: 228 LTQQLCNSLLEQTPRSSSSMADRVRTLMLLRPIDSIAEPDIARALFVSKRTLARRLEKEG 287 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 S++++ D A +Q + + +A GY + F + F +TPR R+ Sbjct: 288 TSYRALKDQFLAELARRYLQEPRQTVEGVAASLGYHDAAAFRKAFKRWTGMTPRLYRQR 346 >UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WD12_ACTMD Length = 350 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 42/99 (42%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 + L ++VAR L +S TL RRLA G S++ +LD+VR A Sbjct: 240 GIAHEVRERLAGPGALDCGMDRVARELSVSTRTLRRRLAGAGTSYRELLDEVREALAERL 299 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 ++ + E AR GY S F F +TP R Sbjct: 300 LRGGALSVEEAARRLGYAEASSFIHAFKRWKGVTPATWR 338 >UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA81_9PORP Length = 287 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 14/238 (5%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESF 91 + +++G +++ E +++ N++++ E E E L ++ F Sbjct: 50 INYVKKGNCILHLENESISFSENEMMVICSNVEHTFEAGSEDT--TLMQLEFLPEVFSRF 107 Query: 92 --------QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM--G 141 + L VT + N ++ +++ +++ S Q + M Sbjct: 108 NPDGHGQMKDLAPVTIFSEENRLIKIVNNVRIMRAVQRIVNEMNQK-SKYYQYLVVMYYA 166 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 LL L +++ L + + + + + T + VA + L + + Sbjct: 167 ELLILIYRYLDEAYLPICTNDSLKKAISYIRLNYQSDITISDVASQTGVGERYLRKLFSQ 226 Query: 202 E-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 +S L+ +R+N A+ ++ T + E+ G++ P F+ F + I+PRE Sbjct: 227 YLNLSPLDYLNQIRINKAIELLRNTEMSVKEVCFACGFQSPQYFSRIFKQQMGISPRE 284 >UniRef50_B4X114 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=B4X114_9GAMM Length = 358 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 72/183 (39%), Gaps = 12/183 (6%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 ++L + + + + +R + + PE + L + + + + Sbjct: 184 IWLQGEPPAAGRAMDDGAVPVRYRQARAGIWAPE---AVQWLDSPLPTANPEALSQ---- 236 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 +L L++ +L+ + LL+ ++A L+++ TL RRL Sbjct: 237 ----ALAQCERESALMAPG-DTLLRQVRELLVLGAHGYPAPEQLAERLHLTPRTLRRRLQ 291 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G FQS+L++ R ++ + ++ I I+ G+ P+ FT F +TP + R Sbjct: 292 ERGQGFQSLLEEARHRDSRHLLASSDMEIQRISELLGFADPANFTRAFKGWMGMTPSQWR 351 Query: 261 KAS 263 Sbjct: 352 HQQ 354 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 2/125 (1%) Query: 139 AMGVLLSLGVNHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 A V +S+ L+ + + + + L + + ++ L++S TL R Sbjct: 254 ANAVTVSMCEQMCTQLMQRRIAHAGMTALVQHYLNTPDNGMPDLSSISELLHVSPRTLKR 313 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL EG +F+ +L DVR NA++ ++ ++EIA G+ S F++ F I+P Sbjct: 314 RLKEEGTTFRKLLADVRSRNAINLLKDG-HNLTEIAERLGFSDLSSFSQAFKRWHGISPS 372 Query: 258 EIRKA 262 + + Sbjct: 373 QFSQQ 377 >UniRef50_Q2BN29 Transcriptional regulator, AraC family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN29_9GAMM Length = 348 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 11/185 (5%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 + L + T D N F Q +L++ L ++ G ++ Sbjct: 174 PIKATLTRARPDNPTCWDDFFNCPVEFSAQRNQLVFDRTTLHETLPTGNTS--------- 224 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYN-LLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 L V L + + + L+ P T + V++ L I TL +L+ Sbjct: 225 -LAEQNDKLVEAYLHKMQLNDICGQVRSCLIELMPLGITTMDGVSQALSIPPRTLQYKLS 283 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +G + Q + D++R A +Q + +P ++IA G+ P+ F F TP R Sbjct: 284 QQGTTLQELRDNIREELARQYLQHSRQPFTQIAYSLGFSDPAHFNRAFKRWTGETPTAYR 343 Query: 261 KASRE 265 + + E Sbjct: 344 RRTSE 348 >UniRef50_Q16DG7 Transcriptional regulator, AraC family, putative n=9 Tax=Rhodobacteraceae RepID=Q16DG7_ROSDO Length = 381 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 2/155 (1%) Query: 109 LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCY 168 P + +S +++ + V L QSL R Sbjct: 225 FPAPVRFDQSATAITFDLSLQGPVQLRSTADLDVFLQNAPRDWIFTRSEVHTQSL--RVR 282 Query: 169 NLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKP 228 + L AR L+++ TL R+L ++G SFQ I D +R + A+ +QT Sbjct: 283 SYLSQAGWDTANLTGAARALHLTPRTLIRKLEADGTSFQMIKDALRRDIAIRHLQTGQHS 342 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 I IA E G+ + F + F TP R+ + Sbjct: 343 IEAIAHEVGFSSAANFHKAFQRWTGNTPSSYRRRN 377 >UniRef50_B2HXY7 AraC-type DNA-binding domain-containing protein n=10 Tax=Acinetobacter RepID=B2HXY7_ACIBC Length = 344 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 1/128 (0%) Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYN-LLLSEPGTKWTANKVARYLYISVSTLH 196 + +L + ++ L L ++ IS+ LL++ G +VA+ + +S +L Sbjct: 209 MLAPLLKAQCKKDIDKLKLRSGWKAEISQVIKKLLINSQGEILKVKQVAQMMNMSERSLQ 268 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R LA E SF +++D R A +Q + I +A GY FT F +TP Sbjct: 269 RYLAIENTSFSALVDLTRKQYAQDLLQNSSMSIEAVALSLGYADTPHFTRAFKRWMGVTP 328 Query: 257 REIRKASR 264 + + + Sbjct: 329 KYYQTQLK 336 >UniRef50_D0LMC0 Transcriptional regulator, AraC family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMC0_HALO1 Length = 341 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE--PGTKWTANKVARYLYISVSTLHRRLA 200 L + H LL ++ R + + E P VA+ + +S TL RRL Sbjct: 212 LRQVLEQHAADLLARTRSETNELRAVRMAIHERLPDGAPELGTVAQAVGMSTRTLQRRLR 271 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G SF +++++ R + A + + +SEIA GY S F F TP + R Sbjct: 272 DAGTSFAAVVEEERSSAARAYLGDQALAVSEIAYLLGYSEASAFVRAFKRWTGKTPNQFR 331 Query: 261 KA 262 A Sbjct: 332 AA 333 >UniRef50_B5JSW3 Transcriptional Regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSW3_9GAMM Length = 333 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 58/168 (34%), Gaps = 7/168 (4%) Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL------SLGVNHVNHL 154 + N+ F P LK V G A + L ++ + V Sbjct: 163 VANRIEFRHPARGSQEAYQTYLKAPVYFGCKANRLYFDAQHLGLPTHSGNAVLFDSVVEQ 222 Query: 155 LLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 L S+ S+ L + A + +S TL RRL+ +G S+ + V Sbjct: 223 LAQQVDDSVSSQLRQYLAAALVDGVPDIKAAAAHFNLSERTLQRRLSQDGTSYSEQVSRV 282 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 R + A ++ I EIA G+ S F + F +P R+ Sbjct: 283 RQDLACQMLRYQDCSIGEIADRLGFAEASAFNQAFRRWVGKSPSAYRR 330 >UniRef50_C7QI96 Transcriptional regulator, AraC family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QI96_CATAD Length = 315 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 23/280 (8%) Query: 8 NLKIEEIRMHKHHEIHRVKPLMP-ALCRIRQGKKVINWET--HTLTVDNNQIILFPCGYE 64 L E I + + V+ +L + +G+ + E H + +L P G Sbjct: 32 RLTGERIVAYTPSPLFSVEFADRGSLHIVEEGEVTLRIEGSPHVEHLCAGDFVLLPRGDA 91 Query: 65 FYI------------ENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQN 112 I + +L + +R L Sbjct: 92 HSISDAGLGGSPAGGDADRRPARWLCGTFTIGDPQASHLLGSLPAVIILRGSGGPDLEAL 151 Query: 113 PELIYCWEQL-KTSVSRGFSTKIQEHLAMGVL------LSLGVNHVNHLLLSYSKQSLIS 165 L + S + + + ++ V L+ + I Sbjct: 152 EGLEVARRMIVLEMQSPSQGSAVMVARILDLIFIQIMRTWAAGADVEPNWLAGAFDPQIG 211 Query: 166 RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQT 224 + + +PG +WT ++AR +S S+ R G + L VRL+ A + ++ Sbjct: 212 LALSAIHRDPGREWTVEELARACNLSRSSFAARFVERVGKPPATYLAHVRLDAATTLLRD 271 Query: 225 TVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 T P++++A GY + F+ F NR+ P R+ R Sbjct: 272 TFLPVTQVAETVGYASEAAFSRAFKNRYGTPPARWRRDIR 311 >UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TY01_MARAV Length = 345 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 159 SKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 + S+ R LL S G VA+ + +S TL R+L++EG F + + VR Sbjct: 237 ASASVSDRVLRLLESARDGRLPGLEDVAQQMGVSPRTLRRQLSAEGGGFHGLQESVRHQR 296 Query: 218 ALSAI-QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 A + + + I EIA GY PS F F ++P R+ ++ Sbjct: 297 ARELLLRHSAMSIDEIAEHLGYSDPSNFGRAFRKWEGMSPSAWRRDNQ 344 >UniRef50_A9AT03 Transcriptional regulator, AraC family n=13 Tax=Burkholderia cepacia complex RepID=A9AT03_BURM1 Length = 425 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 5/177 (2%) Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVL 143 P L+ + + +D +R+ + E + + + + + ++ + G Sbjct: 250 PDQLLLARRTPRNASDYVRHFGCKAVFNAGENSLVFTAVNGTETPRLANEVSFNALHG-- 307 Query: 144 LSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 + + R L+ + + +A L+++ TL RRL +G Sbjct: 308 ---QCEALERQWAASIGTRFADRAKALMTRDLSRFKSMTSLADALHMTERTLRRRLEKDG 364 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +SFQ++LDDVR + A + ++ IA GY P F + TPRE R Sbjct: 365 ISFQALLDDVRRDEAARLLDDPALTVAAIAEHLGYSEPRAFRHAYRRWTGRTPREGR 421 >UniRef50_Q21W07 Transcriptional regulator, AraC family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21W07_RHOFD Length = 346 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 139 AMGVLLSLGVNHVNHLLLS--YSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTL 195 A LL L H LL + ++++ + G VA L++S TL Sbjct: 215 ANKALLPLLQQHAEALLQARYPQDVGIVAQVRQSISGRLGSGSVKLAGVASDLHLSTRTL 274 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRLA GV++Q++LD R A + + P++E+A G++ F F Sbjct: 275 QRRLADVGVAYQTLLDSSRHELARHYLSNSAMPVAEVAYLLGFQDTPAFHHAFKGWQGQG 334 Query: 256 PREIR 260 P + R Sbjct: 335 PGQYR 339 >UniRef50_B5JV53 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV53_9GAMM Length = 342 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 2/206 (0%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 P IEN + A + +L R F + Sbjct: 136 PLVRRHVIENVLASWTIFARWITGKPHESGLEIRLEHAPPTRRELLPEFDRVFGCPVLFN 195 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLIS-RCYNLLLSEP-GT 177 ++ + S + A + S N L S Q+ ++ + + L + G Sbjct: 196 QRETGVLLSAESMDLPLIQADQTVFSSLQETANQRLAELSGQTPVAVQVKSALRTLMKGG 255 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 + VA + ++ T+ RRL E VS+Q IL+++R A+ ++ T + +I G Sbjct: 256 IPRKDTVAEKIGMTSRTMQRRLKEEAVSYQEILNELRHEMAIDLLENTDLSLEDIGHRLG 315 Query: 238 YKCPSRFTERFHNRFNITPREIRKAS 263 ++ P F F TP RK++ Sbjct: 316 FQEPRSFHRSFKLWTGETPGNFRKST 341 >UniRef50_C1DS97 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=C1DS97_AZOVD Length = 338 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 164 ISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAI 222 R + L T A L+++ TL RRL++EG SFQ I D +R + A+ + Sbjct: 235 TRRVRDHLERSGDLAGATIQSTAAALHLTERTLRRRLSAEGSSFQGIKDGMRRDMAIHYL 294 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 PIS++AR+ G+ PS FT F P+ R A+R+ Sbjct: 295 TQPSMPISQVARQLGFSEPSAFTRAFKQWTGELPKTYRDAARK 337 >UniRef50_Q1YQ09 Probable transcriptional regulator n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YQ09_9GAMM Length = 346 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 13/167 (7%) Query: 110 PQNPELIYCWEQLK----TSVSRGFSTKIQEHLAMGVL-------LSLGVNHVNHLLLSY 158 P++P L+ ++++ +I+E L VL L + + H LL Sbjct: 174 PEDPALLADYQEIFNCEVLFDQPSSGVRIREALLDEVLPQANGELLEMLLAHATKLLAGL 233 Query: 159 SK-QSLISRCYNLLLSEPGTKW-TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 + Q + N+L + ++ +A L IS TL R+L+ EG ++ +L+++R Sbjct: 234 DQSQRTTDQVKNILRLMINQQPPSSEMIAEKLGISSRTLQRKLSEEGTHYKDVLNELRYE 293 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 A+ ++ T + IA E GY F F T R A Sbjct: 294 LAVYFLKNTELTLDNIAYELGYAEARSFYRSFKQWTGETAGCFRAAH 340 >UniRef50_B7KQC6 Transcriptional regulator, AraC family n=2 Tax=Methylobacterium extorquens group RepID=B7KQC6_METC4 Length = 366 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 13/195 (6%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG--FSTKIQE 136 + + + T + P++ L +++ Sbjct: 156 HQVEFWMTGFIRVAQQLTSLRLSPIHLTLCHPRHAGAREIEAFLGCAIAFDALVDEVRFP 215 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCY-----------NLLLSEPGTKWTANKVA 185 A +L+ +++ LLL YS+++L R ++ P + +++A Sbjct: 216 SAAGNAVLTGADPYLHDLLLGYSEEALAHRVRLAESLRTRVENAVMPLLPHGRPRISEIA 275 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 R L S TL RRL EG+SF+S+L+++R + AL ++ T IS IA G++ + FT Sbjct: 276 RALGTSQRTLSRRLTEEGLSFESVLEEMRRDLALRYLRDTRLSISRIAWLLGFREATAFT 335 Query: 246 ERFHNRFNITPREIR 260 F +P E R Sbjct: 336 HAFRRWTGRSPTEAR 350 >UniRef50_B8KPR3 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPR3_9GAMM Length = 363 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 146 LGVNHVNHLLLS--YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 L N LL S S+ R L+L P ++AR L++S TL RRL EG Sbjct: 225 LTQQLCNTLLEQTPRSSSSMADRVRTLMLLRPVESIGEPEIARALFVSKRTLARRLDLEG 284 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S++ I D A + + + +A GY + F + F +TPR R AS Sbjct: 285 TSYRQIRDQFLAELARRYLLEPRQTVETVAASLGYHDAAAFRKAFKRWTGMTPRNYRDAS 344 >UniRef50_C6AKL4 Histidine kinase n=2 Tax=Aggregatibacter RepID=C6AKL4_AGGAN Length = 293 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 90/252 (35%), Gaps = 24/252 (9%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYI---------ENYPEAGLYLA-EML 81 + QG I + T + ++ P G E I G++ Sbjct: 41 FHIVSQGTCQIRLKDQTYHLKPGDVVFLPYGEEHIIYHGADTETQITKTTQGVFTLHRNS 100 Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQ------NPELIYCWEQLKTSVSRGFSTKIQ 135 E F + + ++ F LP N ++ + L+ ++ Sbjct: 101 SNESGDFEMFCGYFRYLNVAQSLL-FNLPHWHLAGNNDSIMALLKLLRKETEDNLGNEVV 159 Query: 136 EHLAMGVLLS------LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLY 189 +L + L + VN +L + + N +++ P W+ +A Sbjct: 160 VDALCNILFTYLIRDYLQHHQVNQGILGALQDKRLKNAVNAIIANPKESWSMEVLAESCA 219 Query: 190 ISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S + R G+ L +R+N A ++ T KPIS IA E GY+ + FT+ F Sbjct: 220 MSRANFIRAFKQKTGILPGKFLTIMRMNMAGMLLKNTQKPISVIASEVGYQSDTHFTKVF 279 Query: 249 HNRFNITPREIR 260 + + I+P + R Sbjct: 280 KSYYGISPGKYR 291 >UniRef50_A4BJM9 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJM9_9GAMM Length = 349 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 16/179 (8%) Query: 102 RNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHL--LLSYS 159 + F E++ +++ G + V + HL L+S+ Sbjct: 170 PTRIEFTHTVAAEVLADYDRCFQCEITGNRPNLCVVFPAEVFSRPIIGGDEHLHQLISHQ 229 Query: 160 KQSLISRC--------------YNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 +SL+S L+ + TA+ +A L++S TLHRRL EGV Sbjct: 230 AESLLSDVPHADAEEKISLRARKALIRALQEGCPTADVIAEQLHLSKRTLHRRLHDEGVV 289 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 F+ +L + R+ A ++ + E+A GY S F F F ++PR+ + + Sbjct: 290 FRDLLRETRMTLAEQYLKDGKMTLPEVALMLGYSEQSAFNRAFRQWFAVSPRQYHRLHQ 348 >UniRef50_A9GIA9 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GIA9_SORC5 Length = 336 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 17/196 (8%) Query: 74 GLYLAEMLYLPIDLIESF-----QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 ++A L IE+ + L ++ ++ + F L+Y L V Sbjct: 148 ARFIALYLGGSARPIEALFRHPRRHLPSLYEEAIGAPARFEAGAMGLVYEARVLDAPVV- 206 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLL-SYSKQSLISRCYNLLLSEPGT-KWTANKVAR 186 G ++++L V H LL S +L +R + +AR Sbjct: 207 GADPSVRDYL---------VRHAEQLLAARASAATLDARVRARIEERLDRGDVDQEGIAR 257 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 L +S +L R L G SF + LD+ R AL ++ + EIA GY P F Sbjct: 258 SLGMSTRSLQRALKDIGTSFTAQLDEARREKALDLVRRPDLALQEIAFLLGYGEPRHFYR 317 Query: 247 RFHNRFNITPREIRKA 262 F TP E R+A Sbjct: 318 SFRRWTGTTPGEYRRA 333 >UniRef50_UPI00016A75A2 transcriptional regulator, AraC family protein n=3 Tax=pseudomallei group RepID=UPI00016A75A2 Length = 336 Score = 124 bits (311), Expect = 3e-27, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 74/185 (40%), Gaps = 5/185 (2%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A + +L DL E + +T + QL+ S S + Sbjct: 152 ATVKFLFPDLFEQIELGFTWPQPDYFERYRDRLPKVNFRASDNQLRLPSS---SLARKSL 208 Query: 138 LAMGVLLSLGVNHVNH--LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 LA S + ++ LL+ L+ R L+ + ++A L++S TL Sbjct: 209 LANAAAHSQAIRQLDREMALLNLDASDLVDRVRAGLMLSEDGYPSLARLASSLFLSERTL 268 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRL G S++ +L+ R +A + ++ T +++++ + GY+ P FT F I Sbjct: 269 KRRLREHGTSYREMLEKARYRDACALLRETDLSLADVSAKLGYQNPPTFTRAFRRWSGIA 328 Query: 256 PREIR 260 P R Sbjct: 329 PSRYR 333 >UniRef50_Q88C44 Transcriptional regulator, AraC family n=16 Tax=cellular organisms RepID=Q88C44_PSEPK Length = 356 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 43/106 (40%) Query: 155 LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 L +Q+ + R LL + +AR + S TL R L + G S+Q +LD++R Sbjct: 250 LEFTGRQAWLGRIRQLLAQQLDAAPGLEGLARQMNCSSRTLRRHLQALGSSYQQLLDELR 309 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 A + PI IA G+ + F F + P R Sbjct: 310 FERAKQLLADEQMPIYRIAETLGFSETASFRHAFQRWSGVAPSHFR 355 >UniRef50_A5VDX1 Transcriptional regulator, AraC family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VDX1_SPHWW Length = 331 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 47/105 (44%) Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 + L+ L+ + + + VA L++S TL RRLA GVSF I+D+ R + AL Sbjct: 220 EDRLLESVRRLVNTATDDAPSLSDVAARLHLSARTLRRRLADRGVSFMRIVDEERRSLAL 279 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + + IA GY + F F +PR +S+ Sbjct: 280 QYVMGGEMTVESIAERLGYSESANFRHAFRRWTGSSPRNYLASSQ 324 >UniRef50_Q0VP86 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP86_ALCBS Length = 339 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 162 SLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALS 220 L ++ ++ +E G + ++ L ++ TL RRL S+Q I D +R + ++ Sbjct: 232 GLPAQIRAIISNEYGNSFPDFTEICGKLNMTPQTLRRRLKEANTSYQEIKDAIRKDASVY 291 Query: 221 AIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + I EIA G+ S F F TP R+ Sbjct: 292 YLSKPDLSIDEIALLMGFSEASSFHRAFKKWTGKTPSNFRREH 334 >UniRef50_B6QYV1 Transcriptional regulator, AraC family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QYV1_9RHOB Length = 341 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 1/105 (0%) Query: 157 SYSKQSLISRCYN-LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 S + + R N LL S P + T +++ L S TL R+L EG SFQ IL + R Sbjct: 234 SGASDEMSRRVKNALLESLPAGQNTIEVISQRLNASKRTLQRKLKEEGKSFQDILSETRS 293 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + + + I EI+ GYK F F + TP E+R Sbjct: 294 ELSQHYLVRSDLSIPEISYLLGYKDTGSFFRAFQSWTGKTPMEVR 338 >UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6F6Z7_9GAMM Length = 354 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 36/178 (20%), Positives = 68/178 (38%), Gaps = 17/178 (9%) Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 +LI+ +Q+++ F + L+ + L + + + +L Sbjct: 181 PELIDHYQQIFACP-------VLFAQSSNSLVLSRDNLNIPLRQPDHS---------LLQ 224 Query: 145 SLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANK-VARYLYISVSTLHRRLASEG 203 +L ++ + S + ++++ T VA L +S TL R+L E Sbjct: 225 TLELHAAGQVSALEGTHSFSVQVHDIIRILLSKGITRKDMVAAQLNMSERTLQRKLQQEQ 284 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 S+Q +LD+ RL+ A + + I EIA G+ F F TP R+ Sbjct: 285 TSYQKLLDEARLSLAQQYLTKSKAGIDEIAIMLGFSETRSFFRSFKLWTGQTPNVYRE 342 >UniRef50_A4BF80 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF80_9GAMM Length = 359 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 L L + L ++ P T + VA+ L +S TL R+LA Sbjct: 224 LSELHDRIIESYLAMLKDDVSTRVVSAIIRQLPRGNTTQDTVAKALNLSSRTLQRKLADR 283 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G+SF+ +L R AL ++ P+ E+ + G+ P+ F+ F P + R+ Sbjct: 284 GLSFRELLVSTRKELALQYLRQNHIPVLEVGYQLGFSEPANFSRAFKQWTGEPPGQYRER 343 Query: 263 SRE 265 ++ Sbjct: 344 WQQ 346 >UniRef50_Q0VTC8 Transcriptional regulator, AraC family n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VTC8_ALCBS Length = 324 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%) Query: 130 FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLY 189 + + + +L +LL+ +L+ + LL+ + T ++A +L+ Sbjct: 191 LDSPLPTANPEALSQALIQCERESVLLAP-GDTLLRQVRELLVLDAEGYPTPEQLAEHLH 249 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 ++ TL RRL G+ FQS+L++ R ++ + + I I++ G+ P+ FT F Sbjct: 250 LTARTLRRRLQERGLGFQSLLEEARRRDSCHLLAASDMEIQRISQLLGFADPANFTRAFK 309 Query: 250 NRFNITPREIRKAS 263 +TP + R+ Sbjct: 310 VSMGMTPSQWRERH 323 >UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8R5_9RHOB Length = 338 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 1/140 (0%) Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWT 180 + + L + VL + G ++ L L ++ + + G + Sbjct: 197 VFKPEDLDLPLASGDRLLLRVLRAFGDQMLHGRGLGRKSSDLTAQVEEAVSARLSGGTAS 256 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 VA L +S TL R+LA G S+ ++L+++R A+ ++ T P+SEIA GY Sbjct: 257 LANVAADLGMSPRTLSRKLARAGTSYFTVLEELRKALAIRYLRETRLPLSEIAFLLGYSG 316 Query: 241 PSRFTERFHNRFNITPREIR 260 + F+E F +P + R Sbjct: 317 LNSFSEAFRRWTGQSPGQFR 336 >UniRef50_Q390J5 Transcriptional regulator, AraC family n=3 Tax=Burkholderia RepID=Q390J5_BURS3 Length = 339 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%) Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 + ++ + + ++A L +S TL RRLA +GVS+Q+++D +R A + Sbjct: 238 EFLESIERIMRRDLRHAPSLAEIAAQLCMSERTLRRRLADQGVSYQTVIDTIRRKRAFTL 297 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 + I ++A E G+ F F PRE Sbjct: 298 LSNPRLSIEDVAHEVGFSDAHNFRRAFKRWTGHGPRE 334 >UniRef50_Q46UH7 Helix-turn-helix, Fis-type n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46UH7_RALEJ Length = 352 Score = 123 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 68/185 (36%), Gaps = 16/185 (8%) Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 A + L + S V + F ++ + + Q Sbjct: 159 RARRICLSHEAPRSLASHLRVF----GRAVDFGCDFNGIVCELKDMDAMPRAARPELAQ- 213 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTL 195 A L SL S+ ++LS P + +VA L + T+ Sbjct: 214 -YAHAYLDSLSARATL---------SMTENVRRMVLSLLPSGNCSVERVASQLGVDRRTV 263 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 HR+L EG SF SILD+VR AL ++ +P+S +A G+ S F+ F + F + Sbjct: 264 HRKLLQEGASFSSILDEVRATLALQYLRHLERPVSYVAVLLGFSMQSAFSRWFRDHFGCS 323 Query: 256 PREIR 260 P R Sbjct: 324 PSAWR 328 >UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGN7_9CLOT Length = 326 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 51/245 (20%), Positives = 86/245 (35%), Gaps = 16/245 (6%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG------------LYLAE 79 L + +G V ++ +T+T+ +++L E + Y + Sbjct: 79 LMYVYRGSCVNHFNENTITIQEGEMLLLNPNTAHCPETLTDQDCVFNIMFRQNFFQYSLD 138 Query: 80 MLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQL-KTSVSRGFSTKIQEHL 138 +L L SF I FFLP + + + I + L Sbjct: 139 LLLKDNTLFSSFFMECMFQSSIARDYLFFLPGKASADTIERLIVECFEKQSCYETITQSL 198 Query: 139 AMGVLLSLGVNHVNHL-LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 + + L N N + + LI + + P + T KV+ S + L R Sbjct: 199 LVELFAYLARNSDNSFSYPKNNHERLILKIITYIQESPA-EITLQKVSEQFQYSTAYLSR 257 Query: 198 RLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 + G +F I+ D RL A ++++ I +IA GY S F + F TP Sbjct: 258 MIKQYTGKNFSEIVRDCRLTKAKYYLESSSLSILDIALILGYNDVSHFYKVFKQEIGCTP 317 Query: 257 REIRK 261 E RK Sbjct: 318 TEYRK 322 >UniRef50_A0Z3K7 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3K7_9GAMM Length = 340 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 15/197 (7%) Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 I + + L E Y D F P+ + + + LK Sbjct: 149 VTILRIASQNEFRPRTVSLARPFPEDEASHYE--DFFGCDVLFGAPET-SISFDSQLLKL 205 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYN-LLLSEPGTKWTANK 183 + L + K +R N L+ P + Sbjct: 206 PLVGADPQ----------LAQSYDQLTEQYIAKLEKADFPARVRNELVRLLPTGVSGKDA 255 Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA L +S TL+ RL G +F+ +LD+ R A + P++EIA G+ + Sbjct: 256 VASVLCVSTRTLYNRLEEAGTTFREVLDETRKLLAEDYLTKG-LPVNEIAYLTGFSDTAN 314 Query: 244 FTERFHNRFNITPREIR 260 F+ F ++P R Sbjct: 315 FSRAFKKWTGLSPMTYR 331 >UniRef50_B4WXJ1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WXJ1_9GAMM Length = 331 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 2/120 (1%) Query: 143 LLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 LL + + + + ++ + LL K + + VA L++S TL R+L Sbjct: 212 LLWIAIEQCEARQEALRNRGTVSDQVLALLHQH-HGKASLDTVADQLHMSPRTLIRKLKQ 270 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 E FQ + D A + ++ +A + GY + F F F TP R+ Sbjct: 271 ENTRFQQLRDQTLSRRAAQLLGLPHYTVAAVAEDLGYTDVASFRRAFQRWFGTTPGSFRR 330 >UniRef50_B4WYI1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WYI1_9GAMM Length = 340 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 17/232 (7%) Query: 47 HTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS 106 LT +I L P +E YP + + D++ +F+ + + Q+ Sbjct: 102 QALTYLYGEIALVPGEQTTALELYPIPLPPEVSRILIDRDMVGTFKLINDIQTQLNLDLK 161 Query: 107 FF-----LPQNPELIYCWEQLKTSVSRGFS--TKIQEHLAMGVLLS--------LGVNHV 151 P+ + + + + MG+ + + Sbjct: 162 PVEVWMPYPRPAHAEAFEDYFGCPIRYDQPYCKAVIRNQDMGIRMPGYNKMAQDMYREQC 221 Query: 152 NHLLLSYSKQS--LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 + +L + L R L + TA +VA+ I T R+L+ E FQ I Sbjct: 222 DAMLARREAPTADLGGRVAAYLNLFVRSFPTAEQVAQAFGIPERTFRRQLSKENRPFQGI 281 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +D VR + A ++ + + ++EIA GY + F F +TP R+ Sbjct: 282 MDQVRKDKARRYLEDSERSVAEIAELLGYSESAAFVRAFERWTGVTPARHRR 333 >UniRef50_A9GMV5 Transcriptional regulator, AraC family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GMV5_SORC5 Length = 346 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 80/225 (35%), Gaps = 25/225 (11%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 P F P A YL + F++ R T L + P Sbjct: 124 PDHVTFRFALAPGHTAPSAVWDYLAATTVLRFRR---AATPPREPTVVRLVRPPPADGAL 180 Query: 120 EQ--LKTSVSRGFSTKIQEH-------------------LAMGVLLSLGVNHVNHLLLSY 158 + + + G E+ LA + +LG+ H +L Sbjct: 181 ARSVFRAPIRYGEPRAEIEYPRALLDARMSTTDPMLYTLLAQQLERALGLPASEHRVLPR 240 Query: 159 SKQSLISRCYNLLL-SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 +++ +++R L + P + T + VAR + S +L RRL+ G SFQ+I+DD R Sbjct: 241 AEEDVLARVRRELRTAIPQGEATLDHVARAVGQSARSLQRRLSERGTSFQAIVDDARRAM 300 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 A + ++E A G+ + FT F + P + Sbjct: 301 AEELLAAHRATVTEAAFAVGFTDVAAFTRAFKRWNGVPPGAWSRR 345 >UniRef50_A4XSK5 Transcriptional regulator, AraC family n=10 Tax=Pseudomonas RepID=A4XSK5_PSEMY Length = 344 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 8/209 (3%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 P +EN + L A + + + + + + Sbjct: 134 PQVRRHMVENVLASWLLYARWIADSEHSPR--EAWFEHAQPAGTELEEYQALFGCPVLFE 191 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR----CYNLLLSEP 175 + + + A LL H L+ + + R LLL + Sbjct: 192 QPCNALLVPLDYLGVPLRQADANLLRTLEEHALALMAGLDEDEPLPRRVKNALRLLLKD- 250 Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 +VA ++V TL R L G S+Q ILD++R A + + I +IA Sbjct: 251 -GLPRKERVAEKFDMTVRTLQRHLQQAGTSYQQILDELRQELAEHYLLRSDLAIQDIACY 309 Query: 236 NGYKCPSRFTERFHNRFNITPREIRKASR 264 G+ F F TP E R++ R Sbjct: 310 LGFTEARSFHRSFKGWTGQTPGEFRESRR 338 >UniRef50_C6LF57 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF57_9FIRM Length = 309 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 88/270 (32%), Gaps = 27/270 (10%) Query: 22 IHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEML 81 + L I G+ + V N + P G E ++++ Sbjct: 40 YRESRIPYCMLRYICSGRAKFIVDGKEYIVKENDVFYIPQGSTLACSAL-EKIVFISVRF 98 Query: 82 YLPIDLI------------------------ESFQKLYTVTDQIRNKTSFFLPQNPELIY 117 I + E F+K+Y LI Sbjct: 99 VDSIQIPGEDMLLKLWNIRQQYYCGAGTEMREWFEKMYQSAISRAMYKRLETCGYLNLIC 158 Query: 118 CWEQLKTSVSRGFSTKIQ-EHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG 176 ++ S +Q E + M ++++ L + + + P Sbjct: 159 AGLARRSGASEEPEETVQSERITMESMINMKYIRKRVLASQKDTDPRVQMVVDYITLHPE 218 Query: 177 TKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 T K+ +S STL R +E G S D ++ A + TT++ ISEI Sbjct: 219 ENLTREKLCTMTGVSESTLRRLFKAEMGKSIYEFTKDTKMMYAAHLLMTTMESISEIGYR 278 Query: 236 NGYKCPSRFTERFHNRFNITPREIRKASRE 265 GY+ PS FT RF F ++P+ RK SRE Sbjct: 279 LGYESPSYFTRRFRENFGVSPQTYRKNSRE 308 >UniRef50_Q24N17 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N17_DESHY Length = 250 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 89/238 (37%), Gaps = 12/238 (5%) Query: 30 PALCRIRQGKKVINW--ETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDL 87 P+ + +++ T + N+I+ Y+A +++ + Sbjct: 5 PSYLFVLTFNDQVSFKINTREIIAKPNKIMALSPNIPHNEIFTDRFPRYIA--IFIDKEF 62 Query: 88 IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLG 147 E Y + I + FF P P +Y ++ V+ Q + L Sbjct: 63 FEDQLNQYAIVPNIFLQGDFF-PVPPGFLYAVKEFLLEVNNDIPGA-QSVILATSLKICH 120 Query: 148 VNHVNHLLLSYSKQSLISRC-----YNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 + + L L Y K +I R + S K T +A+ +S S R E Sbjct: 121 LLIRSMLNLEYKKDKIIYRLEIDRSIEYMHSNLDQKITVKSLAKTANMSPSNYSRTFKKE 180 Query: 203 -GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 G S S L+ +RL + + K I+EIA E G+ P+ + F+NR+ ++P E Sbjct: 181 TGQSCISYLNQIRLEHVKRLLLEGDKTITEIALECGFSSPAYLSSSFYNRYKLSPTEY 238 >UniRef50_Q1GDX2 Transcriptional regulator, AraC family n=2 Tax=Ruegeria RepID=Q1GDX2_SILST Length = 386 Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQS--LISRCYNLLLSEPGT-KWTANKVARYLYISVSTL 195 A LL L + H L + S L L++ + +VA L +S TL Sbjct: 251 ADAGLLRLLLEHAELLRRRPDRNSNDLSITVERLIMDGMSEGDASLAQVAESLDMSQRTL 310 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R+LASEG SF +IL+ VR + AL +Q K +SEI+ GY S F + F ++ + Sbjct: 311 SRKLASEGTSFFAILEGVRKSLALRYLQQNEKSLSEISFALGYSSLSSFNDAFRRWYDQS 370 Query: 256 PREIR 260 P R Sbjct: 371 PGSYR 375 >UniRef50_A6GMI7 Putative transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GMI7_9BURK Length = 340 Score = 123 bits (309), Expect = 5e-27, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 71/178 (39%), Gaps = 10/178 (5%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQ-LKTSVSRGFSTKIQEHLAMGVLLSLGVNH 150 ++L+ V+ +R F P P Y + + + + + L H Sbjct: 152 RELFGVSLPLRVVEFAFAPNAPMAQYEAMFGCIPQFNASVNRATFDEQWLNLPLPKANEH 211 Query: 151 VNHLLLSYSKQSLISR---------CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 + + L R N LL++ + + ++A +++ TL RRL Sbjct: 212 SARFCETQLENLLSRRMQRGGVSAWLRNKLLADLSSSPSLAQIATDHFMTERTLRRRLTD 271 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 EG S++ +L +VR A + +T +SE++ GY PS F F N +PR+ Sbjct: 272 EGTSYRDLLAEVRQTMAEELLSSTGLSVSEVSARLGYSSPSAFIHAFQKWHNCSPRQF 329 >UniRef50_A3TUD8 Transcriptional regulator, AraC family protein n=3 Tax=Rhodobacteraceae RepID=A3TUD8_9RHOB Length = 336 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 149 NHVNHLLLSYS-KQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSF 206 H + L+ + ++ S +L++ + +++AR L +S TL+RRL EGVSF Sbjct: 221 RHADSLMEDLATNDTVRSAVEAHILADLHEGTLSMDRIARDLGMSRQTLYRRLKDEGVSF 280 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 + DD+R A+ + + E A G+ S F F ++P Sbjct: 281 AQVHDDLRRRMAMDYLNARKVSVGETAYLLGFSEASAFVRAFRRWTGVSPTAW 333 >UniRef50_Q1YPI7 Transcriptional regulator, AraC family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPI7_9GAMM Length = 344 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 47/92 (51%) Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPI 229 ++ P + + +K+A + IS TL RRL+ G +F +L +VR AL + I Sbjct: 252 MMRRLPEGEVSIDKLASLMNISRRTLQRRLSDRGTNFLQVLQEVRSRMALRYLSDNRLGI 311 Query: 230 SEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +EIA GY F+ F + ++PR+ R+ Sbjct: 312 TEIAFLLGYADQGSFSSAFKSWHGMSPRDYRR 343 >UniRef50_Q88GH1 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas RepID=Q88GH1_PSEPK Length = 362 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 3/130 (2%) Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYI 190 +Q+ A+ L + ++ L++ Y L + G T +A+ I Sbjct: 203 PVVQDRAALKTFLRSAPQGLVIRF--RNQNGLVAEVYRHLRALRYGQWPTLAALAQQQGI 260 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S ST R+L EG S+Q I D+VR A ++ I+EIA + G++ PS F F Sbjct: 261 SASTFRRQLEREGRSYQQIKDEVRRAMAFERLREGALSIAEIAEQAGFQEPSAFHRAFKK 320 Query: 251 RFNITPREIR 260 +P R Sbjct: 321 WTGQSPGSYR 330 >UniRef50_Q21WS8 Transcriptional regulator, AraC family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21WS8_RHOFD Length = 341 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%) Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 + L +++ +R LL+ G + + VA L++S +L R LA EG +FQ I D Sbjct: 225 DWLFVTFDHGPTSTRVREYLLAHSGADQSLDAVAAALFMSGRSLSRGLALEGGTFQRIKD 284 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 ++R + A+ + TT + I IA G+ F F TP R+ Sbjct: 285 EMRRDLAIERLVTTRESIDRIAALAGFDNTPAFHRAFRAWTGSTPGAYRR 334 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77634 Uncharacterized HTH-type transcriptional regulat... 269 6e-71 UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein ... 212 9e-54 UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n... 208 2e-52 UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulat... 206 5e-52 UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromob... 205 1e-51 UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 T... 198 1e-49 UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingell... 190 4e-47 UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein ... 189 1e-46 UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 ... 188 2e-46 UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 T... 187 3e-46 UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=... 187 3e-46 UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33... 186 7e-46 UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein ... 185 1e-45 UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein ... 183 4e-45 UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Ph... 183 4e-45 UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC ... 183 5e-45 UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like pr... 181 2e-44 UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein ... 181 2e-44 UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproduce... 177 4e-43 UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC ... 176 6e-43 UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein ... 176 7e-43 UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family ... 175 1e-42 UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein ... 173 4e-42 UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=... 173 7e-42 UniRef50_B0TKQ1 Transcriptional regulator, AraC family n=5 Tax=G... 171 2e-41 UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=P... 171 2e-41 UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=... 171 2e-41 UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein ... 170 3e-41 UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=A... 168 2e-40 UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 T... 167 3e-40 UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vi... 167 4e-40 UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=D... 165 1e-39 UniRef50_D0YX71 Transcriptional regulator AraC family protein n=... 164 2e-39 UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=A... 161 2e-38 UniRef50_A1U2J4 Transcriptional regulator, AraC family n=3 Tax=M... 160 6e-38 UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n... 158 2e-37 UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=V... 156 6e-37 UniRef50_C7PKQ0 Transcriptional regulator, AraC family n=1 Tax=C... 155 1e-36 UniRef50_D1E8F4 AraC protein n=21 Tax=Neisseria RepID=D1E8F4_NEIGO 155 1e-36 UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein ... 155 2e-36 UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=X... 154 2e-36 UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n... 154 2e-36 UniRef50_Q00753 Msm operon regulatory protein n=8 Tax=Streptococ... 153 6e-36 UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=A... 153 7e-36 UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=P... 151 2e-35 UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, A... 151 2e-35 UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC... 151 3e-35 UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vi... 151 3e-35 UniRef50_C6W363 Transcriptional regulator, AraC family n=1 Tax=D... 150 3e-35 UniRef50_D2QK57 Transcriptional regulator, AraC family n=2 Tax=S... 150 4e-35 UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=m... 150 6e-35 UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=... 149 7e-35 UniRef50_B1Q2A8 Transcriptional activator for nphA1A2 n=4 Tax=No... 149 9e-35 UniRef50_A7VNA5 Putative uncharacterized protein n=1 Tax=Clostri... 149 1e-34 UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX 149 1e-34 UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Ac... 149 1e-34 UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepI... 148 1e-34 UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=D... 148 2e-34 UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=un... 147 3e-34 UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein ... 147 3e-34 UniRef50_C1DHF9 Transcription activator in PHB biosynthesis, Ara... 147 3e-34 UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=P... 147 4e-34 UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacte... 147 4e-34 UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Gr... 147 4e-34 UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=D... 147 5e-34 UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein ... 147 5e-34 UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC ... 146 6e-34 UniRef50_A3M7C3 Putative transcriptional regulator (AraC family)... 146 6e-34 UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=D... 146 7e-34 UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=C... 146 7e-34 UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein ... 146 8e-34 UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enteroba... 145 1e-33 UniRef50_B9JBF3 Transcriptional regulator protein n=1 Tax=Agroba... 145 1e-33 UniRef50_B5JV53 Transcriptional regulator, AraC family n=1 Tax=g... 145 1e-33 UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonel... 145 1e-33 UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein ... 145 1e-33 UniRef50_A4XSK5 Transcriptional regulator, AraC family n=10 Tax=... 145 2e-33 UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma pro... 145 2e-33 UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC... 145 2e-33 UniRef50_A8S939 Putative uncharacterized protein n=1 Tax=Faecali... 145 2e-33 UniRef50_C5T965 Transcriptional regulator, AraC family n=1 Tax=A... 145 2e-33 UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=... 145 2e-33 UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=P... 145 2e-33 UniRef50_P32326 Urease operon transcriptional activator n=12 Tax... 144 2e-33 UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein ... 144 3e-33 UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnos... 144 3e-33 UniRef50_C7PHM8 Transcriptional regulator, AraC family n=1 Tax=C... 144 4e-33 UniRef50_Q7MC65 AraC-type DNA-binding domain-containing protein ... 143 4e-33 UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=P... 143 4e-33 UniRef50_Q5ZTY8 Transcriptional regulator OruR, AraC family n=4 ... 143 5e-33 UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter ... 143 5e-33 UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=m... 143 5e-33 UniRef50_Q0VMP4 Transcriptional regulator, AraC family n=2 Tax=A... 143 6e-33 UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacte... 143 6e-33 UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=B... 143 7e-33 UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=P... 143 7e-33 UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=... 143 7e-33 UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n... 143 8e-33 UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=B... 143 8e-33 UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n... 142 8e-33 UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=m... 142 9e-33 UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=P... 142 9e-33 UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=... 142 1e-32 UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein ... 142 1e-32 UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein ... 142 1e-32 UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=B... 142 1e-32 UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=... 142 1e-32 UniRef50_Q1N621 AraC-type DNA-binding domain-containing protein ... 142 1e-32 UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family)... 142 2e-32 UniRef50_A9ATI3 AraC family transcriptional regulator n=26 Tax=B... 142 2e-32 UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n... 142 2e-32 UniRef50_C1AVG9 Putative AraC family transcriptional regulator n... 142 2e-32 UniRef50_B5JS07 AraC-type DNA-binding domain-containing protein ... 142 2e-32 UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=P... 141 2e-32 UniRef50_Q5YRJ4 Putative transcriptional regulator n=2 Tax=Actin... 141 2e-32 UniRef50_A8ZYY6 Transcriptional regulator, AraC family n=1 Tax=D... 141 2e-32 UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=C... 141 2e-32 UniRef50_Q47XU2 Transcriptional regulator, AraC family n=1 Tax=C... 141 2e-32 UniRef50_C6LF57 Transcriptional regulator, AraC family n=1 Tax=B... 141 2e-32 UniRef50_Q2BN29 Transcriptional regulator, AraC family protein n... 141 2e-32 UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n... 141 3e-32 UniRef50_A3Y8Y2 Putative uncharacterized protein n=1 Tax=Marinom... 141 3e-32 UniRef50_D0LBE5 Helix-turn-helix-domain containing protein AraC ... 140 3e-32 UniRef50_Q094J0 Transcriptional regulator, AraC family protein n... 140 4e-32 UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=S... 140 4e-32 UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=M... 140 4e-32 UniRef50_P07642 Arabinose operon regulatory protein n=160 Tax=Pr... 140 4e-32 UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein ... 140 5e-32 UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=... 140 5e-32 UniRef50_A6C2Z3 CheY-like receiver domain n=1 Tax=Planctomyces m... 140 6e-32 UniRef50_D2MNX8 Transcriptional regulator, AraC family n=1 Tax=B... 140 6e-32 UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein ... 140 6e-32 UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=D... 140 7e-32 UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=M... 140 7e-32 UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein ... 140 7e-32 UniRef50_B8FM47 Transcriptional regulator, AraC family n=1 Tax=D... 140 7e-32 UniRef50_A4BF80 Transcriptional regulator, AraC family protein n... 140 7e-32 UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=G... 139 7e-32 UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=g... 139 8e-32 UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=... 139 9e-32 UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=... 139 9e-32 UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=P... 139 9e-32 UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family)... 139 9e-32 UniRef50_B7RNE6 Transcriptional regulatory protein n=1 Tax=Roseo... 139 1e-31 UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limno... 139 1e-31 UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax... 139 1e-31 UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=m... 139 1e-31 UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n... 138 1e-31 UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=P... 138 1e-31 UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS fa... 138 1e-31 UniRef50_A4BIK9 AraC-type DNA-binding domain-containing protein ... 138 1e-31 UniRef50_UPI0000F30067 putative transcriptional regulator AraC/X... 138 2e-31 UniRef50_Q1YQ09 Probable transcriptional regulator n=2 Tax=uncla... 138 2e-31 UniRef50_B4WYI1 Transcriptional regulator, AraC family protein n... 138 2e-31 UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=B... 138 2e-31 UniRef50_C6LDG4 Transcriptional regulator, AraC family n=3 Tax=C... 138 2e-31 UniRef50_A3WY00 Transcriptional regulator, AraC family protein n... 138 2e-31 UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Morit... 138 2e-31 UniRef50_A0Z3K7 Transcriptional regulator, AraC family protein n... 138 2e-31 UniRef50_D0I5P8 Transcriptional regulator AraC family n=1 Tax=Gr... 138 2e-31 UniRef50_C4ZF37 L-rhamnose operon transcriptional activator n=4 ... 138 2e-31 UniRef50_Q1DD76 Transcriptional regulator, AraC family n=1 Tax=M... 138 2e-31 UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marin... 138 2e-31 UniRef50_A9BZN3 Transcriptional regulator, AraC family n=1 Tax=D... 138 2e-31 UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=m... 138 3e-31 UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabac... 137 3e-31 UniRef50_C4FY02 Putative uncharacterized protein n=1 Tax=Catonel... 137 3e-31 UniRef50_Q2S7F1 AraC-type DNA-binding domain-containing protein ... 137 4e-31 UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=A... 137 4e-31 UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=A... 137 4e-31 UniRef50_P72171 Ornithine utilization regulator n=7 Tax=Pseudomo... 136 5e-31 UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=S... 136 5e-31 UniRef50_B5J4U5 Transcriptional regulator, AraC family protein n... 136 5e-31 UniRef50_B8KM41 Helix-turn-helix-domain containing protein, AraC... 136 5e-31 UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostri... 136 6e-31 UniRef50_C3K2A2 Putative putative AraC-family regulatory protein... 136 6e-31 UniRef50_D1N8D6 Transcriptional regulator, AraC family n=1 Tax=V... 136 7e-31 UniRef50_A3V8S6 Virulence regulating protein n=1 Tax=Loktanella ... 136 7e-31 UniRef50_Q0VLF5 Transcriptional regulator, AraC family n=2 Tax=A... 136 7e-31 UniRef50_P68913 Uncharacterized HTH-type transcriptional regulat... 136 8e-31 UniRef50_B5JY44 Transcriptional regulator, AraC family, putative... 136 8e-31 UniRef50_B7VPE5 Similar to transcriptional regulator n=5 Tax=Vib... 136 8e-31 UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n... 136 8e-31 UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=C... 136 9e-31 UniRef50_Q2SAU6 AraC-type DNA-binding domain-containing protein ... 136 1e-30 UniRef50_B7H2M9 Bacterial regulatory helix-turn-helix protein, A... 136 1e-30 UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein ... 135 1e-30 UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=m... 135 1e-30 UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein ... 135 1e-30 UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein ... 135 1e-30 UniRef50_B0U9X7 Transcriptional regulator, AraC family n=10 Tax=... 135 1e-30 UniRef50_C0EAY1 Putative uncharacterized protein n=1 Tax=Clostri... 135 1e-30 UniRef50_A0YC38 Transcriptional regulator OruR n=3 Tax=unclassif... 135 1e-30 UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=g... 135 2e-30 UniRef50_C7PD66 Transcriptional regulator, AraC family n=3 Tax=B... 135 2e-30 UniRef50_B5JRR7 Transcriptional regulator, AraC family, putative... 135 2e-30 UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serra... 135 2e-30 UniRef50_B4X114 Transcriptional regulator, AraC family protein n... 135 2e-30 UniRef50_C4Z9T9 Ada regulatory protein/6-O-methylguanine-DNA met... 135 2e-30 UniRef50_C6D3L6 Transcriptional regulator, AraC family n=1 Tax=P... 135 2e-30 UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=A... 135 2e-30 UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitre... 135 2e-30 UniRef50_B2I366 AraC-type DNA-binding domain-containing protein ... 135 2e-30 UniRef50_Q1N6M1 Probable transcriptional regulator n=1 Tax=Berma... 134 2e-30 UniRef50_A6FDG0 Transcriptional regulator, AraC family n=1 Tax=M... 134 2e-30 UniRef50_C6D094 Transcriptional regulator, AraC family n=1 Tax=P... 134 2e-30 UniRef50_Q0K5C6 Transcriptional regulator, AraC-family n=2 Tax=C... 134 3e-30 UniRef50_D0C0B4 Virulence regulating protein n=1 Tax=Acinetobact... 134 3e-30 UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glut... 134 3e-30 UniRef50_Q2SDE8 AraC-type DNA-binding domain-containing protein ... 134 3e-30 UniRef50_Q1N5E2 Transcriptional Regulator, AraC family protein n... 134 4e-30 UniRef50_Q0VP86 Transcriptional regulator, AraC family n=2 Tax=A... 134 4e-30 UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in... 133 4e-30 UniRef50_Q3IEQ3 Putative transcriptional regulator containing an... 133 4e-30 UniRef50_A1U5N3 Transcriptional regulator, AraC family n=2 Tax=G... 133 4e-30 UniRef50_A4BKJ5 Probable transcriptional regulator n=1 Tax=Reine... 133 4e-30 UniRef50_A0Y864 Transcriptional regulator, AraC family protein n... 133 4e-30 UniRef50_A3M5I9 Transcriptional regulator AraC family n=8 Tax=Pr... 133 4e-30 UniRef50_Q0JYY4 Transcriptional regulator, AraC-family n=2 Tax=C... 133 4e-30 UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=V... 133 4e-30 UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH... 133 5e-30 UniRef50_UPI00016A75A2 transcriptional regulator, AraC family pr... 133 5e-30 UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=C... 133 5e-30 UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=m... 133 5e-30 UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=R... 133 6e-30 UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 ... 133 6e-30 UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=M... 133 7e-30 UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=M... 133 8e-30 UniRef50_Q65QM2 AraC protein n=1 Tax=Mannheimia succiniciproduce... 132 9e-30 UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type... 132 9e-30 UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=A... 132 9e-30 UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=C... 132 9e-30 UniRef50_Q0G2J4 Transcriptional regulator, AraC family protein n... 132 9e-30 UniRef50_C7RQL9 Transcriptional regulator, AraC family n=1 Tax=C... 132 1e-29 UniRef50_Q390L7 Transcriptional regulator, AraC family n=2 Tax=B... 132 1e-29 UniRef50_A0AX39 Transcriptional regulator, AraC family n=6 Tax=P... 132 1e-29 Sequences not found previously or not previously below threshold: UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n... 150 4e-35 UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Strepto... 140 4e-32 UniRef50_C6D0B3 Transcriptional regulator, AraC family n=1 Tax=P... 139 8e-32 UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1... 138 2e-31 UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnos... 138 2e-31 UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostri... 138 2e-31 UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=C... 137 4e-31 UniRef50_B3C7N6 Putative uncharacterized protein n=1 Tax=Bactero... 136 8e-31 UniRef50_A3CL13 AraC-type DNA-binding domain-containing protein,... 134 3e-30 UniRef50_A6VAM9 Transcriptional regulator, AraC family n=3 Tax=P... 133 5e-30 UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=P... 133 5e-30 UniRef50_D0LBD5 Helix-turn-helix-domain containing protein AraC ... 133 6e-30 UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=... 132 9e-30 UniRef50_A8S9Z6 Putative uncharacterized protein n=1 Tax=Faecali... 132 1e-29 >UniRef50_P77634 Uncharacterized HTH-type transcriptional regulator ybcM n=37 Tax=Enterobacteriaceae RepID=YBCM_ECOLI Length = 265 Score = 269 bits (688), Expect = 6e-71, Method: Composition-based stats. Identities = 265/265 (100%), Positives = 265/265 (100%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP Sbjct: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE Sbjct: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT Sbjct: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC Sbjct: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 Query: 241 PSRFTERFHNRFNITPREIRKASRE 265 PSRFTERFHNRFNITPREIRKASRE Sbjct: 241 PSRFTERFHNRFNITPREIRKASRE 265 >UniRef50_C4T4E3 AraC-type DNA-binding domain-containing protein n=3 Tax=Yersinia RepID=C4T4E3_YERIN Length = 269 Score = 212 bits (540), Expect = 9e-54, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 139/262 (53%), Gaps = 1/262 (0%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 + + + EI + H +H+V PALC +RQG K++ W + + +ILFP Sbjct: 4 INHSQMVISSAEIVARRAHTLHQVTVFAPALCHVRQGSKLVQWGAQAASAGQSSLILFPA 63 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYT-VTDQIRNKTSFFLPQNPELIYCWE 120 G E I N PE G Y ++M+YLP L+ F+ Y + S +P + W+ Sbjct: 64 GAEVSIANTPERGHYCSDMVYLPQSLLRRFRHWYGALAVTPAPAPSLCVPLDIHTRLAWD 123 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 L +V + +H AMGVLL+L + +LL + + +LL +P W+ Sbjct: 124 SLLLNVKGHAPDALLQHAAMGVLLALYLAGQAGVLLIDRRDKWAEQVQQVLLLDPARNWS 183 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 + VAR L+I STL R+L E SF+ IL++VR+ AL A+QTT I EIA ++GY Sbjct: 184 VSDVARSLHIGDSTLRRKLMQEDRSFRMILEEVRMGCALHALQTTSLSIGEIAAQHGYIS 243 Query: 241 PSRFTERFHNRFNITPREIRKA 262 PSRFT RF F +TPR +R+A Sbjct: 244 PSRFTSRFQQHFGLTPRRLREA 265 >UniRef50_C5BFY6 Transcriptional regulator, AraC family protein n=2 Tax=Edwardsiella RepID=C5BFY6_EDWI9 Length = 266 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 98/256 (38%), Positives = 139/256 (54%), Gaps = 1/256 (0%) Query: 10 KIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIEN 69 +++I + H++ RV PALCR+RQG K I W + ++LFP G E + N Sbjct: 10 TVQQISARQSHQLRRVTLFSPALCRVRQGSKTIQWGERYEVTGGDSLVLFPGGSEVSMAN 69 Query: 70 YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQI-RNKTSFFLPQNPELIYCWEQLKTSVSR 128 AG Y AEMLYLP L+ F+K Y S LP P L W+ + ++ Sbjct: 70 QTGAGYYRAEMLYLPAALLRQFRKHYPQAVPSDGTTASLSLPMTPALTLLWDTMMDALRA 129 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 + + HLA +LL+L + LLL+ L + LLL +P W A +A+ L Sbjct: 130 PLAPPLLNHLAESLLLALQPSGHTALLLNERHDRLTEQIQQLLLLDPAYAWQATDIAQRL 189 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +++ STL RRL +EG F+ ILDDVRL AL A+Q+ PI +IA ++GY PSRFT RF Sbjct: 190 HMAESTLRRRLNAEGKRFRDILDDVRLGQALLALQSGNTPIGDIASQSGYASPSRFTARF 249 Query: 249 HNRFNITPREIRKASR 264 R+ +TP +R+A R Sbjct: 250 VRRYGLTPSALRQAMR 265 >UniRef50_C4UFJ5 Uncharacterized HTH-type transcriptional regulator ybcM n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UFJ5_YERRU Length = 275 Score = 206 bits (525), Expect = 5e-52, Method: Composition-based stats. Identities = 122/259 (47%), Positives = 177/259 (68%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF 65 + L ++EI + H +H+VK LMPALCR+RQG+K+I W+ HT T D++Q+I+FP GYE Sbjct: 2 QAKLSMQEISSRQAHVLHKVKLLMPALCRVRQGRKIIEWQGHTETADHSQLIVFPAGYEL 61 Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 I N P YL+E++Y+P+ + + K Y + + ++ F + EL YCW+QLK + Sbjct: 62 QIANIPAGEGYLSEIIYIPLSITNFYLKHYPLPHKKKDVQRFCIKLTNELEYCWKQLKFA 121 Query: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 + +S+++ EH+ +G+LL L ++ L S ++ +RC +LL+ P +W+A VA Sbjct: 122 LDHDYSSQLLEHMLLGLLLILRETSAANIFLDSSDNTVTARCQDLLILSPSARWSARTVA 181 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 L++SVST HR LA+EG SFQ ILDDVRL NAL+AIQTT KPI EIAR+NGY+CPSRFT Sbjct: 182 EQLHMSVSTFHRHLAAEGGSFQQILDDVRLGNALNAIQTTSKPIGEIARDNGYQCPSRFT 241 Query: 246 ERFHNRFNITPREIRKASR 264 RF R+ ITPR +R+A + Sbjct: 242 SRFQKRYQITPRALRQAIQ 260 >UniRef50_Q7NTA1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTA1_CHRVO Length = 266 Score = 205 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 87/262 (33%), Positives = 133/262 (50%), Gaps = 1/262 (0%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 +A + ++ EIR + RV MPALCR+R G K I ++ +Q++L P Sbjct: 4 IAHRLSRIEAGEIRARLPQHVRRVPVCMPALCRVRHGGKRIRLGDREMSAGPSQLVLLPA 63 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQ-KLYTVTDQIRNKTSFFLPQNPELIYCWE 120 G E I N P G YLA+++ LP DL++ F+ + + + R + L W Sbjct: 64 GCELDIVNLPGPGGYLADVVGLPPDLLDRFRDRHGPLLLRQRPGQELCPTMDGPLASAWT 123 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 L S+ + +I++H A GVLL+L + LL SL L++ +P W+ Sbjct: 124 LLMDSLHGNAAPEIRQHHAEGVLLALALAGQAGPLLREKTDSLTQGLRQLMMLDPAAPWS 183 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 AR L + STL RRLA E FQ+IL++VR+ AL +Q + I++IA +GY Sbjct: 184 VETAARRLNLGASTLRRRLAEEDAGFQAILEEVRMGLALQQVQDGRRSIAQIAEASGYAS 243 Query: 241 PSRFTERFHNRFNITPREIRKA 262 SRF RF R+ +TP +R+ Sbjct: 244 ASRFAARFRQRYGLTPSALRRT 265 >UniRef50_A6T768 Bacterial regulatory protein, AraC family n=48 Tax=Enterobacteriaceae RepID=A6T768_KLEP7 Length = 262 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 138/252 (54%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L EI + +HRV+ PALCR+++G KVI + Q+I+ P E + Sbjct: 11 LTAAEITTRRLCRLHRVRLFSPALCRVKRGSKVIVQGESRVLATPQQLIVLPADVELEVI 70 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N PE GL+ +++L L +L+ F+ Y TS P EL + W+ + +V Sbjct: 71 NQPENGLFCSDLLSLTPELLTRFKTRYLSEPPPGRLTSLCAPVTTELAFMWQSVLQAVRE 130 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 G S +Q+H MG+LL+L LL +Q L ++ L++ P W+ ++VA+ L Sbjct: 131 GLSVALQQHQTMGLLLALYEAGYAGPLLVERQQDLSAQVRQLIMLSPAQAWSVSRVAKML 190 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 ++ STL RRL E SF+ I+++VR+ +AL +QTT +PI EIA+ +GY+ SRFT RF Sbjct: 191 FLGESTLRRRLQQESQSFRQIVEEVRMAHALGQLQTTSRPIGEIAQNSGYQSGSRFTARF 250 Query: 249 HNRFNITPREIR 260 + + P+ +R Sbjct: 251 RQHYGLLPKHVR 262 >UniRef50_C4GLE7 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GLE7_9NEIS Length = 264 Score = 190 bits (483), Expect = 4e-47, Method: Composition-based stats. Identities = 63/256 (24%), Positives = 116/256 (45%), Gaps = 5/256 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L+ + HK + + P + R+ G+K + + LT Q +L G F + Sbjct: 13 LETGSVLQHKKLSFAQSQFAQPMIVRVLHGRKTLRYAGGELTATTGQWLLIAGGQSFDVL 72 Query: 69 NYPEAGL-YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P+A Y +E L L + + F + + + + L + + ++ V Sbjct: 73 NEPDAAQGYRSEWLMLGDEWVAQFFAQHPSRETL--DLARVLRPDAAWDEAFLRVVQGVQ 130 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + M +L L + +S Q L + L+ + W VA+ Sbjct: 131 TRLPETVLAARTMELLAWLA--QAGAVFNPHSAQRLSKQIRQLIAQDMAASWQIADVAQR 188 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L +S +TL RRLA+EG SF+ +L ++++ AL+ +QT+ ++++A GY+ P+RF + Sbjct: 189 LGMSEATLRRRLANEGASFRELLGNIKMMRALTLLQTSPLGVAQVAYAVGYESPARFAAK 248 Query: 248 FHNRFNITPREIRKAS 263 F F TP ++RKA+ Sbjct: 249 FRAHFGCTPSDVRKAA 264 >UniRef50_C1DBS2 AraC-type DNA-binding domain-containing protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBS2_LARHH Length = 262 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 68/251 (27%), Positives = 106/251 (42%), Gaps = 3/251 (1%) Query: 13 EIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 R + ++ V L + G K + V + +L P + IEN P Sbjct: 15 TYRARRPQQLRAVPVAQTTLITVESGIKRVVCGGQGWQVQAGEWLLLPALAQVQIENRPG 74 Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 G YLA L L + + + L LP + + W+ R Sbjct: 75 NGGYLARCLPLDDEWLAALPALTDRLPASGGPAICCLPPDACIQEAWQHWCAGQQRQRPG 134 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 +Q + +LL++ + LL + + L R LL ++ A +++R L +S Sbjct: 135 PVQRQRMLELLLAICLAGGGRGLLRGAAE-LAPRVNRLLGTDLT--LGAAELSRRLAMSE 191 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 STL R LA EG S + + + RL AL+ +QT+ PI ++A GY SRF+ RF RF Sbjct: 192 STLRRHLADEGHSLRELREHCRLERALALVQTSSLPIGQVAEACGYASASRFSARFRTRF 251 Query: 253 NITPREIRKAS 263 TPR +R A Sbjct: 252 GCTPRSLRAAR 262 >UniRef50_A0KMW4 Transcriptional regulator, AraC/XylS family n=2 Tax=Aeromonas RepID=A0KMW4_AERHH Length = 270 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 5/258 (1%) Query: 5 GKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYE 64 L++ + +HRV P + + QG K + W+ L D +L P G++ Sbjct: 2 STPLLQLHHYLGIRQQPLHRVLIYAPTIIWVEQGHKQLWWQEKRLAFDQASWLLIPAGHQ 61 Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 N PE G + + L L + + Q L +P L +C+E + + Sbjct: 62 LTFVNQPEQGKFRSRALTL----LTPPPVEWLGATQAGPLREPRLTVSPALAFCFELVCS 117 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 R + Q L G L LL +L R L EPG T V Sbjct: 118 MADRRLNEATQAQLLQGFYAELQAAGGLDLLFPAHTMTLGERLARYLGVEPGADHTLEGV 177 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 A + +S +++ R+LA+EG SF+ +L VR+++AL+ +Q + P+ E A GY PSRF Sbjct: 178 APHFAMSRASMARKLAAEGRSFRQLLTQVRMSHALTLLQQGLVPL-ETALACGYDSPSRF 236 Query: 245 TERFHNRFNITPREIRKA 262 RF F +TP + + Sbjct: 237 AARFKQEFGLTPYQYLRT 254 >UniRef50_A7K218 Transcriptional regulator AraC/XylS family n=5 Tax=Vibrio RepID=A7K218_VIBSE Length = 259 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 2/256 (0%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 ++ R + ++ V+ P++ +I +G K + W+ + + I+L Sbjct: 3 HQYQVTLFRAEQQQKLRNVRIHSPSIIQIIKGSKRLFWKDEAFDILHPNIMLCEANASLN 62 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 EN P+ G +L+ M + S + L + + L L + Sbjct: 63 FENLPQQGRFLSRMFSF--HCVPSDEMLELSMSNALGNYVPAVETDKALQATLNALFSFE 120 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 S Q + MG+ L + H L + S S + L PG VA Sbjct: 121 RESLSEATQRYWMMGLYQQLAERGLLHRLFTSSNTSFSQKLSRYLSRSPGDDHPLEFVAE 180 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 +S +TL R+L EG ++ +L +VRLN+AL +Q ++ +A+ GY+ RF++ Sbjct: 181 RFAMSRATLIRKLKQEGTQYREVLAEVRLNHALYLMQNGSYNVALLAQLCGYQSEGRFSQ 240 Query: 247 RFHNRFNITPREIRKA 262 RF +F +TP E K Sbjct: 241 RFKGKFGLTPSEYIKT 256 >UniRef50_A4TK67 Transcriptional regulator, AraC family n=35 Tax=Enterobacteriaceae RepID=A4TK67_YERPP Length = 291 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 74/259 (28%), Positives = 113/259 (43%), Gaps = 6/259 (2%) Query: 10 KIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIEN 69 I H + V P L + +G K+I WE + +I + G I N Sbjct: 13 SAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQECVILPGEIAVINSGQTIDIIN 72 Query: 70 -YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP-QNPELIYCWEQLKTSVS 127 L+ ++ L+ LI +F T D + PE I + + S+S Sbjct: 73 GLSNDDLFFSQQLHCDPSLIAAFAHHPTSADLGVIPGVMAIRNLAPEFINTFGNIFNSIS 132 Query: 128 R--GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 T I +H + +LL L V +L L + L S+P W+A++VA Sbjct: 133 ENSDIPTVIIKHRMLELLLWLAQRDVKFIL--NDGNGLSEKVRRCLASDPHKIWSASEVA 190 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 ++ +S L R+LA+E + + ++ DVR+ +AL +Q T PIS IA + GY+ SRF Sbjct: 191 EHMTMSEVVLRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFA 250 Query: 246 ERFHNRFNITPREIRKASR 264 ERF RF P IR R Sbjct: 251 ERFRKRFGFAPTAIRGHHR 269 >UniRef50_A5F2L6 Transcriptional regulator, AraC/XylS family n=33 Tax=Vibrionaceae RepID=A5F2L6_VIBC3 Length = 262 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 4/254 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 ++ + + + +H V P + + G K + W TL + ++ P Sbjct: 6 VQTGQFKGLRKQPLHNVLIYAPTIIWVTHGNKQLWWHDTTLNFHSADWLMLPANQYLTFV 65 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N P+ + + L L + T + Q + EL YC+E L + Sbjct: 66 NVPQQAQFYSRTLTLHEAPP---VEWITQSSQYERNEQPRVRVTAELAYCFELLYEMNQQ 122 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 S + Q +G L HLL S+ R L PG + V+ + Sbjct: 123 SLSEETQRQFVLGFYAQLRDEKALHLLFPSDNASMRERLARYLSVNPGDEHNIETVSAHF 182 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S +TL R LA+EG F+ +L +VR+N AL+ +Q ++P+ E+A GY+ +RF+ RF Sbjct: 183 AMSRATLARHLAAEGTGFREVLSEVRMNYALALLQE-LRPLMEVAVACGYQSLTRFSARF 241 Query: 249 HNRFNITPREIRKA 262 ++ +TP + + Sbjct: 242 KQQYRLTPYQYLQT 255 >UniRef50_B2I0Q2 AraC-type DNA-binding domain-containing protein n=4 Tax=Acinetobacter RepID=B2I0Q2_ACIBC Length = 270 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 70/262 (26%), Positives = 104/262 (39%), Gaps = 7/262 (2%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 ++ NL ++ +I V P L + G K + +T + I Sbjct: 12 LVVHSNLNLPFAVYSAYQEQKITNVPISKPLLIIVLSGFKELG-KTENIKCVAGSFIFLA 70 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 + N P+ Y A ++ + + ++ NP L Sbjct: 71 NSSSIDMRNIPDQEEYFALLIEFDFEDFNDLPQNTGT-----SQNYVQGQLNPLLESALH 125 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 Q S + +L + + + +SL R L+ T+ T Sbjct: 126 QFID-FSLVAPPSAFKFRKRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELT 184 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 A +A L++S STL R+L SEG S Q I + VRL + L IQTT I IA E GY+ Sbjct: 185 AEFIAAQLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQS 244 Query: 241 PSRFTERFHNRFNITPREIRKA 262 SRFTE+F N F ITPRE+RK Sbjct: 245 QSRFTEQFKNLFGITPRELRKT 266 >UniRef50_Q2SCQ2 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SCQ2_HAHCH Length = 276 Score = 183 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 75/257 (29%), Positives = 115/257 (44%), Gaps = 7/257 (2%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L R + +H V + P L + +G KV++ + L + + IL P G E Sbjct: 19 LPFSVYRCLQPQNLHGVPFIDPCLIIVLRGAKVLSLQPE-LACRSGEFILAPAGIELQFM 77 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N PE G Y+A ++ +E+ V+ + + L Q + Sbjct: 78 NLPE-GEYIAVVIGFCASDLEAI----PVSAPPDRDGAAIARVDRTLAEFLNQWINWIDV 132 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 ++ + L LL S S S + +L+ EP W+ +++R L Sbjct: 133 S-PPELWALRRKELAHLLYARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLL 191 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S STL RRL SE F+ +L+ VRL L QTT+ PI+ IA + GY+ SRFTERF Sbjct: 192 AVSESTLRRRLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTERF 251 Query: 249 HNRFNITPREIRKASRE 265 RF +TP E+R+ E Sbjct: 252 KQRFGMTPSELRQTRLE 268 >UniRef50_D0Z2K1 Transcriptional regulator AraC family n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2K1_LISDA Length = 264 Score = 183 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 114/262 (43%), Gaps = 7/262 (2%) Query: 5 GKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYE 64 + + I + + + + V L+P++ + QG+K W + +L P Sbjct: 2 ATSAIVITQYQGQQAQNLRNVPILLPSIVAVEQGEKQFQWHGRWIRFHKKNWLLIPAHSR 61 Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC----WE 120 N P + + + LI ++ ++ Q + S L ++ Sbjct: 62 ITFVNNPHQTQFRSTQISF---LIPPTAEMIQLSQQNADTVSNHLDSPEFIVDDEGRYLW 118 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT 180 QL S+ + S IQ+ L G+ L HLL + + S + +P +T Sbjct: 119 QLLLSMPKELSQAIQQQLVNGLYQYLAEKGQLHLLYAPQEISWTEKLTQFFSQDPSQNYT 178 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 +V + +S +TL RRL E F+ +L VR+ +ALS +Q + + E+A++ GY+ Sbjct: 179 IEQVCQQFGLSKATLMRRLNDESTQFREVLAQVRMGHALSLLQEKSQTVLELAQQCGYQS 238 Query: 241 PSRFTERFHNRFNITPREIRKA 262 RFT+RF +F ++P++ +K Sbjct: 239 EVRFTQRFQKQFGLSPKQYQKT 260 >UniRef50_A6WTM9 Helix-turn-helix-domain containing protein AraC type n=7 Tax=Shewanella RepID=A6WTM9_SHEB8 Length = 252 Score = 183 bits (465), Expect = 5e-45, Method: Composition-based stats. Identities = 64/254 (25%), Positives = 118/254 (46%), Gaps = 4/254 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 +++ E + + +V P++ R+ G+K + W+ ++ V Q++L P G Sbjct: 2 IRLFEYDSKQAQSLSQVPVHQPSIIRVIHGEKSLLWQDESVLVGQGQLLLIPAGSHISFV 61 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N P G Y A L LP DL + + + W L S+S Sbjct: 62 NRPFLGRYRAVQLLLPHDLPQGILSSTADW----RDPMPVQNVSRAVDLAWNALLQSLSL 117 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 + +Q H +LLSL L ++++S+ L+ P W ++A L Sbjct: 118 SLADSVQLHYLAALLLSLPDKRSVSWLYGHTQRSVTQAALALMSVSPAAPWQQEEIADKL 177 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 ++S ++L R+LA E SF+ +L +VRL++ L+ +Q + +P+ ++A GY+ +F+ RF Sbjct: 178 HMSTASLRRKLALEDTSFRQLLVEVRLSHGLAMLQNSGEPLLQVALACGYQSAEKFSLRF 237 Query: 249 HNRFNITPREIRKA 262 +F +TP R+ Sbjct: 238 KQQFGLTPAAYRRT 251 >UniRef50_Q5DYZ5 Transcriptional regulatory protein, AraC-like protein n=2 Tax=Vibrio fischeri RepID=Q5DYZ5_VIBF1 Length = 261 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 57/258 (22%), Positives = 115/258 (44%), Gaps = 1/258 (0%) Query: 5 GKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYE 64 T LK++ + V P++ ++ G K + T +D +L + Sbjct: 2 SDTLLKVQTYSGVNDQHLRNVHIYAPSIIWVKSGIKRVIQGTENYDIDAQLWLLTAANQD 61 Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 N P + + + + + ++ R++ + + L Y + L Sbjct: 62 LSFINKPAKDHFYSVQICFLFPPTPEMIEE-SKENRRRHEHLNAIKVSSTLAYGFSLLIE 120 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 S+ S+ +Q+H L H+L S S SL ++ +P + ++V Sbjct: 121 MSSQNLSSNVQKHHLFAFYQQLVEVGALHVLFSESHDSLQNKLSAYFSKDPAENYQLDEV 180 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 + +S +TL RRL +G +F+++L +VR+++ALS +Q + ++A + GY+ +RF Sbjct: 181 SHAFSMSRATLIRRLNQDGTNFRTVLANVRMSHALSLMQERKQSQLDLALQCGYQSETRF 240 Query: 245 TERFHNRFNITPREIRKA 262 ++RFH +F ITP++ K Sbjct: 241 SQRFHQQFGITPKQYMKT 258 >UniRef50_Q7MCG4 AraC-type DNA-binding domain-containing protein n=6 Tax=Vibrio RepID=Q7MCG4_VIBVY Length = 268 Score = 181 bits (459), Expect = 2e-44, Method: Composition-based stats. Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 3/260 (1%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF 65 K+ +++ R + V L P++ +I G K + W+ TL +D + ++L + Sbjct: 6 KSLIQLAYYRGVNTQALRNVAILTPSIIQITTGSKRLYWQETTLDIDAHSLLLCRANHAL 65 Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQ---NPELIYCWEQL 122 + EN P+AG + + + L + P + L + L Sbjct: 66 HFENLPQAGQFSSRQFCFSLPPTSEMLSLSERNGTTTPHLTLHHPVVRCDKALNHTLNLL 125 Query: 123 KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTAN 182 ST+ G L V HL+ + QS + + +P Sbjct: 126 AGLPLDELSTETLTFWLYGFYQQLAERGVLHLMFTPQGQSFEQKLSEFIAQQPSKDHQIE 185 Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 ++ IS +TL RRL EG ++ +L VRL++AL+ +Q + +E++ GY+ P Sbjct: 186 DACQHFAISKATLIRRLKEEGTQYREVLSKVRLSHALNLMQQGHRKTAELSLMCGYQSPD 245 Query: 243 RFTERFHNRFNITPREIRKA 262 +F++RF RF ++PRE K Sbjct: 246 KFSQRFRQRFGLSPREYCKT 265 >UniRef50_Q65QI0 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QI0_MANSM Length = 284 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 124/258 (48%), Gaps = 7/258 (2%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 + + + R+ P L I+ G+K + W LT+ +++L G F + N Sbjct: 15 LGSVIQQRKLLYTRMAVDEPTLLYIQVGQKTLRWRGQELTIQAGEMVLLAAGQTFDVLNN 74 Query: 71 PEA--GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 P+A G Y A + L +++ F L+ V ++ + L ++ ++ ++ Sbjct: 75 PDAKLGFYQAGWIALEQRVVDEFADLFGVETYVQELAK--IQPLAPLKAHFDVVRQALEN 132 Query: 129 GFSTKI-QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + ++ + +L L H++ + + K +L+ + ++ S +WTA +AR Sbjct: 133 DEAPELVLKLKLFELLAWLKAEHLS--FVPHEKHNLLRQIRKMIASNTAFEWTAETIARQ 190 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L++S ++L R L +F+ +L DVR++ AL+ +Q T ++ IA E GY PSRFT R Sbjct: 191 LHLSETSLRRALQKSDTTFREVLTDVRMSRALTLLQITKWQVARIANEVGYDSPSRFTVR 250 Query: 248 FHNRFNITPREIRKASRE 265 F RF P +IR+ + Sbjct: 251 FKQRFGFLPSDIRENLSQ 268 >UniRef50_A6VTM5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM5_MARMS Length = 257 Score = 176 bits (447), Expect = 6e-43, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 2/256 (0%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 K+ ++ + + V L P+L +IR G+K + W+ L D + ++L G + Sbjct: 3 PAFKVSQMYGLQTQRLRNVAILTPSLFKIRSGRKRLFWQDDVLEFDASTLLLTKAGQQLT 62 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 EN P +L+ + + E ++ +N+ S N ++ + L Sbjct: 63 FENEPSKERFLSVQMSFLLPPAEGMIQM--SIKVAKNECSPRFKPNRSVMASLDFLLELD 120 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 ++ S Q + G L HLL S + LL P + ++VA Sbjct: 121 TQSVSETAQAYWLNGFYQQLAEVGKLHLLFEGHSVSFEQKITELLQQAPWQDYQLDQVAT 180 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 + +S +TL RRL E F+++L VR+N ALS +Q + +IA GY+ RF++ Sbjct: 181 HFSMSRATLIRRLKEENTQFRTLLTRVRMNYALSLMQQGYRQQMDIAVRCGYQSQERFSQ 240 Query: 247 RFHNRFNITPREIRKA 262 RF+ F ITP + K Sbjct: 241 RFYKSFGITPSQYIKT 256 >UniRef50_Q7MEL5 AraC-type DNA-binding domain-containing protein n=10 Tax=Vibrio RepID=Q7MEL5_VIBVY Length = 275 Score = 176 bits (446), Expect = 7e-43, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 122/271 (45%), Gaps = 6/271 (2%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWE-THTLTVDNNQIILF 59 M++ ++I + R L + QG + + T + + L+ Sbjct: 1 MVSYFMPTIEIIRFNHFAPRKQERYPVTKNGLFFVEQGSLTVTQDSGATSELTAGEFALY 60 Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP---QNPELI 116 G + P + A L I L++ F+ +Y ++ +T F Q+ + Sbjct: 61 NSGQLKEAQAQPGENGFSALALVFSITLLQKFRNVYPLSKIPAQQTDTFFKFSGQHKRID 120 Query: 117 YCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNH--VNHLLLSYSKQSLISRCYNLLLSE 174 + L V R +++ QEHLA+ ++ + + ++++ ++ S + + S Sbjct: 121 QLKDMLIEEVERKQNSQAQEHLALALMALMVEKQPELLNMIIRATQFSETQKIIQFIESN 180 Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 + + +A+++ +S +TL RRLA+E +SF +L R+++A + ++ T K I+ IA Sbjct: 181 IEEEISLETLAKHMGMSTATLKRRLAAEEMSFSQLLKIKRISHAATQLRVTDKSITTIAY 240 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKASRE 265 E+G+K + F+ F +TP+E R ++ Sbjct: 241 ESGFKSAAHFSTAFKAVQQMTPKEFRAKVQQ 271 >UniRef50_B6EKX1 HTH-type transcriptional regulator, AraC family n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKX1_ALISL Length = 259 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 101/255 (39%), Gaps = 10/255 (3%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 K + + ++ V + P + + G K I+ + + N IL + E Sbjct: 2 FKAFSYKAKEVQKLKDVVIINPCIIWVLSGMKNISLGRYKYNLKNGDAILLGANSKLNFE 61 Query: 69 NYPEAGLYLAEMLYL----PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 N P GL+ ++ + ++ + K + V+ K + L +L++ + + Sbjct: 62 NIPINGLFFSKQIIFFKPPKVEFFKQTVKNFEVSKYRNIKLDYQLKMTLDLLHQSDVILK 121 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 +++ + G+ L L + +L S+ S + Y +L + V Sbjct: 122 NIN------TRHMWLDGLYLLLAEEYYLQVLFLSSEGSFNEKVYEVLEKMQPSDHKIENV 175 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 L +S +TL RRL G F+ I+ VR+N AL +Q + +I+ GY+ Sbjct: 176 CSILGVSKATLIRRLKKAGTQFKKIVRQVRMNKALFLMQKRELLLEDISFSCGYQSVELL 235 Query: 245 TERFHNRFNITPREI 259 F F ITP+E Sbjct: 236 VVYFKEEFGITPKEY 250 >UniRef50_A4C5C3 AraC-type DNA-binding domain-containing protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C5C3_9GAMM Length = 275 Score = 173 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 7/256 (2%) Query: 8 NLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYI 67 L + V + P L + G K ++ LT Q + + Sbjct: 17 PLPYAVYSSVFEQRLLNVPIVKPMLIAVLSGDKQLD-GEQQLTCSAGQFVFLSNSPTTSM 75 Query: 68 ENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N P Y A ++ I E + +Q ++ F L C Q Sbjct: 76 RNIPIGSQYCALLIEFEISDFEGIK-----LNQTQSYGLCFGEICSRLSACLAQFVEWAH 130 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + ++ L +++ SL ++ + ++ ++ T + + Sbjct: 131 IA-PPAMWAMRRKEIVHLLFQLGHSNIAGLVHSHSLSNQIHLVIANDQELDVTIESLCQR 189 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 +S STL R+L +EG++ Q I D VRL L +Q+T K I IA GY+ SRF+ER Sbjct: 190 FAMSESTLRRKLKAEGITLQDIKDQVRLGQGLHLLQSTRKSIGMIANVCGYQSQSRFSER 249 Query: 248 FHNRFNITPREIRKAS 263 F RF +TP ++RK Sbjct: 250 FKYRFGLTPSQLRKTQ 265 >UniRef50_Q1ZVK9 Transcriptional regulatory, AraC-like protein n=2 Tax=Photobacterium RepID=Q1ZVK9_PHOAS Length = 259 Score = 173 bits (438), Expect = 7e-42, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 109/254 (42%), Gaps = 3/254 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 +K+ ++ + V + P++ I+QG K ++W+ + ++N +L Sbjct: 5 IKLNYYNGNQPQHLRNVPIIYPSIFWIQQGNKQLHWQNEWIPFNSNNWLLAHGHKSLTFI 64 Query: 69 NYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 N P + + L I + +++ D ++ + + Y W+ + T + Sbjct: 65 NNPNQTQFFSTQLSFLIRPTD--EQIQRSQDIQKDGLTPEYSLDGTAKYLWQSIITM-PK 121 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 +Q+H+ + L + H L S S + +P + V + Sbjct: 122 DIKPNVQKHIVNALFEHLANSGYLHQLFSMRNLSWRDKLTQYFNDDPKANHSIESVCDHF 181 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S STL RRL E F+ +L ++R+ ALS +QT E+A GYK +RF +RF Sbjct: 182 GLSKSTLIRRLKDENTQFRDVLAELRMGYALSLLQTKPYSQIELAHLCGYKSEARFAQRF 241 Query: 249 HNRFNITPREIRKA 262 ++F ++ ++ +K Sbjct: 242 QHQFGLSLKQYQKT 255 >UniRef50_B0TKQ1 Transcriptional regulator, AraC family n=5 Tax=Gammaproteobacteria RepID=B0TKQ1_SHEHH Length = 269 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 60/264 (22%), Positives = 103/264 (39%), Gaps = 8/264 (3%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 + ++I+ K + V P++ + G K + W+ TLT D N +L E Sbjct: 3 SLVQIDRFYGQKSQPLRNVPVYTPSIIAVTSGVKTLLWQGETLTFDRNHWLLASSAQELT 62 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKT--SFFLPQNPELIYCWEQLKT 124 N P + + L E K + L + L + + QL Sbjct: 63 FVNEPYQNRFQSVQLSFLSQPSERVLKQMAKPETTSTPLLSPPTLTVSDSLNFAFTQLVA 122 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 + S +Q+ L L V L +L + L ++P T Sbjct: 123 MSEQRLSPAVQQCYLDAFYLHLNELGVLSKLFESDVLTLREKVSRYLSADPSASHTIELT 182 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV------KPISEIARENGY 238 + +S +TL RRL EG SF+ IL VR+ +A+ +Q+ E+A GY Sbjct: 183 CSHFAMSQATLIRRLNKEGSSFRVILAGVRMLHAIGIVQSLSARNGVPLSQLELAIRCGY 242 Query: 239 KCPSRFTERFHNRFNITPREIRKA 262 + +RF++RF ++F I+ ++ K Sbjct: 243 QSEARFSQRFKSQFGISLKQYMKT 266 >UniRef50_Q21KL2 Transcriptional regulator, AraC family n=5 Tax=Proteobacteria RepID=Q21KL2_SACD2 Length = 270 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 5/259 (1%) Query: 5 GKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYE 64 T L K I V + P L + G K + + N + + G + Sbjct: 14 ENTALPFAVYTSLKEQTILNVPIVKPLLVFVLDGCKKLGANGD-VRCVNGRFVFLSNGTK 72 Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 + N E+ Y A ++ F L+ I F P L +Q Sbjct: 73 IDMRNIAESDEYFALLIEFD---YTDFNCLHQKAVNINAAPYFLGEITPLLEGTLQQFIE 129 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 + ++ +L +L + SL ++ + ++ ++ WT + + Sbjct: 130 WAAIA-PAELWHIRRQELLQTLFHLGYTQVCSIAGAPSLSAKVHAIISTDLTYDWTMDVI 188 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 + L +S ST+ R+L +EG S Q++ D RL+ L +Q+T +PI+ IA + GY SRF Sbjct: 189 TQKLAMSESTIRRKLTAEGTSLQAVKDSARLSFGLHQVQSTFQPINHIAEQCGYLSQSRF 248 Query: 245 TERFHNRFNITPREIRKAS 263 T +F F +TP +RK Sbjct: 249 TNKFKQLFGVTPTALRKTR 267 >UniRef50_B5ZYE2 Transcriptional regulator, AraC family n=12 Tax=Rhizobium RepID=B5ZYE2_RHILW Length = 284 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 108/250 (43%), Gaps = 5/250 (2%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 IR +R+ P L +++ G K+I L ++ L P +EN P+A Sbjct: 14 IRQGGRACFYRLVNTSPILFQVQSGTKIIMANDRPLRLEAGAYGLLPDYQPLTMENIPKA 73 Query: 74 GL-YLAEMLYLPIDLIE-SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS-VSRGF 130 Y L +P L E ++ ++ ++ R + E ++ Sbjct: 74 PRNYQTVALPVPRQLFEDAYARMGSIAVPSRPLPASASSLPEEAAVLFDYCCQPGNLARL 133 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 I + M ++ + +L L R ++ S+P WT AR + Sbjct: 134 PGAIAKARLMELVTWFAL--CGAVLGEGQSPRLEDRLRQMIESDPAFDWTLAHAARSFNM 191 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S +TL RRLA+E F IL D R+N AL I TT P++++A E GY PS+F+ RF Sbjct: 192 SEATLRRRLAAENTGFSEILSDTRMNRALGLIHTTTLPMAQVALEVGYDSPSQFSARFKE 251 Query: 251 RFNITPREIR 260 RF ++PR +R Sbjct: 252 RFGVSPRHVR 261 >UniRef50_Q2S8T9 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S8T9_HAHCH Length = 278 Score = 170 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 61/253 (24%), Positives = 112/253 (44%), Gaps = 5/253 (1%) Query: 10 KIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIEN 69 I I + P +++GKK + + + + G ++N Sbjct: 19 TTASILTRNDLFIGKFVTDYPTFILVKRGKKTLYSGERRVALLPGDAVAIAAGAACDVQN 78 Query: 70 YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV--S 127 + GL+ A+ + ++I + + ++++ S E +E+ ++ Sbjct: 79 ETDEGLFEADWIVCARNIICGIEPRFPKHKKVQSIVSLQG-LGKEFALTFERGLQAIKEP 137 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + + EH +L L + S + + + L+ +EP KW++ +A Sbjct: 138 QATPDLVAEHRVCELLQWLANAGY--VFRSNERADIQRKVRLLIGAEPDKKWSSQDIAES 195 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L +S +TL R+LA EG +F IL DVR++ ALS +Q+T I+ IA + GY+ SRF+ R Sbjct: 196 LALSEATLRRKLAKEGNAFSEILVDVRMSLALSLLQSTDAAIASIAYQVGYESASRFSVR 255 Query: 248 FHNRFNITPREIR 260 F RF +P IR Sbjct: 256 FKQRFGFSPTAIR 268 >UniRef50_B6RAA0 Transcriptional regulator, AraC family n=4 Tax=Alphaproteobacteria RepID=B6RAA0_9RHOB Length = 263 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 4/257 (1%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETH-TLTVDNNQIILFPCGYE 64 + L I I + L I +G K + + L + +FP G Sbjct: 5 DSGLSIHLITQATRATFTDMYFHQTFLSFIHKGTKKVICPHNGELIGSEGDLFIFPPGSI 64 Query: 65 FYIENYP-EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLK 123 +EN P Y A+ + + LI++ ++ + Sbjct: 65 ISLENRPLVDADYQADGVSIANTLIDAVYAGQPAAPAATGIQVVRGKEHKPEDVLALMKE 124 Query: 124 TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANK 183 T + +++H + L+ L H+ L + +S+ +L+ ++ W A Sbjct: 125 TLANTSLPEALRQHRLLEPLIWL--RHIGVNLSKPDTDNPLSKVRSLIETDLSYAWRATD 182 Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA + +S +T R LA G F +L RL L+ +Q+T +PIS IA + G+ PS Sbjct: 183 VASHFAMSEATFRRWLAKSGHGFAKVLLHTRLEKGLTLLQSTHEPISNIALDCGFNTPSH 242 Query: 244 FTERFHNRFNITPREIR 260 F+E F RF I P+EIR Sbjct: 243 FSEAFKKRFGIRPKEIR 259 >UniRef50_C9NYZ8 Transcriptional regulator AraC/XylS family n=8 Tax=Vibrio RepID=C9NYZ8_9VIBR Length = 261 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 2/256 (0%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 +I E R + V P++ +I G K + W+ ++T+ + +IL + Sbjct: 3 HQFQITEFRAQHLQALRNVTIHSPSIIQILSGNKRLFWQEESVTLTPDSLILCSAASSWN 62 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 N P+ G +L+ + + + S + L + + + + + + L T Sbjct: 63 FANLPQKGPFLSRVFSF--NYLPSQEMLGLSENAAHSSSPSYCLVDKPIRDTLNTLATVN 120 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 + S + Q++ M + L H + S S+ SL L P + + VA Sbjct: 121 LKAISPRTQQYWLMPLYQQLAEQGALHKIFSSSQASLTQTITQYLSIAPADEHSLEGVAD 180 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 + +S +TL R+L EG ++ +L VRL++AL +Q ++A+ GY+ RF + Sbjct: 181 HFGMSRATLIRKLKQEGSQYRQLLAQVRLSHALQLMQKHQYDGYQLAQMCGYQSEERFRQ 240 Query: 247 RFHNRFNITPREIRKA 262 RF RF +TPRE ++ Sbjct: 241 RFRERFGVTPREYQRT 256 >UniRef50_D0MC89 Putative AraC-type regulatory protein n=3 Tax=Vibrio RepID=D0MC89_VIBSE Length = 269 Score = 167 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 6/263 (2%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINW-ETHTLTVDNNQIILFPCGYE 64 N++I + R L + +G +++ + L+ Sbjct: 1 MPNIEIIRFNHFTARKSERYTATHNGLYVVEEGALLVHQPNGEQFELKAGDFTLYNSADL 60 Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVT---DQIRNKTSFFLPQNPELIYCWEQ 121 E P + A L +L F+K + + + R F + E+ + Sbjct: 61 SSAEAIPSEKGFKALALVFNPNLFCDFKKAHPMLRSKTEERRFYPFSAQASSEVAQLKDT 120 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLI--SRCYNLLLSEPGTKW 179 L SR Q H+AM +L + N L + SL + + + Sbjct: 121 LVNLASRNAPDYTQGHIAMALLSLMVEVEPNILSIIDDASSLSDSQKAIKYIENNIEKDI 180 Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 T +A ++ +S++TL RRLA+E +SF IL R+N A + ++ + K I+EIA E+G+K Sbjct: 181 TLEGLAAHMSMSIATLKRRLAAEDLSFSQILKVKRINFAATQLRMSEKSITEIAFESGFK 240 Query: 240 CPSRFTERFHNRFNITPREIRKA 262 + F+ F + +N+TP++ R Sbjct: 241 SAAHFSTAFKSVYNMTPKDFRNQ 263 >UniRef50_C6CEQ2 Transcriptional regulator, AraC family n=2 Tax=Dickeya RepID=C6CEQ2_DICZE Length = 282 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 55/255 (21%), Positives = 109/255 (42%), Gaps = 3/255 (1%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L +I + + V + + G K + + ++ + P G ++ + Sbjct: 27 LLTHQIIARNQYVLRTVVMHADLIGLVVSGTKQLLAPQGRSDFASGELFILPRGTQWDVV 86 Query: 69 NYPE-AGLYLAEMLYLPIDLIESFQKLYT--VTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 N P G Y+A+++ L + I F + + + + + + + + Sbjct: 87 NDPAPQGRYVAQVINLQPETITRFYQSFGQFAALEPVRSAARVAETPASIKTAFLRAADA 146 Query: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 +S + + +L L H +L + R L+ P W+A++VA Sbjct: 147 LSDANCSTTLSEHRVLEVLLLLAEHAGVVLAPPGALNWSERVRRLVAQRPYDHWSASRVA 206 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 + L + STL+RRLA EG + + + D RL A+ +Q++ +P++ IA + GY+ S+FT Sbjct: 207 QALSTTASTLNRRLAQEGCTITTCVRDTRLETAMVLLQSSERPVAAIALDVGYESHSKFT 266 Query: 246 ERFHNRFNITPREIR 260 F RF + P +R Sbjct: 267 AAFRRRFGVVPSALR 281 >UniRef50_D0YX71 Transcriptional regulator AraC family protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YX71_LISDA Length = 321 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 114/279 (40%), Gaps = 14/279 (5%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 + R +K + I H + + ++ G + ++T+ +N ++ P Sbjct: 22 ITTRSSFGMKYKRILSQSHIVLKEFYVDHHLIVNLKNGDGDVCINGQSVTISSNATLVIP 81 Query: 61 CGYEFYIENYPEAGL--YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQ------N 112 + ++L + + I K Q T+ +P Sbjct: 82 KFSHISCTINQKDCHKNIELQLLMVGEETIAQSFKYMASLKQPNTPTANCMPVYHLNETP 141 Query: 113 PELIYCWEQLKTSVSRGFSTKIQEHLAMG----VLLSLGVNHVNHL-LLSYSKQSLISR- 166 + ++ + S+ T++++ +LL+L ++ + ++ R Sbjct: 142 DVVEQNFQLFQQSLPAVADTRLEKTFLTQSLFFILLALNEAGIDVFNVYRFNYDEPKERT 201 Query: 167 CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 L+ +P KW+ + +A+ L+ + STL R LA EGVSF +L DVR+ AL+ + + Sbjct: 202 IARLITQDPQRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSN 261 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 IS+I +G+ + F + F ++ ITP + R SRE Sbjct: 262 YSISQIGHRSGFGSAAYFCDAFKRKYGITPSQFRATSRE 300 >UniRef50_Q7CUB1 Transcriptional regulator, AraC family n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CUB1_AGRT5 Length = 246 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 8/245 (3%) Query: 27 PLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA--GLYLAEMLYLP 84 L + +G+K + W + P G E + N P+A G+Y A + Sbjct: 1 MPAAGLVIVIEGRKEVLWGAECNIYHAGDAFVLPAGAEVDVVNEPDADTGVYRALFVRFS 60 Query: 85 IDLIESFQKLYTV----TDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 L+ +L+ + + + +I+ E L + + S ++ +H + Sbjct: 61 RALVIEAARLWPQLIVREVPLGSSITISPTLCSAIIHSGEVLAGPLDQ--SRRVVDHRLL 118 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 VLL L L+ Y S+ L+ W+ VA L +S +TL RRL Sbjct: 119 EVLLILAEQGALPLMPKYVDGSVTEAVRLLIRHRLDHAWSTAAVAASLSMSEATLRRRLR 178 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 E S +++L R+ A + ++E GY S F+ RF + F P +R Sbjct: 179 DENQSLRALLLAERMQAAYLILSDRDADVAEAIAATGYASRSHFSRRFQDAFGQAPSTVR 238 Query: 261 KASRE 265 +A ++ Sbjct: 239 RARKK 243 >UniRef50_A1U2J4 Transcriptional regulator, AraC family n=3 Tax=Marinobacter RepID=A1U2J4_MARAV Length = 306 Score = 160 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 5/264 (1%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 L R L R H +HR L GK +N TV ++L P Sbjct: 46 LTRELYPLAFGHYRRAAGHHMHREHHRDNLLIYCTDGKAFLNVAGEPYTVTAGDLLLLPA 105 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 G P+ + ++ L E F + D R + L + P L+ + Sbjct: 106 GVSHRYTADPDN-PWTIHWVHYTGPLAEDFGQYMGFDDSTRIR---HLGRQPRLLVDFNG 161 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 L + GF + H + + L +N S ++Q+ + ++ + + T Sbjct: 162 LLSVRQTGFRARGLIHASNRLRQLLAAVPINADETSQARQAELDSLHSFMREHLEERLTL 221 Query: 182 NKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 N++A +S + R + G S +++ A + TT + ++I+R+ GY Sbjct: 222 NQLAELSGLSPAHFATRYREQTGTSPIQHFLHLKVERACELLDTTSQSFADISRQLGYDD 281 Query: 241 PSRFTERFHNRFNITPREIRKASR 264 F+ F +P + R +R Sbjct: 282 AYYFSRLFKKVMGKSPTDYRHTAR 305 >UniRef50_Q2BYZ8 Transcriptional regulator, AraC family protein n=6 Tax=Vibrionaceae RepID=Q2BYZ8_9GAMM Length = 293 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 107/270 (39%), Gaps = 13/270 (4%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY-- 66 +K + I H + + ++ + ++ H + + NN + P Sbjct: 1 MKYKRILSQSHVVLKEFYVDHHLIVKLSNVQGDVHINGHAIELKNNSTFVVPKFSHISCS 60 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLY-----TVTDQIRNKTSFFLPQNPELIYCWEQ 121 I ++L + + I K + +P + + Sbjct: 61 INQLNNQENIELQLLMIDEESITEAFKYISALKQPTFPTASCSPVYTIPTPAIVDQNFVL 120 Query: 122 LKTSVSRGFSTKIQEHLAMG----VLLSLGVNHVNHL-LLSYSKQSLISR-CYNLLLSEP 175 + + +++ L +L++L ++ + ++ R L+ +P Sbjct: 121 FNKLLPSICGSSMEKTLLSQCLVFILMALNEAGIDVFNVYRFNYDEPKERTIARLITQDP 180 Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 KW+ + +A+ L+ + STL R LA EGVSF +L DVR+ AL+ + + IS+I+ Sbjct: 181 QRKWSVDDMAKALFTTQSTLRRHLAKEGVSFSQLLLDVRMGLALNYLTFSNYSISQISNR 240 Query: 236 NGYKCPSRFTERFHNRFNITPREIRKASRE 265 +G+ + F + F ++ ITP + R SR+ Sbjct: 241 SGFGSAAYFCDAFKRKYGITPSQFRTTSRQ 270 >UniRef50_Q5E051 Transcriptional regulator, AraC family n=1 Tax=Vibrio fischeri ES114 RepID=Q5E051_VIBF1 Length = 255 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 102/255 (40%), Gaps = 6/255 (2%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 K + ++ V P + I G K I+ + + T+ ++ I + E Sbjct: 2 FKAFTYEGNNVQKLKNVVITNPCIIWIVCGVKNISVDGYKYTLKKDEAIFLSGNSKISFE 61 Query: 69 NYPEAGLYLAEMLYL-PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS 127 N+ E G ++++ + IES +K + R+ + + +L E L + S Sbjct: 62 NFTEDGFFISKQITFIRKPNIESVRKNKFELSKYRS-----VKLDSQLKMTMEFLHQADS 116 Query: 128 RGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 + K + G+ L L +L + S + Y +L + + Sbjct: 117 ILNNIKTRSMWLDGLYLLLLDYDYLEMLFRPDEISFNEKVYEILDKMDPKEHRIESICLV 176 Query: 188 LYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTER 247 L IS +TL RRL G F+ I+ VR+N AL IQ P+ EI+ GY+ F Sbjct: 177 LNISKATLIRRLKKSGTQFKKIVRQVRMNKALFLIQKRTIPLDEISFSCGYQSMELFNLY 236 Query: 248 FHNRFNITPREIRKA 262 F + F I+P+ K Sbjct: 237 FESEFGISPKNYIKT 251 >UniRef50_C7PKQ0 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PKQ0_CHIPD Length = 293 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 97/277 (35%), Gaps = 21/277 (7%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGY 63 R + + I + + +RV + + +G+K + + T TV++N I+ G Sbjct: 16 RAEDRILIRPYTSPCNTKKNRVILHRNMINLLIEGRKTVIYGGQTTTVNDNAILFLAAGS 75 Query: 64 EFYIENYPEAGLYLAEMLYLPIDLIESFQ-------------KLYTVTDQIRNKTSFFLP 110 + G + + +LY D + F K I + FL Sbjct: 76 CLTTNVKSDNGNFQSVLLYFSDDALLDFYMKYDRLVQAQQQDKQLPAASFITFEKDVFLR 135 Query: 111 QNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR---C 167 E + QL + + +I +LL L LL + + + Sbjct: 136 NYIESVRHLLQLGQPLPQ----EICILKFEELLLYLLQTAPETLLQLKANATGSMQDFEI 191 Query: 168 YNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTV 226 + T ++A +S+ST RR G S Q L + ++ A + Sbjct: 192 RKAVEGNITRPVTVEELAFLCSMSLSTFKRRFTKIYGTSPQRWLLEQKMQVAARLLLDQQ 251 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 ++ + GY+ S FT+ F F +TP ++ + Sbjct: 252 AKPGDVYDQVGYESHSSFTKAFRQVFGMTPSAYQEQN 288 >UniRef50_D1E8F4 AraC protein n=21 Tax=Neisseria RepID=D1E8F4_NEIGO Length = 239 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 6/226 (2%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE- 72 I H V P + +R+G K + W L + + + G + N P+ Sbjct: 18 IVQHHTALYRSVAVYEPTVVIVRRGCKKLRWAGRELRIAAGEAVGLAGGQTLDVINIPDS 77 Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-FS 131 GLY A+ + + +E F Y + + LP + ++ ++ Sbjct: 78 DGLYQAQWIAFEQETVERFAAQYGTAQAVCDAVK--LPHPGRMGAAFDYAAAVLADEEVP 135 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 E GVL L H Y +L+ + L+ ++ W++ +A+ L S Sbjct: 136 HNAAEAALCGVLAWL--QHDGIGFAVYGGVNLMRQIRKLITADMAADWSSAMLAQRLNCS 193 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 + L RRLA + +F+++L DVR+ AL+ +Q T +++IA G Sbjct: 194 EAALRRRLARQDTNFRTLLTDVRMMRALTLLQVTQWSVAQIAGAVG 239 >UniRef50_B5ETV0 AraC-type DNA-binding domain-containing protein n=3 Tax=Aliivibrio RepID=B5ETV0_VIBFM Length = 266 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 110/266 (41%), Gaps = 9/266 (3%) Query: 6 KTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHT---LTVDNNQIILFPCG 62 + +++ E H + R + + G ++ + +T++ +L+ G Sbjct: 2 MSPVQLHEFNTHTRRKSDRYPVERNGIFIVTSG--QFHYRDRSGDDITLNAGDFLLYSSG 59 Query: 63 YEFYIENYPEAGLYLAEMLYLPIDLIESFQKL--YTVTDQIRNKTSFFLPQNPELIYCWE 120 I+ + + A+ + + + L + F + T F Q+ ++ E Sbjct: 60 DISKIKMTNDNNNFKAQSVVIDVALFQKFLSYSNAPAHSPCNSDTFIFTAQDTSVVKLLE 119 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNH--VNHLLLSYSKQSLISRCYNLLLSEPGTK 178 LK ++ + E L + +L + + + S + + + Sbjct: 120 LLKEQLTNNDNNDTLEFLTLALLSEMVNKQPCLIPFIQKISVLTTSQQLIRYVEEHISAD 179 Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 T + VA L +S STL R+L S+ +SF ++ R+N A + ++ T K I+EIA + G+ Sbjct: 180 LTIDMVAPKLGMSASTLKRKLQSDKLSFAHLVKVKRINYAATQLRLTRKTITEIAYDTGF 239 Query: 239 KCPSRFTERFHNRFNITPREIRKASR 264 K + F+ F + ITP+E R + + Sbjct: 240 KTAAHFSTSFKSVKGITPKEFRDSLQ 265 >UniRef50_B4SIX4 Transcriptional regulator, AraC family n=3 Tax=Xanthomonadaceae RepID=B4SIX4_STRM5 Length = 274 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 5/250 (2%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 I + H V+ P + +G+K + +L I+L + N Sbjct: 27 YACITARREHGASSVEIPQPQFAILLEGRKQVRTAHQSLEFVPGDILLLTQRCRIDVVNT 86 Query: 71 PEAG--LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 P+ G YL+ ++ L +++ + + L++ LP E Q + S+ Sbjct: 87 PDPGTGRYLSAIVPLCAEVLAAARTLWSEALPSAGPVMGRLPLT-EHGAVLRQWRQSLQD 145 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 G + + LA VL H N LL SL + + + +EP W + V Sbjct: 146 GRYSDARLALASLVLTLCRQGHGNLLL--PQAPSLGEQIRDRIAAEPARDWQSRDVEEQF 203 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +S +TL RRLA+E S + +L + RL + ++ + TT P+ +A GY+ + F++RF Sbjct: 204 ALSGATLRRRLAAERTSLRQLLTEARLAHGMTLLYTTDLPLKTVAARAGYRSAASFSKRF 263 Query: 249 HNRFNITPRE 258 ++ + P + Sbjct: 264 AEQYGLAPTD 273 >UniRef50_B4X5H8 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X5H8_9GAMM Length = 358 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 4/194 (2%) Query: 74 GLYLAEMLYLPIDLIESFQKLYTVT---DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF 130 ++ A ++ + +E+ + V+ ++ I+ V Sbjct: 161 EIFFATLVTFAREAVETALRPLHVSFHTPPPEQGAAYLEDFFGCDIHFNADCNVVVFDRE 220 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLY 189 + +L ++ L + L +R + + T +A L Sbjct: 221 QAAQKLLTHNMMLTQSHEKMLDEYLSRVDQNDLANRVKCRIQDKLALGSPTQADIASTLG 280 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S+ L R+L+ +G SF+ IL+ R AL I+ + EIA G+ + F F Sbjct: 281 MSLRNLQRKLSEQGTSFKDILEQTRRKLALEYIEQRHLTLGEIAYLVGFSSAANFNRAFK 340 Query: 250 NRFNITPREIRKAS 263 ++P E R + Sbjct: 341 RWTGVSPGEFRVSH 354 >UniRef50_Q00753 Msm operon regulatory protein n=8 Tax=Streptococcus RepID=MSMR_STRMU Length = 278 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 90/236 (38%), Gaps = 5/236 (2%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESF 91 + I +GK + HTL + I L P + + + + + E+ Sbjct: 43 IHFILEGKGKLTINQHTLDLAAGDIFLLPKDISTFYQADLQ-MPWSYIWIGFSGSKAENI 101 Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 K ++ + + +++ + T + + + +L +L Sbjct: 102 LKQSSLFKRFYCHSGRSSKLFSQMMTIIQFANTPL-TSVNELLMVGELYKLLAALIEEFP 160 Query: 152 NHLLLSYSKQS--LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL-ASEGVSFQS 208 L + + +++ ++ S+ G+ N +A+ L +S S L++ S +S + Sbjct: 161 LSHLEESNSSTKAYVNQVKKIIHSQYGSSLRVNDIAKKLNLSRSYLYKIFRKSTNLSIKE 220 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + VR+ + ++ I+EI+ G+ F++ F N F +P + RK + Sbjct: 221 YILQVRMKRSQYLLENPKLSIAEISNSVGFSDSLAFSKAFKNYFGKSPSKFRKEIQ 276 >UniRef50_Q0VSF4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VSF4_ALCBS Length = 338 Score = 153 bits (386), Expect = 7e-36, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 82/219 (37%), Gaps = 5/219 (2%) Query: 43 NWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIR 102 + + N+++ +E+ + ++ E L ++I + Y D Sbjct: 123 FTDGDMAVMQINELLALGELAPLIMESLFSSFHFMGEKLVPGQEVIGELRFSYPEPDYF- 181 Query: 103 NKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYS-KQ 161 + +P + Q++ V R K A L + + + + Sbjct: 182 ARLRPVMPVPVYFDCAYNQMRFPVER---MKYTLQFADPRLARMAADQCEQEMATIKLPP 238 Query: 162 SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 L+ + ++L G +VA L++S TL R+L G S+Q +LD +R A+ Sbjct: 239 PLLGQVRRIILGGGGRFPGVEEVAGELHMSSRTLKRKLQQLGTSYQEVLDGLRKGLAVEY 298 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 + + K + EIA GY S F F +P + R Sbjct: 299 LTQSEKTVDEIAMTLGYSDASNFARAFRRWTARSPSDYR 337 >UniRef50_A4XTI6 Transcriptional regulator, AraC family n=6 Tax=Pseudomonas aeruginosa group RepID=A4XTI6_PSEMY Length = 360 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 39 KKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPI------DLIESFQ 92 + +N + ++ + L P ++F ++ L + L +L ++ Sbjct: 139 RISLNLKDGVASLHFDDSALPPALHDFIVQRDMLGALVVVRELLGSPLPIRSVELRQATP 198 Query: 93 KLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVN 152 T + + F Q+ L + + L + R S L+S Sbjct: 199 SDMTPFVEAFGQVPHFGAQHNRLGFSADLLDDPLPRANSQ----------LVSACERQCQ 248 Query: 153 HLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 LL + Q + R LLL PG +VA L++S TL RRL EG SF+++ D Sbjct: 249 MLLARHQWHQGVAGRVRQLLLQTPGQMADMEQVASRLHLSSRTLRRRLIEEGSSFRALQD 308 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +VR A + + EIA GY S F F TP ++ + Sbjct: 309 EVREALADELLAAGGLSLEEIAERLGYGELSNFIHAFKRWKGTTPGRYQRGA 360 >UniRef50_B7GX20 Bacterial regulatory helix-turn-helix protein, AraC family protein n=8 Tax=Acinetobacter RepID=B7GX20_ACIB3 Length = 356 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 32/272 (11%) Query: 3 ARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQII----L 58 G R I +K P L KK + II L Sbjct: 102 VYGYALYSSRNFRQAVELGIRHIKLAGPIL------KKSFYIRDDVAIFEGQDIIALGKL 155 Query: 59 FPCGYEFYIENYPE------AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQN 112 P EF+ + G + A+ L LP +++ + F Sbjct: 156 LPLVCEFWFSSMQTLTERVLEGPFQAKKLLLP----YPAPDYAEEYEKVFHCPVQFNAGV 211 Query: 113 PELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL--LSYSKQSLISRCYNL 170 + + + L + + + +L + L+ + Sbjct: 212 MQWHFDLKWLDVPCPNANP----------ITADMCKSFCERMLGAAELEEPELVKTIRLI 261 Query: 171 LLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 LL G +A ++A L++S TLHRRLA +++Q +LD+ R A ++ T + Sbjct: 262 LLDGTGLFPSAQEMAERLHMSKRTLHRRLAGFDLTYQELLDETRRRLADEYLRETTLTVD 321 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKA 262 EIA G+ S F + + + I+P E R Sbjct: 322 EIAERIGFSDTSNFRKAYRHWTGISPNEYRIQ 353 >UniRef50_B5JTW9 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JTW9_9GAMM Length = 350 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 94/273 (34%), Gaps = 24/273 (8%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 H V + Q + + + + + ++ F I P Sbjct: 80 YGRRLSFSTHGVLGFAAQISETLQDAAEMVVQFNKTRAEFDDMVFFTNDEWGCIRMQPPD 139 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 Y+ E + ++ +F L + ++ L + ++ + Q + + G S Sbjct: 140 EGYVDERIG-RFHVLSAFSNLEQLARRLTGSLEKSL--DTRMLITFPQPSSRLPEGLSPG 196 Query: 134 IQEHL--------------------AMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLL 172 + H A L+S + L+ + + + + Sbjct: 197 LSLHFDQVVNELRFPIEMMRQPLPKANPELVSAAQEQMEAELVRLNVRNDVAGMVRLQIQ 256 Query: 173 SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEI 232 G T +VA L++S TL RRL + G S+Q I D R A+ ++ T + I Sbjct: 257 DWEGRLPTLEQVAEQLHMSPRTLKRRLQTAGTSYQQIKDSSRFRRAIHQLEATDSSLESI 316 Query: 233 ARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 A GY S FT+ F + +TP E R+ + Sbjct: 317 AELLGYSDASNFTKAFKSWAEMTPSEFRQRLSQ 349 >UniRef50_C9NYS3 Transcriptional regulator AraC family n=9 Tax=Vibrionales RepID=C9NYS3_9VIBR Length = 349 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 15/194 (7%) Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 + + +L P E + +++ F Q E + QL + Sbjct: 163 QQPFPSHVLKFPYPKPE----YGDLYNELFRCQIEFDSQELEWEFDASQLHNPLPS---- 214 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLS-YSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 A + L + + + +L S +L + + + PG + ++ L +S Sbjct: 215 ------ANAMTLQMCLKSCDEMLAKVSSTPNLKEKITQIFIERPGRYPSIEALSSELGMS 268 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 TL R L +E +Q ILD VR + A + +T I EI+ G+ + F F Sbjct: 269 SRTLRRHLKAEQTGYQQILDHVRFHLAKYYLVSTGLNIEEISERVGFSDSANFRHAFRKW 328 Query: 252 FNITPREIRKASRE 265 +P+ R + + Sbjct: 329 NGCSPKAFRNQAAD 342 >UniRef50_C6W363 Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W363_DYAFD Length = 290 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 10/267 (3%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 + I + +R+ + + G K I + T V ++++ G Sbjct: 19 DEVVIRFYNSDRDSVKNRIVLNQNMINVLVSGTKTIIYPDATAVVQAGELVVLSTGNVLT 78 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYT-----VTDQIRNKTSFFLPQNPELIYCWEQ 121 E L+ + + Y ++ F Y T + Q+ + + Sbjct: 79 SELLAGRDLFTSVLFYFSNEVFNRFLIKYEHLIKGNTPTASRQPFLIFKQDSFISHFITS 138 Query: 122 LKTSVSRG--FSTKIQEHLAMGVLLSL--GVNHVNHLLLSYSKQSLISRCYNLLLSEPGT 177 L + +S G ++++ +LL + H + ++ + ++ S+ G Sbjct: 139 LMSLLSNGGKLPAEVRQLRIEELLLYMLHADPQKFHSIQIITRDKQQLQIKKVVESQIGK 198 Query: 178 KWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 T + +A ++S ST R+ S Q L RL A +++ + S I + Sbjct: 199 PTTVDDLAFLCHMSTSTFKRKFNEIYQTSPQKWLLAKRLELAADLLRSYDESPSGIYMKV 258 Query: 237 GYKCPSRFTERFHNRFNITPREIRKAS 263 GY+ S F+E F N F TP + ++ Sbjct: 259 GYQNHSSFSEAFRNHFGSTPSDYQQMH 285 >UniRef50_D2QK57 Transcriptional regulator, AraC family n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QK57_9SPHI Length = 344 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 81/226 (35%), Gaps = 12/226 (5%) Query: 36 RQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLY 95 + G K + +L + + II E E +Y++ + L + + + + Sbjct: 126 KSGAKYVL----SLRITSPDIIY----PEHTF--NSELSIYMSVIRALTGQRLTALETHF 175 Query: 96 TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL 155 + + +P L+ T V A L L H N +L Sbjct: 176 -AYPRPSDTREHERVFDPTLLLFDASETTLVFDAALLDTPVLNANPSLFPLFEKHANDIL 234 Query: 156 LSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 SL SR ++S G + T VA L + V TL L G S+Q +LD+ R Sbjct: 235 NQLHTPSLKSRVKAEIVSLMKGEEPTLVSVADRLAMGVRTLQLHLKESGTSYQQLLDETR 294 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 A+ ++ ++IA G+ PS F F TP R Sbjct: 295 KELAIGHLREPNVSTTDIAYLLGFAEPSVFFRSFKKWTGQTPGAYR 340 >UniRef50_Q2BQ54 Transcriptional regulator, AraC family protein n=2 Tax=Oceanospirillaceae RepID=Q2BQ54_9GAMM Length = 304 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 92/264 (34%), Gaps = 5/264 (1%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 L++G L + R H++ R + L G+ + + + I+L P Sbjct: 31 LSQGLYPLGMGYYRQASGHQMERQEHDDNLLIYCLDGEGEAVIDGQKTRIRSGDILLIPK 90 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 G + + + ++ E F + + + + + + L +E Sbjct: 91 GVSHTYQAR-KRKPWTIYWVHFHGHHAEDFAQHLQQRESNQRRYVMPIGIHSRLASDFEA 149 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS---LISRCYNLLLSEPGTK 178 L + ++ A + L + L + I R ++L+ + + Sbjct: 150 LLEARESTYNLNAYICAANQLRQILSHIALLQPLAKQKQSRGGLDIERVHSLMQTHIHEQ 209 Query: 179 WTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 + +A + +S ++ G + + +++ A + TT I+E+A G Sbjct: 210 LDLDTLAESISLSKYHFVKKYKEVTGTTPINHFIQLKIERACHLLDTTNNGINEVAFAVG 269 Query: 238 YKCPSRFTERFHNRFNITPREIRK 261 Y+ F+ F ++P + RK Sbjct: 270 YEDAYYFSRIFKKLMGVSPSQYRK 293 >UniRef50_B7S017 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S017_9GAMM Length = 343 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 11/188 (5%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 + + ++L + ++ F ++ +L + + L +S Sbjct: 163 SRHWFSRVELNYKAPPYRAMYSEVLGDPVLFEREHNQLSFPADLLDQPLS---------- 212 Query: 138 LAMGVLLSLGVNHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 A L LL + +L ++PG +VAR L + TL Sbjct: 213 FANEAAAQLCEQQCAALLGELKRTDGIEGEVRRILANQPGKYPGIIEVARALAMGERTLR 272 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRLA E +++ ++ + R+ A S ++ I EIA GY PS F F+ +TP Sbjct: 273 RRLADEDTTYKQVVLEFRMELAASYLRGNAMSIQEIAYVTGYADPSNFHRTFNKHQGLTP 332 Query: 257 REIRKASR 264 R+ + Sbjct: 333 NAYRRLHQ 340 >UniRef50_B1JCK3 Transcriptional regulator, AraC family n=16 Tax=Pseudomonas RepID=B1JCK3_PSEPW Length = 353 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 2/172 (1%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 +++ Q +N + + + L++ V + A + L Sbjct: 162 RRVLIQGPQPKNVEPYKVAFHSPLVFGAPH-DALVFERADMEAALPTANEAMAILHDRFA 220 Query: 152 NHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 L +S+ + R +L P + +A+ L++S TL RRL EG SFQ++L Sbjct: 221 GEYLARFSESRVTHRVRQVLCRILPQGEPKRETLAQALHLSQRTLQRRLQEEGTSFQALL 280 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 DD R A + + E A G+ PS F F F++TP E R Sbjct: 281 DDTRRELAEQYLAQPGMTLLETAYLLGFADPSNFYRAFRRWFDVTPSEYRAR 332 >UniRef50_B1Q2A8 Transcriptional activator for nphA1A2 n=4 Tax=Nocardiaceae RepID=B1Q2A8_9NOCA Length = 335 Score = 149 bits (377), Expect = 9e-35, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 92/270 (34%), Gaps = 13/270 (4%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLM------PALCRIRQGKKVINWETHTLTVDNNQII 57 R +L + IR H + + +C + G + V+ Sbjct: 64 RPFGDLHVSTIRADAHTVVRSPAMIQSDSGEGYLVCLVTDGSVEVRQSGRATVVEPGSFA 123 Query: 58 LFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQK---LYTVTDQIRNKTSFFLPQNPE 114 L C F + + ++ P +++ S + T + + + Sbjct: 124 LLDCAAPFVFHS---PAPFRQVVVRSPREVLTSRLPGRIVEHGTARSIHGDTGAGGLVGR 180 Query: 115 LIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE 174 L + +S+G + + +L + + ++R ++ Sbjct: 181 LFVDIADMDAPMSQGAAVSFASSAVDMLATALTEGLLATSAADLHRTEDLTRVQRVIEQN 240 Query: 175 PGT-KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 T + +A +S+ T+H+ +EG + ++ L RL A + TT +++++ Sbjct: 241 LHDADITLSDIAAAAGMSLRTVHKLFNAEGTTTRAWLYQARLEAARRYLLTTDLSVADVS 300 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRKAS 263 G++ S F+ F + F +P RK Sbjct: 301 ECAGFRDVSHFSRLFRSTFGSSPGLYRKEH 330 >UniRef50_A7VNA5 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VNA5_9CLOT Length = 282 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 99/270 (36%), Gaps = 12/270 (4%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPL---MPALCRIRQGKKVINWETHTLTVDNNQIIL 58 + T L R+ + ++H V+ L + +G V +++ Sbjct: 19 PEKELTILSCGHYRLLRLEKLHTVRIQGRRDWQLLYVAKGAGHFFRPREE-RVKQGSVVV 77 Query: 59 FPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC 118 +P G + ++ + E + + + S F+ + + C Sbjct: 78 YPPGEPQDYFYLLKEAP-EIYWIHFTGERAEGLLEEWGLFH----GHSCFVGEQDRYLRC 132 Query: 119 WEQLKTSVSRGFS--TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG 176 +E++ + ++ +LLS+G + + SL+++ N + Sbjct: 133 FEEIIQELQLQPPGFQRLCALRFEELLLSMGRQRLRLKNPQLAGDSLVTQVLNDMYKTYY 192 Query: 177 TKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 +T A+ +SV L RR G S L +R+ A ++++ + EIA Sbjct: 193 RNYTIEDYAKRHNVSVCWLIRRFKQVTGESPNQYLIQIRIRRARELLESSRLNMGEIASV 252 Query: 236 NGYKCPSRFTERFHNRFNITPREIRKASRE 265 GY+ P F+ +F ++P+ R+ ++ Sbjct: 253 LGYESPLYFSRQFKQLQGVSPKRYREQRQK 282 >UniRef50_A7XY51 LngS n=3 Tax=Enterobacteriaceae RepID=A7XY51_ECOLX Length = 298 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 100/257 (38%), Gaps = 16/257 (6%) Query: 22 IHRVKPLMPALCRIRQGKKVINWE-THTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEM 80 + V L + G I E T+ +++ I G ++ Sbjct: 39 VSNVYVAAFTLVCLHHGHVTITDERGRTIHCVAPGLMVLERNQLINITMQEVDGHLSFDV 98 Query: 81 LYLPIDLIESFQKLY---------TVTDQIRNKTSFFLPQNPE----LIYCWEQLKTSVS 127 L +P +L+ +L R S E L + Q K + Sbjct: 99 LDIPHELLTIAHELLIEKLQTEHQPGEHPFRIVYSNDFAARKEVFDLLRFTLSQEKKGIF 158 Query: 128 RGFSTKIQEHLAMGVLLS--LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVA 185 + A+ +LLS + ++ +K S+ + YNLL +EP +W + V+ Sbjct: 159 ENEEKENIATYALLLLLSGFIHDTAFAGIISRSAKLSVKYKVYNLLYTEPDKQWKLDDVS 218 Query: 186 RYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 +++S STL R+LA+EG +F + R+N A ++T ++ +A GY S F Sbjct: 219 SAIFMSASTLKRKLATEGTTFSELYITARMNLASKLLRTGKYSVTNVAVLCGYDSVSYFI 278 Query: 246 ERFHNRFNITPREIRKA 262 F +FNITP K+ Sbjct: 279 ACFKRQFNITPSAFMKS 295 >UniRef50_C0VNX7 AraC family transcriptional regulator n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VNX7_9GAMM Length = 401 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 88/248 (35%), Gaps = 24/248 (9%) Query: 24 RVKPLMPALCRIRQGKKVINWET--HTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEML 81 P L ++ GK + + + + II G+ +EN A L Sbjct: 164 HCTVFKPKL-QVNDGKAYLYFNQPLQQFRFNRHAIIFLVFGFAQIVENL--AQQRLDIRF 220 Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 D + ++K++ I F +N LI L + A Sbjct: 221 EFQQDKPDFYKKIF----NINQLNGEFNAKNDCLILNQNVLSLPLKT----------ADA 266 Query: 142 VLLSLGVNHVNH-----LLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 ++ L + L + S L E + +VA L++S TL Sbjct: 267 LVARLTIQQCKQDIQKLFLKRKNVDSAAKNVKEELYDEALGFLSLKQVAERLHLSERTLQ 326 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R+LA E SFQ ++ +VR A ++ I +IA GY S F+ F N+TP Sbjct: 327 RQLAKEQTSFQLLIAEVRRKQAEFLLKQQHLSIEQIAERLGYADISHFSRAFKKWTNVTP 386 Query: 257 REIRKASR 264 + R+ R Sbjct: 387 KFYREVER 394 >UniRef50_A9GN71 Tra n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GN71_SORC5 Length = 329 Score = 148 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 18/267 (6%) Query: 16 MHKHHEIHRVKPLMPALCRIRQGKKVINWET----HTLTVDNNQIILFPCGYEFYIENYP 71 I + P + I G K I + L QI+L P G + N P Sbjct: 47 TRTRDRITIQRLSRPLVVLILDGAKRIFLDGPDGNTRLVAREGQILLVPQGIPLELVNEP 106 Query: 72 E--AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQN-------PELIYCWEQL 122 + G Y + + L ++ E Q+ Y R F + P + + Sbjct: 107 DPERGAYRSFTIELLSEVDERLQRRYPTLCVQRGLGGFEADRPHLLRSAMPSIQALIHLV 166 Query: 123 KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLIS-----RCYNLLLSEPGT 177 T + G + EH ++L+L + H L + + S ++ L+ +P Sbjct: 167 NTLLLPGAHALLIEHRLEDLILTLLLQHREQLDEARAASSTLALDPTLAVRALVRRDPAR 226 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 W A +VAR L +S +TL RRL ++GVSF+++L RL+ A +++ + E+A G Sbjct: 227 PWAAPEVARALGVSDATLRRRLGAKGVSFRALLWKERLDLAKGLLRSGRHGVLEVATACG 286 Query: 238 YKCPSRFTERFHNRFNITPREIRKASR 264 Y SRF E+F ++P E R R Sbjct: 287 YDSASRFAEQFRRSEGVSPSEYRARHR 313 >UniRef50_B8FMW7 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMW7_DESAA Length = 342 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 68/173 (39%), Gaps = 11/173 (6%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 + ++I F ++ L T + + H Sbjct: 180 PDHAGMYEEIFQCPIVFNAPRHMFVWDKTNLNTPLPLANPLAKKAH----------EKEC 229 Query: 152 NHL-LLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSIL 210 L L +++ SR + + +AR++ +S TL RRL EG SF++I+ Sbjct: 230 RELSLRIRKQETASSRIVQEIEFRRQGVPGFDDLARHMNMSPRTLRRRLKEEGTSFKNIV 289 Query: 211 DDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 DV+ A+ +QTT PI +IA E GY+ F F TP + R+++ Sbjct: 290 SDVQKEKAIHLLQTTNLPIQQIALELGYEDLPNFYRAFKRWTGKTPGDYRQSN 342 >UniRef50_A4A9K9 AraC-family transcriptional regulator n=3 Tax=unclassified Gammaproteobacteria RepID=A4A9K9_9GAMM Length = 336 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 11/187 (5%) Query: 80 MLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLA 139 L + V ++ +F + + E L T + Sbjct: 157 QFPLRFEFPYPAPAHAAVYTEVLGDDVYFDCEAAVWSFPLELLDTPLPSSNPA------- 209 Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLI-SRCYNLLLSEPGTKWTANKVARYLYISVSTLHRR 198 L L LL S + I + +LL G +VA L +S T RR Sbjct: 210 ---LRQLYEAECARLLADLSDSAAIGEQTRSLLRKLEGQYPKMPQVATMLNMSPRTYRRR 266 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L EGVSFQ++LD+VR +A ++ PI+ IA + G+ PS F + +TP Sbjct: 267 LTEEGVSFQALLDEVRAEHATRHLRERRLPIASIAYQLGFNDPSNFRRAYRRWTGVTPGA 326 Query: 259 IRKASRE 265 +R E Sbjct: 327 VRNKGDE 333 >UniRef50_B2HZ04 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2HZ04_ACIBC Length = 341 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 1/124 (0%) Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLIS-RCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 A + + +N L + ++ ++ R ++L + + VA YL++S TL R Sbjct: 214 ADPIASQIAINQCEAELSALGERRRLAMRVRDILSNSEQHYLSIENVAEYLHMSDRTLKR 273 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 +LA+EG SF +++D+VR +A S + T + +IA E GY + F+ F +P Sbjct: 274 QLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPS 333 Query: 258 EIRK 261 RK Sbjct: 334 NWRK 337 >UniRef50_C1DHF9 Transcription activator in PHB biosynthesis, AraC family n=3 Tax=Azotobacter RepID=C1DHF9_AZOVD Length = 348 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 11/184 (5%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A L I+ + + +I N F + + + QL + +S Sbjct: 155 ARFTPLCIEFVHAEPIDTEEYARILNCPIRFNSSHFSIFFDATQLDSPLST--------- 205 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLH 196 A L S+ L + Q R L++ + T ++A L +S TL Sbjct: 206 -ADAALASMHERFAEQRLHEQNSQLSTWRVQQLIMERLSDGEPTIEEIAGTLCVSKRTLQ 264 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R L EG ++ +L++ R A + + + E+A G+ S F F +TP Sbjct: 265 RCLKKEGTQYKDLLNETRREQAHLYLCHSHFSLQEVAYLLGFHEHSSFFRACSRWFGMTP 324 Query: 257 REIR 260 + R Sbjct: 325 GQYR 328 >UniRef50_A4VG28 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VG28_PSEU5 Length = 312 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 11/184 (5%) Query: 83 LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGV 142 L + L +Q +F + ++ L + A + Sbjct: 137 LEVRLCRPVPHRLEAFEQFFGVPVYFGAEANVMLMASGVLDRELP----------AANAM 186 Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLAS 201 + + + L + + + +++ + +A L +S LHR+LA Sbjct: 187 IAGMNEQLLRDYLGRMRHEQVSLQVRKEIIALLSSDKLGLEHIAERLNMSGRNLHRKLAE 246 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 EG SF+ + D++R + AL + + ++EIA G+ S F F +P + R+ Sbjct: 247 EGTSFKELQDEIRQDLALRYLGMSGMSLNEIAFNLGFIDQSSFNRAFKRWTGGSPGQYRR 306 Query: 262 ASRE 265 A RE Sbjct: 307 ALRE 310 >UniRef50_B0MM97 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MM97_9FIRM Length = 283 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 80/251 (31%), Gaps = 19/251 (7%) Query: 24 RVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYL 83 RV L + G + V+ ++++ G + + + G ++ Sbjct: 33 RVPDFC-VLIYVIDGCIYVTEGDTDYEVNAGELLILKNGVHHFGKKKIQKGT-KWIFVHF 90 Query: 84 PIDLIESFQKLYTVTDQIRN---KTSFFLPQNPELIYCWEQLKTSV---------SRGFS 131 I + Y + L L + + + + Sbjct: 91 RISADCNASPFYPDASPLGAYDATAESILTLPKFLDSVSARFEKELKTFIEYAQSDDAYK 150 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 +L SL VN + +L R L G +++ + + Y+S Sbjct: 151 KWFINQRLFLLLSSLAVNTQGF----SNNLTLSDRICRYLSDNIGVPFSSENIEKRFYLS 206 Query: 192 VSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 + E GV+ Q + VR++ A + +T+ I EIA + G+ F+ F N Sbjct: 207 YKYMSHLFKKEKGVTMQQYHNSVRMDEACRLLCSTLMSIGEIADKLGFSDVLYFSRCFRN 266 Query: 251 RFNITPREIRK 261 +P RK Sbjct: 267 YTGKSPSAYRK 277 >UniRef50_D0IA59 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IA59_VIBHO Length = 317 Score = 147 bits (371), Expect = 4e-34, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 9/173 (5%) Query: 95 YTVTDQIRNKTSFFLPQ--NPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVN 152 Y + F WE + + + A + +++ V Sbjct: 151 YPAPKYVDKYRELFNCDIEFNSPKLRWEFYASELQEKLPS------ANKLTVTMCVQSCE 204 Query: 153 HLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 ++L + + ++ +L PG A +VA + S+ TL+R+L+ G ++Q +LD Sbjct: 205 NMLAALQATDDIAAQVQAFILQSPGKFPGAEQVASHFNCSLRTLNRKLSESGQTYQKVLD 264 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + R N A+ +Q T I +I+ G+ P+ F + F TP E R ++ Sbjct: 265 NTRQNLAVRYLQQTSMKIEDISTLVGFSEPANFYKAFKKWTGKTPIEYRNDAK 317 >UniRef50_C6BZC3 Transcriptional regulator, AraC family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZC3_DESAD Length = 293 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 92/264 (34%), Gaps = 10/264 (3%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 + + + K H V +L + +G K I+ + + + G Sbjct: 20 DGITFVQFQSRKSKIRHEVCVSQHSLVFVLEGTKYIHSADGDMVIRKGEAFFCRKGCHLM 79 Query: 67 IENYPEAGL-YLAEMLYLPIDLIESFQKLYTVTD---QIRNKTSFFLPQNPELIYCWEQL 122 E PE G + + + ++ +F + ++++F + ++ + Sbjct: 80 SEMIPEDGGTFDTVLFFFDDAILGNFVDQLSAEKNQIASTDRSAFRIKVTEQVSIYLSSM 139 Query: 123 KTSVSRGF--STKIQEHLAMGVLLSLGVNHVNHLLLSY---SKQSLISRCYNLLLSEPGT 177 + + +L + N +S+ + S ++ Sbjct: 140 LSLFDSPLGKNDDFLRLKVNELLHYIYTASGNDEFVSFLVACRNSSRGDLSAVMERYFNK 199 Query: 178 KWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 + VA S+S+ R + + + R++ A ++ + K I+EI+ E+ Sbjct: 200 NISLETVAELSGRSLSSFKREFKKTFNTTPARWIRERRMSWAEQLLRNSAKSITEISYES 259 Query: 237 GYKCPSRFTERFHNRFNITPREIR 260 GY+ S F+ F + +TPRE R Sbjct: 260 GYESLSHFSTLFRKNYGVTPREYR 283 >UniRef50_Q2SNQ4 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNQ4_HAHCH Length = 365 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 11/172 (6%) Query: 95 YTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHL 154 Y ++ + LI+ + A +L + Sbjct: 200 YENYERYFRSPVSWGDSRYRLIFSRNYFHCRLPN----------ADVLLANENERLCEIY 249 Query: 155 LLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 + L R +LL + + KVA+ L++S +L R L+ EG +F+ ++D+V Sbjct: 250 FGRLFNRKLTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGTNFRELVDEV 309 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 R A ++++ IS+IA G+ F+ F F+ +P R++ +E Sbjct: 310 RQEIAERYLKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSCSPETYRQSLQE 361 >UniRef50_A6VXK4 Helix-turn-helix-domain containing protein AraC type n=3 Tax=Oceanospirillaceae RepID=A6VXK4_MARMS Length = 353 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 69/168 (41%), Gaps = 10/168 (5%) Query: 96 TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL 155 + F L++ L + + + L L+ Sbjct: 182 EYYKTLFQSEVRFNQHANALVFPASYLDMPIVQTE---------DSLRGFLKTAPYQLLV 232 Query: 156 LSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 + + SL S+ +L + + +A++VA L +SVSTL RRL E S+QSI DD R Sbjct: 233 MVENDNSLKSQVMAMLGKDFSREMPSADEVASALNMSVSTLRRRLNDEKTSYQSIKDDCR 292 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 A++ + I++IA G+ PS F F +TP E RK+ Sbjct: 293 KEAAITYMNAPQLSINDIAALMGFDEPSAFFRSFKKWTGMTPGEYRKS 340 >UniRef50_A3M7C3 Putative transcriptional regulator (AraC family) n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M7C3_ACIBT Length = 339 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 15/190 (7%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 L + +L ++ F L++ L + +A Sbjct: 158 LEIKAELNYPEPAFLEQVQELLPCEIQFNQPFNRLVFSENFLALPL----------IMAD 207 Query: 141 GVLLSLGVNHVNHLLLSYS-----KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 + L H L + K L + LL E + VA L+++ TL Sbjct: 208 PLAARLAREQCKHDLNKLAAKRGEKHPLTALVRELLFDEVEGFFKMKDVAEKLHLTERTL 267 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R+LA EGV+FQ +LD VR +A + IS I+ + GY + FT F N T Sbjct: 268 QRQLAKEGVTFQILLDQVRERHAKKLLNHHEYSISYISEKLGYSEVTHFTRAFKRWTNQT 327 Query: 256 PREIRKASRE 265 P++ R E Sbjct: 328 PKQYRNLREE 337 >UniRef50_C6CBK7 Transcriptional regulator, AraC family n=1 Tax=Dickeya dadantii Ech703 RepID=C6CBK7_DICDC Length = 279 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 112/252 (44%), Gaps = 2/252 (0%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 ++ + + + V + + G K + ++ + P G ++ + N Sbjct: 27 SHQVVARRQYLLRTVVMRADLIGLVVSGNKQLVTPEGGNVFVPGELFVLPRGTQWDVIND 86 Query: 71 PE-AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQ-NPELIYCWEQLKTSVSR 128 P G Y+A +L L ++ F + ++ + SF + + + ++ Sbjct: 87 PAPQGNYVARILTLQPEIAARFYQRFSQFALLGPVRSFARVVGRNGIQEAFLRAVAALET 146 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 S+ + +L L +L S S + L+ P W+A VA L Sbjct: 147 AGSSAALREHRVLEVLLLLAEQAGVVLAPPSALSWTEKVQRLVAQRPHADWSAAGVAAAL 206 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +SVSTL+RRLA EGV+ + + D+RL+ AL+ +Q++ +P++ IA++ GY S+FT F Sbjct: 207 AVSVSTLNRRLAQEGVTIAACVRDIRLDAALTLLQSSDRPVAVIAQDVGYVSHSKFTAAF 266 Query: 249 HNRFNITPREIR 260 RF + P +R Sbjct: 267 RRRFGVVPSALR 278 >UniRef50_A4XJ07 Transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XJ07_CALS8 Length = 283 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 89/243 (36%), Gaps = 16/243 (6%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYL-------P 84 L +++G E + + +++ E G + AE + + Sbjct: 36 LIFVKKGNIEFWVEDEKIELRAGDLLIIKPHTRHKFEVV---GNFKAEFIVMGFYLKPES 92 Query: 85 IDLIESFQKLYTVTDQIRNKTSFF----LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 IE+ +++Y + + N +S F + + + +C E + + ++ Sbjct: 93 KSKIEALKEIYGFLESLENISSPFYFIHIRKRSNVFFCLESILQEAKENKKGLLLYIKSI 152 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISR-CYNLLLSEPGTKWTANKVARYLYISVSTLHRRL 199 + + + N + S I++ + + +A+ L++S S++ R Sbjct: 153 ELFIYITREMNNLEIKKGFDYSKIAKFIKDYIDQNYMEDIKIGDIAKKLFMSESSISRLF 212 Query: 200 ASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 S+ G+ + L R+ A + + ISEIA G+ RF + F +P Sbjct: 213 KSQFGILPKEYLLSKRIEKAKEYLSVSNLKISEIAIMCGFSSLQRFNDIFKKYTGCSPTH 272 Query: 259 IRK 261 RK Sbjct: 273 YRK 275 >UniRef50_Q2SDH6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SDH6_HAHCH Length = 351 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 74/210 (35%), Gaps = 12/210 (5%) Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 + + ++ + + T +++ + P + + Sbjct: 127 QFYSISPYNEFNYFVVDCLLSGWSALAHWITGQERLLKEVEIEFEAPPYAQHYQQAFNCP 186 Query: 126 VSRGFSTKIQEHLAMGVLL----------SLGVNHVNHLLLSYSKQ-SLISRCYNLLLSE 174 V G S +LL S V+ N L + SL R ++ Sbjct: 187 VKFGRSRNALIFRKEALLLPSIYANPATHSEIVSICNRELTTLVGATSLTERVKQIITPM 246 Query: 175 P-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIA 233 G + + A+ L +S TL RRL EGV FQ +LD+ R A + ++ T I EIA Sbjct: 247 LQGREVGLTETAKQLGLSEWTLQRRLKKEGVQFQQVLDETRKQIAETYLKATDLTIGEIA 306 Query: 234 RENGYKCPSRFTERFHNRFNITPREIRKAS 263 G+ P+ F F F + P+ + Sbjct: 307 YLLGFSSPAAFHRAFKRWFGVNPKPFKDQH 336 >UniRef50_B5FRI8 AraC family regulatory protein n=32 Tax=Enterobacteriaceae RepID=B5FRI8_SALDC Length = 291 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 10/261 (3%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNN-QIILFPCGYEFYI 67 L+ + K + + L L ++ GK I + + +I +I Sbjct: 18 LQSAQNWQRKSLSLQGLNLLQSVLIKLTTGKISITTSSGEYITASGPMLIFLAKDQTIHI 77 Query: 68 ENYPEAGLYLAEMLYLPIDLIES-----FQKLYTVTDQIRNKTSFFLPQNPE--LIYCWE 120 ++ L I++ + +D + T+ L E + + Sbjct: 78 TMEETHEQLNYNLIELDSASIKNAYNFFLYEHADFSDPLTKPTTKHLLAPIETGVARVFN 137 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLS--LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK 178 L +S ++ ++ + LLS + L S+ +L YN+++S+ K Sbjct: 138 LLHSSNKSQKLSQDKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRK 197 Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 W ++ LY+S STL R+L E SF + + R+N A ++ + I+ +A GY Sbjct: 198 WALKDISDSLYMSCSTLKRKLKQEHTSFSEVYLNARMNKATKLLRNSEYNITRVAYMCGY 257 Query: 239 KCPSRFTERFHNRFNITPREI 259 S FT F F TP E Sbjct: 258 DSASYFTCVFKKHFKTTPSEF 278 >UniRef50_B9JBF3 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JBF3_AGRRK Length = 270 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 60/252 (23%), Positives = 103/252 (40%), Gaps = 10/252 (3%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 M A GK+ + + I ++ + +G K + L + +++ P Sbjct: 24 MPADGKSYSTLFTFVTRQRERIAGSAFAHVSIVVLIEGYKEVLSMGRHLRLPAGTVLVLP 83 Query: 61 CGYEFYIENYP--EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC 118 G+ + N P ++G+Y A + P +L+ R + LP +P L Sbjct: 84 AGWRGDVVNDPNPQSGVYRAIFISFPDELVRRA---IGAFPPARTASQIDLPLDPVLAAA 140 Query: 119 WEQLKTSVSRG-FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT 177 ++ G ++ EH M VL+ LG+ L S ++ L+ +P Sbjct: 141 IHHAGDGIASGELPAELIEHRLMEVLMVLGMRGA----LPASPETTAEAVRALVRWQPDR 196 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 WTA+ +A L S +TL RRL+ EG S + +L R+ A + + + E A G Sbjct: 197 AWTADLIAVELGTSNATLRRRLSREGSSLRDVLASERVALATTLLAEDGLSLREAALATG 256 Query: 238 YKCPSRFTERFH 249 Y+ P RF ER Sbjct: 257 YRSPRRFAERLR 268 >UniRef50_B5JV53 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JV53_9GAMM Length = 342 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 2/205 (0%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 P IEN + A + +L R F + Sbjct: 136 PLVRRHVIENVLASWTIFARWITGKPHESGLEIRLEHAPPTRRELLPEFDRVFGCPVLFN 195 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLIS-RCYNLLLSEP-GT 177 ++ + S + A + S N L S Q+ ++ + + L + G Sbjct: 196 QRETGVLLSAESMDLPLIQADQTVFSSLQETANQRLAELSGQTPVAVQVKSALRTLMKGG 255 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 + VA + ++ T+ RRL E VS+Q IL+++R A+ ++ T + +I G Sbjct: 256 IPRKDTVAEKIGMTSRTMQRRLKEEAVSYQEILNELRHEMAIDLLENTDLSLEDIGHRLG 315 Query: 238 YKCPSRFTERFHNRFNITPREIRKA 262 ++ P F F TP RK+ Sbjct: 316 FQEPRSFHRSFKLWTGETPGNFRKS 340 >UniRef50_P41782 Transcriptional regulator hilD n=38 Tax=Salmonella enterica RepID=HILD_SALTY Length = 309 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 61/273 (22%), Positives = 103/273 (37%), Gaps = 25/273 (9%) Query: 12 EEIRMHKHH-EIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 ++I+ I + L R GK I+ T+ D +++ + Sbjct: 31 QQIKSQTQQVTIKNLYVSSFTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLE 90 Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS-------FFLPQNPELIYCWEQLK 123 G ++L +P + + L Q + F+ P P +E LK Sbjct: 91 EVNGHMDFDILEIPTQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLK 150 Query: 124 TSVSRGFSTK-----------------IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR 166 T+ S T I L + L + ++LS ++ +L R Sbjct: 151 TAFSCTKDTSKGCSNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIILSSAQITLKER 210 Query: 167 CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 YN++ S P +W VA ++++S STL R+LA EG SF I R+N A ++ Sbjct: 211 VYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGN 270 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREI 259 ++ +A + GY S F + F F TP Sbjct: 271 HNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTF 303 >UniRef50_Q1N3I2 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N3I2_9GAMM Length = 338 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 67/188 (35%), Gaps = 14/188 (7%) Query: 83 LPIDLIESFQKLYTVTDQIR---NKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLA 139 +PI+L E +D+ R F L + L + R Sbjct: 158 IPIELAEFNYAKPEHSDEYRLFFYGERLFQRPQTALHFKSSYLDLPIVRTR--------- 208 Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK--WTANKVARYLYISVSTLHR 197 + L L+ + S+ ++ +L VA L S TL R Sbjct: 209 NDLPELLKEAPYVFLVKPNNTTSINAQIRRILQGNMDDSELPDFETVAHKLNTSTQTLRR 268 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL E SFQ+I D VR + A+ + I+EIA + G+ PS F F +TP Sbjct: 269 RLKEENTSFQAIKDQVRRDMAIYYLGDPNISINEIALKVGFTEPSTFHRAFKKWTGMTPG 328 Query: 258 EIRKASRE 265 + R + Sbjct: 329 DYRSEQAQ 336 >UniRef50_A4XSK5 Transcriptional regulator, AraC family n=10 Tax=Pseudomonas RepID=A4XSK5_PSEMY Length = 344 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 4/207 (1%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 P +EN + L A + + + + + + Sbjct: 134 PQVRRHMVENVLASWLLYARWIADSEHSPR--EAWFEHAQPAGTELEEYQALFGCPVLFE 191 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEP-GT 177 + + + A LL H L+ + L R N L Sbjct: 192 QPCNALLVPLDYLGVPLRQADANLLRTLEEHALALMAGLDEDEPLPRRVKNALRLLLKDG 251 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 +VA ++V TL R L G S+Q ILD++R A + + I +IA G Sbjct: 252 LPRKERVAEKFDMTVRTLQRHLQQAGTSYQQILDELRQELAEHYLLRSDLAIQDIACYLG 311 Query: 238 YKCPSRFTERFHNRFNITPREIRKASR 264 + F F TP E R++ R Sbjct: 312 FTEARSFHRSFKGWTGQTPGEFRESRR 338 >UniRef50_B8KKU1 Transcriptional regulator OruR n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KKU1_9GAMM Length = 348 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 11/189 (5%) Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 + Y IDL + ++ +++ F + ++++ L+ +S Sbjct: 163 ESRQWYSRIDLDYPAPEYISLYEEVLGPNLHFEKAHTQIVFPRVLLELPLS--------- 213 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 A +L LL Q + LL + PG + A L +S +L Sbjct: 214 -FANEQAAALCEQQCAALLGQMQAVQGFTGQVRRLLANAPGHHPSIEDAAGKLAMSERSL 272 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRL+ EG +++ ++ D R+ A S ++ I E+A GY S F F + T Sbjct: 273 RRRLSEEGTTYKEVVLDFRMELASSYLRGREMTIQEVAFLAGYADASNFHRTFSRYYGAT 332 Query: 256 PREIRKASR 264 P E R + Sbjct: 333 PGEFRAGEQ 341 >UniRef50_C5BHZ4 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BHZ4_TERTT Length = 350 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 4/207 (1%) Query: 58 LFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIY 117 L +I N A AE L + K+ + R + +I+ Sbjct: 142 LLSDADPGHILNAIIAWHKFAEWLTGKD---IALHKVALRHPKSRGCEPLACVRQESVIH 198 Query: 118 CWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT 177 + + S+ ++ L + + K S R N+L E Sbjct: 199 DCSDVGFAFSKAVLEYPLVQDHESLMAFLSTAPYHLVTQDPLKLSFTERVRNILKREVNR 258 Query: 178 K-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 +A +++ L +SV+T+ R+L+ EG S+Q + D+ R+ A+ + ++IA + Sbjct: 259 SIPSAEQLSEMLNMSVTTMRRQLSKEGTSYQKLKDECRMEVAIHYLACAELSNADIAEKL 318 Query: 237 GYKCPSRFTERFHNRFNITPREIRKAS 263 G+ PS F F TP E R+ Sbjct: 319 GFDEPSAFFRSFKKWTGQTPGEYRQQQ 345 >UniRef50_A8S939 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S939_9FIRM Length = 291 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 4/263 (1%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 LA+ + +H R L +G +I + + Q +L C Sbjct: 24 LAQPYYCTEAGVFYAQQHFSTARTDKESYILFYTLRGAGLIEQGESHVVLSTGQALLLNC 83 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 P + ++L + + + L + T L Y Sbjct: 84 RTPQSYCTAPGQSCWHHYWVHLDGAGVAAMEPLLL---PGKKLTPVQLTGVKMQEYFEML 140 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 L + + LA+ +L+L + + S + +I + L + Sbjct: 141 LGQMEHSTVDSMVTTGLALHEMLALCARSILAQAEATSARQVILQAAETLSKNYQKELYL 200 Query: 182 NKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 + ++S S R G + + L + R+ A + T +SEIA+E G+ Sbjct: 201 ADLLAEAHMSKSYFLRLFRRYMGTTPYNYLVNFRITQAKELLVLTDHSVSEIAQEVGFGD 260 Query: 241 PSRFTERFHNRFNITPREIRKAS 263 S F+ RF +P + RK + Sbjct: 261 ASNFSTRFAKATGQSPLQYRKRA 283 >UniRef50_C5T965 Transcriptional regulator, AraC family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T965_ACIDE Length = 346 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 13/217 (5%) Query: 60 PCGYEFYIENYPE--AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFF-LPQNPELI 116 Y + P+ +Y + + + F+ LY + + P EL Sbjct: 129 NATYTLDVVLTPDAQDPIYRFALEFSCAAHLTIFRDLYGSNFKFSSLCLACPKPGYAELY 188 Query: 117 YCWEQLKTSVSRGFSTKIQEHLA--------MGVLLSLGVNHVNHLLLSYSKQS-LISRC 167 + + S+G + + + V + V + L S + S+ Sbjct: 189 EEYFDCPVNFSQGVNQWRIDAIWVDSPRKMPDAVAHLMAVEYCQKFLSELSHVGGVASQV 248 Query: 168 YN-LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 LL P T + +A L + TL RRL +EG +++ +L R A+ ++ Sbjct: 249 RRALLEKTPANFPTIDLMAEELGMQERTLRRRLEAEGTTYRELLAGARKLLAIDYLRANK 308 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +IA GY + F F+ TPR RK + Sbjct: 309 LKTMDIATRLGYSDVANFRNAFYRWTGHTPRHYRKQN 345 >UniRef50_B2JV94 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B2JV94_BURP8 Length = 372 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 64/172 (37%), Gaps = 11/172 (6%) Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE----------HLAMGVLLSLGVNH 150 + + F Q P + L+ + + LA + + Sbjct: 191 VPARAMFTRAQPPHAALLADVLECPLVFEQPQNLLSYPAAWLSRTPQLANPITAAQVSTQ 250 Query: 151 VNHLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 LL + + + R Y L PG ++A L ++ TL R+L +EG S+ + Sbjct: 251 CARLLEQFRWQAGITRRVYQELTRTPGRFPDIEQIAESLCMTSRTLRRKLEAEGASYSEL 310 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 L VR A+ ++TT + +IA G+ F F TP ++R+ Sbjct: 311 LTGVRKALAVDYLKTTALSVDDIALTLGFSDAVSFRHAFKRWTGKTPNDVRR 362 >UniRef50_A5EF29 Transcriptional regulator, AraC family n=2 Tax=Proteobacteria RepID=A5EF29_BRASB Length = 382 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 96/262 (36%), Gaps = 19/262 (7%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPAL---CRIRQGKKVINWETHTLTVDNNQIILFP 60 G + H ++ P L R+ G + + P Sbjct: 106 YGYALASSKTFGDALHLSFRHLRQAGPMLQITSRVEDGVVKLRSHD---PASLGD--MLP 160 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLP-QNPELIYCW 119 EF+ +L+ +L P+ + + F P + W Sbjct: 161 FVAEFW---RSSNLTFLSRVLEAPVPSLRMLLPYPAPPHWRQYGRMFNCPVEFGADTMEW 217 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTK 178 ++++S A ++ + +L S L +L+ +PG Sbjct: 218 HLAESTLSVPLPN------ANPMVAKVCERFCEQVLSEQRPASELAESIRTILVRQPGRF 271 Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 T +++A + +S+ TL+RRLA++G+++QSI+DD+R A+ ++ T P+ +I G+ Sbjct: 272 ATIDEIASEIGMSLRTLNRRLAADGITYQSIIDDMRKTLAIEYLERTTLPVEQICARVGF 331 Query: 239 KCPSRFTERFHNRFNITPREIR 260 S F + F +P R Sbjct: 332 SDTSNFRKAFKKWTGQSPSSFR 353 >UniRef50_P32326 Urease operon transcriptional activator n=12 Tax=Gammaproteobacteria RepID=URER_ECOLX Length = 296 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 108/271 (39%), Gaps = 14/271 (5%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY-- 66 ++ + + + + K I ++ ++++ ++ P + Sbjct: 1 MEYKFFLSESQMVLKAFYIESAMIAMLTGAKGNIVINGQSIEIESDVTLIIPKYSQVSCN 60 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLY-----TVTDQIRNKTSFFLPQNPELIYCWEQ 121 I L + + +++ L + ++ + + + + Sbjct: 61 IVCNTVKQPLELHTLSMSAEELQAVFLLLKTLMKSGAPLTSHQPIYHISPPETVRDNFSL 120 Query: 122 LKTSVSRGFSTKIQEHLAMG-----VLLSLGVNHVN--HLLLSYSKQSLISRCYNLLLSE 174 LK + + QE L M +L+++ ++ +L + +L+ E Sbjct: 121 LKQCLPLKKQSASQEALLMKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQE 180 Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 P KW + VA+ L+ + STL R L EGVSF+ +L DVR+ AL+ + + + +I+ Sbjct: 181 PQKKWHLDDVAKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSNYSVFQISH 240 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKASRE 265 G+ + F + F ++N+TP + R SR+ Sbjct: 241 RCGFGSNAYFCDVFKRKYNMTPSQFRLQSRQ 271 >UniRef50_Q2SPI7 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPI7_HAHCH Length = 333 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 13/194 (6%) Query: 73 AGLYLAEMLYLPIDLIESFQKLY-TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 A +++E +YL + Y ++I F L + + L + + Sbjct: 150 ARRFVSEKIYLTKVGFSHPEPEYVAEYERIFQCPVSFNQPCCSLAFNKDFLTFELPQRNP 209 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEPG-TKWTANKVARYLY 189 L V LL S ++++ + ++ A KVA + Sbjct: 210 ----------YLHQALTRQVEALLQKLSLRRTVSHKVKAIVAKRLSRGDIEAEKVAEKMN 259 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S TL+R+L EGVSFQ +++ VR + AL +Q +SEIA G+ S F+ F Sbjct: 260 MSRHTLYRKLKQEGVSFQELVEQVRKDKALDYLQKGKYSLSEIAFLLGFSELSAFSRAFK 319 Query: 250 NRFNITPREIRKAS 263 +P R Sbjct: 320 RWTGESPASYRSQQ 333 >UniRef50_C4Z3B4 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z3B4_EUBE2 Length = 291 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 104/279 (37%), Gaps = 21/279 (7%) Query: 3 ARGKTNLKIEEIRMHKHHEIHRVKPLMPA---LCRIRQGKKVINWETHTLTVDNNQIILF 59 + ++ + V L I++G +++ + V+ I++ Sbjct: 14 SHFDSDFLYNTYPCSIPLDFTEVPLHWHNEMELIYIKKGCMIVSVDLEYSVVNAGDIVVV 73 Query: 60 PCGYEFYIE-NYPEAGLYLAEMLYLPI--------DLIESFQKLYTVTDQIRNKTSFFLP 110 G+ I N ++ Y + L + D + F + S P Sbjct: 74 MPGHIHSIIQNESDSCEYENILFNLDMLVSRQCDYDTVSFFNGIAGFNGYCPPVISKTAP 133 Query: 111 QNPELIYCWEQ---LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNH----LLLSYSKQSL 163 +LI+ ++ + G+ KI+ L L + H + LS K Sbjct: 134 HYSDLIHYIDEADNICKYFPDGYRLKIRACLFN-FFFELNAHFYTHTDMPVHLSDDKMDK 192 Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAI 222 + N + + ++A++ + S S + + G SF + L+D RL A + Sbjct: 193 LKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYLNDYRLIIAARIL 252 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +TT +P+ +A + G+ S F +F ++ ++PRE RK Sbjct: 253 KTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK 291 >UniRef50_C7PHM8 Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PHM8_CHIPD Length = 286 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 104/271 (38%), Gaps = 16/271 (5%) Query: 3 ARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCG 62 + + ++ I R ++ + + +G+K +++ +T+ +Q ++ G Sbjct: 14 KQDEGDISILRYRTSTPAPRAKIMLQQNLITFLLEGEKTVHFAGAQVTLKPHQFVMLAAG 73 Query: 63 -YEFYIENYPEAGLYLAEMLYLPIDLIESF----QKLYTVTDQIRNKTSFFLPQNPELIY 117 + Y + ++ L+ F + L + ++ ++ F L + + Sbjct: 74 NCLMSEKAAAVNADYHSILILFDNKLLADFFNRHRALLSQQTKVADQPPFLLFEKDTFLL 133 Query: 118 CW-EQLKTSVSRGFS--TKIQEHLAMGVLLSLGVNHVNHL-----LLSYSKQSLISRCYN 169 + L ++ G +Q+ + L L V++ + + + + + L+ Sbjct: 134 NFIHSLDCMLNDGQPIYHALQKVKLEELFLYLAVHYPGQIQQIRNMSADANEDLV--IRQ 191 Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKP 228 + S + T ++A +S+S+ RR A + L + R+ A ++ Sbjct: 192 AVTSHMDSNITVEELAFLCNMSLSSFKRRFARIYDNTPNRWLLEKRMEKAAKMLKQDKLK 251 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREI 259 SEI E GY+ S F + F + TP++ Sbjct: 252 ASEIFYELGYENLSSFIQSFKQIYGKTPKQY 282 >UniRef50_Q7MC65 AraC-type DNA-binding domain-containing protein n=16 Tax=Gammaproteobacteria RepID=Q7MC65_VIBVY Length = 253 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 90/251 (35%), Gaps = 20/251 (7%) Query: 13 EIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 IR + L QG I ++ V ++ G + + E Sbjct: 22 SIRAYTKQLQSHTHEDYHQLVLPLQGSIEITMPHYSGKVVVGDCVVICAGRQHAFKADEE 81 Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 A +A++L LP+ L ES ++ +T +++ SF QL+ V G Sbjct: 82 ARFIVADLLSLPVHLYESETPVFRITPPLQSFLSFVEK----------QLEFQVDSGIEA 131 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 I + +M + V L + + ++ T +A +S Sbjct: 132 SILDVFSMLLTQQALRQVVEPRLRT---------VQSYIVEHLDQPLTIELLANRACLSP 182 Query: 193 STLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 + +R G S + +R+ A + + T P+ +A + GY S F+ RF Sbjct: 183 TQFKKRFKESVGESALQYITALRMEKAKALLTHTDLPVQRVAEQVGYTDLSAFSRRFSRH 242 Query: 252 FNITPREIRKA 262 F ++PR +A Sbjct: 243 FGLSPRAFCRA 253 >UniRef50_Q03FA9 Transcriptional regulator, AraC family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03FA9_PEDPA Length = 298 Score = 143 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 90/255 (35%), Gaps = 6/255 (2%) Query: 15 RMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG 74 + H L GK V+ T +++ I+L P G E + + Sbjct: 42 KARYHFVHRDRGTEEWILIFCTHGKGVVKSATEEWLIESGSIVLLPPGKEHTYYAF-DDD 100 Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQN-PELIYCWEQLKTSVSRGFSTK 133 + + D + + + + ++ L+ + Q+ ++S GFS + Sbjct: 101 PWDIFWAHFNGDSVNEYIPQEALQGNGFLVINKTSTEDMQMLMSQFWQMIQALSAGFSYQ 160 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYS---KQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 + + + +L + +L S I++ + K + + + L + Sbjct: 161 SVFYSSQVLGATLAYVSLQSVLPHDSYTMGNEYITKAVKYIYDHFEEKVSLSTLTEVLDV 220 Query: 191 SVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 S S L R G S + D+++ A ++ T + +IA GY P F+ F Sbjct: 221 SKSYLSRIFRQTVGTSVNQFILDIKMKQACYYLKDTNLAVHQIASRLGYDDPYYFSRIFK 280 Query: 250 NRFNITPREIRKASR 264 +PR RK + Sbjct: 281 KVVGSSPRVFRKQEK 295 >UniRef50_Q5ZTY8 Transcriptional regulator OruR, AraC family n=4 Tax=Legionella pneumophila RepID=Q5ZTY8_LEGPH Length = 337 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 11/182 (6%) Query: 83 LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGV 142 L I+L I F + + + E+L + H A V Sbjct: 163 LKIELNYDEPPYAKYYQTIFQTKIIFNTEATRVWFKAEELNYPI----------HFADDV 212 Query: 143 LLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 L + L S K+ + S+ ++L+++ + +++A L ++ TL R L Sbjct: 213 SYQLAKRQLQELEKKMSLKEDMASKIKSILINQNLNHVSMDEIASRLCMTSRTLRRHLQR 272 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 V++Q +LD+VR A + + ++EI G++ S F++ F ITP E R+ Sbjct: 273 LDVTYQELLDEVREQKAKTFLLNNNISMTEICFLLGFQDTSNFSKAFKRWTGITPTEYRE 332 Query: 262 AS 263 Sbjct: 333 KH 334 >UniRef50_D0S2A2 Transcriptional regulator n=1 Tax=Acinetobacter calcoaceticus RUH2202 RepID=D0S2A2_ACICA Length = 339 Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 17/192 (8%) Query: 70 YPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG 129 P ++ + LP + + ++ F +I+ L + + Sbjct: 161 LPIQFPVMSINIALPAPVYAN------KFPELTGYPIQFNQPRSCIIFESSLLDLPLPQ- 213 Query: 130 FSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYL 188 A + + L S S + N+LL +P +++A +L Sbjct: 214 ---------ADPFIRARYEEECQQLWTRRSSLGSYSQKVRNILLQQPSQMPRIDEMAAHL 264 Query: 189 YISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERF 248 +++ TL R LA EGV+++ ++DD+R + A ++TT + E+A + GY S F+ F Sbjct: 265 QVNLRTLQRHLAIEGVTYEQLIDDIRKDLAEDLLKTTNLTVEEVAIQLGYSEVSAFSRAF 324 Query: 249 HNRFNITPREIR 260 I+PR R Sbjct: 325 KRWKGISPRNFR 336 >UniRef50_B7S369 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S369_9GAMM Length = 357 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 87/245 (35%), Gaps = 13/245 (5%) Query: 24 RVKPLMPALCRIRQG-----KKVINWETHTLTVDN--NQIILFPCGYEFYIENYPEAGLY 76 R A CR+RQG + ++ + T+ + + G + + L Sbjct: 118 RRAIEFNATCRVRQGVEVINRLKVDADGKEATLSYLYGEDL---PGVQHSVLCNLAMWLR 174 Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 L + + S + F P + + S + +++ Sbjct: 175 FCGWL-IGQHIDISSATCAGPEPEFTAGVRHFFPCPVQYEQPTNSVSFSARHLEAELLRD 233 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTL 195 + L L HV + S S+ R +L + + ++ L +S TL Sbjct: 234 EPQLQEFLKLAPYHVI-IEPQASTFSVTHRIRKILGDDFRAEMPSFEELTSLLNMSARTL 292 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRL EG S+Q I D+ R + A+S + +SE+A G+ PS F F ++ Sbjct: 293 RRRLEKEGTSYQRIKDNARRDAAISLLSREGLTVSEVAERVGFSDPSAFHRSFKKWTGLS 352 Query: 256 PREIR 260 P R Sbjct: 353 PGSYR 357 >UniRef50_Q0VMP4 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VMP4_ALCBS Length = 334 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 18/191 (9%) Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKI 134 + + LP +F+ ++ + + F + + L + + Sbjct: 160 PLSSLEIRLPPRTAATFESIFGLVPE-------FGRPRSQARFALGLLDMPLPQANP--- 209 Query: 135 QEHLAMGVLLSLGVNHVNHLL-LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 V L + LL Y K S+ ++ LL +PG +A+ L I+ Sbjct: 210 -------VTARLCEEQCHQLLVQRYRKGSVAAQVRRRLLQQPGRFPDMEAMAQELAITSR 262 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL R L +EG ++ +LD+VR A + + ++EI+ G+ + F F Sbjct: 263 TLRRHLQAEGTGYRMLLDEVRQMLAEQWLTLGILSLTEISERLGFSEIANFNHAFRRWTG 322 Query: 254 ITPREIRKASR 264 +P R+ + Sbjct: 323 QSPGRFRRERQ 333 >UniRef50_C0ERJ9 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERJ9_9FIRM Length = 294 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 21/276 (7%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPL---MPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 + + V + I++G +++ + T +V II Sbjct: 20 HTPDDFPYNTYLCSIPLDFQSVNLHWHDEVEIIVIKKGSGIVSVDLTTYSVSAGDIIFVL 79 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIES----------FQKLYTVTDQIRNKTSFFLP 110 G I + + + E + L++S Q L++ + I + P Sbjct: 80 PGQLHAI-SQKDNEIMEYENILFKSSLLKSSGYDLCNDKFIQPLFSGSLNICPVINNQTP 138 Query: 111 QNPELIYCW---EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSL--IS 165 P +I + L + I+ H +L +L N + + +++SL I Sbjct: 139 YYPPVITAINEIDHLCDLRPYAYQLSIKAH-LFQILYTLVSNCGQNKIKPINQKSLKKIK 197 Query: 166 RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQT 224 + + + +A Y + S S + GVSF L+D RL A + T Sbjct: 198 TILSYIANNFQENIAIEDIANYCFYSKSYFMKFFKETMGVSFIQYLNDYRLEIAAELLTT 257 Query: 225 TVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 T I +IA G+ S F F ++ ++PR+ R Sbjct: 258 TTDNILDIAFATGFNNISYFNRCFKKKYGVSPRKYR 293 >UniRef50_B9BGF1 Transcriptional regulator, AraC family n=1 Tax=Burkholderia multivorans CGD1 RepID=B9BGF1_9BURK Length = 469 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 11/172 (6%) Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFST----------KIQEHLAMGVLLSLGVNH 150 + + F P+ P + L+ ++ LA + + + Sbjct: 294 VPARAQFAQPRPPHAALLADVLECPIAFDQPRHALGYPSAWLARAPQLANPITAAQVSSQ 353 Query: 151 VNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 LL Q + R Y L PG + +A L I+ TL R+L +EG S+ ++ Sbjct: 354 CARLLDELRSQADVTRRVYQELTRTPGQFPDIDAIADSLCITSRTLRRKLEAEGTSYSAL 413 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 L VR A+ + TT I +IA G+ F F TP ++R+ Sbjct: 414 LTSVRKALAIDYLSTTTLSIDDIASTLGFSDAVGFRHAFKRWTGTTPSDVRR 465 >UniRef50_C8Q2W3 Transcriptional regulator, AraC family n=1 Tax=Pantoea sp. At-9b RepID=C8Q2W3_9ENTR Length = 285 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 108/248 (43%), Gaps = 8/248 (3%) Query: 19 HHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQII-LFPCGYEFYIENYP--EAGL 75 + PAL + G+ + +++ ++ + G + YP EA Sbjct: 40 QQKASSFFFYEPALLLVLSGRIEFSHGAKPYQLNSPTLLGVIDQGVDADYIKYPATEAAA 99 Query: 76 YLAEMLYLPIDLIESFQKLYTVT---DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 + + + L D++++F + + + + + + + L + S Sbjct: 100 FRSLFISLNADVLDAFYQQFPQYLVGTRKNAQITTVELLSHQQESIRNLLAMLENPQISD 159 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 +LL L ++ LL +Q + R LL P WTA L +S Sbjct: 160 DRVRLRIFDLLLVLAEQNIRFLL--PQQQGIFPRLSKLLREAPDKGWTAKVAGDALAMSE 217 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 STL RRL EGV F+ +L D+R+++AL IQTT ++++A GYK SRFTERF RF Sbjct: 218 STLRRRLRQEGVRFEQLLLDIRMHHALMLIQTTHWNLAQVADACGYKSVSRFTERFRYRF 277 Query: 253 NITPREIR 260 +P ++R Sbjct: 278 GNSPAQLR 285 >UniRef50_Q2SUV3 Transcriptional regulator, AraC family n=34 Tax=pseudomallei group RepID=Q2SUV3_BURTA Length = 398 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 7/224 (3%) Query: 41 VINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQ 100 + E TL +D+ P + A L + +L L Sbjct: 181 TVRGEDATLVIDDRD---LPGDVRDVLVEITVAALITLQFDLDSANLPVKRLALKMKPPA 237 Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYS- 159 + +PE L ++ + + +L Sbjct: 238 YAGRFRTLFDASPEFGAAHNALT---VDAHCLALKLPQRNALTRRQCEDECRRVLERRRR 294 Query: 160 KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 + R L +P T + +A L +SV TL RRLA EG +++++D++R A Sbjct: 295 SEGWAGRVRRHLAGDPARGPTMDVLAAELGVSVRTLRRRLADEGTDYETVVDEIREALAE 354 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + + TT ++E++ GY PS F F ++P E R+++ Sbjct: 355 ALLATTTLTVAEVSERLGYSEPSAFARAFRRWKAMSPNEYRRSA 398 >UniRef50_A3JHC0 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=A3JHC0_9ALTE Length = 342 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 11/183 (6%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 + + I+L + V Q F L L T Sbjct: 165 RLRNIQIELPIPRPQWGDVYQQRCGCPVMFDAPAFRLQMPVSVLDTP----------CLT 214 Query: 139 AMGVLLSLGVNHVNHLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 A + + L +L + N LL+ P + + VA L +S TL R Sbjct: 215 ADAGTFRTALRDCENQLRQLDYGGALSQQVSNCLLNSPDGYPSLDDVASRLAMSRRTLIR 274 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 +L +EG S+Q +LD VR A + T + +IA GY+ S F+ F F +TP Sbjct: 275 KLKTEGTSYQDLLDGVRQELAAWYLLETTVAVEQIAERLGYQDTSNFSRTFRRWFGMTPH 334 Query: 258 EIR 260 +R Sbjct: 335 AMR 337 >UniRef50_A4XWL1 Transcriptional regulator, AraC family n=5 Tax=Bacteria RepID=A4XWL1_PSEMY Length = 364 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 12/180 (6%) Query: 95 YTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLS--------- 145 + + +IR + + F P+ +E L R + L Sbjct: 183 WLIGQRIRLEEATFAYPEPQHSAEYELLFPCTRRFGAGATSLLFHARYLAMPLLQDERTL 242 Query: 146 ---LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 L + + L SLIS+ LL + T +VA+ L+ S TL R L E Sbjct: 243 KQFLEHSPADLLARPDGGDSLISQIRRLLGRDCRTWPDLEQVAQQLHTSPQTLRRHLREE 302 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G SFQ + D +R + A+ + I +IA + G+ PS F F +TP R Sbjct: 303 GTSFQELKDHLRRDLAIYHLGRDELAIHDIAEQLGFSEPSAFHRAFKKWTGLTPGAYRAQ 362 >UniRef50_A6AXU3 Transcriptional regulator, AraC family protein n=3 Tax=Vibrio parahaemolyticus RepID=A6AXU3_VIBPA Length = 238 Score = 142 bits (359), Expect = 8e-33, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 6/203 (2%) Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 ++EN +G LA ++ +F++L SF L P ++ + LK Sbjct: 34 FVENANISGFRLAACFIEKLNQQLNFRELCDGVFSGNVAVSFTLR--PGIVDIYSALKAM 91 Query: 126 VSRGFSTKIQEHLAM----GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA 181 V +G + + L + L + + S SL SR L+ + WT Sbjct: 92 VEKGCGNRSNDELLDINSMLLYLLMHFEQSASQAETRSYSSLSSRIRALISKDLTKPWTL 151 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 ++A+ +Y+S ST+ R+L EG +F +L RL+ A + + +S IA G+K Sbjct: 152 KEIAKLVYMSESTVKRKLNKEGTTFTDVLQAARLDTAQKMVCNSDASVSAIAELCGFKHA 211 Query: 242 SRFTERFHNRFNITPREIRKASR 264 S F F + TP RK ++ Sbjct: 212 SYFGACFRKEYGATPLAYRKQAQ 234 >UniRef50_B7S1R2 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1R2_9GAMM Length = 342 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 11/157 (7%) Query: 108 FLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY-SKQSLISR 166 F + + L + + + L+ S S + Sbjct: 193 FGGAEGRFYFSSDLLDKPLPKSDPESSRHL----------QQQCQMLIAKMTSHGSFVDE 242 Query: 167 CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTV 226 L+L+ PG + +A + +S TL RRL +EG +F+ +L+++R A + T Sbjct: 243 VRLLMLARPGYFPDIDALAGKIGMSARTLRRRLKNEGSTFREVLEEIRYGLAREYLANTH 302 Query: 227 KPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 P+ EI+ GY F+ F ++P R+ + Sbjct: 303 LPMDEISLLLGYTEAGNFSHAFKRWSGLSPSLWRQHA 339 >UniRef50_D0KCL6 Transcriptional regulator, AraC family n=5 Tax=Pectobacterium RepID=D0KCL6_PECWW Length = 288 Score = 142 bits (359), Expect = 9e-33, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 8/250 (3%) Query: 17 HKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVD-NNQIILFPCGYEFYIENYPE--A 73 + R L + G+ +I + T VD +Q+ L + P Sbjct: 41 RIPQQTTRFHFYEATLLLVLSGQLIILEQDKTTVVDTPSQLCLITPDARADLTKTPGGHD 100 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFF--LPQNPELIYCWEQLKTSVSRG-F 130 + + L L+ F Y + F L + +L + L ++ Sbjct: 101 PAFRSIFLTFSPTLLARFYLRYPEQLTQVYRLRPFTALALDGDLTRTLQHLVEGITGNTL 160 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 + E M +LL L + + + + ++ L+ EP WTA R L + Sbjct: 161 NESRLELRLMDMLLVLSERGYHFGVPP--QPGVSTQLRALISEEPERHWTAQSAGRLLAM 218 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S +TL RRL++E F+ +L + R+ +A+ +QTT + +A GYK +RF+ERF Sbjct: 219 SEATLRRRLSAEQTRFEVLLLETRMQHAMMLVQTTSWSMQRLAEACGYKSSARFSERFKT 278 Query: 251 RFNITPREIR 260 RF +P +IR Sbjct: 279 RFGCSPTKIR 288 >UniRef50_UPI0001789C33 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789C33 Length = 293 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 86/243 (35%), Gaps = 13/243 (5%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESF 91 + + +G E + + + + P G + + L+E Sbjct: 41 ISYVEEGSGYHYVEDQLIPIKRGDLFVIPIGTSHVFRPSSQDNQLVIYNCIFRTCLLEQL 100 Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYC--WEQLKTSVSRGFSTKIQEH---------LAM 140 + + + ++ + P L Y +++ + + F +++ + Sbjct: 101 KSVICESTKLHSLLYGSSPSAKWLQYQDKFDKFLSIMHGMFREYLKKGPRYEFLMMGQLI 160 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 VL L + ++S ++ + T T +VA ++S S R Sbjct: 161 QVLAMLQRYECDGSMVSTPTNNMDDAI-QYINDHFATNLTVQQVAERSFMSPSHFQRLFK 219 Query: 201 SE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 GV+F L ++R+ +++T I E A + GY+ F F + +TPRE Sbjct: 220 KTTGVTFMQFLQNIRVQRCCELLKSTEISIQEAANQVGYQDMKFFHSLFRKKTGVTPREY 279 Query: 260 RKA 262 R++ Sbjct: 280 RRS 282 >UniRef50_B9K0J1 AraC-type DNA-binding domain-containing protein n=1 Tax=Agrobacterium vitis S4 RepID=B9K0J1_AGRVS Length = 343 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 64/179 (35%), Gaps = 9/179 (5%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 + +D ++ F IY K + ++ L Sbjct: 168 PVRVDFAYPAPAHTEAYQRVFGCPVRFGQMENAFIYDAAWYKQPLLTSDPLSHRQLLEFM 227 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 + S +I +L + ++ +KVAR L +S TL RRLA Sbjct: 228 AY---------NRARSREAAEIIESVERVLRQKLHSRMHISKVARALGMSERTLRRRLAE 278 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 GVSFQS+LDD+R N L + + +IA G+ P F F TP +R Sbjct: 279 SGVSFQSLLDDLRKNRTLELLGNRNMSVEQIAFAVGFSDPHNFRRAFRRWTGTTPGALR 337 >UniRef50_B5JUK1 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUK1_9GAMM Length = 332 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 10/176 (5%) Query: 89 ESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGV 148 + I N F +L + + L+ V++ T ++ L Sbjct: 164 YPAPPHQSAYKAIFNTELHFDQAVTQLEFPAKFLELPVAQSERT---------LVEFLRE 214 Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 + + L +S R L+ + VA L +S TL RRL EG S+Q Sbjct: 215 SPADLLARPAKDESYAGRIRALIGYDIECDLPAFESVAEQLGLSPQTLRRRLKEEGTSYQ 274 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + D +R + AL + I EIA++ G+ PS F F +TP + R+ Sbjct: 275 ELKDLIRRDIALHFLNKPQYSIHEIAQKVGFAEPSAFHRAFKKWVGLTPSDYRQTH 330 >UniRef50_B1YT91 Transcriptional regulator, AraC family n=2 Tax=Burkholderiaceae RepID=B1YT91_BURA4 Length = 247 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 41 VINWETHTLTVDNNQIILFPCGYEFYIENYPEAG--LYLAEMLYLPIDLIESFQKLYTVT 98 + + +D + +F +EN+ L+ + + P ++S +L+ Sbjct: 27 RLTQRDGIVDIDVLEAFALGRLRQFAVENFLVETAILFNSLLDPAPGRTLQSRAELHFEW 86 Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY 158 + + + I A + V L Sbjct: 87 PEPPWFERYRARLPRCHFNASANRIRCDAALLDEPI--GTANAQTAQMIVQQCEAELARL 144 Query: 159 S-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 +S++ R NLL+ + + VAR L++S TL R+LA G ++ ++LD++RL + Sbjct: 145 GYAESIVERVRNLLICGDAGYPSVDDVARELHVSARTLKRKLAEFGATYSTLLDEIRLRD 204 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 AL ++ T P+ EIA GY + FT F + P E R Sbjct: 205 ALRLLEGTRLPVDEIAARVGYTDRANFTRAFKRWTGVAPSERR 247 >UniRef50_Q2SUK1 Transcriptional regulator, AraC family n=37 Tax=Burkholderia RepID=Q2SUK1_BURTA Length = 347 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 11/176 (6%) Query: 88 IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLG 147 E + Y + R F ++ L + A + Sbjct: 182 FEWPEPPYFARYRDRLPRCHFGAPANQIRCEAALLDEPIRT----------ANAHTAQMI 231 Query: 148 VNHVNHLLLSYS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSF 206 V L +S++ R NLL+ + + +AR L++S TL R+L+ G ++ Sbjct: 232 VQQCEAELARLGYAESIVERVRNLLIRGNNGYPSLDALARELHLSERTLKRKLSDYGATY 291 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 ++LD++RL +AL ++ T + EIA GY + F+ F +P R+A Sbjct: 292 SALLDEIRLRDALRLLEGTHLTVEEIAARVGYTDRANFSRAFRRWTGTSPSSRRRA 347 >UniRef50_Q1N621 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N621_9GAMM Length = 339 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 10/176 (5%) Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVN 149 + + + F Q LI + L + + L S+ Sbjct: 171 AAPDYASAYEDYFECPVLFGQQRNALIIKSDALSWPLLQHDKNAFLN------LKSICDE 224 Query: 150 HVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQS 208 + + ++ L + + + + T +VA L + TL R+L SFQ+ Sbjct: 225 RLAQ---ASRERDLSEKVMDEIGPLLEGQTPTIEQVADSLGMPPWTLRRKLQDHDTSFQN 281 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +L++ R A S ++ T I EIA G+ P+ F F +++P + RK R Sbjct: 282 LLNETRRGLAESYMKDTDLAIGEIAYLLGFSSPTAFQRAFKRWTSLSPGQYRKIKR 337 >UniRef50_Q6FBV2 Putative transcriptional regulator (AraC family) n=3 Tax=Acinetobacter RepID=Q6FBV2_ACIAD Length = 347 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 13/223 (5%) Query: 48 TLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS- 106 L +DN+Q + + P+ A ++ L L+ D I+ K+ Sbjct: 119 QLKIDNHQAYIVLQDRQH-----PKRMFVYATLIMLIHGLLCWLSDQRISIDHIKIKSVK 173 Query: 107 ------FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSK 160 +++ ++ + ++ +++ + ++ L N L+ ++ Sbjct: 174 PIYPQDYYIRFCEKIEFSSDENLIAINSACLKLKIKKNKNDLINFLKHTPHNLLVRYKNE 233 Query: 161 QSLISRCYN-LLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 +L L+ P +++ L++S +TL RRL +E +S+Q++ +++R + A+ Sbjct: 234 DALGLLIRRHLIRHHPSEWPELKQLSHELHMSEATLQRRLKAENMSYQALKNEIRCDIAI 293 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + T ++EI+ + PS F F ++P RKA Sbjct: 294 EQLINTKHTLNEISEALDFHDPSAFHRAFKKWMGMSPSAYRKA 336 >UniRef50_A9ATI3 AraC family transcriptional regulator n=26 Tax=Betaproteobacteria RepID=A9ATI3_BURM1 Length = 348 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 69/174 (39%) Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVN 149 ++ + R+ + + + E+ S + + L Sbjct: 175 PLLQIEFACPRPRHAVDHLYFFSGPVQFDCERTLMRFSADYLDAPIRQSKRNLRKFLARA 234 Query: 150 HVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 + + ++S+Q + R L + A +L+ SV TL R LA+EG +FQ++ Sbjct: 235 PGDWIFETFSEQRVCHRVRQYLSEALPDLPVIEQAAEHLHCSVRTLSRHLAAEGTTFQAL 294 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 D++R + A+ + T I+ I + G+ PS F F + TP R+ + Sbjct: 295 KDELRRDIAIQRLTDTQDTIAAIGADIGFDDPSAFHRAFRHWTGSTPGTYRRRA 348 >UniRef50_A1ZQH8 Transcriptional regulator, AraC family protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQH8_9SPHI Length = 355 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 11/167 (6%) Query: 97 VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL 156 V Q+ + +F L++ W+ L+ V A L V LL Sbjct: 195 VYKQLLCEKVYFEQAQNSLVFAWQDLQQPVLT----------ANAQLREHFEQLVKEDLL 244 Query: 157 SYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 + Q + + ++L++P + ++VA L+++ +L R+L EG +F I +D++ Sbjct: 245 TKKPQEWVKKVRQVILNQPINHLPSLHQVAHALHLTPRSLQRKLKHEGHTFLVIANDIQQ 304 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 A+ ++ T +SE+A GY PS F F TP+E +++ Sbjct: 305 QRAMHLLRQTQLNVSEVAYMLGYAEPSVFRRAFKRWTGKTPKEYQQS 351 >UniRef50_C1AVG9 Putative AraC family transcriptional regulator n=1 Tax=Rhodococcus opacus B4 RepID=C1AVG9_RHOOB Length = 326 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 13/272 (4%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKP------LMPALCRIRQGKKVINWETHTLTVDNN 54 + R +L + +R H H + LC + G I ++ +D Sbjct: 58 LSTRQFGDLSLSTVRAHAHSVLRTPAMIGDTDSEDYFLCAVTGGPGRIEQHDRSIWLDKG 117 Query: 55 QIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIE---SFQKLYTVTDQIRNKTSFFLPQ 111 + G F + + ++ +P L+ S + + V Q + S Sbjct: 118 SFAVIDAGQPFRFDF---PQRFEQIVVRVPRPLLLGRMSERDVDRVMAQPVSAASGAGVV 174 Query: 112 NPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLL 171 + L +V + + ++ +L + + + R NLL Sbjct: 175 VSRFLQQLAALDAAVPDAPAAALSASALDMIVTALADTGGTVSPTQQAHTADLHRAQNLL 234 Query: 172 LSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 + + + A L IS+ L + S G + L RL A + +T I Sbjct: 235 KTRLHDENLSITEAAAELGISLRYLQKIFQSTGSTPSEWLLHARLERARMILLSTDITIG 294 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKA 262 ++A G+K S F+ F + I+P + R+ Sbjct: 295 DLASRVGFKDISHFSRSFRTLYGISPGQYRRR 326 >UniRef50_B5JS07 AraC-type DNA-binding domain-containing protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS07_9GAMM Length = 359 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 12/176 (6%) Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVN 149 S ++ + + F + E+I+ + L V + V+L + Sbjct: 194 SEPPYVEEYQRLFDCSLAFDCECTEVIFPLDYLDMPVVQHDP----------VMLDMMDA 243 Query: 150 HVNHLLLSY-SKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 + LL + ++ ++ L P + T VA + S TL RRL+ +FQ Sbjct: 244 YAERLLSEFGQREGVLGDVRRHLTELLPKGEATLEAVASEMACSPRTLQRRLSEADSNFQ 303 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 S+LDD R + A I EIA G+ S F F +TP + R+ + Sbjct: 304 SVLDDTRKDLAQHYIGQPFIDPIEIAFLLGFADQSTFYRAFKRWMGMTPGQYRERN 359 >UniRef50_A4Y0S8 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas mendocina ymp RepID=A4Y0S8_PSEMY Length = 342 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 10/229 (4%) Query: 38 GKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTV 97 G+ + + LT +L+ + + +A + + L++ F L Sbjct: 117 GELRVEQQDDRLT------LLYSPLHPQHPATRMRVLAMMACWVRMMAPLLDDFHLLGVQ 170 Query: 98 TDQIRNK--TSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL 155 + L + ++ R A L L H LL Sbjct: 171 FRHAAPSDLAPYRSVFACPLRFAAADYTIALPRALGDA-PLIPANPPLQQLLRQHAEALL 229 Query: 156 LSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 SL +R LL + + ++AR L++S TL RRLA EG ++Q +L D R Sbjct: 230 ARLPSASLSARVIGLLGEQLAHGEPDRAQLARALHLSERTLQRRLAEEGCNYQQLLADTR 289 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 A ++ P +EIA GY PS F F + P E R Sbjct: 290 RQLAERYLREGRLPAAEIALLLGYSEPSVFFRAFRQWTGLPPGEYRAQQ 338 >UniRef50_Q5YRJ4 Putative transcriptional regulator n=2 Tax=Actinomycetales RepID=Q5YRJ4_NOCFA Length = 351 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 21/230 (9%) Query: 49 LTVDNNQII------LFPCGYEFYIENYPEAGLYL--AEMLYLPIDLIESFQKLYTVTDQ 100 + +++ L P ++ ++ +++L ++L + Sbjct: 125 VEFRPGEVVAWINHELIPADVRTFLVERDVVAIHRVMSDLLGERLNLARAEFACPEPEHA 184 Query: 101 IRNKTSFFLPQNPELIYCWEQLKTS-VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY- 158 R + F + + + ++R Q + V + L+ Sbjct: 185 ARMASVFGVRPRFGSEHTLFAIDPEVLNRPLPQANQPTW------QMCVAQCHELIRRRT 238 Query: 159 SKQSLISRCYNLLL-----SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 ++ + + LL GT T + VAR L +S TL RRL G S++++LD+V Sbjct: 239 ARTGIAAEVRERLLPGSGAMGVGTPPTIDAVARDLNMSARTLRRRLDEAGTSYRALLDEV 298 Query: 214 RLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 R A + + +IA GY + F F +TP R+A Sbjct: 299 RRALAEEMLTAAPLSVDDIAIRLGYAEATPFIHAFKRWTGLTPAAYRRAH 348 >UniRef50_A8ZYY6 Transcriptional regulator, AraC family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYY6_DESOH Length = 343 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 75/222 (33%), Gaps = 5/222 (2%) Query: 41 VINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQ 100 ++ + T +I F E + Y+ + + + Y + Sbjct: 123 ILETKGGTAFFRFREIFDPGKYRRFIHEAHTVGFYYICRDIMKEPLPLTEVRFAYPRPEY 182 Query: 101 IRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSK 160 F + L G + A + +L HLL + Sbjct: 183 ADEYKKIFNCPVIFNAKETQALF----AGRYLEKALPCANVLTKNLYEKECRHLLQDLDR 238 Query: 161 -QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNAL 219 + R L S ++AR +S TL RRLA+EG ++++ VR A Sbjct: 239 FSTTTGRVKQALFSYDNGFPGMAEMARRFNMSPQTLGRRLAAEGTDYKTVSRQVREKRAC 298 Query: 220 SAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + +QT+ PI EIA GY + F F + TP R+ Sbjct: 299 NLLQTSDLPIEEIAARLGYSDTANFYRAFKSWTGKTPLGFRR 340 >UniRef50_B8HZ47 Transcriptional regulator, AraC family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HZ47_CYAP4 Length = 333 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 2/187 (1%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 +L + ++ S + + + + Sbjct: 147 VLLSRRLTGLDIVPLQMGFQHPKPEDVSAYHRLFRSPLAFDHPVNEMRLDAALIQNPLAQ 206 Query: 139 AMGVLLSLGVNHVNHLLLS-YSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLH 196 A L S+ H LL +SL+ LL G + +A+ L + TL Sbjct: 207 ADPGLSSILDRHAEELLARLPQSESLLDSVNRLLSQALRGGDPSLVAIAQQLGYTPRTLQ 266 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R+L G S+ S+LD++R ++ ++ ISEIA G+ S F F ++P Sbjct: 267 RKLQEAGTSYHSLLDEMRRELSIYYLREAQIAISEIAFLLGFSETSAFHRAFRRWMGVSP 326 Query: 257 REIRKAS 263 + R+++ Sbjct: 327 GDFRRSA 333 >UniRef50_Q47XU2 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47XU2_COLP3 Length = 305 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 9/237 (3%) Query: 28 LMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDL 87 + L G+ I + V I+L P G F E E +L+ + Sbjct: 62 HVHYLISTHAGEGKIKLGNNEYLVKPGSIVLLPAGTPFLYELSGEYWEMCWLLLHDCSEY 121 Query: 88 IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLG 147 Q +V I + L Q LI ++ ++ ++ E L + +L Sbjct: 122 KFVHQLHPSVYSSINAE---RLYQTMSLIREFQHGESIYQSDIILRLVEVLVYQIAQTLN 178 Query: 148 VNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSF 206 + SLI R L WT ++A +++S R E G++ Sbjct: 179 MGQQLTKQQQKFH-SLIRRVNKQLQLS----WTVKQLAAEMHMSEPHFFRLCKKEMGMTP 233 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +L RL A ++ T + +IA GY + F RF + ++P RK Sbjct: 234 IKLLTHTRLEYACYLLRYTQYNLDQIADTVGYGDSASFAHRFKKDYGLSPGRWRKEQ 290 >UniRef50_C6LF57 Transcriptional regulator, AraC family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF57_9FIRM Length = 309 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 94/283 (33%), Gaps = 27/283 (9%) Query: 9 LKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE 68 L +++ R + + L I G+ + V N + P G Sbjct: 27 LYVDKYRFAESWIYRESRIPYCMLRYICSGRAKFIVDGKEYIVKENDVFYIPQGSTLACS 86 Query: 69 NYPEAGLYLAEMLYLPIDLI------------------------ESFQKLYTVTDQIRNK 104 E ++++ I + E F+K+Y Sbjct: 87 AL-EKIVFISVRFVDSIQIPGEDMLLKLWNIRQQYYCGAGTEMREWFEKMYQSAISRAMY 145 Query: 105 TSFFLPQNPELIYCWEQLKTSVSRGFSTKIQ-EHLAMGVLLSLGVNHVNHLLLSYSKQSL 163 LI ++ S +Q E + M ++++ L Sbjct: 146 KRLETCGYLNLICAGLARRSGASEEPEETVQSERITMESMINMKYIRKRVLASQKDTDPR 205 Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAI 222 + + + P T K+ +S STL R +E G S D ++ A + Sbjct: 206 VQMVVDYITLHPEENLTREKLCTMTGVSESTLRRLFKAEMGKSIYEFTKDTKMMYAAHLL 265 Query: 223 QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 TT++ ISEI GY+ PS FT RF F ++P+ RK SRE Sbjct: 266 MTTMESISEIGYRLGYESPSYFTRRFRENFGVSPQTYRKNSRE 308 >UniRef50_Q2BN29 Transcriptional regulator, AraC family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN29_9GAMM Length = 348 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 11/185 (5%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 + L + T D N F Q +L++ L ++ G ++ Sbjct: 174 PIKATLTRARPDNPTCWDDFFNCPVEFSAQRNQLVFDRTTLHETLPTGNTS--------- 224 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYN-LLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 L V L + + + L+ P T + V++ L I TL +L+ Sbjct: 225 -LAEQNDKLVEAYLHKMQLNDICGQVRSCLIELMPLGITTMDGVSQALSIPPRTLQYKLS 283 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +G + Q + D++R A +Q + +P ++IA G+ P+ F F TP R Sbjct: 284 QQGTTLQELRDNIREELARQYLQHSRQPFTQIAYSLGFSDPAHFNRAFKRWTGETPTAYR 343 Query: 261 KASRE 265 + + E Sbjct: 344 RRTSE 348 >UniRef50_Q1ZUP8 Transcriptional regulator, AraC family protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZUP8_PHOAS Length = 292 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 65/267 (24%), Positives = 108/267 (40%), Gaps = 27/267 (10%) Query: 15 RMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIE--NYPE 72 H H E V L R QGK + +++N+++L G E N E Sbjct: 36 NWHAHQEFELV------LHRNFQGKSRV--AHFEGQIEHNELLLIGPGVAHSFESINSDE 87 Query: 73 AGLYLAEMLYLPID----LIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR 128 A +++ + LI S +L T+ IR+ ++ L + Sbjct: 88 KNPCEAHVIWFSKEWIANLIYSCAELRTLMPIIRDANKGVRFSTQTAEKVYQHLNS--FD 145 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ----------SLISRCYNLLLSEPGTK 178 + Q + + +L L + + LLSY++ S I++ + + Sbjct: 146 DLTPIGQLAVLIQILDELSADQSHTTLLSYAQSEEKEKPNNDFSKIAQVCKYIDKHYSSD 205 Query: 179 WTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 T K+A Y+Y+S +T+HR S+ S L +RLN+A + + TT++PIS IA G Sbjct: 206 ITLKKLADYMYVSENTVHRWFIQHFNESYISYLTKLRLNHASNLLITTLQPISLIAESVG 265 Query: 238 YKCPSRFTERFHNRFNITPREIRKASR 264 Y S F F I+P RK + Sbjct: 266 YTNRSNFNRSFKKYKGISPSLYRKQFK 292 >UniRef50_A3Y8Y2 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8Y2_9GAMM Length = 357 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 3/202 (1%) Query: 63 YEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQL 122 + F + ++ + + + + S + + + Sbjct: 148 HLFRFLVDEDLSGHVKLTRDFLDESYAPLAVHFAYPEP--DNLSLYQDFFRCPLVFDAPV 205 Query: 123 KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNH-LLLSYSKQSLISRCYNLLLSEPGTKWTA 181 + + + V SL + + LL S +SL+ + + LL P + Sbjct: 206 SQVLIQQTDLERTNQSYNPVTESLAIKLCDEMLLQQDSNRSLVGKVHLALLRTPEKYPSI 265 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 +VA L +S +L RRL S++ I + VR AL +Q + + +IA+ G+ Sbjct: 266 QEVAEQLAMSERSLRRRLTELNTSYKEIFNTVRQELALRYLQDSNLAMEDIAQLVGFSDS 325 Query: 242 SRFTERFHNRFNITPREIRKAS 263 + F F P R + Sbjct: 326 TSFYRSFKKWTGKAPSSYRSNA 347 >UniRef50_D0LBE5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LBE5_GORB4 Length = 342 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 92/270 (34%), Gaps = 13/270 (4%) Query: 1 MLARGKTNLKIEEIRMHKHHEIHRVKPL------MPALCRIRQGKKVINWETHTLTVDNN 54 ++AR L + +R H + + LC I +G+ I + H+ + + Sbjct: 65 IVARQAGELSLSVVRADPHTVVRTPAMIASDPGDDLLLCLITRGRASIVQQGHSGVLSDG 124 Query: 55 QIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFL---PQ 111 F + + ++ +P + V D + S Sbjct: 125 SFGFVDASMPFTVA---GETPFEQVVVRIPRATLAGRLPAAVVDDSLGRSISGTEGIGRV 181 Query: 112 NPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLL 171 L+ + G + + V S+ + S +S +L Sbjct: 182 ASRLLVDLAMHDDRLDEGSWAGVATAVLEVVSASVQQCSTHLSATQQSHTDDLSAIQRVL 241 Query: 172 LSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 L + T V L +SV +H+ ++ G + ++ L RL+ A + + + + Sbjct: 242 LRDIADPDRTLADVGAELGMSVRYIHKLFSASGTTPRAWLYARRLDRARTLLLQSEITCA 301 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIR 260 ++ + G++ S F+ F +F I+P R Sbjct: 302 NLSEQLGFRDVSHFSRAFRKQFGISPGRYR 331 >UniRef50_Q094J0 Transcriptional regulator, AraC family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q094J0_STIAU Length = 657 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 11/188 (5%) Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 ++ + L + F EL++ L + Sbjct: 473 RTRIIPRAVSLRGPAPAYQERYGALFACPVRFQQPVDELLFSALDLARPLVSSSPE---- 528 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTL 195 L +L L +S+ ++L + G + + VAR L +S +L Sbjct: 529 ------LEALFGARAEQLWEETGGDERVSQVRSVLRRQLSGEEPSIGGVARALGMSERSL 582 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R+L+ SF+++L +VR + A + TT ++E++ G+ P+ F +T Sbjct: 583 QRKLSEAHTSFKALLSEVRRDMAREQLATTDIELAELSFLLGFSDPNSLHRAFKRWEGMT 642 Query: 256 PREIRKAS 263 P E R+ Sbjct: 643 PLEYRRKH 650 >UniRef50_A8H057 Transcriptional regulator, AraC family n=2 Tax=Shewanella RepID=A8H057_SHEPA Length = 344 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 11/183 (6%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 + ++L + F + ++ Y L A Sbjct: 169 PIRLELERREPFDSQPFSTLFCCPVKFSAGHNKIFYSNRDLGLPFPS----------ANR 218 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLA 200 L + S Q R + + +A+ ++S L R+L Sbjct: 219 ELALKNDEAIQAYFQSIVSQPFSQRVSKEISIAMTLGNPDRDAIAKAFHMSSRNLQRKLR 278 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 EG SF ++ +R + A + T + EIA G+K PS FT F + ++P + R Sbjct: 279 EEGTSFSEQVEQLRKDLAQKYLATPQLSMLEIAFRLGFKDPSNFTRAFKRWYGVSPLQYR 338 Query: 261 KAS 263 + + Sbjct: 339 QKN 341 >UniRef50_B1SDU2 Putative uncharacterized protein n=1 Tax=Streptococcus infantarius subsp. infantarius ATCC BAA-102 RepID=B1SDU2_9STRE Length = 288 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 83/237 (35%), Gaps = 5/237 (2%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESF 91 L I GK + T + + + P G + + + E+ Sbjct: 54 LHFIVDGKGKFTIDGITTQLKTGDMFILPKG-KVAFYQADGEHPWTYLWVGFSGSKAENI 112 Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 + D ++ +++ + + ++ +L L Sbjct: 113 LSKTQLLDHYFCHSTLESKVLDQIVKLTQFRDQKLDDVTELQLTAE-LYKLLAFLMKEFP 171 Query: 152 NHLLLSYSK--QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQS 208 + + S Q+ I + ++ ++ G +++A+ L ++ S L++ E S + Sbjct: 172 SKAMSDSSILIQNYIKQVKKIIHTQYGNPLKISEIAKKLNLNRSYLYKIFKEETDYSLKD 231 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 L +R+ + + T ISEIA G+ F++ F F +P RKA ++ Sbjct: 232 YLIQIRMEKSADLLTRTTFHISEIANAVGFPDALAFSKAFKKHFGQSPSHYRKALKK 288 >UniRef50_A1U2D8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1U2D8_MARAV Length = 343 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 78/221 (35%), Gaps = 11/221 (4%) Query: 55 QIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPE 114 + ++ + L + + +F K T + ++ F + Sbjct: 114 DFFVAGDEACMVLDTASDDVRRLKHFNECFVQGLITFFKSITDGNFYPSRIEFEHDRELG 173 Query: 115 LIYCWEQLKTSVSRG-------FSTKIQEHL---AMGVLLSLGVNHVNHLLLSYSKQSLI 164 + E L V G F ++ H A LL+L + + K+ ++ Sbjct: 174 QDHVREVLGCEVVFGAEENRLYFPAELLSHASPHAEPELLALHERFASEQVARLEKKDIV 233 Query: 165 SRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQ 223 + ++ + T + VA L I TL RL SF +L D R A + Sbjct: 234 GQVERIIAELLDSGEVTLDAVAERLGIKPRTLRTRLTEAETSFNQVLADFRYRLARQLLA 293 Query: 224 TTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 TT + I EI G+ PS F F +TP E RK ++ Sbjct: 294 TTDESIDEIVYLTGFSEPSTFYRAFKRWSGMTPIEYRKTAQ 334 >UniRef50_P07642 Arabinose operon regulatory protein n=160 Tax=Proteobacteria RepID=ARAC_ERWCH Length = 310 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 8/240 (3%) Query: 31 ALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIES 90 + +G+ I T + ++LFP + P + + +Y + Sbjct: 51 IINLTMKGQGQIFDGDETFFCNPGDLLLFPPKSTHFYGRSPSSDCWYHRWVYFRP---RA 107 Query: 91 FQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF--STKIQEHLAMGVLLSLGV 148 + + + N +L+ +++L ++ + + E L M +L L + Sbjct: 108 YWADWLEWHTKSSGIGRMSLPNNQLLLEFDRLFANIEQTQRSGRRFSEELGMNLLERLLL 167 Query: 149 NHVNHLLLSYSK--QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVS 205 + S K + + S + ++VAR++ +S S L + G++ Sbjct: 168 RAMEEDPQSPQKIMDPRVIEACQFITSNLAGELRIDEVARHVCLSPSRLAHLFREQVGIN 227 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +D R+ A +QTT + I+ I R GY F+ F R ++P + R+ S E Sbjct: 228 ILRWREDQRVIRAKLLLQTTQESIANIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSSE 287 >UniRef50_Q2SDE2 AraC-type DNA-binding domain-containing protein n=13 Tax=Gammaproteobacteria RepID=Q2SDE2_HAHCH Length = 397 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 13/184 (7%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLS------ 145 + ++ + F PE + L + + + L Sbjct: 207 LACWLTGQRVALDEARFNYPEPEHSSEYRHLFYCPLQFNQPDTRIYFHKRYLQLPVIQDE 266 Query: 146 ------LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRR 198 L + + L + S+ L+ + + +A + +S TL RR Sbjct: 267 PSLKEFLKTSPADLLARPDDSNTYTSKIRALVGRDLSQQMPDFEFIASQINVSPQTLRRR 326 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L E SFQ I D++R + A+ + I+EIA + G+ PS F F +TP + Sbjct: 327 LKEENTSFQEIKDNMRRDAAIYYLSRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGD 386 Query: 259 IRKA 262 R++ Sbjct: 387 YRES 390 >UniRef50_A3M2M8 Transcriptional Regulator (AraC family) n=8 Tax=Acinetobacter RepID=A3M2M8_ACIBT Length = 335 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 77/185 (41%), Gaps = 11/185 (5%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 + L I+L S + I F +++ ++ + T QE+ Sbjct: 155 SVFSPLRIELRRSEPEDLETFQSILKAPIVFNAPKDMIVFDTATIEQPLEGANPTLTQEY 214 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCY-NLLLSEPGTKWTANKVARYLYISVSTLH 196 +N L + K+++++R L+ + VA+ L +S+ +L Sbjct: 215 ----------DEIINRYLARFDKENILARVKVKLIEKLSTGDFQQQDVAKSLGLSIRSLQ 264 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 R+L++E S+ +LD R ALS I+ + I+EIA G+ S FT F +++P Sbjct: 265 RKLSAENTSYSELLDQTRHELALSYIKNSSHNITEIAYILGFTDVSSFTRAFRRWTDLSP 324 Query: 257 REIRK 261 R+ Sbjct: 325 IHYRE 329 >UniRef50_A6C2Z3 CheY-like receiver domain n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C2Z3_9PLAN Length = 331 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 96/269 (35%), Gaps = 14/269 (5%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 + H + A+ QG + +D + G + + Sbjct: 63 ARFTSGHFPAGTTTQKHNHAVM--AMHGSLQGPLTLKTPDGDYHLDAGDFCMIGPGVDHH 120 Query: 67 IENY-PEAGLYLAEMLYLPI--DLIES---FQKLYTVTDQIRNKTSFFLPQNPELIYC-W 119 N P +A ++ L D E + + + NP+L + W Sbjct: 121 WSNEGPHTASTVAFLIDLERLGDWPEESGIAEACRELETLVTGVHRISSAGNPDLQHAFW 180 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKW 179 V+ KIQ + V LSL + H+ + S+ + + LLL+ + Sbjct: 181 RMADQLVAEHAHRKIQLTSRLLVFLSLVLEHLAPAVELDSEDDVALQIRRLLLNRVNDRL 240 Query: 180 TANKVARYLYISVS---TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 T +VAR L++S + T+ R + G + +++++ + + I +I+R Sbjct: 241 TIPEVARELHVSPTLAKTVFR--KTYGCGIMAYFNELKIWQSKRMLGNPSMTIDQISRTL 298 Query: 237 GYKCPSRFTERFHNRFNITPREIRKASRE 265 G+ P+ FT F +TP + R + Sbjct: 299 GFSSPAYFTRTFRKLTGVTPSDFRSKRGQ 327 >UniRef50_D2MNX8 Transcriptional regulator, AraC family n=1 Tax=Bulleidia extructa W1219 RepID=D2MNX8_9FIRM Length = 282 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 85/262 (32%), Gaps = 24/262 (9%) Query: 16 MHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGL 75 H HH I +G+ + T + + I N + Sbjct: 24 AHWHHSFE--------FIEILEGEYQCHVSGKTFLAHPGDLCIINRSRIHRILNQ-KKER 74 Query: 76 YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQN-----------PELIYCWEQLKT 124 ++L D ++Y + + + F LI ++L + Sbjct: 75 CRKKVLIFDPDYFIHNPEIYQKYVKPLQEETAFSHMQLKFKSGMGAELIHLIDEIDRLNS 134 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYS---KQSLISRCYNLLLSEPGTKWTA 181 G+ + + + + +H LL + ++ + + T Sbjct: 135 EKPVGYEMETIGLIYLLLRRLYLAHHQQEKLLQENYDLNSTIQRKMTLYIYEHYAEHLTL 194 Query: 182 NKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 K+A+ +S ST R G S L+ RL + ++ + + I++IA E G+ Sbjct: 195 EKIAQAGLVSKSTCIRLFKEYTGKSPIDFLNRYRLEVSSQLLKNSHRSITDIAFECGFSQ 254 Query: 241 PSRFTERFHNRFNITPREIRKA 262 S F +F + +P + R+ Sbjct: 255 ASYFNRQFKKEYGSSPNQYRQQ 276 >UniRef50_B2HYH2 AraC-type DNA-binding domain-containing protein n=16 Tax=Acinetobacter RepID=B2HYH2_ACIBC Length = 336 Score = 140 bits (352), Expect = 6e-32, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 3/188 (1%) Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 LA L +E Y + F + ++ + Q+ Sbjct: 148 LASWLIERRLPLERVHFSYPRPAHADEYDALFFAPVMQFDAPRTEITFAADYLDLPIRQD 207 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTL 195 + L + L+ + SL SR +L S+ G + T N VA LY+S TL Sbjct: 208 EKTLEEFLKAAPAQL--LVKFKNTNSLTSRIREVLKSQIGEEMPTLNDVASMLYLSPQTL 265 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRLA+EG S+Q + D +R + A+ + + ++A++ G+ S F F +T Sbjct: 266 RRRLAAEGKSYQGVKDALRRDAAIHLLLNPELTLEDVAQQVGFSETSTFHRAFKKWTGVT 325 Query: 256 PREIRKAS 263 P R+ Sbjct: 326 PGLYRQLH 333 >UniRef50_B8FH05 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH05_DESAA Length = 338 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 18/240 (7%) Query: 32 LCRIRQGKKVINWETHTLTVDN---NQIILFPC--GYEF----YIENYPEAGLYLAEMLY 82 LCR+ Q I + + +D+ + F G ++ + A ++ A MLY Sbjct: 105 LCRVYQ----IISDEVEVRIDSRDDGDALCFTPFAGRPLPVGASVDAFMAAAVFYARMLY 160 Query: 83 LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGV 142 + ++ + R F +Y Q V A Sbjct: 161 DASLNPVKVEFMHEKWGEGREYERLFQAP----VYFAMQDNAIVFSPQDAHKTLLTANAE 216 Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCY-NLLLSEPGTKWTANKVARYLYISVSTLHRRLAS 201 + V L + L + LL S P + + A+ + IS +L R L + Sbjct: 217 IAMQNDKLVFDYLARCKTERLDQQVRSRLLKSLPLGEPSIETTAQSMGISPRSLQRHLRN 276 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 +G SF ILD+ R + A + I+ ++++A + GY S F+ F F +P ++ Sbjct: 277 QGTSFTEILDETRKHLAENLIRYPHLSVTDVAFQLGYSDSSNFSRAFRRWFGKSPNMYKR 336 >UniRef50_A1TWU6 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TWU6_MARAV Length = 347 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 70/208 (33%), Gaps = 15/208 (7%) Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 IE P G L +L+ + + T + + P+ + Sbjct: 136 DIELGPLQGFVLDAVLFGCVSM----GAQLTGSPVPGTQVLRRGPEPNHFHRFRRSIGVP 191 Query: 126 VSRGFSTKIQEHLAMGV----------LLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSE 174 V G S A + L L + R ++ + Sbjct: 192 VDYGASEDALVIPASQLNLPVQFSNDQLAISSREQCETALKQLKEDAGFACRVRRVIETS 251 Query: 175 PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 +VA LY+S TL RRL E SFQ+++D VRL A + +T +S+IA Sbjct: 252 HPFPPKLARVASTLYVSERTLKRRLQEEEASFQALVDQVRLERARDLLASTTMNLSQIAD 311 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKA 262 GY + FT F ++P R Sbjct: 312 SLGYADAANFTRAFKRWTGLSPSHFRNR 339 >UniRef50_B2HU78 AraC-type DNA-binding domain-containing protein n=14 Tax=Acinetobacter RepID=B2HU78_ACIBC Length = 342 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 8/199 (4%) Query: 70 YPEAGLYLAEMLYLPIDLIESFQKLYTVT-------DQIRNKTSFFLPQNPELIYCWEQL 122 P+ A L L L+ + + + + ++ + E Sbjct: 136 QPKRMFTYATFLMLVHGLMCWLVDQRISLNSIAVRCPKPNDIQDYLVRFCEDIDFNAEIN 195 Query: 123 KTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLS-EPGTKWTA 181 + + + + L N L+ ++ +L LL P Sbjct: 196 QIEFDAHYLDIKVKKDKKALYDFLEQTPQNLLVRFKNENALSVVIRRHLLKLHPAEWPEL 255 Query: 182 NKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 VA+ L IS +T+ RRL EGVS+Q I +++R + A+ + + I +I+ + + P Sbjct: 256 KDVAQQLNISEATVQRRLKHEGVSYQQIKNEIRCDIAIERLSKSNDSIQDISEDLNFHDP 315 Query: 242 SRFTERFHNRFNITPREIR 260 S F F ++P R Sbjct: 316 SAFHRAFKKWTGVSPGAYR 334 >UniRef50_B8FM47 Transcriptional regulator, AraC family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM47_DESAA Length = 277 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 91/253 (35%), Gaps = 7/253 (2%) Query: 17 HKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLY 76 H +E R ++ + +GK+VI+ + ++ + + L G ++ Y Sbjct: 27 HVTNEFSRHVHDGFSIGIVLEGKRVIDQKGASVVIGPKDVFLINPGEPHACKSEDGKHTY 86 Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 + + + ++SF + Q S ++ EL + T V + ST +E Sbjct: 87 FT--ICVEPEALKSFASQISEKAQETPYFSCLAAKDEELNSLIREFMTLVQKSGSTMEKE 144 Query: 137 HLAMGVLLSLGVNHVN---HLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVS 193 + +L + + + + + ++R + + T ++A +S Sbjct: 145 ASLISILSTAILRYGDNPPEIRRISPHVQAVNRAREYIKTHYAENLTLKELAGVACLSPF 204 Query: 194 TLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 R G+S L R+ A + +++ A + G+ S FT F Sbjct: 205 YFQRLFLENVGISPHDFLIQYRIKKAREMLDQGS-SLADAALDVGFTDQSHFTRAFKRVT 263 Query: 253 NITPREIRKASRE 265 I+P + ++ Sbjct: 264 GISPGRYIRNLQD 276 >UniRef50_A4BF80 Transcriptional regulator, AraC family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF80_9GAMM Length = 359 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 20/214 (9%) Query: 52 DNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQ 111 + + L F+ + + AE + L L LY + Sbjct: 153 EAGALALLSLCRSFFGVS------FTAEQIVLNRQL----GALYPAYQEHVQCELIDGAD 202 Query: 112 NPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLL 171 E+ + EQL + L L + L ++ Sbjct: 203 RVEVSFRKEQLDRPLPSANPH----------LSELHDRIIESYLAMLKDDVSTRVVSAII 252 Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISE 231 P T + VA+ L +S TL R+LA G+SF+ +L R AL ++ P+ E Sbjct: 253 RQLPRGNTTQDTVAKALNLSSRTLQRKLADRGLSFRELLVSTRKELALQYLRQNHIPVLE 312 Query: 232 IARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 + + G+ P+ F+ F P + R+ ++ Sbjct: 313 VGYQLGFSEPANFSRAFKQWTGEPPGQYRERWQQ 346 >UniRef50_Q0VNT5 Transcriptional regulator, AraC family n=3 Tax=Gammaproteobacteria RepID=Q0VNT5_ALCBS Length = 337 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 62/189 (32%), Gaps = 11/189 (5%) Query: 88 IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST----------KIQEH 137 + F + T + F P++ + V + + Sbjct: 144 LIKFFRFVTDDAFEPLEVHFGHPRHADQREYERLFDCPVKFDMPSVGLYFDAKLMNLPSA 203 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLH 196 LL L + + KQ L+++ L+ +VA L I L Sbjct: 204 HHEPELLYLHEQLASEQVARLEKQDLVAQVNRLIGELLESGHANLEEVAERLGIKARQLR 263 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RLA G +F ++ D R A + T + I EI G+ PS F F +TP Sbjct: 264 TRLADAGTNFNQLVADYRCRLAKRLLAGTDESIDEIVYLTGFSEPSTFYRAFKRWVGMTP 323 Query: 257 REIRKASRE 265 E RK E Sbjct: 324 IEYRKLKAE 332 >UniRef50_B5JU19 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU19_9GAMM Length = 335 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 12/191 (6%) Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 EA ++L D Y + ++ + + L + Sbjct: 151 EAPQRREVEIWLSHD----EPSYYHHYKDRLPIELVYGKTRDQIRFPGDYLDRPLLMANP 206 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 + Q+ L + + + ++ + G ++ +VA L++S Sbjct: 207 SAAQQ-------AVLFCERELEDYRQREEADWVRQVRRAMVKQEGGYYSLEEVAAVLHLS 259 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 V TL RRL G ++ IL + RL A++ ++ + +A + GY+ P+ FT F Sbjct: 260 VRTLKRRLKEHGANYHRILKEARLERAVALLKEGE-TVQTVAFQLGYQDPANFTRAFRRW 318 Query: 252 FNITPREIRKA 262 +P + R+ Sbjct: 319 TGCSPSDYRQQ 329 >UniRef50_C6D0B3 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D0B3_PAESJ Length = 300 Score = 139 bits (351), Expect = 8e-32, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 92/283 (32%), Gaps = 24/283 (8%) Query: 6 KTNLKIEEIRMHKHHEIHRV-----KPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP 60 + L H I + L + G+ + ++ +++ Sbjct: 16 YSELTPSVHWAQLHQTIRNHEYPLRRIYDFELLYVLDGRITAHLGGTDYSLSTGEMLFIS 75 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPID----------------LIESFQKLYTVTDQIRNK 104 G + L+L + ++E F ++ Sbjct: 76 AGVPHNLNIDSGQALFLGIHFDFFDEFDIVIDQDIIVKDDTVVVEDFCSEALLSGCRPFS 135 Query: 105 TSFFLPQNPELIYCWEQLKTSVSRGFS--TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS 162 + + EL+ E + + + + L + +L++L + +++ Sbjct: 136 DNPVWTPSAELVKEMETVIKEFTLTKPGFEAVCKGLMISILINLQRSRTEAGPHLTTRRE 195 Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSA 221 ++ + + +A+ L I L ++ S G+S + +R A Sbjct: 196 RMTPVVEWIEQHYMEDCSNETLAKLLNIHEDYLGKQFKSVYGMSLNKYVQSIRHREAKRL 255 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 ++ + + +++RE GY+ F+ F+ ++PRE RK + Sbjct: 256 LRESDATVEQVSREVGYEDMHYFSRIFNKWEGLSPREYRKTVQ 298 >UniRef50_B0KIB9 Transcriptional regulator, AraC family n=17 Tax=Proteobacteria RepID=B0KIB9_PSEPG Length = 359 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 6/173 (3%) Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHV 151 + + ++ + F Q L++ L + + + LL Sbjct: 187 PEAWHEHCKVFDAPVLFGQQRNALVFRRSVLDRPMPGRDPRLLAIVIESMHLLR---GQA 243 Query: 152 NHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILD 211 L + ++ LL + +VA L + T+ RRL +G+SF +++D Sbjct: 244 GTLNRPGIVDDVKTQVRALLG---DGYPSLEQVAEQLRLPSWTVQRRLQEQGLSFSTLVD 300 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 VR A +Q + PISE+A GY S F+ F F+++P++ R+A + Sbjct: 301 TVRQELATYYLQQSALPISELALLLGYSEISAFSRAFRRWFDVSPKQWRQAHK 353 >UniRef50_Q0B4N6 Transcriptional regulator, AraC family n=16 Tax=Proteobacteria RepID=Q0B4N6_BURCM Length = 373 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 12/191 (6%) Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 L+ +I F + + + L + Sbjct: 180 GDDFALSRFTMQAASAASVATSTRAPAPRIAGVEPAFGARANSVAFDRGFLDRPLPHANP 239 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLL-LSYSKQSLISRCYNLLLSEPGTKW-TANKVARYLY 189 + +S+ L+ ++ L + PG + + +AR + Sbjct: 240 ----------LTVSMCEQMCVQLVEARRARVGTSEMVRQYLTATPGNVPFSLDDIARLMN 289 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 S TL RRL EG +F+++L R A + + ++E+A G+ S F++ F Sbjct: 290 TSPRTLKRRLQEEGTTFRTLLAQARGAMAETLLGDAHLSLTEVAERLGFSDLSSFSQAFK 349 Query: 250 NRFNITPREIR 260 + + P R Sbjct: 350 RWYGVPPGTYR 360 >UniRef50_A4Y0K0 Transcriptional regulator, AraC family n=8 Tax=Pseudomonas RepID=A4Y0K0_PSEMY Length = 337 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 6/190 (3%) Query: 80 MLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLA 139 + L F L + R ++ ++ + F E Sbjct: 149 VRSCRNRLSRDFSPLLVQLQRPRPADPAPWQAVFRAPLQFDAAESLLR--FPRAAFEQRL 206 Query: 140 M---GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTL 195 L + L S R + L + P + +A ++A+ L++S+ +L Sbjct: 207 DDGNPELAEHNEAVLKRSLEQLQVASYSERVRSCLEARLPDGEPSAERIAQALHLSLRSL 266 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R LA EG S++++L D R AL ++ ISEIA G+ S F F T Sbjct: 267 QRHLAEEGTSYEALLGDTRHALALRHMRDPRCSISEIAYLLGFSDSSSFGRAFKRWTGQT 326 Query: 256 PREIRKASRE 265 P + R SR+ Sbjct: 327 PSQYRDGSRK 336 >UniRef50_Q1N5E6 Putative transcriptional regulator (AraC family) protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E6_9GAMM Length = 340 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 1/141 (0%) Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANK 183 V + ++ A LL L + + +Q LI +L T + Sbjct: 190 MVFDSCALSVESDHAQPELLKLHEQLASEQVAKLEQQDLIHDVQRVLGELLDSQAITLDA 249 Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA L ++ L L+ G +F ++ + R A + T + I +I G+ PS Sbjct: 250 VAERLGMTQRYLRSALSQAGTTFNQVVAEYRCMLAKHLLMKTNETIDQIVYLTGFSEPST 309 Query: 244 FTERFHNRFNITPREIRKASR 264 F F +TP + RK ++ Sbjct: 310 FYRAFKRWTGLTPLDYRKQAK 330 >UniRef50_B7RNE6 Transcriptional regulatory protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RNE6_9RHOB Length = 294 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 89/251 (35%), Gaps = 14/251 (5%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA 73 I H+H ++ +V I G + + + + ++ P P+ Sbjct: 51 IAPHRHAQLAQV-------FFIEAGSAKATADGQSFDLRDGMMLFVPAQVVHSFAFAPQT 103 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 + P+ ++ S + + ++ F LI L ++++ + Sbjct: 104 QG---IVQSFPLSILTSIGPVSGDIARALSR-PFVGRPAQALIAQMALLDDALAQNGPFR 159 Query: 134 IQEH--LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 Q LA VL + + + ++R L+ G WTA A + +S Sbjct: 160 AQIAVGLAHAVLSMTASLNDSPAGNGPAPDGRLARLDRLIAQHQGQNWTARDYAAEMTLS 219 Query: 192 VSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 L R + GVS + ++ + A + T ++EI G+ PS F+ RF + Sbjct: 220 TGHLSRLCRAAKGVSASAYIEATTVQEACRLLAFTQLSVAEIGYRLGFGDPSYFSRRFKS 279 Query: 251 RFNITPREIRK 261 TP R+ Sbjct: 280 VQGQTPSVYRQ 290 >UniRef50_A6GTF7 Putative transcriptional regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GTF7_9BURK Length = 340 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 2/179 (1%) Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 +L + + + + Q+ + + QL+ + L Sbjct: 162 QELPQQLKIEWPFDAPAWAHEYQRIAQHNS--FGFSQLRVVLGSTLVNSPSLAADDEALQ 219 Query: 145 SLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGV 204 L + L + +L R L G T +A ++ T R L +EG Sbjct: 220 RLLRDCDLQLQRLQAGGTLAQRVRMQLQQSEGHMPTLQAMAAKENLTERTFMRHLQAEGT 279 Query: 205 SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 SFQ +LD+VR A + T + IA GY+ S F+ F TP++ R Sbjct: 280 SFQQLLDEVRQERACWMLAHTDSTVEAIAYALGYEDASNFSRTFKRWCGQTPKDYRHQH 338 >UniRef50_Q9EYV5 HTH-type transcriptional regulator gadX n=60 Tax=Bacteria RepID=GADX_ECO27 Length = 274 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 98/243 (40%), Gaps = 3/243 (1%) Query: 26 KPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAE-MLYLP 84 L + K ++ N ++F + ++ E + ++ L L Sbjct: 3 PLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIQVDKCVENFVLVSRDTLSLF 62 Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 + +++ ++ + ++ + QL + + ++ +++ + LL Sbjct: 63 LPMLKEEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLRKRALIFALL 122 Query: 145 S--LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 S L LLL+ + ++ +R ++ + +WT ++A L +S S L ++L E Sbjct: 123 SVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE 182 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 G S+ +L + R+ AL I I +A GY S F F N + +TP E ++ Sbjct: 183 GTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242 Query: 263 SRE 265 S + Sbjct: 243 SAQ 245 >UniRef50_B7RUG5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUG5_9GAMM Length = 187 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRR 198 L + L S+ QS+ + ++ P ++A+ L++S TL R+ Sbjct: 60 DPELARVNDEQTQAYLDSFVVQSISRGVVDKIVEHLPDGPPNQQQIAQALHVSNRTLQRK 119 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L EG SF +L D RL A + + + E A G+ PS F+ F + P + Sbjct: 120 LKDEGTSFMDLLQDTRLQLARKYLSHPNRSVVETAYMLGFSEPSTFSRAFKRWTGVAPAD 179 Query: 259 IRKASR 264 R + R Sbjct: 180 FRDSHR 185 >UniRef50_A0Z3Z2 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3Z2_9GAMM Length = 343 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 61/183 (33%), Gaps = 1/183 (0%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 + + + + L + F I + V + Sbjct: 148 IWRCMKMAAPSALEPLKVEMAAPQPDNQHFETAMGCKIAWSQNRTAMVFDKSQLLEPWQM 207 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHR 197 ++ +++LL S + + LL + + +A+ L++S TL R Sbjct: 208 RNTEIIRANEPMLDNLLKSLRTGDIAGKVRWQLLDALDKELPSEEAIAQALHMSPRTLQR 267 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL +E S+ ++ R+ A + + +E+ G+ S FT F TP Sbjct: 268 RLKAENTSYGEVVQQTRMQLAQQLLASPDISATEVGLACGFSDASAFTRAFKRWTGTTPS 327 Query: 258 EIR 260 + R Sbjct: 328 DYR 330 >UniRef50_A4VH68 Transcriptional regulator, AraC family n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VH68_PSEU5 Length = 346 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 14/191 (7%) Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 + + L + + Y + F + L++ +L S++ Sbjct: 168 KPGFNPLQVALHRPMPREGAEPYE---TLFRAPVSFGVPHGFLVFDKAELLQSLAGSCPE 224 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYN-LLLSEPGTKWTANKVARYLYIS 191 L + V L K +I+ ++ P T +KVA L +S Sbjct: 225 ----------LAQVSDTIVIGYLARLDKNDVITSVKQKIIEFLPDGDCTRDKVANALCMS 274 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 +TL +L+ FQ +LD+ R + A S ++ +P++EI G+ S FT F Sbjct: 275 PTTLQLKLSQRSTHFQQLLDETRKDLACSYLRQVTRPVTEITFLLGFSDTSNFTRAFKRW 334 Query: 252 FNITPREIRKA 262 ++P R+ Sbjct: 335 TGLSPTNFRQQ 345 >UniRef50_Q1ZVW8 Putative transcriptional regulator, AraC/XylS family protein n=3 Tax=Vibrionaceae RepID=Q1ZVW8_PHOAS Length = 292 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 54/270 (20%), Positives = 99/270 (36%), Gaps = 23/270 (8%) Query: 11 IEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENY 70 ++E H H + + + + + + +IL IE+ Sbjct: 25 VKEFSWHYHQKEFELLIHRNF-------RSRCHIGHYQGDFEQASMILIAPNVPHGIESI 77 Query: 71 --PEAGLYLAEMLYLPIDLIE----SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 P+ Y +++ D I S Q+L V ++ L +KT Sbjct: 78 STPDTKDYETIVVWFKQDWIANMMFSCQELRKVDSLLKRAEKGLLFSPETTQKVITIVKT 137 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSL---------ISRCYNLLLSEP 175 + F + + L + + LLS++ +S I R + Sbjct: 138 IDEKHFDPINLLANLIHIFEVLCQDKSSQTLLSHNVESKNHDHCNKEKIERLCAFIDQHY 197 Query: 176 GTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIAR 234 T VA ++ S ST+HR +F L +RLN+A + ++ +PIS +A Sbjct: 198 AEPLTLEYVANFICTSESTIHRLFEQHFNETFIQYLKKLRLNHASELLVSSSEPISHVAE 257 Query: 235 ENGYKCPSRFTERFHNRFNITPREIRKASR 264 + GY+ + F +F N+TPRE R+ + Sbjct: 258 QVGYRNQANFNRQFKQYKNMTPREYRRTYK 287 >UniRef50_A4BIK9 AraC-type DNA-binding domain-containing protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BIK9_9GAMM Length = 271 Score = 138 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 82/250 (32%), Gaps = 15/250 (6%) Query: 17 HKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLY 76 +E+ R+ P + L G I E ++ + + P E + Sbjct: 34 RPPYEVERMDPSIHTLLFTSSGTGHITTEHGEQAIEPGSMTVIPAHTPARFEIEGDRWDM 93 Query: 77 LAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE 136 +L + + + V + F L + + + + Sbjct: 94 CWFLLLPAMHWNQWMPDVAEVRPTGQAPAVFHLCHVIDQERY-------LDASYPKASFQ 146 Query: 137 HLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLH 196 LA + L+L N +S + + WT +VA Y S + Sbjct: 147 KLASYIELNLKANQ-------PETPDRLSAAFAQVEQSLHKPWTVGQVANLCYYSEPHFY 199 Query: 197 RRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 R G S + I+ +R++ A ++ T P++E+A G+ F+ RF ++ Sbjct: 200 RLCQERFGKSPKQIIRQLRMDRARQLLEQTDWPLAELAGRLGFSDQFNFSNRFKRETGLS 259 Query: 256 PREIRKASRE 265 P E R E Sbjct: 260 PSEYRIKHAE 269 >UniRef50_UPI0001C356F7 AraC family transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C356F7 Length = 268 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 87/273 (31%), Gaps = 22/273 (8%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 ++R K + + H H + G I V+ II Sbjct: 5 ISRTKRSYEFHMAESHWHTHYE--------FYYLYSGHCKIFINHTLYYVEPGDIIFLKP 56 Query: 62 GYEF--YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 G + P + + ++S ++L + + + Sbjct: 57 GEIHRTTYHSSPVNER---VTISFDGEYLDSMKELCGEENVEYIFRNSKVTVPNGNRSRV 113 Query: 120 EQLKTSV------SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSK--QSLISRCYNLL 171 E+L + GFS +++ +L+SL + + I + Sbjct: 114 EELIRRIEYEETGQDGFSPLMKKGCFYELLVSLSRCQEAETDHGRLEIGEETIEAAAKYI 173 Query: 172 LSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPIS 230 T +VA ++S + R+ + G ++ L ++R+ A + + ++ Sbjct: 174 YDHYQNPITLEEVAELSHMSPAYFSRKFKAVTGFGYKEYLTNIRIREASRLLLHSACSVT 233 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 EIA G+ + F + F ++PR RK Sbjct: 234 EIADRCGFGDGNYFGDAFRKAKGVSPRAFRKMQ 266 >UniRef50_UPI0000F30067 putative transcriptional regulator AraC/XylS family protein n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F30067 Length = 194 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 60/196 (30%), Positives = 85/196 (43%), Gaps = 6/196 (3%) Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 + N P+ Y A ++ + + ++ NP L Q Sbjct: 1 MRNIPDQEEYFALLIEFDFEDFNDLPQNAG-----TSQNYVQGQLNPLLESALHQFID-F 54 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 S + +L + + + +SL R L+ T+ TA +A Sbjct: 55 SLVAPPSAFKFRKRELLELIYYSGYTAIAKLNMNKSLSERVQTLISYHLSTELTAEFIAA 114 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 L++S STL R+L SEG S Q I + VRL + L IQTT I IA E GY+ SRFTE Sbjct: 115 QLFMSSSTLRRKLKSEGNSIQDIRNRVRLGHGLHLIQTTNNSIGNIAFECGYQSQSRFTE 174 Query: 247 RFHNRFNITPREIRKA 262 +F N F ITPRE+RK Sbjct: 175 QFKNLFGITPRELRKT 190 >UniRef50_C4Z204 AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR n=2 Tax=Clostridiales RepID=C4Z204_EUBE2 Length = 277 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 87/241 (36%), Gaps = 11/241 (4%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESF 91 + + G+ + + +++ P G G++ ++ + E Sbjct: 35 IFYLSSGECTSFIDHNIYKFGKGDLVIVPSGCLHRTTYN-GKGMHERIVISFRNEATEWI 93 Query: 92 QKLY--TVTDQIRNKTSFFLPQNPE--LIYCWEQLKTS--VSRGFSTKIQEHLAMGVLLS 145 Q + + +P+ ++ ++L S + + +LL Sbjct: 94 QNQTGKELMENCMKPGVVNIPEKRRDYVVALLDKLIFENDSPDELSPAFIKVGLIELLLF 153 Query: 146 L--GVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA-S 201 + N+ +++ + +I + + VA +S S L ++ + Sbjct: 154 IIRCKNYEENVIKEIDVDNRIIQEVATYIYEHYADNLSLEYVADKFNLSRSYLSKKFKTA 213 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 G F+ + +VR+ NA + + T K I++IA E G+ + F + F I+P + RK Sbjct: 214 TGFGFKEYIINVRIQNACNLLLETNKSITDIAFECGFNDSNYFGDAFRKAKGISPHKYRK 273 Query: 262 A 262 Sbjct: 274 N 274 >UniRef50_Q1YQ09 Probable transcriptional regulator n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=Q1YQ09_9GAMM Length = 346 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 22/211 (10%) Query: 64 EFYIENYPEAGLYLAEM---------LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPE 114 +EN + + A ++ E L +I N F + Sbjct: 141 RHEVENVIGSWVCYARQFLHFDHWDSIWFEHSAPED-PALLADYQEIFNCEVLFDQPSSG 199 Query: 115 LIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLI-SRCYNLLLS 173 + L + + A G LL + + H LL + + N+L Sbjct: 200 VRIREALLDEVLPQ----------ANGELLEMLLAHATKLLAGLDQSQRTTDQVKNILRL 249 Query: 174 EP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEI 232 ++ +A L IS TL R+L+ EG ++ +L+++R A+ ++ T + I Sbjct: 250 MINQQPPSSEMIAEKLGISSRTLQRKLSEEGTHYKDVLNELRYELAVYFLKNTELTLDNI 309 Query: 233 ARENGYKCPSRFTERFHNRFNITPREIRKAS 263 A E GY F F T R A Sbjct: 310 AYELGYAEARSFYRSFKQWTGETAGCFRAAH 340 >UniRef50_B4WYI1 Transcriptional regulator, AraC family protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WYI1_9GAMM Length = 340 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 17/238 (7%) Query: 41 VINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQ 100 + LT +I L P +E YP + + D++ +F+ + + Q Sbjct: 96 QFGVKYQALTYLYGEIALVPGEQTTALELYPIPLPPEVSRILIDRDMVGTFKLINDIQTQ 155 Query: 101 IRNKTSFF-----LPQNPELIYCWEQLKTSVSRGFS----------TKIQEHLAMGVLLS 145 + P+ + + I+ + Sbjct: 156 LNLDLKPVEVWMPYPRPAHAEAFEDYFGCPIRYDQPYCKAVIRNQDMGIRMPGYNKMAQD 215 Query: 146 LGVNHVNHLLLSYSKQ--SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 + + +L L R L + TA +VA+ I T R+L+ E Sbjct: 216 MYREQCDAMLARREAPTADLGGRVAAYLNLFVRSFPTAEQVAQAFGIPERTFRRQLSKEN 275 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 FQ I+D VR + A ++ + + ++EIA GY + F F +TP R+ Sbjct: 276 RPFQGIMDQVRKDKARRYLEDSERSVAEIAELLGYSESAAFVRAFERWTGVTPARHRR 333 >UniRef50_B2JSH9 Transcriptional regulator, AraC family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JSH9_BURP8 Length = 354 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 97/260 (37%), Gaps = 13/260 (5%) Query: 12 EEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYP 71 + I H++ + G + L + I+LF F E P Sbjct: 96 QHIWDRTEHDVKTKPDEDIVALLLESGSGKMQQAGRKLVMGVGDIMLFDGARPFRHEVIP 155 Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 ++ ++ +P LI S ++ ++ N L+ + +++ Sbjct: 156 DS----IILVRMPRSLIRS---HFSAVEKFVNMKIADGKSIQPLLSGLMREAYALTEETP 208 Query: 132 TKIQEHLAMGVL----LSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVAR 186 + HLA + ++L + + + SY + L + +++ + ++A Sbjct: 209 LLARIHLANAFINAISVALEIQSASEVNESYEGRVLFEKALSIIDARIDDQALNVAEIAS 268 Query: 187 YLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTT-VKPISEIARENGYKCPSRFT 245 L++S TL R A EG + L + RL + +Q +++IA + G+ S F+ Sbjct: 269 ALHVSDRTLSRIFAREGTTPSQTLWNRRLQKSYRLLQENVALQVTQIAFQCGFSDLSHFS 328 Query: 246 ERFHNRFNITPREIRKASRE 265 F F P +I K ++ Sbjct: 329 RSFKRVFGSAPSQILKQRKD 348 >UniRef50_C6LDG4 Transcriptional regulator, AraC family n=3 Tax=Clostridiales RepID=C6LDG4_9FIRM Length = 369 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 81/242 (33%), Gaps = 14/242 (5%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYP------EAGLYLAEMLY--- 82 + +++G I + + I + P G I E ++ E L Sbjct: 128 IIFVKKGTGRIQTGRNMQEARSGDIFVMPPGTLHAIYAAAGYNMEYENIIFEVEFLGGGA 187 Query: 83 ---LPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLA 139 + + + + + Q + E+L ++ RG+ ++ L Sbjct: 188 ADVCDKEYLVPLASGQLLQPAVFSPVDAGYKQISACLRRAEELCSARERGYELGVKAALL 247 Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL 199 +L L + + + L R + + T +A S S R Sbjct: 248 ELLLYLLRMCPEAPERDTPDMERL-KRVLQRIEQDYAKPLTVPDMAAVCGCSSSHFMRWF 306 Query: 200 AS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 G S + L++ RL A ++ T I IA G++ S F +F R+ +TPR Sbjct: 307 KRMTGTSPLAYLNERRLAAAAENLRETDDKILVIAENAGFENLSNFNRQFKKRYGVTPRA 366 Query: 259 IR 260 R Sbjct: 367 YR 368 >UniRef50_A3WY00 Transcriptional regulator, AraC family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WY00_9BRAD Length = 345 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 87/247 (35%), Gaps = 20/247 (8%) Query: 22 IHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEML 81 H++ M +C +G + T T +D + + Y F +E L L + Sbjct: 107 YHQLATPMMEICFKEEGSTAVWIVTPTHDLDIDDRL-----YRFIVEFQMAVHLSLHRNI 161 Query: 82 Y---LPIDLIESFQKLY---TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQ 135 LI+ + + + + L G Sbjct: 162 MGPAFKPALIDYALRRPHDDGSGTAFFDCPILYDKPENRFTFDAAWLDRRPDYGN----- 216 Query: 136 EHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTL 195 L L L + L L + L+L+ ++A+YL +S +L Sbjct: 217 -ELTYAELRQLCDGLLKQLKL---GAGVAGEVRGLILANLSMPIEFKRIAKYLNMSERSL 272 Query: 196 HRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNIT 255 RRL EG SF+ + D+++ A+ I+ T + EIA G+ + F F N T Sbjct: 273 RRRLQEEGTSFRQLADELKAQIAIKYIRDTDLSVEEIAFALGFGDAASFRHAFRRWTNAT 332 Query: 256 PREIRKA 262 P++ RK+ Sbjct: 333 PQDYRKS 339 >UniRef50_A6F6Z7 Probable transcriptional regulator n=1 Tax=Moritella sp. PE36 RepID=A6F6Z7_9GAMM Length = 354 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 67/182 (36%), Gaps = 10/182 (5%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 L + + + +L QI F + L+ + L + + + Sbjct: 170 LEVHLQRVAPAPELIDHYQQIFACPVLFAQSSNSLVLSRDNLNIPLRQPDHS-------- 221 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANK-VARYLYISVSTLHRRL 199 +L +L ++ + S + ++++ T VA L +S TL R+L Sbjct: 222 -LLQTLELHAAGQVSALEGTHSFSVQVHDIIRILLSKGITRKDMVAAQLNMSERTLQRKL 280 Query: 200 ASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 E S+Q +LD+ RL+ A + + I EIA G+ F F TP Sbjct: 281 QQEQTSYQKLLDEARLSLAQQYLTKSKAGIDEIAIMLGFSETRSFFRSFKLWTGQTPNVY 340 Query: 260 RK 261 R+ Sbjct: 341 RE 342 >UniRef50_A5Z9N2 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z9N2_9FIRM Length = 293 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 19/281 (6%) Query: 3 ARGKTNLKIEEIRMHKHHEIHRVKPL---MPALCRIRQGKKVINWETHTLTVDNNQIILF 59 + + V L I++G+ ++N T TV+ ++ Sbjct: 14 KHTPNDFPYNTYLCSIPLDFKSVNLHWHNEVELIVIKKGQGLVNVNLVTYTVNAGDVVFV 73 Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNP------ 113 G I + + + E + L++S I+ S L P Sbjct: 74 FPGQLHSI-SQKDYSIMEYENILFKSSLLKSSGYDLCNDKFIQPLLSGNLNIYPVINSNF 132 Query: 114 -------ELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL-SYSKQSLIS 165 LI ++L + ++ +L L + +N + S I Sbjct: 133 DFHDSLYSLINEIDKLCDKRPYAYQLAVKSYLFQIFYLLISNCGLNQIKPISKKALEKIK 192 Query: 166 RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQT 224 + + + ++A + + S S + G+SF L+D RL A + T Sbjct: 193 TILSYVAEHFQDNISIEEIAGHCFYSKSYFMKFFKETMGMSFVQYLNDYRLEVAAKLLTT 252 Query: 225 TVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 T I IA G+ S F F ++ ITP + RK +R+ Sbjct: 253 TSDDIINIAINTGFDNLSYFNRCFKKKYGITPGKYRKDARD 293 >UniRef50_A0Z3K7 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z3K7_9GAMM Length = 340 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 15/197 (7%) Query: 65 FYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 I + + L E Y F + + + LK Sbjct: 149 VTILRIASQNEFRPRTVSLARPFPEDEASHYE---DFFGCDVLFGAPETSISFDSQLLKL 205 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT-ANK 183 + L + K +R N L+ T + + Sbjct: 206 PLVGADPQ----------LAQSYDQLTEQYIAKLEKADFPARVRNELVRLLPTGVSGKDA 255 Query: 184 VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSR 243 VA L +S TL+ RL G +F+ +LD+ R A + P++EIA G+ + Sbjct: 256 VASVLCVSTRTLYNRLEEAGTTFREVLDETRKLLAEDYLTKG-LPVNEIAYLTGFSDTAN 314 Query: 244 FTERFHNRFNITPREIR 260 F+ F ++P R Sbjct: 315 FSRAFKKWTGLSPMTYR 331 >UniRef50_D0I5P8 Transcriptional regulator AraC family n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I5P8_VIBHO Length = 293 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 92/247 (37%), Gaps = 14/247 (5%) Query: 27 PLMPALCRIRQGKKVINWETHTLTVDNNQIIL--FPCGYEFYIENYPEAGLYLAEMLYLP 84 L P++C + Q KK + + ++ E + + ++ Y+ L + Sbjct: 41 VLQPSICFVLQAKKRVATGQQAYVYSADSYLINSVTRPVEASLLDVTDSHPYVGFSLNID 100 Query: 85 IDLIESF-----QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRG-----FSTKI 134 ++ + + ++ + P PE+ +L ++ + I Sbjct: 101 QQMVGQLMMEMTRWQKEMYSAPQSGFTQSAPITPEISNIASRLLGLLNDEMDKEILAPSI 160 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 L VL G + + + +++ + I+ + + T ++A +S ST Sbjct: 161 CRELYYAVLKGPGGGLLRNCVSNHTGANRIAPVVHYIEQNFERNLTIEEIASVAGMSAST 220 Query: 195 LHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 LH VS + +RL+ A S + ++E+ GY PS+F+ F F Sbjct: 221 LHDHFKQVTTVSPMQYVKSLRLHKARSMLSVG-YQVAEVCYGVGYSSPSQFSREFKRYFG 279 Query: 254 ITPREIR 260 +TP E R Sbjct: 280 VTPSEAR 286 >UniRef50_C4ZF37 L-rhamnose operon transcriptional activator n=4 Tax=Clostridiales RepID=C4ZF37_EUBR3 Length = 291 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 86/280 (30%), Gaps = 21/280 (7%) Query: 3 ARGKTNLKIEEIRMHKHHEIHRVKPLMPA---LCRIRQGKKVINWETHTLTVDNNQIILF 59 + + V L I++G I+ + V ++L Sbjct: 14 THVELTFPYNTYLCSIPLDFSGVPLHWHDDMELIYIKKGCGHISVDFKEYHVTAPSLVLI 73 Query: 60 PCGYEFYIENYPEAG-LYLAEMLYLPI-----------DLIESFQKLYTVTDQIRNKTSF 107 G I+ Y + Y + L + D + + Sbjct: 74 LPGQLHSIDQYMDESMEYENIIFSLSMLLPGKYDYTKEDFLTPLLAGRFTVPTVFTPVYP 133 Query: 108 FLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR- 166 + I +++ ++ +G+ I+ L + N +L + + + Sbjct: 134 YYEDVVAPIDACDEICKTMPQGYQLYIKSKLYEFFFVL--DNRCRNLTKPLKSKKTLDKM 191 Query: 167 --CYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQ 223 + + K + +A S S R G SF L D RL A +Q Sbjct: 192 KVVLKYVENNYADKISIADIADVAGFSESHFMRYFKETMGTSFVDYLKDYRLTMAARLLQ 251 Query: 224 TTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 ++ + I+ E G++ S F F + +TP + RK S Sbjct: 252 SSDSSVLSISGEVGFESLSYFNRAFKKHYGMTPLQYRKGS 291 >UniRef50_Q1DD76 Transcriptional regulator, AraC family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DD76_MYXXD Length = 348 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 73/221 (33%), Gaps = 20/221 (9%) Query: 60 PCGYEFYIENYPEAGL-YLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC 118 P G ++ P L Y + L + T SF P +L Sbjct: 126 PDGSGTFVYGIPGEPLAYGRHASEFGLALFVHVGRQLTEHPWNPRHVSFAHPAPADLRPL 185 Query: 119 WEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS----------------YSKQS 162 + V+ F L+L V + +LLS Sbjct: 186 EQHFG--VTPAFDAGRNALTLDAATLALRVVDADPVLLSVLERAAGTPAAEPPSVPRTPP 243 Query: 163 LISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSA 221 + + + L + VAR L++S TL RRLA SFQ +D VR A Sbjct: 244 FLQQVRDALRASLRNGAPQMGDVARQLHVSPRTLQRRLAEHATSFQDEVDAVRRELAFDY 303 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 ++ +SE+A GY S F F +TPR R+ Sbjct: 304 LRDAHLGVSEVAFLLGYSELSTFDRAFKRWTGMTPRVWRER 344 >UniRef50_A6EZ51 Probable transcriptional regulator n=1 Tax=Marinobacter algicola DG893 RepID=A6EZ51_9ALTE Length = 334 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 91/251 (36%), Gaps = 18/251 (7%) Query: 19 HHEIHRVKPLMPALCRIRQGKK---VINWETHTLTVDNNQIILFPCGYEFYIENYPEAGL 75 I + + + ++ +D + ++ + + G Sbjct: 97 RQSIRCYRLFSDDIVIELDTRGDGVELSITHRHPELDPDNFLV----EWLLMVWHRLIGW 152 Query: 76 YLAEMLYLPIDLIES-FQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKI 134 + + L + + + + FF L + L V+R Sbjct: 153 LIGRKIVLSHAIFQHDLPGHFDEYRFVFPCQCFFNRDRNSLFFSHNYLDMPVTRTPG--- 209 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVS 193 + + + N L+ + SL +R +L + + T ++A L+++ Sbjct: 210 ------ELDRFIEKSPRNLLIWTDEDDSLTTRVRQILENVDDERLPTLEQIAGQLHMTAY 263 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TL R+L +EG S+Q I D++R + A+ + +SEI+ + G+ P F+ F + Sbjct: 264 TLSRKLKAEGSSYQKIKDNLRRDQAVIMLTRQNLTVSEISSQLGFTEPGAFSRAFKHWTG 323 Query: 254 ITPREIRKASR 264 ++P RK + Sbjct: 324 LSPLAYRKQDQ 334 >UniRef50_A9BZN3 Transcriptional regulator, AraC family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BZN3_DELAS Length = 338 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 1/184 (0%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMG 141 +L + + + + + L E + Sbjct: 154 WLTRRDVRPLAVEFMAEAPAPSHEAAYRAAFGLLPRFGEDANRFLLSEADLLAPIPTHNP 213 Query: 142 VLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLA 200 LL+L V L + + +R + + P + VA L ++ TL RRL Sbjct: 214 ELLALHEKLVETELDHLGQAGVGARVRHEIARLLPQGEPRREDVASLLGLTDRTLQRRLQ 273 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +E S+Q +LD+ R AL + + ++E+A G+ S F + P + R Sbjct: 274 AEDTSYQQLLDETRRELALQYLGEPRRSLAEVADLLGFVDQSNLFRACRRWFGMPPGQYR 333 Query: 261 KASR 264 + R Sbjct: 334 QQLR 337 >UniRef50_B7RUA5 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RUA5_9GAMM Length = 354 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 3/191 (1%) Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKI 134 + + ++ ++ +L L S + Sbjct: 159 RFYSWLIG--REMPLQAVQLRASAPASTQHYEKLFGCPVAFDMDNSGLVISRQLLQHPIV 216 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVS 193 Q ++ L L + + + ++L ++ +L+S P TA+ A L +S Sbjct: 217 QSEASLREFLRLAPYPLVKRDVPGNLKTLSAKVEQILVSAGPERLPTASGAASQLNMSPR 276 Query: 194 TLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 TLHRRL +EG SFQ + DD+R A+ + I IA G++ S F F Sbjct: 277 TLHRRLTAEGTSFQQLKDDLRRELAVQYMHRDELSIDAIAAVMGFQDNSAFYRSFKKWTG 336 Query: 254 ITPREIRKASR 264 I+P + R+ + Sbjct: 337 ISPGKFREQLQ 347 >UniRef50_A7AA81 Putative uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AA81_9PORP Length = 287 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 20/267 (7%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 + R + E HKH I + +++G +++ E +++ N++++ Sbjct: 28 VFRFVSFRPFETFGPHKHLRIE--------INYVKKGNCILHLENESISFSENEMMVICS 79 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQN--------P 113 E E E L ++ F + + F +N Sbjct: 80 NVEHTFEAGSEDTT--LMQLEFLPEVFSRFNPDGHGQMKDLAPVTIFSEENRLIKIVNNV 137 Query: 114 ELIYCWEQLKTSVSR-GFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLL 172 ++ +++ +++ + + LL L +++ L + + + + Sbjct: 138 RIMRAVQRIVNEMNQKSKYYQYLVVMYYAELLILIYRYLDEAYLPICTNDSLKKAISYIR 197 Query: 173 SEPGTKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISE 231 + T + VA + L + + +S L+ +R+N A+ ++ T + E Sbjct: 198 LNYQSDITISDVASQTGVGERYLRKLFSQYLNLSPLDYLNQIRINKAIELLRNTEMSVKE 257 Query: 232 IARENGYKCPSRFTERFHNRFNITPRE 258 + G++ P F+ F + I+PRE Sbjct: 258 VCFACGFQSPQYFSRIFKQQMGISPRE 284 >UniRef50_C4FY02 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY02_9FIRM Length = 282 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 93/270 (34%), Gaps = 12/270 (4%) Query: 4 RGKTNLKIEE--IRMHKHHEIHRVKPLMPALC-RIRQGKKVINWETHTLTVDNNQIILFP 60 G T+L+ +E I+ + +++++ P + I GK + + H + NQ + Sbjct: 10 YGLTDLQFDECGIQQFEPYQVYQYTVYQPYIIHWIASGKGSLEVDNHCYPLTANQGFILR 69 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 G + + + +E F + + D + F + + Sbjct: 70 RGQQVKYYAD-GKEPWRNYWIGFSGQRLEEFLQFTQLADAHCIQ---FQDEGQCQAIIQD 125 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL----SYSKQSLISRCYNLLLSEPG 176 ++S+ M + L H+ + L S S + + Sbjct: 126 ICHFNLSQTQDANTFYWQMMKIFDFLYHAHLELVSLSAPRQQSNSSPAEVAAAYIYANYA 185 Query: 177 TKWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 T +A+Y+ +S S L R S + L + RL A + + I IA Sbjct: 186 RPITVESIAQYIGMSRSALFRLFRQHYRQSPKQFLMETRLRQARQLLVESQDSIKTIAAS 245 Query: 236 NGYKCPSRFTERFHNRFNITPREIRKASRE 265 GY F++ F F ++P + R + E Sbjct: 246 VGYSDQLVFSKIFKKTFGLSPSDYRDCAGE 275 >UniRef50_Q2S7F1 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7F1_HAHCH Length = 327 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 84/267 (31%), Gaps = 22/267 (8%) Query: 3 ARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCG 62 A G + + + P + + P Sbjct: 76 ALGYAAMASASYEQALQLLVKYYRVQAPKAYF------ELRTRDGYYELACESSFTLPER 129 Query: 63 YEFYIENY------PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELI 116 E L M + I L + + +I F ++ Sbjct: 130 PWVTTEFLISSIYTSTEFLLSGRMQGVEIHLSYAEPPHLELYREIFQAPVRFRQTFTGIL 189 Query: 117 YCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG 176 + + + SL + + L R +L + G Sbjct: 190 IPFSVARQPLPSADPMA----------ASLFTKRCESIQHDERDEQLPRRVKEMLYAGAG 239 Query: 177 TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 + ++A L++SVSTLHR+LA +G +++++L +V+ AL ++ + + EIA+ Sbjct: 240 EFPSQTELASRLHMSVSTLHRKLAEQGAAYKALLAEVKKELALQHLRDSRLTVDEIAQLL 299 Query: 237 GYKCPSRFTERFHNRFNITPREIRKAS 263 G+ S F F TP E RK S Sbjct: 300 GFSDASNFRRAFVGWTGETPSEFRKRS 326 >UniRef50_Q0VN05 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VN05_ALCBS Length = 342 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 7/206 (3%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLY-TVTDQIRNKTSFFLPQNPELIYC 118 P G + + L L + + + Sbjct: 138 PLGIAHDFIIEAMLVGLVFMIEQLLESLPQGLEIHRCGPAPAWLMALRKEVGVPVCFDQE 197 Query: 119 WEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS---LISRCYNLLLSEP 175 L +S + + + LA + ++ + + + R + L P Sbjct: 198 ENALVFPLS---ALEARPRLADPQVAAIARQQCEMEFRQWRTEDEGVMARRIRSALQDHP 254 Query: 176 GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARE 235 + +A L +S TL R L G+S++ + D+ R A + + ISE+A Sbjct: 255 APLPSLQGMAERLAVSARTLKRHLQQAGLSYRQLQDEERYQQARRLLVQSENSISEVAYR 314 Query: 236 NGYKCPSRFTERFHNRFNITPREIRK 261 GY + F++ F +TP R+ Sbjct: 315 LGYNDVANFSKAFKRWSGMTPSAYRE 340 >UniRef50_C8WRN2 Transcriptional regulator, AraC family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRN2_ALIAD Length = 274 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 84/232 (36%), Gaps = 6/232 (2%) Query: 36 RQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLY 95 G V+ ++ V ++LFP G + + P+ G E L + L + + Sbjct: 44 LDGHAVVTTSGASMVVSAGDLLLFPAGEPYELRIEPDEGDRPGEHLSTDLYLFCNGPWVD 103 Query: 96 TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL 155 + K L + +Y W QL R E L +L +L + + Sbjct: 104 KWWNHRPRKRHLRLALHENCVYLWRQLIEEYRRPGKPD--EELCDYLLRALCLTFDKYGY 161 Query: 156 LSYSKQSL---ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILD 211 + R + + + +A + +SVS + G + L Sbjct: 162 DPKRATPVPIAAERIRAYIERHAAEDLSLSDIADAVGLSVSRVVHIFKEAYGQTVVQYLQ 221 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +VRL A ++ + + EIA G+ S F F ++ I+PRE R+ + Sbjct: 222 NVRLQMACDRMRFSNLNLEEIADRCGFHSYSYFYRVFRQKYGISPREFRQRA 273 >UniRef50_C4ZBG0 Transcriptional regulator, AraC family n=5 Tax=Clostridiales RepID=C4ZBG0_EUBR3 Length = 279 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 79/240 (32%), Gaps = 8/240 (3%) Query: 29 MPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLI 88 + I GK T+ L E + + + Sbjct: 42 HYLIHYIISGKGRYTVNGSVHTLTPGDAFLVYPNTEVIYQAD-AQDPWEYTWVGFTGSDA 100 Query: 89 ESFQKL--YTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSL 146 + + +T + S +L++ ++ T + + L+L Sbjct: 101 ATILRATDFTKAHPYIHSVSNGNEIKRQLMHIYDARGTEFENALEMTGRLY----TTLAL 156 Query: 147 GVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVS 205 V+ S S + + + + T +A Y+ +S S L R S GVS Sbjct: 157 FVSAATSKPPQNSANSYVQKGIEYISANYSYPITVEDIASYIGLSRSHLFRSFQSILGVS 216 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 + L D R+ A ++ + I+ IA G+ F++ FH ++P+E R ++ Sbjct: 217 PKEYLTDFRIKQACYLLKHSSLSITAIAGSIGFDNSLYFSKTFHKIKGLSPKEYRSKYKK 276 >UniRef50_P72171 Ornithine utilization regulator n=7 Tax=Pseudomonas aeruginosa group RepID=ORUR_PSEAE Length = 339 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 7/226 (3%) Query: 39 KKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVT 98 + + + + + + F E + +L + ++ + + Sbjct: 118 ELELVLDDGRAELRAVESMPLGAASVFAAEGLM--ATLYSIACFLVGEPLQDVRVGFAYP 175 Query: 99 DQI-RNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS 157 + + E W L LA + + LL + Sbjct: 176 PPAHARRYAEVFGVAAEFEQPWHWLSMPSEYLERPMA---LANPATVQMCEQQCEALLAT 232 Query: 158 YS-KQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 ++ L++R LLL+ PG + AR L+ S +L R L+S G ++Q +LDDVR Sbjct: 233 LDVQEGLLTRVRRLLLARPGDFPDLEQAARELHTSGRSLRRHLSSLGTTYQQVLDDVRKR 292 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 AL + TT P+ EIA G+ S F F P + R+A Sbjct: 293 LALQYLTTTQLPLYEIALLLGFNDSSNFRRAFRKWTGKLPSDYREA 338 >UniRef50_Q21JI5 Transcriptional regulator, AraC family n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JI5_SACD2 Length = 344 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 10/157 (6%) Query: 107 FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR 166 F ++Y L V + +L L + + + + Sbjct: 197 LFEQPYNGIVYDTACLDLPVVQNEEN---------LLNFLRTAPYHLVTEDPAHIRFADK 247 Query: 167 CYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTT 225 N+L + + ++++VA L++S +TL R+L ++ S+Q + D+ R+ A + Sbjct: 248 VRNILKKDVSASMPSSDEVASQLHMSTTTLRRKLQNDNTSYQRLKDECRMEAAFHLLNCA 307 Query: 226 VKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 +EIA++ G+ PS F F TP E R Sbjct: 308 DLSNNEIAQKLGFDEPSAFFRSFKKWTGQTPGEYRAR 344 >UniRef50_B5J4U5 Transcriptional regulator, AraC family protein n=3 Tax=Rhodobacteraceae RepID=B5J4U5_9RHOB Length = 300 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 14/259 (5%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFP---CGYEFYIENY 70 +R + P LC I QG K I +LT Q ++ IE Sbjct: 40 VRQDTPTAVFS-TVYKPMLCLILQGTKEIGSNDKSLTAHAGQSLIVSHILPVVSRIIEAG 98 Query: 71 PEAGLYLAEMLYLPIDLIESFQK--LYTVTDQIRNKTSFFLPQNPE-----LIYCWEQLK 123 PE Y+A + L + L+ S + + +DQ + S L + + ++Q + Sbjct: 99 PEQ-PYVALVFPLDLSLLRSLASEVVPSFSDQSSDPFSICLCDTDDALEGTMQRYFDQCE 157 Query: 124 -TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTAN 182 + + + + M +LLS + LL S S + + + S K Sbjct: 158 TQQTRQFIAPITKREIHMRLLLSPHAQILRKLLWHESTASRVFQATENIQSNLADKIIVG 217 Query: 183 KVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 ++A+ +S S R + G S D+RL A +Q + IS+IA GY+ Sbjct: 218 ELAQSAGMSSSAFFERFKAVTGTSPLQYQKDLRLLRARGELQASNAKISDIAFGVGYESS 277 Query: 242 SRFTERFHNRFNITPREIR 260 ++F+ F +F TPR+ R Sbjct: 278 AQFSREFSRKFGRTPRQDR 296 >UniRef50_B8KM41 Helix-turn-helix-domain containing protein, AraC type n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KM41_9GAMM Length = 337 Score = 136 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 73/185 (39%), Gaps = 11/185 (5%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 E+ L +DL + F + + + E L+ + G + Sbjct: 161 EICPLRVDLTCPATTHPEAYREALRAPIRFDAEIGCMHFDKETLRQPLPLGAPDIARAT- 219 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHR 197 + + Q + S+ LL++ P K V+ L S STL R Sbjct: 220 ---------DRITEQYMETLDPQKVASQVRQLLIALLPSGKADQELVSSQLNRSASTLQR 270 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 +L SEG+S++ +L+ + + A + ++ +++IA G+ S F+ F +++P Sbjct: 271 QLKSEGLSYRDVLESTQRSLAETYLRDKKYSLAQIAYLLGFSEQSNFSRAFKRWTSMSPG 330 Query: 258 EIRKA 262 + + + Sbjct: 331 QYQDS 335 >UniRef50_C0EGN7 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EGN7_9CLOT Length = 326 Score = 136 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 52/255 (20%), Positives = 88/255 (34%), Gaps = 18/255 (7%) Query: 22 IHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG------- 74 +H+ L + +G V ++ +T+T+ +++L E + Sbjct: 71 LHKHTFYE--LMYVYRGSCVNHFNENTITIQEGEMLLLNPNTAHCPETLTDQDCVFNIMF 128 Query: 75 -----LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQL-KTSVSR 128 Y ++L L SF I FFLP + + + Sbjct: 129 RQNFFQYSLDLLLKDNTLFSSFFMECMFQSSIARDYLFFLPGKASADTIERLIVECFEKQ 188 Query: 129 GFSTKIQEHLAMGVLLSLGVNHVNHL-LLSYSKQSLISRCYNLLLSEPGTKWTANKVARY 187 I + L + + L N N + + LI + + P T KV+ Sbjct: 189 SCYETITQSLLVELFAYLARNSDNSFSYPKNNHERLILKIITYIQESPAE-ITLQKVSEQ 247 Query: 188 LYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 S + L R + G +F I+ D RL A ++++ I +IA GY S F + Sbjct: 248 FQYSTAYLSRMIKQYTGKNFSEIVRDCRLTKAKYYLESSSLSILDIALILGYNDVSHFYK 307 Query: 247 RFHNRFNITPREIRK 261 F TP E RK Sbjct: 308 VFKQEIGCTPTEYRK 322 >UniRef50_C3K2A2 Putative putative AraC-family regulatory protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K2A2_PSEFS Length = 384 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 12/183 (6%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 L + ++ + + L + L + + A Sbjct: 206 FSLSRFCLSKQPPPIPDNVKVLGCAPSYAANSNSLAFNRSFLSLPLPQ----------AN 255 Query: 141 GVLLSLGVNHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL 199 V +S+ L+ + + + + L + + ++ L++S TL RRL Sbjct: 256 AVTVSMCEQMCTQLMQRRIAHAGMTALVQHYLNTPDNGMPDLSSISELLHVSPRTLKRRL 315 Query: 200 ASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 EG +F+ +L DVR NA++ ++ ++EIA G+ S F++ F I+P + Sbjct: 316 KEEGTTFRKLLADVRSRNAINLLKDG-HNLTEIAERLGFSDLSSFSQAFKRWHGISPSQF 374 Query: 260 RKA 262 + Sbjct: 375 SQQ 377 >UniRef50_D1N8D6 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8D6_9BACT Length = 301 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 87/259 (33%), Gaps = 8/259 (3%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFY 66 +EE R + + GK + + + +++ P G + Sbjct: 41 YPFTVEETRRSNRFLFREEFCRYMIISLVLDGKLLYKHDGRNFLLAPGMVLVIPAGTSYS 100 Query: 67 IENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSV 126 + + G Y ++ L ++S F L+ QL+ + Sbjct: 101 FDTFT-TGGYRKLVVELAGPHLDSICTTLG----FDRMMMFCPEDTAPLLATIRQLEELL 155 Query: 127 SRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVAR 186 + + + LA G L L L S L+++ L S +VA Sbjct: 156 GQQARATMPDLLAAGYKLLL--QLAGELRGSRKNSPLLAQAQQKLESALDRPLAMEQVAA 213 Query: 187 YLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFT 245 L +S++ L+R E S + R+ A +Q + I EIA + GY FT Sbjct: 214 ELGMSLTNLNRIFRQELHTSPLKYRNTCRIELARELLQHSTLSIKEIAAKAGYCNQFYFT 273 Query: 246 ERFHNRFNITPREIRKASR 264 + F TP E R+ R Sbjct: 274 QEFRRCTAQTPTEFRREYR 292 >UniRef50_A3V8S6 Virulence regulating protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8S6_9RHOB Length = 337 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 76/233 (32%), Gaps = 11/233 (4%) Query: 39 KKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVT 98 ++ Q +L EF + P+ + +I + + Sbjct: 97 TGIMRMAKFKSLFGPMQFVLSRSASEFTVRVTPDVATAPLPGTFSSPQIIYLHAQANALA 156 Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGV---------- 148 S LP + + V + + A ++ + Sbjct: 157 RHPIRPLSVCLPLPQDERERLADVFGQVPQHGDAMLTYARADARMIFISANTELWEATEA 216 Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQ 207 + ++ L R +L T+ V L +S STL RRLA EG +FQ Sbjct: 217 DLQAQAMIQSKGLPLSERVRATMLEAFSITEPNIAHVCGRLKLSRSTLLRRLADEGATFQ 276 Query: 208 SILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +LD+ R + A+ + + +IA GY+ P+ F F TP+ R Sbjct: 277 MLLDETRKDLAIRYLLKSDMNNQQIAHLVGYRDPNAFQRAFRKWTGTTPQAFR 329 >UniRef50_Q0VLF5 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VLF5_ALCBS Length = 336 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 12/219 (5%) Query: 56 IILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPEL 115 I+L F I P+ L D+ S ++ Q + P++ Sbjct: 117 ILLCEEEDAFGITFDPDPIPPHLRQFLLERDMATSLNLAREISLQGAEFKAIEFTGTPDV 176 Query: 116 IYCWEQLKTSVSRGFSTKIQEHLA------------MGVLLSLGVNHVNHLLLSYSKQSL 163 + ++ F + L + + + + Sbjct: 177 DAAALKALCGIAPTFGAGSNRIMVNRAGASRPFSGYDPALTRMLEQQCQQRMDTVESSGI 236 Query: 164 ISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQ 223 + LL E G + N +AR L +S +L R+L EG S++ ++++ R AL + Sbjct: 237 AGKVRQKLLGELGLGASLNDMARDLALSTRSLRRKLEQEGTSYRDLVEEERRQLALQLLG 296 Query: 224 TTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 T I E+A Y F F +P R+ Sbjct: 297 NTTMKIEEVAAHLAYTDAGGFVRAFRRWQGCSPSTYREN 335 >UniRef50_B3C7N6 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C7N6_9BACE Length = 292 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 89/258 (34%), Gaps = 12/258 (4%) Query: 14 IRMHKHHEIHRVK--PLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYP 71 H + + G ++++ + NQ + P + Sbjct: 40 YYPHAENHFREREKGTNENVFIYCESGCGWVSYKGEKYILTKNQAFILPANEQHAYGAD- 98 Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 E + L+ + + F + + +L +E++ ++ G+S Sbjct: 99 EVNPWSIYWLHFCGEGVAMFSSIIGKAISLEESDKSRYDDRFQL---FEEMYQNLEMGYS 155 Query: 132 TKIQEHL---AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYL 188 + E++ M L SL + + + I + + + K T +A+++ Sbjct: 156 PENLEYVSFCLMHFLASLKYINQFREIKKVRETDFIQKSISFMKENMENKITLEDIAQHV 215 Query: 189 YISVSTLHRRLASEGVSF--QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTE 246 S S + S+ + +++ A S +Q + I EIA GY F++ Sbjct: 216 GYSASHFSALFSER-TSYAPMEYYNQLKIQRACSFLQFSDLKIKEIAFRLGYYDQFHFSK 274 Query: 247 RFHNRFNITPREIRKASR 264 F+ ITP+E R+ + Sbjct: 275 AFNKEMEITPKEYRRRYK 292 >UniRef50_P68913 Uncharacterized HTH-type transcriptional regulator Rv1395/MT1440 n=15 Tax=Mycobacterium RepID=Y1395_MYCTU Length = 344 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 75/217 (34%), Gaps = 24/217 (11%) Query: 59 FPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQK------------LYTVTDQIRNKTS 106 P + AG+ +A + L + L + + + Sbjct: 138 LPADVRGFFIERDIAGI-IATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVHDV 196 Query: 107 FFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS-YSKQSLIS 165 F + + + + + A L + + + L+ ++ + + Sbjct: 197 AFGRAHNRVHFPRAMFDEPLPQ----------ADRHTLEMCIAQCDVLMQRNERRRGITA 246 Query: 166 RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTT 225 + L + G T VA L + TL RRLA EG SF+++L + R A+ ++ Sbjct: 247 LVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNV 306 Query: 226 VKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + +++ GY S F+ F + + P E + Sbjct: 307 GLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRR 343 >UniRef50_B5JY44 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JY44_9GAMM Length = 337 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 14/176 (7%) Query: 90 SFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST--KIQEHLAMGVLLSLG 147 + ++I F + E + +S+S + A +L L Sbjct: 170 AEPDYIEQYERIFQAPVLFNQSECHIRVPSEVMNSSLSGASPQFNQSFAEKAQVLLSRL- 228 Query: 148 VNHVNHLLLSYSKQSLISRCYNLLLSEPGTKW-TANKVARYLYISVSTLHRRLASEGVSF 206 S SL + + S+ G + +A L ++ TL RRL EG S+ Sbjct: 229 ----------PSDSSLAAEVVQAIESKIGYAVFSMQDIAGELNMTQRTLQRRLKEEGTSY 278 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 + D VR A ++ + ++ IA G+ P+ F F ++P E RK Sbjct: 279 AQLRDSVRFRFAEEYLRDSSMDMATIAANLGFSEPANFYAAFKRWQGMSPGEYRKR 334 >UniRef50_B7VPE5 Similar to transcriptional regulator n=5 Tax=Vibrionales RepID=B7VPE5_VIBSL Length = 344 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 14/237 (5%) Query: 35 IRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGL--------YLAEMLYLPID 86 I+ G K + +V + L IEN E G +L+ ++ L + Sbjct: 107 IKSGFKYLRLNGPIFSVK---LFLDSEQAVIQIENTLEVGDLLPFCSEYFLSSIVSLFEE 163 Query: 87 LIESFQKLYTVT-DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL-AMGVLL 144 L ++T+ R + + + +EQ + S Q L L Sbjct: 164 LTGHELDIHTLALPYARPNYTKLYDERFQCPVIFEQNYCELRFDVSVLSQTLLTHDAATL 223 Query: 145 SLGVNHVNHLLLSYSKQSLIS-RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 + ++ + + L++ + + G+ ++A S TL R L + Sbjct: 224 KRYLASCQSIVETLDSEHLLTNQIKTIFYQTAGSFPNIEQLADEFGCSSRTLRRELVTHD 283 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 S+Q +L +VR+ A + T I +I GY P+ F F N TP + R Sbjct: 284 SSYQILLTEVRVELAKELLLGTTMSIDDIGERLGYSDPANFRRAFKGWLNKTPAQFR 340 >UniRef50_A6GLT9 Transcriptional regulator, AraC family protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GLT9_9BURK Length = 329 Score = 136 bits (342), Expect = 8e-31, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 1/124 (0%) Query: 140 MGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRL 199 LL + + L + + + +LL G T VAR L IS +L RRL Sbjct: 206 DPHLLRVFEDQCARQLRQRQVEGVTGQVRRILLGPMGLLSTLEDVARSLSISPRSLRRRL 265 Query: 200 ASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 A EGVSF +LD R A + +T + E+A GY + FT F +N +P E Sbjct: 266 AEEGVSFSDLLDAERQQLAEQLL-STQMKLDEMALHLGYGDTASFTRAFRRWYNCSPGEY 324 Query: 260 RKAS 263 R+ Sbjct: 325 RRNQ 328 >UniRef50_D0IVW4 Transcriptional regulator, AraC family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IVW4_COMTE Length = 364 Score = 136 bits (342), Expect = 9e-31, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 2/168 (1%) Query: 97 VTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLL 156 + + + + + + + + A V L + + Sbjct: 191 AFPRPSFAADYPILFPAPIDFDGKHSQITFGAELGKIRPVRSAADVRTFLARAPRDWIFT 250 Query: 157 SYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 SY + ++ + LL ++ G T + V+ L++S TL R+L EG+SFQ I D++R + Sbjct: 251 SYHEHAIRLKVRELLHADLGR--TLDDVSSRLHMSSRTLIRKLQEEGLSFQGIKDELRRD 308 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 A+ + ++EI+ G+ P+ F F + +TP R A R Sbjct: 309 LAILNLVRNDVSLAEISYALGFSTPAVFHRAFRHWTGMTPGTYRTAQR 356 >UniRef50_Q2SAU6 AraC-type DNA-binding domain-containing protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SAU6_HAHCH Length = 338 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 72/226 (31%), Gaps = 9/226 (3%) Query: 44 WETHTLTVDNNQIILF-----PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVT 98 T + ++ +IL P E + A + + ++ Sbjct: 112 VGHTTYRLSSDDVILSWDSCSPDLSRHIAEENIASWTTFARWITGAYVSPTLIRFQHSRP 171 Query: 99 DQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSY 158 IR F L + + ++ + +L L LL Sbjct: 172 SDIREHERLFQC---SLEFSCDSIEVHFPSVYLDLPLRQHDPAMLALLDEYADRLLLQLN 228 Query: 159 SKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 + + + L + + K AR L +S L RRL EG S+Q ILD+ R Sbjct: 229 PEANFSDKVKAALTNLLQAGDISLQKTARTLNLSARALQRRLQEEGCSYQQILDETRREL 288 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 AL I +SEI G+ S F F TP + R+ Sbjct: 289 ALRQISDERLDLSEITFFLGFADQSAFQRAFKRWTGRTPGQYRREQ 334 >UniRef50_B7H2M9 Bacterial regulatory helix-turn-helix protein, AraC family protein n=5 Tax=Acinetobacter RepID=B7H2M9_ACIB3 Length = 348 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 10/194 (5%) Query: 72 EAGLYLAEMLYLPIDL-IESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF 130 +AG +L E + I+L ++ + Y Q T F ++ Y + L + Sbjct: 163 QAGQFLREHDFSDIELSVDWSEPSYHKAYQHLLPTIHFNQPTNQIRYKKQLLDLPIKMAD 222 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLY 189 ++ +L L S + + L P T +++A L Sbjct: 223 PIAFKQ--------ALAQCEAEQLRFSEQIKDICLTVKAELNLNPQVGYPTFDEIANRLN 274 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S TL R L+ G S+ +L++V+ A + + + I EIA GY P+ FT F Sbjct: 275 MSSRTLRRHLSQVGSSYLHLLEEVQQKEAENLLLNSDMEIQEIALYLGYIQPTNFTRAFK 334 Query: 250 NRFNITPREIRKAS 263 TP RK Sbjct: 335 KWTGQTPITFRKNQ 348 >UniRef50_Q1N5F0 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N5F0_9GAMM Length = 339 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 16/191 (8%) Query: 78 AEMLYLPIDLIESFQKLY---TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKI 134 A + L I + + + +F + + ++ + + Sbjct: 150 ALAVKLSPHAIHFTHEQEADKSEFEVFFECPVYFSSTFTGIEFDTRIIEMPLMGHSPDLL 209 Query: 135 QEH--LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISV 192 + A ++L N N ++ + SL + T VA +L +S Sbjct: 210 KVLTGYADLIVLKKQKNAANEVVTQFVIDSLQHKV-----------PTLQDVAEHLGVSA 258 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 L R+ +G +F++I+DD+R A + + T ++ IA+ G+ S F F Sbjct: 259 RNLQRKFKQQGTNFKTIVDDIRKEYAFTYLLQTNYKMTYIAQILGFSEQSVFQRAFKRWT 318 Query: 253 NITPREIRKAS 263 +TP E R Sbjct: 319 GMTPGEYRIHH 329 >UniRef50_B7RX05 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX05_9GAMM Length = 335 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 15/187 (8%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 + P IE ++ L+ Q +L+Y ++E L Sbjct: 161 DFTGAPPANIEKYEDLFRCPLYFN--------QTNDLLYFDSTCLAWSVVHTQHSLREFL 212 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHR 197 L + + +L ++ ++ + + ++ L +S TL R Sbjct: 213 RTAPYQMLIME------NDPAGNNLSAQVKAMIGHDFSEGFPSFEMISSALSMSAPTLRR 266 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL EG +FQ I DD R A + I+E+A + G+ PS F F TP Sbjct: 267 RLKREGTTFQQIKDDSRCEAAKLCLNRHDLSINEVAMQMGFTDPSAFHRSFKKWTGQTPG 326 Query: 258 EIRKASR 264 + R R Sbjct: 327 QFRSQLR 333 >UniRef50_D0SI20 AraC-type DNA-binding domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI20_ACIJU Length = 353 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 78/187 (41%), Gaps = 2/187 (1%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 + M +L I + + + + + + + + EQ K + + Sbjct: 156 SLMCWLSDQRISFHRMSFRCHQPVEIQ-DYRVRFCENIEFNAEQNKIEFDAHYLKHKIKK 214 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWT-ANKVARYLYISVSTLH 196 + L N ++ ++ SL + L+ +P ++W +A+ + +S +T+ Sbjct: 215 DKQALNEFLKHAPYNLIVRFKNENSLSLQIRRQLILQPPSEWAELKDIAQQMNMSTATIQ 274 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL EGVS+Q + +++R + A+ + T I I+ + + PS F F ++P Sbjct: 275 RRLKQEGVSYQQLKNNIRCDIAIERLSKTNDSIQSISDDLNFHDPSAFHRAFKKWSGVSP 334 Query: 257 REIRKAS 263 RK S Sbjct: 335 GSYRKTS 341 >UniRef50_Q1N693 AraC-type DNA-binding domain-containing protein n=1 Tax=Bermanella marisrubri RepID=Q1N693_9GAMM Length = 342 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 84/195 (43%), Gaps = 18/195 (9%) Query: 71 PEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGF 130 P A A+ + D ++++L+ F + EL + + L R Sbjct: 164 PMAKFTCAKFAHSKPDYAAAYEELFPC-------KVSFESEFCELRFDAQMLNLKPKRRN 216 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT-KWTANKVARYLY 189 + L N+ N +L K+S+ + L+ ++ A +VA+ L Sbjct: 217 PHIGRATL----------NYANQILSRLFKRSISDKVRRLVEVNIADSEFDAEQVAKALN 266 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S TL+R+L ++ S+ I++ V+ A ++TT P++ IA + G+ S FT F Sbjct: 267 MSRQTLYRKLKNDNSSYSDIVEAVKKEKAFKLLKTTSTPLTVIAYDLGFSELSAFTRAFK 326 Query: 250 NRFNITPREIRKASR 264 ++P E R+ ++ Sbjct: 327 RWTGLSPAEFRRQNQ 341 >UniRef50_B0U9X7 Transcriptional regulator, AraC family n=10 Tax=Proteobacteria RepID=B0U9X7_METS4 Length = 364 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 11/177 (6%) Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 S + + FF ++ EL Y L+ + LA + Sbjct: 179 AHFSYSAPEHAAIYADYLGCPCFFEQEHCELHYDSAILEQ----------KPQLAHRLTS 228 Query: 145 SLGVNHVNHLL-LSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEG 203 +L + + L+ + + + Y +L+ PG VA+ L ++ TL RRL +E Sbjct: 229 ALLQDACDTLIGKANASAGVAGEVYQILMRSPGVFPDMEDVAQTLRMTSRTLRRRLDAEQ 288 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 VSF +I+DDV + A ++ T + +IA G+ + F F P E R Sbjct: 289 VSFSAIIDDVHRSLATEYLRMTSMSLEDIALLVGFSDAANFRRAFKRWTGKNPGEFR 345 >UniRef50_C0EAY1 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAY1_9CLOT Length = 329 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%) Query: 16 MHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGL 75 KH H + + QG+ + T+ I+L + E Sbjct: 65 GFKHQAFHNHDCFE--MIYVYQGELENEMPANRCTLHQGDILLLNPNVWHNVYRNDEKD- 121 Query: 76 YLAEMLYLPIDLIESFQKLY----TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 +A + +P +L +++ + + + P++ +Y V Sbjct: 122 -IAFNIAIPKELFQTYLSNILEDNQMFSFFFSDYLYRDPKSERYLYFQNSGDPWVREPVE 180 Query: 132 TKIQEHL-------------AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLL--SEPG 176 ++E+ + + L H ++ + Y ++ + Sbjct: 181 RMVREYFSKQPNWNSMTLACLIALFSQLSRTHQEESKIAAYENDRNRIVYEMVAYVNAHM 240 Query: 177 TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 T N++A +L S L + L G +F +L + R+N A ++ T PISEI Sbjct: 241 QDVTLNQMAEHLKYSPGHLSKLLRKSGKNFSQLLLECRMNKAGYYLEHTNLPISEIIERI 300 Query: 237 GYKCPSRFTERFHNRFNITPREIRKASR 264 GY F + F F+ TP E RK+ R Sbjct: 301 GYTNEFHFYKLFRQSFHTTPTEYRKSVR 328 >UniRef50_A0YC38 Transcriptional regulator OruR n=3 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0YC38_9GAMM Length = 359 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 72/195 (36%), Gaps = 11/195 (5%) Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 LY ++ + L S V + F + +L L T V Sbjct: 171 GNSLYRRQLDGAELQLTFSKPASMAVYQSVFGLEIIFEAERNQLFLPQHLLDTPVKTA-- 228 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSY-SKQSLISRCYNLLLSEPGTKWTANKVARYLYI 190 I +H+ +L S S + + LLL G ++VA L + Sbjct: 229 -NIADHIVF-------HQQCEGILQSLTSGDKITTEVRRLLLQSAGDFLNISQVAERLNM 280 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S TL RRL +E VSF+++ ++VR A + T +++IA Y F F Sbjct: 281 SERTLRRRLKTESVSFRTLFEEVRYLMATEYLSKTDLTVADIAHLLSYSETVNFRRAFIG 340 Query: 251 RFNITPREIRKASRE 265 +TP E R+ E Sbjct: 341 WSGMTPSEYRQQQAE 355 >UniRef50_B8KNS6 Transcriptional regulator, AraC family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KNS6_9GAMM Length = 248 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 11/192 (5%) Query: 82 YLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS---------- 131 + + + F P+ P E+ K + Sbjct: 55 EFWRSSMTTLLEHIMGQRFPSTAMYFPYPEPPHTAALQEKFKCDLYFDAPVMEWHFDPAC 114 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISR-CYNLLLSEPGTKWTANKVARYLYI 190 + A L +L N +L+S Q+ + R +LL + + A +AR L + Sbjct: 115 LSLPCANASRFLATLCSNFCESVLVSGEGQTRLQREIRLILLGKIRQQPVALDIARELGL 174 Query: 191 SVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN 250 S +L+RRL E +FQ +LDDVR + A+ + +T P+ E+A G+ PS F + F Sbjct: 175 SKRSLYRRLQEENATFQGLLDDVRASVAIQFLSSTSLPVEEVAHRVGFADPSNFRKAFRR 234 Query: 251 RFNITPREIRKA 262 +TPR R A Sbjct: 235 WTGVTPRSYRSA 246 >UniRef50_C7PD66 Transcriptional regulator, AraC family n=3 Tax=Bacteroidetes RepID=C7PD66_CHIPD Length = 286 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 55/269 (20%), Positives = 101/269 (37%), Gaps = 19/269 (7%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGY 63 +G + + K H H V L I +G+K + + + + P G Sbjct: 21 QGTHSWAAYSVYTQKAH--HEVYTPHTILNLIVRGQKRMYDGRVIHQLQAGDVFIIPAGS 78 Query: 64 EFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLK 123 E + Y + + LP +I + Q + + + W+QLK Sbjct: 79 LLCSEIPGQRYGYESINIELPDAIINKY-----SLPQTSSLPTPVGATSLTASSAWQQLK 133 Query: 124 TSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTA-- 181 + + F+ H A + ++ + + QS+I +P T T Sbjct: 134 NELLQQFTVARSIH-AGPSQAQIAAMALSLMGQTAQGQSIIRMLQLATAVQPATMHTLGK 192 Query: 182 --------NKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEI 232 ++AR+ +S +TL RR V+ + + + RL + ++T PI++I Sbjct: 193 ELFQMGELEEMARHACMSKATLKRRFRQVYDVAPMNWIWEKRLEQSAFLLRTQTDPIADI 252 Query: 233 ARENGYKCPSRFTERFHNRFNITPREIRK 261 A +G++ S F F N F +TP RK Sbjct: 253 AYRSGFENISHFYRLFRNAFGMTPVAWRK 281 >UniRef50_B5JRR7 Transcriptional regulator, AraC family, putative n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRR7_9GAMM Length = 339 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 10/169 (5%) Query: 98 TDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS 157 ++ F Q ELI+ E L + S + ++ + VL L Sbjct: 178 YREVFGPNLVFQAQRNELIFETEWLDIELPSA-SPEFRKLSSQKVLSELSKL-------- 228 Query: 158 YSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLN 216 S+ +L++R + G + KVA L + TL RRL E V++ ++ D V Sbjct: 229 PSQDNLVARVVRCIEDHIGHSVLSMQKVADKLNTTPRTLQRRLKEENVTYAALRDQVLYK 288 Query: 217 NALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 +A + T ++ I+ + P+ F F ++P RKA+R+ Sbjct: 289 HARRYLIETDLDMATISANLSFSEPATFNNAFKRWSGMSPGAYRKANRK 337 >UniRef50_D1RT58 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT58_SEROD Length = 294 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 105/242 (43%), Gaps = 10/242 (4%) Query: 27 PLMPALCRIRQGKKVINWETHTLTV-DNNQIILFPCGYEFYIENYPEAG--LYLAEMLYL 83 P + + G+ + T+ D + G +P + + L Sbjct: 55 FFEPTVLIVLAGRIEFLTSGESHTLADTAAVGFIDQGVIADYTKFPPDNGSPFRSLFLTF 114 Query: 84 PIDLIESFQK----LYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSR-GFSTKIQEHL 138 D++ESF + +++ + N L + L ++++ S Sbjct: 115 SADVLESFYQFSQSHLSLSGDRKKPKFTATALNGALRESLQTLLKNLTQPNLSDARIRLR 174 Query: 139 AMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRR 198 +LL L +++ L +Q ++ R +LL + P T WTA L +S STL RR Sbjct: 175 IFDLLLVLAEQNIHFAL--PRRQGVLPRLSHLLRASPETDWTARSAGEALAMSESTLRRR 232 Query: 199 LASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPRE 258 L EG SF+ +L D+R+++ L IQTT ++++A GYK SRF ERF RF + P Sbjct: 233 LREEGGSFEKLLVDIRMHHGLMLIQTTRWNMAQVADACGYKSVSRFAERFTQRFGLPPSR 292 Query: 259 IR 260 +R Sbjct: 293 LR 294 >UniRef50_B4X114 Transcriptional regulator, AraC family protein n=2 Tax=Gammaproteobacteria RepID=B4X114_9GAMM Length = 358 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 72/183 (39%), Gaps = 12/183 (6%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 ++L + + + + +R + + PE + L + + + + Sbjct: 184 IWLQGEPPAAGRAMDDGAVPVRYRQARAGIWAPE---AVQWLDSPLPTANPEALSQ---- 236 Query: 141 GVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 +L L++ +L+ + LL+ ++A L+++ TL RRL Sbjct: 237 ----ALAQCERESALMAP-GDTLLRQVRELLVLGAHGYPAPEQLAERLHLTPRTLRRRLQ 291 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G FQS+L++ R ++ + ++ I I+ G+ P+ FT F +TP + R Sbjct: 292 ERGQGFQSLLEEARHRDSRHLLASSDMEIQRISELLGFADPANFTRAFKGWMGMTPSQWR 351 Query: 261 KAS 263 Sbjct: 352 HQQ 354 >UniRef50_C4Z9T9 Ada regulatory protein/6-O-methylguanine-DNA methyltransferase n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9T9_EUBR3 Length = 276 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 88/238 (36%), Gaps = 13/238 (5%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESF 91 + I+ G + E +L V +N +++ + PE L ++ Sbjct: 44 IFFIKDGTGRMLIENESLPVSSNSLVVIGAQVTHTEFSDPENP--------LDYYVLGVE 95 Query: 92 QKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVS--RGFSTKIQEHLAMGVLLSLGVN 149 + +P + C+E + + + +I +H ++L Sbjct: 96 GLKLNTDKEPEYIHVPASANSPFIRQCFENILREMHNKQDRYAEICQHYLDILILYFCRK 155 Query: 150 HVNHLLLSYSKQSLIS--RCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSF 206 + ++ S + + + + + +A +S L R A G S Sbjct: 156 DHVSYEVVDAQNSSRECHKVKRFIEHNYQSMISLDSLAENCSLSKYYLSHRFAELYGKSP 215 Query: 207 QSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + L++VRL +A + TT I EIA G+ S F++ F F+ +P++ RK+ R Sbjct: 216 IAYLNEVRLASARDLLLTTNHSIEEIAGCIGFSSTSYFSQSFQKNFHESPQQFRKSHR 273 >UniRef50_C6D3L6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3L6_PAESJ Length = 305 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 104/283 (36%), Gaps = 24/283 (8%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGY 63 +++ E++ +HR + + L I+QG + +E +T + + + G Sbjct: 15 HFLFHIEPYELKQGTMIPLHRHEFVE--LVFIKQGSGLHEYEGNTFPITAGDVFIIEPGM 72 Query: 64 EFYIENYPEAGLYLAEMLYLPIDL---------IESFQKLYTVTDQIRNKTSFF--LPQN 112 + G+ + +L++P L + SF Y + +R+ SF L + Sbjct: 73 DHAYTVEQSEGMEVVNVLFVPALLERELAVLSGVTSFIDFYYMEPFLRSDVSFQAKLTLS 132 Query: 113 PELIYCWEQLKTSVSRGFSTK---------IQEHLAMGVLLSLGVNHVNHLLLSYSKQS- 162 P + + + + + K + +L + N+ NH L S Sbjct: 133 PRQMMDIRGILEQLMKEYGNKESGYQFLIKSKLIELFIILSRIYANNRNHSLPSIQNDGE 192 Query: 163 LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSA 221 +I+R + + ++++ +S S G+SF +D R+ A Sbjct: 193 MIARICEFIKRHQAHPLSLEQISQMAGMSQSKFTLLFRQMTGMSFVEFRNDQRIQLAKQL 252 Query: 222 IQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 + + I+ IA + GY+ S F F TP RK + Sbjct: 253 LAASSDKIARIALDTGYEDLSHFNHVFKKLTGETPSLYRKRMK 295 >UniRef50_Q0VP70 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP70_ALCBS Length = 345 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 71/207 (34%), Gaps = 3/207 (1%) Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 + I+N + + A L D + Q + + + + Sbjct: 135 PARQHLIDNVLGSWVRYARWLT-GNDQLAPDQVWLEHPTPPAAQVDEYRRVFLCDVLFEQ 193 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTK- 178 V + +LLS H L + L R + G Sbjct: 194 PCSALVGPPQLLQQPIRQPDPLLLSTLEAHAIQQLNQLGVDTNLSQRVKQCIQDAIGHSL 253 Query: 179 WTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGY 238 VA L ++V TLHRRLA E S+Q +LD VRL A + TT P ++IA GY Sbjct: 254 PRKETVAERLGMNVRTLHRRLADEQQSWQKLLDSVRLQQARHLLTTTSLPQADIAAALGY 313 Query: 239 KCPSRFTERFHNRFNITPREIRKASRE 265 F F +TP + R ++ Sbjct: 314 SDIRSFQRSFKRHTTMTPGQYRNTPKD 340 >UniRef50_A9U8F0 Predicted protein (Fragment) n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U8F0_PHYPA Length = 244 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 1/139 (0%) Query: 126 VSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKV 184 + R + +L L L +S +L + V Sbjct: 10 LHRRDLDRPFLSYNEELLDILTPALDRSLDEQQRNRSFPETVKWILKRSLTAGRPDIQAV 69 Query: 185 ARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRF 244 AR L +S TL RRL E SF+ +L R A + I E+A GY+ + F Sbjct: 70 ARELGMSDRTLQRRLTEENTSFKHLLTQARHEQAREYLADPSLDIKEVAFLVGYEDQNSF 129 Query: 245 TERFHNRFNITPREIRKAS 263 F TP R Sbjct: 130 YRAFRLWEGNTPSHWRAEH 148 >UniRef50_B2I366 AraC-type DNA-binding domain-containing protein n=17 Tax=Acinetobacter RepID=B2I366_ACIBC Length = 341 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 49/132 (37%), Gaps = 1/132 (0%) Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISV 192 Q A LL L L ++ L+ + S + T VA L I+ Sbjct: 208 FQLWQAEPELLQLHEQLAIEKLQELARYDLVGEVRRAIGSTLESGETTLETVAAQLNITP 267 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 L +L+ SFQ IL D R A + T + + I G+ PS F F Sbjct: 268 RRLRTQLSEANTSFQQILSDYRCRLAKKLLANTNESVERIVYLTGFSEPSTFYRAFKRWT 327 Query: 253 NITPREIRKASR 264 N TP E RK + Sbjct: 328 NETPVEYRKRKQ 339 >UniRef50_Q1N6M1 Probable transcriptional regulator n=1 Tax=Bermanella marisrubri RepID=Q1N6M1_9GAMM Length = 340 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 15/189 (7%) Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFST 132 Y + + + + + F Q+ L L++ + G Sbjct: 162 QPDYSPIKVTFTHSVAGNVAEY----SEYFGCPVEFSSQSNSLEIDNGLLQSPLRHG--- 214 Query: 133 KIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLS-EPGTKWTANKVARYLYIS 191 G + + H LL S S + + LL P +VA Y+ +S Sbjct: 215 -------DGETYQILMQHAKSLLTQQSFSSPLEVIKDFLLKTLPDHVPDIEEVAEYMGMS 267 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 V + R+L+ G S+ +LD +R A++ ++ T P+ I+ G+ S F F Sbjct: 268 VRSTQRKLSEFGTSYSQVLDGIRKELAMTYLKQTQNPMIFISERLGFSEQSAFQRAFKRW 327 Query: 252 FNITPREIR 260 +TP++ R Sbjct: 328 TGVTPKQFR 336 >UniRef50_A6FDG0 Transcriptional regulator, AraC family n=1 Tax=Moritella sp. PE36 RepID=A6FDG0_9GAMM Length = 339 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 1/122 (0%) Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLAS 201 L+SL + L S +++S+ + ++S + VA L S +L R+L Sbjct: 215 LISLSDKAADDYLASLDCNNVVSQVRSEVVSLMATGVPNIDFVAEKLNFSQRSLQRKLND 274 Query: 202 EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 G S++ +++++R A + + EI+ G+ + F+ F +TP R Sbjct: 275 SGTSYKDLVENIRQTTAEQHLNQNRLSLGEISYLLGFSNVANFSRAFKRWKGVTPGVYRG 334 Query: 262 AS 263 Sbjct: 335 EH 336 >UniRef50_C6D094 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D094_PAESJ Length = 289 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 94/244 (38%), Gaps = 12/244 (4%) Query: 30 PALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIE 89 +L I +G+ T V+ + G E + + PEA L + +L+ +L+ Sbjct: 37 HSLYWIHEGRGTFLTNTEH-QVEAGMLAYLRPGLEMSMRSDPEAPLRMTMVLFDCAELV- 94 Query: 90 SFQKLYTVTDQIRNKTSFFL-----PQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 ++ ++ T + + FL PQ EL + ++ S + S + +LL Sbjct: 95 -YEAVWKNTMPVGKLSFPFLSQYGDPQAEELGAWFREINRSWAARISDGSSVPESQLLLL 153 Query: 145 SLGVNHVNHLLLSYSKQSLI---SRCYNLLLSEPGTKWTANKVARYLYISVSTLHR-RLA 200 + H + + + + L S ++A+ IS S L + L Sbjct: 154 LNKLQHSKEPDWNIDESGVFASYEKIKQTLESSYKENLRIEQLAKTYSISPSYLRKVFLK 213 Query: 201 SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G+ + LD +R A + T PI+++A+ GY F++ F ++P R Sbjct: 214 HTGMGPKQYLDHIRNRQACDYLVFTDYPINQVAKLCGYYEEYHFSKMFKQHNGMSPSHYR 273 Query: 261 KASR 264 R Sbjct: 274 ITKR 277 >UniRef50_A3CL13 AraC-type DNA-binding domain-containing protein, putative n=1 Tax=Streptococcus sanguinis SK36 RepID=A3CL13_STRSV Length = 282 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 2/250 (0%) Query: 15 RMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAG 74 + HH + + + +G+ + + Q + P G + + E Sbjct: 27 KTEAHHSFGPAVRDVYVIHIVLEGRGTYSVGNQRYDLQEGQGFVVPPGQSVFYQADREE- 85 Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKI 134 + + L L+ + + + + L + L++ + S Sbjct: 86 PWSYVWMGLGGRLLPRYLQDLGLQSGQWSFELTSLQEFKALVFESLAYEGSGITAELALQ 145 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVST 194 ++ LLS + + + S + + LL S + ++A+ L + S Sbjct: 146 RQVYRFLELLSQRLKQTSLITESRRVNPYVQQVLELLSSHLPESLSVQELAQKLALHPSY 205 Query: 195 LHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 L R E G + +D+RLN A + + + EIA + G+ F++ F Sbjct: 206 LSRLFKDEVGKGIKEYSNDLRLNMAADLLTGSQLSVEEIANKTGFAGTQSFSKAFKKARG 265 Query: 254 ITPREIRKAS 263 +P RKAS Sbjct: 266 QSPLNFRKAS 275 >UniRef50_Q0K5C6 Transcriptional regulator, AraC-family n=2 Tax=Cupriavidus RepID=Q0K5C6_RALEH Length = 357 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 3/205 (1%) Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWE 120 E + + A L + + + R F Sbjct: 153 PLSRHAHELHMATWVVFARWLIGEQHVATQVEFPHPAPADTRLHAEVFGCPVVFNAARHA 212 Query: 121 QLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLL-SEPGTKW 179 + + + + + + + + +++ + P + Sbjct: 213 MHIERALLDLPSLQADAGMQAQMTRIADTQLQQI--APAGADALAQARAYISGRLPQGEL 270 Query: 180 TANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYK 239 VA +L + V TL RRL ++G+S+ ++D+VR A + +++ A GY Sbjct: 271 PIADVAAHLSLPVRTLQRRLQAQGISYSQLVDNVRRALAEQYLADPGISLAQCAMRLGYS 330 Query: 240 CPSRFTERFHNRFNITPREIRKASR 264 S FT F TP R+ + Sbjct: 331 EQSAFTHAFKRWTGETPHGWRRKGQ 355 >UniRef50_D0C0B4 Virulence regulating protein n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0C0B4_9GAMM Length = 330 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 1/111 (0%) Query: 151 VNHLLLSYSKQSLISRCYNLLLSE-PGTKWTANKVARYLYISVSTLHRRLASEGVSFQSI 209 L+ ++ + +LL P T VA+ L +S TL R L E +F+++ Sbjct: 217 QRSLIQLDEDATVSEKVKAILLENLPAGLCTIEDVAQRLAMSKRTLQRLLLEERTNFKTL 276 Query: 210 LDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 LD R + A ++ + EI+ G++ + F+ F N TP+E R Sbjct: 277 LDATRQSLAQHYLEKSSMSTGEISFLLGFQEHNSFSRAFKNWTGNTPQEYR 327 >UniRef50_B7LQH5 HTH-type transcriptional regulator gadX for glutamic acid decarboylase and transporter (GadA, gad BC) (AraC/XylS family) (Modular protein) n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LQH5_ESCF3 Length = 289 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 91/262 (34%), Gaps = 6/262 (2%) Query: 7 TNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF- 65 + + + +C I + N + + +T+ +I Sbjct: 1 MEMSLSLYIAAILKIMKNNTYPGVIICSINETILTFN-DGNKITIAPGNLIFVDPRQLTI 59 Query: 66 -YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKT 124 + L + + L + + S L + + + L Sbjct: 60 THYGELENVALITQKTISLLVSALNS-DSLIHSYKAHNSPFIIRKCPDIAIFKYAANLSH 118 Query: 125 SVSRGFSTKIQEHLAMGVLLSLGVNHVNH--LLLSYSKQSLISRCYNLLLSEPGTKWTAN 182 + K+++ M L+SL ++ N LL+ + +R ++ S W+ Sbjct: 119 KSDLSCAEKLRKRSLMLALMSLFLDDQNFIPLLMRILHPDITTRVCAVINSNIANDWSLT 178 Query: 183 KVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +A L +S S L ++L +E ++ +L + R+ AL ++ + + A GYK S Sbjct: 179 LIASELLMSPSLLKKKLQAEQTTYSQLLTECRMQQALKLLRCDDYAVKKTAILCGYKSVS 238 Query: 243 RFTERFHNRFNITPREIRKASR 264 F F F ITP E + + Sbjct: 239 YFIAVFRKHFGITPTEYQDKRQ 260 >UniRef50_Q2SDE8 AraC-type DNA-binding domain-containing protein n=3 Tax=Gammaproteobacteria RepID=Q2SDE8_HAHCH Length = 347 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 75/207 (36%), Gaps = 4/207 (1%) Query: 60 PCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCW 119 P I N + + A L D Q L+ + + Sbjct: 138 PDVRPHMIANVLASWVNFARWLA-NADSAAPLQVLFEHPSPGPEFEPVYQRAFQCEVIFD 196 Query: 120 EQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQ--SLISRCYNLLLSEPGT 177 + V +L +H + + + ++ SL++R N + + Sbjct: 197 SPVSGLVVNDALLDTPLRQPDLLLRQTLESHASAQIKTLDEEDLSLLTRVKNTIRHQLRH 256 Query: 178 KWTANK-VARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 + VA L ++ TL RRL+ S+Q +LD+VRL A + + PI +IAR+ Sbjct: 257 GVSRQDMVAERLGVTARTLQRRLSEYHSSYQLLLDEVRLEMAQDMLTHSDVPIPDIARQL 316 Query: 237 GYKCPSRFTERFHNRFNITPREIRKAS 263 G+ F F N +TP E R + Sbjct: 317 GFAEVRSFHRSFKNHTGVTPGEFRDNA 343 >UniRef50_Q1N5E2 Transcriptional Regulator, AraC family protein n=1 Tax=Bermanella marisrubri RepID=Q1N5E2_9GAMM Length = 341 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 10/166 (6%) Query: 98 TDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLS 157 Q+ T F + + L+ + L +L H + LL + Sbjct: 184 YQQVFGVTPRFSQNITAMEFEKAVLQRPLKES----------DAGLHTLHRAHADQLLAA 233 Query: 158 YSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNN 217 +S S ++ L+ T +VA L +S TL RRL E +F ++D+ R Sbjct: 234 HSNTSWKAKVIKTLVESGHYHMTREQVANKLNVSTRTLQRRLQQENTNFIDVMDEQRRVK 293 Query: 218 ALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 A I T + + +IA + G+ S F H F+ TP E+R++ Sbjct: 294 AEELIIKTDRSLKQIAEDLGFAESSTFYRACHRWFDCTPNELRQSH 339 >UniRef50_Q0VP86 Transcriptional regulator, AraC family n=2 Tax=Alcanivorax RepID=Q0VP86_ALCBS Length = 339 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 60/169 (35%), Gaps = 10/169 (5%) Query: 96 TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL 155 + + + E+ + + L + + L L +++++ Sbjct: 175 EEHRFLFDCPIEYQADANEVTFRADFLDLPLVQN--DLSLSKFLKESLAQLFDGNIHNV- 231 Query: 156 LSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVR 214 L ++ ++ +E G + ++ L ++ TL RRL S+Q I D +R Sbjct: 232 ------GLPAQIRAIISNEYGNSFPDFTEICGKLNMTPQTLRRRLKEANTSYQEIKDAIR 285 Query: 215 LNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 + ++ + I EIA G+ S F F TP R+ Sbjct: 286 KDASVYYLSKPDLSIDEIALLMGFSEASSFHRAFKKWTGKTPSNFRREH 334 >UniRef50_B7M6J8 Putative AraC-type regulatory protein encoded in prophage CP-933H ( transcription regulator) n=16 Tax=Escherichia RepID=B7M6J8_ECO8A Length = 250 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 49/240 (20%), Positives = 92/240 (38%), Gaps = 12/240 (5%) Query: 31 ALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEA---GLYLAEML--YLPI 85 ++ I + + + ++ ++ +L + YPE + AE + YL Sbjct: 9 SVILILE-SFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIVADFGAEFISRYLKA 67 Query: 86 DLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLS 145 + + ++ + F LI + E +A L + Sbjct: 68 NNLRDISDCREYPSYLKINFADFS-LIKGLISWANHCAEYIE-----IFDESIAFTCLSA 121 Query: 146 LGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 + L +S ++ ++ ++ W ++ LY+S S L R+L EGVS Sbjct: 122 FSSEKQFGVFLFECLKSTEAKVKTIIHTDLSAPWRLKDISSRLYLSESLLKRKLKEEGVS 181 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE 265 F I+ D R+ A + T PIS++A+ GY S FT F F ++P + + S E Sbjct: 182 FSKIILDERMQMAEYLLSTRCYPISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSE 241 >UniRef50_Q3IEQ3 Putative transcriptional regulator containing an Adenosine deaminase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IEQ3_PSEHT Length = 338 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 10/174 (5%) Query: 89 ESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGV 148 I N F +L + L + + + + Sbjct: 170 YPAPVHAERYQAIFNCPVEFDAPVTQLFFDAAILDQPLPQSSPESV----------NFYK 219 Query: 149 NHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQS 208 ++ + + R +++ +P + + + A L+ S TL R+L ++G +Q Sbjct: 220 KLCEEKSITRNHGDIAWRLSQIIVEDPASPPSLHDAALKLHCSCRTLSRKLLAQGWRYQQ 279 Query: 209 ILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKA 262 ++D VR +A + I+ I ++ GY S F F ++P R A Sbjct: 280 LIDQVREIHARRHLSDPTLSITRIGQQLGYADSSGFHRAFKKWTGLSPSAFRHA 333 >UniRef50_A1U5N3 Transcriptional regulator, AraC family n=2 Tax=Gammaproteobacteria RepID=A1U5N3_MARAV Length = 288 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 81/209 (38%), Gaps = 10/209 (4%) Query: 66 YIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTS 125 + EN P + + + + I + T+ + +F + L + + Sbjct: 81 FFENRPLEDVRRSI-IEATVLAIRNVLDFTTMGTSEIREVTFPFDGDERLAESVFRCPVA 139 Query: 126 VSRGFSTKIQEHLAMGVLLSL--------GVNHVNHLLLSYS-KQSLISRCYNLLLSEPG 176 +R + A+ L + + L S +Q+ +R L+L Sbjct: 140 YNRDLAGFTLPLAAIDTPLKMTNKISFQEALKVCQQELDQLSTEQTWSARVRRLMLQSRH 199 Query: 177 TKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 + AR +I+ TLHRRL EG S++++L+ VR A+ +++ I EI+ Sbjct: 200 GFPSLEMTARRFHITPRTLHRRLVDEGTSYRAVLEGVRHQLAIQYLESGQMSIQEISFAL 259 Query: 237 GYKCPSRFTERFHNRFNITPREIRKASRE 265 GY + F + F + P E A R+ Sbjct: 260 GYSDIANFRKAFKRWEMLAPSEYLNAHRQ 288 >UniRef50_A4BKJ5 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BKJ5_9GAMM Length = 297 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 12/263 (4%) Query: 14 IRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEF--YIENYP 71 +R + + P LC + QG+K +T + ++ + Sbjct: 33 VRSREPSALMN-TLYNPLLCLVLQGQKEARLGERVVTFSAGESLIVSINIPTVSQVTAAS 91 Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQ--IRNKTSFFLPQNPELIYCWEQLKTSVSRG 129 A Y+A L + +D I + Q ++D N + EL+ ++L R Sbjct: 92 PAKPYVALALEICLDTIRAIQAELELSDDDVADNASIASGISGGELVQAVKRLFELRDRS 151 Query: 130 F------STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANK 183 + + + + +LL + L S +S I+R L + Sbjct: 152 YVEQKIMAPILLREIHFRLLLESHGGMLRRLAYPDSHESRINRAILKLQKDFAEPICVQD 211 Query: 184 VARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPS 242 +A + +S S+ H + + L DVRL A + T +S + E G++ + Sbjct: 212 LAALVGMSASSFHEHFKAVTATTPLQFLKDVRLLVAQQKLLATALSVSTVGFEVGFESTA 271 Query: 243 RFTERFHNRFNITPREIRKASRE 265 F+ + +F P + R+ S + Sbjct: 272 HFSREYARKFGYPPSQNRRGSVQ 294 >UniRef50_A0Y864 Transcriptional regulator, AraC family protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y864_9GAMM Length = 345 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 78/228 (34%), Gaps = 20/228 (8%) Query: 52 DNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIES--------FQKLYTVTDQIRN 103 +N I++ P + +L E + + S QK + + + Sbjct: 118 ENGSIVVLPQ----VYLGESDPDHFLIEFITVLWHRFASWAIDERIPLQKAFFSYPEPNH 173 Query: 104 KTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSL 163 + + ++ + + + + + L + + L + ++S+ Sbjct: 174 SNFYEELFSCDVRFEQSACGFKFHESYLKRRITRTPIELEAWLRDSPADLLYMPGREKSI 233 Query: 164 ISRCYNLLL--------SEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRL 215 ++ LL + + L +S + RRLA EG S+Q I D +R Sbjct: 234 QAQLKASLLEITKAEVARDAMRYPAFESLCSDLAMSPQVVRRRLADEGTSYQHIKDAIRC 293 Query: 216 NNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 A + IS+IA G+ P+ F+ F +P + R + Sbjct: 294 ETAQVLLANPENSISDIAVRTGFSEPAAFSRAFKKWTGESPAQYRSSR 341 >UniRef50_A3M5I9 Transcriptional regulator AraC family n=8 Tax=Proteobacteria RepID=A3M5I9_ACIBT Length = 341 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 19/189 (10%) Query: 79 EMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHL 138 ++ + ++ +++ + F + + E L + Sbjct: 168 HFIHERPENVQPYEEYFGCP-------VLFEQPVALMRFDKEILSLPLKNS--------- 211 Query: 139 AMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEPG-TKWTANKVARYLYISVSTLH 196 L+++ H + LL S + + + + T ++A L S TL Sbjct: 212 -DAALVAILEKHADKLLASLPHIDEITDQVRKQIAYLLHQGEPTIEQLAERLNYSRRTLQ 270 Query: 197 RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITP 256 RRL G +F+ L+ VR A S ++ I EIA GY S FT + TP Sbjct: 271 RRLTEAGTNFRKELNTVRYELAKSYLKDLRLQIVEIALLLGYAEYSPFTRAYKEWSGKTP 330 Query: 257 REIRKASRE 265 ++ R+ E Sbjct: 331 QQAREEMNE 339 >UniRef50_Q0JYY4 Transcriptional regulator, AraC-family n=2 Tax=Cupriavidus RepID=Q0JYY4_RALEH Length = 344 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 12/194 (6%) Query: 81 LYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAM 140 + + + + +F + +T + S + Q + E V G Sbjct: 147 IDMELCSLLAFGRQFTRKPLHPLRVSLRIGQPDWHLRYTEAFDCPVRFGEPEDAIVFGRR 206 Query: 141 GVLLSLGVN----------HVNHLLLSYSKQSLISRCYNLLLSEPG-TKWTANKVARYLY 189 + L L + SL L + G + VAR+L Sbjct: 207 DLALRLAARVRSGPAGAGAGHAAREARPASASL-DDVRAALQALAGDRALSLAAVARHLD 265 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 IS TL RRL + G SF+++ ++ R A + + EIA G+ + F F Sbjct: 266 ISERTLQRRLMAAGTSFRTLCEEARRELAGGYLAGGAMSLGEIAFRLGFDDANSFFRAFR 325 Query: 250 NRFNITPREIRKAS 263 +TP + R+A+ Sbjct: 326 RWTGMTPGDYRRAA 339 >UniRef50_D1N3X5 Transcriptional regulator, AraC family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N3X5_9BACT Length = 286 Score = 133 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 78/232 (33%), Gaps = 7/232 (3%) Query: 34 RIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQK 93 G + + + + +L ++ + + + + Sbjct: 58 YTLSGMGRLRFGENEYPIPPGSAVLLVVPENHCYYLPEDSPYWRFLFVSVYGS---ELVR 114 Query: 94 LYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQE-HLAMGVLLSLGVNHVN 152 L T + +P + WE LK + + + A ++SL Sbjct: 115 LVTDFRRSHGFLLQHGTDSPVVASAWELLKKCREKKLDNRYRASAAAYDFVMSLFSEPAG 174 Query: 153 HLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILD 211 ++++ + R + L+ + +A S RR EG S + Sbjct: 175 RG--THAQDDFLKRVHAYALANLSRPLSVGDLADAAGCSRWHFSRRFQQLEGKSPHEFVT 232 Query: 212 DVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 D+++ A+ +QTT + E+A G++ S F + F N + ++P R + Sbjct: 233 DLKMRLAVRLLQTTNGSVKEVAENCGFEDASYFCKVFRNHYGVSPAGFRSGA 284 >UniRef50_A6VAM9 Transcriptional regulator, AraC family n=3 Tax=Pseudomonas aeruginosa RepID=A6VAM9_PSEA7 Length = 293 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 12/267 (4%) Query: 2 LARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPC 61 L + L + H + R P L R G+ + + V +++ P Sbjct: 34 LGQACYPLALGYYPEAHGHRMQRRTPDDHLLIYCRAGRGWLECAGERVEVGGGDLLVLPK 93 Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 G E + + ++ L E F ++R L P L+ ++ Sbjct: 94 GLEHAYGADSQR-PWSIYWVHFEGVLAEDFLHPLGSVPRLR------LGMQPRLLAEFDA 146 Query: 122 LKTSVSRGFSTKIQ---EHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK 178 L +G S HL G+L SL V L S I L+ + Sbjct: 147 LLALRRQGLSLPHFIHAAHLLQGLLTSLAVRPARASLKSGRVLD-IDAVQALMRAHLHDS 205 Query: 179 WTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 +++A +S + + G + +++ +A + + +IA + G Sbjct: 206 LNLDELAAQFKLSRFHFAKTYRALTGQAPIQDFIQMKMAHACRLLDEGALEVRQIAEQLG 265 Query: 238 YKCPSRFTERFHNRFNITPREIRKASR 264 Y P F+ F + P R + Sbjct: 266 YADPYYFSRLFRKVVGMAPSHYRALHQ 292 >UniRef50_D0SJB7 Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJB7_ACIJU Length = 351 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 69/195 (35%), Gaps = 12/195 (6%) Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS----FFLPQNPELIYCWEQLKTSVSRGF 130 +L+ I+ E F D + S F + L + L Sbjct: 163 HFLSLFSKELIEQSEVFLDWEESNDYQCIELSKVKIHFSQKRNGLRFPKFFLNCKNKNAD 222 Query: 131 STKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCY-NLLLSEPGTKWTANKVARYLY 189 Q+ L L + L+ + + L LL + T +A L Sbjct: 223 QVSFQQAL-------LYCENDKGRLVKENIRDLQKSIRSELLYNSSNGYPTLPMIAERLN 275 Query: 190 ISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFH 249 +S TL R L ++G +F I+ DVR A +Q I +IA GY+ + F F Sbjct: 276 MSERTLKRHLQAQGTTFLQIVADVRFTEAKKMLQHKQYSIQDIASIVGYEEATNFIRAFK 335 Query: 250 NRFNITPREIRKASR 264 F TP + RK S+ Sbjct: 336 KTFGETPSQYRKRSQ 350 >UniRef50_UPI00016A75A2 transcriptional regulator, AraC family protein n=3 Tax=pseudomallei group RepID=UPI00016A75A2 Length = 336 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 1/185 (0%) Query: 78 AEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH 137 A + +L DL E + +T + QL+ S + K Sbjct: 152 ATVKFLFPDLFEQIELGFTWPQPDYFERYRDRLPKVNFRASDNQLRLP-SSSLARKSLLA 210 Query: 138 LAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHR 197 A ++ LL+ L+ R L+ + ++A L++S TL R Sbjct: 211 NAAAHSQAIRQLDREMALLNLDASDLVDRVRAGLMLSEDGYPSLARLASSLFLSERTLKR 270 Query: 198 RLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPR 257 RL G S++ +L+ R +A + ++ T +++++ + GY+ P FT F I P Sbjct: 271 RLREHGTSYREMLEKARYRDACALLRETDLSLADVSAKLGYQNPPTFTRAFRRWSGIAPS 330 Query: 258 EIRKA 262 R Sbjct: 331 RYRDT 335 >UniRef50_Q481H7 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q481H7_COLP3 Length = 344 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 15/190 (7%) Query: 72 EAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFS 131 E+ + A K + ++ + + E ++ ++L + R Sbjct: 168 ESFSFDALRFSFAKP------KHHRGYEEFFGCPITYGNPHNEFVFDDDKLLLNTPRSNP 221 Query: 132 TKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYIS 191 AM +LLS N +N + +K + + + A +A LY++ Sbjct: 222 ------FAMPLLLSQCDNVLNSV---ATKNEFLITINQWIAANMHKDLCAENLASDLYLT 272 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 TL R+L+ +G SF+ I+ ++R + A I T I +I G+ S F F Sbjct: 273 PRTLRRKLSEQGTSFRDIVKELRCSAAKKLIIETQLTIEDIGCAIGFNDVSNFRAAFKKW 332 Query: 252 FNITPREIRK 261 TP +R+ Sbjct: 333 TGQTPSNLRQ 342 >UniRef50_C6D3K6 Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3K6_PAESJ Length = 277 Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 92/269 (34%), Gaps = 14/269 (5%) Query: 7 TNLKIEEIRMHK----HHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCG 62 + + E H+ H +HR + L + +G+ + V ++L+ G Sbjct: 12 SLIGGSEFNCHEASPFQHPLHRHETFSELL-LVEEGRGTFVVDGKPYEVGPGTVLLYHRG 70 Query: 63 YEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPE---LIYCW 119 E + + A ++ + Y + + + C Sbjct: 71 IWH--EEWSTHYPFRATYFAFKDLQVKGCPQNYFLGPDQAPVIELGEKTDETASLVRECL 128 Query: 120 EQLKTSVSRGFSTK--IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGT 177 +L + ++ + + L + + ++ ++ ++I + + Sbjct: 129 AELHSGLAESRAAANHLFGLLLARLARLVPGESTERRIVKPAEAAVI-KARGYIEENYQQ 187 Query: 178 KWTANKVARYLYISVSTLHRRLASE-GVSFQSILDDVRLNNALSAIQTTVKPISEIAREN 236 T ++A+ ++S L E G+S L R+ A + T +P+ EI Sbjct: 188 PITLEQLAKVTFVSKYYLSHLFQQEVGISVIQFLIQCRMEAAKRYLIMTGRPVKEIGELV 247 Query: 237 GYKCPSRFTERFHNRFNITPREIRKASRE 265 GY+ F F +TP + R+++RE Sbjct: 248 GYQSEPTFHNLFKKVTGLTPGQFRESARE 276 >UniRef50_B7RT67 Transcriptional regulator, AraC family n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RT67_9GAMM Length = 358 Score = 133 bits (335), Expect = 5e-30, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 10/191 (5%) Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 G ++ + L + + ++ F + + L + + + Sbjct: 173 GWFVGSFIDLISVEMTERAEAGKDYSEVFGAPVRFGSERDAFAFHRRFLSFPIVQSEES- 231 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISV 192 + L +S + SL R NL+ ++ +VA LY++ Sbjct: 232 --------LHAMLATYPAELFRISPEEHSLAIRIRNLIGNDFQRPLPGLQEVAERLYMTT 283 Query: 193 STLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRF 252 TLHRRL E SFQ I D R + A+ + + SE++ G+ S F F Sbjct: 284 PTLHRRLREEQTSFQQIKDHCRRDAAIGYLSSAQYTTSELSELMGFSDSSTFHRAFKKWT 343 Query: 253 NITPREIRKAS 263 +TP++ RK Sbjct: 344 GLTPQDYRKKH 354 >UniRef50_B6B8R5 Transcriptional regulator, AraC family n=1 Tax=Rhodobacterales bacterium Y4I RepID=B6B8R5_9RHOB Length = 338 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 7/178 (3%) Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVL 143 + ++ F +++ E L ++ G + L + VL Sbjct: 165 EAAFVHQRRRGAEEMSAFFGCPVRFGAPASRIVFKPEDLDLPLASG------DRLLLRVL 218 Query: 144 LSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASE 202 + G ++ L L ++ + + G + VA L +S TL R+LA Sbjct: 219 RAFGDQMLHGRGLGRKSSDLTAQVEEAVSARLSGGTASLANVAADLGMSPRTLSRKLARA 278 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G S+ ++L+++R A+ ++ T P+SEIA GY + F+E F +P + R Sbjct: 279 GTSYFTVLEELRKALAIRYLRETRLPLSEIAFLLGYSGLNSFSEAFRRWTGQSPGQFR 336 >UniRef50_Q7UYE3 L-rhamnose operon transcriptional activator n=1 Tax=Rhodopirellula baltica RepID=Q7UYE3_RHOBA Length = 290 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 81/251 (32%), Gaps = 20/251 (7%) Query: 32 LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDL---- 87 + I GK V + + + N + L L + L Sbjct: 42 IVIITGGKGVHITGEDSYELVTGDTFVIGGDRPHDYLNMDQLSLINILFDPLELPLSIGD 101 Query: 88 ---IESFQKLYTVTDQIRNKTSFF--LPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGV 142 + + L+T+ R + F L NP + + S+ + + M Sbjct: 102 LQSLSGYHALFTLEPAWRKRHQFTSRLQLNPAELIETLRYVESLDQELKQRSAGFRTMAT 161 Query: 143 LLSLGVNHVNHLLLSYSKQSLISRCYNL------LLSEPGTKWTANKVARYLYISVSTLH 196 L L + ++ + + + + + + +S Sbjct: 162 LTMLQLVTFLSRCYIRTRNPESKKLLRIAEAISHIQRHFDRPISLDDLVEISGMSRRNFI 221 Query: 197 RRLASEGV---SFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFN 253 R EG S L VR+ A +++T + I++IA + G+ + F+ +F Sbjct: 222 RTF--EGTMETSPIKYLIQVRIQEASRLLRSTDRSITDIAFDVGFSDSNYFSRQFRTHLG 279 Query: 254 ITPREIRKASR 264 ++PRE RK R Sbjct: 280 LSPREYRKQMR 290 >UniRef50_D0LBD5 Helix-turn-helix-domain containing protein AraC type n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LBD5_GORB4 Length = 385 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 19/271 (7%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKP------LMPALCRIRQGKKVINWETHTLTVDNNQII 57 R +L + IR + I +C I G + + Sbjct: 68 RPFGDLHVSSIRCEEQTVIRSPAMIRSDPTEDFLVCLITDGSVEVTQAGRATLLRPGGFA 127 Query: 58 LFPCGYEFYIENYPEAGLYLAEMLYLPID-----LIESFQKLYTVTDQIRNKTSFFLPQN 112 G F + + ++ +P L S+ +T + + Sbjct: 128 FLELGEPFVFHS---PDTFRQVVVRVPGRMMSGRLPNSYAHRFTGREFAPTSRPAGIV-- 182 Query: 113 PELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLS-LGVNHVNHLLLSYSKQSLISRCYNLL 171 L+ + R ST + + + + H S+ Q L +R ++ Sbjct: 183 GTLLTQIANADAPIPRAASTSFATSVVDMLTTTIMAELPAEHRKESFRSQDL-ARIQQVI 241 Query: 172 LSEPGT-KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPIS 230 ++ + +A +S + + +A+ G S + L R+ A + +T + ++ Sbjct: 242 ADNLHDADFSLSDLAAQAGMSARNVQKLVATTGNSPMAWLYAARIERAKHLLMSTGQSVA 301 Query: 231 EIARENGYKCPSRFTERFHNRFNITPREIRK 261 E++ G++ S F+ F + ++P R+ Sbjct: 302 EVSECVGFRDVSHFSRMFRKQVGVSPGRYRR 332 >UniRef50_A1TY01 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TY01_MARAV Length = 345 Score = 133 bits (334), Expect = 7e-30, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 60/172 (34%), Gaps = 13/172 (7%) Query: 96 TVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLL 155 + F +L + L +S + + + Sbjct: 183 ERYQYLFGGKVTFSAGVNQLRFRKSFLGLPMSLSNPVARR----------VAEAQCEEEM 232 Query: 156 LS-YSKQSLISRCYNLLLS-EPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDV 213 + S+ R LL S G VA+ + +S TL R+L++EG F + + V Sbjct: 233 RQMEASASVSDRVLRLLESARDGRLPGLEDVAQQMGVSPRTLRRQLSAEGGGFHGLQESV 292 Query: 214 RLNNALSAI-QTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 R A + + + I EIA GY PS F F ++P R+ ++ Sbjct: 293 RHQRARELLLRHSAMSIDEIAEHLGYSDPSNFGRAFRKWEGMSPSAWRRDNQ 344 >UniRef50_A1TXY8 Transcriptional regulator, AraC family n=2 Tax=Marinobacter RepID=A1TXY8_MARAV Length = 346 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 10/181 (5%) Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 +++ ++ T F + + + L + ++ VL Sbjct: 171 LEIAHPEPAYADEYRKLFGGTVHFGCGITRMAFDSKHLGHPIPHRNP-----YVYSAVLK 225 Query: 145 SLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK-WTANKVARYLYISVSTLHRRLASEG 203 + +++S + L+ + T A+ +AR ++S TL+R+L EG Sbjct: 226 QVNAVMARLQ----TRRSFSRKVRRLISRQMATDRIDADTLARQCHMSRQTLYRKLKKEG 281 Query: 204 VSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKAS 263 +SF +++ VR + AL + + EIA G+ S F+ F + P + R + Sbjct: 282 MSFHDLVEQVRKDKALRYVADDQYALGEIAFLLGFSELSAFSRAFKRWTGVAPAQFRASH 341 Query: 264 R 264 + Sbjct: 342 Q 342 >UniRef50_UPI000178AA55 transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178AA55 Length = 275 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 10/241 (4%) Query: 24 RVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYL 83 L I G+ + L Q++L P YL + Sbjct: 38 DYTVSYNKLYFILDGEGWVKIGDEELYPVPGQLVLMPARTRQSYSVISGR-PYLKYWSHF 96 Query: 84 PIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEH--LAMG 141 + +S V + + L N E+ ++QL + + + Sbjct: 97 SATVGDS-----DVFSWLNVPHCYDLSGNAEMPALFQQLVDAHRSDTLAARLREKSVMLD 151 Query: 142 VLLSLGVNHVNHLLLSYSKQ-SLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLA 200 +L + + + + + + + + + T ++A L++ + + Sbjct: 152 ILSRVFEHQQPQIHADKMEDMGRLHKVQQYIKNHLHEEITLEQMAGTLHLHPNYFIKYFK 211 Query: 201 SE-GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREI 259 G++ Q L R+ A ++TT I EIA G++ + F++ F +P E Sbjct: 212 RHFGITPQKYLSLKRMEQAKLMLRTTSLSIKEIADATGFESANYFSKTFRKEVGYSPSEY 271 Query: 260 R 260 R Sbjct: 272 R 272 >UniRef50_Q65QM2 AraC protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65QM2_MANSM Length = 290 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 89/256 (34%), Gaps = 14/256 (5%) Query: 14 IRMHKHHEIHRVKPLMPA-LCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPE 72 H ++ V L + +C I QG+K + + + + E + Sbjct: 30 FVFHSETDLRDVSQLQESGICLILQGRKDVRVGDQHYRYQAGEFVCYTVDLPIMTEYLTD 89 Query: 73 AGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTS---FFLPQNPELIYCWEQLKTSVSRG 129 G YL L+ + L+ + S +PELI +E L Sbjct: 90 DGGYLDLRLFFDLPLMREIIDELNRQNFSFAPASQQKIVSTASPELIRAFEMLICLTENS 149 Query: 130 FSTKIQEHL---AMGVLLSLGVNH--VNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKV 184 I L A+ L G + + L S I L + ++ Sbjct: 150 QDLPIMLPLIKKAIYFYLLTGEQGGTLRQIALQNSNSQRIVETVGWLKEHYNESFDIEQL 209 Query: 185 ARYLYISVSTLH---RRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCP 241 A +S+S + RRL G+S ++RL A + ++ K ISEIA E GY Sbjct: 210 AAASSMSISGFYAQFRRL--TGMSPLQYQKNLRLTKANALLKLGQKNISEIAFEIGYDSL 267 Query: 242 SRFTERFHNRFNITPR 257 +F+ + F +PR Sbjct: 268 PQFSREYKRYFGHSPR 283 >UniRef50_C7MT39 DNA-binding domain-containing protein, AraC-type n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MT39_SACVD Length = 321 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 67/179 (37%), Gaps = 11/179 (6%) Query: 87 LIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSL 146 L T+ ++ F P N + L + + A ++ Sbjct: 144 LARDVAASRTLIVELLGVRPDFDPVNAVISLPRALLDRRMPQ----------ANDHTAAV 193 Query: 147 GVNHVNHLLLSYSKQS-LISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVS 205 LL ++ R + LL+ G + VA L ++ TL RRLA+EG S Sbjct: 194 CEQQCRELLAKRRERGGTARRVRDRLLATDGLHTDMDTVAAELAMTARTLRRRLAAEGTS 253 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASR 264 +++++D+VR A + T + ++A GY + F F + P ++ R Sbjct: 254 YRALVDEVRQTLAEELLATRSLSVEQVAYRLGYGDAASFVRAFTRWKGVPPGRYARSGR 312 >UniRef50_C6WD12 Transcriptional regulator, AraC family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WD12_ACTMD Length = 350 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 63/203 (31%), Gaps = 17/203 (8%) Query: 59 FPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYC 118 + E P + + P V +++ F +Y Sbjct: 152 LAAVHSVIGELLPGGLPLRSVVFGFPEP------GEVAVHERVFGLRPVFGAPVTAAVYD 205 Query: 119 WEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQS-LISRCYNLLLSEPGT 177 L + + + L+ ++ + L Sbjct: 206 AGLLDRPLPQADPHTVAA----------CEAQCRRLVARRRERGGIAHEVRERLAGPGAL 255 Query: 178 KWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENG 237 ++VAR L +S TL RRLA G S++ +LD+VR A ++ + E AR G Sbjct: 256 DCGMDRVARELSVSTRTLRRRLAGAGTSYRELLDEVREALAERLLRGGALSVEEAARRLG 315 Query: 238 YKCPSRFTERFHNRFNITPREIR 260 Y S F F +TP R Sbjct: 316 YAEASSFIHAFKRWKGVTPATWR 338 >UniRef50_Q480T9 Transcriptional regulator, AraC family n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480T9_COLP3 Length = 331 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 7/191 (3%) Query: 75 LYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKI 134 + + ++ + I L + K F + + +K + Sbjct: 143 RFSSWLIDVKIPLSQVCFTHPKPQHSQEAKLLFTCRHS----FNRPTVKLCFHAKYLDLP 198 Query: 135 QEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTK---WTANKVARYLYIS 191 + L + + + + S QS ++ +L+ + + +A L +S Sbjct: 199 CVRTRTELTRFLRDSPADLITIPGSGQSFKAKIRAILIHDESDILFCPSFEILALSLNMS 258 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 TL RRL EG S+ I D++R + A+ + T + I++I+ G+ P FT F Sbjct: 259 AQTLRRRLKVEGTSYPMIKDEIRRDLAIDYLVMTNRNITDISTALGFSEPRSFTRAFKQW 318 Query: 252 FNITPREIRKA 262 ++P + +A Sbjct: 319 TGVSPSKYNRA 329 >UniRef50_Q0G2J4 Transcriptional regulator, AraC family protein n=3 Tax=Alphaproteobacteria RepID=Q0G2J4_9RHIZ Length = 360 Score = 132 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 73/205 (35%), Gaps = 4/205 (1%) Query: 62 GYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQ 121 G E + + LA + + V ++F Sbjct: 158 GLRLSNEATLASAISLARQVSPVPVTPLQVFLRHGVPGSFAAHEAWFGCPVRFDAKLDAI 217 Query: 122 LKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWT 180 L + + + + L+S +N + +L+SR + + Sbjct: 218 LFSPETLAQPNILGDEGISKYLVSHLDAELNEI---AEDVTLVSRARDTIAQALNEGSPR 274 Query: 181 ANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKC 240 +ARYL +S + HRRL+ GVSF ++ ++ R + A+ ++ ++EIA G+ Sbjct: 275 MKDIARYLGVSARSFHRRLSEHGVSFHTLTEETRRDLAVGLLRDKRHSLAEIAFLTGFAE 334 Query: 241 PSRFTERFHNRFNITPREIRKASRE 265 S FT F TP R+ + Sbjct: 335 QSSFTRAFKRWVGQTPASYRRGHAD 359 >UniRef50_C7RQL9 Transcriptional regulator, AraC family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RQL9_9PROT Length = 336 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 11/175 (6%) Query: 87 LIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSL 146 L ++ F L+ + + + L + Sbjct: 167 LRRPEPADPQPWPKLFGCNVRFGALEDSLLLDRDTVDAPLPSANVP----------LANT 216 Query: 147 GVNHVNHLLLSYSKQSLISRCYNLLLSEP-GTKWTANKVARYLYISVSTLHRRLASEGVS 205 ++ L ++SRC LL E +A + L +S TL R+L G++ Sbjct: 217 FDRILSEQLAHAFDDDIVSRCKAHLLRELTSGVPSAQETGTALGMSQRTLQRKLHELGLT 276 Query: 206 FQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 +QS+ D+ R A + T K ++E+ G+ S FT F ++P R Sbjct: 277 YQSLCDEARHELARRYLDDTNKSVTEVTFLLGFSEQSAFTRAFRRWSGMSPTTYR 331 >UniRef50_Q390L7 Transcriptional regulator, AraC family n=2 Tax=Burkholderia cepacia complex RepID=Q390L7_BURS3 Length = 348 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 77/252 (30%), Gaps = 21/252 (8%) Query: 16 MHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDN--NQIILFPCGYEFYIENYPEA 73 H + + R+ I W + +++ L Sbjct: 104 ARWQQYEHLIANVARMEVRVEATSVAIEWHDAPEPLGPLVDEVALTAIVQFARNITGTRH 163 Query: 74 GLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTK 133 G ++ + + + F L + L + + Sbjct: 164 GPDEVCFVHPSPADEQPYVDYFGCA-------VRFGQPVNRLAFPLHLLTQPLRQP---- 212 Query: 134 IQEHLAMGVLLSLGVNHVNHLLLSYSK-QSLISRCYNLLLSEP-GTKWTANKVARYLYIS 191 LL + + LL + L + + + ++A L++S Sbjct: 213 ------DDALLQMMERQASALLAELRQTDDLEQSVREAVARLLTQGEASIEQIAADLHVS 266 Query: 192 VSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNR 251 TLHRRLA G++F+ + +D R A+ + ++E+A GY S FT F Sbjct: 267 SRTLHRRLAELGLNFRILREDTRRRLAIDHLNDPRLTLAEVAWLLGYSEHSAFTRAFRRW 326 Query: 252 FNITPREIRKAS 263 +P++ R Sbjct: 327 TGESPQQWRSRQ 338 >UniRef50_A8S9Z6 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9Z6_9FIRM Length = 285 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 77/273 (28%), Gaps = 16/273 (5%) Query: 4 RGKTNLKIEEIRMHKHHEIHRVKPLMPA---LCRIRQGKKVINWETHTLTVDNNQIILFP 60 G + +V L ++QG ++ T I +F Sbjct: 13 HGAVRFPFNLYPCTIPGDFQQVALHWHESMELVFVKQGMGLVQVGVVTYPAYRGDIFIFA 72 Query: 61 CGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKL-----YTVTDQIRNKTSFFLPQNPEL 115 G + E + +L+ + L R L N Sbjct: 73 PGTLHALRQAEGQ-RMEYENIIFEPELLGGAEDLCAEKYLLPLQSGRLSLPVRLTPNDLC 131 Query: 116 IYCWEQLKTSVSRGFSTK------IQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYN 169 + K + + + L L L + + Sbjct: 132 YLQAAACLRELEDANRAKRPGYELLVKGALLRFLALLIAQGRQCLSTETADTQRLKTVLQ 191 Query: 170 LLLSEPGTKWTANKVARYLYISVSTLHRRLAS-EGVSFQSILDDVRLNNALSAIQTTVKP 228 L + A S S R G SF + L++ RLN A A++TT + Sbjct: 192 WLSAHYAEPLRVADAAGVCSFSASHFMRWFRQMTGQSFIAFLNEYRLNTAAEALRTTDET 251 Query: 229 ISEIARENGYKCPSRFTERFHNRFNITPREIRK 261 + IA G++ S F F F +TPR+ RK Sbjct: 252 VLTIASRCGFENLSYFNRAFKAHFGMTPRDYRK 284 >UniRef50_A0AX39 Transcriptional regulator, AraC family n=6 Tax=Proteobacteria RepID=A0AX39_BURCH Length = 364 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 85/238 (35%), Gaps = 11/238 (4%) Query: 25 VKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLP 84 V+ + P + RI + E T+++D L P + ++ Sbjct: 119 VRLIAPMIIRIDR-----AIEHTTVSIDFLDHTLPPPDVFLTFKLV----FFVQLARLAT 169 Query: 85 IDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLL 144 + + + + N + + L T V + + Sbjct: 170 RSPVRPLRVSWPLATGESNDSVAAYQAYFGVPVTDAPLATVVFAAEDIERPFLTENHKMW 229 Query: 145 SLGVNHVNHLLLSYSK-QSLISRCYN-LLLSEPGTKWTANKVARYLYISVSTLHRRLASE 202 + L + S+ R + LL + P + + ++R L +SV TL RRL E Sbjct: 230 QFFEPSLRQRLADLDRTASMAERVRSTLLETLPAGEVSMQVISRKLAVSVRTLQRRLQDE 289 Query: 203 GVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIR 260 G SFQ LD +R + A + T +EI+ G+ + F FH+ TP ++R Sbjct: 290 GTSFQQTLDTLRESLAYHYLGNTTMSSAEISFLLGFDDSNSFARAFHSWTGKTPHKVR 347 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.145 0.405 Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,607,272,324 Number of Sequences: 3077464 Number of extensions: 84958491 Number of successful extensions: 331780 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 15888 Number of HSP's successfully gapped in prelim test: 2232 Number of HSP's that attempted gapping in prelim test: 290454 Number of HSP's gapped (non-prelim): 21609 length of query: 265 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 139 effective length of database: 652,635,892 effective search space: 90716388988 effective search space used: 90716388988 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 92 (39.9 bits)