BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (180 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P45771 Uncharacterized protein yrdD n=427 Tax=Gammaprot... 372 e-102 UniRef50_Q7MGL0 DNA topoisomerase I-related protein n=77 Tax=Gam... 199 4e-50 UniRef50_A1SR33 DNA topoisomerase, type IA, zn finger domain pro... 179 5e-44 UniRef50_Q15ZX8 DNA topoisomerase, type IA, zn finger n=1 Tax=Ps... 167 2e-40 UniRef50_C4L7Y8 DNA topoisomerase type IA zn finger domain prote... 165 6e-40 UniRef50_Q0HPA2 DNA topoisomerase, type IA, zn finger domain pro... 164 1e-39 UniRef50_P46494 Uncharacterized protein HI0656.1 n=27 Tax=Pasteu... 163 3e-39 UniRef50_Q3A7H8 DNA topoisomerase n=13 Tax=Bacteria RepID=Q3A7H8... 155 6e-37 UniRef50_C6ALU6 DNA topoisomerase I n=3 Tax=Pasteurellaceae RepI... 155 7e-37 UniRef50_B5EJ79 DNA topoisomerase n=61 Tax=Proteobacteria RepID=... 154 1e-36 UniRef50_UPI0001698F80 DNA topoisomerase I n=1 Tax=Endoriftia pe... 152 4e-36 UniRef50_B0BQ81 Conserved DNA topoisomerase I-related protein n=... 147 2e-34 UniRef50_Q01N68 DNA topoisomerase n=7 Tax=Bacteria RepID=Q01N68_... 145 8e-34 UniRef50_UPI0000E0DBED putative DNA topoisomerase; C4 zinc finge... 144 2e-33 UniRef50_B5YKX8 DNA topoisomerase n=1 Tax=Thermodesulfovibrio ye... 140 2e-32 UniRef50_A3WII4 Zn-finger domain associated with topoisomerase t... 136 3e-31 UniRef50_A8ZW15 DNA topoisomerase n=3 Tax=Desulfobacteraceae Rep... 132 4e-30 UniRef50_B0VJB5 DNA topoisomerase n=1 Tax=Candidatus Cloacamonas... 132 5e-30 UniRef50_C1F6V0 DNA topoisomerase n=1 Tax=Acidobacterium capsula... 132 7e-30 UniRef50_Q2LT40 DNA topoisomerase n=2 Tax=Bacteria RepID=Q2LT40_... 129 5e-29 UniRef50_A0LDV2 DNA topoisomerase I n=7 Tax=Proteobacteria RepID... 126 3e-28 UniRef50_B9L7D9 DNA topoisomerase n=1 Tax=Nautilia profundicola ... 125 5e-28 UniRef50_A7NJW2 DNA topoisomerase I n=3 Tax=Bacteria RepID=A7NJW... 125 5e-28 UniRef50_A4P0V4 Putative uncharacterized protein n=1 Tax=Haemoph... 124 1e-27 UniRef50_C6BUQ9 DNA topoisomerase n=14 Tax=Desulfovibrionales Re... 124 2e-27 UniRef50_C6HWV0 DNA topoisomerase n=1 Tax=Leptospirillum ferrodi... 120 2e-26 UniRef50_C1ABE5 DNA topoisomerase n=1 Tax=Gemmatimonas aurantiac... 118 9e-26 UniRef50_Q1ILA9 DNA topoisomerase n=9 Tax=Bacteria RepID=Q1ILA9_... 118 1e-25 UniRef50_A6DDI1 DNA topoisomerase n=1 Tax=Caminibacter mediatlan... 117 2e-25 UniRef50_D0LR99 DNA topoisomerase n=169 Tax=cellular organisms R... 114 2e-24 UniRef50_A3EPL6 DNA topoisomerase n=2 Tax=Leptospirillum sp. Gro... 114 2e-24 UniRef50_Q9ZMV7 DNA topoisomerase 1 n=47 Tax=Epsilonproteobacter... 112 8e-24 UniRef50_A8RBU5 DNA topoisomerase n=9 Tax=Bacteria RepID=A8RBU5_... 109 5e-23 UniRef50_D1U7W1 DNA topoisomerase n=1 Tax=Desulfovibrio aespoeen... 109 5e-23 UniRef50_Q67PC7 DNA topoisomerase n=3 Tax=Bacteria RepID=Q67PC7_... 107 1e-22 UniRef50_Q5SM69 DNA topoisomerase n=2 Tax=Thermus thermophilus R... 107 2e-22 UniRef50_Q9KA23 DNA topoisomerase 1 n=107 Tax=Bacteria RepID=TOP... 105 5e-22 UniRef50_D1BMP2 DNA topoisomerase n=6 Tax=Firmicutes RepID=D1BMP... 103 3e-21 UniRef50_Q59046 DNA topoisomerase 1 n=9 Tax=Methanococcales RepI... 103 4e-21 UniRef50_C9RG81 DNA topoisomerase I n=2 Tax=Methanocaldococcus R... 103 4e-21 UniRef50_C1XK22 DNA topoisomerase n=1 Tax=Meiothermus ruber DSM ... 102 5e-21 UniRef50_Q7NGH1 DNA topoisomerase n=1 Tax=Gloeobacter violaceus ... 102 5e-21 UniRef50_C9LM02 DNA topoisomerase n=1 Tax=Dialister invisus DSM ... 102 7e-21 UniRef50_D1B572 DNA topoisomerase n=7 Tax=Campylobacterales RepI... 101 1e-20 UniRef50_Q4L5V2 DNA topoisomerase 1 n=155 Tax=Firmicutes RepID=T... 101 1e-20 UniRef50_Q1PYZ6 DNA topoisomerase n=1 Tax=Candidatus Kuenenia st... 101 1e-20 UniRef50_A9FRC6 DNA topoisomerase I n=1 Tax=Sorangium cellulosum... 100 4e-20 UniRef50_Q2FZ32 DNA topoisomerase 1 n=260 Tax=Bacteria RepID=TOP... 100 4e-20 UniRef50_Q256J1 DNA topoisomerase I-fused to SWI domain n=18 Tax... 100 4e-20 UniRef50_D1Y390 DNA topoisomerase n=1 Tax=Pyramidobacter piscole... 99 9e-20 UniRef50_C9LSJ2 DNA topoisomerase n=3 Tax=Veillonellaceae RepID=... 97 2e-19 UniRef50_UPI00006DC642 hypothetical protein CdifQ_04001409 n=1 T... 95 8e-19 UniRef50_B9L0B0 DNA topoisomerase n=1 Tax=Thermomicrobium roseum... 94 1e-18 UniRef50_B2KBN6 DNA topoisomerase n=1 Tax=Elusimicrobium minutum... 93 4e-18 UniRef50_C1SMY2 DNA topoisomerase n=1 Tax=Denitrovibrio acetiphi... 93 4e-18 UniRef50_D1C7I9 DNA topoisomerase n=8 Tax=Bacteria RepID=D1C7I9_... 92 6e-18 UniRef50_C1XZ86 Zn-finger domain-containing protein (Topoisomera... 92 6e-18 UniRef50_C9RBU3 DNA topoisomerase n=2 Tax=Bacteria RepID=C9RBU3_... 89 7e-17 UniRef50_A8SJ74 DNA topoisomerase n=1 Tax=Parvimonas micra ATCC ... 88 1e-16 UniRef50_D1B6D6 DNA topoisomerase I n=3 Tax=Synergistaceae RepID... 87 2e-16 UniRef50_B3EPW7 DNA topoisomerase n=12 Tax=Chlorobiaceae RepID=B... 87 4e-16 UniRef50_B5YFC7 DNA topoisomerase n=1 Tax=Dictyoglomus thermophi... 86 5e-16 UniRef50_C0QYG0 DNA topoisomerase n=2 Tax=Brachyspira RepID=C0QY... 85 1e-15 UniRef50_B0MRI8 DNA topoisomerase n=1 Tax=Eubacterium siraeum DS... 85 1e-15 UniRef50_A5D2W4 DNA topoisomerase n=4 Tax=Clostridiales RepID=A5... 83 5e-15 UniRef50_A9BI47 DNA topoisomerase n=3 Tax=Thermotogaceae RepID=A... 81 2e-14 UniRef50_C4L6T7 UvrD/REP helicase n=1 Tax=Exiguobacterium sp. AT... 80 3e-14 UniRef50_Q18KP8 DNA topoisomerase n=6 Tax=Halobacteriaceae RepID... 79 9e-14 UniRef50_B9LRP1 DNA topoisomerase n=4 Tax=Halobacteriaceae RepID... 78 1e-13 UniRef50_B8E2F6 DNA topoisomerase n=1 Tax=Dictyoglomus turgidum ... 77 3e-13 UniRef50_C0W9S2 DNA topoisomerase n=1 Tax=Acidaminococcus sp. D2... 77 3e-13 UniRef50_Q9JN65 DNA topoisomerase 1 n=2 Tax=Mycoplasma gallisept... 75 1e-12 UniRef50_B1GYR4 DNA topoisomerase n=1 Tax=uncultured Termite gro... 75 1e-12 UniRef50_A6VXG1 DNA topoisomerase type IA zn finger domain prote... 74 3e-12 UniRef50_A6G953 DNA topoisomerase n=1 Tax=Plesiocystis pacifica ... 73 5e-12 UniRef50_Q2RKN9 DNA topoisomerase I n=1 Tax=Moorella thermoaceti... 72 7e-12 UniRef50_Q5V1P3 DNA topoisomerase I n=1 Tax=Haloarcula marismort... 71 1e-11 UniRef50_B1AJN1 DNA topoisomerase I n=15 Tax=Ureaplasma RepID=B1... 71 2e-11 UniRef50_A1U3N5 DNA topoisomerase n=6 Tax=Gammaproteobacteria Re... 70 2e-11 UniRef50_Q8EVZ3 DNA topoisomerase n=1 Tax=Mycoplasma penetrans R... 70 4e-11 UniRef50_O83409 DNA topoisomerase 1 n=4 Tax=Treponema RepID=TOP1... 68 1e-10 UniRef50_Q3SMS7 DNA topoisomerase n=8 Tax=Proteobacteria RepID=Q... 66 4e-10 UniRef50_Q6XZ01 DNA topoisomerase n=2 Tax=Spiroplasma RepID=Q6XZ... 65 9e-10 UniRef50_UPI00016C444E DNA topoisomerase I n=1 Tax=Gemmata obscu... 62 7e-09 UniRef50_Q2BNY9 Helicase IV n=1 Tax=Neptuniibacter caesariensis ... 62 8e-09 UniRef50_P78032 DNA topoisomerase 1 n=2 Tax=Mycoplasma RepID=TOP... 62 8e-09 UniRef50_B1M0P4 DNA topoisomerase n=14 Tax=Alphaproteobacteria R... 61 1e-08 UniRef50_D2LPU9 DNA topoisomerase I n=3 Tax=Aciduliprofundum boo... 61 2e-08 UniRef50_D1BLQ5 DNA topoisomerase n=3 Tax=Veillonella RepID=D1BL... 61 2e-08 UniRef50_Q9HM08 DNA topoisomerase 1 n=4 Tax=Thermoplasmatales Re... 60 4e-08 UniRef50_B1VAJ5 DNA topoisomerase n=6 Tax=Acholeplasmataceae Rep... 59 5e-08 UniRef50_C6P2V7 DNA topoisomerase n=2 Tax=Proteobacteria RepID=C... 58 1e-07 UniRef50_B7I2H2 DNA topoisomerase n=4 Tax=Proteobacteria RepID=B... 57 2e-07 UniRef50_D2J7M2 Putative uncharacterized protein n=2 Tax=Staphyl... 57 4e-07 UniRef50_B8EMQ0 DNA topoisomerase n=153 Tax=Alphaproteobacteria ... 55 7e-07 UniRef50_A7IJK3 DNA topoisomerase type IA zn finger domain prote... 55 8e-07 UniRef50_A7ZI15 Helicase, UvrD family n=1 Tax=Escherichia coli E... 52 7e-06 UniRef50_A5UN47 Helicase, UvrD/REP family n=1 Tax=Methanobreviba... 52 7e-06 UniRef50_A0LAP8 DNA topoisomerase n=13 Tax=cellular organisms Re... 52 9e-06 UniRef50_O28469 DNA topoisomerase 1 n=8 Tax=Euryarchaeota RepID=... 52 9e-06 UniRef50_O27661 DNA topoisomerase 1 n=4 Tax=Methanobacteriaceae ... 52 1e-05 UniRef50_C6XEP4 DNA topoisomerase I n=1 Tax=Methylovorus sp. SIP... 52 1e-05 UniRef50_Q4QPE8 DNA topoisomerase n=23 Tax=Proteobacteria RepID=... 52 1e-05 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 51 1e-05 UniRef50_D2EGP7 DNA topoisomerase n=1 Tax=Candidatus Parvarchaeu... 51 2e-05 UniRef50_Q39UP7 DNA topoisomerase I:Restriction endonuclease n=3... 50 2e-05 UniRef50_A7VHI2 Putative uncharacterized protein n=1 Tax=Clostri... 50 3e-05 UniRef50_C1E9E3 DNA topoisomerase n=1 Tax=Micromonas sp. RCC299 ... 50 4e-05 UniRef50_D0D7V2 DNA topoisomerase n=1 Tax=Citreicella sp. SE45 R... 50 4e-05 UniRef50_C6AVQ0 UvrD/REP helicase n=2 Tax=Alphaproteobacteria Re... 50 4e-05 UniRef50_D0Z5F5 DNA topoisomerase n=1 Tax=Photobacterium damsela... 50 4e-05 UniRef50_Q9Z5W4 Topoisomerase n=1 Tax=Pseudomonas aeruginosa Rep... 50 5e-05 UniRef50_B7DM26 NERD domain protein n=1 Tax=Alicyclobacillus aci... 49 6e-05 UniRef50_C4NUW5 DNA topoisomerase n=12 Tax=Gammaproteobacteria R... 49 7e-05 UniRef50_A4WTK0 UvrD/REP helicase n=8 Tax=Rhodobacterales RepID=... 49 7e-05 UniRef50_C6PBC0 DNA topoisomerase type IA zn finger domain prote... 49 8e-05 UniRef50_A8SXH4 Putative uncharacterized protein n=1 Tax=Coproco... 49 8e-05 UniRef50_UPI0001BCB37F UvrD/REP helicase n=1 Tax=Fusobacterium p... 49 8e-05 UniRef50_C6A350 DNA topoisomerase I n=3 Tax=Euryarchaeota RepID=... 49 9e-05 UniRef50_A5FDL0 NERD domain protein n=1 Tax=Flavobacterium johns... 49 1e-04 UniRef50_Q3BT95 DNA topoisomerase n=14 Tax=Gammaproteobacteria R... 49 1e-04 UniRef50_B6RA74 DNA topoisomerase n=6 Tax=Alphaproteobacteria Re... 49 1e-04 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 48 1e-04 UniRef50_C9RSM0 DNA topoisomerase n=49 Tax=Bacilli RepID=C9RSM0_... 48 1e-04 UniRef50_C9Q4L2 DNA topoisomerase n=1 Tax=Vibrio sp. RC341 RepID... 48 1e-04 UniRef50_C8WG68 DNA topoisomerase type IA central domain protein... 48 2e-04 UniRef50_C5U8C5 DNA topoisomerase (Fragment) n=1 Tax=Methanocald... 48 2e-04 UniRef50_Q9KRB2 DNA topoisomerase 1 n=401 Tax=cellular organisms... 47 2e-04 UniRef50_Q64CK3 DNA topoisomerase n=2 Tax=environmental samples ... 47 2e-04 UniRef50_C7RD81 NERD domain protein n=4 Tax=Anaerococcus RepID=C... 47 2e-04 UniRef50_Q9X3X7 DNA topoisomerase 1 n=7 Tax=cellular organisms R... 47 3e-04 UniRef50_A3EW25 DNA topoisomerase n=3 Tax=Leptospirillum RepID=A... 47 3e-04 UniRef50_B5TTQ4 TraB n=3 Tax=environmental samples RepID=B5TTQ4_... 47 3e-04 UniRef50_B3PMD8 DNA topoisomerase I n=3 Tax=Mycoplasma RepID=B3P... 47 3e-04 UniRef50_UPI00016C5644 hypothetical protein GobsU_04089 n=1 Tax=... 47 3e-04 UniRef50_C3QAX1 NERD domain-containing protein n=6 Tax=Bacteroid... 47 3e-04 UniRef50_C6WSV7 DNA topoisomerase n=4 Tax=Proteobacteria RepID=C... 47 4e-04 UniRef50_A4JTK7 DNA topoisomerase n=2 Tax=Burkholderiales RepID=... 47 4e-04 UniRef50_C6BT42 DNA topoisomerase type IA central domain protein... 47 4e-04 UniRef50_UPI0001C41D8C DNA topoisomerase I TopA n=1 Tax=Methanob... 47 4e-04 UniRef50_C4LDL2 UvrD/REP helicase n=1 Tax=Tolumonas auensis DSM ... 47 4e-04 UniRef50_A6EQS9 Hypothetical membrane protein n=1 Tax=unidentifi... 46 5e-04 UniRef50_C5DA42 NERD domain protein n=1 Tax=Geobacillus sp. WCH7... 46 5e-04 UniRef50_A3D9J8 UvrD/REP helicase n=11 Tax=Gammaproteobacteria R... 46 5e-04 UniRef50_A8II62 DNA topoisomerase (Fragment) n=1 Tax=Chlamydomon... 46 6e-04 UniRef50_Q12Y06 DNA topoisomerase n=1 Tax=Methanococcoides burto... 46 7e-04 UniRef50_D2R6E6 DNA topoisomerase type IA zn finger domain prote... 46 7e-04 UniRef50_C5S684 DNA topoisomerase type IA zn finger domain prote... 45 8e-04 UniRef50_UPI00017C3C60 PREDICTED: hypothetical protein n=1 Tax=B... 45 9e-04 UniRef50_B9NSL7 UvrD/REP helicase n=1 Tax=Rhodobacteraceae bacte... 45 0.001 UniRef50_D2RGC8 DNA topoisomerase n=2 Tax=Archaeoglobaceae RepID... 45 0.001 UniRef50_UPI000174264A helicase, UvrD/REP family protein n=2 Tax... 45 0.001 UniRef50_A1VWJ4 UvrD/REP helicase n=1 Tax=Polaromonas naphthalen... 45 0.001 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 45 0.001 UniRef50_C5A9D2 DNA topoisomerase n=1 Tax=Burkholderia glumae BG... 45 0.002 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 45 0.002 UniRef50_Q1RIM1 DNA topoisomerase 1 n=35 Tax=Rickettsiales RepID... 44 0.002 UniRef50_Q04TE1 DNA topoisomerase n=4 Tax=Leptospira RepID=Q04TE... 44 0.002 UniRef50_A8F3N1 DNA topoisomerase n=2 Tax=Thermotogaceae RepID=A... 44 0.002 UniRef50_D0GKB0 DNA topoisomerase n=1 Tax=Leptotrichia goodfello... 44 0.002 UniRef50_Q5ZHE3 DNA topoisimerase n=9 Tax=root RepID=Q5ZHE3_9BACT 44 0.002 UniRef50_Q2B8U1 Putative uncharacterized protein n=1 Tax=Bacillu... 44 0.002 UniRef50_B0P1A6 Putative uncharacterized protein n=1 Tax=Clostri... 44 0.003 UniRef50_B2UHD2 DNA topoisomerase type IA zn finger domain prote... 44 0.003 UniRef50_UPI0001C3753D NERD domain protein n=1 Tax=Ruminococcus ... 44 0.004 UniRef50_B1L3G6 DNA topoisomerase I n=1 Tax=Candidatus Korarchae... 43 0.004 UniRef50_Q1UZD4 DNA topoisomerase n=4 Tax=Bacteria RepID=Q1UZD4_... 43 0.005 UniRef50_B0TT01 UvrD/REP helicase n=4 Tax=Shewanella RepID=B0TT0... 43 0.005 UniRef50_C4ZF87 DNA topoisomerase I n=1 Tax=Eubacterium rectale ... 43 0.005 UniRef50_Q46AN3 DNA topoisomerase n=3 Tax=Methanosarcina RepID=Q... 43 0.006 UniRef50_Q28MI5 DNA topoisomerase n=13 Tax=Rhodobacterales RepID... 42 0.007 UniRef50_D2MH56 Helicase IV n=1 Tax=Candidatus Poribacteria sp. ... 42 0.007 UniRef50_C4XEP1 DNA topoisomerase n=2 Tax=Mycoplasma RepID=C4XEP... 42 0.007 UniRef50_A4RYV6 DNA topoisomerase (Fragment) n=5 Tax=cellular or... 42 0.007 UniRef50_B5EPF0 DNA topoisomerase type IA zn finger domain prote... 42 0.008 UniRef50_A5FHK0 DNA topoisomerase III n=25 Tax=cellular organism... 42 0.008 UniRef50_B9TJX8 Putative uncharacterized protein n=1 Tax=Ricinus... 42 0.008 UniRef50_Q58078 Uncharacterized protein MJ0664 n=4 Tax=Methanoca... 42 0.009 UniRef50_B8L506 UvrD/REP helicase n=2 Tax=Bacteria RepID=B8L506_... 42 0.009 UniRef50_A1WZY5 DNA topoisomerase III n=6 Tax=Campylobacter RepI... 42 0.009 UniRef50_A2RKZ6 LtrE protein n=3 Tax=Lactococcus lactis RepID=A2... 42 0.009 UniRef50_UPI000179C790 UPI000179C790 related cluster n=3 Tax=Bos... 42 0.010 UniRef50_B1VJ64 DNA topoisomerase n=9 Tax=Gammaproteobacteria Re... 42 0.010 UniRef50_A6DJX4 DNA topoisomerase n=2 Tax=Bacteria RepID=A6DJX4_... 42 0.011 UniRef50_C7DGU7 Ribonucleoside-diphosphate reductase n=1 Tax=Can... 42 0.012 UniRef50_C7NA27 DNA topoisomerase n=20 Tax=Fusobacteriaceae RepI... 42 0.013 UniRef50_Q5UEY8 Putative uncharacterized protein n=2 Tax=uncultu... 42 0.013 UniRef50_B6YTB3 DNA topoisomerase n=4 Tax=Thermococcus RepID=B6Y... 42 0.013 UniRef50_A1TJM5 DNA topoisomerase n=55 Tax=Proteobacteria RepID=... 41 0.015 UniRef50_A4JFS2 DNA topoisomerase III n=4 Tax=Proteobacteria Rep... 41 0.016 UniRef50_Q8L288 DNA restriction n=1 Tax=Proteus vulgaris RepID=Q... 41 0.017 UniRef50_B9X9Z1 Restriction endonuclease n=1 Tax=bacterium Ellin... 41 0.017 UniRef50_C4V616 DNA topoisomerase n=1 Tax=Selenomonas flueggei A... 41 0.018 UniRef50_C0QM75 Multiple domain fusion protein (Zn-finger domain... 41 0.019 UniRef50_A5CF60 DNA topoisomerase n=2 Tax=Orientia tsutsugamushi... 41 0.019 UniRef50_C2XKX2 DNA topoisomerase n=7 Tax=Bacillus cereus group ... 41 0.021 UniRef50_Q6YRP6 Slr6108 protein n=1 Tax=Synechocystis sp. PCC 68... 41 0.021 UniRef50_C1ZHH2 Nuclease-related protein/topoisomerase C4 zinc f... 41 0.021 UniRef50_C5A9C5 UvrD/REP helicase n=2 Tax=Proteobacteria RepID=C... 41 0.023 UniRef50_O58356 DNA topoisomerase 1 n=2 Tax=Pyrococcus RepID=TOP... 41 0.023 UniRef50_A8S9Z2 Putative uncharacterized protein n=1 Tax=Faecali... 40 0.032 UniRef50_B0SF59 DNA topoisomerase n=3 Tax=Leptospira biflexa Rep... 40 0.033 UniRef50_B9XT21 Restriction endonuclease n=1 Tax=bacterium Ellin... 40 0.034 UniRef50_A3X5L1 Helicase IV n=1 Tax=Roseobacter sp. MED193 RepID... 40 0.038 UniRef50_C4ZL79 Restriction endonuclease n=4 Tax=Rhodocyclaceae ... 40 0.042 UniRef50_A5G3C3 DNA topoisomerase, type IA, zn finger domain pro... 39 0.057 UniRef50_B4S2M3 Putative transmembrane protein n=1 Tax=Alteromon... 39 0.075 UniRef50_C0GTU6 DNA topoisomerase type IA zn finger domain prote... 39 0.081 UniRef50_B6KRJ5 DNA topoisomerase n=3 Tax=Toxoplasma gondii RepI... 39 0.083 UniRef50_C2U731 5-methylcytosine-specific restriction enzyme MRR... 39 0.087 UniRef50_B0G7K1 Putative uncharacterized protein n=1 Tax=Dorea f... 39 0.090 >UniRef50_P45771 Uncharacterized protein yrdD n=427 Tax=Gammaproteobacteria RepID=YRDD_ECOLI Length = 180 Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE Sbjct: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR Sbjct: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE Sbjct: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 >UniRef50_Q7MGL0 DNA topoisomerase I-related protein n=77 Tax=Gammaproteobacteria RepID=Q7MGL0_VIBVY Length = 231 Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 93/164 (56%), Positives = 122/164 (74%), Gaps = 7/164 (4%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP+CG ELV++ GKHG FLGC+QYP CDYV+PL + DGHIVK L G CP CG LVLR Sbjct: 64 CPQCGGELVLKHGKHGAFLGCNQYPQCDYVKPLHQN-DGHIVKEL-GVACPECGNELVLR 121 Query: 75 QGRFGMFIGCINYPECEHTELIDKPD-----ETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 QGR+GMF+GC +YP C H E I++P+ + CP+C GHLV+R++R+GKTF++CD Sbjct: 122 QGRYGMFVGCSHYPLCHHIEPINQPEPEQNPKALFACPECGKGHLVERKTRFGKTFYACD 181 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 YP+C+FA+N P+ G C C +PLL+EKK A GVK CA+++C Sbjct: 182 NYPKCKFAVNLPPVKGHCETCGFPLLVEKKLASGVKLQCANRKC 225 >UniRef50_A1SR33 DNA topoisomerase, type IA, zn finger domain protein n=2 Tax=Psychromonas RepID=A1SR33_PSYIN Length = 187 Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 7/170 (4%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + E CP+C +EL IR+ K G FLGCS YP C Y+RPL ++ I KVL G C CG Sbjct: 14 KTKELCPECASELHIRNSKQGIFLGCSNYPECKYLRPLHEKSE--IEKVLPGTRCALCGK 71 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETA-----ITCPQCRTGHLVQRRSRYGKT 124 VL+QG++G+FIGC YPEC HTE + + E A + CP C+ GHL++R SR+GK Sbjct: 72 EQVLKQGKYGLFIGCSAYPECSHTEQLSEKKEIADEKESVPCPSCKNGHLIKRHSRFGKI 131 Query: 125 FHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 F++CD YP C++A+N KP+ CP+CH+P+L+E+KTA + C K CG Sbjct: 132 FYACDNYPSCKYAVNDKPVNQFCPDCHWPILVERKTASTFRIICPKKGCG 181 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 7/119 (5%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 KS + V C CG E V++ GK+G F+GCS YP C + L S I E Sbjct: 54 KSEIEKVLPGTRCALCGKEQVLKQGKYGLFIGCSAYPECSHTEQL--SEKKEIADEKESV 111 Query: 63 VCPAC-GANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 CP+C +L+ R RFG +F C NYP C++ + DKP CP C LV+R++ Sbjct: 112 PCPSCKNGHLIKRHSRFGKIFYACDNYPSCKYA-VNDKP--VNQFCPDCHWPILVERKT 167 >UniRef50_Q15ZX8 DNA topoisomerase, type IA, zn finger n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15ZX8_PSEA6 Length = 186 Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 73/160 (45%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C A L +R K+G F+GCS YP C+Y +PL S D + V+EG CP C + LV+R Sbjct: 21 CPVCNAPLQLRHSKNGAFIGCSDYPKCEYSKPLHDS-DNTELTVIEGSHCPECESELVIR 79 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +GR+GM+I C N+PEC + + D + CP C GHL +R ++YGK F+ CD+YP+C Sbjct: 80 KGRYGMYIACSNFPECHYVKSNKTQDTDKVECPSCHKGHLTKRANKYGKNFYPCDQYPQC 139 Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 +A+NF P+A CP+C +P++ EKK A G+ C ++CG Sbjct: 140 HYALNFTPVAHACPKCAWPVMQEKKAAAGLIWQCPERKCG 179 Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 TV CP+C +ELVIR G++G ++ CS +P C YV+ K+ + CP+ Sbjct: 61 LTVIEGSHCPECESELVIRKGRYGMYIACSNFPECHYVKSNKTQDTDKV-------ECPS 113 Query: 67 C-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 C +L R ++G F C YP+C H L P A CP+C + ++++ G Sbjct: 114 CHKGHLTKRANKYGKNFYPCDQYPQC-HYALNFTP--VAHACPKCAWPVMQEKKAAAGLI 170 Query: 125 FHSCDR 130 + +R Sbjct: 171 WQCPER 176 >UniRef50_C4L7Y8 DNA topoisomerase type IA zn finger domain protein n=4 Tax=Gammaproteobacteria RepID=C4L7Y8_TOLAT Length = 190 Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 79/163 (48%), Positives = 107/163 (65%), Gaps = 4/163 (2%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP+CG L +R KHG FLGC YP C ++RPL+ + I K+LE CP CG L ++ Sbjct: 23 CPECGGALSLRRSKHGLFLGCENYPDCQFMRPLQQQ-NVLIEKILEDSSCPECGKLLAIK 81 Query: 75 QGRFGMFIGCINYPECEHTELIDKP-DETAI--TCPQCRTGHLVQRRSRYGKTFHSCDRY 131 +GRFG+FIGC YPEC H E + +T++ CP C+ G L + SRYGKTF++C Y Sbjct: 82 KGRFGLFIGCTGYPECSHIETNNTTLADTSLLPDCPVCQQGQLQAKTSRYGKTFYACSNY 141 Query: 132 PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 P+C++AIN KPIA CP+C + LL+EK+T QG++ C K C Sbjct: 142 PKCKYAINDKPIAKACPQCGFSLLVEKRTRQGIRFCCPQKDCN 184 Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 11/120 (9%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS-ADGHIVKVLEGQVCPAC 67 + + SCP+CG L I+ G+ G F+GC+ YP C ++ ++ AD ++ CP C Sbjct: 65 ILEDSSCPECGKLLAIKKGRFGLFIGCTGYPECSHIETNNTTLADTSLLP-----DCPVC 119 Query: 68 -GANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 L + R+G F C NYP+C++ + DKP A CPQC LV++R+R G F Sbjct: 120 QQGQLQAKTSRYGKTFYACSNYPKCKYA-INDKP--IAKACPQCGFSLLVEKRTRQGIRF 176 >UniRef50_Q0HPA2 DNA topoisomerase, type IA, zn finger domain protein n=11 Tax=Alteromonadales RepID=Q0HPA2_SHESM Length = 187 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 74/165 (44%), Positives = 107/165 (64%), Gaps = 2/165 (1%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + E CP+CG+EL ++ KHG F+GC+ YP C Y RPL + +V+EG CP CG Sbjct: 18 KEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPL-VQHESIETQVIEGSKCPECGH 76 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDK-PDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 L ++ GRFG+FIGC YP C H E D+ D+ + CP+C+TG L R SR+GK+F++C Sbjct: 77 ELAVKSGRFGIFIGCTQYPSCTHIERPDQESDKPEVACPECKTGKLEHRTSRFGKSFYAC 136 Query: 129 DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 YP+C+F +N+ P+A CP C + +L+E+K A G++ C K C Sbjct: 137 SAYPKCKFIVNYPPVAETCPSCGFGILVERKGAAGMRLECPQKSC 181 Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 13/117 (11%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV-RPLKSSADGHIVKVLEGQVCPAC 67 V CP+CG EL ++SG+ G F+GC+QYP+C ++ RP + S + CP C Sbjct: 65 VIEGSKCPECGHELAVKSGRFGIFIGCTQYPSCTHIERPDQESDKPEV-------ACPEC 117 Query: 68 -GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 L R RFG F C YP+C+ +++ P A TCP C G LV+R+ G Sbjct: 118 KTGKLEHRTSRFGKSFYACSAYPKCKF--IVNYPP-VAETCPSCGFGILVERKGAAG 171 >UniRef50_P46494 Uncharacterized protein HI0656.1 n=27 Tax=Pasteurellaceae RepID=Y656A_HAEIN Length = 178 Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/174 (47%), Positives = 114/174 (65%), Gaps = 3/174 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M +S + E CP+CGA L I+ GK G FLGCS YP CDY+RPL+ S + ++K L+ Sbjct: 1 MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRS-EHKVLKTLD 59 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP CG L L+QG FGMFIGC +YPEC+ + E ITCP+C+TGHL+ RR R Sbjct: 60 -EICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLISRRGR 118 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPL-LIEKKTAQGVKHFCASKQC 173 GK F+ CD +P+C+F++ KP + CP CH+PL L++ + + CA+K C Sbjct: 119 QGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDGEKQIFQCANKTC 172 >UniRef50_Q3A7H8 DNA topoisomerase n=13 Tax=Bacteria RepID=Q3A7H8_PELCD Length = 841 Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 74/178 (41%), Positives = 109/178 (61%), Gaps = 3/178 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 ++K + T + + CP+CG LVI+ G+ G FL CS +P C Y PL V+ Sbjct: 577 ISKQDVTTEKTDRICPECGKPLVIKLGRSGRFLACSGFPDCRYTEPLAGQEREE--PVMS 634 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 Q C CGA ++++QGR+G F+ C YPEC++ + + KP ITCPQC G L++++SR Sbjct: 635 DQTCEKCGAPMLIKQGRYGKFLACSAYPECKNIQPLVKPKALGITCPQCGEGELMEKKSR 694 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPV 177 YGK F+SC+RYP+C++A+ PI CP+C +PL++EK T QG C + C V Sbjct: 695 YGKIFYSCNRYPKCKYALWDLPIEEPCPKCKFPLVVEKTTKRQGTFRKCPQEDCDWTV 752 >UniRef50_C6ALU6 DNA topoisomerase I n=3 Tax=Pasteurellaceae RepID=C6ALU6_AGGAN Length = 194 Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 80/183 (43%), Positives = 113/183 (61%), Gaps = 4/183 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + ++ E CP+CGA L I+ GK G FLGCS YP CDY++PL++S + +K+LE Sbjct: 13 MNQPLFQHTKHEEHCPQCGALLQIKQGKKGLFLGCSAYPQCDYLKPLQASLEVKTLKILE 72 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHT--ELIDKPDETAITCPQCRTGHLVQRR 118 Q CP CG L L+QG FGMFIGC NYP+C E + E + CP+C+ G LV RR Sbjct: 73 -QTCPQCGHLLALKQGHFGMFIGCSNYPDCHFVVHEEAEDEMEEHVPCPECKEGQLVARR 131 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPL-LIEKKTAQGVKHFCASKQCGKPV 177 R GK F++C+R+P C+F++ KP +CP+CH L L++K+ + C +K C Sbjct: 132 GRAGKLFYACNRFPHCKFSVPTKPYLVDCPQCHGNLALLKKQQGEQRTWLCVNKTCRHIF 191 Query: 178 SAE 180 + E Sbjct: 192 TTE 194 >UniRef50_B5EJ79 DNA topoisomerase n=61 Tax=Proteobacteria RepID=B5EJ79_ACIF5 Length = 851 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 6/165 (3%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD-GHIVKVLEGQVCPACGAN 70 E+CP+CG L +R G+HG F+ CS YP C+Y RP+ + V G+ CP CG Sbjct: 588 EEACPQCGKPLFLRLGRHGRFVACSGYPECNYTRPVDGPREPAEPV----GRDCPDCGKP 643 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 LV + GR+G FI C YPEC+H E + +P + +TCPQC G LV++RSRYGK F+SC+ Sbjct: 644 LVYKTGRYGRFISCSGYPECKHIEPLTQPKSSGVTCPQCGEGELVEKRSRYGKVFYSCNT 703 Query: 131 YPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCG 174 YP+C +A+ P+A CP C +P++IEK + G + C +C Sbjct: 704 YPKCTYAVWGPPVARPCPRCGWPIMIEKSGKRLGEQLACPQSECA 748 >UniRef50_UPI0001698F80 DNA topoisomerase I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F80 Length = 424 Score = 152 bits (385), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 65/138 (47%), Positives = 97/138 (70%), Gaps = 1/138 (0%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS-ADGHIVKVLEGQVCPACGAN 70 +E CPKCG +L IR G+HG F+GC+ YP CDY R L + ++ +V+EG+ CP CG+ Sbjct: 228 DEKCPKCGDQLSIRLGRHGRFIGCNNYPKCDYTRDLNADKSEQDEPQVVEGRSCPECGSP 287 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 LV+++GR+G FIGC YP C H E ++KP +T ++CP+C G L++R+S+ GK F+SC Sbjct: 288 LVIKRGRYGKFIGCSGYPNCRHIEPLEKPQDTGVSCPKCGNGTLLKRKSKRGKIFYSCST 347 Query: 131 YPECQFAINFKPIAGECP 148 YP+C +A+ +P+ G P Sbjct: 348 YPDCDYAVWNEPVDGPWP 365 Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 12/96 (12%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 V SCP+CG+ LVI+ G++G F+GCS YP C ++ PL+ D G CP CG Sbjct: 275 VVEGRSCPECGSPLVIKRGRYGKFIGCSGYPNCRHIEPLEKPQD-------TGVSCPKCG 327 Query: 69 ANLVLRQ--GRFGMFIGCINYPECEH---TELIDKP 99 +L++ R +F C YP+C++ E +D P Sbjct: 328 NGTLLKRKSKRGKIFYSCSTYPDCDYAVWNEPVDGP 363 >UniRef50_B0BQ81 Conserved DNA topoisomerase I-related protein n=3 Tax=Pasteurellaceae RepID=B0BQ81_ACTPJ Length = 177 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 3/177 (1%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S + + E CP+CG+ L I+ GK G FLGCS YP CDY++ L + ++K L ++ Sbjct: 2 SIFKSTKQVELCPECGSALQIKRGKQGLFLGCSSYPQCDYIKSLHQT--NRVIKDLT-EI 58 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 CP CG L L+QG FG+FIGC +YPEC T + ++ CP+C+T LV R+ R GK Sbjct: 59 CPECGHFLQLKQGNFGIFIGCSHYPECHFTVHDEAEEQEEFDCPECKTHKLVARKGRSGK 118 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 TF+ C +P C+F + KPIA CP+C ++ KK + CA+K C S E Sbjct: 119 TFYGCSGFPNCKFTLASKPIAKTCPQCQCSIVTLKKQRGKSMYLCANKSCQYLFSEE 175 >UniRef50_Q01N68 DNA topoisomerase n=7 Tax=Bacteria RepID=Q01N68_SOLUE Length = 934 Score = 145 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 92/167 (55%), Gaps = 7/167 (4%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 ESC CG +V++ G+ G F CS+YP C R + + V + CP C NLV Sbjct: 767 ESCENCGRPMVLKKGRFGTFFACSEYPDCKTTRQIGGTQKK---DVPLDEKCPQCDNNLV 823 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP 132 ++ GRFG F C NYP C++ K + CP+C G +++RRS+ GKTF+ C+RYP Sbjct: 824 MKYGRFGEFTACSNYPTCKYV----KQKTIGVKCPECSEGDIIERRSKKGKTFYGCNRYP 879 Query: 133 ECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 +C F KP+A +CPEC P +IEK G C + +C V A Sbjct: 880 DCTFVAWGKPVAEKCPECGSPYMIEKFLKSGAFWQCPNAECKHQVEA 926 Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 18/129 (13%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 +E CP+C LV++ G+ G F CS YP C YV+ + G CP C + Sbjct: 812 DEKCPQCDNNLVMKYGRFGEFTACSNYPTCKYVK-----------QKTIGVKCPECSEGD 860 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 ++ R+ + G F GC YP+C KP A CP+C + +++++ + G F C Sbjct: 861 IIERRSKKGKTFYGCNRYPDCTFVAW-GKP--VAEKCPECGSPYMIEKFLKSG-AFWQCP 916 Query: 130 RYPECQFAI 138 EC+ + Sbjct: 917 N-AECKHQV 924 Score = 39.7 bits (91), Expect = 0.042, Method: Composition-based stats. Identities = 15/25 (60%), Positives = 18/25 (72%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYP 39 C KCG LVI+ GKHG F+ C+ YP Sbjct: 590 CEKCGRPLVIKWGKHGSFIACTGYP 614 >UniRef50_UPI0000E0DBED putative DNA topoisomerase; C4 zinc finger domain protein n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0DBED Length = 193 Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C L IR FLGC+ YPAC+Y + L ++ I KV+ CP C L ++ Sbjct: 27 CPDCSNPLQIRYANKSAFLGCTTYPACEYKKSLTDNSITTI-KVMVDTPCPQCDQTLAIK 85 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +GR+G+F+ C+++P C I +T ++CPQC TGHL+++ ++YGK F+SC+ YP C Sbjct: 86 KGRYGLFVSCVDFPTCNFIGSIKHQTDTKVSCPQCHTGHLLEKTNKYGKKFYSCNAYPNC 145 Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQ 162 +F +N KP+A CPEC ++IE Q Sbjct: 146 KFVLNDKPVARTCPECQSTIMIESSATQ 173 Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 11/113 (9%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT------CPQCRTGHLVQR 117 CP C L +R F+GC YP CE+ + + T I CPQC L + Sbjct: 27 CPDCSNPLQIRYANKSAFLGCTTYPACEYKKSLTDNSITTIKVMVDTPCPQCDQT-LAIK 85 Query: 118 RSRYGKTFHSCDRYPECQFAINFK---PIAGECPECHYPLLIEKKTAQGVKHF 167 + RYG F SC +P C F + K CP+CH L+EK G K + Sbjct: 86 KGRYG-LFVSCVDFPTCNFIGSIKHQTDTKVSCPQCHTGHLLEKTNKYGKKFY 137 >UniRef50_B5YKX8 DNA topoisomerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKX8_THEYD Length = 777 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 64/166 (38%), Positives = 101/166 (60%), Gaps = 7/166 (4%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 ++ + C KCG ++VIR K PFL CS YP C R L ++ +G K L+ + CP CG Sbjct: 587 IKTSFKCEKCGKDMVIRWSKGVPFLACSGYPECKNTRSLNNNENGSTKKTLDKK-CPQCG 645 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 A LV+R G+ G FI C NYP+C+ T+ I + CPQC G +++++++ G+TF +C Sbjct: 646 AQLVVRNGKRGEFIACSNYPKCKFTQSI----TAQVKCPQC-GGDILKKQTKKGRTFWAC 700 Query: 129 DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHF-CASKQC 173 YP+C+F ++ +P+ ECP+C +++KK G + C +K C Sbjct: 701 ANYPKCKFTLSNEPVPAECPKCKSSYMLKKKDRNGTEFLICHNKAC 746 >UniRef50_A3WII4 Zn-finger domain associated with topoisomerase type I n=2 Tax=Idiomarina RepID=A3WII4_9GAMM Length = 172 Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 7/166 (4%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 ++CPKCG ELV++ FLGCS YP C+Y + L+ ++ I G CP CG +L Sbjct: 2 QACPKCGRELVVKHKGQQSFLGCSGYPDCEYTQGLREQSE--IEPESLGVPCPQCGNDLQ 59 Query: 73 LRQGRFGMFIGCINYPECEH-TELIDKPDETAITCPQC----RTGHLVQRRSRYGKTFHS 127 L+ GRFG+F+GC NYP+C+ E + ++ ++ CP+C RTG +V + R GK F S Sbjct: 60 LKSGRFGLFVGCSNYPDCDFIAEDPTQREQDSVPCPECEKAGRTGRVVAKTGRSGKQFFS 119 Query: 128 CDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 CD++P C F++ P+ CPEC +PLL+ K++ + C K C Sbjct: 120 CDQFPTCDFSLPLPPVNEACPECDFPLLMRKRSQGSERLVCPQKHC 165 >UniRef50_A8ZW15 DNA topoisomerase n=3 Tax=Desulfobacteraceae RepID=A8ZW15_DESOH Length = 758 Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 11/172 (6%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI------VKVLEGQVCPAC 67 SCP+CG EL I+ GK+GPFL CS YP C + R + G + + V EG+ C C Sbjct: 582 SCPECGKELKIKLGKNGPFLACSGYPDCKFSRNYARTDKGTVEPVEPDLTVAEGKSCEKC 641 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA---ITCPQCR-TGHLVQRRSRYGK 123 G+ +V++QGR+G F+ C YP+C+ T+ ++ A + CP+ G +V+++S+ GK Sbjct: 642 GSPMVVKQGRYGDFLACSAYPDCKSTQSLNSGANAAPIGVKCPEPGCNGDIVEKKSKRGK 701 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT-AQGVKHFCASKQCG 174 F+ C R+P+C FA KP+ CP+C P ++EK T +G CAS+ CG Sbjct: 702 VFYGCSRFPKCTFASWDKPVDMACPDCGAPFVVEKTTKKEGTVLTCASEGCG 753 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 10/125 (8%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC-- 64 TV +SC KCG+ +V++ G++G FL CS YP C + L S A+ + G C Sbjct: 630 LTVAEGKSCEKCGSPMVVKQGRYGDFLACSAYPDCKSTQSLNSGANAAPI----GVKCPE 685 Query: 65 PACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 P C ++V ++ + G +F GC +P+C DKP + A CP C +V++ ++ Sbjct: 686 PGCNGDIVEKKSKRGKVFYGCSRFPKCTFASW-DKPVDMA--CPDCGAPFVVEKTTKKEG 742 Query: 124 TFHSC 128 T +C Sbjct: 743 TVLTC 747 >UniRef50_B0VJB5 DNA topoisomerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJB5_9BACT Length = 739 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 57/140 (40%), Positives = 85/140 (60%), Gaps = 7/140 (5%) Query: 22 LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI---VKVLEGQVCPACGANLVLRQGRF 78 ++I+ K G FL CS++P C + DG+I V + CP CG+ L+LR G++ Sbjct: 585 MLIKHSKRGDFLSCSRFPQCKNTKNFTRDEDGNIKIFVPTPLNENCPQCGSPLMLRTGKY 644 Query: 79 GMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 G FI C NYP+C++ +P I CP+C G L R+S+ G+TF+SC+RYPEC++ Sbjct: 645 GEFIACSNYPKCKYA----RPKTLGIKCPECGIGELTARKSKKGRTFYSCNRYPECKYIT 700 Query: 139 NFKPIAGECPECHYPLLIEK 158 N KP+ CP+C P ++EK Sbjct: 701 NDKPLPISCPKCGNPYIVEK 720 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 19/126 (15%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 NE+CP+CG+ L++R+GK+G F+ CS YP C Y RP K L G CP CG Sbjct: 627 NENCPQCGSPLMLRTGKYGEFIACSNYPKCKYARP----------KTL-GIKCPECGIGE 675 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 L R+ + G F C YPEC++ DKP I+CP+C ++V++ SR C Sbjct: 676 LTARKSKKGRTFYSCNRYPECKYIT-NDKP--LPISCPKCGNPYIVEKYSREKGKIKIC- 731 Query: 130 RYPECQ 135 P C+ Sbjct: 732 --PNCK 735 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 14/114 (12%) Query: 61 GQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI----------TCPQC 109 G VC C ++++ + G F+ C +P+C++T+ + ++ I CPQC Sbjct: 574 GIVCDVCKQGTMLIKHSKRGDFLSCSRFPQCKNTKNFTRDEDGNIKIFVPTPLNENCPQC 633 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQG 163 + L+ R +YG+ F +C YP+C++A K + +CPEC L +K+ +G Sbjct: 634 GSP-LMLRTGKYGE-FIACSNYPKCKYA-RPKTLGIKCPECGIGELTARKSKKG 684 >UniRef50_C1F6V0 DNA topoisomerase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F6V0_ACIC5 Length = 878 Score = 132 bits (331), Expect = 7e-30, Method: Composition-based stats. Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 10/166 (6%) Query: 18 CGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CG +V+R+G GPF+ C Y P C VR L + L+ + CP CG LVLR Sbjct: 662 CGRVMVLRNGPWGPFMACPGYNEDPPCKTVRRLNQKQQQKPPQPLD-EKCPKCGEQLVLR 720 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 G++G FI C YP+C++ K + + CPQC+ G +V++++R G F+ C YP+C Sbjct: 721 HGQYGEFISCSGYPKCKYI----KQNTIGMKCPQCKVGEIVEKKARRGNFFYGCSEYPKC 776 Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 F N+KP+ +CPEC L+EK GV C + + KP + E Sbjct: 777 DFTANYKPVDRKCPECGSAYLMEKTLKSGVYLVCPNNK--KPSAEE 820 >UniRef50_Q2LT40 DNA topoisomerase n=2 Tax=Bacteria RepID=Q2LT40_SYNAS Length = 769 Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 65/169 (38%), Positives = 97/169 (57%), Gaps = 17/169 (10%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL-------KSSADGHIVKVLEGQVCPAC 67 C KC + +VI+ GK+G F+ CS YPAC R + +S+ G + VCP C Sbjct: 603 CEKCQSPMVIKWGKNGKFIACSNYPACKNTRNIEQGEGVERSAKGGEMTDT----VCPKC 658 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQRRSRYGKTFH 126 G N++++ GRFG F+GC YP+C+HT P + CPQ G ++++R++ G++F Sbjct: 659 GKNMLIKHGRFGRFLGCSGYPDCKHT----MPISLGVKCPQEGCDGEIIEKRTKKGRSFF 714 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKT-AQGVKHFCASKQCG 174 C YP C FA+ KPI CP+C+ P L+EK + +G C +K CG Sbjct: 715 GCSNYPNCTFAVWDKPIPEPCPQCNSPFLVEKYSRTEGSYKACPNKDCG 763 >UniRef50_A0LDV2 DNA topoisomerase I n=7 Tax=Proteobacteria RepID=A0LDV2_MAGSM Length = 783 Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 101/174 (58%), Gaps = 2/174 (1%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD-GHIVKVLE 60 +K + T + +E CPKCGA L I+ G+ G F C+ YP C + PL + L Sbjct: 595 SKEEVTTEQIDEPCPKCGAPLSIKLGRFGKFKACTGYPECKHTEPLNKEEEVSRPEPELT 654 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 C CG +++++GR+G + GC PEC++ + ++KP +T + CP C G ++++SR Sbjct: 655 DIPCDKCGKPMLIKEGRYGKYYGCSGAPECKNNQPLNKPRDTGVACPSCGQGTFLEKKSR 714 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT-AQGVKHFCASKQC 173 GK F+SC YP+C+ A+ +P+ CP+C P + +K T +G +H C ++ C Sbjct: 715 RGKIFYSCSNYPKCKQALWDEPLEIPCPKCQAPFVTKKVTKTRGTEHICVAEGC 768 >UniRef50_B9L7D9 DNA topoisomerase n=1 Tax=Nautilia profundicola AmH RepID=B9L7D9_NAUPA Length = 728 Score = 125 bits (315), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 61/148 (41%), Positives = 96/148 (64%), Gaps = 8/148 (5%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +E+CP CG+ LVIR G+ G F+ CS YP C Y RPL+ S + V C CGA++ Sbjct: 567 DETCPLCGSPLVIRKGRFGEFIACSSYPKCKYTRPLEESKEEKKTDV----KCDKCGADM 622 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDE-TAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 V+++G+ G F+ C NYP+C++T+ ++ P+ + CP+C G +V+R+SR G+ F+ C Sbjct: 623 VVKKGKSGEFLACSNYPKCKNTKPLNAPEVLDDVKCPEC-GGDIVKRKSRRGE-FYGCAN 680 Query: 131 YPECQFAINFKPIAGECPECHYPLLIEK 158 YP+C F ++P+ +CPEC Y L+ E+ Sbjct: 681 YPKCNFISKYRPVNKKCPECGY-LMAER 707 Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 64/119 (53%), Gaps = 11/119 (9%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + + C KCGA++V++ GK G FL CS YP C +PL + +VL+ CP CG Sbjct: 610 KTDVKCDKCGADMVVKKGKSGEFLACSNYPKCKNTKPLNAP------EVLDDVKCPECGG 663 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 ++V R+ R G F GC NYP+C I K CP+C G+L+ R+ K + C Sbjct: 664 DIVKRKSRRGEFYGCANYPKC---NFISKYRPVNKKCPEC--GYLMAERTYRKKDVYEC 717 Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 19/89 (21%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV---RPLKSSADGHIVKVLEGQVCP 65 V ++ CP+CG ++V R + G F GC+ YP C+++ RP+ + CP Sbjct: 652 VLDDVKCPECGGDIVKRKSRRGEFYGCANYPKCNFISKYRPV-------------NKKCP 698 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTE 94 CG + R R CI +C+H E Sbjct: 699 ECGYLMAERTYRKKDVYECI---KCKHRE 724 >UniRef50_A7NJW2 DNA topoisomerase I n=3 Tax=Bacteria RepID=A7NJW2_ROSCS Length = 836 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 23/175 (13%) Query: 14 SCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ------VCPA 66 +CP+C +L ++ G++G FL C++YP CD+ +DG IV +C Sbjct: 603 TCPRCNQGQLAVKFGRNGEFLACNRYPECDFTSDFHRDSDGRIVLDAPASPETSDVLCDV 662 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDK-------PDETAITCPQCRTGHLVQRRS 119 CG ++L++ RFG F+GC YPEC++T +DK P T +TCP+C G L++RR Sbjct: 663 CGRPMILKKSRFGPFLGCSGYPECKNTRRLDKQGKPAPLPKATGVTCPKCGQGELLERRG 722 Query: 120 RYGKTFHSCDRYPECQFAIN-------FKPIAGEC--PECHYPLLIEKKTAQGVK 165 ++G+ F C+RYP+C + +N + P A E P+ P + K K Sbjct: 723 KFGRPFFGCNRYPKCDYLVNSLDEVAHYTPDANEASKPQAEEPTATDAKATPARK 777 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 17/73 (23%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK-----------PIAGE---- 146 T +TCP+C G L + R G+ F +C+RYPEC F +F P + E Sbjct: 600 TDLTCPRCNQGQLAVKFGRNGE-FLACNRYPECDFTSDFHRDSDGRIVLDAPASPETSDV 658 Query: 147 -CPECHYPLLIEK 158 C C P++++K Sbjct: 659 LCDVCGRPMILKK 671 >UniRef50_A4P0V4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4P0V4_HAEIN Length = 154 Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/125 (49%), Positives = 81/125 (64%), Gaps = 2/125 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M +S + E CP+CGA L I+ GK G FLGCS YP CDY+RPL+ + ++K L+ Sbjct: 1 MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQR-VEHKVLKTLD 59 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP CG L L+QG FGMFIGC +YPEC+ + E I CP+C+TGHL+ RR R Sbjct: 60 -EICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKIACPECKTGHLISRRGR 118 Query: 121 YGKTF 125 GK F Sbjct: 119 QGKIF 123 Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 10/112 (8%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI-----TCPQCRTGHL 114 + + CP CGA L ++QG+ G+F+GC YPEC++ + + + + CP+C G+L Sbjct: 11 QQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRVEHKVLKTLDEICPKC--GNL 68 Query: 115 VQRRSRYGKTFHSCDRYPECQFAINFKPIAG---ECPECHYPLLIEKKTAQG 163 +Q + F C YPEC F + + + CPEC LI ++ QG Sbjct: 69 LQLKQGSFGMFIGCSHYPECDFVVREESESEEKIACPECKTGHLISRRGRQG 120 >UniRef50_C6BUQ9 DNA topoisomerase n=14 Tax=Desulfovibrionales RepID=C6BUQ9_DESAD Length = 800 Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/172 (40%), Positives = 104/172 (60%), Gaps = 17/172 (9%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE---GQV---CPAC 67 +C KCG+ + I+ G FLGC+ YP C ++ + +G I KV+E Q+ CP C Sbjct: 627 TCEKCGSAMAIKRSNRGEFLGCTGYPDCRNIKNFERDDEGKI-KVVETPTAQIVGKCPDC 685 Query: 68 G-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQ--CRTGHLVQRRSRYGK 123 +L+++ R G FI C NYP+C+H KP T + CP+ C+ G LV++ SR GK Sbjct: 686 DDGDLIIKHARTGSRFIACSNYPDCKHA----KPFSTGVKCPREGCK-GELVEKSSRRGK 740 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT-AQGVKHFCASKQCG 174 F+SCD+YP+C +A+ + PI G CP+C +P+L++K T A+G C K CG Sbjct: 741 LFYSCDQYPDCDYAVWYPPIDGPCPKCGHPVLVKKTTRAKGEHIACPEKGCG 792 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 30/138 (21%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE-------------TAITCP 107 G C C + +V++ GR G F+GC NYPEC++ + ++ T +TC Sbjct: 570 GITCDKCESPMVIKFGRTGEFLGCSNYPECKNIVNFTRDEKGKIVVLEEEPPEETGVTCE 629 Query: 108 QCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---------------PIAGECPECHY 152 +C + ++R +R F C YP+C+ NF+ I G+CP+C Sbjct: 630 KCGSAMAIKRSNR--GEFLGCTGYPDCRNIKNFERDDEGKIKVVETPTAQIVGKCPDCDD 687 Query: 153 PLLIEKKTAQGVKHFCAS 170 LI K G + S Sbjct: 688 GDLIIKHARTGSRFIACS 705 >UniRef50_C6HWV0 DNA topoisomerase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWV0_9BACT Length = 865 Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 87/166 (52%), Gaps = 10/166 (6%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV--CPACGAN 70 E C CG +++R G+ G FL CS YPAC RP L + CPACG Sbjct: 693 EVCQTCGKPMIVRKGRFGTFLACSDYPACKTTRPWPPKGQPSPPVPLPADLPPCPACGGA 752 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC--PQCRTGHLVQRRSRYGKTFHSC 128 +V++ GRFG F+ C NYP C+ T +P T I C P C G +V RR + G F+ C Sbjct: 753 MVVKSGRFGSFLSCANYPACKTT----RPLPTGIRCTRPGC-DGEIVPRRGKRG-VFYGC 806 Query: 129 DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 RYPEC +P+A CP C + L+EKKT ++ C K CG Sbjct: 807 SRYPECDRTYPGRPVARPCPSCGHAFLMEKKTGGKLRLVCPEKDCG 852 >UniRef50_C1ABE5 DNA topoisomerase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE5_GEMAT Length = 816 Score = 118 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 79/142 (55%), Gaps = 10/142 (7%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYP-ACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 E CP CG +LV + G GPF+ C +P AC Y RP+K L +C CGA + Sbjct: 644 ERCPDCGGKLVAKGGFFGPFVACENHPKACKYTRPIKGEKKP---AELTNYMCQECGAPM 700 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR-YGKTFHSCDR 130 V+R GR G F+GC +P+C T + T + CP+ G + +RRS+ GK F+ C+ Sbjct: 701 VIRHGRSGDFLGCSKFPKCRGTRSM----PTGVKCPK-DGGEIAERRSKKRGKAFYGCEN 755 Query: 131 YPECQFAINFKPIAGECPECHY 152 YP C F + KP+A CPEC Y Sbjct: 756 YPNCDFVVWDKPVAETCPECGY 777 Score = 69.3 bits (168), Expect = 6e-11, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 16/119 (13%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 N C +CGA +VIR G+ G FLGCS++P C R + + G CP G + Sbjct: 690 NYMCQECGAPMVIRHGRSGDFLGCSKFPKCRGTRSMPT-----------GVKCPKDGGEI 738 Query: 72 VLRQG--RFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 R+ R F GC NYP C+ + DKP A TCP+C + ++ +F C Sbjct: 739 AERRSKKRGKAFYGCENYPNCDFV-VWDKP--VAETCPECGYVGAEAKSNKTRGSFRKC 794 >UniRef50_Q1ILA9 DNA topoisomerase n=9 Tax=Bacteria RepID=Q1ILA9_ACIBL Length = 853 Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 6/161 (3%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 E C CG +V++ G+ G F+ C+ YP C R L + I V + CP C LV Sbjct: 654 EYCENCGRGMVLKRGRFGQFMACTGYPECKTTRRLDQAK--KIPDVPLDEKCPECTRPLV 711 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP 132 LR GRFG F+ C YPEC+ K + + CPQC+ G +V++++R G F+ C RYP Sbjct: 712 LRHGRFGEFVSCSGYPECKWI----KQNFVGVKCPQCKEGEIVEKKARRGNFFYGCARYP 767 Query: 133 ECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 +C F KP+A CP+C ++EKK G C + + Sbjct: 768 KCDFTSANKPVAQPCPKCGSEYVLEKKLKSGTYLTCPNNKA 808 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 17/119 (14%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 +E CP+C LV+R G+ G F+ CS YP C +++ + G CP C Sbjct: 700 DEKCPECTRPLVLRHGRFGEFVSCSGYPECKWIK-----------QNFVGVKCPQCKEGE 748 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 +V ++ R G F GC YP+C+ T +KP A CP+C + ++++++ + G T+ +C Sbjct: 749 IVEKKARRGNFFYGCARYPKCDFTS-ANKP--VAQPCPKCGSEYVLEKKLKSG-TYLTC 803 >UniRef50_A6DDI1 DNA topoisomerase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDI1_9PROT Length = 725 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 91/144 (63%), Gaps = 10/144 (6%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI-VKVLEGQVCPACGANL 71 E CP+CG LVIR G+ G F+ CS +P C Y RP++ + + VK C CGA++ Sbjct: 568 ELCPECGNPLVIRKGRFGEFIACSNFPKCKYTRPIEEKEEKKVDVK------CDKCGADM 621 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETA-ITCPQCRTGHLVQRRSRYGKTFHSCDR 130 V+++G+ G F+ C NYPEC++T+ ++ P+ + CP+C G +++R+SR G+ F+ C Sbjct: 622 VIKRGKRGEFLACSNYPECKNTKPLNPPEVLEDVKCPEC-GGDIIKRKSRRGE-FYGCGN 679 Query: 131 YPECQFAINFKPIAGECPECHYPL 154 YP+C F ++P+ +C EC Y + Sbjct: 680 YPKCNFISKYRPVNEKCDECGYMM 703 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 16/80 (20%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV---RPLKSSADGHIVKVLEGQVCP 65 V + CP+CG +++ R + G F GC YP C+++ RP+ + C Sbjct: 651 VLEDVKCPECGGDIIKRKSRRGEFYGCGNYPKCNFISKYRPV-------------NEKCD 697 Query: 66 ACGANLVLRQGRFGMFIGCI 85 CG + R R + CI Sbjct: 698 ECGYMMAKRTYRNKEVLECI 717 >UniRef50_D0LR99 DNA topoisomerase n=169 Tax=cellular organisms RepID=D0LR99_HALO1 Length = 894 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 89/162 (54%), Gaps = 10/162 (6%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE---GQVCPACGANL 71 C KCGA +VI+ G++G FL C YP C + + + DG V E + C CGA + Sbjct: 724 CEKCGAPMVIKWGRNGSFLACQAYPDCRNTKEINRNPDGSFEIVPEQTTDETCSECGAPM 783 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQRRSRYGKTFHSCDR 130 V+++GRFG F+ C YPEC++T+ P + CP+ G L ++RSR GK F+ C Sbjct: 784 VVKRGRFGAFLACSTYPECKNTQ----PISLGVDCPKDGCGGFLTEKRSRRGKPFYGCSN 839 Query: 131 YPE--CQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS 170 Y + C F +PIA CP C L++K+T +G C S Sbjct: 840 YSKTGCDFVTWDRPIAEACPVCEASFLVKKETRRGTTVRCLS 881 Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 21/126 (16%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP--ACG 68 +E+C +CGA +V++ G+ G FL CS YP C +P+ D CP CG Sbjct: 772 TDETCSECGAPMVVKRGRFGAFLACSTYPECKNTQPISLGVD-----------CPKDGCG 820 Query: 69 ANLVLRQGRFGM-FIGCINYPE--CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 L ++ R G F GC NY + C+ D+P A CP C LV++ +R G T Sbjct: 821 GFLTEKRSRRGKPFYGCSNYSKTGCDFVTW-DRP--IAEACPVCEASFLVKKETRRGTTV 877 Query: 126 H--SCD 129 SCD Sbjct: 878 RCLSCD 883 >UniRef50_A3EPL6 DNA topoisomerase n=2 Tax=Leptospirillum sp. Group II RepID=A3EPL6_9BACT Length = 850 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 90/167 (53%), Gaps = 11/167 (6%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI--VKVLEGQVCPACG 68 E C C A +VI+ G+ G FL CS+YP C RP A+ + V E VCP C Sbjct: 684 EGEVCHVCQAPMVIKKGRFGTFLACSRYPECKTTRPWPPKAEASLPAVSPAEAPVCPECS 743 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP--QCRTGHLVQRRSRYGKTFH 126 + +V ++GRFG F C YPEC+ T +P T CP C+ G LV RR + G TF+ Sbjct: 744 SPMVQKRGRFGSFWACSRYPECKGT----RPLATGHPCPVKGCK-GELVPRRGKRG-TFY 797 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C RYPEC F +N +P+ CP+C +P + + + V C ++ C Sbjct: 798 GCSRYPECTFLLNGEPVRDPCPDCQFPYRV-RTGKKSVDLVCPNEAC 843 >UniRef50_Q9ZMV7 DNA topoisomerase 1 n=47 Tax=Epsilonproteobacteria RepID=TOP1_HELPJ Length = 736 Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 15/176 (8%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + +SCPKCG ELV ++ ++G F+ C+ YP C Y++ +++ D + ++C CG Sbjct: 567 KTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYIKQTENANDEA-----KQELCEKCGG 621 Query: 70 NLVLRQGRFGMFIGCINYPECEHTE-LIDKPD--ET--AITCPQCRTGHLVQRRSRYGKT 124 +V + R G F+ C NYPEC++T+ L + P+ ET + CP+C G + +RS+ G + Sbjct: 622 EMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEGVKCPEC-GGDIALKRSKKG-S 679 Query: 125 FHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 F+ C+ YP+C F N KPI C +CHY L+ E+ + H C QC + V E Sbjct: 680 FYGCNNYPKCNFLSNHKPINKRCEKCHY-LMSERIYRKKKAHECI--QCKERVFLE 732 >UniRef50_A8RBU5 DNA topoisomerase n=9 Tax=Bacteria RepID=A8RBU5_9FIRM Length = 718 Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 82/132 (62%), Gaps = 14/132 (10%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 R E CP+CG+ELV R G++G F+ C +P+C Y + + + +VCP CG+ Sbjct: 572 RTGELCPECGSELVYRVGRYGKFISCINFPSCRYTKSEEEEENAS------DEVCPHCGS 625 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDE----TAITCPQCRTGH-LVQRRSRYGKT 124 +V+++GR+G F+ C NYP C++ + +KP E T CP+C GH LV+R+SR+G T Sbjct: 626 KMVMKKGRYGSFLACSNYPTCKYIK-NNKPKEEPVPTGENCPEC--GHPLVKRKSRFGTT 682 Query: 125 FHSCDRYPECQF 136 F C YP+C++ Sbjct: 683 FVGCSNYPKCRY 694 Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 18/126 (14%) Query: 46 PLKSSADGHIVKV-LE--GQVCPACGANLVLRQGRFGMFIGCINYPECEHTE----LIDK 98 PL +A H+ K LE G++CP CG+ LV R GR+G FI CIN+P C +T+ + Sbjct: 556 PLLENAYEHMEKKELERTGELCPECGSELVYRVGRYGKFISCINFPSCRYTKSEEEEENA 615 Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI-----AGE-CPECHY 152 DE CP C + +V ++ RYG +F +C YP C++ N KP GE CPEC + Sbjct: 616 SDE---VCPHCGS-KMVMKKGRYG-SFLACSNYPTCKYIKNNKPKEEPVPTGENCPECGH 670 Query: 153 PLLIEK 158 PL+ K Sbjct: 671 PLVKRK 676 Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 13 ESCPKCGAELVIRSGKHGP-FLGCSQYPACDYV 44 E+CP+CG LV R + G F+GCS YP C Y+ Sbjct: 663 ENCPECGHPLVKRKSRFGTTFVGCSNYPKCRYI 695 >UniRef50_D1U7W1 DNA topoisomerase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U7W1_9DELT Length = 821 Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 89/169 (52%), Gaps = 14/169 (8%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ------VCPACG 68 C KCG + I+ + G FLGC+ YP C + + +G I V+E + CP CG Sbjct: 633 CEKCGKPMAIKQSRRGEFLGCTGYPDCKNIVNFQRDENGAI-SVIESEKLQVVGSCPDCG 691 Query: 69 ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQRRSRYGKTFH 126 L+L++ R G FI C NYP+C + P T + CP + G LV++ SR GK F Sbjct: 692 GELLLKKARTGSRFIACSNYPDCTYA----APFSTGVPCPVEGCAGELVEKSSRRGKIFF 747 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHF-CASKQCG 174 SC YP+C +A+ P+ CP+C +P+L K T +H C K CG Sbjct: 748 SCSAYPKCDYAVWNWPVNEPCPKCGHPILTRKTTKDKGEHLACPQKGCG 796 Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 30/124 (24%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-------------PDETAITCPQC 109 VC CG + ++ G+ G F+GC +P C + + P+ET + C +C Sbjct: 577 VCENCGKPMSIKFGKTGEFLGCTGFPTCRTIKNFTRDENGAIRIVERETPEETGVECEKC 636 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---------------PIAGECPECHYPL 154 + ++SR G+ F C YP+C+ +NF+ + G CP+C L Sbjct: 637 GKPMAI-KQSRRGE-FLGCTGYPDCKNIVNFQRDENGAISVIESEKLQVVGSCPDCGGEL 694 Query: 155 LIEK 158 L++K Sbjct: 695 LLKK 698 >UniRef50_Q67PC7 DNA topoisomerase n=3 Tax=Bacteria RepID=Q67PC7_SYMTH Length = 735 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 6/120 (5%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG- 122 C CG +V++ GRFG F+ C +PEC+ T+ I +ET +TCP C TG +V+R+S+ G Sbjct: 612 CEKCGRLMVVKHGRFGKFLACPGFPECKSTKPI--LEETGVTCPACGTGRIVERKSKKGG 669 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCG--KPVSA 179 + F+ C YP+C F KP+ CPEC P L+EK+ + G+ H C CG +PV + Sbjct: 670 RRFYGCTNYPDCNFVSWEKPVNRLCPECGAPYLVEKRIKELGLSHVCKQPDCGYVEPVES 729 Score = 73.6 bits (179), Expect = 3e-12, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 16/125 (12%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-ANLVL 73 C KCG +V++ G+ G FL C +P C +P+ G CPACG +V Sbjct: 612 CEKCGRLMVVKHGRFGKFLACPGFPECKSTKPILEET---------GVTCPACGTGRIVE 662 Query: 74 RQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 R+ + G F GC NYP+C +KP CP+C +LV++R + H C + Sbjct: 663 RKSKKGGRRFYGCTNYPDCNFVSW-EKPVNR--LCPECGAPYLVEKRIKELGLSHVC-KQ 718 Query: 132 PECQF 136 P+C + Sbjct: 719 PDCGY 723 >UniRef50_Q5SM69 DNA topoisomerase n=2 Tax=Thermus thermophilus RepID=Q5SM69_THET8 Length = 830 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 92/163 (56%), Gaps = 16/163 (9%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 ++CP+CG L ++ ++G FLGC+ YP C Y PL+ I G+ CP CG L Sbjct: 588 KKTCPRCGRPLELKVSRYGQFLGCTGYPECTYTEPLERREAEPI-----GEACPKCGRPL 642 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 + ++GR+G FI C YPEC++T D T TCP+C G ++++RSR G+ ++ C+ Sbjct: 643 LRKEGRYGTFIACSGYPECDYTR--DDGTPTGHTCPKC-GGRVLEKRSRKGRPYYKCENN 699 Query: 132 PECQFAINFKPIAGE-CPECHYPLLIEKKTAQGVKHFCASKQC 173 C F ++F P+ E CP C +PL+ +G K C + C Sbjct: 700 -ACDF-LSFYPLLEEACPACGWPLV-----KKGEKALCLNPAC 735 >UniRef50_Q9KA23 DNA topoisomerase 1 n=107 Tax=Bacteria RepID=TOP1_BACHD Length = 690 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 3/110 (2%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G++C CG +V + GR+G F+ C N+P+C +T+ I K E + CP+C G +V+R+S+ Sbjct: 576 GEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVK--EIGVKCPKCEKGEIVERKSK 633 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS 170 + F+ C++YPEC F KPIA CP+C L+EK+T + V+ C+S Sbjct: 634 KRRVFYGCNQYPECDFVSWDKPIARSCPKCS-SYLVEKRTKKQVQVQCSS 682 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 15/110 (13%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC--GAN 70 E C KCG E+V + G++G F+ CS +P C +P IVK + G CP C G Sbjct: 577 EMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKP--------IVKEI-GVKCPKCEKGEI 627 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 + + + +F GC YPEC+ DKP A +CP+C + +LV++R++ Sbjct: 628 VERKSKKRRVFYGCNQYPECDFVSW-DKP--IARSCPKC-SSYLVEKRTK 673 >UniRef50_D1BMP2 DNA topoisomerase n=6 Tax=Firmicutes RepID=D1BMP2_VEIPT Length = 791 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 4/120 (3%) Query: 55 IVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHL 114 I + ++C C + +V + GR+G F+ C N+PEC++T+ I T +TCP+C+ G + Sbjct: 637 IASMESDEICELCNSPMVYKFGRYGKFLACSNFPECKNTKPITV--GTGVTCPKCKEGEI 694 Query: 115 VQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQG-VKHFCASKQC 173 V+R+SR G+ F+ C+RYP+C F + KP C C +++EK G VK FC+++ C Sbjct: 695 VERKSRRGRIFYGCNRYPQCDFTLWDKPTHDFCETCG-SIMVEKTYKNGTVKKFCSNETC 753 Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 14/104 (13%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 ++ ++E C C + +V + G++G FL CS +P C +P + V G CP C Sbjct: 639 SMESDEICELCNSPMVYKFGRYGKFLACSNFPECKNTKP---------ITVGTGVTCPKC 689 Query: 68 G-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQC 109 +V R+ R G +F GC YP+C+ T L DKP T C C Sbjct: 690 KEGEIVERKSRRGRIFYGCNRYPQCDFT-LWDKP--THDFCETC 730 >UniRef50_Q59046 DNA topoisomerase 1 n=9 Tax=Methanococcales RepID=TOP1_METJA Length = 761 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 81/158 (51%), Gaps = 34/158 (21%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACD--YVRPLK----------SSADGHIVKV---- 58 CPKCG +L++ K G F+GCS YP CD Y P K + I+K+ Sbjct: 600 CPKCGGDLILIRHKKGRFVGCSNYPECDVKYSLPDKGRIKIPNKVCDACKSPILKIGDRE 659 Query: 59 ---------------LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 E ++CP CGA L+L++G +G F GC NYP+C++TE I+K E Sbjct: 660 ICINPECPLKQVEVKEEDRICPKCGAKLILKKGVYGAFYGCSNYPKCKYTEPINK-KEVV 718 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CP+C G LV R ++GK F C YP+C++ K Sbjct: 719 GKCPKC-GGDLVVREGKFGK-FVGCSNYPKCRYTEKLK 754 >UniRef50_C9RG81 DNA topoisomerase I n=2 Tax=Methanocaldococcus RepID=C9RG81_METVM Length = 928 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 82/154 (53%), Gaps = 34/154 (22%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACD--YVRPLK----------SSADGHIVKV---- 58 CPKCG +L++ K F+GCS YP CD Y P K ++ I+K+ Sbjct: 758 CPKCGGDLILIRHKKSRFVGCSNYPECDVNYSLPDKGRIKIPNKVCNACKSPILKIGDRE 817 Query: 59 ---------------LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 E ++CP CGA L+L++G +G F GC NYP+C++TE I+K ++ Sbjct: 818 ICINPECPLKQVEIKEEDRICPKCGAELILKKGVYGAFYGCSNYPKCKYTEPINKKEKEI 877 Query: 104 I-TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 + CP+C G LV R ++GK F C YP+C++ Sbjct: 878 VGKCPKC-GGDLVVREGKFGK-FIGCSNYPKCKY 909 Score = 97.4 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 6/79 (7%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CPKCGAEL+++ G +G F GCS YP C Y P+ + K CP CG +LV+R Sbjct: 838 CPKCGAELILKKGVYGAFYGCSNYPKCKYTEPINKKEKEIVGK------CPKCGGDLVVR 891 Query: 75 QGRFGMFIGCINYPECEHT 93 +G+FG FIGC NYP+C++T Sbjct: 892 EGKFGKFIGCSNYPKCKYT 910 >UniRef50_C1XK22 DNA topoisomerase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XK22_MEIRU Length = 836 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 10/140 (7%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-ANLVL 73 CPKCG L ++ + G FLGC+ YP C + L+ + + G+ CPACG LV Sbjct: 578 CPKCGRPLELKVSRFGQFLGCTGYPECKHTERLELKKEPEPI----GEACPACGEGQLVR 633 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 R GR+G FI C YPEC++T D+ T I CP+C G +VQ+ S+ GK ++ C+ P Sbjct: 634 RHGRYGSFISCSRYPECKYTR--DEAPSTGIECPKCHAGEVVQKTSKRGKPYYRCNN-PA 690 Query: 134 CQFAINFKPIA-GECPECHY 152 C F ++F P+ +CP C + Sbjct: 691 CDF-LSFDPLLPDKCPLCGW 709 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 5/110 (4%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELID---KPDETAITCPQCRTGHLVQRR 118 ++CP CG L L+ RFG F+GC YPEC+HTE ++ +P+ CP C G LV+R Sbjct: 576 KLCPKCGRPLELKVSRFGQFLGCTGYPECKHTERLELKKEPEPIGEACPACGEGQLVRRH 635 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAG-ECPECHYPLLIEKKTAQGVKHF 167 RYG +F SC RYPEC++ + P G ECP+CH +++K + +G ++ Sbjct: 636 GRYG-SFISCSRYPECKYTRDEAPSTGIECPKCHAGEVVQKTSKRGKPYY 684 >UniRef50_Q7NGH1 DNA topoisomerase n=1 Tax=Gloeobacter violaceus RepID=Q7NGH1_GLOVI Length = 765 Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 14/146 (9%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV---KVLEGQVCPACG-AN 70 C CG L+ R G+ G FLGCS YP CD+ L + D V + EG C CG A Sbjct: 589 CESCGRPLLNRYGRFGNFLGCSGYPECDFTHQL--TRDNKPVPKDRPAEGISCNQCGHAP 646 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 +++ GR+G ++ C P C ++ P T ITCP+C G +V+RRS+ GK F+ CD+ Sbjct: 647 MLITYGRYGEYLKC---PACGKSQ----PKSTGITCPKCSKGQIVERRSKMGKNFYGCDQ 699 Query: 131 YPECQFAINFKPIAG-ECPECHYPLL 155 YP+C F + +PI CPEC LL Sbjct: 700 YPDCDFVLWSRPIDKPACPECGSILL 725 >UniRef50_C9LM02 DNA topoisomerase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM02_9FIRM Length = 799 Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 8/136 (5%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 C KCGA ++++ ++G +L C +P+C ++P + + + ++ C CGA +V R Sbjct: 610 CEKCGAHMIVKMSRYGKYLACPNFPSCKNIKPYHTGEEKEEISDVD---CDKCGAKMVYR 666 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 QG +G ++ C PEC + I +T I CP+C GHLV+RRS+ G+ F+ C RYP C Sbjct: 667 QGPYGRYLKC---PECGQNKAI--VIDTGIECPKCHEGHLVKRRSKRGRYFYGCSRYPAC 721 Query: 135 QFAINFKPIAGECPEC 150 A+ +P+ C C Sbjct: 722 DMAVWDEPVNEFCSVC 737 >UniRef50_D1B572 DNA topoisomerase n=7 Tax=Campylobacterales RepID=D1B572_SULD5 Length = 694 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 10/113 (8%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA---- 103 K+ V V G++CP CG LV R+GRFG FI C YP C++T+ + K E+A Sbjct: 560 KTEIQSQKVIVFTGEMCPECGKELVRRKGRFGEFIACSTYPTCKYTQNLKKVSESAPKEK 619 Query: 104 ----ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHY 152 + CP+C G +++R SR GK F C YP+C+F N++P +CPEC Y Sbjct: 620 VTLSVPCPEC-GGEIIERSSRRGK-FFGCGNYPKCKFISNYEPTDKKCPECGY 670 Score = 92.0 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 6/127 (4%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKS-SADGHIVKVLEG 61 +S V E CP+CG ELV R G+ G F+ CS YP C Y + LK S KV Sbjct: 564 QSQKVIVFTGEMCPECGKELVRRKGRFGEFIACSTYPTCKYTQNLKKVSESAPKEKVTLS 623 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP CG ++ R R G F GC NYP+C + I + T CP+C G+++ +R Sbjct: 624 VPCPECGGEIIERSSRRGKFFGCGNYPKC---KFISNYEPTDKKCPEC--GYIMAKRELR 678 Query: 122 GKTFHSC 128 K + C Sbjct: 679 KKEIYEC 685 >UniRef50_Q4L5V2 DNA topoisomerase 1 n=155 Tax=Firmicutes RepID=TOP1_STAHJ Length = 689 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 70/111 (63%), Gaps = 5/111 (4%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G+ C CG+ +V++ GR+G F+ C N+P+C +T+ I K +TCP+C+ G +V+R+S+ Sbjct: 574 GEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVK--TIGVTCPKCKDGDVVERKSK 631 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPEC-HYPLLIEKKTAQGVKHFCAS 170 + F+ C YPEC F KP+ +CP+C HY L+E K + + C++ Sbjct: 632 KNRLFYGCSNYPECDFISWDKPVGRDCPKCNHY--LMEHKKGRSSQVICSN 680 Score = 69.7 bits (169), Expect = 5e-11, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 15/126 (11%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC-GANL 71 E C CG+ +VI+ G++G F+ CS +P C R K+ IVK + G CP C ++ Sbjct: 575 EDCEVCGSPMVIKMGRYGKFMACSNFPDC---RNTKA-----IVKTI-GVTCPKCKDGDV 625 Query: 72 VLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS-CD 129 V R+ + +F GC NYPEC+ DKP CP+C + ++ R + S CD Sbjct: 626 VERKSKKNRLFYGCSNYPECDFISW-DKP--VGRDCPKCNHYLMEHKKGRSSQVICSNCD 682 Query: 130 RYPECQ 135 E Q Sbjct: 683 YKEEVQ 688 >UniRef50_Q1PYZ6 DNA topoisomerase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYZ6_9BACT Length = 773 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 10/140 (7%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-LEGQVCPACGA 69 ++++C KCG+ ++I++ +HG F+ CS YP C + L G KV + C CG+ Sbjct: 631 SDQACEKCGSPMIIKTSRHGKFMACSAYPNCKNTKSLT----GETTKVEPTNEKCEKCGS 686 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT-GHLVQRRSRYGKTFHSC 128 +V+R + G F+GC YP+C + K T I CP+ G L+QR S+ G F C Sbjct: 687 PMVIRFSKKGRFMGCSGYPKCRNI----KSLPTGIKCPRDECGGDLIQRYSKKGGIFFGC 742 Query: 129 DRYPECQFAINFKPIAGECP 148 +YP+C + PIAGE P Sbjct: 743 SKYPDCDYISKELPIAGEEP 762 Score = 62.0 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 21/111 (18%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK------PDETAITCPQCRTGHLV 115 ++C C +V+R GR G F GC +PEC++T +D+ P+ + C +C + ++ Sbjct: 585 RICNLCSKPMVIRWGRHGKFFGCSAFPECKNTMPLDEKGEAAPPETSDQACEKCGSPMII 644 Query: 116 QRRSRYGKTFHSCDRYPECQFAINFKPIAGE----------CPECHYPLLI 156 + SR+GK F +C YP C+ N K + GE C +C P++I Sbjct: 645 -KTSRHGK-FMACSAYPNCK---NTKSLTGETTKVEPTNEKCEKCGSPMVI 690 >UniRef50_A9FRC6 DNA topoisomerase I n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FRC6_SORC5 Length = 864 Score = 99.8 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 14/166 (8%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV-CPACGANLVL 73 C +CG+ ++ + GK+G FL C +YP C R L S A G V E + C CG +++ Sbjct: 630 CDECGSMMLKKWGKNGWFLSCERYPKCKATRDL-SDARG-TAAVRETDISCDKCGKPMII 687 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY--GKTFHSCDRY 131 + GRFG F+ C YP C++T +P + CP C G L++ R R G+TF+ C + Sbjct: 688 KTGRFGDFLSCTGYPACKNT----RPVPLGVACPSC-GGDLIEIRPRKKGGRTFYGCSNW 742 Query: 132 ---PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 +C+F + KP+ CP+C + + + CA+K CG Sbjct: 743 NAEQKCEFKLWQKPVPVPCPQCGAK-FVTRTAGKKAMLVCATKDCG 787 Score = 65.5 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 20/102 (19%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV- 72 SC KCG ++I++G+ G FL C+ YPAC RP V G CP+CG +L+ Sbjct: 677 SCDKCGKPMIIKTGRFGDFLSCTGYPACKNTRP-----------VPLGVACPSCGGDLIE 725 Query: 73 LRQGRFG--MFIGCINY---PECEHTELIDKPDETAITCPQC 109 +R + G F GC N+ +CE +L KP + CPQC Sbjct: 726 IRPRKKGGRTFYGCSNWNAEQKCEF-KLWQKP--VPVPCPQC 764 >UniRef50_Q2FZ32 DNA topoisomerase 1 n=260 Tax=Bacteria RepID=TOP1_STAA8 Length = 689 Score = 99.8 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 3/110 (2%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G+ C CG+ +V++ GR+G F+ C N+P+C +T+ I K + CP+C G +V+R+S+ Sbjct: 574 GEDCEICGSPMVIKMGRYGKFMACSNFPDCRNTKAIVK--SIGVKCPKCNDGDVVERKSK 631 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS 170 + F+ C +YPEC F KPI +CP+C+ L+E K + + C++ Sbjct: 632 KNRVFYGCSKYPECDFISWDKPIGRDCPKCN-QYLVENKKGKTTQVICSN 680 Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 17/114 (14%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-ANL 71 E C CG+ +VI+ G++G F+ CS +P C R K+ IVK + G CP C ++ Sbjct: 575 EDCEICGSPMVIKMGRYGKFMACSNFPDC---RNTKA-----IVKSI-GVKCPKCNDGDV 625 Query: 72 VLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 V R+ + +F GC YPEC+ DKP CP+C +LV+ + GKT Sbjct: 626 VERKSKKNRVFYGCSKYPECDFISW-DKP--IGRDCPKCNQ-YLVENKK--GKT 673 >UniRef50_Q256J1 DNA topoisomerase I-fused to SWI domain n=18 Tax=Chlamydiales RepID=Q256J1_CHLFF Length = 862 Score = 99.8 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 12/131 (9%) Query: 15 CPKC-GAELVIRSGKHGPFLGCSQYPACDYV---RPLKSSADGHIVKVLEGQVCPACGAN 70 C C +LV K+ F GCS+YP CD+ L + D + V+ CP CG Sbjct: 595 CSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVETPWDSPCPVCGGE 654 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETA-----ITCPQ--CRTGHLVQRRSRYGK 123 + +R GRFG F+GC+NYP+C T + K E I CP C +G + ++RSRY K Sbjct: 655 MKVRHGRFGTFLGCLNYPKCRGTISLHKKGEEVETEEPIPCPAIGC-SGKIFKKRSRYNK 713 Query: 124 TFHSCDRYPEC 134 TF+SC YP+C Sbjct: 714 TFYSCSEYPDC 724 >UniRef50_D1Y390 DNA topoisomerase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y390_9BACT Length = 767 Score = 98.6 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 5/95 (5%) Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC---RTGHLV 115 L G+ CP CG LV +QGRFG FIGC +PEC + + + K E + CP+C G +V Sbjct: 651 LTGETCPQCGRPLVKKQGRFGDFIGCSGFPECHYIKPVQK--EIGVPCPKCGNEHGGQVV 708 Query: 116 QRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 QR+S+ G+TF+ C RYP+C + KP +CP C Sbjct: 709 QRKSKKGRTFYGCSRYPDCDYVSWNKPAPEKCPLC 743 Score = 69.3 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 17/102 (16%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC----G 68 E+CP+CG LV + G+ G F+GCS +P C Y++P++ G CP C G Sbjct: 654 ETCPQCGRPLVKKQGRFGDFIGCSGFPECHYIKPVQKEI---------GVPCPKCGNEHG 704 Query: 69 ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQC 109 +V R+ + G F GC YP+C++ +KP CP C Sbjct: 705 GQVVQRKSKKGRTFYGCSRYPDCDYVSW-NKPAPE--KCPLC 743 >UniRef50_C9LSJ2 DNA topoisomerase n=3 Tax=Veillonellaceae RepID=C9LSJ2_9FIRM Length = 836 Score = 97.4 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 70/111 (63%), Gaps = 3/111 (2%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 +C CG N+V++QGR+G F+ C +P+C +T+ + K +T + CP+C G +V+RRSR G Sbjct: 689 ICEKCGRNMVVKQGRYGKFLACPGFPDCRNTKPLLK--DTGVPCPKC-GGRIVERRSRRG 745 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 + F+ C+ YP C + +P+ +CPEC +L + + +C++++C Sbjct: 746 QAFYGCENYPACDYVTWDQPLTEKCPECGAFMLRHRYKNGRILPYCSNEEC 796 Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 64/133 (48%), Gaps = 16/133 (12%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 C KCG +V++ G++G FL C +P C +PL G CP CG +V R Sbjct: 690 CEKCGRNMVVKQGRYGKFLACPGFPDCRNTKPLLKDT---------GVPCPKCGGRIVER 740 Query: 75 QGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 + R G F GC NYP C++ D+P CP+C +++ R + G+ C E Sbjct: 741 RSRRGQAFYGCENYPACDYVTW-DQP--LTEKCPEC-GAFMLRHRYKNGRILPYCSN-EE 795 Query: 134 CQFAINFKPIAGE 146 C+ I+ PI E Sbjct: 796 CKTRID-HPINKE 807 >UniRef50_UPI00006DC642 hypothetical protein CdifQ_04001409 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DC642 Length = 363 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 ++C CG+N+V++ GRFG F+ C NYP+C+ T I ++ + CP+C G ++ R+S+ Sbjct: 243 EICENCGSNMVIKYGRFGKFMACKNYPDCKTTRPI--MNKIGVKCPKCEEGDIILRKSKR 300 Query: 122 GKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 GK F+ C YP C F KP C +C ++EK T K C++K+C K Sbjct: 301 GKAFYGCSNYPNCDFVAWNKPTGEFCEKCG-SYMVEKVTKSETKTVCSNKECNK 353 Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 15/111 (13%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC-GAN 70 +E C CG+ +VI+ G+ G F+ C YP C RP+ + G CP C + Sbjct: 242 DEICENCGSNMVIKYGRFGKFMACKNYPDCKTTRPIMNKI---------GVKCPKCEEGD 292 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++LR+ + G F GC NYP C+ +KP T C +C + ++V++ ++ Sbjct: 293 IILRKSKRGKAFYGCSNYPNCDFVAW-NKP--TGEFCEKCGS-YMVEKVTK 339 >UniRef50_B9L0B0 DNA topoisomerase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0B0_THERP Length = 744 Score = 94.4 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 4/103 (3%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTE-LIDKPDETAITCPQCRTGHLVQRRS 119 G+VC CG +V+++ RFG F+ C +PEC++ L++K + CPQC G +V RRS Sbjct: 624 GEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLLEK---IGVRCPQCGEGEIVVRRS 680 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 R G+TF+ C RYP+C F +P CP+C L++ + Q Sbjct: 681 RKGRTFYGCSRYPDCDFVSWERPTGERCPQCGGVLVVSVRRGQ 723 Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 57/125 (45%), Gaps = 15/125 (12%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-A 69 + E C CG +VI+ + G FL CS +P C RPL G CP CG Sbjct: 623 SGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLLEKI---------GVRCPQCGEG 673 Query: 70 NLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ-RRSRYGKTFHS 127 +V+R+ R G F GC YP+C+ ++P T CPQC +V RR + S Sbjct: 674 EIVVRRSRKGRTFYGCSRYPDCDFVSW-ERP--TGERCPQCGGVLVVSVRRGQESVRCSS 730 Query: 128 CDRYP 132 C P Sbjct: 731 CSYRP 735 >UniRef50_B2KBN6 DNA topoisomerase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN6_ELUMP Length = 765 Score = 93.2 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 51/141 (36%), Positives = 76/141 (53%), Gaps = 12/141 (8%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 ++E CP CG+ +VIR + G +L CS YP C L SS + +V E + C CG+ Sbjct: 613 SDEKCPLCGSPMVIRRSRFGEYLACSTYPECKGKINLTSSGEKLAPEVTE-EKCEKCGSP 671 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDK---------PDETAITCPQCRTGHLVQRRSRY 121 +V+R GR G F+ C +P+C++T ID P ET I C +C L+ R S+ Sbjct: 672 MVIRSGRRGKFMACSAFPKCKNTFSIDASGNKVASSGPIETKIKCEKCGKPMLL-RASKR 730 Query: 122 GKTFHSCDRYPECQFAINFKP 142 G+ F C YP+C+ ++ P Sbjct: 731 GE-FLGCSGYPKCKTIVSVSP 750 Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 11/97 (11%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-----LEGQV-CPA 66 E C KCG+ +VIRSG+ G F+ CS +P C + +S + KV +E ++ C Sbjct: 663 EKCEKCGSPMVIRSGRRGKFMACSAFPKCKNTFSIDASGN----KVASSGPIETKIKCEK 718 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 CG ++LR + G F+GC YP+C+ T + P+E A Sbjct: 719 CGKPMLLRASKRGEFLGCSGYPKCK-TIVSVSPEEIA 754 >UniRef50_C1SMY2 DNA topoisomerase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY2_9BACT Length = 782 Score = 93.2 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 21/140 (15%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE-----GQVCPACGA 69 C KCG ELV + + G L C YP C ++ + DG I K+L G CP C A Sbjct: 632 CEKCGKELVFKKTRFGEVLACPGYPECKNIKNYVTLPDGEI-KILAAGEEIGTPCPKCEA 690 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELI------------DKPDETAITCPQCRTGHLVQR 117 L ++ GR GMFIGC NYP+C+ T + DK DE + C +C +V + Sbjct: 691 GLTIKGGRNGMFIGCKNYPDCDFTANMEVNEQGDIIPKYDKVDEN-VKCEKCGKP-MVLK 748 Query: 118 RSRYGKTFHSCDRYPECQFA 137 +SR GK F +C YPEC+ A Sbjct: 749 KSRRGK-FFACTGYPECKNA 767 Score = 82.4 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 19/144 (13%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE------GQVCPACG 68 CP C +L I+ G++G F+ C+ YP C + + DG V + G C CG Sbjct: 577 CPVCEKDLTIKYGRNGNFVACTSYPECKFTSNYERLEDGSFKLVPKEEDKPSGIECEKCG 636 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTE-LIDKPD----------ETAITCPQCRTGHLVQR 117 LV ++ RFG + C YPEC++ + + PD E CP+C G L + Sbjct: 637 KELVFKKTRFGEVLACPGYPECKNIKNYVTLPDGEIKILAAGEEIGTPCPKCEAG-LTIK 695 Query: 118 RSRYGKTFHSCDRYPECQFAINFK 141 R G F C YP+C F N + Sbjct: 696 GGRNG-MFIGCKNYPDCDFTANME 718 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 4/84 (4%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV----KVLEGQVCPACGAN 70 CPKC A L I+ G++G F+GC YP CD+ ++ + G I+ KV E C CG Sbjct: 685 CPKCEAGLTIKGGRNGMFIGCKNYPDCDFTANMEVNEQGDIIPKYDKVDENVKCEKCGKP 744 Query: 71 LVLRQGRFGMFIGCINYPECEHTE 94 +VL++ R G F C YPEC++ + Sbjct: 745 MVLKKSRRGKFFACTGYPECKNAK 768 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 29/121 (23%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHT-----------ELIDKPDE--TAITCPQCR 110 CP C +L ++ GR G F+ C +YPEC+ T +L+ K ++ + I C +C Sbjct: 577 CPVCEKDLTIKYGRNGNFVACTSYPECKFTSNYERLEDGSFKLVPKEEDKPSGIECEKCG 636 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI---------AGE-----CPECHYPLLI 156 LV +++R+G+ +C YPEC+ N+ + AGE CP+C L I Sbjct: 637 K-ELVFKKTRFGEVL-ACPGYPECKNIKNYVTLPDGEIKILAAGEEIGTPCPKCEAGLTI 694 Query: 157 E 157 + Sbjct: 695 K 695 >UniRef50_D1C7I9 DNA topoisomerase n=8 Tax=Bacteria RepID=D1C7I9_SPHTD Length = 769 Score = 92.4 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 56/90 (62%), Gaps = 4/90 (4%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTE-LIDKPDETAITCPQCRTGHLVQRRSR 120 +VC CG +V++ GR+G F+ C +PEC + L+ K +TCPQC G +VQRR++ Sbjct: 653 EVCEKCGRPMVIKLGRYGRFLACSGFPECRNARPLLQK---IGVTCPQCGEGDIVQRRTK 709 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPEC 150 G+ F+ C RYP+C F+ KP CP+C Sbjct: 710 KGRVFYGCSRYPDCNFSSWEKPTGEPCPQC 739 Score = 71.2 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 15/109 (13%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 +E C KCG +VI+ G++G FL CS +P C RPL G CP CG + Sbjct: 652 DEVCEKCGRPMVIKLGRYGRFLACSGFPECRNARPLLQKI---------GVTCPQCGEGD 702 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 +V R+ + G +F GC YP+C + +KP T CPQC G LV+ R Sbjct: 703 IVQRRTKKGRVFYGCSRYPDCNFSSW-EKP--TGEPCPQC-GGVLVETR 747 >UniRef50_C1XZ86 Zn-finger domain-containing protein (Topoisomerase type I-like) (Fragment) n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ86_9DEIN Length = 301 Score = 92.4 bits (228), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 5/116 (4%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELID---KPDETAITCPQCRTG 112 V L + CP CG + ++ RFG F+GC YPEC HTE ++ + CP+C G Sbjct: 7 VSRLPRRTCPVCGRPMEVKVSRFGQFLGCTGYPECRHTERLEAKRAAEPIGEPCPKCHQG 66 Query: 113 HLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG-ECPECHYPLLIEKKTAQGVKHF 167 LV+R RYG +F SC RYPEC ++ + P G ECP+CH +++K + +G ++ Sbjct: 67 ELVRRHGRYG-SFISCSRYPECDYSRDEAPSTGIECPKCHAGEIVQKISKRGKPYY 121 Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 10/140 (7%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC-GANLV 72 +CP CG + ++ + G FLGC+ YP C + L++ + G+ CP C LV Sbjct: 14 TCPVCGRPMEVKVSRFGQFLGCTGYPECRHTERLEAKRAAEPI----GEPCPKCHQGELV 69 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP 132 R GR+G FI C YPEC+++ D+ T I CP+C G +VQ+ S+ GK ++ C+ Sbjct: 70 RRHGRYGSFISCSRYPECDYSR--DEAPSTGIECPKCHAGEIVQKISKRGKPYYRCN--- 124 Query: 133 ECQFAINFKPIAGECPECHY 152 C F + + C C + Sbjct: 125 NCDFLSFDRVLESRCSICGW 144 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 10/64 (15%) Query: 13 ESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 E CPKC ELV R G++G F+ CS+YP CDY R S G CP C A Sbjct: 58 EPCPKCHQGELVRRHGRYGSFISCSRYPECDYSRDEAPST---------GIECPKCHAGE 108 Query: 72 VLRQ 75 ++++ Sbjct: 109 IVQK 112 >UniRef50_C9RBU3 DNA topoisomerase n=2 Tax=Bacteria RepID=C9RBU3_AMMDK Length = 686 Score = 89.0 bits (219), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 6/111 (5%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 CP CG +V + GR+G F+ C YPEC+ + P T + CP+C G LV+RRS+ G+ Sbjct: 576 CPRCGCPMVKKTGRYGEFLACSGYPECQ----MRMPVGTGVKCPRC-GGELVKRRSKKGR 630 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 F+ C+RYPEC F + +P+ CPEC L++ + + + C ++ CG Sbjct: 631 YFYGCNRYPECNFVVWSEPVPEPCPECG-SLMVRRGRGKKKRVICTNESCG 680 Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 23/124 (18%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + K +L + SCP+CG +V ++G++G FL CS YP C P+ + Sbjct: 562 IEKVSLPDTFTDISCPRCGCPMVKKTGRYGEFLACSGYPECQMRMPVGT----------- 610 Query: 61 GQVCPACGANLVLRQGRFG-MFIGCINYPECE---HTELIDKPDETAITCPQCRTGHLVQ 116 G CP CG LV R+ + G F GC YPEC +E + +P CP+C G L+ Sbjct: 611 GVKCPRCGGELVKRRSKKGRYFYGCNRYPECNFVVWSEPVPEP------CPEC--GSLMV 662 Query: 117 RRSR 120 RR R Sbjct: 663 RRGR 666 >UniRef50_A8SJ74 DNA topoisomerase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ74_9FIRM Length = 703 Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 5/111 (4%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 CP CG NLV+++ +FG FIGC +P+C + + + +T + CP+C G ++++ S+ K Sbjct: 584 CPQCGKNLVIKKTKFGRFIGCSGFPDCNYIK--KEVKDTGVKCPKC-GGRIIEKISKKRK 640 Query: 124 TFHSCDRYPECQFAINFKPIAG-ECPECHYPLLIEKKTAQGVKHFCASKQC 173 F+ C+ YPEC +AI KPIA +C +C L+E K C+ + C Sbjct: 641 VFYGCENYPECDYAIWDKPIADKKCEKCG-KFLVEVKNRFKHALKCSDENC 690 Score = 79.7 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 15/136 (11%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +E CP+CG LVI+ K G F+GCS +P C+Y++ K D G CP CG + Sbjct: 581 DEKCPQCGKNLVIKKTKFGRFIGCSGFPDCNYIK--KEVKD-------TGVKCPKCGGRI 631 Query: 72 VLR-QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 + + + +F GC NYPEC++ + DKP C +C LV+ ++R+ D Sbjct: 632 IEKISKKRKVFYGCENYPECDYA-IWDKPIADK-KCEKCGK-FLVEVKNRFKHALKCSDE 688 Query: 131 YPECQFAINFKPIAGE 146 C F I+ K E Sbjct: 689 --NCDFEIDLKKKKNE 702 >UniRef50_D1B6D6 DNA topoisomerase I n=3 Tax=Synergistaceae RepID=D1B6D6_THEAS Length = 708 Score = 87.0 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 40/88 (45%), Positives = 54/88 (61%), Gaps = 6/88 (6%) Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 L G+ CP CG L++R+GR+G FIGC YPEC+ T+ K T + CP+C G +V R+ Sbjct: 610 LAGEDCPQCGRPLLIRRGRYGEFIGCSGYPECDFTK--RKETSTGVPCPKCGQGTVVARK 667 Query: 119 SRYGK----TFHSCDRYPECQFAINFKP 142 + GK TF+ C RYPEC + KP Sbjct: 668 ASKGKGKGRTFYGCSRYPECDYVSWSKP 695 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 15/86 (17%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 E CP+CG L+IR G++G F+GCS YP CD+ + ++S G CP CG V Sbjct: 613 EDCPQCGRPLLIRRGRYGEFIGCSGYPECDFTKRKETST---------GVPCPKCGQGTV 663 Query: 73 LR------QGRFGMFIGCINYPECEH 92 + +G+ F GC YPEC++ Sbjct: 664 VARKASKGKGKGRTFYGCSRYPECDY 689 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 10/62 (16%) Query: 7 FTVRNNES----CPKCGAELVIR------SGKHGPFLGCSQYPACDYVRPLKSSADGHIV 56 FT R S CPKCG V+ GK F GCS+YP CDYV K DG + Sbjct: 643 FTKRKETSTGVPCPKCGQGTVVARKASKGKGKGRTFYGCSRYPECDYVSWSKPKGDGTVS 702 Query: 57 KV 58 +V Sbjct: 703 EV 704 >UniRef50_B3EPW7 DNA topoisomerase n=12 Tax=Chlorobiaceae RepID=B3EPW7_CHLPB Length = 804 Score = 86.7 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 17/135 (12%) Query: 13 ESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC-GAN 70 E+C KCG +++I+ G FLGCS YPAC ++PL SS + G C C Sbjct: 598 ETCDKCGKGKMIIKWTASGKFLGCSSYPACKNIKPLASS---RVRPKETGIKCHGCENGR 654 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDK----------PDETAITCPQCRTGHLVQRRSR 120 +VLR GRFG F+ C YP+C +DK P ET + CP+C G + R+ Sbjct: 655 MVLRNGRFGPFLACTGYPDCNTLLKLDKQRKIEPPKTPPLETDLACPKC--GAPLYLRTG 712 Query: 121 YGKTFHSCDRYPECQ 135 + C ++P+C+ Sbjct: 713 KRGLWLGCSKFPKCR 727 Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 7/89 (7%) Query: 9 VRNNESCPKC-GAE---LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV--LEGQ 62 VR E+ KC G E +V+R+G+ GPFL C+ YP C+ + L K LE Sbjct: 638 VRPKETGIKCHGCENGRMVLRNGRFGPFLACTGYPDCNTLLKLDKQRKIEPPKTPPLETD 697 Query: 63 V-CPACGANLVLRQGRFGMFIGCINYPEC 90 + CP CGA L LR G+ G+++GC +P+C Sbjct: 698 LACPKCGAPLYLRTGKRGLWLGCSKFPKC 726 >UniRef50_B5YFC7 DNA topoisomerase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YFC7_DICT6 Length = 694 Score = 85.9 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 14/102 (13%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + +E CP CG ELVIR KHG + CS YP C Y +P+ A G CP CG Sbjct: 571 KTDEFCPICGRELVIRENKHGKYYACSAYPECKYTKPIYEEAHGK---------CPLCGG 621 Query: 70 NLVLRQGRF--GMFIGCINYPECEHTELIDKPDETAITCPQC 109 +V ++ R +F GCINYP C + DE CPQC Sbjct: 622 IVVKKKARKTGKVFWGCINYPNCSFASPYEPLDE---KCPQC 660 Score = 78.6 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 9/113 (7%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR- 120 + CP CG LV+R+ + G + C YPEC++T+ I +E CP C G +V++++R Sbjct: 574 EFCPICGRELVIRENKHGKYYACSAYPECKYTKPI--YEEAHGKCPLC-GGIVVKKKARK 630 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 GK F C YP C FA ++P+ +CP+C LL G K C+++ C Sbjct: 631 TGKVFWGCINYPNCSFASPYEPLDEKCPQCGSVLL----KGNGFKK-CSNENC 678 >UniRef50_C0QYG0 DNA topoisomerase n=2 Tax=Brachyspira RepID=C0QYG0_BRAHW Length = 716 Score = 84.7 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 8/113 (7%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 VC CG ++ R GR+G FI C +PEC++T+ I + CP+C G + +RS+ G Sbjct: 601 VCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGI-----SFGVCPKC-GGDITLKRSKRG 654 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCG 174 + F+ C YP+C F KP+ CP+C L++EK +G+ C + CG Sbjct: 655 REFYGCSNYPKCDFVSWDKPLQEPCPKCG-GLMVEKNIKNKGLFKVCIKEDCG 706 Score = 68.6 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 F + C KCG +++ R G++G F+ CS +P C + + VCP Sbjct: 593 FFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGISFG------------VCP 640 Query: 66 ACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 CG ++ L++ + G F GC NYP+C+ DKP + CP+C G +V++ + Sbjct: 641 KCGGDITLKRSKRGREFYGCSNYPKCDFVSW-DKPLQEP--CPKC-GGLMVEKNIKNKGL 696 Query: 125 FHSC 128 F C Sbjct: 697 FKVC 700 >UniRef50_B0MRI8 DNA topoisomerase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRI8_9FIRM Length = 713 Score = 84.7 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 5/112 (4%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 VC CG +V++ G +G F+GC +PEC++T+ I +ET CP C G ++ ++S+ G Sbjct: 594 VCDKCGKPMVIKIGPYGKFLGCSGFPECKNTKRI--VNETGGLCPHC-GGKMLAKKSKKG 650 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 K F C+ Y +C F P+ +CP+C L KK + + +CA CG Sbjct: 651 KPFFGCENYKDCNFMTWDTPLEDKCPKCGSTLF--KKVGKQGQVYCAKDGCG 700 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 14/116 (12%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 C KCG +VI+ G +G FLGCS +P C + + + G +CP CG ++ + Sbjct: 595 CDKCGKPMVIKIGPYGKFLGCSGFPECKNTKRIVNETGG---------LCPHCGGKMLAK 645 Query: 75 QGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 + + G F GC NY +C D P E CP+C + L ++ + G+ + + D Sbjct: 646 KSKKGKPFFGCENYKDCNFMTW-DTPLED--KCPKCGST-LFKKVGKQGQVYCAKD 697 >UniRef50_A5D2W4 DNA topoisomerase n=4 Tax=Clostridiales RepID=A5D2W4_PELTS Length = 714 Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 67/113 (59%), Gaps = 7/113 (6%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 C CG ++V++ GR+G F+ C +PEC T+ + +P CP+C G LV RR++ G+ Sbjct: 583 CDRCGRSMVVKVGRYGKFLACPGFPECRSTKPLLEP--VGAKCPRCE-GELVVRRTKKGR 639 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHF--CASKQCG 174 F C +PEC+F +P +CPEC L++EKK A G K F C S+ CG Sbjct: 640 KFLGCSNFPECEFVTWDQPSGTKCPECG-GLMVEKKNA-GKKGFLQCVSEDCG 690 Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 14/119 (11%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 E C +CG +V++ G++G FL C +P C +PL G CP C Sbjct: 579 TEEKCDRCGRSMVVKVGRYGKFLACPGFPECRSTKPLLEPV---------GAKCPRCEGE 629 Query: 71 LVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 LV+R+ + G F+GC N+PECE D+P T CP+C G +V++++ K F C Sbjct: 630 LVVRRTKKGRKFLGCSNFPECEFVTW-DQPSGTK--CPEC-GGLMVEKKNAGKKGFLQC 684 >UniRef50_A9BI47 DNA topoisomerase n=3 Tax=Thermotogaceae RepID=A9BI47_PETMO Length = 762 Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 32/180 (17%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG-------HI 55 K + ++ C KCG + + G++G +L C + C + + + + G +I Sbjct: 573 KKEILHYESDVPCEKCGKNMKLNFGRYGLYLSCEE---CKETQKIPAESFGVTIKEKLYI 629 Query: 56 VKVLE------------GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 + L+ + CP CG +L+L+ G+FG FI C NYPEC++T + + Sbjct: 630 KEYLQETLKIDKEENKIDEKCPICGGDLILKHGKFGEFIACSNYPECKYTRNVKARGK-- 687 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQG 163 CP C G +V+ +S+ GKT+ C+ C +P CP C L KT++G Sbjct: 688 --CPNC-GGDIVKLKSKKGKTYFKCN---SCSTMYWNEPSEYSCPNCGETLFY--KTSKG 739 >UniRef50_C4L6T7 UvrD/REP helicase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6T7_EXISA Length = 964 Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 10/89 (11%) Query: 8 TVRNNESCPKC-GAELVIR--SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 ++R+N CP+C LVIR + + F+GCS YP CDY H + + VC Sbjct: 866 SIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTA-------NHPSIIHDPIVC 918 Query: 65 PACGANLVLRQGRFGMFIGCINYPECEHT 93 P+C LVLR G+ G F GC+N+P C+HT Sbjct: 919 PSCRGYLVLRDGKNGKFYGCLNFPLCKHT 947 Score = 41.2 bits (95), Expect = 0.017, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 9/64 (14%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGK-TFHSCDRYPECQFAINFKPIAGE--- 146 E + D P CP+C GHLV R K TF C YP C + N I + Sbjct: 863 ERKSIRDNP-----KCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTANHPSIIHDPIV 917 Query: 147 CPEC 150 CP C Sbjct: 918 CPSC 921 >UniRef50_Q18KP8 DNA topoisomerase n=6 Tax=Halobacteriaceae RepID=Q18KP8_HALWD Length = 857 Score = 78.6 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 13/137 (9%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV- 72 CP+C +L+ R + G F+GC YP C+Y PL S+ HI++ VC + Sbjct: 616 CPQCEGDLITRKSQAGSHFIGCDSYPDCEYTLPLPSTGKPHILET----VCDVHNLQQIK 671 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQRRSRYGKTFHSCD 129 + G+ GC P CE ++ D TCP+C G L +R R G C Sbjct: 672 MLAGKRSFVHGC---PLCEAEAADEQADRVIGTCPECNAHADGELAIKRLRSGSRLVGCT 728 Query: 130 RYPECQFAINFKPIAGE 146 RYP+C++++ P GE Sbjct: 729 RYPDCEYSLPL-PRQGE 744 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 +H + K D+T CPQC G L+ R+S+ G F CD YP+C++ + Sbjct: 601 DHLQRSMKADKTIGPCPQCE-GDLITRKSQAGSHFIGCDSYPDCEYTL 647 >UniRef50_B9LRP1 DNA topoisomerase n=4 Tax=Halobacteriaceae RepID=B9LRP1_HALLT Length = 864 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 13/137 (9%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV- 72 CP+CG++L++R + G F+GC YP C+Y PL SS +L + C V Sbjct: 637 CPECGSDLLVRKSRQGSYFVGCDGYPDCEYTLPLPSSGK----PLLLDETCEEHELRHVK 692 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC---RTGHLVQRRSRYGKTFHSCD 129 + GR GC P+C+ E ++ DE CP+C G L +R R G C Sbjct: 693 MLAGRKTFVHGC---PQCKADEADEQEDEVIGACPECGEEHGGELAIKRLRSGSRLVGCT 749 Query: 130 RYPECQFAINFKPIAGE 146 RYP+C +++ P GE Sbjct: 750 RYPDCDYSLPL-PRRGE 765 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 +H + K D+T CP+C + LV R+SR G F CD YP+C++ + P+ P Sbjct: 622 DHLQKSLKADKTLGPCPECGSDLLV-RKSRQGSYFVGCDGYPDCEYTL---PL----PSS 673 Query: 151 HYPLLIEK 158 PLL+++ Sbjct: 674 GKPLLLDE 681 >UniRef50_B8E2F6 DNA topoisomerase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2F6_DICTD Length = 696 Score = 77.0 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 59/131 (45%), Gaps = 21/131 (16%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + +E CP CG++LVIR K+G + CS+YP C Y +P+ A G CP CG Sbjct: 573 KTDEICPLCGSKLVIRENKNGKYYACSRYPECKYTKPIYEEAQGR---------CPLCGG 623 Query: 70 --NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 + F GCINYPEC + +E CPQC + L G F Sbjct: 624 VVVKKKAKKTKKTFWGCINYPECSFASPYEPLNE---KCPQCGSTML------KGNGFKK 674 Query: 128 CDRYPECQFAI 138 C +C + + Sbjct: 675 CSN-KDCNYIV 684 Score = 75.5 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 9/120 (7%) Query: 56 VKVLE--GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGH 113 ++V+E ++CP CG+ LV+R+ + G + C YPEC++T+ I +E CP C Sbjct: 568 IQVIEKTDEICPLCGSKLVIRENKNGKYYACSRYPECKYTKPI--YEEAQGRCPLCGGVV 625 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 + ++ + KTF C YPEC FA ++P+ +CP+C +L G K C++K C Sbjct: 626 VKKKAKKTKKTFWGCINYPECSFASPYEPLNEKCPQCGSTML----KGNGFKK-CSNKDC 680 >UniRef50_C0W9S2 DNA topoisomerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S2_9FIRM Length = 754 Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 9/113 (7%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP--DETAITCPQCRTGH-LVQRRSR 120 C CG +V++ GR G F+ C +PEC +T KP ++ + CP C GH L+ R+++ Sbjct: 579 CEKCGRMMVVKTGRHGKFLACPGFPECRNT----KPYYEKIGVACPLC--GHDLIVRKTK 632 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 G+TF+ C YPEC F KPI CP C + +L + V H C++ +C Sbjct: 633 TGRTFYGCSHYPECHFTSWDKPINETCPLCGHIMLEAVQRGGKVVHHCSNPEC 685 Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 17/128 (13%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + ++ C KCG +V+++G+HG FL C +P C +P G CP CG Sbjct: 573 IVSDVKCEKCGRMMVVKTGRHGKFLACPGFPECRNTKPYYEKI---------GVACPLCG 623 Query: 69 ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGH-LVQRRSRYGKTFH 126 +L++R+ + G F GC +YPEC T DKP TCP C GH +++ R GK H Sbjct: 624 HDLIVRKTKTGRTFYGCSHYPECHFTSW-DKPINE--TCPLC--GHIMLEAVQRGGKVVH 678 Query: 127 SCDRYPEC 134 C PEC Sbjct: 679 HCSN-PEC 685 >UniRef50_Q9JN65 DNA topoisomerase 1 n=2 Tax=Mycoplasma gallisepticum RepID=TOP1_MYCGA Length = 719 Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 9/97 (9%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 ++CP C ++LV R G++GPF+GCS +P C ++ KS + EG C C A L+ Sbjct: 618 KNCPNCSSQLVRREGRYGPFVGCSNFPKCKFIE--KSEQKAKEIVYEEGVKCELCHAKLI 675 Query: 73 LR----QGRF--GMFIGCINYPECEHTELID-KPDET 102 R +GR F+GC N+P+C++T+ ++ + DET Sbjct: 676 RRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDET 712 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD-----ETAITCPQCR 110 V+ +EG+ CP C + LV R+GR+G F+GC N+P+C+ E ++ E + C C Sbjct: 612 VEYIEGKNCPNCSSQLVRREGRYGPFVGCSNFPKCKFIEKSEQKAKEIVYEEGVKCELCH 671 Query: 111 TGHLVQRRSRYGK----TFHSCDRYPECQFAINFKP 142 + + + G+ TF C +P+C++ + +P Sbjct: 672 AKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEP 707 >UniRef50_B1GYR4 DNA topoisomerase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR4_UNCTG Length = 740 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 16/147 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + K + + +E CP CG +VIR + FLGCS YP C L DG I Sbjct: 569 LQKQKVQAQQTSEICPNCGKNMVIRYSRKVQFLGCSGYPECKTT--LSLDKDGKIAAAPR 626 Query: 61 --GQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDK---------PDETAITCPQ 108 C CG++L+ + G G ++ C NYPEC+ I+K P+ T I C + Sbjct: 627 ETDMKCDKCGSHLIKKTGFAGKQYLSCKNYPECKTLYNINKDGNKIIYPEPEHTDIKCNK 686 Query: 109 CRTGHLVQRRSRYGKTFHSCDRYPECQ 135 C + ++++ + G F +C +P+C+ Sbjct: 687 CGS-EMLKKIGKRGP-FLTCSAFPKCR 711 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 16/113 (14%) Query: 42 DYVRPLK---SSADGHIVKV-----LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 D+ +P K S A+ ++ K ++CP CG N+V+R R F+GC YPEC+ T Sbjct: 553 DFYKPFKKDLSEAEKNLQKQKVQAQQTSEICPNCGKNMVIRYSRKVQFLGCSGYPECKTT 612 Query: 94 ELIDK-------PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 +DK P ET + C +C + HL+++ GK + SC YPEC+ N Sbjct: 613 LSLDKDGKIAAAPRETDMKCDKCGS-HLIKKTGFAGKQYLSCKNYPECKTLYN 664 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 7/87 (8%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQ----VCPACGA 69 C KCG+ L+ ++G G +L C YP C + + + DG+ + E + C CG+ Sbjct: 632 CDKCGSHLIKKTGFAGKQYLSCKNYPECKTLYNI--NKDGNKIIYPEPEHTDIKCNKCGS 689 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELI 96 ++ + G+ G F+ C +P+C + + I Sbjct: 690 EMLKKIGKRGPFLTCSAFPKCRNLQWI 716 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 26/36 (72%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 C KCG+E++ + GK GPFL CS +P C ++ +K++ Sbjct: 684 CNKCGSEMLKKIGKRGPFLTCSAFPKCRNLQWIKTN 719 >UniRef50_A6VXG1 DNA topoisomerase type IA zn finger domain protein n=2 Tax=Marinomonas RepID=A6VXG1_MARMS Length = 171 Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 5/126 (3%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CPKC + LV++ G +G F GC YP C+Y ++ +G V+ + +CPAC + L + Sbjct: 38 CPKCESLLVLKEGANGAFWGCESYPVCNYT---ANNENGKPVRA-KRYLCPACQSPLRRK 93 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT-GHLVQRRSRYGKTFHSCDRYPE 133 + F GC NYPEC+ T D ++ CR GH + R+ F C YP Sbjct: 94 AFKDNAFWGCSNYPECKVTVEDDNGVPSSTKKYPCRACGHYLVRKKSKNGYFWGCITYPV 153 Query: 134 CQFAIN 139 C +N Sbjct: 154 CTNTLN 159 Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 14/127 (11%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELID--KPDETA- 103 L S D HI CP C + LVL++G G F GC +YP C +T + KP Sbjct: 21 LDQSDDAHIKSAKIRYRCPKCESLLVLKEGANGAFWGCESYPVCNYTANNENGKPVRAKR 80 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI---NFKPIAGE---CPEC-HYPLLI 156 CP C++ ++R++ F C YPEC+ + N P + + C C HY L+ Sbjct: 81 YLCPACQSP--LRRKAFKDNAFWGCSNYPECKVTVEDDNGVPSSTKKYPCRACGHY--LV 136 Query: 157 EKKTAQG 163 KK+ G Sbjct: 137 RKKSKNG 143 >UniRef50_A6G953 DNA topoisomerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G953_9DELT Length = 891 Score = 72.8 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 17/146 (11%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CPKCGA R G++G FL C+ YP CDY P+ + + ++ V P G+++ LR Sbjct: 676 CPKCGARTCYRFGRNGRFLSCTAYPECDYAAPIDRKGRPLLPERVD-IVSPEDGSSMELR 734 Query: 75 QGRFGMFIGCINYPECEHTELIDKPD--------------ETAITCPQCRTGHLVQRRSR 120 GRFG F+ NY + +D+ E I C +C ++R +R Sbjct: 735 NGRFGKFLASENYEKGSFVLNLDRKGNIKYPAIPPLVIDVEEGIQCVKCDAPLNLRRGAR 794 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGE 146 + C R+P+C+ + +K + E Sbjct: 795 --GPWLGCSRFPKCRGRLAWKTLDEE 818 >UniRef50_Q2RKN9 DNA topoisomerase I n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKN9_MOOTA Length = 1041 Score = 72.4 bits (176), Expect = 7e-12, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 3/83 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYP--ACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 SCP CG +R+GKHGPF GC+ + C + + V+ LE CP CG + Sbjct: 958 SCPLCGGTTGLRTGKHGPFFGCASFRNGGCKGLINIPRRVLELAVQDLE-LTCPHCGGKV 1016 Query: 72 VLRQGRFGMFIGCINYPECEHTE 94 VL+ GR G F+GC YP+C T+ Sbjct: 1017 VLKSGRNGAFLGCSRYPDCRWTD 1039 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP--------DETAITCPQCRTGHLV 115 CP CG LR G+ G F GC ++ LI+ P + +TCP C G +V Sbjct: 959 CPLCGGTTGLRTGKHGPFFGCASFRNGGCKGLINIPRRVLELAVQDLELTCPHC-GGKVV 1017 Query: 116 QRRSRYGKTFHSCDRYPECQFAINF 140 + R G F C RYP+C++ +F Sbjct: 1018 LKSGRNG-AFLGCSRYPDCRWTDSF 1041 >UniRef50_Q5V1P3 DNA topoisomerase I n=1 Tax=Haloarcula marismortui RepID=Q5V1P3_HALMA Length = 1364 Score = 71.2 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 10/128 (7%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKCG ++++R + G F+GC +P C PL S+ + +VLE ++ + Sbjct: 1135 CPKCGEDMLVRRSRQGSYFVGCDGFPECRNTLPLPSTGEP---QVLEDHCEEHDMHHVKM 1191 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGH---LVQRRSRYGKTFHSCDR 130 GR GC P CE + + DE CP+C + H L + R G C R Sbjct: 1192 LAGRDTFVHGC---PRCEAEKADESEDEVIGPCPECGSEHDGDLAIKHLRSGSRLVGCTR 1248 Query: 131 YPECQFAI 138 YP+C +++ Sbjct: 1249 YPDCDYSL 1256 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 EH + K D+T CP+C LV RRSR G F CD +PEC+ + P GE Sbjct: 1120 EHLQESLKADKTLGPCPKCGEDMLV-RRSRQGSYFVGCDGFPECRNTLPL-PSTGE 1173 >UniRef50_B1AJN1 DNA topoisomerase I n=15 Tax=Ureaplasma RepID=B1AJN1_UREP2 Length = 681 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 62 QVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP C +L++++ R FI C N+P C TE ++KP+ CP C + LV+R++R Sbjct: 591 RLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLEKPEILNELCPNC-SKSLVKRKNR 649 Query: 121 YGKTFHSCDRYPECQFAINF 140 K F C YPEC F N Sbjct: 650 KNKYFIGCTGYPECNFIRNL 669 Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 9/91 (9%) Query: 12 NESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 N CP C +L+I RS + F+ CS +P C + L+ + ++CP C + Sbjct: 590 NRLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLEKPE-------ILNELCPNCSKS 642 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPD 100 LV R+ R FIGC YPEC +D+ + Sbjct: 643 LVKRKNRKNKYFIGCTGYPECNFIRNLDESN 673 >UniRef50_A1U3N5 DNA topoisomerase n=6 Tax=Gammaproteobacteria RepID=A1U3N5_MARAV Length = 722 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 11/101 (10%) Query: 1 MAKSALFTVRNNES------CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK--SSAD 52 MA++ + N E+ CPKC A +V R GK G F C++YPAC RPL+ D Sbjct: 609 MAQAPAAGLANTETPGTAIHCPKCRAPMVEREGKFGAFFACTRYPACKGTRPLEDHQPED 668 Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 G K + CP C + LV R+ G F GC N+P C T Sbjct: 669 GTSQKPVP---CPHCFSPLVRRKSNKGWFWGCSNFPGCRQT 706 Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELI------DKPDETAITCPQCRTGHLVQR 117 CP C A +V R+G+FG F C YP C+ T + D + + CP C + LV+R Sbjct: 629 CPKCRAPMVEREGKFGAFFACTRYPACKGTRPLEDHQPEDGTSQKPVPCPHCFSP-LVRR 687 Query: 118 RSRYGKTFHSCDRYPECQFAIN 139 +S G F C +P C+ ++ Sbjct: 688 KSNKG-WFWGCSNFPGCRQTVD 708 Score = 42.7 bits (99), Expect = 0.006, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 16/73 (21%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC-----------QFAINFKPIAGECPEC 150 TAI CP+CR +V+R ++G F +C RYP C + + KP+ CP C Sbjct: 625 TAIHCPKCR-APMVEREGKFG-AFFACTRYPACKGTRPLEDHQPEDGTSQKPVP--CPHC 680 Query: 151 HYPLLIEKKTAQG 163 P L+ +K+ +G Sbjct: 681 FSP-LVRRKSNKG 692 >UniRef50_Q8EVZ3 DNA topoisomerase n=1 Tax=Mycoplasma penetrans RepID=Q8EVZ3_MYCPE Length = 707 Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 3/83 (3%) Query: 61 GQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G+ CP CG +L+ ++ R G FIGC YPEC H E ++KP+E I+CP+C + L++R+ Sbjct: 592 GRECPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEISCPECGS-KLLKRK 650 Query: 119 SRYGKTFHSCDRYPECQFAINFK 141 S+ + F C +P+C + I+ K Sbjct: 651 SKRQQVFVGCSSWPKCNYIISDK 673 Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 13/90 (14%) Query: 15 CPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CPKCG +L+ + + G F+GCS YP C ++ PL+ + I CP CG+ L+ Sbjct: 595 CPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEI-------SCPECGSKLL 647 Query: 73 LRQG-RFGMFIGCINYPECEHT---ELIDK 98 R+ R +F+GC ++P+C + +L DK Sbjct: 648 KRKSKRQQVFVGCSSWPKCNYIISDKLFDK 677 Score = 41.6 bits (96), Expect = 0.013, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG---ECPECHYPLLIEKKTAQ 162 CP+C L +R R G F C YPEC + CPEC LL K Q Sbjct: 595 CPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEISCPECGSKLLKRKSKRQ 654 Query: 163 GVKHFCAS 170 V C+S Sbjct: 655 QVFVGCSS 662 Score = 40.8 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Query: 14 SCPKCGAELVIR-SGKHGPFLGCSQYPACDYV 44 SCP+CG++L+ R S + F+GCS +P C+Y+ Sbjct: 638 SCPECGSKLLKRKSKRQQVFVGCSSWPKCNYI 669 >UniRef50_O83409 DNA topoisomerase 1 n=4 Tax=Treponema RepID=TOP1_TREPA Length = 731 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 6/112 (5%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQRRSRY 121 VC CG +V + GRFG F+ C +PEC +T+ + CP+ G++V +++R Sbjct: 590 VCSQCGDTMVKKLGRFGFFLACGKFPECRNTQPV-----PLAKCPRPACDGNIVGKKTRG 644 Query: 122 GKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 K F+ C R+P C F +FKP CP+C L+ + G C + +C Sbjct: 645 RKEFYGCTRFPVCDFVTHFKPTFAVCPQCRCFLVEKSNRRVGTYTACVNPEC 696 Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC- 64 +F + + C +CG +V + G+ G FL C ++P C +P+ + C Sbjct: 582 VFDEKTDVVCSQCGDTMVKKLGRFGFFLACGKFPECRNTQPVPLAK------------CP 629 Query: 65 -PACGANLVLRQGR-FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 PAC N+V ++ R F GC +P C+ KP T CPQCR LV++ +R Sbjct: 630 RPACDGNIVGKKTRGRKEFYGCTRFPVCDFVTHF-KP--TFAVCPQCRC-FLVEKSNRRV 685 Query: 123 KTFHSCDRYPECQFA 137 T+ +C PEC++ Sbjct: 686 GTYTACVN-PECRYV 699 >UniRef50_Q3SMS7 DNA topoisomerase n=8 Tax=Proteobacteria RepID=Q3SMS7_THIDA Length = 857 Score = 66.2 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 5/78 (6%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK-SSADGHIVKVLEGQVCPACGANL 71 E+CPKC L +++ K G F+GCS YP CDY RPL ++A+G + + PA G ++ Sbjct: 572 EACPKCAKPLFMQASKRGLFIGCSGYPECDYTRPLHPATAEGDNILGKD----PASGLDV 627 Query: 72 VLRQGRFGMFIGCINYPE 89 L GRFG ++ + PE Sbjct: 628 KLLSGRFGPYVQIGDMPE 645 Score = 42.7 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 21/32 (65%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 + CP C L ++ + G+FIGC YPEC++T Sbjct: 572 EACPKCAKPLFMQASKRGLFIGCSGYPECDYT 603 >UniRef50_Q6XZ01 DNA topoisomerase n=2 Tax=Spiroplasma RepID=Q6XZ01_SPIKU Length = 664 Score = 65.5 bits (158), Expect = 9e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G CP CG +LV R G++G FI C +P+C + I + CP+C G ++ + ++ Sbjct: 564 GIECPECGNDLVYRYGKYGKFIACSGFPKCHY---IHQTGPKFGPCPECGVGEIILKFNK 620 Query: 121 YGKTFHSCDRYPECQFAINFK 141 + F +C YP C + ++K Sbjct: 621 RRQRFKACTNYPNCNYTDSYK 641 Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 12/82 (14%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-ANLVL 73 CP+CG +LV R GK+G F+ CS +P C Y+ H G CP CG ++L Sbjct: 567 CPECGNDLVYRYGKYGKFIACSGFPKCHYI---------HQTGPKFGP-CPECGVGEIIL 616 Query: 74 R-QGRFGMFIGCINYPECEHTE 94 + R F C NYP C +T+ Sbjct: 617 KFNKRRQRFKACTNYPNCNYTD 638 Score = 45.8 bits (107), Expect = 7e-04, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 88 PECEHT-ELIDK--PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 P E T EL+++ +++ I CP+C LV R +YGK F +C +P+C + P Sbjct: 546 PRIEATMELMEEIPVEKSGIECPEC-GNDLVYRYGKYGK-FIACSGFPKCHYIHQTGPKF 603 Query: 145 GECPEC 150 G CPEC Sbjct: 604 GPCPEC 609 >UniRef50_UPI00016C444E DNA topoisomerase I n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C444E Length = 985 Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%) Query: 13 ESCPKCGAELVIR--SGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPAC 67 E CPKCG ++ R + G F GC+ Y P C Y++P A+ V + CPAC Sbjct: 713 EKCPKCGRDMQKRYSTTTGGFFEGCTGYSADPPCKYIKPRPGEAEREGPTVTD-IPCPAC 771 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-------CPQCRTGHLVQRRSR 120 G ++V + GRFG+F C P+C T + +T CP+C +L+ + S+ Sbjct: 772 GKHMVRKVGRFGVFYTCEGAPDCPTTMNENAEGVRTVTALPTKHKCPKCEKHNLLLKESK 831 Query: 121 YGKTFHSC 128 GK + C Sbjct: 832 AGKKYVQC 839 Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 20/91 (21%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE------------- 60 +C KCG+ +VI+ GPFL CS YP C + + + + +L Sbjct: 865 ACEKCGSPMVIKVAWRGPFLSCSGYPKCRNAKSINAELREKLKDILPPPQEKVEKKEDPA 924 Query: 61 -----GQVCPACGANLVLRQGRF--GMFIGC 84 + CP CGA L LR+ RF G ++GC Sbjct: 925 LSVEVTETCPECGAPLKLRKSRFGPGYYLGC 955 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 25/154 (16%) Query: 43 YVRPLKSS-ADGHIVKVLEGQVCPACGANLVLRQGRF--GMFIGCINY---PECEHTE-- 94 + + LKS+ A+ + + L G+ CP CG ++ R G F GC Y P C++ + Sbjct: 693 FSKTLKSADAEMPVARELTGEKCPKCGRDMQKRYSTTTGGFFEGCTGYSADPPCKYIKPR 752 Query: 95 ----LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK--------- 141 + P T I CP C H+V++ R+G F++C+ P+C +N Sbjct: 753 PGEAEREGPTVTDIPCPAC-GKHMVRKVGRFG-VFYTCEGAPDCPTTMNENAEGVRTVTA 810 Query: 142 -PIAGECPECHYPLLIEKKTAQGVKHF-CASKQC 173 P +CP+C L+ K++ G K+ C +C Sbjct: 811 LPTKHKCPKCEKHNLLLKESKAGKKYVQCPDAKC 844 Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 32/140 (22%) Query: 15 CPKCGA-ELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLE-GQVCPACGANL 71 CPKC L+++ K G ++ C C ++ + ADG VK + G C CG+ + Sbjct: 817 CPKCEKHNLLLKESKAGKKYVQCPDA-KCKFIS--DADADGAPVKPADTGVACEKCGSPM 873 Query: 72 VLRQGRFGMFIGCINYPECEHT-------------------ELIDKPDETAI------TC 106 V++ G F+ C YP+C + E ++K ++ A+ TC Sbjct: 874 VIKVAWRGPFLSCSGYPKCRNAKSINAELREKLKDILPPPQEKVEKKEDPALSVEVTETC 933 Query: 107 PQCRTGHLVQRRSRYGKTFH 126 P+C L R+SR+G ++ Sbjct: 934 PEC-GAPLKLRKSRFGPGYY 952 >UniRef50_Q2BNY9 Helicase IV n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNY9_9GAMM Length = 952 Score = 62.0 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 18/104 (17%) Query: 15 CPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC--------- 64 C C L+ R G HG F+GCS YP C+Y + + E ++C Sbjct: 849 CRSCESGTLIKREGPHGTFMGCSNYPLCNYKESTCPRCNSTMNNSNEYRICSNSSCSWWI 908 Query: 65 ---PACGANLVLRQGRFGMFIGCINYPE-----CEHTELIDKPD 100 P CG NL++R+ +G F GC NY C + I+ P+ Sbjct: 909 PICPECGGNLMMRESHYGKFWGCENYRSVGSSCCHRQKFIEPPE 952 >UniRef50_P78032 DNA topoisomerase 1 n=2 Tax=Mycoplasma RepID=TOP1_MYCPN Length = 711 Score = 62.0 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 15/100 (15%) Query: 51 ADGHIVKVLE-----GQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELI-DKPDET 102 A+G I +V + G+ CP+C + L+ R + G F+GC N+P C++ E +KP+ T Sbjct: 606 AEGSIQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLT 665 Query: 103 ----AITCPQCRTGHLVQRRSRY--GKTFHSCDRYPECQF 136 CP+C + LV+RR+++ KTF C +P C++ Sbjct: 666 LEKLEELCPECNS-QLVKRRTKFNPNKTFVGCSNFPRCRY 704 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%) Query: 15 CPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP C + L+ R K G F+GCS +P C Y ++ + + K+ E +CP C + LV Sbjct: 624 CPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLTLEKLEE--LCPECNSQLV 681 Query: 73 LRQGRFG---MFIGCINYPECEHTE 94 R+ +F F+GC N+P C + + Sbjct: 682 KRRTKFNPNKTFVGCSNFPRCRYIK 706 Score = 41.6 bits (96), Expect = 0.012, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Query: 13 ESCPKCGAELVIRSGKHGP---FLGCSQYPACDYVRPLKSS 50 E CP+C ++LV R K P F+GCS +P C Y++ +S Sbjct: 671 ELCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKDNAS 711 >UniRef50_B1M0P4 DNA topoisomerase n=14 Tax=Alphaproteobacteria RepID=B1M0P4_METRJ Length = 894 Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 15/85 (17%) Query: 11 NNESCPKCGA-ELVIRSGKHGPFLGCSQYPACDYVRPLK----------SSADGHI--VK 57 N +CP CG+ +L ++ GK G F+GCS YP C Y R L SSA+G V+ Sbjct: 600 NPRTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYTRQLSATGIDGDGDGSSAEGGQPGVR 659 Query: 58 VLEGQVCPACGANLVLRQGRFGMFI 82 VL PA G + LR GRFG F+ Sbjct: 660 VLGDD--PATGLPVTLRDGRFGPFL 682 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 1/33 (3%) Query: 62 QVCPACGA-NLVLRQGRFGMFIGCINYPECEHT 93 + CP CG+ L L+ G+FG FIGC NYPEC++T Sbjct: 602 RTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYT 634 >UniRef50_D2LPU9 DNA topoisomerase I n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LPU9_9EURY Length = 764 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 64 CPACGANLV--LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP CG L+ +R+G+ I C+N +CE+ ++ + CP+C G LV R+S+ Sbjct: 644 CPICGLPLIKIIRRGQ-SPEIRCLN-SKCEY----NRKKDIVGKCPKC-GGDLVIRQSKN 696 Query: 122 GKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 GK F C YP+C + P CP C PLLI +K + FC + +C Sbjct: 697 GKRFIGCSNYPKCDVTYSLPQRGKIIPTGEVCPYCGAPLLILRKKGKKDWKFCPNIKC 754 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 5/60 (8%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKCG +LVIR K+G F+GCS YP CD L G I+ G+VCP CGA L++ Sbjct: 682 CPKCGGDLVIRQSKNGKRFIGCSNYPKCDVTYSLPQR--GKIIPT--GEVCPYCGAPLLI 737 >UniRef50_D1BLQ5 DNA topoisomerase n=3 Tax=Veillonella RepID=D1BLQ5_VEIPT Length = 773 Score = 60.8 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 18/104 (17%) Query: 45 RPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELID------ 97 RP+ S + V + VCP C L R G+FG F+GC NYP C+HT+ ++ Sbjct: 655 RPMDSES----VDLSSLPVCPKCKKGRLQQRNGKFGAFLGCTNYPTCKHTQPVEGDTSSV 710 Query: 98 ------KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ 135 ++ CP+C G+ V++ R G+T C +C+ Sbjct: 711 EGNIEVSDEDKQYKCPRCNVGYFVKQEVR-GRTNWICSNRSQCK 753 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 11/86 (12%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLK---SSADGHIVKVLEGQV--CPACG 68 CPKC L R+GK G FLGC+ YP C + +P++ SS +G+I E + CP C Sbjct: 670 CPKCKKGRLQQRNGKFGAFLGCTNYPTCKHTQPVEGDTSSVEGNIEVSDEDKQYKCPRCN 729 Query: 69 ANLVLRQ---GRFGMFIGCINYPECE 91 ++Q GR C N +C+ Sbjct: 730 VGYFVKQEVRGRTNWI--CSNRSQCK 753 >UniRef50_Q9HM08 DNA topoisomerase 1 n=4 Tax=Thermoplasmatales RepID=TOP1_THEAC Length = 770 Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 16/123 (13%) Query: 59 LEGQVCPACGANLV--LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 L Q CP CG ++ +R+G+ I CI+ P+C + ++ +E CP G LV Sbjct: 630 LSDQKCPVCGLPMIKIIRKGQ-SPEIKCID-PDCSY----NRENEDYGECP-ADHGRLVL 682 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIA-----GE-CPECHYPLLIEKKTAQGVKHFCAS 170 R+S+YGK F C YP+C + GE CP C P+L + + K FC + Sbjct: 683 RQSKYGKRFLGCSNYPKCTVTYPLPQMGRITKTGEVCPYCGAPILALSRNGRKWK-FCPN 741 Query: 171 KQC 173 QC Sbjct: 742 MQC 744 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 13/91 (14%) Query: 10 RNNE---SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 R NE CP LV+R K+G FLGCS YP C PL G I K G+VCP Sbjct: 665 RENEDYGECPADHGRLVLRQSKYGKRFLGCSNYPKCTVTYPLPQM--GRITKT--GEVCP 720 Query: 66 ACGANLVL--RQGRFGMFIGCINYPECEHTE 94 CGA ++ R GR F C N +CE+ + Sbjct: 721 YCGAPILALSRNGRKWKF--CPNM-QCEYNK 748 >UniRef50_B1VAJ5 DNA topoisomerase n=6 Tax=Acholeplasmataceae RepID=B1VAJ5_PHYAS Length = 655 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 13/92 (14%) Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHT-----------ELIDKPDETAITCPQC 109 Q C C NL++++ +G F+GC +P+C++T + D ++T C C Sbjct: 559 QKCNLCNEGNLLIKKSHYGSFLGCSRFPDCKNTSPWKVQEKNKSKDSDHSNQTDQKCNLC 618 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 G+L+ ++SRYG +F C R+P+C+ + K Sbjct: 619 NEGNLLIKKSRYG-SFLGCSRFPDCKNIVKIK 649 Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 11/101 (10%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPL------KSSADGHIVKVLEG 61 + ++ C C L+I+ +G FLGCS++P C P KS H + Sbjct: 555 IETDQKCNLCNEGNLLIKKSHYGSFLGCSRFPDCKNTSPWKVQEKNKSKDSDHSNQT--D 612 Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEH-TELIDKPD 100 Q C C NL++++ R+G F+GC +P+C++ ++ +KP+ Sbjct: 613 QKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVKIKNKPN 653 >UniRef50_C6P2V7 DNA topoisomerase n=2 Tax=Proteobacteria RepID=C6P2V7_9PROT Length = 876 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 E+CPKCG L R GK G F+GC+ YP CDY R L D + GQ P ++ Sbjct: 585 ETCPKCGKPLSKRLGKRGSFIGCTGYPECDYTRSLGGEEDAGESRKELGQ-HPDTNQLVL 643 Query: 73 LRQGRFGMFIGCINYPECEHTE 94 L +G +G ++ E E T+ Sbjct: 644 LLRGPYGPYVQLGEMIEGEKTK 665 >UniRef50_B7I2H2 DNA topoisomerase n=4 Tax=Proteobacteria RepID=B7I2H2_ACIB5 Length = 672 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 22/99 (22%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDK---------PDETAITCPQCRTGHL 114 CPACG L R+G++G F C YPEC+ + DK P T CP+C G Sbjct: 561 CPACGKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPPSTGFQCPKC--GKE 618 Query: 115 VQRRSRYGK-----------TFHSCDRYPECQFAINFKP 142 + RR K F+SC YP+C + P Sbjct: 619 LARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQTGP 657 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 13/90 (14%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGH--IVKVLEGQVCPACGANLV 72 CP CG L R G++G F C+ YP C P G G CP CG L Sbjct: 561 CPACGKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPPSTGFQCPKCGKELA 620 Query: 73 LRQG-----RFGM------FIGCINYPECE 91 RQG + GM F C YP+C+ Sbjct: 621 RRQGVSKPKKKGMKGRPYDFYSCTGYPKCD 650 >UniRef50_D2J7M2 Putative uncharacterized protein n=2 Tax=Staphylococcus aureus RepID=D2J7M2_STAAU Length = 201 Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 28/37 (75%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 NNE CP+C +LV+R+GK+G FLGCS YP C Y + + Sbjct: 165 NNEKCPRCNHKLVVRTGKNGQFLGCSNYPNCKYTKNI 201 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 40 ACDYVRPLKSSADGHIVKV----LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 ACD V ++S I+ + + CP C LV+R G+ G F+GC NYP C++T+ Sbjct: 141 ACDVVMKDRTSLSKWIISINPDFSNNEKCPRCNHKLVVRTGKNGQFLGCSNYPNCKYTKN 200 Query: 96 I 96 I Sbjct: 201 I 201 >UniRef50_B8EMQ0 DNA topoisomerase n=153 Tax=Alphaproteobacteria RepID=B8EMQ0_METSB Length = 977 Score = 55.5 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 6/74 (8%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKS-----SADGHIVKVLEGQVCPACG 68 CP CG +L ++ GK G F+GCS YP C + R L + + G V V P G Sbjct: 604 CPSCGEGKLSLKLGKFGAFIGCSNYPECKFTRTLAAPDGAEANGGERPGVKSLGVDPDSG 663 Query: 69 ANLVLRQGRFGMFI 82 + LR GRFG+++ Sbjct: 664 EEITLRDGRFGVYV 677 Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%) Query: 64 CPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 CP+CG L L+ G+FG FIGC NYPEC+ T + PD Sbjct: 604 CPSCGEGKLSLKLGKFGAFIGCSNYPECKFTRTLAAPD 641 >UniRef50_A7IJK3 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IJK3_XANP2 Length = 170 Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 12/103 (11%) Query: 15 CPKCGAELVIR-SGKHGPFLGCSQYPACDYVRPL-----KSSADGHIVKVLE----GQVC 64 CPKCG + R G++GPF CS +P CD+ R + ++ A + V++ G C Sbjct: 61 CPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYC 120 Query: 65 PACG-ANLVLRQ-GRFGMFIGCINYPECEHTELIDKPDETAIT 105 P CG ++V+R G + F+ C YP C+ T +D E T Sbjct: 121 PTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEGGAT 163 >UniRef50_A7ZI15 Helicase, UvrD family n=1 Tax=Escherichia coli E24377A RepID=A7ZI15_ECO24 Length = 1010 Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 13/83 (15%) Query: 94 ELIDKPDETAIT---CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 +LI K D I CP C +G L + SRY K F+ C P C + +A C +C Sbjct: 872 QLITKSDSLEIGQWHCPDCESGCLTGKVSRYDKKFYVCSHSPACDY------MASACKQC 925 Query: 151 HYPLLIEKKTAQGVKHFCASKQC 173 P+++ G++ CA+ +C Sbjct: 926 SSPMVMH----NGLQRICANPEC 944 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 35/121 (28%) Query: 15 CPKCGAELVIRSGK----HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CP C + + +GK F CS PACDY+ C C + Sbjct: 887 CPDCESGCL--TGKVSRYDKKFYVCSHSPACDYM----------------ASACKQCSSP 928 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 +V+ G + C N PEC+ E++ C +C G +++R+++ G F+ C+R Sbjct: 929 MVMHNGLQRI---CAN-PECQEIEIV---------CRRCGLGTMLKRKNKDGGVFYGCNR 975 Query: 131 Y 131 Y Sbjct: 976 Y 976 >UniRef50_A5UN47 Helicase, UvrD/REP family n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5UN47_METS3 Length = 661 Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 13/91 (14%) Query: 13 ESCPKCGAELVIR---SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 E CP C L+ R S H PFLGC+ + R G ++ + G+ CP CG Sbjct: 575 EYCPSCDGILIKRYRHSDGH-PFLGCTNF------RKTGCRGKGKKLEYI-GKTCPKCGK 626 Query: 70 NLVLRQG--RFGMFIGCINYPECEHTELIDK 98 LV R +F+GC +P+C HTE K Sbjct: 627 PLVKRVNGEDNSLFVGCSGFPKCRHTEPFKK 657 >UniRef50_A0LAP8 DNA topoisomerase n=13 Tax=cellular organisms RepID=A0LAP8_MAGSM Length = 744 Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 14/88 (15%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECE----------HTELIDKPDETAITCPQCRTG 112 +CP CG ++ R+ G F C C H+ L+ E CP+C+ Sbjct: 648 LCPQCGGPMLQRKSPQGAFWSCAEQATCTGTRPGSPLAAHSPLMQPNPERGPLCPKCQQA 707 Query: 113 HLVQRRSRYGKT----FHSCDRYPECQF 136 LVQR + GK F C RYP+C++ Sbjct: 708 PLVQRTAYRGKNSGQPFWGCQRYPQCRY 735 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 9/89 (10%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVR---PLKSSADGHIVKVLEGQVCPAC-GAN 70 CP+CG ++ R G F C++ C R PL + + G +CP C A Sbjct: 649 CPQCGGPMLQRKSPQGAFWSCAEQATCTGTRPGSPLAAHSPLMQPNPERGPLCPKCQQAP 708 Query: 71 LVLRQGRFGM-----FIGCINYPECEHTE 94 LV R G F GC YP+C +T+ Sbjct: 709 LVQRTAYRGKNSGQPFWGCQRYPQCRYTQ 737 >UniRef50_O28469 DNA topoisomerase 1 n=8 Tax=Euryarchaeota RepID=TOP1_ARCFU Length = 663 Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 8/105 (7%) Query: 40 ACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDK 98 A DY + K +G + G+ CP CG LV+RQ + G FIGC NYP+C T + + Sbjct: 560 AIDYRKLSKDLREGVKKDKIVGK-CPECGGELVVRQSKAGKRFIGCSNYPDCTFTLPLPQ 618 Query: 99 PDETAITCPQCRTGHL--VQRRSRYGKTFHSCDRYPECQFAINFK 141 IT QC+ + V+ R++ G C P C + +N+K Sbjct: 619 NGTLYITAKQCKEHEIKEVKIRTKKGYWNLGC---PYCNY-LNWK 659 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHI 55 CP+CG ELV+R K G F+GCS YP C + PL + +I Sbjct: 583 CPECGGELVVRQSKAGKRFIGCSNYPDCTFTLPLPQNGTLYI 624 >UniRef50_O27661 DNA topoisomerase 1 n=4 Tax=Methanobacteriaceae RepID=TOP1_METTH Length = 718 Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 33/112 (29%) Query: 15 CPKCGAELVIRSG--KHGPFLGCSQYPACDYVRPLKSSAD-------------------- 52 CP CG +LVI+ F+GCS YP C V L A Sbjct: 598 CPACGGKLVIKYSPRNRSTFVGCSSYPDCRTVYSLPRGASVLKSLCEKCGLPMISYGRPR 657 Query: 53 ---------GHIVKVLEGQV--CPACGANLVLRQGRFGMFIGCINYPECEHT 93 G +E V CP CG++L+ R GR+G F+GC +P+C T Sbjct: 658 QRACLDPKCGKKKSEVEEVVGKCPECGSDLIKRSGRYGEFVGCKGFPKCRFT 709 >UniRef50_C6XEP4 DNA topoisomerase I n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEP4_METSD Length = 590 Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 21/38 (55%), Positives = 24/38 (63%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA 51 SCPKCG +V R+G GPFLGCS YP C + L A Sbjct: 553 SCPKCGKGMVQRTGSRGPFLGCSGYPKCKETQQLPKGA 590 Score = 43.1 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 22/35 (62%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDK 98 CP CG +V R G G F+GC YP+C+ T+ + K Sbjct: 554 CPKCGKGMVQRTGSRGPFLGCSGYPKCKETQQLPK 588 >UniRef50_Q4QPE8 DNA topoisomerase n=23 Tax=Proteobacteria RepID=Q4QPE8_HAEI8 Length = 686 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 CPKCGA ++ R+GK+G F GCS YP C ++ + S + Sbjct: 622 CPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKN 659 Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 26/44 (59%) Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 +E + CP CGA ++ R G+ G F GC YP C+H E ID T Sbjct: 617 IEIRKCPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKNT 660 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 24/33 (72%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CP+CG EL R+GK GPF GCS YPAC Y + + Sbjct: 230 CPRCGGELTKRNGKFGPFYGCSNYPACRYTKNI 262 Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 27/44 (61%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 G ++K + VCP CG L R G+FG F GC NYP C +T+ I Sbjct: 219 GKLLKDADIPVCPRCGGELTKRNGKFGPFYGCSNYPACRYTKNI 262 >UniRef50_D2EGP7 DNA topoisomerase n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGP7_9EURY Length = 703 Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 9/82 (10%) Query: 14 SCPKCGAEL--VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +CPK G +L V+ H F+GCS YP C + PL S G+ + Q CP CG ++ Sbjct: 612 TCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQS--GYF--FISPQSCPKCGIHM 667 Query: 72 VLRQGRFG--MFIGCINYPECE 91 + + +I C+N P C+ Sbjct: 668 IEWHAKESKRTYIFCVN-PACK 688 >UniRef50_Q39UP7 DNA topoisomerase I:Restriction endonuclease n=3 Tax=Proteobacteria RepID=Q39UP7_GEOMG Length = 355 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 15/85 (17%) Query: 14 SCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPLKSSADGHIVKVL--------- 59 +CPKCGAE+ R + G F GCS YP C + P+ + D KV Sbjct: 242 NCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQAKVTMQPTIPPVD 301 Query: 60 -EGQVCPACGANLVLRQGRFGMFIG 83 ++CP CG LVLRQ + G IG Sbjct: 302 ASKKLCPQCGEELVLRQFQSGPRIG 326 >UniRef50_A7VHI2 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VHI2_9CLOT Length = 248 Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 15/87 (17%) Query: 23 VIRSGKHGPFLGCSQYPACDYVRPL-KSSAD---GHIVKVLEGQ-----------VCPAC 67 VI+S K F D ++ + ++S+D GH+ ++ E Q +CP C Sbjct: 159 VIKSYKEPVFTQDEIKQLADRIKTINEASSDLRVGHVKRIKEAQNIRKNNKEVQRICPKC 218 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTE 94 G +V ++G++G F+GC NYP C +T+ Sbjct: 219 GGKIVYKRGKYGKFLGCTNYPNCRYTK 245 Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 4/43 (9%) Query: 10 RNNES----CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 +NN+ CPKCG ++V + GK+G FLGC+ YP C Y + +K Sbjct: 206 KNNKEVQRICPKCGGKIVYKRGKYGKFLGCTNYPNCRYTKEMK 248 >UniRef50_C1E9E3 DNA topoisomerase n=1 Tax=Micromonas sp. RCC299 RepID=C1E9E3_9CHLO Length = 1227 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 13/98 (13%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK---VLEGQVCPACGAN 70 CP CG L ++ + G F+GCS YP+C + R L + DG + +E P G + Sbjct: 821 CPGCGTGRLGLKLSRTGGFIGCSNYPSCGHTRQLVNDGDGAVGGGNFPIELGTDPESGGD 880 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 + ++ G +G +I ++ PD++ T PQ Sbjct: 881 VAIQNGPYGPYI---------ELQMPSSPDDSKKTKPQ 909 >UniRef50_D0D7V2 DNA topoisomerase n=1 Tax=Citreicella sp. SE45 RepID=D0D7V2_9RHOB Length = 918 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLK-SSADGHIVKVLEGQVCPACGANLV 72 CPKCG L +++ + G F+GC YP C Y RP+ ADG E + G + Sbjct: 632 CPKCGQGRLHLKTSRTGGFVGCGNYPECTYTRPIAGEGADGE-----ERLLGSHEGDEVW 686 Query: 73 LRQGRFGMFI 82 L+ GRFG ++ Sbjct: 687 LKAGRFGPYV 696 Score = 43.1 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELI 96 ++CP CG L L+ R G F+GC NYPEC +T I Sbjct: 630 RICPKCGQGRLHLKTSRTGGFVGCGNYPECTYTRPI 665 >UniRef50_C6AVQ0 UvrD/REP helicase n=2 Tax=Alphaproteobacteria RepID=C6AVQ0_RHILS Length = 972 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 32/123 (26%) Query: 13 ESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 + C +CG L++ G+ + C CD V P C ACG L Sbjct: 867 QECGECGGRLLVARGQDDRMWFRCEHVQHCDNVLP----------------ACQACGTAL 910 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 P+ E+ A CPQC+ G V+R RYG F SC RY Sbjct: 911 --------------PRPKVGSQEVSCGCGANAPKCPQCKDGWFVERSGRYGP-FLSCVRY 955 Query: 132 PEC 134 P C Sbjct: 956 PSC 958 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Query: 11 NNESCPKC-GAELVIRSGKHGPFLGCSQYPACD 42 N CP+C V RSG++GPFL C +YP+CD Sbjct: 927 NAPKCPQCKDGWFVERSGRYGPFLSCVRYPSCD 959 >UniRef50_D0Z5F5 DNA topoisomerase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z5F5_LISDA Length = 727 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 14/98 (14%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV----CPACGA 69 CP C L+ R+G G F C++YP C P KS K + QV CP C Sbjct: 628 CPNCADGHLIKRNGSKGVFWSCNRYPECKTSFPDKSGKPDTAPKA-KPQVSEFNCPLCQK 686 Query: 70 NLVLRQGRFG------MFIGCINYPECE--HTELIDKP 99 LV R+G+ F GC YP+C+ + E +KP Sbjct: 687 PLVRRKGKSDKDKPEKYFYGCSGYPQCKASYQEQDNKP 724 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 22/110 (20%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDK--- 98 YV +K++ V+ + CP C +L+ R G G+F C YPEC+ T DK Sbjct: 610 YVDKVKTNGVNITVETFD---CPNCADGHLIKRNGSKGVFWSCNRYPECK-TSFPDKSGK 665 Query: 99 --------PDETAITCPQCRTGHLVQRRSRYGKT-----FHSCDRYPECQ 135 P + CP C+ LV+R+ + K F+ C YP+C+ Sbjct: 666 PDTAPKAKPQVSEFNCPLCQKP-LVRRKGKSDKDKPEKYFYGCSGYPQCK 714 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 14/66 (21%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQ-----------FAINFKPIAGE--CPECHY 152 CP C GHL++R G F SC+RYPEC+ A KP E CP C Sbjct: 628 CPNCADGHLIKRNGSKG-VFWSCNRYPECKTSFPDKSGKPDTAPKAKPQVSEFNCPLCQK 686 Query: 153 PLLIEK 158 PL+ K Sbjct: 687 PLVRRK 692 >UniRef50_Q9Z5W4 Topoisomerase n=1 Tax=Pseudomonas aeruginosa RepID=Q9Z5W4_PSEAE Length = 405 Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 26/109 (23%) Query: 8 TVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLK---SSADGHIVKV- 58 T SCP+CG +V+R+ K G F GCS YP C + P++ + D V Sbjct: 290 TPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCRGIIPVEVIVPAEDAGPVPTE 349 Query: 59 ------------LEGQVCPACGANLVLRQGRFG-----MFIGCINYPEC 90 + VCP CG ++VLR + G F GC +P+C Sbjct: 350 QAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKC 398 >UniRef50_B7DM26 NERD domain protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DM26_9BACL Length = 246 Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 23/33 (69%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CP+CG EL IR G+ G F GCS YP C + RP+ Sbjct: 214 CPRCGGELRIRKGQRGEFYGCSNYPRCRFTRPV 246 Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 21/35 (60%) Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 L +CP CG L +R+G+ G F GC NYP C T Sbjct: 209 LAANICPRCGGELRIRKGQRGEFYGCSNYPRCRFT 243 >UniRef50_C4NUW5 DNA topoisomerase n=12 Tax=Gammaproteobacteria RepID=C4NUW5_ECOLX Length = 730 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 7/106 (6%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MAK+ + C CG E+ GK+G F GC Q AC P + + Sbjct: 623 MAKAFEGAKPPSHECFNCGGEMHRIKGKNGFFWGC-QNEACKKTFPDNRGKPEKRIAAED 681 Query: 61 GQVCPACGANLVLRQG------RFGMFIGCINYPECEHTELIDKPD 100 CP CG+ + LR+G R F GC YP+C+ T K D Sbjct: 682 CPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGTMPFKKSD 727 >UniRef50_A4WTK0 UvrD/REP helicase n=8 Tax=Rhodobacterales RepID=A4WTK0_RHOS5 Length = 978 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 49/126 (38%), Gaps = 36/126 (28%) Query: 12 NESCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 N C +CG L+ GK G + C C + P CP+CGA Sbjct: 867 NHVCGECGGRLLGVIGKDGRTWYRCEHAQHCGNLLP----------------ACPSCGAA 910 Query: 71 LVLRQGRFG-MFIGC-INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 L R + GC +YP TCP+CR G LV+R +G+ F C Sbjct: 911 LPRRNEEAAEVRCGCGASYP----------------TCPECRDGWLVERAGSFGR-FLGC 953 Query: 129 DRYPEC 134 RYP C Sbjct: 954 VRYPTC 959 >UniRef50_C6PBC0 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBC0_CLOTS Length = 905 Score = 48.9 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 24/37 (64%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 ++ CPKCG ++IR GK+ FLGCS YP C LK Sbjct: 869 DKRCPKCGNPMIIRKGKYSIFLGCSNYPICKCAVGLK 905 Score = 45.4 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 4/49 (8%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECE 91 Y+ KS+ G +V + CP CG +++R+G++ +F+GC NYP C+ Sbjct: 855 YLELNKSNGIGDVVD----KRCPKCGNPMIIRKGKYSIFLGCSNYPICK 899 >UniRef50_A8SXH4 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SXH4_9FIRM Length = 1162 Score = 48.9 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 +CP CG LV R G+FG FIGC +P+C T+ + Sbjct: 1129 ICPECGKKLVERSGKFGKFIGCSGFPKCRFTQSV 1162 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 17/31 (54%), Positives = 23/31 (74%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 CP+CG +LV RSGK G F+GCS +P C + + Sbjct: 1130 CPECGKKLVERSGKFGKFIGCSGFPKCRFTQ 1160 >UniRef50_UPI0001BCB37F UvrD/REP helicase n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCB37F Length = 1017 Score = 48.9 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 52/96 (54%), Gaps = 10/96 (10%) Query: 38 YPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTEL 95 YP+ ++R L + + + + E ++C ACG++++ R+ F GC +YP+C++TE Sbjct: 915 YPSI-FIRELFDNEEMTLDEYGEKRICKACGSHMIKRKNSITNEEFYGCYHYPKCDYTE- 972 Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 P E CP C + L +S++ + + C+ Y Sbjct: 973 ---PLENINICPICGSKLL---KSKFEENSYYCNNY 1002 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 17/90 (18%) Query: 15 CPKCGAELVIR--SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 C CG+ ++ R S + F GC YP CDY PL++ +CP CG+ L+ Sbjct: 940 CKACGSHMIKRKNSITNEEFYGCYHYPKCDYTEPLENI-----------NICPICGSKLL 988 Query: 73 LRQGRFGMFIGCINYP---ECEHTELIDKP 99 + + C NY E H + + KP Sbjct: 989 KSKFEENSYY-CNNYKRGIEKPHYKTVIKP 1017 >UniRef50_C6A350 DNA topoisomerase I n=3 Tax=Euryarchaeota RepID=C6A350_THESM Length = 1228 Score = 48.5 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%) Query: 14 SCPKCGAELVI----RSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 SCPKCG +LV+ R+GK F+GCS +P C+ PL G I+ G+ C CG Sbjct: 1147 SCPKCGGDLVVRYNRRTGKR--FVGCSNWPNCNVTYPLLQR--GQIIPT--GKTCSECGN 1200 Query: 70 NLVLR 74 +++ Sbjct: 1201 APIIK 1205 Score = 40.8 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%) Query: 57 KVLEGQVCPACGANLVLRQGRF--GMFIGCINYPECEHTELIDKPDE---TAITCPQCRT 111 K++ G CP CG +LV+R R F+GC N+P C T + + + T TC +C Sbjct: 1142 KIIVGS-CPKCGGDLVVRYNRRTGKRFVGCSNWPNCNVTYPLLQRGQIIPTGKTCSECGN 1200 Query: 112 GHLVQRRSR 120 +++ + R Sbjct: 1201 APIIKIKER 1209 >UniRef50_A5FDL0 NERD domain protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FDL0_FLAJ1 Length = 259 Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 25/31 (80%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTE 94 CP CG ++ RQG+FG+F+GC +YP+C +T+ Sbjct: 226 CPKCGNKMIQRQGKFGIFLGCKSYPKCNYTQ 256 Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 17/31 (54%), Positives = 22/31 (70%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 CPKCG +++ R GK G FLGC YP C+Y + Sbjct: 226 CPKCGNKMIQRQGKFGIFLGCKSYPKCNYTQ 256 >UniRef50_Q3BT95 DNA topoisomerase n=14 Tax=Gammaproteobacteria RepID=Q3BT95_XANC5 Length = 670 Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI 55 V + +CP+CGA RSGK GPF CS+YP C P++S + Sbjct: 612 VPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRV 658 Score = 40.8 bits (94), Expect = 0.024, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 21/38 (55%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 +KV G CP CGA R G+ G F C YP+C+ T Sbjct: 610 IKVPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGT 647 >UniRef50_B6RA74 DNA topoisomerase n=6 Tax=Alphaproteobacteria RepID=B6RA74_9RHOB Length = 931 Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 19/87 (21%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQY--------------PACDYVRPLKSSADGHIVKVL 59 CPKC L ++ + G F+GCS Y P CDY R L S D Sbjct: 604 CPKCDTGRLSLKVSRFGAFVGCSNYNKDKKDGKEPNENPPHCDYTRQLTSGGDSDAGAAA 663 Query: 60 EGQ----VCPACGANLVLRQGRFGMFI 82 +G + P G + LR GRFG ++ Sbjct: 664 DGPQVLGIDPETGLEVSLRTGRFGPYV 690 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 19/33 (57%), Positives = 23/33 (69%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 ++CP CG + R GRFG F GCI YP+C HTE Sbjct: 194 KICPECGLPMKKRNGRFGEFWGCIGYPDCRHTE 226 >UniRef50_C9RSM0 DNA topoisomerase n=49 Tax=Bacilli RepID=C9RSM0_GEOSY Length = 697 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 N +CP+CGA L R K G L CS AC Y R L + CP C + Sbjct: 582 NLTCPECGALLKERKTKDGRMLVCSNL-ACRYRRRRDPK--------LSNRRCPQCHRRM 632 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 + +G+ GM Y +C +++K DET + L+++ S ++F Sbjct: 633 EMHEGKAGM------YFQCRPCNIVEKADETKRIAAKGSERALLKKYSPANESF 680 >UniRef50_C9Q4L2 DNA topoisomerase n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L2_9VIBR Length = 736 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 9/93 (9%) Query: 7 FTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPAC------DYVRPLKSSADGHIVKVL 59 F+ R CP C L R G++GPF C++YP C D +P + V Sbjct: 626 FSKRQGMVCPTCQQGTLTKRKGQNGPFWSCNRYPDCKTTFPDDNGKPNLNPKPRQAVTPS 685 Query: 60 EGQVCPACGANLVLRQGRF--GMFIGCINYPEC 90 + C CG LV R G+ + GC +P+C Sbjct: 686 TQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKC 718 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 14/78 (17%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI---NFKPIAGECPECHYPLLIEKK 159 + CP C+ G L +R+ + G F SC+RYP+C+ N KP P + Sbjct: 631 GMVCPTCQQGTLTKRKGQNGP-FWSCNRYPDCKTTFPDDNGKPNLNPKP--------RQA 681 Query: 160 TAQGVKHFCASKQCGKPV 177 + FC KQCG P+ Sbjct: 682 VTPSTQEFC--KQCGNPL 697 Score = 40.0 bits (92), Expect = 0.036, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 20/92 (21%) Query: 60 EGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHT--------ELIDKPDETAIT----- 105 +G VCP C L R+G+ G F C YP+C+ T L KP + A+T Sbjct: 630 QGMVCPTCQQGTLTKRKGQNGPFWSCNRYPDCKTTFPDDNGKPNLNPKPRQ-AVTPSTQE 688 Query: 106 -CPQCRTGHLVQRR--SRYGKTFHSCDRYPEC 134 C QC G+ + RR + G + C +P+C Sbjct: 689 FCKQC--GNPLVRRPGKKEGSFWWGCSGFPKC 718 >UniRef50_C8WG68 DNA topoisomerase type IA central domain protein n=9 Tax=Coriobacteriaceae RepID=C8WG68_EGGLE Length = 849 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 72/174 (41%), Gaps = 26/174 (14%) Query: 15 CPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CPKCG +L +R+ + F+GC+ +P CD PL G + V E CP CG V Sbjct: 639 CPKCGKDLQLRASQKTRSMFIGCAGWPDCDVTYPLPK---GKVEAVPEP--CPTCGMPQV 693 Query: 73 -LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-----TGHLVQRRSRYGKTFH 126 + R CI+ P C + +PD CP C+ + Q+ R K F Sbjct: 694 KVTAFRSKPRTICID-PHCSTNQ---EPDVVVGECPACKEKGIQAKLIAQKNPRTLKRFI 749 Query: 127 SCDRYPEC-------QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C+ Y +C Q+ C C P++I TA+G C + C Sbjct: 750 RCENYDDCGTGYPLPQYGA-LTATEEVCEHCGAPMVI-VTTARGPWKLCPNFDC 801 >UniRef50_C5U8C5 DNA topoisomerase (Fragment) n=1 Tax=Methanocaldococcus infernus ME RepID=C5U8C5_9EURY Length = 344 Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 26/34 (76%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 +CP+CG+ LV++ GK+G F+GC+ +P C + + L Sbjct: 310 TCPRCGSPLVVKEGKYGKFIGCTNFPKCKFTKSL 343 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 16/34 (47%), Positives = 28/34 (82%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELID 97 CP CG+ LV+++G++G FIGC N+P+C+ T+ ++ Sbjct: 311 CPRCGSPLVVKEGKYGKFIGCTNFPKCKFTKSLE 344 >UniRef50_Q9KRB2 DNA topoisomerase 1 n=401 Tax=cellular organisms RepID=TOP1_VIBCH Length = 876 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV------CPACG 68 C KCG+++V+++G+ G ++GC+ AC R K +G + E V C Sbjct: 717 CDKCGSDMVLKNGRFGKYMGCTN-DACKNTR--KILKNGEVAPPKEEPVHFPELPCENSD 773 Query: 69 ANLVLRQGRFGMFIGCINYPECEHT 93 A VLR G G+F N+P+ T Sbjct: 774 AYFVLRDGASGLFFAASNFPKSRET 798 Score = 41.2 bits (95), Expect = 0.015, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 56 VKVLEGQV--CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 VK EG C CG+++VL+ GRFG ++GC N C++T I K E A Sbjct: 707 VKGYEGPTVECDKCGSDMVLKNGRFGKYMGCTN-DACKNTRKILKNGEVA 755 >UniRef50_Q64CK3 DNA topoisomerase n=2 Tax=environmental samples RepID=Q64CK3_9ARCH Length = 681 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 1/39 (2%) Query: 14 SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSA 51 SCPKC ++L++ S + G F+GCS YPAC++ P+ S Sbjct: 591 SCPKCDSDLLLLSSRRGKRFVGCSNYPACEFSLPMPKSG 629 Score = 41.2 bits (95), Expect = 0.015, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 64 CPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQC 109 CP C ++L+L R G F+GC NYP CE + + K +T +C Sbjct: 592 CPKCDSDLLLLSSRRGKRFVGCSNYPACEFSLPMPKSGRVVVTEDKC 638 >UniRef50_C7RD81 NERD domain protein n=4 Tax=Anaerococcus RepID=C7RD81_ANAPD Length = 255 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 23/30 (76%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYV 44 CPKCG +LV R GK+G F+GCS +P C +V Sbjct: 219 CPKCGGKLVEREGKYGKFIGCSNFPKCRFV 248 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 16/30 (53%), Positives = 22/30 (73%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPEC 90 +CP CG LV R+G++G FIGC N+P+C Sbjct: 216 ANICPKCGGKLVEREGKYGKFIGCSNFPKC 245 >UniRef50_Q9X3X7 DNA topoisomerase 1 n=7 Tax=cellular organisms RepID=TOP1_ZYMMO Length = 1217 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%) Query: 51 ADGHIVKVLEGQVCPAC-GANLVLRQGRFGMFIGCINYPECEHT 93 DGH + + CP+C L L+ GRFG FI C NYPEC++T Sbjct: 589 GDGH-----DPRECPSCHTGRLALKGGRFGAFIACSNYPECKYT 627 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 15 CPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG 53 CP C L ++ G+ G F+ CS YP C Y R DG Sbjct: 597 CPSCHTGRLALKGGRFGAFIACSNYPECKYTRGFGQGEDG 636 >UniRef50_A3EW25 DNA topoisomerase n=3 Tax=Leptospirillum RepID=A3EW25_9BACT Length = 684 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 R K++ +V +EG++C CG L +G+FG F+GC YP C H E Sbjct: 599 RLTKTALALRVVIPVEGKICSECGGVLRRLEGKFGPFLGCSGYPACRHLE 648 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 18/33 (54%), Positives = 21/33 (63%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 C +CG L GK GPFLGCS YPAC ++ L Sbjct: 618 CSECGGVLRRLEGKFGPFLGCSGYPACRHLEKL 650 >UniRef50_B5TTQ4 TraB n=3 Tax=environmental samples RepID=B5TTQ4_9BACT Length = 750 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 10/119 (8%) Query: 64 CPACGANLV-LRQGRFGMFIGCINYPECEHTELIDK--PDETAI-TCPQCRTGHLVQRRS 119 CP C + L + + F + +C+H+ DK P E I +CP+C+TG L + ++ Sbjct: 567 CPKCKSQLKKFKNTKTNQFFWICSNEDCKHSMNDDKGKPVEKVIHSCPKCKTGRLNKFQN 626 Query: 120 RYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHFCASKQ 172 K F EC+ +++ K I CP+C PL KK + FC +++ Sbjct: 627 SQTKEFFWICNDQECKHSMDDKKGQPVEKIKYPCPKCSTPLFRSKKEGKDPIWFCPNRE 685 >UniRef50_B3PMD8 DNA topoisomerase I n=3 Tax=Mycoplasma RepID=B3PMD8_MYCA5 Length = 620 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 6/42 (14%) Query: 14 SCPKCGAELVIR--SGKHGPFLGCSQYPACDYVRPLKSSADG 53 SCP+CG+ L+ R S KH F+GCS +PAC Y +ADG Sbjct: 563 SCPRCGSTLLYRNNSKKHTKFIGCSNFPACRY----SENADG 600 >UniRef50_UPI00016C5644 hypothetical protein GobsU_04089 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5644 Length = 923 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Query: 64 CPAC-GANLVLRQGRF-GMFIGCIN--YPECEHTELIDKPD---ETAITCPQCRTGHLVQ 116 CP C +LVLRQ R G F+ C+N EC H + + D + + +C GH + Sbjct: 834 CPECPNGDLVLRQSRGEGWFLVCVNPQVRECSHRKRLSLEDARLKVRLQGMRCPAGHPLT 893 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAG 145 RS F C+ YP C FA + G Sbjct: 894 ARSSGHGFFLGCENYPRCDFAQGLSILEG 922 >UniRef50_C3QAX1 NERD domain-containing protein n=6 Tax=Bacteroides RepID=C3QAX1_9BACE Length = 246 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 27/37 (72%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 +++ VCP CG +L+LR+G++G F GC N+P C+ T Sbjct: 207 RLINQGVCPQCGGHLILRKGKYGTFYGCSNFPTCKFT 243 Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 22/33 (66%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDY 43 N CP+CG L++R GK+G F GCS +P C + Sbjct: 210 NQGVCPQCGGHLILRKGKYGTFYGCSNFPTCKF 242 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CPQC GHL+ R+ +YG TF+ C +P C+F IN Sbjct: 213 VCPQC-GGHLILRKGKYG-TFYGCSNFPTCKFTIN 245 >UniRef50_C6WSV7 DNA topoisomerase n=4 Tax=Proteobacteria RepID=C6WSV7_METML Length = 864 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACG 68 +E+CPKCG L + + G F+GC+ Y P CDY R + +A+ V G V A Sbjct: 584 DEACPKCGKPLQKQLSRFGSFIGCTGYNDTPKCDYKRSIDGTANAGTDPVSIG-VDAATS 642 Query: 69 ANLVLRQGRFGMF--IGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 + L G +G + +G E + + + P E A+ T +++ Sbjct: 643 KEIYLMNGPYGPYLQVGMAVEGEKKKPKRVSIPKEIALADVNLETANML 691 >UniRef50_A4JTK7 DNA topoisomerase n=2 Tax=Burkholderiales RepID=A4JTK7_BURVG Length = 893 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 15/129 (11%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 N CP C + SG +G F C+ C L SA G+ V + Q CP C ++ Sbjct: 736 NPVHCPVCEKLMRRISGANGHFWSCTDRENCKTT--LDDSA-GNPVPKVAAQPCPKCSSD 792 Query: 71 LVLRQGRFGMFIGCINYPECEHT------ELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 + +G+ G F C + C++T + +PD I CP C G + RR R K Sbjct: 793 MNRVRGKKGYFWSCTDREGCKNTMDDKDGAPVTRPD--PIACPDC--GAQMFRRERRDKK 848 Query: 125 --FHSCDRY 131 F C + Sbjct: 849 GYFWGCSAF 857 >UniRef50_C6BT42 DNA topoisomerase type IA central domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT42_DESAD Length = 720 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 9/86 (10%) Query: 15 CPKCGAE-LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL------EGQVCPAC 67 CPKC L R G G F GCS YP C+ P K+ K + CP C Sbjct: 621 CPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEHKCPDC 680 Query: 68 GANLVLRQG-RFGMF-IGCINYPECE 91 G L+ R R G+F C +PEC+ Sbjct: 681 GKGLIRRPAKRKGLFWWSCSGFPECK 706 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 14/87 (16%) Query: 64 CPACGANLVL-RQGRFGMFIGCINYPECEHT--ELIDKPDETAIT-----------CPQC 109 CP C + R+G G F GC YP+C T KPD A CP C Sbjct: 621 CPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEHKCPDC 680 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQF 136 G + + R G + SC +PEC+F Sbjct: 681 GKGLIRRPAKRKGLFWWSCSGFPECKF 707 >UniRef50_UPI0001C41D8C DNA topoisomerase I TopA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D8C Length = 741 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 39/120 (32%) Query: 18 CGAELVIRSGKH--GPFLGCSQYPACDYVRPL----------------------KSSADG 53 CG +L+ R F+GCS +P C L K+S G Sbjct: 593 CGGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKKTCPTCGLPMISIKKASGKG 652 Query: 54 HIVKVLEGQV---------------CPACGANLVLRQGRFGMFIGCINYPECEHTELIDK 98 L+ CP CG +L+ R GR+G F+GC +P C T +D+ Sbjct: 653 RDHVCLDSNCGKDVSRRQAPEVVGKCPECGKDLLKRSGRYGEFVGCSGFPRCRFTCSVDE 712 Score = 45.4 bits (106), Expect = 9e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 112 GHLVQRRS-RYGKTFHSCDRYPECQFAINFKPIAG----ECPECHYPLL-IEKKTAQGVK 165 G L++R S R TF C +P+C+ + A CP C P++ I+K + +G Sbjct: 595 GKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKKTCPTCGLPMISIKKASGKGRD 654 Query: 166 HFCASKQCGKPVS 178 H C CGK VS Sbjct: 655 HVCLDSNCGKDVS 667 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 15/29 (51%), Positives = 23/29 (79%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDY 43 CP+CG +L+ RSG++G F+GCS +P C + Sbjct: 678 CPECGKDLLKRSGRYGEFVGCSGFPRCRF 706 >UniRef50_C4LDL2 UvrD/REP helicase n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LDL2_TOLAT Length = 1013 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 10/77 (12%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 DK + CP C +G L+ + S YG+ F+ C P C N C +C PLL Sbjct: 885 DKAEIGLWNCPSCESGWLLAKNSHYGRKFYICSLSPACNHTTN------SCKQCGSPLLN 938 Query: 157 EKKTAQGVKHFCASKQC 173 + V CA+ C Sbjct: 939 HPE----VLRICANDAC 951 Score = 45.4 bits (106), Expect = 9e-04, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 31/120 (25%) Query: 14 SCPKCGAELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +CP C + ++ H F CS PAC++ C CG+ L Sbjct: 893 NCPSCESGWLLAKNSHYGRKFYICSLSPACNHTT----------------NSCKQCGSPL 936 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 +N+PE D + + C +C G +V R+++ G TF+ C+RY Sbjct: 937 -------------LNHPEVLRICANDACQDIEVGCHRCGIGTMVLRKNKNGGTFYGCNRY 983 >UniRef50_A6EQS9 Hypothetical membrane protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6EQS9_9BACT Length = 252 Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 23/34 (67%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 CPKC +L+ +SGK+G F GCS YP C Y +K Sbjct: 219 CPKCENQLIEKSGKYGKFYGCSNYPKCRYTLKIK 252 Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust. Identities = 14/32 (43%), Positives = 22/32 (68%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 ++CP C L+ + G++G F GC NYP+C +T Sbjct: 217 RICPKCENQLIEKSGKYGKFYGCSNYPKCRYT 248 >UniRef50_C5DA42 NERD domain protein n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA42_GEOSW Length = 262 Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CPKCG L++R GK+G F GC+ YP C + + + Sbjct: 229 CPKCGGVLIVRKGKYGTFKGCNNYPKCKFTQSI 261 Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 25/33 (75%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 CP CG L++R+G++G F GC NYP+C+ T+ I Sbjct: 229 CPKCGGVLIVRKGKYGTFKGCNNYPKCKFTQSI 261 >UniRef50_A3D9J8 UvrD/REP helicase n=11 Tax=Gammaproteobacteria RepID=A3D9J8_SHEB5 Length = 1004 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 30/104 (28%) Query: 15 CPKCGAELVI-RSGKHGPFLGCSQYPACDY--------VRPLK-----------SSADGH 54 C +C ++ R+G F CS +P CD+ P+ + A GH Sbjct: 888 CVRCSTGMLKPRTGNFKSFYSCSHFPLCDHKEQGCELCASPMTRNHFAGFKVCLNEACGH 947 Query: 55 IVKVLEGQVCPACGANLVLRQGRFGMFIGCINY-----PECEHT 93 I +C CG ++ L+ GRFG F C NY P C +T Sbjct: 948 I-----SPLCNLCGGDMQLKDGRFGPFWACRNYRGQNLPSCTNT 986 >UniRef50_A8II62 DNA topoisomerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8II62_CHLRE Length = 772 Score = 45.8 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 14/86 (16%) Query: 10 RNNESCPKCG-AELVIRSGKHGPFLGCSQYP----ACDYVRPLKSS--ADG------HIV 56 R+ CPKCG LV++ ++G F+GCS + CD+ RPL S ADG + Sbjct: 621 RDPRRCPKCGVGRLVLKPSRYGGFIGCSNFADEALQCDFARPLLPSEGADGGSCVPFNAT 680 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFI 82 + L G P G + +R G +G+++ Sbjct: 681 ERLLGS-HPDTGQPVYVRLGPYGLYV 705 >UniRef50_Q12Y06 DNA topoisomerase n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12Y06_METBU Length = 780 Score = 45.8 bits (107), Expect = 7e-04, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 18/167 (10%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 C +C L I S G F+GC+ YP C PL + + V + C GA ++ Sbjct: 611 CNECERVLRIVSTDKGRFVGCTGYPQCKNTFPLPKTG---ALAVQRSRTCKKGGAAVLKV 667 Query: 75 QGRFGMFIG------CINYPECEHTELIDKPDETAITCPQC--RTGHLVQRRSRYGKTFH 126 ++ +G C EC P E CP C +T + + SR+ Sbjct: 668 GSKYFWAVGIGPCFSCDMEKEC-------YPPEIVGECPACDGQTFLITTKDSRFLGCTK 720 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C C C + LL K+ + K +CA+++C Sbjct: 721 RCGHTQSVPKNGRLTITDKVCEGCGWRLLRVKEQGKDAKEYCANRKC 767 >UniRef50_D2R6E6 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R6E6_9PLAN Length = 255 Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 5/45 (11%) Query: 8 TVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPL 47 TV + CPKCGA +V+R+ K+GP FLGCS YP C + L Sbjct: 211 TVSGPQLCPKCGAAMVVRTAKNGPNAGQKFLGCSNYPKCQTMAKL 255 >UniRef50_C5S684 DNA topoisomerase type IA zn finger domain protein (Fragment) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S684_CHRVI Length = 402 Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 17/32 (53%), Positives = 23/32 (71%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 +CP CG+ + +RSG++G F GCSQYP C R Sbjct: 369 TCPYCGSSMRLRSGRYGQFWGCSQYPGCKGTR 400 Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 21/31 (67%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHT 93 CP CG+++ LR GR+G F GC YP C+ T Sbjct: 369 TCPYCGSSMRLRSGRYGQFWGCSQYPGCKGT 399 >UniRef50_UPI00017C3C60 PREDICTED: hypothetical protein n=1 Tax=Bos taurus RepID=UPI00017C3C60 Length = 819 Score = 45.4 bits (106), Expect = 9e-04, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Query: 15 CPKCGAELV--IRSGKHGPFLGCSQYPACDYVRPLK 48 CPKCG + I +G +G FLGCS+YP C Y + LK Sbjct: 782 CPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLK 817 >UniRef50_B9NSL7 UvrD/REP helicase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSL7_9RHOB Length = 971 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 22/76 (28%) Query: 64 CPACGANLVLRQGRFGMFIGCIN----YPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 CP+CG L + G G + C N YP CP+C G LV+R+S Sbjct: 908 CPSCGIGLPEQDGEAGP-MKCRNCGAEYP----------------ACPECENGWLVERKS 950 Query: 120 RYGKTFHSCDRYPECQ 135 RYGK F C +P C+ Sbjct: 951 RYGK-FLGCVSFPRCK 965 >UniRef50_D2RGC8 DNA topoisomerase n=2 Tax=Archaeoglobaceae RepID=D2RGC8_ARCPR Length = 648 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 17/70 (24%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA---------DGHIVKVL----- 59 SCP+CG L+++ F+GCS YP C + RPL + H VK+L Sbjct: 580 SCPECGGVLLVKRANK-RFIGCSNYPKCKFSRPLPQKGRLVTTSKVCEKHGVKILRIVEK 638 Query: 60 --EGQVCPAC 67 + + CP C Sbjct: 639 DRKWEFCPLC 648 >UniRef50_UPI000174264A helicase, UvrD/REP family protein n=2 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174264A Length = 692 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 8/54 (14%) Query: 104 ITCPQCRTGHLVQRR-SRYGKTFHSCDRYPECQFAIN-----FKPIAGECPECH 151 + CP C+TG LV R+ S+ GK F C YP C + N KPI CP C Sbjct: 631 VNCPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYNNIEILSKPIL--CPACQ 682 >UniRef50_A1VWJ4 UvrD/REP helicase n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWJ4_POLNA Length = 914 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Query: 62 QVCPACGANLVL-RQGRFGMFIGCINYPECEHTELIDK 98 ++C CG V+ + G++G F+GC NYP C HT I++ Sbjct: 867 ELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIEQ 904 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 8 TVRNNESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSS 50 T +NE C CG V+ ++GK+G FLGCS YP C + R ++ + Sbjct: 862 TESSNELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIEQN 905 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust. Identities = 17/34 (50%), Positives = 24/34 (70%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 VCP CG ++ R GR+G F GC N+P+C +T+ I Sbjct: 186 VCPKCGGEMIRRNGRYGEFWGCGNFPKCRYTQNI 219 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 15/33 (45%), Positives = 23/33 (69%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CPKCG E++ R+G++G F GC +P C Y + + Sbjct: 187 CPKCGGEMIRRNGRYGEFWGCGNFPKCRYTQNI 219 >UniRef50_C5A9D2 DNA topoisomerase n=1 Tax=Burkholderia glumae BGR1 RepID=C5A9D2_BURGB Length = 722 Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Query: 99 PDETAITCPQCRTGHLVQRR----SRYGKTFHSCDRYPECQFAI 138 PD A CP+C+ G+LV R + G+TFH C+ YPEC+ ++ Sbjct: 677 PD-GAKKCPKCKKGYLVPRTVKNGPKAGQTFHGCNNYPECKHSV 719 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 + + G K E ++CP CG L R GRFG F GC +P+C +T+ + Sbjct: 177 MAKESGGTSAKQTEEKICPRCGLALKKRNGRFGGFWGCTGFPDCRYTKNV 226 >UniRef50_Q1RIM1 DNA topoisomerase 1 n=35 Tax=Rickettsiales RepID=TOP1_RICBR Length = 800 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 9/82 (10%) Query: 10 RNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKS-----SADGHIVKVL-EGQ 62 ++++ CP C EL ++ GK G FL CS YP C++ + + S ADG ++ E + Sbjct: 595 KDSKVCPSCKTGELSLKLGKFGAFLACSNYPECNFRKSIVSGNDNNEADGEAKDIVNENK 654 Query: 63 VC--PACGANLVLRQGRFGMFI 82 V G + L++G +G +I Sbjct: 655 VLGKDKEGIEIYLKKGPYGPYI 676 Score = 42.7 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Query: 60 EGQVCPACG-ANLVLRQGRFGMFIGCINYPEC 90 + +VCP+C L L+ G+FG F+ C NYPEC Sbjct: 596 DSKVCPSCKTGELSLKLGKFGAFLACSNYPEC 627 >UniRef50_Q04TE1 DNA topoisomerase n=4 Tax=Leptospira RepID=Q04TE1_LEPBJ Length = 613 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%) Query: 91 EHTELIDKPDETAI-TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 E E+ +K ET+ CP CR G L ++++ K F+ C R+P+C++ +N++ Sbjct: 559 EWAEIREKKKETSWGICPLCRDGSLQKKKTSRKKEFYQCSRFPDCEY-VNYE 609 >UniRef50_A8F3N1 DNA topoisomerase n=2 Tax=Thermotogaceae RepID=A8F3N1_THELT Length = 722 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 24/158 (15%) Query: 18 CGAELVIRSGKHGPFLGCS----------QYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 C ++ ++ G++G +L C + PA Y + + H K VCP C Sbjct: 562 CKSKYKLKVGRYGLYLLCENCSKTTSLALETPAVFYENTMYFT---HQEKESIETVCPVC 618 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR-SRYGKTFH 126 G L GR+G +I C N C T CP+C +V+++ S+ + F Sbjct: 619 GGKLEQMSGRYGNYIKCQN---CGKT----YTGFARGKCPKCSA--VVEKKISKNKRIFF 669 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGV 164 C C F +P CPEC L +K ++ V Sbjct: 670 KCTS-DNCDFISWLEPSNETCPECSQRLYYKKYRSKEV 706 >UniRef50_D0GKB0 DNA topoisomerase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GKB0_9FUSO Length = 851 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 22/37 (59%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 E VC CG ++ GRFG F+ C YPEC++ + I Sbjct: 719 EAGVCEKCGRPFEIKMGRFGKFLACTGYPECKNIKAI 755 >UniRef50_Q5ZHE3 DNA topoisimerase n=9 Tax=root RepID=Q5ZHE3_9BACT Length = 737 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 17/103 (16%) Query: 11 NNESCPKCGAEL--VIRSGKHGPFLGCSQYP-----ACDYV--RPLKSSADGHIVKVLEG 61 + CP CG L + + K+ F GC+ + ACD +P+ A KV E Sbjct: 628 DTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAP----KVSEL 683 Query: 62 QVCPACGANLVLRQGR-FGMFI-GCINYPECEHT--ELIDKPD 100 C ACG L R G+ GMF GC N+P C+ T +L +PD Sbjct: 684 HKCMACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPDLKGRPD 726 >UniRef50_Q2B8U1 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8U1_9BACI Length = 1166 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 5/46 (10%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 ++ G+I+KV CP CG LV R+ +G+F GC +P+C + E Sbjct: 1119 ATLSGNILKV-----CPKCGKPLVERKSEYGVFYGCKGFPKCRYIE 1159 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 21/36 (58%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 CPKCG LV R ++G F GC +P C Y+ K + Sbjct: 1129 CPKCGKPLVERKSEYGVFYGCKGFPKCRYIESKKKT 1164 >UniRef50_B0P1A6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P1A6_9CLOT Length = 949 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 12/80 (15%) Query: 64 CPACGANLVLRQGRFG-MFIGCINYPECEHTELI---------DKPDETAITCPQCRTGH 113 CP CG + L++ G FI CI YP C+ TE + ++ T C +C+ Sbjct: 862 CPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCVRCKYS- 920 Query: 114 LVQRRSRYGKTFH-SCDRYP 132 L +SRYG + C YP Sbjct: 921 LTAEKSRYGGGLYIHCCGYP 940 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%) Query: 9 VRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKS-------SADGHIVKVLE 60 +R ++ CPKCG + ++ G F+ C YP C +K+ + +G Sbjct: 856 IRLHKKCPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGT----- 910 Query: 61 GQVCPACGANLVLRQGRF--GMFIGCINYP 88 GQ C C +L + R+ G++I C YP Sbjct: 911 GQKCVRCKYSLTAEKSRYGGGLYIHCCGYP 940 >UniRef50_B2UHD2 DNA topoisomerase type IA zn finger domain protein n=5 Tax=Burkholderiaceae RepID=B2UHD2_RALPJ Length = 323 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%) Query: 55 IVKVLEGQV----CPACGANLVLRQGRFGMFIGCINYPECEH 92 + KV EG CPACG LV R G+ G F GC N+P+C + Sbjct: 272 LAKVFEGDSRTPSCPACGVKLVARNGKSGAFWGCSNFPKCWN 313 Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust. Identities = 17/28 (60%), Positives = 20/28 (71%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPAC 41 SCP CG +LV R+GK G F GCS +P C Sbjct: 284 SCPACGVKLVARNGKSGAFWGCSNFPKC 311 >UniRef50_UPI0001C3753D NERD domain protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3753D Length = 295 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 5/38 (13%) Query: 15 CPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPL 47 CP CGA+L+IR+ K G F GCS YP C Y + + Sbjct: 258 CPNCGAKLIIRTAKRGYNIGHKFYGCSNYPNCKYTKSI 295 Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 6/49 (12%) Query: 54 HIVKVLE-GQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELI 96 HI ++ + ++CP CGA L++R + G F GC NYP C++T+ I Sbjct: 247 HIKRIEQRKRICPNCGAKLIIRTAKRGYNIGHKFYGCSNYPNCKYTKSI 295 >UniRef50_B1L3G6 DNA topoisomerase I n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3G6_KORCO Length = 710 Score = 43.1 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 30/102 (29%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYP-ACDYVRPL--KSSADGHIVK----VLEGQV---- 63 CP+CG +L +R +G F+ CS YP CD L +G + ++ G++ Sbjct: 597 CPECGGDLNMRKSSYGYFIVCSNYPEKCDVKFNLFKNERFEGKFCECGLPLVSGRIKTKS 656 Query: 64 -------------------CPACGANLVLRQGRFGMFIGCIN 86 C CG +V +QG+FG+++ C N Sbjct: 657 NRGRGYTRCIANCDRTPLRCAKCGGPMVAKQGKFGVYLKCEN 698 Score = 40.8 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 23/119 (19%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPE-CEHTELIDKPDETAITCPQCR----TGHLVQRR 118 CP CG +L +R+ +G FI C NYPE C+ + K + +C +G + + Sbjct: 597 CPECGGDLNMRKSSYGYFIVCSNYPEKCDVKFNLFKNERFEGKFCECGLPLVSGRIKTKS 656 Query: 119 SR---YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 +R Y + +CDR P C +C P ++ K+ GV C + CG Sbjct: 657 NRGRGYTRCIANCDRTPL------------RCAKCGGP-MVAKQGKFGVYLKC--ENCG 700 >UniRef50_Q1UZD4 DNA topoisomerase n=4 Tax=Bacteria RepID=Q1UZD4_PELUB Length = 863 Score = 43.1 bits (100), Expect = 0.005, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 12 NESCPKC--GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA--C 67 N C C G+ + S + G F+GCS YP C + RPL + ++ E + Sbjct: 596 NRQCKLCDSGSLSLKNSFRGGAFIGCSNYPDCKFTRPLSKAKAAAQSQLAEPKFIGKHEN 655 Query: 68 GANLVLRQGRFGMFI 82 G ++ L+ GRFG ++ Sbjct: 656 GNDMYLKNGRFGPYL 670 >UniRef50_B0TT01 UvrD/REP helicase n=4 Tax=Shewanella RepID=B0TT01_SHEHH Length = 1013 Score = 43.1 bits (100), Expect = 0.005, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPE-CQFAINFKPIAGECPECHYPLLIEKKTA 161 ++ CPQC+ G L+ R R+G F++C + C I+ C C+ ++ +T Sbjct: 893 SLCCPQCKEGKLIPREGRFG-LFYTCSLGQDYCDTKID------ACSVCNSAPMLRNET- 944 Query: 162 QGVKHFCASKQCGK--PVSAE 180 HFC+S++CG PV E Sbjct: 945 ---HHFCSSEKCGHRLPVCPE 962 >UniRef50_C4ZF87 DNA topoisomerase I n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZF87_EUBR3 Length = 461 Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 22/36 (61%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK 98 +CP CG L L QG FG F+GC NYP C+ + K Sbjct: 425 ICPECGGRLRLIQGPFGKFMGCENYPTCKFNRRVRK 460 >UniRef50_Q46AN3 DNA topoisomerase n=3 Tax=Methanosarcina RepID=Q46AN3_METBF Length = 855 Score = 42.7 bits (99), Expect = 0.006, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 18/121 (14%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE-TAITCPQCRTG--HLVQRRSR 120 C ACG L + Q G F+GC YP+C ++ + K T + +C+ G +++ ++ Sbjct: 631 CKACGHVLRIVQTDSGRFVGCTGYPDCRNSYPLPKAGALTVLRSKECKKGGVAVLKVGNK 690 Query: 121 Y------GKTFHSCDRYPECQFAINFKP-IAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 Y G F +CD EC + P G CPEC + + + + +K+C Sbjct: 691 YNWAVGIGPCF-TCDLEKEC-----YPPETVGPCPECDGSMFL--INFKDTRFLGCTKRC 742 Query: 174 G 174 G Sbjct: 743 G 743 Score = 40.4 bits (93), Expect = 0.026, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 6/162 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 +C CG L I G F+GC+ YP C PL + + VL + C G ++ Sbjct: 630 TCKACGHVLRIVQTDSGRFVGCTGYPDCRNSYPLPKAG---ALTVLRSKECKKGGVAVLK 686 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ--RRSRYGKTFHSCDRY 131 ++ +G C+ E P ET CP+C + + +R+ C Sbjct: 687 VGNKYNWAVGIGPCFTCD-LEKECYPPETVGPCPECDGSMFLINFKDTRFLGCTKRCGYT 745 Query: 132 PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 + C C + L K + + FC +++C Sbjct: 746 HSVPKTGKLTILDKTCETCGWKLFRLKDGDRPEEEFCINRRC 787 >UniRef50_Q28MI5 DNA topoisomerase n=13 Tax=Rhodobacterales RepID=Q28MI5_JANSC Length = 907 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 19/37 (51%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 CP C G L R +R G F C YPEC++ F P Sbjct: 632 CPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGP 668 Score = 42.0 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 62 QVCPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETA 103 ++CP CG L +R R G FIGC YPEC +T PD A Sbjct: 630 RLCPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGPPDPEA 673 >UniRef50_D2MH56 Helicase IV n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MH56_9BACT Length = 893 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%) Query: 43 YVRPLKSSADGHIV--------KVLEGQVCPACGAN-LVLRQGRFGMFIGCINYPECEHT 93 +++ + S +G ++ K +CP C L R+G FG+F+GC YP C HT Sbjct: 823 FIKEIIDSGNGSVILERTDAQGKTCPYHLCPKCETGFLTERRGPFGLFMGCSTYPLCSHT 882 Query: 94 E 94 + Sbjct: 883 Q 883 >UniRef50_C4XEP1 DNA topoisomerase n=2 Tax=Mycoplasma RepID=C4XEP1_MYCFE Length = 629 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%) Query: 12 NESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLK 48 NE CP G EL++R+ K F+GC+ +P C Y R ++ Sbjct: 574 NEKCPDDGGELIVRNNKRNDTKFVGCANFPKCHYARSVE 612 >UniRef50_A4RYV6 DNA topoisomerase (Fragment) n=5 Tax=cellular organisms RepID=A4RYV6_OSTLU Length = 840 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 19/93 (20%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPL--------KSSADGHIVKVL 59 V CP C L ++ K G F+GCS+YP C + PL + D V + Sbjct: 677 VSEARRCPSCKIGRLGLKPSKAGGFIGCSRYPECGFTHPLHPIRGAIVSDTDDPDFVATV 736 Query: 60 EGQ----------VCPACGANLVLRQGRFGMFI 82 E V PA G + LR G +G ++ Sbjct: 737 EDPDAVMYPKVLGVDPATGKEISLRLGPYGPYL 769 >UniRef50_B5EPF0 DNA topoisomerase type IA zn finger domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPF0_ACIF5 Length = 739 Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 5/39 (12%) Query: 14 SCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPL 47 +CP+CG+ +V R+ + G PF GCS+YP+C RP+ Sbjct: 701 TCPQCGSRMVRRTARRGSRAGRPFWGCSRYPSCTGTRPI 739 >UniRef50_A5FHK0 DNA topoisomerase III n=25 Tax=cellular organisms RepID=A5FHK0_FLAJ1 Length = 768 Score = 42.4 bits (98), Expect = 0.008, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 28/147 (19%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQ----VCPAC 67 E+CPKC I+ GK GCS+Y + CD+V P H K+ E Q V Sbjct: 612 ETCPKCQKGNFIK-GKSA--FGCSEYKSGCDFVLPYGF----HDKKITESQYLRLVQKGS 664 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTEL----------IDKPDETAITCPQCRTGHLVQR 117 N+ + G G I + E +L + +++CP+C+ G++++ Sbjct: 665 TVNIKGFKTDAGTVEGLIRFEENYKLKLEPKKTYIKKTTKETASDSLSCPKCKKGNILK- 723 Query: 118 RSRYGKTFHSCDRYPE-CQFAINFKPI 143 GKT + C Y C F + F + Sbjct: 724 ----GKTAYGCSEYKSGCDFKVTFDEV 746 >UniRef50_B9TJX8 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJX8_RICCO Length = 290 Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L + ++G F+GC+ Y P CDY R L A+ V+ GQ ++ Sbjct: 2 CPKCGRQLQKQLSRYGSFIGCTGYNATPKCDYKRNLDGEANAASEPVVIGQDV-DTQKDI 60 Query: 72 VLRQGRFGMFIGCINYPECEHT--ELIDKPDETAITCPQCRTGHLV 115 L G +G ++ E + + + P E ++ T H++ Sbjct: 61 YLMNGPYGPYLQVGQPVEGDKKKPKRVSIPKEIPLSQINIDTAHML 106 >UniRef50_Q58078 Uncharacterized protein MJ0664 n=4 Tax=Methanocaldococcus RepID=Y664_METJA Length = 301 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 ++ +CP CGA+L + K G FLGC+ YP C Y R Sbjct: 262 DDNTCPWCGAKLRVVRTKKGEFLGCTNYPNCLYRR 296 >UniRef50_B8L506 UvrD/REP helicase n=2 Tax=Bacteria RepID=B8L506_9GAMM Length = 924 Score = 42.0 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Query: 9 VRNNESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRP 46 V N E CP C + + R+G HGPF CS YP C + RP Sbjct: 881 VINEERCPVCKVGVFVERNGPHGPFRSCSSYPLC-HNRP 918 >UniRef50_A1WZY5 DNA topoisomerase III n=6 Tax=Campylobacter RepID=A1WZY5_CAMJJ Length = 730 Score = 42.0 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR--------YPECQFAINFKP--- 142 +++D ++ I CPQC G L +R+ +YG F C YP+ + NF+ Sbjct: 618 KILDNENKPKIQCPQCNKGFLTKRKGKYG-NFWGCSEFKQGCKAIYPDNKGTPNFETKQA 676 Query: 143 ---IAGECPECHYPLLIEKKTAQG 163 +CP+C+ L K+ G Sbjct: 677 SNDTTHKCPQCNKGFLQRIKSKNG 700 >UniRef50_A2RKZ6 LtrE protein n=3 Tax=Lactococcus lactis RepID=A2RKZ6_LACLM Length = 216 Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK 98 +VCP C + L LR+G++G F GC N+P+C T D+ Sbjct: 6 EVCPRCHSRLTLREGKYGKFWGCKNFPKCVGTLPYDR 42 Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 19/29 (65%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPAC 41 E CP+C + L +R GK+G F GC +P C Sbjct: 6 EVCPRCHSRLTLREGKYGKFWGCKNFPKC 34 >UniRef50_UPI000179C790 UPI000179C790 related cluster n=3 Tax=Bos taurus RepID=UPI000179C790 Length = 710 Score = 42.0 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 2/31 (6%) Query: 15 CPKCGAELV--IRSGKHGPFLGCSQYPACDY 43 CPKCG + I +G +G FLGCS+YP C Y Sbjct: 680 CPKCGQGRLRKITNGPYGAFLGCSRYPNCKY 710 >UniRef50_B1VJ64 DNA topoisomerase n=9 Tax=Gammaproteobacteria RepID=B1VJ64_PROMH Length = 772 Score = 42.0 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 11 NNESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV------ 63 N CP C +I R G++G F GCS YP C P K+ + EG V Sbjct: 631 NGTPCPVCQKGFLIKRKGQNGFFWGCSCYPECKTAFPDKNGQPVTEKQPNEGAVARLNVM 690 Query: 64 CPACGANLVLR-QGRF 78 CP+C +++R +G F Sbjct: 691 CPSCSNEIIIRPKGYF 706 Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 17/83 (20%) Query: 43 YVRPLKSSADGHIVKVL-EGQVCPACGAN-LVLRQGRFGMFIGCINYPECEHTELIDK-- 98 Y++ L + D + + + G CP C L+ R+G+ G F GC YPEC+ T DK Sbjct: 613 YIKELIAELDANGINITANGTPCPVCQKGFLIKRKGQNGFFWGCSCYPECK-TAFPDKNG 671 Query: 99 -------PDETAIT-----CPQC 109 P+E A+ CP C Sbjct: 672 QPVTEKQPNEGAVARLNVMCPSC 694 >UniRef50_A6DJX4 DNA topoisomerase n=2 Tax=Bacteria RepID=A6DJX4_9BACT Length = 897 Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 14/32 (43%), Positives = 20/32 (62%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPAC 41 + + CPKC + +V + GK GPF CS +P C Sbjct: 852 KTDVKCPKCDSPIVKKVGKRGPFYACSGFPKC 883 >UniRef50_C7DGU7 Ribonucleoside-diphosphate reductase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGU7_9EURY Length = 762 Score = 41.6 bits (96), Expect = 0.012, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 7/51 (13%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 V +KSSA G++++V + Q CP CG+N++ + GC P+C +++ Sbjct: 717 VSQIKSSAGGYVMEVQQAQQCPECGSNMIAAE-------GCYTCPKCGYSK 760 >UniRef50_C7NA27 DNA topoisomerase n=20 Tax=Fusobacteriaceae RepID=C7NA27_LEPBD Length = 800 Score = 41.6 bits (96), Expect = 0.013, Method: Composition-based stats. Identities = 15/32 (46%), Positives = 19/32 (59%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECE 91 E VC CG ++ GRFG F+ C YPEC+ Sbjct: 706 EAGVCEFCGKPYEIKTGRFGKFLACTGYPECK 737 >UniRef50_Q5UEY8 Putative uncharacterized protein n=2 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UEY8_9PROT Length = 234 Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 14/59 (23%) Query: 15 CPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPL---------KSSADGHIVKVL 59 CP+CG+ LV R+ K+G FLGC YP C + R L SS G I+K++ Sbjct: 157 CPRCGSNLVERTVKNGANAGSQFLGCEDYPKCRFTRDLPPVESGVRNGSSVGGFILKII 215 >UniRef50_B6YTB3 DNA topoisomerase n=4 Tax=Thermococcus RepID=B6YTB3_THEON Length = 717 Score = 41.6 bits (96), Expect = 0.013, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 6/37 (16%) Query: 15 CPKCGAELVIR----SGKHGPFLGCSQYPACDYVRPL 47 CPKCG +LV+R +GK F+GCS +P C+ PL Sbjct: 638 CPKCGGDLVVRYNRKTGKR--FVGCSNWPKCNVTYPL 672 >UniRef50_A1TJM5 DNA topoisomerase n=55 Tax=Proteobacteria RepID=A1TJM5_ACIAC Length = 680 Score = 41.2 bits (95), Expect = 0.015, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 24/45 (53%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 ++V G CP CGA R G+ G F C YP+C+ T ID + Sbjct: 619 IRVPAGPPCPLCGAATRKRTGKTGAFWSCSRYPDCKGTVAIDSAE 663 >UniRef50_A4JFS2 DNA topoisomerase III n=4 Tax=Proteobacteria RepID=A4JFS2_BURVG Length = 760 Score = 41.2 bits (95), Expect = 0.016, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%) Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRSRY----GKTFHSCDRYPECQFA 137 E H P CP+C+TG +V R++R GK F C YP C+ A Sbjct: 698 EIGHESSKTAPSAAVKACPECKTGKMVVRQARSGPSAGKPFLGCTNYPRCKHA 750 >UniRef50_Q8L288 DNA restriction n=1 Tax=Proteus vulgaris RepID=Q8L288_PROVU Length = 357 Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 11/96 (11%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFL--GCSQYPACDYVRPLKSSADGHIVKV 58 + S LF+ E K G ++V+ G + G S + K ++DG V Sbjct: 267 IVTSGLFSEDAREFADKVGGKIVLIDGNLLIEIIKGDSNFE--------KQTSDGISSAV 318 Query: 59 -LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 L+ C CG ++LR G F GC N+PEC +T Sbjct: 319 PLDSNSCSICGGTMLLRTGNKKTFWGCSNFPECRNT 354 >UniRef50_B9X9Z1 Restriction endonuclease n=1 Tax=bacterium Ellin514 RepID=B9X9Z1_9BACT Length = 284 Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 5/35 (14%) Query: 15 CPKCGAELVIRSGKHG-----PFLGCSQYPACDYV 44 CPKC AE+V+R+ + G F GCSQ+P C Y+ Sbjct: 245 CPKCEAEMVLRTAQKGCNTGGTFWGCSQFPRCRYI 279 >UniRef50_C4V616 DNA topoisomerase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V616_9FIRM Length = 711 Score = 41.2 bits (95), Expect = 0.018, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Query: 2 AKSALFTVRNNESCPKCGAELVI-RSGKHGPFLGCSQYPAC 41 A++A T CP CG +++ R GKHG F GCS +P C Sbjct: 613 ARTAQITGGEGIPCPACGRGVMLKRKGKHGDFWGCSAFPQC 653 >UniRef50_C0QM75 Multiple domain fusion protein (Zn-finger domain associated with topoisomerase type I/adhesin of Type V secretory pathway) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM75_DESAH Length = 502 Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 11/82 (13%) Query: 94 ELIDKPD----------ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI 143 +L+D+ D E A+ CP C G +V + KT+++C C+F KP Sbjct: 378 DLVDEADLASRIAAFEAELAMPCPICLDGKIVSETTSKNKTYYTCSNRA-CRFVSWEKPY 436 Query: 144 AGECPECHYPLLIEKKTAQGVK 165 ECP C P L E T G K Sbjct: 437 HFECPLCKNPFLTEFTTPSGDK 458 >UniRef50_A5CF60 DNA topoisomerase n=2 Tax=Orientia tsutsugamushi RepID=A5CF60_ORITB Length = 788 Score = 40.8 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 16/111 (14%) Query: 6 LFTVRNNES----CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 LF V+N E+ C C +L ++ K+G FL C+ YP+C++ R + ++ + + + + Sbjct: 585 LFPVQNGETDHKLCTLCKVGKLSLKLSKYGAFLACNNYPSCNFTRNIAAAFENND-NLPK 643 Query: 61 GQVCPACG------ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 G+ A G + L++G FG +I + T DKP I+ Sbjct: 644 GKNNKAIGYSDDMQKTIYLKEGPFGWYIQAGE----DSTNKNDKPKRVPIS 690 >UniRef50_C2XKX2 DNA topoisomerase n=7 Tax=Bacillus cereus group RepID=C2XKX2_BACCE Length = 894 Score = 40.8 bits (94), Expect = 0.021, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 55/147 (37%), Gaps = 47/147 (31%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP CG +++ GK F GCS +P C P K ++ + PA + Sbjct: 629 CP-CGNGIILDRGK---FFGCSNHPNCSIGLP----------KKIKDKTIPAVQVKKLFE 674 Query: 75 QGR-------------FGMFIGCIN------YPECEHTELIDKPDETAITCPQCRTGHLV 115 + + F ++ IN P E L CP+C+ GH++ Sbjct: 675 ENKTDLMKGFKSNGKEFSAYLAFINGEVSFNLPTVEELSLGQ--------CPKCQNGHIL 726 Query: 116 QRRSRYGKTFHSCDRYPE-CQFAINFK 141 +R TF C Y C FAI+ K Sbjct: 727 KR-----DTFFGCSAYQSGCNFAISAK 748 >UniRef50_Q6YRP6 Slr6108 protein n=1 Tax=Synechocystis sp. PCC 6803 RepID=Q6YRP6_SYNY3 Length = 269 Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Query: 15 CPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPLKSSAD 52 CPKCG +V+R K GP F GCS YP C + +K++ + Sbjct: 210 CPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKTAEE 252 >UniRef50_C1ZHH2 Nuclease-related protein/topoisomerase C4 zinc finger-containing protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHH2_PLALI Length = 228 Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 5/38 (13%) Query: 15 CPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPL 47 CPKCG +L+ R + GP FLGC YP C + R L Sbjct: 187 CPKCGNDLIERQSQRGPNAGNTFLGCKSYPRCRFTRQL 224 >UniRef50_C5A9C5 UvrD/REP helicase n=2 Tax=Proteobacteria RepID=C5A9C5_BURGB Length = 945 Score = 40.8 bits (94), Expect = 0.023, Method: Composition-based stats. Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLK 48 V E CP C LV+R+G +G F CS +PAC Y +P K Sbjct: 876 VVQEEECPSCRRGVLVLRNGPYGEFRSCSNFPACKY-KPKK 915 >UniRef50_O58356 DNA topoisomerase 1 n=2 Tax=Pyrococcus RepID=TOP1_PYRHO Length = 686 Score = 40.8 bits (94), Expect = 0.023, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Query: 15 CPKCGAELVIRSGKH--GPFLGCSQYPACDYVRPL 47 CPKCG +L+++ K F+GCS +P CD P+ Sbjct: 606 CPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPI 640 >UniRef50_A8S9Z2 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9Z2_9FIRM Length = 273 Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFAIN 139 I KPD T I CPQC G LV R +R G KTF C YP+C F N Sbjct: 227 IIKPDGTWI-CPQC-GGRLVPRVARQGSGAGKTFWGCSNYPKCHFIYN 272 >UniRef50_B0SF59 DNA topoisomerase n=3 Tax=Leptospira biflexa RepID=B0SF59_LEPBA Length = 625 Score = 40.0 bits (92), Expect = 0.033, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 20/32 (62%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 TCP+C G++ + + GKT + C RYP C + Sbjct: 589 TCPKCLDGYVKTKLGKNGKTIYFCSRYPHCDY 620 >UniRef50_B9XT21 Restriction endonuclease n=1 Tax=bacterium Ellin514 RepID=B9XT21_9BACT Length = 263 Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%) Query: 15 CPKCGAELVIRSGKHGP-----FLGCSQYPACDYV 44 CPKC +E+V+R+ GP F GCS YP C Y+ Sbjct: 225 CPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYI 259 >UniRef50_A3X5L1 Helicase IV n=1 Tax=Roseobacter sp. MED193 RepID=A3X5L1_9RHOB Length = 951 Score = 40.0 bits (92), Expect = 0.038, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 40/98 (40%), Gaps = 29/98 (29%) Query: 15 CPKCGAELVIRSGKHGPF-------LGCSQY-PACDYVR---PLKSSADGHIVKVLEGQV 63 C +CG L+ + G L C Y PAC P S A G +LE Sbjct: 826 CSECGGRLLPVPARDGRVWYRCEHNLMCRNYMPACSQCGIGIPTVSGASG----ILE--- 878 Query: 64 CPACGAN-----------LVLRQGRFGMFIGCINYPEC 90 C CGA+ LV R G +G F GCI YP+C Sbjct: 879 CSHCGASHHECPKCSDGWLVERHGPYGDFFGCIRYPDC 916 Score = 38.9 bits (89), Expect = 0.086, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 14/80 (17%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 C CG + G G+ EC H + CP+C G LV+R YG Sbjct: 860 CSQCGIGIPTVSGASGIL-------ECSHC------GASHHECPKCSDGWLVERHGPYGD 906 Query: 124 TFHSCDRYPECQFAINFKPI 143 F C RYP+C N + Sbjct: 907 -FFGCIRYPDCTGKANVSEV 925 >UniRef50_C4ZL79 Restriction endonuclease n=4 Tax=Rhodocyclaceae RepID=C4ZL79_THASP Length = 317 Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust. Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA 51 +CP CG ++ R G HG F GC ++P C ++ SA Sbjct: 276 TTPTCPSCGVKMAARDGTHGRFWGCVRFPKCRATLQMRGSA 316 >UniRef50_A5G3C3 DNA topoisomerase, type IA, zn finger domain protein n=11 Tax=Bacteria RepID=A5G3C3_GEOUR Length = 260 Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust. Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Query: 60 EGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHT 93 E ++CPACG +VLR R G F GC YPEC+ T Sbjct: 217 EKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTT 255 >UniRef50_B4S2M3 Putative transmembrane protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S2M3_ALTMD Length = 252 Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 5/35 (14%) Query: 14 SCPKCGAELVIRSGKHGP-----FLGCSQYPACDY 43 +CP+CG++LV R K G FLGCS +P C Y Sbjct: 216 TCPRCGSDLVERQAKRGAHAGNTFLGCSAFPKCRY 250 >UniRef50_C0GTU6 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GTU6_9DELT Length = 52 Score = 38.9 bits (89), Expect = 0.081, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPAC 41 ++A+ +N+ +CP CG+E+V+R K G F GCS+YP C Sbjct: 2 QAAVREKQNSIACPMCGSEMVLRRSKKGGDQNTQFWGCSRYPRC 45 >UniRef50_B6KRJ5 DNA topoisomerase n=3 Tax=Toxoplasma gondii RepID=B6KRJ5_TOXGO Length = 1832 Score = 38.9 bits (89), Expect = 0.083, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query: 63 VCPACGAN-LVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 +CP+CG L LR G+F+GC YP C +T+ + P + A Sbjct: 1772 LCPSCGEGVLKLRIHSRGIFVGCSAYPRCTYTQSVPPPQKRA 1813 >UniRef50_C2U731 5-methylcytosine-specific restriction enzyme MRR n=16 Tax=Bacillus RepID=C2U731_BACCE Length = 214 Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Query: 15 CPKCGAELVIR-SGKHG-PFLGCSQYPACDYVRPLKS 49 CP C +LVIR S K G F GCSQYP C + P+ + Sbjct: 178 CPTCKHDLVIRNSNKTGNKFFGCSQYPTCTHTEPINT 214 >UniRef50_B0G7K1 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G7K1_9FIRM Length = 365 Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 5/35 (14%) Query: 15 CPKCGAELVIRSGKHGP-----FLGCSQYPACDYV 44 CP CG ELV+R+ + G F GCS +P C Y+ Sbjct: 314 CPVCGGELVLRTARRGANTGKQFYGCSSFPRCRYI 348 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3A7H8 DNA topoisomerase n=13 Tax=Bacteria RepID=Q3A7H8... 234 1e-60 UniRef50_B5EJ79 DNA topoisomerase n=61 Tax=Proteobacteria RepID=... 226 3e-58 UniRef50_P45771 Uncharacterized protein yrdD n=427 Tax=Gammaprot... 218 7e-56 UniRef50_A0LDV2 DNA topoisomerase I n=7 Tax=Proteobacteria RepID... 217 2e-55 UniRef50_Q01N68 DNA topoisomerase n=7 Tax=Bacteria RepID=Q01N68_... 213 3e-54 UniRef50_Q2LT40 DNA topoisomerase n=2 Tax=Bacteria RepID=Q2LT40_... 204 1e-51 UniRef50_A8ZW15 DNA topoisomerase n=3 Tax=Desulfobacteraceae Rep... 199 2e-50 UniRef50_Q1ILA9 DNA topoisomerase n=9 Tax=Bacteria RepID=Q1ILA9_... 199 4e-50 UniRef50_UPI0001698F80 DNA topoisomerase I n=1 Tax=Endoriftia pe... 191 1e-47 UniRef50_D0LR99 DNA topoisomerase n=169 Tax=cellular organisms R... 191 1e-47 UniRef50_C6HWV0 DNA topoisomerase n=1 Tax=Leptospirillum ferrodi... 191 1e-47 UniRef50_B9L7D9 DNA topoisomerase n=1 Tax=Nautilia profundicola ... 189 5e-47 UniRef50_B0VJB5 DNA topoisomerase n=1 Tax=Candidatus Cloacamonas... 188 9e-47 UniRef50_B5YKX8 DNA topoisomerase n=1 Tax=Thermodesulfovibrio ye... 187 1e-46 UniRef50_D1U7W1 DNA topoisomerase n=1 Tax=Desulfovibrio aespoeen... 187 1e-46 UniRef50_A6DDI1 DNA topoisomerase n=1 Tax=Caminibacter mediatlan... 184 1e-45 UniRef50_C1F6V0 DNA topoisomerase n=1 Tax=Acidobacterium capsula... 184 2e-45 UniRef50_A3EPL6 DNA topoisomerase n=2 Tax=Leptospirillum sp. Gro... 183 3e-45 UniRef50_Q9ZMV7 DNA topoisomerase 1 n=47 Tax=Epsilonproteobacter... 180 2e-44 UniRef50_C9LM02 DNA topoisomerase n=1 Tax=Dialister invisus DSM ... 179 4e-44 UniRef50_C6BUQ9 DNA topoisomerase n=14 Tax=Desulfovibrionales Re... 178 7e-44 UniRef50_C1XK22 DNA topoisomerase n=1 Tax=Meiothermus ruber DSM ... 176 3e-43 UniRef50_A9FRC6 DNA topoisomerase I n=1 Tax=Sorangium cellulosum... 175 6e-43 UniRef50_Q7NGH1 DNA topoisomerase n=1 Tax=Gloeobacter violaceus ... 175 6e-43 UniRef50_Q7MGL0 DNA topoisomerase I-related protein n=77 Tax=Gam... 175 7e-43 UniRef50_C1ABE5 DNA topoisomerase n=1 Tax=Gemmatimonas aurantiac... 174 2e-42 UniRef50_Q5SM69 DNA topoisomerase n=2 Tax=Thermus thermophilus R... 173 3e-42 UniRef50_A7NJW2 DNA topoisomerase I n=3 Tax=Bacteria RepID=A7NJW... 172 5e-42 UniRef50_C4L7Y8 DNA topoisomerase type IA zn finger domain prote... 168 7e-41 UniRef50_C6ALU6 DNA topoisomerase I n=3 Tax=Pasteurellaceae RepI... 166 4e-40 UniRef50_A1SR33 DNA topoisomerase, type IA, zn finger domain pro... 164 1e-39 UniRef50_P46494 Uncharacterized protein HI0656.1 n=27 Tax=Pasteu... 164 2e-39 UniRef50_A8RBU5 DNA topoisomerase n=9 Tax=Bacteria RepID=A8RBU5_... 163 2e-39 UniRef50_B0BQ81 Conserved DNA topoisomerase I-related protein n=... 162 4e-39 UniRef50_Q15ZX8 DNA topoisomerase, type IA, zn finger n=1 Tax=Ps... 162 5e-39 UniRef50_Q0HPA2 DNA topoisomerase, type IA, zn finger domain pro... 161 1e-38 UniRef50_Q67PC7 DNA topoisomerase n=3 Tax=Bacteria RepID=Q67PC7_... 157 2e-37 UniRef50_Q1PYZ6 DNA topoisomerase n=1 Tax=Candidatus Kuenenia st... 157 2e-37 UniRef50_D1BMP2 DNA topoisomerase n=6 Tax=Firmicutes RepID=D1BMP... 156 3e-37 UniRef50_C9LSJ2 DNA topoisomerase n=3 Tax=Veillonellaceae RepID=... 155 7e-37 UniRef50_D1C7I9 DNA topoisomerase n=8 Tax=Bacteria RepID=D1C7I9_... 152 4e-36 UniRef50_C9RBU3 DNA topoisomerase n=2 Tax=Bacteria RepID=C9RBU3_... 151 9e-36 UniRef50_Q9KA23 DNA topoisomerase 1 n=107 Tax=Bacteria RepID=TOP... 150 2e-35 UniRef50_B0MRI8 DNA topoisomerase n=1 Tax=Eubacterium siraeum DS... 150 2e-35 UniRef50_B2KBN6 DNA topoisomerase n=1 Tax=Elusimicrobium minutum... 149 4e-35 UniRef50_B9L0B0 DNA topoisomerase n=1 Tax=Thermomicrobium roseum... 148 6e-35 UniRef50_Q4L5V2 DNA topoisomerase 1 n=155 Tax=Firmicutes RepID=T... 148 7e-35 UniRef50_C1SMY2 DNA topoisomerase n=1 Tax=Denitrovibrio acetiphi... 146 3e-34 UniRef50_C0QYG0 DNA topoisomerase n=2 Tax=Brachyspira RepID=C0QY... 146 4e-34 UniRef50_Q2FZ32 DNA topoisomerase 1 n=260 Tax=Bacteria RepID=TOP... 144 1e-33 UniRef50_UPI00006DC642 hypothetical protein CdifQ_04001409 n=1 T... 144 1e-33 UniRef50_A5D2W4 DNA topoisomerase n=4 Tax=Clostridiales RepID=A5... 142 5e-33 UniRef50_A3WII4 Zn-finger domain associated with topoisomerase t... 141 1e-32 UniRef50_C0W9S2 DNA topoisomerase n=1 Tax=Acidaminococcus sp. D2... 140 2e-32 UniRef50_D1Y390 DNA topoisomerase n=1 Tax=Pyramidobacter piscole... 139 4e-32 UniRef50_UPI0000E0DBED putative DNA topoisomerase; C4 zinc finge... 139 5e-32 UniRef50_A9BI47 DNA topoisomerase n=3 Tax=Thermotogaceae RepID=A... 139 6e-32 UniRef50_D1B572 DNA topoisomerase n=7 Tax=Campylobacterales RepI... 138 7e-32 UniRef50_B9LRP1 DNA topoisomerase n=4 Tax=Halobacteriaceae RepID... 137 1e-31 UniRef50_Q256J1 DNA topoisomerase I-fused to SWI domain n=18 Tax... 137 2e-31 UniRef50_B1GYR4 DNA topoisomerase n=1 Tax=uncultured Termite gro... 135 4e-31 UniRef50_Q59046 DNA topoisomerase 1 n=9 Tax=Methanococcales RepI... 135 5e-31 UniRef50_C9RG81 DNA topoisomerase I n=2 Tax=Methanocaldococcus R... 135 6e-31 UniRef50_Q5V1P3 DNA topoisomerase I n=1 Tax=Haloarcula marismort... 134 2e-30 UniRef50_UPI00016C444E DNA topoisomerase I n=1 Tax=Gemmata obscu... 131 8e-30 UniRef50_B3EPW7 DNA topoisomerase n=12 Tax=Chlorobiaceae RepID=B... 131 8e-30 UniRef50_A6G953 DNA topoisomerase n=1 Tax=Plesiocystis pacifica ... 130 2e-29 UniRef50_A8SJ74 DNA topoisomerase n=1 Tax=Parvimonas micra ATCC ... 130 3e-29 UniRef50_C1XZ86 Zn-finger domain-containing protein (Topoisomera... 128 8e-29 UniRef50_B5YFC7 DNA topoisomerase n=1 Tax=Dictyoglomus thermophi... 128 1e-28 UniRef50_D1B6D6 DNA topoisomerase I n=3 Tax=Synergistaceae RepID... 123 3e-27 UniRef50_O83409 DNA topoisomerase 1 n=4 Tax=Treponema RepID=TOP1... 123 4e-27 UniRef50_Q12Y06 DNA topoisomerase n=1 Tax=Methanococcoides burto... 120 2e-26 UniRef50_B8E2F6 DNA topoisomerase n=1 Tax=Dictyoglomus turgidum ... 120 2e-26 UniRef50_A4P0V4 Putative uncharacterized protein n=1 Tax=Haemoph... 120 3e-26 UniRef50_C8WG68 DNA topoisomerase type IA central domain protein... 117 2e-25 UniRef50_Q18KP8 DNA topoisomerase n=6 Tax=Halobacteriaceae RepID... 115 1e-24 UniRef50_D2LPU9 DNA topoisomerase I n=3 Tax=Aciduliprofundum boo... 111 1e-23 UniRef50_Q9HM08 DNA topoisomerase 1 n=4 Tax=Thermoplasmatales Re... 109 4e-23 UniRef50_Q9JN65 DNA topoisomerase 1 n=2 Tax=Mycoplasma gallisept... 107 2e-22 UniRef50_A6VXG1 DNA topoisomerase type IA zn finger domain prote... 106 4e-22 UniRef50_A1U3N5 DNA topoisomerase n=6 Tax=Gammaproteobacteria Re... 105 1e-21 UniRef50_C4NUW5 DNA topoisomerase n=12 Tax=Gammaproteobacteria R... 103 4e-21 UniRef50_Q6XZ01 DNA topoisomerase n=2 Tax=Spiroplasma RepID=Q6XZ... 100 2e-20 UniRef50_B5TTQ4 TraB n=3 Tax=environmental samples RepID=B5TTQ4_... 100 4e-20 UniRef50_C4L6T7 UvrD/REP helicase n=1 Tax=Exiguobacterium sp. AT... 99 7e-20 UniRef50_B1AJN1 DNA topoisomerase I n=15 Tax=Ureaplasma RepID=B1... 99 7e-20 UniRef50_A4JTK7 DNA topoisomerase n=2 Tax=Burkholderiales RepID=... 98 1e-19 UniRef50_Q2RKN9 DNA topoisomerase I n=1 Tax=Moorella thermoaceti... 95 1e-18 UniRef50_Q8EVZ3 DNA topoisomerase n=1 Tax=Mycoplasma penetrans R... 94 2e-18 UniRef50_B1VAJ5 DNA topoisomerase n=6 Tax=Acholeplasmataceae Rep... 94 2e-18 UniRef50_P78032 DNA topoisomerase 1 n=2 Tax=Mycoplasma RepID=TOP... 94 3e-18 UniRef50_B7I2H2 DNA topoisomerase n=4 Tax=Proteobacteria RepID=B... 93 3e-18 UniRef50_C9Q4L2 DNA topoisomerase n=1 Tax=Vibrio sp. RC341 RepID... 90 3e-17 UniRef50_O27661 DNA topoisomerase 1 n=4 Tax=Methanobacteriaceae ... 90 3e-17 UniRef50_UPI0001C41D8C DNA topoisomerase I TopA n=1 Tax=Methanob... 89 6e-17 UniRef50_C6P2V7 DNA topoisomerase n=2 Tax=Proteobacteria RepID=C... 88 1e-16 UniRef50_Q2BNY9 Helicase IV n=1 Tax=Neptuniibacter caesariensis ... 86 4e-16 UniRef50_C6BT42 DNA topoisomerase type IA central domain protein... 86 6e-16 UniRef50_D1BLQ5 DNA topoisomerase n=3 Tax=Veillonella RepID=D1BL... 85 1e-15 UniRef50_Q9Z5W4 Topoisomerase n=1 Tax=Pseudomonas aeruginosa Rep... 84 1e-15 UniRef50_D0Z5F5 DNA topoisomerase n=1 Tax=Photobacterium damsela... 84 2e-15 UniRef50_A0LAP8 DNA topoisomerase n=13 Tax=cellular organisms Re... 84 2e-15 UniRef50_O28469 DNA topoisomerase 1 n=8 Tax=Euryarchaeota RepID=... 83 4e-15 UniRef50_Q3SMS7 DNA topoisomerase n=8 Tax=Proteobacteria RepID=Q... 82 7e-15 UniRef50_C4LDL2 UvrD/REP helicase n=1 Tax=Tolumonas auensis DSM ... 82 7e-15 UniRef50_A7ZI15 Helicase, UvrD family n=1 Tax=Escherichia coli E... 82 8e-15 UniRef50_A4WTK0 UvrD/REP helicase n=8 Tax=Rhodobacterales RepID=... 82 8e-15 UniRef50_C6WSV7 DNA topoisomerase n=4 Tax=Proteobacteria RepID=C... 82 1e-14 UniRef50_C6AVQ0 UvrD/REP helicase n=2 Tax=Alphaproteobacteria Re... 81 2e-14 UniRef50_B1M0P4 DNA topoisomerase n=14 Tax=Alphaproteobacteria R... 80 3e-14 UniRef50_A3D9J8 UvrD/REP helicase n=11 Tax=Gammaproteobacteria R... 79 9e-14 UniRef50_B9NSL7 UvrD/REP helicase n=1 Tax=Rhodobacteraceae bacte... 79 9e-14 UniRef50_C9RSM0 DNA topoisomerase n=49 Tax=Bacilli RepID=C9RSM0_... 78 1e-13 UniRef50_B8EMQ0 DNA topoisomerase n=153 Tax=Alphaproteobacteria ... 77 3e-13 UniRef50_D0D7V2 DNA topoisomerase n=1 Tax=Citreicella sp. SE45 R... 77 3e-13 UniRef50_UPI0001BCB37F UvrD/REP helicase n=1 Tax=Fusobacterium p... 74 2e-12 UniRef50_Q39UP7 DNA topoisomerase I:Restriction endonuclease n=3... 74 2e-12 UniRef50_Q9KRB2 DNA topoisomerase 1 n=401 Tax=cellular organisms... 73 3e-12 UniRef50_C6A350 DNA topoisomerase I n=3 Tax=Euryarchaeota RepID=... 72 8e-12 UniRef50_C1E9E3 DNA topoisomerase n=1 Tax=Micromonas sp. RCC299 ... 72 1e-11 UniRef50_B6RA74 DNA topoisomerase n=6 Tax=Alphaproteobacteria Re... 71 1e-11 UniRef50_UPI00016C5644 hypothetical protein GobsU_04089 n=1 Tax=... 71 2e-11 UniRef50_Q1RIM1 DNA topoisomerase 1 n=35 Tax=Rickettsiales RepID... 71 2e-11 UniRef50_A7IJK3 DNA topoisomerase type IA zn finger domain prote... 68 2e-10 UniRef50_D2J7M2 Putative uncharacterized protein n=2 Tax=Staphyl... 68 2e-10 UniRef50_D2EGP7 DNA topoisomerase n=1 Tax=Candidatus Parvarchaeu... 67 2e-10 UniRef50_A7VHI2 Putative uncharacterized protein n=1 Tax=Clostri... 67 2e-10 UniRef50_C3QAX1 NERD domain-containing protein n=6 Tax=Bacteroid... 67 2e-10 UniRef50_A5UN47 Helicase, UvrD/REP family n=1 Tax=Methanobreviba... 67 3e-10 UniRef50_B7DM26 NERD domain protein n=1 Tax=Alicyclobacillus aci... 66 5e-10 UniRef50_A8II62 DNA topoisomerase (Fragment) n=1 Tax=Chlamydomon... 66 7e-10 UniRef50_C5DA42 NERD domain protein n=1 Tax=Geobacillus sp. WCH7... 66 8e-10 UniRef50_Q3BT95 DNA topoisomerase n=14 Tax=Gammaproteobacteria R... 65 9e-10 UniRef50_C6XEP4 DNA topoisomerase I n=1 Tax=Methylovorus sp. SIP... 65 1e-09 UniRef50_Q4QPE8 DNA topoisomerase n=23 Tax=Proteobacteria RepID=... 65 1e-09 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 65 1e-09 UniRef50_C6PBC0 DNA topoisomerase type IA zn finger domain prote... 65 1e-09 UniRef50_C7RD81 NERD domain protein n=4 Tax=Anaerococcus RepID=C... 65 1e-09 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 64 2e-09 UniRef50_A8SXH4 Putative uncharacterized protein n=1 Tax=Coproco... 64 2e-09 UniRef50_UPI000174264A helicase, UvrD/REP family protein n=2 Tax... 64 2e-09 UniRef50_Q64CK3 DNA topoisomerase n=2 Tax=environmental samples ... 64 3e-09 UniRef50_D2RGC8 DNA topoisomerase n=2 Tax=Archaeoglobaceae RepID... 64 3e-09 UniRef50_A6EQS9 Hypothetical membrane protein n=1 Tax=unidentifi... 64 3e-09 UniRef50_C5S684 DNA topoisomerase type IA zn finger domain prote... 64 3e-09 UniRef50_C5U8C5 DNA topoisomerase (Fragment) n=1 Tax=Methanocald... 62 7e-09 UniRef50_A1VWJ4 UvrD/REP helicase n=1 Tax=Polaromonas naphthalen... 61 2e-08 UniRef50_A5FDL0 NERD domain protein n=1 Tax=Flavobacterium johns... 60 3e-08 UniRef50_Q9X3X7 DNA topoisomerase 1 n=7 Tax=cellular organisms R... 59 5e-08 UniRef50_A3EW25 DNA topoisomerase n=3 Tax=Leptospirillum RepID=A... 59 7e-08 UniRef50_UPI00017C3C60 PREDICTED: hypothetical protein n=1 Tax=B... 59 9e-08 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 58 1e-07 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 58 2e-07 UniRef50_C5A9D2 DNA topoisomerase n=1 Tax=Burkholderia glumae BG... 57 3e-07 UniRef50_B3PMD8 DNA topoisomerase I n=3 Tax=Mycoplasma RepID=B3P... 54 2e-06 UniRef50_D2R6E6 DNA topoisomerase type IA zn finger domain prote... 54 2e-06 Sequences not found previously or not previously below threshold: UniRef50_Q46AN3 DNA topoisomerase n=3 Tax=Methanosarcina RepID=Q... 100 4e-20 UniRef50_A8F3N1 DNA topoisomerase n=2 Tax=Thermotogaceae RepID=A... 95 9e-19 UniRef50_Q9PHK2 DNA topoisomerase I, plasmid n=3 Tax=Gammaproteo... 85 1e-15 UniRef50_Q5ZHE3 DNA topoisimerase n=9 Tax=root RepID=Q5ZHE3_9BACT 79 8e-14 UniRef50_O73954 Endonuclease PI-PfuI n=2 Tax=Euryarchaeota RepID... 73 4e-12 UniRef50_A3X5L1 Helicase IV n=1 Tax=Roseobacter sp. MED193 RepID... 71 1e-11 UniRef50_Q481U8 Helicase IV n=1 Tax=Colwellia psychrerythraea 34... 71 2e-11 UniRef50_C0QM75 Multiple domain fusion protein (Zn-finger domain... 69 6e-11 UniRef50_B1L3G6 DNA topoisomerase I n=1 Tax=Candidatus Korarchae... 69 6e-11 UniRef50_B1VJ64 DNA topoisomerase n=9 Tax=Gammaproteobacteria Re... 69 7e-11 UniRef50_Q1Q866 UvrD/REP helicase n=4 Tax=Gammaproteobacteria Re... 68 1e-10 UniRef50_P40114 DNA topoisomerase 1 n=47 Tax=Bacillus cereus gro... 67 3e-10 UniRef50_C2XKX2 DNA topoisomerase n=7 Tax=Bacillus cereus group ... 67 3e-10 UniRef50_B0P1A6 Putative uncharacterized protein n=1 Tax=Clostri... 66 5e-10 UniRef50_Q28MI5 DNA topoisomerase n=13 Tax=Rhodobacterales RepID... 66 5e-10 UniRef50_B1M9R9 DNA topoisomerase I n=4 Tax=root RepID=B1M9R9_METRJ 66 5e-10 UniRef50_C7DGI7 DNA topoisomerase n=1 Tax=Candidatus Micrarchaeu... 66 5e-10 UniRef50_Q1UZD4 DNA topoisomerase n=4 Tax=Bacteria RepID=Q1UZD4_... 66 7e-10 UniRef50_B6YTB3 DNA topoisomerase n=4 Tax=Thermococcus RepID=B6Y... 66 7e-10 UniRef50_A1WZY5 DNA topoisomerase III n=6 Tax=Campylobacter RepI... 64 2e-09 UniRef50_A4RYV6 DNA topoisomerase (Fragment) n=5 Tax=cellular or... 64 2e-09 UniRef50_A6DJX4 DNA topoisomerase n=2 Tax=Bacteria RepID=A6DJX4_... 64 2e-09 UniRef50_B9TJX8 Putative uncharacterized protein n=1 Tax=Ricinus... 64 2e-09 UniRef50_O58356 DNA topoisomerase 1 n=2 Tax=Pyrococcus RepID=TOP... 64 3e-09 UniRef50_B8FJQ0 DNA topoisomerase type IA zn finger domain prote... 63 4e-09 UniRef50_B0TT01 UvrD/REP helicase n=4 Tax=Shewanella RepID=B0TT0... 63 5e-09 UniRef50_Q1V889 DNA topoisomerase I n=1 Tax=Vibrio alginolyticus... 63 5e-09 UniRef50_C6V581 DNA topoisomerase n=2 Tax=Neorickettsia RepID=C6... 62 8e-09 UniRef50_Q1AUL7 DNA topoisomerase n=1 Tax=Rubrobacter xylanophil... 62 8e-09 UniRef50_UPI0000E88005 helicase IV n=1 Tax=Methylophilales bacte... 62 1e-08 UniRef50_Q2B8U1 Putative uncharacterized protein n=1 Tax=Bacillu... 61 1e-08 UniRef50_D1AS14 DNA topoisomerase type IA central domain protein... 61 1e-08 UniRef50_A3DB61 DNA topoisomerase n=1 Tax=Shewanella baltica OS1... 61 2e-08 UniRef50_A7I6L6 DNA topoisomerase n=5 Tax=Methanomicrobiales Rep... 61 2e-08 UniRef50_A5G3C3 DNA topoisomerase, type IA, zn finger domain pro... 61 2e-08 UniRef50_A8U7S1 DNA topoisomerase n=2 Tax=Lactobacillales RepID=... 61 2e-08 UniRef50_A0RYH5 DNA topoisomerase I n=1 Tax=Cenarchaeum symbiosu... 60 2e-08 UniRef50_A7JLN3 Predicted protein n=3 Tax=Francisella RepID=A7JL... 60 3e-08 UniRef50_C5B550 DNA topoisomerase n=1 Tax=Methylobacterium extor... 60 4e-08 UniRef50_C7NA27 DNA topoisomerase n=20 Tax=Fusobacteriaceae RepI... 59 5e-08 UniRef50_UPI0001BC8A6C UvrD-like helicase IV n=1 Tax=Pseudomonas... 59 8e-08 UniRef50_C9KMQ0 DNA topoisomerase n=5 Tax=Bacteria RepID=C9KMQ0_... 59 8e-08 UniRef50_A3M2F6 TraB protein n=2 Tax=Acinetobacter baumannii ATC... 59 9e-08 UniRef50_B4EXZ8 DNA topoisomerase n=4 Tax=Enterobacteriaceae Rep... 59 1e-07 UniRef50_D1CHV6 DNA topoisomerase type IA zn finger domain prote... 58 1e-07 UniRef50_D0GKB0 DNA topoisomerase n=1 Tax=Leptotrichia goodfello... 58 1e-07 UniRef50_B5EPF0 DNA topoisomerase type IA zn finger domain prote... 58 1e-07 UniRef50_B2UHD2 DNA topoisomerase type IA zn finger domain prote... 58 1e-07 UniRef50_C6CZS8 DNA topoisomerase n=5 Tax=cellular organisms Rep... 58 1e-07 UniRef50_C1MSJ2 DNA topoisomerase n=1 Tax=Micromonas pusilla CCM... 58 1e-07 UniRef50_Q6YRP6 Slr6108 protein n=1 Tax=Synechocystis sp. PCC 68... 58 2e-07 UniRef50_C4V616 DNA topoisomerase n=1 Tax=Selenomonas flueggei A... 57 2e-07 UniRef50_C5Z4V5 DNA topoisomerase (Fragment) n=12 Tax=cellular o... 57 2e-07 UniRef50_D1HI22 DNA topoisomerase (Fragment) n=1 Tax=Vitis vinif... 57 2e-07 UniRef50_Q8K9P7 DNA topoisomerase 1 n=2 Tax=Gammaproteobacteria ... 57 4e-07 UniRef50_Q8L288 DNA restriction n=1 Tax=Proteus vulgaris RepID=Q... 57 4e-07 UniRef50_A3WL27 Probable transmembrane protein n=1 Tax=Idiomarin... 56 5e-07 UniRef50_A1TJM5 DNA topoisomerase n=55 Tax=Proteobacteria RepID=... 56 5e-07 UniRef50_C4ZF87 DNA topoisomerase I n=1 Tax=Eubacterium rectale ... 56 5e-07 UniRef50_Q0W2I3 DNA topoisomerase I n=2 Tax=Euryarchaeota RepID=... 56 5e-07 UniRef50_B9XT21 Restriction endonuclease n=1 Tax=bacterium Ellin... 56 6e-07 UniRef50_Q4A5N2 DNA topoisomerase n=2 Tax=Mycoplasma RepID=Q4A5N... 55 7e-07 UniRef50_B0G7K1 Putative uncharacterized protein n=1 Tax=Dorea f... 55 8e-07 UniRef50_Q1NX61 DNA topoisomerase I:Restriction endonuclease n=2... 55 9e-07 UniRef50_C5A9C5 UvrD/REP helicase n=2 Tax=Proteobacteria RepID=C... 55 1e-06 UniRef50_A5CF60 DNA topoisomerase n=2 Tax=Orientia tsutsugamushi... 55 2e-06 UniRef50_UPI000179C790 UPI000179C790 related cluster n=3 Tax=Bos... 54 2e-06 UniRef50_C0ZFC8 Putative uncharacterized protein n=2 Tax=Breviba... 54 2e-06 UniRef50_A4JFS2 DNA topoisomerase III n=4 Tax=Proteobacteria Rep... 54 2e-06 UniRef50_Q2FA01 Putative uncharacterized protein n=1 Tax=Vibrio ... 54 2e-06 UniRef50_C5V7F2 Restriction endonuclease n=1 Tax=Gallionella fer... 54 2e-06 UniRef50_UPI0001C3753D NERD domain protein n=1 Tax=Ruminococcus ... 54 3e-06 UniRef50_Q3BZV2 DNA topoisomerase n=1 Tax=Xanthomonas campestris... 54 3e-06 UniRef50_B4S2M3 Putative transmembrane protein n=1 Tax=Alteromon... 54 3e-06 UniRef50_A1SXM8 DNA-binding NERD domain-containing protein n=18 ... 54 3e-06 UniRef50_Q58078 Uncharacterized protein MJ0664 n=4 Tax=Methanoca... 54 3e-06 UniRef50_A4VK17 DNA topoisomerase I: Restriction endonuclease n=... 54 3e-06 UniRef50_A8S9Z2 Putative uncharacterized protein n=1 Tax=Faecali... 53 4e-06 UniRef50_B6KRJ5 DNA topoisomerase n=3 Tax=Toxoplasma gondii RepI... 53 4e-06 UniRef50_Q04TE1 DNA topoisomerase n=4 Tax=Leptospira RepID=Q04TE... 53 4e-06 UniRef50_C7NZB3 DNA topoisomerase type IA zn finger domain prote... 53 4e-06 UniRef50_C6N6E9 DNA topoisomerase n=2 Tax=Legionella drancourtii... 53 4e-06 UniRef50_C6NY48 DNA topoisomerase n=1 Tax=Acidithiobacillus cald... 53 4e-06 UniRef50_A3BAP2 DNA topoisomerase n=6 Tax=Poaceae RepID=A3BAP2_O... 53 4e-06 UniRef50_A2RKZ6 LtrE protein n=3 Tax=Lactococcus lactis RepID=A2... 53 5e-06 UniRef50_Q5UEY8 Putative uncharacterized protein n=2 Tax=uncultu... 53 5e-06 UniRef50_Q702B0 DNA topoisomerase n=1 Tax=uncultured crenarchaeo... 53 5e-06 UniRef50_Q18DJ2 DNA topoisomerase I n=2 Tax=Haloquadratum walsby... 53 5e-06 UniRef50_C3SA84 DNA topoisomerase n=1 Tax=Brachypodium distachyo... 52 6e-06 UniRef50_A6AAL5 Restriction endonuclease family n=5 Tax=Vibrio R... 52 6e-06 UniRef50_A0R979 DNA topoisomerase 3 n=95 Tax=Bacteria RepID=TOP3... 52 6e-06 UniRef50_C0A7I9 DNA topoisomerase type IA zn finger domain prote... 52 6e-06 UniRef50_C4ZL79 Restriction endonuclease n=4 Tax=Rhodocyclaceae ... 52 7e-06 >UniRef50_Q3A7H8 DNA topoisomerase n=13 Tax=Bacteria RepID=Q3A7H8_PELCD Length = 841 Score = 234 bits (596), Expect = 1e-60, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 3/178 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 ++K + T + + CP+CG LVI+ G+ G FL CS +P C Y PL + V+ Sbjct: 577 ISKQDVTTEKTDRICPECGKPLVIKLGRSGRFLACSGFPDCRYTEPL--AGQEREEPVMS 634 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 Q C CGA ++++QGR+G F+ C YPEC++ + + KP ITCPQC G L++++SR Sbjct: 635 DQTCEKCGAPMLIKQGRYGKFLACSAYPECKNIQPLVKPKALGITCPQCGEGELMEKKSR 694 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCGKPV 177 YGK F+SC+RYP+C++A+ PI CP+C +PL++EK T + G C + C V Sbjct: 695 YGKIFYSCNRYPKCKYALWDLPIEEPCPKCKFPLVVEKTTKRQGTFRKCPQEDCDWTV 752 Score = 63.2 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 12/104 (11%) Query: 80 MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 FI + E + ++ ++T CP+C LV + R G+ F +C +P+C++ Sbjct: 565 PFISRLKEKETQISKQDVTTEKTDRICPECGKP-LVIKLGRSGR-FLACSGFPDCRYTEP 622 Query: 140 F------KPI--AGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 +P+ C +C P+LI K+ G C++ +C Sbjct: 623 LAGQEREEPVMSDQTCEKCGAPMLI-KQGRYGKFLACSAYPECK 665 >UniRef50_B5EJ79 DNA topoisomerase n=61 Tax=Proteobacteria RepID=B5EJ79_ACIF5 Length = 851 Score = 226 bits (576), Expect = 3e-58, Method: Composition-based stats. Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 4/180 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 ++++ + E+CP+CG L +R G+HG F+ CS YP C+Y RP+ + Sbjct: 577 VSRAEATSEALEEACPQCGKPLFLRLGRHGRFVACSGYPECNYTRPVDGPREPAEPV--- 633 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G+ CP CG LV + GR+G FI C YPEC+H E + +P + +TCPQC G LV++RSR Sbjct: 634 GRDCPDCGKPLVYKTGRYGRFISCSGYPECKHIEPLTQPKSSGVTCPQCGEGELVEKRSR 693 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCGKPVSA 179 YGK F+SC+ YP+C +A+ P+A CP C +P++IEK + G + C +C A Sbjct: 694 YGKVFYSCNTYPKCTYAVWGPPVARPCPRCGWPIMIEKSGKRLGEQLACPQSECAFHFPA 753 >UniRef50_P45771 Uncharacterized protein yrdD n=427 Tax=Gammaproteobacteria RepID=YRDD_ECOLI Length = 180 Score = 218 bits (555), Expect = 7e-56, Method: Composition-based stats. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE Sbjct: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR Sbjct: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE Sbjct: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 >UniRef50_A0LDV2 DNA topoisomerase I n=7 Tax=Proteobacteria RepID=A0LDV2_MAGSM Length = 783 Score = 217 bits (552), Expect = 2e-55, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 102/176 (57%), Gaps = 2/176 (1%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-LE 60 +K + T + +E CPKCGA L I+ G+ G F C+ YP C + PL + + L Sbjct: 595 SKEEVTTEQIDEPCPKCGAPLSIKLGRFGKFKACTGYPECKHTEPLNKEEEVSRPEPELT 654 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 C CG +++++GR+G + GC PEC++ + ++KP +T + CP C G ++++SR Sbjct: 655 DIPCDKCGKPMLIKEGRYGKYYGCSGAPECKNNQPLNKPRDTGVACPSCGQGTFLEKKSR 714 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGK 175 GK F+SC YP+C+ A+ +P+ CP+C P + +K T +G +H C ++ C Sbjct: 715 RGKIFYSCSNYPKCKQALWDEPLEIPCPKCQAPFVTKKVTKTRGTEHICVAEGCDY 770 >UniRef50_Q01N68 DNA topoisomerase n=7 Tax=Bacteria RepID=Q01N68_SOLUE Length = 934 Score = 213 bits (541), Expect = 3e-54, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 7/169 (4%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 ESC CG +V++ G+ G F CS+YP C R + + V + CP C N Sbjct: 765 EEESCENCGRPMVLKKGRFGTFFACSEYPDCKTTRQIGGTQKKD---VPLDEKCPQCDNN 821 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 LV++ GRFG F C NYP C++ K + CP+C G +++RRS+ GKTF+ C+R Sbjct: 822 LVMKYGRFGEFTACSNYPTCKYV----KQKTIGVKCPECSEGDIIERRSKKGKTFYGCNR 877 Query: 131 YPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 YP+C F KP+A +CPEC P +IEK G C + +C V A Sbjct: 878 YPDCTFVAWGKPVAEKCPECGSPYMIEKFLKSGAFWQCPNAECKHQVEA 926 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 18/131 (13%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 V +E CP+C LV++ G+ G F CS YP C YV+ G CP C Sbjct: 808 DVPLDEKCPQCDNNLVMKYGRFGEFTACSNYPTCKYVKQKT-----------IGVKCPEC 856 Query: 68 G-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 +++ R+ + G F GC YP+C + A CP+C + +++++ + G F Sbjct: 857 SEGDIIERRSKKGKTFYGCNRYPDCTF---VAWGKPVAEKCPECGSPYMIEKFLKSG-AF 912 Query: 126 HSCDRYPECQF 136 C EC+ Sbjct: 913 WQCPNA-ECKH 922 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 67/223 (30%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPA--CDYVRPLKSSADGHIVKVLEGQVCPA 66 + C KCG LVI+ GKHG F+ C+ YP + I +V + Sbjct: 584 KPTDLICEKCGRPLVIKWGKHGSFIACTGYPDFSSKSIESDLEKVQKDI-EVRRQRALKK 642 Query: 67 CGANLVLRQGRF----------GMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 +L + ++ G F+ + P+ I KP + A+ + V+ Sbjct: 643 IELSLEKLRAKYPDRTITWGQDGEFLVIPSAPK------IPKPMDAALK--KLEKEIAVK 694 Query: 117 RRSRYGKTFHSCD----RYPE--------------------------CQFA--------- 137 R GK + RYP+ C + Sbjct: 695 RSEDRGKIEARLEKLQARYPQMKGFYDLDLRDTAEGVALTVRRKEEFCTYTRELTVDLPD 754 Query: 138 -----INFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 ++ + C C P+++ KK G C+ C Sbjct: 755 LEGADLSEQGEEESCENCGRPMVL-KKGRFGTFFACSEYPDCK 796 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 51 ADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPE 89 D ++ +C CG LV++ G+ G FI C YP+ Sbjct: 577 TDIKRMEKPTDLICEKCGRPLVIKWGKHGSFIACTGYPD 615 >UniRef50_Q2LT40 DNA topoisomerase n=2 Tax=Bacteria RepID=Q2LT40_SYNAS Length = 769 Score = 204 bits (519), Expect = 1e-51, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 9/181 (4%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-- 58 M + C KC + +VI+ GK+G F+ CS YPAC R ++ Sbjct: 589 MKNIKREETPTDLICEKCQSPMVIKWGKNGKFIACSNYPACKNTRNIEQGEGVERSAKGG 648 Query: 59 -LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQ 116 + VCP CG N++++ GRFG F+GC YP+C+HT I + CPQ G +++ Sbjct: 649 EMTDTVCPKCGKNMLIKHGRFGRFLGCSGYPDCKHTMPIS----LGVKCPQEGCDGEIIE 704 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGK 175 +R++ G++F C YP C FA+ KPI CP+C+ P L+EK + +G C +K CG Sbjct: 705 KRTKKGRSFFGCSNYPNCTFAVWDKPIPEPCPQCNSPFLVEKYSRTEGSYKACPNKDCGY 764 Query: 176 P 176 Sbjct: 765 R 765 >UniRef50_A8ZW15 DNA topoisomerase n=3 Tax=Desulfobacteraceae RepID=A8ZW15_DESOH Length = 758 Score = 199 bits (507), Expect = 2e-50, Method: Composition-based stats. Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 11/175 (6%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL------EGQVC 64 SCP+CG EL I+ GK+GPFL CS YP C + R + G + V EG+ C Sbjct: 579 TGLSCPECGKELKIKLGKNGPFLACSGYPDCKFSRNYARTDKGTVEPVEPDLTVAEGKSC 638 Query: 65 PACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD---ETAITCPQCR-TGHLVQRRSR 120 CG+ +V++QGR+G F+ C YP+C+ T+ ++ + CP+ G +V+++S+ Sbjct: 639 EKCGSPMVVKQGRYGDFLACSAYPDCKSTQSLNSGANAAPIGVKCPEPGCNGDIVEKKSK 698 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCG 174 GK F+ C R+P+C FA KP+ CP+C P ++EK T + G CAS+ CG Sbjct: 699 RGKVFYGCSRFPKCTFASWDKPVDMACPDCGAPFVVEKTTKKEGTVLTCASEGCG 753 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 6/123 (4%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 TV +SC KCG+ +V++ G++G FL CS YP C + L S A+ + V + P Sbjct: 630 LTVAEGKSCEKCGSPMVVKQGRYGDFLACSAYPDCKSTQSLNSGANAAPIGVKCPE--PG 687 Query: 67 CGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 C ++V ++ + G F GC +P+C D + CP C +V++ ++ T Sbjct: 688 CNGDIVEKKSKRGKVFYGCSRFPKCTFASWDKPVD---MACPDCGAPFVVEKTTKKEGTV 744 Query: 126 HSC 128 +C Sbjct: 745 LTC 747 >UniRef50_Q1ILA9 DNA topoisomerase n=9 Tax=Bacteria RepID=Q1ILA9_ACIBL Length = 853 Score = 199 bits (506), Expect = 4e-50, Method: Composition-based stats. Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 6/172 (3%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + E C CG +V++ G+ G F+ C+ YP C R L + I V Sbjct: 642 LDTADVQETEQEEYCENCGRGMVLKRGRFGQFMACTGYPECKTTRRLDQA--KKIPDVPL 699 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 + CP C LVLR GRFG F+ C YPEC+ K + + CPQC+ G +V++++R Sbjct: 700 DEKCPECTRPLVLRHGRFGEFVSCSGYPECKWI----KQNFVGVKCPQCKEGEIVEKKAR 755 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQ 172 G F+ C RYP+C F KP+A CP+C ++EKK G C + + Sbjct: 756 RGNFFYGCARYPKCDFTSANKPVAQPCPKCGSEYVLEKKLKSGTYLTCPNNK 807 >UniRef50_UPI0001698F80 DNA topoisomerase I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F80 Length = 424 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 1/149 (0%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP-LKSSADGHIVKVL 59 + +S + +E CPKCG +L IR G+HG F+GC+ YP CDY R ++ +V+ Sbjct: 217 VKRSDVTHEALDEKCPKCGDQLSIRLGRHGRFIGCNNYPKCDYTRDLNADKSEQDEPQVV 276 Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 EG+ CP CG+ LV+++GR+G FIGC YP C H E ++KP +T ++CP+C G L++R+S Sbjct: 277 EGRSCPECGSPLVIKRGRYGKFIGCSGYPNCRHIEPLEKPQDTGVSCPKCGNGTLLKRKS 336 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECP 148 + GK F+SC YP+C +A+ +P+ G P Sbjct: 337 KRGKIFYSCSTYPDCDYAVWNEPVDGPWP 365 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 17/152 (11%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT-------- 93 DY + ++ + + CP CG L +R GR G FIGC NYP+C++T Sbjct: 211 DYTQ--ENVKRSDVTHEALDEKCPKCGDQLSIRLGRHGRFIGCNNYPKCDYTRDLNADKS 268 Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP---IAGECPEC 150 E + +CP+C + LV +R RYGK F C YP C+ + CP+C Sbjct: 269 EQDEPQVVEGRSCPECGSP-LVIKRGRYGK-FIGCSGYPNCRHIEPLEKPQDTGVSCPKC 326 Query: 151 HYPLLIEKKTAQGVKHF-CAS-KQCGKPVSAE 180 L+++K+ +G + C++ C V E Sbjct: 327 GNGTLLKRKSKRGKIFYSCSTYPDCDYAVWNE 358 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 11 NNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 SCPKCG L+ R K G F CS YP CDY + L G Sbjct: 319 TGVSCPKCGNGTLLKRKSKRGKIFYSCSTYPDCDYAVWNEPVDGPWPPLRLAGADHQDH 377 >UniRef50_D0LR99 DNA topoisomerase n=169 Tax=cellular organisms RepID=D0LR99_HALO1 Length = 894 Score = 191 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 12/185 (6%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + + C KCGA +VI+ G++G FL C YP C + + + DG V E Sbjct: 710 MRDVKREEIPTDHVCEKCGAPMVIKWGRNGSFLACQAYPDCRNTKEINRNPDGSFEIVPE 769 Query: 61 ---GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQ 116 + C CGA +V+++GRFG F+ C YPEC++T+ I + CP+ G L + Sbjct: 770 QTTDETCSECGAPMVVKRGRFGAFLACSTYPECKNTQPIS----LGVDCPKDGCGGFLTE 825 Query: 117 RRSRYGKTFHSCDRYPE--CQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 +RSR GK F+ C Y + C F +PIA CP C L++K+T +G C S C Sbjct: 826 KRSRRGKPFYGCSNYSKTGCDFVTWDRPIAEACPVCEASFLVKKETRRGTTVRCLS--CD 883 Query: 175 KPVSA 179 Sbjct: 884 YKTEQ 888 >UniRef50_C6HWV0 DNA topoisomerase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWV0_9BACT Length = 865 Score = 191 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 66/176 (37%), Positives = 87/176 (49%), Gaps = 10/176 (5%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL--EG 61 + E C CG +++R G+ G FL CS YPAC RP L + Sbjct: 684 PEVLPEAPGEVCQTCGKPMIVRKGRFGTFLACSDYPACKTTRPWPPKGQPSPPVPLPADL 743 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC--PQCRTGHLVQRRS 119 CPACG +V++ GRFG F+ C NYP C+ T + T I C P C G +V RR Sbjct: 744 PPCPACGGAMVVKSGRFGSFLSCANYPACKTTRPL----PTGIRCTRPGCD-GEIVPRRG 798 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 + G F+ C RYPEC +P+A CP C + L+EKKT ++ C K CG Sbjct: 799 KRG-VFYGCSRYPECDRTYPGRPVARPCPSCGHAFLMEKKTGGKLRLVCPEKDCGY 853 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 30/118 (25%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK-------------------------- 48 CP CG +V++SG+ G FL C+ YPAC RPL Sbjct: 746 CPACGGAMVVKSGRFGSFLSCANYPACKTTRPLPTGIRCTRPGCDGEIVPRRGKRGVFYG 805 Query: 49 ----SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 D + CP+CG ++ + G +C + + T Sbjct: 806 CSRYPECDRTYPGRPVARPCPSCGHAFLMEKKTGGKLRLVCPEKDCGYEAPEGEDPGT 863 >UniRef50_B9L7D9 DNA topoisomerase n=1 Tax=Nautilia profundicola AmH RepID=B9L7D9_NAUPA Length = 728 Score = 189 bits (479), Expect = 5e-47, Method: Composition-based stats. Identities = 65/178 (36%), Positives = 104/178 (58%), Gaps = 10/178 (5%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S +E+CP CG+ LVIR G+ G F+ CS YP C Y RPL+ S + V Sbjct: 559 SQKIAKPIDETCPLCGSPLVIRKGRFGEFIACSSYPKCKYTRPLEESKEEKKTDV----K 614 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE-TAITCPQCRTGHLVQRRSRYG 122 C CGA++V+++G+ G F+ C NYP+C++T+ ++ P+ + CP+C G +V+R+SR G Sbjct: 615 CDKCGADMVVKKGKSGEFLACSNYPKCKNTKPLNAPEVLDDVKCPECG-GDIVKRKSRRG 673 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 + F+ C YP+C F ++P+ +CPEC Y L+ E+ + + C +C A+ Sbjct: 674 E-FYGCANYPKCNFISKYRPVNKKCPECGY-LMAERTYRKKDVYECI--KCKHREEAK 727 >UniRef50_B0VJB5 DNA topoisomerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJB5_9BACT Length = 739 Score = 188 bits (477), Expect = 9e-47, Method: Composition-based stats. Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 9/165 (5%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI---VKVLEGQVCPA 66 C C ++I+ K G FL CS++P C + DG+I V + CP Sbjct: 573 TGIVCDVCKQGTMLIKHSKRGDFLSCSRFPQCKNTKNFTRDEDGNIKIFVPTPLNENCPQ 632 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 CG+ L+LR G++G FI C NYP+C++ +P I CP+C G L R+S+ G+TF+ Sbjct: 633 CGSPLMLRTGKYGEFIACSNYPKCKYA----RPKTLGIKCPECGIGELTARKSKKGRTFY 688 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCAS 170 SC+RYPEC++ N KP+ CP+C P ++EK + +G C + Sbjct: 689 SCNRYPECKYITNDKPLPISCPKCGNPYIVEKYSREKGKIKICPN 733 Score = 98.6 bits (244), Expect = 9e-20, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 16/146 (10%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDK---- 98 +R + + + G VC C ++++ + G F+ C +P+C++T+ + Sbjct: 557 IRQVDVKKEKNNFVQDTGIVCDVCKQGTMLIKHSKRGDFLSCSRFPQCKNTKNFTRDEDG 616 Query: 99 ------PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHY 152 P CPQC + ++ R +YG+ F +C YP+C++A K + +CPEC Sbjct: 617 NIKIFVPTPLNENCPQCGSPLML-RTGKYGE-FIACSNYPKCKYARP-KTLGIKCPECGI 673 Query: 153 PLLIEKKTAQGVKHFCASK--QCGKP 176 L +K+ +G + ++ +C Sbjct: 674 GELTARKSKKGRTFYSCNRYPECKYI 699 >UniRef50_B5YKX8 DNA topoisomerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKX8_THEYD Length = 777 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 7/171 (4%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 ++ + C KCG ++VIR K PFL CS YP C R L ++ +G K L + CP CG Sbjct: 587 IKTSFKCEKCGKDMVIRWSKGVPFLACSGYPECKNTRSLNNNENGSTKKTL-DKKCPQCG 645 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 A LV+R G+ G FI C NYP+C+ T+ I + CPQC G +++++++ G+TF +C Sbjct: 646 AQLVVRNGKRGEFIACSNYPKCKFTQSITAQ----VKCPQCG-GDILKKQTKKGRTFWAC 700 Query: 129 DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH-FCASKQCGKPVS 178 YP+C+F ++ +P+ ECP+C +++KK G + C +K C + Sbjct: 701 ANYPKCKFTLSNEPVPAECPKCKSSYMLKKKDRNGTEFLICHNKACKGKIE 751 Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 13/86 (15%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 ++ CP+CG +++ + K G F C+ YP C + + Sbjct: 668 KFTQSITAQVKCPQCGGDILKKQTKKGRTFWACANYPKCKFTLSNEPVPAE--------- 718 Query: 63 VCPAC-GANLVLRQGRFGM-FIGCIN 86 CP C + ++ ++ R G F+ C N Sbjct: 719 -CPKCKSSYMLKKKDRNGTEFLICHN 743 >UniRef50_D1U7W1 DNA topoisomerase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U7W1_9DELT Length = 821 Score = 187 bits (476), Expect = 1e-46, Method: Composition-based stats. Identities = 61/176 (34%), Positives = 88/176 (50%), Gaps = 12/176 (6%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV----- 63 C KCG + I+ + G FLGC+ YP C + + +G I + ++ Sbjct: 627 EETGVECEKCGKPMAIKQSRRGEFLGCTGYPDCKNIVNFQRDENGAISVIESEKLQVVGS 686 Query: 64 CPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQRRSRY 121 CP CG L+L++ R G FI C NYP+C + P T + CP + G LV++ SR Sbjct: 687 CPDCGGELLLKKARTGSRFIACSNYPDCTYA----APFSTGVPCPVEGCAGELVEKSSRR 742 Query: 122 GKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKP 176 GK F SC YP+C +A+ P+ CP+C +P+L K T +G C K CG Sbjct: 743 GKIFFSCSAYPKCDYAVWNWPVNEPCPKCGHPILTRKTTKDKGEHLACPQKGCGYT 798 Score = 102 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 31/162 (19%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI------ 96 Y K+ + + VC CG + ++ G+ G F+GC +P C + Sbjct: 557 YPTLEKARTEMARSQQETDIVCENCGKPMSIKFGKTGEFLGCTGFPTCRTIKNFTRDENG 616 Query: 97 -------DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK-------- 141 + P+ET + C +C + ++SR G+ F C YP+C+ +NF+ Sbjct: 617 AIRIVERETPEETGVECEKCGKP-MAIKQSRRGE-FLGCTGYPDCKNIVNFQRDENGAIS 674 Query: 142 -------PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGK 175 + G CP+C LL++K C++ C Sbjct: 675 VIESEKLQVVGSCPDCGGELLLKKARTGSRFIACSNYPDCTY 716 >UniRef50_A6DDI1 DNA topoisomerase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDI1_9PROT Length = 725 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 57/175 (32%), Positives = 97/175 (55%), Gaps = 9/175 (5%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S E CP+CG LVIR G+ G F+ CS +P C Y RP++ + + Sbjct: 559 SQKIAKPTGELCPECGNPLVIRKGRFGEFIACSNFPKCKYTRPIEEKEEKKV-----DVK 613 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA-ITCPQCRTGHLVQRRSRYG 122 C CGA++V+++G+ G F+ C NYPEC++T+ ++ P+ + CP+C G +++R+SR G Sbjct: 614 CDKCGADMVIKRGKRGEFLACSNYPECKNTKPLNPPEVLEDVKCPECG-GDIIKRKSRRG 672 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPV 177 + F+ C YP+C F ++P+ +C EC Y ++ ++ C + K + Sbjct: 673 E-FYGCGNYPKCNFISKYRPVNEKCDECGY-MMAKRTYRNKEVLECIKCKARKEI 725 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 10/140 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 + + G++CP CG LV+R+GRFG FI C N+P+C++T I++ +E Sbjct: 548 KLIEKGYEEIPSQKIAKPTGELCPECGNPLVIRKGRFGEFIACSNFPKCKYTRPIEEKEE 607 Query: 102 TA--ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----IAGECPECHYPLL 155 + C +C +V +R + G+ F +C YPEC+ P +CPEC + Sbjct: 608 KKVDVKCDKCGA-DMVIKRGKRGE-FLACSNYPECKNTKPLNPPEVLEDVKCPECG-GDI 664 Query: 156 IEKKTAQGVKHFCAS-KQCG 174 I++K+ +G + C + +C Sbjct: 665 IKRKSRRGEFYGCGNYPKCN 684 >UniRef50_C1F6V0 DNA topoisomerase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F6V0_ACIC5 Length = 878 Score = 184 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 17 KCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CG +V+R+G GPF+ C Y P C + + CP CG LVL Sbjct: 661 NCGRVMVLRNGPWGPFMACPGYNEDPPCK-TVRRLNQKQQQKPPQPLDEKCPKCGEQLVL 719 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 R G++G FI C YP+C++ K + + CPQC+ G +V++++R G F+ C YP+ Sbjct: 720 RHGQYGEFISCSGYPKCKYI----KQNTIGMKCPQCKVGEIVEKKARRGNFFYGCSEYPK 775 Query: 134 CQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 C F N+KP+ +CPEC L+EK GV C + + KP + E Sbjct: 776 CDFTANYKPVDRKCPECGSAYLMEKTLKSGVYLVCPNNK--KPSAEE 820 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 29/160 (18%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 +E CPKCG +LV+R G++G F+ CS YP C Y++ G CP C Sbjct: 707 DEKCPKCGEQLVLRHGQYGEFISCSGYPKCKYIKQNT-----------IGMKCPQCKVGE 755 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 +V ++ R G F GC YP+C+ T D CP+C + +L+++ + G + C Sbjct: 756 IVEKKARRGNFFYGCSEYPKCDFTANYKPVD---RKCPECGSAYLMEKTLKSG-VYLVCP 811 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCA 169 N KP A E +KK G C+ Sbjct: 812 N--------NKKPSAEE----ETTTKRKKKGDTGEGVSCS 839 >UniRef50_A3EPL6 DNA topoisomerase n=2 Tax=Leptospirillum sp. Group II RepID=A3EPL6_9BACT Length = 850 Score = 183 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 88/171 (51%), Gaps = 9/171 (5%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL--EGQVCP 65 + E C C A +VI+ G+ G FL CS+YP C RP A+ + V E VCP Sbjct: 681 ALPEGEVCHVCQAPMVIKKGRFGTFLACSRYPECKTTRPWPPKAEASLPAVSPAEAPVCP 740 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQRRSRYGKT 124 C + +V ++GRFG F C YPEC+ T + T CP + G LV RR + G T Sbjct: 741 ECSSPMVQKRGRFGSFWACSRYPECKGTRPL----ATGHPCPVKGCKGELVPRRGKRG-T 795 Query: 125 FHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 F+ C RYPEC F +N +P+ CP+C +P + + V C ++ C Sbjct: 796 FYGCSRYPECTFLLNGEPVRDPCPDCQFPY-RVRTGKKSVDLVCPNEACSH 845 Score = 95.2 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 51/122 (41%), Gaps = 20/122 (16%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 + CP+C + +V + G+ G F CS+YP C RPL G C Sbjct: 729 PAVSPAEAPVCPECSSPMVQKRGRFGSFWACSRYPECKGTRPL-----------ATGHPC 777 Query: 65 P--ACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 P C LV R+G+ G F GC YPEC + + CP C+ + R R G Sbjct: 778 PVKGCKGELVPRRGKRGTFYGCSRYPECTFLLNGEPVRD---PCPDCQFPY----RVRTG 830 Query: 123 KT 124 K Sbjct: 831 KK 832 >UniRef50_Q9ZMV7 DNA topoisomerase 1 n=47 Tax=Epsilonproteobacteria RepID=TOP1_HELPJ Length = 736 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 15/182 (8%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S + +SCPKCG ELV ++ ++G F+ C+ YP C Y++ +++ D + ++ Sbjct: 561 SQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYIKQTENANDE-----AKQEL 615 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELID-----KPDETAITCPQCRTGHLVQRR 118 C CG +V + R G F+ C NYPEC++T+ + K + CP+C G + +R Sbjct: 616 CEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEGVKCPECG-GDIALKR 674 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 S+ G +F+ C+ YP+C F N KPI C +CHY L+ E+ + H C C + V Sbjct: 675 SKKG-SFYGCNNYPKCNFLSNHKPINKRCEKCHY-LMSERIYRKKKAHECIQ--CKERVF 730 Query: 179 AE 180 E Sbjct: 731 LE 732 >UniRef50_C9LM02 DNA topoisomerase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM02_9FIRM Length = 799 Score = 179 bits (454), Expect = 4e-44, Method: Composition-based stats. Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 8/170 (4%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 ++ C KCGA ++++ ++G +L C +P+C ++P + + + ++ Sbjct: 599 KEENQEVSDVICEKCGAHMIVKMSRYGKYLACPNFPSCKNIKPYHTGEEKEEISDVD--- 655 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 C CGA +V RQG +G ++ C PEC + I +T I CP+C GHLV+RRS+ G+ Sbjct: 656 CDKCGAKMVYRQGPYGRYLKC---PECGQNKAI--VIDTGIECPKCHEGHLVKRRSKRGR 710 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 F+ C RYP C A+ +P+ C C + + + + + C++ +C Sbjct: 711 YFYGCSRYPACDMAVWDEPVNEFCSVCGAIKVKKVRKNKEEELICSNPEC 760 >UniRef50_C6BUQ9 DNA topoisomerase n=14 Tax=Desulfovibrionales RepID=C6BUQ9_DESAD Length = 800 Score = 178 bits (452), Expect = 7e-44, Method: Composition-based stats. Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 13/179 (7%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ-----VCP 65 +C KCG+ + I+ G FLGC+ YP C ++ + +G I V CP Sbjct: 624 TGVTCEKCGSAMAIKRSNRGEFLGCTGYPDCRNIKNFERDDEGKIKVVETPTAQIVGKCP 683 Query: 66 ACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQRRSRYG 122 C +L+++ R G FI C NYP+C+H KP T + CP+ G LV++ SR G Sbjct: 684 DCDDGDLIIKHARTGSRFIACSNYPDCKHA----KPFSTGVKCPREGCKGELVEKSSRRG 739 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPVSAE 180 K F+SCD+YP+C +A+ + PI G CP+C +P+L++K T +G C K CG E Sbjct: 740 KLFYSCDQYPDCDYAVWYPPIDGPCPKCGHPVLVKKTTRAKGEHIACPEKGCGYVQGEE 798 Score = 95.9 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 68/163 (41%), Gaps = 32/163 (19%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE- 101 Y ++ + G C C + +V++ GR G F+GC NYPEC++ + ++ Sbjct: 552 YPTLETAAKEMKRGGEDTGITCDKCESPMVIKFGRTGEFLGCSNYPECKNIVNFTRDEKG 611 Query: 102 ------------TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK-------- 141 T +TC +C + ++R +R F C YP+C+ NF+ Sbjct: 612 KIVVLEEEPPEETGVTCEKCGSAMAIKRSNR--GEFLGCTGYPDCRNIKNFERDDEGKIK 669 Query: 142 ----PIA---GECPECHYPLLIEKKTAQGVKHF-CAS-KQCGK 175 P A G+CP+C LI K G + C++ C Sbjct: 670 VVETPTAQIVGKCPDCDDGDLIIKHARTGSRFIACSNYPDCKH 712 >UniRef50_C1XK22 DNA topoisomerase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XK22_MEIRU Length = 836 Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 11/168 (6%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 F + CPKCG L ++ + G FLGC+ YP C + L+ + + G+ CPA Sbjct: 570 FAKVPQKLCPKCGRPLELKVSRFGQFLGCTGYPECKHTERLELKKEPEPI----GEACPA 625 Query: 67 CG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 CG LV R GR+G FI C YPEC++T D+ T I CP+C G +VQ+ S+ GK + Sbjct: 626 CGEGQLVRRHGRYGSFISCSRYPECKYTR--DEAPSTGIECPKCHAGEVVQKTSKRGKPY 683 Query: 126 HSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 + C+ P C F + +CP C + E + K C + C Sbjct: 684 YRCNN-PACDFLSFDPLLPDKCPLCGW---NEVAKGRSGKRACTNPGC 727 >UniRef50_A9FRC6 DNA topoisomerase I n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FRC6_SORC5 Length = 864 Score = 175 bits (444), Expect = 6e-43, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 10/171 (5%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 + + C +CG+ ++ + GK+G FL C +YP C R L + V+ C C Sbjct: 623 AEKTDIVCDECGSMMLKKWGKNGWFLSCERYPKCKATRDLSDARGTAAVR-ETDISCDKC 681 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQR-RSRYGKTFH 126 G ++++ GRFG F+ C YP C++T + + CP C + R R + G+TF+ Sbjct: 682 GKPMIIKTGRFGDFLSCTGYPACKNTRPV----PLGVACPSCGGDLIEIRPRKKGGRTFY 737 Query: 127 SCDRY---PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 C + +C+F + KP+ CP+C + + + CA+K CG Sbjct: 738 GCSNWNAEQKCEFKLWQKPVPVPCPQCGAKFVT-RTAGKKAMLVCATKDCG 787 >UniRef50_Q7NGH1 DNA topoisomerase n=1 Tax=Gloeobacter violaceus RepID=Q7NGH1_GLOVI Length = 765 Score = 175 bits (443), Expect = 6e-43, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV-KVLEGQVCPAC 67 + + C CG L+ R G+ G FLGCS YP CD+ L + EG C C Sbjct: 583 IVTDHLCESCGRPLLNRYGRFGNFLGCSGYPECDFTHQLTRDNKPVPKDRPAEGISCNQC 642 Query: 68 GA-NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 G +++ GR+G ++ C P C ++ P T ITCP+C G +V+RRS+ GK F+ Sbjct: 643 GHAPMLITYGRYGEYLKC---PACGKSQ----PKSTGITCPKCSKGQIVERRSKMGKNFY 695 Query: 127 SCDRYPECQFAINFKPIAGE-CPECHYPLLIEKKTAQGVKHFCA 169 CD+YP+C F + +PI CPEC LL + + C+ Sbjct: 696 GCDQYPDCDFVLWSRPIDKPACPECGSILLYKPRKRGDDMVACS 739 >UniRef50_Q7MGL0 DNA topoisomerase I-related protein n=77 Tax=Gammaproteobacteria RepID=Q7MGL0_VIBVY Length = 231 Score = 175 bits (443), Expect = 7e-43, Method: Composition-based stats. Identities = 87/169 (51%), Positives = 117/169 (69%), Gaps = 7/169 (4%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP+CG ELV++ GKHG FLGC+QYP CDYV+PL + + + G CP CG LVLR Sbjct: 64 CPQCGGELVLKHGKHGAFLGCNQYPQCDYVKPLHQNDGHIVKE--LGVACPECGNELVLR 121 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAIT-----CPQCRTGHLVQRRSRYGKTFHSCD 129 QGR+GMF+GC +YP C H E I++P+ CP+C GHLV+R++R+GKTF++CD Sbjct: 122 QGRYGMFVGCSHYPLCHHIEPINQPEPEQNPKALFACPECGKGHLVERKTRFGKTFYACD 181 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 YP+C+FA+N P+ G C C +PLL+EKK A GVK CA+++C S Sbjct: 182 NYPKCKFAVNLPPVKGHCETCGFPLLVEKKLASGVKLQCANRKCQHTQS 230 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 +CP+CG ELV+R G++G F+GCS YP C ++ P+ K L CP CG + Sbjct: 108 GVACPECGNELVLRQGRYGMFVGCSHYPLCHHIEPINQPEPEQNPKAL--FACPECGKGH 165 Query: 71 LVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 LV R+ RFG F C NYP+C+ + C C LV+++ G C Sbjct: 166 LVERKTRFGKTFYACDNYPKCKFAVNL---PPVKGHCETCGFPLLVEKKLASGVK-LQCA 221 Query: 130 RYPECQFAIN 139 +CQ + Sbjct: 222 NR-KCQHTQS 230 >UniRef50_C1ABE5 DNA topoisomerase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE5_GEMAT Length = 816 Score = 174 bits (440), Expect = 2e-42, Method: Composition-based stats. Identities = 62/172 (36%), Positives = 85/172 (49%), Gaps = 11/172 (6%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGA 69 E CP CG +LV + G GPF+ C +P C Y RP+K L +C CGA Sbjct: 642 ETERCPDCGGKLVAKGGFFGPFVACENHPKACKYTRPIKGE---KKPAELTNYMCQECGA 698 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY-GKTFHSC 128 +V+R GR G F+GC +P+C T + T + CP+ G + +RRS+ GK F+ C Sbjct: 699 PMVIRHGRSGDFLGCSKFPKCRGTRSM----PTGVKCPK-DGGEIAERRSKKRGKAFYGC 753 Query: 129 DRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPVSA 179 + YP C F + KP+A CPEC Y K +G C V+A Sbjct: 754 ENYPNCDFVVWDKPVAETCPECGYVGAEAKSNKTRGSFRKCLKCSNEWDVAA 805 Score = 95.9 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 19/132 (14%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 N C +CGA +VIR G+ G FLGCS++P C R + G Sbjct: 682 EKKPAELTNYMCQECGAPMVIRHGRSGDFLGCSKFPKCRGTRSMP-----------TGVK 730 Query: 64 CPACGANLVLRQGRF--GMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP G + R+ + F GC NYP C+ ET CP+C + ++ Sbjct: 731 CPKDGGEIAERRSKKRGKAFYGCENYPNCDFVVWDKPVAET---CPECGYVGAEAKSNKT 787 Query: 122 GKTF---HSCDR 130 +F C Sbjct: 788 RGSFRKCLKCSN 799 >UniRef50_Q5SM69 DNA topoisomerase n=2 Tax=Thermus thermophilus RepID=Q5SM69_THET8 Length = 830 Score = 173 bits (438), Expect = 3e-42, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 ++CP+CG L ++ ++G FLGC+ YP C Y PL+ I G+ CP Sbjct: 583 LAQVPKKTCPRCGRPLELKVSRYGQFLGCTGYPECTYTEPLERREAEPI-----GEACPK 637 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 CG L+ ++GR+G FI C YPEC++T P T TCP+C G ++++RSR G+ ++ Sbjct: 638 CGRPLLRKEGRYGTFIACSGYPECDYTRDDGTP--TGHTCPKCG-GRVLEKRSRKGRPYY 694 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C+ C F + + CP C +PL+ +G K C + C Sbjct: 695 KCENN-ACDFLSFYPLLEEACPACGWPLV-----KKGEKALCLNPAC 735 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP--DETAITCP 107 + + + CP CG L L+ R+G F+GC YPEC +TE +++ + CP Sbjct: 577 EPFLGELAQVPKKTCPRCGRPLELKVSRYGQFLGCTGYPECTYTEPLERREAEPIGEACP 636 Query: 108 QCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-KPIAGECPECHYPLLIEKKTAQGVKH 166 +C L+++ RYG TF +C YPEC + + P CP+C +L ++ + Sbjct: 637 KCGRP-LLRKEGRYG-TFIACSGYPECDYTRDDGTPTGHTCPKCGGRVLEKRSRKGRPYY 694 Query: 167 FCASKQC 173 C + C Sbjct: 695 KCENNAC 701 Score = 89.4 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 24/143 (16%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 E+CPKCG L+ + G++G F+ CS YP CDY R G CP C Sbjct: 628 AEPIGEACPKCGRPLLRKEGRYGTFIACSGYPECDYTRDD---------GTPTGHTCPKC 678 Query: 68 GANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 G ++ ++ R G + C N C+ +E CP C LV++ + Sbjct: 679 GGRVLEKRSRKGRPYYKCENN-ACDFLSFYPLLEE---ACPACGWP-LVKKGEKAL---- 729 Query: 127 SCDRYPECQFAINFKPIAGECPE 149 C P C +P P+ Sbjct: 730 -CLN-PACP---EHEPSLLPAPK 747 >UniRef50_A7NJW2 DNA topoisomerase I n=3 Tax=Bacteria RepID=A7NJW2_ROSCS Length = 836 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 23/190 (12%) Query: 1 MAKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV--- 56 M + + +CP+C +L ++ G++G FL C++YP CD+ +DG IV Sbjct: 590 MRNVKREEILTDLTCPRCNQGQLAVKFGRNGEFLACNRYPECDFTSDFHRDSDGRIVLDA 649 Query: 57 ---KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-------PDETAITC 106 +C CG ++L++ RFG F+GC YPEC++T +DK P T +TC Sbjct: 650 PASPETSDVLCDVCGRPMILKKSRFGPFLGCSGYPECKNTRRLDKQGKPAPLPKATGVTC 709 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN-------FKPIAGEC--PECHYPLLIE 157 P+C G L++RR ++G+ F C+RYP+C + +N + P A E P+ P + Sbjct: 710 PKCGQGELLERRGKFGRPFFGCNRYPKCDYLVNSLDEVAHYTPDANEASKPQAEEPTATD 769 Query: 158 KKTAQGVKHF 167 K K Sbjct: 770 AKATPARKRV 779 >UniRef50_C4L7Y8 DNA topoisomerase type IA zn finger domain protein n=4 Tax=Gammaproteobacteria RepID=C4L7Y8_TOLAT Length = 190 Score = 168 bits (426), Expect = 7e-41, Method: Composition-based stats. Identities = 78/173 (45%), Positives = 105/173 (60%), Gaps = 4/173 (2%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + CP+CG L +R KHG FLGC YP C ++RPL+ + I K+LE CP CG Sbjct: 18 KEYRLCPECGGALSLRRSKHGLFLGCENYPDCQFMRPLQQ-QNVLIEKILEDSSCPECGK 76 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELID---KPDETAITCPQCRTGHLVQRRSRYGKTFH 126 L +++GRFG+FIGC YPEC H E + CP C+ G L + SRYGKTF+ Sbjct: 77 LLAIKKGRFGLFIGCTGYPECSHIETNNTTLADTSLLPDCPVCQQGQLQAKTSRYGKTFY 136 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 +C YP+C++AIN KPIA CP+C + LL+EK+T QG++ C K C + Sbjct: 137 ACSNYPKCKYAINDKPIAKACPQCGFSLLVEKRTRQGIRFCCPQKDCNYSAES 189 Score = 87.8 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + + + SCP+CG L I+ G+ G F+GC+ YP C ++ + + + Sbjct: 58 QNVLIEKILEDSSCPECGKLLAIKKGRFGLFIGCTGYPECSHI----ETNNTTLADTSLL 113 Query: 62 QVCPAC-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 CP C L + R+G F C NYP+C++ A CPQC LV++R+ Sbjct: 114 PDCPVCQQGQLQAKTSRYGKTFYACSNYPKCKYAIND---KPIAKACPQCGFSLLVEKRT 170 Query: 120 RYGKTFHSCDRYPECQFA 137 R G F C +C ++ Sbjct: 171 RQGIRF--CCPQKDCNYS 186 Score = 42.4 bits (98), Expect = 0.008, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 13/95 (13%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI-------- 143 T D+ CP+C ++R F C+ YP+CQF + Sbjct: 9 FTAQEHALDKEYRLCPECGGALSLRR--SKHGLFLGCENYPDCQFMRPLQQQNVLIEKIL 66 Query: 144 -AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 CPEC LL KK G+ C +C Sbjct: 67 EDSSCPECGK-LLAIKKGRFGLFIGCTGYPECSHI 100 >UniRef50_C6ALU6 DNA topoisomerase I n=3 Tax=Pasteurellaceae RepID=C6ALU6_AGGAN Length = 194 Score = 166 bits (419), Expect = 4e-40, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 113/183 (61%), Gaps = 4/183 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + ++ E CP+CGA L I+ GK G FLGCS YP CDY++PL++S + +K+LE Sbjct: 13 MNQPLFQHTKHEEHCPQCGALLQIKQGKKGLFLGCSAYPQCDYLKPLQASLEVKTLKILE 72 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHT--ELIDKPDETAITCPQCRTGHLVQRR 118 Q CP CG L L+QG FGMFIGC NYP+C E + E + CP+C+ G LV RR Sbjct: 73 -QTCPQCGHLLALKQGHFGMFIGCSNYPDCHFVVHEEAEDEMEEHVPCPECKEGQLVARR 131 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPL-LIEKKTAQGVKHFCASKQCGKPV 177 R GK F++C+R+P C+F++ KP +CP+CH L L++K+ + C +K C Sbjct: 132 GRAGKLFYACNRFPHCKFSVPTKPYLVDCPQCHGNLALLKKQQGEQRTWLCVNKTCRHIF 191 Query: 178 SAE 180 + E Sbjct: 192 TTE 194 >UniRef50_A1SR33 DNA topoisomerase, type IA, zn finger domain protein n=2 Tax=Psychromonas RepID=A1SR33_PSYIN Length = 187 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 83/175 (47%), Positives = 113/175 (64%), Gaps = 7/175 (4%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 + E CP+C +EL IR+ K G FLGCS YP C Y+RPL ++ I KVL G C Sbjct: 11 HHKKTKELCPECASELHIRNSKQGIFLGCSNYPECKYLRPLHEKSE--IEKVLPGTRCAL 68 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA-----ITCPQCRTGHLVQRRSRY 121 CG VL+QG++G+FIGC YPEC HTE + + E A + CP C+ GHL++R SR+ Sbjct: 69 CGKEQVLKQGKYGLFIGCSAYPECSHTEQLSEKKEIADEKESVPCPSCKNGHLIKRHSRF 128 Query: 122 GKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 GK F++CD YP C++A+N KP+ CP+CH+P+L+E+KTA + C K CG Sbjct: 129 GKIFYACDNYPSCKYAVNDKPVNQFCPDCHWPILVERKTASTFRIICPKKGCGYR 183 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 KS + V C CG E V++ GK+G F+GCS YP C + L + I E Sbjct: 53 EKSEIEKVLPGTRCALCGKEQVLKQGKYGLFIGCSAYPECSHTEQLSEKKE--IADEKES 110 Query: 62 QVCPAC-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 CP+C +L+ R RFG F C NYP C++ ++ CP C LV+R++ Sbjct: 111 VPCPSCKNGHLIKRHSRFGKIFYACDNYPSCKYAVNDKPVNQF---CPDCHWPILVERKT 167 >UniRef50_P46494 Uncharacterized protein HI0656.1 n=27 Tax=Pasteurellaceae RepID=Y656A_HAEIN Length = 178 Score = 164 bits (414), Expect = 2e-39, Method: Composition-based stats. Identities = 82/180 (45%), Positives = 110/180 (61%), Gaps = 3/180 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M +S + E CP+CGA L I+ GK G FLGCS YP CDY+RPL+ S H V Sbjct: 1 MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRS--EHKVLKTL 58 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP CG L L+QG FGMFIGC +YPEC+ + E ITCP+C+TGHL+ RR R Sbjct: 59 DEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLISRRGR 118 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPL-LIEKKTAQGVKHFCASKQCGKPVSA 179 GK F+ CD +P+C+F++ KP + CP CH+PL L++ + + CA+K C Sbjct: 119 QGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ 178 >UniRef50_A8RBU5 DNA topoisomerase n=9 Tax=Bacteria RepID=A8RBU5_9FIRM Length = 718 Score = 163 bits (413), Expect = 2e-39, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 82/140 (58%), Gaps = 12/140 (8%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M K L R E CP+CG+ELV R G++G F+ C +P+C Y + + + Sbjct: 565 MEKKEL--ERTGELCPECGSELVYRVGRYGKFISCINFPSCRYTKSEEEEEN------AS 616 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI---DKPDETAITCPQCRTGHLVQR 117 +VCP CG+ +V+++GR+G F+ C NYP C++ + ++P T CP+C LV+R Sbjct: 617 DEVCPHCGSKMVMKKGRYGSFLACSNYPTCKYIKNNKPKEEPVPTGENCPECGHP-LVKR 675 Query: 118 RSRYGKTFHSCDRYPECQFA 137 +SR+G TF C YP+C++ Sbjct: 676 KSRFGTTFVGCSNYPKCRYI 695 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 10/135 (7%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP-DETAITCPQ 108 G++CP CG+ LV R GR+G FI CIN+P C +T+ ++ + + CP Sbjct: 563 EHMEKKELERTGELCPECGSELVYRVGRYGKFISCINFPSCRYTKSEEEEENASDEVCPH 622 Query: 109 CRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE------CPECHYPLLIEKKTAQ 162 C + +V ++ RYG +F +C YP C++ N KP CPEC +PL+ K Sbjct: 623 CGS-KMVMKKGRYG-SFLACSNYPTCKYIKNNKPKEEPVPTGENCPECGHPLVKRKSRFG 680 Query: 163 GVKHFCAS-KQCGKP 176 C++ +C Sbjct: 681 TTFVGCSNYPKCRYI 695 >UniRef50_B0BQ81 Conserved DNA topoisomerase I-related protein n=3 Tax=Pasteurellaceae RepID=B0BQ81_ACTPJ Length = 177 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 100/177 (56%), Gaps = 3/177 (1%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S + + E CP+CG+ L I+ GK G FLGCS YP CDY++ L + ++ Sbjct: 2 SIFKSTKQVELCPECGSALQIKRGKQGLFLGCSSYPQCDYIKSLHQTNRVIKDLT---EI 58 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 CP CG L L+QG FG+FIGC +YPEC T + ++ CP+C+T LV R+ R GK Sbjct: 59 CPECGHFLQLKQGNFGIFIGCSHYPECHFTVHDEAEEQEEFDCPECKTHKLVARKGRSGK 118 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 TF+ C +P C+F + KPIA CP+C ++ KK + CA+K C S E Sbjct: 119 TFYGCSGFPNCKFTLASKPIAKTCPQCQCSIVTLKKQRGKSMYLCANKSCQYLFSEE 175 >UniRef50_Q15ZX8 DNA topoisomerase, type IA, zn finger n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15ZX8_PSEA6 Length = 186 Score = 162 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 1/161 (0%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C A L +R K+G F+GCS YP C+Y +PL S D + V+EG CP C + LV+R Sbjct: 21 CPVCNAPLQLRHSKNGAFIGCSDYPKCEYSKPLHDS-DNTELTVIEGSHCPECESELVIR 79 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +GR+GM+I C N+PEC + + D + CP C GHL +R ++YGK F+ CD+YP+C Sbjct: 80 KGRYGMYIACSNFPECHYVKSNKTQDTDKVECPSCHKGHLTKRANKYGKNFYPCDQYPQC 139 Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 +A+NF P+A CP+C +P++ EKK A G+ C ++CG Sbjct: 140 HYALNFTPVAHACPKCAWPVMQEKKAAAGLIWQCPERKCGY 180 Score = 69.7 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 12/121 (9%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 TV CP+C +ELVIR G++G ++ CS +P C YV+ K+ + CP+ Sbjct: 61 LTVIEGSHCPECESELVIRKGRYGMYIACSNFPECHYVKSNKTQDTDKVE-------CPS 113 Query: 67 CG-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 C +L R ++G F C YP+C + A CP+C + ++++ G Sbjct: 114 CHKGHLTKRANKYGKNFYPCDQYPQCHYALNF---TPVAHACPKCAWPVMQEKKAAAGLI 170 Query: 125 F 125 + Sbjct: 171 W 171 >UniRef50_Q0HPA2 DNA topoisomerase, type IA, zn finger domain protein n=11 Tax=Alteromonadales RepID=Q0HPA2_SHESM Length = 187 Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats. Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 2/168 (1%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + E CP+CG+EL ++ KHG F+GC+ YP C Y RPL + +V+EG CP CG Sbjct: 17 EKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQ-HESIETQVIEGSKCPECG 75 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDET-AITCPQCRTGHLVQRRSRYGKTFHS 127 L ++ GRFG+FIGC YP C H E D+ + + CP+C+TG L R SR+GK+F++ Sbjct: 76 HELAVKSGRFGIFIGCTQYPSCTHIERPDQESDKPEVACPECKTGKLEHRTSRFGKSFYA 135 Query: 128 CDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 C YP+C+F +N+ P+A CP C + +L+E+K A G++ C K C Sbjct: 136 CSAYPKCKFIVNYPPVAETCPSCGFGILVERKGAAGMRLECPQKSCKY 183 Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 +S V CP+CG EL ++SG+ G F+GC+QYP+C ++ +D V Sbjct: 59 ESIETQVIEGSKCPECGHELAVKSGRFGIFIGCTQYPSCTHIERPDQESDKPEVA----- 113 Query: 63 VCPACG-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP C L R RFG F C YP+C+ ET CP C G LV+R+ Sbjct: 114 -CPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAET---CPSCGFGILVERKGA 169 Query: 121 YG 122 G Sbjct: 170 AG 171 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 14/99 (14%) Query: 1 MAKSALFTVRNNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKV 58 + + + + +CP+C +L R+ + G F CS YP C ++ A+ Sbjct: 100 IERPDQESDKPEVACPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAE------ 153 Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELI 96 CP+CG LV R+G GM + C C++ + Sbjct: 154 ----TCPSCGFGILVERKGAAGMRLECP-QKSCKYKRAL 187 >UniRef50_Q67PC7 DNA topoisomerase n=3 Tax=Bacteria RepID=Q67PC7_SYMTH Length = 735 Score = 157 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 4/124 (3%) Query: 54 HIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGH 113 + + C CG +V++ GRFG F+ C +PEC+ T+ I +ET +TCP C TG Sbjct: 602 ELEDEVSDVPCEKCGRLMVVKHGRFGKFLACPGFPECKSTKPI--LEETGVTCPACGTGR 659 Query: 114 LVQRRSRYG-KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASK 171 +V+R+S+ G + F+ C YP+C F KP+ CPEC P L+EK+ + G+ H C Sbjct: 660 IVERKSKKGGRRFYGCTNYPDCNFVSWEKPVNRLCPECGAPYLVEKRIKELGLSHVCKQP 719 Query: 172 QCGK 175 CG Sbjct: 720 DCGY 723 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 16/145 (11%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 L ++ C KCG +V++ G+ G FL C +P C +P+ G C Sbjct: 602 ELEDEVSDVPCEKCGRLMVVKHGRFGKFLACPGFPECKSTKPILEE---------TGVTC 652 Query: 65 PACG-ANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 PACG +V R+ + G F GC NYP+C + CP+C +LV++R + Sbjct: 653 PACGTGRIVERKSKKGGRRFYGCTNYPDCNF---VSWEKPVNRLCPECGAPYLVEKRIKE 709 Query: 122 GKTFHSCDRYPECQFAINFKPIAGE 146 H C + P+C + + + Sbjct: 710 LGLSHVCKQ-PDCGYVEPVESMEEV 733 >UniRef50_Q1PYZ6 DNA topoisomerase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYZ6_9BACT Length = 773 Score = 157 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 11/186 (5%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M ++ C C +VIR G+HG F GCS +P C PL + + Sbjct: 573 MKSVKGTPEESDRICNLCSKPMVIRWGRHGKFFGCSAFPECKNTMPLDEKGEAAPPETS- 631 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI----DKPDETAITCPQCRTGHLVQ 116 Q C CG+ ++++ R G F+ C YP C++T+ + K + T C +C + +V Sbjct: 632 DQACEKCGSPMIIKTSRHGKFMACSAYPNCKNTKSLTGETTKVEPTNEKCEKCGSP-MVI 690 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECP--ECHYPLLIEKKTAQGVKHFCAS-KQC 173 R S+ G+ F C YP+C+ + P +CP EC L+ G+ C+ C Sbjct: 691 RFSKKGR-FMGCSGYPKCRNIKSL-PTGIKCPRDECGGDLIQRYSKKGGIFFGCSKYPDC 748 Query: 174 GKPVSA 179 Sbjct: 749 DYISKE 754 Score = 154 bits (388), Expect = 2e-36, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 8/139 (5%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 ++++C KCG+ ++I++ +HG F+ CS YP C + L + C CG+ Sbjct: 631 SDQACEKCGSPMIIKTSRHGKFMACSAYPNCKNTKSLTGETTKVEP---TNEKCEKCGSP 687 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQRRSRYGKTFHSCD 129 +V+R + G F+GC YP+C + + + T I CP+ G L+QR S+ G F C Sbjct: 688 MVIRFSKKGRFMGCSGYPKCRNIKSL----PTGIKCPRDECGGDLIQRYSKKGGIFFGCS 743 Query: 130 RYPECQFAINFKPIAGECP 148 +YP+C + PIAGE P Sbjct: 744 KYPDCDYISKELPIAGEEP 762 >UniRef50_D1BMP2 DNA topoisomerase n=6 Tax=Firmicutes RepID=D1BMP2_VEIPT Length = 791 Score = 156 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 4/121 (3%) Query: 54 HIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGH 113 I + ++C C + +V + GR+G F+ C N+PEC++T+ I T +TCP+C+ G Sbjct: 636 EIASMESDEICELCNSPMVYKFGRYGKFLACSNFPECKNTKPITVG--TGVTCPKCKEGE 693 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGV-KHFCASKQ 172 +V+R+SR G+ F+ C+RYP+C F + KP C C +++EK G K FC+++ Sbjct: 694 IVERKSRRGRIFYGCNRYPQCDFTLWDKPTHDFCETCGS-IMVEKTYKNGTVKKFCSNET 752 Query: 173 C 173 C Sbjct: 753 C 753 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 + ++ ++E C C + +V + G++G FL CS +P C +P + V G C Sbjct: 636 EIASMESDEICELCNSPMVYKFGRYGKFLACSNFPECKNTKP---------ITVGTGVTC 686 Query: 65 PAC-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 P C +V R+ R G F GC YP+C+ T T C C + +V++ + G Sbjct: 687 PKCKEGEIVERKSRRGRIFYGCNRYPQCDFTLWD---KPTHDFCETCGS-IMVEKTYKNG 742 Query: 123 KTFHSCDR 130 C Sbjct: 743 TVKKFCSN 750 >UniRef50_C9LSJ2 DNA topoisomerase n=3 Tax=Veillonellaceae RepID=C9LSJ2_9FIRM Length = 836 Score = 155 bits (391), Expect = 7e-37, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 75/126 (59%), Gaps = 3/126 (2%) Query: 52 DGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT 111 + I + + +C CG N+V++QGR+G F+ C +P+C +T+ + K +T + CP+C Sbjct: 678 EVEIPEEVSDVICEKCGRNMVVKQGRYGKFLACPGFPDCRNTKPLLK--DTGVPCPKCG- 734 Query: 112 GHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASK 171 G +V+RRSR G+ F+ C+ YP C + +P+ +CPEC +L + + +C+++ Sbjct: 735 GRIVERRSRRGQAFYGCENYPACDYVTWDQPLTEKCPECGAFMLRHRYKNGRILPYCSNE 794 Query: 172 QCGKPV 177 +C + Sbjct: 795 ECKTRI 800 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 16/150 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + ++ C KCG +V++ G++G FL C +P C +PL Sbjct: 676 IGEVEIPEEVSDVICEKCGRNMVVKQGRYGKFLACPGFPDCRNTKPLLKD---------T 726 Query: 61 GQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G CP CG +V R+ R G F GC NYP C++ E CP+C L R Sbjct: 727 GVPCPKCGGRIVERRSRRGQAFYGCENYPACDYVTWDQPLTE---KCPECGAFMLRHRY- 782 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPE 149 + G+ C EC+ I PI E + Sbjct: 783 KNGRILPYCSN-EECKTRI-DHPINKEIEK 810 >UniRef50_D1C7I9 DNA topoisomerase n=8 Tax=Bacteria RepID=D1C7I9_SPHTD Length = 769 Score = 152 bits (385), Expect = 4e-36, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 54 HIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGH 113 + +VC CG +V++ GR+G F+ C +PEC + + + + +TCPQC G Sbjct: 645 KVADEPTDEVCEKCGRPMVIKLGRYGRFLACSGFPECRNARPLLQ--KIGVTCPQCGEGD 702 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 +VQRR++ G+ F+ C RYP+C F+ KP CP+C L+ +G C+++ C Sbjct: 703 IVQRRTKKGRVFYGCSRYPDCNFSSWEKPTGEPCPQCGGVLV----ETRGGTVRCSTQGC 758 Query: 174 GKPVS 178 + Sbjct: 759 QYRAT 763 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 20/138 (14%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + +E C KCG +VI+ G++G FL CS +P C RPL Sbjct: 641 IGRVKVADEPTDEVCEKCGRPMVIKLGRYGRFLACSGFPECRNARPLLQKI--------- 691 Query: 61 GQVCPACG-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP CG ++V R+ + G F GC YP+C + T CPQC G LV+ R Sbjct: 692 GVTCPQCGEGDIVQRRTKKGRVFYGCSRYPDCNFS---SWEKPTGEPCPQCG-GVLVETR 747 Query: 119 SRYGKTFHSCDRYPECQF 136 C CQ+ Sbjct: 748 GGT----VRCS-TQGCQY 760 >UniRef50_C9RBU3 DNA topoisomerase n=2 Tax=Bacteria RepID=C9RBU3_AMMDK Length = 686 Score = 151 bits (382), Expect = 9e-36, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 51 ADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR 110 + CP CG +V + GR+G F+ C YPEC+ + P T + CP+C Sbjct: 563 EKVSLPDTFTDISCPRCGCPMVKKTGRYGEFLACSGYPECQ----MRMPVGTGVKCPRCG 618 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS 170 G LV+RRS+ G+ F+ C+RYPEC F + +P+ CPEC L++ + + + C + Sbjct: 619 -GELVKRRSKKGRYFYGCNRYPECNFVVWSEPVPEPCPECGS-LMVRRGRGKKKRVICTN 676 Query: 171 KQCGKPVSAE 180 + CG E Sbjct: 677 ESCGYQRLEE 686 Score = 114 bits (285), Expect = 2e-24, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 60/131 (45%), Gaps = 17/131 (12%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + K +L + SCP+CG +V ++G++G FL CS YP C P V Sbjct: 562 IEKVSLPDTFTDISCPRCGCPMVKKTGRYGEFLACSGYPECQMRMP-----------VGT 610 Query: 61 GQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G CP CG LV R+ + G F GC YPEC + E CP+C G L+ RR Sbjct: 611 GVKCPRCGGELVKRRSKKGRYFYGCNRYPECNFVVWSEPVPE---PCPEC--GSLMVRRG 665 Query: 120 RYGKTFHSCDR 130 R K C Sbjct: 666 RGKKKRVICTN 676 >UniRef50_Q9KA23 DNA topoisomerase 1 n=107 Tax=Bacteria RepID=TOP1_BACHD Length = 690 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 5/133 (3%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 + + I G++C CG +V + GR+G F+ C N+P+C +T+ I K E + C Sbjct: 562 EEEMKEVEIKDEPTGEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVK--EIGVKC 619 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 P+C G +V+R+S+ + F+ C++YPEC F KPIA CP+C L+EK+T + V+ Sbjct: 620 PKCEKGEIVERKSKKRRVFYGCNQYPECDFVSWDKPIARSCPKCSS-YLVEKRTKKQVQV 678 Query: 167 FCASKQCGKPVSA 179 C+S C A Sbjct: 679 QCSS--CDYKEEA 689 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 19/138 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + + E C KCG E+V + G++G F+ CS +P C +P+ Sbjct: 565 MKEVEIKDEPTGEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVKEI--------- 615 Query: 61 GQVCPAC--GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP C G + + + +F GC YPEC+ + A +CP+C + +LV++R Sbjct: 616 GVKCPKCEKGEIVERKSKKRRVFYGCNQYPECDF---VSWDKPIARSCPKCSS-YLVEKR 671 Query: 119 SRYGKTFHSCDRYPECQF 136 ++ + C C + Sbjct: 672 TKK-QVQVQCS---SCDY 685 >UniRef50_B0MRI8 DNA topoisomerase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRI8_9FIRM Length = 713 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 5/131 (3%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 I VC CG +V++ G +G F+GC +PEC++T+ I +ET Sbjct: 576 EKDMEGKRVKIPDEPTDIVCDKCGKPMVIKIGPYGKFLGCSGFPECKNTKRI--VNETGG 633 Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGV 164 CP C G ++ ++S+ GK F C+ Y +C F P+ +CP+C L KK + Sbjct: 634 LCPHCG-GKMLAKKSKKGKPFFGCENYKDCNFMTWDTPLEDKCPKCGSTLF--KKVGKQG 690 Query: 165 KHFCASKQCGK 175 + +CA CG Sbjct: 691 QVYCAKDGCGY 701 Score = 108 bits (270), Expect = 9e-23, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 14/124 (11%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 + + + C KCG +VI+ G +G FLGCS +P C + + + G Sbjct: 583 RVKIPDEPTDIVCDKCGKPMVIKIGPYGKFLGCSGFPECKNTKRIVNE---------TGG 633 Query: 63 VCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 +CP CG ++ ++ + G F GC NY +C ++ CP+C + L ++ + Sbjct: 634 LCPHCGGKMLAKKSKKGKPFFGCENYKDCNFMTWDTPLED---KCPKCGS-TLFKKVGKQ 689 Query: 122 GKTF 125 G+ + Sbjct: 690 GQVY 693 >UniRef50_B2KBN6 DNA topoisomerase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN6_ELUMP Length = 765 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 12/143 (8%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 ++E CP CG+ +VIR + G +L CS YP C L SS + +V E + C CG Sbjct: 611 KPSDEKCPLCGSPMVIRRSRFGEYLACSTYPECKGKINLTSSGEKLAPEVTE-EKCEKCG 669 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDK---------PDETAITCPQCRTGHLVQRRS 119 + +V+R GR G F+ C +P+C++T ID P ET I C +C L+ R S Sbjct: 670 SPMVIRSGRRGKFMACSAFPKCKNTFSIDASGNKVASSGPIETKIKCEKCGKPMLL-RAS 728 Query: 120 RYGKTFHSCDRYPECQFAINFKP 142 + G+ F C YP+C+ ++ P Sbjct: 729 KRGE-FLGCSGYPKCKTIVSVSP 750 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG--HIVKVLEGQVCPACG 68 E C KCG+ +VIRSG+ G F+ CS +P C + +S + + C CG Sbjct: 661 TEEKCEKCGSPMVIRSGRRGKFMACSAFPKCKNTFSIDASGNKVASSGPIETKIKCEKCG 720 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 ++LR + G F+GC YP+C+ + + I Sbjct: 721 KPMLLRASKRGEFLGCSGYPKCKTIVSVSPEEIAKIKK 758 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 22/149 (14%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK------PDET 102 + CP CG+ +V+R+ RFG ++ C YPEC+ + P+ T Sbjct: 602 DKDMQRAAPKPSDEKCPLCGSPMVIRRSRFGEYLACSTYPECKGKINLTSSGEKLAPEVT 661 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA----------INFKPIAG--ECPEC 150 C +C + +V R R GK F +C +P+C+ + PI +C +C Sbjct: 662 EEKCEKCGSP-MVIRSGRRGK-FMACSAFPKCKNTFSIDASGNKVASSGPIETKIKCEKC 719 Query: 151 HYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 P+L+ + + +G C+ +C VS Sbjct: 720 GKPMLL-RASKRGEFLGCSGYPKCKTIVS 747 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 + C KCG +++R+ K G FLGCS YP C + + I K E + Sbjct: 710 IETKIKCEKCGKPMLLRASKRGEFLGCSGYPKCKTIVSVSPEEIAKIKKEHEAE 763 >UniRef50_B9L0B0 DNA topoisomerase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0B0_THERP Length = 744 Score = 148 bits (374), Expect = 6e-35, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 ++ + G+VC CG +V+++ RFG F+ C +PEC++ + ++ + C Sbjct: 610 EQTMERVRLADQPSGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPL--LEKIGVRC 667 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 PQC G +V RRSR G+TF+ C RYP+C F +P CP+C L++ + Q Sbjct: 668 PQCGEGEIVVRRSRKGRTFYGCSRYPDCDFVSWERPTGERCPQCGGVLVVSVRRGQESVR 727 Query: 167 FCASKQCGKPVSAE 180 C+S C + E Sbjct: 728 -CSS--CSYRPAEE 738 Score = 118 bits (295), Expect = 9e-26, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 23/150 (15%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + L + E C CG +VI+ + G FL CS +P C RPL Sbjct: 613 MERVRLADQPSGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLLEKI--------- 663 Query: 61 GQVCPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP CG +V+R+ R G F GC YP+C+ + T CPQC ++ Sbjct: 664 GVRCPQCGEGEIVVRRSRKGRTFYGCSRYPDCDF---VSWERPTGERCPQCGG--VLVVS 718 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECP 148 R G+ C C + +P + P Sbjct: 719 VRRGQESVRCS---SCSY----RPAEEKAP 741 >UniRef50_Q4L5V2 DNA topoisomerase 1 n=155 Tax=Firmicutes RepID=TOP1_STAHJ Length = 689 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 3/131 (2%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 + I G+ C CG+ +V++ GR+G F+ C N+P+C +T+ I K +TC Sbjct: 560 EEEMEKVEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTKAIVK--TIGVTC 617 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 P+C+ G +V+R+S+ + F+ C YPEC F KP+ +CP+C++ L+E K + + Sbjct: 618 PKCKDGDVVERKSKKNRLFYGCSNYPECDFISWDKPVGRDCPKCNH-YLMEHKKGRSSQV 676 Query: 167 FCASKQCGKPV 177 C++ + V Sbjct: 677 ICSNCDYKEEV 687 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 19/138 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M K + E C CG+ +VI+ G++G F+ CS +P C + Sbjct: 563 MEKVEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNT---------KAIVKTI 613 Query: 61 GQVCPAC--GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP C G + + + +F GC NYPEC+ CP+C + ++ Sbjct: 614 GVTCPKCKDGDVVERKSKKNRLFYGCSNYPECDFISWD---KPVGRDCPKCNHYLMEHKK 670 Query: 119 SRYGKTFHSCDRYPECQF 136 R + C C + Sbjct: 671 GRSSQ--VICSN---CDY 683 >UniRef50_C1SMY2 DNA topoisomerase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY2_9BACT Length = 782 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 35/205 (17%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD------GHI 55 K ++ CP C +L I+ G++G F+ C+ YP C + + D Sbjct: 564 EKQFSANLKIEMKCPVCEKDLTIKYGRNGNFVACTSYPECKFTSNYERLEDGSFKLVPKE 623 Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL-----------IDKPDETAI 104 G C CG LV ++ RFG + C YPEC++ + + +E Sbjct: 624 EDKPSGIECEKCGKELVFKKTRFGEVLACPGYPECKNIKNYVTLPDGEIKILAAGEEIGT 683 Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------------PIAG--ECPEC 150 CP+C G + + F C YP+C F N + + +C +C Sbjct: 684 PCPKCEAG--LTIKGGRNGMFIGCKNYPDCDFTANMEVNEQGDIIPKYDKVDENVKCEKC 741 Query: 151 HYPLLIEKKTAQGVKHFCAS-KQCG 174 P+++ KK+ +G C +C Sbjct: 742 GKPMVL-KKSRRGKFFACTGYPECK 765 Score = 102 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 4/97 (4%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK----V 58 K CPKC A L I+ G++G F+GC YP CD+ ++ + G I+ V Sbjct: 673 KILAAGEEIGTPCPKCEAGLTIKGGRNGMFIGCKNYPDCDFTANMEVNEQGDIIPKYDKV 732 Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 E C CG +VL++ R G F C YPEC++ + Sbjct: 733 DENVKCEKCGKPMVLKKSRRGKFFACTGYPECKNAKS 769 Score = 85.5 bits (210), Expect = 8e-16, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 31/167 (18%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 + L+ + + CP C +L ++ GR G F+ C +YPEC+ T ++ ++ Sbjct: 555 KFKPELEKAEKQFSANLKIEMKCPVCEKDLTIKYGRNGNFVACTSYPECKFTSNYERLED 614 Query: 102 -------------TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-------- 140 + I C +C LV +++R+G+ +C YPEC+ N+ Sbjct: 615 GSFKLVPKEEDKPSGIECEKCGK-ELVFKKTRFGEV-LACPGYPECKNIKNYVTLPDGEI 672 Query: 141 ------KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 + I CP+C L I K G+ C + C + E Sbjct: 673 KILAAGEEIGTPCPKCEAGLTI-KGGRNGMFIGCKNYPDCDFTANME 718 >UniRef50_C0QYG0 DNA topoisomerase n=2 Tax=Brachyspira RepID=C0QYG0_BRAHW Length = 716 Score = 146 bits (368), Expect = 4e-34, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 + VC CG ++ R GR+G FI C +PEC++T+ I Sbjct: 582 TATENINNMKDFFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGIS-----F 636 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQG 163 CP+C G + +RS+ G+ F+ C YP+C F KP+ CP+C ++ + +G Sbjct: 637 GVCPKCG-GDITLKRSKRGREFYGCSNYPKCDFVSWDKPLQEPCPKCGGLMVEKNIKNKG 695 Query: 164 VKHFCASKQCGK 175 + C + CG Sbjct: 696 LFKVCIKEDCGY 707 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 18/137 (13%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 F + C KCG +++ R G++G F+ CS +P C + + Sbjct: 589 NMKDFFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGISFG----------- 637 Query: 62 QVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 VCP CG ++ L++ + G F GC NYP+C+ E CP+C G +V++ + Sbjct: 638 -VCPKCGGDITLKRSKRGREFYGCSNYPKCDFVSWDKPLQE---PCPKCG-GLMVEKNIK 692 Query: 121 YGKTFHSCDRYPECQFA 137 F C + +C ++ Sbjct: 693 NKGLFKVCIK-EDCGYS 708 >UniRef50_Q2FZ32 DNA topoisomerase 1 n=260 Tax=Bacteria RepID=TOP1_STAA8 Length = 689 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 5/120 (4%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G+ C CG+ +V++ GR+G F+ C N+P+C +T+ I K + CP+C G +V+R+S+ Sbjct: 574 GEDCEICGSPMVIKMGRYGKFMACSNFPDCRNTKAIVK--SIGVKCPKCNDGDVVERKSK 631 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 + F+ C +YPEC F KPI +CP+C+ L+E K + + C++ C +A+ Sbjct: 632 KNRVFYGCSKYPECDFISWDKPIGRDCPKCN-QYLVENKKGKTTQVICSN--CDYKEAAQ 688 Score = 102 bits (255), Expect = 5e-21, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 19/131 (14%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 E C CG+ +VI+ G++G F+ CS +P C + G CP C Sbjct: 570 DEPAGEDCEICGSPMVIKMGRYGKFMACSNFPDCRNT---------KAIVKSIGVKCPKC 620 Query: 68 --GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 G + + + +F GC YPEC+ CP+C + ++ + + Sbjct: 621 NDGDVVERKSKKNRVFYGCSKYPECDFISWD---KPIGRDCPKCNQYLVENKKGKTTQ-- 675 Query: 126 HSCDRYPECQF 136 C C + Sbjct: 676 VICSN---CDY 683 >UniRef50_UPI00006DC642 hypothetical protein CdifQ_04001409 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DC642 Length = 363 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 3/131 (2%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 + + + ++C CG+N+V++ GRFG F+ C NYP+C+ T I ++ + CP+ Sbjct: 230 ENIEKVNMDEETDEICENCGSNMVIKYGRFGKFMACKNYPDCKTTRPI--MNKIGVKCPK 287 Query: 109 CRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC 168 C G ++ R+S+ GK F+ C YP C F KP C +C ++EK T K C Sbjct: 288 CEEGDIILRKSKRGKAFYGCSNYPNCDFVAWNKPTGEFCEKCGS-YMVEKVTKSETKTVC 346 Query: 169 ASKQCGKPVSA 179 ++K+C K Sbjct: 347 SNKECNKETKE 357 Score = 92.5 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 17/130 (13%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 +E C CG+ +VI+ G+ G F+ C YP C RP+ + G CP C Sbjct: 238 DEETDEICENCGSNMVIKYGRFGKFMACKNYPDCKTTRPIMNKI---------GVKCPKC 288 Query: 68 -GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 +++LR+ + G F GC NYP C+ + T C +C + ++V++ ++ Sbjct: 289 EEGDIILRKSKRGKAFYGCSNYPNCDF---VAWNKPTGEFCEKCGS-YMVEKVTKSETKT 344 Query: 126 HSCDRYPECQ 135 C EC Sbjct: 345 V-CSN-KECN 352 >UniRef50_A5D2W4 DNA topoisomerase n=4 Tax=Clostridiales RepID=A5D2W4_PELTS Length = 714 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 14/153 (9%) Query: 29 HGPFLGCSQYPACDYVRPLKSSADGHI--VKVLEGQVCPACGANLVLRQGRFGMFIGCIN 86 +GPF + GH+ + + + C CG ++V++ GR+G F+ C Sbjct: 555 YGPF---------KNTLEKAENEIGHVQVAEEVTEEKCDRCGRSMVVKVGRYGKFLACPG 605 Query: 87 YPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 +PEC T+ + +P CP+C G LV RR++ G+ F C +PEC+F +P + Sbjct: 606 FPECRSTKPLLEP--VGAKCPRC-EGELVVRRTKKGRKFLGCSNFPECEFVTWDQPSGTK 662 Query: 147 CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 CPEC ++ +K + C S+ CG +A Sbjct: 663 CPECGGLMVEKKNAGKKGFLQCVSEDCGYKKTA 695 Score = 108 bits (270), Expect = 9e-23, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 14/129 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + E C +CG +V++ G++G FL C +P C +PL Sbjct: 569 IGHVQVAEEVTEEKCDRCGRSMVVKVGRYGKFLACPGFPECRSTKPLLEPV--------- 619 Query: 61 GQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G CP C LV+R+ + G F+GC N+PECE + + CP+C G +V++++ Sbjct: 620 GAKCPRCEGELVVRRTKKGRKFLGCSNFPECEF---VTWDQPSGTKCPECG-GLMVEKKN 675 Query: 120 RYGKTFHSC 128 K F C Sbjct: 676 AGKKGFLQC 684 >UniRef50_A3WII4 Zn-finger domain associated with topoisomerase type I n=2 Tax=Idiomarina RepID=A3WII4_9GAMM Length = 172 Score = 141 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 7/169 (4%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 ++CPKCG ELV++ FLGCS YP C+Y + L+ ++ I G CP CG +L Sbjct: 2 QACPKCGRELVVKHKGQQSFLGCSGYPDCEYTQGLREQSE--IEPESLGVPCPQCGNDLQ 59 Query: 73 LRQGRFGMFIGCINYPECEHT-ELIDKPDETAITCPQCR----TGHLVQRRSRYGKTFHS 127 L+ GRFG+F+GC NYP+C+ E + ++ ++ CP+C TG +V + R GK F S Sbjct: 60 LKSGRFGLFVGCSNYPDCDFIAEDPTQREQDSVPCPECEKAGRTGRVVAKTGRSGKQFFS 119 Query: 128 CDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 CD++P C F++ P+ CPEC +PLL+ K++ + C K C Sbjct: 120 CDQFPTCDFSLPLPPVNEACPECDFPLLMRKRSQGSERLVCPQKHCDYR 168 Score = 76.7 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 +S + CP+CG +L ++SG+ G F+GCS YP CD++ + + V E Sbjct: 38 EQSEIEPESLGVPCPQCGNDLQLKSGRFGLFVGCSNYPDCDFIAEDPTQREQDSVPCPEC 97 Query: 62 QVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 + G +V + GR G F C +P C+ + + +E CP+C L+++RS Sbjct: 98 EKAGRTG-RVVAKTGRSGKQFFSCDQFPTCDFSLPLPPVNE---ACPECDFPLLMRKRS 152 >UniRef50_C0W9S2 DNA topoisomerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S2_9FIRM Length = 754 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQR 117 ++ C CG +V++ GR G F+ C +PEC +T+ ++ + CP C L+ R Sbjct: 573 IVSDVKCEKCGRMMVVKTGRHGKFLACPGFPECRNTKPYY--EKIGVACPLCG-HDLIVR 629 Query: 118 RSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 +++ G+TF+ C YPEC F KPI CP C + +L + V H C++ +C Sbjct: 630 KTKTGRTFYGCSHYPECHFTSWDKPINETCPLCGHIMLEAVQRGGKVVHHCSNPEC 685 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 15/134 (11%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + ++ C KCG +V+++G+HG FL C +P C +P G CP CG Sbjct: 573 IVSDVKCEKCGRMMVVKTGRHGKFLACPGFPECRNTKPYYEKI---------GVACPLCG 623 Query: 69 ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 +L++R+ + G F GC +YPEC T +ET CP C +++ R GK H Sbjct: 624 HDLIVRKTKTGRTFYGCSHYPECHFTSWDKPINET---CPLCG-HIMLEAVQRGGKVVHH 679 Query: 128 CDRYPECQFAINFK 141 C PEC + K Sbjct: 680 CSN-PECPNSGAKK 692 >UniRef50_D1Y390 DNA topoisomerase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y390_9BACT Length = 767 Score = 139 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 5/129 (3%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 K+ L G+ CP CG LV +QGRFG FIGC +PEC + + + K E + C Sbjct: 639 EKAPVVPPPPPELTGETCPQCGRPLVKKQGRFGDFIGCSGFPECHYIKPVQK--EIGVPC 696 Query: 107 PQCR---TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQG 163 P+C G +VQR+S+ G+TF+ C RYP+C + KP +CP C + ++ Sbjct: 697 PKCGNEHGGQVVQRKSKKGRTFYGCSRYPDCDYVSWNKPAPEKCPLCGGLMEYVGRSRTP 756 Query: 164 VKHFCASKQ 172 V CA K Sbjct: 757 VCTKCAHKG 765 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 17/115 (14%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC--- 67 E+CP+CG LV + G+ G F+GCS +P C Y++P++ G CP C Sbjct: 652 TGETCPQCGRPLVKKQGRFGDFIGCSGFPECHYIKPVQKEI---------GVPCPKCGNE 702 Query: 68 -GANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G +V R+ + G F GC YP+C++ E CP C RSR Sbjct: 703 HGGQVVQRKSKKGRTFYGCSRYPDCDYVSWNKPAPE---KCPLCGGLMEYVGRSR 754 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 23/90 (25%) Query: 9 VRNNESCPKC----GAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 CPKC G ++V R K G F GCS+YP CDYV K + + Sbjct: 690 KEIGVPCPKCGNEHGGQVVQRKSKKGRTFYGCSRYPDCDYVSWNKPAPE----------K 739 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHT 93 CP CG + ++G P C Sbjct: 740 CPLCGGLM--------EYVGRSRTPVCTKC 761 >UniRef50_UPI0000E0DBED putative DNA topoisomerase; C4 zinc finger domain protein n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0DBED Length = 193 Score = 139 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 4/159 (2%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C L IR FLGC+ YPAC+Y + L ++ I KV+ CP C L ++ Sbjct: 27 CPDCSNPLQIRYANKSAFLGCTTYPACEYKKSLTDNSITTI-KVMVDTPCPQCDQTLAIK 85 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +GR+G+F+ C+++P C I +T ++CPQC TGHL+++ ++YGK F+SC+ YP C Sbjct: 86 KGRYGLFVSCVDFPTCNFIGSIKHQTDTKVSCPQCHTGHLLEKTNKYGKKFYSCNAYPNC 145 Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 +F +N KP+A CPEC ++IE + C C Sbjct: 146 KFVLNDKPVARTCPECQSTIMIESSA---TQLHCVKLTC 181 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 12/107 (11%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 + CP+C L I+ G++G F+ C +P C+++ +K D + CP C + Sbjct: 72 DTPCPQCDQTLAIKKGRYGLFVSCVDFPTCNFIGSIKHQTDTKV-------SCPQCHTGH 124 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 L+ + ++G F C YP C+ A TCP+C++ +++ Sbjct: 125 LLEKTNKYGKKFYSCNAYPNCKFVLND---KPVARTCPECQSTIMIE 168 >UniRef50_A9BI47 DNA topoisomerase n=3 Tax=Thermotogaceae RepID=A9BI47_PETMO Length = 762 Score = 139 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 30/184 (16%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE- 60 K + ++ C KCG + + G++G +L C C + + + + G +K Sbjct: 572 NKKEILHYESDVPCEKCGKNMKLNFGRYGLYLSCE---ECKETQKIPAESFGVTIKEKLY 628 Query: 61 ------------------GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 + CP CG +L+L+ G+FG FI C NYPEC++T + Sbjct: 629 IKEYLQETLKIDKEENKIDEKCPICGGDLILKHGKFGEFIACSNYPECKYTRNVKARG-- 686 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 CP C G +V+ +S+ GKT+ C+ C +P CP C L + + Sbjct: 687 --KCPNCG-GDIVKLKSKKGKTYFKCN---SCSTMYWNEPSEYSCPNCGETLFYKTSKGK 740 Query: 163 GVKH 166 + Sbjct: 741 EKLY 744 Score = 85.5 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 32/151 (21%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI------- 96 I+ C CG N+ L GR+G+++ C EC+ T+ I Sbjct: 565 TASNNIKNKKEILHYESDVPCEKCGKNMKLNFGRYGLYLSC---EECKETQKIPAESFGV 621 Query: 97 -------------------DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 + ++ CP C G L+ + ++G+ F +C YPEC++ Sbjct: 622 TIKEKLYIKEYLQETLKIDKEENKIDEKCPICG-GDLILKHGKFGE-FIACSNYPECKYT 679 Query: 138 INFKPIAGECPECHYPLLIEKKTAQGVKHFC 168 N K G+CP C ++ K C Sbjct: 680 RNVK-ARGKCPNCGGDIVKLKSKKGKTYFKC 709 >UniRef50_D1B572 DNA topoisomerase n=7 Tax=Campylobacterales RepID=D1B572_SULD5 Length = 694 Score = 138 bits (348), Expect = 7e-32, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 13/140 (9%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA---- 103 K+ V V G++CP CG LV R+GRFG FI C YP C++T+ + K E+A Sbjct: 560 KTEIQSQKVIVFTGEMCPECGKELVRRKGRFGEFIACSTYPTCKYTQNLKKVSESAPKEK 619 Query: 104 ----ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKK 159 + CP+C G +++R SR GK F C YP+C+F N++P +CPEC Y ++ +++ Sbjct: 620 VTLSVPCPECG-GEIIERSSRRGK-FFGCGNYPKCKFISNYEPTDKKCPECGY-IMAKRE 676 Query: 160 TAQGVKHFCASKQCGKPVSA 179 + + C +C A Sbjct: 677 LRKKEIYECI--KCKHKEEA 694 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 +S V E CP+CG ELV R G+ G F+ CS YP C Y + LK ++ + + Sbjct: 564 QSQKVIVFTGEMCPECGKELVRRKGRFGEFIACSTYPTCKYTQNLKKVSESAPKEKVTLS 623 Query: 63 V-CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 V CP CG ++ R R G F GC NYP+C+ + T CP+C G+++ +R Sbjct: 624 VPCPECGGEIIERSSRRGKFFGCGNYPKCKFISNYE---PTDKKCPEC--GYIMAKRELR 678 Query: 122 GKTFHSCDRYPECQF 136 K + C +C+ Sbjct: 679 KKEIYECI---KCKH 690 >UniRef50_B9LRP1 DNA topoisomerase n=4 Tax=Halobacteriaceae RepID=B9LRP1_HALLT Length = 864 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 18/178 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + +L + CP+CG++L++R + G F+GC YP C+Y PL SS +L Sbjct: 625 QKSLKADKTLGPCPECGSDLLVRKSRQGSYFVGCDGYPDCEYTLPLPSSGK----PLLLD 680 Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQR 117 + C ++ + GR GC P+C+ E ++ DE CP+C G L + Sbjct: 681 ETCEEHELRHVKMLAGRKTFVHGC---PQCKADEADEQEDEVIGACPECGEEHGGELAIK 737 Query: 118 RSRYGKTFHSCDRYPECQFAINF------KPIAGECPECHYPLLIEKKTAQGVKHFCA 169 R R G C RYP+C +++ + C E P L + + C Sbjct: 738 RLRSGSRLVGCTRYPDCDYSLPLPRRGEIEVTDEICEEHGLPHLRVHSGDEPWELGCP 795 Score = 66.7 bits (161), Expect = 4e-10, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGEC---P 148 H + K D+T CP+C + L+ R+SR G F CD YP+C++ + Sbjct: 623 HLQKSLKADKTLGPCPECGS-DLLVRKSRQGSYFVGCDGYPDCEYTLPLPSSGKPLLLDE 681 Query: 149 ECHYPLLIEKKTAQGVKHF---CASKQCGKPVSAE 180 C L K G K F C C + E Sbjct: 682 TCEEHELRHVKMLAGRKTFVHGCPQ--CKADEADE 714 >UniRef50_Q256J1 DNA topoisomerase I-fused to SWI domain n=18 Tax=Chlamydiales RepID=Q256J1_CHLFF Length = 862 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 3 KSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKS---SADGHIVKV 58 ++ + V + C C +LV K+ F GCS+YP CD+ + + D + V+ Sbjct: 583 EAVIPRVVTDIDCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVET 642 Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-----PDETAITCPQ-CRTG 112 CP CG + +R GRFG F+GC+NYP+C T + K E I CP +G Sbjct: 643 PWDSPCPVCGGEMKVRHGRFGTFLGCLNYPKCRGTISLHKKGEEVETEEPIPCPAIGCSG 702 Query: 113 HLVQRRSRYGKTFHSCDRYPECQFAIN 139 + ++RSRY KTF+SC YP+C N Sbjct: 703 KIFKKRSRYNKTFYSCSEYPDCSVIGN 729 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 52/149 (34%), Gaps = 24/149 (16%) Query: 47 LKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHT--------ELID 97 + + I +V+ C AC LV + F GC YPEC+ D Sbjct: 578 TTAEKEAVIPRVVTDIDCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDD 637 Query: 98 KPDETAI--TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG--------EC 147 ET CP C G + R R+G TF C YP+C+ I+ C Sbjct: 638 YAVETPWDSPCPVCG-GEMKVRHGRFG-TFLGCLNYPKCRGTISLHKKGEEVETEEPIPC 695 Query: 148 PE--CHYPLLIEKKTAQGVKHFCAS-KQC 173 P C + ++ + C+ C Sbjct: 696 PAIGCSGKIFKKRSRYNKTFYSCSEYPDC 724 Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 16/100 (16%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------------ 141 E + T I C C G LV+ ++ + F+ C YPEC F + + Sbjct: 583 EAVIPRVVTDIDCSACHKGKLVKIWAK-NRYFYGCSEYPECDFKTSEEELAFNKDDYAVE 641 Query: 142 -PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 P CP C + + G C + +C +S Sbjct: 642 TPWDSPCPVCG-GEMKVRHGRFGTFLGCLNYPKCRGTISL 680 >UniRef50_B1GYR4 DNA topoisomerase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR4_UNCTG Length = 740 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 12/156 (7%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + K + + +E CP CG +VIR + FLGCS YP C L Sbjct: 569 LQKQKVQAQQTSEICPNCGKNMVIRYSRKVQFLGCSGYPECKTTLSLDKDGKIAAAPRET 628 Query: 61 GQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDK---------PDETAITCPQCR 110 C CG++L+ + G G ++ C NYPEC+ I+K P+ T I C +C Sbjct: 629 DMKCDKCGSHLIKKTGFAGKQYLSCKNYPECKTLYNINKDGNKIIYPEPEHTDIKCNKCG 688 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + ++++ + G F +C +P+C+ K Sbjct: 689 S-EMLKKIGKRG-PFLTCSAFPKCRNLQWIKTNKTP 722 Score = 99.0 bits (245), Expect = 7e-20, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 22/148 (14%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-------P 99 K+ + ++CP CG N+V+R R F+GC YPEC+ T +DK P Sbjct: 566 EKNLQKQKVQAQQTSEICPNCGKNMVIRYSRKVQFLGCSGYPECKTTLSLDKDGKIAAAP 625 Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------------IAGEC 147 ET + C +C + HL+++ GK + SC YPEC+ N +C Sbjct: 626 RETDMKCDKCGS-HLIKKTGFAGKQYLSCKNYPECKTLYNINKDGNKIIYPEPEHTDIKC 684 Query: 148 PECHYPLLIEKKTAQGVKHFCAS-KQCG 174 +C +L +K +G C++ +C Sbjct: 685 NKCGSEML-KKIGKRGPFLTCSAFPKCR 711 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 + F ++ E + + +T+ CP C ++V R SR + F C YPEC+ Sbjct: 555 YKPFKKDLSEAEKNLQKQKVQAQQTSEICPNCGK-NMVIRYSRKVQ-FLGCSGYPECKTT 612 Query: 138 INFKP----------IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 ++ +C +C L+ + A C + +C Sbjct: 613 LSLDKDGKIAAAPRETDMKCDKCGSHLIKKTGFAGKQYLSCKNYPECK 660 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 29/56 (51%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 + C KCG+E++ + GK GPFL CS +P C ++ +K++ ++ Sbjct: 680 TDIKCNKCGSEMLKKIGKRGPFLTCSAFPKCRNLQWIKTNKTPKSKTYKTVKLSEK 735 >UniRef50_Q59046 DNA topoisomerase 1 n=9 Tax=Methanococcales RepID=TOP1_METJA Length = 761 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 34/159 (21%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL-------------- 59 CPKCG +L++ K G F+GCS YP CD L I + Sbjct: 599 KCPKCGGDLILIRHKKGRFVGCSNYPECDVKYSLPDKGRIKIPNKVCDACKSPILKIGDR 658 Query: 60 -----------------EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 E ++CP CGA L+L++G +G F GC NYP+C++TE I+K + Sbjct: 659 EICINPECPLKQVEVKEEDRICPKCGAKLILKKGVYGAFYGCSNYPKCKYTEPINKKEVV 718 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CP+C G LV R ++GK F C YP+C++ K Sbjct: 719 G-KCPKCG-GDLVVREGKFGK-FVGCSNYPKCRYTEKLK 754 Score = 108 bits (270), Expect = 9e-23, Method: Composition-based stats. Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 8/100 (8%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + + CPKCGA+L+++ G +G F GCS YP C Y P+ Sbjct: 669 KQVEVKEEDRICPKCGAKLILKKGVYGAFYGCSNYPKCKYTEPINKKEVVG--------K 720 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 CP CG +LV+R+G+FG F+GC NYP+C +TE + ++ Sbjct: 721 CPKCGGDLVVREGKFGKFVGCSNYPKCRYTEKLKLNEKEE 760 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 13/89 (14%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ--FAINF----KPIA 144 ++ + +K + CP+C ++ R + F C YPEC +++ K Sbjct: 585 KNLDATNKKAKIVGKCPKCGGDLILIRHKK--GRFVGCSNYPECDVKYSLPDKGRIKIPN 642 Query: 145 GECPECHYPLLIEKKTAQGVKHFCASKQC 173 C C P+L G + C + +C Sbjct: 643 KVCDACKSPIL-----KIGDREICINPEC 666 >UniRef50_C9RG81 DNA topoisomerase I n=2 Tax=Methanocaldococcus RepID=C9RG81_METVM Length = 928 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 34/156 (21%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL-------------- 59 CPKCG +L++ K F+GCS YP CD L I + Sbjct: 757 KCPKCGGDLILIRHKKSRFVGCSNYPECDVNYSLPDKGRIKIPNKVCNACKSPILKIGDR 816 Query: 60 -----------------EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELID-KPDE 101 E ++CP CGA L+L++G +G F GC NYP+C++TE I+ K E Sbjct: 817 EICINPECPLKQVEIKEEDRICPKCGAELILKKGVYGAFYGCSNYPKCKYTEPINKKEKE 876 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 CP+C G LV R ++GK F C YP+C++ Sbjct: 877 IVGKCPKCG-GDLVVREGKFGK-FIGCSNYPKCKYT 910 Score = 112 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 6/90 (6%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + + CPKCGAEL+++ G +G F GCS YP C Y P+ + K Sbjct: 827 KQVEIKEEDRICPKCGAELILKKGVYGAFYGCSNYPKCKYTEPINKKEKEIVGK------ 880 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHT 93 CP CG +LV+R+G+FG FIGC NYP+C++T Sbjct: 881 CPKCGGDLVVREGKFGKFIGCSNYPKCKYT 910 Score = 62.4 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 13/89 (14%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF------KPIA 144 ++ + +K + CP+C ++ R + F C YPEC + K Sbjct: 743 KNLDATNKKAKIVGKCPKCGGDLILIRHKKS--RFVGCSNYPECDVNYSLPDKGRIKIPN 800 Query: 145 GECPECHYPLLIEKKTAQGVKHFCASKQC 173 C C P+L G + C + +C Sbjct: 801 KVCNACKSPIL-----KIGDREICINPEC 824 >UniRef50_Q5V1P3 DNA topoisomerase I n=1 Tax=Haloarcula marismortui RepID=Q5V1P3_HALMA Length = 1364 Score = 134 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 17/178 (9%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + +L + CPKCG ++++R + G F+GC +P C PL S+ + +VLE Sbjct: 1123 QESLKADKTLGPCPKCGEDMLVRRSRQGSYFVGCDGFPECRNTLPLPSTGE---PQVLED 1179 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQRR 118 ++ + GR GC P CE + + DE CP+C + G L + Sbjct: 1180 HCEEHDMHHVKMLAGRDTFVHGC---PRCEAEKADESEDEVIGPCPECGSEHDGDLAIKH 1236 Query: 119 SRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHF-CA 169 R G C RYP+C +++ C E P L+ + C Sbjct: 1237 LRSGSRLVGCTRYPDCDYSLPLPRNGDISVTEAFCEEHDLPELVIDADSDDPWELGCP 1294 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 7/96 (7%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE---C 147 EH + K D+T CP+C LV RRSR G F CD +PEC+ + Sbjct: 1120 EHLQESLKADKTLGPCPKCGEDMLV-RRSRQGSYFVGCDGFPECRNTLPLPSTGEPQVLE 1178 Query: 148 PECHYPLLIEKKTAQGVKHF---CASKQCGKPVSAE 180 C + K G F C + K +E Sbjct: 1179 DHCEEHDMHHVKMLAGRDTFVHGCPRCEAEKADESE 1214 >UniRef50_UPI00016C444E DNA topoisomerase I n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C444E Length = 985 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 25/195 (12%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKH--GPFLGCSQY---PACDYVRPLKSSADGHIV 56 A+ + E CPKCG ++ R G F GC+ Y P C Y++P A+ Sbjct: 702 AEMPVARELTGEKCPKCGRDMQKRYSTTTGGFFEGCTGYSADPPCKYIKPRPGEAEREGP 761 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD-------ETAITCPQC 109 V CPACG ++V + GRFG+F C P+C T + T CP+C Sbjct: 762 TV-TDIPCPACGKHMVRKVGRFGVFYTCEGAPDCPTTMNENAEGVRTVTALPTKHKCPKC 820 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAI-------NFKP--IAGECPECHYPLLIEKKT 160 +L+ + S+ GK + C +C+F KP C +C P++I K Sbjct: 821 EKHNLLLKESKAGKKYVQCP-DAKCKFISDADADGAPVKPADTGVACEKCGSPMVI-KVA 878 Query: 161 AQGVKHFCAS-KQCG 174 +G C+ +C Sbjct: 879 WRGPFLSCSGYPKCR 893 Score = 109 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 40/196 (20%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 + CP CG +V + G+ G F C P C + + + CP C + Sbjct: 764 TDIPCPACGKHMVRKVGRFGVFYTCEGAPDCPTTMNENAEGVRTVTALPTKHKCPKCEKH 823 Query: 71 -LVLRQGRFG-MFIGCINYPECEHTELID------KPDETAITCPQCRTGHLVQRRSRYG 122 L+L++ + G ++ C + +C+ D KP +T + C +C + +++ R Sbjct: 824 NLLLKESKAGKKYVQCPDA-KCKFISDADADGAPVKPADTGVACEKCGSPMVIKVAWR-- 880 Query: 123 KTFHSCDRYPECQFAIN------------FKP----------------IAGECPECHYPL 154 F SC YP+C+ A + P + CPEC PL Sbjct: 881 GPFLSCSGYPKCRNAKSINAELREKLKDILPPPQEKVEKKEDPALSVEVTETCPECGAPL 940 Query: 155 -LIEKKTAQGVKHFCA 169 L + + G C+ Sbjct: 941 KLRKSRFGPGYYLGCS 956 Score = 95.9 bits (237), Expect = 6e-19, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 24/154 (15%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRF--GMFIGCINY---PECEHTEL------ID 97 + A+ + + L G+ CP CG ++ R G F GC Y P C++ + + Sbjct: 700 ADAEMPVARELTGEKCPKCGRDMQKRYSTTTGGFFEGCTGYSADPPCKYIKPRPGEAERE 759 Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK----------PIAGEC 147 P T I CP C H+V++ R+G F++C+ P+C +N P +C Sbjct: 760 GPTVTDIPCPACGK-HMVRKVGRFG-VFYTCEGAPDCPTTMNENAEGVRTVTALPTKHKC 817 Query: 148 PECHYPLLIEKKTAQGVKHF-CASKQCGKPVSAE 180 P+C L+ K++ G K+ C +C A+ Sbjct: 818 PKCEKHNLLLKESKAGKKYVQCPDAKCKFISDAD 851 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 20/103 (19%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG-- 61 + + +C KCG+ +VI+ GPFL CS YP C + + + + +L Sbjct: 855 APVKPADTGVACEKCGSPMVIKVAWRGPFLSCSGYPKCRNAKSINAELREKLKDILPPPQ 914 Query: 62 ----------------QVCPACGANLVLRQGRFGM--FIGCIN 86 + CP CGA L LR+ RFG ++GC Sbjct: 915 EKVEKKEDPALSVEVTETCPECGAPLKLRKSRFGPGYYLGCSK 957 >UniRef50_B3EPW7 DNA topoisomerase n=12 Tax=Chlorobiaceae RepID=B3EPW7_CHLPB Length = 804 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 18/162 (11%) Query: 13 ESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC-GAN 70 E+C KCG +++I+ G FLGCS YPAC ++PL SS + G C C Sbjct: 598 ETCDKCGKGKMIIKWTASGKFLGCSSYPACKNIKPLASS---RVRPKETGIKCHGCENGR 654 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDK----------PDETAITCPQCRTGHLVQRRSR 120 +VLR GRFG F+ C YP+C +DK P ET + CP+C + R+ Sbjct: 655 MVLRNGRFGPFLACTGYPDCNTLLKLDKQRKIEPPKTPPLETDLACPKCGAPLYL--RTG 712 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 + C ++P+C+ + + + H+ ++EK + Sbjct: 713 KRGLWLGCSKFPKCRGRQAWGQLD-PAIQHHWQEIMEKHQGE 753 Score = 94.8 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 1 MAKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD---GHIV 56 +A S + C C +V+R+G+ GPFL C+ YP C+ + L Sbjct: 633 LASSRVRPKETGIKCHGCENGRMVLRNGRFGPFLACTGYPDCNTLLKLDKQRKIEPPKTP 692 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + CP CGA L LR G+ G+++GC +P+C + Sbjct: 693 PLETDLACPKCGAPLYLRTGKRGLWLGCSKFPKCRGRQA 731 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL---KSSADGHIVK 57 + + + +CPKCGA L +R+GK G +LGCS++P C + + H + Sbjct: 686 IEPPKTPPLETDLACPKCGAPLYLRTGKRGLWLGCSKFPKCRGRQAWGQLDPAIQHHWQE 745 Query: 58 VLEGQVCPACGANLVLRQG 76 ++E + + G Sbjct: 746 IMEKHQGEHPSVTIRMVDG 764 Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-------KPI 143 + + + A TC +C G ++ + + GK F C YP C+ K Sbjct: 585 RKNDPLLPQNTDAETCDKCGKGKMIIKWTASGK-FLGCSSYPACKNIKPLASSRVRPKET 643 Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 +C C ++ + G C C Sbjct: 644 GIKCHGCENGRMVLRNGRFGPFLACTGYPDCN 675 >UniRef50_A6G953 DNA topoisomerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G953_9DELT Length = 891 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 17/160 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MA + CPKCGA R G++G FL C+ YP CDY P+ + + + Sbjct: 662 MAHAKAEIQPALYKCPKCGARTCYRFGRNGRFLSCTAYPECDYAAPIDRKGRPLLPERV- 720 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD--------------ETAITC 106 V P G+++ LR GRFG F+ NY + +D+ E I C Sbjct: 721 DIVSPEDGSSMELRNGRFGKFLASENYEKGSFVLNLDRKGNIKYPAIPPLVIDVEEGIQC 780 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 +C ++R +R + C R+P+C+ + +K + E Sbjct: 781 VKCDAPLNLRRGAR--GPWLGCSRFPKCRGRLAWKTLDEE 818 >UniRef50_A8SJ74 DNA topoisomerase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ74_9FIRM Length = 703 Score = 130 bits (326), Expect = 3e-29, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 R S D I + + CP CG NLV+++ +FG FIGC +P+C + + K +T + Sbjct: 565 RSEGDSEDYKIKDEVLDEKCPQCGKNLVIKKTKFGRFIGCSGFPDCNYIKKEVK--DTGV 622 Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI-AGECPECHYPLLIEKKTAQG 163 CP+C G ++++ S+ K F+ C+ YPEC +AI KPI +C +C L+E K Sbjct: 623 KCPKCG-GRIIEKISKKRKVFYGCENYPECDYAIWDKPIADKKCEKCGK-FLVEVKNRFK 680 Query: 164 VKHFCASKQC 173 C+ + C Sbjct: 681 HALKCSDENC 690 Score = 102 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 15/136 (11%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +E CP+CG LVI+ K G F+GCS +P C+Y++ G CP CG + Sbjct: 581 DEKCPQCGKNLVIKKTKFGRFIGCSGFPDCNYIKKEVKD---------TGVKCPKCGGRI 631 Query: 72 VLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 + + + F GC NYPEC++ + C +C LV+ ++R+ K C Sbjct: 632 IEKISKKRKVFYGCENYPECDYAIWDKPIADK--KCEKCGKF-LVEVKNRF-KHALKCS- 686 Query: 131 YPECQFAINFKPIAGE 146 C F I+ K E Sbjct: 687 DENCDFEIDLKKKKNE 702 Score = 66.7 bits (161), Expect = 4e-10, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 11/94 (11%) Query: 11 NNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 CPKCG ++ + K F GC YP CDY K + + C CG Sbjct: 620 TGVKCPKCGGRIIEKISKKRKVFYGCENYPECDYAIWD---------KPIADKKCEKCGK 670 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 LV + RF + C + C+ + K Sbjct: 671 FLVEVKNRFKHALKCSDE-NCDFEIDLKKKKNEK 703 >UniRef50_C1XZ86 Zn-finger domain-containing protein (Topoisomerase type I-like) (Fragment) n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ86_9DEIN Length = 301 Score = 128 bits (322), Expect = 8e-29, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 14/162 (8%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-ANL 71 +CP CG + ++ + G FLGC+ YP C + L++ + G+ CP C L Sbjct: 13 RTCPVCGRPMEVKVSRFGQFLGCTGYPECRHTERLEAKRAAEPI----GEPCPKCHQGEL 68 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 V R GR+G FI C YPEC+++ D+ T I CP+C G +VQ+ S+ GK ++ C+ Sbjct: 69 VRRHGRYGSFISCSRYPECDYSR--DEAPSTGIECPKCHAGEIVQKISKRGKPYYRCNN- 125 Query: 132 PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C F + + C C + + K C++ C Sbjct: 126 --CDFLSFDRVLESRCSICGWNEI----QKGRDKTACSNPDC 161 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 47/126 (37%), Positives = 70/126 (55%), Gaps = 6/126 (4%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP---DETAITC 106 V L + CP CG + ++ RFG F+GC YPEC HTE ++ + C Sbjct: 1 EPFMEEVSRLPRRTCPVCGRPMEVKVSRFGQFLGCTGYPECRHTERLEAKRAAEPIGEPC 60 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG-ECPECHYPLLIEKKTAQGVK 165 P+C G LV+R RYG +F SC RYPEC ++ + P G ECP+CH +++K + +G Sbjct: 61 PKCHQGELVRRHGRYG-SFISCSRYPECDYSRDEAPSTGIECPKCHAGEIVQKISKRGKP 119 Query: 166 HF-CAS 170 ++ C + Sbjct: 120 YYRCNN 125 >UniRef50_B5YFC7 DNA topoisomerase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YFC7_DICT6 Length = 694 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 38 YPACDYVRPLKSSADGHIVKVL-EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 YP+ S G I V + CP CG LV+R+ + G + C YPEC++T+ I Sbjct: 549 YPSFKEELERVSKNFGKIQVVEKTDEFCPICGRELVIRENKHGKYYACSAYPECKYTKPI 608 Query: 97 DKPDETAITCPQCRTGHLVQRRSRY-GKTFHSCDRYPECQFAINFKPIAGECPECHYPLL 155 +E CP C G +V++++R GK F C YP C FA ++P+ +CP+C LL Sbjct: 609 Y--EEAHGKCPLCG-GIVVKKKARKTGKVFWGCINYPNCSFASPYEPLDEKCPQCGSVLL 665 Query: 156 IEKKTAQGVKHFCASKQCGKPV 177 G K C+++ C V Sbjct: 666 ----KGNGFKK-CSNENCNYIV 682 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 60/133 (45%), Gaps = 21/133 (15%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + +E CP CG ELVIR KHG + CS YP C Y +P+ A G CP CG Sbjct: 570 EKTDEFCPICGRELVIRENKHGKYYACSAYPECKYTKPIYEEAHGK---------CPLCG 620 Query: 69 ANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 +V ++ R +F GCINYP C + DE CPQC + L G F Sbjct: 621 GIVVKKKARKTGKVFWGCINYPNCSFASPYEPLDE---KCPQCGSVLL------KGNGFK 671 Query: 127 SCDRYPECQFAIN 139 C C + + Sbjct: 672 KCSN-ENCNYIVW 683 >UniRef50_D1B6D6 DNA topoisomerase I n=3 Tax=Synergistaceae RepID=D1B6D6_THEAS Length = 708 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 6/98 (6%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 S+ + L G+ CP CG L++R+GR+G FIGC YPEC+ T+ K T + CP+ Sbjct: 600 SAQRMTVPPELAGEDCPQCGRPLLIRRGRYGEFIGCSGYPECDFTKR--KETSTGVPCPK 657 Query: 109 CRTGHLVQRRSRYGK----TFHSCDRYPECQFAINFKP 142 C G +V R++ GK TF+ C RYPEC + KP Sbjct: 658 CGQGTVVARKASKGKGKGRTFYGCSRYPECDYVSWSKP 695 Score = 94.8 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 15/96 (15%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 E CP+CG L+IR G++G F+GCS YP CD+ + ++S G CP CG Sbjct: 612 GEDCPQCGRPLLIRRGRYGEFIGCSGYPECDFTKRKETS---------TGVPCPKCGQGT 662 Query: 72 VLR------QGRFGMFIGCINYPECEHTELIDKPDE 101 V+ +G+ F GC YPEC++ + Sbjct: 663 VVARKASKGKGKGRTFYGCSRYPECDYVSWSKPKGD 698 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 +G F + + P+ CPQC L+ RR RYG+ F C YPEC F Sbjct: 587 YGPFESRLQEVAASAQRMTVPPELAGEDCPQCGRP-LLIRRGRYGE-FIGCSGYPECDFT 644 Query: 138 INFKPIAG-ECPECHYPLLIEKKTAQG-----VKHFCAS-KQCGK 175 + G CP+C ++ +K ++G + C+ +C Sbjct: 645 KRKETSTGVPCPKCGQGTVVARKASKGKGKGRTFYGCSRYPECDY 689 Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 9 VRNNESCPKCGAELVIR------SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 CPKCG V+ GK F GCS+YP CDYV K DG + +V + Sbjct: 649 TSTGVPCPKCGQGTVVARKASKGKGKGRTFYGCSRYPECDYVSWSKPKGDGTVSEVRD 706 >UniRef50_O83409 DNA topoisomerase 1 n=4 Tax=Treponema RepID=TOP1_TREPA Length = 731 Score = 123 bits (308), Expect = 4e-27, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 8/134 (5%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 ++ + VC CG +V + GRFG F+ C +PEC +T+ + Sbjct: 571 TVMKDLNSMRGVFDEKTDVVCSQCGDTMVKKLGRFGFFLACGKFPECRNTQPV-----PL 625 Query: 104 ITCPQ--CRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 CP+ C G++V +++R K F+ C R+P C F +FKP CP+C L+ + Sbjct: 626 AKCPRPACD-GNIVGKKTRGRKEFYGCTRFPVCDFVTHFKPTFAVCPQCRCFLVEKSNRR 684 Query: 162 QGVKHFCASKQCGK 175 G C + +C Sbjct: 685 VGTYTACVNPECRY 698 Score = 98.6 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 16/138 (11%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 +F + + C +CG +V + G+ G FL C ++P C +P+ + P Sbjct: 582 VFDEKTDVVCSQCGDTMVKKLGRFGFFLACGKFPECRNTQPVPLAKCPR----------P 631 Query: 66 ACGANLVLRQGR-FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 AC N+V ++ R F GC +P C+ + T CPQCR LV++ +R T Sbjct: 632 ACDGNIVGKKTRGRKEFYGCTRFPVCDF---VTHFKPTFAVCPQCRCF-LVEKSNRRVGT 687 Query: 125 FHSCDRYPECQFAINFKP 142 + +C PEC++ + Sbjct: 688 YTACVN-PECRYVSPTRK 704 >UniRef50_Q12Y06 DNA topoisomerase n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12Y06_METBU Length = 780 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 6/162 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 C +C L I S G F+GC+ YP C PL + V + C GA ++ Sbjct: 610 KCNECERVLRIVSTDKGRFVGCTGYPQCKNTFPLP---KTGALAVQRSRTCKKGGAAVLK 666 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC--RTGHLVQRRSRYGKTFHSCDRY 131 ++ +G C+ + P E CP C +T + + SR+ C Sbjct: 667 VGSKYFWAVGIGPCFSCDMEKE-CYPPEIVGECPACDGQTFLITTKDSRFLGCTKRCGHT 725 Query: 132 PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C C + LL K+ + K +CA+++C Sbjct: 726 QSVPKNGRLTITDKVCEGCGWRLLRVKEQGKDAKEYCANRKC 767 >UniRef50_B8E2F6 DNA topoisomerase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2F6_DICTD Length = 696 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 8/141 (5%) Query: 38 YPACDY-VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 YPA + + + V ++CP CG+ LV+R+ + G + C YPEC++T+ I Sbjct: 551 YPAFKEELEKVSKNIGKIQVIEKTDEICPLCGSKLVIRENKNGKYYACSRYPECKYTKPI 610 Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 +E CP C + ++ + KTF C YPEC FA ++P+ +CP+C +L Sbjct: 611 Y--EEAQGRCPLCGGVVVKKKAKKTKKTFWGCINYPECSFASPYEPLNEKCPQCGSTML- 667 Query: 157 EKKTAQGVKHFCASKQCGKPV 177 G K C++K C V Sbjct: 668 ---KGNGFKK-CSNKDCNYIV 684 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 21/133 (15%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + +E CP CG++LVIR K+G + CS+YP C Y +P+ A G CP CG Sbjct: 572 EKTDEICPLCGSKLVIRENKNGKYYACSRYPECKYTKPIYEEAQGR---------CPLCG 622 Query: 69 A--NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 + F GCINYPEC + +E CPQC + L G F Sbjct: 623 GVVVKKKAKKTKKTFWGCINYPECSFASPYEPLNE---KCPQCGSTML------KGNGFK 673 Query: 127 SCDRYPECQFAIN 139 C +C + + Sbjct: 674 KCSN-KDCNYIVW 685 >UniRef50_A4P0V4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4P0V4_HAEIN Length = 154 Score = 120 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 2/125 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M +S + E CP+CGA L I+ GK G FLGCS YP CDY+RPL+ H V Sbjct: 1 MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRV--EHKVLKTL 58 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP CG L L+QG FGMFIGC +YPEC+ + E I CP+C+TGHL+ RR R Sbjct: 59 DEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKIACPECKTGHLISRRGR 118 Query: 121 YGKTF 125 GK F Sbjct: 119 QGKIF 123 Score = 80.5 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 10/113 (8%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-----CPQCRTGHLVQ 116 + CP CGA L ++QG+ G+F+GC YPEC++ + + + + CP+C G+L+Q Sbjct: 13 EYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRVEHKVLKTLDEICPKC--GNLLQ 70 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAG---ECPECHYPLLIEKKTAQGVKH 166 + F C YPEC F + + + CPEC LI ++ QG Sbjct: 71 LKQGSFGMFIGCSHYPECDFVVREESESEEKIACPECKTGHLISRRGRQGKIF 123 >UniRef50_C8WG68 DNA topoisomerase type IA central domain protein n=9 Tax=Coriobacteriaceae RepID=C8WG68_EGGLE Length = 849 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 68/173 (39%), Gaps = 24/173 (13%) Query: 15 CPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CPKCG +L +R+ + F+GC+ +P CD PL + + CP CG V Sbjct: 639 CPKCGKDLQLRASQKTRSMFIGCAGWPDCDVTYPLPKGKVEAVPEP-----CPTCGMPQV 693 Query: 73 -LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-----TGHLVQRRSRYGKTFH 126 + R CI+ P C + +PD CP C+ + Q+ R K F Sbjct: 694 KVTAFRSKPRTICID-PHCSTNQ---EPDVVVGECPACKEKGIQAKLIAQKNPRTLKRFI 749 Query: 127 SCDRYPECQFAIN------FKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C+ Y +C C C P++I TA+G C + C Sbjct: 750 RCENYDDCGTGYPLPQYGALTATEEVCEHCGAPMVI-VTTARGPWKLCPNFDC 801 Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 5/75 (6%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP-----IAGECPECHYPLLIEK 158 CP+C ++ + F C +P+C + CP C P + Sbjct: 637 GPCPKCGKDLQLRASQKTRSMFIGCAGWPDCDVTYPLPKGKVEAVPEPCPTCGMPQVKVT 696 Query: 159 KTAQGVKHFCASKQC 173 + C C Sbjct: 697 AFRSKPRTICIDPHC 711 Score = 40.5 bits (93), Expect = 0.024, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 17/131 (12%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 E CP CG V + P + P S+ V V E C G Sbjct: 682 PEPCPTCGMPQVKVTAFRSK-------PRTICIDPHCSTNQEPDVVVGECPACKEKGIQA 734 Query: 72 VLRQGRF----GMFIGCINYPECEHTELIDK---PDETAITCPQCRTGHLVQRRSRYGKT 124 L + FI C NY +C + + T C C ++ +R Sbjct: 735 KLIAQKNPRTLKRFIRCENYDDCGTGYPLPQYGALTATEEVCEHCGAPMVIVTTAR--GP 792 Query: 125 FHSCDRYPECQ 135 + C + +C Sbjct: 793 WKLCPNF-DCP 802 >UniRef50_Q18KP8 DNA topoisomerase n=6 Tax=Halobacteriaceae RepID=Q18KP8_HALWD Length = 857 Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 12/144 (8%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + ++ + CP+C +L+ R + G F+GC YP C+Y PL S+ HI++ Sbjct: 604 QRSMKADKTIGPCPQCEGDLITRKSQAGSHFIGCDSYPDCEYTLPLPSTGKPHILET--- 660 Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQR 117 VC + + G+ GC P CE ++ D TCP+C G L + Sbjct: 661 -VCDVHNLQQIKMLAGKRSFVHGC---PLCEAEAADEQADRVIGTCPECNAHADGELAIK 716 Query: 118 RSRYGKTFHSCDRYPECQFAINFK 141 R R G C RYP+C++++ Sbjct: 717 RLRSGSRLVGCTRYPDCEYSLPLP 740 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 H + K D+T CPQC G L+ R+S+ G F CD YP+C++ + Sbjct: 602 HLQRSMKADKTIGPCPQC-EGDLITRKSQAGSHFIGCDSYPDCEYTLPLPSTGKP 655 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Query: 14 SCPKC----GAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 +CP+C EL I+ + G +GC++YP C+Y PL + + +C Sbjct: 701 TCPECNAHADGELAIKRLRSGSRLVGCTRYPDCEYSLPLPRQGEIDV----TDNICDEHA 756 Query: 69 AN 70 Sbjct: 757 LP 758 >UniRef50_D2LPU9 DNA topoisomerase I n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LPU9_9EURY Length = 764 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 23/170 (13%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV- 72 CP G +L+ K + C Y + + CP CG L+ Sbjct: 602 ECPD-GGKLIYLERK--RLVVCENDGETKY-----YNLPKTGHIEFLDKKCPICGLPLIK 653 Query: 73 -LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 +R+G+ I C+N +CE+ ++ + CP+C G LV R+S+ GK F C Y Sbjct: 654 IIRRGQ-SPEIRCLN-SKCEY----NRKKDIVGKCPKCG-GDLVIRQSKNGKRFIGCSNY 706 Query: 132 PECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 P+C + P CP C PLLI +K + FC + +C Sbjct: 707 PKCDVTYSLPQRGKIIPTGEVCPYCGAPLLILRKKGKKDWKFCPNIKCEY 756 Score = 79.0 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 5/88 (5%) Query: 14 SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CPKCG +LVIR K+G F+GCS YP CD L + G+VCP CGA L+ Sbjct: 681 KCPKCGGDLVIRQSKNGKRFIGCSNYPKCDVTYSLPQRGK----IIPTGEVCPYCGAPLL 736 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPD 100 + + + +CE+ Sbjct: 737 ILRKKGKKDWKFCPNIKCEYNRRNKDEK 764 >UniRef50_Q9HM08 DNA topoisomerase 1 n=4 Tax=Thermoplasmatales RepID=TOP1_THEAC Length = 770 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 21/165 (12%) Query: 19 GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV--LRQG 76 G ++++ + + C P+C +K + L Q CP CG ++ +R+G Sbjct: 595 GKKIMVIRDRFTYTVRCED-PSCKINFRIKRNGS----ITLSDQKCPVCGLPMIKIIRKG 649 Query: 77 RFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 + I CI+ P+C + ++ +E CP G LV R+S+YGK F C YP+C Sbjct: 650 Q-SPEIKCID-PDCSY----NRENEDYGECPA-DHGRLVLRQSKYGKRFLGCSNYPKCTV 702 Query: 137 AINF------KPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 CP C P+L + + FC + QC Sbjct: 703 TYPLPQMGRITKTGEVCPYCGAPILALSRNGRK-WKFCPNMQCEY 746 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 22/138 (15%) Query: 11 NNESCPKCGAEL--VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 +++ CP CG + +IR G+ + C P C Y R + + CPA Sbjct: 631 SDQKCPVCGLPMIKIIRKGQSPE-IKCID-PDCSYNRENEDYGE-----------CPADH 677 Query: 69 ANLVLRQGRFGM-FIGCINYPECEHTELIDKPD---ETAITCPQCRTGHLVQRRSRYGKT 124 LVLRQ ++G F+GC NYP+C T + + +T CP C L SR G+ Sbjct: 678 GRLVLRQSKYGKRFLGCSNYPKCTVTYPLPQMGRITKTGEVCPYCGAPILAL--SRNGRK 735 Query: 125 FHSCDRYPECQFAINFKP 142 + C C++ KP Sbjct: 736 WKFCPNMQ-CEYNKKRKP 752 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 50/117 (42%), Gaps = 22/117 (18%) Query: 10 RNNE---SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 R NE CP LV+R K+G FLGCS YP C PL G+VCP Sbjct: 665 RENEDYGECPADHGRLVLRQSKYGKRFLGCSNYPKCTVTYPLPQMGR----ITKTGEVCP 720 Query: 66 ACGANLVL--RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CGA ++ R GR F C N +CE+ + P+ V+++ R Sbjct: 721 YCGAPILALSRNGRKWKF--CPNM-QCEYNKK---------RKPEAAVEKSVRKKGR 765 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 9/94 (9%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------IAGE 146 T+ I+ E CP ++ R R+ T C+ P C+ K + Sbjct: 578 TKGINAGQEIG-DCPFHEGKKIMVIRDRFTYT-VRCE-DPSCKINFRIKRNGSITLSDQK 634 Query: 147 CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 CP C P++ + Q + C C E Sbjct: 635 CPVCGLPMIKIIRKGQSPEIKCIDPDCSYNRENE 668 >UniRef50_Q9JN65 DNA topoisomerase 1 n=2 Tax=Mycoplasma gallisepticum RepID=TOP1_MYCGA Length = 719 Score = 107 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 9/110 (8%) Query: 46 PLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD----- 100 + V+ +EG+ CP C + LV R+GR+G F+GC N+P+C+ E ++ Sbjct: 602 NEAKTNIVKKVEYIEGKNCPNCSSQLVRREGRYGPFVGCSNFPKCKFIEKSEQKAKEIVY 661 Query: 101 ETAITCPQCRTGHLVQRRSRYGK----TFHSCDRYPECQFAINFKPIAGE 146 E + C C + + + G+ TF C +P+C++ + +P E Sbjct: 662 EEGVKCELCHAKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDE 711 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 8/102 (7%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 ++CP C ++LV R G++GPF+GCS +P C ++ KS + EG C C A Sbjct: 616 EGKNCPNCSSQLVRREGRYGPFVGCSNFPKCKFIE--KSEQKAKEIVYEEGVKCELCHAK 673 Query: 71 LVLR----QGRF--GMFIGCINYPECEHTELIDKPDETAITC 106 L+ R +GR F+GC N+P+C++T+ ++ + I Sbjct: 674 LIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDETIRD 715 Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 16/93 (17%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE--------CPECHYP 153 CP C + LV+R RYG F C +P+C+F + A E C CH Sbjct: 616 EGKNCPNCSS-QLVRREGRYG-PFVGCSNFPKCKFIEKSEQKAKEIVYEEGVKCELCHAK 673 Query: 154 LLIEKKTAQG-----VKHFCAS-KQCGKPVSAE 180 L+ +G C++ +C S E Sbjct: 674 LIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLE 706 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 2 AKSALFTVRNNESCPKCGAELVIR------SGKHGPFLGCSQYPACDYVRPLKSSADGHI 55 K+ C C A+L+ R K FLGCS +P C Y + L+ D I Sbjct: 654 QKAKEIVYEEGVKCELCHAKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDETI 713 >UniRef50_A6VXG1 DNA topoisomerase type IA zn finger domain protein n=2 Tax=Marinomonas RepID=A6VXG1_MARMS Length = 171 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKC + LV++ G +G F GC YP C+Y ++ + L CPAC + L Sbjct: 37 RCPKCESLLVLKEGANGAFWGCESYPVCNYTANNENGKPVRAKRYL----CPACQSPLRR 92 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT-GHLVQRRSRYGKTFHSCDRYP 132 + + F GC NYPEC+ T D ++ CR GH + R+ F C YP Sbjct: 93 KAFKDNAFWGCSNYPECKVTVEDDNGVPSSTKKYPCRACGHYLVRKKSKNGYFWGCITYP 152 Query: 133 ECQFAINF 140 C +N Sbjct: 153 VCTNTLND 160 Score = 79.8 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 12/130 (9%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-- 105 S D HI CP C + LVL++G G F GC +YP C +T + Sbjct: 22 DQSDDAHIKSAKIRYRCPKCESLLVLKEGANGAFWGCESYPVCNYTANNENGKPVRAKRY 81 Query: 106 -CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI------NFKPIAGECPECHYPLLIEK 158 CP C++ ++R++ F C YPEC+ + C C + L+ K Sbjct: 82 LCPACQSP--LRRKAFKDNAFWGCSNYPECKVTVEDDNGVPSSTKKYPCRACGH-YLVRK 138 Query: 159 KTAQGVKHFC 168 K+ G C Sbjct: 139 KSKNGYFWGC 148 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF---KPIAGE---CPECH 151 K + CP+C + L+ + F C+ YP C + N KP+ + CP C Sbjct: 30 KSAKIRYRCPKCES--LLVLKEGANGAFWGCESYPVCNYTANNENGKPVRAKRYLCPACQ 87 Query: 152 YPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 P L K C++ +C V + Sbjct: 88 SP-LRRKAFKDNAFWGCSNYPECKVTVEDD 116 >UniRef50_A1U3N5 DNA topoisomerase n=6 Tax=Gammaproteobacteria RepID=A1U3N5_MARAV Length = 722 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 7/99 (7%) Query: 1 MAKSALFTVRNNES------CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGH 54 MA++ + N E+ CPKC A +V R GK G F C++YPAC RPL+ Sbjct: 609 MAQAPAAGLANTETPGTAIHCPKCRAPMVEREGKFGAFFACTRYPACKGTRPLEDHQPED 668 Query: 55 IVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 + CP C + LV R+ G F GC N+P C T Sbjct: 669 GTS-QKPVPCPHCFSPLVRRKSNKGWFWGCSNFPGCRQT 706 Score = 90.9 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI------ 96 ++ ++ + CP C A +V R+G+FG F C YP C+ T + Sbjct: 608 FMAQAPAAGLANTETPGTAIHCPKCRAPMVEREGKFGAFFACTRYPACKGTRPLEDHQPE 667 Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 D + + CP C + LV+R+S G F C +P C+ ++ Sbjct: 668 DGTSQKPVPCPHCFSP-LVRRKSNKG-WFWGCSNFPGCRQTVDD 709 Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 13/93 (13%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---PIAG------ 145 + TAI CP+CR +V+R ++G F +C RYP C+ + P G Sbjct: 618 ANTETPGTAIHCPKCRAP-MVEREGKFG-AFFACTRYPACKGTRPLEDHQPEDGTSQKPV 675 Query: 146 ECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPV 177 CP C PL+ K + +G C++ C + V Sbjct: 676 PCPHCFSPLVRRK-SNKGWFWGCSNFPGCRQTV 707 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 19/50 (38%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 + T + CP C + LV R G F GCS +P C + Sbjct: 665 QPEDGTSQKPVPCPHCFSPLVRRKSNKGWFWGCSNFPGCRQTVDDHNGRP 714 >UniRef50_C4NUW5 DNA topoisomerase n=12 Tax=Gammaproteobacteria RepID=C4NUW5_ECOLX Length = 730 Score = 103 bits (256), Expect = 4e-21, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 7/106 (6%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MAK+ + C CG E+ GK+G F GC AC P + + Sbjct: 623 MAKAFEGAKPPSHECFNCGGEMHRIKGKNGFFWGCQN-EACKKTFPDNRGKPEKRIAAED 681 Query: 61 GQVCPACGANLVLRQG------RFGMFIGCINYPECEHTELIDKPD 100 CP CG+ + LR+G R F GC YP+C+ T K D Sbjct: 682 CPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGTMPFKKSD 727 Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 17/128 (13%) Query: 33 LGCSQYPACDYVRPLKSSADGHIVKVLEG-----QVCPACGANLVLRQGRFGMFIGCINY 87 C P+ + G + K EG C CG + +G+ G F GC N Sbjct: 601 WICQMVEQLKVAAPVLTKEGGAMAKAFEGAKPPSHECFNCGGEMHRIKGKNGFFWGCQNE 660 Query: 88 PECEHTELIDKPDETAIT-------CPQCRTGHLVQR----RSRYGKTFHSCDRYPECQF 136 C+ T ++ CP C + +++ + F C YP+C+ Sbjct: 661 -ACKKTFPDNRGKPEKRIAAEDCPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKG 719 Query: 137 AINFKPIA 144 + FK Sbjct: 720 TMPFKKSD 727 Score = 55.9 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 15 CPKCGAELVIRSGKHG------PFLGCSQYPACDYVRPLKSSADGH 54 CP CG+ + +R GK F GC+ YP C P K S Sbjct: 685 CPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGTMPFKKSDFMD 730 Score = 45.5 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 13/83 (15%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF---KPIAG----- 145 + + + C C + R F C C+ KP Sbjct: 625 KAFEGAKPPSHECFNCGGE--MHRIKGKNGFFWGCQN-EACKKTFPDNRGKPEKRIAAED 681 Query: 146 --ECPECHYPLLIEKKTAQGVKH 166 +CP+C P+ + K A G K Sbjct: 682 CPDCPDCGSPMRLRKGKAPGKKR 704 >UniRef50_Q6XZ01 DNA topoisomerase n=2 Tax=Spiroplasma RepID=Q6XZ01_SPIKU Length = 664 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTG 112 I G CP CG +LV R G++G FI C +P+C + I + CP+C G Sbjct: 556 EEIPVEKSGIECPECGNDLVYRYGKYGKFIACSGFPKCHY---IHQTGPKFGPCPECGVG 612 Query: 113 HLVQRRSRYGKTFHSCDRYPECQFAINFK 141 ++ + ++ + F +C YP C + ++K Sbjct: 613 EIILKFNKRRQRFKACTNYPNCNYTDSYK 641 Score = 90.5 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 12/100 (12%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + ++ CP+CG +LV R GK+G F+ CS +P C Y+ Sbjct: 556 EEIPVEKSGIECPECGNDLVYRYGKYGKFIACSGFPKCHYIHQTGPKFGP---------- 605 Query: 64 CPACG-ANLVLR-QGRFGMFIGCINYPECEHTELIDKPDE 101 CP CG ++L+ R F C NYP C +T+ + Sbjct: 606 CPECGVGEIILKFNKRRQRFKACTNYPNCNYTDSYKEEKT 645 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIE 157 +++ I CP+C LV R +YGK F +C +P+C + P G CPEC +I Sbjct: 559 PVEKSGIECPECGN-DLVYRYGKYGK-FIACSGFPKCHYIHQTGPKFGPCPECGVGEIIL 616 Query: 158 K-KTAQGVKHFCAS-KQCGKP 176 K + C + C Sbjct: 617 KFNKRRQRFKACTNYPNCNYT 637 >UniRef50_Q46AN3 DNA topoisomerase n=3 Tax=Methanosarcina RepID=Q46AN3_METBF Length = 855 Score = 99.8 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 6/164 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 +C CG L I G F+GC+ YP C PL + +++ E C G ++ Sbjct: 630 TCKACGHVLRIVQTDSGRFVGCTGYPDCRNSYPLPKAGALTVLRSKE---CKKGGVAVLK 686 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ--RRSRYGKTFHSCDRY 131 ++ +G C+ E P ET CP+C + + +R+ C Sbjct: 687 VGNKYNWAVGIGPCFTCD-LEKECYPPETVGPCPECDGSMFLINFKDTRFLGCTKRCGYT 745 Query: 132 PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 + C C + L K + + FC +++C + Sbjct: 746 HSVPKTGKLTILDKTCETCGWKLFRLKDGDRPEEEFCINRRCTE 789 >UniRef50_B5TTQ4 TraB n=3 Tax=environmental samples RepID=B5TTQ4_9BACT Length = 750 Score = 99.8 bits (247), Expect = 4e-20, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 12/141 (8%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPD 100 Y + + + + + CP C + L + F C N +C+H+ DK Sbjct: 546 YTQLAQELSTASKLTAINAIPCPKCKSQLKKFKNTKTNQFFWICSNE-DCKHSMNDDKGK 604 Query: 101 ETA---ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------IAGECPECH 151 +CP+C+TG L + ++ K F EC+ +++ K I CP+C Sbjct: 605 PVEKVIHSCPKCKTGRLNKFQNSQTKEFFWICNDQECKHSMDDKKGQPVEKIKYPCPKCS 664 Query: 152 YPLLIEKKTAQGVKHFCASKQ 172 PL KK + FC +++ Sbjct: 665 TPLFRSKKEGKDPIWFCPNRE 685 Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 18/182 (9%) Query: 1 MAKSALFTVRNNESCPKCGAELVI-RSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 ++ ++ T N CPKC ++L ++ K + F CS C + V Sbjct: 553 LSTASKLTAINAIPCPKCKSQLKKFKNTKTNQFFWICSN-EDCKHSMNDDKGKPVEKVI- 610 Query: 59 LEGQVCPAC--GANLVLRQGRFGMFIGCINYPECEHTELIDKP---DETAITCPQCRTGH 113 CP C G + + F N EC+H+ K ++ CP+C T Sbjct: 611 ---HSCPKCKTGRLNKFQNSQTKEFFWICNDQECKHSMDDKKGQPVEKIKYPCPKCSTPL 667 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINF---KPIAGE--CPECHYPLLIEKKTAQGVKHFC 168 ++ + +R +C+ + KP+ CP+C L A G C Sbjct: 668 FRSKKEGKDPIWFCPNRETDCKVFLPEVNKKPLLEVYSCPQCASD-LRRINGANGYFWGC 726 Query: 169 AS 170 + Sbjct: 727 TN 728 Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 46/138 (33%), Gaps = 15/138 (10%) Query: 13 ESCPKCGAELVIR---SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 SCPKC + + S F C+ C + K +K CP C Sbjct: 611 HSCPKCKTGRLNKFQNSQTKEFFWICND-QECKHSMDDKKGQPVEKIKYP----CPKCST 665 Query: 70 NLVL-RQGRFGMFIGCINYP-ECEH--TELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 L ++ C N +C+ E+ KP +CPQC + ++R + F Sbjct: 666 PLFRSKKEGKDPIWFCPNRETDCKVFLPEVNKKPLLEVYSCPQCASD--LRRINGANGYF 723 Query: 126 HSCDRYPE-CQFAINFKP 142 C Y C + Sbjct: 724 WGCTNYKNGCSATYPDQK 741 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 10/92 (10%) Query: 15 CPKCGAELV--IRSGKHGPFLGCSQYP-ACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKC L + GK + C C P + +LE CP C ++L Sbjct: 660 CPKCSTPLFRSKKEGKDPIWF-CPNRETDCKVFLPEVNKK-----PLLEVYSCPQCASDL 713 Query: 72 VLRQGRFGMFIGCINYPE-CEHTELIDKPDET 102 G G F GC NY C T K Sbjct: 714 RRINGANGYFWGCTNYKNGCSATYPDQKGKPK 745 Score = 42.8 bits (99), Expect = 0.006, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVK 57 SCP+C ++L +G +G F GC+ Y C P + VK Sbjct: 705 SCPQCASDLRRINGANGYFWGCTNYKNGCSATYPDQKGKPKFEVK 749 >UniRef50_C4L6T7 UvrD/REP helicase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6T7_EXISA Length = 964 Score = 99.0 bits (245), Expect = 7e-20, Method: Composition-based stats. Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 10/104 (9%) Query: 1 MAKSALFTVRNNESCPKC-GAELVIR--SGKHGPFLGCSQYPACDYVRPLKSSADGHIVK 57 M ++R+N CP+C LVIR + + F+GCS YP CDY H Sbjct: 859 MGIEERKSIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTAN-------HPSI 911 Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 + + VCP+C LVLR G+ G F GC+N+P C+HT + D+ Sbjct: 912 IHDPIVCPSCRGYLVLRDGKNGKFYGCLNFPLCKHTMEREDVDQ 955 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 53 GHIVKVLEGQVCPAC-GANLVLRQ--GRFGMFIGCINYPECEHTELIDKPDETAITCPQC 109 + + CP C +LV+R+ R F+GC +YP C++T I CP C Sbjct: 862 EERKSIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTANHPSIIHDPIVCPSC 921 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 R G+LV R + GK F+ C +P C+ + Sbjct: 922 R-GYLVLRDGKNGK-FYGCLNFPLCKHTM 948 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 98 KPDETAITCPQCRTGHLVQR-RSRYGKTFHSCDRYPECQFAINFKPIAG---ECPECHYP 153 K CP+C GHLV R ++ TF C YP C + N I CP C Sbjct: 865 KSIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTANHPSIIHDPIVCPSCR-G 923 Query: 154 LLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 L+ + G + C + C + E Sbjct: 924 YLVLRDGKNGKFYGCLNFPLCKHTMERE 951 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 + + CP C LV+R GK+G F GC +P C + + ++ Sbjct: 912 IHDPIVCPSCRGYLVLRDGKNGKFYGCLNFPLCKHTMEREDVDQMKRIET 961 >UniRef50_B1AJN1 DNA topoisomerase I n=15 Tax=Ureaplasma RepID=B1AJN1_UREP2 Length = 681 Score = 98.6 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGR-FGMFIGCINYPECEHTELIDKPDETAITCPQCRT 111 + ++CP C +L++++ R FI C N+P C TE ++KP+ CP C + Sbjct: 582 EKVPDEKINRLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLEKPEILNELCPNC-S 640 Query: 112 GHLVQRRSRYGKTFHSCDRYPECQFAINF 140 LV+R++R K F C YPEC F N Sbjct: 641 KSLVKRKNRKNKYFIGCTGYPECNFIRNL 669 Score = 91.7 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Query: 4 SALFTVRNNESCPKCGAELVIRSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 + + N CP C +L+I+ + + F+ CS +P C + L+ + + Sbjct: 582 EKVPDEKINRLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLEK-------PEILNE 634 Query: 63 VCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETA 103 +CP C +LV R+ R FIGC YPEC +D+ + Sbjct: 635 LCPNCSKSLVKRKNRKNKYFIGCTGYPECNFIRNLDESNNDK 676 Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 92 HTELIDKPDETAIT-CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF---KPIAGEC 147 +T++ PDE CP C L+ +RSR F +C +P C+F + + + C Sbjct: 578 YTKIEKVPDEKINRLCPIC-AHDLLIKRSRMNTRFIACSNFPTCRFTESLEKPEILNELC 636 Query: 148 PECHYPLLIEKKTAQGVKHFCAS-KQCG 174 P C L+ K C +C Sbjct: 637 PNCSKSLVKRKNRKNKYFIGCTGYPECN 664 >UniRef50_A4JTK7 DNA topoisomerase n=2 Tax=Burkholderiales RepID=A4JTK7_BURVG Length = 893 Score = 97.9 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 7/127 (5%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 N CP C + SG +G F C+ C + G+ V + Q CP C ++ Sbjct: 736 NPVHCPVCEKLMRRISGANGHFWSCTDRENCKTTL---DDSAGNPVPKVAAQPCPKCSSD 792 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDET----AITCPQCRTGHLVQRRSRYGKTFH 126 + +G+ G F C + C++T I CP C + R F Sbjct: 793 MNRVRGKKGYFWSCTDREGCKNTMDDKDGAPVTRPDPIACPDCGAQMFRRERRDKKGYFW 852 Query: 127 SCDRYPE 133 C + + Sbjct: 853 GCSAFKK 859 Score = 79.4 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 50/156 (32%), Gaps = 14/156 (8%) Query: 26 SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCI 85 S F C + V CP C + G G F C Sbjct: 702 SNSKKKFTACLRLNDEHKVEFFFDETVNTTDASGNPVHCPVCEKLMRRISGANGHFWSCT 761 Query: 86 NYPECEHTELIDK----PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + C+ T P A CP+C + + + R + G F SC C+ ++ K Sbjct: 762 DRENCKTTLDDSAGNPVPKVAAQPCPKCSS-DMNRVRGKKG-YFWSCTDREGCKNTMDDK 819 Query: 142 -------PIAGECPECHYPLL-IEKKTAQGVKHFCA 169 P CP+C + E++ +G C+ Sbjct: 820 DGAPVTRPDPIACPDCGAQMFRRERRDKKGYFWGCS 855 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + + + + CP+CG E+ I + C AC + L G +K E Sbjct: 636 AEVVVKKLDAKCPQCGGEIAIGARTFD----CES--ACGF--RLWKEIAGRQLKPSEANT 687 Query: 64 CPACGANLVLRQG---RFGMFIGC---INYPECEH----TELIDKPDETAITCPQCRTGH 113 + L F C + + E T + CP C Sbjct: 688 LLTTRVVMNLNNFISNSKKKFTACLRLNDEHKVEFFFDETVNTTDASGNPVHCPVCE--K 745 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINF-------KPIAGECPECHYPLLIEKKTAQGVKH 166 L++R S F SC C+ ++ K A CP+C + + +G Sbjct: 746 LMRRISGANGHFWSCTDRENCKTTLDDSAGNPVPKVAAQPCPKCSSDM-NRVRGKKGYFW 804 Query: 167 FCASKQ 172 C ++ Sbjct: 805 SCTDRE 810 >UniRef50_A8F3N1 DNA topoisomerase n=2 Tax=Thermotogaceae RepID=A8F3N1_THELT Length = 722 Score = 95.2 bits (235), Expect = 9e-19, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 65/189 (34%), Gaps = 26/189 (13%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD--------- 52 K + N C C ++ ++ G++G +L C C L Sbjct: 547 QKWLSIDMNTNLEC-DCKSKYKLKVGRYGLYLLCEN---CSKTTSLALETPAVFYENTMY 602 Query: 53 -GHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT 111 H K VCP CG L GR+G +I C N C T CP+C Sbjct: 603 FTHQEKESIETVCPVCGGKLEQMSGRYGNYIKCQN---CGKT----YTGFARGKCPKCSA 655 Query: 112 GHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASK 171 + ++ S+ + F C C F +P CPEC L KK +C + Sbjct: 656 -VVEKKISKNKRIFFKCTSD-NCDFISWLEPSNETCPECSQR-LYYKKYRSKEVLYCQN- 711 Query: 172 QCGKPVSAE 180 C K + Sbjct: 712 -CKKTFQLK 719 >UniRef50_Q2RKN9 DNA topoisomerase I n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKN9_MOOTA Length = 1041 Score = 94.8 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPA--CDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 SCP CG +R+GKHGPF GC+ + C + + V+ LE CP CG + Sbjct: 958 SCPLCGGTTGLRTGKHGPFFGCASFRNGGCKGLINIPRRVLELAVQDLE-LTCPHCGGKV 1016 Query: 72 VLRQGRFGMFIGCINYPECEHT 93 VL+ GR G F+GC YP+C T Sbjct: 1017 VLKSGRNGAFLGCSRYPDCRWT 1038 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 10/87 (11%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPE--CEHTELIDKP------DETAITCPQCRTGH 113 CP CG LR G+ G F GC ++ C+ I + + +TCP C Sbjct: 957 PSCPLCGGTTGLRTGKHGPFFGCASFRNGGCKGLINIPRRVLELAVQDLELTCPHCGGKV 1016 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINF 140 ++ +S F C RYP+C++ +F Sbjct: 1017 VL--KSGRNGAFLGCSRYPDCRWTDSF 1041 >UniRef50_Q8EVZ3 DNA topoisomerase n=1 Tax=Mycoplasma penetrans RepID=Q8EVZ3_MYCPE Length = 707 Score = 94.0 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCR 110 I G+ CP CG +L+ ++ R G FIGC YPEC H E ++KP+E I+CP+C Sbjct: 584 EKISDEKVGRECPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEISCPECG 643 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + L++R+S+ + F C +P+C + I+ K Sbjct: 644 S-KLLKRKSKRQQVFVGCSSWPKCNYIISDK 673 Score = 85.9 bits (211), Expect = 6e-16, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 13/129 (10%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + + CPKCG +L+ + + G F+GCS YP C ++ PL+ + I Sbjct: 584 EKISDEKVGRECPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEI------ 637 Query: 62 QVCPACGANLVLRQG-RFGMFIGCINYPECEHT---ELIDKPDETAITCPQCRTGHLVQR 117 CP CG+ L+ R+ R +F+GC ++P+C + +L DK + P L + Sbjct: 638 -SCPECGSKLLKRKSKRQQVFVGCSSWPKCNYIISDKLFDKHMKETPDKPLPSKKELEEI 696 Query: 118 RSRYGKTFH 126 R+ + Sbjct: 697 RAARLPKWK 705 Score = 72.4 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG---ECPE 149 T ++ CP+C L +R R G F C YPEC + CPE Sbjct: 582 TMEKISDEKVGRECPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEISCPE 641 Query: 150 CHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 C LL K Q V C+S +C +S + Sbjct: 642 CGSKLLKRKSKRQQVFVGCSSWPKCNYIISDK 673 >UniRef50_B1VAJ5 DNA topoisomerase n=6 Tax=Acholeplasmataceae RepID=B1VAJ5_PHYAS Length = 655 Score = 94.0 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 7/106 (6%) Query: 4 SALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV---- 58 + + ++ C C L+I+ +G FLGCS++P C P K Sbjct: 550 EKIKPIETDQKCNLCNEGNLLIKKSHYGSFLGCSRFPDCKNTSPWKVQEKNKSKDSDHSN 609 Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHT-ELIDKPDET 102 Q C C NL++++ R+G F+GC +P+C++ ++ +KP+ Sbjct: 610 QTDQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVKIKNKPNSK 655 Score = 89.8 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%) Query: 45 RPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTEL-------- 95 + I + Q C C NL++++ +G F+GC +P+C++T Sbjct: 542 YQIADQKLEKIKPIETDQKCNLCNEGNLLIKKSHYGSFLGCSRFPDCKNTSPWKVQEKNK 601 Query: 96 ---IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 D ++T C C G+L+ ++SRYG +F C R+P+C+ + K Sbjct: 602 SKDSDHSNQTDQKCNLCNEGNLLIKKSRYG-SFLGCSRFPDCKNIVKIK 649 Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 16/95 (16%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK--------------PI 143 KP ET C C G+L+ ++S YG +F C R+P+C+ +K Sbjct: 553 KPIETDQKCNLCNEGNLLIKKSHYG-SFLGCSRFPDCKNTSPWKVQEKNKSKDSDHSNQT 611 Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPV 177 +C C+ L+ KK+ G C+ C V Sbjct: 612 DQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIV 646 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 2 AKSALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGH 54 +K + + + ++ C C L+I+ ++G FLGCS++P C + +K+ + Sbjct: 602 SKDSDHSNQTDQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVKIKNKPNSK 655 >UniRef50_P78032 DNA topoisomerase 1 n=2 Tax=Mycoplasma RepID=TOP1_MYCPN Length = 711 Score = 93.6 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKV 58 + + CP C + L+ R K G F+GCS +P C Y ++ + + K+ Sbjct: 610 IQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLTLEKL 669 Query: 59 LEGQVCPACGANLVLRQGRFGM---FIGCINYPECEHTELID 97 E +CP C + LV R+ +F F+GC N+P C + + + Sbjct: 670 EE--LCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKDN 709 Score = 82.5 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%) Query: 51 ADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTE-LIDKPDETAIT-- 105 K G+ CP+C + L+ R + G F+GC N+P C++ E +KP+ T Sbjct: 611 QRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLTLEKLE 670 Query: 106 --CPQCRTGHLVQRRSRYG--KTFHSCDRYPECQFAINF 140 CP+C + LV+RR+++ KTF C +P C++ Sbjct: 671 ELCPECNS-QLVKRRTKFNPNKTFVGCSNFPRCRYIKKD 708 Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 12/96 (12%) Query: 93 TELIDKPDE-TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF--------AINFKPI 143 + + K E CP C + L + R + F C +P C++ + + + Sbjct: 610 IQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLTLEKL 669 Query: 144 AGECPECHYPLLIEKKT--AQGVKHFCAS-KQCGKP 176 CPEC+ L+ + C++ +C Sbjct: 670 EELCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYI 705 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGP---FLGCSQYPACDYVRPLKSS 50 K L + E CP+C ++LV R K P F+GCS +P C Y++ +S Sbjct: 660 NKPNLTLEKLEELCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKDNAS 711 >UniRef50_B7I2H2 DNA topoisomerase n=4 Tax=Proteobacteria RepID=B7I2H2_ACIB5 Length = 672 Score = 93.2 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 16/119 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA--DGHIVKV 58 + K + CP CG L R G++G F C+ YP C P Sbjct: 547 LGKLDSAGIAAAHPCPACGKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPP 606 Query: 59 LEGQVCPACGANLVLRQG-----RFGM------FIGCINYPECEH---TELIDKPDETA 103 G CP CG L RQG + GM F C YP+C+ T KP Sbjct: 607 STGFQCPKCGKELARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQTGPDGKPVFEG 665 Score = 92.5 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 18/118 (15%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-------- 98 + CPACG L R+G++G F C YPEC+ + DK Sbjct: 544 DDELGKLDSAGIAAAHPCPACGKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKA 603 Query: 99 -PDETAITCPQCRTGHLV-------QRRSRYGKT--FHSCDRYPECQFAINFKPIAGE 146 P T CP+C +++ G+ F+SC YP+C + P Sbjct: 604 PPPSTGFQCPKCGKELARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQTGPDGKP 661 Score = 55.5 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 18/88 (20%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF---KPIAGE---- 146 +L A CP C G + RR F SC YPEC+ ++ KP + Sbjct: 549 KLDSAGIAAAHPCPAC--GKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPP 606 Query: 147 -----CPECHYPLLIE----KKTAQGVK 165 CP+C L K +G+K Sbjct: 607 STGFQCPKCGKELARRQGVSKPKKKGMK 634 >UniRef50_C9Q4L2 DNA topoisomerase n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L2_9VIBR Length = 736 Score = 90.2 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 9/93 (9%) Query: 7 FTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK------VL 59 F+ R CP C L R G++GPF C++YP C P + K Sbjct: 626 FSKRQGMVCPTCQQGTLTKRKGQNGPFWSCNRYPDCKTTFPDDNGKPNLNPKPRQAVTPS 685 Query: 60 EGQVCPACGANLVLRQGRF--GMFIGCINYPEC 90 + C CG LV R G+ + GC +P+C Sbjct: 686 TQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKC 718 Score = 74.4 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 14/105 (13%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 + G +G VCP C L R+G+ G F C YP+C+ T D Sbjct: 614 TQVDHVKTQGVPFSKRQGMVCPTCQQGTLTKRKGQNGPFWSCNRYPDCKTTFPDDNGKPN 673 Query: 103 AIT-------------CPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 C QC + + + G + C +P+C Sbjct: 674 LNPKPRQAVTPSTQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKC 718 Score = 65.9 bits (159), Expect = 7e-10, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 19/107 (17%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF---KP------ 142 T+ + + CP C+ G L +R+ + G F SC+RYP+C+ KP Sbjct: 620 KTQGVPFSKRQGMVCPTCQQGTLTKRKGQNG-PFWSCNRYPDCKTTFPDDNGKPNLNPKP 678 Query: 143 -------IAGECPECHYPLLIEKKTAQG-VKHFCAS-KQCGKPVSAE 180 C +C PL+ +G C+ +C + Sbjct: 679 RQAVTPSTQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKCTVRFFDQ 725 Score = 48.6 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%) Query: 5 ALFTVRNNESCPKCGAELVIRSG-KHGPF-LGCSQYPACDYVRPLKSSADGH 54 T E C +CG LV R G K G F GCS +P C ++ Sbjct: 680 QAVTPSTQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKCTVRFFDQNGQPDR 731 >UniRef50_O27661 DNA topoisomerase 1 n=4 Tax=Methanobacteriaceae RepID=TOP1_METTH Length = 718 Score = 89.8 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 15/126 (11%) Query: 14 SCPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CP CG +LVI+ F+GCS YP C V L A + +C CG + Sbjct: 597 ECPACGGKLVIKYSPRNRSTFVGCSSYPDCRTVYSLPRGAS------VLKSLCEKCGLPM 650 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 + GR C++ P+C + + +E CP+C + L++R RYG+ F C + Sbjct: 651 -ISYGRPRQR-ACLD-PKCGKKK--SEVEEVVGKCPECGS-DLIKRSGRYGE-FVGCKGF 703 Query: 132 PECQFA 137 P+C+F Sbjct: 704 PKCRFT 709 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 7/86 (8%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK----PIAGECPECHYP 153 + CP C +++ R TF C YP+C+ + + C +C P Sbjct: 590 QDSRVVGECPACGGKLVIKYSPRNRSTFVGCSSYPDCRTVYSLPRGASVLKSLCEKCGLP 649 Query: 154 LLIEKKTAQGVKHFCASKQCGKPVSA 179 ++ + + C +CGK S Sbjct: 650 MI---SYGRPRQRACLDPKCGKKKSE 672 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 64 CPACGANLVLRQGRF--GMFIGCINYPECEHTELIDKPDETAIT-CPQCRTGHLVQRRSR 120 CPACG LV++ F+GC +YP+C + + + C +C + R R Sbjct: 598 CPACGGKLVIKYSPRNRSTFVGCSSYPDCRTVYSLPRGASVLKSLCEKCGLPMISYGRPR 657 Query: 121 YGKTFHSCDRYPEC-QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 P+C + + + G+CPEC LI++ G C +C S Sbjct: 658 QRACL-----DPKCGKKKSEVEEVVGKCPECGSD-LIKRSGRYGEFVGCKGFPKCRFTCS 711 Query: 179 AE 180 + Sbjct: 712 VD 713 Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 25/39 (64%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 CP+CG++L+ RSG++G F+GC +P C + + + Sbjct: 679 KCPECGSDLIKRSGRYGEFVGCKGFPKCRFTCSVDEVPE 717 >UniRef50_UPI0001C41D8C DNA topoisomerase I TopA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D8C Length = 741 Score = 89.0 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 14/128 (10%) Query: 14 SCPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 C CG +L+ R F+GCS +P C L A+ + CP CG + Sbjct: 590 EC-SCGGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLK------KTCPTCGLPM 642 Query: 72 V--LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 + + G C++ C + E CP+C L++R RYG+ F C Sbjct: 643 ISIKKASGKGRDHVCLD-SNCGKDVSRRQAPEVVGKCPECGK-DLLKRSGRYGE-FVGCS 699 Query: 130 RYPECQFA 137 +P C+F Sbjct: 700 GFPRCRFT 707 Score = 70.1 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%) Query: 111 TGHLVQRRSRYGK-TFHSCDRYPECQFAINFKP----IAGECPECHYPLL-IEKKTAQGV 164 G L++R S K TF C +P+C+ + + CP C P++ I+K + +G Sbjct: 594 GGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKKTCPTCGLPMISIKKASGKGR 653 Query: 165 KHFCASKQCGKPVS 178 H C CGK VS Sbjct: 654 DHVCLDSNCGKDVS 667 Score = 60.9 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CP+CG +L+ RSG++G F+GCS +P C + + + K E + ++ Sbjct: 677 KCPECGKDLLKRSGRYGEFVGCSGFPRCRFTCSVDELNNLGKDKNKEDVKENKGVSKKIV 736 Query: 74 R 74 R Sbjct: 737 R 737 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 67 CGANLVLRQGR--FGMFIGCINYPECEHTELIDKPDE-TAITCPQCRTGHLVQRRSRYGK 123 CG L+ R F+GC N+P+C+ T + K TCP C + +++ Sbjct: 593 CGGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKKTCPTCGLPMISIKKASGKG 652 Query: 124 TFHSCDRYPEC--QFAINFKP-IAGECPECHYPLLIEKKTAQGVKHFCA 169 H C C + P + G+CPEC LL ++ G C+ Sbjct: 653 RDHVC-LDSNCGKDVSRRQAPEVVGKCPECGKDLL-KRSGRYGEFVGCS 699 >UniRef50_C6P2V7 DNA topoisomerase n=2 Tax=Proteobacteria RepID=C6P2V7_9PROT Length = 876 Score = 88.2 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 E+CPKCG L R GK G F+GC+ YP CDY R L D + GQ P + Sbjct: 584 EETCPKCGKPLSKRLGKRGSFIGCTGYPECDYTRSLGGEEDAGESRKELGQ-HPDTNQLV 642 Query: 72 VLRQGRFGMFIGCINYPECEHTEL 95 +L +G +G ++ E E T+ Sbjct: 643 LLLRGPYGPYVQLGEMIEGEKTKP 666 Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 + + + CP CG L R G+ G FIGC YPEC++T + ++ Sbjct: 571 EKKDVDRPGTEILEETCPKCGKPLSKRLGKRGSFIGCTGYPECDYTRSLGGEEDAG 626 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 94 ELIDKPDET--AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 + +D+P TCP+C G + +R +F C YPEC + + Sbjct: 573 KDVDRPGTEILEETCPKC--GKPLSKRLGKRGSFIGCTGYPECDYTRSL 619 >UniRef50_Q2BNY9 Helicase IV n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNY9_9GAMM Length = 952 Score = 86.3 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 18/114 (15%) Query: 5 ALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ- 62 + C C L+ R G HG F+GCS YP C+Y + + E + Sbjct: 839 KEQSEAKERRCRSCESGTLIKREGPHGTFMGCSNYPLCNYKESTCPRCNSTMNNSNEYRI 898 Query: 63 -----------VCPACGANLVLRQGRFGMFIGCINYPE-----CEHTELIDKPD 100 +CP CG NL++R+ +G F GC NY C + I+ P+ Sbjct: 899 CSNSSCSWWIPICPECGGNLMMRESHYGKFWGCENYRSVGSSCCHRQKFIEPPE 952 Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 24/130 (18%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPAC-GANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 Y L + + C +C L+ R+G G F+GC NYP C + E Sbjct: 827 KYELTLDEFGIDKEQSEAKERRCRSCESGTLIKREGPHGTFMGCSNYPLCNYKES----- 881 Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT 160 TCP+C + R C C + PI CPEC L++ +++ Sbjct: 882 ----TCPRCNSTMNNSNEYR------ICSN-SSC---SWWIPI---CPECGGNLMM-RES 923 Query: 161 AQGVKHFCAS 170 G C + Sbjct: 924 HYGKFWGCEN 933 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 12/79 (15%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 ++ + C C +G L++R +G TF C YP C + CP C+ + Sbjct: 840 EQSEAKERRCRSCESGTLIKREGPHG-TFMGCSNYPLCNYK------ESTCPRCNSTM-- 890 Query: 157 EKKTAQGVKHFCASKQCGK 175 C++ C Sbjct: 891 ---NNSNEYRICSNSSCSW 906 >UniRef50_C6BT42 DNA topoisomerase type IA central domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT42_DESAD Length = 720 Score = 85.5 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG------HIVKVLEGQVCPAC 67 CPKC L R G G F GCS YP C+ P K+ + + CP C Sbjct: 621 CPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEHKCPDC 680 Query: 68 GANLVLR-QGRFGMFIG-CINYPECEHTELIDKPDET 102 G L+ R R G+F C +PEC+ +K Sbjct: 681 GKGLIRRPAKRKGLFWWSCSGFPECKFRCFDEKGKPK 717 Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 14/87 (16%) Query: 64 CPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDE-------------TAITCPQC 109 CP C L R+G G F GC YP+C T CP C Sbjct: 621 CPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEHKCPDC 680 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQF 136 G + + R G + SC +PEC+F Sbjct: 681 GKGLIRRPAKRKGLFWWSCSGFPECKF 707 Score = 70.1 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 19/99 (19%) Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----------------I 143 +A+ CP+C+TG L R+ GK F C YP+C K Sbjct: 615 KSSAVQCPKCKTGFLKPRKGPKGK-FWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASK 673 Query: 144 AGECPECHYPLLIEKKTAQG-VKHFCAS-KQCGKPVSAE 180 +CP+C L+ +G C+ +C E Sbjct: 674 EHKCPDCGKGLIRRPAKRKGLFWWSCSGFPECKFRCFDE 712 Score = 45.9 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%) Query: 12 NESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADG 53 CP CG L+ R K + CS +P C + + Sbjct: 674 EHKCPDCGKGLIRRPAKRKGLFWWSCSGFPECKFRCFDEKGKPK 717 >UniRef50_D1BLQ5 DNA topoisomerase n=3 Tax=Veillonella RepID=D1BLQ5_VEIPT Length = 773 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%) Query: 45 RPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELID------ 97 + K D V + VCP C L R G+FG F+GC NYP C+HT+ ++ Sbjct: 651 QNRKRPMDSESVDLSSLPVCPKCKKGRLQQRNGKFGAFLGCTNYPTCKHTQPVEGDTSSV 710 Query: 98 ------KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 ++ CP+C G+ V++ R G+T C +C+ Sbjct: 711 EGNIEVSDEDKQYKCPRCNVGYFVKQEVR-GRTNWICSNRSQCKT 754 Score = 75.1 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%) Query: 14 SCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG-----HIVKVLEGQVCPAC 67 CPKC L R+GK G FLGC+ YP C + +P++ + + CP C Sbjct: 669 VCPKCKKGRLQQRNGKFGAFLGCTNYPTCKHTQPVEGDTSSVEGNIEVSDEDKQYKCPRC 728 Query: 68 G-ANLVLRQGRFGMFIGCINYPECEHTELI 96 V ++ R C N +C+ Sbjct: 729 NVGYFVKQEVRGRTNWICSNRSQCKTQCSD 758 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 17/89 (19%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA---------------INFKPIAGECPEC 150 CP+C+ G L QR ++G F C YP C+ ++ + +CP C Sbjct: 670 CPKCKKGRLQQRNGKFG-AFLGCTNYPTCKHTQPVEGDTSSVEGNIEVSDEDKQYKCPRC 728 Query: 151 HYPLLIEKKTAQGVKHFCASK-QCGKPVS 178 + ++++ C+++ QC S Sbjct: 729 NVGYFVKQEVRGRTNWICSNRSQCKTQCS 757 >UniRef50_Q9PHK2 DNA topoisomerase I, plasmid n=3 Tax=Gammaproteobacteria RepID=TOP1P_XYLFA Length = 660 Score = 84.8 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 5/101 (4%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-LEGQVCPACGA 69 C +CG L GK+G F GCS YP C P + G V + C CG Sbjct: 559 PKHPCQECGKPLRRIPGKNGHFWGCSGYPDCSVTFPDEGGKPGQKKPVEVSNFACVKCGN 618 Query: 70 NLV--LRQGRFGM-FIGCINYPE-CEHTELIDKPDETAITC 106 L +++G+ G F GC + E C+ T K Sbjct: 619 PLKHLVKKGKGGYDFWGCSGFKEGCKATYEDKKGKPNFEKA 659 Score = 74.7 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 10/103 (9%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT---- 105 V C CG L G+ G F GC YP+C T + Sbjct: 549 ELSTLQVSATPKHPCQECGKPLRRIPGKNGHFWGCSGYPDCSVTFPDEGGKPGQKKPVEV 608 Query: 106 ----CPQCRTG-HLVQRRSRYGKTFHSCDRYPE-CQFAINFKP 142 C +C + ++ + G F C + E C+ K Sbjct: 609 SNFACVKCGNPLKHLVKKGKGGYDFWGCSGFKEGCKATYEDKK 651 Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 17/93 (18%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF--------KPIAG---ECPECH 151 C +C G ++R F C YP+C KP+ C +C Sbjct: 560 KHPCQEC--GKPLRRIPGKNGHFWGCSGYPDCSVTFPDEGGKPGQKKPVEVSNFACVKCG 617 Query: 152 YPL--LIEKKTAQGVKHFCA--SKQCGKPVSAE 180 PL L++K C+ + C + Sbjct: 618 NPLKHLVKKGKGGYDFWGCSGFKEGCKATYEDK 650 >UniRef50_Q9Z5W4 Topoisomerase n=1 Tax=Pseudomonas aeruginosa RepID=Q9Z5W4_PSEAE Length = 405 Score = 84.4 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 26/114 (22%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLK---------- 48 T SCP+CG +V+R+ K G F GCS YP C + P++ Sbjct: 286 KQAGTPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCRGIIPVEVIVPAEDAGP 345 Query: 49 ------SSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECE 91 +A + VCP CG ++VLR + G F GC +P+C Sbjct: 346 VPTEQAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKCR 399 Score = 71.7 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 44/130 (33%), Gaps = 32/130 (24%) Query: 38 YPACDYVRPLKSSADGHIVKVLEG-QVCPACGANLVLRQGRFGM-----FIGCINYPECE 91 PA + EG CP CG +VLR + G F GC YP+C Sbjct: 270 KPAAPIAEREDVPPEPKQAGTPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCR 329 Query: 92 HTELID-----------------------KPDETAITCPQCRTGHLV---QRRSRYGKTF 125 ++ + A CP+C ++ +R S+ G F Sbjct: 330 GIIPVEVIVPAEDAGPVPTEQAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRF 389 Query: 126 HSCDRYPECQ 135 C +P+C+ Sbjct: 390 WGCPGFPKCR 399 Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 34/110 (30%) Query: 99 PDETAITCPQCRTGHLV---QRRSRYGKTFHSCDRYPECQFAINFK-------------- 141 E +CP+C ++ +R G+ F C YP+C+ I + Sbjct: 290 TPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCRGIIPVEVIVPAEDAGPVPTE 349 Query: 142 -----------PIAGE-CPECHYPLLIEKKTAQGVK----HFCAS-KQCG 174 P CP+C +++ K C +C Sbjct: 350 QAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKCR 399 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRP 46 A+ A + + CPKCG +V+R K G F GC +P C +R Sbjct: 354 ARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKCRGMRS 403 >UniRef50_D0Z5F5 DNA topoisomerase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z5F5_LISDA Length = 727 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 12/98 (12%) Query: 15 CPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV---CPACGAN 70 CP C L+ R+G G F C++YP C P KS K CP C Sbjct: 628 CPNCADGHLIKRNGSKGVFWSCNRYPECKTSFPDKSGKPDTAPKAKPQVSEFNCPLCQKP 687 Query: 71 LVLRQGRF------GMFIGCINYPECE--HTELIDKPD 100 LV R+G+ F GC YP+C+ + E +KP Sbjct: 688 LVRRKGKSDKDKPEKYFYGCSGYPQCKASYQEQDNKPK 725 Score = 76.7 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 17/97 (17%) Query: 58 VLEGQVCPAC-GANLVLRQGRFGMFIGCINYPECEH----------TELIDKPDETAITC 106 +E CP C +L+ R G G+F C YPEC+ T KP + C Sbjct: 622 TVETFDCPNCADGHLIKRNGSKGVFWSCNRYPECKTSFPDKSGKPDTAPKAKPQVSEFNC 681 Query: 107 PQCRTGHLVQRRSRYG-----KTFHSCDRYPECQFAI 138 P C+ LV+R+ + K F+ C YP+C+ + Sbjct: 682 PLCQKP-LVRRKGKSDKDKPEKYFYGCSGYPQCKASY 717 Score = 62.8 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 15/94 (15%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK--- 141 +Y + T ++ ET CP C GHL++R G F SC+RYPEC+ + K Sbjct: 608 AHYVDKVKTNGVNITVET-FDCPNCADGHLIKRNGSKG-VFWSCNRYPECKTSFPDKSGK 665 Query: 142 ----PIAGE------CPECHYPLLIEKKTAQGVK 165 P A CP C PL+ K + K Sbjct: 666 PDTAPKAKPQVSEFNCPLCQKPLVRRKGKSDKDK 699 >UniRef50_A0LAP8 DNA topoisomerase n=13 Tax=cellular organisms RepID=A0LAP8_MAGSM Length = 744 Score = 84.0 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 14/114 (12%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL--------- 95 R + S +CP CG ++ R+ G F C C T Sbjct: 630 RRQRRSKAEVTPTPNAAPLCPQCGGPMLQRKSPQGAFWSCAEQATCTGTRPGSPLAAHSP 689 Query: 96 -IDKPDETAITCPQCRTGHLVQRRSRYGKT----FHSCDRYPECQFAINFKPIA 144 + E CP+C+ LVQR + GK F C RYP+C++ + Sbjct: 690 LMQPNPERGPLCPKCQQAPLVQRTAYRGKNSGQPFWGCQRYPQCRYTQASQTTE 743 Score = 81.3 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 2 AKSALFTVRNN-ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR---PLKSSADGHIVK 57 +K+ + N CP+CG ++ R G F C++ C R PL + + Sbjct: 635 SKAEVTPTPNAAPLCPQCGGPMLQRKSPQGAFWSCAEQATCTGTRPGSPLAAHSPLMQPN 694 Query: 58 VLEGQVCPAC-GANLVLRQGRFG-----MFIGCINYPECEHTELIDKPDE 101 G +CP C A LV R G F GC YP+C +T+ + Sbjct: 695 PERGPLCPKCQQAPLVQRTAYRGKNSGQPFWGCQRYPQCRYTQASQTTES 744 Score = 43.2 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 21/104 (20%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE--------- 146 + A CPQC G ++QR+S G F SC C P+A Sbjct: 639 VTPTPNAAPLCPQCG-GPMLQRKSPQG-AFWSCAEQATCTGTRPGSPLAAHSPLMQPNPE 696 Query: 147 ----CPECHYPLLIEKKTAQG-----VKHFCAS-KQCGKPVSAE 180 CP+C L+++ +G C QC +++ Sbjct: 697 RGPLCPKCQQAPLVQRTAYRGKNSGQPFWGCQRYPQCRYTQASQ 740 >UniRef50_O28469 DNA topoisomerase 1 n=8 Tax=Euryarchaeota RepID=TOP1_ARCFU Length = 663 Score = 83.2 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPD 100 DY + K +G + G+ CP CG LV+RQ + G FIGC NYP+C T + + Sbjct: 562 DYRKLSKDLREGVKKDKIVGK-CPECGGELVVRQSKAGKRFIGCSNYPDCTFTLPLPQNG 620 Query: 101 ETAITCPQCRTGHL--VQRRSRYGKTFHSCDRYPECQFAINFK 141 IT QC+ + V+ R++ G C P C + K Sbjct: 621 TLYITAKQCKEHEIKEVKIRTKKGYWNLGC---PYCNYLNWKK 660 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%) Query: 1 MAKSALFTVRNNE---SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIV 56 ++K V+ ++ CP+CG ELV+R K G F+GCS YP C + PL + +I Sbjct: 566 LSKDLREGVKKDKIVGKCPECGGELVVRQSKAGKRFIGCSNYPDCTFTLPLPQNGTLYIT 625 Query: 57 KVLEGQVCPACGANLVLRQGRFGMF-IGCINYPECEH 92 + C V + + G + +GC P C + Sbjct: 626 A----KQCKEHEIKEVKIRTKKGYWNLGC---PYCNY 655 >UniRef50_Q3SMS7 DNA topoisomerase n=8 Tax=Proteobacteria RepID=Q3SMS7_THIDA Length = 857 Score = 82.5 bits (202), Expect = 7e-15, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 E+CPKC L +++ K G F+GCS YP CDY RPL + + + PA G ++ Sbjct: 572 EACPKCAKPLFMQASKRGLFIGCSGYPECDYTRPLHPATAEGDNILGKD---PASGLDVK 628 Query: 73 LRQGRFGMFIGCINYPE 89 L GRFG ++ + PE Sbjct: 629 LLSGRFGPYVQIGDMPE 645 Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA--ITCPQCRTGHLVQRRS 119 + CP C L ++ + G+FIGC YPEC++T + I +G V+ S Sbjct: 572 EACPKCAKPLFMQASKRGLFIGCSGYPECDYTRPLHPATAEGDNILGKDPASGLDVKLLS 631 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPE 149 + PE + A KP P+ Sbjct: 632 GRFGPYVQIGDMPEDKKAP--KPRRASWPK 659 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 40 ACDYVRPLKSSADGHIVKVLEGQVCPAC-GANLVLRQGRFGMFIGCINYP-ECEHTELID 97 C R D LE ++ G + R G F + + + + ++ Sbjct: 510 NCFLTRHFSHYVDYDFTAKLEDKLDDVSNGKRVWSRL--LGEFW--SGFEGDLKAKQDVE 565 Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 + CP+C +Q S+ G F C YPEC + P Sbjct: 566 RGCPILEACPKCAKPLFMQ-ASKRG-LFIGCSGYPECDYTRPLHP 608 >UniRef50_C4LDL2 UvrD/REP helicase n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LDL2_TOLAT Length = 1013 Score = 82.5 bits (202), Expect = 7e-15, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 31/120 (25%) Query: 14 SCPKCGAELVI-RSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +CP C + ++ ++ +G F CS PAC++ C CG+ L Sbjct: 893 NCPSCESGWLLAKNSHYGRKFYICSLSPACNHTTNS----------------CKQCGSPL 936 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 + N+PE D + + C +C G +V R+++ G TF+ C+RY Sbjct: 937 L-------------NHPEVLRICANDACQDIEVGCHRCGIGTMVLRKNKNGGTFYGCNRY 983 Score = 79.0 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 + + DK + CP C +G L+ + S YG+ F+ C P C N C +C Sbjct: 879 KFITMSDKAEIGLWNCPSCESGWLLAKNSHYGRKFYICSLSPACNHTTN------SCKQC 932 Query: 151 HYPLLIEKKTAQGVKHFCASKQCG 174 PLL + V CA+ C Sbjct: 933 GSPLLNHPE----VLRICANDACQ 952 >UniRef50_A7ZI15 Helicase, UvrD family n=1 Tax=Escherichia coli E24377A RepID=A7ZI15_ECO24 Length = 1010 Score = 82.1 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 31/120 (25%) Query: 14 SCPKCGAE-LVIRSGKH-GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CP C + L + ++ F CS PACDY+ C C + + Sbjct: 886 HCPDCESGCLTGKVSRYDKKFYVCSHSPACDYMAS----------------ACKQCSSPM 929 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 V+ G + C N PEC+ E I C +C G +++R+++ G F+ C+RY Sbjct: 930 VMHNGLQRI---CAN-PECQ---------EIEIVCRRCGLGTMLKRKNKDGGVFYGCNRY 976 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 D + CP C +G L + SRY K F+ C P C + +A C +C P+++ Sbjct: 878 DSLEIGQWHCPDCESGCLTGKVSRYDKKFYVCSHSPACDY------MASACKQCSSPMVM 931 Query: 157 EKKTAQGVKHFCASKQCGKP 176 G++ CA+ +C + Sbjct: 932 H----NGLQRICANPECQEI 947 >UniRef50_A4WTK0 UvrD/REP helicase n=8 Tax=Rhodobacterales RepID=A4WTK0_RHOS5 Length = 978 Score = 82.1 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 48/127 (37%), Gaps = 36/127 (28%) Query: 11 NNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 N C +CG L+ GK G + C C + P CP+CGA Sbjct: 866 ENHVCGECGGRLLGVIGKDGRTWYRCEHAQHCGNLLP----------------ACPSCGA 909 Query: 70 NLVLRQGRFGMF-IGC-INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 L R GC +YP TCP+CR G LV+R +G+ F Sbjct: 910 ALPRRNEEAAEVRCGCGASYP----------------TCPECRDGWLVERAGSFGR-FLG 952 Query: 128 CDRYPEC 134 C RYP C Sbjct: 953 CVRYPTC 959 Score = 42.0 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 7/63 (11%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVK 165 C +C G L+ + G+T++ C+ C + CP C L + A V+ Sbjct: 870 CGECG-GRLLGVIGKDGRTWYRCEHAQHCGNLLP------ACPSCGAALPRRNEEAAEVR 922 Query: 166 HFC 168 C Sbjct: 923 CGC 925 >UniRef50_C6WSV7 DNA topoisomerase n=4 Tax=Proteobacteria RepID=C6WSV7_METML Length = 864 Score = 81.7 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 6/109 (5%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACG 68 +E+CPKCG L + + G F+GC+ Y P CDY R + +A+ V G V A Sbjct: 584 DEACPKCGKPLQKQLSRFGSFIGCTGYNDTPKCDYKRSIDGTANAGTDPVSIG-VDAATS 642 Query: 69 ANLVLRQGRFGMFI--GCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 + L G +G ++ G E + + + P E A+ T +++ Sbjct: 643 KEIYLMNGPYGPYLQVGMAVEGEKKKPKRVSIPKEIALADVNLETANML 691 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 42 DYVRPLKSSADGHIV-KVLEGQVCPACGANLVLRQGRFGMFIGCINY---PECEHTELID 97 D+ + + + AD L + CP CG L + RFG FIGC Y P+C++ ID Sbjct: 564 DFNQQIHNKADVERPGNELIDEACPKCGKPLQKQLSRFGSFIGCTGYNDTPKCDYKRSID 623 Query: 98 KPDETA 103 Sbjct: 624 GTANAG 629 >UniRef50_C6AVQ0 UvrD/REP helicase n=2 Tax=Alphaproteobacteria RepID=C6AVQ0_RHILS Length = 972 Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 32/127 (25%) Query: 10 RNNESCPKCGAELVIRSGKHGPFL-GCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + C +CG L++ G+ C CD V P C ACG Sbjct: 864 EKTQECGECGGRLLVARGQDDRMWFRCEHVQHCDNVLP----------------ACQACG 907 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 L P+ E+ A CPQC+ G V+R RYG F SC Sbjct: 908 TALPR--------------PKVGSQEVSCGCGANAPKCPQCKDGWFVERSGRYG-PFLSC 952 Query: 129 DRYPECQ 135 RYP C Sbjct: 953 VRYPSCD 959 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query: 11 NNESCPKCGAEL-VIRSGKHGPFLGCSQYPACDYVRPLKSSADG 53 N CP+C V RSG++GPFL C +YP+CD ++ Sbjct: 927 NAPKCPQCKDGWFVERSGRYGPFLSCVRYPSCDGKARSNTAKQK 970 >UniRef50_B1M0P4 DNA topoisomerase n=14 Tax=Alphaproteobacteria RepID=B1M0P4_METRJ Length = 894 Score = 80.1 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 11/83 (13%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRP----------LKSSADGHIVKVL 59 N +CP CG +L ++ GK G F+GCS YP C Y R SSA+G V Sbjct: 600 NPRTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYTRQLSATGIDGDGDGSSAEGGQPGVR 659 Query: 60 EGQVCPACGANLVLRQGRFGMFI 82 PA G + LR GRFG F+ Sbjct: 660 VLGDDPATGLPVTLRDGRFGPFL 682 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 + CP CG L L+ G+FG FIGC NYPEC++T + Sbjct: 602 RTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYTRQLSATGIDG 644 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI 143 H TCP C +G L + ++G F C YPEC++ Sbjct: 590 HIFPDKGDGSNPRTCPTCGSGQLSLKLGKFG-AFIGCSNYPECKYTRQLSAT 640 >UniRef50_Q5ZHE3 DNA topoisimerase n=9 Tax=root RepID=Q5ZHE3_9BACT Length = 737 Score = 79.0 bits (193), Expect = 8e-14, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 7/102 (6%) Query: 11 NNESCPKCGAEL--VIRSGKHGPFLGCSQYPA-CDYVRPLKSSAD--GHIVKVLEGQVCP 65 + CP CG L + + K+ F GC+ + C + K KV E C Sbjct: 628 DTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAPKVSELHKCM 687 Query: 66 ACGANLVLRQGRF-GMFI-GCINYPECEHTELIDKPDETAIT 105 ACG L R G+ GMF GC N+P C+ T K Sbjct: 688 ACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPDLKGRPDYSK 729 Score = 70.1 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 59 LEGQVCPACGANL--VLRQGRFGMFIGCINYPE-CEHTELIDKPDETA---------ITC 106 ++ CP+CG L + ++ + F GC + + C+ C Sbjct: 627 IDTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAPKVSELHKC 686 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 C G + + G + C +P C+ Sbjct: 687 MACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPD 720 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 15/89 (16%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPE-CQFAINFK---PIAGECPE---------C 150 CP C ++ + F C + + C+FA + K P+ E P+ C Sbjct: 630 HPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAPKVSELHKCMAC 689 Query: 151 HYPLLIEKKTAQG-VKHFCAS-KQCGKPV 177 + L +G C++ C + Sbjct: 690 GHGLSRRPGKKRGMFWWGCSNFPTCKQTY 718 >UniRef50_A3D9J8 UvrD/REP helicase n=11 Tax=Gammaproteobacteria RepID=A3D9J8_SHEB5 Length = 1004 Score = 78.6 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 2 AKSALFTVRNNESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK--- 57 + S + + C +C ++ R+G F CS +P CD+ + + Sbjct: 875 STSLVQRLFKEVKCVRCSTGMLKPRTGNFKSFYSCSHFPLCDHKEQGCELCASPMTRNHF 934 Query: 58 -----------VLEGQVCPACGANLVLRQGRFGMFIGCINY-----PECEHTELIDK 98 +C CG ++ L+ GRFG F C NY P C +T K Sbjct: 935 AGFKVCLNEACGHISPLCNLCGGDMQLKDGRFGPFWACRNYRGQNLPSCTNTLNKAK 991 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 E + + + + C +C TG L R + K+F+SC +P C C C Sbjct: 873 EFSTSLVQRLFKEVKCVRCSTGMLKPRTGNF-KSFYSCSHFPLCDHK------EQGCELC 925 Query: 151 HYPLLIEKKTAQGVKHFCASKQCGKP 176 P+ C ++ CG Sbjct: 926 ASPMTRNHFAG---FKVCLNEACGHI 948 >UniRef50_B9NSL7 UvrD/REP helicase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSL7_9RHOB Length = 971 Score = 78.6 bits (192), Expect = 9e-14, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 31/126 (24%) Query: 11 NNESCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 +C +CG L+ K G + C C + CP+CG Sbjct: 870 EPHTCGECGGHLLAFPTKDGGMWYRCEHADLCGFSIN----------------ACPSCGI 913 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 L + G G + C N CP+C G LV+R+SRYGK F C Sbjct: 914 GLPEQDGEAGP-MKCRN------------CGAEYPACPECENGWLVERKSRYGK-FLGCV 959 Query: 130 RYPECQ 135 +P C+ Sbjct: 960 SFPRCK 965 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 26/106 (24%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG------- 145 T D+ +E TC +C GHL+ ++ G ++ C+ C F+IN P G Sbjct: 862 TGADDRLNEP-HTCGECG-GHLLAFPTKDGGMWYRCEHADLCGFSINACPSCGIGLPEQD 919 Query: 146 ----------------ECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 CPEC L+E+K+ G C S +C Sbjct: 920 GEAGPMKCRNCGAEYPACPECENGWLVERKSRYGKFLGCVSFPRCK 965 >UniRef50_C9RSM0 DNA topoisomerase n=49 Tax=Bacilli RepID=C9RSM0_GEOSY Length = 697 Score = 78.2 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 15/115 (13%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 N +CP+CGA L R K G L CS AC Y R L + CP C Sbjct: 581 TNLTCPECGALLKERKTKDGRMLVCSNL-ACRYRRRRDPK--------LSNRRCPQCHRR 631 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 + + +G+ GM+ +C +++K DET + L+++ S ++F Sbjct: 632 MEMHEGKAGMYF------QCRPCNIVEKADETKRIAAKGSERALLKKYSPANESF 680 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP--IAGECPECH 151 ++ P+ T +TCP+C G L++ R C C++ P CP+CH Sbjct: 573 QVYKAPNLTNLTCPEC--GALLKERKTKDGRMLVCSNL-ACRYRRRRDPKLSNRRCPQCH 629 Query: 152 YPLLIEKKTAQGVKHFC 168 + + + G+ C Sbjct: 630 RRMEMH-EGKAGMYFQC 645 Score = 45.5 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 +K S + L CP CGA L R+ + G + C N C + D P + C Sbjct: 568 IKQSEQVYKAPNLTNLTCPECGALLKERKTKDGRMLVCSNL-ACRYRRRRD-PKLSNRRC 625 Query: 107 PQCRTGHLVQRRSRYGKTF 125 PQC + + G F Sbjct: 626 PQCHRRMEMH-EGKAGMYF 643 Score = 40.1 bits (92), Expect = 0.034, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 CPEC LL E+KT G C++ C Sbjct: 581 TNLTCPECGA-LLKERKTKDGRMLVCSNLACRYR 613 >UniRef50_B8EMQ0 DNA topoisomerase n=153 Tax=Alphaproteobacteria RepID=B8EMQ0_METSB Length = 977 Score = 77.1 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 6/78 (7%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPL-----KSSADGHIVKVLEGQVC 64 + CP CG +L ++ GK G F+GCS YP C + R L + G V V Sbjct: 600 DPRGCPSCGEGKLSLKLGKFGAFIGCSNYPECKFTRTLAAPDGAEANGGERPGVKSLGVD 659 Query: 65 PACGANLVLRQGRFGMFI 82 P G + LR GRFG+++ Sbjct: 660 PDSGEEITLRDGRFGVYV 677 Score = 56.3 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 + + CP+CG L L+ G+FG FIGC NYPEC+ T + PD Sbjct: 599 SDPRGCPSCGEGKLSLKLGKFGAFIGCSNYPECKFTRTLAAPD 641 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 H + CP C G L + ++G F C YPEC+F Sbjct: 590 HIFPPKEDGSDPRGCPSCGEGKLSLKLGKFG-AFIGCSNYPECKFT 634 >UniRef50_D0D7V2 DNA topoisomerase n=1 Tax=Citreicella sp. SE45 RepID=D0D7V2_9RHOB Length = 918 Score = 77.1 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + CPKCG L +++ + G F+GC YP C Y RP+ E + G Sbjct: 628 DPRICPKCGQGRLHLKTSRTGGFVGCGNYPECTYTRPIAGEGADGE----ERLLGSHEGD 683 Query: 70 NLVLRQGRFGMFI 82 + L+ GRFG ++ Sbjct: 684 EVWLKAGRFGPYV 696 Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + CP+C G L + SR G F C YPEC + +PIAGE Sbjct: 621 PPREDGSDPRICPKCGQGRLHLKTSRTGG-FVGCGNYPECTYT---RPIAGE 668 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 + ++CP CG L L+ R G F+GC NYPEC +T I Sbjct: 627 SDPRICPKCGQGRLHLKTSRTGGFVGCGNYPECTYTRPIAGEGADG 672 >UniRef50_UPI0001BCB37F UvrD/REP helicase n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCB37F Length = 1017 Score = 74.0 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 11/111 (9%) Query: 26 SGKHGPF-LGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFI 82 ++ F L YP+ ++R L + + + + E ++C ACG++++ R+ F Sbjct: 902 RTRNRTFILFDENYPSI-FIRELFDNEEMTLDEYGEKRICKACGSHMIKRKNSITNEEFY 960 Query: 83 GCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 GC +YP+C++TE + E CP C + L +S++ + + C+ Y Sbjct: 961 GCYHYPKCDYTEPL----ENINICPICGSKLL---KSKFEENSYYCNNYKR 1004 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 C C + + ++ S + F+ C YP+C + + I CP C LL K Sbjct: 936 EKRICKACGSHMIKRKNSITNEEFYGCYHYPKCDYTEPLENINI-CPICGSKLLKSKFEE 994 Query: 162 QGVKHFCAS 170 ++C + Sbjct: 995 NS--YYCNN 1001 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 19/99 (19%) Query: 11 NNESCPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 C CG+ ++ R + F GC YP CDY PL++ +CP CG Sbjct: 936 EKRICKACGSHMIKRKNSITNEEFYGCYHYPKCDYTEPLENIN-----------ICPICG 984 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP 107 + L+ + + C NY I+KP + P Sbjct: 985 SKLLKSKFEENSYY-CNNYK-----RGIEKPHYKTVIKP 1017 >UniRef50_Q39UP7 DNA topoisomerase I:Restriction endonuclease n=3 Tax=Proteobacteria RepID=Q39UP7_GEOMG Length = 355 Score = 74.0 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 23/114 (20%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKSSADGHIVKV 58 ++ +CPKCGAE+ R + G F GCS YP C + P+ + D KV Sbjct: 232 EIFPKAVSSPNCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQAKV 291 Query: 59 ----------LEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELID 97 ++CP CG LVLRQ + G F GC+ C+ +D Sbjct: 292 TMQPTIPPVDASKKLCPQCGEELVLRQFQSGPRIGQQFYGCL---TCKKGWPVD 342 Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 25/98 (25%) Query: 56 VKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELIDKPDETAIT----- 105 K + CP CGA + R R G F GC YP+C+ + +T Sbjct: 235 PKAVSSPNCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQAKVTMQ 294 Query: 106 ------------CPQCRTGHLVQR---RSRYGKTFHSC 128 CPQC ++++ R G+ F+ C Sbjct: 295 PTIPPVDASKKLCPQCGEELVLRQFQSGPRIGQQFYGC 332 Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 27/102 (26%) Query: 105 TCPQCRT---GHLVQRRSRYGKTFHSCDRYPECQFAINFKP------------------- 142 CP+C + ++ S G+ F C YP+C+ + Sbjct: 242 NCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQAKVTMQPTIPPVD 301 Query: 143 -IAGECPECHYPLLIEKKTAQ---GVKHF-CASKQCGKPVSA 179 CP+C L++ + + G + + C + + G PV Sbjct: 302 ASKKLCPQCGEELVLRQFQSGPRIGQQFYGCLTCKKGWPVDT 343 >UniRef50_Q9KRB2 DNA topoisomerase 1 n=401 Tax=cellular organisms RepID=TOP1_VIBCH Length = 876 Score = 73.2 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL----EGQVCPACGA 69 C KCG+++V+++G+ G ++GC+ AC R + + + K C A Sbjct: 716 ECDKCGSDMVLKNGRFGKYMGCTN-DACKNTRKILKNGEVAPPKEEPVHFPELPCENSDA 774 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELI 96 VLR G G+F N+P+ T Sbjct: 775 YFVLRDGASGLFFAASNFPKSRETRAP 801 Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 50/162 (30%), Gaps = 23/162 (14%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQY-----PACDYVRPLKS--------SADG 53 V N CP C + IR+ G FLGCS Y C L D Sbjct: 598 HIVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDV 657 Query: 54 HIVKVLEGQVCPACGANL-VLRQGRFGMFIGCINYPECEHTELIDKPDETA------ITC 106 + + CP C + C N P CE + + + + C Sbjct: 658 ETAALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVEC 717 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECP 148 +C + +V + R+GK + C C+ P Sbjct: 718 DKCGS-DMVLKNGRFGK-YMGCTND-ACKNTRKILKNGEVAP 756 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 16/141 (11%) Query: 5 ALFTVRNNESCPKCGAEL--VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 +R + CP C + + K + C P C+ + + + Sbjct: 658 ETAALRAKKRCPICETAMDAYLIDDKRKLHV-CGNNPNCEGFIVEEGEFKVKGYEGPTVE 716 Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP--------QCR--TG 112 C CG+++VL+ GRFG ++GC N C++T I K E A C Sbjct: 717 -CDKCGSDMVLKNGRFGKYMGCTND-ACKNTRKILKNGEVAPPKEEPVHFPELPCENSDA 774 Query: 113 HLVQRRSRYGKTFHSCDRYPE 133 + V R G F + +P+ Sbjct: 775 YFVLRDGASG-LFFAASNFPK 794 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 31/146 (21%) Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINY-----PECEHTELIDKPDET---------- 102 V+ +CP C + +R G+F+GC Y C+ T + + Sbjct: 600 VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVET 659 Query: 103 -----AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ---------FAINFKPIAGECP 148 CP C T K H C P C+ ++ EC Sbjct: 660 AALRAKKRCPICETAMDAYLIDDKRK-LHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718 Query: 149 ECHYPLLIEKKTAQGVKHFCASKQCG 174 +C +++ K G C + C Sbjct: 719 KCGSDMVL-KNGRFGKYMGCTNDACK 743 >UniRef50_O73954 Endonuclease PI-PfuI n=2 Tax=Euryarchaeota RepID=TOP1_PYRFU Length = 1060 Score = 72.8 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 9/86 (10%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPEC 150 +KP CP+C +V+ + GK F C +P+C P C C Sbjct: 969 EKPPLIVGKCPKCGGDLIVKYNEKTGKRFVGCSNWPKCNVTYPILQRGEIIPTNKTC--C 1026 Query: 151 -HYPLLIEKKTAQGVKHFCASKQCGK 175 P++I ++ C C + Sbjct: 1027 NGAPVVIIREKDGREWEICLDMNCKE 1052 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%) Query: 14 SCPKCGAELVIRSG-KHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L+++ K G F+GCS +P C+ P+ + + C GA + Sbjct: 977 KCPKCGGDLIVKYNEKTGKRFVGCSNWPKCNVTYPILQRGE---IIPTNKTCCN--GAPV 1031 Query: 72 VLRQGRFGMFI-GCINYPECEHTELIDKP 99 V+ + + G C++ C+ I K Sbjct: 1032 VIIREKDGREWEICLDM-NCKEYNTIKKK 1059 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 54 HIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDE---TAITCPQ 108 L CP CG +L+++ F+GC N+P+C T I + E T TC Sbjct: 968 EEKPPLIVGKCPKCGGDLIVKYNEKTGKRFVGCSNWPKCNVTYPILQRGEIIPTNKTC-- 1025 Query: 109 CRTGHLVQRRSRYGKTFHSC 128 C +V R + G+ + C Sbjct: 1026 CNGAPVVIIREKDGREWEIC 1045 >UniRef50_C6A350 DNA topoisomerase I n=3 Tax=Euryarchaeota RepID=C6A350_THESM Length = 1228 Score = 72.0 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 8/89 (8%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRY-GKTFHSCDRYPECQFAINFK------PIAGE 146 E K +CP+C G LV R +R GK F C +P C P Sbjct: 1136 ENKGKEKIIVGSCPKCG-GDLVVRYNRRTGKRFVGCSNWPNCNVTYPLLQRGQIIPTGKT 1194 Query: 147 CPECHYPLLIEKKTAQGVKHFCASKQCGK 175 C EC +I+ K C C K Sbjct: 1195 CSECGNAPIIKIKERNREYEVCLDMNCNK 1223 Score = 66.7 bits (161), Expect = 4e-10, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%) Query: 14 SCPKCGAELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 SCPKCG +LV+R + F+GCS +P C+ PL + G+ C CG Sbjct: 1147 SCPKCGGDLVVRYNRRTGKRFVGCSNWPNCNVTYPLLQRGQ----IIPTGKTCSECGNAP 1202 Query: 72 VLR-QGRFGMFIGCINYPECEHTE 94 +++ + R + C++ C Sbjct: 1203 IIKIKERNREYEVCLDM-NCNKNR 1225 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Query: 38 YPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTEL 95 P + V +++ + + + CP CG +LV+R R F+GC N+P C T Sbjct: 1122 KPEEEKVIQVEADFENKGKEKIIVGSCPKCGGDLVVRYNRRTGKRFVGCSNWPNCNVTYP 1181 Query: 96 IDKPD---ETAITCPQCRTGHLVQRRSR 120 + + T TC +C +++ + R Sbjct: 1182 LLQRGQIIPTGKTCSECGNAPIIKIKER 1209 >UniRef50_C1E9E3 DNA topoisomerase n=1 Tax=Micromonas sp. RCC299 RepID=C1E9E3_9CHLO Length = 1227 Score = 71.7 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK---VLEGQVCPA 66 + CP CG L ++ + G F+GCS YP+C + R L + DG + +E P Sbjct: 817 STRRCPGCGTGRLGLKLSRTGGFIGCSNYPSCGHTRQLVNDGDGAVGGGNFPIELGTDPE 876 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 G ++ ++ G +G +I ++ PD++ T PQ Sbjct: 877 SGGDVAIQNGPYGPYI---------ELQMPSSPDDSKKTKPQ 909 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 4/53 (7%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 YP + + CP C TG L + SR G F C YP C Sbjct: 803 GGYPTVAF---DPEELSSTRRCPGCGTGRLGLKLSRTGG-FIGCSNYPSCGHT 851 >UniRef50_B6RA74 DNA topoisomerase n=6 Tax=Alphaproteobacteria RepID=B6RA74_9RHOB Length = 931 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 19/91 (20%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQY--------------PACDYVRPLKSSADGHI 55 + CPKC L ++ + G F+GCS Y P CDY R L S D Sbjct: 600 DPRKCPKCDTGRLSLKVSRFGAFVGCSNYNKDKKDGKEPNENPPHCDYTRQLTSGGDSDA 659 Query: 56 VKVLEGQ----VCPACGANLVLRQGRFGMFI 82 +G + P G + LR GRFG ++ Sbjct: 660 GAAADGPQVLGIDPETGLEVSLRTGRFGPYV 690 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 3/62 (4%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECH 151 H + CP+C TG L + SR+G F C Y + +P P C Sbjct: 590 HVFPDKEDGSDPRKCPKCDTGRLSLKVSRFG-AFVGCSNYNK-DKKDGKEPNENP-PHCD 646 Query: 152 YP 153 Y Sbjct: 647 YT 648 Score = 42.0 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 15/70 (21%) Query: 48 KSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINY--------------PECEH 92 K+ + + CP C L L+ RFG F+GC NY P C++ Sbjct: 588 KAHVFPDKEDGSDPRKCPKCDTGRLSLKVSRFGAFVGCSNYNKDKKDGKEPNENPPHCDY 647 Query: 93 TELIDKPDET 102 T + ++ Sbjct: 648 TRQLTSGGDS 657 >UniRef50_A3X5L1 Helicase IV n=1 Tax=Roseobacter sp. MED193 RepID=A3X5L1_9RHOB Length = 951 Score = 71.3 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 41/121 (33%), Gaps = 31/121 (25%) Query: 15 CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 C +CG L+ + G + C C P C CG + Sbjct: 826 CSECGGRLLPVPARDGRVWYRCEHNLMCRNYMP----------------ACSQCGIGIPT 869 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 G G+ EC H + CP+C G LV+R YG F C RYP+ Sbjct: 870 VSGASGIL-------ECSH------CGASHHECPKCSDGWLVERHGPYG-DFFGCIRYPD 915 Query: 134 C 134 C Sbjct: 916 C 916 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 13 ESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL 59 CPKC LV R G +G F GC +YP C + ++ Sbjct: 887 HECPKCSDGWLVERHGPYGDFFGCIRYPDCTGKANVSEVRSREAGQIE 934 >UniRef50_UPI00016C5644 hypothetical protein GobsU_04089 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5644 Length = 923 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 7/103 (6%) Query: 51 ADGHIVKVLEGQVCPAC-GANLVLRQGR-FGMFIGCIN--YPECEHTELIDKPD---ETA 103 D CP C +LVLRQ R G F+ C+N EC H + + D + Sbjct: 821 DDEVDPNQARRFYCPECPNGDLVLRQSRGEGWFLVCVNPQVRECSHRKRLSLEDARLKVR 880 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + +C GH + RS F C+ YP C FA + G Sbjct: 881 LQGMRCPAGHPLTARSSGHGFFLGCENYPRCDFAQGLSILEGV 923 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 CP G L RS HG FLGC YP CD+ + Sbjct: 882 QGMRCPA-GHPLTARSSGHGFFLGCENYPRCDFAQ 915 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 46/156 (29%), Gaps = 31/156 (19%) Query: 44 VRPLKSSADGHIVKVLEGQVCP---ACGANLVLRQGRFGMFIGCINYPECEHT------- 93 ++ + + V G CP A G + + G +N P Sbjct: 761 THDVEPKIGQNDIIVRTGSNCPPVFAGGGYVCV---PLGGRWVAVNSPNVTRVLWRIGFS 817 Query: 94 ----ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP--ECQFAINFKPIAG-- 145 + +D CP+C G LV R+SR F C EC Sbjct: 818 HLADDEVDPNQARRFYCPECPNGDLVLRQSRGEGWFLVCVNPQVRECSHRKRLSLEDARL 877 Query: 146 -------ECPECHYPLLIEKKTAQGVKHFCAS-KQC 173 CP +P L + + G C + +C Sbjct: 878 KVRLQGMRCPA-GHP-LTARSSGHGFFLGCENYPRC 911 >UniRef50_Q1RIM1 DNA topoisomerase 1 n=35 Tax=Rickettsiales RepID=TOP1_RICBR Length = 800 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%) Query: 10 RNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK------VLEGQ 62 ++++ CP C EL ++ GK G FL CS YP C++ + + S D + V E + Sbjct: 595 KDSKVCPSCKTGELSLKLGKFGAFLACSNYPECNFRKSIVSGNDNNEADGEAKDIVNENK 654 Query: 63 VC--PACGANLVLRQGRFGMFI 82 V G + L++G +G +I Sbjct: 655 VLGKDKEGIEIYLKKGPYGPYI 676 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 + +VCP+C L L+ G+FG F+ C NYPEC + I ++ Sbjct: 595 KDSKVCPSCKTGELSLKLGKFGAFLACSNYPECNFRKSIVSGNDN 639 Score = 48.2 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 ++ + CP C+TG L + ++G F +C YPEC F Sbjct: 593 ENKDSKVCPSCKTGELSLKLGKFG-AFLACSNYPECNF 629 >UniRef50_Q481U8 Helicase IV n=1 Tax=Colwellia psychrerythraea 34H RepID=Q481U8_COLP3 Length = 1042 Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 7 FTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK-------- 57 ++ ++ C C L R+G+ G F CS P C++ + + + + Sbjct: 922 QSLVDDLHCLACKTGLLKKRTGRFGTFYACSNSPRCEHKEKPCAKCESPMTRKRYPGFKT 981 Query: 58 ------VLEGQVCPACGANLVLRQGRFGMFIGCINY 87 C C A +VLR + G F GC NY Sbjct: 982 CLNDLCKSLIPTCSLCDAEMVLRTSKKGEFWGCRNY 1017 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 14/92 (15%) Query: 86 NYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 N EC T+ + + C C+TG L +R R+G TF++C P C+ Sbjct: 914 NEFECTATQSL----VDDLHCLACKTGLLKKRTGRFG-TFYACSNSPRCEHK------EK 962 Query: 146 ECPECHYPLLIEKKTAQGVKHFCASKQCGKPV 177 C +C P+ ++ C + C + Sbjct: 963 PCAKCESPMTRKRYPGFKT---CLNDLCKSLI 991 Score = 59.0 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 22/138 (15%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 D+ L +++ C AC L R GRFG F C N P CEH Sbjct: 908 DHQIELNEFECTATQSLVDDLHCLACKTGLLKKRTGRFGTFYACSNSPRCEH-------- 959 Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT 160 C +C + +R F +C C+ I C C +++ + + Sbjct: 960 -KEKPCAKCESPMTRKRYPG----FKTCLND-LCKSLIP------TCSLCDAEMVL-RTS 1006 Query: 161 AQGVKHFCASKQCGKPVS 178 +G C + + P+S Sbjct: 1007 KKGEFWGCRNYKGNDPMS 1024 >UniRef50_C0QM75 Multiple domain fusion protein (Zn-finger domain associated with topoisomerase type I/adhesin of Type V secretory pathway) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM75_DESAH Length = 502 Score = 69.4 bits (168), Expect = 6e-11, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEK 158 E A+ CP C G +V + KT+++C C+F KP ECP C P L E Sbjct: 393 EAELAMPCPICLDGKIVSETTSKNKTYYTCSNR-ACRFVSWEKPYHFECPLCKNPFLTEF 451 Query: 159 KTAQGVK-HFCASKQCGK 175 T G K C C Sbjct: 452 TTPSGDKGLKCPRASCTY 469 >UniRef50_B1L3G6 DNA topoisomerase I n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3G6_KORCO Length = 710 Score = 69.4 bits (168), Expect = 6e-11, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 16/118 (13%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP+CG +L +R +G F+ CS YP CD L + + EG+ C CG LV Sbjct: 596 KCPECGGDLNMRKSSYGYFIVCSNYPEKCDVKFNLFKN------ERFEGKFCE-CGLPLV 648 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 GR N +T I D T + C +C G +V ++ ++G + C+ Sbjct: 649 --SGRIKTK---SNRGRG-YTRCIANCDRTPLRCAKCG-GPMVAKQGKFG-VYLKCEN 698 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYP-ECQFAINFKPIA----GECPECHYPLLIEK 158 CP+C G L R+S YG F C YP +C N C EC PL+ + Sbjct: 595 GKCPECG-GDLNMRKSSYG-YFIVCSNYPEKCDVKFNLFKNERFEGKFC-ECGLPLVSGR 651 Query: 159 KTAQ 162 + Sbjct: 652 IKTK 655 Score = 41.6 bits (96), Expect = 0.012, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQ 37 R C KCG +V + GK G +L C Sbjct: 671 RTPLRCAKCGGPMVAKQGKFGVYLKCEN 698 >UniRef50_B1VJ64 DNA topoisomerase n=9 Tax=Gammaproteobacteria RepID=B1VJ64_PROMH Length = 772 Score = 69.0 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 10/123 (8%) Query: 11 NNESCPKCGAE-LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV------ 63 N CP C L+ R G++G F GCS YP C P K+ + EG V Sbjct: 631 NGTPCPVCQKGFLIKRKGQNGFFWGCSCYPECKTAFPDKNGQPVTEKQPNEGAVARLNVM 690 Query: 64 CPACGANLVLRQGRFGMFI-GCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 CP+C +++R G F GC E ++ +T + +++ G Sbjct: 691 CPSCSNEIIIR--PKGYFCTGCEFKIWAEFCSKKLTQNQVEKLIKDGKTAVIKGFKTKAG 748 Query: 123 KTF 125 KTF Sbjct: 749 KTF 751 Score = 55.9 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 24/95 (25%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---PIAGE------------ 146 CP C+ G L++R+ + G F C YPEC+ A K P+ + Sbjct: 631 NGTPCPVCQKGFLIKRKGQNG-FFWGCSCYPECKTAFPDKNGQPVTEKQPNEGAVARLNV 689 Query: 147 -CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 CP C ++I K +FC C + AE Sbjct: 690 MCPSCSNEIIIRPKG-----YFCT--GCEFKIWAE 717 >UniRef50_Q1Q866 UvrD/REP helicase n=4 Tax=Gammaproteobacteria RepID=Q1Q866_PSYCK Length = 955 Score = 68.2 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 18/110 (16%) Query: 2 AKSALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 +KS R CP C L + G++G F CS C + + E Sbjct: 842 SKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGKGCSVGKARVCTKCEAPSVDRE 901 Query: 61 GQ-------------VCPACGANLVLRQGRFGMFIGCINY--PE--CEHT 93 + +C CG + +R+ +FG F GC Y P+ C++T Sbjct: 902 HESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNT 951 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECH 151 ++ + CP C G+L + +YG +F+SC C A C +C Sbjct: 841 FSKSFQERHRKIFKCPNCVNGYLRLIKGQYG-SFYSCSSGKGCSVG-----KARVCTKCE 894 Query: 152 YPLLIEKKTAQGVKHFCASKQCG 174 P + + + C ++ CG Sbjct: 895 APSVDREHES-----LCNNRDCG 912 >UniRef50_A7IJK3 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IJK3_XANP2 Length = 170 Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 12/103 (11%) Query: 15 CPKCGAELVIRS-GKHGPFLGCSQYPACDYVRPL---------KSSADGHIVKVLEGQVC 64 CPKCG + R G++GPF CS +P CD+ R + S+ + G C Sbjct: 61 CPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYC 120 Query: 65 PACG-ANLVLRQG-RFGMFIGCINYPECEHTELIDKPDETAIT 105 P CG ++V+R G + F+ C YP C+ T +D E T Sbjct: 121 PTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEGGAT 163 Score = 58.6 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 17/94 (18%) Query: 64 CPACG-ANLVLRQGRFGMFIGCINYPECEHTELID----------------KPDETAITC 106 CP CG + G++G F C +P C+ I +P C Sbjct: 61 CPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDYC 120 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 P C G +V R + F +C YP C+ Sbjct: 121 PTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAAL 154 Score = 41.2 bits (95), Expect = 0.016, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 12 NESCPKCG-AELVIRSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + CP CG +V+RSG + PFL CS YP+C L +G + Sbjct: 117 GDYCPTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALDGGTEGGATRRQT 167 >UniRef50_D2J7M2 Putative uncharacterized protein n=2 Tax=Staphylococcus aureus RepID=D2J7M2_STAAU Length = 201 Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 21/37 (56%), Positives = 28/37 (75%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 NNE CP+C +LV+R+GK+G FLGCS YP C Y + + Sbjct: 165 NNEKCPRCNHKLVVRTGKNGQFLGCSNYPNCKYTKNI 201 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 40 ACDYVRPLKSSADGHIVKVLEG----QVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 ACD V ++S I+ + + CP C LV+R G+ G F+GC NYP C++T+ Sbjct: 141 ACDVVMKDRTSLSKWIISINPDFSNNEKCPRCNHKLVVRTGKNGQFLGCSNYPNCKYTKN 200 Query: 96 I 96 I Sbjct: 201 I 201 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + I+ CP+C +V R+ F C YP C++ N Sbjct: 154 KWIISINPDFSNNEKCPRCNHKLVV--RTGKNGQFLGCSNYPNCKYTKN 200 >UniRef50_D2EGP7 DNA topoisomerase n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGP7_9EURY Length = 703 Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 9/82 (10%) Query: 14 SCPKCGAEL--VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 +CPK G +L V+ H F+GCS YP C + PL S I Q CP CG ++ Sbjct: 612 TCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQSGYFFISP----QSCPKCGIHM 667 Query: 72 VLRQGRFGM--FIGCINYPECE 91 + + +I C+N P C+ Sbjct: 668 IEWHAKESKRTYIFCVN-PACK 688 Score = 65.5 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLL 155 TCP+ + + K F C YP+C F + CP+C ++ Sbjct: 609 IFGTCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQSGYFFISPQSCPKCGIHMI 668 Query: 156 I-EKKTAQGVKHFCASKQCG 174 K ++ FC + C Sbjct: 669 EWHAKESKRTYIFCVNPACK 688 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 63 VCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPD---ETAITCPQCRTGHLV-- 115 CP G L L + F+GC +YP+C + + + +CP+C + Sbjct: 612 TCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQSGYFFISPQSCPKCGIHMIEWH 671 Query: 116 QRRSRYGKTFHSCDRYPECQ 135 + S+ F C P C+ Sbjct: 672 AKESKRTYIF--CVN-PACK 688 >UniRef50_A7VHI2 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VHI2_9CLOT Length = 248 Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 CPKCG ++V + GK+G FLGC+ YP C Y + +K Sbjct: 208 NKEVQRICPKCGGKIVYKRGKYGKFLGCTNYPNCRYTKEMK 248 Score = 65.9 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 15/90 (16%) Query: 23 VIRSGKHGPFLGCSQYPACD---------------YVRPLKSSADGHIVKVLEGQVCPAC 67 VI+S K F D +V+ +K + + ++CP C Sbjct: 159 VIKSYKEPVFTQDEIKQLADRIKTINEASSDLRVGHVKRIKEAQNIRKNNKEVQRICPKC 218 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELID 97 G +V ++G++G F+GC NYP C +T+ + Sbjct: 219 GGKIVYKRGKYGKFLGCTNYPNCRYTKEMK 248 >UniRef50_C3QAX1 NERD domain-containing protein n=6 Tax=Bacteroides RepID=C3QAX1_9BACE Length = 246 Score = 67.0 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 22/36 (61%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 N CP+CG L++R GK+G F GCS +P C + Sbjct: 210 NQGVCPQCGGHLILRKGKYGTFYGCSNFPTCKFTIN 245 Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats. Identities = 17/31 (54%), Positives = 24/31 (77%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHT 93 VCP CG +L+LR+G++G F GC N+P C+ T Sbjct: 213 VCPQCGGHLILRKGKYGTFYGCSNFPTCKFT 243 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CPQC GHL+ R+ +YG TF+ C +P C+F IN Sbjct: 214 CPQCG-GHLILRKGKYG-TFYGCSNFPTCKFTIN 245 >UniRef50_P40114 DNA topoisomerase 1 n=47 Tax=Bacillus cereus group RepID=TOP1_BACAN Length = 870 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 15/136 (11%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV-- 72 CP CG +++ G F GCS +P C+ P + ++ + Sbjct: 605 CP-CGNGIIL---DRGKFFGCSNHPNCNKGLPKRVKEKTIPTAQVKKLFEENKTDIIKGF 660 Query: 73 LRQGR-FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 G+ F ++ +N E + CP+C+ G ++ R KTF C Y Sbjct: 661 KSNGKEFSAYLAFVN-GEVSFNLPSVEELSLG-QCPKCQKGKILNR-----KTFFGCSEY 713 Query: 132 PE-CQFAINFKPIAGE 146 C F + K + Sbjct: 714 QNGCDFMLPAKIKGKK 729 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 29/143 (20%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKC ++ F GCS+Y CD++ P K ++ V + Sbjct: 693 CPKCQKGKIL---NRKTFFGCSEYQNGCDFMLPAKIKGKKLSDSQIKKLVNNHVTDFING 749 Query: 74 RQGRFGMFIG----------CINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 G G F C +P D T CP C++ ++ GK Sbjct: 750 FSGEKGEFTAAIRLKTDLSICFEFP--------TTDDRTVGKCPLCQSRVII------GK 795 Query: 124 TFHSCDRYPE-CQFAINFKPIAG 145 T + C++Y C F ++ + Sbjct: 796 TNYLCEQYKRGCDFIVSGMILEK 818 >UniRef50_C2XKX2 DNA topoisomerase n=7 Tax=Bacillus cereus group RepID=C2XKX2_BACCE Length = 894 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 15/136 (11%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV-- 72 CP CG +++ GK F GCS +P C P K ++ + Sbjct: 629 CP-CGNGIILDRGK---FFGCSNHPNCSIGLPKKIKDKTIPAVQVKKLFEENKTDLMKGF 684 Query: 73 LRQGR-FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 G+ F ++ IN E + CP+C+ GH+++R TF C Y Sbjct: 685 KSNGKEFSAYLAFIN-GEVSFNLPTVEELSLG-QCPKCQNGHILKRD-----TFFGCSAY 737 Query: 132 PE-CQFAINFKPIAGE 146 C FAI+ K + Sbjct: 738 QSGCNFAISAKIKEKK 753 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 13/136 (9%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKC +++ F GCS Y + C++ K ++ + + Sbjct: 717 CPKCQNGHILKRD---TFFGCSAYQSGCNFAISAKIKEKKLSDSQVKKLLKNRVTDFIHG 773 Query: 74 RQGRFGMFIGCINYPECEHT--ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 +G +G F I E E D T CP C+ +V GKT + C+ Y Sbjct: 774 FKGEYGEFTAAIRLKEDLSICFERPTTDDRTIGKCPLCQGRVIV------GKTTYLCEHY 827 Query: 132 PE-CQFAINFKPIAGE 146 + C+F ++ + + Sbjct: 828 KKPCEFIVSGTILKKK 843 Score = 38.5 bits (88), Expect = 0.094, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 19/128 (14%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPEC-----EHTELIDKPDETAITCPQCRTGHLVQRR 118 CP CG ++L +G+ F GC N+P C + + P + L++ Sbjct: 629 CP-CGNGIILDRGK---FFGCSNHPNCSIGLPKKIKDKTIPAVQVKKLFEENKTDLMKGF 684 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAG----ECPECHYPLLIEKKTAQGVKHFCA--SKQ 172 GK F + + + + N + +CP+C ++ + C+ Sbjct: 685 KSNGKEFSAYLAFINGEVSFNLPTVEELSLGQCPKCQNGHIL----KRDTFFGCSAYQSG 740 Query: 173 CGKPVSAE 180 C +SA+ Sbjct: 741 CNFAISAK 748 >UniRef50_A5UN47 Helicase, UvrD/REP family n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5UN47_METS3 Length = 661 Score = 67.0 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 13/102 (12%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG---PFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 S L + + E CP C L+ R +H PFLGC+ + R G ++ + Sbjct: 566 SELEDLDDIEYCPSCDGILIKR-YRHSDGHPFLGCTNF------RKTGCRGKGKKLEYI- 617 Query: 61 GQVCPACGANLVLR-QGR-FGMFIGCINYPECEHTELIDKPD 100 G+ CP CG LV R G +F+GC +P+C HTE K Sbjct: 618 GKTCPKCGKPLVKRVNGEDNSLFVGCSGFPKCRHTEPFKKEM 659 Score = 66.7 bits (161), Expect = 4e-10, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 15/146 (10%) Query: 9 VRNNESCPKCGAELVI-----RSGKHGPFLGCSQ-----YPACDYVRPLKSSADGHIVKV 58 + CP C +V+ GK L CS + C++ S + + Sbjct: 515 IPTKLKCPVCKTGVVLLESFWNKGKLNRVLKCSHNMAPPFNRCNWEGGYYGSELEDLDDI 574 Query: 59 LEGQVCPACGANLVLR--QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 + CP+C L+ R F+GC N+ + K + TCP+C + + Sbjct: 575 ---EYCPSCDGILIKRYRHSDGHPFLGCTNFRKTGCRGKGKKLEYIGKTCPKCGKPLVKR 631 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKP 142 F C +P+C+ FK Sbjct: 632 VNGEDNSLFVGCSGFPKCRHTEPFKK 657 Score = 48.2 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 19/146 (13%) Query: 50 SADGHIVKVLEGQVCPACGANLVLR-----QGRFGMFIGCIN-----YPECE----HTEL 95 +G + CP C +VL +G+ + C + + C + Sbjct: 507 EKNGERYVIPTKLKCPVCKTGVVLLESFWNKGKLNRVLKCSHNMAPPFNRCNWEGGYYGS 566 Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE--CQ-FAINFKPIAGECPECHY 152 + + CP C + + R G F C + + C+ + I CP+C Sbjct: 567 ELEDLDDIEYCPSCDGILIKRYRHSDGHPFLGCTNFRKTGCRGKGKKLEYIGKTCPKCGK 626 Query: 153 PLLIEKKTAQGVKHF-CAS-KQCGKP 176 PL+ C+ +C Sbjct: 627 PLVKRVNGEDNSLFVGCSGFPKCRHT 652 >UniRef50_B0P1A6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P1A6_9CLOT Length = 949 Score = 66.3 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 12/82 (14%) Query: 62 QVCPACGANLVLRQGRFG-MFIGCINYPECEHTELI---------DKPDETAITCPQCRT 111 + CP CG + L++ G FI CI YP C+ TE + ++ T C +C+ Sbjct: 860 KKCPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCVRCKY 919 Query: 112 GHLVQRRSRYGKTFHS-CDRYP 132 L +SRYG + C YP Sbjct: 920 -SLTAEKSRYGGGLYIHCCGYP 940 Score = 65.5 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Query: 9 VRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSS--ADGHIVKVLEGQVCP 65 +R ++ CPKCG + ++ G F+ C YP C +K+ + GQ C Sbjct: 856 IRLHKKCPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCV 915 Query: 66 ACGANLVLRQGRF--GMFIGCINYP 88 C +L + R+ G++I C YP Sbjct: 916 RCKYSLTAEKSRYGGGLYIHCCGYP 940 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 18/88 (20%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------------IAGECPECHY 152 CP+C + ++S GK F SC YP C+ K +C C Y Sbjct: 861 KCPKCGKPMQL-KKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCVRCKY 919 Query: 153 PLLIEK-KTAQGVKHFCASKQCGKPVSA 179 L EK + G+ C CG PV + Sbjct: 920 SLTAEKSRYGGGLYIHC----CGYPVHS 943 >UniRef50_B7DM26 NERD domain protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DM26_9BACL Length = 246 Score = 66.3 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 19/33 (57%), Positives = 23/33 (69%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CP+CG EL IR G+ G F GCS YP C + RP+ Sbjct: 214 CPRCGGELRIRKGQRGEFYGCSNYPRCRFTRPV 246 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 26/55 (47%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 D R + + L +CP CG L +R+G+ G F GC NYP C T + Sbjct: 192 DKARQEHIKGIREMKRQLAANICPRCGGELRIRKGQRGEFYGCSNYPRCRFTRPV 246 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 K A CP+C G L R+ + G+ F+ C YP C+F Sbjct: 206 KRQLAANICPRCG-GELRIRKGQRGE-FYGCSNYPRCRFTRP 245 >UniRef50_Q28MI5 DNA topoisomerase n=13 Tax=Rhodobacterales RepID=Q28MI5_JANSC Length = 907 Score = 66.3 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 11 NNESCPKCG-AELVIRSGKHG-PFLGCSQYPACDYVRPL---KSSADGHIVKVLEGQVCP 65 + CP CG L +R+ + G F+GCS YP C Y RP A+ + + Sbjct: 628 DPRLCPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGPPDPEAEASAIPPDGKLLGE 687 Query: 66 ACGANLVLRQGRFGMFI 82 G + + +GRFG ++ Sbjct: 688 DQGDEIRIFKGRFGPYV 704 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 20/51 (39%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 H CP C G L R +R G F C YPEC++ F P Sbjct: 618 HLFPDPGDGTDPRLCPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGP 668 Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 48 KSSADGHIVKVLEGQVCPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAIT 105 + + ++CP CG L +R R G FIGC YPEC +T PD A Sbjct: 616 EPHLFPDPGDGTDPRLCPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGPPDPEAEA 675 Query: 106 CPQCRTGHLV 115 G L+ Sbjct: 676 SAIPPDGKLL 685 >UniRef50_B1M9R9 DNA topoisomerase I n=4 Tax=root RepID=B1M9R9_METRJ Length = 788 Score = 66.3 bits (160), Expect = 5e-10, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 53/157 (33%), Gaps = 30/157 (19%) Query: 9 VRNNESCPKCGAELV--IRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 R CP+CG L R G C AC ++ D K + C Sbjct: 617 ERTAHPCPRCGETLRRFKRKNGGGLVWVCPA-EAC------ETFLDDVGGKPVALHTCTK 669 Query: 67 CGANLVLRQ----------GRFGMFIGCINYPECEHTELIDKPDETAIT---CPQCRTGH 113 C A L Q G FG F C + C+ DK AI CP+C G Sbjct: 670 CNAPLRRYQKKDRETGKPTGAFGWF--CTDTENCKTFMDDDKGRPVAIKTAPCPKC--GK 725 Query: 114 LVQRRSRYGKTFHSCDRYPE-CQFAINF---KPIAGE 146 + RR + C Y E C+ ++ KP+ Sbjct: 726 AMYRRKGDHGFWWGCSGYREGCKTIMDDDKGKPVPRA 762 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 55/175 (31%), Gaps = 27/175 (15%) Query: 14 SCPKCGAELVIRSGKHGP--FLGCS-QYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CPKCG + R K G F C+ + C + CP CG Sbjct: 575 KCPKCGTGM-RRYAKPGKSPFWRCTAEAETCGHYMDDDKGKPVERTA----HPCPRCGET 629 Query: 71 LVL--RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF--- 125 L R+ G+ C + + TC +C ++R + + Sbjct: 630 LRRFKRKNGGGLVWVCPAEACETFLDDVGGKPVALHTCTKCNAP--LRRYQKKDRETGKP 687 Query: 126 -----HSCDRYPECQFAINF---KPIA---GECPECHYPLLIEKKTAQGVKHFCA 169 C C+ ++ +P+A CP+C + +K G C+ Sbjct: 688 TGAFGWFCTDTENCKTFMDDDKGRPVAIKTAPCPKCGKAM-YRRKGDHGFWWGCS 741 Score = 59.0 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 11/88 (12%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGK-TFHSCD-------RYPECQFAINFKPIAGE 146 + CP+C TG ++R ++ GK F C Y + + A Sbjct: 565 AVSGEFTPRFKCPKCGTG--MRRYAKPGKSPFWRCTAEAETCGHYMDDDKGKPVERTAHP 622 Query: 147 CPECHYPLLI-EKKTAQGVKHFCASKQC 173 CP C L ++K G+ C ++ C Sbjct: 623 CPRCGETLRRFKRKNGGGLVWVCPAEAC 650 >UniRef50_C7DGI7 DNA topoisomerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGI7_9EURY Length = 727 Score = 65.9 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECH 151 K CP+ G LV +RS GK F +C YP+C P C CH Sbjct: 590 KSANVLGKCPK-DGGDLVIKRSFRGKQFVACSNYPKCTNTYPLPQNAKIVPTGNACEFCH 648 Query: 152 YPLLIEKKTAQGVKHFCASKQC 173 P++ + + C Sbjct: 649 TPIVKIIRRGKPPFEIDLDPNC 670 Score = 63.2 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 14 SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CPK G +LVI+ G F+ CS YP C PL +A V G C C +V Sbjct: 597 KCPKDGGDLVIKRSFRGKQFVACSNYPKCTNTYPLPQNAK----IVPTGNACEFCHTPIV 652 Query: 73 --LRQGR 77 +R+G+ Sbjct: 653 KIIRRGK 659 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 8/116 (6%) Query: 23 VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-F 81 V++ GK + + + VL CP G +LV+++ G F Sbjct: 559 VLKKGKEVLLTAIETFNSNKEKISEEMKESFKSANVL--GKCPKDGGDLVIKRSFRGKQF 616 Query: 82 IGCINYPECEHTELIDKPD---ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 + C NYP+C +T + + T C C T + + R GK D P C Sbjct: 617 VACSNYPKCTNTYPLPQNAKIVPTGNACEFCHTP--IVKIIRRGKPPFEIDLDPNC 670 >UniRef50_Q1UZD4 DNA topoisomerase n=4 Tax=Bacteria RepID=Q1UZD4_PELUB Length = 863 Score = 65.5 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 12 NESCPKCG-AELVIRSG-KHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC--PAC 67 N C C L +++ + G F+GCS YP C + RPL + ++ E + Sbjct: 596 NRQCKLCDSGSLSLKNSFRGGAFIGCSNYPDCKFTRPLSKAKAAAQSQLAEPKFIGKHEN 655 Query: 68 GANLVLRQGRFGMFI 82 G ++ L+ GRFG ++ Sbjct: 656 GNDMYLKNGRFGPYL 670 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 17/44 (38%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 D C C +G L + S G F C YP+C+F Sbjct: 590 DADGNINRQCKLCDSGSLSLKNSFRGGAFIGCSNYPDCKFTRPL 633 >UniRef50_A8II62 DNA topoisomerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8II62_CHLRE Length = 772 Score = 65.5 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%) Query: 10 RNNESCPKCG-AELVIRSGKHGPFLGCSQYPA----CDYVRPLKSSADGHIVKVLE---- 60 R+ CPKCG LV++ ++G F+GCS + CD+ RPL S + Sbjct: 621 RDPRRCPKCGVGRLVLKPSRYGGFIGCSNFADEALQCDFARPLLPSEGADGGSCVPFNAT 680 Query: 61 ---GQVCPACGANLVLRQGRFGMFI 82 P G + +R G +G+++ Sbjct: 681 ERLLGSHPDTGQPVYVRLGPYGLYV 705 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPE----CQFAINFKPIAGE 146 CP+C G LV + SRYG F C + + C FA P G Sbjct: 625 RCPKCGVGRLVLKPSRYGG-FIGCSNFADEALQCDFARPLLPSEGA 669 >UniRef50_B6YTB3 DNA topoisomerase n=4 Tax=Thermococcus RepID=B6YTB3_THEON Length = 717 Score = 65.5 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 10/91 (10%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRY-GKTFHSCDRYPECQFAINFK------PI 143 + E +K CP+C G LV R +R GK F C +P+C P Sbjct: 623 KTIEKGEKTPLVVGKCPKCG-GDLVVRYNRKTGKRFVGCSNWPKCNVTYPLLQRGRIIPT 681 Query: 144 AGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 C C +++ + C C Sbjct: 682 NKTC--CDGAPVVKIREKGREYEICLDMNCK 710 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%) Query: 14 SCPKCGAELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +LV+R + F+GCS +P C+ PL + + C GA + Sbjct: 637 KCPKCGGDLVVRYNRKTGKRFVGCSNWPKCNVTYPLLQRGR----IIPTNKTC-CDGAPV 691 Query: 72 VLRQGRFGMFIGCINYPECE 91 V + + + C++ C+ Sbjct: 692 VKIREKGREYEICLDM-NCK 710 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDET 102 + +K + + L CP CG +LV+R R F+GC N+P+C T + + Sbjct: 619 KDVKKTIEKGEKTPLVVGKCPKCGGDLVVRYNRKTGKRFVGCSNWPKCNVTYPLLQRGRI 678 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSC 128 T C G V + G+ + C Sbjct: 679 IPTNKTCCDGAPVVKIREKGREYEIC 704 >UniRef50_C5DA42 NERD domain protein n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA42_GEOSW Length = 262 Score = 65.5 bits (158), Expect = 8e-10, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 K ++ N CPKCG L++R GK+G F GC+ YP C + + + Sbjct: 217 QKQTEQHIQQNR-CPKCGGVLIVRKGKYGTFKGCNNYPKCKFTQSI 261 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 +++ +++ + + + CP CG L++R+G++G F GC NYP+C+ T+ I Sbjct: 208 RHMQAIQTKQKQTEQHIQQNR-CPKCGGVLIVRKGKYGTFKGCNNYPKCKFTQSI 261 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CP+C G L+ R+ +YG TF C+ YP+C+F + Sbjct: 228 RCPKCG-GVLIVRKGKYG-TFKGCNNYPKCKFTQS 260 >UniRef50_Q3BT95 DNA topoisomerase n=14 Tax=Gammaproteobacteria RepID=Q3BT95_XANC5 Length = 670 Score = 65.1 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + S V + +CP+CGA RSGK GPF CS+YP C P++S + Sbjct: 605 SASLSIKVPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRVASRSRR 664 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 11/69 (15%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 +KV G CP CGA R G+ G F C YP+C+ T ++ V Sbjct: 610 IKVPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGTLPVESGTSKR-----------V 658 Query: 116 QRRSRYGKT 124 RSR G Sbjct: 659 ASRSRRGGR 667 Score = 48.9 bits (115), Expect = 9e-05, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CPQC +RS F SC RYP+C+ + + Sbjct: 615 GPACPQCGAP--THQRSGKSGPFWSCSRYPDCKGTLPVE 651 >UniRef50_C6XEP4 DNA topoisomerase I n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEP4_METSD Length = 590 Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 23/37 (62%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 SCPKCG +V R+G GPFLGCS YP C + L Sbjct: 553 SCPKCGKGMVQRTGSRGPFLGCSGYPKCKETQQLPKG 589 Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 22/43 (51%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK 98 CP CG +V R G G F+GC YP+C+ T+ + K Sbjct: 546 PAPSTVGSCPKCGKGMVQRTGSRGPFLGCSGYPKCKETQQLPK 588 Score = 48.2 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 E+ T +CP+C G +VQR G F C YP+C+ Sbjct: 542 EIPRPAPSTVGSCPKCGKG-MVQRTGSRG-PFLGCSGYPKCKETQQLPK 588 >UniRef50_Q4QPE8 DNA topoisomerase n=23 Tax=Proteobacteria RepID=Q4QPE8_HAEI8 Length = 686 Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 18/41 (43%), Positives = 26/41 (63%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG 53 CPKCGA ++ R+GK+G F GCS YP C ++ + S + Sbjct: 620 RKCPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKNT 660 Score = 60.9 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 26/44 (59%) Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 +E + CP CGA ++ R G+ G F GC YP C+H E ID T Sbjct: 617 IEIRKCPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKNT 660 Score = 48.9 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + + + CP+C + +R+ F C YP CQ N Sbjct: 610 KGMSLGNIEIRKCPKCGAPMI--KRNGKNGAFFGCSAYPNCQHIEN 653 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 20/34 (58%), Positives = 24/34 (70%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CP+CG EL R+GK GPF GCS YPAC Y + + Sbjct: 229 VCPRCGGELTKRNGKFGPFYGCSNYPACRYTKNI 262 Score = 62.4 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 27 GKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCIN 86 G H F C C G ++K + VCP CG L R G+FG F GC N Sbjct: 200 GAHRAFNDCVMNQIC-------YEHMGKLLKDADIPVCPRCGGELTKRNGKFGPFYGCSN 252 Query: 87 YPECEHTELI 96 YP C +T+ I Sbjct: 253 YPACRYTKNI 262 Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +G F C+ C D CP+C G L +R ++G F+ C YP C Sbjct: 199 EGAHRAFNDCVMNQICYEHMGKLLKDADIPVCPRCG-GELTKRNGKFG-PFYGCSNYPAC 256 Query: 135 QFAIN 139 ++ N Sbjct: 257 RYTKN 261 >UniRef50_C6PBC0 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBC0_CLOTS Length = 905 Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACD 42 + KS ++ CPKCG ++IR GK+ FLGCS YP C Sbjct: 858 LNKSNGIGDVVDKRCPKCGNPMIIRKGKYSIFLGCSNYPICK 899 Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 27/48 (56%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECE 91 + + + + + CP CG +++R+G++ +F+GC NYP C+ Sbjct: 852 IIKYLELNKSNGIGDVVDKRCPKCGNPMIIRKGKYSIFLGCSNYPICK 899 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 6/51 (11%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKT--FHSCDRYPECQFAINFK 141 + D CP+C ++ R GK F C YP C+ A+ K Sbjct: 859 NKSNGIGDVVDKRCPKCGNPMII----RKGKYSIFLGCSNYPICKCAVGLK 905 >UniRef50_C7RD81 NERD domain protein n=4 Tax=Anaerococcus RepID=C7RD81_ANAPD Length = 255 Score = 64.7 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 24/37 (64%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA 51 CPKCG +LV R GK+G F+GCS +P C +V + Sbjct: 219 CPKCGGKLVEREGKYGKFIGCSNFPKCRFVVSQNKKS 255 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 +CP CG LV R+G++G FIGC N+P+C +K Sbjct: 218 ICPKCGGKLVEREGKYGKFIGCSNFPKCRFVVSQNKKS 255 Score = 52.0 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 A CP+C G LV+R +YGK F C +P+C+F ++ Sbjct: 216 ANICPKCG-GKLVEREGKYGK-FIGCSNFPKCRFVVS 250 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 23/34 (67%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CPKCG E++ R+G++G F GC +P C Y + + Sbjct: 186 VCPKCGGEMIRRNGRYGEFWGCGNFPKCRYTQNI 219 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 24/34 (70%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 VCP CG ++ R GR+G F GC N+P+C +T+ I Sbjct: 186 VCPKCGGEMIRRNGRYGEFWGCGNFPKCRYTQNI 219 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 84 CINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 C+ +C + CP+C G +++R RYG+ F C +P+C++ N Sbjct: 165 CVMNQKCFEEMAKLQKKSVVFVCPKCG-GEMIRRNGRYGE-FWGCGNFPKCRYTQN 218 >UniRef50_A1WZY5 DNA topoisomerase III n=6 Tax=Campylobacter RepID=A1WZY5_CAMJJ Length = 730 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 14/119 (11%) Query: 1 MAKSALFTVRNNES-----CPKCGAE-LVIRSGKHGPFLGCSQY-PACDYVRPLKSSADG 53 + K+ F + +NE+ CP+C L R GK+G F GCS++ C + P Sbjct: 611 IDKNQEFKILDNENKPKIQCPQCNKGFLTKRKGKYGNFWGCSEFKQGCKAIYPDNKGTPN 670 Query: 54 HIVKVLEG---QVCPACGANLVLR-QGRFG--MFIGCINYPE-CEHTELIDKPDETAIT 105 K CP C + R + + G + GC + + C+ D I Sbjct: 671 FETKQASNDTTHKCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYDDNGKPKIIN 729 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 17/95 (17%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE-CQFAINFKP---------- 142 +++D ++ I CPQC G L +R+ +YG F C + + C+ Sbjct: 618 KILDNENKPKIQCPQCNKGFLTKRKGKYG-NFWGCSEFKQGCKAIYPDNKGTPNFETKQA 676 Query: 143 ---IAGECPECHYPLLIEKKTAQG--VKHFCASKQ 172 +CP+C+ L K+ G C+ + Sbjct: 677 SNDTTHKCPQCNKGFLQRIKSKNGNSWWWGCSEFK 711 >UniRef50_A4RYV6 DNA topoisomerase (Fragment) n=5 Tax=cellular organisms RepID=A4RYV6_OSTLU Length = 840 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 19/93 (20%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKS--------SADGHIVKVL 59 V CP C L ++ K G F+GCS+YP C + PL + D V + Sbjct: 677 VSEARRCPSCKIGRLGLKPSKAGGFIGCSRYPECGFTHPLHPIRGAIVSDTDDPDFVATV 736 Query: 60 EGQ----------VCPACGANLVLRQGRFGMFI 82 E V PA G + LR G +G ++ Sbjct: 737 EDPDAVMYPKVLGVDPATGKEISLRLGPYGPYL 769 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 D A CP C+ G L + S+ G F C RYPEC F PI G Sbjct: 674 DDVVSEARRCPSCKIGRLGLKPSKAGG-FIGCSRYPECGFTHPLHPIRGA 722 >UniRef50_A8SXH4 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SXH4_9FIRM Length = 1162 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 + + CP+CG +LV RSGK G F+GCS +P C + + + Sbjct: 1125 KMSMICPECGKKLVERSGKFGKFIGCSGFPKCRFTQSV 1162 Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 + + +CP CG LV R G+FG FIGC +P+C T+ + Sbjct: 1114 DKTEEAKSAPAKMSMICPECGKKLVERSGKFGKFIGCSGFPKCRFTQSV 1162 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + E P + ++ CP+C LV+R ++GK F C +P+C+F + Sbjct: 1115 KTEEAKSAPAKMSMICPECGK-KLVERSGKFGK-FIGCSGFPKCRFTQS 1161 >UniRef50_A6DJX4 DNA topoisomerase n=2 Tax=Bacteria RepID=A6DJX4_9BACT Length = 897 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 + + CPKC + +V + GK GPF CS +P C + Sbjct: 851 EKTDVKCPKCDSPIVKKVGKRGPFYACSGFPKCKNLANSLDK 892 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 +G + P A L GR+ I +PE ++T + CP+C + +V++ Sbjct: 811 KGSLTPRQSAALKKCVGRYKEKIPAELFPEGLADAKSGGEEKTDVKCPKCDSP-IVKKVG 869 Query: 120 RYGKTFHSCDRYPECQFAIN 139 + G F++C +P+C+ N Sbjct: 870 KRG-PFYACSGFPKCKNLAN 888 Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 P + + CP C + +V + G+ G F C +P+C++ Sbjct: 838 FPEGLADAKSGGEEKTDVKCPKCDSPIVKKVGKRGPFYACSGFPKCKNLAN 888 >UniRef50_UPI000174264A helicase, UvrD/REP family protein n=2 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174264A Length = 692 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 100 DETAITCPQCRTGHLVQRR-SRYGKTFHSCDRYPECQFAINF-KPIAGE--CPECHYPL 154 + + CP C+TG LV R+ S+ GK F C YP C + N + ++ CP C Sbjct: 627 ETDLVNCPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYNNIEILSKPILCPACQSGF 685 Score = 45.9 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 64 CPAC--GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTG 112 CP C G ++ + + G F+GC +YP C + + I CP C++G Sbjct: 633 CPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYNNIEILSKPILCPACQSG 684 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 10/62 (16%) Query: 14 SCPKCG-AELVIRS-GKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 +CP C LVIR + G F+GCS YP C+ I + + +CPAC + Sbjct: 632 NCPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYNN-------IEILSKPILCPACQSG 684 Query: 71 LV 72 Sbjct: 685 FW 686 >UniRef50_B9TJX8 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJX8_RICCO Length = 290 Score = 64.0 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 6/93 (6%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L + ++G F+GC+ Y P CDY R L A+ V+ GQ ++ Sbjct: 2 CPKCGRQLQKQLSRYGSFIGCTGYNATPKCDYKRNLDGEANAASEPVVIGQ-DVDTQKDI 60 Query: 72 VLRQGRFGMFI--GCINYPECEHTELIDKPDET 102 L G +G ++ G + + + + P E Sbjct: 61 YLMNGPYGPYLQVGQPVEGDKKKPKRVSIPKEI 93 >UniRef50_Q64CK3 DNA topoisomerase n=2 Tax=environmental samples RepID=Q64CK3_9ARCH Length = 681 Score = 64.0 bits (154), Expect = 3e-09, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%) Query: 1 MAKSALFTVRNNE---SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIV 56 + S VR ++ SCPKC ++L++ S + G F+GCS YPAC++ P+ S + Sbjct: 575 IGNSLKEAVRADKIVGSCPKCDSDLLLLSSRRGKRFVGCSNYPACEFSLPMPKSGRVVVT 634 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 + + P ++++G GC P C + DK Sbjct: 635 EDKCDE-HPYMFKLKIIKKGARPWDFGC---PYCNFQQWQDKVKSEK 677 Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 8/110 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPD 100 + +S + CP C ++L+L R G F+GC NYP CE + + K Sbjct: 570 KNRSEIGNSLKEAVRADKIVGSCPKCDSDLLLLSSRRGKRFVGCSNYPACEFSLPMPKSG 629 Query: 101 ETAITCPQCRTGHLVQR----RSRYGKTFHSCDRYPECQFAINFKPIAGE 146 +T +C + + + C P C F + E Sbjct: 630 RVVVTEDKCDEHPYMFKLKIIKKGARPWDFGC---PYCNFQQWQDKVKSE 676 Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 13/82 (15%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------IAGECPECH 151 + D+ +CP+C + L+ SR GK F C YP C+F++ +C E Sbjct: 584 RADKIVGSCPKCDS-DLLLLSSRRGKRFVGCSNYPACEFSLPMPKSGRVVVTEDKCDE-- 640 Query: 152 YPLLIE----KKTAQGVKHFCA 169 +P + + KK A+ C Sbjct: 641 HPYMFKLKIIKKGARPWDFGCP 662 >UniRef50_D2RGC8 DNA topoisomerase n=2 Tax=Archaeoglobaceae RepID=D2RGC8_ARCPR Length = 648 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 SCP+CG L+++ + F+GCS YP C + RPL V +VC G ++ Sbjct: 580 SCPECGGVLLVKRA-NKRFIGCSNYPKCKFSRPLPQKGRL----VTTSKVCEKHGVKILR 634 Query: 74 RQGRFGMFIGCINYPEC 90 + + C P C Sbjct: 635 IVEKDRKWEFC---PLC 648 Score = 59.7 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIA 144 E + +CP+C LV+R ++ F C YP+C+F+ + Sbjct: 566 EKDREEEMEKNAIGSCPECGGVLLVKRANKR---FIGCSNYPKCKFSRPLPQKGRLVTTS 622 Query: 145 GECPECHYPLLIEKKTAQGVKHFCA 169 C + +L + + FC Sbjct: 623 KVCEKHGVKILRIVEKDRK-WEFCP 646 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC-RTGHLVQRRSRYG 122 CP CG L++++ FIGC NYP+C+ + + + T C + G + R Sbjct: 581 CPECGGVLLVKRA-NKRFIGCSNYPKCKFSRPLPQKGRLVTTSKVCEKHGVKILRIVEKD 639 Query: 123 KTFHSCDRYPEC 134 + + C P C Sbjct: 640 RKWEFC---PLC 648 >UniRef50_O58356 DNA topoisomerase 1 n=2 Tax=Pyrococcus RepID=TOP1_PYRHO Length = 686 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 9/86 (10%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPE 149 + CP+C +V+ + GK F C +P+C P C Sbjct: 596 DEVKPLVVGKCPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPILQRGEIIPTNKTC-- 653 Query: 150 C-HYPLLIEKKTAQGVKHFCASKQCG 174 C P++I ++ C C Sbjct: 654 CNGAPVVIIREEDGREFEICLDINCK 679 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 7/80 (8%) Query: 14 SCPKCGAELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L+++ K F+GCS +P CD P+ + + + C + Sbjct: 605 KCPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPILQRGE----IIPTNKTCCNGAPVV 660 Query: 72 VLRQGRFGMFIGCINYPECE 91 ++R+ F C++ C+ Sbjct: 661 IIREEDGREFEICLD-INCK 679 Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDE---TAITCP 107 VK L CP CG +L+++ + F+GC N+P+C+ T I + E T TC Sbjct: 595 EDEVKPLVVGKCPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPILQRGEIIPTNKTC- 653 Query: 108 QCRTGHLVQRRSRYGKTFHSC 128 C +V R G+ F C Sbjct: 654 -CNGAPVVIIREEDGREFEIC 673 >UniRef50_A6EQS9 Hypothetical membrane protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6EQS9_9BACT Length = 252 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 23/40 (57%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 CPKC +L+ +SGK+G F GCS YP C Y +K Sbjct: 213 KEKQRICPKCENQLIEKSGKYGKFYGCSNYPKCRYTLKIK 252 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELID 97 K + ++CP C L+ + G++G F GC NYP+C +T I Sbjct: 197 KNHSSQVKQQINERNKKEKQRICPKCENQLIEKSGKYGKFYGCSNYPKCRYTLKIK 252 Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + + E CP+C L+++ +YGK F+ C YP+C++ + K Sbjct: 202 QVKQQINERNKKEKQRICPKCEN-QLIEKSGKYGK-FYGCSNYPKCRYTLKIK 252 >UniRef50_C5S684 DNA topoisomerase type IA zn finger domain protein (Fragment) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S684_CHRVI Length = 402 Score = 63.6 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 + T +CP CG+ + +RSG++G F GCSQYP C R Sbjct: 359 PRVTTRSGTPTCPYCGSSMRLRSGRYGQFWGCSQYPGCKGTRNF 402 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + + CP CG+++ LR GR+G F GC YP C+ T Sbjct: 355 TPTSPRVTTRSGTPTCPYCGSSMRLRSGRYGQFWGCSQYPGCKGTRN 401 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 T TCP C + + R RYG+ F C +YP C+ NF Sbjct: 357 TSPRVTTRSGTPTCPYCGS-SMRLRSGRYGQ-FWGCSQYPGCKGTRNF 402 >UniRef50_B8FJQ0 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJQ0_DESAA Length = 450 Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEK 158 + A+TCP C G + ++++ GK F +C CQF KP CP C L+E Sbjct: 346 EEALAMTCPLCGEGKVKEQQTSMGKIFFACTS-KSCQFISWGKPHHIPCPLCSNSFLVEA 404 Query: 159 KTAQG-VKHFCASKQCGK 175 + +G C C Sbjct: 405 QAIEGHAILKCPRATCSH 422 >UniRef50_B0TT01 UvrD/REP helicase n=4 Tax=Shewanella RepID=B0TT01_SHEHH Length = 1013 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 37/134 (27%) Query: 15 CPKC-GAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP+C +L+ R G+ G F CS CD C C + + Sbjct: 896 CPQCKEGKLIPREGRFGLFYTCSLGQDYCDTKI----------------DACSVCNSAPM 939 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR-SRYGKTFHSCDRY 131 LR E H +K CP+C +G LV R S+ GK+F +C + Sbjct: 940 LRN-------------ETHHFCSSEKCGHRLPVCPECISGKLVVRTNSKSGKSFLACSGH 986 Query: 132 P-----ECQFAINF 140 CQ+ N Sbjct: 987 KRDDKNSCQYTCNL 1000 Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 14/74 (18%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPE-CQFAINFKPIAGECPEC-HYPLLIEKKTAQG 163 CPQC+ G L+ R R+G F++C + C I+ C C P+L Sbjct: 896 CPQCKEGKLIPREGRFG-LFYTCSLGQDYCDTKID------ACSVCNSAPML-----RNE 943 Query: 164 VKHFCASKQCGKPV 177 HFC+S++CG + Sbjct: 944 THHFCSSEKCGHRL 957 >UniRef50_Q1V889 DNA topoisomerase I n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1V889_VIBAL Length = 486 Score = 62.8 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 24/107 (22%) Query: 4 SALFTVRNN-ESCPKCGAELVIRSGKHG--PFLGCSQY----PACDYVRPLKSSADGHIV 56 + ++R + + CPKCG + + K F GC+ + C Y +K Sbjct: 391 AKTVSIREDAKVCPKCGRLMRVTPNKKDGIHFYGCTGFFETTNKCTYSENIKVKE----- 445 Query: 57 KVLEGQVCPACGANLVLRQGRF--GMFIGCINY---PECEHTELIDK 98 CP+CG ++V ++ R F+ C+ Y P+C +TE +++ Sbjct: 446 -------CPSCGNDVVKKKNRKEGTYFLACLGYSKTPQCHYTENLEE 485 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 16/99 (16%) Query: 53 GHIVKVLEGQVCPACGANLVLR-QGRFGM-FIGCINYPE----CEHTELIDKPDETAITC 106 + + +VCP CG + + + G+ F GC + E C ++E I + C Sbjct: 392 KTVSIREDAKVCPKCGRLMRVTPNKKDGIHFYGCTGFFETTNKCTYSENIKVKE-----C 446 Query: 107 PQCRTGHLVQRRSRY-GKTFHSCDRY---PECQFAINFK 141 P C +V++++R G F +C Y P+C + N + Sbjct: 447 PSCGN-DVVKKKNRKEGTYFLACLGYSKTPQCHYTENLE 484 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%) Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRY----PECQFAINFKPIAGECPECHYPLLI 156 E A CP+C V + G F+ C + +C ++ N K ECP C ++ Sbjct: 398 EDAKVCPKCGRLMRVTPNKKDGIHFYGCTGFFETTNKCTYSENIK--VKECPSCGNDVVK 455 Query: 157 EKKTAQGVKHF-CA----SKQCGKPVSAE 180 +K +G C + QC + E Sbjct: 456 KKNRKEGTYFLACLGYSKTPQCHYTENLE 484 >UniRef50_C5U8C5 DNA topoisomerase (Fragment) n=1 Tax=Methanocaldococcus infernus ME RepID=C5U8C5_9EURY Length = 344 Score = 62.4 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 27/35 (77%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 +CP+CG+ LV++ GK+G F+GC+ +P C + + L+ Sbjct: 310 TCPRCGSPLVVKEGKYGKFIGCTNFPKCKFTKSLE 344 Score = 58.6 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 28/35 (80%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELID 97 CP CG+ LV+++G++G FIGC N+P+C+ T+ ++ Sbjct: 310 TCPRCGSPLVVKEGKYGKFIGCTNFPKCKFTKSLE 344 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 E TCP+C + LV + +YGK F C +P+C+F + + Sbjct: 304 NKEVVGTCPRCGSP-LVVKEGKYGK-FIGCTNFPKCKFTKSLE 344 >UniRef50_C6V581 DNA topoisomerase n=2 Tax=Neorickettsia RepID=C6V581_NEORI Length = 827 Score = 62.0 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 1 MAKSALFT--VRNNESCPKCGAE-LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK 57 +AK L + V+ + CPKC + + ++G FLGC+ YP C ++ S+ D Sbjct: 585 LAKQKLVSAEVKVGDKCPKCEKGYMHLSVSRYGVFLGCTNYPVCRFIVNSYSTDDDTEYP 644 Query: 58 VLEGQVCPACGANLVLRQGRFGMFI 82 Q ++ L +G +G+++ Sbjct: 645 KQIAQ-------DISLHKGPYGIYL 662 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 +L+ + CP+C G++ SRYG F C YP C+F +N Sbjct: 587 KQKLVSAEVKVGDKCPKCEKGYMHLSVSRYG-VFLGCTNYPVCRFIVNSYSTDD 639 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 49 SSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 + +V G CP C + L R+G+F+GC NYP C D+ Sbjct: 586 AKQKLVSAEVKVGDKCPKCEKGYMHLSVSRYGVFLGCTNYPVCRFIVNSYSTDD 639 >UniRef50_Q1AUL7 DNA topoisomerase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUL7_RUBXD Length = 702 Score = 62.0 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECH 151 + DET CP C +V+R R K F C+ YPEC+ P+ C C Sbjct: 587 RGDETLGPCPNCGRNLVVRRNRRNRKRFAGCEGYPECRTTFPLPQKGDIIPLGTACEACG 646 Query: 152 YPLLIEKKTAQGVKHFCASKQCGK 175 P I+ + C + C K Sbjct: 647 LPE-IKVLGGRRPWVTCINMDCPK 669 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 11/116 (9%) Query: 9 VRNNES---CPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 +R +E+ CP CG LV+R + F GC YP C PL D + G Sbjct: 586 IRGDETLGPCPNCGRNLVVRRNRRNRKRFAGCEGYPECRTTFPLPQKGD----IIPLGTA 641 Query: 64 CPACGANLVLRQGRFGMFIGCINYPEC-EHTELIDKPDETAITCPQCRTGHLVQRR 118 C ACG + G ++ CIN +C + E +ET + G ++R Sbjct: 642 CEACGLPEIKVLGGRRPWVTCINM-DCPKKQEQRRSREETQAGGEEPSEGQRDRKR 696 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%) Query: 64 CPACGANLVLRQGRFGM--FIGCINYPECEHTELIDKPDET---AITCPQCRTGHLVQRR 118 CP CG NLV+R+ R F GC YPEC T + + + C C + Sbjct: 595 CPNCGRNLVVRRNRRNRKRFAGCEGYPECRTTFPLPQKGDIIPLGTACEACGLPEIKVLG 654 Query: 119 SRYGKTFHSCDRYPECQ 135 R + +C +C Sbjct: 655 GRR--PWVTCINM-DCP 668 >UniRef50_UPI0000E88005 helicase IV n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E88005 Length = 955 Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 45/132 (34%), Gaps = 34/132 (25%) Query: 13 ESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CP C + L ++ K G F GC + C Y C C Sbjct: 853 RVCPLCKTSPLTEKTSKDGRNFFGCQNWDLCLYTS----------------APCQLCNIG 896 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 + + + C N C+H A +CP+C G+L Q+ +G F +C Sbjct: 897 YLEKH---DTYFSCDN-KHCKHQ---------AESCPKCGDGYLHQKPGEFG-LFLACSN 942 Query: 131 Y--PECQFAINF 140 Y C F N Sbjct: 943 YYTNNCDFTKNL 954 Score = 55.9 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 10/74 (13%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVK 165 CP C+T L ++ S+ G+ F C + C + C C+ L Sbjct: 855 CPLCKTSPLTEKTSKDGRNFFGCQNWDLCLYTSA------PCQLCNIGYL----EKHDTY 904 Query: 166 HFCASKQCGKPVSA 179 C +K C + Sbjct: 905 FSCDNKHCKHQAES 918 >UniRef50_Q2B8U1 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8U1_9BACI Length = 1166 Score = 61.3 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 + CPKCG LV R ++G F GC +P C Y+ K + Sbjct: 1127 KVCPKCGKPLVERKSEYGVFYGCKGFPKCRYIESKKKTIH 1166 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 45 RPLKSSADGHIVKVLEG---QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP 99 + V L G +VCP CG LV R+ +G+F GC +P+C + E K Sbjct: 1107 MEFTTQDKMREVATLSGNILKVCPKCGKPLVERKSEYGVFYGCKGFPKCRYIESKKKT 1164 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI 143 CP+C LV+R+S YG F+ C +P+C++ + K Sbjct: 1129 CPKCGKP-LVERKSEYG-VFYGCKGFPKCRYIESKKKT 1164 >UniRef50_D1AS14 DNA topoisomerase type IA central domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AS14_SEBTE Length = 764 Score = 61.3 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 11/124 (8%) Query: 2 AKSALFTVRNNESCPKCGAELV--IRSGKHGPFLGCSQYPACDYVRPLKSSADG---HIV 56 K +++ CPKC + I++ K+ F CS+ C Sbjct: 606 NKDIKIRHKDDVICPKCNDGFLKNIKTSKY-NFWACSE-EKCGSTFNDNKGKPDFTEKRP 663 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCI----NYPECEHTELIDKPDETAITCPQCRTG 112 CP G L +G++G F C NY + + E + +C G Sbjct: 664 AEKSEIPCPKDGGILYKIKGKYGDFWKCKTCQQNYKDSNGKPDLSPKKEMKKSAQKCDCG 723 Query: 113 HLVQ 116 + Sbjct: 724 EFLT 727 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 31/163 (19%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLV--LRQGRFGMFIGCINYPECEHTELIDKP 99 V + ++ + +CP C + ++ ++ F C +C T +K Sbjct: 597 KSVIQAMETNKDIKIRHKDDVICPKCNDGFLKNIKTSKYN-FWACS-EEKCGSTFNDNKG 654 Query: 100 ----------DETAITCPQCRTGHLVQRRSRYGKTFHSC----DRYPECQFAINFKPIAG 145 +++ I CP+ G L + + +YG F C Y + + P Sbjct: 655 KPDFTEKRPAEKSEIPCPK-DGGILYKIKGKYG-DFWKCKTCQQNYKDSNGKPDLSPKKE 712 Query: 146 ------ECPECHYPL--LIEKKTAQGVKHFCASKQCGKPVSAE 180 +C +C L + KK + C ++C + Sbjct: 713 MKKSAQKC-DCGEFLTEIPTKKDPNKIMLCC--EKCNSKYFEQ 752 >UniRef50_A3DB61 DNA topoisomerase n=1 Tax=Shewanella baltica OS155 RepID=A3DB61_SHEB5 Length = 707 Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD-ETAITCPQCRTGHLVQRRSR-Y 121 CP C ++ G+ G F C + +C ++ C C+ G LV+++++ Sbjct: 614 CPVCQKSMKQLSGKNGKFWVCEDKEQCGLLLNDERGKLPKTTPC-TCKKGVLVRKKAKTK 672 Query: 122 GKTFHSCDRYPE 133 GK + C Y Sbjct: 673 GKFWWGCSAYQS 684 Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 6/74 (8%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C + SGK+G F C C + + C G + + Sbjct: 614 CPVCQKSMKQLSGKNGKFWVCEDKEQCGLLLNDERGKLPKTTPC----TCKK-GVLVRKK 668 Query: 75 QGRFGMF-IGCINY 87 G F GC Y Sbjct: 669 AKTKGKFWWGCSAY 682 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 11/102 (10%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK--- 141 + + ++T + K + CP C+ +++ S F C+ +C +N + Sbjct: 593 SMFKQGQYTLKLPKVLAVTLPCPVCQKS--MKQLSGKNGKFWVCEDKEQCGLLLNDERGK 650 Query: 142 -PIAGECPECHYPLLIEK--KTAQGVKHFCA--SKQCGKPVS 178 P C C +L+ K KT C+ C + + Sbjct: 651 LPKTTPC-TCKKGVLVRKKAKTKGKFWWGCSAYQSGCQRRLF 691 >UniRef50_A1VWJ4 UvrD/REP helicase n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWJ4_POLNA Length = 914 Score = 61.3 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 8 TVRNNESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSSA 51 T +NE C CG V+ ++GK+G FLGCS YP C + R ++ + Sbjct: 862 TESSNELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIEQNE 906 Score = 55.9 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 59 LEGQVCPACGANLVL-RQGRFGMFIGCINYPECEHTELIDKPD 100 ++C CG V+ + G++G F+GC NYP C HT I++ + Sbjct: 864 SSNELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIEQNE 906 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + D + + C C G +V + +YG F C YP C+ N + Sbjct: 855 TVRMADGTESSNELCSVCGDGFVVPKNGKYG-AFLGCSNYPRCRHTRNIE 903 >UniRef50_A7I6L6 DNA topoisomerase n=5 Tax=Methanomicrobiales RepID=A7I6L6_METB6 Length = 942 Score = 60.9 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 11/110 (10%) Query: 14 SCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP CG L I+ + F+GCS+YP C + V +C + V Sbjct: 590 RCPACGGTLAIKHMRGSTQFIGCSRYPEC--TFNIGLPVTQWGWAVRTDDICDKHHLHFV 647 Query: 73 --LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 +R+G IGC P C H + P L + RS+ Sbjct: 648 RLVRKGARPWDIGC---PLCHHISSNAESLTEI---PSMDEALLEKARSK 691 Score = 49.3 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 9/119 (7%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGR-FGMFIGCINYPECEHT--ELIDKPDETAIT 105 + + L CPACG L ++ R FIGC YPEC + + T Sbjct: 576 NDIRDRTAEELNLGRCPACGGTLAIKHMRGSTQFIGCSRYPECTFNIGLPVTQWGWAVRT 635 Query: 106 CPQCRTGHL-VQRRSRYGKTFH--SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 C HL R R G C P C + E P LL + ++ Sbjct: 636 DDICDKHHLHFVRLVRKGARPWDIGC---PLCHHISSNAESLTEIPSMDEALLEKARSK 691 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 12/84 (14%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI--------NFKPIAGECPECHYPLL 155 CP C G L + R F C RYPEC F I C + H + Sbjct: 589 GRCPACG-GTLAIKHMRGSTQFIGCSRYPECTFNIGLPVTQWGWAVRTDDICDKHHLHFV 647 Query: 156 IEKKTAQGVKHF-CASKQCGKPVS 178 + C C S Sbjct: 648 RLVRKGARPWDIGCP--LCHHISS 669 >UniRef50_A5G3C3 DNA topoisomerase, type IA, zn finger domain protein n=11 Tax=Bacteria RepID=A5G3C3_GEOUR Length = 260 Score = 60.9 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKS 49 S + CP CG +V+R+ + G F GCS YP C P++ Sbjct: 210 SDRTDRSEKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTTLPVQP 260 Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELIDK 98 + E ++CPACG +VLR R G F GC YPEC+ T + Sbjct: 202 HKQNQTDPSDRTDRSEKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTTLPVQP 260 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 93 TELIDKPDETAIT-CPQCRTGHLVQ---RRSRYGKTFHSCDRYPECQFAINFKP 142 T+ D+ D + CP C +++ + S G F C YPEC+ + +P Sbjct: 207 TDPSDRTDRSEKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTTLPVQP 260 >UniRef50_A8U7S1 DNA topoisomerase n=2 Tax=Lactobacillales RepID=A8U7S1_9LACT Length = 701 Score = 60.9 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 16/115 (13%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 + CP CG L RSG+ G L CS C Y R + C C Sbjct: 582 HALTTKICPDCGELLKERSGRDGKMLICSS-TTCSYKRRKDPK--------VSNHRCAQC 632 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQRRSRY 121 + + +G+ G NY +C++ + +K + + P + T L+++ ++ Sbjct: 633 HRKMEIHEGKNG------NYFKCKYCNITEKIEGKSSKKPSKHETSKLMKKINKQ 681 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 10/100 (10%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 +K+S + + L ++CP CG L R GR G + C + C + D P + C Sbjct: 572 IKNSTETYKDHALTTKICPDCGELLKERSGRDGKMLICSST-TCSYKRRKD-PKVSNHRC 629 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 QC + + G F +C++ + I G+ Sbjct: 630 AQCHRKMEIH-EGKNGNYF-------KCKYCNITEKIEGK 661 >UniRef50_A0RYH5 DNA topoisomerase I n=1 Tax=Cenarchaeum symbiosum RepID=A0RYH5_CENSY Length = 208 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%) Query: 97 DKPDETAITCPQCRTGHLVQRRSR-YGKTFHSCDRYPE-CQFAIN------FKPIAGECP 148 +P + CP+C TG LV RSR K F C Y C + + + CP Sbjct: 119 SEPTNGLVRCPECGTGQLVVVRSRTTRKRFLGCSNYYNGCAASAPLLQRAKLRVLKRACP 178 Query: 149 ECHYPLLIEKKTAQGVK-HFCASKQC 173 C +P+++ + + + CA+++C Sbjct: 179 GCGWPIVMFRYSRKQSWTKQCANREC 204 Score = 39.7 bits (91), Expect = 0.041, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 9/84 (10%) Query: 14 SCPKCG-AELVIRSGK--HGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGA 69 CP+CG +LV+ + FLGCS Y C PL A ++K + CP CG Sbjct: 127 RCPECGTGQLVVVRSRTTRKRFLGCSNYYNGCAASAPLLQRAKLRVLK----RACPGCGW 182 Query: 70 NLVL-RQGRFGMFIGCINYPECEH 92 +V+ R R + EC+ Sbjct: 183 PIVMFRYSRKQSWTKQCANRECDT 206 Score = 39.7 bits (91), Expect = 0.047, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 8/80 (10%) Query: 64 CPACG-ANLVLRQGR--FGMFIGCINYPE-CEHTELIDKPDETAI---TCPQCRTGHLVQ 116 CP CG LV+ + R F+GC NY C + + + + + CP C ++ Sbjct: 128 CPECGTGQLVVVRSRTTRKRFLGCSNYYNGCAASAPLLQRAKLRVLKRACPGCGWPIVMF 187 Query: 117 RRSRYGKTFHSCDRYPECQF 136 R SR C EC Sbjct: 188 RYSRKQSWTKQCANR-ECDT 206 >UniRef50_A7JLN3 Predicted protein n=3 Tax=Francisella RepID=A7JLN3_FRANO Length = 257 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRP 46 KS ++ E CPKC LV R+ K G FLGCS +P C Y + Sbjct: 209 KSLKEKYKSEEICPKCSGLLVERTIKKGKKQGHTFLGCSNFPKCRYTKS 257 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGK----TFHSCDRYPECQFA 137 +H + + + ++ CP+C +G LV+R + GK TF C +P+C++ Sbjct: 206 KHVKSLKEKYKSEEICPKC-SGLLVERTIKKGKKQGHTFLGCSNFPKCRYT 255 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 + + K ++CP C LV R + G F+GC N+P+C +T+ Sbjct: 199 NNIVNNYKHVKSLKEKYKSEEICPKCSGLLVERTIKKGKKQGHTFLGCSNFPKCRYTKS 257 >UniRef50_A5FDL0 NERD domain protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FDL0_FLAJ1 Length = 259 Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CPKCG +++ R GK G FLGC YP C+Y + Sbjct: 225 KCPKCGNKMIQRQGKFGIFLGCKSYPKCNYTQQE 258 Score = 56.3 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 34/53 (64%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 +++ +K + K ++ CP CG ++ RQG+FG+F+GC +YP+C +T+ Sbjct: 204 EHINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKFGIFLGCKSYPKCNYTQ 256 Score = 45.5 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 + +DK I CP+C ++QR+ ++G F C YP+C + Sbjct: 211 QRINFLDKKTIQEIKCPKCGN-KMIQRQGKFG-IFLGCKSYPKCNYT 255 >UniRef50_C5B550 DNA topoisomerase n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B550_METEA Length = 888 Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 57/212 (26%), Gaps = 48/212 (22%) Query: 14 SCPKC-GAELVIR------SGKHGPFLGCSQY-----PACDYVRPLKSSADGHIVKVLEG 61 CP C LV + K FL C + C Y P EG Sbjct: 640 ECPHCRAGHLVTQLWPFDDEYKGRRFLRCDNWVKDRADNCRYKTP-PEGYKEREKLEGEG 698 Query: 62 QVCPACG-----ANLVLRQG--RFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHL 114 CPACG +V ++G R F+ C + + CP C G L Sbjct: 699 NPCPACGKGVLKGGVVRKEGPNRGRPFLMCSEVDREKPDSCQHFEWKDETPCPSCGKGVL 758 Query: 115 ---VQRRSR--YGKTFHSCD-----RYPECQFAINF----------KPIAGECPECHYPL 154 V R+ G+ F C CQ K C C Sbjct: 759 KRGVVRKEGPNKGRPFAMCSAVDRTNPDGCQHFSWLDEKAAKGPKIKGEGELCTVCGKGT 818 Query: 155 LIEKKTA--QGVKHFCAS------KQCGKPVS 178 ++ + C++ C V Sbjct: 819 MMRRTGRTSGKPFLSCSNWKQGASDSCDNRVF 850 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 15/92 (16%) Query: 10 RNNESCPKCGAELVIR-------SGKHGPFLGCS-----QYPACDYVRPLKSSADGHIVK 57 ++ CP CG ++ R K PF CS C + L A Sbjct: 745 KDETPCPSCGKGVLKRGVVRKEGPNKGRPFAMCSAVDRTNPDGCQHFSWLDEKAAKGPKI 804 Query: 58 VLEGQVCPACG-ANLVLRQGRFG--MFIGCIN 86 EG++C CG ++ R GR F+ C N Sbjct: 805 KGEGELCTVCGKGTMMRRTGRTSGKPFLSCSN 836 Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 19/80 (23%) Query: 95 LIDKPDETAITCPQCRTGHLVQR-----RSRYGKTFHSCDRY-----PECQFAINFKPIA 144 ++ + CP CR GHLV + G+ F CD + C++ + Sbjct: 630 SVEPLEGHGTECPHCRAGHLVTQLWPFDDEYKGRRFLRCDNWVKDRADNCRYKTPPEGYK 689 Query: 145 G---------ECPECHYPLL 155 CP C +L Sbjct: 690 EREKLEGEGNPCPACGKGVL 709 >UniRef50_Q9X3X7 DNA topoisomerase 1 n=7 Tax=cellular organisms RepID=TOP1_ZYMMO Length = 1217 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 + CP C L ++ G+ G F+ CS YP C Y R D Sbjct: 593 DPRECPSCHTGRLALKGGRFGAFIACSNYPECKYTRGFGQGED 635 Score = 55.5 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 ++ P G E CP+C L L+ GRFG FI C NYPEC++T + + Sbjct: 578 KFLEPWLFPDKGDGHDPRE---CPSCHTGRLALKGGRFGAFIACSNYPECKYTRGFGQGE 634 Query: 101 E 101 + Sbjct: 635 D 635 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 CP C TG L + R+G F +C YPEC++ Sbjct: 586 PDKGDGHDPRECPSCHTGRLALKGGRFG-AFIACSNYPECKYT 627 >UniRef50_C7NA27 DNA topoisomerase n=20 Tax=Fusobacteriaceae RepID=C7NA27_LEPBD Length = 800 Score = 59.3 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 26/110 (23%) Query: 19 GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK--------------------- 57 G V++ G+ G +L Y + L + K Sbjct: 639 GNRYVLKVGRFGEYLESENYEKDEKRMSLPAELKQKYKKGAVIELDGVLQINDEMKRLQE 698 Query: 58 -----VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 + E VC CG ++ GRFG F+ C YPEC+ + I T Sbjct: 699 IDRKIIEEAGVCEFCGKPYEIKTGRFGKFLACTGYPECKTIKNIKTGKVT 748 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA 51 C CG I++G+ G FL C+ YP C ++ +K+ Sbjct: 709 VCEFCGKPYEIKTGRFGKFLACTGYPECKTIKNIKTGK 746 Score = 48.2 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 54/174 (31%), Gaps = 54/174 (31%) Query: 19 GAELVIRSGKHGPFLGCSQYPACD------------------YVRPLKSSADGHIVKVLE 60 G +++++G +G +L +++ + +L Sbjct: 573 GKPMILKTGLYGKYLISETNEKEKVSLKGIAVSPEELKKGEIFIKTEVEKLQNNKKGILT 632 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPE------------------------------- 89 G VL+ GRFG ++ NY + Sbjct: 633 DYFDEN-GNRYVLKVGRFGEYLESENYEKDEKRMSLPAELKQKYKKGAVIELDGVLQIND 691 Query: 90 --CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 E+ K E A C C + + + R+GK F +C YPEC+ N K Sbjct: 692 EMKRLQEIDRKIIEEAGVCEFCGKPYEI-KTGRFGK-FLACTGYPECKTIKNIK 743 >UniRef50_A3EW25 DNA topoisomerase n=3 Tax=Leptospirillum RepID=A3EW25_9BACT Length = 684 Score = 59.0 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 35/78 (44%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 K++ +V +EG++C CG L +G+FG F+GC YP C H E + T Sbjct: 601 TKTALALRVVIPVEGKICSECGGVLRRLEGKFGPFLGCSGYPACRHLEKLPGAVSTNKRS 660 Query: 107 PQCRTGHLVQRRSRYGKT 124 P R GK+ Sbjct: 661 PSRGKNTKGTRNGNSGKS 678 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 + C +CG L GK GPFLGCS YPAC ++ L + + G+ Sbjct: 614 EGKICSECGGVLRRLEGKFGPFLGCSGYPACRHLEKLPGAVSTNKRSPSRGKNTKGT--- 670 Query: 71 LVLRQGRFGM 80 R G G Sbjct: 671 ---RNGNSGK 677 >UniRef50_UPI0001BC8A6C UvrD-like helicase IV n=1 Tax=Pseudomonas syringae pv. tabaci ATCC 11528 RepID=UPI0001BC8A6C Length = 289 Score = 59.0 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 12/84 (14%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRY-GKTFHSCDRYPECQFAINFKPIAGECPE 149 E ++ + A CP C G+LV RR++ G +F +C +P C C + Sbjct: 160 EFAASPEQKNAIATNCPVCTQGNLVNRRNKTTGSSFIACSNWPRCTHT------ESGCRQ 213 Query: 150 CHYPLLIEKKTAQGVKHFCASKQC 173 C P++ G C + C Sbjct: 214 CDAPMV-----RSGRYRLCTAPAC 232 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 15/77 (19%) Query: 14 SCPKC-GAELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ-------- 62 +CP C LV R K F+ CS +P C + D +V+ + Sbjct: 174 NCPVCTQGNLVNRRNKTTGSSFIACSNWPRCTHTESGCRQCDAPMVRSGRYRLCTAPACS 233 Query: 63 ----VCPACGANLVLRQ 75 VCP+ G +V R+ Sbjct: 234 GWAAVCPSSGGTMVYRE 250 Score = 38.5 bits (88), Expect = 0.098, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 25/106 (23%) Query: 64 CPAC--GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP C G + R G FI C N+P C HTE C QC + R Sbjct: 175 CPVCTQGNLVNRRNKTTGSSFIACSNWPRCTHTES---------GCRQCDAPMV-----R 220 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 G+ + P C + A CP ++ +++ G H Sbjct: 221 SGR--YRLCTAPAC--SGW----AAVCPSSGGTMVYRERSMVGAAH 258 >UniRef50_C9KMQ0 DNA topoisomerase n=5 Tax=Bacteria RepID=C9KMQ0_9FIRM Length = 821 Score = 59.0 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 90 CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 C + + CP+C G L +R+ + G F C YP+C+ N K Sbjct: 614 CAKATDVHMEVKGENVCPRCHQGVLTKRKGKNG-VFWGCSNYPKCRMTCNDK 664 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 27/195 (13%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYV------RPLKSSADGHIVKVLEG 61 V+ CP+C L R GK+G F GCS YP C +P A + + Sbjct: 624 VKGENVCPRCHQGVLTKRKGKNGVFWGCSNYPKCRMTCNDKDGKPDLEDAKARLARRPCA 683 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC-----PQCRTGHLVQ 116 A A+ + Q Y E + I + + Sbjct: 684 AAPAAVSASALAWQAHPSSAQAAGGYSSAESADDIAALNALFSPADYAARMEADAKSYAA 743 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPI----------AGECPECHYPLLIEKKTAQGVKH 166 ++ + ++ S P+ + P+ CP C L GV Sbjct: 744 QQKKASSSWQSWADKPK----YSASPMEHMAKDVASSDYLCPRCREGHLRSIYGRNGVFW 799 Query: 167 FCAS-KQCGKPVSAE 180 C++ +C + Sbjct: 800 GCSNYPRCTATFDDD 814 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 + R L + A ++V VCP C L R+G+ G+F GC NYP+C T Sbjct: 609 FTRKLCAKATDVHMEVKGENVCPRCHQGVLTKRKGKNGVFWGCSNYPKCRMTCNDKDGKP 668 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 49 SSADGHIVKVLEGQVCPAC-GANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 +CP C +L GR G+F GC NYP C T D Sbjct: 765 PMEHMAKDVASSDYLCPRCREGHLRSIYGRNGVFWGCSNYPRCTATFDDDHGKP 818 >UniRef50_A3M2F6 TraB protein n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M2F6_ACIBT Length = 753 Score = 58.6 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 14/177 (7%) Query: 11 NNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + C KC +LV + +G + C+ C ++ + + C C + Sbjct: 572 PKQYCSKCSEQLVNMTSANGKPYFKCTNL-KCGHMMMNQDGIAIDRESLTSEFKCIVCES 630 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 L+ R G+ G F GC + + +K + P + R K Sbjct: 631 GLISRSGQNGEFFGCSGFFKKR-----NKCTASYQKKPDGTPDYQAFLAKRELKESKQEQ 685 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGV------KHFCASKQCGKPVSAE 180 K CPEC LL ++ C+S C E Sbjct: 686 GEKPVPKNTEKKEKEFNCPECKA-LLQQRTGKSKTTNKKWEIWSCSSPNCKNEYWGE 741 Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 33/146 (22%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQY----PACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 C C + L+ RSG++G F GCS + C K L + Sbjct: 624 KCIVCESGLISRSGQNGEFFGCSGFFKKRNKCTASYQKKPDGTPDYQAFLAKRELKESKQ 683 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF---- 125 + P ++TE +K CP+C+ L+Q+R+ KT Sbjct: 684 EQGEK-------------PVPKNTEKKEKE----FNCPECKA--LLQQRTGKSKTTNKKW 724 Query: 126 --HSCDRYPECQFAIN---FKPIAGE 146 SC P C+ KPI + Sbjct: 725 EIWSCSS-PNCKNEYWGERNKPIFDK 749 >UniRef50_UPI00017C3C60 PREDICTED: hypothetical protein n=1 Tax=Bos taurus RepID=UPI00017C3C60 Length = 819 Score = 58.6 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Query: 3 KSALFTVRNNESCPKCGAELVIR--SGKHGPFLGCSQYPACDYVRPLKSS 50 K + CPKCG + + +G +G FLGCS+YP C Y + LK Sbjct: 770 KQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLKRR 819 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 21/48 (43%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + ++ CP+C G L + + F C RYP C++ N K Sbjct: 770 KQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLK 817 Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLR--QGRFGMFIGCINYPECEHTELIDK 98 +++ + + +CP CG + + G +G F+GC YP C++T+ + + Sbjct: 760 EFIHIPQDEYKQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLKR 818 >UniRef50_B4EXZ8 DNA topoisomerase n=4 Tax=Enterobacteriaceae RepID=B4EXZ8_PROMH Length = 684 Score = 58.6 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 + SCP C ++V+R G F C +YP C PL Sbjct: 614 PLALDLPPMPSCPSCHGKMVLRESSKGRFWSCQRYPDCKGSVPLPEK 660 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CP C G +V R S G+ F SC RYP+C+ ++ Sbjct: 625 CPSCH-GKMVLRESSKGR-FWSCQRYPDCKGSVPLP 658 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 CP+C +VLR+ G F C YP+C+ + + + + Sbjct: 623 PSCPSCHGKMVLRESSKGRFWSCQRYPDCKGSVPLPEKMQGVTRGMN 669 >UniRef50_D1CHV6 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CHV6_THET1 Length = 206 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 ++ + + R C +CG + +RS G F GC+ YP C + P Sbjct: 160 ISAAQVERPRAEHRCERCGGLMELRSSSRGQFWGCTNYPRCRHTLP 205 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 18/42 (42%) Query: 54 HIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + + C CG + LR G F GC NYP C HT Sbjct: 164 QVERPRAEHRCERCGGLMELRSSSRGQFWGCTNYPRCRHTLP 205 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 C +C L++ RS F C YP C+ + Sbjct: 171 EHRCERCGG--LMELRSSSRGQFWGCTNYPRCRHTLP 205 >UniRef50_D0GKB0 DNA topoisomerase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GKB0_9FUSO Length = 851 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%) Query: 52 DGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 + + E VC CG ++ GRFG F+ C YPEC++ + I Sbjct: 711 NEDKKIIEEAGVCEKCGRPFEIKMGRFGKFLACTGYPECKNIKAI 755 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 19/35 (54%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 C KCG I+ G+ G FL C+ YP C ++ + Sbjct: 722 VCEKCGRPFEIKMGRFGKFLACTGYPECKNIKAIP 756 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 25/41 (60%) Query: 55 IVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 K + ++CP CG + R GRFG F GCI YP+C HTE Sbjct: 187 AKKQSKEKICPECGLPMKKRNGRFGEFWGCIGYPDCRHTEN 227 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Query: 1 MAKSALFTVRNNES-CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 + K ++ E CP+CG + R+G+ G F GC YP C + Sbjct: 181 LEKMPAAKKQSKEKICPECGLPMKKRNGRFGEFWGCIGYPDCRHTENT 228 Score = 43.5 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 K CP+C G +++R+ F C YP+C+ N Sbjct: 184 MPAAKKQSKEKICPEC--GLPMKKRNGRFGEFWGCIGYPDCRHTEN 227 >UniRef50_B5EPF0 DNA topoisomerase type IA zn finger domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPF0_ACIF5 Length = 739 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 5/46 (10%) Query: 7 FTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPL 47 T + +CP+CG+ +V R+ + G PF GCS+YP+C RP+ Sbjct: 694 PTQPHAVTCPQCGSRMVRRTARRGSRAGRPFWGCSRYPSCTGTRPI 739 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Query: 96 IDKPDETAITCPQCRTGHL---VQRRSRYGKTFHSCDRYPECQFAIN 139 A+TCPQC + + +R SR G+ F C RYP C Sbjct: 692 PSPTQPHAVTCPQCGSRMVRRTARRGSRAGRPFWGCSRYPSCTGTRP 738 Score = 49.7 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%) Query: 63 VCPACGANLVLRQGRFG-----MFIGCINYPECEHTELI 96 CP CG+ +V R R G F GC YP C T I Sbjct: 701 TCPQCGSRMVRRTARRGSRAGRPFWGCSRYPSCTGTRPI 739 >UniRef50_B2UHD2 DNA topoisomerase type IA zn finger domain protein n=5 Tax=Burkholderiaceae RepID=B2UHD2_RALPJ Length = 323 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 +AK R SCP CG +LV R+GK G F GCS +P C +K Sbjct: 272 LAKVFEGDSRTP-SCPACGVKLVARNGKSGAFWGCSNFPKCWNRLEMK 318 Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 25/97 (25%) Query: 19 GAELVIRSGKHGPFLGCSQY---PACDYVRPL------------------KSSADGHIVK 57 G ++ K G F S Y P +Y + + K Sbjct: 215 GGSMLAHKVKRGVFWSLSGYVGNPVQEYSELAGIQLLDGPAVLERIRALAEDKQAALLAK 274 Query: 58 VLEG----QVCPACGANLVLRQGRFGMFIGCINYPEC 90 V EG CPACG LV R G+ G F GC N+P+C Sbjct: 275 VFEGDSRTPSCPACGVKLVARNGKSGAFWGCSNFPKC 311 >UniRef50_C6CZS8 DNA topoisomerase n=5 Tax=cellular organisms RepID=C6CZS8_PAESJ Length = 719 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 K + CP+CG L+ GK G L CS C Y L + Sbjct: 594 KEYKPHNLTHSRCPECGKLLMEVKGKRGKSLVCSDR-ECSY--------RRQAEPALSNK 644 Query: 63 VCPACGANLVLRQGRFGMFIGC 84 CP C + + G+ G + C Sbjct: 645 RCPQCHKKMEIHNGKAGKYAQC 666 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP--IAGECPE 149 T+ + T CP+C L++ + + GK+ C EC + +P CP+ Sbjct: 592 ETKEYKPHNLTHSRCPECGK-LLMEVKGKRGKSLV-CSDR-ECSYRRQAEPALSNKRCPQ 648 Query: 150 CHYPLLIEKKTAQGVKHFC 168 CH + I G C Sbjct: 649 CHKKMEIH-NGKAGKYAQC 666 Score = 45.5 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 26 SGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCI 85 G F+ + A +V +K+ + L CP CG L+ +G+ G + C Sbjct: 568 QGDAKRFMAGIREQANKWVTAVKNETKEYKPHNLTHSRCPECGKLLMEVKGKRGKSLVCS 627 Query: 86 NYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ 135 + EC + + P + CPQC + + GK Y +C+ Sbjct: 628 DR-ECSYRRQAE-PALSNKRCPQCHKKMEIH-NGKAGK-------YAQCR 667 Score = 41.2 bits (95), Expect = 0.016, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Query: 140 FKP---IAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 +KP CPEC LL+E K +G C+ ++C AE Sbjct: 596 YKPHNLTHSRCPECGK-LLMEVKGKRGKSLVCSDRECSYRRQAE 638 >UniRef50_C1MSJ2 DNA topoisomerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MSJ2_9CHLO Length = 1243 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 12/87 (13%) Query: 8 TVRNNESCPKC-GAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQ- 62 T+R + CP C L ++ K+G F+GCS Y C Y RP+ ++ + Sbjct: 804 TLRASRRCPACVDGRLGLKLSKNGGFIGCSNYNTDTKCAYARPISTTNGDDAESMRTDPW 863 Query: 63 -------VCPACGANLVLRQGRFGMFI 82 V P + +R+G +G ++ Sbjct: 864 LSDGEIGVDPETSRTVSVRRGPYGPYV 890 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 + + G K E ++CP CG L R GRFG F GC +P+C +T+ + Sbjct: 177 MAKESGGTSAKQTEEKICPRCGLALKKRNGRFGGFWGCTGFPDCRYTKNV 226 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 22/37 (59%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 + CP+CG L R+G+ G F GC+ +P C Y + + Sbjct: 190 EEKICPRCGLALKKRNGRFGGFWGCTGFPDCRYTKNV 226 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + + CP+C G +++R+ F C +P+C++ N Sbjct: 179 KESGGTSAKQTEEKICPRC--GLALKKRNGRFGGFWGCTGFPDCRYTKN 225 >UniRef50_Q6YRP6 Slr6108 protein n=1 Tax=Synechocystis sp. PCC 6803 RepID=Q6YRP6_SYNY3 Length = 269 Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPLKSSADGHIV 56 + CPKCG +V+R K GP F GCS YP C + +K++ + Sbjct: 197 NQYQNADENTAPECPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKTAEEKAAD 256 Query: 57 KV 58 + Sbjct: 257 DI 258 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFAINFKPIAGE 146 + + TA CP+C ++V R+S+ G ++F C YP+C+ +N K + Sbjct: 201 NADENTAPECPKCGK-NMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKTAEEK 253 Score = 48.9 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Query: 60 EGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELIDKPDETA 103 CP CG N+VLR+ + G F GC +YP+C I +E A Sbjct: 206 TAPECPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKTAEEKA 254 >UniRef50_C4V616 DNA topoisomerase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V616_9FIRM Length = 711 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CP CG ++ R GKHG F GCS +P C + + GA+ Sbjct: 626 CPACGRGVMLKRKGKHGDFWGCSAFPQCRMTADDAGGKPNFAGRRVPRGSADGMGAH 682 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 90 CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 C+ I CP C G +++R+ ++G F C +P+C+ + Sbjct: 610 CDAARTAQITGGEGIPCPACGRGVMLKRKGKHG-DFWGCSAFPQCRMTADD 659 Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELID--KP 99 + R L +A + EG CPACG ++ R+G+ G F GC +P+C T KP Sbjct: 605 FARDLCDAARTAQITGGEGIPCPACGRGVMLKRKGKHGDFWGCSAFPQCRMTADDAGGKP 664 Query: 100 DETAITCPQCRT 111 + P+ Sbjct: 665 NFAGRRVPRGSA 676 >UniRef50_C5Z4V5 DNA topoisomerase (Fragment) n=12 Tax=cellular organisms RepID=C5Z4V5_SORBI Length = 1094 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 12/108 (11%) Query: 10 RNNESCPKC-GAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC-- 64 +++ CP C L + ++G F+GC ++P C Y+ S + E Sbjct: 921 KDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIARSLSQQEDETEPTEESPKSFT 980 Query: 65 -------PACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 P + L+QG +G ++ + + + I Sbjct: 981 PRLLGVMPDSDQKVFLKQGPYGYYVQIGEDKKGLFPKRASLSEVKDID 1028 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Query: 100 DETAITCPQCRTGHLVQRRSRYG-KTFHSCDRYPECQFAIN 139 D+ + CP C G L + SRYG F CDR+P+C++ Sbjct: 920 DKDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIAR 960 >UniRef50_D1HI22 DNA topoisomerase (Fragment) n=1 Tax=Vitis vinifera RepID=D1HI22_VITVI Length = 1035 Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 11/82 (13%) Query: 12 NESCPKC-GAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQ------ 62 + +CP C L+ + + G F+GC Q+P C Y+ + D V + Sbjct: 825 SRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYIAKMLDGDDDEEVASQDKTFEEPKA 884 Query: 63 --VCPACGANLVLRQGRFGMFI 82 + P ++L+ G +G ++ Sbjct: 885 LGLSPGSSEKILLKNGPYGFYL 906 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Query: 100 DETAITCPQCRTGHLVQRRSRYG-KTFHSCDRYPECQFA 137 + + TCP C G L+ + SR+G F CD++P+C++ Sbjct: 822 PDKSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPKCKYI 860 >UniRef50_C5A9D2 DNA topoisomerase n=1 Tax=Burkholderia glumae BGR1 RepID=C5A9D2_BURGB Length = 722 Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 4/48 (8%) Query: 98 KPDETAITCPQCRTGHLVQRR----SRYGKTFHSCDRYPECQFAINFK 141 + A CP+C+ G+LV R + G+TFH C+ YPEC+ ++ K Sbjct: 675 PAPDGAKKCPKCKKGYLVPRTVKNGPKAGQTFHGCNNYPECKHSVWPK 722 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%) Query: 13 ESCPKCGAE-LVIRSGKHGP-----FLGCSQYPACDYVR 45 + CPKC LV R+ K+GP F GC+ YP C + Sbjct: 681 KKCPKCKKGYLVPRTVKNGPKAGQTFHGCNNYPECKHSV 719 >UniRef50_Q8K9P7 DNA topoisomerase 1 n=2 Tax=Gammaproteobacteria RepID=TOP1_BUCAP Length = 853 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK----VLEGQVCPACGA 69 C KC +++ ++G+ G F C C R + + + K +C Sbjct: 698 KCEKCKNDMLFKTGRFGNFFMCIN-DTCKNTRKILPNGEISEPKFEPIPFPDILCEKSNT 756 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELI 96 VLR+G G+F +P+ T Sbjct: 757 WFVLREGISGIFFAANTFPKSRETRSP 783 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 52/160 (32%), Gaps = 26/160 (16%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQY---PA---CDYVRPLKSSADGHIVKVLE 60 TV C C ++ I++ G FL C Y P C L S D K E Sbjct: 581 TTVPTEIDCSLCNKKMGIKTAVTGVFLSCLGYNSEPNEKRCKNTINLISLNDLSTTKKEE 640 Query: 61 -----GQVCPACGANL--VLRQGRFGMFIGCINYPECE--------HTELIDKPDETAIT 105 C C + L +FI CIN P C + ++ I Sbjct: 641 KNFHLKNRCKKCNLVMDVYLINENLKIFI-CINNPSCNGYNLKKGIFKKSLN-CSLKKIK 698 Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 C +C+ ++ + R+G F C C+ P Sbjct: 699 CEKCKN-DMLFKTGRFGN-FFMCIND-TCKNTRKILPNGE 735 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 30/158 (18%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINY------PECEH------ 92 +P + V C C + ++ G+F+ C+ Y C++ Sbjct: 570 KPPEEGGMELNTTVPTEIDCSLCNKKMGIKTAVTGVFLSCLGYNSEPNEKRCKNTINLIS 629 Query: 93 ------TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC----------QF 136 T+ +K C +C V + K F C P C + Sbjct: 630 LNDLSTTKKEEKNFHLKNRCKKCNLVMDVYLINENLKIFI-CINNPSCNGYNLKKGIFKK 688 Query: 137 AINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 ++N +C +C +L K G C + C Sbjct: 689 SLNCSLKKIKCEKCKNDMLF-KTGRFGNFFMCINDTCK 725 Score = 46.2 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 4/101 (3%) Query: 7 FTVRNNESCPKCGAEL-VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 F ++N C KC + V ++ C P+C+ K + L+ C Sbjct: 643 FHLKN--RCKKCNLVMDVYLINENLKIFICINNPSCNGYNLKKGIFKKSLNCSLKKIKCE 700 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 C +++ + GRFG F CIN C++T I E + Sbjct: 701 KCKNDMLFKTGRFGNFFMCIND-TCKNTRKILPNGEISEPK 740 >UniRef50_Q8L288 DNA restriction n=1 Tax=Proteus vulgaris RepID=Q8L288_PROVU Length = 357 Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 SC CG +++R+G F GCS +P C R Sbjct: 324 SCSICGGTMLLRTGNKKTFWGCSNFPECRNTR 355 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 34 GCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 G S + ++S L+ C CG ++LR G F GC N+PEC +T Sbjct: 302 GDSNFEK-------QTSDGISSAVPLDSNSCSICGGTMLLRTGNKKTFWGCSNFPECRNT 354 Query: 94 ELI 96 + Sbjct: 355 REV 357 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 N+ + + + +C C L++ ++ KTF C +PEC+ Sbjct: 304 SNFEKQTSDGISSAVPLDSNSCSICGGTMLLRTGNK--KTFWGCSNFPECRNT 354 >UniRef50_A3WL27 Probable transmembrane protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WL27_9GAMM Length = 280 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%) Query: 8 TVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRP 46 T + CPKC +V R + GP F GC ++P C RP Sbjct: 237 TRPTTQVCPKCEGPMVKRIARRGPNRGESFWGCKRFPKCHGTRP 280 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 5/49 (10%) Query: 52 DGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 QVCP C +V R R G F GC +P+C T Sbjct: 232 PPSPNTRPTTQVCPKCEGPMVKRIARRGPNRGESFWGCKRFPKCHGTRP 280 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%) Query: 95 LIDKPDETAITCPQCRTGH---LVQRRSRYGKTFHSCDRYPECQFAIN 139 T CP+C + +R G++F C R+P+C Sbjct: 233 PSPNTRPTTQVCPKCEGPMVKRIARRGPNRGESFWGCKRFPKCHGTRP 280 >UniRef50_A1TJM5 DNA topoisomerase n=55 Tax=Proteobacteria RepID=A1TJM5_ACIAC Length = 680 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 24/54 (44%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 V CP CGA R+GK G F CS+YP C + S+ G + + Sbjct: 621 VPAGPPCPLCGAATRKRTGKTGAFWSCSRYPDCKGTVAIDSAEAGRRNGPRKPR 674 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 ++V G CP CGA R G+ G F C YP+C+ T ID + P+ Sbjct: 613 REATLAIRVPAGPPCPLCGAATRKRTGKTGAFWSCSRYPDCKGTVAIDSAEAGRRNGPR 671 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 CP C ++R+ F SC RYP+C+ + Sbjct: 622 PAGPPCPLCGAA--TRKRTGKTGAFWSCSRYPDCKGTV 657 >UniRef50_C4ZF87 DNA topoisomerase I n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZF87_EUBR3 Length = 461 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 29 HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYP 88 G CS+ P S + + +CP CG L L QG FG F+GC NYP Sbjct: 392 KGKCYECSRNPNI-NTEVNVSEEKARQKQRYDPNICPECGGRLRLIQGPFGKFMGCENYP 450 Query: 89 ECEHTELIDKP 99 C+ + K Sbjct: 451 TCKFNRRVRKK 461 Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 K+ + CP+CG L + G G F+GC YP C + R ++ Sbjct: 413 EKARQKQRYDPNICPECGGRLRLIQGPFGKFMGCENYPTCKFNRRVRKK 461 >UniRef50_Q0W2I3 DNA topoisomerase I n=2 Tax=Euryarchaeota RepID=Q0W2I3_UNCMA Length = 767 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 31/106 (29%), Gaps = 12/106 (11%) Query: 15 CPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP CG+ LV+R K F+ CS +P C + V E Sbjct: 589 CPLCGSALVVRERKSDKNKFIACSGFPNCRNTYNVPPGTLKFDKTVCEKHRLHHVKVTPP 648 Query: 73 LRQGRFGMFI-------GCINYPECEHTELIDKPDETAITCPQCRT 111 +G G + GC P C P P R Sbjct: 649 STKGPDGKAVRGKAYDFGC---PACRKENPSVMPPCVKTCKPDLRA 691 Score = 45.5 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 D CP C + +V+ R F +C +P C+ N P Sbjct: 583 DSDIGPCPLCGSALVVRERKSDKNKFIACSGFPNCRNTYNVPP 625 >UniRef50_B9XT21 Restriction endonuclease n=1 Tax=bacterium Ellin514 RepID=B9XT21_9BACT Length = 263 Score = 55.9 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Query: 2 AKSALFTVRNN--ESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPL 47 + ++ N+ + CPKC +E+V+R+ GP F GCS YP C Y+ + Sbjct: 210 QNPEILSLLNDTRKLCPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYILNI 262 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Query: 84 CINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR---YGKTFHSCDRYPECQFAIN 139 C N ++ E++ ++T CP+C + +++ R G F C YP+C + +N Sbjct: 203 CENLNWKQNPEILSLLNDTRKLCPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYILN 261 Score = 49.7 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 41 CDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 C+ K + + + ++CP C + +VLR G F GC YP+C + Sbjct: 203 CEN-LNWKQNPEILSLLNDTRKLCPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYILN 261 Query: 96 ID 97 I Sbjct: 262 IS 263 >UniRef50_Q4A5N2 DNA topoisomerase n=2 Tax=Mycoplasma RepID=Q4A5N2_MYCS5 Length = 625 Score = 55.5 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGH 54 M K+ L +E CP C +L+IR + F+GC +P C Y R + Sbjct: 558 MEKTRLEDNFLDEDCPDCSGKLLIRLNRKKQKFIGCKSFPNCTYTRSYEDPDAKK 612 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CP C +G L+ R +R + F C +P C + +++ Sbjct: 571 DCPDC-SGKLLIRLNRKKQKFIGCKSFPNCTYTRSYE 606 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 61 GQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETA 103 + CP C L++R R FIGC ++P C +T + PD Sbjct: 569 DEDCPDCSGKLLIRLNRKKQKFIGCKSFPNCTYTRSYEDPDAKK 612 >UniRef50_B0G7K1 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G7K1_9FIRM Length = 365 Score = 55.5 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKSSADG 53 + + CP CG ELV+R+ + G F GCS +P C Y+ + + + Sbjct: 302 QKEIPATTGKIICPVCGGELVLRTARRGANTGKQFYGCSSFPRCRYILNIAENLEK 357 Score = 49.3 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Query: 97 DKPDETA-ITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFAIN 139 + P T I CP C G LV R +R G K F+ C +P C++ +N Sbjct: 304 EIPATTGKIICPVCG-GELVLRTARRGANTGKQFYGCSSFPRCRYILN 350 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELIDKPDET 102 I +CP CG LVLR R G F GC ++P C + I + E Sbjct: 299 EEVQKEIPATTGKIICPVCGGELVLRTARRGANTGKQFYGCSSFPRCRYILNIAENLEK 357 >UniRef50_Q1NX61 DNA topoisomerase I:Restriction endonuclease n=2 Tax=Bacteria RepID=Q1NX61_9DELT Length = 273 Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 5/41 (12%) Query: 14 SCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKS 49 CP+C LV+R K G F GCS YP C Y + + Sbjct: 233 RCPECSKNLVLREAKRGSRIGSRFWGCSGYPRCRYTQEYRE 273 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 93 TELIDKPDETAITCPQCRTGHLV---QRRSRYGKTFHSCDRYPECQFAINFK 141 T + + CP+C ++ +R SR G F C YP C++ ++ Sbjct: 221 TANTEGSQQATGRCPECSKNLVLREAKRGSRIGSRFWGCSGYPRCRYTQEYR 272 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%) Query: 64 CPACGANLVLRQGRFG-----MFIGCINYPECEHTE 94 CP C NLVLR+ + G F GC YP C +T+ Sbjct: 234 CPECSKNLVLREAKRGSRIGSRFWGCSGYPRCRYTQ 269 >UniRef50_C5A9C5 UvrD/REP helicase n=2 Tax=Proteobacteria RepID=C5A9C5_BURGB Length = 945 Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 V E CP C LV+R+G +G F CS +PAC Y +P K G+ PA Sbjct: 876 VVQEEECPSCRRGVLVLRNGPYGEFRSCSNFPACKY-KPKKRGNAPVPATTHGGRPAPA 933 Score = 45.9 bits (107), Expect = 7e-04, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Query: 57 KVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEH 92 +V++ + CP+C LVLR G +G F C N+P C++ Sbjct: 875 QVVQEEECPSCRRGVLVLRNGPYGEFRSCSNFPACKY 911 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 CP CR G LV R YG+ F SC +P C++ Sbjct: 879 EEECPSCRRGVLVLRNGPYGE-FRSCSNFPACKY 911 >UniRef50_A5CF60 DNA topoisomerase n=2 Tax=Orientia tsutsugamushi RepID=A5CF60_ORITB Length = 788 Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 10/114 (8%) Query: 5 ALFTVRNNES----CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKS--SADGHIVK 57 LF V+N E+ C C +L ++ K+G FL C+ YP+C++ R + + + ++ K Sbjct: 584 FLFPVQNGETDHKLCTLCKVGKLSLKLSKYGAFLACNNYPSCNFTRNIAAAFENNDNLPK 643 Query: 58 VLEGQV---CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 + + L++G FG +I ++ + P + PQ Sbjct: 644 GKNNKAIGYSDDMQKTIYLKEGPFGWYIQAGEDSTNKNDKPKRVPISVISSSPQ 697 Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + + C C+ G L + S+YG F +C+ YP C F N Sbjct: 587 PVQNGETDHKLCTLCKVGKLSLKLSKYG-AFLACNNYPSCNFTRN 630 Score = 42.8 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR 110 ++C C L L+ ++G F+ C NYP C T I E P+ + Sbjct: 596 KLCTLCKVGKLSLKLSKYGAFLACNNYPSCNFTRNIAAAFENNDNLPKGK 645 >UniRef50_UPI000179C790 UPI000179C790 related cluster n=3 Tax=Bos taurus RepID=UPI000179C790 Length = 710 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 3 KSALFTVRNNESCPKCGAELVIR--SGKHGPFLGCSQYPACDY 43 K + CPKCG + + +G +G FLGCS+YP C Y Sbjct: 668 KQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKY 710 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 19/43 (44%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 + ++ CP+C G L + + F C RYP C++ Sbjct: 668 KQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKY 710 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLR--QGRFGMFIGCINYPECEH 92 +++ + + +CP CG + + G +G F+GC YP C++ Sbjct: 658 EFIHIPQDEYKQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKY 710 >UniRef50_C0ZFC8 Putative uncharacterized protein n=2 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZFC8_BREBN Length = 238 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 K C KC +++V+R G G F GC YP C ++ Sbjct: 193 KVIAQFQSKTHICDKCRSQMVLRKGAKGEFYGCKGYPKCRNIK 235 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 +C C + +VLR+G G F GC YP+C + + Sbjct: 203 HICDKCRSQMVLRKGAKGEFYGCKGYPKCRNIKA 236 >UniRef50_A4JFS2 DNA topoisomerase III n=4 Tax=Proteobacteria RepID=A4JFS2_BURVG Length = 760 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFA 137 H P CP+C+TG +V R++R G K F C YP C+ A Sbjct: 701 HESSKTAPSAAVKACPECKTGKMVVRQARSGPSAGKPFLGCTNYPRCKHA 750 Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 13 ESCPKCG-AELVIRSGKHGP-----FLGCSQYPACDYVRPLKSSADGH 54 ++CP+C ++V+R + GP FLGC+ YP C + + Sbjct: 713 KACPECKTGKMVVRQARSGPSAGKPFLGCTNYPRCKHAERMPEKEPAR 760 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Query: 62 QVCPACG-ANLVLRQGRFGM-----FIGCINYPECEHTELIDKPDE 101 + CP C +V+RQ R G F+GC NYP C+H E + + + Sbjct: 713 KACPECKTGKMVVRQARSGPSAGKPFLGCTNYPRCKHAERMPEKEP 758 >UniRef50_Q2FA01 Putative uncharacterized protein n=1 Tax=Vibrio sp. DAT722 RepID=Q2FA01_9VIBR Length = 237 Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 5/50 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPL 47 K + + ++ CP+CG+E+V+R K G F GCS +P C V+ Sbjct: 187 KEVVTSKASSNQCPRCGSEMVLRETKRGENIGKQFWGCSTFPKCRAVKQF 236 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRY---GKTFHSCDRYPECQ 135 +H + + ++ CP+C + +++ R GK F C +P+C+ Sbjct: 184 KHVKEVVTSKASSNQCPRCGSEMVLRETKRGENIGKQFWGCSTFPKCR 231 Score = 45.9 bits (107), Expect = 7e-04, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Query: 64 CPACGANLVLRQGRFGM-----FIGCINYPECEHTELID 97 CP CG+ +VLR+ + G F GC +P+C + + Sbjct: 199 CPRCGSEMVLRETKRGENIGKQFWGCSTFPKCRAVKQFN 237 >UniRef50_C5V7F2 Restriction endonuclease n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7F2_9PROT Length = 326 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 23/45 (51%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI 55 SC CG ++V R+GK G F GC+ +P C + + + I Sbjct: 282 TTPSCSSCGIKMVRRTGKRGDFWGCANFPKCRQMLNVTLAQRQGI 326 Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 20/43 (46%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 C +CG +V R G+ G F GC N+P+C + I Sbjct: 284 PSCSSCGIKMVRRTGKRGDFWGCANFPKCRQMLNVTLAQRQGI 326 Score = 42.0 bits (97), Expect = 0.010, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 107 PQCRT-GHLVQRRSRYGKTFHSCDRYPECQFAIN 139 P C + G + RR+ F C +P+C+ +N Sbjct: 284 PSCSSCGIKMVRRTGKRGDFWGCANFPKCRQMLN 317 >UniRef50_B3PMD8 DNA topoisomerase I n=3 Tax=Mycoplasma RepID=B3PMD8_MYCA5 Length = 620 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Query: 12 NESCPKCGAELVIRSG--KHGPFLGCSQYPACDYVRP 46 SCP+CG+ L+ R+ KH F+GCS +PAC Y Sbjct: 561 ERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSEN 597 Score = 50.5 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 I + +CP+C + L + S+ F C +P C+++ N Sbjct: 553 SIMPQEFLERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSEN 597 Score = 45.9 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 55 IVKVLEGQVCPACGANLVLRQG--RFGMFIGCINYPECEHTELIDKPDE 101 + + + CP CG+ L+ R + FIGC N+P C ++E D Sbjct: 555 MPQEFLERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSENADGTPT 603 >UniRef50_D2R6E6 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R6E6_9PLAN Length = 255 Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 5/42 (11%) Query: 8 TVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYV 44 TV + CPKCGA +V+R+ K+G FLGCS YP C + Sbjct: 211 TVSGPQLCPKCGAAMVVRTAKNGPNAGQKFLGCSNYPKCQTM 252 Score = 45.1 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 5/40 (12%) Query: 58 VLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEH 92 V Q+CP CGA +V+R + G F+GC NYP+C+ Sbjct: 212 VSGPQLCPKCGAAMVVRTAKNGPNAGQKFLGCSNYPKCQT 251 Score = 40.8 bits (94), Expect = 0.021, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSR----YGKTFHSCDRYPECQFAINF 140 T CP+C +V R ++ G+ F C YP+CQ Sbjct: 205 TTRPSATVSGPQLCPKCGA-AMVVRTAKNGPNAGQKFLGCSNYPKCQTMAKL 255 >UniRef50_UPI0001C3753D NERD domain protein n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3753D Length = 295 Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Query: 13 ESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPL 47 CP CGA+L+IR+ K G F GCS YP C Y + + Sbjct: 256 RICPNCGAKLIIRTAKRGYNIGHKFYGCSNYPNCKYTKSI 295 Score = 48.6 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELI 96 + ++ + ++CP CGA L++R + G F GC NYP C++T+ I Sbjct: 238 ITSDEAKKEHIKRIEQRKRICPNCGAKLIIRTAKRGYNIGHKFYGCSNYPNCKYTKSI 295 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY---GKTFHSCDRYPECQFA 137 + + EH + I++ CP C +++ R G F+ C YP C++ Sbjct: 240 SDEAKKEHIKRIEQRKRI---CPNCGAKLIIRTAKRGYNIGHKFYGCSNYPNCKYT 292 >UniRef50_Q3BZV2 DNA topoisomerase n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BZV2_XANC5 Length = 728 Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPACDYVRP 46 C KC + +R+ GPF GCS +P C + P Sbjct: 690 CEKCAKGTMQLRNSSRGPFYGCSNFPVCKHTAP 722 Score = 49.3 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + C +C G + R S G F+ C +P C+ Sbjct: 686 SGAPCEKCAKGTMQLRNSSRG-PFYGCSNFPVCKHTAP 722 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 45 RPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDK 98 + +S G G C C + LR G F GC N+P C+HT D Sbjct: 671 KRKTASKGGKKANGGSGAPCEKCAKGTMQLRNSSRGPFYGCSNFPVCKHTAPADS 725 >UniRef50_B4S2M3 Putative transmembrane protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S2M3_ALTMD Length = 252 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%) Query: 14 SCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVR 45 +CP+CG++LV R K G FLGCS +P C Y Sbjct: 216 TCPRCGSDLVERQAKRGAHAGNTFLGCSAFPKCRYTE 252 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%) Query: 99 PDETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFA 137 + TCP+C + LV+R+++ G TF C +P+C++ Sbjct: 210 EEIKKTTCPRCGS-DLVERQAKRGAHAGNTFLGCSAFPKCRYT 251 Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTE 94 V+ ++ CP CG++LV RQ + G F+GC +P+C +TE Sbjct: 206 EPKVEEIKKTTCPRCGSDLVERQAKRGAHAGNTFLGCSAFPKCRYTE 252 >UniRef50_A1SXM8 DNA-binding NERD domain-containing protein n=18 Tax=Proteobacteria RepID=A1SXM8_PSYIN Length = 269 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVR 45 + V ++CPKCG +++R K G F GCS +P C V Sbjct: 218 VEAKQAPKVIEEKTCPKCGTLMILREAKKGKNAGNQFWGCSNFPQCRTVV 267 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEH 92 KV+E + CP CG ++LR+ + G F GC N+P+C Sbjct: 221 KQAPKVIEEKTCPKCGTLMILREAKKGKNAGNQFWGCSNFPQCRT 265 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 5/42 (11%) Query: 102 TAITCPQCRTGHLVQRRSRYGKT----FHSCDRYPECQFAIN 139 TCP+C T ++ R ++ GK F C +P+C+ ++ Sbjct: 228 EEKTCPKCGT-LMILREAKKGKNAGNQFWGCSNFPQCRTVVD 268 >UniRef50_Q58078 Uncharacterized protein MJ0664 n=4 Tax=Methanocaldococcus RepID=Y664_METJA Length = 301 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 + + ++ +CP CGA+L + K G FLGC+ YP C Y R K + Sbjct: 256 DIMSKIDDNTCPWCGAKLRVVRTKKGEFLGCTNYPNCLYRRFPKKN 301 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP 99 K+ A I+ ++ CP CGA L + + + G F+GC NYP C + K Sbjct: 249 NKNPAILDIMSKIDDNTCPWCGAKLRVVRTKKGEFLGCTNYPNCLYRRFPKKN 301 Score = 41.2 bits (95), Expect = 0.018, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 2/32 (6%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 TCP C V R + F C YP C + Sbjct: 265 TCPWCGAKLRVVRTKK--GEFLGCTNYPNCLY 294 >UniRef50_A4VK17 DNA topoisomerase I: Restriction endonuclease n=2 Tax=Proteobacteria RepID=A4VK17_PSEU5 Length = 298 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 5/44 (11%) Query: 11 NNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKS 49 CP C A +V R K G F GCSQYP C R Sbjct: 254 TQPICPTCHAPMVQRVAKRGSNVGNTFWGCSQYPKCKTTRNEMP 297 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%) Query: 97 DKPDETAITCPQCRTGHL---VQRRSRYGKTFHSCDRYPECQFAINFKP 142 P T CP C + +R S G TF C +YP+C+ N P Sbjct: 249 QPPRGTQPICPTCHAPMVQRVAKRGSNVGNTFWGCSQYPKCKTTRNEMP 297 Score = 48.6 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%) Query: 55 IVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTEL 95 +CP C A +V R + G F GC YP+C+ T Sbjct: 249 QPPRGTQPICPTCHAPMVQRVAKRGSNVGNTFWGCSQYPKCKTTRN 294 >UniRef50_A8S9Z2 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S9Z2_9FIRM Length = 273 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 15 CPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPL 47 CP+CG LV R + G F GCS YP C ++ Sbjct: 236 CPQCGGRLVPRVARQGSGAGKTFWGCSNYPKCHFIYNK 273 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFAIN 139 I KPD T CPQC G LV R +R G KTF C YP+C F N Sbjct: 226 PIIKPDGT-WICPQCG-GRLVPRVARQGSGAGKTFWGCSNYPKCHFIYN 272 Score = 48.2 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 31 PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCI 85 F S ++ +++ I +CP CG LV R R G F GC Sbjct: 204 KFTDASDEQKARHIEEVRAKHYPIIKPDGTW-ICPQCGGRLVPRVARQGSGAGKTFWGCS 262 Query: 86 NYPECEHTEL 95 NYP+C Sbjct: 263 NYPKCHFIYN 272 >UniRef50_B6KRJ5 DNA topoisomerase n=3 Tax=Toxoplasma gondii RepID=B6KRJ5_TOXGO Length = 1832 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 6 LFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG 53 + + CP CG L +R G F+GCS YP C Y + + Sbjct: 1764 VGSSFTPPLCPSCGEGVLKLRIHSRGIFVGCSAYPRCTYTQSVPPPQKR 1812 Score = 46.6 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 T CP C G L R G F C YP C + + P Sbjct: 1769 TPPLCPSCGEGVLKLRIHSRG-IFVGCSAYPRCTYTQSVPP 1808 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPD 100 + +CP+CG L LR G+F+GC YP C +T+ + P Sbjct: 1751 RATEASAKRGTDGVGSSFTPPLCPSCGEGVLKLRIHSRGIFVGCSAYPRCTYTQSVPPPQ 1810 Query: 101 E 101 + Sbjct: 1811 K 1811 >UniRef50_Q04TE1 DNA topoisomerase n=4 Tax=Leptospira RepID=Q04TE1_LEPBJ Length = 613 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 91 EHTELIDKPDETAI-TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 E E+ +K ET+ CP CR G L ++++ K F+ C R+P+C++ P Sbjct: 559 EWAEIREKKKETSWGICPLCRDGSLQKKKTSRKKEFYQCSRFPDCEYVNYELP 611 Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Query: 15 CPKC--GAELVIRSGKHGPFLGCSQYPACDYV 44 CP C G+ ++ + F CS++P C+YV Sbjct: 575 CPLCRDGSLQKKKTSRKKEFYQCSRFPDCEYV 606 >UniRef50_C7NZB3 DNA topoisomerase type IA zn finger domain protein n=5 Tax=Halobacteriaceae RepID=C7NZB3_HALMD Length = 255 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 22/167 (13%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C LV +G + CS C + G C C +R Sbjct: 104 CPACAGTLVRSNGA----VRCSN---C------AERYGLPADATITGGRCRDCRLP-TIR 149 Query: 75 QGRFGMFIGCINYPECEHTE-LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 R F C++ ECE + + + CP+C R R G F C+ +P+ Sbjct: 150 TERGRAFELCLDR-ECESLDDRVIDAFDREWACPECDGDL---RIVRKGGLFAGCEHHPD 205 Query: 134 CQ--FAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 C+ FAI + C C PL + + C+ Q +P + Sbjct: 206 CEAAFAIPTGVVVDTC-ACGLPLFETAGGRRCLDATCSQAQVSEPAT 251 >UniRef50_C6N6E9 DNA topoisomerase n=2 Tax=Legionella drancourtii LLAP12 RepID=C6N6E9_9GAMM Length = 668 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 SCP C L+ R G G + GCS YP C K Sbjct: 621 SCPDCQKTLMKRQGSKGAWWGCSGYPQCKTRFSDK 655 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 21/55 (38%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 K HI+ CP C L+ RQG G + GC YP+C+ Sbjct: 605 EKQKPASHILGSNSTYSCPDCQKTLMKRQGSKGAWWGCSGYPQCKTRFSDKHGMP 659 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CP C+ L++R+ G + C YP+C+ + K Sbjct: 622 CPDCQKT-LMKRQGSKG-AWWGCSGYPQCKTRFSDK 655 >UniRef50_C6NY48 DNA topoisomerase n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NY48_9GAMM Length = 776 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 20/100 (20%) Query: 57 KVLEGQVCPACGANLVLR-----QGRFGMFIGCINY------------PECEHTELIDKP 99 + L Q CP CG + V+R + R F C N P+ E + Sbjct: 612 QPLRAQPCPICGGDAVVRRLQSKKNRKVFFWSCSNRDAHPLLQDDNGKPDKPFAERKEDS 671 Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CP C + + GKT++ C P CQ A Sbjct: 672 GPPGPECPHCAGTATRTKTTSTGKTYYRC---PSCQAAFW 708 Score = 44.7 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 15/111 (13%) Query: 13 ESCPKCGAELVIR-----SGKHGPFLGCSQ---YPAC--DYVRPLKSSADGHIVKVLEGQ 62 + CP CG + V+R + F CS +P D +P K A+ G Sbjct: 617 QPCPICGGDAVVRRLQSKKNRKVFFWSCSNRDAHPLLQDDNGKPDKPFAERKEDSGPPGP 676 Query: 63 VCPAC-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRT 111 CP C G + G + C P C+ D+ D + P Sbjct: 677 ECPHCAGTATRTKTTSTGKTYYRC---PSCQAAFWPDREDPQRLGAPWLPA 724 Score = 38.5 bits (88), Expect = 0.092, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 19/95 (20%) Query: 95 LIDKPDETAITCPQCRTGHLVQR-RSRYGK--TFHSCDRYP-----ECQFAINFKPIAG- 145 + A CP C +V+R +S+ + F SC + KP A Sbjct: 608 SSSQQPLRAQPCPICGGDAVVRRLQSKKNRKVFFWSCSNRDAHPLLQDDNGKPDKPFAER 667 Query: 146 ---------ECPEC-HYPLLIEKKTAQGVKHFCAS 170 ECP C + + + C S Sbjct: 668 KEDSGPPGPECPHCAGTATRTKTTSTGKTYYRCPS 702 >UniRef50_A3BAP2 DNA topoisomerase n=6 Tax=Poaceae RepID=A3BAP2_ORYSJ Length = 1180 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 12/84 (14%) Query: 11 NNESCPKC-GAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQ----- 62 ++ CP C L + ++G F+GC ++P C Y+ S D E Q Sbjct: 984 DSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIARTLSDDDDETEASDETQRTFTP 1043 Query: 63 ----VCPACGANLVLRQGRFGMFI 82 P + L+QG +G ++ Sbjct: 1044 RLLGALPDSDEKVFLKQGPYGHYV 1067 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 100 DETAITCPQCRTGHLVQRRSRYG-KTFHSCDRYPECQFAIN 139 D + CP C G L + SRYG F CDR+P+C++ Sbjct: 982 DNDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIAR 1022 >UniRef50_A2RKZ6 LtrE protein n=3 Tax=Lactococcus lactis RepID=A2RKZ6_LACLM Length = 216 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 20/39 (51%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKS 49 E CP+C + L +R GK+G F GC +P C P Sbjct: 4 TTEVCPRCHSRLTLREGKYGKFWGCKNFPKCVGTLPYDR 42 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK 98 +VCP C + L LR+G++G F GC N+P+C T D+ Sbjct: 6 EVCPRCHSRLTLREGKYGKFWGCKNFPKCVGTLPYDR 42 >UniRef50_Q5UEY8 Putative uncharacterized protein n=2 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UEY8_9PROT Length = 234 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%) Query: 15 CPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPLKS 49 CP+CG+ LV R+ K+G FLGC YP C + R L Sbjct: 157 CPRCGSNLVERTVKNGANAGSQFLGCEDYPKCRFTRDLPP 196 Score = 48.9 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSR----YGKTFHSCDRYPECQFAINFKPIA 144 H + + + CP+C + +LV+R + G F C+ YP+C+F + P+ Sbjct: 143 HIQSLRDRHSSTTICPRCGS-NLVERTVKNGANAGSQFLGCEDYPKCRFTRDLPPVE 198 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%) Query: 63 VCPACGANLVLRQGRFG-----MFIGCINYPECEHTELIDKPDETAIT 105 +CP CG+NLV R + G F+GC +YP+C T + P E+ + Sbjct: 156 ICPRCGSNLVERTVKNGANAGSQFLGCEDYPKCRFTRDL-PPVESGVR 202 >UniRef50_Q702B0 DNA topoisomerase n=1 Tax=uncultured crenarchaeote RepID=Q702B0_9CREN Length = 715 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 10/99 (10%) Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRS-RYGKTFHSCDRY--PECQFAI------N 139 E ++ + + + CP+C G +V +S + K F +C ++ C+ Sbjct: 603 EIKNGLTTSRVEMSYGKCPKCHIGEMVLIKSNKTKKRFLACSKFRVTGCKTITIVPQFGL 662 Query: 140 FKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 K C C +P+L + C ++ C + +S Sbjct: 663 IKNDNSVC-TCGWPILRIIFKRFSPRKICVNRSCRENLS 700 >UniRef50_Q18DJ2 DNA topoisomerase I n=2 Tax=Haloquadratum walsbyi RepID=Q18DJ2_HALWD Length = 250 Score = 52.8 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE-LIDKPDETAITCPQCRTGHLV 115 ++ + C +CG ++ + G ECE + + + + TCP C + Sbjct: 132 ATVQDECCESCGLPMI--EATAGERFSICLDRECESLDDAVRERFDDEWTCPDCGAPMQI 189 Query: 116 QRRSRYGKTFHSCDRYPECQ--FAINFKPIAGECPECHYPLLIEKKTAQGVKHFC 168 RRS G+ C YP C+ FAI + C C P+ + Q + C Sbjct: 190 IRRS--GRLLAGCSGYPACETAFAIPTGVVVDVC-SCGLPIFETSRGQQCLDGTC 241 Score = 40.8 bits (94), Expect = 0.021, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 18/119 (15%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ-V 63 +E C CG ++ + F C + S D + + + + Sbjct: 129 PKGATVQDECCESCGLPMIEATAGE-RFSIC--------LDRECESLDDAVRERFDDEWT 179 Query: 64 CPACGANL--VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP CGA + + R GR + GC YP CE I + C G + SR Sbjct: 180 CPDCGAPMQIIRRSGR--LLAGCSGYPACETAFAIPTGVVVDV----CSCGLPIFETSR 232 >UniRef50_C3SA84 DNA topoisomerase n=1 Tax=Brachypodium distachyon RepID=C3SA84_BRADI Length = 856 Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 12/83 (14%) Query: 12 NESCPKC-GAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQ------ 62 + CP C L + + G F+GC ++P C Y+ S D E + Sbjct: 676 SRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIARTLSDEDDENEACEETKWNFEPR 735 Query: 63 ---VCPACGANLVLRQGRFGMFI 82 V P + L+QG +G +I Sbjct: 736 LLGVMPNLNEKVFLKQGPYGYYI 758 Score = 48.9 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 100 DETAITCPQCRTGHLVQRRSRYG-KTFHSCDRYPECQFA----INFKPIAGECPECHYPL 154 D+ + CP C G L + SR+G F CDR+P+C++ + C E + Sbjct: 673 DDASRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIARTLSDEDDENEACEETKWNF 732 >UniRef50_A6AAL5 Restriction endonuclease family n=5 Tax=Vibrio RepID=A6AAL5_VIBCH Length = 271 Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%) Query: 1 MAKSALFTVRNN---ESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYV 44 M K + + + CP C + LVIR K G F GCS YP C Y Sbjct: 217 MNKPDIDEPTPDPHSKVCPNCQSNLVIRVAKKGRNAGKSFYGCSAYPKCRYT 268 Score = 47.8 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 5/43 (11%) Query: 99 PDETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFA 137 PD + CP C++ +LV R ++ G K+F+ C YP+C++ Sbjct: 227 PDPHSKVCPNCQS-NLVIRVAKKGRNAGKSFYGCSAYPKCRYT 268 Score = 45.9 bits (107), Expect = 7e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTE 94 D + +VCP C +NLV+R + G F GC YP+C +T Sbjct: 212 DGRSFMNKPDIDEPTPDPHSKVCPNCQSNLVIRVAKKGRNAGKSFYGCSAYPKCRYTC 269 >UniRef50_A0R979 DNA topoisomerase 3 n=95 Tax=Bacteria RepID=TOP3_BACAH Length = 729 Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 11/105 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 K + +SCP CG ++ +GK G L C C + + + + + Sbjct: 602 KKYKHDNISTKSCPDCGKPMLEVNGKKGKMLVCQDR-ECGHRKNVSRTTNAR-------- 652 Query: 63 VCPACGANLVLRQGRFGMFIGC-INYPECEHTELIDKPDETAITC 106 CP C L LR G C Y E T + E+ Sbjct: 653 -CPQCKKKLELRGEGAGQIFACKCGYREKLSTFQERRKKESGNKA 696 Score = 49.3 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 18/120 (15%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 +KSS + + + CP CG ++ G+ G + C + EC H + + + T C Sbjct: 597 IKSSDKKYKHDNISTKSCPDCGKPMLEVNGKKGKMLVCQDR-ECGHRKNVSR--TTNARC 653 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 PQC+ L R G+ F +C +C + +K++ Sbjct: 654 PQCKK-KLELRGEGAGQIF-AC----KCGYREKLSTFQER---------RKKESGNKADK 698 Score = 41.6 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%) Query: 140 FKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 CP+C P+L E +G C ++CG Sbjct: 607 DNISTKSCPDCGKPML-EVNGKKGKMLVCQDRECGHR 642 >UniRef50_C0A7I9 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A7I9_9BACT Length = 246 Score = 52.4 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Query: 8 TVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPLK 48 N CP+CG + R + GP F GC+ +P C R + Sbjct: 201 AKENAPLCPECGKPMKRRKARTGPNAGKDFWGCTGFPDCKTTREIP 246 Score = 50.1 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELI 96 + L ++ +CP CG + R+ R G F GC +P+C+ T I Sbjct: 187 FREQLTTARVETRAAKENAPLCPECGKPMKRRKARTGPNAGKDFWGCTGFPDCKTTREI 245 Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 100 DETAITCPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFA 137 E A CP+C + +R++R G K F C +P+C+ Sbjct: 202 KENAPLCPECGKP-MKRRKARTGPNAGKDFWGCTGFPDCKTT 242 >UniRef50_C4ZL79 Restriction endonuclease n=4 Tax=Rhodocyclaceae RepID=C4ZL79_THASP Length = 317 Score = 52.4 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 +CP CG ++ R G HG F GC ++P C ++ S Sbjct: 276 TTPTCPSCGVKMAARDGTHGRFWGCVRFPKCRATLQMRGS 315 Score = 46.2 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 CP+CG + R G G F GC+ +P+C T Sbjct: 278 PTCPSCGVKMAARDGTHGRFWGCVRFPKCRAT 309 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3A7H8 DNA topoisomerase n=13 Tax=Bacteria RepID=Q3A7H8... 224 1e-57 UniRef50_B5EJ79 DNA topoisomerase n=61 Tax=Proteobacteria RepID=... 216 3e-55 UniRef50_A0LDV2 DNA topoisomerase I n=7 Tax=Proteobacteria RepID... 205 7e-52 UniRef50_Q01N68 DNA topoisomerase n=7 Tax=Bacteria RepID=Q01N68_... 204 1e-51 UniRef50_Q2LT40 DNA topoisomerase n=2 Tax=Bacteria RepID=Q2LT40_... 199 3e-50 UniRef50_A8ZW15 DNA topoisomerase n=3 Tax=Desulfobacteraceae Rep... 190 1e-47 UniRef50_Q1ILA9 DNA topoisomerase n=9 Tax=Bacteria RepID=Q1ILA9_... 190 2e-47 UniRef50_D0LR99 DNA topoisomerase n=169 Tax=cellular organisms R... 185 5e-46 UniRef50_B5YKX8 DNA topoisomerase n=1 Tax=Thermodesulfovibrio ye... 184 1e-45 UniRef50_B9L7D9 DNA topoisomerase n=1 Tax=Nautilia profundicola ... 183 3e-45 UniRef50_D1U7W1 DNA topoisomerase n=1 Tax=Desulfovibrio aespoeen... 181 6e-45 UniRef50_C6HWV0 DNA topoisomerase n=1 Tax=Leptospirillum ferrodi... 181 9e-45 UniRef50_B0VJB5 DNA topoisomerase n=1 Tax=Candidatus Cloacamonas... 181 1e-44 UniRef50_C9LM02 DNA topoisomerase n=1 Tax=Dialister invisus DSM ... 178 1e-43 UniRef50_A6DDI1 DNA topoisomerase n=1 Tax=Caminibacter mediatlan... 177 1e-43 UniRef50_A3EPL6 DNA topoisomerase n=2 Tax=Leptospirillum sp. Gro... 176 3e-43 UniRef50_UPI0001698F80 DNA topoisomerase I n=1 Tax=Endoriftia pe... 175 5e-43 UniRef50_P45771 Uncharacterized protein yrdD n=427 Tax=Gammaprot... 174 1e-42 UniRef50_C1ABE5 DNA topoisomerase n=1 Tax=Gemmatimonas aurantiac... 173 2e-42 UniRef50_Q7NGH1 DNA topoisomerase n=1 Tax=Gloeobacter violaceus ... 173 3e-42 UniRef50_C1F6V0 DNA topoisomerase n=1 Tax=Acidobacterium capsula... 173 3e-42 UniRef50_Q9ZMV7 DNA topoisomerase 1 n=47 Tax=Epsilonproteobacter... 170 1e-41 UniRef50_A9FRC6 DNA topoisomerase I n=1 Tax=Sorangium cellulosum... 170 2e-41 UniRef50_C1XK22 DNA topoisomerase n=1 Tax=Meiothermus ruber DSM ... 168 6e-41 UniRef50_Q1PYZ6 DNA topoisomerase n=1 Tax=Candidatus Kuenenia st... 168 9e-41 UniRef50_Q5SM69 DNA topoisomerase n=2 Tax=Thermus thermophilus R... 168 1e-40 UniRef50_C6BUQ9 DNA topoisomerase n=14 Tax=Desulfovibrionales Re... 165 7e-40 UniRef50_Q7MGL0 DNA topoisomerase I-related protein n=77 Tax=Gam... 161 9e-39 UniRef50_A8RBU5 DNA topoisomerase n=9 Tax=Bacteria RepID=A8RBU5_... 158 7e-38 UniRef50_A7NJW2 DNA topoisomerase I n=3 Tax=Bacteria RepID=A7NJW... 156 2e-37 UniRef50_C4L7Y8 DNA topoisomerase type IA zn finger domain prote... 156 3e-37 UniRef50_C6ALU6 DNA topoisomerase I n=3 Tax=Pasteurellaceae RepI... 152 4e-36 UniRef50_C1SMY2 DNA topoisomerase n=1 Tax=Denitrovibrio acetiphi... 152 5e-36 UniRef50_C9RBU3 DNA topoisomerase n=2 Tax=Bacteria RepID=C9RBU3_... 151 7e-36 UniRef50_P46494 Uncharacterized protein HI0656.1 n=27 Tax=Pasteu... 151 1e-35 UniRef50_Q67PC7 DNA topoisomerase n=3 Tax=Bacteria RepID=Q67PC7_... 150 2e-35 UniRef50_Q15ZX8 DNA topoisomerase, type IA, zn finger n=1 Tax=Ps... 149 3e-35 UniRef50_B0BQ81 Conserved DNA topoisomerase I-related protein n=... 149 4e-35 UniRef50_D1C7I9 DNA topoisomerase n=8 Tax=Bacteria RepID=D1C7I9_... 149 4e-35 UniRef50_C9LSJ2 DNA topoisomerase n=3 Tax=Veillonellaceae RepID=... 149 5e-35 UniRef50_D1BMP2 DNA topoisomerase n=6 Tax=Firmicutes RepID=D1BMP... 149 5e-35 UniRef50_Q0HPA2 DNA topoisomerase, type IA, zn finger domain pro... 148 9e-35 UniRef50_C0QYG0 DNA topoisomerase n=2 Tax=Brachyspira RepID=C0QY... 146 2e-34 UniRef50_B2KBN6 DNA topoisomerase n=1 Tax=Elusimicrobium minutum... 146 4e-34 UniRef50_A1SR33 DNA topoisomerase, type IA, zn finger domain pro... 143 2e-33 UniRef50_B9L0B0 DNA topoisomerase n=1 Tax=Thermomicrobium roseum... 142 5e-33 UniRef50_Q4L5V2 DNA topoisomerase 1 n=155 Tax=Firmicutes RepID=T... 142 5e-33 UniRef50_C0W9S2 DNA topoisomerase n=1 Tax=Acidaminococcus sp. D2... 141 1e-32 UniRef50_UPI00016C444E DNA topoisomerase I n=1 Tax=Gemmata obscu... 141 1e-32 UniRef50_A5D2W4 DNA topoisomerase n=4 Tax=Clostridiales RepID=A5... 140 2e-32 UniRef50_Q9KA23 DNA topoisomerase 1 n=107 Tax=Bacteria RepID=TOP... 139 3e-32 UniRef50_B0MRI8 DNA topoisomerase n=1 Tax=Eubacterium siraeum DS... 138 6e-32 UniRef50_Q2FZ32 DNA topoisomerase 1 n=260 Tax=Bacteria RepID=TOP... 138 1e-31 UniRef50_B1GYR4 DNA topoisomerase n=1 Tax=uncultured Termite gro... 136 4e-31 UniRef50_UPI00006DC642 hypothetical protein CdifQ_04001409 n=1 T... 134 9e-31 UniRef50_D1Y390 DNA topoisomerase n=1 Tax=Pyramidobacter piscole... 134 1e-30 UniRef50_D1B572 DNA topoisomerase n=7 Tax=Campylobacterales RepI... 134 1e-30 UniRef50_Q256J1 DNA topoisomerase I-fused to SWI domain n=18 Tax... 133 2e-30 UniRef50_B5YFC7 DNA topoisomerase n=1 Tax=Dictyoglomus thermophi... 133 3e-30 UniRef50_Q59046 DNA topoisomerase 1 n=9 Tax=Methanococcales RepI... 133 3e-30 UniRef50_B9LRP1 DNA topoisomerase n=4 Tax=Halobacteriaceae RepID... 133 3e-30 UniRef50_C9RG81 DNA topoisomerase I n=2 Tax=Methanocaldococcus R... 132 5e-30 UniRef50_A3WII4 Zn-finger domain associated with topoisomerase t... 132 6e-30 UniRef50_UPI0000E0DBED putative DNA topoisomerase; C4 zinc finge... 131 1e-29 UniRef50_B3EPW7 DNA topoisomerase n=12 Tax=Chlorobiaceae RepID=B... 129 3e-29 UniRef50_A9BI47 DNA topoisomerase n=3 Tax=Thermotogaceae RepID=A... 127 2e-28 UniRef50_A8SJ74 DNA topoisomerase n=1 Tax=Parvimonas micra ATCC ... 125 7e-28 UniRef50_C1XZ86 Zn-finger domain-containing protein (Topoisomera... 125 7e-28 UniRef50_Q5V1P3 DNA topoisomerase I n=1 Tax=Haloarcula marismort... 124 9e-28 UniRef50_O83409 DNA topoisomerase 1 n=4 Tax=Treponema RepID=TOP1... 123 3e-27 UniRef50_B8E2F6 DNA topoisomerase n=1 Tax=Dictyoglomus turgidum ... 122 7e-27 UniRef50_A6G953 DNA topoisomerase n=1 Tax=Plesiocystis pacifica ... 121 1e-26 UniRef50_D2LPU9 DNA topoisomerase I n=3 Tax=Aciduliprofundum boo... 121 2e-26 UniRef50_D1B6D6 DNA topoisomerase I n=3 Tax=Synergistaceae RepID... 114 1e-24 UniRef50_C8WG68 DNA topoisomerase type IA central domain protein... 114 1e-24 UniRef50_Q9HM08 DNA topoisomerase 1 n=4 Tax=Thermoplasmatales Re... 113 3e-24 UniRef50_A4P0V4 Putative uncharacterized protein n=1 Tax=Haemoph... 110 2e-23 UniRef50_Q12Y06 DNA topoisomerase n=1 Tax=Methanococcoides burto... 109 3e-23 UniRef50_A8F3N1 DNA topoisomerase n=2 Tax=Thermotogaceae RepID=A... 107 2e-22 UniRef50_A4JTK7 DNA topoisomerase n=2 Tax=Burkholderiales RepID=... 106 3e-22 UniRef50_Q18KP8 DNA topoisomerase n=6 Tax=Halobacteriaceae RepID... 106 4e-22 UniRef50_Q46AN3 DNA topoisomerase n=3 Tax=Methanosarcina RepID=Q... 106 4e-22 UniRef50_A1U3N5 DNA topoisomerase n=6 Tax=Gammaproteobacteria Re... 104 2e-21 UniRef50_A6VXG1 DNA topoisomerase type IA zn finger domain prote... 99 3e-20 UniRef50_Q9JN65 DNA topoisomerase 1 n=2 Tax=Mycoplasma gallisept... 100 4e-20 UniRef50_Q6XZ01 DNA topoisomerase n=2 Tax=Spiroplasma RepID=Q6XZ... 100 4e-20 UniRef50_B1M9R9 DNA topoisomerase I n=4 Tax=root RepID=B1M9R9_METRJ 98 9e-20 UniRef50_C4NUW5 DNA topoisomerase n=12 Tax=Gammaproteobacteria R... 98 1e-19 UniRef50_UPI0001C41D8C DNA topoisomerase I TopA n=1 Tax=Methanob... 97 3e-19 UniRef50_O27661 DNA topoisomerase 1 n=4 Tax=Methanobacteriaceae ... 96 5e-19 UniRef50_C4L6T7 UvrD/REP helicase n=1 Tax=Exiguobacterium sp. AT... 95 1e-18 UniRef50_Q8EVZ3 DNA topoisomerase n=1 Tax=Mycoplasma penetrans R... 95 1e-18 UniRef50_B7I2H2 DNA topoisomerase n=4 Tax=Proteobacteria RepID=B... 93 3e-18 UniRef50_C5B550 DNA topoisomerase n=1 Tax=Methylobacterium extor... 93 3e-18 UniRef50_P78032 DNA topoisomerase 1 n=2 Tax=Mycoplasma RepID=TOP... 92 6e-18 UniRef50_A3M2F6 TraB protein n=2 Tax=Acinetobacter baumannii ATC... 92 7e-18 UniRef50_B1AJN1 DNA topoisomerase I n=15 Tax=Ureaplasma RepID=B1... 92 7e-18 UniRef50_Q2RKN9 DNA topoisomerase I n=1 Tax=Moorella thermoaceti... 91 2e-17 UniRef50_C6BT42 DNA topoisomerase type IA central domain protein... 91 2e-17 UniRef50_B5TTQ4 TraB n=3 Tax=environmental samples RepID=B5TTQ4_... 91 2e-17 UniRef50_A0LAP8 DNA topoisomerase n=13 Tax=cellular organisms Re... 90 5e-17 UniRef50_B1VAJ5 DNA topoisomerase n=6 Tax=Acholeplasmataceae Rep... 88 1e-16 UniRef50_Q2BNY9 Helicase IV n=1 Tax=Neptuniibacter caesariensis ... 88 1e-16 UniRef50_C9Q4L2 DNA topoisomerase n=1 Tax=Vibrio sp. RC341 RepID... 88 1e-16 UniRef50_Q9Z5W4 Topoisomerase n=1 Tax=Pseudomonas aeruginosa Rep... 86 7e-16 UniRef50_D1BLQ5 DNA topoisomerase n=3 Tax=Veillonella RepID=D1BL... 85 1e-15 UniRef50_B9NSL7 UvrD/REP helicase n=1 Tax=Rhodobacteraceae bacte... 85 1e-15 UniRef50_B1VJ64 DNA topoisomerase n=9 Tax=Gammaproteobacteria Re... 85 1e-15 UniRef50_Q9PHK2 DNA topoisomerase I, plasmid n=3 Tax=Gammaproteo... 85 1e-15 UniRef50_D0Z5F5 DNA topoisomerase n=1 Tax=Photobacterium damsela... 85 1e-15 UniRef50_C6A350 DNA topoisomerase I n=3 Tax=Euryarchaeota RepID=... 83 3e-15 UniRef50_A7ZI15 Helicase, UvrD family n=1 Tax=Escherichia coli E... 83 3e-15 UniRef50_A5UN47 Helicase, UvrD/REP family n=1 Tax=Methanobreviba... 82 7e-15 UniRef50_O73954 Endonuclease PI-PfuI n=2 Tax=Euryarchaeota RepID... 82 7e-15 UniRef50_C6P2V7 DNA topoisomerase n=2 Tax=Proteobacteria RepID=C... 82 1e-14 UniRef50_Q5ZHE3 DNA topoisimerase n=9 Tax=root RepID=Q5ZHE3_9BACT 81 2e-14 UniRef50_A4WTK0 UvrD/REP helicase n=8 Tax=Rhodobacterales RepID=... 81 2e-14 UniRef50_C4LDL2 UvrD/REP helicase n=1 Tax=Tolumonas auensis DSM ... 81 2e-14 UniRef50_A3X5L1 Helicase IV n=1 Tax=Roseobacter sp. MED193 RepID... 81 2e-14 UniRef50_D2EGP7 DNA topoisomerase n=1 Tax=Candidatus Parvarchaeu... 80 3e-14 UniRef50_Q481U8 Helicase IV n=1 Tax=Colwellia psychrerythraea 34... 79 6e-14 UniRef50_O28469 DNA topoisomerase 1 n=8 Tax=Euryarchaeota RepID=... 79 7e-14 UniRef50_O58356 DNA topoisomerase 1 n=2 Tax=Pyrococcus RepID=TOP... 78 1e-13 UniRef50_Q1Q866 UvrD/REP helicase n=4 Tax=Gammaproteobacteria Re... 78 1e-13 UniRef50_C2XKX2 DNA topoisomerase n=7 Tax=Bacillus cereus group ... 78 2e-13 UniRef50_C7DGI7 DNA topoisomerase n=1 Tax=Candidatus Micrarchaeu... 78 2e-13 UniRef50_B6YTB3 DNA topoisomerase n=4 Tax=Thermococcus RepID=B6Y... 77 2e-13 UniRef50_Q39UP7 DNA topoisomerase I:Restriction endonuclease n=3... 77 2e-13 UniRef50_P40114 DNA topoisomerase 1 n=47 Tax=Bacillus cereus gro... 77 3e-13 UniRef50_C6AVQ0 UvrD/REP helicase n=2 Tax=Alphaproteobacteria Re... 76 4e-13 UniRef50_Q9KRB2 DNA topoisomerase 1 n=401 Tax=cellular organisms... 76 4e-13 UniRef50_C9RSM0 DNA topoisomerase n=49 Tax=Bacilli RepID=C9RSM0_... 76 4e-13 UniRef50_C9KMQ0 DNA topoisomerase n=5 Tax=Bacteria RepID=C9KMQ0_... 76 6e-13 UniRef50_A3D9J8 UvrD/REP helicase n=11 Tax=Gammaproteobacteria R... 76 6e-13 UniRef50_Q3SMS7 DNA topoisomerase n=8 Tax=Proteobacteria RepID=Q... 75 8e-13 UniRef50_A1WZY5 DNA topoisomerase III n=6 Tax=Campylobacter RepI... 74 2e-12 UniRef50_B1M0P4 DNA topoisomerase n=14 Tax=Alphaproteobacteria R... 74 2e-12 UniRef50_B8EMQ0 DNA topoisomerase n=153 Tax=Alphaproteobacteria ... 73 3e-12 UniRef50_B1L3G6 DNA topoisomerase I n=1 Tax=Candidatus Korarchae... 73 4e-12 UniRef50_UPI0000E88005 helicase IV n=1 Tax=Methylophilales bacte... 73 4e-12 UniRef50_A0R979 DNA topoisomerase 3 n=95 Tax=Bacteria RepID=TOP3... 73 4e-12 UniRef50_Q1V889 DNA topoisomerase I n=1 Tax=Vibrio alginolyticus... 72 1e-11 UniRef50_Q64CK3 DNA topoisomerase n=2 Tax=environmental samples ... 71 1e-11 UniRef50_C0QM75 Multiple domain fusion protein (Zn-finger domain... 71 1e-11 UniRef50_D2RGC8 DNA topoisomerase n=2 Tax=Archaeoglobaceae RepID... 71 1e-11 UniRef50_UPI0001BCB37F UvrD/REP helicase n=1 Tax=Fusobacterium p... 71 1e-11 UniRef50_B0TT01 UvrD/REP helicase n=4 Tax=Shewanella RepID=B0TT0... 71 2e-11 UniRef50_D1AS14 DNA topoisomerase type IA central domain protein... 71 2e-11 UniRef50_Q1AUL7 DNA topoisomerase n=1 Tax=Rubrobacter xylanophil... 70 3e-11 UniRef50_C7NZB3 DNA topoisomerase type IA zn finger domain prote... 70 3e-11 UniRef50_D0D7V2 DNA topoisomerase n=1 Tax=Citreicella sp. SE45 R... 70 3e-11 UniRef50_C6CZS8 DNA topoisomerase n=5 Tax=cellular organisms Rep... 70 4e-11 UniRef50_A7I6L6 DNA topoisomerase n=5 Tax=Methanomicrobiales Rep... 69 5e-11 UniRef50_A8U7S1 DNA topoisomerase n=2 Tax=Lactobacillales RepID=... 69 7e-11 UniRef50_B8FJQ0 DNA topoisomerase type IA zn finger domain prote... 69 7e-11 UniRef50_C6WSV7 DNA topoisomerase n=4 Tax=Proteobacteria RepID=C... 68 1e-10 UniRef50_C1E9E3 DNA topoisomerase n=1 Tax=Micromonas sp. RCC299 ... 68 2e-10 UniRef50_A3DB61 DNA topoisomerase n=1 Tax=Shewanella baltica OS1... 68 2e-10 UniRef50_A4J356 DNA topoisomerase n=3 Tax=Clostridia RepID=A4J35... 68 2e-10 UniRef50_A7VHI2 Putative uncharacterized protein n=1 Tax=Clostri... 68 2e-10 UniRef50_A8II62 DNA topoisomerase (Fragment) n=1 Tax=Chlamydomon... 67 2e-10 UniRef50_Q5WAX6 DNA topoisomerase 3 n=137 Tax=Bacteria RepID=TOP... 67 2e-10 UniRef50_C7RD81 NERD domain protein n=4 Tax=Anaerococcus RepID=C... 67 2e-10 UniRef50_Q1RIM1 DNA topoisomerase 1 n=35 Tax=Rickettsiales RepID... 67 3e-10 UniRef50_B7DM26 NERD domain protein n=1 Tax=Alicyclobacillus aci... 67 3e-10 UniRef50_Q185E5 DNA topoisomerase n=10 Tax=Clostridiales RepID=Q... 67 3e-10 UniRef50_Q5HLZ4 DNA topoisomerase 3 n=9 Tax=Staphylococcus RepID... 67 3e-10 UniRef50_Q4QPE8 DNA topoisomerase n=23 Tax=Proteobacteria RepID=... 67 3e-10 UniRef50_B0P1A6 Putative uncharacterized protein n=1 Tax=Clostri... 66 4e-10 UniRef50_A0RYH5 DNA topoisomerase I n=1 Tax=Cenarchaeum symbiosu... 66 4e-10 UniRef50_C5QM86 DNA topoisomerase n=2 Tax=Staphylococcus RepID=C... 66 4e-10 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 66 4e-10 UniRef50_B6RA74 DNA topoisomerase n=6 Tax=Alphaproteobacteria Re... 66 4e-10 UniRef50_A8SXH4 Putative uncharacterized protein n=1 Tax=Coproco... 66 4e-10 UniRef50_Q28MI5 DNA topoisomerase n=13 Tax=Rhodobacterales RepID... 66 4e-10 UniRef50_C3QAX1 NERD domain-containing protein n=6 Tax=Bacteroid... 66 5e-10 UniRef50_D2J7M2 Putative uncharacterized protein n=2 Tax=Staphyl... 66 5e-10 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 66 6e-10 UniRef50_A6DJX4 DNA topoisomerase n=2 Tax=Bacteria RepID=A6DJX4_... 65 8e-10 UniRef50_C6PBC0 DNA topoisomerase type IA zn finger domain prote... 65 9e-10 UniRef50_UPI00006CC0A9 DNA topoisomerase family protein n=1 Tax=... 65 9e-10 UniRef50_Q702B0 DNA topoisomerase n=1 Tax=uncultured crenarchaeo... 65 1e-09 UniRef50_D2VSX3 Predicted protein n=1 Tax=Naegleria gruberi RepI... 65 1e-09 UniRef50_C5S684 DNA topoisomerase type IA zn finger domain prote... 64 1e-09 UniRef50_B4EXZ8 DNA topoisomerase n=4 Tax=Enterobacteriaceae Rep... 64 2e-09 UniRef50_UPI00016C5644 hypothetical protein GobsU_04089 n=1 Tax=... 64 2e-09 UniRef50_A6EQS9 Hypothetical membrane protein n=1 Tax=unidentifi... 64 2e-09 UniRef50_A5G3C3 DNA topoisomerase, type IA, zn finger domain pro... 64 2e-09 UniRef50_Q0W2I3 DNA topoisomerase I n=2 Tax=Euryarchaeota RepID=... 64 2e-09 UniRef50_A0CUH3 Chromosome undetermined scaffold_28, whole genom... 64 2e-09 UniRef50_UPI0001BC8A6C UvrD-like helicase IV n=1 Tax=Pseudomonas... 64 3e-09 UniRef50_Q1UZD4 DNA topoisomerase n=4 Tax=Bacteria RepID=Q1UZD4_... 63 3e-09 UniRef50_A7IJK3 DNA topoisomerase type IA zn finger domain prote... 63 3e-09 UniRef50_B2UHD2 DNA topoisomerase type IA zn finger domain prote... 63 4e-09 UniRef50_Q8K9P7 DNA topoisomerase 1 n=2 Tax=Gammaproteobacteria ... 63 4e-09 UniRef50_Q18DJ2 DNA topoisomerase I n=2 Tax=Haloquadratum walsby... 63 4e-09 UniRef50_C5DA42 NERD domain protein n=1 Tax=Geobacillus sp. WCH7... 63 4e-09 UniRef50_D0NS69 Calpain-like protein n=2 Tax=Phytophthora infest... 63 5e-09 UniRef50_A7HZT1 DNA topoisomerase 3 (DNA topoisomerase III) n=3 ... 63 5e-09 UniRef50_C6V581 DNA topoisomerase n=2 Tax=Neorickettsia RepID=C6... 63 5e-09 UniRef50_C6XEP4 DNA topoisomerase I n=1 Tax=Methylovorus sp. SIP... 62 7e-09 UniRef50_Q2B8U1 Putative uncharacterized protein n=1 Tax=Bacillu... 62 8e-09 UniRef50_UPI000174264A helicase, UvrD/REP family protein n=2 Tax... 62 8e-09 UniRef50_D1CHV6 DNA topoisomerase type IA zn finger domain prote... 62 9e-09 UniRef50_Q4L0S6 TraE-like protein n=3 Tax=Gammaproteobacteria Re... 62 9e-09 UniRef50_B9TJX8 Putative uncharacterized protein n=1 Tax=Ricinus... 62 1e-08 UniRef50_Q6YRP6 Slr6108 protein n=1 Tax=Synechocystis sp. PCC 68... 62 1e-08 UniRef50_A7JLN3 Predicted protein n=3 Tax=Francisella RepID=A7JL... 62 1e-08 UniRef50_A4RYV6 DNA topoisomerase (Fragment) n=5 Tax=cellular or... 61 1e-08 UniRef50_B9XT21 Restriction endonuclease n=1 Tax=bacterium Ellin... 61 2e-08 UniRef50_Q3BT95 DNA topoisomerase n=14 Tax=Gammaproteobacteria R... 61 2e-08 UniRef50_C5U8C5 DNA topoisomerase (Fragment) n=1 Tax=Methanocald... 61 2e-08 UniRef50_UPI00017C3C60 PREDICTED: hypothetical protein n=1 Tax=B... 61 2e-08 UniRef50_Q4SVN5 DNA topoisomerase (Fragment) n=3 Tax=Tetraodonti... 61 2e-08 UniRef50_A5CF60 DNA topoisomerase n=2 Tax=Orientia tsutsugamushi... 61 2e-08 UniRef50_C5V7F2 Restriction endonuclease n=1 Tax=Gallionella fer... 61 2e-08 UniRef50_A4HPI6 DNA topoisomerase n=9 Tax=Trypanosomatidae RepID... 60 3e-08 UniRef50_B3PMD8 DNA topoisomerase I n=3 Tax=Mycoplasma RepID=B3P... 60 3e-08 UniRef50_C5A9D2 DNA topoisomerase n=1 Tax=Burkholderia glumae BG... 60 3e-08 UniRef50_C1MSJ2 DNA topoisomerase n=1 Tax=Micromonas pusilla CCM... 60 4e-08 UniRef50_A1SXM8 DNA-binding NERD domain-containing protein n=18 ... 60 4e-08 UniRef50_Q9NG98 DNA topoisomerase 3-alpha n=10 Tax=Eukaryota Rep... 60 4e-08 UniRef50_C7NA27 DNA topoisomerase n=20 Tax=Fusobacteriaceae RepI... 59 5e-08 UniRef50_C0ZFC8 Putative uncharacterized protein n=2 Tax=Breviba... 59 5e-08 UniRef50_C4V616 DNA topoisomerase n=1 Tax=Selenomonas flueggei A... 59 5e-08 UniRef50_B0G7K1 Putative uncharacterized protein n=1 Tax=Dorea f... 59 6e-08 UniRef50_A3WL27 Probable transmembrane protein n=1 Tax=Idiomarin... 59 6e-08 UniRef50_Q58078 Uncharacterized protein MJ0664 n=4 Tax=Methanoca... 59 7e-08 UniRef50_B5EPF0 DNA topoisomerase type IA zn finger domain prote... 59 7e-08 UniRef50_D0UIR3 TraE-like protein n=1 Tax=Aggregatibacter actino... 59 8e-08 UniRef50_C5Z4V5 DNA topoisomerase (Fragment) n=12 Tax=cellular o... 59 8e-08 UniRef50_C4ZF87 DNA topoisomerase I n=1 Tax=Eubacterium rectale ... 59 8e-08 UniRef50_Q9X3X7 DNA topoisomerase 1 n=7 Tax=cellular organisms R... 59 9e-08 UniRef50_A5FDL0 NERD domain protein n=1 Tax=Flavobacterium johns... 59 9e-08 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 59 9e-08 UniRef50_C3SA84 DNA topoisomerase n=1 Tax=Brachypodium distachyo... 59 9e-08 UniRef50_A5INJ9 Adenine-specific DNA methylase containing a Zn-r... 58 1e-07 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 58 1e-07 UniRef50_Q3IU69 Homolog to DNA topoisomerase I n=2 Tax=Halobacte... 58 1e-07 UniRef50_C9LWM4 DNA topoisomerase n=1 Tax=Selenomonas sputigena ... 58 1e-07 UniRef50_A3EW25 DNA topoisomerase n=3 Tax=Leptospirillum RepID=A... 58 1e-07 UniRef50_Q1NX61 DNA topoisomerase I:Restriction endonuclease n=2... 58 1e-07 UniRef50_D0GKB0 DNA topoisomerase n=1 Tax=Leptotrichia goodfello... 58 1e-07 UniRef50_A6BK25 DNA topoisomerase n=12 Tax=Firmicutes RepID=A6BK... 58 1e-07 UniRef50_Q4A5N2 DNA topoisomerase n=2 Tax=Mycoplasma RepID=Q4A5N... 58 1e-07 UniRef50_A5FHK0 DNA topoisomerase III n=25 Tax=cellular organism... 58 1e-07 UniRef50_A1TJM5 DNA topoisomerase n=55 Tax=Proteobacteria RepID=... 58 2e-07 UniRef50_A4JFS2 DNA topoisomerase III n=4 Tax=Proteobacteria Rep... 58 2e-07 UniRef50_A1VWJ4 UvrD/REP helicase n=1 Tax=Polaromonas naphthalen... 58 2e-07 UniRef50_Q8L288 DNA restriction n=1 Tax=Proteus vulgaris RepID=Q... 58 2e-07 Sequences not found previously or not previously below threshold: >UniRef50_Q3A7H8 DNA topoisomerase n=13 Tax=Bacteria RepID=Q3A7H8_PELCD Length = 841 Score = 224 bits (570), Expect = 1e-57, Method: Composition-based stats. Identities = 73/178 (41%), Positives = 110/178 (61%), Gaps = 3/178 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 ++K + T + + CP+CG LVI+ G+ G FL CS +P C Y PL + V+ Sbjct: 577 ISKQDVTTEKTDRICPECGKPLVIKLGRSGRFLACSGFPDCRYTEPL--AGQEREEPVMS 634 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 Q C CGA ++++QGR+G F+ C YPEC++ + + KP ITCPQC G L++++SR Sbjct: 635 DQTCEKCGAPMLIKQGRYGKFLACSAYPECKNIQPLVKPKALGITCPQCGEGELMEKKSR 694 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCGKPV 177 YGK F+SC+RYP+C++A+ PI CP+C +PL++EK T + G C + C V Sbjct: 695 YGKIFYSCNRYPKCKYALWDLPIEEPCPKCKFPLVVEKTTKRQGTFRKCPQEDCDWTV 752 Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%) Query: 80 MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 FI + E + ++ ++T CP+C LV + R G F +C +P+C++ Sbjct: 565 PFISRLKEKETQISKQDVTTEKTDRICPECGKP-LVIKLGRSG-RFLACSGFPDCRYTEP 622 Query: 140 F------KPI--AGECPECHYPLLIEKKTAQGVKHFCA-SKQCGKP 176 +P+ C +C P+LI K+ G C+ +C Sbjct: 623 LAGQEREEPVMSDQTCEKCGAPMLI-KQGRYGKFLACSAYPECKNI 667 >UniRef50_B5EJ79 DNA topoisomerase n=61 Tax=Proteobacteria RepID=B5EJ79_ACIF5 Length = 851 Score = 216 bits (549), Expect = 3e-55, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 4/178 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 ++++ + E+CP+CG L +R G+HG F+ CS YP C+Y RP+ Sbjct: 577 VSRAEATSEALEEACPQCGKPLFLRLGRHGRFVACSGYPECNYTRPVDG---PREPAEPV 633 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 G+ CP CG LV + GR+G FI C YPEC+H E + +P + +TCPQC G LV++RSR Sbjct: 634 GRDCPDCGKPLVYKTGRYGRFISCSGYPECKHIEPLTQPKSSGVTCPQCGEGELVEKRSR 693 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQCGKPV 177 YGK F+SC+ YP+C +A+ P+A CP C +P++IEK + G + C +C Sbjct: 694 YGKVFYSCNTYPKCTYAVWGPPVARPCPRCGWPIMIEKSGKRLGEQLACPQSECAFHF 751 >UniRef50_A0LDV2 DNA topoisomerase I n=7 Tax=Proteobacteria RepID=A0LDV2_MAGSM Length = 783 Score = 205 bits (520), Expect = 7e-52, Method: Composition-based stats. Identities = 61/181 (33%), Positives = 102/181 (56%), Gaps = 2/181 (1%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL-E 60 +K + T + +E CPKCGA L I+ G+ G F C+ YP C + PL + + Sbjct: 595 SKEEVTTEQIDEPCPKCGAPLSIKLGRFGKFKACTGYPECKHTEPLNKEEEVSRPEPELT 654 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 C CG +++++GR+G + GC PEC++ + ++KP +T + CP C G ++++SR Sbjct: 655 DIPCDKCGKPMLIKEGRYGKYYGCSGAPECKNNQPLNKPRDTGVACPSCGQGTFLEKKSR 714 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPVSA 179 GK F+SC YP+C+ A+ +P+ CP+C P + +K T +G +H C ++ C Sbjct: 715 RGKIFYSCSNYPKCKQALWDEPLEIPCPKCQAPFVTKKVTKTRGTEHICVAEGCDYKEVV 774 Query: 180 E 180 E Sbjct: 775 E 775 Score = 76.0 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 15/108 (13%) Query: 80 MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 FI I + ++ ++ CP+C L + R+GK F +C YPEC+ Sbjct: 582 PFIQQITLKDETTSKEEVTTEQIDEPCPKCGAP-LSIKLGRFGK-FKACTGYPECKHTEP 639 Query: 140 FKPIAG-----------ECPECHYPLLIEKKTAQGVKHFCAS-KQCGK 175 C +C P+LI K+ G + C+ +C Sbjct: 640 LNKEEEVSRPEPELTDIPCDKCGKPMLI-KEGRYGKYYGCSGAPECKN 686 >UniRef50_Q01N68 DNA topoisomerase n=7 Tax=Bacteria RepID=Q01N68_SOLUE Length = 934 Score = 204 bits (518), Expect = 1e-51, Method: Composition-based stats. Identities = 67/179 (37%), Positives = 95/179 (53%), Gaps = 7/179 (3%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + L ESC CG +V++ G+ G F CS+YP C R + + V Sbjct: 755 LEGADLSEQGEEESCENCGRPMVLKKGRFGTFFACSEYPDCKTTRQIGGT---QKKDVPL 811 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 + CP C NLV++ GRFG F C NYP C++ K + CP+C G +++RRS+ Sbjct: 812 DEKCPQCDNNLVMKYGRFGEFTACSNYPTCKY----VKQKTIGVKCPECSEGDIIERRSK 867 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 GKTF+ C+RYP+C F KP+A +CPEC P +IEK G C + +C V A Sbjct: 868 KGKTFYGCNRYPDCTFVAWGKPVAEKCPECGSPYMIEKFLKSGAFWQCPNAECKHQVEA 926 Score = 64.5 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 52/224 (23%), Gaps = 49/224 (21%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACD--------YVRPLKSSAD 52 M + C KCG LVI+ GKHG F+ C+ YP Sbjct: 576 MTDIKRMEKPTDLICEKCGRPLVIKWGKHGSFIACTGYPDFSSKSIESDLEKVQKDIEVR 635 Query: 53 GHIVKVLEGQVCPACGANLVLRQ---GRFGMFIGCINYPECEHTELIDKPDETAITCPQC 109 A R G+ G F+ + P+ + Sbjct: 636 RQRALKKIELSLEKLRAKYPDRTITWGQDGEFLVIPSAPKIPKPMDAALKKLEKEIAVKR 695 Query: 110 RT--GHLVQRRSRYGKTFHSCDRYPE--------------------CQFAINFKP----- 142 G + R + + + + C + Sbjct: 696 SEDRGKIEARLEKLQARYPQMKGFYDLDLRDTAEGVALTVRRKEEFCTYTRELTVDLPDL 755 Query: 143 ---------IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 C C P+++ KK G C+ C Sbjct: 756 EGADLSEQGEEESCENCGRPMVL-KKGRFGTFFACSEYPDCKTT 798 >UniRef50_Q2LT40 DNA topoisomerase n=2 Tax=Bacteria RepID=Q2LT40_SYNAS Length = 769 Score = 199 bits (506), Expect = 3e-50, Method: Composition-based stats. Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 9/181 (4%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-- 58 M + C KC + +VI+ GK+G F+ CS YPAC R ++ Sbjct: 589 MKNIKREETPTDLICEKCQSPMVIKWGKNGKFIACSNYPACKNTRNIEQGEGVERSAKGG 648 Query: 59 -LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQ 116 + VCP CG N++++ GRFG F+GC YP+C+HT I + CPQ G +++ Sbjct: 649 EMTDTVCPKCGKNMLIKHGRFGRFLGCSGYPDCKHTMPIS----LGVKCPQEGCDGEIIE 704 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGK 175 +R++ G++F C YP C FA+ KPI CP+C+ P L+EK + +G C +K CG Sbjct: 705 KRTKKGRSFFGCSNYPNCTFAVWDKPIPEPCPQCNSPFLVEKYSRTEGSYKACPNKDCGY 764 Query: 176 P 176 Sbjct: 765 R 765 Score = 39.4 bits (90), Expect = 0.053, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%) Query: 142 PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 P C +C P++I K G C++ C + E Sbjct: 598 PTDLICEKCQSPMVI-KWGKNGKFIACSNYPACKNTRNIE 636 >UniRef50_A8ZW15 DNA topoisomerase n=3 Tax=Desulfobacteraceae RepID=A8ZW15_DESOH Length = 758 Score = 190 bits (483), Expect = 1e-47, Method: Composition-based stats. Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 11/187 (5%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + SCP+CG EL I+ GK+GPFL CS YP C + R + G + V Sbjct: 569 MRSVKGVGMDTGLSCPECGKELKIKLGKNGPFLACSGYPDCKFSRNYARTDKGTVEPVEP 628 Query: 61 GQV------CPACGANLVLRQGRFGMFIGCINYPECEHTELID---KPDETAITCPQCR- 110 C CG+ +V++QGR+G F+ C YP+C+ T+ ++ + CP+ Sbjct: 629 DLTVAEGKSCEKCGSPMVVKQGRYGDFLACSAYPDCKSTQSLNSGANAAPIGVKCPEPGC 688 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCA 169 G +V+++S+ GK F+ C R+P+C FA KP+ CP+C P ++EK T + G CA Sbjct: 689 NGDIVEKKSKRGKVFYGCSRFPKCTFASWDKPVDMACPDCGAPFVVEKTTKKEGTVLTCA 748 Query: 170 SKQCGKP 176 S+ CG Sbjct: 749 SEGCGFR 755 Score = 73.7 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 20/118 (16%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 +G F I + + +T ++CP+C ++ + F +C YP+C+F+ Sbjct: 555 YGPFSQRIEAAKDRMRSVKGVGMDTGLSCPECGKE--LKIKLGKNGPFLACSGYPDCKFS 612 Query: 138 INF--------KPIA--------GECPECHYPLLIEKKTAQGVKHFCA-SKQCGKPVS 178 N+ +P+ C +C P+++ K+ G C+ C S Sbjct: 613 RNYARTDKGTVEPVEPDLTVAEGKSCEKCGSPMVV-KQGRYGDFLACSAYPDCKSTQS 669 >UniRef50_Q1ILA9 DNA topoisomerase n=9 Tax=Bacteria RepID=Q1ILA9_ACIBL Length = 853 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 90/180 (50%), Gaps = 8/180 (4%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + E C CG +V++ G+ G F+ C+ YP C R L + I V Sbjct: 642 LDTADVQETEQEEYCENCGRGMVLKRGRFGQFMACTGYPECKTTRRLDQA--KKIPDVPL 699 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 + CP C LVLR GRFG F+ C YPEC+ K + + CPQC+ G +V++++R Sbjct: 700 DEKCPECTRPLVLRHGRFGEFVSCSGYPECKWI----KQNFVGVKCPQCKEGEIVEKKAR 755 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 G F+ C RYP+C F KP+A CP+C ++EKK G C + S E Sbjct: 756 RGNFFYGCARYPKCDFTSANKPVAQPCPKCGSEYVLEKKLKSGTYLTCPNN--KATASEE 813 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 23/119 (19%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE---- 133 + F ++Y + + T C +C + LV + ++G F++C Y + Sbjct: 570 YDKFETNLDYAQKHMENIKRMEKPTDEKCERCGSP-LVIKWGKHGS-FYACSSYDKKDPN 627 Query: 134 -CQFAINFKP--------------IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 C F C C +++ K+ G C +C Sbjct: 628 SCTFTKENPIDLPDLDTADVQETEQEEYCENCGRGMVL-KRGRFGQFMACTGYPECKTT 685 >UniRef50_D0LR99 DNA topoisomerase n=169 Tax=cellular organisms RepID=D0LR99_HALO1 Length = 894 Score = 185 bits (470), Expect = 5e-46, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 93/186 (50%), Gaps = 14/186 (7%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI---VK 57 M + + C KCGA +VI+ G++G FL C YP C + + + DG + Sbjct: 710 MRDVKREEIPTDHVCEKCGAPMVIKWGRNGSFLACQAYPDCRNTKEINRNPDGSFEIVPE 769 Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ--CRTGHLV 115 + C CGA +V+++GRFG F+ C YPEC++T+ I + CP+ C G L Sbjct: 770 QTTDETCSECGAPMVVKRGRFGAFLACSTYPECKNTQPIS----LGVDCPKDGCG-GFLT 824 Query: 116 QRRSRYGKTFHSCDRYPE--CQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 ++RSR GK F+ C Y + C F +PIA CP C L++K+T +G C S C Sbjct: 825 EKRSRRGKPFYGCSNYSKTGCDFVTWDRPIAEACPVCEASFLVKKETRRGTTVRCLS--C 882 Query: 174 GKPVSA 179 Sbjct: 883 DYKTEQ 888 Score = 72.2 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 17/118 (14%) Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP 132 L G + F G I + + ++ + T C +C +V + R G F +C YP Sbjct: 691 LLGGFYEPFRGNIEHAKENMRDVKREEIPTDHVCEKCGAP-MVIKWGRNGS-FLACQAYP 748 Query: 133 ECQFA-------------INFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 +C+ + + C EC P+++ K+ G C++ +C Sbjct: 749 DCRNTKEINRNPDGSFEIVPEQTTDETCSECGAPMVV-KRGRFGAFLACSTYPECKNT 805 >UniRef50_B5YKX8 DNA topoisomerase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKX8_THEYD Length = 777 Score = 184 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 65/180 (36%), Positives = 102/180 (56%), Gaps = 8/180 (4%) Query: 1 MAKSALFTV-RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL 59 ++K + + C KCG ++VIR K PFL CS YP C R L ++ +G K L Sbjct: 578 ISKVIKPKEIKTSFKCEKCGKDMVIRWSKGVPFLACSGYPECKNTRSLNNNENGSTKKTL 637 Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 + CP CGA LV+R G+ G FI C NYP+C+ T+ I + CPQC G ++++++ Sbjct: 638 -DKKCPQCGAQLVVRNGKRGEFIACSNYPKCKFTQSITAQ----VKCPQCG-GDILKKQT 691 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGV-KHFCASKQCGKPVS 178 + G+TF +C YP+C+F ++ +P+ ECP+C +++KK G C +K C + Sbjct: 692 KKGRTFWACANYPKCKFTLSNEPVPAECPKCKSSYMLKKKDRNGTEFLICHNKACKGKIE 751 Score = 119 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 10/140 (7%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA---- 103 K S ++ C CG ++V+R + F+ C YPEC++T ++ + + Sbjct: 577 KISKVIKPKEIKTSFKCEKCGKDMVIRWSKGVPFLACSGYPECKNTRSLNNNENGSTKKT 636 Query: 104 --ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 CPQC LV R + G+ F +C YP+C+F + +CP+C +L ++ Sbjct: 637 LDKKCPQCG-AQLVVRNGKRGE-FIACSNYPKCKFTQSIT-AQVKCPQCGGDILKKQTKK 693 Query: 162 QGVKHFCAS-KQCGKPVSAE 180 CA+ +C +S E Sbjct: 694 GRTFWACANYPKCKFTLSNE 713 >UniRef50_B9L7D9 DNA topoisomerase n=1 Tax=Nautilia profundicola AmH RepID=B9L7D9_NAUPA Length = 728 Score = 183 bits (463), Expect = 3e-45, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 99/178 (55%), Gaps = 10/178 (5%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S +E+CP CG+ LVIR G+ G F+ CS YP C Y RPL+ S + Sbjct: 559 SQKIAKPIDETCPLCGSPLVIRKGRFGEFIACSSYPKCKYTRPLEES----KEEKKTDVK 614 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTEL-IDKPDETAITCPQCRTGHLVQRRSRYG 122 C CGA++V+++G+ G F+ C NYP+C++T+ + CP+C G +V+R+SR G Sbjct: 615 CDKCGADMVVKKGKSGEFLACSNYPKCKNTKPLNAPEVLDDVKCPECG-GDIVKRKSRRG 673 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 + F+ C YP+C F ++P+ +CPEC Y L+ E+ + + C +C A+ Sbjct: 674 E-FYGCANYPKCNFISKYRPVNKKCPECGY-LMAERTYRKKDVYECI--KCKHREEAK 727 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 14/140 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 + + + + C KCGA++V++ GK G FL CS YP C +P + +VL+ Sbjct: 603 EESKEEKKTDVKCDKCGADMVVKKGKSGEFLACSNYPKCKNTKP------LNAPEVLDDV 656 Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 CP CG ++V R+ R G F GC NYP+C + CP+C G+L+ R+ Sbjct: 657 KCPECGGDIVKRKSRRGEFYGCANYPKCNFISKYRPVN---KKCPEC--GYLMAERTYRK 711 Query: 123 KTFHSCDRYPECQFAINFKP 142 K + C +C+ K Sbjct: 712 KDVYECI---KCKHREEAKK 728 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 11/139 (7%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL---IDKPDETAI 104 + + CP CG+ LV+R+GRFG FI C +YP+C++T + +T + Sbjct: 554 YKEIPSQKIAKPIDETCPLCGSPLVIRKGRFGEFIACSSYPKCKYTRPLEESKEEKKTDV 613 Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----IAGECPECHYPLLIEKKT 160 C +C +V++ F +C YP+C+ +CPEC ++ ++K+ Sbjct: 614 KCDKCGADMVVKKGKS--GEFLACSNYPKCKNTKPLNAPEVLDDVKCPECGGDIV-KRKS 670 Query: 161 AQGVKHFCAS-KQCGKPVS 178 +G + CA+ +C Sbjct: 671 RRGEFYGCANYPKCNFISK 689 Score = 46.4 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%) Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 Y E KPI CP C PL+I K G C+S +C E Sbjct: 553 GYKEIPSQKIAKPIDETCPLCGSPLVIRK-GRFGEFIACSSYPKCKYTRPLE 603 >UniRef50_D1U7W1 DNA topoisomerase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U7W1_9DELT Length = 821 Score = 181 bits (460), Expect = 6e-45, Method: Composition-based stats. Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 12/185 (6%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 C KCG + I+ + G FLGC+ YP C + + +G I + ++ Sbjct: 622 ERETPEETGVECEKCGKPMAIKQSRRGEFLGCTGYPDCKNIVNFQRDENGAISVIESEKL 681 Query: 64 -----CPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQ 116 CP CG L+L++ R G FI C NYP+C + T + CP + G LV+ Sbjct: 682 QVVGSCPDCGGELLLKKARTGSRFIACSNYPDCTYAAPFS----TGVPCPVEGCAGELVE 737 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGK 175 + SR GK F SC YP+C +A+ P+ CP+C +P+L K T +G C K CG Sbjct: 738 KSSRRGKIFFSCSAYPKCDYAVWNWPVNEPCPKCGHPILTRKTTKDKGEHLACPQKGCGY 797 Query: 176 PVSAE 180 + Sbjct: 798 TREPD 802 Score = 64.1 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 20/106 (18%) Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-------- 140 E TE+ ET I C C ++ + G+ F C +P C+ NF Sbjct: 561 EKARTEMARSQQETDIVCENCGKPMSIKF-GKTGE-FLGCTGFPTCRTIKNFTRDENGAI 618 Query: 141 --------KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPV 177 + EC +C P+ I K++ +G C C V Sbjct: 619 RIVERETPEETGVECEKCGKPMAI-KQSRRGEFLGCTGYPDCKNIV 663 >UniRef50_C6HWV0 DNA topoisomerase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HWV0_9BACT Length = 865 Score = 181 bits (459), Expect = 9e-45, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 86/180 (47%), Gaps = 10/180 (5%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG-- 61 + E C CG +++R G+ G FL CS YPAC RP L Sbjct: 684 PEVLPEAPGEVCQTCGKPMIVRKGRFGTFLACSDYPACKTTRPWPPKGQPSPPVPLPADL 743 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC--PQCRTGHLVQRRS 119 CPACG +V++ GRFG F+ C NYP C+ T + T I C P C G +V RR Sbjct: 744 PPCPACGGAMVVKSGRFGSFLSCANYPACKTTRPLP----TGIRCTRPGCD-GEIVPRRG 798 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 + G F+ C RYPEC +P+A CP C + L+EKKT ++ C K CG Sbjct: 799 KRG-VFYGCSRYPECDRTYPGRPVARPCPSCGHAFLMEKKTGGKLRLVCPEKDCGYEAPE 857 >UniRef50_B0VJB5 DNA topoisomerase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJB5_9BACT Length = 739 Score = 181 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 11/173 (6%) Query: 11 NNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPL---KSSADGHIVKVLEGQVCPA 66 C C ++I+ K G FL CS++P C + + V + CP Sbjct: 573 TGIVCDVCKQGTMLIKHSKRGDFLSCSRFPQCKNTKNFTRDEDGNIKIFVPTPLNENCPQ 632 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 CG+ L+LR G++G FI C NYP+C++ I CP+C G L R+S+ G+TF+ Sbjct: 633 CGSPLMLRTGKYGEFIACSNYPKCKYARPKTL----GIKCPECGIGELTARKSKKGRTFY 688 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPVS 178 SC+RYPEC++ N KP+ CP+C P ++EK + +G C + C + Sbjct: 689 SCNRYPECKYITNDKPLPISCPKCGNPYIVEKYSREKGKIKICPN--CKTEME 739 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 19/135 (14%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 NE+CP+CG+ L++R+GK+G F+ CS YP C Y RP G Sbjct: 619 KIFVPTPLNENCPQCGSPLMLRTGKYGEFIACSNYPKCKYARPK-----------TLGIK 667 Query: 64 CPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP CG L R+ + G F C YPEC++ I+CP+C ++V++ SR Sbjct: 668 CPECGIGELTARKSKKGRTFYSCNRYPECKYITNDKPLP---ISCPKCGNPYIVEKYSRE 724 Query: 122 GKTFHSCDRYPECQF 136 C P C+ Sbjct: 725 KGKIKIC---PNCKT 736 >UniRef50_C9LM02 DNA topoisomerase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM02_9FIRM Length = 799 Score = 178 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 ++ C KCGA ++++ ++G +L C +P+C ++P + + + Sbjct: 599 KEENQEVSDVICEKCGAHMIVKMSRYGKYLACPNFPSCKNIKPYHTG---EEKEEISDVD 655 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 C CGA +V RQG +G ++ C PEC +T I CP+C GHLV+RRS+ G+ Sbjct: 656 CDKCGAKMVYRQGPYGRYLKC---PECGQ--NKAIVIDTGIECPKCHEGHLVKRRSKRGR 710 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 F+ C RYP C A+ +P+ C C + + + + + C++ +C Sbjct: 711 YFYGCSRYPACDMAVWDEPVNEFCSVCGAIKVKKVRKNKEEELICSNPEC 760 Score = 62.9 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 14/94 (14%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVL 59 ++ + CPKC LV R K G F GCS+YPACD + Sbjct: 680 GQNKAIVIDTGIECPKCHEGHLVKRRSKRGRYFYGCSRYPACD----------MAVWDEP 729 Query: 60 EGQVCPACGANLVLRQGR-FGMFIGCINYPECEH 92 + C CGA V + + + C N PEC Sbjct: 730 VNEFCSVCGAIKVKKVRKNKEEELICSN-PECTT 762 >UniRef50_A6DDI1 DNA topoisomerase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDI1_9PROT Length = 725 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 11/176 (6%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S E CP+CG LVIR G+ G F+ CS +P C Y RP++ + Sbjct: 559 SQKIAKPTGELCPECGNPLVIRKGRFGEFIACSNFPKCKYTRPIEEK-----EEKKVDVK 613 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE-TAITCPQCRTGHLVQRRSRYG 122 C CGA++V+++G+ G F+ C NYPEC++T+ ++ P+ + CP+C G +++R+SR G Sbjct: 614 CDKCGADMVIKRGKRGEFLACSNYPECKNTKPLNPPEVLEDVKCPECG-GDIIKRKSRRG 672 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 + F+ C YP+C F ++P+ +C EC Y ++ ++ C +C Sbjct: 673 E-FYGCGNYPKCNFISKYRPVNEKCDECGY-MMAKRTYRNKEVLECI--KCKARKE 724 Score = 121 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 + + G++CP CG LV+R+GRFG FI C N+P+C++T I++ +E Sbjct: 548 KLIEKGYEEIPSQKIAKPTGELCPECGNPLVIRKGRFGEFIACSNFPKCKYTRPIEEKEE 607 Query: 102 T--AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----IAGECPECHYPLL 155 + C +C +++R R F +C YPEC+ P +CPEC ++ Sbjct: 608 KKVDVKCDKCGADMVIKRGKR--GEFLACSNYPECKNTKPLNPPEVLEDVKCPECGGDII 665 Query: 156 IEKKTAQGVKHFCAS-KQCGKPVS 178 ++K+ +G + C + +C Sbjct: 666 -KRKSRRGEFYGCGNYPKCNFISK 688 >UniRef50_A3EPL6 DNA topoisomerase n=2 Tax=Leptospirillum sp. Group II RepID=A3EPL6_9BACT Length = 850 Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 62/173 (35%), Positives = 87/173 (50%), Gaps = 9/173 (5%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV--KVLEGQV 63 + E C C A +VI+ G+ G FL CS+YP C RP A+ + E V Sbjct: 679 EEALPEGEVCHVCQAPMVIKKGRFGTFLACSRYPECKTTRPWPPKAEASLPAVSPAEAPV 738 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQRRSRYG 122 CP C + +V ++GRFG F C YPEC+ T + T CP + G LV RR + G Sbjct: 739 CPECSSPMVQKRGRFGSFWACSRYPECKGTRPLA----TGHPCPVKGCKGELVPRRGKRG 794 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 TF+ C RYPEC F +N +P+ CP+C +P + + V C ++ C Sbjct: 795 -TFYGCSRYPECTFLLNGEPVRDPCPDCQFPY-RVRTGKKSVDLVCPNEACSH 845 Score = 158 bits (398), Expect = 9e-38, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 17/194 (8%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV-- 58 M V + SCP C A + + GK+G +L CS+YP C R + Sbjct: 622 MTNLKKLEVPTDVSCPVCQAPMNRKWGKNGSYLSCSRYPECKTTRNFTEENGQIRIVEEA 681 Query: 59 -LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL---------IDKPDETAITCPQ 108 EG+VC C A +V+++GRFG F+ C YPEC+ T A CP+ Sbjct: 682 LPEGEVCHVCQAPMVIKKGRFGTFLACSRYPECKTTRPWPPKAEASLPAVSPAEAPVCPE 741 Query: 109 CRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECH-YPLLIEKKTAQGVKHF 167 C + +VQ+R R+G F +C RYPEC+ CP L+ ++ +G + Sbjct: 742 CSSP-MVQKRGRFGS-FWACSRYPECKGTRPL-ATGHPCPVKGCKGELVPRRGKRGTFYG 798 Query: 168 CAS-KQCGKPVSAE 180 C+ +C ++ E Sbjct: 799 CSRYPECTFLLNGE 812 >UniRef50_UPI0001698F80 DNA topoisomerase I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698F80 Length = 424 Score = 175 bits (444), Expect = 5e-43, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 1/149 (0%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP-LKSSADGHIVKVL 59 + +S + +E CPKCG +L IR G+HG F+GC+ YP CDY R ++ +V+ Sbjct: 217 VKRSDVTHEALDEKCPKCGDQLSIRLGRHGRFIGCNNYPKCDYTRDLNADKSEQDEPQVV 276 Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 EG+ CP CG+ LV+++GR+G FIGC YP C H E ++KP +T ++CP+C G L++R+S Sbjct: 277 EGRSCPECGSPLVIKRGRYGKFIGCSGYPNCRHIEPLEKPQDTGVSCPKCGNGTLLKRKS 336 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECP 148 + GK F+SC YP+C +A+ +P+ G P Sbjct: 337 KRGKIFYSCSTYPDCDYAVWNEPVDGPWP 365 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 15/137 (10%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL--------IDKPDETAITCPQ 108 + CP CG L +R GR G FIGC NYP+C++T + +CP+ Sbjct: 224 HEALDEKCPKCGDQLSIRLGRHGRFIGCNNYPKCDYTRDLNADKSEQDEPQVVEGRSCPE 283 Query: 109 CRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP---IAGECPECHYPLLIEKKTAQGV- 164 C + LV +R RYGK F C YP C+ + CP+C L+++K+ +G Sbjct: 284 CGSP-LVIKRGRYGK-FIGCSGYPNCRHIEPLEKPQDTGVSCPKCGNGTLLKRKSKRGKI 341 Query: 165 KHFCAS-KQCGKPVSAE 180 + C++ C V E Sbjct: 342 FYSCSTYPDCDYAVWNE 358 Score = 73.3 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 15/113 (13%) Query: 80 MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI- 138 F I+Y + + CP+C G + R F C+ YP+C + Sbjct: 205 PFKERIDYTQENVKRSDVTHEALDEKCPKC--GDQLSIRLGRHGRFIGCNNYPKCDYTRD 262 Query: 139 ----------NFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 CPEC PL+I K+ G C+ C E Sbjct: 263 LNADKSEQDEPQVVEGRSCPECGSPLVI-KRGRYGKFIGCSGYPNCRHIEPLE 314 Score = 52.1 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 3 KSALFTVRNNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIV 56 + SCPKCG L+ R K G F CS YP CDY + Sbjct: 311 EPLEKPQDTGVSCPKCGNGTLLKRKSKRGKIFYSCSTYPDCDYAVWNEPVDGPWPP 366 >UniRef50_P45771 Uncharacterized protein yrdD n=427 Tax=Gammaproteobacteria RepID=YRDD_ECOLI Length = 180 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 180/180 (100%), Positives = 180/180 (100%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE Sbjct: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR Sbjct: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE Sbjct: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 >UniRef50_C1ABE5 DNA topoisomerase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE5_GEMAT Length = 816 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 9/181 (4%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVL 59 + ++ + E CP CG +LV + G GPF+ C +P C Y RP+K L Sbjct: 632 IGEAYDLSALETERCPDCGGKLVAKGGFFGPFVACENHPKACKYTRPIKGE---KKPAEL 688 Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 +C CGA +V+R GR G F+GC +P+C T T + CP+ +R Sbjct: 689 TNYMCQECGAPMVIRHGRSGDFLGCSKFPKCRGTRS----MPTGVKCPKDGGEIAERRSK 744 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPVS 178 + GK F+ C+ YP C F + KP+A CPEC Y K +G C V+ Sbjct: 745 KRGKAFYGCENYPNCDFVVWDKPVAETCPECGYVGAEAKSNKTRGSFRKCLKCSNEWDVA 804 Query: 179 A 179 A Sbjct: 805 A 805 >UniRef50_Q7NGH1 DNA topoisomerase n=1 Tax=Gloeobacter violaceus RepID=Q7NGH1_GLOVI Length = 765 Score = 173 bits (438), Expect = 3e-42, Method: Composition-based stats. Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 12/182 (6%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL-E 60 + + + C CG L+ R G+ G FLGCS YP CD+ L E Sbjct: 576 EEMKRVVIVTDHLCESCGRPLLNRYGRFGNFLGCSGYPECDFTHQLTRDNKPVPKDRPAE 635 Query: 61 GQVCPACGA-NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G C CG +++ GR+G ++ C P C ++ T ITCP+C G +V+RRS Sbjct: 636 GISCNQCGHAPMLITYGRYGEYLKC---PACGKSQPKS----TGITCPKCSKGQIVERRS 688 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGE-CPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 + GK F+ CD+YP+C F + +PI CPEC LL + + C+ C Sbjct: 689 KMGKNFYGCDQYPDCDFVLWSRPIDKPACPECGSILLYKPRKRGDDMVACS--ACKFTAP 746 Query: 179 AE 180 A+ Sbjct: 747 AQ 748 >UniRef50_C1F6V0 DNA topoisomerase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F6V0_ACIC5 Length = 878 Score = 173 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 8/159 (5%) Query: 17 KCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CG +V+R+G GPF+ C Y P C VR L + L + CP CG LVL Sbjct: 661 NCGRVMVLRNGPWGPFMACPGYNEDPPCKTVRRLNQKQQQKPPQPL-DEKCPKCGEQLVL 719 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 R G++G FI C YP+C++ K + + CPQC+ G +V++++R G F+ C YP+ Sbjct: 720 RHGQYGEFISCSGYPKCKYI----KQNTIGMKCPQCKVGEIVEKKARRGNFFYGCSEYPK 775 Query: 134 CQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQ 172 C F N+KP+ +CPEC L+EK GV C + + Sbjct: 776 CDFTANYKPVDRKCPECGSAYLMEKTLKSGVYLVCPNNK 814 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 29/160 (18%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 +E CPKCG +LV+R G++G F+ CS YP C Y++ + G CP C Sbjct: 707 DEKCPKCGEQLVLRHGQYGEFISCSGYPKCKYIK-----------QNTIGMKCPQCKVGE 755 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 +V ++ R G F GC YP+C+ T CP+C + +L+++ + G + C Sbjct: 756 IVEKKARRGNFFYGCSEYPKCDFTANYKP---VDRKCPECGSAYLMEKTLKSG-VYLVCP 811 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCA 169 N KP A E +KK G C+ Sbjct: 812 N--------NKKPSAEE----ETTTKRKKKGDTGEGVSCS 839 >UniRef50_Q9ZMV7 DNA topoisomerase 1 n=47 Tax=Epsilonproteobacteria RepID=TOP1_HELPJ Length = 736 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 15/182 (8%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S + +SCPKCG ELV ++ ++G F+ C+ YP C Y++ +++ D + + Sbjct: 561 SQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYIKQTENANDEAKQE-----L 615 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHT-----ELIDKPDETAITCPQCRTGHLVQRR 118 C CG +V + R G F+ C NYPEC++T K + CP+C G + +R Sbjct: 616 CEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEGVKCPECG-GDIALKR 674 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 S+ G F+ C+ YP+C F N KPI C +CHY L+ E+ + H C C + V Sbjct: 675 SKKGS-FYGCNNYPKCNFLSNHKPINKRCEKCHY-LMSERIYRKKKAHECIQ--CKERVF 730 Query: 179 AE 180 E Sbjct: 731 LE 732 Score = 112 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 14/149 (9%) Query: 38 YPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELID 97 YP D + K + V GQ CP CG LV + R+G FI C NYP+C++ + + Sbjct: 546 YPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYIKQTE 605 Query: 98 KPDETAIT--CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG--------EC 147 ++ A C +C G +VQ+ SR G F +C+ YPEC+ + K +C Sbjct: 606 NANDEAKQELCEKCG-GEMVQKFSRNG-AFLACNNYPECKNTKSLKNTPNAKETIEGVKC 663 Query: 148 PECHYPLLIEKKTAQGVKHFCAS-KQCGK 175 PEC + K++ +G + C + +C Sbjct: 664 PECGGD-IALKRSKKGSFYGCNNYPKCNF 691 Score = 66.8 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 10/88 (11%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 CP+CG ++ ++ K G F GC+ YP C+++ Sbjct: 650 NTPNAKETIEGVKCPECGGDIALKRSKKGSFYGCNNYPKCNFLSN----------HKPIN 699 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPE 89 + C C + R R CI E Sbjct: 700 KRCEKCHYLMSERIYRKKKAHECIQCKE 727 >UniRef50_A9FRC6 DNA topoisomerase I n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FRC6_SORC5 Length = 864 Score = 170 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 10/182 (5%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 +A + + C +CG+ ++ + GK+G FL C +YP C R L + V+ Sbjct: 616 LAPWKPEAEKTDIVCDECGSMMLKKWGKNGWFLSCERYPKCKATRDLSDARGTAAVR-ET 674 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQR-RS 119 C CG ++++ GRFG F+ C YP C++T + + CP C + R R Sbjct: 675 DISCDKCGKPMIIKTGRFGDFLSCTGYPACKNTRPVP----LGVACPSCGGDLIEIRPRK 730 Query: 120 RYGKTFHSCDRY---PECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 + G+TF+ C + +C+F + KP+ CP+C + + + CA+K CG Sbjct: 731 KGGRTFYGCSNWNAEQKCEFKLWQKPVPVPCPQCGAKFV-TRTAGKKAMLVCATKDCGFK 789 Query: 177 VS 178 Sbjct: 790 QE 791 Score = 105 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 16/158 (10%) Query: 36 SQYPACDYVRPLKSSADGHIVK-VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 S Y + VC CG+ ++ + G+ G F+ C YP+C+ T Sbjct: 601 SFYKKFREQLDKSKKLAPWKPEAEKTDIVCDECGSMMLKKWGKNGWFLSCERYPKCKATR 660 Query: 95 LIDKP------DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECP 148 + ET I+C +C ++ + R+G F SC YP C+ P+ CP Sbjct: 661 DLSDARGTAAVRETDISCDKCGKPMII-KTGRFG-DFLSCTGYPACKNTRPV-PLGVACP 717 Query: 149 ECHYPL--LIEKKTAQGVKHFCAS----KQCGKPVSAE 180 C L + +K + C++ ++C + + Sbjct: 718 SCGGDLIEIRPRKKGGRTFYGCSNWNAEQKCEFKLWQK 755 >UniRef50_C1XK22 DNA topoisomerase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XK22_MEIRU Length = 836 Score = 168 bits (426), Expect = 6e-41, Method: Composition-based stats. Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 11/168 (6%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 + CPKCG L ++ + G FLGC+ YP C + L+ G+ CPAC Sbjct: 571 AKVPQKLCPKCGRPLELKVSRFGQFLGCTGYPECKHTERLELK----KEPEPIGEACPAC 626 Query: 68 G-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 G LV R GR+G FI C YPEC++T T I CP+C G +VQ+ S+ GK ++ Sbjct: 627 GEGQLVRRHGRYGSFISCSRYPECKYTRDEAPS--TGIECPKCHAGEVVQKTSKRGKPYY 684 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 C+ P C F + +CP C + + + ++ + C + C Sbjct: 685 RCNN-PACDFLSFDPLLPDKCPLCGWNEVAKGRSGKRA---CTNPGCE 728 Score = 133 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 69/141 (48%), Gaps = 6/141 (4%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL---IDKPD 100 V + ++CP CG L L+ RFG F+GC YPEC+HTE +P+ Sbjct: 558 VVREFYEPFLKDFAKVPQKLCPKCGRPLELKVSRFGQFLGCTGYPECKHTERLELKKEPE 617 Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP-IAGECPECHYPLLIEKK 159 CP C G LV+R RYG F SC RYPEC++ + P ECP+CH +++K Sbjct: 618 PIGEACPACGEGQLVRRHGRYGS-FISCSRYPECKYTRDEAPSTGIECPKCHAGEVVQKT 676 Query: 160 TAQG-VKHFCASKQCGKPVSA 179 + +G + C + C Sbjct: 677 SKRGKPYYRCNNPACDFLSFD 697 Score = 94.1 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 52/133 (39%), Gaps = 21/133 (15%) Query: 5 ALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 E+CP CG +LV R G++G F+ CS+YP C Y R G Sbjct: 613 KKEPEPIGEACPACGEGQLVRRHGRYGSFISCSRYPECKYTRD---------EAPSTGIE 663 Query: 64 CPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP C +V + + G + C N P C+ + CP C + + R Sbjct: 664 CPKCHAGEVVQKTSKRGKPYYRCNN-PACDFLSFDPLLPD---KCPLCGWNEVA--KGRS 717 Query: 122 GKTFHSCDRYPEC 134 GK +C P C Sbjct: 718 GKR--ACTN-PGC 727 >UniRef50_Q1PYZ6 DNA topoisomerase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYZ6_9BACT Length = 773 Score = 168 bits (425), Expect = 9e-41, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 11/186 (5%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M ++ C C +VIR G+HG F GCS +P C PL Sbjct: 573 MKSVKGTPEESDRICNLCSKPMVIRWGRHGKFFGCSAFPECKNTMPLDEK-GEAAPPETS 631 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL----IDKPDETAITCPQCRTGHLVQ 116 Q C CG+ ++++ R G F+ C YP C++T+ K + T C +C + +++ Sbjct: 632 DQACEKCGSPMIIKTSRHGKFMACSAYPNCKNTKSLTGETTKVEPTNEKCEKCGSPMVIR 691 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECP--ECHYPLLIEKKTAQGVKHFCAS-KQC 173 + F C YP+C+ + P +CP EC L+ G+ C+ C Sbjct: 692 FSKK--GRFMGCSGYPKCRNIKSL-PTGIKCPRDECGGDLIQRYSKKGGIFFGCSKYPDC 748 Query: 174 GKPVSA 179 Sbjct: 749 DYISKE 754 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 10/146 (6%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 ++++C KCG+ ++I++ +HG F+ CS YP C + L + C Sbjct: 626 APPETSDQACEKCGSPMIIKTSRHGKFMACSAYPNCKNTKSLTGE---TTKVEPTNEKCE 682 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ--CRTGHLVQRRSRYGK 123 CG+ +V+R + G F+GC YP+C + + + T I CP+ C G L+QR S+ G Sbjct: 683 KCGSPMVIRFSKKGRFMGCSGYPKCRNIKSLP----TGIKCPRDECG-GDLIQRYSKKGG 737 Query: 124 TFHSCDRYPECQFAINFKPIAGECPE 149 F C +YP+C + PIAGE P Sbjct: 738 IFFGCSKYPDCDYISKELPIAGEEPT 763 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 6 LFTVRNNESCP--KCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + ++ CP +CG +L+ R K G F GCS+YP CDY+ A E Sbjct: 710 IKSLPTGIKCPRDECGGDLIQRYSKKGGIFFGCSKYPDCDYISKELPIAGEEPTSENE 767 >UniRef50_Q5SM69 DNA topoisomerase n=2 Tax=Thermus thermophilus RepID=Q5SM69_THET8 Length = 830 Score = 168 bits (424), Expect = 1e-40, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 14/166 (8%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 ++CP+CG L ++ ++G FLGC+ YP C Y PL+ G+ CP C Sbjct: 584 AQVPKKTCPRCGRPLELKVSRYGQFLGCTGYPECTYTEPLERR-----EAEPIGEACPKC 638 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 G L+ ++GR+G FI C YPEC++T P T TCP+C G ++++RSR G+ ++ Sbjct: 639 GRPLLRKEGRYGTFIACSGYPECDYTRDDGTP--TGHTCPKCG-GRVLEKRSRKGRPYYK 695 Query: 128 CDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 C+ C F + + CP C +PL+ +G K C + C Sbjct: 696 CEN-NACDFLSFYPLLEEACPACGWPLV-----KKGEKALCLNPAC 735 Score = 126 bits (317), Expect = 2e-28, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL--IDKPDE 101 V + + + CP CG L L+ R+G F+GC YPEC +TE + + Sbjct: 571 VVWEFYEPFLGELAQVPKKTCPRCGRPLELKVSRYGQFLGCTGYPECTYTEPLERREAEP 630 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-KPIAGECPECHYPLLIEKKT 160 CP+C L+++ RYG TF +C YPEC + + P CP+C +L ++ Sbjct: 631 IGEACPKCGRP-LLRKEGRYG-TFIACSGYPECDYTRDDGTPTGHTCPKCGGRVLEKRSR 688 Query: 161 AQGVKHFCASKQCGKPVS 178 + C + C Sbjct: 689 KGRPYYKCENNACDFLSF 706 Score = 96.1 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 22/148 (14%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 E+CPKCG L+ + G++G F+ CS YP CDY R G Sbjct: 624 ERREAEPIGEACPKCGRPLLRKEGRYGTFIACSGYPECDYTRDD---------GTPTGHT 674 Query: 64 CPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 CP CG ++ ++ R G + C N + + CP C + + G Sbjct: 675 CPKCGGRVLEKRSRKGRPYYKCEN----NACDFLSFYPLLEEACPACGWPLV-----KKG 725 Query: 123 KTFHSCDRYPECQ-FAINFKPIAGECPE 149 + C P C + P E + Sbjct: 726 EKAL-CLN-PACPEHEPSLLPAPKEAKK 751 >UniRef50_C6BUQ9 DNA topoisomerase n=14 Tax=Desulfovibrionales RepID=C6BUQ9_DESAD Length = 800 Score = 165 bits (417), Expect = 7e-40, Method: Composition-based stats. Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 13/179 (7%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ-----VCP 65 +C KCG+ + I+ G FLGC+ YP C ++ + +G I V CP Sbjct: 624 TGVTCEKCGSAMAIKRSNRGEFLGCTGYPDCRNIKNFERDDEGKIKVVETPTAQIVGKCP 683 Query: 66 ACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCR-TGHLVQRRSRYG 122 C +L+++ R G FI C NYP+C+H + T + CP+ G LV++ SR G Sbjct: 684 DCDDGDLIIKHARTGSRFIACSNYPDCKHAKPFS----TGVKCPREGCKGELVEKSSRRG 739 Query: 123 KTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKPVSAE 180 K F+SCD+YP+C +A+ + PI G CP+C +P+L++K T +G C K CG E Sbjct: 740 KLFYSCDQYPDCDYAVWYPPIDGPCPKCGHPVLVKKTTRAKGEHIACPEKGCGYVQGEE 798 Score = 62.2 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 20/109 (18%) Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG--- 145 E E+ ++T ITC +C + +++ R G+ F C YPEC+ +NF Sbjct: 556 ETAAKEMKRGGEDTGITCDKCESPMVIKF-GRTGE-FLGCSNYPECKNIVNFTRDEKGKI 613 Query: 146 -------------ECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 C +C + I K++ +G C C + E Sbjct: 614 VVLEEEPPEETGVTCEKCGSAMAI-KRSNRGEFLGCTGYPDCRNIKNFE 661 >UniRef50_Q7MGL0 DNA topoisomerase I-related protein n=77 Tax=Gammaproteobacteria RepID=Q7MGL0_VIBVY Length = 231 Score = 161 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 87/177 (49%), Positives = 119/177 (67%), Gaps = 7/177 (3%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 + CP+CG ELV++ GKHG FLGC+QYP CDYV+PL + + ++ G CP Sbjct: 56 EHALEHTPCPQCGGELVLKHGKHGAFLGCNQYPQCDYVKPLHQNDGHIVKEL--GVACPE 113 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-----CPQCRTGHLVQRRSRY 121 CG LVLRQGR+GMF+GC +YP C H E I++P+ CP+C GHLV+R++R+ Sbjct: 114 CGNELVLRQGRYGMFVGCSHYPLCHHIEPINQPEPEQNPKALFACPECGKGHLVERKTRF 173 Query: 122 GKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 GKTF++CD YP+C+FA+N P+ G C C +PLL+EKK A GVK CA+++C S Sbjct: 174 GKTFYACDNYPKCKFAVNLPPVKGHCETCGFPLLVEKKLASGVKLQCANRKCQHTQS 230 Score = 53.7 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 12/95 (12%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF--------KP 142 + CPQC ++ + F C++YP+C + K Sbjct: 49 RTLFSAHEHALEHTPCPQCGGELVL--KHGKHGAFLGCNQYPQCDYVKPLHQNDGHIVKE 106 Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 + CPEC L++ ++ G+ C+ C Sbjct: 107 LGVACPECGNELVL-RQGRYGMFVGCSHYPLCHHI 140 >UniRef50_A8RBU5 DNA topoisomerase n=9 Tax=Bacteria RepID=A8RBU5_9FIRM Length = 718 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 81/140 (57%), Gaps = 12/140 (8%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M K L R E CP+CG+ELV R G++G F+ C +P+C Y + + Sbjct: 565 MEKKEL--ERTGELCPECGSELVYRVGRYGKFISCINFPSCRYTKS------EEEEENAS 616 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHT---ELIDKPDETAITCPQCRTGHLVQR 117 +VCP CG+ +V+++GR+G F+ C NYP C++ + ++P T CP+C LV+R Sbjct: 617 DEVCPHCGSKMVMKKGRYGSFLACSNYPTCKYIKNNKPKEEPVPTGENCPECGHP-LVKR 675 Query: 118 RSRYGKTFHSCDRYPECQFA 137 +SR+G TF C YP+C++ Sbjct: 676 KSRFGTTFVGCSNYPKCRYI 695 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 10/140 (7%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE-TA 103 G++CP CG+ LV R GR+G FI CIN+P C +T+ ++ + + Sbjct: 558 LENAYEHMEKKELERTGELCPECGSELVYRVGRYGKFISCINFPSCRYTKSEEEEENASD 617 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE------CPECHYPLLIE 157 CP C + +V ++ RYG F +C YP C++ N KP CPEC +PL+ Sbjct: 618 EVCPHCGS-KMVMKKGRYGS-FLACSNYPTCKYIKNNKPKEEPVPTGENCPECGHPLVKR 675 Query: 158 KKTAQGVKHFCAS-KQCGKP 176 K C++ +C Sbjct: 676 KSRFGTTFVGCSNYPKCRYI 695 Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%) Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----IAGECPECHYPLLI 156 T CP+C + LV R RYGK F SC +P C++ + + CP C +++ Sbjct: 572 RTGELCPECGS-ELVYRVGRYGK-FISCINFPSCRYTKSEEEEENASDEVCPHCGSKMVM 629 Query: 157 EKKTAQGVKHFCAS-KQCGKPVSAE 180 KK G C++ C + + Sbjct: 630 -KKGRYGSFLACSNYPTCKYIKNNK 653 Score = 39.8 bits (91), Expect = 0.045, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%) Query: 140 FKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 + CPEC L+ G C + C S Sbjct: 570 LERTGELCPECGSELVYRV-GRYGKFISCINFPSCRYTKS 608 >UniRef50_A7NJW2 DNA topoisomerase I n=3 Tax=Bacteria RepID=A7NJW2_ROSCS Length = 836 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 14/153 (9%) Query: 1 MAKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV--- 56 M + + +CP+C +L ++ G++G FL C++YP CD+ +DG IV Sbjct: 590 MRNVKREEILTDLTCPRCNQGQLAVKFGRNGEFLACNRYPECDFTSDFHRDSDGRIVLDA 649 Query: 57 ---KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE-------LIDKPDETAITC 106 +C CG ++L++ RFG F+GC YPEC++T P T +TC Sbjct: 650 PASPETSDVLCDVCGRPMILKKSRFGPFLGCSGYPECKNTRRLDKQGKPAPLPKATGVTC 709 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 P+C G L++RR ++G+ F C+RYP+C + +N Sbjct: 710 PKCGQGELLERRGKFGRPFFGCNRYPKCDYLVN 742 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 28/164 (17%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDK-- 98 +S + ++L CP C L ++ GR G F+ C YPEC+ T + Sbjct: 582 KLAEAQRSMRNVKREEILTDLTCPRCNQGQLAVKFGRNGEFLACNRYPECDFTSDFHRDS 641 Query: 99 -----------PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE- 146 P+ + + C C ++ ++SR+G F C YPEC+ Sbjct: 642 DGRIVLDAPASPETSDVLCDVCGRPMIL-KKSRFG-PFLGCSGYPECKNTRRLDKQGKPA 699 Query: 147 ---------CPECHYPLLIEKKTAQG-VKHFCAS-KQCGKPVSA 179 CP+C L+E++ G C +C V++ Sbjct: 700 PLPKATGVTCPKCGQGELLERRGKFGRPFFGCNRYPKCDYLVNS 743 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + ++ C CG ++++ + GPFLGCS YP C R L + G Sbjct: 649 APASPETSDVLCDVCGRPMILKKSRFGPFLGCSGYPECKNTRRLDKQGKPAPLPKATGVT 708 Query: 64 CPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAIT 105 CP CG L+ R+G+FG F GC YP+C++ Sbjct: 709 CPKCGQGELLERRGKFGRPFFGCNRYPKCDYLVNSLDEVAHYTP 752 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVL 59 K A +CPKCG EL+ R GK G F GC++YP CDY+ + Sbjct: 696 GKPAPLPKATGVTCPKCGQGELLERRGKFGRPFFGCNRYPKCDYLVNSLDEVAHYTPDAN 755 Query: 60 EGQV 63 E Sbjct: 756 EASK 759 >UniRef50_C4L7Y8 DNA topoisomerase type IA zn finger domain protein n=4 Tax=Gammaproteobacteria RepID=C4L7Y8_TOLAT Length = 190 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 78/173 (45%), Positives = 104/173 (60%), Gaps = 4/173 (2%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + CP+CG L +R KHG FLGC YP C ++RPL+ I K+LE CP CG Sbjct: 18 KEYRLCPECGGALSLRRSKHGLFLGCENYPDCQFMRPLQQQNVL-IEKILEDSSCPECGK 76 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETA---ITCPQCRTGHLVQRRSRYGKTFH 126 L +++GRFG+FIGC YPEC H E + CP C+ G L + SRYGKTF+ Sbjct: 77 LLAIKKGRFGLFIGCTGYPECSHIETNNTTLADTSLLPDCPVCQQGQLQAKTSRYGKTFY 136 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 +C YP+C++AIN KPIA CP+C + LL+EK+T QG++ C K C + Sbjct: 137 ACSNYPKCKYAINDKPIAKACPQCGFSLLVEKRTRQGIRFCCPQKDCNYSAES 189 Score = 83.0 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + + + SCP+CG L I+ G+ G F+GC+ YP C ++ + + + Sbjct: 58 QNVLIEKILEDSSCPECGKLLAIKKGRFGLFIGCTGYPECSHI----ETNNTTLADTSLL 113 Query: 62 QVCPAC-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 CP C L + R+G F C NYP+C++ A CPQC LV++R+ Sbjct: 114 PDCPVCQQGQLQAKTSRYGKTFYACSNYPKCKYAINDKP---IAKACPQCGFSLLVEKRT 170 Query: 120 RYGKTFHSCDRYPECQFA 137 R G F C +C ++ Sbjct: 171 RQGIRF--CCPQKDCNYS 186 Score = 53.7 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 13/98 (13%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI-------- 143 T D+ CP+C ++R F C+ YP+CQF + Sbjct: 9 FTAQEHALDKEYRLCPECGGALSLRR--SKHGLFLGCENYPDCQFMRPLQQQNVLIEKIL 66 Query: 144 -AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 CPEC LL KK G+ C +C + Sbjct: 67 EDSSCPECGK-LLAIKKGRFGLFIGCTGYPECSHIETN 103 >UniRef50_C6ALU6 DNA topoisomerase I n=3 Tax=Pasteurellaceae RepID=C6ALU6_AGGAN Length = 194 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 80/183 (43%), Positives = 113/183 (61%), Gaps = 4/183 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + ++ E CP+CGA L I+ GK G FLGCS YP CDY++PL++S + +K+LE Sbjct: 13 MNQPLFQHTKHEEHCPQCGALLQIKQGKKGLFLGCSAYPQCDYLKPLQASLEVKTLKILE 72 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET--AITCPQCRTGHLVQRR 118 Q CP CG L L+QG FGMFIGC NYP+C + DE + CP+C+ G LV RR Sbjct: 73 -QTCPQCGHLLALKQGHFGMFIGCSNYPDCHFVVHEEAEDEMEEHVPCPECKEGQLVARR 131 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPL-LIEKKTAQGVKHFCASKQCGKPV 177 R GK F++C+R+P C+F++ KP +CP+CH L L++K+ + C +K C Sbjct: 132 GRAGKLFYACNRFPHCKFSVPTKPYLVDCPQCHGNLALLKKQQGEQRTWLCVNKTCRHIF 191 Query: 178 SAE 180 + E Sbjct: 192 TTE 194 >UniRef50_C1SMY2 DNA topoisomerase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY2_9BACT Length = 782 Score = 152 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 35/210 (16%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK------SSADGHI 55 K ++ CP C +L I+ G++G F+ C+ YP C + + Sbjct: 564 EKQFSANLKIEMKCPVCEKDLTIKYGRNGNFVACTSYPECKFTSNYERLEDGSFKLVPKE 623 Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT---------- 105 G C CG LV ++ RFG + C YPEC++ + + I Sbjct: 624 EDKPSGIECEKCGKELVFKKTRFGEVLACPGYPECKNIKNYVTLPDGEIKILAAGEEIGT 683 Query: 106 -CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG--------------ECPEC 150 CP+C G + + F C YP+C F N + +C +C Sbjct: 684 PCPKCEAG--LTIKGGRNGMFIGCKNYPDCDFTANMEVNEQGDIIPKYDKVDENVKCEKC 741 Query: 151 HYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 P+++ KK+ +G C +C S Sbjct: 742 GKPMVL-KKSRRGKFFACTGYPECKNAKST 770 Score = 94.5 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 66/167 (39%), Gaps = 31/167 (18%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE------- 94 + L+ + + CP C +L ++ GR G F+ C +YPEC+ T Sbjct: 555 KFKPELEKAEKQFSANLKIEMKCPVCEKDLTIKYGRNGNFVACTSYPECKFTSNYERLED 614 Query: 95 ------LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-------- 140 ++ + I C +C LV +++R+G+ +C YPEC+ N+ Sbjct: 615 GSFKLVPKEEDKPSGIECEKCGK-ELVFKKTRFGEV-LACPGYPECKNIKNYVTLPDGEI 672 Query: 141 ------KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 + I CP+C L I K G+ C + C + E Sbjct: 673 KILAAGEEIGTPCPKCEAGLTI-KGGRNGMFIGCKNYPDCDFTANME 718 >UniRef50_C9RBU3 DNA topoisomerase n=2 Tax=Bacteria RepID=C9RBU3_AMMDK Length = 686 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 CP CG +V + GR+G F+ C YPEC+ + T + CP+C G LV Sbjct: 568 PDTFTDISCPRCGCPMVKKTGRYGEFLACSGYPECQMRMPVG----TGVKCPRCG-GELV 622 Query: 116 QRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 +RRS+ G+ F+ C+RYPEC F + +P+ CPEC L++ + + + C ++ CG Sbjct: 623 KRRSKKGRYFYGCNRYPECNFVVWSEPVPEPCPECGS-LMVRRGRGKKKRVICTNESCGY 681 Query: 176 PVSAE 180 E Sbjct: 682 QRLEE 686 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 45/137 (32%), Positives = 62/137 (45%), Gaps = 18/137 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + K +L + SCP+CG +V ++G++G FL CS YP C P+ Sbjct: 562 IEKVSLPDTFTDISCPRCGCPMVKKTGRYGEFLACSGYPECQMRMPV-----------GT 610 Query: 61 GQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G CP CG LV R+ + G F GC YPEC + E CP+C + L+ RR Sbjct: 611 GVKCPRCGGELVKRRSKKGRYFYGCNRYPECNFVVWSEPVPE---PCPECGS--LMVRRG 665 Query: 120 RYGKTFHSCDRYPECQF 136 R K C C + Sbjct: 666 RGKKKRVICTNE-SCGY 681 Score = 40.2 bits (92), Expect = 0.029, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%) Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 + ++ CP C P++ +K G C+ +C Sbjct: 564 KVSLPDTFTDISCPRCGCPMV-KKTGRYGEFLACSGYPECQ 603 >UniRef50_P46494 Uncharacterized protein HI0656.1 n=27 Tax=Pasteurellaceae RepID=Y656A_HAEIN Length = 178 Score = 151 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 3/180 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M +S + E CP+CGA L I+ GK G FLGCS YP CDY+RPL+ S + + Sbjct: 1 MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRSEHKVLKTL-- 58 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP CG L L+QG FGMFIGC +YPEC+ + E ITCP+C+TGHL+ RR R Sbjct: 59 DEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKITCPECKTGHLISRRGR 118 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPL-LIEKKTAQGVKHFCASKQCGKPVSA 179 GK F+ CD +P+C+F++ KP + CP CH+PL L++ + + CA+K C Sbjct: 119 QGKIFYGCDNFPKCKFSLPAKPYSVPCPTCHFPLSLLKSEDGEKQIFQCANKTCRHIFEQ 178 >UniRef50_Q67PC7 DNA topoisomerase n=3 Tax=Bacteria RepID=Q67PC7_SYMTH Length = 735 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 + C CG +V++ GRFG F+ C +PEC+ T+ I + T +TCP C TG +V Sbjct: 604 EDEVSDVPCEKCGRLMVVKHGRFGKFLACPGFPECKSTKPILEE--TGVTCPACGTGRIV 661 Query: 116 QRRSRYGKT-FHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCASKQC 173 +R+S+ G F+ C YP+C F KP+ CPEC P L+EK+ + G+ H C C Sbjct: 662 ERKSKKGGRRFYGCTNYPDCNFVSWEKPVNRLCPECGAPYLVEKRIKELGLSHVCKQPDC 721 Query: 174 GKPVSAE 180 G E Sbjct: 722 GYVEPVE 728 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 16/145 (11%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 L ++ C KCG +V++ G+ G FL C +P C +P+ G C Sbjct: 602 ELEDEVSDVPCEKCGRLMVVKHGRFGKFLACPGFPECKSTKPILEE---------TGVTC 652 Query: 65 PACG-ANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 PACG +V R+ + G F GC NYP+C + CP+C +LV++R + Sbjct: 653 PACGTGRIVERKSKKGGRRFYGCTNYPDCNFVSWEKPVNRL---CPECGAPYLVEKRIKE 709 Query: 122 GKTFHSCDRYPECQFAINFKPIAGE 146 H C + P+C + + + Sbjct: 710 LGLSHVCKQ-PDCGYVEPVESMEEV 733 >UniRef50_Q15ZX8 DNA topoisomerase, type IA, zn finger n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15ZX8_PSEA6 Length = 186 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 1/174 (0%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 + + CP C A L +R K+G F+GCS YP C+Y +PL S + + V+EG CP Sbjct: 13 ESAFDPGPCPVCNAPLQLRHSKNGAFIGCSDYPKCEYSKPLHDSDNTEL-TVIEGSHCPE 71 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 C + LV+R+GR+GM+I C N+PEC + + D + CP C GHL +R ++YGK F+ Sbjct: 72 CESELVIRKGRYGMYIACSNFPECHYVKSNKTQDTDKVECPSCHKGHLTKRANKYGKNFY 131 Query: 127 SCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 CD+YP+C +A+NF P+A CP+C +P++ EKK A G+ C ++CG A+ Sbjct: 132 PCDQYPQCHYALNFTPVAHACPKCAWPVMQEKKAAAGLIWQCPERKCGYKQPAQ 185 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 13/100 (13%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE---- 146 + CP C + R F C YP+C+++ Sbjct: 6 HSLFSTHESAFDPGPCPVCNAPLQL--RHSKNGAFIGCSDYPKCEYSKPLHDSDNTELTV 63 Query: 147 -----CPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 CPEC L+I K G+ C++ +C S + Sbjct: 64 IEGSHCPECESELVIRK-GRYGMYIACSNFPECHYVKSNK 102 Score = 39.8 bits (91), Expect = 0.040, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 13/95 (13%) Query: 3 KSALFTVRNNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLE 60 KS + CP C L R+ K+G F C QYP C Y Sbjct: 99 KSNKTQDTDKVECPSCHKGHLTKRANKYGKNFYPCDQYPQCHYALNF----------TPV 148 Query: 61 GQVCPACGAN-LVLRQGRFGMFIGCINYPECEHTE 94 CP C + ++ G+ C Sbjct: 149 AHACPKCAWPVMQEKKAAAGLIWQCPERKCGYKQP 183 >UniRef50_B0BQ81 Conserved DNA topoisomerase I-related protein n=3 Tax=Pasteurellaceae RepID=B0BQ81_ACTPJ Length = 177 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 72/177 (40%), Positives = 99/177 (55%), Gaps = 3/177 (1%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 S + + E CP+CG+ L I+ GK G FLGCS YP CDY++ L + + Sbjct: 2 SIFKSTKQVELCPECGSALQIKRGKQGLFLGCSSYPQCDYIKSLHQTNRVIKDLTE---I 58 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 CP CG L L+QG FG+FIGC +YPEC T + ++ CP+C+T LV R+ R GK Sbjct: 59 CPECGHFLQLKQGNFGIFIGCSHYPECHFTVHDEAEEQEEFDCPECKTHKLVARKGRSGK 118 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 TF+ C +P C+F + KPIA CP+C ++ KK + CA+K C S E Sbjct: 119 TFYGCSGFPNCKFTLASKPIAKTCPQCQCSIVTLKKQRGKSMYLCANKSCQYLFSEE 175 >UniRef50_D1C7I9 DNA topoisomerase n=8 Tax=Bacteria RepID=D1C7I9_SPHTD Length = 769 Score = 149 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 6/122 (4%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 +VC CG +V++ GR+G F+ C +PEC + + + +TCPQC G +VQ Sbjct: 648 DEPTDEVCEKCGRPMVIKLGRYGRFLACSGFPECRNARPLLQK--IGVTCPQCGEGDIVQ 705 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 RR++ G+ F+ C RYP+C F+ KP CP+C L+ + G C+++ C Sbjct: 706 RRTKKGRVFYGCSRYPDCNFSSWEKPTGEPCPQCGGVLVETR----GGTVRCSTQGCQYR 761 Query: 177 VS 178 + Sbjct: 762 AT 763 Score = 117 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 20/138 (14%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + +E C KCG +VI+ G++G FL CS +P C RPL Sbjct: 641 IGRVKVADEPTDEVCEKCGRPMVIKLGRYGRFLACSGFPECRNARPLLQKI--------- 691 Query: 61 GQVCPACG-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP CG ++V R+ + G F GC YP+C + T CPQC G LV+ R Sbjct: 692 GVTCPQCGEGDIVQRRTKKGRVFYGCSRYPDCNFSSWEKP---TGEPCPQCG-GVLVETR 747 Query: 119 SRYGKTFHSCDRYPECQF 136 C CQ+ Sbjct: 748 GGT----VRCST-QGCQY 760 >UniRef50_C9LSJ2 DNA topoisomerase n=3 Tax=Veillonellaceae RepID=C9LSJ2_9FIRM Length = 836 Score = 149 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 72/123 (58%), Gaps = 3/123 (2%) Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 + + +C CG N+V++QGR+G F+ C +P+C +T+ + K T + CP+C G +V Sbjct: 682 PEEVSDVICEKCGRNMVVKQGRYGKFLACPGFPDCRNTKPLLKD--TGVPCPKCG-GRIV 738 Query: 116 QRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 +RRSR G+ F+ C+ YP C + +P+ +CPEC +L + + +C++++C Sbjct: 739 ERRSRRGQAFYGCENYPACDYVTWDQPLTEKCPECGAFMLRHRYKNGRILPYCSNEECKT 798 Query: 176 PVS 178 + Sbjct: 799 RID 801 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 16/150 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + ++ C KCG +V++ G++G FL C +P C +PL Sbjct: 676 IGEVEIPEEVSDVICEKCGRNMVVKQGRYGKFLACPGFPDCRNTKPLLKD---------T 726 Query: 61 GQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G CP CG +V R+ R G F GC NYP C++ CP+C L R Sbjct: 727 GVPCPKCGGRIVERRSRRGQAFYGCENYPACDYVTWDQP---LTEKCPECGAFMLRHRY- 782 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPE 149 + G+ C EC+ PI E + Sbjct: 783 KNGRILPYCSNE-ECK-TRIDHPINKEIEK 810 >UniRef50_D1BMP2 DNA topoisomerase n=6 Tax=Firmicutes RepID=D1BMP2_VEIPT Length = 791 Score = 149 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 2/117 (1%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 + ++C C + +V + GR+G F+ C N+PEC++T+ I T +TCP+C+ G +V+ Sbjct: 639 SMESDEICELCNSPMVYKFGRYGKFLACSNFPECKNTKPITVG--TGVTCPKCKEGEIVE 696 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQC 173 R+SR G+ F+ C+RYP+C F + KP C C ++ + VK FC+++ C Sbjct: 697 RKSRRGRIFYGCNRYPQCDFTLWDKPTHDFCETCGSIMVEKTYKNGTVKKFCSNETC 753 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 15/132 (11%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + + ++ ++E C C + +V + G++G FL CS +P C +P+ Sbjct: 632 VDRIEIASMESDEICELCNSPMVYKFGRYGKFLACSNFPECKNTKPITVG---------T 682 Query: 61 GQVCPACG-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP C +V R+ R G F GC YP+C+ T + C C + +V++ Sbjct: 683 GVTCPKCKEGEIVERKSRRGRIFYGCNRYPQCDFTLWDKPTHDF---CETCGS-IMVEKT 738 Query: 119 SRYGKTFHSCDR 130 + G C Sbjct: 739 YKNGTVKKFCSN 750 >UniRef50_Q0HPA2 DNA topoisomerase, type IA, zn finger domain protein n=11 Tax=Alteromonadales RepID=Q0HPA2_SHESM Length = 187 Score = 148 bits (373), Expect = 9e-35, Method: Composition-based stats. Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 2/169 (1%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + E CP+CG+EL ++ KHG F+GC+ YP C Y RPL +EG CP CG Sbjct: 17 EKEFELCPECGSELSVKHSKHGSFIGCNNYPTCQYTRPLVQHESIETQV-IEGSKCPECG 75 Query: 69 ANLVLRQGRFGMFIGCINYPECEHT-ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 L ++ GRFG+FIGC YP C H + D+ + CP+C+TG L R SR+GK+F++ Sbjct: 76 HELAVKSGRFGIFIGCTQYPSCTHIERPDQESDKPEVACPECKTGKLEHRTSRFGKSFYA 135 Query: 128 CDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 C YP+C+F +N+ P+A CP C + +L+E+K A G++ C K C Sbjct: 136 CSAYPKCKFIVNYPPVAETCPSCGFGILVERKGAAGMRLECPQKSCKYK 184 Score = 71.4 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 +S V CP+CG EL ++SG+ G F+GC+QYP+C ++ Sbjct: 59 ESIETQVIEGSKCPECGHELAVKSGRFGIFIGCTQYPSCTHIERPDQE------SDKPEV 112 Query: 63 VCPACG-ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP C L R RFG F C YP+C+ A TCP C G LV+R+ Sbjct: 113 ACPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYPP---VAETCPSCGFGILVERKGA 169 Query: 121 YG 122 G Sbjct: 170 AG 171 Score = 47.1 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 13/95 (13%) Query: 1 MAKSALFTVRNNESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKV 58 + + + + +CP+C +L R+ + G F CS YP C ++ Sbjct: 100 IERPDQESDKPEVACPECKTGKLEHRTSRFGKSFYACSAYPKCKFIVNYP---------- 149 Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEH 92 + CP+CG LV R+G GM + C Sbjct: 150 PVAETCPSCGFGILVERKGAAGMRLECPQKSCKYK 184 >UniRef50_C0QYG0 DNA topoisomerase n=2 Tax=Brachyspira RepID=C0QYG0_BRAHW Length = 716 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC 109 + VC CG ++ R GR+G FI C +PEC++T + CP+C Sbjct: 588 NNMKDFFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNT-----KGISFGVCPKC 642 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCA 169 G + +RS+ G+ F+ C YP+C F KP+ CP+C ++ + +G+ C Sbjct: 643 G-GDITLKRSKRGREFYGCSNYPKCDFVSWDKPLQEPCPKCGGLMVEKNIKNKGLFKVCI 701 Query: 170 SKQCGKPVS 178 + CG Sbjct: 702 KEDCGYSEE 710 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 18/145 (12%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 F + C KCG +++ R G++G F+ CS +P C + + Sbjct: 589 NMKDFFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGISFG----------- 637 Query: 62 QVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 VCP CG ++ L++ + G F GC NYP+C+ E CP+C G +V++ + Sbjct: 638 -VCPKCGGDITLKRSKRGREFYGCSNYPKCDFVSWDKPLQE---PCPKCG-GLMVEKNIK 692 Query: 121 YGKTFHSCDRYPECQFAINFKPIAG 145 F C + +C ++ K Sbjct: 693 NKGLFKVCIKE-DCGYSEEIKEDEE 716 >UniRef50_B2KBN6 DNA topoisomerase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN6_ELUMP Length = 765 Score = 146 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 12/150 (8%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 ++E CP CG+ +VIR + G +L CS YP C L SS + + + + Sbjct: 606 QRAAPKPSDEKCPLCGSPMVIRRSRFGEYLACSTYPECKGKINLTSSGEKLAPE-VTEEK 664 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDK---------PDETAITCPQCRTGHL 114 C CG+ +V+R GR G F+ C +P+C++T ID P ET I C +C L Sbjct: 665 CEKCGSPMVIRSGRRGKFMACSAFPKCKNTFSIDASGNKVASSGPIETKIKCEKCGKPML 724 Query: 115 VQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 + R S+ G+ F C YP+C+ ++ P Sbjct: 725 L-RASKRGE-FLGCSGYPKCKTIVSVSPEE 752 Score = 115 bits (288), Expect = 7e-25, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 63/160 (39%), Gaps = 22/160 (13%) Query: 38 YPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELID 97 Y + CP CG+ +V+R+ RFG ++ C YPEC+ + Sbjct: 591 YEGFKKDLATADKDMQRAAPKPSDEKCPLCGSPMVIRRSRFGEYLACSTYPECKGKINLT 650 Query: 98 K------PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---------- 141 P+ T C +C + +V R R GK F +C +P+C+ + Sbjct: 651 SSGEKLAPEVTEEKCEKCGSP-MVIRSGRRGK-FMACSAFPKCKNTFSIDASGNKVASSG 708 Query: 142 --PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 +C +C P+L+ + +G C+ +C VS Sbjct: 709 PIETKIKCEKCGKPMLLRA-SKRGEFLGCSGYPKCKTIVS 747 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKS--SADGHIVKVLEG 61 L E C KCG+ +VIRSG+ G F+ CS +P C + + + + Sbjct: 654 EKLAPEVTEEKCEKCGSPMVIRSGRRGKFMACSAFPKCKNTFSIDASGNKVASSGPIETK 713 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 C CG ++LR + G F+GC YP+C+ + + I Sbjct: 714 IKCEKCGKPMLLRASKRGEFLGCSGYPKCKTIVSVSPEEIAKIKK 758 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 25/53 (47%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + C KCG +++R+ K G FLGCS YP C + + I K E Sbjct: 709 PIETKIKCEKCGKPMLLRASKRGEFLGCSGYPKCKTIVSVSPEEIAKIKKEHE 761 >UniRef50_A1SR33 DNA topoisomerase, type IA, zn finger domain protein n=2 Tax=Psychromonas RepID=A1SR33_PSYIN Length = 187 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 81/176 (46%), Positives = 110/176 (62%), Gaps = 7/176 (3%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 + E CP+C +EL IR+ K G FLGCS YP C Y+RPL I KVL G C Sbjct: 10 SHHKKTKELCPECASELHIRNSKQGIFLGCSNYPECKYLRPLHEK--SEIEKVLPGTRCA 67 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTEL-----IDKPDETAITCPQCRTGHLVQRRSR 120 CG VL+QG++G+FIGC YPEC HTE ++ ++ CP C+ GHL++R SR Sbjct: 68 LCGKEQVLKQGKYGLFIGCSAYPECSHTEQLSEKKEIADEKESVPCPSCKNGHLIKRHSR 127 Query: 121 YGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 +GK F++CD YP C++A+N KP+ CP+CH+P+L+E+KTA + C K CG Sbjct: 128 FGKIFYACDNYPSCKYAVNDKPVNQFCPDCHWPILVERKTASTFRIICPKKGCGYR 183 Score = 68.7 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 7/120 (5%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 KS + V C CG E V++ GK+G F+GCS YP C + L I E Sbjct: 53 EKSEIEKVLPGTRCALCGKEQVLKQGKYGLFIGCSAYPECSHTEQLSEK--KEIADEKES 110 Query: 62 QVCPAC-GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 CP+C +L+ R RFG F C NYP C++ ++ CP C LV+R++ Sbjct: 111 VPCPSCKNGHLIKRHSRFGKIFYACDNYPSCKYAVNDKPVNQF---CPDCHWPILVERKT 167 >UniRef50_B9L0B0 DNA topoisomerase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0B0_THERP Length = 744 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 ++ + G+VC CG +V+++ RFG F+ C +PEC++ + + + C Sbjct: 610 EQTMERVRLADQPSGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLLEK--IGVRC 667 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 PQC G +V RRSR G+TF+ C RYP+C F +P CP+C L++ + Sbjct: 668 PQCGEGEIVVRRSRKGRTFYGCSRYPDCDFVSWERPTGERCPQCGGVLVVSVR-RGQESV 726 Query: 167 FCASKQCGKPVSAE 180 C+S C + E Sbjct: 727 RCSS--CSYRPAEE 738 Score = 119 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 61/150 (40%), Gaps = 23/150 (15%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + L + E C CG +VI+ + G FL CS +P C RPL Sbjct: 613 MERVRLADQPSGEVCELCGRPMVIKESRFGRFLSCSGFPECKNKRPLLEKI--------- 663 Query: 61 GQVCPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP CG +V+R+ R G F GC YP+C+ T CPQC +V Sbjct: 664 GVRCPQCGEGEIVVRRSRKGRTFYGCSRYPDCDFVSWERP---TGERCPQCGGVLVVSV- 719 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAGECP 148 R G+ C C + +P + P Sbjct: 720 -RRGQESVRCS---SCSY----RPAEEKAP 741 >UniRef50_Q4L5V2 DNA topoisomerase 1 n=155 Tax=Firmicutes RepID=TOP1_STAHJ Length = 689 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 D R + I G+ C CG+ +V++ GR+G F+ C N+P+C +T Sbjct: 555 DVERAEEEMEKVEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNT--KAIVKT 612 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 +TCP+C+ G +V+R+S+ + F+ C YPEC F KP+ +CP+C++ L+E K Sbjct: 613 IGVTCPKCKDGDVVERKSKKNRLFYGCSNYPECDFISWDKPVGRDCPKCNH-YLMEHKKG 671 Query: 162 QGVKHFCASKQCGKPVSAE 180 + + C++ C + Sbjct: 672 RSSQVICSN--CDYKEEVQ 688 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 19/144 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M K + E C CG+ +VI+ G++G F+ CS +P C + + Sbjct: 563 MEKVEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNFPDCRNTK---------AIVKTI 613 Query: 61 GQVCPAC--GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP C G + + + +F GC NYPEC+ CP+C + ++ Sbjct: 614 GVTCPKCKDGDVVERKSKKNRLFYGCSNYPECDFISWDKP---VGRDCPKCNHYLMEHKK 670 Query: 119 SRYGKTFHSCDRYPECQFAINFKP 142 R + C C + + Sbjct: 671 GRSSQ--VICSN---CDYKEEVQK 689 >UniRef50_C0W9S2 DNA topoisomerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S2_9FIRM Length = 754 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 3/121 (2%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTG 112 ++ C CG +V++ GR G F+ C +PEC +T+ + + CP C Sbjct: 568 KPQEVIVSDVKCEKCGRMMVVKTGRHGKFLACPGFPECRNTKPYYEK--IGVACPLCGHD 625 Query: 113 HLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQ 172 +V R+++ G+TF+ C YPEC F KPI CP C + +L + V H C++ + Sbjct: 626 LIV-RKTKTGRTFYGCSHYPECHFTSWDKPINETCPLCGHIMLEAVQRGGKVVHHCSNPE 684 Query: 173 C 173 C Sbjct: 685 C 685 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 15/139 (10%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + ++ C KCG +V+++G+HG FL C +P C +P G Sbjct: 568 KPQEVIVSDVKCEKCGRMMVVKTGRHGKFLACPGFPECRNTKPYYEKI---------GVA 618 Query: 64 CPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 CP CG +L++R+ + G F GC +YPEC T +E TCP C +++ R G Sbjct: 619 CPLCGHDLIVRKTKTGRTFYGCSHYPECHFTSWDKPINE---TCPLCG-HIMLEAVQRGG 674 Query: 123 KTFHSCDRYPECQFAINFK 141 K H C PEC + K Sbjct: 675 KVVHHCSN-PECPNSGAKK 692 >UniRef50_UPI00016C444E DNA topoisomerase I n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C444E Length = 985 Score = 141 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 25/199 (12%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKH--GPFLGCSQY---PACDYVRPLKSSADGHIV 56 A+ + E CPKCG ++ R G F GC+ Y P C Y++P A+ Sbjct: 702 AEMPVARELTGEKCPKCGRDMQKRYSTTTGGFFEGCTGYSADPPCKYIKPRPGEAEREGP 761 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD-------ETAITCPQC 109 + CPACG ++V + GRFG+F C P+C T + T CP+C Sbjct: 762 T-VTDIPCPACGKHMVRKVGRFGVFYTCEGAPDCPTTMNENAEGVRTVTALPTKHKCPKC 820 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAI-------NFKPIAG--ECPECHYPLLIEKKT 160 +L+ + S+ GK + C +C+F KP C +C P++I K Sbjct: 821 EKHNLLLKESKAGKKYVQCPD-AKCKFISDADADGAPVKPADTGVACEKCGSPMVI-KVA 878 Query: 161 AQGVKHFCAS-KQCGKPVS 178 +G C+ +C S Sbjct: 879 WRGPFLSCSGYPKCRNAKS 897 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 73/205 (35%), Gaps = 40/205 (19%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + CP CG +V + G+ G F C P C + + + Sbjct: 755 EAEREGPTVTDIPCPACGKHMVRKVGRFGVFYTCEGAPDCPTTMNENAEGVRTVTALPTK 814 Query: 62 QVCPACGAN-LVLRQGRFG-MFIGCINYPECEHTEL------IDKPDETAITCPQCRTGH 113 CP C + L+L++ + G ++ C + +C+ KP +T + C +C + Sbjct: 815 HKCPKCEKHNLLLKESKAGKKYVQCPD-AKCKFISDADADGAPVKPADTGVACEKCGSPM 873 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAI----------------NFKPIAGE----------- 146 +++ R F SC YP+C+ A + + + Sbjct: 874 VIKVAWR--GPFLSCSGYPKCRNAKSINAELREKLKDILPPPQEKVEKKEDPALSVEVTE 931 Query: 147 -CPECHYPL-LIEKKTAQGVKHFCA 169 CPEC PL L + + G C+ Sbjct: 932 TCPECGAPLKLRKSRFGPGYYLGCS 956 Score = 91.1 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 24/150 (16%) Query: 53 GHIVKVLEGQVCPACGANLVLR--QGRFGMFIGCINY---PECEHTELIDKPDETAIT-- 105 + + L G+ CP CG ++ R G F GC Y P C++ + E Sbjct: 704 MPVARELTGEKCPKCGRDMQKRYSTTTGGFFEGCTGYSADPPCKYIKPRPGEAEREGPTV 763 Query: 106 ----CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF----------KPIAGECPEC- 150 CP C H+V++ R+G F++C+ P+C +N P +CP+C Sbjct: 764 TDIPCPACGK-HMVRKVGRFG-VFYTCEGAPDCPTTMNENAEGVRTVTALPTKHKCPKCE 821 Query: 151 HYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 + LL+++ A C +C A+ Sbjct: 822 KHNLLLKESKAGKKYVQCPDAKCKFISDAD 851 >UniRef50_A5D2W4 DNA topoisomerase n=4 Tax=Clostridiales RepID=A5D2W4_PELTS Length = 714 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 3/128 (2%) Query: 52 DGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT 111 + + + + C CG ++V++ GR+G F+ C +PEC T+ + +P CP+C Sbjct: 571 HVQVAEEVTEEKCDRCGRSMVVKVGRYGKFLACPGFPECRSTKPLLEP--VGAKCPRC-E 627 Query: 112 GHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASK 171 G LV RR++ G+ F C +PEC+F +P +CPEC ++ +K + C S+ Sbjct: 628 GELVVRRTKKGRKFLGCSNFPECEFVTWDQPSGTKCPECGGLMVEKKNAGKKGFLQCVSE 687 Query: 172 QCGKPVSA 179 CG +A Sbjct: 688 DCGYKKTA 695 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 18/138 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + + E C +CG +V++ G++G FL C +P C +PL Sbjct: 569 IGHVQVAEEVTEEKCDRCGRSMVVKVGRYGKFLACPGFPECRSTKPLLE---------PV 619 Query: 61 GQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 G CP C LV+R+ + G F+GC N+PECE + CP+C G +V++++ Sbjct: 620 GAKCPRCEGELVVRRTKKGRKFLGCSNFPECEFVTWDQP---SGTKCPECG-GLMVEKKN 675 Query: 120 RYGKTFHSC----DRYPE 133 K F C Y + Sbjct: 676 AGKKGFLQCVSEDCGYKK 693 >UniRef50_Q9KA23 DNA topoisomerase 1 n=107 Tax=Bacteria RepID=TOP1_BACHD Length = 690 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 + + I G++C CG +V + GR+G F+ C N+P+C +T+ I K + C Sbjct: 562 EEEMKEVEIKDEPTGEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVKE--IGVKC 619 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKH 166 P+C G +V+R+S+ + F+ C++YPEC F KPIA CP+C L+EK+T + V+ Sbjct: 620 PKCEKGEIVERKSKKRRVFYGCNQYPECDFVSWDKPIARSCPKCSS-YLVEKRTKKQVQV 678 Query: 167 FCASKQCGKPVSA 179 C+S C A Sbjct: 679 QCSS--CDYKEEA 689 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 19/138 (13%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M + + E C KCG E+V + G++G F+ CS +P C +P+ Sbjct: 565 MKEVEIKDEPTGEMCEKCGHEMVYKMGRYGKFMACSNFPDCRNTKPIVKEI--------- 615 Query: 61 GQVCPAC--GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR 118 G CP C G + + + +F GC YPEC+ A +CP+C + +LV++R Sbjct: 616 GVKCPKCEKGEIVERKSKKRRVFYGCNQYPECDFVSWDKP---IARSCPKCSS-YLVEKR 671 Query: 119 SRYGKTFHSCDRYPECQF 136 ++ C C + Sbjct: 672 TKKQVQ-VQCS---SCDY 685 >UniRef50_B0MRI8 DNA topoisomerase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRI8_9FIRM Length = 713 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 30 GPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYP 88 G F + + I VC CG +V++ G +G F+GC +P Sbjct: 562 GKFY--TGFDKMLTKAEKDMEGKRVKIPDEPTDIVCDKCGKPMVIKIGPYGKFLGCSGFP 619 Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECP 148 EC++T +ET CP C G ++ ++S+ GK F C+ Y +C F P+ +CP Sbjct: 620 ECKNT--KRIVNETGGLCPHCG-GKMLAKKSKKGKPFFGCENYKDCNFMTWDTPLEDKCP 676 Query: 149 ECHYPLLIEKKTAQGVKHFCASKQCGK 175 +C L KK + + +CA CG Sbjct: 677 KCGSTLF--KKVGKQGQVYCAKDGCGY 701 Score = 115 bits (287), Expect = 8e-25, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 17/139 (12%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + + + C KCG +VI+ G +G FLGCS +P C + + G Sbjct: 582 KRVKIPDEPTDIVCDKCGKPMVIKIGPYGKFLGCSGFPECKNTK---------RIVNETG 632 Query: 62 QVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 +CP CG ++ ++ + G F GC NY +C CP+C + L ++ + Sbjct: 633 GLCPHCGGKMLAKKSKKGKPFFGCENYKDCNFMTWDTP---LEDKCPKCGS-TLFKKVGK 688 Query: 121 YGKTFHSCDRYPECQFAIN 139 G+ + C + C + Sbjct: 689 QGQVY--CAKD-GCGYVRP 704 >UniRef50_Q2FZ32 DNA topoisomerase 1 n=260 Tax=Bacteria RepID=TOP1_STAA8 Length = 689 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 9/162 (5%) Query: 19 GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRF 78 ++ R G F S + D R + I G+ C CG+ +V++ GR+ Sbjct: 536 EGDITWRKVIDGFF---SSFKQ-DVERAEEEMEKIEIKDEPAGEDCEICGSPMVIKMGRY 591 Query: 79 GMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 G F+ C N+P+C +T + CP+C G +V+R+S+ + F+ C +YPEC F Sbjct: 592 GKFMACSNFPDCRNT--KAIVKSIGVKCPKCNDGDVVERKSKKNRVFYGCSKYPECDFIS 649 Query: 139 NFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 KPI +CP+C+ L+E K + + C++ C +A+ Sbjct: 650 WDKPIGRDCPKCN-QYLVENKKGKTTQVICSN--CDYKEAAQ 688 Score = 102 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 19/131 (14%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 E C CG+ +VI+ G++G F+ CS +P C + + G CP C Sbjct: 570 DEPAGEDCEICGSPMVIKMGRYGKFMACSNFPDCRNTK---------AIVKSIGVKCPKC 620 Query: 68 --GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 G + + + +F GC YPEC+ CP+C + ++ + + Sbjct: 621 NDGDVVERKSKKNRVFYGCSKYPECDFISWDKP---IGRDCPKCNQYLVENKKGKTTQ-- 675 Query: 126 HSCDRYPECQF 136 C C + Sbjct: 676 VICSN---CDY 683 >UniRef50_B1GYR4 DNA topoisomerase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR4_UNCTG Length = 740 Score = 136 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 12/156 (7%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + K + + +E CP CG +VIR + FLGCS YP C L Sbjct: 569 LQKQKVQAQQTSEICPNCGKNMVIRYSRKVQFLGCSGYPECKTTLSLDKDGKIAAAPRET 628 Query: 61 GQVCPACGANLVLRQGRFGM-FIGCINYPECEHTEL---------IDKPDETAITCPQCR 110 C CG++L+ + G G ++ C NYPEC+ +P+ T I C +C Sbjct: 629 DMKCDKCGSHLIKKTGFAGKQYLSCKNYPECKTLYNINKDGNKIIYPEPEHTDIKCNKCG 688 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + ++++ + G F +C +P+C+ K Sbjct: 689 S-EMLKKIGKRG-PFLTCSAFPKCRNLQWIKTNKTP 722 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 22/148 (14%) Query: 51 ADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-------PDETA 103 + ++CP CG N+V+R R F+GC YPEC+ T +DK P ET Sbjct: 570 QKQKVQAQQTSEICPNCGKNMVIRYSRKVQFLGCSGYPECKTTLSLDKDGKIAAAPRETD 629 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF------------KPIAGECPECH 151 + C +C + HL+++ GK + SC YPEC+ N + +C +C Sbjct: 630 MKCDKCGS-HLIKKTGFAGKQYLSCKNYPECKTLYNINKDGNKIIYPEPEHTDIKCNKCG 688 Query: 152 YPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 +L +K +G C++ +C Sbjct: 689 SEML-KKIGKRGPFLTCSAFPKCRNLQW 715 Score = 89.1 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 3/107 (2%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACD--YVRPLKSSADGHIVKV 58 K A + C KCG+ L+ ++G G +L C YP C Y + + Sbjct: 619 GKIAAAPRETDMKCDKCGSHLIKKTGFAGKQYLSCKNYPECKTLYNINKDGNKIIYPEPE 678 Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 C CG+ ++ + G+ G F+ C +P+C + + I Sbjct: 679 HTDIKCNKCGSEMLKKIGKRGPFLTCSAFPKCRNLQWIKTNKTPKSK 725 Score = 68.3 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 13/108 (12%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 + F ++ E + + +T+ CP C +V R SR F C YPEC+ Sbjct: 555 YKPFKKDLSEAEKNLQKQKVQAQQTSEICPNCGKN-MVIRYSRK-VQFLGCSGYPECKTT 612 Query: 138 INFKP----------IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 ++ +C +C L+ + A C + +C Sbjct: 613 LSLDKDGKIAAAPRETDMKCDKCGSHLIKKTGFAGKQYLSCKNYPECK 660 Score = 59.5 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA 66 + C KCG+E++ + GK GPFL CS +P C ++ +K++ ++ Sbjct: 676 EPEHTDIKCNKCGSEMLKKIGKRGPFLTCSAFPKCRNLQWIKTNKTPKSKTYKTVKLSEK 735 >UniRef50_UPI00006DC642 hypothetical protein CdifQ_04001409 n=1 Tax=Clostridium difficile QCD-32g58 RepID=UPI00006DC642 Length = 363 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 + + + ++C CG+N+V++ GRFG F+ C NYP+C+ T I + CP+ Sbjct: 230 ENIEKVNMDEETDEICENCGSNMVIKYGRFGKFMACKNYPDCKTTRPIMNK--IGVKCPK 287 Query: 109 CRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC 168 C G ++ R+S+ GK F+ C YP C F KP C +C ++EK T K C Sbjct: 288 CEEGDIILRKSKRGKAFYGCSNYPNCDFVAWNKPTGEFCEKCGS-YMVEKVTKSETKTVC 346 Query: 169 ASKQCGKPVSA 179 ++K+C K Sbjct: 347 SNKECNKETKE 357 Score = 92.2 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 17/131 (12%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 +E C CG+ +VI+ G+ G F+ C YP C RP+ + G CP C Sbjct: 238 DEETDEICENCGSNMVIKYGRFGKFMACKNYPDCKTTRPIMNKI---------GVKCPKC 288 Query: 68 -GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 +++LR+ + G F GC NYP C+ T C +C + + + KT Sbjct: 289 EEGDIILRKSKRGKAFYGCSNYPNCDFVAWNKP---TGEFCEKCGSYMVEKVTKSETKTV 345 Query: 126 HSCDRYPECQF 136 C EC Sbjct: 346 --CSN-KECNK 353 >UniRef50_D1Y390 DNA topoisomerase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y390_9BACT Length = 767 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQ 116 G+ CP CG LV +QGRFG FIGC +PEC + + + K + CP+C G +VQ Sbjct: 652 TGETCPQCGRPLVKKQGRFGDFIGCSGFPECHYIKPVQKE--IGVPCPKCGNEHGGQVVQ 709 Query: 117 RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQ 172 R+S+ G+TF+ C RYP+C + KP +CP C + ++ V CA K Sbjct: 710 RKSKKGRTFYGCSRYPDCDYVSWNKPAPEKCPLCGGLMEYVGRSRTPVCTKCAHKG 765 Score = 104 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 27/131 (20%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 E+CP+CG LV + G+ G F+GCS +P C Y++P++ G CP CG Sbjct: 650 ELTGETCPQCGRPLVKKQGRFGDFIGCSGFPECHYIKPVQKEI---------GVPCPKCG 700 Query: 69 AN----LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 +V R+ + G F GC YP+C++ E CP C G + Sbjct: 701 NEHGGQVVQRKSKKGRTFYGCSRYPDCDYVSWNKPAPE---KCPLCG-GLM--------- 747 Query: 124 TFHSCDRYPEC 134 + R P C Sbjct: 748 EYVGRSRTPVC 758 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 8/107 (7%) Query: 80 MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 F I E P+ T TCPQC LV+++ R+G F C +PEC + Sbjct: 630 PFTDAIAEAEKAPVVPPPPPELTGETCPQCGRP-LVKKQGRFG-DFIGCSGFPECHYIKP 687 Query: 140 -FKPIAGECPECHY----PLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 K I CP+C ++ K + C+ C + Sbjct: 688 VQKEIGVPCPKCGNEHGGQVVQRKSKKGRTFYGCSRYPDCDYVSWNK 734 >UniRef50_D1B572 DNA topoisomerase n=7 Tax=Campylobacterales RepID=D1B572_SULD5 Length = 694 Score = 134 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 13/140 (9%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-- 105 K+ V V G++CP CG LV R+GRFG FI C YP C++T+ + K E+A Sbjct: 560 KTEIQSQKVIVFTGEMCPECGKELVRRKGRFGEFIACSTYPTCKYTQNLKKVSESAPKEK 619 Query: 106 ------CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKK 159 CP+C G +++R SR GK F C YP+C+F N++P +CPEC Y ++ +++ Sbjct: 620 VTLSVPCPECG-GEIIERSSRRGK-FFGCGNYPKCKFISNYEPTDKKCPECGY-IMAKRE 676 Query: 160 TAQGVKHFCASKQCGKPVSA 179 + + C +C A Sbjct: 677 LRKKEIYECI--KCKHKEEA 694 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 9/135 (6%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE-G 61 +S V E CP+CG ELV R G+ G F+ CS YP C Y + LK ++ + + Sbjct: 564 QSQKVIVFTGEMCPECGKELVRRKGRFGEFIACSTYPTCKYTQNLKKVSESAPKEKVTLS 623 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP CG ++ R R G F GC NYP+C+ + T CP+C G+++ +R Sbjct: 624 VPCPECGGEIIERSSRRGKFFGCGNYPKCKFISNYEP---TDKKCPEC--GYIMAKRELR 678 Query: 122 GKTFHSCDRYPECQF 136 K + C +C+ Sbjct: 679 KKEIYECI---KCKH 690 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 15/102 (14%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG----- 145 + T CP+C LV+R+ R+G+ F +C YP C++ N K ++ Sbjct: 561 TEIQSQKVIVFTGEMCPECGK-ELVRRKGRFGE-FIACSTYPTCKYTQNLKKVSESAPKE 618 Query: 146 ------ECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 CPEC +IE+ + +G C + +C + E Sbjct: 619 KVTLSVPCPECG-GEIIERSSRRGKFFGCGNYPKCKFISNYE 659 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + V + CP+CG E++ RS + G F GC YP C ++ + Sbjct: 613 ESAPKEKVTLSVPCPECGGEIIERSSRRGKFFGCGNYPKCKFISNYE----------PTD 662 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEH 92 + CP CG + R+ R CI E Sbjct: 663 KKCPECGYIMAKRELRKKEIYECIKCKHKEE 693 >UniRef50_Q256J1 DNA topoisomerase I-fused to SWI domain n=18 Tax=Chlamydiales RepID=Q256J1_CHLFF Length = 862 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 10/148 (6%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLK---SSADGHIVK 57 ++ + V + C C +LV K+ F GCS+YP CD+ + + D + V+ Sbjct: 582 KEAVIPRVVTDIDCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVE 641 Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK-----PDETAITCPQ-CRT 111 CP CG + +R GRFG F+GC+NYP+C T + K E I CP + Sbjct: 642 TPWDSPCPVCGGEMKVRHGRFGTFLGCLNYPKCRGTISLHKKGEEVETEEPIPCPAIGCS 701 Query: 112 GHLVQRRSRYGKTFHSCDRYPECQFAIN 139 G + ++RSRY KTF+SC YP+C N Sbjct: 702 GKIFKKRSRYNKTFYSCSEYPDCSVIGN 729 Score = 91.8 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 24/141 (17%) Query: 56 VKVLEGQVCPACGA-NLVLRQGRFGMFIGCINYPECEHTELIDKPDET----------AI 104 +V+ C AC LV + F GC YPEC+ ++ Sbjct: 587 PRVVTDIDCSACHKGKLVKIWAKNRYFYGCSEYPECDFKTSEEELAFNKDDYAVETPWDS 646 Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG--------ECPE--CHYPL 154 CP C G + R R+G TF C YP+C+ I+ CP C + Sbjct: 647 PCPVCG-GEMKVRHGRFG-TFLGCLNYPKCRGTISLHKKGEEVETEEPIPCPAIGCSGKI 704 Query: 155 LIEKKTAQGVKHFCAS-KQCG 174 ++ + C+ C Sbjct: 705 FKKRSRYNKTFYSCSEYPDCS 725 Score = 87.2 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPA--CGA 69 + CP CG E+ +R G+ G FLGC YP C L G V+ E CPA C Sbjct: 645 DSPCPVCGGEMKVRHGRFGTFLGCLNYPKCRGTISLHKK--GEEVETEEPIPCPAIGCSG 702 Query: 70 NLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAIT 105 + ++ R+ F C YP+C T T Sbjct: 703 KIFKKRSRYNKTFYSCSEYPDCSVIGNTIDAVITKYT 739 >UniRef50_B5YFC7 DNA topoisomerase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YFC7_DICT6 Length = 694 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 8/142 (5%) Query: 38 YPACDYVRPLKSSADGHIVK-VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 YP+ S G I + CP CG LV+R+ + G + C YPEC++T+ I Sbjct: 549 YPSFKEELERVSKNFGKIQVVEKTDEFCPICGRELVIRENKHGKYYACSAYPECKYTKPI 608 Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 + CP C + ++ + GK F C YP C FA ++P+ +CP+C LL Sbjct: 609 YEEAH--GKCPLCGGIVVKKKARKTGKVFWGCINYPNCSFASPYEPLDEKCPQCGSVLL- 665 Query: 157 EKKTAQGVKHFCASKQCGKPVS 178 C+++ C V Sbjct: 666 ----KGNGFKKCSNENCNYIVW 683 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 21/133 (15%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + +E CP CG ELVIR KHG + CS YP C Y +P+ A G CP CG Sbjct: 570 EKTDEFCPICGRELVIRENKHGKYYACSAYPECKYTKPIYEEAHG---------KCPLCG 620 Query: 69 ANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFH 126 +V ++ R +F GCINYP C + CPQC + L G F Sbjct: 621 GIVVKKKARKTGKVFWGCINYPNCSFASPYEP---LDEKCPQCGSVLL------KGNGFK 671 Query: 127 SCDRYPECQFAIN 139 C C + + Sbjct: 672 KCSNE-NCNYIVW 683 >UniRef50_Q59046 DNA topoisomerase 1 n=9 Tax=Methanococcales RepID=TOP1_METJA Length = 761 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKCG +L++ K G F+GCS YP CD L I +VC AC + ++ Sbjct: 599 KCPKCGGDLILIRHKKGRFVGCSNYPECDVKYSLPDKGRIKIP----NKVCDACKSPIL- 653 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 + G CIN PEC + E CP+C ++++ F+ C YP+ Sbjct: 654 ---KIGDREICIN-PECPL--KQVEVKEEDRICPKCGAKLILKK--GVYGAFYGCSNYPK 705 Query: 134 CQFAINF--KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 C++ K + G+CP+C L++ ++ G C++ +C + Sbjct: 706 CKYTEPINKKEVVGKCPKCGGDLVV-REGKFGKFVGCSNYPKCRYTEKLK 754 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 8/101 (7%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + + CPKCGA+L+++ G +G F GCS YP C Y P+ Sbjct: 669 KQVEVKEEDRICPKCGAKLILKKGVYGAFYGCSNYPKCKYTEPINKKEVVG--------K 720 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 CP CG +LV+R+G+FG F+GC NYP+C +TE + ++ Sbjct: 721 CPKCGGDLVVREGKFGKFVGCSNYPKCRYTEKLKLNEKEEK 761 Score = 64.5 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 13/76 (17%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC--QFAINF----KPIAGECPECHYPLLIE 157 CP+C ++ R + F C YPEC ++++ K C C P+L Sbjct: 598 GKCPKCGGDLILIRHKK--GRFVGCSNYPECDVKYSLPDKGRIKIPNKVCDACKSPIL-- 653 Query: 158 KKTAQGVKHFCASKQC 173 G + C + +C Sbjct: 654 ---KIGDREICINPEC 666 >UniRef50_B9LRP1 DNA topoisomerase n=4 Tax=Halobacteriaceae RepID=B9LRP1_HALLT Length = 864 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 20/188 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + +L + CP+CG++L++R + G F+GC YP C+Y PL SS +L Sbjct: 625 QKSLKADKTLGPCPECGSDLLVRKSRQGSYFVGCDGYPDCEYTLPLPSS----GKPLLLD 680 Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQR 117 + C ++ + GR GC P+C+ E ++ DE CP+C G L + Sbjct: 681 ETCEEHELRHVKMLAGRKTFVHGC---PQCKADEADEQEDEVIGACPECGEEHGGELAIK 737 Query: 118 RSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHFCASK 171 R R G C RYP+C +++ C E P L + + C Sbjct: 738 RLRSGSRLVGCTRYPDCDYSLPLPRRGEIEVTDEICEEHGLPHLRVHSGDEPWELGC--P 795 Query: 172 QCGKPVSA 179 C Sbjct: 796 ICNYREFT 803 Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 +H + K D+T CP+C + LV R+SR G F CD YP+C++ + Sbjct: 616 SREAVGDHLQKSLKADKTLGPCPECGSDLLV-RKSRQGSYFVGCDGYPDCEYTLPLPSSG 674 Query: 145 GE------CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 C E + + H C QC + E Sbjct: 675 KPLLLDETCEEHELRHVKMLAGRKTFVHGC--PQCKADEADE 714 >UniRef50_C9RG81 DNA topoisomerase I n=2 Tax=Methanocaldococcus RepID=C9RG81_METVM Length = 928 Score = 132 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 19/168 (11%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKCG +L++ K F+GCS YP CD L I +VC AC + ++ Sbjct: 757 KCPKCGGDLILIRHKKSRFVGCSNYPECDVNYSLPDKGRIKIP----NKVCNACKSPIL- 811 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 + G CIN PEC + E CP+C ++++ F+ C YP+ Sbjct: 812 ---KIGDREICIN-PECPL--KQVEIKEEDRICPKCGAELILKK--GVYGAFYGCSNYPK 863 Query: 134 CQFAINFKPIAG----ECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 C++ +CP+C L++ ++ G C++ +C Sbjct: 864 CKYTEPINKKEKEIVGKCPKCGGDLVV-REGKFGKFIGCSNYPKCKYT 910 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 6/90 (6%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + + CPKCGAEL+++ G +G F GCS YP C Y P+ + Sbjct: 827 KQVEIKEEDRICPKCGAELILKKGVYGAFYGCSNYPKCKYTEPINKKEKEIV------GK 880 Query: 64 CPACGANLVLRQGRFGMFIGCINYPECEHT 93 CP CG +LV+R+G+FG FIGC NYP+C++T Sbjct: 881 CPKCGGDLVVREGKFGKFIGCSNYPKCKYT 910 Score = 65.2 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 13/76 (17%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF------KPIAGECPECHYPLLIE 157 CP+C ++ R + F C YPEC + K C C P+L Sbjct: 756 GKCPKCGGDLILIRHKK--SRFVGCSNYPECDVNYSLPDKGRIKIPNKVCNACKSPIL-- 811 Query: 158 KKTAQGVKHFCASKQC 173 G + C + +C Sbjct: 812 ---KIGDREICINPEC 824 >UniRef50_A3WII4 Zn-finger domain associated with topoisomerase type I n=2 Tax=Idiomarina RepID=A3WII4_9GAMM Length = 172 Score = 132 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 65/169 (38%), Positives = 92/169 (54%), Gaps = 7/169 (4%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CPKCG ELV++ FLGCS YP C+Y I G CP CG +L L+ Sbjct: 4 CPKCGRELVVKHKGQQSFLGCSGYPDCEYT--QGLREQSEIEPESLGVPCPQCGNDLQLK 61 Query: 75 QGRFGMFIGCINYPECEHT-ELIDKPDETAITCPQCR----TGHLVQRRSRYGKTFHSCD 129 GRFG+F+GC NYP+C+ E + ++ ++ CP+C TG +V + R GK F SCD Sbjct: 62 SGRFGLFVGCSNYPDCDFIAEDPTQREQDSVPCPECEKAGRTGRVVAKTGRSGKQFFSCD 121 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 ++P C F++ P+ CPEC +PLL+ K++ + C K C Sbjct: 122 QFPTCDFSLPLPPVNEACPECDFPLLMRKRSQGSERLVCPQKHCDYRSK 170 Score = 74.9 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 5/119 (4%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 +S + CP+CG +L ++SG+ G F+GCS YP CD++ + + V E Sbjct: 38 EQSEIEPESLGVPCPQCGNDLQLKSGRFGLFVGCSNYPDCDFIAEDPTQREQDSVPCPEC 97 Query: 62 QVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 + G +V + GR G F C +P C+ + + +E CP+C L+++RS Sbjct: 98 EKAGRTGR-VVAKTGRSGKQFFSCDQFPTCDFSLPLPPVNEA---CPECDFPLLMRKRS 152 >UniRef50_UPI0000E0DBED putative DNA topoisomerase; C4 zinc finger domain protein n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0DBED Length = 193 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 60/166 (36%), Positives = 95/166 (57%), Gaps = 4/166 (2%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C L IR FLGC+ YPAC+Y + L ++ I ++ CP C L ++ Sbjct: 27 CPDCSNPLQIRYANKSAFLGCTTYPACEYKKSLTDNSITTIKVMV-DTPCPQCDQTLAIK 85 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +GR+G+F+ C+++P C I +T ++CPQC TGHL+++ ++YGK F+SC+ YP C Sbjct: 86 KGRYGLFVSCVDFPTCNFIGSIKHQTDTKVSCPQCHTGHLLEKTNKYGKKFYSCNAYPNC 145 Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 +F +N KP+A CPEC ++IE + C C ++ + Sbjct: 146 KFVLNDKPVARTCPECQSTIMIESSA---TQLHCVKLTCHGVINND 188 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 12/107 (11%) Query: 12 NESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-AN 70 + CP+C L I+ G++G F+ C +P C+++ + CP C + Sbjct: 72 DTPCPQCDQTLAIKKGRYGLFVSCVDFPTCNFI-------GSIKHQTDTKVSCPQCHTGH 124 Query: 71 LVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 L+ + ++G F C YP C+ A TCP+C++ +++ Sbjct: 125 LLEKTNKYGKKFYSCNAYPNCKFVLNDKP---VARTCPECQSTIMIE 168 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 13/87 (14%) Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP---------IAGECPEC 150 E CP C ++ ++ F C YP C++ + + CP+C Sbjct: 21 FEAYGDCPDCSNPLQIRYANK--SAFLGCTTYPACEYKKSLTDNSITTIKVMVDTPCPQC 78 Query: 151 HYPLLIEKKTAQGVKHFCAS-KQCGKP 176 L I KK G+ C C Sbjct: 79 DQTLAI-KKGRYGLFVSCVDFPTCNFI 104 Score = 42.9 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 12/72 (16%) Query: 4 SALFTVRNNESCPKCG-AELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 S SCP+C L+ ++ K+G F C+ YP C +V K Sbjct: 106 SIKHQTDTKVSCPQCHTGHLLEKTNKYGKKFYSCNAYPNCKFVLNDK----------PVA 155 Query: 62 QVCPACGANLVL 73 + CP C + +++ Sbjct: 156 RTCPECQSTIMI 167 >UniRef50_B3EPW7 DNA topoisomerase n=12 Tax=Chlorobiaceae RepID=B3EPW7_CHLPB Length = 804 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 18/173 (10%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 L + E+C KCG +++I+ G FLGCS YPAC ++PL SS Sbjct: 587 NDPLLPQNTDAETCDKCGKGKMIIKWTASGKFLGCSSYPACKNIKPLASSRVR---PKET 643 Query: 61 GQVCPAC-GANLVLRQGRFGMFIGCINYPECEH----------TELIDKPDETAITCPQC 109 G C C +VLR GRFG F+ C YP+C P ET + CP+C Sbjct: 644 GIKCHGCENGRMVLRNGRFGPFLACTGYPDCNTLLKLDKQRKIEPPKTPPLETDLACPKC 703 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 + R + G + C ++P+C+ + + + H+ ++EK + Sbjct: 704 GAPLYL-RTGKRG-LWLGCSKFPKCRGRQAWGQLD-PAIQHHWQEIMEKHQGE 753 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 21/145 (14%) Query: 49 SSADGHIVKVLEGQVCPACGA-NLVLRQGRFGMFIGCINYPECEHTEL----IDKPDETA 103 D + + + + C CG ++++ G F+GC +YP C++ + +P ET Sbjct: 585 RKNDPLLPQNTDAETCDKCGKGKMIIKWTASGKFLGCSSYPACKNIKPLASSRVRPKETG 644 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP-------------IAGECPEC 150 I C C G +V R R+G F +C YP+C + CP+C Sbjct: 645 IKCHGCENGRMVLRNGRFG-PFLACTGYPDCNTLLKLDKQRKIEPPKTPPLETDLACPKC 703 Query: 151 HYPLLIEKKTAQGVKHFCAS-KQCG 174 P L + +G+ C+ +C Sbjct: 704 GAP-LYLRTGKRGLWLGCSKFPKCR 727 Score = 97.2 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Query: 1 MAKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL 59 +A S + C C +V+R+G+ GPFL C+ YP C+ + L K Sbjct: 633 LASSRVRPKETGIKCHGCENGRMVLRNGRFGPFLACTGYPDCNTLLKLDKQRKIEPPKTP 692 Query: 60 ---EGQVCPACGANLVLRQGRFGMFIGCINYPECE 91 CP CGA L LR G+ G+++GC +P+C Sbjct: 693 PLETDLACPKCGAPLYLRTGKRGLWLGCSKFPKCR 727 Score = 71.8 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 9/98 (9%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-------KPI 143 + + + A TC +C G ++ + + GK F C YP C+ K Sbjct: 585 RKNDPLLPQNTDAETCDKCGKGKMIIKWTASGK-FLGCSSYPACKNIKPLASSRVRPKET 643 Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 +C C ++ + G C C + + Sbjct: 644 GIKCHGCENGRMVLRNGRFGPFLACTGYPDCNTLLKLD 681 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK 57 + + + +CPKCGA L +R+GK G +LGCS++P C + Sbjct: 686 IEPPKTPPLETDLACPKCGAPLYLRTGKRGLWLGCSKFPKCRGRQAWGQLDPAIQHH 742 >UniRef50_A9BI47 DNA topoisomerase n=3 Tax=Thermotogaceae RepID=A9BI47_PETMO Length = 762 Score = 127 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 30/184 (16%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD--------- 52 K + ++ C KCG + + G++G +L C C + + + + Sbjct: 572 NKKEILHYESDVPCEKCGKNMKLNFGRYGLYLSCE---ECKETQKIPAESFGVTIKEKLY 628 Query: 53 ----------GHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 + + CP CG +L+L+ G+FG FI C NYPEC++T + Sbjct: 629 IKEYLQETLKIDKEENKIDEKCPICGGDLILKHGKFGEFIACSNYPECKYTRNVKAR--- 685 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 CP C G +V+ +S+ GKT+ C+ C +P CP C L + + Sbjct: 686 -GKCPNCG-GDIVKLKSKKGKTYFKCN---SCSTMYWNEPSEYSCPNCGETLFYKTSKGK 740 Query: 163 GVKH 166 + Sbjct: 741 EKLY 744 Score = 92.2 bits (227), Expect = 8e-18, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 28/158 (17%) Query: 46 PLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDK------- 98 I+ C CG N+ L GR+G+++ C E + Sbjct: 567 SNNIKNKKEILHYESDVPCEKCGKNMKLNFGRYGLYLSCEECKETQKIPAESFGVTIKEK 626 Query: 99 ----------------PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 ++ CP C G L+ + ++G+ F +C YPEC++ N K Sbjct: 627 LYIKEYLQETLKIDKEENKIDEKCPICG-GDLILKHGKFGE-FIACSNYPECKYTRNVK- 683 Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 G+CP C ++ K C S C E Sbjct: 684 ARGKCPNCGGDIVKLKSKKGKTYFKCNS--CSTMYWNE 719 >UniRef50_A8SJ74 DNA topoisomerase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ74_9FIRM Length = 703 Score = 125 bits (314), Expect = 7e-28, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 R S D I + + CP CG NLV+++ +FG FIGC +P+C + + +T Sbjct: 564 KRSEGDSEDYKIKDEVLDEKCPQCGKNLVIKKTKFGRFIGCSGFPDCNYI--KKEVKDTG 621 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI-AGECPECHYPLLIEKKTAQ 162 + CP+C G ++++ S+ K F+ C+ YPEC +AI KPI +C +C L+E K Sbjct: 622 VKCPKCG-GRIIEKISKKRKVFYGCENYPECDYAIWDKPIADKKCEKCGK-FLVEVKNRF 679 Query: 163 GVKHFCASKQCGKPVSAE 180 C+ + C + + Sbjct: 680 KHALKCSDENCDFEIDLK 697 Score = 105 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 + +E CP+CG LVI+ K G F+GCS +P C+Y++ G C Sbjct: 574 KIKDEVLDEKCPQCGKNLVIKKTKFGRFIGCSGFPDCNYIKKEVKD---------TGVKC 624 Query: 65 PACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 P CG ++ + + F GC NYPEC++ C +C LV+ ++R+ K Sbjct: 625 PKCGGRIIEKISKKRKVFYGCENYPECDYAIWDKPI--ADKKCEKCGK-FLVEVKNRF-K 680 Query: 124 TFHSCDRYPECQFAINFKPIAGE 146 C C F I+ K E Sbjct: 681 HALKCSDE-NCDFEIDLKKKKNE 702 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 + +F + E + + K + CPQC LV +++++G F C +P+C + Sbjct: 556 YAVFETFLKRSEGDSEDYKIKDEVLDEKCPQCGKN-LVIKKTKFG-RFIGCSGFPDCNYI 613 Query: 138 INF-KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 K +CP+C ++ + + V + C + +C + + Sbjct: 614 KKEVKDTGVKCPKCGGRIIEKISKKRKVFYGCENYPECDYAIWDK 658 >UniRef50_C1XZ86 Zn-finger domain-containing protein (Topoisomerase type I-like) (Fragment) n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ86_9DEIN Length = 301 Score = 125 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 + +CP CG + ++ + G FLGC+ YP C + L++ G+ C Sbjct: 5 EEVSRLPRRTCPVCGRPMEVKVSRFGQFLGCTGYPECRHTERLEAK----RAAEPIGEPC 60 Query: 65 PACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK 123 P C LV R GR+G FI C YPEC++ D+ T I CP+C G +VQ+ S+ GK Sbjct: 61 PKCHQGELVRRHGRYGSFISCSRYPECDY--SRDEAPSTGIECPKCHAGEIVQKISKRGK 118 Query: 124 TFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 ++ C+ C F + + C C + + K C++ C Sbjct: 119 PYYRCNN---CDFLSFDRVLESRCSICGWNEIQ----KGRDKTACSNPDCE 162 Score = 96.8 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL---IDKPDETAITC 106 V L + CP CG + ++ RFG F+GC YPEC HTE + C Sbjct: 1 EPFMEEVSRLPRRTCPVCGRPMEVKVSRFGQFLGCTGYPECRHTERLEAKRAAEPIGEPC 60 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP-IAGECPECHYPLLIEKKTAQG-V 164 P+C G LV+R RYG F SC RYPEC ++ + P ECP+CH +++K + +G Sbjct: 61 PKCHQGELVRRHGRYGS-FISCSRYPECDYSRDEAPSTGIECPKCHAGEIVQKISKRGKP 119 Query: 165 KHFCASKQ 172 + C + Sbjct: 120 YYRCNNCD 127 Score = 64.1 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 51/134 (38%), Gaps = 22/134 (16%) Query: 3 KSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 ++ E CPKC ELV R G++G F+ CS+YP CDY R G Sbjct: 48 EAKRAAEPIGEPCPKCHQGELVRRHGRYGSFISCSRYPECDYSRD---------EAPSTG 98 Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP C +V + + G Y C + + + C C + + R + Sbjct: 99 IECPKCHAGEIVQKISKRGK-----PYYRCNNCDFLSFDRVLESRCSICGWNEIQKGRDK 153 Query: 121 YGKTFHSCDRYPEC 134 +C P+C Sbjct: 154 T-----ACSN-PDC 161 >UniRef50_Q5V1P3 DNA topoisomerase I n=1 Tax=Haloarcula marismortui RepID=Q5V1P3_HALMA Length = 1364 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 19/185 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + +L + CPKCG ++++R + G F+GC +P C PL S+ +VLE Sbjct: 1123 QESLKADKTLGPCPKCGEDMLVRRSRQGSYFVGCDGFPECRNTLPLPST---GEPQVLED 1179 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQRR 118 ++ + GR GC P CE + + DE CP+C + G L + Sbjct: 1180 HCEEHDMHHVKMLAGRDTFVHGC---PRCEAEKADESEDEVIGPCPECGSEHDGDLAIKH 1236 Query: 119 SRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYP-LLIEKKTAQGVKHFCASK 171 R G C RYP+C +++ C E P L+I+ + + C Sbjct: 1237 LRSGSRLVGCTRYPDCDYSLPLPRNGDISVTEAFCEEHDLPELVIDADSDDPWELGC--P 1294 Query: 172 QCGKP 176 C Sbjct: 1295 ICNYE 1299 Score = 71.0 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 7/102 (6%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 EH + K D+T CP+C LV RRSR G F CD +PEC+ + Sbjct: 1114 SREEIGEHLQESLKADKTLGPCPKCGEDMLV-RRSRQGSYFVGCDGFPECRNTLPLPSTG 1172 Query: 145 GE------CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 C E + H C + K +E Sbjct: 1173 EPQVLEDHCEEHDMHHVKMLAGRDTFVHGCPRCEAEKADESE 1214 Score = 49.5 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%) Query: 2 AKSALFTVRNNESCPKCG----AELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIV 56 K+ CP+CG +L I+ + G +GC++YP CDY PL + D Sbjct: 1208 EKADESEDEVIGPCPECGSEHDGDLAIKHLRSGSRLVGCTRYPDCDYSLPLPRNGD---- 1263 Query: 57 KVLEGQVCPACGANLVLRQGRF--GMFIGC--INYPECE 91 + C ++ +GC NY E + Sbjct: 1264 ISVTEAFCEEHDLPELVIDADSDDPWELGCPICNYEEYQ 1302 >UniRef50_O83409 DNA topoisomerase 1 n=4 Tax=Treponema RepID=TOP1_TREPA Length = 731 Score = 123 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 4/126 (3%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC 109 ++ + VC CG +V + GRFG F+ C +PEC +T+ + C Sbjct: 577 NSMRGVFDEKTDVVCSQCGDTMVKKLGRFGFFLACGKFPECRNTQPVPLAKCPRPAC--- 633 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCA 169 G++V +++R K F+ C R+P C F +FKP CP+C L+ + G C Sbjct: 634 -DGNIVGKKTRGRKEFYGCTRFPVCDFVTHFKPTFAVCPQCRCFLVEKSNRRVGTYTACV 692 Query: 170 SKQCGK 175 + +C Sbjct: 693 NPECRY 698 Score = 98.0 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 16/138 (11%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 +F + + C +CG +V + G+ G FL C ++P C +P+ + P Sbjct: 582 VFDEKTDVVCSQCGDTMVKKLGRFGFFLACGKFPECRNTQPVPLAKCPR----------P 631 Query: 66 ACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKT 124 AC N+V ++ R F GC +P C+ CPQCR LV++ +R T Sbjct: 632 ACDGNIVGKKTRGRKEFYGCTRFPVCDFVTHFKPTFAV---CPQCRC-FLVEKSNRRVGT 687 Query: 125 FHSCDRYPECQFAINFKP 142 + +C PEC++ + Sbjct: 688 YTACVN-PECRYVSPTRK 704 >UniRef50_B8E2F6 DNA topoisomerase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2F6_DICTD Length = 696 Score = 122 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 8/143 (5%) Query: 38 YPACDYVRPLKSSADGHIV-KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 YPA S G I ++CP CG+ LV+R+ + G + C YPEC++T+ I Sbjct: 551 YPAFKEELEKVSKNIGKIQVIEKTDEICPLCGSKLVIRENKNGKYYACSRYPECKYTKPI 610 Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 + CP C + ++ + KTF C YPEC FA ++P+ +CP+C +L Sbjct: 611 YEE--AQGRCPLCGGVVVKKKAKKTKKTFWGCINYPECSFASPYEPLNEKCPQCGSTML- 667 Query: 157 EKKTAQGVKHFCASKQCGKPVSA 179 C++K C V Sbjct: 668 ----KGNGFKKCSNKDCNYIVWT 686 Score = 108 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 21/138 (15%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + +E CP CG++LVIR K+G + CS+YP C Y +P+ A G Sbjct: 567 KIQVIEKTDEICPLCGSKLVIRENKNGKYYACSRYPECKYTKPIYEEAQG---------R 617 Query: 64 CPACGA--NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP CG + F GCINYPEC + +E CPQC + L Sbjct: 618 CPLCGGVVVKKKAKKTKKTFWGCINYPECSFASPYEPLNE---KCPQCGSTML------K 668 Query: 122 GKTFHSCDRYPECQFAIN 139 G F C +C + + Sbjct: 669 GNGFKKCSN-KDCNYIVW 685 >UniRef50_A6G953 DNA topoisomerase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G953_9DELT Length = 891 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 17/160 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MA + CPKCGA R G++G FL C+ YP CDY P+ + + + Sbjct: 662 MAHAKAEIQPALYKCPKCGARTCYRFGRNGRFLSCTAYPECDYAAPIDRKGRPLLPERV- 720 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINY--------------PECEHTELIDKPDETAITC 106 V P G+++ LR GRFG F+ NY + + E I C Sbjct: 721 DIVSPEDGSSMELRNGRFGKFLASENYEKGSFVLNLDRKGNIKYPAIPPLVIDVEEGIQC 780 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 +C ++R +R + C R+P+C+ + +K + E Sbjct: 781 VKCDAPLNLRRGAR--GPWLGCSRFPKCRGRLAWKTLDEE 818 >UniRef50_D2LPU9 DNA topoisomerase I n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LPU9_9EURY Length = 764 Score = 121 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 23/174 (13%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 R CP G +L+ K + C Y + + CP CG Sbjct: 598 REIGECPD-GGKLIYLERK--RLVVCENDGETKYY-----NLPKTGHIEFLDKKCPICGL 649 Query: 70 NLV--LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 L+ +R+G+ I C+N ++ + CP+C G LV R+S+ GK F Sbjct: 650 PLIKIIRRGQSPE-IRCLN-----SKCEYNRKKDIVGKCPKCG-GDLVIRQSKNGKRFIG 702 Query: 128 CDRYPECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 C YP+C + P CP C PLLI +K + FC + +C Sbjct: 703 CSNYPKCDVTYSLPQRGKIIPTGEVCPYCGAPLLILRKKGKKDWKFCPNIKCEY 756 Score = 80.3 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 19/140 (13%) Query: 7 FTVRNNESCPKCGAELVIRSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 ++ CP CG L+ + P + C C+Y R CP Sbjct: 636 HIEFLDKKCPICGLPLIKIIRRGQSPEIRCLN-SKCEYNRKKDIVG-----------KCP 683 Query: 66 ACGANLVLRQGRFGM-FIGCINYPECEHTELIDKP---DETAITCPQCRTGHLVQRRSRY 121 CG +LV+RQ + G FIGC NYP+C+ T + + T CP C L+ R+ Sbjct: 684 KCGGDLVIRQSKNGKRFIGCSNYPKCDVTYSLPQRGKIIPTGEVCPYCGAPLLILRKKGK 743 Query: 122 GKTFHSCDRYPECQFAINFK 141 K + C +C++ K Sbjct: 744 -KDWKFCPNI-KCEYNRRNK 761 Score = 43.7 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 10/82 (12%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDR-----YPECQFAINFKPIAGECPECHYP 153 CP ++R K C+ Y + + + +CP C P Sbjct: 596 MRREIGECPDGGKLIYLER-----KRLVVCENDGETKYYNLPKTGHIEFLDKKCPICGLP 650 Query: 154 LLIEKKTAQGVKHFCASKQCGK 175 L+ + Q + C + +C Sbjct: 651 LIKIIRRGQSPEIRCLNSKCEY 672 >UniRef50_D1B6D6 DNA topoisomerase I n=3 Tax=Synergistaceae RepID=D1B6D6_THEAS Length = 708 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 6/98 (6%) Query: 51 ADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR 110 + L G+ CP CG L++R+GR+G FIGC YPEC+ T K T + CP+C Sbjct: 602 QRMTVPPELAGEDCPQCGRPLLIRRGRYGEFIGCSGYPECDFT--KRKETSTGVPCPKCG 659 Query: 111 TGHLVQRRSRYGK----TFHSCDRYPECQFAINFKPIA 144 G +V R++ GK TF+ C RYPEC + KP Sbjct: 660 QGTVVARKASKGKGKGRTFYGCSRYPECDYVSWSKPKG 697 Score = 97.6 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + + E CP+CG L+IR G++G F+GCS YP CD+ + + G Sbjct: 602 QRMTVPPELAGEDCPQCGRPLLIRRGRYGEFIGCSGYPECDFTK---------RKETSTG 652 Query: 62 QVCPACG-ANLVLR-----QGRFGMFIGCINYPECEHTELIDKP 99 CP CG +V R +G+ F GC YPEC++ Sbjct: 653 VPCPKCGQGTVVARKASKGKGKGRTFYGCSRYPECDYVSWSKPK 696 Score = 90.3 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 9/110 (8%) Query: 78 FGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 +G F + + P+ CPQC L+ RR RYG+ F C YPEC F Sbjct: 587 YGPFESRLQEVAASAQRMTVPPELAGEDCPQCGRPLLI-RRGRYGE-FIGCSGYPECDFT 644 Query: 138 INFKP-IAGECPECHYPLLIEK-----KTAQGVKHFCAS-KQCGKPVSAE 180 + CP+C ++ + K + C+ +C ++ Sbjct: 645 KRKETSTGVPCPKCGQGTVVARKASKGKGKGRTFYGCSRYPECDYVSWSK 694 >UniRef50_C8WG68 DNA topoisomerase type IA central domain protein n=9 Tax=Coriobacteriaceae RepID=C8WG68_EGGLE Length = 849 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 47/183 (25%), Positives = 68/183 (37%), Gaps = 26/183 (14%) Query: 14 SCPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L +R+ + F+GC+ +P CD PL + + CP CG Sbjct: 638 PCPKCGKDLQLRASQKTRSMFIGCAGWPDCDVTYPLPKGKVEAVPE-----PCPTCGMPQ 692 Query: 72 VLRQ-GRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT-----GHLVQRRSRYGKTF 125 V R CI+ P C +PD CP C+ + Q+ R K F Sbjct: 693 VKVTAFRSKPRTICID-PHCST---NQEPDVVVGECPACKEKGIQAKLIAQKNPRTLKRF 748 Query: 126 HSCDRYPECQFAINFKP------IAGECPECHYPLLIEKKTAQGVKHFCASKQC--GKPV 177 C+ Y +C C C P++I TA+G C + C + Sbjct: 749 IRCENYDDCGTGYPLPQYGALTATEEVCEHCGAPMVI-VTTARGPWKLCPNFDCPGKEQK 807 Query: 178 SAE 180 E Sbjct: 808 EDE 810 Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 5/76 (6%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP-----IAGECPECHYPLLIEK 158 CP+C ++ + F C +P+C + CP C P + Sbjct: 637 GPCPKCGKDLQLRASQKTRSMFIGCAGWPDCDVTYPLPKGKVEAVPEPCPTCGMPQVKVT 696 Query: 159 KTAQGVKHFCASKQCG 174 + C C Sbjct: 697 AFRSKPRTICIDPHCS 712 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 44/140 (31%), Gaps = 17/140 (12%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 E CP CG V + P + P S+ V V E C G Sbjct: 679 EAVPEPCPTCGMPQVKVTAFRSK-------PRTICIDPHCSTNQEPDVVVGECPACKEKG 731 Query: 69 --ANLVLRQGRFG--MFIGCINYPECEHTELIDK---PDETAITCPQCRTGHLVQRRSRY 121 A L+ ++ FI C NY +C + + T C C ++ +R Sbjct: 732 IQAKLIAQKNPRTLKRFIRCENYDDCGTGYPLPQYGALTATEEVCEHCGAPMVIVTTAR- 790 Query: 122 GKTFHSCDRYPECQFAINFK 141 + C + +C + Sbjct: 791 -GPWKLCPNF-DCPGKEQKE 808 >UniRef50_Q9HM08 DNA topoisomerase 1 n=4 Tax=Thermoplasmatales RepID=TOP1_THEAC Length = 770 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 22/170 (12%) Query: 15 CP-KCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV- 72 CP G ++++ + + C P+C +K + L Q CP CG ++ Sbjct: 590 CPFHEGKKIMVIRDRFTYTVRCED-PSCKINFRIKRNGSIT----LSDQKCPVCGLPMIK 644 Query: 73 -LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 +R+G+ I CI+ P+C + ++ +E CP G LV R+S+YGK F C Y Sbjct: 645 IIRKGQSPE-IKCID-PDCSY----NRENEDYGECPA-DHGRLVLRQSKYGKRFLGCSNY 697 Query: 132 PECQFAINFK------PIAGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 P+C CP C P+L + + FC + QC Sbjct: 698 PKCTVTYPLPQMGRITKTGEVCPYCGAPILALSRNGRK-WKFCPNMQCEY 746 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 22/138 (15%) Query: 11 NNESCPKCGAELVIRSGKHGPF--LGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 +++ CP CG ++ + G + C P C Y R + + CPA Sbjct: 631 SDQKCPVCGLPMIKII-RKGQSPEIKCID-PDCSYNR-----------ENEDYGECPADH 677 Query: 69 ANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAIT---CPQCRTGHLVQRRSRYGKT 124 LVLRQ ++G F+GC NYP+C T + + T CP C L SR G+ Sbjct: 678 GRLVLRQSKYGKRFLGCSNYPKCTVTYPLPQMGRITKTGEVCPYCGAPILAL--SRNGRK 735 Query: 125 FHSCDRYPECQFAINFKP 142 + C +C++ KP Sbjct: 736 WKFCPNM-QCEYNKKRKP 752 Score = 70.6 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 19/111 (17%) Query: 14 SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP LV+R K+G FLGCS YP C PL G+VCP CGA ++ Sbjct: 672 ECPADHGRLVLRQSKYGKRFLGCSNYPKCTVTYPLPQMGR----ITKTGEVCPYCGAPIL 727 Query: 73 L--RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 R GR F + + P+ V+++ R Sbjct: 728 ALSRNGRKWKF------------CPNMQCEYNKKRKPEAAVEKSVRKKGRN 766 >UniRef50_A4P0V4 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4P0V4_HAEIN Length = 154 Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 62/125 (49%), Positives = 77/125 (61%), Gaps = 2/125 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 M +S + E CP+CGA L I+ GK G FLGCS YP CDY+RPL+ H V Sbjct: 1 MNQSLFHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQR--VEHKVLKTL 58 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 ++CP CG L L+QG FGMFIGC +YPEC+ + E I CP+C+TGHL+ RR R Sbjct: 59 DEICPKCGNLLQLKQGSFGMFIGCSHYPECDFVVREESESEEKIACPECKTGHLISRRGR 118 Query: 121 YGKTF 125 GK F Sbjct: 119 QGKIF 123 Score = 79.9 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 10/120 (8%) Query: 55 IVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-----CPQC 109 + + CP CGA L ++QG+ G+F+GC YPEC++ + + + + CP+C Sbjct: 6 FHHSKQQEYCPQCGAPLQIKQGKKGLFLGCSAYPECDYLRPLQRVEHKVLKTLDEICPKC 65 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAIN---FKPIAGECPECHYPLLIEKKTAQGVKH 166 L ++ +G F C YPEC F + CPEC LI ++ QG Sbjct: 66 GN-LLQLKQGSFG-MFIGCSHYPECDFVVREESESEEKIACPECKTGHLISRRGRQGKIF 123 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 12/89 (13%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN--------FKPIAGECPE 149 + CPQC +++ + F C YPEC + K + CP+ Sbjct: 7 HHSKQQEYCPQCGAPLQIKQGKK--GLFLGCSAYPECDYLRPLQRVEHKVLKTLDEICPK 64 Query: 150 CHYPLLIEKKTAQGVKHFCAS-KQCGKPV 177 C LL K+ + G+ C+ +C V Sbjct: 65 CGN-LLQLKQGSFGMFIGCSHYPECDFVV 92 >UniRef50_Q12Y06 DNA topoisomerase n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12Y06_METBU Length = 780 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 14/179 (7%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + C +C L I S G F+GC+ YP C PL + + + Sbjct: 598 EAVEADKKSHIGKCNECERVLRIVSTDKGRFVGCTGYPQCKNTFPLPKTGALAVQRSRT- 656 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 C GA ++ ++ +G C+ + P E CP C + Sbjct: 657 --CKKGGAAVLKVGSKYFWAVGIGPCFSCDMEK-ECYPPEIVGECPACDGQTFLITT--K 711 Query: 122 GKTFHSCDRYPECQFAINFKP------IAGECPECHYPLLIEKKTAQGVKHFCASKQCG 174 F C C + C C + LL K+ + K +CA+++C Sbjct: 712 DSRFLGCT--KRCGHTQSVPKNGRLTITDKVCEGCGWRLLRVKEQGKDAKEYCANRKCE 768 >UniRef50_A8F3N1 DNA topoisomerase n=2 Tax=Thermotogaceae RepID=A8F3N1_THELT Length = 722 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 26/189 (13%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP----------LKSSA 51 K + N C C ++ ++ G++G +L C C + Sbjct: 547 QKWLSIDMNTNLEC-DCKSKYKLKVGRYGLYLLCEN---CSKTTSLALETPAVFYENTMY 602 Query: 52 DGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT 111 H K VCP CG L GR+G +I C N + CP+C + Sbjct: 603 FTHQEKESIETVCPVCGGKLEQMSGRYGNYIKCQNCGK-------TYTGFARGKCPKC-S 654 Query: 112 GHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASK 171 + ++ S+ + F C C F +P CPEC L +K +C + Sbjct: 655 AVVEKKISKNKRIFFKCTSD-NCDFISWLEPSNETCPECSQRLYYKKY-RSKEVLYCQN- 711 Query: 172 QCGKPVSAE 180 C K + Sbjct: 712 -CKKTFQLK 719 >UniRef50_A4JTK7 DNA topoisomerase n=2 Tax=Burkholderiales RepID=A4JTK7_BURVG Length = 893 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 7/127 (5%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 N CP C + SG +G F C+ C + + V + Q CP C ++ Sbjct: 736 NPVHCPVCEKLMRRISGANGHFWSCTDRENCKTTLDDSAG---NPVPKVAAQPCPKCSSD 792 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT----CPQCRTGHLVQRRSRYGKTFH 126 + +G+ G F C + C++T CP C + R F Sbjct: 793 MNRVRGKKGYFWSCTDREGCKNTMDDKDGAPVTRPDPIACPDCGAQMFRRERRDKKGYFW 852 Query: 127 SCDRYPE 133 C + + Sbjct: 853 GCSAFKK 859 Score = 94.5 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 45/155 (29%), Gaps = 14/155 (9%) Query: 27 GKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCIN 86 F C + V CP C + G G F C + Sbjct: 703 NSKKKFTACLRLNDEHKVEFFFDETVNTTDASGNPVHCPVCEKLMRRISGANGHFWSCTD 762 Query: 87 YPECEHTEL----IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK- 141 C+ T P A CP+C + R + F SC C+ ++ K Sbjct: 763 RENCKTTLDDSAGNPVPKVAAQPCPKCSSDMNRVRGKK--GYFWSCTDREGCKNTMDDKD 820 Query: 142 ------PIAGECPECHYPLLIE-KKTAQGVKHFCA 169 P CP+C + ++ +G C+ Sbjct: 821 GAPVTRPDPIACPDCGAQMFRRERRDKKGYFWGCS 855 Score = 43.7 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Query: 8 TVRNNESCPKCGAEL--VIRSGKHGPFLGCSQYPA 40 T + +CP CGA++ R K G F GCS + Sbjct: 825 TRPDPIACPDCGAQMFRRERRDKKGYFWGCSAFKK 859 >UniRef50_Q18KP8 DNA topoisomerase n=6 Tax=Halobacteriaceae RepID=Q18KP8_HALWD Length = 857 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 33/198 (16%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + ++ + CP+C +L+ R + G F+GC YP C+Y PL S+ + Sbjct: 604 QRSMKADKTIGPCPQCEGDLITRKSQAGSHFIGCDSYPDCEYTLPLPST----GKPHILE 659 Query: 62 QVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT---GHLVQR 117 VC + + G+ GC P CE ++ D TCP+C G L + Sbjct: 660 TVCDVHNLQQIKMLAGKRSFVHGC---PLCEAEAADEQADRVIGTCPECNAHADGELAIK 716 Query: 118 RSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLI-------------EK 158 R R G C RYP+C++++ C E P L K Sbjct: 717 RLRSGSRLVGCTRYPDCEYSLPLPRQGEIDVTDNICDEHALPALQILEADENTTKDKTTK 776 Query: 159 KTAQGVKHFCASKQCGKP 176 ++ + C C Sbjct: 777 ESDDIWELGC--PICNYR 792 Score = 64.5 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 9/96 (9%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE---- 146 +H + K D+T CPQC G L+ R+S+ G F CD YP+C++ + Sbjct: 601 DHLQRSMKADKTIGPCPQC-EGDLITRKSQAGSHFIGCDSYPDCEYTLPLPSTGKPHILE 659 Query: 147 --CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 C + + + H C C + E Sbjct: 660 TVCDVHNLQQIKMLAGKRSFVHGC--PLCEAEAADE 693 >UniRef50_Q46AN3 DNA topoisomerase n=3 Tax=Methanosarcina RepID=Q46AN3_METBF Length = 855 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 14/168 (8%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 +C CG L I G F+GC+ YP C PL + +++ E C G ++ Sbjct: 630 TCKACGHVLRIVQTDSGRFVGCTGYPDCRNSYPLPKAGALTVLRSKE---CKKGGVAVLK 686 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 ++ +G C+ + P ET CP+C + + F C Sbjct: 687 VGNKYNWAVGIGPCFTCDLEK-ECYPPETVGPCPECDGSMFLI--NFKDTRFLGCT--KR 741 Query: 134 CQFAINFKPI------AGECPECHYPLLIEKKTAQGVKHFCASKQCGK 175 C + + C C + L K + + FC +++C + Sbjct: 742 CGYTHSVPKTGKLTILDKTCETCGWKLFRLKDGDRPEEEFCINRRCTE 789 Score = 46.8 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 7/81 (8%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG- 68 CP+C + + + K FLGC+ C Y + + + + C CG Sbjct: 713 ETVGPCPECDGSMFLINFKDTRFLGCT--KRCGYTHSVPKT----GKLTILDKTCETCGW 766 Query: 69 ANLVLRQGRFGMFIGCINYPE 89 L+ G CIN Sbjct: 767 KLFRLKDGDRPEEEFCINRRC 787 >UniRef50_A1U3N5 DNA topoisomerase n=6 Tax=Gammaproteobacteria RepID=A1U3N5_MARAV Length = 722 Score = 104 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CPKC A +V R GK G F C++YPAC RPL+ CP C + Sbjct: 625 TAIHCPKCRAPMVEREGKFGAFFACTRYPACKGTRPLEDHQPEDGTSQKP-VPCPHCFSP 683 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 LV R+ G F GC N+P C T Sbjct: 684 LVRRKSNKGWFWGCSNFPGCRQTVDDHNGRP 714 Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 ++ ++ + CP C A +V R+G+FG F C YP C+ T ++ Sbjct: 607 GFMAQAPAAGLANTETPGTAIHCPKCRAPMVEREGKFGAFFACTRYPACKGTRPLEDHQP 666 Query: 102 TAI------TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 CP C + LV+R+S G F C +P C+ ++ Sbjct: 667 EDGTSQKPVPCPHCFSP-LVRRKSNKG-WFWGCSNFPGCRQTVDD 709 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 13/84 (15%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---------PIAGECPECHYPLLI 156 CP+CR +V+R ++G F +C RYP C+ + CP C PL+ Sbjct: 629 CPKCRAP-MVEREGKFG-AFFACTRYPACKGTRPLEDHQPEDGTSQKPVPCPHCFSPLVR 686 Query: 157 EKKTAQGVKHFCAS-KQCGKPVSA 179 K + +G C++ C + V Sbjct: 687 RK-SNKGWFWGCSNFPGCRQTVDD 709 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 + T + CP C + LV R G F GCS +P C + ++ Sbjct: 665 QPEDGTSQKPVPCPHCFSPLVRRKSNKGWFWGCSNFPGCRQTVDDHNGRPAVDLRNST 722 >UniRef50_A6VXG1 DNA topoisomerase type IA zn finger domain protein n=2 Tax=Marinomonas RepID=A6VXG1_MARMS Length = 171 Score = 99 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CPKC + LV++ G +G F GC YP C+Y ++ + +CPAC + L Sbjct: 37 RCPKCESLLVLKEGANGAFWGCESYPVCNYTANNENG----KPVRAKRYLCPACQSPLRR 92 Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRT-GHLVQRRSRYGKTFHSCDRYP 132 + + F GC NYPEC+ T D ++ CR GH + R+ F C YP Sbjct: 93 KAFKDNAFWGCSNYPECKVTVEDDNGVPSSTKKYPCRACGHYLVRKKSKNGYFWGCITYP 152 Query: 133 ECQFAINFKP 142 C +N Sbjct: 153 VCTNTLNDDK 162 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 13/143 (9%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-- 105 S D HI CP C + LVL++G G F GC +YP C +T + Sbjct: 22 DQSDDAHIKSAKIRYRCPKCESLLVLKEGANGAFWGCESYPVCNYTANNENGKPVRAKRY 81 Query: 106 -CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI------NFKPIAGECPECHYPLLIEK 158 CP C++ ++R++ F C YPEC+ + C C + L+ K Sbjct: 82 LCPACQSP--LRRKAFKDNAFWGCSNYPECKVTVEDDNGVPSSTKKYPCRACGH-YLVRK 138 Query: 159 KTAQGVKHFC-ASKQCGKPVSAE 180 K+ G C C ++ + Sbjct: 139 KSKNGYFWGCITYPVCTNTLNDD 161 >UniRef50_Q9JN65 DNA topoisomerase 1 n=2 Tax=Mycoplasma gallisepticum RepID=TOP1_MYCGA Length = 719 Score = 99.5 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 9/112 (8%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP---- 99 V + V+ +EG+ CP C + LV R+GR+G F+GC N+P+C+ E ++ Sbjct: 600 VLNEAKTNIVKKVEYIEGKNCPNCSSQLVRREGRYGPFVGCSNFPKCKFIEKSEQKAKEI 659 Query: 100 -DETAITCPQCRTGHLVQRRSRYGK----TFHSCDRYPECQFAINFKPIAGE 146 E + C C + + + G+ TF C +P+C++ + +P E Sbjct: 660 VYEEGVKCELCHAKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDE 711 Score = 95.7 bits (236), Expect = 7e-19, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 ++CP C ++LV R G++GPF+GCS +P C ++ KS + EG Sbjct: 609 VKKVEYIEGKNCPNCSSQLVRREGRYGPFVGCSNFPKCKFIE--KSEQKAKEIVYEEGVK 666 Query: 64 CPACGANLVLRQGRF------GMFIGCINYPECEHTELIDKPDETAIT 105 C C A L+ R + F+GC N+P+C++T+ ++ + I Sbjct: 667 CELCHAKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDETIR 714 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 16/107 (14%) Query: 88 PECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG-- 145 E + + CP C + LV+R RYG F C +P+C+F + A Sbjct: 602 NEAKTNIVKKVEYIEGKNCPNCSS-QLVRREGRYG-PFVGCSNFPKCKFIEKSEQKAKEI 659 Query: 146 ------ECPECHYPLLIEKKTAQG-----VKHFCAS-KQCGKPVSAE 180 +C CH L+ +G C++ +C S E Sbjct: 660 VYEEGVKCELCHAKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLE 706 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 2 AKSALFTVRNNESCPKCGAELVIR------SGKHGPFLGCSQYPACDYVRPLKSSADG 53 K+ C C A+L+ R K FLGCS +P C Y + L+ D Sbjct: 654 QKAKEIVYEEGVKCELCHAKLIRRVAKKKGRNKDNTFLGCSNFPKCKYTKSLEPEKDE 711 >UniRef50_Q6XZ01 DNA topoisomerase n=2 Tax=Spiroplasma RepID=Q6XZ01_SPIKU Length = 664 Score = 99.5 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQC 109 I G CP CG +LV R G++G FI C +P+C + + CP+C Sbjct: 553 ELMEEIPVEKSGIECPECGNDLVYRYGKYGKFIACSGFPKCHYI---HQTGPKFGPCPEC 609 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 G ++ + ++ + F +C YP C + ++K Sbjct: 610 GVGEIILKFNKRRQRFKACTNYPNCNYTDSYK 641 Score = 88.7 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 12/98 (12%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 + ++ CP+CG +LV R GK+G F+ CS +P C Y+ Sbjct: 556 EEIPVEKSGIECPECGNDLVYRYGKYGKFIACSGFPKCHYIHQTGPKFG----------P 605 Query: 64 CPACGAN--LVLRQGRFGMFIGCINYPECEHTELIDKP 99 CP CG ++ R F C NYP C +T+ + Sbjct: 606 CPECGVGEIILKFNKRRQRFKACTNYPNCNYTDSYKEE 643 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYP 153 +++ I CP+C LV R +YGK F +C +P+C + P G CPEC Sbjct: 555 MEEIPVEKSGIECPECGN-DLVYRYGKYGK-FIACSGFPKCHYIHQTGPKFGPCPECGVG 612 Query: 154 LLIEK-KTAQGVKHFCAS-KQCGKPVS 178 +I K + C + C S Sbjct: 613 EIILKFNKRRQRFKACTNYPNCNYTDS 639 >UniRef50_B1M9R9 DNA topoisomerase I n=4 Tax=root RepID=B1M9R9_METRJ Length = 788 Score = 98.4 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 25/186 (13%) Query: 14 SCPKCGAELVIRSGKHGP--FLGCSQ-YPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CPKCG + R K G F C+ C + CP CG Sbjct: 575 KCPKCGTGM-RRYAKPGKSPFWRCTAEAETCGHYMDDDKG----KPVERTAHPCPRCGET 629 Query: 71 LVL--RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV-----QRRSRYGK 123 L R+ G+ C + + TC +C + + Sbjct: 630 LRRFKRKNGGGLVWVCPAEACETFLDDVGGKPVALHTCTKCNAPLRRYQKKDRETGKPTG 689 Query: 124 TF-HSCDRYPECQFAINFKP------IAGECPECHYPLLIEKKTAQGVKHFCAS--KQCG 174 F C C+ ++ CP+C + +K G C+ + C Sbjct: 690 AFGWFCTDTENCKTFMDDDKGRPVAIKTAPCPKCGKAM-YRRKGDHGFWWGCSGYREGCK 748 Query: 175 KPVSAE 180 + + Sbjct: 749 TIMDDD 754 Score = 80.3 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 48/160 (30%), Gaps = 30/160 (18%) Query: 6 LFTVRNNESCPKCGAELV--IRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 R CP+CG L R G C AC+ + Sbjct: 614 KPVERTAHPCPRCGETLRRFKRKNGGGLVWVCPA-EACETFLDDVGGKPVAL------HT 666 Query: 64 CPACGANLVLRQ----------GRFGMFIGCINYPECEHTELIDKPDETAIT---CPQCR 110 C C A L Q G FG F C + C+ DK AI CP+C Sbjct: 667 CTKCNAPLRRYQKKDRETGKPTGAFGWF--CTDTENCKTFMDDDKGRPVAIKTAPCPKCG 724 Query: 111 TGHLVQRRSRYGKTFHSCDRYPE-CQFAINF---KPIAGE 146 RR + C Y E C+ ++ KP+ Sbjct: 725 KAMY--RRKGDHGFWWGCSGYREGCKTIMDDDKGKPVPRA 762 Score = 63.3 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGK-TFHSCD-------RYPECQFAINFKPIAGECPEC 150 CP+C TG +R ++ GK F C Y + + A CP C Sbjct: 569 EFTPRFKCPKCGTGM--RRYAKPGKSPFWRCTAEAETCGHYMDDDKGKPVERTAHPCPRC 626 Query: 151 HYPLLI-EKKTAQGVKHFCASKQCG 174 L ++K G+ C ++ C Sbjct: 627 GETLRRFKRKNGGGLVWVCPAEACE 651 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 12/104 (11%) Query: 13 ESCPKCGAELVIRSGKH-------GPF-LGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 +C KC A L K G F C+ C ++ C Sbjct: 665 HTCTKCNAPLRRYQKKDRETGKPTGAFGWFCTDTENCKTFMDDDKG----RPVAIKTAPC 720 Query: 65 PACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 P CG + R+G G + GC Y E T + D + + Sbjct: 721 PKCGKAMYRRKGDHGFWWGCSGYREGCKTIMDDDKGKPVPRAAK 764 >UniRef50_C4NUW5 DNA topoisomerase n=12 Tax=Gammaproteobacteria RepID=C4NUW5_ECOLX Length = 730 Score = 98.4 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 7/109 (6%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 MAK+ + C CG E+ GK+G F GC AC P + + Sbjct: 623 MAKAFEGAKPPSHECFNCGGEMHRIKGKNGFFWGCQN-EACKKTFPDNRGKPEKRIAAED 681 Query: 61 GQVCPACGANLVLRQG------RFGMFIGCINYPECEHTELIDKPDETA 103 CP CG+ + LR+G R F GC YP+C+ T K D Sbjct: 682 CPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGTMPFKKSDFMD 730 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 12/97 (12%) Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT-------CPQCRT 111 C CG + +G+ G F GC N C+ T ++ CP C + Sbjct: 632 PPSHECFNCGGEMHRIKGKNGFFWGCQNEA-CKKTFPDNRGKPEKRIAAEDCPDCPDCGS 690 Query: 112 GHLVQR----RSRYGKTFHSCDRYPECQFAINFKPIA 144 +++ + F C YP+C+ + FK Sbjct: 691 PMRLRKGKAPGKKRASKFWGCTAYPDCKGTMPFKKSD 727 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 19/92 (20%) Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF---KPIAG-------ECPEC 150 + C C G + + + + G F C C+ KP +CP+C Sbjct: 632 PPSHECFNCG-GEMHRIKGKNG-FFWGCQNE-ACKKTFPDNRGKPEKRIAAEDCPDCPDC 688 Query: 151 HYPLLIEK-----KTAQGVKHFCA-SKQCGKP 176 P+ + K K C C Sbjct: 689 GSPMRLRKGKAPGKKRASKFWGCTAYPDCKGT 720 Score = 41.4 bits (95), Expect = 0.014, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%) Query: 141 KPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 KP + EC C + K G C ++ C K Sbjct: 631 KPPSHECFNCGGEM-HRIKGKNGFFWGCQNEACKKTFPD 668 >UniRef50_UPI0001C41D8C DNA topoisomerase I TopA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D8C Length = 741 Score = 96.8 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query: 14 SCPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 C CG +L+ R F+GCS +P C L A+ CP CG + Sbjct: 590 EC-SCGGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKK------TCPTCGLPM 642 Query: 72 V--LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 + + G C++ C + E CP+C L +RS F C Sbjct: 643 ISIKKASGKGRDHVCLD-SNCGKDVSRRQAPEVVGKCPECGKDLL--KRSGRYGEFVGCS 699 Query: 130 RYPECQFAINFKPIA 144 +P C+F + + Sbjct: 700 GFPRCRFTCSVDELN 714 Score = 72.6 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 7/120 (5%) Query: 67 CGANLVLRQGRFGM--FIGCINYPECEHTELIDKPDETAIT-CPQCRTGHLVQRRSRYGK 123 CG L+ R F+GC N+P+C+ T + K CP C + +++ Sbjct: 593 CGGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKKTCPTCGLPMISIKKASGKG 652 Query: 124 TFHSC--DRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 H C + + G+CPEC LL ++ G C+ +C S + Sbjct: 653 RDHVCLDSNCGKDVSRRQAPEVVGKCPECGKDLL-KRSGRYGEFVGCSGFPRCRFTCSVD 711 Score = 70.3 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 108 QCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----IAGECPECHYPLL-IEKKTAQ 162 C + + R TF C +P+C+ + + CP C P++ I+K + + Sbjct: 592 SCGGKLIKRYSPRTKNTFVGCSNFPKCKVTYSLPKGANMLKKTCPTCGLPMISIKKASGK 651 Query: 163 GVKHFCASKQCGKPVS 178 G H C CGK VS Sbjct: 652 GRDHVCLDSNCGKDVS 667 Score = 60.2 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 27/50 (54%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV 63 CP+CG +L+ RSG++G F+GCS +P C + + + K E Sbjct: 677 KCPECGKDLLKRSGRYGEFVGCSGFPRCRFTCSVDELNNLGKDKNKEDVK 726 >UniRef50_O27661 DNA topoisomerase 1 n=4 Tax=Methanobacteriaceae RepID=TOP1_METTH Length = 718 Score = 96.1 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 18/150 (12%) Query: 1 MAKSALFTVRNNE---SCPKCGAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHI 55 + K +++ CP CG +LVI+ F+GCS YP C V L Sbjct: 581 IGKELYRAYQDSRVVGECPACGGKLVIKYSPRNRSTFVGCSSYPDCRTVYSLPRG----- 635 Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 + +C CG + + GR C++ P+C + + CP+C + L+ Sbjct: 636 -ASVLKSLCEKCGLPM-ISYGRPRQR-ACLD-PKCGKKKSEVEE--VVGKCPECGS-DLI 688 Query: 116 QRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 +R RYG+ F C +P+C+F + + Sbjct: 689 KRSGRYGE-FVGCKGFPKCRFTCSVDEVPE 717 Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 11/143 (7%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGR--FGMFIGCINYPECEHTELIDKPD 100 +R + CPACG LV++ F+GC +YP+C + + Sbjct: 577 NLRDIGKELYRAYQDSRVVGECPACGGKLVIKYSPRNRSTFVGCSSYPDCRTVYSLPRGA 636 Query: 101 ETAIT-CPQCRTGHLVQRRSRYGKTFHSCDRYPEC-QFAINFKPIAGECPECHYPLLIEK 158 + C +C + R R +C P+C + + + G+CPEC L+ ++ Sbjct: 637 SVLKSLCEKCGLPMISYGRPRQR----ACLD-PKCGKKKSEVEEVVGKCPECGSDLI-KR 690 Query: 159 KTAQGVKHFCAS-KQCGKPVSAE 180 G C +C S + Sbjct: 691 SGRYGEFVGCKGFPKCRFTCSVD 713 >UniRef50_C4L6T7 UvrD/REP helicase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6T7_EXISA Length = 964 Score = 94.9 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 10/107 (9%) Query: 1 MAKSALFTVRNNESCPKC-GAELVIR--SGKHGPFLGCSQYPACDYVRPLKSSADGHIVK 57 M ++R+N CP+C LVIR + + F+GCS YP CDY H Sbjct: 859 MGIEERKSIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTAN-------HPSI 911 Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 + + VCP+C LVLR G+ G F GC+N+P C+HT + D+ Sbjct: 912 IHDPIVCPSCRGYLVLRDGKNGKFYGCLNFPLCKHTMEREDVDQMKR 958 Score = 84.5 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPAC-GANLVLR--QGRFGMFIGCINYPECEHTELIDK 98 + + + CP C +LV+R R F+GC +YP C++T Sbjct: 851 KEQQVPYEMGIEERKSIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTANHPS 910 Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 I CP CR G+LV R + GK F+ C +P C+ + + + Sbjct: 911 IIHDPIVCPSCR-GYLVLRDGKNGK-FYGCLNFPLCKHTMEREDVDQ 955 Score = 84.1 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 6/90 (6%) Query: 96 IDKPDETAITCPQCRTGHLVQR-RSRYGKTFHSCDRYPECQFAINFKPI---AGECPECH 151 K CP+C GHLV R ++ TF C YP C + N I CP C Sbjct: 863 ERKSIRDNPKCPRCLDGHLVIREQTNRKSTFVGCSHYPGCDYTANHPSIIHDPIVCPSCR 922 Query: 152 YPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 L+ + G + C + C + E Sbjct: 923 G-YLVLRDGKNGKFYGCLNFPLCKHTMERE 951 >UniRef50_Q8EVZ3 DNA topoisomerase n=1 Tax=Mycoplasma penetrans RepID=Q8EVZ3_MYCPE Length = 707 Score = 94.5 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 3/105 (2%) Query: 39 PACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELI 96 P D I G+ CP CG +L+ ++ R G FIGC YPEC H E + Sbjct: 570 PGFDEEVKKAYDTMEKISDEKVGRECPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPL 629 Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 +KP+E I+CP+C + L++R+S+ + F C +P+C + I+ K Sbjct: 630 EKPEELEISCPECGS-KLLKRKSKRQQVFVGCSSWPKCNYIISDK 673 Score = 89.9 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG---ECPE 149 T ++ CP+C L +R R G F C YPEC + CPE Sbjct: 582 TMEKISDEKVGRECPKCGKDLLYKRARRGGSKFIGCSGYPECTHLEPLEKPEELEISCPE 641 Query: 150 CHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 C LL K Q V C+S +C +S + Sbjct: 642 CGSKLLKRKSKRQQVFVGCSSWPKCNYIISDK 673 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 12/111 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKV 58 M K + + CPKCG +L+ + + G F+GCS YP C + + Sbjct: 583 MEK--ISDEKVGRECPKCGKDLLYKRARRGGSKFIGCSGYPECTH-------LEPLEKPE 633 Query: 59 LEGQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQ 108 CP CG+ L+ R+ + F+GC ++P+C + D+ P Sbjct: 634 ELEISCPECGSKLLKRKSKRQQVFVGCSSWPKCNYIISDKLFDKHMKETPD 684 >UniRef50_B7I2H2 DNA topoisomerase n=4 Tax=Proteobacteria RepID=B7I2H2_ACIB5 Length = 672 Score = 93.4 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 13/115 (11%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHI--VKV 58 + K + CP CG L R G++G F C+ YP C P G Sbjct: 547 LGKLDSAGIAAAHPCPACGKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPP 606 Query: 59 LEGQVCPACGANLVLRQG-----RFGM------FIGCINYPECEHTELIDKPDET 102 G CP CG L RQG + GM F C YP+C+ + + Sbjct: 607 STGFQCPKCGKELARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQTGPDGKP 661 Score = 86.0 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 18/103 (17%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT---------CPQCRTG 112 CPACG L R+G++G F C YPEC+ + DK CP+C Sbjct: 559 HPCPACGKALHRRKGQYGFFWSCTGYPECKTSLPDDKGKPGQRKAPPPSTGFQCPKCGKE 618 Query: 113 HLV-------QRRSRYGKT--FHSCDRYPECQFAINFKPIAGE 146 +++ G+ F+SC YP+C + P Sbjct: 619 LARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQTGPDGKP 661 Score = 65.6 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 25/100 (25%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------------IAGECPEC 150 A CP C L +R+ +YG F SC YPEC+ ++ +CP+C Sbjct: 558 AHPCPACGKA-LHRRKGQYG-FFWSCTGYPECKTSLPDDKGKPGQRKAPPPSTGFQCPKC 615 Query: 151 HYPLLIE----KKTAQGV------KHFCAS-KQCGKPVSA 179 L K +G+ + C +C Sbjct: 616 GKELARRQGVSKPKKKGMKGRPYDFYSCTGYPKCDASYQT 655 >UniRef50_C5B550 DNA topoisomerase n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B550_METEA Length = 888 Score = 93.4 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 59/216 (27%), Gaps = 48/216 (22%) Query: 12 NESCPKC-GAELVIR------SGKHGPFLGCSQY-----PACDYVRPLKSSADGHIVKVL 59 CP C LV + K FL C + C Y P Sbjct: 638 GTECPHCRAGHLVTQLWPFDDEYKGRRFLRCDNWVKDRADNCRYKTP-PEGYKEREKLEG 696 Query: 60 EGQVCPACGANL-----VLRQG--RFGMFIGCINYPECEHTELIDKPDETAITCPQCRTG 112 EG CPACG + V ++G R F+ C + + CP C G Sbjct: 697 EGNPCPACGKGVLKGGVVRKEGPNRGRPFLMCSEVDREKPDSCQHFEWKDETPCPSCGKG 756 Query: 113 HL----VQRRS-RYGKTFHSCD-----RYPECQFAINFKPIAGE----------CPECHY 152 L V++ G+ F C CQ A + C C Sbjct: 757 VLKRGVVRKEGPNKGRPFAMCSAVDRTNPDGCQHFSWLDEKAAKGPKIKGEGELCTVCGK 816 Query: 153 PLLIEKKTA--QGVKHFCAS------KQCGKPVSAE 180 ++ + C++ C V + Sbjct: 817 GTMMRRTGRTSGKPFLSCSNWKQGASDSCDNRVFPD 852 Score = 66.8 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 34/158 (21%) Query: 3 KSALFTVRNNESCPKCG-----AELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHI 55 K CP CG +V + G + PFL CS D +P Sbjct: 689 KEREKLEGEGNPCPACGKGVLKGGVVRKEGPNRGRPFLMCS---EVDREKPDSCQHFEW- 744 Query: 56 VKVLEGQVCPACGANLVLRQ-------GRFGMFIGCI-----NYPECEHTELIDKPDETA 103 + CP+CG ++ R + F C N C+H +D+ Sbjct: 745 ---KDETPCPSCGKGVLKRGVVRKEGPNKGRPFAMCSAVDRTNPDGCQHFSWLDEKAAKG 801 Query: 104 IT-------CPQCRTGHLVQRRSRY-GKTFHSCDRYPE 133 C C G +++R R GK F SC + + Sbjct: 802 PKIKGEGELCTVCGKGTMMRRTGRTSGKPFLSCSNWKQ 839 Score = 49.1 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 15/110 (13%) Query: 10 RNNESCPKCGAELVIR-------SGKHGPFLGCS-----QYPACDYVRPLKSSADGHIVK 57 ++ CP CG ++ R K PF CS C + L A Sbjct: 745 KDETPCPSCGKGVLKRGVVRKEGPNKGRPFAMCSAVDRTNPDGCQHFSWLDEKAAKGPKI 804 Query: 58 VLEGQVCPACGA-NLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAI 104 EG++C CG ++ R GR F+ C N+ + ++ Sbjct: 805 KGEGELCTVCGKGTMMRRTGRTSGKPFLSCSNWKQGASDSCDNRVFPDDG 854 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 31/118 (26%) Query: 94 ELIDKPDETAITCPQCRTGHLVQR-----RSRYGKTFHSCDRY-----PECQFAIN---- 139 ++ + CP CR GHLV + G+ F CD + C++ Sbjct: 629 FSVEPLEGHGTECPHCRAGHLVTQLWPFDDEYKGRRFLRCDNWVKDRADNCRYKTPPEGY 688 Query: 140 -----FKPIAGECPECHYPLL----IEKKT--AQGVKHFCAS------KQCGKPVSAE 180 + CP C +L + K+ C+ C + Sbjct: 689 KEREKLEGEGNPCPACGKGVLKGGVVRKEGPNRGRPFLMCSEVDREKPDSCQHFEWKD 746 >UniRef50_P78032 DNA topoisomerase 1 n=2 Tax=Mycoplasma RepID=TOP1_MYCPN Length = 711 Score = 92.2 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 7/98 (7%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKV 58 + + CP C + L+ R K G F+GCS +P C Y ++ + + K+ Sbjct: 610 IQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLTLEKL 669 Query: 59 LEGQVCPACGANLVLRQGRFGM---FIGCINYPECEHT 93 E +CP C + LV R+ +F F+GC N+P C + Sbjct: 670 EE--LCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYI 705 Score = 81.4 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 11/95 (11%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN--------FKPIAGEC 147 + + CP C + L + R + F C +P C++ + + C Sbjct: 614 KKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQNKPNLTLEKLEELC 673 Query: 148 PECHYPLLIEKKT--AQGVKHFCAS-KQCGKPVSA 179 PEC+ L+ + C++ +C Sbjct: 674 PECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKD 708 Score = 79.5 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%) Query: 32 FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPE 89 F S + + S K G+ CP+C + L+ R + G F+GC N+P Sbjct: 595 FW--SNFKE-EVKLAEGSIQRVKKEKEFVGRDCPSCASPLLYRYTKRGNEKFVGCSNFPN 651 Query: 90 CEHT-----ELIDKPDETAITCPQCRTGHLVQRRSRY--GKTFHSCDRYPECQFAINF 140 C++ + ++ CP+C + LV+RR+++ KTF C +P C++ Sbjct: 652 CKYNEFSQNKPNLTLEKLEELCPECNS-QLVKRRTKFNPNKTFVGCSNFPRCRYIKKD 708 Score = 56.4 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGP---FLGCSQYPACDYVRPLK 48 K L + E CP+C ++LV R K P F+GCS +P C Y++ Sbjct: 660 NKPNLTLEKLEELCPECNSQLVKRRTKFNPNKTFVGCSNFPRCRYIKKDN 709 Score = 41.0 bits (94), Expect = 0.018, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%) Query: 143 IAGECPECHYPLLIEKKTA-QGVKHFCAS-KQCGKPVSAE 180 + +CP C PLL C++ C ++ Sbjct: 620 VGRDCPSCASPLLYRYTKRGNEKFVGCSNFPNCKYNEFSQ 659 >UniRef50_A3M2F6 TraB protein n=2 Tax=Acinetobacter baumannii ATCC 17978 RepID=A3M2F6_ACIBT Length = 753 Score = 92.2 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 14/177 (7%) Query: 11 NNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 + C KC +LV + +G + C+ C ++ + + C C + Sbjct: 572 PKQYCSKCSEQLVNMTSANGKPYFKCTNL-KCGHMMMNQDGIAIDRESLTSEFKCIVCES 630 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 L+ R G+ G F GC + + +K + P + R K Sbjct: 631 GLISRSGQNGEFFGCSGFFKKR-----NKCTASYQKKPDGTPDYQAFLAKRELKESKQEQ 685 Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGV------KHFCASKQCGKPVSAE 180 K CPEC LL ++ C+S C E Sbjct: 686 GEKPVPKNTEKKEKEFNCPECKA-LLQQRTGKSKTTNKKWEIWSCSSPNCKNEYWGE 741 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 ++ + C C + L+ RSG++G F GCS + + + Sbjct: 615 DRESLTSEFKCIVCESGLISRSGQNGEFFGCSGFFKKRNKCTASYQKKPDGTPDYQAFL- 673 Query: 65 PACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR---Y 121 A L++ + + + E CP+C+ L QR + Sbjct: 674 ----AKRELKESKQ--------EQGEKPVPKNTEKKEKEFNCPECK-ALLQQRTGKSKTT 720 Query: 122 GKTF--HSCDRYPECQFAINFK 141 K + SC P C+ + Sbjct: 721 NKKWEIWSCSS-PNCKNEYWGE 741 >UniRef50_B1AJN1 DNA topoisomerase I n=15 Tax=Ureaplasma RepID=B1AJN1_UREP2 Length = 681 Score = 92.2 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGR-FGMFIGCINYPECEHTELIDKPDET 102 + + ++CP C +L++++ R FI C N+P C TE ++KP+ Sbjct: 573 EVKQAYTKIEKVPDEKINRLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLEKPEIL 632 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 CP C + LV+R++R K F C YPEC F N Sbjct: 633 NELCPNC-SKSLVKRKNRKNKYFIGCTGYPECNFIRNLDESN 673 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Query: 4 SALFTVRNNESCPKCGAELVIRSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 + + N CP C +L+I+ + + F+ CS +P C + L+ + + Sbjct: 582 EKVPDEKINRLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLE-------KPEILNE 634 Query: 63 VCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETA 103 +CP C +LV R+ R FIGC YPEC +D+ + Sbjct: 635 LCPNCSKSLVKRKNRKNKYFIGCTGYPECNFIRNLDESNNDK 676 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP---IAGECPECHYPL 154 ++ CP C L+ +RSR F +C +P C+F + + + CP C L Sbjct: 585 PDEKINRLCPIC-AHDLLIKRSRMNTRFIACSNFPTCRFTESLEKPEILNELCPNCSKSL 643 Query: 155 LIEKKTAQGVKHFCAS-KQCGKPVSAE 180 + K C +C + + Sbjct: 644 VKRKNRKNKYFIGCTGYPECNFIRNLD 670 Score = 56.0 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHI 55 +S NE CP C LV R + F+GC+ YP C+++R L S + Sbjct: 624 ESLEKPEILNELCPNCSKSLVKRKNRKNKYFIGCTGYPECNFIRNLDESNNDKN 677 Score = 43.7 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 138 INFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 + + I CP C + LLI++ C++ C S E Sbjct: 584 VPDEKINRLCPICAHDLLIKRSRMNTRFIACSNFPTCRFTESLE 627 >UniRef50_Q2RKN9 DNA topoisomerase I n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKN9_MOOTA Length = 1041 Score = 91.1 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPA--CDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 SCP CG +R+GKHGPF GC+ + C + + V+ LE CP CG Sbjct: 957 PSCPLCGGTTGLRTGKHGPFFGCASFRNGGCKGLINIPRRVLELAVQDLE-LTCPHCGGK 1015 Query: 71 LVLRQGRFGMFIGCINYPECEHTELI 96 +VL+ GR G F+GC YP+C T+ Sbjct: 1016 VVLKSGRNGAFLGCSRYPDCRWTDSF 1041 Score = 75.3 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINY--PECEHTELIDKP------DETAITCPQCRTGH 113 CP CG LR G+ G F GC ++ C+ I + + +TCP C G Sbjct: 957 PSCPLCGGTTGLRTGKHGPFFGCASFRNGGCKGLINIPRRVLELAVQDLELTCPHCG-GK 1015 Query: 114 LVQRRSRYGKTFHSCDRYPECQFA 137 +V + R G F C RYP+C++ Sbjct: 1016 VVLKSGRNG-AFLGCSRYPDCRWT 1038 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 15/93 (16%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE--CQFAINFK---------PIAGE 146 K +CP C G R ++G F C + C+ IN + Sbjct: 951 KKRMAFPSCPLCG-GTTGLRTGKHG-PFFGCASFRNGGCKGLINIPRRVLELAVQDLELT 1008 Query: 147 CPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 CP C +++ K G C+ C S Sbjct: 1009 CPHCGGKVVL-KSGRNGAFLGCSRYPDCRWTDS 1040 >UniRef50_C6BT42 DNA topoisomerase type IA central domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT42_DESAD Length = 720 Score = 91.1 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 14/93 (15%) Query: 64 CPACGANLVL-RQGRFGMFIGCINYPECEHTELIDKPDET-------------AITCPQC 109 CP C + R+G G F GC YP+C T CP C Sbjct: 621 CPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEHKCPDC 680 Query: 110 RTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 G + + R G + SC +PEC+F + Sbjct: 681 GKGLIRRPAKRKGLFWWSCSGFPECKFRCFDEK 713 Score = 90.7 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 19/97 (19%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP----------------IAG 145 +A+ CP+C+TG L R+ GK F C YP+C K Sbjct: 617 SAVQCPKCKTGFLKPRKGPKGK-FWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEH 675 Query: 146 ECPECHYPLLIEKKTAQG-VKHFCAS-KQCGKPVSAE 180 +CP+C L+ +G C+ +C E Sbjct: 676 KCPDCGKGLIRRPAKRKGLFWWSCSGFPECKFRCFDE 712 Score = 83.4 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 9/97 (9%) Query: 15 CPKCG-AELVIRSGKHGPFLGCSQYPAC------DYVRPLKSSADGHIVKVLEGQVCPAC 67 CPKC L R G G F GCS YP C +P + + + CP C Sbjct: 621 CPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNKAGKPDLKAKPAKKLAASKEHKCPDC 680 Query: 68 GANLVLRQG-RFGMF-IGCINYPECEHTELIDKPDET 102 G L+ R R G+F C +PEC+ +K Sbjct: 681 GKGLIRRPAKRKGLFWWSCSGFPECKFRCFDEKGKPK 717 Score = 52.5 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 12 NESCPKCGAELVIRSG-KHGPF-LGCSQYPACDYVRPLKSSADG 53 CP CG L+ R + G F CS +P C + + Sbjct: 674 EHKCPDCGKGLIRRPAKRKGLFWWSCSGFPECKFRCFDEKGKPK 717 Score = 44.1 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 139 NFKPIAGECPECHYPLLIEKKTAQGVKHFCA-SKQCGKPVSAE 180 N K A +CP+C L +K +G C+ C + Sbjct: 613 NIKSSAVQCPKCKTGFLKPRKGPKGKFWGCSAYPDCNATFPNK 655 >UniRef50_B5TTQ4 TraB n=3 Tax=environmental samples RepID=B5TTQ4_9BACT Length = 750 Score = 90.7 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 12/124 (9%) Query: 63 VCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETA--ITCPQCRTGHLVQRR 118 CP C + L + F C N +CP+C+TG L + + Sbjct: 566 PCPKCKSQLKKFKNTKTNQFFWICSNEDCKHSMNDDKGKPVEKVIHSCPKCKTGRLNKFQ 625 Query: 119 SRYGKTFHSCDRYPECQFAINFKP------IAGECPECHYPLLIEKKTAQGVKHFCASK- 171 + K F EC+ +++ K I CP+C PL KK + FC ++ Sbjct: 626 NSQTKEFFWICNDQECKHSMDDKKGQPVEKIKYPCPKCSTPLFRSKKEGKDPIWFCPNRE 685 Query: 172 -QCG 174 C Sbjct: 686 TDCK 689 Score = 85.3 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 64/194 (32%), Gaps = 20/194 (10%) Query: 1 MAKSALFTVRNNESCPKCGAELVI-RSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 ++ ++ T N CPKC ++L ++ K + F CS C + Sbjct: 553 LSTASKLTAINAIPCPKCKSQLKKFKNTKTNQFFWICSN-EDCKHSMNDDKG----KPVE 607 Query: 59 LEGQVCPACGANLVLR--QGRFGMFIGCINYPECEHTELIDKPDETAI---TCPQCRTGH 113 CP C + + + F N EC+H+ K CP+C T Sbjct: 608 KVIHSCPKCKTGRLNKFQNSQTKEFFWICNDQECKHSMDDKKGQPVEKIKYPCPKCSTPL 667 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINF---KPIAGE--CPECHYPLLIEKKTAQGVKHFC 168 ++ + +R +C+ + KP+ CP+C L A G C Sbjct: 668 FRSKKEGKDPIWFCPNRETDCKVFLPEVNKKPLLEVYSCPQCASD-LRRINGANGYFWGC 726 Query: 169 AS--KQCGKPVSAE 180 + C + Sbjct: 727 TNYKNGCSATYPDQ 740 Score = 72.9 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 37/145 (25%), Gaps = 15/145 (10%) Query: 6 LFTVRNNESCPKCG-AELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 + SCPKC L F C C + K Sbjct: 604 KPVEKVIHSCPKCKTGRLNKFQNSQTKEFFWIC-NDQECKHSMDDKKGQ----PVEKIKY 658 Query: 63 VCPACGANLVL-RQGRFGMFIGCINYPE-CEHTELIDKPDE--TAITCPQCRTGHLVQRR 118 CP C L ++ C N C+ +CPQC + ++R Sbjct: 659 PCPKCSTPLFRSKKEGKDPIWFCPNRETDCKVFLPEVNKKPLLEVYSCPQCASD--LRRI 716 Query: 119 SRYGKTFHSCDRYPE-CQFAINFKP 142 + F C Y C + Sbjct: 717 NGANGYFWGCTNYKNGCSATYPDQK 741 >UniRef50_A0LAP8 DNA topoisomerase n=13 Tax=cellular organisms RepID=A0LAP8_MAGSM Length = 744 Score = 89.5 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 14/115 (12%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL--------- 95 R + S +CP CG ++ R+ G F C C T Sbjct: 630 RRQRRSKAEVTPTPNAAPLCPQCGGPMLQRKSPQGAFWSCAEQATCTGTRPGSPLAAHSP 689 Query: 96 -IDKPDETAITCPQCRTGHLVQRRSRYGK----TFHSCDRYPECQFAINFKPIAG 145 + E CP+C+ LVQR + GK F C RYP+C++ + Sbjct: 690 LMQPNPERGPLCPKCQQAPLVQRTAYRGKNSGQPFWGCQRYPQCRYTQASQTTES 744 Score = 79.1 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 2 AKSALFTVRNN-ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKS---SADGHIVK 57 +K+ + N CP+CG ++ R G F C++ C RP + Sbjct: 635 SKAEVTPTPNAAPLCPQCGGPMLQRKSPQGAFWSCAEQATCTGTRPGSPLAAHSPLMQPN 694 Query: 58 VLEGQVCPAC-GANLVLRQGRFG-----MFIGCINYPECEHTE 94 G +CP C A LV R G F GC YP+C +T+ Sbjct: 695 PERGPLCPKCQQAPLVQRTAYRGKNSGQPFWGCQRYPQCRYTQ 737 Score = 56.4 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 21/103 (20%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG----------- 145 A CPQC G ++QR+S G F SC C P+A Sbjct: 640 TPTPNAAPLCPQCG-GPMLQRKSPQG-AFWSCAEQATCTGTRPGSPLAAHSPLMQPNPER 697 Query: 146 --ECPECHYPLLIEKKTAQG-----VKHFCAS-KQCGKPVSAE 180 CP+C L+++ +G C QC +++ Sbjct: 698 GPLCPKCQQAPLVQRTAYRGKNSGQPFWGCQRYPQCRYTQASQ 740 >UniRef50_B1VAJ5 DNA topoisomerase n=6 Tax=Acholeplasmataceae RepID=B1VAJ5_PHYAS Length = 655 Score = 88.4 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 6/106 (5%) Query: 4 SALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPL----KSSADGHIVKV 58 + + ++ C C L+I+ +G FLGCS++P C P K+ + Sbjct: 550 EKIKPIETDQKCNLCNEGNLLIKKSHYGSFLGCSRFPDCKNTSPWKVQEKNKSKDSDHSN 609 Query: 59 LEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 Q C C NL++++ R+G F+GC +P+C++ I + Sbjct: 610 QTDQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVKIKNKPNSK 655 Score = 82.6 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%) Query: 45 RPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTEL-------- 95 + I + Q C C NL++++ +G F+GC +P+C++T Sbjct: 542 YQIADQKLEKIKPIETDQKCNLCNEGNLLIKKSHYGSFLGCSRFPDCKNTSPWKVQEKNK 601 Query: 96 ---IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 D ++T C C G+L+ ++SRYG F C R+P+C+ + K Sbjct: 602 SKDSDHSNQTDQKCNLCNEGNLLIKKSRYGS-FLGCSRFPDCKNIVKIKNKP 652 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK--------------PI 143 KP ET C C G+L+ ++S YG F C R+P+C+ +K Sbjct: 553 KPIETDQKCNLCNEGNLLIKKSHYGS-FLGCSRFPDCKNTSPWKVQEKNKSKDSDHSNQT 611 Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 +C C+ L+ KK+ G C+ C V Sbjct: 612 DQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVK 647 Score = 57.2 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 2 AKSALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 +K + + + ++ C C L+I+ ++G FLGCS++P C + +K+ + Sbjct: 602 SKDSDHSNQTDQKCNLCNEGNLLIKKSRYGSFLGCSRFPDCKNIVKIKNKPN 653 >UniRef50_Q2BNY9 Helicase IV n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNY9_9GAMM Length = 952 Score = 88.4 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 13/114 (11%) Query: 5 ALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG-- 61 + C C L+ R G HG F+GCS YP C+Y + + E Sbjct: 839 KEQSEAKERRCRSCESGTLIKREGPHGTFMGCSNYPLCNYKESTCPRCNSTMNNSNEYRI 898 Query: 62 ----------QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 +CP CG NL++R+ +G F GC NY + + Sbjct: 899 CSNSSCSWWIPICPECGGNLMMRESHYGKFWGCENYRSVGSSCCHRQKFIEPPE 952 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 12/81 (14%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPL 154 ++ + C C +G L++R +G TF C YP C + CP C+ + Sbjct: 838 DKEQSEAKERRCRSCESGTLIKREGPHG-TFMGCSNYPLCNY------KESTCPRCNSTM 890 Query: 155 LIEKKTAQGVKHFCASKQCGK 175 C++ C Sbjct: 891 -----NNSNEYRICSNSSCSW 906 >UniRef50_C9Q4L2 DNA topoisomerase n=1 Tax=Vibrio sp. RC341 RepID=C9Q4L2_9VIBR Length = 736 Score = 88.0 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 9/107 (8%) Query: 8 TVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK------VLE 60 + R CP C L R G++GPF C++YP C P + K Sbjct: 627 SKRQGMVCPTCQQGTLTKRKGQNGPFWSCNRYPDCKTTFPDDNGKPNLNPKPRQAVTPST 686 Query: 61 GQVCPACGANLVLRQGRF-GMF-IGCINYPECEHTELIDKPDETAIT 105 + C CG LV R G+ G F GC +P+C Sbjct: 687 QEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKCTVRFFDQNGQPDRDR 733 Score = 83.7 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 19/107 (17%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF----------- 140 T+ + + CP C+ G L +R+ + G F SC+RYP+C+ Sbjct: 620 KTQGVPFSKRQGMVCPTCQQGTLTKRKGQNG-PFWSCNRYPDCKTTFPDDNGKPNLNPKP 678 Query: 141 -----KPIAGECPECHYPLLIEKKTAQG-VKHFCAS-KQCGKPVSAE 180 C +C PL+ +G C+ +C + Sbjct: 679 RQAVTPSTQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKCTVRFFDQ 725 Score = 78.7 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 14/102 (13%) Query: 47 LKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 G +G VCP C L R+G+ G F C YP+C+ T D Sbjct: 617 DHVKTQGVPFSKRQGMVCPTCQQGTLTKRKGQNGPFWSCNRYPDCKTTFPDDNGKPNLNP 676 Query: 106 -------------CPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 C QC + + + G + C +P+C Sbjct: 677 KPRQAVTPSTQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKC 718 Score = 50.6 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKH-GPF-LGCSQYPACDYVRPLKSSADGHI 55 T E C +CG LV R GK G F GCS +P C ++ Sbjct: 680 QAVTPSTQEFCKQCGNPLVRRPGKKEGSFWWGCSGFPKCTVRFFDQNGQPDRD 732 >UniRef50_Q9Z5W4 Topoisomerase n=1 Tax=Pseudomonas aeruginosa RepID=Q9Z5W4_PSEAE Length = 405 Score = 85.7 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 26/118 (22%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLK---------- 48 T SCP+CG +V+R+ K G F GCS YP C + P++ Sbjct: 286 KQAGTPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCRGIIPVEVIVPAEDAGP 345 Query: 49 ------SSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTEL 95 +A + VCP CG ++VLR + G F GC +P+C Sbjct: 346 VPTEQAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKCRGMRS 403 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 31/127 (24%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELID- 97 R CP CG +VLR + G F GC YP+C ++ Sbjct: 277 EREDVPPEPKQAGTPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCRGIIPVEV 336 Query: 98 ----------------------KPDETAITCPQCRTGHLV---QRRSRYGKTFHSCDRYP 132 + A CP+C ++ +R S+ G F C +P Sbjct: 337 IVPAEDAGPVPTEQAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFP 396 Query: 133 ECQFAIN 139 +C+ + Sbjct: 397 KCRGMRS 403 Score = 67.9 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 34/118 (28%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSR---YGKTFHSCDRYPECQFAINFK------ 141 E +CP+C +++ R G+ F C YP+C+ I + Sbjct: 282 PPEPKQAGTPEGTPSCPRCGKPMVLRTSKRGQNQGEQFWGCSGYPKCRGIIPVEVIVPAE 341 Query: 142 -------------------PIAGE-CPECHYPLLIEKKT----AQGVKHFCAS-KQCG 174 P CP+C +++ C +C Sbjct: 342 DAGPVPTEQAIAARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKCR 399 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRP 46 A+ A + + CPKCG +V+R K G F GC +P C +R Sbjct: 354 ARPAAESPTDAPVCPKCGESMVLRMSKRGSQKGSRFWGCPGFPKCRGMRS 403 >UniRef50_D1BLQ5 DNA topoisomerase n=3 Tax=Veillonella RepID=D1BLQ5_VEIPT Length = 773 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 17/111 (15%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN----- 139 + + + CP+C+ G L QR ++G F C YP C+ Sbjct: 649 TSQNRKRPMDSESVDLSSLPVCPKCKKGRLQQRNGKFG-AFLGCTNYPTCKHTQPVEGDT 707 Query: 140 ----------FKPIAGECPECHYPLLIEKKTAQGVKHFCASK-QCGKPVSA 179 + +CP C+ ++++ C+++ QC S Sbjct: 708 SSVEGNIEVSDEDKQYKCPRCNVGYFVKQEVRGRTNWICSNRSQCKTQCSD 758 Score = 79.1 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 7/100 (7%) Query: 4 SALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLK-----SSADGHIVK 57 S + + CPKC L R+GK G FLGC+ YP C + +P++ + + Sbjct: 659 SESVDLSSLPVCPKCKKGRLQQRNGKFGAFLGCTNYPTCKHTQPVEGDTSSVEGNIEVSD 718 Query: 58 VLEGQVCPACGANLVLRQG-RFGMFIGCINYPECEHTELI 96 + CP C ++Q R C N +C+ Sbjct: 719 EDKQYKCPRCNVGYFVKQEVRGRTNWICSNRSQCKTQCSD 758 >UniRef50_B9NSL7 UvrD/REP helicase n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSL7_9RHOB Length = 971 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 45/126 (35%), Gaps = 31/126 (24%) Query: 11 NNESCPKCGAELVIRSGKHGPFL-GCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 +C +CG L+ K G C C + CP+CG Sbjct: 870 EPHTCGECGGHLLAFPTKDGGMWYRCEHADLCGFSIN----------------ACPSCGI 913 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 L + G G + C N CP+C G LV+R+SRYGK F C Sbjct: 914 GLPEQDGEAGP-MKCRNCG------------AEYPACPECENGWLVERKSRYGK-FLGCV 959 Query: 130 RYPECQ 135 +P C+ Sbjct: 960 SFPRCK 965 Score = 59.5 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 23/118 (19%) Query: 59 LEGQVCPACGANLVLRQGRFG-MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQR 117 E C CG +L+ + G M+ C + C + CP C G ++ Sbjct: 869 NEPHTCGECGGHLLAFPTKDGGMWYRCEHADLCGFSINA---------CPSCGIGLP-EQ 918 Query: 118 RSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 G +C+ P CPEC L+E+K+ G C S +C Sbjct: 919 DGEAGPM--------KCRNCGAEYP---ACPECENGWLVERKSRYGKFLGCVSFPRCK 965 >UniRef50_B1VJ64 DNA topoisomerase n=9 Tax=Gammaproteobacteria RepID=B1VJ64_PROMH Length = 772 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 10/123 (8%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQV------ 63 N CP C L+ R G++G F GCS YP C P K+ + EG V Sbjct: 631 NGTPCPVCQKGFLIKRKGQNGFFWGCSCYPECKTAFPDKNGQPVTEKQPNEGAVARLNVM 690 Query: 64 CPACGANLVLRQGRFGMFI-GCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 CP+C +++R G F GC E ++ +T + +++ G Sbjct: 691 CPSCSNEIIIR--PKGYFCTGCEFKIWAEFCSKKLTQNQVEKLIKDGKTAVIKGFKTKAG 748 Query: 123 KTF 125 KTF Sbjct: 749 KTF 751 Score = 71.8 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 24/102 (23%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK---PIAGE----- 146 CP C+ G L++R+ + G F C YPEC+ A K P+ + Sbjct: 624 NGINITANGTPCPVCQKGFLIKRKGQNG-FFWGCSCYPECKTAFPDKNGQPVTEKQPNEG 682 Query: 147 --------CPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 CP C ++I K +FC C + AE Sbjct: 683 AVARLNVMCPSCSNEIIIRPKG-----YFCT--GCEFKIWAE 717 >UniRef50_Q9PHK2 DNA topoisomerase I, plasmid n=3 Tax=Gammaproteobacteria RepID=TOP1P_XYLFA Length = 660 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK-SSADGHIVKVLEGQVCPACGA 69 C +CG L GK+G F GCS YP C P + + C CG Sbjct: 559 PKHPCQECGKPLRRIPGKNGHFWGCSGYPDCSVTFPDEGGKPGQKKPVEVSNFACVKCGN 618 Query: 70 NLV--LRQGRFGM-FIGCINYPE-CEHTELIDKPDETAIT 105 L +++G+ G F GC + E C+ T K Sbjct: 619 PLKHLVKKGKGGYDFWGCSGFKEGCKATYEDKKGKPNFEK 658 Score = 84.5 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 10/98 (10%) Query: 55 IVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT--------C 106 V C CG L G+ G F GC YP+C T + C Sbjct: 554 QVSATPKHPCQECGKPLRRIPGKNGHFWGCSGYPDCSVTFPDEGGKPGQKKPVEVSNFAC 613 Query: 107 PQCRTGHL-VQRRSRYGKTFHSCDRYPE-CQFAINFKP 142 +C + ++ + G F C + E C+ K Sbjct: 614 VKCGNPLKHLVKKGKGGYDFWGCSGFKEGCKATYEDKK 651 Score = 73.7 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 17/94 (18%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF--------KPIA---GECPEC 150 C +C ++R F C YP+C KP+ C +C Sbjct: 559 PKHPCQECGKP--LRRIPGKNGHFWGCSGYPDCSVTFPDEGGKPGQKKPVEVSNFACVKC 616 Query: 151 HYPL--LIEKKTAQGVKHFCAS--KQCGKPVSAE 180 PL L++K C+ + C + Sbjct: 617 GNPLKHLVKKGKGGYDFWGCSGFKEGCKATYEDK 650 Score = 42.1 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 4/57 (7%) Query: 4 SALFTVRNNESCPKCGAEL--VIRSGKHGP-FLGCSQYPA-CDYVRPLKSSADGHIV 56 +N +C KCG L +++ GK G F GCS + C K Sbjct: 602 QKKPVEVSNFACVKCGNPLKHLVKKGKGGYDFWGCSGFKEGCKATYEDKKGKPNFEK 658 >UniRef50_D0Z5F5 DNA topoisomerase n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z5F5_LISDA Length = 727 Score = 84.9 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 15 CPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIV---KVLEGQVCPACGAN 70 CP C L+ R+G G F C++YP C P KS + CP C Sbjct: 628 CPNCADGHLIKRNGSKGVFWSCNRYPECKTSFPDKSGKPDTAPKAKPQVSEFNCPLCQKP 687 Query: 71 LVLRQGRFGM------FIGCINYPECEHTELIDKPDET 102 LV R+G+ F GC YP+C+ + Sbjct: 688 LVRRKGKSDKDKPEKYFYGCSGYPQCKASYQEQDNKPK 725 Score = 76.0 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 15/95 (15%) Query: 59 LEGQVCPAC-GANLVLRQGRFGMFIGCINYPECEH----------TELIDKPDETAITCP 107 +E CP C +L+ R G G+F C YPEC+ T KP + CP Sbjct: 623 VETFDCPNCADGHLIKRNGSKGVFWSCNRYPECKTSFPDKSGKPDTAPKAKPQVSEFNCP 682 Query: 108 QCRTGHLVQRRS----RYGKTFHSCDRYPECQFAI 138 C+ + ++ + K F+ C YP+C+ + Sbjct: 683 LCQKPLVRRKGKSDKDKPEKYFYGCSGYPQCKASY 717 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 20/94 (21%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK-------PIAGE------CPECHY 152 CP C GHL++R G F SC+RYPEC+ + K P A CP C Sbjct: 628 CPNCADGHLIKRNGSKG-VFWSCNRYPECKTSFPDKSGKPDTAPKAKPQVSEFNCPLCQK 686 Query: 153 PLLIEKKTA-----QGVKHFCAS-KQCGKPVSAE 180 PL+ K + + + C+ QC + Sbjct: 687 PLVRRKGKSDKDKPEKYFYGCSGYPQCKASYQEQ 720 Score = 50.6 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 6/58 (10%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGP------FLGCSQYPACDYVRPLKSSADGHI 55 + +CP C LV R GK F GCS YP C + + Sbjct: 670 PKAKPQVSEFNCPLCQKPLVRRKGKSDKDKPEKYFYGCSGYPQCKASYQEQDNKPKFN 727 >UniRef50_C6A350 DNA topoisomerase I n=3 Tax=Euryarchaeota RepID=C6A350_THESM Length = 1228 Score = 83.4 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 6/87 (6%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECP 148 K +CP+C +V+ R GK F C +P C P C Sbjct: 1137 NKGKEKIIVGSCPKCGGDLVVRYNRRTGKRFVGCSNWPNCNVTYPLLQRGQIIPTGKTCS 1196 Query: 149 ECHYPLLIEKKTAQGVKHFCASKQCGK 175 EC +I+ K C C K Sbjct: 1197 ECGNAPIIKIKERNREYEVCLDMNCNK 1223 Score = 69.9 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 7/81 (8%) Query: 15 CPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG-ANL 71 CPKCG +LV+R + F+GCS +P C+ PL + G+ C CG A + Sbjct: 1148 CPKCGGDLVVRYNRRTGKRFVGCSNWPNCNVTYPLLQR----GQIIPTGKTCSECGNAPI 1203 Query: 72 VLRQGRFGMFIGCINYPECEH 92 + + R + C++ ++ Sbjct: 1204 IKIKERNREYEVCLDMNCNKN 1224 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%) Query: 39 PACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTEL- 95 P + V +++ + + + CP CG +LV+R R F+GC N+P C T Sbjct: 1123 PEEEKVIQVEADFENKGKEKIIVGSCPKCGGDLVVRYNRRTGKRFVGCSNWPNCNVTYPL 1182 Query: 96 --IDKPDETAITCPQCRTGHLVQRRSRYGKT 124 + T TC +C +++ + R + Sbjct: 1183 LQRGQIIPTGKTCSECGNAPIIKIKERNREY 1213 >UniRef50_A7ZI15 Helicase, UvrD family n=1 Tax=Escherichia coli E24377A RepID=A7ZI15_ECO24 Length = 1010 Score = 83.4 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 31/120 (25%) Query: 14 SCPKCGAE-LVIRSGKH-GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CP C + L + ++ F CS PACDY+ C C + + Sbjct: 886 HCPDCESGCLTGKVSRYDKKFYVCSHSPACDYMAS----------------ACKQCSSPM 929 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 V+ G + C N PEC+ I C +C G +++R+++ G F+ C+RY Sbjct: 930 VMHNGLQRI---CAN-PECQEI---------EIVCRRCGLGTMLKRKNKDGGVFYGCNRY 976 Score = 73.3 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 CP C +G L + SRY K F+ C P C + +A C +C P+++ Sbjct: 884 QWHCPDCESGCLTGKVSRYDKKFYVCSHSPACDY------MASACKQCSSPMVMH----N 933 Query: 163 GVKHFCASKQCGKP 176 G++ CA+ +C + Sbjct: 934 GLQRICANPECQEI 947 >UniRef50_A5UN47 Helicase, UvrD/REP family n=1 Tax=Methanobrevibacter smithii ATCC 35061 RepID=A5UN47_METS3 Length = 661 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 9/143 (6%) Query: 9 VRNNESCPKCGAELVIR-----SGKHGPFLGCSQY--PACDYVRPLKSSADGHIVKVLEG 61 + CP C +V+ GK L CS P + + + + Sbjct: 515 IPTKLKCPVCKTGVVLLESFWNKGKLNRVLKCSHNMAPPFNRCNWEGGYYGSELEDLDDI 574 Query: 62 QVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 + CP+C L+ R F+GC N+ + K + TCP+C + + Sbjct: 575 EYCPSCDGILIKRYRHSDGHPFLGCTNFRKTGCRGKGKKLEYIGKTCPKCGKPLVKRVNG 634 Query: 120 RYGKTFHSCDRYPECQFAINFKP 142 F C +P+C+ FK Sbjct: 635 EDNSLFVGCSGFPKCRHTEPFKK 657 Score = 71.0 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 19/137 (13%) Query: 59 LEGQVCPACGANLVLR-----QGRFGMFIGCIN-----YPECEHTELIDKPDETAIT--- 105 CP C +VL +G+ + C + + C + + Sbjct: 516 PTKLKCPVCKTGVVLLESFWNKGKLNRVLKCSHNMAPPFNRCNWEGGYYGSELEDLDDIE 575 Query: 106 -CPQCRTGHLVQRRSRYGKTFHSCDRYPE--CQFA-INFKPIAGECPECHYPLLIEKKT- 160 CP C + + R G F C + + C+ + I CP+C PL+ Sbjct: 576 YCPSCDGILIKRYRHSDGHPFLGCTNFRKTGCRGKGKKLEYIGKTCPKCGKPLVKRVNGE 635 Query: 161 AQGVKHFCAS-KQCGKP 176 + C+ +C Sbjct: 636 DNSLFVGCSGFPKCRHT 652 Score = 62.5 bits (150), Expect = 6e-09, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 15/103 (14%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG--PFLGCSQYPA--CDYVRPLKSSADGHIVKVL 59 S L + + E CP C L+ R PFLGC+ + C Sbjct: 566 SELEDLDDIEYCPSCDGILIKRYRHSDGHPFLGCTNFRKTGCRGK---------GKKLEY 616 Query: 60 EGQVCPACGANLVLR--QGRFGMFIGCINYPECEHTELIDKPD 100 G+ CP CG LV R +F+GC +P+C HTE K Sbjct: 617 IGKTCPKCGKPLVKRVNGEDNSLFVGCSGFPKCRHTEPFKKEM 659 >UniRef50_O73954 Endonuclease PI-PfuI n=2 Tax=Euryarchaeota RepID=TOP1_PYRFU Length = 1060 Score = 82.2 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPEC-HYPLLI 156 CP+C +V+ + GK F C +P+C P C C P++I Sbjct: 976 GKCPKCGGDLIVKYNEKTGKRFVGCSNWPKCNVTYPILQRGEIIPTNKTC--CNGAPVVI 1033 Query: 157 EKKTAQGVKHFCASKQCGK 175 ++ C C + Sbjct: 1034 IREKDGREWEICLDMNCKE 1052 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%) Query: 14 SCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L+++ + F+GCS +P C+ P+ + + C GA + Sbjct: 977 KCPKCGGDLIVKYNEKTGKRFVGCSNWPKCNVTYPILQR----GEIIPTNKTCCN-GAPV 1031 Query: 72 VLRQGRFGMFI-GCINYPECEH 92 V+ + + G C++ E+ Sbjct: 1032 VIIREKDGREWEICLDMNCKEY 1053 Score = 52.5 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 63 VCPACGANLVLR-QGRFGM-FIGCINYPECEHTELIDKP---DETAITCPQCRTGHLVQR 117 CP CG +L+++ + G F+GC N+P+C T I + T TC C +V Sbjct: 977 KCPKCGGDLIVKYNEKTGKRFVGCSNWPKCNVTYPILQRGEIIPTNKTC--CNGAPVVII 1034 Query: 118 RSRYGKTFHSCDRYPECQ 135 R + G+ + C C+ Sbjct: 1035 REKDGREWEICLDM-NCK 1051 >UniRef50_C6P2V7 DNA topoisomerase n=2 Tax=Proteobacteria RepID=C6P2V7_9PROT Length = 876 Score = 81.8 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 T E+CPKCG L R GK G F+GC+ YP CDY R L D + GQ P Sbjct: 580 TEILEETCPKCGKPLSKRLGKRGSFIGCTGYPECDYTRSLGGEEDAGESRKELGQ-HPDT 638 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 ++L +G +G ++ E E T+ + Sbjct: 639 NQLVLLLRGPYGPYVQLGEMIEGEKTKPKRVSWPKELP 676 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 3/62 (4%) Query: 80 MFI-GCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 F G + + TCP+C L +R + G F C YPEC + Sbjct: 560 EFWKGFNKLISEKKDVDRPGTEILEETCPKCGKP-LSKRLGKRGS-FIGCTGYPECDYTR 617 Query: 139 NF 140 + Sbjct: 618 SL 619 Score = 53.7 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 23/53 (43%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + + + CP CG L R G+ G FIGC YPEC++T Sbjct: 566 NKLISEKKDVDRPGTEILEETCPKCGKPLSKRLGKRGSFIGCTGYPECDYTRS 618 Score = 44.1 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 141 KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 + + CP+C P L ++ +G C +C S Sbjct: 581 EILEETCPKCGKP-LSKRLGKRGSFIGCTGYPECDYTRS 618 >UniRef50_Q5ZHE3 DNA topoisimerase n=9 Tax=root RepID=Q5ZHE3_9BACT Length = 737 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 7/104 (6%) Query: 9 VRNNESCPKCGAEL--VIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHI--VKVLEGQV 63 + CP CG L + + K+ F GC+ + C + K KV E Sbjct: 626 KIDTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAPKVSELHK 685 Query: 64 CPACGANLVLRQGRF-GMFI-GCINYPECEHTELIDKPDETAIT 105 C ACG L R G+ GMF GC N+P C+ T K Sbjct: 686 CMACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPDLKGRPDYSK 729 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 60 EGQVCPACGANL--VLRQGRFGMFIGCINYPE-CEHTELID---------KPDETAITCP 107 + CP+CG L + ++ + F GC + + C+ C Sbjct: 628 DTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAPKVSELHKCM 687 Query: 108 QCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 C G + + G + C +P C+ Sbjct: 688 ACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPD 720 Score = 76.0 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 15/100 (15%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE-CQFAINF---KPIAGECPE- 149 CP C ++ + F C + + C+FA + KP+ E P+ Sbjct: 621 NGLNMKIDTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDKGGKPVPREAPKV 680 Query: 150 --------CHYPLLIEKKTAQG-VKHFCAS-KQCGKPVSA 179 C + L +G C++ C + Sbjct: 681 SELHKCMACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPD 720 Score = 49.1 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 18/57 (31%), Gaps = 2/57 (3%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKH-GPFL-GCSQYPACDYVRPLKSSADGHIVKVL 59 V C CG L R GK G F GCS +P C P + Sbjct: 676 EAPKVSELHKCMACGHGLSRRPGKKRGMFWWGCSNFPTCKQTYPDLKGRPDYSKGRN 732 Score = 42.9 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 3/49 (6%) Query: 135 QFAINFKPIAGECPECHYPLLI-EKKTAQGVKHFCAS--KQCGKPVSAE 180 +N K CP C PL +KK C C + Sbjct: 620 DNGLNMKIDTHPCPSCGKPLRRLKKKDKNEYFWGCTGFADGCKFACDDK 668 >UniRef50_A4WTK0 UvrD/REP helicase n=8 Tax=Rhodobacterales RepID=A4WTK0_RHOS5 Length = 978 Score = 81.0 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 32/125 (25%) Query: 11 NNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 N C +CG L+ GK G + C C + P CP+CGA Sbjct: 866 ENHVCGECGGRLLGVIGKDGRTWYRCEHAQHCGNLLP----------------ACPSCGA 909 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 L R E E+ + TCP+CR G LV+R +G F C Sbjct: 910 ALPRRNE--------------EAAEVRCGCGASYPTCPECRDGWLVERAGSFG-RFLGCV 954 Query: 130 RYPEC 134 RYP C Sbjct: 955 RYPTC 959 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 36/131 (27%), Gaps = 26/131 (19%) Query: 46 PLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAI 104 E VC CG L+ G+ G + C + C + Sbjct: 852 DPDYGIAAAPDAQTENHVCGECGGRLLGVIGKDGRTWYRCEHAQHCGNLLPA-------- 903 Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDR-YPECQFAINFKPIAGECPECHYPLLIEKKTAQG 163 CP C +R + C YP CPEC L+E+ + G Sbjct: 904 -CPSCGAALP-RRNEEAAEVRCGCGASYP-------------TCPECRDGWLVERAGSFG 948 Query: 164 VKHFCAS-KQC 173 C C Sbjct: 949 RFLGCVRYPTC 959 >UniRef50_C4LDL2 UvrD/REP helicase n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LDL2_TOLAT Length = 1013 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 31/119 (26%) Query: 15 CPKCGAE-LVIRSGKHG-PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP C + L+ ++ +G F CS PAC++ C CG+ L+ Sbjct: 894 CPSCESGWLLAKNSHYGRKFYICSLSPACNHTTNS----------------CKQCGSPLL 937 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY 131 N+PE D + + C +C G +V R+++ G TF+ C+RY Sbjct: 938 -------------NHPEVLRICANDACQDIEVGCHRCGIGTMVLRKNKNGGTFYGCNRY 983 Score = 68.3 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 10/84 (11%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 + + DK + CP C +G L+ + S YG+ F+ C P C N C +C Sbjct: 879 KFITMSDKAEIGLWNCPSCESGWLLAKNSHYGRKFYICSLSPACNHTTN------SCKQC 932 Query: 151 HYPLLIEKKTAQGVKHFCASKQCG 174 PLL + V CA+ C Sbjct: 933 GSPLLNHPE----VLRICANDACQ 952 >UniRef50_A3X5L1 Helicase IV n=1 Tax=Roseobacter sp. MED193 RepID=A3X5L1_9RHOB Length = 951 Score = 80.7 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 42/134 (31%), Gaps = 31/134 (23%) Query: 14 SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 C +CG L+ + G + C C P C CG + Sbjct: 825 PCSECGGRLLPVPARDGRVWYRCEHNLMCRNYMP----------------ACSQCGIGIP 868 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP 132 G G+ + C + CP+C G LV+R YG F C RYP Sbjct: 869 TVSGASGI-LECS------------HCGASHHECPKCSDGWLVERHGPYG-DFFGCIRYP 914 Query: 133 ECQFAINFKPIAGE 146 +C N + Sbjct: 915 DCTGKANVSEVRSR 928 Score = 51.4 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 33/139 (23%), Gaps = 24/139 (17%) Query: 39 PAC---DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 P+C + V + + C CG L+ R G E Sbjct: 798 PSCFVRELVSDTEYGLATSTGSMAGHVPCSECGGRLLPVPARDGRVW--------YRCEH 849 Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLL 155 C QC G EC ECP+C L Sbjct: 850 NLMCRNYMPACSQCGIGIPTVS---------GASGILECSHCG---ASHHECPKCSDGWL 897 Query: 156 IEKKTAQGVKHFCAS-KQC 173 +E+ G C C Sbjct: 898 VERHGPYGDFFGCIRYPDC 916 Score = 49.8 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Query: 11 NNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRP 46 ++ CPKC LV R G +G F GC +YP C Sbjct: 885 SHHECPKCSDGWLVERHGPYGDFFGCIRYPDCTGKAN 921 >UniRef50_D2EGP7 DNA topoisomerase n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EGP7_9EURY Length = 703 Score = 79.9 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHY 152 TCP+ + + K F C YP+C F + CP+C Sbjct: 606 QQYIFGTCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQSGYFFISPQSCPKCGI 665 Query: 153 PLLI-EKKTAQGVKHFCASKQCG 174 ++ K ++ FC + C Sbjct: 666 HMIEWHAKESKRTYIFCVNPACK 688 Score = 71.8 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 M K+ L +CPK G +L + K H F+GCS YP C + PL S I Sbjct: 600 MHKALLQQYIFG-TCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQSGYFFISPQ 658 Query: 59 LEGQVCPACGANLVLRQGR--FGMFIGCINYPECEHTELIDKPDETAITC 106 CP CG +++ + +I C+N P C+ + + Sbjct: 659 S----CPKCGIHMIEWHAKESKRTYIFCVN-PACKVEKKEKAIAKEKTKK 703 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 63 VCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDE---TAITCPQCRTGHLVQR 117 CP G L L + F+GC +YP+C + + + +CP+C + Sbjct: 612 TCPKSGGKLKLVVSKKSHKRFVGCSDYPKCHFGMPLPQSGYFFISPQSCPKCGIHMIEWH 671 Query: 118 RSRYGKTFHSCDRYPECQ 135 +T+ C P C+ Sbjct: 672 AKESKRTYIFCVN-PACK 688 >UniRef50_Q481U8 Helicase IV n=1 Tax=Colwellia psychrerythraea 34H RepID=Q481U8_COLP3 Length = 1042 Score = 79.1 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 36/136 (26%) Query: 7 FTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 ++ ++ C C L R+G+ G F CS P C++ + + C Sbjct: 922 QSLVDDLHCLACKTGLLKKRTGRFGTFYACSNSPRCEH----------------KEKPCA 965 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTF 125 C + + + R+ F C+N D TC C +V R S+ G+ F Sbjct: 966 KCESPMTRK--RYPGFKTCLN----------DLCKSLIPTCSLCDA-EMVLRTSKKGE-F 1011 Query: 126 HSCDRYP-----ECQF 136 C Y C+ Sbjct: 1012 WGCRNYKGNDPMSCKN 1027 Score = 72.2 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 14/89 (15%) Query: 86 NYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 N EC T+ + C C+TG L +R R+G TF++C P C+ Sbjct: 914 NEFECTATQSLVDDLH----CLACKTGLLKKRTGRFG-TFYACSNSPRCEH------KEK 962 Query: 146 ECPECHYPLLIEKKTAQGVKHFCASKQCG 174 C +C P+ ++ C + C Sbjct: 963 PCAKCESPMTRKRYPG---FKTCLNDLCK 988 >UniRef50_O28469 DNA topoisomerase 1 n=8 Tax=Euryarchaeota RepID=TOP1_ARCFU Length = 663 Score = 78.7 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIE 157 CP+C G LV R+S+ GK F C YP+C F + A +C E + Sbjct: 581 GKCPECG-GELVVRQSKAGKRFIGCSNYPDCTFTLPLPQNGTLYITAKQCKEHEIKEVKI 639 Query: 158 KKTAQGVKHFCASKQCGKPVSAE 180 + C C + Sbjct: 640 RTKKGYWNLGCPY--CNYLNWKK 660 Score = 76.8 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 6/82 (7%) Query: 63 VCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTGHL--VQRRS 119 CP CG LV+RQ + G FIGC NYP+C T + + IT QC+ + V+ R+ Sbjct: 582 KCPECGGELVVRQSKAGKRFIGCSNYPDCTFTLPLPQNGTLYITAKQCKEHEIKEVKIRT 641 Query: 120 RYGKTFHSCDRYPECQFAINFK 141 + G C P C + K Sbjct: 642 KKGYWNLGC---PYCNYLNWKK 660 Score = 72.2 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 12/104 (11%) Query: 1 MAKSALFTVRNNE---SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIV 56 ++K V+ ++ CP+CG ELV+R K G F+GCS YP C + PL + + Sbjct: 566 LSKDLREGVKKDKIVGKCPECGGELVVRQSKAGKRFIGCSNYPDCTFTLPLPQNGTLY-- 623 Query: 57 KVLEGQVCPACGANLVLRQGRFGMF-IGCINYPECEHTELIDKP 99 + + C V + + G + +GC P C + + Sbjct: 624 --ITAKQCKEHEIKEVKIRTKKGYWNLGC---PYCNYLNWKKEN 662 Score = 42.9 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%) Query: 138 INFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPV 177 + I G+CPEC L++ + A C++ C + Sbjct: 574 VKKDKIVGKCPECGGELVVRQSKAGKRFIGCSNYPDCTFTL 614 >UniRef50_O58356 DNA topoisomerase 1 n=2 Tax=Pyrococcus RepID=TOP1_PYRHO Length = 686 Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 9/78 (11%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPEC-HYPLLI 156 CP+C +V+ + GK F C +P+C P C C P++I Sbjct: 604 GKCPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPILQRGEIIPTNKTC--CNGAPVVI 661 Query: 157 EKKTAQGVKHFCASKQCG 174 ++ C C Sbjct: 662 IREEDGREFEICLDINCK 679 Score = 64.5 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 14 SCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L+++ K F+GCS +P CD P+ + + C + Sbjct: 605 KCPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPILQR----GEIIPTNKTCCNGAPVV 660 Query: 72 VLRQGRFGMFIGCINYPECEH 92 ++R+ F C++ + Sbjct: 661 IIREEDGREFEICLDINCKDW 681 Score = 49.5 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 63 VCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKP---DETAITCPQCRTGHLVQR 117 CP CG +L+++ + F+GC N+P+C+ T I + T TC C +V Sbjct: 605 KCPKCGGDLIVKYNKKTGKRFVGCSNWPKCDVTYPILQRGEIIPTNKTC--CNGAPVVII 662 Query: 118 RSRYGKTFHSC 128 R G+ F C Sbjct: 663 REEDGREFEIC 673 >UniRef50_Q1Q866 UvrD/REP helicase n=4 Tax=Gammaproteobacteria RepID=Q1Q866_PSYCK Length = 955 Score = 78.3 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 14/101 (13%) Query: 2 AKSALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 +KS R CP C L + G++G F CS C + + E Sbjct: 842 SKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGKGCSVGKARVCTKCEAPSVDRE 901 Query: 61 GQ-------------VCPACGANLVLRQGRFGMFIGCINYP 88 + +C CG + +R+ +FG F GC Y Sbjct: 902 HESLCNNRDCGNSMKICNKCGRPMKMRESKFGKFWGCSGYG 942 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 27/123 (21%) Query: 44 VRPLKSSADGHIVKVLEGQVCPAC-GANLVLRQGRFGMFIGCINYPEC------------ 90 + + + + CP C L L +G++G F C + C Sbjct: 835 KYDINIFSKSFQERHRKIFKCPNCVNGYLRLIKGQYGSFYSCSSGKGCSVGKARVCTKCE 894 Query: 91 --------EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRY--PE--CQFAI 138 E + C +C + R S++GK F C Y P+ C+ I Sbjct: 895 APSVDREHESLCNNRDCGNSMKICNKCGRPMKM-RESKFGK-FWGCSGYGIPDDQCKNTI 952 Query: 139 NFK 141 + Sbjct: 953 KIR 955 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 30/120 (25%) Query: 87 YPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ-------FAIN 139 Y ++ + CP C G+L + +YG F+SC C Sbjct: 836 YDINIFSKSFQERHRKIFKCPNCVNGYLRLIKGQYGS-FYSCSSGKGCSVGKARVCTKCE 894 Query: 140 FKPIAGE----------------CPECHYPLLIEKKTAQGVKHFC-----ASKQCGKPVS 178 + E C +C P+ + +++ G C QC + Sbjct: 895 APSVDREHESLCNNRDCGNSMKICNKCGRPMKM-RESKFGKFWGCSGYGIPDDQCKNTIK 953 Score = 52.9 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 4/38 (10%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQY----PACDYVRP 46 + C KCG + +R K G F GCS Y C Sbjct: 916 KICNKCGRPMKMRESKFGKFWGCSGYGIPDDQCKNTIK 953 >UniRef50_C2XKX2 DNA topoisomerase n=7 Tax=Bacillus cereus group RepID=C2XKX2_BACCE Length = 894 Score = 78.0 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 11/134 (8%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP CG +++ G F GCS +P C P K ++ + Sbjct: 629 CP-CGNGIIL---DRGKFFGCSNHPNCSIGLPKKIKDKTIPAVQVKKLFEENKTDLMKGF 684 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETA-ITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 + F + + E + + +E + CP+C+ GH+++R TF C Y Sbjct: 685 KSNGKEFSAYLAFINGEVSFNLPTVEELSLGQCPKCQNGHILKRD-----TFFGCSAYQS 739 Query: 134 -CQFAINFKPIAGE 146 C FAI+ K + Sbjct: 740 GCNFAISAKIKEKK 753 Score = 46.4 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 19/128 (14%) Query: 64 CPACGANLVLRQGRFGMFIGCINYPEC-----EHTELIDKPDETAITCPQCRTGHLVQRR 118 CP CG ++L G F GC N+P C + + P + L++ Sbjct: 629 CP-CGNGIIL---DRGKFFGCSNHPNCSIGLPKKIKDKTIPAVQVKKLFEENKTDLMKGF 684 Query: 119 SRYGKTFHSCDRYPECQFAINFKPIAG----ECPECHYPLLIEKKTAQGVKHFCA--SKQ 172 GK F + + + + N + +CP+C ++ + C+ Sbjct: 685 KSNGKEFSAYLAFINGEVSFNLPTVEELSLGQCPKCQNGHIL----KRDTFFGCSAYQSG 740 Query: 173 CGKPVSAE 180 C +SA+ Sbjct: 741 CNFAISAK 748 Score = 41.4 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 6/44 (13%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECP 148 CP C G ++ R F C +P C + K P Sbjct: 628 QCP-CGNGIILDR-----GKFFGCSNHPNCSIGLPKKIKDKTIP 665 >UniRef50_C7DGI7 DNA topoisomerase n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DGI7_9EURY Length = 727 Score = 77.6 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIE 157 CP+ G LV +RS GK F +C YP+C P C CH P++ Sbjct: 596 GKCPK-DGGDLVIKRSFRGKQFVACSNYPKCTNTYPLPQNAKIVPTGNACEFCHTPIVKI 654 Query: 158 KKTAQGVKHFCASKQC 173 + + C Sbjct: 655 IRRGKPPFEIDLDPNC 670 Score = 64.5 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 14 SCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CPK G +LVI+ G F+ CS YP C PL + V G C C +V Sbjct: 597 KCPKDGGDLVIKRSFRGKQFVACSNYPKCTNTYPLPQN----AKIVPTGNACEFCHTPIV 652 Query: 73 LRQGRFGMFIGCINYPEC 90 R P C Sbjct: 653 KIIRRGKPPFEIDLDPNC 670 >UniRef50_B6YTB3 DNA topoisomerase n=4 Tax=Thermococcus RepID=B6YTB3_THEON Length = 717 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 8/77 (10%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGECPECHYPLLIE 157 CP+C +V+ + GK F C +P+C P C C +++ Sbjct: 636 GKCPKCGGDLVVRYNRKTGKRFVGCSNWPKCNVTYPLLQRGRIIPTNKTC--CDGAPVVK 693 Query: 158 KKTAQGVKHFCASKQCG 174 + C C Sbjct: 694 IREKGREYEICLDMNCK 710 Score = 67.6 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 8/94 (8%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHG--PFLGCSQYPACDYVRPLKSSADGHIVKV 58 + K + CPKCG +LV+R + F+GCS +P C+ PL + Sbjct: 625 IEKGEKTPLVVG-KCPKCGGDLVVRYNRKTGKRFVGCSNWPKCNVTYPLLQRGR----II 679 Query: 59 LEGQVCPACGANLVLRQGRFGMFIGCINYPECEH 92 + C GA +V + + + C++ + Sbjct: 680 PTNKTCCD-GAPVVKIREKGREYEICLDMNCKDW 712 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 63 VCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP CG +LV+R R F+GC N+P+C T + + T C G V + Sbjct: 637 KCPKCGGDLVVRYNRKTGKRFVGCSNWPKCNVTYPLLQRGRIIPTNKTCCDGAPVVKIRE 696 Query: 121 YGKTFHSCDRYPECQ 135 G+ + C C+ Sbjct: 697 KGREYEICLDM-NCK 710 >UniRef50_Q39UP7 DNA topoisomerase I:Restriction endonuclease n=3 Tax=Proteobacteria RepID=Q39UP7_GEOMG Length = 355 Score = 77.2 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 23/123 (18%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKSSADGH- 54 + ++ +CPKCGAE+ R + G F GCS YP C + P+ + D Sbjct: 229 VRHEIFPKAVSSPNCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQ 288 Query: 55 ---------IVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELIDKPD 100 ++CP CG LVLRQ + G F GC+ C+ +D Sbjct: 289 AKVTMQPTIPPVDASKKLCPQCGEELVLRQFQSGPRIGQQFYGCL---TCKKGWPVDTLA 345 Query: 101 ETA 103 + A Sbjct: 346 QHA 348 Score = 64.1 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 27/105 (25%) Query: 102 TAITCPQCR---TGHLVQRRSRYGKTFHSCDRYPECQFAIN-----------------FK 141 ++ CP+C + ++ S G+ F C YP+C+ + Sbjct: 239 SSPNCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQAKVTMQPTIP 298 Query: 142 PIA---GECPECHYPLLIEKKTA----QGVKHFCASKQCGKPVSA 179 P+ CP+C L++ + + + C + + G PV Sbjct: 299 PVDASKKLCPQCGEELVLRQFQSGPRIGQQFYGCLTCKKGWPVDT 343 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 25/103 (24%) Query: 51 ADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELIDKPDETAIT 105 K + CP CGA + R R G F GC YP+C+ + +T Sbjct: 230 RHEIFPKAVSSPNCPKCGAEMKKRVARQGSNAGREFWGCSTYPKCKGIVPVTINQDTDQA 289 Query: 106 -----------------CPQCRTGHLVQR---RSRYGKTFHSC 128 CPQC ++++ R G+ F+ C Sbjct: 290 KVTMQPTIPPVDASKKLCPQCGEELVLRQFQSGPRIGQQFYGC 332 >UniRef50_P40114 DNA topoisomerase 1 n=47 Tax=Bacillus cereus group RepID=TOP1_BACAN Length = 870 Score = 77.2 bits (188), Expect = 3e-13, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP CG +++ G F GCS +P C+ P + ++ + Sbjct: 605 CP-CGNGIIL---DRGKFFGCSNHPNCNKGLPKRVKEKTIPTAQVKKLFEENKTDIIKGF 660 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETA-ITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 + F + + E + + +E + CP+C+ G ++ R KTF C Y Sbjct: 661 KSNGKEFSAYLAFVNGEVSFNLPSVEELSLGQCPKCQKGKILNR-----KTFFGCSEYQN 715 Query: 134 -CQFAINFKPIAGE 146 C F + K + Sbjct: 716 GCDFMLPAKIKGKK 729 Score = 41.7 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 6/56 (10%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT 160 CP C G ++ R F C +P C + + P L E+ Sbjct: 604 QCP-CGNGIILDR-----GKFFGCSNHPNCNKGLPKRVKEKTIPTAQVKKLFEENK 653 >UniRef50_C6AVQ0 UvrD/REP helicase n=2 Tax=Alphaproteobacteria RepID=C6AVQ0_RHILS Length = 972 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 32/127 (25%) Query: 10 RNNESCPKCGAELVIRSGKHGPFL-GCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 + C +CG L++ G+ C CD V P C ACG Sbjct: 864 EKTQECGECGGRLLVARGQDDRMWFRCEHVQHCDNVLP----------------ACQACG 907 Query: 69 ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSC 128 L P+ E+ A CPQC+ G V+R RYG F SC Sbjct: 908 TALPR--------------PKVGSQEVSCGCGANAPKCPQCKDGWFVERSGRYG-PFLSC 952 Query: 129 DRYPECQ 135 RYP C Sbjct: 953 VRYPSCD 959 >UniRef50_Q9KRB2 DNA topoisomerase 1 n=401 Tax=cellular organisms RepID=TOP1_VIBCH Length = 876 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 60/198 (30%), Gaps = 38/198 (19%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQY-----PACDYVRPLKSSADGHIVKVLE- 60 V N CP C + IR+ G FLGCS Y C L V + Sbjct: 598 HIVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDV 657 Query: 61 -------GQVCPACGANL--VLRQGRFGMFIGCINYPECEHTELIDKPDE------TAIT 105 + CP C + L + C N P CE + + + + Sbjct: 658 ETAALRAKKRCPICETAMDAYLIDDKR-KLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVE 716 Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYP------------ 153 C +C + +V + R+GK + C C+ P P Sbjct: 717 CDKCGS-DMVLKNGRFGK-YMGCTND-ACKNTRKILKNGEVAPPKEEPVHFPELPCENSD 773 Query: 154 -LLIEKKTAQGVKHFCAS 170 + + A G+ ++ Sbjct: 774 AYFVLRDGASGLFFAASN 791 Score = 72.2 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR----PLKSSADGHIVKVLEGQVCPA 66 C KCG+++V+++G+ G ++GC+ AC R + + C Sbjct: 713 PTVECDKCGSDMVLKNGRFGKYMGCTN-DACKNTRKILKNGEVAPPKEEPVHFPELPCEN 771 Query: 67 CGANLVLRQGRFGMFIGCINYPECEHTE 94 A VLR G G+F N+P+ T Sbjct: 772 SDAYFVLRDGASGLFFAASNFPKSRETR 799 Score = 69.1 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 37/157 (23%) Query: 52 DGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYP-----ECEHTELIDKPD------ 100 V+ +CP C + +R G+F+GC Y C+ T + + Sbjct: 594 MKPNHIVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVL 653 Query: 101 ---------ETAITCPQCRTGH--LVQRRSRYGKTFHSCDRYPEC----------QFAIN 139 CP C T + R H C P C + Sbjct: 654 EEDVETAALRAKKRCPICETAMDAYLIDDKRK---LHVCGNNPNCEGFIVEEGEFKVKGY 710 Query: 140 FKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 P C +C +++ K G C + C Sbjct: 711 EGPTVE-CDKCGSDMVL-KNGRFGKYMGCTNDACKNT 745 Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 14/148 (9%) Query: 2 AKSALFTVRNNESCPKCGAEL-VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 +R + CP C + C P C+ + + Sbjct: 655 EDVETAALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPT 714 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEH----------TELIDKPDETAITCPQCR 110 + C CG+++VL+ GRFG ++GC N + + C Sbjct: 715 VE-CDKCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCEN-S 772 Query: 111 TGHLVQRRSRYGKTFHSCDRYPECQFAI 138 + V R G F + +P+ + Sbjct: 773 DAYFVLRDGASG-LFFAASNFPKSRETR 799 >UniRef50_C9RSM0 DNA topoisomerase n=49 Tax=Bacilli RepID=C9RSM0_GEOSY Length = 697 Score = 76.4 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 15/124 (12%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + N +CP+CGA L R K G L CS AC Y R L Sbjct: 572 EQVYKAPNLTNLTCPECGALLKERKTKDGRMLVCSNL-ACRYRRRRDPK--------LSN 622 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 + CP C + + +G+ GM+ C +++K DET + L+++ S Sbjct: 623 RRCPQCHRRMEMHEGKAGMYFQC------RPCNIVEKADETKRIAAKGSERALLKKYSPA 676 Query: 122 GKTF 125 ++F Sbjct: 677 NESF 680 Score = 53.7 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI--AGECPECHYP 153 P+ T +TCP+C L +R+++ G+ C C++ P CP+CH Sbjct: 575 YKAPNLTNLTCPECGA-LLKERKTKDGRMLV-CSNL-ACRYRRRRDPKLSNRRCPQCHRR 631 Query: 154 LLIEKKTAQGVKHFC 168 + + + G+ C Sbjct: 632 MEMH-EGKAGMYFQC 645 Score = 47.1 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP 107 K S + L CP CGA L R+ + G + C N P + CP Sbjct: 569 KQSEQVYKAPNLTNLTCPECGALLKERKTKDGRMLVCSNLAC--RYRRRRDPKLSNRRCP 626 Query: 108 QCRTGHLVQRRSRYGKTF 125 QC + + G F Sbjct: 627 QCHRRMEMHE-GKAGMYF 643 Score = 42.1 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 CPEC LL E+KT G C++ C Sbjct: 581 TNLTCPECGA-LLKERKTKDGRMLVCSNLACRYR 613 >UniRef50_C9KMQ0 DNA topoisomerase n=5 Tax=Bacteria RepID=C9KMQ0_9FIRM Length = 821 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 23/194 (11%) Query: 8 TVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADG------HIVKVLE 60 V+ CP+C L R GK+G F GCS YP C K + + Sbjct: 623 EVKGENVCPRCHQGVLTKRKGKNGVFWGCSNYPKCRMTCNDKDGKPDLEDAKARLARRPC 682 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC-----PQCRTGHLV 115 A A+ + Q Y E + I + + Sbjct: 683 AAAPAAVSASALAWQAHPSSAQAAGGYSSAESADDIAALNALFSPADYAARMEADAKSYA 742 Query: 116 QRRSRYGKTF--------HSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHF 167 ++ + ++ + P A + CP C L GV Sbjct: 743 AQQKKASSSWQSWADKPKY--SASPMEHMAKDVASSDYLCPRCREGHLRSIYGRNGVFWG 800 Query: 168 CAS-KQCGKPVSAE 180 C++ +C + Sbjct: 801 CSNYPRCTATFDDD 814 Score = 66.8 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 90 CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 C + + CP+C G L +R+ + G F C YP+C+ N K Sbjct: 614 CAKATDVHMEVKGENVCPRCHQGVLTKRKGKNG-VFWGCSNYPKCRMTCNDK 664 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 1 MAKSALFTVRNNESCPKC-GAELVIRSGKHGPFLGCSQYPAC 41 M A ++ CP+C L G++G F GCS YP C Sbjct: 766 MEHMAKDVASSDYLCPRCREGHLRSIYGRNGVFWGCSNYPRC 807 Score = 51.8 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLV-LRQGRFGMFIGCINYPECEHTELIDKPDE 101 + R L + A ++V VCP C ++ R+G+ G+F GC NYP+C T Sbjct: 609 FTRKLCAKATDVHMEVKGENVCPRCHQGVLTKRKGKNGVFWGCSNYPKCRMTCNDKDGKP 668 Query: 102 T 102 Sbjct: 669 D 669 Score = 45.6 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 +CP C +L GR G+F GC NYP C T D Sbjct: 760 KYSASPMEHMAKDVASSDYLCPRCREGHLRSIYGRNGVFWGCSNYPRCTATFDDDHGKP 818 >UniRef50_A3D9J8 UvrD/REP helicase n=11 Tax=Gammaproteobacteria RepID=A3D9J8_SHEB5 Length = 1004 Score = 76.0 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 20/124 (16%) Query: 2 AKSALFTVRNNESCPKCGAELVI-RSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL- 59 + S + + C +C ++ R+G F CS +P CD+ + + Sbjct: 875 STSLVQRLFKEVKCVRCSTGMLKPRTGNFKSFYSCSHFPLCDHKEQGCELCASPMTRNHF 934 Query: 60 -------------EGQVCPACGANLVLRQGRFGMFIGCINY-----PECEHTELIDKPDE 101 +C CG ++ L+ GRFG F C NY P C +T K Sbjct: 935 AGFKVCLNEACGHISPLCNLCGGDMQLKDGRFGPFWACRNYRGQNLPSCTNTLNKAKLSI 994 Query: 102 TAIT 105 + Sbjct: 995 PSER 998 Score = 67.9 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 E + + + + C +C TG L R + K+F+SC +P C C C Sbjct: 873 EFSTSLVQRLFKEVKCVRCSTGMLKPRTGNF-KSFYSCSHFPLCDH------KEQGCELC 925 Query: 151 HYPLLIEKKTAQGVKHFCASKQCGKP 176 P+ C ++ CG Sbjct: 926 ASPMTRNHFAG---FKVCLNEACGHI 948 >UniRef50_Q3SMS7 DNA topoisomerase n=8 Tax=Proteobacteria RepID=Q3SMS7_THIDA Length = 857 Score = 75.3 bits (183), Expect = 8e-13, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 E+CPKC L +++ K G F+GCS YP CDY RPL + + + PA G ++ Sbjct: 572 EACPKCAKPLFMQASKRGLFIGCSGYPECDYTRPLHPATAEGDNILGKD---PASGLDVK 628 Query: 73 LRQGRFGMFIGCINYPE 89 L GRFG ++ + PE Sbjct: 629 LLSGRFGPYVQIGDMPE 645 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 42/124 (33%), Gaps = 16/124 (12%) Query: 30 GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPE 89 G F S + + + CP C L ++ + G+FIGC YPE Sbjct: 548 GEFW--SGF------EGDLKAKQDVERGCPILEACPKCAKPLFMQASKRGLFIGCSGYPE 599 Query: 90 CEHTELIDKPDETA----ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 C++T + P +G V+ S + PE + A KP Sbjct: 600 CDYTRPLHPATAEGDNILGKDPA--SGLDVKLLSGRFGPYVQIGDMPEDKKAP--KPRRA 655 Query: 146 ECPE 149 P+ Sbjct: 656 SWPK 659 Score = 42.5 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 142 PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 PI CP+C PL ++ + +G+ C+ +C Sbjct: 569 PILEACPKCAKPLFMQA-SKRGLFIGCSGYPECDYT 603 >UniRef50_A1WZY5 DNA topoisomerase III n=6 Tax=Campylobacter RepID=A1WZY5_CAMJJ Length = 730 Score = 74.5 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 19/102 (18%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE-CQFAINFKP------------- 142 D ++ I CPQC G L +R+ +YG F C + + C+ Sbjct: 621 DNENKPKIQCPQCNKGFLTKRKGKYGN-FWGCSEFKQGCKAIYPDNKGTPNFETKQASND 679 Query: 143 IAGECPECHYPLLIEKKTAQG--VKHFCASKQ--CGKPVSAE 180 +CP+C+ L K+ G C+ + C + Sbjct: 680 TTHKCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYDD 721 Score = 70.3 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 14/111 (12%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGAN-LVLRQGRFGMFIGCINYPE-CEHTELIDKPDE 101 + CP C L R+G++G F GC + + C+ +K Sbjct: 610 RIDKNQEFKILDNENKPKIQCPQCNKGFLTKRKGKYGNFWGCSEFKQGCKAIYPDNKGTP 669 Query: 102 T----------AITCPQCRTGHLVQRRSRYGK-TFHSCDRYPE-CQFAINF 140 CPQC G L + +S+ G + C + + C+ Sbjct: 670 NFETKQASNDTTHKCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYD 720 Score = 66.0 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 13/102 (12%) Query: 1 MAKSALFTVRNNES-----CPKCG-AELVIRSGKHGPFLGCSQYPA-CDYVRPLK---SS 50 + K+ F + +NE+ CP+C L R GK+G F GCS++ C + P + Sbjct: 611 IDKNQEFKILDNENKPKIQCPQCNKGFLTKRKGKYGNFWGCSEFKQGCKAIYPDNKGTPN 670 Query: 51 ADGHIVKVLEGQVCPACGANLVLR-QGRFG--MFIGCINYPE 89 + CP C + R + + G + GC + + Sbjct: 671 FETKQASNDTTHKCPQCNKGFLQRIKSKNGNSWWWGCSEFKQ 712 >UniRef50_B1M0P4 DNA topoisomerase n=14 Tax=Alphaproteobacteria RepID=B1M0P4_METRJ Length = 894 Score = 74.1 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 11/83 (13%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ------- 62 N +CP CG +L ++ GK G F+GCS YP C Y R L ++ + Sbjct: 600 NPRTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYTRQLSATGIDGDGDGSSAEGGQPGVR 659 Query: 63 ---VCPACGANLVLRQGRFGMFI 82 PA G + LR GRFG F+ Sbjct: 660 VLGDDPATGLPVTLRDGRFGPFL 682 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 H TCP C +G L + ++G F C YPEC++ Sbjct: 589 PHIFPDKGDGSNPRTCPTCGSGQLSLKLGKFG-AFIGCSNYPECKYTRQLSATG 641 Score = 49.5 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Query: 49 SSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTE 94 + CP CG L L+ G+FG FIGC NYPEC++T Sbjct: 589 PHIFPDKGDGSNPRTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYTR 635 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 4/46 (8%) Query: 135 QFAINFK---PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 K CP C L K G C++ +C Sbjct: 589 PHIFPDKGDGSNPRTCPTCGSGQLSLKLGKFGAFIGCSNYPECKYT 634 >UniRef50_B8EMQ0 DNA topoisomerase n=153 Tax=Alphaproteobacteria RepID=B8EMQ0_METSB Length = 977 Score = 73.3 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Query: 4 SALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVR-----PLKSSADGHIVK 57 + CP CG +L ++ GK G F+GCS YP C + R + G Sbjct: 593 PPKEDGSDPRGCPSCGEGKLSLKLGKFGAFIGCSNYPECKFTRTLAAPDGAEANGGERPG 652 Query: 58 VLEGQVCPACGANLVLRQGRFGMFI 82 V V P G + LR GRFG+++ Sbjct: 653 VKSLGVDPDSGEEITLRDGRFGVYV 677 Score = 61.8 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 86 NYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 N H + CP C G L + ++G F C YPEC+F Sbjct: 584 NEILGPHIFPPKEDGSDPRGCPSCGEGKLSLKLGKFG-AFIGCSNYPECKFTR 635 Score = 49.5 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 49 SSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTE 94 + + CP+CG L L+ G+FG FIGC NYPEC+ T Sbjct: 589 PHIFPPKEDGSDPRGCPSCGEGKLSLKLGKFGAFIGCSNYPECKFTR 635 Score = 41.7 bits (96), Expect = 0.012, Method: Composition-based stats. Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 1/34 (2%) Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 CP C L K G C++ +C Sbjct: 601 PRGCPSCGEGKLSLKLGKFGAFIGCSNYPECKFT 634 >UniRef50_B1L3G6 DNA topoisomerase I n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3G6_KORCO Length = 710 Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 30/109 (27%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVL------------- 59 CP+CG +L +R +G F+ CS YP CD L + Sbjct: 596 KCPECGGDLNMRKSSYGYFIVCSNYPEKCDVKFNLFKNERFEGKFCECGLPLVSGRIKTK 655 Query: 60 ----------------EGQVCPACGANLVLRQGRFGMFIGCINYPECEH 92 C CG +V +QG+FG+++ C N Sbjct: 656 SNRGRGYTRCIANCDRTPLRCAKCGGPMVAKQGKFGVYLKCENCGSTNF 704 Score = 69.5 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPE-CEHTEL-IDKPDETAITCPQCRTGHLVQR--- 117 CP CG +L +R+ +G FI C NYPE C+ C +C + R Sbjct: 596 KCPECGGDLNMRKSSYGYFIVCSNYPEKCDVKFNLFKNERFEGKFC-ECGLPLVSGRIKT 654 Query: 118 RSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 +S G+ + C C C +C P++ K+ GV C + CG Sbjct: 655 KSNRGRGYTRCIA--NCDRT------PLRCAKCGGPMVA-KQGKFGVYLKCEN--CGST 702 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 13/82 (15%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYP-ECQFAINFKPIA----GECPECHYPLL--- 155 CP+C G L R+S YG F C YP +C N C EC PL+ Sbjct: 595 GKCPECG-GDLNMRKSSYG-YFIVCSNYPEKCDVKFNLFKNERFEGKFC-ECGLPLVSGR 651 Query: 156 -IEKKTAQGVKHFCASKQCGKP 176 K C C + Sbjct: 652 IKTKSNRGRGYTRCI-ANCDRT 672 Score = 42.1 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 10 RNNESCPKCGAELVIRSGKHGPFLGCSQ 37 R C KCG +V + GK G +L C Sbjct: 671 RTPLRCAKCGGPMVAKQGKFGVYLKCEN 698 >UniRef50_UPI0000E88005 helicase IV n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E88005 Length = 955 Score = 73.3 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 34/132 (25%) Query: 13 ESCPKCG-AELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CP C + L ++ K G F GC + C Y C C Sbjct: 853 RVCPLCKTSPLTEKTSKDGRNFFGCQNWDLCLY----------------TSAPCQLCNIG 896 Query: 71 LVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDR 130 + + + C N A +CP+C G+L Q+ +G F +C Sbjct: 897 YLEKH---DTYFSCDNK----------HCKHQAESCPKCGDGYLHQKPGEFG-LFLACSN 942 Query: 131 Y--PECQFAINF 140 Y C F N Sbjct: 943 YYTNNCDFTKNL 954 Score = 65.2 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 10/77 (12%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 CP C+T L ++ S+ G+ F C + C + C C+ L Sbjct: 852 KRVCPLCKTSPLTEKTSKDGRNFFGCQNWDLCLYTS------APCQLCNIGYLE----KH 901 Query: 163 GVKHFCASKQCGKPVSA 179 C +K C + Sbjct: 902 DTYFSCDNKHCKHQAES 918 >UniRef50_A0R979 DNA topoisomerase 3 n=95 Tax=Bacteria RepID=TOP3_BACAH Length = 729 Score = 72.9 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 11/119 (9%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 K + +SCP CG ++ +GK G L C C + + V Sbjct: 602 KKYKHDNISTKSCPDCGKPMLEVNGKKGKMLVCQDR-ECGHRKN---------VSRTTNA 651 Query: 63 VCPACGANLVLRQGRFGMFIGC-INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 CP C L LR G C Y E T + E+ + ++++ + Sbjct: 652 RCPQCKKKLELRGEGAGQIFACKCGYREKLSTFQERRKKESGNKADKRDVQKYMKQQKK 710 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 18/133 (13%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP 107 KSS + + + CP CG ++ G+ G + C + EC H + + + CP Sbjct: 598 KSSDKKYKHDNISTKSCPDCGKPMLEVNGKKGKMLVCQDR-ECGHRKNVSRTTNA--RCP 654 Query: 108 QCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHF 167 QC+ L R G+ F +C +C + +K++ Sbjct: 655 QCKK-KLELRGEGAGQIF-AC----KCGYREKLSTFQER---------RKKESGNKADKR 699 Query: 168 CASKQCGKPVSAE 180 K + E Sbjct: 700 DVQKYMKQQKKEE 712 >UniRef50_Q1V889 DNA topoisomerase I n=1 Tax=Vibrio alginolyticus 12G01 RepID=Q1V889_VIBAL Length = 486 Score = 71.8 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 11/90 (12%) Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRY----PECQFAINFKPIAGECPECHYPLL 155 E A CP+C V + G F+ C + +C ++ N K CP C ++ Sbjct: 397 REDAKVCPKCGRLMRVTPNKKDGIHFYGCTGFFETTNKCTYSENIKVKE--CPSCGNDVV 454 Query: 156 IEKKTAQGVKHF-CAS----KQCGKPVSAE 180 +K +G C QC + E Sbjct: 455 KKKNRKEGTYFLACLGYSKTPQCHYTENLE 484 Score = 70.3 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Query: 58 VLEGQVCPACGANLVLRQGRFG--MFIGCINYPECEHTELIDKPDETAITCPQCRTGHLV 115 + +VCP CG + + + F GC + E + + CP C + Sbjct: 397 REDAKVCPKCGRLMRVTPNKKDGIHFYGCTGFFE-TTNKCTYSENIKVKECPSCGNDVVK 455 Query: 116 QRRSRYGKTFHSCDRY---PECQFAINFKPI 143 ++ + G F +C Y P+C + N + + Sbjct: 456 KKNRKEGTYFLACLGYSKTPQCHYTENLEEV 486 Score = 63.7 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 23/97 (23%) Query: 10 RNNESCPKCGAELVIRSGKHG--PFLGCSQY----PACDYVRPLKSSADGHIVKVLEGQV 63 + + CPKCG + + K F GC+ + C Y +K Sbjct: 398 EDAKVCPKCGRLMRVTPNKKDGIHFYGCTGFFETTNKCTYSENIKVKE------------ 445 Query: 64 CPACGANLVLRQGRF--GMFIGCINY---PECEHTEL 95 CP+CG ++V ++ R F+ C+ Y P+C +TE Sbjct: 446 CPSCGNDVVKKKNRKEGTYFLACLGYSKTPQCHYTEN 482 >UniRef50_Q64CK3 DNA topoisomerase n=2 Tax=environmental samples RepID=Q64CK3_9ARCH Length = 681 Score = 71.4 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 15/87 (17%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------IAGECPECHYPLLIE 157 +CP+C + L+ SR GK F C YP C+F++ +C E +P + + Sbjct: 590 GSCPKCDSDLLLL-SSRRGKRFVGCSNYPACEFSLPMPKSGRVVVTEDKCDE--HPYMFK 646 Query: 158 ----KKTAQGVKHFCASKQCGKPVSAE 180 KK A+ C C + Sbjct: 647 LKIIKKGARPWDFGCPY--CNFQQWQD 671 Score = 70.6 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%) Query: 1 MAKSALFTVRNNES---CPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIV 56 + S VR ++ CPKC ++L++ S + G F+GCS YPAC++ P+ S + Sbjct: 575 IGNSLKEAVRADKIVGSCPKCDSDLLLLSSRRGKRFVGCSNYPACEFSLPMPKSGRVVVT 634 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 + + P ++++G GC P C + DK Sbjct: 635 EDKCDE-HPYMFKLKIIKKGARPWDFGC---PYCNFQQWQDKVKSEKK 678 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-FIGCINYPECEHTELIDKPD 100 + +S + CP C ++L+L R G F+GC NYP CE + + K Sbjct: 570 KNRSEIGNSLKEAVRADKIVGSCPKCDSDLLLLSSRRGKRFVGCSNYPACEFSLPMPKSG 629 Query: 101 ETAITCPQCRTGHLVQRRS--RYGKTFH--SCDRYPECQFAINFKPIAGE 146 +T +C + + + G C P C F + E Sbjct: 630 RVVVTEDKCDEHPYMFKLKIIKKGARPWDFGC---PYCNFQQWQDKVKSE 676 >UniRef50_C0QM75 Multiple domain fusion protein (Zn-finger domain associated with topoisomerase type I/adhesin of Type V secretory pathway) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM75_DESAH Length = 502 Score = 71.4 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQ 162 A+ CP C G +V + KT+++C C+F KP ECP C P L E T Sbjct: 397 AMPCPICLDGKIVSETTSKNKTYYTCSNR-ACRFVSWEKPYHFECPLCKNPFLTEFTTPS 455 Query: 163 GVK-HFCASKQCGK 175 G K C C Sbjct: 456 GDKGLKCPRASCTY 469 Score = 40.6 bits (93), Expect = 0.025, Method: Composition-based stats. Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 146 ECPEC-HYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 CP C ++ E + + C+++ C + Sbjct: 399 PCPICLDGKIVSETTSKNKTYYTCSNRACRFVSWEK 434 >UniRef50_D2RGC8 DNA topoisomerase n=2 Tax=Archaeoglobaceae RepID=D2RGC8_ARCPR Length = 648 Score = 71.4 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 10/94 (10%) Query: 82 IGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 +G I E + +CP+C LV+R ++ F C YP+C+F+ Sbjct: 557 LGSIIKEGIEKDREEEMEKNAIGSCPECGGVLLVKRANKR---FIGCSNYPKCKFSRPLP 613 Query: 142 ------PIAGECPECHYPLLIEKKTAQGVKHFCA 169 + C + +L + + FC Sbjct: 614 QKGRLVTTSKVCEKHGVKILRIVEKDRK-WEFCP 646 Score = 69.5 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 7/86 (8%) Query: 1 MAKSALFTVRNNES--CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 + K + N CP+CG L+++ + F+GCS YP C + RPL V Sbjct: 565 IEKDREEEMEKNAIGSCPECGGVLLVKRA-NKRFIGCSNYPKCKFSRPLPQKGRL----V 619 Query: 59 LEGQVCPACGANLVLRQGRFGMFIGC 84 +VC G ++ + + C Sbjct: 620 TTSKVCEKHGVKILRIVEKDRKWEFC 645 Score = 46.4 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 23/104 (22%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 ++ CP CG L++++ FIGC NYP+C+ + + + T Sbjct: 566 EKDREEEMEKNAIGSCPECGGVLLVKRANK-RFIGCSNYPKCKFSRPLPQKGRLVTTSKV 624 Query: 109 CRTG--HLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 C +++ + K CP C Sbjct: 625 CEKHGVKILRIVEKDRKW--------------------EFCPLC 648 >UniRef50_UPI0001BCB37F UvrD/REP helicase n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCB37F Length = 1017 Score = 71.4 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC 150 ++ E+ C C + + ++ S + F+ C YP+C + + I CP C Sbjct: 925 DNEEMTLDEYGEKRICKACGSHMIKRKNSITNEEFYGCYHYPKCDYTEPLENINI-CPIC 983 Query: 151 HYPLLIEKKTAQGVKHFCAS 170 LL K C + Sbjct: 984 GSKLLKSKFEENSYY--CNN 1001 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 11/111 (9%) Query: 26 SGKHGPF-LGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGR--FGMFI 82 ++ F L YP+ ++R L + + + + E ++C ACG++++ R+ F Sbjct: 902 RTRNRTFILFDENYPSI-FIRELFDNEEMTLDEYGEKRICKACGSHMIKRKNSITNEEFY 960 Query: 83 GCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 GC +YP+C++TE ++ + CP C + L +S++ + + C+ Y Sbjct: 961 GCYHYPKCDYTEPLENINI----CPICGSKLL---KSKFEENSYYCNNYKR 1004 Score = 61.4 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 11 NNESCPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACG 68 C CG+ ++ R + F GC YP CDY PL++ +CP CG Sbjct: 936 EKRICKACGSHMIKRKNSITNEEFYGCYHYPKCDYTEPLENI-----------NICPICG 984 Query: 69 ANLVLRQGRFGMFIGCINYPE 89 + L+ + + C NY Sbjct: 985 SKLLKSKFEENSYY-CNNYKR 1004 >UniRef50_B0TT01 UvrD/REP helicase n=4 Tax=Shewanella RepID=B0TT01_SHEHH Length = 1013 Score = 71.0 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 37/134 (27%) Query: 15 CPKC-GAELVIRSGKHGPFLGCS-QYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP+C +L+ R G+ G F CS CD C C + + Sbjct: 896 CPQCKEGKLIPREGRFGLFYTCSLGQDYCDTKID----------------ACSVCNSAPM 939 Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRR-SRYGKTFHSCDRY 131 LR E H +K CP+C +G LV R S+ GK+F +C + Sbjct: 940 LRN-------------ETHHFCSSEKCGHRLPVCPECISGKLVVRTNSKSGKSFLACSGH 986 Query: 132 PE-----CQFAINF 140 CQ+ N Sbjct: 987 KRDDKNSCQYTCNL 1000 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 14/88 (15%) Query: 92 HTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD-RYPECQFAINFKPIAGECPEC 150 + + ++ CPQC+ G L+ R R+G F++C C I+ C C Sbjct: 882 YLSDLAPMYNESLCCPQCKEGKLIPREGRFG-LFYTCSLGQDYCDTKID------ACSVC 934 Query: 151 HY-PLLIEKKTAQGVKHFCASKQCGKPV 177 + P+L HFC+S++CG + Sbjct: 935 NSAPML-----RNETHHFCSSEKCGHRL 957 >UniRef50_D1AS14 DNA topoisomerase type IA central domain protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AS14_SEBTE Length = 764 Score = 70.6 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 45/178 (25%), Gaps = 33/178 (18%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPL---KSSADGHIVK 57 K +++ CPKC L F CS+ C K Sbjct: 606 NKDIKIRHKDDVICPKCNDGFLKNIKTSKYNFWACSE-EKCGSTFNDNKGKPDFTEKRPA 664 Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCI----NYPECEHTELIDKPDETAITCPQCRTGH 113 CP G L +G++G F C NY + + E + +C G Sbjct: 665 EKSEIPCPKDGGILYKIKGKYGDFWKCKTCQQNYKDSNGKPDLSPKKEMKKSAQKCDCGE 724 Query: 114 LVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE----CPECHYPLLIEKKTAQGVKHF 167 + I K + C +C+ + + Sbjct: 725 FLTE--------------------IPTKKDPNKIMLCCEKCNSKYFEQADESIKKWVI 762 Score = 59.1 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 31/163 (19%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLV--LRQGRFGMFIGCINYPECEHTELIDKP 99 V + ++ + +CP C + ++ ++ F C +C T +K Sbjct: 597 KSVIQAMETNKDIKIRHKDDVICPKCNDGFLKNIKTSKYN-FWACS-EEKCGSTFNDNKG 654 Query: 100 DET----------AITCPQCRTGHLVQRRSRYGKTFHSC----DRYPECQFAINFKPIAG 145 I CP+ G L + + +YG F C Y + + P Sbjct: 655 KPDFTEKRPAEKSEIPCPK-DGGILYKIKGKYG-DFWKCKTCQQNYKDSNGKPDLSPKKE 712 Query: 146 ------ECPECHYPL--LIEKKTAQGVKHFCASKQCGKPVSAE 180 +C +C L + KK + C ++C + Sbjct: 713 MKKSAQKC-DCGEFLTEIPTKKDPNKIMLCC--EKCNSKYFEQ 752 >UniRef50_Q1AUL7 DNA topoisomerase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUL7_RUBXD Length = 702 Score = 70.3 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK------PIAGEC 147 + DET CP C +V+R R K F C+ YPEC+ P+ C Sbjct: 583 WNGIRGDETLGPCPNCGRNLVVRRNRRNRKRFAGCEGYPECRTTFPLPQKGDIIPLGTAC 642 Query: 148 PECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 C P + + + C + C K Sbjct: 643 EACGLPEI-KVLGGRRPWVTCINMDCPKKQEQ 673 Score = 55.6 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 8/106 (7%) Query: 10 RNNESCPKCGA--ELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 CP CG + F GC YP C PL D + G C AC Sbjct: 590 ETLGPCPNCGRNLVVRRNRRNRKRFAGCEGYPECRTTFPLPQKGD----IIPLGTACEAC 645 Query: 68 GANLVLRQGRFGMFIGCINY--PECEHTELIDKPDETAITCPQCRT 111 G + G ++ CIN P+ + + + P Sbjct: 646 GLPEIKVLGGRRPWVTCINMDCPKKQEQRRSREETQAGGEEPSEGQ 691 Score = 42.5 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 8/94 (8%) Query: 58 VLEGQVCPACGANLVLRQGRFGM--FIGCINYPECEHTELIDKP---DETAITCPQCRTG 112 CP CG NLV+R+ R F GC YPEC T + + C C Sbjct: 589 DETLGPCPNCGRNLVVRRNRRNRKRFAGCEGYPECRTTFPLPQKGDIIPLGTACEACGLP 648 Query: 113 HLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + R + +C +C + E Sbjct: 649 EIKVLGGRR--PWVTCINM-DCPKKQEQRRSREE 679 >UniRef50_C7NZB3 DNA topoisomerase type IA zn finger domain protein n=5 Tax=Halobacteriaceae RepID=C7NZB3_HALMD Length = 255 Score = 70.3 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 20/158 (12%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLR 74 CP C LV +G + CS C + G C C +R Sbjct: 104 CPACAGTLVRSNGA----VRCSN---C------AERYGLPADATITGGRCRDCRLP-TIR 149 Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 R F C++ + + + CP+C R R G F C+ +P+C Sbjct: 150 TERGRAFELCLDRECESLDDRVIDAFDREWACPECDGDL---RIVRKGGLFAGCEHHPDC 206 Query: 135 Q--FAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS 170 + FAI + C C PL + + C+ Sbjct: 207 EAAFAIPTGVVVDTC-ACGLPLFETAGGRRCLDATCSQ 243 >UniRef50_D0D7V2 DNA topoisomerase n=1 Tax=Citreicella sp. SE45 RepID=D0D7V2_9RHOB Length = 918 Score = 69.9 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%) Query: 7 FTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCP 65 + CPKCG L +++ + G F+GC YP C Y RP+ ++L Sbjct: 624 EDGSDPRICPKCGQGRLHLKTSRTGGFVGCGNYPECTYTRPIAGEGADGEERLLGSHE-- 681 Query: 66 ACGANLVLRQGRFGMFI 82 G + L+ GRFG ++ Sbjct: 682 --GDEVWLKAGRFGPYV 696 Score = 59.9 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 + CP+C G L + SR G F C YPEC + Sbjct: 617 PQLYPPREDGSDPRICPKCGQGRLHLKTSRTGG-FVGCGNYPECTYTRPI 665 Score = 46.8 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 49 SSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 + ++CP CG L L+ R G F+GC NYPEC +T I Sbjct: 617 PQLYPPREDGSDPRICPKCGQGRLHLKTSRTGGFVGCGNYPECTYTRPIAGEGADGEE 674 >UniRef50_C6CZS8 DNA topoisomerase n=5 Tax=cellular organisms RepID=C6CZS8_PAESJ Length = 719 Score = 69.9 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 K + CP+CG L+ GK G L CS C Y R + L + Sbjct: 594 KEYKPHNLTHSRCPECGKLLMEVKGKRGKSLVCSDR-ECSYRRQAE--------PALSNK 644 Query: 63 VCPACGANLVLRQGRFGMFIGC 84 CP C + + G+ G + C Sbjct: 645 RCPQCHKKMEIHNGKAGKYAQC 666 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP--IAGECP 148 T+ + T CP+C L++ + + GK+ C EC + +P CP Sbjct: 591 NETKEYKPHNLTHSRCPECGK-LLMEVKGKRGKSLV-CSDR-ECSYRRQAEPALSNKRCP 647 Query: 149 ECHYPLLIEKKTAQGVKHFC 168 +CH + I G C Sbjct: 648 QCHKKMEIH-NGKAGKYAQC 666 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 10/94 (10%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 +V +K+ + L CP CG L+ +G+ G + C + EC + +P Sbjct: 584 KWVTAVKNETKEYKPHNLTHSRCPECGKLLMEVKGKRGKSLVCSDR-ECSY-RRQAEPAL 641 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ 135 + CPQC + + GK Y +C+ Sbjct: 642 SNKRCPQCHKKMEIH-NGKAGK-------YAQCR 667 Score = 46.8 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 137 AINFKP---IAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 +KP CPEC LL+E K +G C+ ++C AE Sbjct: 593 TKEYKPHNLTHSRCPECGK-LLMEVKGKRGKSLVCSDRECSYRRQAE 638 >UniRef50_A7I6L6 DNA topoisomerase n=5 Tax=Methanomicrobiales RepID=A7I6L6_METB6 Length = 942 Score = 69.5 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 42/121 (34%), Gaps = 11/121 (9%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + N CP CG L I+ + F+GCS+YP C + + V Sbjct: 579 RDRTAEELNLGRCPACGGTLAIKHMRGSTQFIGCSRYPECTF--NIGLPVTQWGWAVRTD 636 Query: 62 QVCPACGANLVL--RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 +C + V R+G IGC P C H + P L + RS Sbjct: 637 DICDKHHLHFVRLVRKGARPWDIGC---PLCHHISSNAESLTEI---PSMDEALLEKARS 690 Query: 120 R 120 + Sbjct: 691 K 691 Score = 59.1 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 25/96 (26%), Gaps = 12/96 (12%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI--------NFKPIA 144 + CP C G L + R F C RYPEC F I Sbjct: 578 IRDRTAEELNLGRCPACG-GTLAIKHMRGSTQFIGCSRYPECTFNIGLPVTQWGWAVRTD 636 Query: 145 GECPECHYPLLIEKKTAQGVK-HFCASKQCGKPVSA 179 C + H + + C C S Sbjct: 637 DICDKHHLHFVRLVRKGARPWDIGC--PLCHHISSN 670 >UniRef50_A8U7S1 DNA topoisomerase n=2 Tax=Lactobacillales RepID=A8U7S1_9LACT Length = 701 Score = 69.1 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 16/119 (13%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 ++ + CP CG L RSG+ G L CS C Y R + Sbjct: 577 ETYKDHALTTKICPDCGELLKERSGRDGKMLICSS-TTCSYKRRKDPK--------VSNH 627 Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP-QCRTGHLVQRRSR 120 C C + + +G+ G NY +C++ + +K + + P + T L+++ ++ Sbjct: 628 RCAQCHRKMEIHEGKNG------NYFKCKYCNITEKIEGKSSKKPSKHETSKLMKKINK 680 Score = 50.2 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 10/105 (9%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 V +K+S + + L ++CP CG L R GR G + C + C + + P Sbjct: 567 RLVTEIKNSTETYKDHALTTKICPDCGELLKERSGRDGKMLICSST-TCSY-KRRKDPKV 624 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + C QC + + G F +C++ + I G+ Sbjct: 625 SNHRCAQCHRKMEIHE-GKNGNYF-------KCKYCNITEKIEGK 661 >UniRef50_B8FJQ0 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJQ0_DESAA Length = 450 Score = 69.1 bits (167), Expect = 7e-11, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLI 156 + A+TCP C G + ++++ GK F +C CQF KP CP C L+ Sbjct: 344 QFEEALAMTCPLCGEGKVKEQQTSMGKIFFACTS-KSCQFISWGKPHHIPCPLCSNSFLV 402 Query: 157 EKKTAQG-VKHFCASKQCGK 175 E + +G C C Sbjct: 403 EAQAIEGHAILKCPRATCSH 422 >UniRef50_C6WSV7 DNA topoisomerase n=4 Tax=Proteobacteria RepID=C6WSV7_METML Length = 864 Score = 68.3 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 2 AKSALF---TVRNNESCPKCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHI 55 K+ + +E+CPKCG L + + G F+GC+ Y P CDY R + +A+ Sbjct: 571 NKADVERPGNELIDEACPKCGKPLQKQLSRFGSFIGCTGYNDTPKCDYKRSIDGTANAGT 630 Query: 56 VKVLEGQVCPACGANLVLRQGRFGMFI 82 V G V A + L G +G ++ Sbjct: 631 DPVSIG-VDAATSKEIYLMNGPYGPYL 656 Score = 42.5 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRY---PECQFAINF 140 CP+C L ++ SR+G F C Y P+C + + Sbjct: 587 CPKCGKP-LQKQLSRFGS-FIGCTGYNDTPKCDYKRSI 622 Score = 42.5 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINY---PECEHTELIDKPDETA 103 + CP CG L + RFG FIGC Y P+C++ ID Sbjct: 584 DEACPKCGKPLQKQLSRFGSFIGCTGYNDTPKCDYKRSIDGTANAG 629 >UniRef50_C1E9E3 DNA topoisomerase n=1 Tax=Micromonas sp. RCC299 RepID=C1E9E3_9CHLO Length = 1227 Score = 67.9 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%) Query: 7 FTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVR---PLKSSADGHIVKVLEGQ 62 + + CP CG L ++ + G F+GCS YP+C + R A G +E Sbjct: 813 EELSSTRRCPGCGTGRLGLKLSRTGGFIGCSNYPSCGHTRQLVNDGDGAVGGGNFPIELG 872 Query: 63 VCPACGANLVLRQGRFGMFI 82 P G ++ ++ G +G +I Sbjct: 873 TDPESGGDVAIQNGPYGPYI 892 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 + + CP C TG L + SR G F C YP C Sbjct: 811 DPEELSSTRRCPGCGTGRLGLKLSRTGG-FIGCSNYPSCGHTRQL 854 Score = 42.9 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 1/48 (2%) Query: 130 RYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 YP F CP C L K + G C++ CG Sbjct: 804 GYPTVAFDPEELSSTRRCPGCGTGRLGLKLSRTGGFIGCSNYPSCGHT 851 >UniRef50_A3DB61 DNA topoisomerase n=1 Tax=Shewanella baltica OS155 RepID=A3DB61_SHEB5 Length = 707 Score = 67.6 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD-ETAITCPQCRTGHLVQRRSR- 120 CP C ++ G+ G F C + +C ++ C C+ G LV+++++ Sbjct: 613 PCPVCQKSMKQLSGKNGKFWVCEDKEQCGLLLNDERGKLPKTTPC-TCKKGVLVRKKAKT 671 Query: 121 YGKTFHSCDRYPE 133 GK + C Y Sbjct: 672 KGKFWWGCSAYQS 684 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVL 73 CP C + SGK+G F C C + + K+ + C LV Sbjct: 613 PCPVCQKSMKQLSGKNGKFWVCEDKEQCGLLLNDERG------KLPKTTPCTCKKGVLVR 666 Query: 74 RQGR-FGMF-IGCINY 87 ++ + G F GC Y Sbjct: 667 KKAKTKGKFWWGCSAY 682 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 11/103 (10%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK--- 141 + + ++T + K + CP C+ ++ S F C+ +C +N + Sbjct: 593 SMFKQGQYTLKLPKVLAVTLPCPVCQKSM--KQLSGKNGKFWVCEDKEQCGLLLNDERGK 650 Query: 142 -PIAGECPECHYPLLIEKKTA-QGV-KHFCA--SKQCGKPVSA 179 P C C +L+ KK +G C+ C + + Sbjct: 651 LPKTTPC-TCKKGVLVRKKAKTKGKFWWGCSAYQSGCQRRLFD 692 >UniRef50_A4J356 DNA topoisomerase n=3 Tax=Clostridia RepID=A4J356_DESRM Length = 799 Score = 67.6 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 23/146 (15%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 CP CG ++V + +G CS Y C + + ++ K E + + Sbjct: 617 KCPVCGRDVVETAKSYG----CSGYKEGCKFAIWKEINSKKISAKQAETLLTKGKTGLIK 672 Query: 73 LRQGRFGM------FIGCINYPECEH-----TELIDKPDETAITCPQCRTGHLVQRRSRY 121 + + G +G + + CP C + RS Sbjct: 673 GFKSKAGKTFDALLVLGEDGKITFGFANAVNDQPGSTGNTALGKCPLCGKDVVENSRS-- 730 Query: 122 GKTFHSCDRYPE-CQFAINFKPIAGE 146 + C Y + C+F I + + Sbjct: 731 ----YGCSGYKDGCKFVIWREIAKKK 752 >UniRef50_A7VHI2 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VHI2_9CLOT Length = 248 Score = 67.6 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 CPKCG ++V + GK+G FLGC+ YP C Y + +K Sbjct: 202 QNIRKNNKEVQRICPKCGGKIVYKRGKYGKFLGCTNYPNCRYTKEMK 248 Score = 56.4 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 31/52 (59%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 +V+ +K + + ++CP CG +V ++G++G F+GC NYP C +T Sbjct: 193 GHVKRIKEAQNIRKNNKEVQRICPKCGGKIVYKRGKYGKFLGCTNYPNCRYT 244 Score = 55.6 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 E CP+C G +V +R +YGK F C YP C++ K Sbjct: 205 RKNNKEVQRICPKCG-GKIVYKRGKYGK-FLGCTNYPNCRYTKEMK 248 Score = 46.0 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%) Query: 139 NFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 N K + CP+C ++ K+ G C + C + Sbjct: 207 NNKEVQRICPKCGGKIVY-KRGKYGKFLGCTNYPNCRYTKEMK 248 >UniRef50_A8II62 DNA topoisomerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8II62_CHLRE Length = 772 Score = 67.2 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPA----CDYVRPLKS-------SADGHIV 56 R+ CPKCG LV++ ++G F+GCS + CD+ RPL S Sbjct: 620 QRDPRRCPKCGVGRLVLKPSRYGGFIGCSNFADEALQCDFARPLLPSEGADGGSCVPFNA 679 Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCIN 86 P G + +R G +G+++ + Sbjct: 680 TERLLGSHPDTGQPVYVRLGPYGLYVQAGD 709 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPE----CQFAINFKPIAGE 146 CP+C G LV + SRYG F C + + C FA P G Sbjct: 620 QRDPRRCPKCGVGRLVLKPSRYGG-FIGCSNFADEALQCDFARPLLPSEGA 669 Score = 40.6 bits (93), Expect = 0.026, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Query: 58 VLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKP 99 + + CP CG LVL+ R+G FIGC N+ + +P Sbjct: 620 QRDPRRCPKCGVGRLVLKPSRYGGFIGCSNFADEALQCDFARP 662 >UniRef50_Q5WAX6 DNA topoisomerase 3 n=137 Tax=Bacteria RepID=TOP3_BACSK Length = 729 Score = 67.2 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 + E CP+CG L+ +GK G C C Y + + + C Sbjct: 600 FRHDNKTGEKCPECGKFLLEVNGKKGKMRVCQDR-ECGYRKN---------IAMTTNARC 649 Query: 65 PACGANLVLRQGRFGMFIGC-INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 P C L LR G C + E + + + ++++++ Sbjct: 650 PKCKKKLELRGEGEGQVFACVCGHREKKAQFEQRRKQNKHKNVSKREVQSYMKKQNK 706 Score = 48.3 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 8/87 (9%) Query: 93 TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK-PIAGECPECH 151 T ++T CP+C L++ + GK + EC + N CP+C Sbjct: 597 TATFRHDNKTGEKCPECGK-FLLEVNGKKGKMRV--CQDRECGYRKNIAMTTNARCPKCK 653 Query: 152 YPLLIEKKTAQGVKHFCASKQCGKPVS 178 L + +G C CG Sbjct: 654 KK-LELRGEGEGQVFACV---CGHREK 676 Score = 45.6 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP 107 K+ G+ CP CG L+ G+ G C + EC + + I CP Sbjct: 594 KADTATFRHDNKTGEKCPECGKFLLEVNGKKGKMRVCQDR-ECGYRKNIAMTTNA--RCP 650 Query: 108 QCRTGHLVQRRSRYGKTFHSC 128 +C+ L R G+ F +C Sbjct: 651 KCKK-KLELRGEGEGQVF-AC 669 >UniRef50_C7RD81 NERD domain protein n=4 Tax=Anaerococcus RepID=C7RD81_ANAPD Length = 255 Score = 67.2 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 18/37 (48%), Positives = 23/37 (62%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 CPKCG +LV R GK+G F+GCS +P C +V Sbjct: 218 ICPKCGGKLVEREGKYGKFIGCSNFPKCRFVVSQNKK 254 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 24/38 (63%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP 99 +CP CG LV R+G++G FIGC N+P+C +K Sbjct: 217 NICPKCGGKLVEREGKYGKFIGCSNFPKCRFVVSQNKK 254 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI 143 CP+C G LV+R +YGK F C +P+C+F ++ Sbjct: 219 CPKCG-GKLVEREGKYGK-FIGCSNFPKCRFVVSQNKK 254 Score = 41.4 bits (95), Expect = 0.014, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Query: 147 CPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 CP+C L+ E++ G C++ +C VS Sbjct: 219 CPKCGGKLV-EREGKYGKFIGCSNFPKCRFVVSQ 251 >UniRef50_Q1RIM1 DNA topoisomerase 1 n=35 Tax=Rickettsiales RepID=TOP1_RICBR Length = 800 Score = 67.2 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 9/84 (10%) Query: 8 TVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC-- 64 ++++ CP C EL ++ GK G FL CS YP C++ + + S D + + Sbjct: 593 ENKDSKVCPSCKTGELSLKLGKFGAFLACSNYPECNFRKSIVSGNDNNEADGEAKDIVNE 652 Query: 65 ------PACGANLVLRQGRFGMFI 82 G + L++G +G +I Sbjct: 653 NKVLGKDKEGIEIYLKKGPYGPYI 676 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 ++ + CP C+TG L + ++G F +C YPEC F Sbjct: 593 ENKDSKVCPSCKTGELSLKLGKFG-AFLACSNYPECNF 629 Score = 46.0 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 51 ADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEH 92 + + +VCP+C L L+ G+FG F+ C NYPEC Sbjct: 587 DYHIFGENKDSKVCPSCKTGELSLKLGKFGAFLACSNYPECNF 629 Score = 40.6 bits (93), Expect = 0.022, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 1/44 (2%) Query: 136 FAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 + CP C L K G C++ +C S Sbjct: 589 HIFGENKDSKVCPSCKTGELSLKLGKFGAFLACSNYPECNFRKS 632 >UniRef50_B7DM26 NERD domain protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DM26_9BACL Length = 246 Score = 67.2 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 23/42 (54%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 + CP+CG EL IR G+ G F GCS YP C + RP Sbjct: 204 EMKRQLAANICPRCGGELRIRKGQRGEFYGCSNYPRCRFTRP 245 Score = 56.8 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 K A CP+C G L R+ + G+ F+ C YP C+F Sbjct: 204 EMKRQLAANICPRCG-GELRIRKGQRGE-FYGCSNYPRCRFTRP 245 Score = 56.8 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 D R + + L +CP CG L +R+G+ G F GC NYP C T Sbjct: 192 DKARQEHIKGIREMKRQLAANICPRCGGELRIRKGQRGEFYGCSNYPRCRFTRP 245 >UniRef50_Q185E5 DNA topoisomerase n=10 Tax=Clostridiales RepID=Q185E5_CLOD6 Length = 706 Score = 66.8 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 10/123 (8%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 CP+CG ++ +GK G L C C+ + + + Sbjct: 580 NKFKHDNLTKNRCPECGKFMLEVNGKKGKMLICEDR-ECNTRK---------TISQVTNS 629 Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 CP C L LR G C + + + E + ++ +++ Sbjct: 630 RCPNCHKKLELRGEGEGRIFTCSCGYREKLSSFNKRKQEEKQKASKKDVNQYLKNQNKNQ 689 Query: 123 KTF 125 +TF Sbjct: 690 ETF 692 Score = 48.3 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 9/105 (8%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 D V +K+S + L CP CG ++ G+ G + C + Sbjct: 570 DIVLEVKNSDNKFKHDNLTKNRCPECGKFMLEVNGKKGKMLICEDRECNTR---KTISQV 626 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 T CP C L R G+ F +C C + Sbjct: 627 TNSRCPNCHK-KLELRGEGEGRIF-TCS----CGYREKLSSFNKR 665 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 8/89 (8%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-KPIAGECPE 149 + T CP+C +++ + GK C+ EC + CP Sbjct: 577 NSDNKFKHDNLTKNRCPECGK-FMLEVNGKKGKMLI-CEDR-ECNTRKTISQVTNSRCPN 633 Query: 150 CHYPLLIEKKTAQGVKHFCASKQCGKPVS 178 CH L + +G C+ CG Sbjct: 634 CHKK-LELRGEGEGRIFTCS---CGYREK 658 >UniRef50_Q5HLZ4 DNA topoisomerase 3 n=9 Tax=Staphylococcus RepID=TOP3_STAEQ Length = 711 Score = 66.8 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 17/120 (14%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + CP CG ++ K+G L C P C + ++ Sbjct: 587 EQKYKHDNLTTTECPTCGKFMIKVKTKNGQMLVCQD-PKCKTKKNIQRK---------TN 636 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP C + L C+ C HTE + D+ G + ++ + Sbjct: 637 ARCPYCKKKMTLFGKGKEAVYRCV----CGHTETQSQMDKRMRDK---TNGKVSRKEMKK 689 Score = 52.1 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 V +KSS + L CP CG ++ + + G + C + P+C+ + I + Sbjct: 578 KVVNKIKSSEQKYKHDNLTTTECPTCGKFMIKVKTKNGQMLVCQD-PKCKTKKNIQRKTN 636 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 CP C+ + + + + + C C + + + K+ Sbjct: 637 A--RCPYCKKKMTLFGKGK--EAVYRCV----CGHTETQSQMDKRMRDKTNGKVSRKEMK 688 Query: 162 Q 162 + Sbjct: 689 K 689 Score = 48.3 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-KPIAGECPE 149 + + T CP C +++ +++ G+ + P+C+ N + CP Sbjct: 585 SSEQKYKHDNLTTTECPTCGK-FMIKVKTKNGQMLV--CQDPKCKTKKNIQRKTNARCPY 641 Query: 150 CHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 C + + K + V C CG + Sbjct: 642 CKKKMTLFGKGKEAVYR-CV---CGHTETQ 667 >UniRef50_Q4QPE8 DNA topoisomerase n=23 Tax=Proteobacteria RepID=Q4QPE8_HAEI8 Length = 686 Score = 66.8 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 + K CPKCGA ++ R+GK+G F GCS YP C ++ + S + Sbjct: 608 LKKGMSLGNIEIRKCPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKN 659 Score = 55.6 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 26/45 (57%) Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 +E + CP CGA ++ R G+ G F GC YP C+H E ID T Sbjct: 616 NIEIRKCPKCGAPMIKRNGKNGAFFGCSAYPNCQHIENIDSKKNT 660 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 CP+C + +R+ F C YP CQ N Sbjct: 618 EIRKCPKCGAPMI--KRNGKNGAFFGCSAYPNCQHIENI 654 Score = 46.0 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%) Query: 145 GECPECHYPLLIEKKTAQGVKHFCA-SKQCGKP 176 +CP+C P++ ++ G C+ C Sbjct: 620 RKCPKCGAPMI-KRNGKNGAFFGCSAYPNCQHI 651 >UniRef50_B0P1A6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P1A6_9CLOT Length = 949 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%) Query: 9 VRNNESCPKCGAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVL--EGQVCP 65 +R ++ CPKCG + ++ G F+ C YP C +K+ GQ C Sbjct: 856 IRLHKKCPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCV 915 Query: 66 ACGANLVLRQGRF--GMFIGCINYP 88 C +L + R+ G++I C YP Sbjct: 916 RCKYSLTAEKSRYGGGLYIHCCGYP 940 Score = 65.2 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 18/90 (20%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP------------IAGECPEC 150 CP+C + ++S GK F SC YP C+ K +C C Sbjct: 859 HKKCPKCGKPMQL-KKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCVRC 917 Query: 151 HYPLLIEK-KTAQGVKHFCASKQCGKPVSA 179 Y L EK + G+ C CG PV + Sbjct: 918 KYSLTAEKSRYGGGLYIHC----CGYPVHS 943 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 10/82 (12%) Query: 61 GQVCPACGANLVLRQGRFGMF-IGCINYPECEHTEL---------IDKPDETAITCPQCR 110 + CP CG + L++ G F I CI YP C+ TE ++ T C +C+ Sbjct: 859 HKKCPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEFVKAEFVEEYFNRNGGTGQKCVRCK 918 Query: 111 TGHLVQRRSRYGKTFHSCDRYP 132 ++ G + C YP Sbjct: 919 YSLTAEKSRYGGGLYIHCCGYP 940 Score = 41.4 bits (95), Expect = 0.015, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%) Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 + +CP+C P+ ++K C C Sbjct: 858 LHKKCPKCGKPMQLKKSPKGKFFISCIGYPGCKTTEF 894 >UniRef50_A0RYH5 DNA topoisomerase I n=1 Tax=Cenarchaeum symbiosum RepID=A0RYH5_CENSY Length = 208 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 9/105 (8%) Query: 81 FIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY-GKTFHSCDRYPE-CQFAI 138 F+ + +P + CP+C TG LV RSR K F C Y C + Sbjct: 103 FLSWSAARKKYVILGTSEPTNGLVRCPECGTGQLVVVRSRTTRKRFLGCSNYYNGCAASA 162 Query: 139 NF------KPIAGECPECHYPLLIEKKTAQGVK-HFCASKQCGKP 176 + + CP C +P+++ + + + CA+++C Sbjct: 163 PLLQRAKLRVLKRACPGCGWPIVMFRYSRKQSWTKQCANRECDTR 207 Score = 41.7 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 14 SCPKCG-AELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 CP+CG +LV+ + FLGCS Y + + + CP CG Sbjct: 127 RCPECGTGQLVVVRSRTTRKRFLGCSNY---YNGCAASAPLLQRAKLRVLKRACPGCGWP 183 Query: 71 LVL-RQGRFGMFIGCINYPECEH 92 +V+ R R + EC+ Sbjct: 184 IVMFRYSRKQSWTKQCANRECDT 206 >UniRef50_C5QM86 DNA topoisomerase n=2 Tax=Staphylococcus RepID=C5QM86_STAEP Length = 712 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 17/120 (14%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + CP CG ++ K+G L C P+C + ++ Sbjct: 588 EQKYKHDNLTTTECPTCGKFMIKVKTKNGQMLVCQD-PSCKTKKNIQRK---------TN 637 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 CP C + L C+ C H+E + D+ +G + ++ + Sbjct: 638 ARCPNCKKKMTLFGRGKEAVYRCV----CGHSETQAQMDKRMKEK---SSGKVSRKEMKK 690 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 9/121 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 D V+ +KSS + L CP CG ++ + + G + C + P C+ + I + Sbjct: 579 DIVQKIKSSEQKYKHDNLTTTECPTCGKFMIKVKTKNGQMLVCQD-PSCKTKKNIQRKTN 637 Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTA 161 CP C+ + R + + + C C + + E + K+ Sbjct: 638 A--RCPNCKKKMTLFGRGK--EAVYRCV----CGHSETQAQMDKRMKEKSSGKVSRKEMK 689 Query: 162 Q 162 + Sbjct: 690 K 690 Score = 46.0 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-KPIAGECPE 149 + + T CP C +++ +++ G+ + P C+ N + CP Sbjct: 586 SSEQKYKHDNLTTTECPTCGK-FMIKVKTKNGQMLV--CQDPSCKTKKNIQRKTNARCPN 642 Query: 150 CHYPLLIEKKTAQGVKHFCASKQCGK 175 C + + + + V C CG Sbjct: 643 CKKKMTLFGRGKEAVYR-CV---CGH 664 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 25/42 (59%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 L + CP+CG EL R+GK GPF GCS YPAC Y + Sbjct: 220 KLLKDADIPVCPRCGGELTKRNGKFGPFYGCSNYPACRYTKN 261 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 75 QGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 +G F C+ C D CP+C G L +R ++G F+ C YP C Sbjct: 199 EGAHRAFNDCVMNQICYEHMGKLLKDADIPVCPRCG-GELTKRNGKFG-PFYGCSNYPAC 256 Query: 135 QFAINF 140 ++ N Sbjct: 257 RYTKNI 262 Score = 56.4 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 38 YPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + C + + G ++K + VCP CG L R G+FG F GC NYP C +T+ Sbjct: 205 FNDC-VMNQICYEHMGKLLKDADIPVCPRCGGELTKRNGKFGPFYGCSNYPACRYTKN 261 Score = 39.8 bits (91), Expect = 0.038, Method: Composition-based stats. Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 2/32 (6%) Query: 146 ECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 CP C L ++ G + C++ C Sbjct: 229 VCPRCGGE-LTKRNGKFGPFYGCSNYPACRYT 259 >UniRef50_B6RA74 DNA topoisomerase n=6 Tax=Alphaproteobacteria RepID=B6RA74_9RHOB Length = 931 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 19/98 (19%) Query: 4 SALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQY--------------PACDYVRPLK 48 + CPKC L ++ + G F+GCS Y P CDY R L Sbjct: 593 PDKEDGSDPRKCPKCDTGRLSLKVSRFGAFVGCSNYNKDKKDGKEPNENPPHCDYTRQLT 652 Query: 49 SSADGHIVKVLEGQ----VCPACGANLVLRQGRFGMFI 82 S D +G + P G + LR GRFG ++ Sbjct: 653 SGGDSDAGAAADGPQVLGIDPETGLEVSLRTGRFGPYV 690 Score = 52.1 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 6/93 (6%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRS 119 C + + +N H + CP+C TG L + S Sbjct: 561 WNPFHEICDEVIKRSN---TEVLDALNETLKAHVFPDKEDGSDPRKCPKCDTGRLSLKVS 617 Query: 120 RYGKTFHSCDRYPECQFAINFKPIAGECPECHY 152 R+G F C Y + +P P C Y Sbjct: 618 RFG-AFVGCSNYNK-DKKDGKEPNENP-PHCDY 647 >UniRef50_A8SXH4 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SXH4_9FIRM Length = 1162 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 ++ + + CP+CG +LV RSGK G F+GCS +P C + + Sbjct: 1117 EEAKSAPAKMSMICPECGKKLVERSGKFGKFIGCSGFPKCRFTQS 1161 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 22/39 (56%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 +CP CG LV R G+FG FIGC +P+C T+ Sbjct: 1123 PAKMSMICPECGKKLVERSGKFGKFIGCSGFPKCRFTQS 1161 Score = 53.7 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 P + ++ CP+C LV+R ++GK F C +P+C+F + Sbjct: 1123 PAKMSMICPECGK-KLVERSGKFGK-FIGCSGFPKCRFTQS 1161 >UniRef50_Q28MI5 DNA topoisomerase n=13 Tax=Rhodobacterales RepID=Q28MI5_JANSC Length = 907 Score = 66.4 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%) Query: 11 NNESCPKCG-AELVIRSGK-HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQ---VCP 65 + CP CG L +R+ + G F+GCS YP C Y RP + + Sbjct: 628 DPRLCPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGPPDPEAEASAIPPDGKLLGE 687 Query: 66 ACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 G + + +GRFG ++ E + Sbjct: 688 DQGDEIRIFKGRFGPYVQRGAMTEENKKPPRQSIPKD 724 Score = 65.2 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%) Query: 77 RFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF 136 R G + IN H CP C G L R +R G F C YPEC++ Sbjct: 603 RIGEVLDKINEVLEPHLFPDPGDGTDPRLCPNCGVGRLSMRTARAGGAFIGCSAYPECRY 662 Query: 137 AINFKPIA 144 F P Sbjct: 663 TRPFGPPD 670 Score = 43.7 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFG-MFIGCINYPECEHTELIDKP 99 L+ + ++CP CG L +R R G FIGC YPEC +T P Sbjct: 610 KINEVLEPHLFPDPGDGTDPRLCPNCGVGRLSMRTARAGGAFIGCSAYPECRYTRPFGPP 669 Query: 100 DETA 103 D A Sbjct: 670 DPEA 673 >UniRef50_C3QAX1 NERD domain-containing protein n=6 Tax=Bacteroides RepID=C3QAX1_9BACE Length = 246 Score = 66.0 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 CP+CG L++R GK+G F GCS +P C + Sbjct: 213 VCPQCGGHLILRKGKYGTFYGCSNFPTCKFTIN 245 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CPQC GHL+ R+ +YG TF+ C +P C+F IN Sbjct: 210 NQGVCPQCG-GHLILRKGKYG-TFYGCSNFPTCKFTIN 245 Score = 56.8 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/33 (51%), Positives = 24/33 (72%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 VCP CG +L+LR+G++G F GC N+P C+ T Sbjct: 213 VCPQCGGHLILRKGKYGTFYGCSNFPTCKFTIN 245 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 136 FAINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 + + G CP+C L++ K G + C++ C +++ Sbjct: 203 YRSSRLINQGVCPQCGGHLILRK-GKYGTFYGCSNFPTCKFTINS 246 >UniRef50_D2J7M2 Putative uncharacterized protein n=2 Tax=Staphylococcus aureus RepID=D2J7M2_STAAU Length = 201 Score = 66.0 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 28/43 (65%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 S NNE CP+C +LV+R+GK+G FLGCS YP C Y + Sbjct: 158 SINPDFSNNEKCPRCNHKLVVRTGKNGQFLGCSNYPNCKYTKN 200 Score = 55.2 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 + I+ CP+C LV R + G+ F C YP C++ N Sbjct: 154 KWIISINPDFSNNEKCPRC-NHKLVVRTGKNGQ-FLGCSNYPNCKYTKNI 201 Score = 53.3 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 41 CDYVRPLKSSADGH----IVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 CD V ++S + CP C LV+R G+ G F+GC NYP C++T+ Sbjct: 142 CDVVMKDRTSLSKWIISINPDFSNNEKCPRCNHKLVVRTGKNGQFLGCSNYPNCKYTKN 200 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 2/41 (4%) Query: 137 AINFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 +CP C++ L++ + G C++ C Sbjct: 159 INPDFSNNEKCPRCNHKLVV-RTGKNGQFLGCSNYPNCKYT 198 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 66.0 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 MAK +V CPKCG E++ R+G++G F GC +P C Y + Sbjct: 175 MAKLQKKSVV--FVCPKCGGEMIRRNGRYGEFWGCGNFPKCRYTQN 218 Score = 58.7 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 84 CINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 C+ +C + CP+C G +++R RYG+ F C +P+C++ N Sbjct: 165 CVMNQKCFEEMAKLQKKSVVFVCPKCG-GEMIRRNGRYGE-FWGCGNFPKCRYTQNI 219 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 25/50 (50%) Query: 46 PLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + K VCP CG ++ R GR+G F GC N+P+C +T+ Sbjct: 169 QKCFEEMAKLQKKSVVFVCPKCGGEMIRRNGRYGEFWGCGNFPKCRYTQN 218 Score = 41.7 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%) Query: 141 KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 K + CP+C ++ + G C + +C Sbjct: 181 KSVVFVCPKCGGEMI-RRNGRYGEFWGCGNFPKCRYT 216 >UniRef50_A6DJX4 DNA topoisomerase n=2 Tax=Bacteria RepID=A6DJX4_9BACT Length = 897 Score = 65.2 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 21/47 (44%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGH 54 + + CPKC + +V + GK GPF CS +P C + Sbjct: 850 EEKTDVKCPKCDSPIVKKVGKRGPFYACSGFPKCKNLANSLDKFTEE 896 Score = 61.8 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 37 QYPACDYVRPLKSSADGHIVKVL---EGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 P + + +G + P A L GR+ I +PE Sbjct: 785 NAPTKRGRMTYDDKSFYESLSSNFANKGSLTPRQSAALKKCVGRYKEKIPAELFPEGLAD 844 Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 ++T + CP+C + +V++ + G F++C +P+C+ N Sbjct: 845 AKSGGEEKTDVKCPKCDSP-IVKKVGKRG-PFYACSGFPKCKNLAN 888 Score = 44.1 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 141 KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGK 175 + +CP+C P++ +K +G + C+ +C Sbjct: 851 EKTDVKCPKCDSPIV-KKVGKRGPFYACSGFPKCKN 885 >UniRef50_C6PBC0 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PBC0_CLOTS Length = 905 Score = 65.2 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 25/42 (59%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACD 42 + KS ++ CPKCG ++IR GK+ FLGCS YP C Sbjct: 858 LNKSNGIGDVVDKRCPKCGNPMIIRKGKYSIFLGCSNYPICK 899 Score = 55.2 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 23/31 (74%) Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYPECE 91 + CP CG +++R+G++ +F+GC NYP C+ Sbjct: 869 DKRCPKCGNPMIIRKGKYSIFLGCSNYPICK 899 Score = 48.7 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CP+C ++ R+ +Y F C YP C+ A+ K Sbjct: 869 DKRCPKCGNPMII-RKGKY-SIFLGCSNYPICKCAVGLK 905 Score = 43.3 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCG 174 + CP+C P++I K + C++ C Sbjct: 868 VDKRCPKCGNPMIIRK-GKYSIFLGCSNYPICK 899 >UniRef50_UPI00006CC0A9 DNA topoisomerase family protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CC0A9 Length = 1049 Score = 65.2 bits (157), Expect = 9e-10, Method: Composition-based stats. Identities = 32/226 (14%), Positives = 64/226 (28%), Gaps = 63/226 (27%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 ++ C KC + +++ + L C+ C+ + + + + + CP C Sbjct: 621 NIQPGSECGKCQKIMELQTNDYQRQLVCN---PCNKSYSIPKNGNLNF----RNERCPLC 673 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA------------------------ 103 ++ G I P C + ++ E + Sbjct: 674 NFQVLEVTTDKG--ISYNICPSCYNNPPYEQDIENSNANSEDSNFKKTSMPCYKCINKNC 731 Query: 104 -----------ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK-------PIAG 145 CP C + ++ + K F C +YP+C +++ P + Sbjct: 732 SLSGGLKNISLYNCPCCNSPIQIRETKKDKKQFIGCTKYPDCDWSVFLPKDILQIFPTSQ 791 Query: 146 ECPECHYP-----LLIEKKTAQGVKH-------FCASKQCGKPVSA 179 EC C L+ K G C C + Sbjct: 792 ECQSCKENNRKSLLVEVKFEEGGQYDTFCRQDNICVYPGCNSSLKE 837 >UniRef50_Q702B0 DNA topoisomerase n=1 Tax=uncultured crenarchaeote RepID=Q702B0_9CREN Length = 715 Score = 65.2 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 10/101 (9%) Query: 88 PECEHTELIDKPDETAITCPQCRTGHLVQRRS-RYGKTFHSCDRYP--ECQFAIN----- 139 E ++ + + + CP+C G +V +S + K F +C ++ C+ Sbjct: 602 NEIKNGLTTSRVEMSYGKCPKCHIGEMVLIKSNKTKKRFLACSKFRVTGCKTITIVPQFG 661 Query: 140 -FKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSA 179 K C C +P+L + C ++ C + +S Sbjct: 662 LIKNDNSVC-TCGWPILRIIFKRFSPRKICVNRSCRENLSN 701 >UniRef50_D2VSX3 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VSX3_NAEGR Length = 1015 Score = 64.9 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 35/157 (22%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 +KS ++ + CP C +++ + + Y C + + G Sbjct: 680 SKSEYESIED--VCPICNFQILNIITQKN-----TSYKLCPHCFNNPPEIENSNESFANG 732 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 C C F GC + K D C +C +V++R Sbjct: 733 FKCFNC------------TFTGC---------KYSRKKDAVVRKCQKCSNNLVVRQRKND 771 Query: 122 GKTFHSCDRYPECQFAINFKP-------IAGECPECH 151 + C +P C+ A+ +C C Sbjct: 772 TSLYIGCKGFPNCKSAVWLPKSIEKADLTTEKCNRCS 808 Score = 45.2 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 50/166 (30%), Gaps = 31/166 (18%) Query: 17 KCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV-LRQ 75 C + ++ FL C C PL S ++ + VCP C ++ + Sbjct: 651 SCKNPMDLKEQDGNNFLHCKN---CSDSYPLPSKSEYESI----EDVCPICNFQILNIIT 703 Query: 76 GRFGMFIGCINYPECEH-TELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC 134 + + C + E ++ C C TF C Sbjct: 704 QKNTSYKLCPHCFNNPPEIENSNESFANGFKCFNC--------------TFTGC------ 743 Query: 135 QFAINFKPIAGECPECHYPLLIE-KKTAQGVKHFCAS-KQCGKPVS 178 +++ + +C +C L++ +K + C C V Sbjct: 744 KYSRKKDAVVRKCQKCSNNLVVRQRKNDTSLYIGCKGFPNCKSAVW 789 >UniRef50_C5S684 DNA topoisomerase type IA zn finger domain protein (Fragment) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S684_CHRVI Length = 402 Score = 64.5 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 + T +CP CG+ + +RSG++G F GCSQYP C R Sbjct: 359 PRVTTRSGTPTCPYCGSSMRLRSGRYGQFWGCSQYPGCKGTRNF 402 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 21/35 (60%) Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELI 96 CP CG+++ LR GR+G F GC YP C+ T Sbjct: 368 PTCPYCGSSMRLRSGRYGQFWGCSQYPGCKGTRNF 402 Score = 52.9 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 T TCP C + + R RYG+ F C +YP C+ N Sbjct: 355 TPTSPRVTTRSGTPTCPYCGS-SMRLRSGRYGQ-FWGCSQYPGCKGTRN 401 >UniRef50_B4EXZ8 DNA topoisomerase n=4 Tax=Enterobacteriaceae RepID=B4EXZ8_PROMH Length = 684 Score = 64.5 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 + SCP C ++V+R G F C +YP C PL G + + Sbjct: 612 EMPLALDLPPMPSCPSCHGKMVLRESSKGRFWSCQRYPDCKGSVPLPEKMQGVTRGMNKR 671 Query: 62 QV 63 + Sbjct: 672 KK 673 Score = 53.3 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 88 PECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI 143 + + +CP C G +V R S G F SC RYP+C+ ++ Sbjct: 607 IKKGGEMPLALDLPPMPSCPSCH-GKMVLRESSKG-RFWSCQRYPDCKGSVPLPEK 660 Score = 46.4 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 K + + CP+C +VLR+ G F C YP+C+ + + + + Sbjct: 608 KKGGEMPLALDLPPMPSCPSCHGKMVLRESSKGRFWSCQRYPDCKGSVPLPEKMQGVTR 666 >UniRef50_UPI00016C5644 hypothetical protein GobsU_04089 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5644 Length = 923 Score = 64.5 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 7/99 (7%) Query: 55 IVKVLEGQVCPAC-GANLVLRQGRF-GMFIGCIN--YPECEHTELIDKPDETAI---TCP 107 CP C +LVLRQ R G F+ C+N EC H + + D Sbjct: 825 DPNQARRFYCPECPNGDLVLRQSRGEGWFLVCVNPQVRECSHRKRLSLEDARLKVRLQGM 884 Query: 108 QCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 +C GH + RS F C+ YP C FA + G Sbjct: 885 RCPAGHPLTARSSGHGFFLGCENYPRCDFAQGLSILEGV 923 Score = 49.5 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 + + L CP G L RS HG FLGC YP CD+ + Sbjct: 872 LEDARLKVRLQGMRCPA-GHPLTARSSGHGFFLGCENYPRCDFAQ 915 >UniRef50_A6EQS9 Hypothetical membrane protein n=1 Tax=unidentified eubacterium SCB49 RepID=A6EQS9_9BACT Length = 252 Score = 64.5 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 23/44 (52%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 CPKC +L+ +SGK+G F GCS YP C Y +K Sbjct: 209 ERNKKEKQRICPKCENQLIEKSGKYGKFYGCSNYPKCRYTLKIK 252 Score = 56.0 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + E CP+C L+++ +YGK F+ C YP+C++ + K Sbjct: 204 KQQINERNKKEKQRICPKC-ENQLIEKSGKYGK-FYGCSNYPKCRYTLKIK 252 Score = 53.3 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 24/52 (46%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 K + ++CP C L+ + G++G F GC NYP+C +T Sbjct: 197 KNHSSQVKQQINERNKKEKQRICPKCENQLIEKSGKYGKFYGCSNYPKCRYT 248 Score = 43.3 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 138 INFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 N K CP+C L+ EK G + C++ +C + Sbjct: 210 RNKKEKQRICPKCENQLI-EKSGKYGKFYGCSNYPKCRYTLK 250 >UniRef50_A5G3C3 DNA topoisomerase, type IA, zn finger domain protein n=11 Tax=Bacteria RepID=A5G3C3_GEOUR Length = 260 Score = 64.1 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKS 49 S + CP CG +V+R+ + G F GCS YP C P++ Sbjct: 210 SDRTDRSEKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTTLPVQP 260 Score = 61.4 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 87 YPECEHTELIDKPDETAITCPQCRTGHLVQ---RRSRYGKTFHSCDRYPECQFAINFKP 142 + + + CP C +++ + S G F C YPEC+ + +P Sbjct: 202 HKQNQTDPSDRTDRSEKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTTLPVQP 260 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELIDK 98 + E ++CPACG +VLR R G F GC YPEC+ T + Sbjct: 201 RHKQNQTDPSDRTDRSEKKLCPACGKPMVLRTARKGSNAGSQFWGCSGYPECKTTLPVQP 260 >UniRef50_Q0W2I3 DNA topoisomerase I n=2 Tax=Euryarchaeota RepID=Q0W2I3_UNCMA Length = 767 Score = 64.1 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 12/104 (11%) Query: 14 SCPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CP CG+ LV+R K F+ CS +P C + V E Sbjct: 588 PCPLCGSALVVRERKSDKNKFIACSGFPNCRNTYNVPPGTLKFDKTVCEKHRLHHVKVTP 647 Query: 72 VLRQGRFGMF-------IGCINYPECEHTELIDKPDETAITCPQ 108 +G G GC P C P P Sbjct: 648 PSTKGPDGKAVRGKAYDFGC---PACRKENPSVMPPCVKTCKPD 688 Score = 59.1 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 18/91 (19%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP-----IAGECPECHYPLLI 156 CP C + +V+ R F +C +P C+ N P C + + Sbjct: 585 DIGPCPLCGSALVVRERKSDKNKFIACSGFPNCRNTYNVPPGTLKFDKTVCEKHRLHHVK 644 Query: 157 -----------EKKTAQGVKHFCASKQCGKP 176 + + C C K Sbjct: 645 VTPPSTKGPDGKAVRGKAYDFGC--PACRKE 673 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 19/122 (15%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGR--FGMFIGCINYPECEHTELIDKP 99 + + CP CG+ LV+R+ + FI C +P C +T + Sbjct: 567 KNRLEIGRILRSGFAADSDIGPCPLCGSALVVRERKSDKNKFIACSGFPNCRNTYNVPPG 626 Query: 100 DETAIT--CPQCRTGHLVQ----RRSRYGK------TFHSCDRYPECQFAIN--FKPIAG 145 C + R H+ + GK C P C+ P Sbjct: 627 TLKFDKTVCEKHRLHHVKVTPPSTKGPDGKAVRGKAYDFGC---PACRKENPSVMPPCVK 683 Query: 146 EC 147 C Sbjct: 684 TC 685 >UniRef50_A0CUH3 Chromosome undetermined scaffold_28, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0CUH3_PARTE Length = 947 Score = 64.1 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 47/183 (25%), Gaps = 32/183 (17%) Query: 15 CPKCGAELVIRSGKHGPFLG-----CSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 C CG +LV +G FL C +++ P Sbjct: 690 CNICGTQLVEIKQINGTFLEICLKCCLGQEKSQNFNSIQNYQPQSQNYNSMSNFQPKSQN 749 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCD 129 N + E C QC+ +++ F C Sbjct: 750 ---------------NNTSNFQQKFFKSSNFEETFKCNQCQNQMKIRQSKLKNSYFFGCL 794 Query: 130 RYPEC-------QFAINFKPIAGECPECHYPLLIEKKTAQGVK-----HFCASKQCGKPV 177 YP+C + + + +C +C+ + + + C +C + Sbjct: 795 GYPQCNQAIFLPDYIKSIQRTDKKCRKCNSNIFQTEYSENSTFQQKSQLLCLYPECSEGF 854 Query: 178 SAE 180 E Sbjct: 855 KTE 857 Score = 42.9 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 51/182 (28%), Gaps = 40/182 (21%) Query: 10 RNNESCPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 C +C ++ IR K + F GC YP C+ D + C C Sbjct: 766 EETFKCNQCQNQMKIRQSKLKNSYFFGCLGYPQCN---QAIFLPDYIKSIQRTDKKCRKC 822 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC--PQCRTGHLVQ--------- 116 N + E++E ++ + C P+C G + Sbjct: 823 N----------------SNIFQTEYSENSTFQQKSQLLCLYPECSEGFKTEWKNQNRESQ 866 Query: 117 ----RRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHY--PLLIEKKTAQGVKHFCAS 170 S+ + F R +C+ F C P L + + C S Sbjct: 867 QTHLNNSKSKQGFLM--RQVQCKKCNQFGHYEDVCNINSKTIPSLADSNQKEKKDKLCPS 924 Query: 171 KQ 172 Sbjct: 925 CG 926 >UniRef50_UPI0001BC8A6C UvrD-like helicase IV n=1 Tax=Pseudomonas syringae pv. tabaci ATCC 11528 RepID=UPI0001BC8A6C Length = 289 Score = 63.7 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 12/85 (14%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRY-GKTFHSCDRYPECQFAINFKPIAGECPE 149 E ++ + A CP C G+LV RR++ G +F +C +P C C + Sbjct: 160 EFAASPEQKNAIATNCPVCTQGNLVNRRNKTTGSSFIACSNWPRCTHT------ESGCRQ 213 Query: 150 CHYPLLIEKKTAQGVKHFCASKQCG 174 C P++ G C + C Sbjct: 214 CDAPMV-----RSGRYRLCTAPACS 233 Score = 45.6 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 34/111 (30%), Gaps = 33/111 (29%) Query: 15 CPKC-GAELVIRSGKH--GPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CP C LV R K F+ CS +P C + C C A + Sbjct: 175 CPVCTQGNLVNRRNKTTGSSFIACSNWPRCTHTESG----------------CRQCDAPM 218 Query: 72 VLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYG 122 V R G + C P C A CP + + RS G Sbjct: 219 V----RSGRYRLCTA-PACSGW---------AAVCPSSGGTMVYRERSMVG 255 >UniRef50_Q1UZD4 DNA topoisomerase n=4 Tax=Bacteria RepID=Q1UZD4_PELUB Length = 863 Score = 63.3 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Query: 12 NESCPKCG-AELVIRSG-KHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC-- 67 N C C L +++ + G F+GCS YP C + RPL + ++ E + Sbjct: 596 NRQCKLCDSGSLSLKNSFRGGAFIGCSNYPDCKFTRPLSKAKAAAQSQLAEPKFIGKHEN 655 Query: 68 GANLVLRQGRFGMFI 82 G ++ L+ GRFG ++ Sbjct: 656 GNDMYLKNGRFGPYL 670 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 24/74 (32%) Query: 73 LRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYP 132 +++ R + +N D C C +G L + S G F C YP Sbjct: 566 VKEKRTREVLDLLNDSLGSLIFERDADGNINRQCKLCDSGSLSLKNSFRGGAFIGCSNYP 625 Query: 133 ECQFAINFKPIAGE 146 +C+F Sbjct: 626 DCKFTRPLSKAKAA 639 >UniRef50_A7IJK3 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IJK3_XANP2 Length = 170 Score = 63.3 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 17/92 (18%) Query: 63 VCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT---------------- 105 CP CG + G++G F C +P C+ I A Sbjct: 60 PCPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDY 119 Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 CP C G +V R + F +C YP C+ Sbjct: 120 CPTCGDGSMVVRSGGAYQPFLACSGYPSCKTT 151 Score = 60.2 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 12/92 (13%) Query: 14 SCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPL---------KSSADGHIVKVLEGQV 63 CPKCG + G++GPF CS +P CD+ R + S+ + G Sbjct: 60 PCPKCGCGTMKRYDGQYGPFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGDY 119 Query: 64 CPACGAN--LVLRQGRFGMFIGCINYPECEHT 93 CP CG +V G + F+ C YP C+ T Sbjct: 120 CPTCGDGSMVVRSGGAYQPFLACSGYPSCKTT 151 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 22/97 (22%) Query: 105 TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE------------------ 146 CP+C G + + +YG F +C +P C F N + Sbjct: 60 PCPKCGCGTMKRYDGQYG-PFEACSTHPRCDFKRNISVESSRAGAPSNRVRIARPMSVGD 118 Query: 147 -CPECHYP-LLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 CP C +++ A C+ C + + Sbjct: 119 YCPTCGDGSMVVRSGGAYQPFLACSGYPSCKTTAALD 155 >UniRef50_B2UHD2 DNA topoisomerase type IA zn finger domain protein n=5 Tax=Burkholderiaceae RepID=B2UHD2_RALPJ Length = 323 Score = 63.3 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLK 48 +AK R SCP CG +LV R+GK G F GCS +P C +K Sbjct: 272 LAKVFEGDSRT-PSCPACGVKLVARNGKSGAFWGCSNFPKCWNRLEMK 318 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 25/97 (25%) Query: 19 GAELVIRSGKHGPFLGCSQY---PACDYVR----------------------PLKSSADG 53 G ++ K G F S Y P +Y + Sbjct: 215 GGSMLAHKVKRGVFWSLSGYVGNPVQEYSELAGIQLLDGPAVLERIRALAEDKQAALLAK 274 Query: 54 HIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPEC 90 CPACG LV R G+ G F GC N+P+C Sbjct: 275 VFEGDSRTPSCPACGVKLVARNGKSGAFWGCSNFPKC 311 >UniRef50_Q8K9P7 DNA topoisomerase 1 n=2 Tax=Gammaproteobacteria RepID=TOP1_BUCAP Length = 853 Score = 63.3 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 30/161 (18%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYP------ECEHTEL-- 95 +P + V C C + ++ G+F+ C+ Y C++T Sbjct: 569 KKPPEEGGMELNTTVPTEIDCSLCNKKMGIKTAVTGVFLSCLGYNSEPNEKRCKNTINLI 628 Query: 96 ----------IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPEC----------Q 135 +K C +C V + K F C P C + Sbjct: 629 SLNDLSTTKKEEKNFHLKNRCKKCNLVMDVYLINENLKIFI-CINNPSCNGYNLKKGIFK 687 Query: 136 FAINFKPIAGECPECHYPLLIEKKTAQGVKHFCASKQCGKP 176 ++N +C +C +L K G C + C Sbjct: 688 KSLNCSLKKIKCEKCKNDMLF-KTGRFGNFFMCINDTCKNT 727 Score = 62.2 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 24/162 (14%) Query: 4 SALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQY------PACDYV-----RPLKSSAD 52 TV C C ++ I++ G FL C Y C S+ Sbjct: 578 ELNTTVPTEIDCSLCNKKMGIKTAVTGVFLSCLGYNSEPNEKRCKNTINLISLNDLSTTK 637 Query: 53 GHIVKVLEGQVCPACGANL--VLRQGRFGMFIGCINYPECEHTE-------LIDKPDETA 103 C C + L +FI CIN P C Sbjct: 638 KEEKNFHLKNRCKKCNLVMDVYLINENLKIFI-CINNPSCNGYNLKKGIFKKSLNCSLKK 696 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAG 145 I C +C+ ++ + R+G F C C+ P Sbjct: 697 IKCEKCKN-DMLFKTGRFGN-FFMCIND-TCKNTRKILPNGE 735 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 5/87 (5%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVR----PLKSSADGHIVKVLEGQVCPACGA 69 C KC +++ ++G+ G F C C R + S +C Sbjct: 698 KCEKCKNDMLFKTGRFGNFFMCIN-DTCKNTRKILPNGEISEPKFEPIPFPDILCEKSNT 756 Query: 70 NLVLRQGRFGMFIGCINYPECEHTELI 96 VLR+G G+F +P+ T Sbjct: 757 WFVLREGISGIFFAANTFPKSRETRSP 783 Score = 52.1 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 1/104 (0%) Query: 3 KSALFTVRNNESCPKCGAEL-VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEG 61 K C KC + V ++ C P+C+ K + L+ Sbjct: 637 KKEEKNFHLKNRCKKCNLVMDVYLINENLKIFICINNPSCNGYNLKKGIFKKSLNCSLKK 696 Query: 62 QVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 C C +++ + GRFG F CIN +++ + + Sbjct: 697 IKCEKCKNDMLFKTGRFGNFFMCINDTCKNTRKILPNGEISEPK 740 >UniRef50_Q18DJ2 DNA topoisomerase I n=2 Tax=Haloquadratum walsbyi RepID=Q18DJ2_HALWD Length = 250 Score = 62.9 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 V ++ + C +CG ++ F C++ + + + + Sbjct: 118 TVINSDIKYPLPKGATVQDECCESCGLPMIEATA-GERFSICLDRECESLDDAVRERFDD 176 Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ--FAINFKPIAGECPECHYPLLIEKKT 160 TCP C + RRS G+ C YP C+ FAI + C C P+ + Sbjct: 177 EWTCPDCGAPMQIIRRS--GRLLAGCSGYPACETAFAIPTGVVVDVC-SCGLPIFETSRG 233 Query: 161 AQGVKHFC 168 Q + C Sbjct: 234 QQCLDGTC 241 Score = 42.1 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 12/113 (10%) Query: 8 TVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 +E C CG ++ + F C C +S D + + CP C Sbjct: 132 ATVQDECCESCGLPMIEATAGE-RFSICLDR-EC------ESLDDAVRERFDDEWTCPDC 183 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR 120 GA + + + + GC YP CE I + C G + SR Sbjct: 184 GAPMQIIRRSGRLLAGCSGYPACETAFAIPTGVVVDV----CSCGLPIFETSR 232 >UniRef50_C5DA42 NERD domain protein n=1 Tax=Geobacillus sp. WCH70 RepID=C5DA42_GEOSW Length = 262 Score = 62.9 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 23/45 (51%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 + CPKCG L++R GK+G F GC+ YP C + + Sbjct: 216 KQKQTEQHIQQNRCPKCGGVLIVRKGKYGTFKGCNNYPKCKFTQS 260 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 + CP+C G L+ R+ +YG TF C+ YP+C+F + Sbjct: 219 QTEQHIQQNRCPKCG-GVLIVRKGKYG-TFKGCNNYPKCKFTQSI 261 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 45 RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + + ++ CP CG L++R+G++G F GC NYP+C+ T+ Sbjct: 210 MQAIQTKQKQTEQHIQQNRCPKCGGVLIVRKGKYGTFKGCNNYPKCKFTQS 260 Score = 39.4 bits (90), Expect = 0.055, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%) Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVS 178 CP+C L++ K G C + +C S Sbjct: 226 QNRCPKCGGVLIVRK-GKYGTFKGCNNYPKCKFTQS 260 >UniRef50_D0NS69 Calpain-like protein n=2 Tax=Phytophthora infestans T30-4 RepID=D0NS69_PHYIN Length = 1206 Score = 62.9 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 22/168 (13%) Query: 8 TVRNNESCPKCGAELVIRSGKH-GPFL----GCSQYPACDYVRPLKSSADGHIVKVLEGQ 62 RN C C + + G+ G G S + C ++ + Sbjct: 1027 RERNTPVCVDCHQRIEVVEGRFSGRMFTLPDGSSVHAEC-----------IDAYQIRTSE 1075 Query: 63 VCPACGANLVLRQGRF-GMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY 121 C CG + GRF G + +N +C + + TA C C +++ ++ Sbjct: 1076 KCIHCGHAIAAIPGRFDGKYYQ-VNGGKCHGECMEEYQMATAQRCVHCTEP-VIKIAGKF 1133 Query: 122 GKTFHSCDRYPECQFAINFKPIAG---ECPECHYPLLIEKKTAQGVKH 166 F+ + F + +C C P+L G + Sbjct: 1134 DGRFYKIEGERLVHFECWEQYQQSVAPKCVHCAQPILQIPGRFDGRFY 1181 >UniRef50_A7HZT1 DNA topoisomerase 3 (DNA topoisomerase III) n=3 Tax=Campylobacter RepID=A7HZT1_CAMHC Length = 716 Score = 62.5 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 12/85 (14%) Query: 101 ETAITCPQCRTGHLVQRRS-RYGKTFHSCDRYPE-CQFAINF---KPI--AGECPECHYP 153 + C +C G L +R S + GK F C + C KP CP+C Sbjct: 620 DKTYPC-KCGKGFLQKRHSQKTGKDFWGCSNWKNGCSEIYPDLNGKPNIPKYFCPKCGSA 678 Query: 154 LLIEKKTAQ-GVKHFCAS---KQCG 174 L K G C+ K C Sbjct: 679 LNRWKNKKGDGYYWSCSGWKTKGCQ 703 Score = 49.8 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 7/79 (8%) Query: 60 EGQVCPACGANLVLRQ--GRFGM-FIGCIN-YPECEHTELIDKPDETAIT--CPQCRTGH 113 + C CG + ++ + G F GC N C CP+C + Sbjct: 621 KTYPC-KCGKGFLQKRHSQKTGKDFWGCSNWKNGCSEIYPDLNGKPNIPKYFCPKCGSAL 679 Query: 114 LVQRRSRYGKTFHSCDRYP 132 + + + SC + Sbjct: 680 NRWKNKKGDGYYWSCSGWK 698 Score = 49.8 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 12/79 (15%) Query: 14 SCPKCGAELVIRSG--KHGP-FLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGA 69 C KCG + + K G F GCS + C + P + + CP CG+ Sbjct: 624 PC-KCGKGFLQKRHSQKTGKDFWGCSNWKNGCSEIYPDLNG-----KPNIPKYFCPKCGS 677 Query: 70 NLVLRQGRF--GMFIGCIN 86 L + + G + C Sbjct: 678 ALNRWKNKKGDGYYWSCSG 696 >UniRef50_C6V581 DNA topoisomerase n=2 Tax=Neorickettsia RepID=C6V581_NEORI Length = 827 Score = 62.5 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLE 60 K V+ + CPKC + + ++G FLGC+ YP C ++ S+ D Sbjct: 588 QKLVSAEVKVGDKCPKCEKGYMHLSVSRYGVFLGCTNYPVCRFIVNSYSTDDDTEYPKQI 647 Query: 61 GQVCPACGANLVLRQGRFGMFIGCINYP 88 Q ++ L +G +G+++ Sbjct: 648 AQ-------DISLHKGPYGIYLKYKGKN 668 Score = 52.5 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CP+C G++ SRYG F C YP C+F +N Sbjct: 598 GDKCPKCEKGYMHLSVSRYG-VFLGCTNYPVCRFIVN 633 Score = 42.1 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 50 SADGHIVKVLEGQVCPAC-GANLVLRQGRFGMFIGCINYPECEHTELIDKPDET 102 +V G CP C + L R+G+F+GC NYP C D+ Sbjct: 587 KQKLVSAEVKVGDKCPKCEKGYMHLSVSRYGVFLGCTNYPVCRFIVNSYSTDDD 640 Score = 39.8 bits (91), Expect = 0.047, Method: Composition-based stats. Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 142 PIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 + +CP+C + + GV C + C V++ Sbjct: 596 KVGDKCPKCEKGYMHLSVSRYGVFLGCTNYPVCRFIVNS 634 >UniRef50_C6XEP4 DNA topoisomerase I n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEP4_METSD Length = 590 Score = 62.2 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 19/36 (52%), Positives = 22/36 (61%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 CPKCG +V R+G GPFLGCS YP C + L Sbjct: 554 CPKCGKGMVQRTGSRGPFLGCSGYPKCKETQQLPKG 589 Score = 59.5 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%) Query: 21 ELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM 80 +L+++ K + S+Y A+ CP CG +V R G G Sbjct: 511 DLIVKGDKTYRSVVSSKYSDLTTELASFGGAEIPRPAPSTVGSCPKCGKGMVQRTGSRGP 570 Query: 81 FIGCINYPECEHTE 94 F+GC YP+C+ T+ Sbjct: 571 FLGCSGYPKCKETQ 584 Score = 54.5 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 T +CP+C G +VQR G F C YP+C+ Sbjct: 544 PRPAPSTVGSCPKCGKG-MVQRTGSRG-PFLGCSGYPKCKETQQLPK 588 Score = 43.3 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%) Query: 138 INFKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 G CP+C ++ + ++G C+ +C + Sbjct: 545 RPAPSTVGSCPKCGKGMVQ-RTGSRGPFLGCSGYPKCKET 583 >UniRef50_Q2B8U1 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B8U1_9BACI Length = 1166 Score = 62.2 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD 52 + CPKCG LV R ++G F GC +P C Y+ K + Sbjct: 1127 KVCPKCGKPLVERKSEYGVFYGCKGFPKCRYIESKKKTIH 1166 Score = 53.7 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPI 143 CP+C LV+R+S YG F+ C +P+C++ + K Sbjct: 1129 CPKCGKP-LVERKSEYG-VFYGCKGFPKCRYIESKKKT 1164 Score = 49.8 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 22/39 (56%) Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDE 101 VCP CG LV R+ +G+F GC +P+C + E K Sbjct: 1128 VCPKCGKPLVERKSEYGVFYGCKGFPKCRYIESKKKTIH 1166 Score = 42.1 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%) Query: 145 GECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 CP+C PL+ E+K+ GV + C +C S + Sbjct: 1127 KVCPKCGKPLV-ERKSEYGVFYGCKGFPKCRYIESKK 1162 >UniRef50_UPI000174264A helicase, UvrD/REP family protein n=2 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI000174264A Length = 692 Score = 62.2 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRR-SRYGKTFHSCDRYPECQFAINFKPIAGE--- 146 + + + CP C+TG LV R+ S+ GK F C YP C + N I + Sbjct: 618 NYLIQGRYGETDLVNCPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYNNIEILSKPIL 677 Query: 147 CPECHYPL 154 CP C Sbjct: 678 CPACQSGF 685 Score = 49.1 bits (115), Expect = 8e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 64 CPAC--GANLVLRQGRFGM-FIGCINYPECEHTELIDKPDETAITCPQCRTG 112 CP C G ++ + + G F+GC +YP C + + I CP C++G Sbjct: 633 CPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYNNIEILSKPILCPACQSG 684 Score = 47.5 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 10/61 (16%) Query: 15 CPKC--GAELVIRSGKHGP-FLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CP C G ++ ++ + G F+GCS YP C+ +I + + +CPAC + Sbjct: 633 CPWCKTGRLVIRKNSQTGKNFVGCSHYPNCNQSYN-------NIEILSKPILCPACQSGF 685 Query: 72 V 72 Sbjct: 686 W 686 >UniRef50_D1CHV6 DNA topoisomerase type IA zn finger domain protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CHV6_THET1 Length = 206 Score = 62.2 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 23/46 (50%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 ++ + + R C +CG + +RS G F GC+ YP C + P Sbjct: 160 ISAAQVERPRAEHRCERCGGLMELRSSSRGQFWGCTNYPRCRHTLP 205 Score = 47.5 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 + C +C G + R S G+ F C YP C+ + Sbjct: 164 QVERPRAEHRCERCG-GLMELRSSSRGQ-FWGCTNYPRCRHTLP 205 Score = 46.8 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 18/42 (42%) Query: 54 HIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + + C CG + LR G F GC NYP C HT Sbjct: 164 QVERPRAEHRCERCGGLMELRSSSRGQFWGCTNYPRCRHTLP 205 >UniRef50_Q4L0S6 TraE-like protein n=3 Tax=Gammaproteobacteria RepID=Q4L0S6_HAEIN Length = 750 Score = 62.2 bits (149), Expect = 9e-09, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 18/122 (14%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 E C CG LV++ K F C+ YP C +P + CP C Sbjct: 622 EVKGEPC-SCGQGVLVLKKFKDSEFFACTAYPTCKITKPALNGLPAPN--------CPCC 672 Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCP----QCRTGHLVQRRSRYGK 123 +++ R G+F C N + I + T + +T + +S+ GK Sbjct: 673 NSHV--RVNEKGVF--CSNEGCLKLWRTIGGKNLTDSQLVALLTKGKTAKIKGFKSKAGK 728 Query: 124 TF 125 F Sbjct: 729 EF 730 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 11/75 (14%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN---FKPIAGECPECHYPLLIEK 158 C C G LV ++ + F +C YP C+ P CP C+ + + + Sbjct: 624 KGEPC-SCGQGVLVLKKFKD-SEFFACTAYPTCKITKPALNGLPAPN-CPCCNSHVRVNE 680 Query: 159 KTAQGVKHFCASKQC 173 K FC+++ C Sbjct: 681 KG-----VFCSNEGC 690 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 + A ++ ++G+ C LVL++ + F C YP C+ T+ A C Sbjct: 611 EQIEAAKNVKLEVKGEPCSCGQGVLVLKKFKDSEFFACTAYPTCKITKP-ALNGLPAPNC 669 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDR 130 P C + V + C Sbjct: 670 PCCNSHVRVNEKG------VFCSN 687 >UniRef50_B9TJX8 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJX8_RICCO Length = 290 Score = 61.8 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 15 CPKCGAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKCG +L + ++G F+GC+ Y P CDY R L A+ V+ GQ ++ Sbjct: 2 CPKCGRQLQKQLSRYGSFIGCTGYNATPKCDYKRNLDGEANAASEPVVIGQ-DVDTQKDI 60 Query: 72 VLRQGRFGMFI 82 L G +G ++ Sbjct: 61 YLMNGPYGPYL 71 Score = 40.6 bits (93), Expect = 0.024, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRY---PECQFAINF 140 CP+C L ++ SRYG F C Y P+C + N Sbjct: 2 CPKCGR-QLQKQLSRYGS-FIGCTGYNATPKCDYKRNL 37 >UniRef50_Q6YRP6 Slr6108 protein n=1 Tax=Synechocystis sp. PCC 6803 RepID=Q6YRP6_SYNY3 Length = 269 Score = 61.8 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRPLKSSADGHIV 56 + CPKCG +V+R K GP F GCS YP C + +K++ + Sbjct: 197 NQYQNADENTAPECPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKTAEEKAAD 256 Query: 57 KVLEGQV 63 + + Sbjct: 257 DINKMHK 263 Score = 56.0 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 87 YPECEHTELIDKPDETAITCPQCRTGHLVQRRSRY---GKTFHSCDRYPECQFAINFKPI 143 + + + + + TA CP+C ++++ G++F C YP+C+ +N K Sbjct: 191 HIQKVKNQYQNADENTAPECPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVNIKTA 250 Query: 144 AGE 146 + Sbjct: 251 EEK 253 Score = 47.9 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 K CP CG N+VLR+ + G F GC +YP+C Sbjct: 193 QKVKNQYQNADENTAPECPKCGKNMVLRKSKSGPNVGRSFWGCSSYPQCRGIVN 246 >UniRef50_A7JLN3 Predicted protein n=3 Tax=Francisella RepID=A7JLN3_FRANO Length = 257 Score = 61.8 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRP 46 KS ++ E CPKC LV R+ K G FLGCS +P C Y + Sbjct: 209 KSLKEKYKSEEICPKCSGLLVERTIKKGKKQGHTFLGCSNFPKCRYTKS 257 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%) Query: 90 CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGK----TFHSCDRYPECQFAIN 139 +H + + + ++ CP+C +G LV+R + GK TF C +P+C++ + Sbjct: 205 YKHVKSLKEKYKSEEICPKC-SGLLVERTIKKGKKQGHTFLGCSNFPKCRYTKS 257 Score = 46.0 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 + + K ++CP C LV R + G F+GC N+P+C +T+ Sbjct: 199 NNIVNNYKHVKSLKEKYKSEEICPKCSGLLVERTIKKGKKQGHTFLGCSNFPKCRYTKS 257 Score = 43.7 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 5/55 (9%) Query: 129 DRYPECQFAINFKPIAGECPECHYPLLIE--KKTAQG--VKHFCAS-KQCGKPVS 178 + Y + CP+C L+ KK + C++ +C S Sbjct: 203 NNYKHVKSLKEKYKSEEICPKCSGLLVERTIKKGKKQGHTFLGCSNFPKCRYTKS 257 >UniRef50_A4RYV6 DNA topoisomerase (Fragment) n=5 Tax=cellular organisms RepID=A4RYV6_OSTLU Length = 840 Score = 61.4 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 19/93 (20%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKS------------------ 49 V CP C L ++ K G F+GCS+YP C + PL Sbjct: 677 VSEARRCPSCKIGRLGLKPSKAGGFIGCSRYPECGFTHPLHPIRGAIVSDTDDPDFVATV 736 Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFGMFI 82 ++ V PA G + LR G +G ++ Sbjct: 737 EDPDAVMYPKVLGVDPATGKEISLRLGPYGPYL 769 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 D A CP C+ G L + S+ G F C RYPEC F PI G Sbjct: 672 DSDDVVSEARRCPSCKIGRLGLKPSKAGG-FIGCSRYPECGFTHPLHPIRGA 722 >UniRef50_B9XT21 Restriction endonuclease n=1 Tax=bacterium Ellin514 RepID=B9XT21_9BACT Length = 263 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 84 CINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSR---YGKTFHSCDRYPECQFAINF 140 C N ++ E++ ++T CP+C + +++ R G F C YP+C + +N Sbjct: 203 CENLNWKQNPEILSLLNDTRKLCPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYILNI 262 Score = 56.8 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 5/41 (12%) Query: 11 NNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRP 46 + CPKC +E+V+R+ GP F GCS YP C Y+ Sbjct: 221 TRKLCPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYILN 261 Score = 49.5 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 41 CDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 C+ K + + + ++CP C + +VLR G F GC YP+C + Sbjct: 203 CEN-LNWKQNPEILSLLNDTRKLCPKCESEMVLRTSGRGPNRGNQFWGCSTYPKCHYILN 261 >UniRef50_Q3BT95 DNA topoisomerase n=14 Tax=Gammaproteobacteria RepID=Q3BT95_XANC5 Length = 670 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL 59 + S V + +CP+CGA RSGK GPF CS+YP C P++S + Sbjct: 605 SASLSIKVPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGTLPVESGTSKRVASRS 662 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 11/68 (16%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ 116 KV G CP CGA R G+ G F C YP+C+ T ++ T V Sbjct: 611 KVPHGPACPQCGAPTHQRSGKSGPFWSCSRYPDCKGTLPVES-----------GTSKRVA 659 Query: 117 RRSRYGKT 124 RSR G Sbjct: 660 SRSRRGGR 667 Score = 52.1 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 CPQC +RS F SC RYP+C+ + + Sbjct: 613 PHGPACPQCGAPT--HQRSGKSGPFWSCSRYPDCKGTLPVE 651 >UniRef50_C5U8C5 DNA topoisomerase (Fragment) n=1 Tax=Methanocaldococcus infernus ME RepID=C5U8C5_9EURY Length = 344 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 14/33 (42%), Positives = 25/33 (75%) Query: 14 SCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 +CP+CG+ LV++ GK+G F+GC+ +P C + + Sbjct: 310 TCPRCGSPLVVKEGKYGKFIGCTNFPKCKFTKS 342 Score = 52.5 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 30/54 (55%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + + ++ CP CG+ LV+++G++G FIGC N+P+C+ T+ Sbjct: 289 KKFKEKEVEIGKNLTNKEVVGTCPRCGSPLVVKEGKYGKFIGCTNFPKCKFTKS 342 Score = 51.4 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 TCP+C + LV + +YGK F C +P+C+F + + Sbjct: 309 GTCPRCGSP-LVVKEGKYGK-FIGCTNFPKCKFTKSLE 344 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 140 FKPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 K + G CP C PL++ K+ G C + +C S E Sbjct: 304 NKEVVGTCPRCGSPLVV-KEGKYGKFIGCTNFPKCKFTKSLE 344 >UniRef50_UPI00017C3C60 PREDICTED: hypothetical protein n=1 Tax=Bos taurus RepID=UPI00017C3C60 Length = 819 Score = 61.0 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 97 DKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 + CP+C G L + + F C RYP C++ N K Sbjct: 773 NSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLK 817 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 3 KSALFTVRNNESCPKCG-AELVIR-SGKHGPFLGCSQYPACDYVRPLKSS 50 K + CPKCG L +G +G FLGCS+YP C Y + LK Sbjct: 770 KQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLKRR 819 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLR--QGRFGMFIGCINYPECEHTELIDKP 99 ++ + + +CP CG + + G +G F+GC YP C++T+ + + Sbjct: 761 FIHIPQDEYKQLNSNIPPEWLCPKCGQGRLRKITNGPYGAFLGCSRYPNCKYTKNLKRR 819 >UniRef50_Q4SVN5 DNA topoisomerase (Fragment) n=3 Tax=Tetraodontidae RepID=Q4SVN5_TETNG Length = 984 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 16/98 (16%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGK--HGPFLGCSQYPACDYVRPLKSSADGHIVKVL 59 + + CP CG ++V++ + +G +L C YPAC + + Sbjct: 619 QQQDMEIPLPVRKCPHCGRDMVLKKKREGNGKYLTCVGYPACKSAVWFPDTV---LEVSR 675 Query: 60 EGQVCPACG---ANLVLRQGRFG--------MFIGCIN 86 + VCP C +++ + R G F+GCI Sbjct: 676 DESVCPTCQPAPVHMLKFKFRRGSLPPVMPLEFVGCIG 713 Score = 53.3 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGR--FGMFIGCINYPECEHTELIDKP----DET 102 + L + CP CG ++VL++ R G ++ C+ YP C+ Sbjct: 617 EEQQQDMEIPLPVRKCPHCGRDMVLKKKREGNGKYLTCVGYPACKSAVWFPDTVLEVSRD 676 Query: 103 AITCPQCRTG--HLVQRRSRYGK-------TFHSCDRYPECQFAI 138 CP C+ H+++ + R G F C C + Sbjct: 677 ESVCPTCQPAPVHMLKFKFRRGSLPPVMPLEFVGCIG--GCDETL 719 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 19/118 (16%) Query: 79 GMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 ++G E + ++ P CP C +++++ + +C YP C+ A+ Sbjct: 606 SPYLGAAQEITEEQQQDMEIP-LPVRKCPHCGRDMVLKKKREGNGKYLTCVGYPACKSAV 664 Query: 139 NFKPI-------AGECPECH---YPLLIEKKTAQG-------VKHFCASKQCGKPVSA 179 F CP C +L K C C + + Sbjct: 665 WFPDTVLEVSRDESVCPTCQPAPVHMLKFKFRRGSLPPVMPLEFVGCIG-GCDETLRE 721 >UniRef50_A5CF60 DNA topoisomerase n=2 Tax=Orientia tsutsugamushi RepID=A5CF60_ORITB Length = 788 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 9 VRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRP-----LKSSADGHIVKVLEGQ 62 +++ C C +L ++ K+G FL C+ YP+C++ R + Sbjct: 592 ETDHKLCTLCKVGKLSLKLSKYGAFLACNNYPSCNFTRNIAAAFENNDNLPKGKNNKAIG 651 Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 + L++G FG +I ++ + P + PQ Sbjct: 652 YSDDMQKTIYLKEGPFGWYIQAGEDSTNKNDKPKRVPISVISSSPQ 697 Score = 48.7 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 + + C C+ G L + S+YG F +C+ YP C F N Sbjct: 583 NFLFPVQNGETDHKLCTLCKVGKLSLKLSKYG-AFLACNNYPSCNFTRNI 631 Score = 42.5 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 52 DGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCR 110 + ++C C L L+ ++G F+ C NYP C T I E P+ + Sbjct: 586 FPVQNGETDHKLCTLCKVGKLSLKLSKYGAFLACNNYPSCNFTRNIAAAFENNDNLPKGK 645 Query: 111 TGH 113 Sbjct: 646 NNK 648 >UniRef50_C5V7F2 Restriction endonuclease n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7F2_9PROT Length = 326 Score = 60.6 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 9 VRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 SC CG ++V R+GK G F GC+ +P C + Sbjct: 280 EYTTPSCSSCGIKMVRRTGKRGDFWGCANFPKCRQMLN 317 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 20/45 (44%) Query: 60 EGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAI 104 C +CG +V R G+ G F GC N+P+C + I Sbjct: 282 TTPSCSSCGIKMVRRTGKRGDFWGCANFPKCRQMLNVTLAQRQGI 326 Score = 46.0 bits (107), Expect = 6e-04, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 101 ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 T +C C +V+R + G F C +P+C+ +N Sbjct: 281 YTTPSCSSCGI-KMVRRTGKRG-DFWGCANFPKCRQMLN 317 >UniRef50_A4HPI6 DNA topoisomerase n=9 Tax=Trypanosomatidae RepID=A4HPI6_LEIBR Length = 951 Score = 60.2 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 59/200 (29%), Gaps = 55/200 (27%) Query: 15 CPKCGAEL--VIRSG-----KHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPAC 67 C CG + V R+G + + C C+ + L + + V CP C Sbjct: 625 CGTCGRHMDLVERAGERDHDREVWSVRCRG---CNKMHRLPNGRLNTLEPVNPPHTCPLC 681 Query: 68 GANLVLRQGR------------FGM------FIGCI-----------------NYPECEH 92 G ++ R FG GC +C Sbjct: 682 GFVVLRVTNREKQTSYHVCPHCFGSPPRAWNVTGCGTAGADALLPDIEAAAEFRCFQCTA 741 Query: 93 TELIDKPDETAI--TCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF------KPIA 144 + K E TC C L R G F SC YP C +++ KP Sbjct: 742 DCPLAKGLEAIGITTCIACHQHELRLRPGPNG-FFLSCRGYPSCHLSVSLPAAASVKPSP 800 Query: 145 -GECPECHYPLLIEKKTAQG 163 CP C+ LL + + Sbjct: 801 SQRCPACNAVLLTFDFSGRQ 820 Score = 46.8 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 6/69 (8%) Query: 14 SCPKCGAE-LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLV 72 +C C L +R G +G FL C YP+C L ++A VK Q CPAC A L+ Sbjct: 756 TCIACHQHELRLRPGPNGFFLSCRGYPSCHLSVSLPAAA---SVKPSPSQRCPACNAVLL 812 Query: 73 L--RQGRFG 79 GR G Sbjct: 813 TFDFSGRQG 821 Score = 45.6 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 40/157 (25%), Gaps = 44/157 (28%) Query: 6 LFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSA-------------D 52 L V +CP CG ++ + + + Y C + A Sbjct: 669 LEPVNPPHTCPLCGFVVLRVTNREKQ----TSYHVCPHCFGSPPRAWNVTGCGTAGADAL 724 Query: 53 GHIVKVLEGQVCPAC----------------------GANLVLRQGRFGMFIGCINYPEC 90 ++ C C L LR G G F+ C YP C Sbjct: 725 LPDIEAAAEFRCFQCTADCPLAKGLEAIGITTCIACHQHELRLRPGPNGFFLSCRGYPSC 784 Query: 91 EHTELID----KPDETAITCPQCRTGHLVQ-RRSRYG 122 + + + CP C L R G Sbjct: 785 HLSVSLPAAASVKPSPSQRCPACNAVLLTFDFSGRQG 821 >UniRef50_B3PMD8 DNA topoisomerase I n=3 Tax=Mycoplasma RepID=B3PMD8_MYCA5 Length = 620 Score = 60.2 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSG--KHGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 + S + SCP+CG+ L+ R+ KH F+GCS +PAC Y + G Sbjct: 550 IEISIMPQEFLERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSENADGTPTGQKTYK 609 Query: 59 LEGQV 63 Sbjct: 610 PRYYK 614 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 I + +CP+C + L + S+ F C +P C+++ N Sbjct: 553 SIMPQEFLERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSEN 597 Score = 43.3 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQG--RFGMFIGCINYPECEHTELIDKPD 100 Y K+ + + + CP CG+ L+ R + FIGC N+P C ++E D Sbjct: 543 YDDASKTIEISIMPQEFLERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSENADGTP 602 Query: 101 ETAITCPQCRTGHLVQRRSRYG 122 T ++ S+ Sbjct: 603 TGQKT----YKPRYYKKSSKAN 620 Score = 42.1 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 2/46 (4%) Query: 137 AINFKPIAGECPECHYPLLIEKKTAQ-GVKHFCAS-KQCGKPVSAE 180 + + + CP C LL + + C++ C +A+ Sbjct: 554 IMPQEFLERSCPRCGSTLLYRNNSKKHTKFIGCSNFPACRYSENAD 599 >UniRef50_C5A9D2 DNA topoisomerase n=1 Tax=Burkholderia glumae BGR1 RepID=C5A9D2_BURGB Length = 722 Score = 59.9 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%) Query: 96 IDKPDETAITCPQCRTGHLVQRR----SRYGKTFHSCDRYPECQFAINFK 141 + A CP+C+ G+LV R + G+TFH C+ YPEC+ ++ K Sbjct: 673 PRPAPDGAKKCPKCKKGYLVPRTVKNGPKAGQTFHGCNNYPECKHSVWPK 722 Score = 48.3 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%) Query: 13 ESCPKCG-AELVIRSGKHGP-----FLGCSQYPACDYVRPLK 48 + CPKC LV R+ K+GP F GC+ YP C + K Sbjct: 681 KKCPKCKKGYLVPRTVKNGPKAGQTFHGCNNYPECKHSVWPK 722 Score = 42.1 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 6/40 (15%) Query: 145 GECPECHYPLLIEKKTAQGV-----KHFCAS-KQCGKPVS 178 +CP+C L+ + G H C + +C V Sbjct: 681 KKCPKCKKGYLVPRTVKNGPKAGQTFHGCNNYPECKHSVW 720 >UniRef50_C1MSJ2 DNA topoisomerase n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MSJ2_9CHLO Length = 1243 Score = 59.9 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 12/88 (13%) Query: 7 FTVRNNESCPKC-GAELVIRSGKHGPFLGCSQY---PACDYVRPLKSSADGHIVKVLEGQ 62 T+R + CP C L ++ K+G F+GCS Y C Y RP+ ++ + Sbjct: 803 ATLRASRRCPACVDGRLGLKLSKNGGFIGCSNYNTDTKCAYARPISTTNGDDAESMRTDP 862 Query: 63 --------VCPACGANLVLRQGRFGMFI 82 V P + +R+G +G ++ Sbjct: 863 WLSDGEIGVDPETSRTVSVRRGPYGPYV 890 Score = 44.4 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 4/46 (8%) Query: 103 AITCPQCRTGHLVQRRSRYGKTFHSCDRYP---ECQFAINFKPIAG 145 + CP C G L + S+ G F C Y +C +A G Sbjct: 808 SRRCPACVDGRLGLKLSKNGG-FIGCSNYNTDTKCAYARPISTTNG 852 >UniRef50_A1SXM8 DNA-binding NERD domain-containing protein n=18 Tax=Proteobacteria RepID=A1SXM8_PSYIN Length = 269 Score = 59.9 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRP 46 + V ++CPKCG +++R K G F GCS +P C V Sbjct: 218 VEAKQAPKVIEEKTCPKCGTLMILREAKKGKNAGNQFWGCSNFPQCRTVVD 268 Score = 51.4 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSR---YGKTFHSCDRYPECQFAIN 139 TCP+C T +++ + G F C +P+C+ ++ Sbjct: 222 QAPKVIEEKTCPKCGTLMILREAKKGKNAGNQFWGCSNFPQCRTVVD 268 Score = 48.3 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Query: 53 GHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELI 96 KV+E + CP CG ++LR+ + G F GC N+P+C Sbjct: 221 KQAPKVIEEKTCPKCGTLMILREAKKGKNAGNQFWGCSNFPQCRTVVDH 269 >UniRef50_Q9NG98 DNA topoisomerase 3-alpha n=10 Tax=Eukaryota RepID=TOP3A_DROME Length = 1250 Score = 59.9 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 8/80 (10%) Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFH-SCDRYPECQFAINFKP-------IAGE 146 ++ CP+C L + + + ++ C+ +P+C+ A+ + Sbjct: 647 PSHGIIQSIFQCPKCNEAPLALKPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDEC 706 Query: 147 CPECHYPLLIEKKTAQGVKH 166 CP C + K + Sbjct: 707 CPTCGDGYRMLKFRLSTPYY 726 Score = 52.9 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 15 CPKCGAE---LVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 CPKC L + + G ++GC+ +P C L + + + CP CG Sbjct: 658 CPKCNEAPLALKPKKNQQGWYIGCNNFPDCKNAVWLPTECKD---ASVLDECCPTCGDGY 714 Query: 72 VLRQGR 77 + + R Sbjct: 715 RMLKFR 720 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 64 CPACGAN---LVLRQGRFGMFIGCINYPECEHTELIDKP----DETAITCPQCRTGHLVQ 116 CP C L ++ + G +IGC N+P+C++ + CP C G+ + Sbjct: 658 CPKCNEAPLALKPKKNQQGWYIGCNNFPDCKNAVWLPTECKDASVLDECCPTCGDGYRML 717 Query: 117 R 117 + Sbjct: 718 K 718 >UniRef50_C7NA27 DNA topoisomerase n=20 Tax=Fusobacteriaceae RepID=C7NA27_LEPBD Length = 800 Score = 59.5 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 26/103 (25%) Query: 19 GAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK--------------------- 57 G V++ G+ G +L Y + L + K Sbjct: 639 GNRYVLKVGRFGEYLESENYEKDEKRMSLPAELKQKYKKGAVIELDGVLQINDEMKRLQE 698 Query: 58 -----VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + E VC CG ++ GRFG F+ C YPEC+ + Sbjct: 699 IDRKIIEEAGVCEFCGKPYEIKTGRFGKFLACTGYPECKTIKN 741 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 + + + C CG I++G+ G FL C+ YP C ++ +K+ Sbjct: 696 LQEIDRKIIEEAGVCEFCGKPYEIKTGRFGKFLACTGYPECKTIKNIKTG 745 >UniRef50_C0ZFC8 Putative uncharacterized protein n=2 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZFC8_BREBN Length = 238 Score = 59.5 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 K C KC +++V+R G G F GC YP C ++ Sbjct: 192 KKVIAQFQSKTHICDKCRSQMVLRKGAKGEFYGCKGYPKCRNIK 235 Score = 48.3 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 + +C C + +VLR+G G F GC YP+C + Sbjct: 199 QSKTHICDKCRSQMVLRKGAKGEFYGCKGYPKCRNI 234 Score = 45.2 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Query: 100 DETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFA 137 C +CR+ ++++ ++ F+ C YP+C+ Sbjct: 199 QSKTHICDKCRSQMVLRKGAK--GEFYGCKGYPKCRNI 234 >UniRef50_C4V616 DNA topoisomerase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V616_9FIRM Length = 711 Score = 59.5 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 90 CEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF 140 C+ I CP C G +++R+ ++G F C +P+C+ + Sbjct: 610 CDAARTAQITGGEGIPCPACGRGVMLKRKGKHG-DFWGCSAFPQCRMTADD 659 Score = 58.7 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGA 69 CP CG ++ R GKHG F GCS +P C + + GA Sbjct: 622 EGIPCPACGRGVMLKRKGKHGDFWGCSAFPQCRMTADDAGGKPNFAGRRVPRGSADGMGA 681 Query: 70 N 70 + Sbjct: 682 H 682 Score = 51.4 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGAN-LVLRQGRFGMFIGCINYPECEHTELI 96 + R L +A + EG CPACG ++ R+G+ G F GC +P+C T Sbjct: 605 FARDLCDAARTAQITGGEGIPCPACGRGVMLKRKGKHGDFWGCSAFPQCRMTADD 659 Score = 45.6 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 4/50 (8%) Query: 134 CQFAINFKPIAG---ECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSA 179 C A + G CP C +++++K G C++ QC Sbjct: 610 CDAARTAQITGGEGIPCPACGRGVMLKRKGKHGDFWGCSAFPQCRMTADD 659 >UniRef50_B0G7K1 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G7K1_9FIRM Length = 365 Score = 59.5 bits (142), Expect = 6e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKSSADGHIVK 57 + + CP CG ELV+R+ + G F GCS +P C Y+ + + + Sbjct: 302 QKEIPATTGKIICPVCGGELVLRTARRGANTGKQFYGCSSFPRCRYILNIAENLEKSDTS 361 Query: 58 VLEG 61 + Sbjct: 362 HSKK 365 Score = 50.2 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Query: 106 CPQCRTGHLVQRRSRYG----KTFHSCDRYPECQFAINFKPIAGE 146 CP C G LV R +R G K F+ C +P C++ +N + Sbjct: 314 CPVCG-GELVLRTARRGANTGKQFYGCSSFPRCRYILNIAENLEK 357 Score = 43.3 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 49 SSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTELIDKPDETA 103 I +CP CG LVLR R G F GC ++P C + I + E + Sbjct: 299 EEVQKEIPATTGKIICPVCGGELVLRTARRGANTGKQFYGCSSFPRCRYILNIAENLEKS 358 Query: 104 IT 105 T Sbjct: 359 DT 360 >UniRef50_A3WL27 Probable transmembrane protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WL27_9GAMM Length = 280 Score = 59.1 bits (141), Expect = 6e-08, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%) Query: 8 TVRNNESCPKCGAELVIRSGKHGP-----FLGCSQYPACDYVRP 46 T + CPKC +V R + GP F GC ++P C RP Sbjct: 237 TRPTTQVCPKCEGPMVKRIARRGPNRGESFWGCKRFPKCHGTRP 280 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 3/75 (4%) Query: 68 GANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGH---LVQRRSRYGKT 124 G + + G T CP+C + +R G++ Sbjct: 206 GKPIHIIDGETFHRFVRQREKAAVRFPPSPNTRPTTQVCPKCEGPMVKRIARRGPNRGES 265 Query: 125 FHSCDRYPECQFAIN 139 F C R+P+C Sbjct: 266 FWGCKRFPKCHGTRP 280 Score = 48.7 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 18/59 (30%), Gaps = 5/59 (8%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGM-----FIGCINYPECEHTEL 95 QVCP C +V R R G F GC +P+C T Sbjct: 222 RQREKAAVRFPPSPNTRPTTQVCPKCEGPMVKRIARRGPNRGESFWGCKRFPKCHGTRP 280 >UniRef50_Q58078 Uncharacterized protein MJ0664 n=4 Tax=Methanocaldococcus RepID=Y664_METJA Length = 301 Score = 59.1 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 + + ++ +CP CGA+L + K G FLGC+ YP C Y R K + Sbjct: 256 DIMSKIDDNTCPWCGAKLRVVRTKKGEFLGCTNYPNCLYRRFPKKN 301 Score = 45.6 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 27/58 (46%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKP 99 K+ A I+ ++ CP CGA L + + + G F+GC NYP C + K Sbjct: 244 KERLCNKNPAILDIMSKIDDNTCPWCGAKLRVVRTKKGEFLGCTNYPNCLYRRFPKKN 301 Score = 45.6 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 2/45 (4%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKP 142 TCP C V R + F C YP C + K Sbjct: 258 MSKIDDNTCPWCGAKLRVVRTKK--GEFLGCTNYPNCLYRRFPKK 300 >UniRef50_B5EPF0 DNA topoisomerase type IA zn finger domain protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPF0_ACIF5 Length = 739 Score = 59.1 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRP 46 + T + +CP+CG+ +V R+ + G PF GCS+YP+C RP Sbjct: 689 QATPSPTQPHAVTCPQCGSRMVRRTARRGSRAGRPFWGCSRYPSCTGTRP 738 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 74 RQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQ---RRSRYGKTFHSCDR 130 R GR F A+TCPQC + + + R SR G+ F C R Sbjct: 673 RGGRPTNF---GATSIAGTQATPSPTQPHAVTCPQCGSRMVRRTARRGSRAGRPFWGCSR 729 Query: 131 YPECQFAINF 140 YP C Sbjct: 730 YPSCTGTRPI 739 Score = 50.6 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 18/51 (35%), Gaps = 5/51 (9%) Query: 50 SADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTEL 95 + CP CG+ +V R R G F GC YP C T Sbjct: 688 TQATPSPTQPHAVTCPQCGSRMVRRTARRGSRAGRPFWGCSRYPSCTGTRP 738 >UniRef50_D0UIR3 TraE-like protein n=1 Tax=Aggregatibacter actinomycetemcomitans D11S-1 RepID=D0UIR3_AGGAD Length = 760 Score = 59.1 bits (141), Expect = 8e-08, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 11/84 (13%) Query: 1 MAKSA-LFTVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKV 58 + ++ L E C +CG L++R G F CS YP C ++P ++A Sbjct: 609 IKQAENLKVELKGEPC-ECGKGVLILRKTDKGTFFSCSSYPECKVIKPALNNAPMPNCPC 667 Query: 59 LEGQV--------CPACGANLVLR 74 G + C CG + + Sbjct: 668 CNGNLKGNSAVIECEKCGLKIWRK 691 Score = 46.8 bits (109), Expect = 4e-04, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 10/100 (10%) Query: 47 LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITC 106 + ++ L+G+ C L+LR+ G F C +YPEC+ + C Sbjct: 607 EQIKQAENLKVELKGEPCECGKGVLILRKTDKGTFFSCSSYPECKVIKPALNNAPM-PNC 665 Query: 107 PQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 P C + C+ +C I K + Sbjct: 666 PCCNGNL------KGNSAVIECE---KCGLKIWRKLMNKT 696 Score = 46.4 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 20/74 (27%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN---FKPIAG------------- 145 C +C G L+ R++ G TF SC YPEC+ P+ Sbjct: 620 KGEPC-ECGKGVLILRKTDKG-TFFSCSSYPECKVIKPALNNAPMPNCPCCNGNLKGNSA 677 Query: 146 --ECPECHYPLLIE 157 EC +C + + Sbjct: 678 VIECEKCGLKIWRK 691 >UniRef50_C5Z4V5 DNA topoisomerase (Fragment) n=12 Tax=cellular organisms RepID=C5Z4V5_SORBI Length = 1094 Score = 58.7 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 12/92 (13%) Query: 10 RNNESCPKC-GAELVIRSGKHGP--FLGCSQYPACDYVRPLKSSADGHIVKVLEGQV--- 63 +++ CP C L + ++G F+GC ++P C Y+ S + E Sbjct: 921 KDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYIARSLSQQEDETEPTEESPKSFT 980 Query: 64 ------CPACGANLVLRQGRFGMFIGCINYPE 89 P + L+QG +G ++ + Sbjct: 981 PRLLGVMPDSDQKVFLKQGPYGYYVQIGEDKK 1012 Score = 51.4 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYG-KTFHSCDRYPECQFA 137 D+ + CP C G L + SRYG F CDR+P+C++ Sbjct: 916 FPDVDKDSRICPSCSEGTLRFKVSRYGEGYFIGCDRHPKCKYI 958 >UniRef50_C4ZF87 DNA topoisomerase I n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZF87_EUBR3 Length = 461 Score = 58.7 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS 50 K+ + CP+CG L + G G F+GC YP C + R ++ Sbjct: 413 EKARQKQRYDPNICPECGGRLRLIQGPFGKFMGCENYPTCKFNRRVRKK 461 Score = 54.1 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 29 HGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYP 88 G CS+ P + + + +CP CG L L QG FG F+GC NYP Sbjct: 392 KGKCYECSRNPNINTEVNVSEEKARQKQRYDPN-ICPECGGRLRLIQGPFGKFMGCENYP 450 Query: 89 ECEH 92 C+ Sbjct: 451 TCKF 454 Score = 44.1 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 33/136 (24%), Gaps = 23/136 (16%) Query: 23 VIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGR----- 77 V + K FL C +C CG Sbjct: 334 VEKRQKRQEFLKVINSGDC------PEDRVLTDEGGRRWVLCEFCGKFAPASAFASYGGF 387 Query: 78 ----FGMFIGCINYPECEHTEL------IDKPDETAITCPQCRTGHLVQRRSRYGKTFHS 127 G C P K CP+C G L + +GK F Sbjct: 388 GKLNKGKCYECSRNPNINTEVNVSEEKARQKQRYDPNICPECG-GRLRLIQGPFGK-FMG 445 Query: 128 CDRYPECQFAINFKPI 143 C+ YP C+F + Sbjct: 446 CENYPTCKFNRRVRKK 461 >UniRef50_Q9X3X7 DNA topoisomerase 1 n=7 Tax=cellular organisms RepID=TOP1_ZYMMO Length = 1217 Score = 58.7 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 CP C TG L + R+G F +C YPEC++ Sbjct: 582 PWLFPDKGDGHDPRECPSCHTGRLALKGGRFG-AFIACSNYPECKYTR 628 Score = 58.7 bits (140), Expect = 1e-07, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%) Query: 11 NNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVL 59 + CP C L ++ G+ G F+ CS YP C Y R DG Sbjct: 593 DPRECPSCHTGRLALKGGRFGAFIACSNYPECKYTRGFGQGEDGVDDNEP 642 Score = 47.9 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACG-ANLVLRQGRFGMFIGCINYPECEHTE 94 ++ P G E CP+C L L+ GRFG FI C NYPEC++T Sbjct: 578 KFLEPWLFPDKGDGHDPRE---CPSCHTGRLALKGGRFGAFIACSNYPECKYTR 628 Score = 42.5 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%) Query: 144 AGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 ECP CH L K G C++ +C Sbjct: 594 PRECPSCHTGRLALKGGRFGAFIACSNYPECKYT 627 >UniRef50_A5FDL0 NERD domain protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FDL0_FLAJ1 Length = 259 Score = 58.7 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 17/41 (41%), Positives = 22/41 (53%) Query: 7 FTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPL 47 CPKCG +++ R GK G FLGC YP C+Y + Sbjct: 218 KKTIQEIKCPKCGNKMIQRQGKFGIFLGCKSYPKCNYTQQE 258 Score = 52.1 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 43 YVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 ++ +K + K ++ CP CG ++ RQG+FG+F+GC +YP+C +T+ Sbjct: 205 HINSVKQRINFLDKKTIQEIKCPKCGNKMIQRQGKFGIFLGCKSYPKCNYTQ 256 Score = 47.9 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 + +DK I CP+C ++QR+ ++G F C YP+C + Sbjct: 211 QRINFLDKKTIQEIKCPKCGN-KMIQRQGKFG-IFLGCKSYPKCNYTQ 256 Score = 40.6 bits (93), Expect = 0.027, Method: Composition-based stats. Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 2/46 (4%) Query: 135 QFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC-ASKQCGKPVSA 179 F +CP+C ++ ++ G+ C + +C Sbjct: 214 NFLDKKTIQEIKCPKCGNKMIQ-RQGKFGIFLGCKSYPKCNYTQQE 258 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 58.7 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 1 MAKSALFTVRNNES-CPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 + K ++ E CP+CG + R+G+ G F GC YP C + Sbjct: 181 LEKMPAAKKQSKEKICPECGLPMKKRNGRFGEFWGCIGYPDCRHTEN 227 Score = 53.7 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 26/52 (50%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 + K + ++CP CG + R GRFG F GCI YP+C HTE Sbjct: 176 YLAKELEKMPAAKKQSKEKICPECGLPMKKRNGRFGEFWGCIGYPDCRHTEN 227 Score = 48.7 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%) Query: 94 ELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 K CP+C G +++R+ F C YP+C+ N Sbjct: 184 MPAAKKQSKEKICPEC--GLPMKKRNGRFGEFWGCIGYPDCRHTEN 227 Score = 39.4 bits (90), Expect = 0.056, Method: Composition-based stats. Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 2/35 (5%) Query: 143 IAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKP 176 CPEC P+ ++ G C C Sbjct: 192 KEKICPECGLPM-KKRNGRFGEFWGCIGYPDCRHT 225 >UniRef50_C3SA84 DNA topoisomerase n=1 Tax=Brachypodium distachyon RepID=C3SA84_BRADI Length = 856 Score = 58.7 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 12 NESCPKC-GAELVIRSGKHGP--FLGCSQYPACDYV---------RPLKSSADGHIVKVL 59 + CP C L + + G F+GC ++P C Y+ + Sbjct: 676 SRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIARTLSDEDDENEACEETKWNFEPR 735 Query: 60 EGQVCPACGANLVLRQGRFGMFI 82 V P + L+QG +G +I Sbjct: 736 LLGVMPNLNEKVFLKQGPYGYYI 758 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYG-KTFHSCDRYPECQFA----INFKPIAGECPEC 150 D+ + CP C G L + SR+G F CDR+P+C++ + C E Sbjct: 669 FPDLDDASRICPSCSEGTLRFKVSRFGEGYFIGCDRHPKCKYIARTLSDEDDENEACEET 728 Query: 151 HYPLLIE 157 + Sbjct: 729 KWNFEPR 735 >UniRef50_A5INJ9 Adenine-specific DNA methylase containing a Zn-ribbon-like protein n=2 Tax=Thermotogaceae RepID=A5INJ9_THEP1 Length = 916 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 14/111 (12%) Query: 78 FGMFI----GCINYPECEHTELIDKPDETAITCPQCRTGHLVQR-----RSRYGKTFHSC 128 +G + I + + + + + C C T + R ++R GK +H Sbjct: 199 YGQYWFEDGSKIGFKKNIFADTMYYFWIKEVPCLACGTKIPLFRGYMLAKTRDGKGYHVI 258 Query: 129 DRYPECQ--FAINFKPIAGECPECHYPLLIEKKTA-QGVKHFCASKQCGKP 176 PEC+ F +N ECP C +K +G + C + CG+ Sbjct: 259 C--PECENIFVVNNYEKDTECPRCGKKFNPDKDGNVEGKYYICTNPNCGQK 307 Score = 45.2 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 48/182 (26%), Gaps = 52/182 (28%) Query: 14 SCPKCGAELVIRSGK----------------------HGPFLGCSQYPACDYVRPLKSSA 51 CP C E + + +G + + + + + Sbjct: 162 ICPHCLEEYAKINSREPEDVLKEVVEKLKVANDPKEVYGQYWF-EDGSKIGFKKNIFADT 220 Query: 52 DGHIVKVLEGQVCPACGANLVLRQG--------RFGMFIGCINYPECEHTELIDKPDETA 103 + ++ C ACG + L +G G + C PECE+ + E Sbjct: 221 MYYFW--IKEVPCLACGTKIPLFRGYMLAKTRDGKGYHVIC---PECENIF-VVNNYEKD 274 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQF----AINFKPIAGE----------CPE 149 CP+C + ++ C P C K CP Sbjct: 275 TECPRCGKKFNPDKDGNVEGKYYICTN-PNCGQKSVIVEAIKKTGKPEERLYAVEYYCPH 333 Query: 150 CH 151 C Sbjct: 334 CG 335 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 21/36 (58%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 + CP+CG L R+G+ G F GC+ +P C Y + Sbjct: 190 EEKICPRCGLALKKRNGRFGGFWGCTGFPDCRYTKN 225 Score = 50.6 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 40 ACDYVRP----LKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTEL 95 C + + + G K E ++CP CG L R GRFG F GC +P+C +T+ Sbjct: 166 DCRMNQQVFELMAKESGGTSAKQTEEKICPRCGLALKKRNGRFGGFWGCTGFPDCRYTKN 225 Score = 49.1 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Query: 99 PDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAIN 139 CP+C L +R R+G F C +P+C++ N Sbjct: 187 KQTEEKICPRCGLA-LKKRNGRFGG-FWGCTGFPDCRYTKN 225 >UniRef50_Q3IU69 Homolog to DNA topoisomerase I n=2 Tax=Halobacteriaceae RepID=Q3IU69_NATPD Length = 240 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 55/155 (35%), Gaps = 21/155 (13%) Query: 17 KCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQG 76 +CG +LV + G + C C L S A CG V Sbjct: 100 RCGGDLV----RSGGGVSCL---DCGERFGLPSGATTTGDDCS-------CGLPTVRVD- 144 Query: 77 RFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQ- 135 R F C++ E + E CP+C + + RR G C++YP+C+ Sbjct: 145 RGEPFELCLDPDCGSLLEAVRAAFEGEWACPECGSDLDIIRR---GGLLAGCEQYPDCET 201 Query: 136 -FAINFKPIAGECPECHYPLLIEKKTAQGVKHFCA 169 F+I + G C C P+ + + C+ Sbjct: 202 AFSIPDGVVDGRC-GCGLPVFETATGRRCLDTDCS 235 >UniRef50_C9LWM4 DNA topoisomerase n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LWM4_9FIRM Length = 714 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 21/97 (21%) Query: 98 KPDETAITCPQCRTGHLVQRRSRYGK-TFHSCDR-------------YPECQFAINFKPI 143 D+ CP CR G L+++ S+ K FH C YP+ + +P+ Sbjct: 613 PKDKKRTPCPICREGILLRKYSQKSKMYFHMCSNEKCVSPDTGRKMFYPD----DSGEPV 668 Query: 144 AGECPECHYPLLIEKKTAQGVKHFCASKQCGKPVSAE 180 CPEC +L + G C C K + Sbjct: 669 VAFCPEC-ETVLAKLNGKNGAFWLC--NHCKKTFDDK 702 Score = 52.9 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 7/103 (6%) Query: 6 LFTVRNNESCPKC-GAELVIRSGKHGPFLG--CSQYPACDYVRPLKSSADGHIVKVLEGQ 62 L + CP C L+ + + CS C + Sbjct: 612 LPKDKKRTPCPICREGILLRKYSQKSKMYFHMCSN-EKCVSPDTGRKMFYPDDSGEPVVA 670 Query: 63 VCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAIT 105 CP C L G+ G F C C+ T Sbjct: 671 FCPECETVLAKLNGKNGAFWLC---NHCKKTFDDKNGHPVLKK 710 Score = 47.5 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 22/125 (17%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQ---GRFGMFIGCINYPEC------EHTE 94 + K + CP C ++LR+ F C N + Sbjct: 601 NIQFAEKHLFPLPKDKKRTPCPICREGILLRKYSQKSKMYFHMCSNEKCVSPDTGRKMFY 660 Query: 95 LIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPL 154 D + CP+C T ++ + + F C+ C+ + K +P+ Sbjct: 661 PDDSGEPVVAFCPECET--VLAKLNGKNGAFWLCNH---CKKTFDDKN--------GHPV 707 Query: 155 LIEKK 159 L + K Sbjct: 708 LKKDK 712 Score = 39.1 bits (89), Expect = 0.074, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%) Query: 136 FAINFKPIAGECPECHYPLLIEKKTAQGV--KHFCASKQC 173 F + CP C +L+ K + + H C++++C Sbjct: 610 FPLPKDKKRTPCPICREGILLRKYSQKSKMYFHMCSNEKC 649 >UniRef50_A3EW25 DNA topoisomerase n=3 Tax=Leptospirillum RepID=A3EW25_9BACT Length = 684 Score = 58.3 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 30/67 (44%) Query: 58 VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQCRTGHLVQR 117 +EG++C CG L +G+FG F+GC YP C H E + T P R Sbjct: 612 PVEGKICSECGGVLRRLEGKFGPFLGCSGYPACRHLEKLPGAVSTNKRSPSRGKNTKGTR 671 Query: 118 RSRYGKT 124 GK+ Sbjct: 672 NGNSGKS 678 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 29/67 (43%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVCPACGAN 70 + C +CG L GK GPFLGCS YPAC ++ L + + G+ Sbjct: 614 EGKICSECGGVLRRLEGKFGPFLGCSGYPACRHLEKLPGAVSTNKRSPSRGKNTKGTRNG 673 Query: 71 LVLRQGR 77 + GR Sbjct: 674 NSGKSGR 680 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%) Query: 102 TAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFK 141 C +C G L + ++G F C YP C+ Sbjct: 614 EGKICSECG-GVLRRLEGKFG-PFLGCSGYPACRHLEKLP 651 >UniRef50_Q1NX61 DNA topoisomerase I:Restriction endonuclease n=2 Tax=Bacteria RepID=Q1NX61_9DELT Length = 273 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Query: 93 TELIDKPDETAITCPQCRTGHLV---QRRSRYGKTFHSCDRYPECQFAINFK 141 T + + CP+C ++ +R SR G F C YP C++ ++ Sbjct: 221 TANTEGSQQATGRCPECSKNLVLREAKRGSRIGSRFWGCSGYPRCRYTQEYR 272 Score = 57.5 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%) Query: 8 TVRNNESCPKCGAELVIRSGKHG-----PFLGCSQYPACDYVRPLKS 49 + + CP+C LV+R K G F GCS YP C Y + + Sbjct: 227 SQQATGRCPECSKNLVLREAKRGSRIGSRFWGCSGYPRCRYTQEYRE 273 Score = 47.1 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFG-----MFIGCINYPECEHTELI 96 V+ + + CP C NLVLR+ + G F GC YP C +T+ Sbjct: 212 RNVQGPQVATANTEGSQQATGRCPECSKNLVLREAKRGSRIGSRFWGCSGYPRCRYTQEY 271 Query: 97 DK 98 + Sbjct: 272 RE 273 >UniRef50_D0GKB0 DNA topoisomerase n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GKB0_9FUSO Length = 851 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 3 KSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVR 45 + C KCG I+ G+ G FL C+ YP C ++ Sbjct: 711 NEDKKIIEEAGVCEKCGRPFEIKMGRFGKFLACTGYPECKNIK 753 Score = 54.8 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 26/100 (26%) Query: 20 AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVK---------------------- 57 +++ G+ G +L Y + L K Sbjct: 653 KRYMLKKGRFGEYLESEDYENDEKRMSLPLPIKQKYKKGTLNEVNGVLQINEEITAIINE 712 Query: 58 ----VLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHT 93 + E VC CG ++ GRFG F+ C YPEC++ Sbjct: 713 DKKIIEEAGVCEKCGRPFEIKMGRFGKFLACTGYPECKNI 752 >UniRef50_A6BK25 DNA topoisomerase n=12 Tax=Firmicutes RepID=A6BK25_9FIRM Length = 765 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 11/86 (12%) Query: 5 ALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGHIVKVLEGQVC 64 N CP CG ++ GK+ L C C Y + C Sbjct: 639 FRHDNLTNTKCPHCGKRMLSVKGKNSRMLVCQDR-ECGYRE---------TIARTSNARC 688 Query: 65 PACGANL-VLRQGRFGMFIGCINYPE 89 P C + ++++G F+ Y E Sbjct: 689 PNCHKKMELIKKGDSETFVCSCGYKE 714 Score = 48.7 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 4/90 (4%) Query: 44 VRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETA 103 ++ +K+S L CP CG ++ +G+ + C + + Sbjct: 629 IQDIKTSDGTFRHDNLTNTKCPHCGKRMLSVKGKNSRMLVCQDRECGYRE---TIARTSN 685 Query: 104 ITCPQCRTGHLVQRRSRYGKTFHSCDRYPE 133 CP C + ++ +TF Y E Sbjct: 686 ARCPNCHKKMELIKKG-DSETFVCSCGYKE 714 Score = 47.1 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 8/86 (9%) Query: 96 IDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINF-KPIAGECPECHYPL 154 + T CP C L + C EC + + CP CH + Sbjct: 639 FRHDNLTNTKCPHCGKRMLSVK--GKNSRMLVCQDR-ECGYRETIARTSNARCPNCHKKM 695 Query: 155 LIEKKTAQGVKHFCASKQCGKPVSAE 180 + KK C+ CG E Sbjct: 696 ELIKKGDSETF-VCS---CGYKEKLE 717 >UniRef50_Q4A5N2 DNA topoisomerase n=2 Tax=Mycoplasma RepID=Q4A5N2_MYCS5 Length = 625 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 1 MAKSALFTVRNNESCPKCGAELVIRSGK-HGPFLGCSQYPACDYVRPLKSSA 51 M K+ L +E CP C +L+IR + F+GC +P C Y R + Sbjct: 558 MEKTRLEDNFLDEDCPDCSGKLLIRLNRKKQKFIGCKSFPNCTYTRSYEDPD 609 Score = 48.7 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGE 146 + + + CP C +G L+ R +R + F C +P C + +++ + Sbjct: 557 TMEKTRLEDNFLDEDCPDC-SGKLLIRLNRKKQKFIGCKSFPNCTYTRSYEDPDAK 611 >UniRef50_A5FHK0 DNA topoisomerase III n=25 Tax=cellular organisms RepID=A5FHK0_FLAJ1 Length = 768 Score = 57.9 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 24/148 (16%) Query: 13 ESCPKCGAELVIRSGKHGPFLGCSQYPA-CDYVRPLKSSADGHIVKVLEGQVCPACGANL 71 E+CPKC I+ F GCS+Y + CD+V P V G+ + Sbjct: 612 ETCPKCQKGNFIK--GKSAF-GCSEYKSGCDFVLPYGFHDKKITESQYLRLV--QKGSTV 666 Query: 72 VLRQGR--FGMFIGCINYPECEH----------TELIDKPDETAITCPQCRTGHLVQRRS 119 ++ + G G I + E + + +++CP+C+ G+++ Sbjct: 667 NIKGFKTDAGTVEGLIRFEENYKLKLEPKKTYIKKTTKETASDSLSCPKCKKGNIL---- 722 Query: 120 RYGKTFHSCDRYPE-CQFAINFKPIAGE 146 GKT + C Y C F + F + + Sbjct: 723 -KGKTAYGCSEYKSGCDFKVTFDEVRAK 749 >UniRef50_A1TJM5 DNA topoisomerase n=55 Tax=Proteobacteria RepID=A1TJM5_ACIAC Length = 680 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 19/43 (44%) Query: 2 AKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV 44 + V CP CGA R+GK G F CS+YP C Sbjct: 614 EATLAIRVPAGPPCPLCGAATRKRTGKTGAFWSCSRYPDCKGT 656 Score = 50.2 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 91 EHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 + CP C ++R+ F SC RYP+C+ + Sbjct: 612 HREATLAIRVPAGPPCPLCGAAT--RKRTGKTGAFWSCSRYPDCKGTV 657 Score = 49.8 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 25/52 (48%) Query: 57 KVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDETAITCPQ 108 +V G CP CGA R G+ G F C YP+C+ T ID + P+ Sbjct: 620 RVPAGPPCPLCGAATRKRTGKTGAFWSCSRYPDCKGTVAIDSAEAGRRNGPR 671 >UniRef50_A4JFS2 DNA topoisomerase III n=4 Tax=Proteobacteria RepID=A4JFS2_BURVG Length = 760 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Query: 89 ECEHTELIDKPDETAITCPQCRTGHLVQRRSR----YGKTFHSCDRYPECQFAINFKPIA 144 E H P CP+C+TG +V R++R GK F C YP C+ A Sbjct: 698 EIGHESSKTAPSAAVKACPECKTGKMVVRQARSGPSAGKPFLGCTNYPRCKHAERMPEKE 757 Score = 51.8 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 2 AKSALFTVRNNESCPKCG-AELVIRSGKHGP-----FLGCSQYPACDYVRPLKSSAD 52 S ++CP+C ++V+R + GP FLGC+ YP C + + Sbjct: 702 ESSKTAPSAAVKACPECKTGKMVVRQARSGPSAGKPFLGCTNYPRCKHAERMPEKEP 758 >UniRef50_A1VWJ4 UvrD/REP helicase n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VWJ4_POLNA Length = 914 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 8 TVRNNESCPKCG-AELVIRSGKHGPFLGCSQYPACDYVRPLKSSADGH 54 T +NE C CG +V ++GK+G FLGCS YP C + R ++ + + Sbjct: 862 TESSNELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIEQNEVRN 909 Score = 54.5 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 106 CPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIA 144 C C G +V + +YG F C YP C+ N + Sbjct: 869 CSVCGDGFVVPKNGKYG-AFLGCSNYPRCRHTRNIEQNE 906 Score = 49.1 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 48 KSSADGHIVKVLEGQVCPACGANLVL-RQGRFGMFIGCINYPECEHTELIDKPDETAI 104 + + ++C CG V+ + G++G F+GC NYP C HT I++ + Sbjct: 853 QITVRMADGTESSNELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIEQNEVRNH 910 Score = 42.5 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%) Query: 141 KPIAGECPECHYPLLIEKKTAQGVKHFCAS-KQCGKPVSAE 180 + C C ++ K G C++ +C + E Sbjct: 863 ESSNELCSVCGDGFVVPKNGKYGAFLGCSNYPRCRHTRNIE 903 >UniRef50_Q8L288 DNA restriction n=1 Tax=Proteus vulgaris RepID=Q8L288_PROVU Length = 357 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 11 NNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRP 46 ++ SC CG +++R+G F GCS +P C R Sbjct: 321 DSNSCSICGGTMLLRTGNKKTFWGCSNFPECRNTRE 356 Score = 51.0 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 85 INYPECEHTELIDKPDETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAI 138 N+ + + + +C C L++ ++ KTF C +PEC+ Sbjct: 304 SNFEKQTSDGISSAVPLDSNSCSICGGTMLLRTGNK--KTFWGCSNFPECRNTR 355 Score = 49.1 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%) Query: 42 DYVRPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTE 94 D ++S L+ C CG ++LR G F GC N+PEC +T Sbjct: 303 DSNFEKQTSDGISSAVPLDSNSCSICGGTMLLRTGNKKTFWGCSNFPECRNTR 355 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.120 0.468 Lambda K H 0.267 0.0371 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,073,169,235 Number of Sequences: 3077464 Number of extensions: 39462074 Number of successful extensions: 220166 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 653 Number of HSP's successfully gapped in prelim test: 812 Number of HSP's that attempted gapping in prelim test: 209908 Number of HSP's gapped (non-prelim): 5997 length of query: 180 length of database: 1,040,396,356 effective HSP length: 120 effective length of query: 60 effective length of database: 671,100,676 effective search space: 40266040560 effective search space used: 40266040560 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 88 (38.6 bits)