BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (586 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobac... 1214 0.0 UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax... 744 0.0 UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax... 655 0.0 UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Ta... 630 e-179 UniRef50_B5JP68 Type III restriction enzyme, res subunit family ... 616 e-175 UniRef50_UPI0001911E38 putative helicase n=1 Tax=Salmonella ente... 455 e-126 UniRef50_Q5G7M7 Putative helicase n=1 Tax=Listonella phage phiHS... 309 2e-82 UniRef50_A3JKG0 Putative ATP-dependent helicase n=1 Tax=Marinoba... 271 4e-71 UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax... 263 2e-68 UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vade... 240 1e-61 UniRef50_A0LBR5 Type III restriction enzyme, res subunit n=3 Tax... 228 4e-58 UniRef50_B1M5E1 Helicase domain protein n=8 Tax=Alphaproteobacte... 216 3e-54 UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax... 191 6e-47 UniRef50_A5A3T1 BcepGomrgp42 n=1 Tax=Burkholderia phage BcepGomr... 187 8e-46 UniRef50_UPI0001911427 putative helicase n=2 Tax=Salmonella ente... 187 1e-45 UniRef50_UPI0001545E85 hypothetical protein ORF029 n=1 Tax=Pseud... 186 1e-45 UniRef50_A9DEN3 NTP dependent helicase n=1 Tax=Yersinia phage PY... 177 7e-43 UniRef50_B4UTX6 p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_B... 174 9e-42 UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococ... 170 1e-40 UniRef50_Q8HAK4 Gp58 n=5 Tax=Caudovirales RepID=Q8HAK4_9CAUD 167 1e-39 UniRef50_D1VXH8 DEAD/DEAH box helicase n=13 Tax=Bacteroidales Re... 162 2e-38 UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida... 161 6e-38 UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida... 157 8e-37 UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida... 151 8e-35 UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3... 150 1e-34 UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax... 148 5e-34 UniRef50_B5ZFR8 Type III restriction protein res subunit n=1 Tax... 147 1e-33 UniRef50_A5PJ16 HelA n=4 Tax=Siphoviridae RepID=A5PJ16_9CAUD 147 1e-33 UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase ir... 147 1e-33 UniRef50_B3JH18 Putative uncharacterized protein n=1 Tax=Bactero... 147 2e-33 UniRef50_A0L703 Type III restriction enzyme, res subunit n=13 Ta... 146 2e-33 UniRef50_B8I140 Type III restriction protein res subunit n=16 Ta... 145 3e-33 UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax... 145 5e-33 UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=... 145 6e-33 UniRef50_C5UXP6 Type III restriction enzyme, res subunit n=1 Tax... 144 9e-33 UniRef50_Q3V5F4 Gp41, helicase n=1 Tax=Corynebacterium phage BFK... 144 1e-32 UniRef50_Q856Y4 Gp50 n=7 Tax=unclassified Siphoviridae RepID=Q85... 144 1e-32 UniRef50_C3R6R4 DEAD/DEAH box helicase n=33 Tax=Bacteroides RepI... 141 7e-32 UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1... 141 8e-32 UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax... 140 9e-32 UniRef50_C6NXH3 Type III restriction protein res subunit n=1 Tax... 140 1e-31 UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax... 139 4e-31 UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 138 6e-31 UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis R... 134 8e-30 UniRef50_Q45PU5 JK_72P n=1 Tax=Enterobacteria phage JK06 RepID=Q... 134 1e-29 UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q... 134 1e-29 UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Loddero... 133 2e-29 UniRef50_Q6J7X8 Pas53 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q... 132 3e-29 UniRef50_B1XQS3 Putative uncharacterized protein n=1 Tax=Synecho... 132 5e-29 UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6... 132 5e-29 UniRef50_B1GS37 Putative ATP-dependent helicase n=1 Tax=Salmonel... 131 7e-29 UniRef50_C0A6N5 DNA/RNA helicase n=1 Tax=Opitutaceae bacterium T... 130 1e-28 UniRef50_B1MAA8 Type III restriction protein res subunit n=1 Tax... 130 2e-28 UniRef50_B5U5V9 Gp54 n=8 Tax=unclassified Siphoviridae RepID=B5U... 129 3e-28 UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malasse... 129 3e-28 UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia ... 129 4e-28 UniRef50_C2FEA8 Helicase n=4 Tax=Bacilli RepID=C2FEA8_LACPA 126 3e-27 UniRef50_C0A3V9 DNA or RNA helicase of superfamily II-like prote... 125 3e-27 UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B... 125 3e-27 UniRef50_Q597S9 Putative helicase n=1 Tax=Lactobacillus phage ph... 124 1e-26 UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talarom... 124 1e-26 UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collins... 124 1e-26 UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepI... 124 1e-26 UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio ... 123 2e-26 UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilag... 123 2e-26 UniRef50_Q47CK6 Helicase, C-terminal:Type III restriction enzyme... 123 2e-26 UniRef50_D1WDT8 51.5 kDa protein n=5 Tax=Lactobacillus RepID=D1W... 123 2e-26 UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii Re... 122 4e-26 UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5... 121 7e-26 UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=P... 121 9e-26 UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax... 120 1e-25 UniRef50_A6FFB6 Putative uncharacterized protein n=1 Tax=Moritel... 120 1e-25 UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax... 120 2e-25 UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicil... 120 2e-25 UniRef50_A6L307 Putative uncharacterized protein n=6 Tax=Bactero... 119 4e-25 UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax... 117 9e-25 UniRef50_A0YZ56 Putative uncharacterized protein n=1 Tax=Lyngbya... 117 1e-24 UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B... 117 2e-24 UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax... 116 2e-24 UniRef50_B2GAW8 Phage helicase n=5 Tax=root RepID=B2GAW8_LACF3 115 4e-24 UniRef50_UPI00016C5789 putative DEAD box family helicase, phage ... 114 9e-24 UniRef50_A0AI00 Complete genome n=11 Tax=root RepID=A0AI00_LISW6 114 9e-24 UniRef50_B7XGM0 Helicase n=3 Tax=Pseudomonas RepID=B7XGM0_PSEPU 114 1e-23 UniRef50_B4WJ71 Type III restriction enzyme, res subunit family ... 114 1e-23 UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49... 114 1e-23 UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Sac... 114 2e-23 UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax... 113 2e-23 UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 R... 113 2e-23 UniRef50_Q9T1H9 Putative DEAH-family helicase n=1 Tax=Lactobacil... 113 2e-23 UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothe... 112 3e-23 UniRef50_Q6VSX2 Putative helicase n=3 Tax=Vibrio phage phi16 Rep... 112 5e-23 UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax... 112 6e-23 UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6... 111 7e-23 UniRef50_Q6NDX2 Helicase C-terminal domain n=1 Tax=Leptospira ph... 111 7e-23 UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax... 111 7e-23 UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformat... 111 8e-23 UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax... 110 1e-22 UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta Rep... 110 2e-22 UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisi... 110 2e-22 UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filob... 109 3e-22 UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax... 109 3e-22 UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax... 109 3e-22 UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordari... 109 3e-22 UniRef50_C3U2J2 Putative helicase n=1 Tax=Lactococcus phage P087... 109 3e-22 UniRef50_B9CV28 Phage deah-family helicase n=1 Tax=Staphylococcu... 109 4e-22 UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax... 108 6e-22 UniRef50_B3RW31 Putative uncharacterized protein n=1 Tax=Trichop... 108 6e-22 UniRef50_B9KN75 ABC-type metal ion transport system ATPase compo... 107 1e-21 UniRef50_A4BVK1 Type III restriction enzyme, res subunit n=1 Tax... 107 1e-21 UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax... 107 1e-21 UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax... 106 3e-21 UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 106 3e-21 UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 105 4e-21 UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=L... 105 6e-21 UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Prop... 105 6e-21 UniRef50_C3JHT4 Helicase conserved domain protein (Fragment) n=5... 105 6e-21 UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax... 105 7e-21 UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA ... 104 7e-21 UniRef50_C3X1S4 Helicase n=2 Tax=Oxalobacter formigenes HOxBLS R... 104 8e-21 UniRef50_C5PPJ8 Helicase n=1 Tax=Sphingobacterium spiritivorum A... 104 8e-21 UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=D... 104 9e-21 UniRef50_C4WDM0 Phage DNA/RNA helicase n=1 Tax=Staphylococcus wa... 104 9e-21 UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasma... 104 1e-20 UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebact... 104 1e-20 UniRef50_P24125 51.5 kDa protein n=5 Tax=root RepID=V51K_BPL79 104 1e-20 UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax... 103 1e-20 UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pe... 102 3e-20 UniRef50_C5R853 DEAH-family helicase n=1 Tax=Weissella paramesen... 102 4e-20 UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax... 102 4e-20 UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax... 102 4e-20 UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=... 102 5e-20 UniRef50_A0QRU1 Type III restriction enzyme, res subunit n=3 Tax... 102 5e-20 UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococ... 102 5e-20 UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM... 102 6e-20 UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like prot... 101 7e-20 UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax... 101 7e-20 UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=... 101 7e-20 UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria Rep... 101 7e-20 UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=... 101 9e-20 UniRef50_A3IZE6 DEAD/DEAH box helicase-like protein n=2 Tax=Cyan... 101 9e-20 UniRef50_D2B497 Putative helicase n=1 Tax=Streptosporangium rose... 100 1e-19 UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax... 100 1e-19 UniRef50_C7PI11 Type III restriction protein res subunit n=1 Tax... 100 1e-19 UniRef50_A0RVA6 Superfamily II helicase n=1 Tax=Cenarchaeum symb... 100 2e-19 UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B... 100 2e-19 UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Ba... 100 3e-19 UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=P... 99 3e-19 UniRef50_A3J9F1 Type III restriction enzyme, res subunit n=1 Tax... 99 3e-19 UniRef50_Q1UZM9 Type III restriction enzyme, res subunit n=1 Tax... 99 4e-19 UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=L... 99 6e-19 UniRef50_C7BL24 Putative helicase n=1 Tax=Photorhabdus asymbioti... 99 6e-19 UniRef50_A3VWG4 DNA/RNA helicase n=1 Tax=Roseovarius sp. 217 Rep... 99 6e-19 UniRef50_A9BYC8 Helicase domain protein n=1 Tax=Delftia acidovor... 98 7e-19 UniRef50_B9BQH5 Putative helicase n=2 Tax=Burkholderia multivora... 98 1e-18 UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=P... 97 1e-18 UniRef50_C6WJC6 Type III restriction protein res subunit n=3 Tax... 97 1e-18 UniRef50_C4Y4K7 Putative uncharacterized protein n=1 Tax=Clavisp... 97 2e-18 UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax... 96 3e-18 UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cel... 96 3e-18 UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax... 96 3e-18 UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax... 96 5e-18 UniRef50_D1S9N6 Helicase domain protein n=1 Tax=Micromonospora a... 96 5e-18 UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Ta... 95 6e-18 UniRef50_A1CDN6 DEAD/DEAH box helicase, putative n=2 Tax=Aspergi... 95 8e-18 UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax... 95 9e-18 UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum '... 94 1e-17 UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1... 94 1e-17 UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobaci... 94 1e-17 UniRef50_A0Q726 Type I restriction-modification system, subunit ... 94 1e-17 UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleo... 94 2e-17 UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM... 94 2e-17 UniRef50_A6LX80 Type III restriction protein, res subunit n=15 T... 94 2e-17 UniRef50_C5A7E8 DNA repair helicase, XPB-rad25-like protein n=9 ... 94 2e-17 UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae AT... 93 2e-17 UniRef50_C8QW89 Type III restriction protein res subunit n=1 Tax... 93 3e-17 UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepI... 93 3e-17 UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bactero... 93 4e-17 UniRef50_C2KJC2 Helicase n=1 Tax=Leuconostoc mesenteroides subsp... 93 4e-17 UniRef50_A0RY27 Superfamily II helicase n=1 Tax=Cenarchaeum symb... 92 4e-17 UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IP... 92 4e-17 UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax... 92 4e-17 UniRef50_B3T0J4 Putative DEAD/DEAH box helicase n=1 Tax=uncultur... 92 7e-17 UniRef50_C6VL05 Helicase-like protein:Type III restriction enzym... 92 7e-17 UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax... 91 9e-17 UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO 91 1e-16 UniRef50_C3WDK9 HKD family nuclease/DNA/RNA helicase (Fragment) ... 91 1e-16 UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum... 91 2e-16 UniRef50_B1BM47 Type III restriction enzyme, res subunit family ... 91 2e-16 UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria Re... 90 2e-16 UniRef50_Q1CPI4 Phage DNA/RNA helicase n=21 Tax=root RepID=Q1CPI... 90 3e-16 UniRef50_C4L054 Type III restriction protein res subunit n=70 Ta... 90 3e-16 UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus aci... 90 3e-16 UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax... 90 3e-16 UniRef50_C1GNS0 GPI inositol-deacylase n=2 Tax=Leotiomyceta RepI... 89 3e-16 UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=... 89 4e-16 UniRef50_C3MF99 Putative restriction endonuclease type I with R ... 89 4e-16 UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma l... 89 5e-16 UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Gro... 89 6e-16 UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax... 88 8e-16 UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae... 88 9e-16 UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax... 88 1e-15 UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14J... 87 1e-15 UniRef50_A0M1L3 Helicase-like protein-possibly a type-III restri... 87 2e-15 UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bac... 87 2e-15 UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtm... 87 2e-15 UniRef50_Q486H0 Putative helicase n=1 Tax=Colwellia psychrerythr... 86 3e-15 UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax... 86 3e-15 UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemol... 86 3e-15 UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=... 86 3e-15 UniRef50_Q4L1F2 Gp65 n=1 Tax=Burkholderia phage BcepB1A RepID=Q4... 86 3e-15 UniRef50_C6BWP3 Type III restriction protein res subunit n=1 Tax... 86 4e-15 UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type ... 86 4e-15 UniRef50_A3DN51 DNA repair helicase RAD25 n=1 Tax=Staphylothermu... 86 4e-15 UniRef50_B1L767 Type III restriction protein res subunit n=1 Tax... 86 4e-15 UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax... 86 5e-15 UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax... 86 5e-15 UniRef50_Q4HNM6 Type I restriction-modification system, R subuni... 86 5e-15 UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Acti... 85 6e-15 UniRef50_B5FA21 Type I restriction-modification system, R subuni... 85 6e-15 UniRef50_D1YJ29 Type III restriction enzyme, res subunit n=1 Tax... 85 8e-15 UniRef50_C8U7L2 Predicted helicase n=17 Tax=root RepID=C8U7L2_ECO10 85 9e-15 UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 T... 85 9e-15 UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11... 85 9e-15 UniRef50_B6G1B2 Putative uncharacterized protein n=1 Tax=Clostri... 85 1e-14 UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobact... 84 1e-14 UniRef50_A8ZTH8 Type III restriction protein res subunit n=1 Tax... 84 1e-14 UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=C... 84 2e-14 UniRef50_Q2S088 Putative helicase n=1 Tax=Salinibacter ruber DSM... 84 2e-14 UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Ta... 84 2e-14 UniRef50_A2BMA0 DNA or RNA helicases of superfamily II n=1 Tax=H... 84 2e-14 UniRef50_B5EM18 Type III restriction protein res subunit n=7 Tax... 83 2e-14 UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 T... 83 3e-14 UniRef50_B6R0S4 Type III restriction enzyme, res subunit family ... 83 3e-14 UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax... 83 3e-14 UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax... 83 3e-14 UniRef50_C4V188 Putative uncharacterized protein n=1 Tax=Selenom... 83 3e-14 UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 ... 83 3e-14 UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID... 83 3e-14 UniRef50_A6FSI5 Helicase n=2 Tax=Roseobacter sp. AzwK-3b RepID=A... 83 4e-14 UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=F... 82 4e-14 UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococ... 82 4e-14 UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=C... 82 5e-14 UniRef50_C4G600 Putative uncharacterized protein n=1 Tax=Abiotro... 82 5e-14 UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=C... 82 6e-14 UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodi... 82 6e-14 UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospi... 82 6e-14 UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=... 82 7e-14 UniRef50_UPI000045D920 COG1061: DNA or RNA helicases of superfam... 82 7e-14 UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax... 81 1e-13 UniRef50_Q8EUU6 Type I restriction-modification system R subunit... 81 1e-13 >UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobacteria RepID=YEJH_ECOLI Length = 586 Score = 1214 bits (3141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/586 (100%), Positives = 586/586 (100%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE Sbjct: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH Sbjct: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD Sbjct: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH Sbjct: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR Sbjct: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP Sbjct: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG Sbjct: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS Sbjct: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA Sbjct: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 Query: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG Sbjct: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 >UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax=Gammaproteobacteria RepID=Q1QZA7_CHRSD Length = 613 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/604 (63%), Positives = 451/604 (74%), Gaps = 27/604 (4%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVA 63 +LRPYQ +AVD + HFRR PAV+VLPTG+GKSLVIAELARLARGRVLVLAHV+ELV Sbjct: 8 SLRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIAELARLARGRVLVLAHVRELVE 67 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-----GEFSLLIVDE 118 QNHAKY+A GLEAD+F+AGL RKES +VVFGSVQSV R+L+ F+ G F+LL++DE Sbjct: 68 QNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVIDE 127 Query: 119 CHRI----------GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 CHRI D S Y Q++ HL + NP L++LGLTATP+RLG+G+IY H+HG Sbjct: 128 CHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRLGQGFIYHRHHHG 187 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV-------VQYDFSRLQAQSNGL 221 MVRGD F+DC++E PLR M+K GYL PP R+D + +YDFSRL G Sbjct: 188 MVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGRGGG 247 Query: 222 FSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT 281 F EA+LNR ++ R TP II++++E A R+GVMIFAATV HA+EI+G LPA+ AALI Sbjct: 248 FEEAELNRVVQGH-RATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQQAALIV 306 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G TPG ER+ LIE+FKAQR +YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG Sbjct: 307 GATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 366 Query: 342 LRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADG 401 LRLAPGK DCLILDYAGNP DLYAPEVG P+ SD PVQV CPACG AN FWGK DG Sbjct: 367 LRLAPGKQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPVQVECPACGHANLFWGKR--DG 424 Query: 402 TL-IEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDD 460 L IEH+GRRCQG ED DG R QCDFRFRFK C QC AENDIAAR C +CD LVDPDD Sbjct: 425 ELVIEHYGRRCQGLLEDTDGRRRQCDFRFRFKVCDQCGAENDIAARACHQCDERLVDPDD 484 Query: 461 MLKAALRLKDALVLRCSGMSLQHGHDEKG-EWLKITYYDEDGADVSERFRLQTPAQRTAF 519 LKAALRLK+A VLR SGM LQ + +G LK+TY+DEDGA + E F L+T AQR AF Sbjct: 485 KLKAALRLKEAKVLRVSGMQLQAVTNGRGLPRLKVTYHDEDGATLDEWFALETAAQRRAF 544 Query: 520 EQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFR 579 F+R H R PG R + ++A + L+ PDFV+ R G++WQ+R+K+FDY GR+R Sbjct: 545 TLAFLRHHLRAPGSDWRPDSPEAVIAGERRLKAPDFVIGRKVGRHWQIRDKLFDYAGRYR 604 Query: 580 LAHE 583 A + Sbjct: 605 KADD 608 >UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax=Gammaproteobacteria RepID=A6VYC7_MARMS Length = 586 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/584 (53%), Positives = 410/584 (70%), Gaps = 5/584 (0%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 F LR YQ +AV+A+L+HFR PAVIVLPTGAGKSLVIAEL+RLA+GRV+ LAHVKELV Sbjct: 5 FQLRDYQIQAVEASLDHFRSSNDPAVIVLPTGAGKSLVIAELSRLAKGRVVCLAHVKELV 64 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QNHAK+ A G A IF+AGL +K S K F S+QS++ +L F SL+I+DECHR+ Sbjct: 65 EQNHAKFLATGSSAGIFSAGLSQKTSTEKTTFASIQSLSASLVDFNEPVSLIIIDECHRV 124 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G +E QY + + H +NP +++LGLTATP+RLG GWIYQ HYHG R +LF+ CI Sbjct: 125 GMEESGQYNKTIEHFRALNPKVKILGLTATPYRLGSGWIYQNHYHGYTRTCTNSLFKKCI 184 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD--LNRELKKQQRITPH 240 +ELPL++M+K GYLTPP D + YDFS L +G + D LN + K R+T Sbjct: 185 FELPLQHMVKKGYLTPPIHYDAAIAHYDFSLLTESLDGEQNTDDIALNELIHKHPRVTKA 244 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 + QI++ + R+GVMIFAAT++HAKEI LPA+ ALITG T +RD LI FKA+ Sbjct: 245 VTEQILQLSQDRQGVMIFAATIDHAKEIASYLPADKTALITGKTKLKQRDSLIAAFKAKE 304 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 +YLVNV+VLTTGFDAPHVD+IAILRPT+S+SL+QQIVGRGLRL+PGK DCL+LDY N Sbjct: 305 IKYLVNVSVLTTGFDAPHVDVIAILRPTQSISLFQQIVGRGLRLSPGKKDCLVLDYTNNG 364 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 ++++ PE+G + D+V VQ+ CP+C FANTFWG+ A+G ++EHFGRRC G E++ G Sbjct: 365 YNIFQPEIGEKRPTQDSVAVQIHCPSCDFANTFWGRKDAEGNILEHFGRRCHGLLENEQG 424 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 +QC +RFRFK CP CN ENDIAAR+C+ C L+DPDD+L++AL LK+ VLRCSG++ Sbjct: 425 EEQQCSYRFRFKRCPYCNEENDIAARQCQHCAEKLIDPDDLLRSALNLKNNKVLRCSGIT 484 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 + EK +KI Y+DEDG +SE FR R F LF R +++ Sbjct: 485 PELNIKEKS--IKIIYHDEDGLTLSETFRFNFKKSRQTFNDLFAR-RIANGSQSIQFDKI 541 Query: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHEL 584 +I L PDFV+A+ + Q+WQV E++FDY+G +R A+EL Sbjct: 542 EEIERFLPYLPTPDFVIAKKQKQHWQVTERLFDYQGPYRKANEL 585 >UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Tax=Shewanella RepID=Q12MF5_SHEDO Length = 616 Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust. Identities = 307/585 (52%), Positives = 400/585 (68%), Gaps = 12/585 (2%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQQ+AVDAT+NHF+R K AV+VLPTGAGKS+VIAELAR+A+G VLVL HVKELV Q Sbjct: 37 LRNYQQDAVDATINHFKRSKDSAVLVLPTGAGKSIVIAELARIAKGNVLVLTHVKELVEQ 96 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGD 124 N K L A I++AGLK+K++ GK V S+QS AR ++ F FSL+I+DECHR+ Sbjct: 97 NAQKVGLLTESASIYSAGLKQKKAQGKTVVASIQSAARAVERFSQGFSLVIIDECHRVST 156 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 ++ SQYQQ+L+ L K NP L+LLGLTATP+RLG G++Y+ HYHG V + +F +CI++ Sbjct: 157 EKTSQYQQLLSQLIKQNPKLKLLGLTATPYRLGSGYVYRHHYHGKVGNTDNPVFENCIFD 216 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 LP+R +IK GYLT P+ D QYDF+ L G + +A+++ LK Q R T II Q Sbjct: 217 LPMRPLIKQGYLTEPKIFDGLSAQYDFNALSPSDTGEYPQAEVDALLKHQGRATKAIIKQ 276 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYL 304 + + A R+GV+IFAATV HA+EI+ L + AALIT TP ERD +I FK + RY+ Sbjct: 277 VKQVAELRRGVLIFAATVRHAQEIMTYLD-DSAALITATTPHLERDDIISRFKTESLRYI 335 Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 VNVAVLTTGFDAPHVDLIAILRPT S+SL+QQ++GRGLRLAP KTDCL++DYA N +DLY Sbjct: 336 VNVAVLTTGFDAPHVDLIAILRPTASISLFQQMIGRGLRLAPNKTDCLVIDYAANGYDLY 395 Query: 365 APEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDD------ 418 PEVG K S VPVQV CP C FANTFWG DG L+EH+GRRCQG + + Sbjct: 396 YPEVGQAKPNSRAVPVQVHCPVCSFANTFWGLVDNDGDLVEHYGRRCQGLVDSELQSSTV 455 Query: 419 DGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSG 478 + QCDFRFR K CP C ++NDIAAR C +CD+ L+DPD LK L + + +C Sbjct: 456 NIKEVQCDFRFRSKACPDCGSDNDIAARICLQCDSTLIDPDKRLKQVLNAQHHHLFKCQE 515 Query: 479 MSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIP-LRW 537 M L + G L + Y D +G D ++F TP QR AF +F HTRTPG+ ++ Sbjct: 516 MLL----TQDGNKLVVQYLDVEGNDFKQQFYFDTPGQRRAFFAVFAMSHTRTPGMAHPKY 571 Query: 538 ITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAH 582 D+L R PD ++ + ++WQ++E FDY+GR++L++ Sbjct: 572 HKVEDVLKDLKRFRKPDMLLLKKNKKFWQLQEAFFDYQGRYQLSY 616 >UniRef50_B5JP68 Type III restriction enzyme, res subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP68_9BACT Length = 578 Score = 616 bits (1589), Expect = e-175, Method: Compositional matrix adjust. Identities = 300/578 (51%), Positives = 400/578 (69%), Gaps = 5/578 (0%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 ++ LR YQQEAVD+TLNHFRR +TPAVIVLPTGAGKSLVIAELA++A+GRVLVLAHVKEL Sbjct: 1 MYKLRTYQQEAVDSTLNHFRRKRTPAVIVLPTGAGKSLVIAELAKIAKGRVLVLAHVKEL 60 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 V QNH KY++ GL+A I++AGL +K KV+FGS+QSVA D F +F+LL++DECHR Sbjct: 61 VEQNHLKYESYGLQAGIYSAGLNQKNGERKVIFGSIQSVANASDDFFEDFTLLVIDECHR 120 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G + +SQY +++ L N + +LGLTATP+RLG GWIY + G ++ E F+ C Sbjct: 121 VGLEPDSQYAKVIKRLKLNNSRICILGLTATPYRLGLGWIYNYAIRGELKTQELRFFKQC 180 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 IY+LPL YMIK+ YLTPP ++D+PV YDFS L + ++ L L +Q+R+TP I Sbjct: 181 IYDLPLEYMIKNKYLTPPVKVDIPVTSYDFSEL-TEGGSAYTMTQLEEVLHQQRRLTPLI 239 Query: 242 ISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQ 299 I I++ + R+GVMIF++TV+HA+EI+ LP A LI G+T +ERD +I +FK + Sbjct: 240 IKNIVDITDSYQRQGVMIFSSTVKHAQEIMKTLPQGQARLILGETEDSERDQIINDFKNK 299 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 F+YLVNV+VLTTGFDA HVD+IAILRPTES+SLYQQI+GRGLRL GK DCL+LDY G Sbjct: 300 AFKYLVNVSVLTTGFDAAHVDVIAILRPTESISLYQQIIGRGLRLDTGKKDCLVLDYTGM 359 Query: 360 PHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDD 419 H +++PE+G K S++V VQV CP CGF N FWG DG +IEHFGR+C+G ++ D Sbjct: 360 GHSIFSPEIGEKKTVSESVAVQVPCPECGFINDFWGILDDDGHIIEHFGRKCRGGNQNPD 419 Query: 420 GHR-EQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSG 478 + C +RFRFK C QC+AENDI AR CR+C VL+DPD LK A KDA VL Sbjct: 420 TYEFTPCGYRFRFKVCEQCSAENDITARECRKCGNVLIDPDTKLKQAKLSKDAHVLTPDS 479 Query: 479 MSLQHGHDEKGE-WLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRW 537 + + D+ G +L++ YYD D ++E L F F+R H + P + L Sbjct: 480 IEMLERFDKNGNPYLQVKYYDYDARFLAEIHYLNNQTSIKKFNINFLRSHLKRPEMKLNI 539 Query: 538 ITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYE 575 + +I+ Q LR P FV+ R + ++W++ EK+F E Sbjct: 540 SSVGEIIQMQPQLRMPSFVIGRKQEKFWKITEKIFSEE 577 >UniRef50_UPI0001911E38 putative helicase n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. J185 RepID=UPI0001911E38 Length = 293 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/233 (94%), Positives = 229/233 (98%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 MIFTLRPYQQEAVDATL+HFRRH+TPAVIVLPTGAGKSLVIAELAR+ARGRVLVLAHVKE Sbjct: 1 MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKE 60 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LVAQNHAKY ALGLEADIFAAGLKRKES GKVVFGSVQSVARNLDAFQ EFSLLIVDECH Sbjct: 61 LVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVARNLDAFQEEFSLLIVDECH 120 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 RIGDDE+SQYQQILTHL+KVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG++ ALFRD Sbjct: 121 RIGDDEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGNDNALFRD 180 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL+K Sbjct: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELEK 233 >UniRef50_Q5G7M7 Putative helicase n=1 Tax=Listonella phage phiHSIC RepID=Q5G7M7_9CAUD Length = 953 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 187/521 (35%), Positives = 272/521 (52%), Gaps = 56/521 (10%) Query: 35 AGKSLVIAELAR----LARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG 90 GKS++IAE+A+ ++ + LV+ KE+ QN KY++ G A ++A + +KE Sbjct: 374 CGKSVIIAEIAKFFNEVSGKKTLVIGPNKEICQQNAEKYKSYGFPASFWSASIGKKEMRH 433 Query: 91 KVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT 150 +VVFGS S+ LD F +F +I+DE H + ++I +H+ + N LR++GLT Sbjct: 434 QVVFGSPVSIKNELDKFGPQFGAVIIDEAHLL----SPTVKEICSHMKEQNNLLRIVGLT 489 Query: 151 ATPFRLGKGWIYQFHYHGMVRGDE---KALFRDCIYELPLRYMIKHGYLTPPERLDMPVV 207 ATP+RLG G+IY++ + GDE F+ +Y + + +I G+LTPP Sbjct: 490 ATPYRLGSGYIYEYDDNNNPVGDECTKNPFFKRLVYRITAKELIDQGFLTPPIADHEMAS 549 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 +YD S +Q F D+ + + Q R+T II+ ++ + MIFAAT++HA+E Sbjct: 550 KYDTSGVQLNKRNQFDAKDIEQAFEGQGRLTAQIIADVVSHCQNKMCCMIFAATIQHAQE 609 Query: 268 IVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRP 327 I+ LP ++ +TG T +R+ IE K +YLV+V LTTG D +VD+IAILR Sbjct: 610 IMESLPKHNSYCVTGKTKRKDREKAIERAKTGEIKYLVSVGTLTTGVDITNVDVIAILRA 669 Query: 328 TESVSLYQQIVGRGLRLAPGKTDCLILDYAGN------PHDLYAPEVGTPKGKSDNVPVQ 381 TES SL QQI+GRGLRL KT CL+LDYA N DL+ P++ G + V Sbjct: 670 TESASLLQQIIGRGLRLHENKTTCLVLDYAENIERHGLEDDLFNPDIRVSGGGDGSAKVN 729 Query: 382 VFCPACGFANTFWGKTTAD--------------GTLIE--------HFGRRCQGWFEDDD 419 C +CG N F + D G IE H+GRRC G + + Sbjct: 730 ALCKSCGTVNEFTLRKGCDLDHIDEYGYALDLAGERIEMEGQPMPAHYGRRCYGG-DVIN 788 Query: 420 GHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKA----------ALRLK 469 GH +C R+ K CP+C ENDIAAR C C T LVDP++ LKA A+ Sbjct: 789 GHYVRCSERWSMKVCPECEVENDIAARYCTSCRTELVDPNEKLKADYKRMKRDPRAISTD 848 Query: 470 DALVLRCSGMSLQHGH-----DEKGEWLKIT-YYDEDGADV 504 L C Q G+ D + E+ T +Y D ++V Sbjct: 849 KMLGWECKPWITQRGNNTLRVDYRSEYRSFTIWYSPDSSNV 889 >UniRef50_A3JKG0 Putative ATP-dependent helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JKG0_9ALTE Length = 868 Score = 271 bits (694), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 190/514 (36%), Positives = 267/514 (51%), Gaps = 61/514 (11%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR----------GRVL 53 LR YQ EAV A R+ P +I LPTG+GKS VIA LA + + +V+ Sbjct: 49 NLRDYQLEAVLAAAFRIRKTVEPILITLPTGSGKSWVIAALASVVKEMSDARSTKVKKVM 108 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG---E 110 VLAH KELVAQNH K A G +A I++AGL +++ G VVFGS QS+ + F E Sbjct: 109 VLAHSKELVAQNHQKMGAAGYKATIYSAGLSTRDASGDVVFGSRQSIINAVGEFAQLDYE 168 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY---QFHYH 167 FS + VDE H + +Q ++I+ L VNP+LR++GLTATP+ LGKG+I+ F Sbjct: 169 FSAVFVDEAHSM----PTQTREIIEALRSVNPNLRVIGLTATPYALGKGYIFAQDTFRDL 224 Query: 168 GMVRG--DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA 225 +R ++ F + +Y+ + + L PP L Y+ L+ G FSEA Sbjct: 225 EPMRDIYAKEPYFAERVYDKCIEELFADEQLCPP-ILGTISDHYNTEALERTVGGSFSEA 283 Query: 226 DLNRE-LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDT 284 N + Q +T I++ ++ + R GVM FA EHA++I+ LP + AAL+ T Sbjct: 284 SNNAVFVTGQADLTKRIVADVVMQSKKRHGVMFFAQNREHARQILSFLPGDRAALVDSGT 343 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 +R IE+FK+ + +YLV VA L GFDAP+V +IA+L+ TES + +QQI+GRGLRL Sbjct: 344 KAKDRAQFIEDFKSTKLKYLVTVAALAIGFDAPNVSVIAVLKHTESPAFFQQIIGRGLRL 403 Query: 345 AP--GKTDCLILDYAGNPH---DLYAP--EVGTPKGKSDN--VP-VQVFCPACGFANTF- 393 P GK DCL+LDY N +L++P +V PK D +P V+V CP C NTF Sbjct: 404 CPEIGKRDCLVLDYGQNVSADANLFSPAIQVRMPKPGLDGPIIPVVEVICPDCDHVNTFR 463 Query: 394 ---WGK-------------------TTADGT-LIEHFGRRCQGWFEDDDGHRE--QCDFR 428 W + T +D + H G +C G D G + +CD+ Sbjct: 464 KAAWPQDMEMTDTGFLYHRDTRAIFTDSDNKPMAGHMGAQC-GNLLDVPGKKMPVRCDYT 522 Query: 429 FRFKNCPQCNAENDIAARRCRECDTVLVDPDDML 462 + C C N C C+ L ML Sbjct: 523 WGAILCTACKRRNSHRTDFCVACEEPLSKRAKML 556 >UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ48_9GAMM Length = 678 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 174/513 (33%), Positives = 268/513 (52%), Gaps = 76/513 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR----------GRVLV 54 RPYQ+EAVD + P +IV+PTGAGKS VIA ++ + R +VLV Sbjct: 18 FRPYQREAVDCYTRWVVSTREPLLIVMPTGAGKSWVIAGISAVLRQLAYEKTGLRKKVLV 77 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFSL 113 LA ELV QNHAK +A G +A IF AG K +++ + ++V N++ + EF+ Sbjct: 78 LAPSAELVGQNHAKMEASGFKASIFCAGAGDKSHSEDIIYATPETVRVNIEELMEYEFAG 137 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV--R 171 +++DE HR + Q + + + NP++R+ GLTATP+RL +G+IY+ H + Sbjct: 138 VLIDEAHRTSN----QIIEAIDTIRSRNPNVRVAGLTATPYRLTEGYIYRQDKHLDLPPM 193 Query: 172 GDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL---------QAQSN 219 D+ L F IYE+ Y+I+ GY+ PP D+ QYD ++L S+ Sbjct: 194 SDDLTLDPYFSYMIYEVSAHYLIEQGYILPPIFGDV-TAQYDTTKLVRNRTANWTNESSD 252 Query: 220 GLF---SEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED 276 +F + DL +E+ K+ + + R ++F ++HA+ ++ LLP Sbjct: 253 EVFVHGNARDLAQEIVKEVK---------QKIRGGRHSAILFCQNIKHAEMVLSLLPPSQ 303 Query: 277 AALITGDTPGAERDVLIENF-KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 + +I+ TP R +I +F + + F+YLVNV+ LTTGFD VD+IAILR T S SL+Q Sbjct: 304 SGMISHKTPRRVRRQIIADFHRKKAFKYLVNVSTLTTGFDVAAVDVIAILRATHSASLFQ 363 Query: 336 QIVGRGLRLAP--GKTDCLILDYAGN-----PH-DLYAPEV--GTPKGKSDNVPVQVFCP 385 QI+GRGLRL+P GK DCL+LDYA N P D ++PE+ P + ++ ++V CP Sbjct: 364 QILGRGLRLSPETGKEDCLVLDYANNLGRFCPRGDPFSPEIRAALPSDREGSMRIEVDCP 423 Query: 386 ACGFANTF--------------WGKTTADGT---------LIEHFGRRCQGWFEDDDGHR 422 AC N F + ++ +G L H G +C + E + Sbjct: 424 ACAGTNWFQAVDLPGTEIDAQGYLRSIENGMPVLTALGERLAGHIGVQCTNFVEGPNQRL 483 Query: 423 EQCDFRFRFKNCPQCNAENDIAARRCRECDTVL 455 +C+ R+ CP C N + C +C+T+L Sbjct: 484 VRCEHRWSSVECPACGTLNTTYDQWCVKCETIL 516 >UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I0_9BACT Length = 550 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/396 (37%), Positives = 223/396 (56%), Gaps = 31/396 (7%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----RGRVLVLAHVKE 60 LR YQQ+AVDA + RR+ +V+PT GK+ ++A + + A GRV++L+HVKE Sbjct: 3 LRQYQQQAVDAVYKYLRRYDDNPCVVIPTAGGKTPILATIVKDAIQQWDGRVMILSHVKE 62 Query: 61 LVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 L+ Q K + E DI ++ GLKR ++ K + +QS RN D F G F L+IVDE Sbjct: 63 LLEQAVDKIHTVYPECDIGIYSTGLKRWDTDNKCIVAGIQSAYRNTDGF-GNFDLIIVDE 121 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H I + + Y+ L + NP LR++GLTATP+RL G I + L Sbjct: 122 AHLIPEKGDGMYRNFLRRMKDHNPELRVIGLTATPYRLTSGPIC---------APDNILN 172 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + C +E+ ++ +++ G+L P R + D S L ++ G F E+++++ L + Sbjct: 173 KIC-FEVGVKELLQQGFLCP-LRSKASRQEIDASGLHVRA-GEFIESEVDK-LMNTGDLV 228 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 S+I+ +A RK V+IF +++HA+ ++ + D A + GDT + R ++E F Sbjct: 229 AQACSEIISYARERKAVIIFCCSIDHAQNVLAHIRKHDSTAEAVFGDTLPSFRAEILERF 288 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 KA + ++LVNV VLTTGFDAP++D + +LRPT S LY Q+VGRG RL P K DCL+LD+ Sbjct: 289 KAGKIKFLVNVGVLTTGFDAPNIDCVVLLRPTASPGLYYQMVGRGFRLHPDKKDCLVLDF 348 Query: 357 AGN-----PHDLYAPEVGTPKGKSDNVPVQVFCPAC 387 GN P D E PK + P+ CP C Sbjct: 349 GGNIERHGPVDSIQVE---PKADREE-PLGKTCPKC 380 >UniRef50_A0LBR5 Type III restriction enzyme, res subunit n=3 Tax=Proteobacteria RepID=A0LBR5_MAGSM Length = 538 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 145/406 (35%), Positives = 222/406 (54%), Gaps = 32/406 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLA 56 + LRPYQ++A+DA +F++ +I +PT GKSLV+A R A R+LV+ Sbjct: 1 MLELRPYQRQAIDAIYAYFQKKTGNCLICIPTAGGKSLVMATFIREAIEHYPETRILVVT 60 Query: 57 HVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 HV+EL++QNHA+ + +A I +AGL ++ +V+F +QSV + Q L+ Sbjct: 61 HVRELISQNHAELMGIWPDAPAGIHSAGLGARDVDAQVLFCGIQSVHKRAYDIQ-RCDLV 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 +VDE H I + Y++ L LT +NP+++++G TATP+RL G +++ + Sbjct: 120 LVDEAHLIPRTSNTMYRKFLEELTVINPYMKIIGFTATPYRLDSGLLHK---------GK 170 Query: 175 KALFRDCIYELPLRYMIKHGYLTP--PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 ALF D +++P+ +I G+L+P ++ D Q D S + + G F L + Sbjct: 171 DALFDDIAFDVPINDLIDEGFLSPLISKKTD---TQLDVSGVGTR-GGEFIAGQLEAAVD 226 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERD 290 Q +T + +I+ R+ ++F + V HA+ + + A + I G TP ERD Sbjct: 227 -QADVTRAAVEEIIALGQDRRAWLLFCSGVAHAEHVRDAVKARGYSCEGIFGHTPKEERD 285 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 +IE F+A + R L + VLTTGF+ VDLIA+LRPT+S LY QI GRG RL P K + Sbjct: 286 GIIEAFRAGQIRALAAMNVLTTGFNVKSVDLIAMLRPTQSAGLYVQIAGRGTRLHPEKEN 345 Query: 351 CLILDYAGN-----PHDLYAPEVGTPKGKSDNVPVQVFCPACGFAN 391 CL+LD+AGN P D V K + P +V CPAC N Sbjct: 346 CLVLDFAGNVARHGPIDQIQSFVKKDKEEPGEAPQKV-CPACQAVN 390 >UniRef50_B1M5E1 Helicase domain protein n=8 Tax=Alphaproteobacteria RepID=B1M5E1_METRJ Length = 569 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 210/409 (51%), Gaps = 38/409 (9%) Query: 2 IFTLRPYQQEAVDATLNHFRR----HKTPA-VIVLPTGAGKSLVIAELARLAR-----GR 51 + LR YQ+ ++DA + R P +IVLPTGAGK+LVIA LAR R Sbjct: 1 MLRLRDYQRASLDALSAAWARGGADDAAPGHLIVLPTGAGKALVIAALARETLDENPLAR 60 Query: 52 VLVLAHVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 V ++ H +ELVAQN ++ G A IF+AGL+R+E+ +V+ +QSVA LDA G Sbjct: 61 VAIVTHSRELVAQNFSELTRSWPGAPAGIFSAGLRRREAGAQVLVCGIQSVADRLDAI-G 119 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L+IVDE H I +++Y + L L P LR+ G TATP+RL G + + + Sbjct: 120 PRDLVIVDEAHLIPRAADTRYGRFLAGLRARTPGLRVAGFTATPYRLDSGRLDEGEHR-- 177 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFS---EAD 226 LF YE +I+ G+L P + Q D S + + EA Sbjct: 178 -------LFSGIAYEADTFTLIRRGFLAPLVS-KATLTQLDVSGVGRRGGDYIPGELEAA 229 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDT 284 +NR+ IT ++++ E+ R+ + F A + HA+ + + AE + ++G+T Sbjct: 230 VNRDW-----ITRAAVAELAEYGRARRAWLAFCAGLAHAEAVRDAVRAEGYSCESVSGET 284 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 P ERD ++ F+A + R L +V VL TGF+ P VDL+A+LRPT S LY Q VGR LR Sbjct: 285 PRRERDRIVAAFRAGQIRCLTSVGVLGTGFNVPEVDLVALLRPTRSTGLYVQQVGRALRC 344 Query: 345 APGKTDCLILDYAG-----NPHDLYAPEVGTPKGKSDNVPVQVFCPACG 388 APGK D LILDYAG P D T CP CG Sbjct: 345 APGKADALILDYAGLVRMHGPVDAVTVRSATQGLGGAGASRAKPCPGCG 393 >UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q076_9GAMM Length = 599 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 134/424 (31%), Positives = 206/424 (48%), Gaps = 53/424 (12%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIV-LPTGAGKSLVIAELARL-----ARGRVLVL 55 +++LRPYQQ A+D + RH IV GAGKS++IAEL + + R+++ Sbjct: 1 MYSLRPYQQRALDELMYWLNRHNDGNPIVDACVGAGKSIIIAELCKRIIELDPQARIVMC 60 Query: 56 AHVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSL 113 KEL QN K +A+ +A + +A L +K+ + +++F ++ S+A+ G+ ++ Sbjct: 61 VASKELCQQNLEKLRAIWEDAPAGVCSASLGQKDMNSQIIFATIGSIAKYAHEL-GKVNI 119 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 LI+DECH + D Y+ + + K +P++ ++G T TPFR W++Q Sbjct: 120 LIIDECHNVNSDNAGMYRTFIDDIKKYGSPYVCVIGFTGTPFRGDGIWLWQ--------- 170 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTP-------PERLDMPVVQYDFSRLQAQSNGLFSEA 225 + LF + + ++K G+L+P PE +D V+ S G + Sbjct: 171 GKDPLFAGTATRVTMDELLKLGFLSPLVVDQGTPETIDTTGVK--------TSMGDYVVK 222 Query: 226 DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE---------D 276 DL I +S + E A RK +IF T++HAK ++ L + Sbjct: 223 DL-ENAALDPVIIKKTVSDLCERGAERKKWLIFCVTIDHAKAVLDELKVTENEHFTLNLN 281 Query: 277 AALITGDTPGAERDVLIENFK-----AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESV 331 ++T T R ++ FK LVNVA LTTGFDAP DLIA+LRPT+S Sbjct: 282 PEMVTSKTSNIMRSDILARFKLPHNQPSAINCLVNVACLTTGFDAPSTDLIALLRPTKSP 341 Query: 332 SLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGK----SDNVPVQVFCPAC 387 LY QI GRG+R+A K DCL LDY DL + + K +D +CP C Sbjct: 342 VLYVQIAGRGMRIAEEKKDCLWLDYTSTTRDLGPVNLIKGRNKINVVTDGTAPFKYCPDC 401 Query: 388 GFAN 391 G N Sbjct: 402 GNMN 405 >UniRef50_A5A3T1 BcepGomrgp42 n=1 Tax=Burkholderia phage BcepGomr RepID=A5A3T1_9CAUD Length = 600 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 199/398 (50%), Gaps = 56/398 (14%) Query: 6 RPYQQEAVDATLNHFRRH--KTPAVIVLPTGAGKSLVIA-ELARL----ARGRVLVLAHV 58 R YQ VD + H R KT A+++ PTG GKS+VIA +ARL + R ++L H Sbjct: 5 RDYQGYGVDKIIEHIYRSGPKTNALLLYPTGTGKSVVIALAVARLFGDFSGTRAMMLTHS 64 Query: 59 KELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIV 116 KELV QN+ K + EA I+A GLKRKE + FGS+QSV + F ++ + Sbjct: 65 KELVGQNYKKLKEAWNEAPVGIYADGLKRKEYYYPCTFGSIQSVYNKPELF-APLHVMFI 123 Query: 117 DECHRIGDDEESQYQQILTHLTKVN-----PHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 DE H + D++ESQY+ + +T++N P + GLTAT +R+ +G M+ Sbjct: 124 DEAHMVSDNDESQYRSFINGVTEINAKHGLPPPVVYGLTATGYRMKQG---------MLT 174 Query: 172 GDEKALFR----DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 E LF DC + GYL PP V+ D S+++ + G ++E D Sbjct: 175 QGENPLFEEILVDCTSMEAFNWFFSEGYLVPPIPRPSKNVKVDLSKIRITA-GEYNEKD- 232 Query: 228 NRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLL--PAEDAALITGD 283 +E Q I II + + FAA+ R +IF++ VEHA+ + L E A + Sbjct: 233 QQEAFDQDPINRAIIDEALAFAASENRHKGIIFSSGVEHARHLCEELIRRGESATWVASK 292 Query: 284 -TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 ERD I + A F+++VN +LTTGFD P +D++ I R T SV L+ QI+GRG Sbjct: 293 GMSDTERDKRIAAYLAGEFKWMVNNGILTTGFDCPEIDIMVIARCTRSVGLWVQILGRGT 352 Query: 343 R---------------------LAPGKTDCLILDYAGN 359 R A K +CL+LD+ N Sbjct: 353 RPFWDTVGEWDLSTREGRLGSIAASPKQNCLVLDFGNN 390 >UniRef50_UPI0001911427 putative helicase n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001911427 Length = 93 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/92 (95%), Positives = 90/92 (97%) Query: 495 TYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPD 554 TYYDEDGADVSERFRL TPAQRTAFEQLFIRPHTRTPG+PLRWITAADI+AQQALLRHPD Sbjct: 2 TYYDEDGADVSERFRLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALLRHPD 61 Query: 555 FVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 FVVARMKGQYWQVREKVFDYEGRFR AHELRG Sbjct: 62 FVVARMKGQYWQVREKVFDYEGRFRRAHELRG 93 >UniRef50_UPI0001545E85 hypothetical protein ORF029 n=1 Tax=Pseudomonas phage 73 RepID=UPI0001545E85 Length = 551 Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 137/427 (32%), Positives = 211/427 (49%), Gaps = 56/427 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARG-----RVLVL 55 I+ R YQ EA + ++F+R V+ +PTG GKS+VIA R G R+++L Sbjct: 4 IYVPRWYQDEAEYSIFDYFQRGGVGNPVVAMPTGTGKSVVIANFIRRIFGYWPNQRIMML 63 Query: 56 AHVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVA----RNLDAFQG 109 HVKEL+ QN K ++ A I++AGL ++ +VFG VQSVA R L+ G Sbjct: 64 THVKELIEQNAEKLMSIWPTAPMGIYSAGLNSRDMIMPIVFGGVQSVAPAIKRGLEEDDG 123 Query: 110 EFS---------LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW 160 + LL++DECH + D E+S YQ I+ L K+NPHL+++G TATP+R+ G Sbjct: 124 RPAHLRHFGWRDLLLIDECHLLSDKEDSHYQYIIAELRKINPHLKVIGFTATPYRMKMGL 183 Query: 161 IYQFHYHGMVRGDEKALFRDCIYEL----PLRYMIKHGYLTP----PERLDMPVVQYDFS 212 I + +F D Y++ +I GYL+P P R ++ D S Sbjct: 184 I-----------TDNGIFTDICYDITGVESFNRLIAEGYLSPLIARPTRTEI-----DLS 227 Query: 213 RLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL 272 ++ + G F+ L + + + + + ++ E A R +IFA +++ + + ++ Sbjct: 228 KVGVTA-GEFNSKQLEAAVDTDE-VVFNAVREMTEIAYDRSTWLIFATGIDNTEHVANVI 285 Query: 273 PAEDAALIT--GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 + ++ P + FKA R LV+ LTTGFD P +D I L PT S Sbjct: 286 QSYGLEVLPVHSKLPSKTNTERLRAFKAGELRGLVSGQKLTTGFDHPPIDFIGDLNPTLS 345 Query: 331 VSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYA---PEVGTPKGK-SDNVPVQVFC 384 + Q +GRG R +P GK +CL D+AGN L P + GK + PV++ C Sbjct: 346 PGKHVQKLGRGTRPSPDTGKQNCLYADFAGNVRRLGPINDPRIPNRPGKGGGDAPVRI-C 404 Query: 385 PACGFAN 391 CG N Sbjct: 405 DVCGVYN 411 >UniRef50_A9DEN3 NTP dependent helicase n=1 Tax=Yersinia phage PY100 RepID=A9DEN3_9CAUD Length = 572 Score = 177 bits (450), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 148/476 (31%), Positives = 228/476 (47%), Gaps = 70/476 (14%) Query: 34 GAGKSLVIAELARLAR---GRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG 90 GAGK+ +I+++A GRV++LAH L Q + + + A +F+A +K+ G Sbjct: 6 GAGKTFMISDIAANTYRKGGRVVILAHQPVLAGQTYDELYEHDVPAAMFSAKFGKKQV-G 64 Query: 91 KVVFGSVQSVARNLDA-FQGEFSLLIVDECHRIGDDEE-SQYQQILTHLTKVNPH----L 144 KV GSV +VA L++ F LL++DE H++ +EE SQY +I+ H T V Sbjct: 65 KVTVGSVGTVANALNSHFMQPVDLLLIDEGHQVPVEEERSQYMKIINHFTCVAQQAGRIC 124 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPP--ERL 202 ++ T +PFR + + G K + D IY++ + + G+L+PP Sbjct: 125 HIITYTGSPFR------FCTRLDNLYIGPRKLFWEDIIYDISSTKLTEMGFLSPPVFGFP 178 Query: 203 DMPVVQYDFSRLQAQSNGL-FSEADLNRELKKQQ-RITPH-IISQIMEFAATRKGVMIFA 259 D YDFS ++ +S +SE +LN + + ++ H I++++++ R +IFA Sbjct: 179 DKDDAAYDFSAIKERSGTWEYSEEELNAIVNSEDGKLKLHKILAEVIDKTKDRNMRIIFA 238 Query: 260 ATVEHAKEIVGLLPA-----EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGF 314 +T HA+E+ L A L+T D+ E+D +E K +L+NV+ LTTGF Sbjct: 239 STKAHAREVKRALIAMGVEENQIGLVTDDSSEQEKDFAMEGAKKGTISWLINVSCLTTGF 298 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRL--------APGKTDCLILDYAGNPHDLYA- 365 DAP +D + LRP S++L Q +GRG RL K + L+LD+AG L Sbjct: 299 DAPLIDCVIFLRPVGSLTLLIQCMGRGARLLHPWMKEAGYIKDNYLVLDFAGVFDRLGYM 358 Query: 366 ---PEVGTPK-GKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGW------- 414 P +G KS+ CP C W A RRC+G Sbjct: 359 FDDPLLGQADLTKSEKKGELQQCPRCA----TWNGENA---------RRCRGLIKNIRED 405 Query: 415 -------FEDDDGHREQCDFRF-RFKNCPQCNAENDIAARRCRECDTVLVDPDDML 462 ED DG +CDF F + CP+C END + CR+C L+DP+ L Sbjct: 406 NPAALEAIEDIDG---RCDFFFIQGTICPECGTENDKTTKNCRKCKHELIDPNQAL 458 >UniRef50_B4UTX6 p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_BP163 Length = 576 Score = 174 bits (441), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 194/373 (52%), Gaps = 23/373 (6%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLA 56 + LR YQ+ ++DA ++ +IVLPTGAGK+LVIA+L A R+L + Sbjct: 1 MLDLRDYQRASLDALYAYWAEGGGNGLIVLPTGAGKALVIAKLIEELLADYPDMRILNVT 60 Query: 57 HVKELVAQNHAKYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 H LVAQN ++ L A IF+AGLKR+++ +V+F +QSV ++ G L+ Sbjct: 61 HDSRLVAQNFKEFIGLSPFAPAGIFSAGLKRRDARAQVLFCGIQSVWNKVEQI-GNVDLI 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 IVDE H I + +QY + + K NP R+ G TAT FR+ G + + Sbjct: 120 IVDEAHAISRNANTQYGKFFKAVRKHNPDSRVCGTTATDFRMDSGRLTDDLDDDEAVDEN 179 Query: 175 KA-----LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 A LF D +YE L +I+ GYLT RL Q +++ + G + Sbjct: 180 GAPVRFKLFHDVVYEAKLGDLIEQGYLT---RL---TSQKTAAKIDLKGIGTRGGEYIPG 233 Query: 230 ELKKQ-QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPG 286 ++ + +RI I++ M + R+ + F+ + E+A+ + + A++T D Sbjct: 234 QVAEAAERIIEEAIAEDMIASEGRRAGLFFSTSKENARHVAEAIRRHGRTCAVLTSDN-A 292 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 E D + +F+A + + +V+++TTG + P VD I++L T+S QI+GRG R +P Sbjct: 293 HETDKIFTDFRAGKIWAISSVSMITTGTNFPFVDFISLLLSTKSAGKLVQILGRGTRNSP 352 Query: 347 GKTDCLILDYAGN 359 GKTDCL+ D+ N Sbjct: 353 GKTDCLVADHGRN 365 >UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococcales RepID=A9G978_SORC5 Length = 557 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 187/366 (51%), Gaps = 37/366 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVA 63 LRPYQ+ AVDA L RR V+ LPTGAGK+++ + LARLAR +VLVLAH +EL+ Sbjct: 17 ALRPYQRAAVDAVLAARRRGVRRMVVCLPTGAGKTVIFSHLARLARRQVLVLAHREELLF 76 Query: 64 QNHAKYQ-ALGLEADI-FAAGLKRKESHGKVVFGSVQSV-ARNLDAFQG--EFSLLIVDE 118 Q K + AL +A + G R + +V+ S++S+ + L+ G + L+I DE Sbjct: 77 QAKDKIERALAGQATVAVEQGELRAPADARVIVCSIRSLHEKRLEQVTGGRDIGLVIYDE 136 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLR--LLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 CH D+ +++L L +P LLG TAT RGD K Sbjct: 137 CHHAPADDN---RRVLRQLGAFDPAWTGTLLGFTAT----------------TARGDGKG 177 Query: 177 L---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL-FSEADLNRELK 232 L F +Y L MI GYL P + D S L A GL F+ +L + Sbjct: 178 LDDVFEAIVYSRSLPEMIADGYLAPLTGYRV-ATATDLSPLAA--GGLDFATDELEEAVD 234 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERD 290 ++R + I E A R+ + F TV HA+ + L +A + GD P R Sbjct: 235 MEER-NALVARSIQELARDRR-TIAFCVTVAHARNLSKALNHLGVRSAYVHGDMPSDLRG 292 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 ++ +F+ +R + L NVAVLT GFD P V IA+ RPT S LY Q VGRG RL PGK D Sbjct: 293 RILADFREERVQVLTNVAVLTEGFDDPGVSCIAMARPTRSDGLYAQCVGRGTRLHPGKKD 352 Query: 351 CLILDY 356 CLILD+ Sbjct: 353 CLILDF 358 >UniRef50_Q8HAK4 Gp58 n=5 Tax=Caudovirales RepID=Q8HAK4_9CAUD Length = 614 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 192/373 (51%), Gaps = 31/373 (8%) Query: 4 TLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAEL-ARLAR----GRVLVLAH 57 T R YQ EA D K T + + TG GKSL+ A L R+A+ RV+ LA Sbjct: 5 TPRWYQAEAADELFGALATAKNTNPIAAIVTGGGKSLLNAMLIERIAQTWPQARVMSLAP 64 Query: 58 VKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS 112 EL+ QN + +A A I+ AGL+ K+ + +F + QSVAR F G F Sbjct: 65 SMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRMHQYIFATPQSVARQAKRF-GPFD 123 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++VDE H D ++ + I+ NPH+R +G+TAT F + KG V Sbjct: 124 FVLVDEAHLFNIDMKTA-RTIVDTFRAANPHVRFVGMTATDF-IMKGL-------KAVPL 174 Query: 173 DEKALFRDCIYELP----LRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 + LF +Y+L +++ GYL+P + Q D ++ + G F EA+L Sbjct: 175 TQCGLFDAKVYDLTSGRNFNRLVREGYLSPVVSPSLRFPQIDTEGVKTKG-GDFDEAELA 233 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPG 286 R + +T + +E A RK M FA +EHA I L E A +I G+ Sbjct: 234 R---RAMDVTRECVRVALEHAPDRKHFMWFAVNIEHAHMIEQALLDAGESAVVIHGELEK 290 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +ER + ++ + ++ R++V+VA+LTTGF+AP VD + LRPT S+ L++QIVGRGLR Sbjct: 291 SERVLGVDEYLKKQHRHIVSVAMLTTGFNAPFVDCLVALRPTRSLVLWRQIVGRGLRPYA 350 Query: 347 GKTDCLILDYAGN 359 GK + L+LD GN Sbjct: 351 GKENILVLDAGGN 363 >UniRef50_D1VXH8 DEAD/DEAH box helicase n=13 Tax=Bacteroidales RepID=D1VXH8_9BACT Length = 391 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/372 (30%), Positives = 201/372 (54%), Gaps = 30/372 (8%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVK 59 M + LR YQ++A DA + F+ K +I++ TG GKSL+IA++A +LV K Sbjct: 1 MKYILRDYQKQASDAAVKSFKSSKKINGLIIVSTGGGKSLIIADIASRLDSPLLVFQPSK 60 Query: 60 ELVAQNHAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 E++ QN AK Q+ G L+ ++A + K+ + ++ F ++ SV +++ F+ F ++VDE Sbjct: 61 EILQQNFAKLQSYGILDCGCYSASVGSKDIN-RITFATIGSVMNHMEDFK-HFKYVLVDE 118 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLR-LLGLTATPFRLGK---GWIYQFHYHGMVRGDE 174 H I + + Y++ +N R ++GLTATP+RL G + +F R Sbjct: 119 AHVI-NSKGGMYEKF------INAEERHVIGLTATPYRLSSYMAGSMLKFLTRTRPR--- 168 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL-FSEADLNRELKK 233 +F + +Y ++ G+L + D+ + D +++ S G + E L E ++ Sbjct: 169 --IFSEVLYVCQTSDLLAKGFLADLKYYDLTAINLD--NVRSNSTGADYDEKSLKMEYER 224 Query: 234 Q---QRITPHIISQIM-EFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 ++T + + + RKG+++F VE A+ +V L + + A ++TG+T + Sbjct: 225 SGFFDKLTTTTLRVLKPKSGVPRKGILVFTRFVEEAENLVRKLRSINIPAEVVTGNTSKS 284 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 +R+ ++E FK+ + + N VLTTGFD P +D + + RPT+S++LY Q VGR +R G Sbjct: 285 DREWMLEKFKSGEIKVIANAQVLTTGFDYPELDTVIMARPTKSLALYYQCVGRAIRPFKG 344 Query: 348 KTDCLILDYAGN 359 K D I+D GN Sbjct: 345 K-DGWIIDLCGN 355 >UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=Q59PU6_CANAL Length = 623 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 183/371 (49%), Gaps = 37/371 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LR YQQEA+D+ L I + TG+GK++V + L L +G+ LVL H + Sbjct: 34 FALRDYQQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQ 93 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGK----VVFGSVQSVARN--LDAFQ-GEFS 112 EL+AQ++ K + + + G++ ES + V+ SVQS+A N F +F Sbjct: 94 ELIAQSYDKITRINPDLRV---GIEMAESRARLNDDVIVASVQSLATNKRFTKFNPDDFK 150 Query: 113 LLIVDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 +I+DECH YQ+IL H TK N ++ ++G TAT R K + Sbjct: 151 TIIIDECHHAV---APTYQKILKHFKADTK-NTNINVIGFTATLARADKQML-------- 198 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 KA+F +++ L MI + L + + + + S ++ + +A N Sbjct: 199 -----KAVFDRIVFQRSLATMIFNKELASFKASKLYFKRLNLSNVKMKGKDYDPKALYNA 253 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 LK I H++ ME K +IF VEH +E+ LL + DA + +T + Sbjct: 254 VLKAG--INEHLLLAYMELEKEYKSTLIFCINVEHCREVCALLQKQGVDARYVISETSNS 311 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER ++ +FK +F L NV V T G D P++D I + RPT+S L Q++GRGLRL Sbjct: 312 ERKTIVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKE 371 Query: 348 KTDCLILDYAG 358 K+ C ++D G Sbjct: 372 KSHCHVVDLVG 382 >UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=C4YDS3_CANAL Length = 646 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 117/371 (31%), Positives = 182/371 (49%), Gaps = 37/371 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LR YQQEA+D+ L I + TG+GK++V + L L +G+ LVL H + Sbjct: 34 FALRDYQQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQ 93 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGK----VVFGSVQSVARN--LDAFQ-GEFS 112 EL+AQ++ K + + + G++ ES + V+ SVQS+A N F +F Sbjct: 94 ELIAQSYDKITRINPDLRV---GIEMAESRARLNDDVIVASVQSLATNKRFTKFNPDDFK 150 Query: 113 LLIVDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 +I+DECH YQ+IL H TK N ++ ++G TAT R K + Sbjct: 151 TIIIDECHHAV---APTYQKILKHFKADTK-NTNINVIGFTATLARADKQML-------- 198 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 KA+F ++ L MI + L + + + + S ++ + +A N Sbjct: 199 -----KAVFDRIAFQRSLATMIFNKELASFKASKLYFKRLNLSDVKMKGKDYDPKALYNA 253 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 LK + H++ ME K ++F VEH +E+ LL + DA +T T + Sbjct: 254 VLKAG--VNEHLLLAYMELEKEYKSTLVFCINVEHCREVCVLLQKQGVDARYVTSKTSNS 311 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER ++E+FK +F L NV V G D P++D I + RPT+S L Q++GRGLRL Sbjct: 312 ERKTIVEDFKQGKFPVLCNVTVFAEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKE 371 Query: 348 KTDCLILDYAG 358 K+ C ++D G Sbjct: 372 KSHCHVVDLVG 382 >UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida RepID=B9W8D3_CANDC Length = 654 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 179/371 (48%), Gaps = 37/371 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAHVK 59 F LR YQQ+A+D L I + TG+GK++V + L L + + LVLAH + Sbjct: 31 FPLRDYQQKAIDLILESSGSGVKRQAIEMATGSGKTVVFSHLIPLLKREGAKTLVLAHTQ 90 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVARN--LDAFQ-GEFSLLI 115 EL+ Q+ K + + + G R V+ SV S+AR+ L F EF +I Sbjct: 91 ELITQSRDKINKVNPDLKVGIEMGKVRSTPDDDVIVASVMSLARSNRLARFDPDEFKTII 150 Query: 116 VDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +DECH Y +IL H TK + + ++G TAT + R Sbjct: 151 IDECHHAI---APSYLKILKHFKADTK-DTDVHVIGFTAT----------------LART 190 Query: 173 DEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 D++ L F +++ L MI++ L + ++ + + + + + G + + L Sbjct: 191 DKQKLGTVFDKIVFQRSLPTMIENKELAEFKISNVSIKNLNLTNV-PKKGGDYDSSSLYL 249 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 L K I I+ ME A K +IF VEH +E+ GL + DA + G+T Sbjct: 250 ALNKVD-INEKILLAYMELAKDYKSTIIFCVNVEHCREVCGLFQQQGIDAQYVLGETSRI 308 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER+ ++E+FK +F L NV V T G D P++D I + RPT S SL Q++GRGLRL Sbjct: 309 EREFIVEDFKQGKFPVLCNVGVFTEGTDIPNIDSIILARPTMSQSLMIQMIGRGLRLHKE 368 Query: 348 KTDCLILDYAG 358 K+ C ++D G Sbjct: 369 KSHCHVIDLVG 379 >UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T4_9BACT Length = 551 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 187/387 (48%), Gaps = 62/387 (16%) Query: 5 LRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELAR--LARGRVLVLAHVKEL 61 LRPYQQ AV A +R +++VLPTG GK++V +AR GRVL+LAH +EL Sbjct: 3 LRPYQQAAVTAIEEGWRDGSLRKSLLVLPTGTGKTVVFCTVARQTTGDGRVLILAHREEL 62 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKES----HGKVVFGSVQSV--ARNLDAFQGE-FSLL 114 + Q KY + E AA K S VV GSVQ++ + L F + FS + Sbjct: 63 IEQAREKYYRITGE---IAAKEKAHCSCFGDPASVVVGSVQTLQNVKRLSKFPADYFSTI 119 Query: 115 IVDECHR---IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 I+DE H +G YQ++L H P R+LG+TATP R Sbjct: 120 IIDEAHHALAVG------YQRVLEHF----PRARVLGVTATP----------------DR 153 Query: 172 GDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL---FSEA 225 GD++ L F YE L+ I GYL P L P+ + D S ++ + F A Sbjct: 154 GDKRNLAEYFDGVAYEYSLKSAIADGYLCPIRALTAPL-RLDVSNVKTSRSKFGNDFDRA 212 Query: 226 DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTP 285 +L+ L++ P I I E A+ RK V +F V A++ E A L + Sbjct: 213 ELSVALEE---YLPQIAQCIKENASARKTV-VFLPLVSIAQQF--QRECEAAGLEAREVN 266 Query: 286 GAERDVLIENF----KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G E D E KA L N +LT G+D P VD + +LRPT+ +LY Q++GRG Sbjct: 267 G-ESDNRAETLAWFDKAGPGSVLCNAMLLTEGWDCPSVDCVVVLRPTKVRALYCQMIGRG 325 Query: 342 LRLAPGKTDCLILDY--AGNPHDLYAP 366 R+ PGK + LILD+ + HDL P Sbjct: 326 TRICPGKENLLILDFLWLSDKHDLCKP 352 >UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYC9_ALIAD Length = 581 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 173/370 (46%), Gaps = 28/370 (7%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-----LARGR-VLV 54 M LRPYQQ AVDA + +IVLPTGAGK++V +AR ++R R +LV Sbjct: 1 MAIQLRPYQQAAVDAFFQALAEGRKRQLIVLPTGAGKTIVFGSVARRFHEEVSRERPILV 60 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 +AH EL+ Q K + EA I R E G V+ S Q++ Q L+ Sbjct: 61 IAHRTELLDQAEQKIHFVWPEAFIGRIQGARNEQLGDVLLASTQTLVAGRRIPQP--GLI 118 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 I DECH + + L P L LG+TATP R + + GD Sbjct: 119 IYDECHHSRAEGALGVLERLGVFESDGPPL--LGVTATPSRSDRTEL----------GD- 165 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 +F YE + MI GYL+ + + V + ++ + G ++ DL+ + + Sbjct: 166 --IFEHLTYERTILDMIMDGYLSDVRGVKVEVPGLNLGAIRT-TAGDYNSKDLSYVMNIE 222 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 + ++ ++ A RK ++FA V+HA + A + G ER + Sbjct: 223 SALDA-VVDAVVTHAPGRK-CLVFAVDVKHAHALAERFQKRGIACAAVDGAMKAEERAAI 280 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 ++ F R LVN +LT G+D P VD + I RPT S +LY Q+VGR LRL P KTD L Sbjct: 281 LQAFAENRLCVLVNCQILTEGYDQPDVDCVVIARPTRSQALYVQMVGRALRLHPDKTDAL 340 Query: 353 ILDYAGNPHD 362 +LD G D Sbjct: 341 VLDLTGASDD 350 >UniRef50_B5ZFR8 Type III restriction protein res subunit n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFR8_GLUDA Length = 475 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 132/444 (29%), Positives = 199/444 (44%), Gaps = 68/444 (15%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV---IAELARLARGRVLVLAHV 58 + LRPYQQ+A+D + FR ++V PTGAGK+++ IA+ A + RVL++AH Sbjct: 1 MIQLRPYQQQAIDGVRSAFRDGHRAPLLVAPTGAGKTVMFSHIAQSASAKQSRVLIIAHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVV-FGSVQSVARNLDAFQGEFSLLIVD 117 KEL+ Q K G++ I A E G +V SVQ++AR LDA F L+I+D Sbjct: 61 KELIRQASRKLSDTGVDHGIIA---PWAEPTGHLVQVASVQTLARRLDALP-RFDLIIMD 116 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKA 176 E H + P ++LG+TATP R+ G+G + + Sbjct: 117 EAHH-------AVAGTWAKVIAAQPWAKILGVTATPERMDGRG----------LGANAGG 159 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 +F + + +I+ +LTP R+ PV D + ++ ++ G + A L++ + + Sbjct: 160 VFDMLVMGPTIGELIQGEFLTP-SRVFAPVGAPDLTGVKTRA-GDYDIASLSKVMAE--- 214 Query: 237 ITPHIISQIMEFA---ATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDV 291 P ++ +E A+ + F A VE AK A G PG ERD Sbjct: 215 --PKLVGDAVEHYGRYASGLPAIAFCACVEDAKTYADAFCRAGWRATAAYGAMPGDERDA 272 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 I + L +++ G D P V + +LRPT+S+ L+ Q +GRGLR PGK+ Sbjct: 273 AIGGLATGAVQVLTTCDLVSEGLDVPCVGAVILLRPTKSLGLHVQQIGRGLRPMPGKSHL 332 Query: 352 LILDYAGN---------PHDLY-----APEVGTPKGK-------SDNVPVQVFCPACGFA 390 ++LD+AGN PHD + G P + N V C CG Sbjct: 333 IVLDHAGNTFNHGLPDQPHDWSLDGRKKKDKGEPVATWRCEHCFAMNSAVMRVCAECGER 392 Query: 391 NTFWGK---------TTADGTLIE 405 GK ADG LIE Sbjct: 393 RASEGKDEDDVERAAEVADGELIE 416 >UniRef50_A5PJ16 HelA n=4 Tax=Siphoviridae RepID=A5PJ16_9CAUD Length = 657 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 135/535 (25%), Positives = 227/535 (42%), Gaps = 91/535 (17%) Query: 8 YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAHVKELVAQ 64 YQ A ++ P + AGK+++ A +A R + L LA E+V Q Sbjct: 34 YQCVAYAEIAKRLSKYVDPFFVKAAVSAGKTIIFAMVAAQCRKMGLKALFLARQSEIVDQ 93 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEF--SLLIVDECHRI 122 + + A G+ ++ AGL K ++ +V GS +V L+ G++ +L +DECH++ Sbjct: 94 DSKEISAFGVPNSVYCAGLNTKSAYFPIVVGSEGTVIGGLNKALGDYVPQVLGIDECHQV 153 Query: 123 G--------DDEESQYQQILTHLTKVNPHLRLLGLTATPF---------RLGKGWIYQFH 165 ++ ES Q + V + L+G + R + + +Q Sbjct: 154 NWNDIVEAEENGESIEQMMTPKGEPVEGNPLLIGSGRAQYTIIIAEMRRRCLETYGHQLR 213 Query: 166 YHGMV----RGDEKAL---------FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS 212 GM RG E L +R+ I + Y++K G + P ++ + YD S Sbjct: 214 IFGMTGSEYRGIEPILVEDKRIPGFWREQITNIDTDYLVKFGSVVPTYFGNVGDLGYDLS 273 Query: 213 RLQAQSNGLFSEAD------LNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAK 266 ++ D ++ ++ + +T I+ + E R ++ A H K Sbjct: 274 EFTPVHEFGVADYDQKQLKAMSDKIHQSGTMTQKIMQMVHEVMKNRLCALVTCADERHCK 333 Query: 267 EIVGLLPA-EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAIL 325 E LP+ +ITG T +R + +++ R +Y+ V LTTG + P D IL Sbjct: 334 EAAAALPSGTKYHIITGKTGEKQRRLWLDDAYEGRVKYIFQVQALTTGVNVPPWDTSVIL 393 Query: 326 RPTESVSLYQQIVGRGLR---------LAPGKTDCLILDYAGNPHDL----YAPEVGTP- 371 R S++L Q++GRG+R L KTD L+LD++G ++ + P + Sbjct: 394 RKIGSLTLLTQLLGRGMRQLKTYHKEVLGMHKTDHLVLDFSGTMFEMGNLYFDPMLEQAQ 453 Query: 372 ---KGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFR 428 + D P FCP CG N+F + RRC ED++G+R C+ Sbjct: 454 FQLRKSQDKDP--KFCPICGTENSF-------------YARRCIN--EDENGNR--CEHF 494 Query: 429 FRFKNCPQ-------------CNAENDIAARRCRECDTVLVDPDDMLKAALRLKD 470 + F+ C C A+ND+AAR CR C+ L DP+D L + K+ Sbjct: 495 WTFQECEDQIDERTKKVIVKGCGAKNDVAARVCRCCNVQLRDPNDNLSGKMYRKN 549 >UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase irc3 n=2 Tax=Schizosaccharomyces RepID=IRC3_SCHPO Length = 606 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 117/373 (31%), Positives = 177/373 (47%), Gaps = 45/373 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVLVLA 56 LRPYQ+E + A LN F K + L TG+GK+ + + A + L+L Sbjct: 25 LKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLILV 84 Query: 57 HVKELVAQ--NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEFS 112 H KEL Q H + ++L ++ G + V SV S+ R L F Sbjct: 85 HRKELALQALKHCR-ESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLLKYNPLNFK 143 Query: 113 LLIVDECHRIGDDEESQYQQILTHL------TKVNPHLRLLGLTATPFRL-GKGWIYQFH 165 LLI DE H + Y +IL H +KVN ++GLTAT FR GKG Sbjct: 144 LLIFDEVHHMA---SPSYLRILEHFGAESEKSKVN----VIGLTATLFRADGKGLACGLD 196 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA 225 + +Y MIK +L P+ ++ +++ + A S+ + Sbjct: 197 --------------EIVYHRHFVDMIKDNWLVEPKVIN---IKWSTDLVLADSSSFLDQE 239 Query: 226 DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGD 283 L +E + ++ I I +E A+ R ++F VEH+ ++ DA + G+ Sbjct: 240 KLKKEAQSEKAIF-EIPRAWLEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGE 298 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 T +ER+ LI++F+ ++F LVN VLT G D P++D + I RPT S +L Q++GRGLR Sbjct: 299 TNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMIGRGLR 358 Query: 344 LAPGKTDCLILDY 356 L GK DCLILD+ Sbjct: 359 LHEGKRDCLILDF 371 >UniRef50_B3JH18 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JH18_9BACE Length = 458 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 186/371 (50%), Gaps = 26/371 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 + TLR Q E ++ + F K P++IVLPT GKS++ A +A+ + +++VL KE Sbjct: 1 MITLRENQTEPINKAIQFFTEKKPKPSLIVLPTAWGKSILTAFVAKNSNDKMIVLQPSKE 60 Query: 61 LVAQNHAKYQAL----GLEADIFAAGLKRKE-SH-GKVVFGSVQSVARNLDAFQGEFSLL 114 L+ QN+ KY +L L A I++A RK+ +H GS++S+ + F+ + Sbjct: 61 LLEQNYLKYCSLCGNFALNAGIYSASFGRKDIAHITYATIGSIKSLGAKFKSLG--FTKM 118 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-----GKGWIYQFHYHGM 169 ++DE H + +S +L K + +LG+TATP +L G + Sbjct: 119 LIDEAHLYPREADS----MLGRFLKESGITHVLGITATPVKLQTNRDKDGQNFSKLVMLT 174 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN-GLFSEADLN 228 R + F++ I+ + M++ G+ +P L +D S L S+ ++E + Sbjct: 175 SRSKKGNFFKEIIHVGQVAEMVRLGFWSP---LQYETTGFDSSLLVFNSSKSEYTEESVQ 231 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAE 288 R I Q ++ + R+ +++F +VE A + P ++A+I G+ E Sbjct: 232 RAYDANG--GSEQIVQALDRHSDRRHILVFVPSVEDAITLSKKYP--NSAVIYGEMDKTE 287 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R +I F+A R + NV VL+TGFD +D I + T S++LY QI+GR R+ P K Sbjct: 288 RSQVITRFRAGEIRVIFNVRVLSTGFDYTGIDCIVLGVSTASIALYYQIIGRATRIDPEK 347 Query: 349 TDCLILDYAGN 359 TD LI+D GN Sbjct: 348 TDALIVDLGGN 358 >UniRef50_A0L703 Type III restriction enzyme, res subunit n=13 Tax=Proteobacteria RepID=A0L703_MAGSM Length = 560 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 175/371 (47%), Gaps = 41/371 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGK----SLVIAELARLARGRVLVLAHVKE 60 LRP Q++ V+ ++ H + V PTGAGK S VI + R G+ VLAH E Sbjct: 3 LRPRQKQFVERSVAALHEHGN-TLGVAPTGAGKTVMLSAVIGNMLRNDGGKACVLAHRDE 61 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEFSLLIVDE 118 L QN K+ + + K G+ F V ++AR NLD E LL++DE Sbjct: 62 LTRQNVMKFTKVNPGFSTSVVDARGKSWRGRATFAMVPTLARQKNLDTMP-ELGLLVIDE 120 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL- 177 H + Y++I+ NP + GLTATP R GD+KAL Sbjct: 121 AHHAA---ANSYRRIIDTALDRNPDCCIYGLTATPNR----------------GDKKALR 161 Query: 178 --FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 F + ++ L +I G L P + V D + ++ F A++++ + K Sbjct: 162 PIFSNVADQVRLGELITAGNLVKPRTFVVDVGTQDALKSVRKTADDFDMAEVSQIMNKAP 221 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 +T +I E A TRK ++F +TV+HA+ + D A ++ G+ AER + Sbjct: 222 -VTEAVIKHWKEKAGTRK-TIVFCSTVDHAQNVTDAFNNADVEAVMVHGELTTAERKAAL 279 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR-----LAPG- 347 F+ +VNVAVLT G+D P + +LRP+ S Q+VGRGLR L PG Sbjct: 280 ARFEKGSAMVVVNVAVLTEGYDHPPTSCVVLLRPSSYKSTMIQMVGRGLRTVDPALFPGL 339 Query: 348 -KTDCLILDYA 357 KTDC++LD+ Sbjct: 340 VKTDCIVLDFG 350 >UniRef50_B8I140 Type III restriction protein res subunit n=16 Tax=root RepID=B8I140_CLOCE Length = 536 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 189/366 (51%), Gaps = 47/366 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARG-RVLVLAHVKEL 61 LRPYQQEA A LN + + ++VL TG GK++V +++ + G RVL+LAH EL Sbjct: 3 LRPYQQEAKQAVLNEWGKGILKTLLVLVTGGGKTIVFSKITEECVRNGERVLILAHRGEL 62 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKES----HGKVVFGSVQSVARN--LDAFQGE-FSLL 114 + Q K L ++ A K +ES +VV GSVQS+ R L+ F + F+ + Sbjct: 63 LDQAADK---LKKATNLGCATEKAEESCIGSWFRVVVGSVQSLMREKRLNQFPKDYFNTI 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 I+DE H D YQ++L+H + ++LG+TATP R + QF Sbjct: 120 IIDEAHHCLSD---GYQRVLSHFNEA----KVLGVTATPDRGDMRNLGQF---------- 162 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 F YE L IK G+L P + +P+ + D S + Q+ G F DL L+ Sbjct: 163 ---FESLAYEYTLPRAIKEGFLCPIKAQTIPL-KLDLSGVSVQA-GDFKNGDLGNALE-- 215 Query: 235 QRITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERD 290 P++ I+ M T ++F ++ +++ +L + AA + G++ +R+ Sbjct: 216 ----PYLESIADEMLKCCTDHKTVVFLPLIKTSQKFKDILNKKGFRAAEVNGNS--QDRE 269 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 ++ +F + ++ + N +LT G+D P VD I +LRPT+ SLY Q+VGRG RL GK Sbjct: 270 QVLADFDSGKYNVICNSMLLTEGWDCPSVDCIVVLRPTKIRSLYVQMVGRGTRLHSGKDH 329 Query: 351 CLILDY 356 L+LD+ Sbjct: 330 LLLLDF 335 >UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2R4_9BACT Length = 572 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 121/393 (30%), Positives = 195/393 (49%), Gaps = 60/393 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKEL 61 FTLR YQ A DA +++H++ + VLPTG GK+++ AE+ R + GR LV+AH +EL Sbjct: 4 FTLRDYQAAAADAVEEKWKKHQS-TLCVLPTGCGKTVLFAEIIRRRQPGRALVIAHREEL 62 Query: 62 VAQNHAKYQAL-GLEADIFAAGLKRKES---HGKVVFGSVQSVA-----RNLDAFQGE-F 111 + Q K +A+ GLEA++ A S VV S+Q++ R ++ F+ E F Sbjct: 63 IVQAVKKIEAVTGLEAEVEMAEQVASNSLFHKTPVVVASIQTLVSGGNRRRMERFRPEDF 122 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 ++VDE H + Y+ +L + + N +LLG+TATP R Sbjct: 123 DTIVVDEFHHA---TAASYRAVLEYFLR-NEKAKLLGVTATPDR---------------- 162 Query: 172 GDEKALFRDC---IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 D+ AL C ++ +R I G+L P E+ + + D+S++ + L S A+L Sbjct: 163 ADQAALGLVCESVAFDYEVRAAIDDGWLVPVEQQMVTIDGLDYSQIHTTAGDLNS-AELA 221 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP---AEDAALITGDTP 285 + +Q+R+ + +E A +R+ ++ F ++V+ A+ +L A A + G T Sbjct: 222 -SVMEQERVMHGTCAATIEIAGSRQTIL-FTSSVKQAEMACNILNRHRAGIAQFVCGATD 279 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER ++ + L NV V T GFDAP V++I + RPT+S +LY Q+ GR R Sbjct: 280 REERRKIMRRVLDGSTQILCNVGVATEGFDAPGVEVIVMGRPTKSRALYAQMAGRATRPL 339 Query: 346 PGKTD-------------------CLILDYAGN 359 PG D CL++D+ GN Sbjct: 340 PGVVDGPATPAERRAAIAASAKKACLLVDFVGN 372 >UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=D2MPK0_9FIRM Length = 528 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 121/379 (31%), Positives = 182/379 (48%), Gaps = 51/379 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARG-RVLVLAHVKEL 61 LRPYQ+EA A + ++VLPTG GK++V +++ ++ G RVLV+AH EL Sbjct: 3 LRPYQEEARRAIEKEWASGVKNTLLVLPTGCGKTVVFSKVIEDQVKEGKRVLVMAHRGEL 62 Query: 62 VAQNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVD 117 + Q K ++ GL I A + +VV GSVQS+ R L F + F +IVD Sbjct: 63 LDQATDKLHKMTGLTCAIEKADQSCLGTWNRVVVGSVQSLMRPSRLAKFNKDYFDAIIVD 122 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H D Y ++L H + N +LG+TATP R G +L Sbjct: 123 EAHHAVSD---TYTRVLEHFDQAN----VLGVTATPER------SDMRKLG-------SL 162 Query: 178 FRDCIYELPLRYMIKHGYL------TPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 F+ YE + IK GYL T P ++DM V A G + L + Sbjct: 163 FQSLAYEYSIVQAIKEGYLCKIKAQTVPLKIDMNNVSVTVGDFSANEIGTALDPYLEQ-- 220 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAER 289 I+ ME + ++F + +++ +L AA + G++ +R Sbjct: 221 ----------IATEMETVCKDRKTVVFLPLIATSQKFKNILINHGFKAAEVNGNSD--DR 268 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + ++++F ++ + N +LT G+D P VD I +LRPT+ SLY Q+VGRG RL+PGK Sbjct: 269 EQILKDFNDNKYNVICNSMLLTEGWDCPDVDCIVVLRPTKVRSLYCQMVGRGTRLSPGKE 328 Query: 350 DCLILDY--AGNPHDLYAP 366 D LILD+ H+L P Sbjct: 329 DLLILDFLWLSERHELCRP 347 >UniRef50_C5UXP6 Type III restriction enzyme, res subunit n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXP6_CLOBO Length = 538 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 107/367 (29%), Positives = 174/367 (47%), Gaps = 43/367 (11%) Query: 5 LRPYQQEAVDATLNHFRRHK--TPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQ L + R K V+ + TG GK++++A +A+ GR L++ EL Sbjct: 3 LRDYQI----TCLENVREMKLGEKKVVHVATGGGKTVIMASIAKETIGRTLIIVGQTELR 58 Query: 63 AQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVA-----RNLDAFQ-GEFSLLI 115 Q K + + G + + + E +V + QS+ R D + G F +++ Sbjct: 59 KQTIDKLKKVCGEDVSVGSVQGNLDEIDKDIVVSTRQSLTHPKSHRMNDILENGNFEVVM 118 Query: 116 VDECHR-IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 +DECH+ +G Q+ + V + +++G TATP+ + Sbjct: 119 IDECHQAVG--------QVKKIIDIVGDNCKVIGFTATPYN----------------KEM 154 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 K++F +YE + +I GYL P+ + D S ++ G F ++ L + Sbjct: 155 KSIFDGFVYEKDILSLIDEGYLCQPKCFRVNT-NCDISSVKTVG-GEFVQSQLENAVNND 212 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVL 292 R T I+ +E A RK ++FA+ ++HA + A I ER+ Sbjct: 213 DRNTL-IVKAYLEKANDRKNCIVFASGIDHATNLAKCFNVNGISAKSIDSTVDSIEREQT 271 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 + +FK +F+ LVNVA+LTTGFD ++ + + RPT+S LY Q +GRGLR+A GK DCL Sbjct: 272 LNDFKEGKFKILVNVAILTTGFDFEELECVIMARPTKSKILYTQCIGRGLRIADGKKDCL 331 Query: 353 ILDYAGN 359 ILD N Sbjct: 332 ILDIVDN 338 >UniRef50_Q3V5F4 Gp41, helicase n=1 Tax=Corynebacterium phage BFK20 RepID=Q3V5F4_9CAUD Length = 537 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 181/373 (48%), Gaps = 44/373 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAHVKEL 61 LR YQ EAV+A L + K +VLPTG GKS VIA+LA +A RV++LAH +EL Sbjct: 8 LRAYQTEAVNAVLGEWVDGKR-TCVVLPTGTGKSTVIAKLAEIAYKAGQRVILLAHRREL 66 Query: 62 VAQNHAKYQALGLEA---DIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQGEFSLLIV 116 + Q + + + DI +R + +V S Q++ A L A GE ++++V Sbjct: 67 LDQMAQSIRMVAPQIPTDDIGFVQAERDQPERPIVCASFQTLMSASRLQAV-GERTVVLV 125 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHGMVRGD 173 DE H S Y +IL+ P+ G TAT R G Sbjct: 126 DEVHH---SAASTYAEILS-----APNFDGAFKAGFTATLQRADGGL------------- 164 Query: 174 EKALFRDCI-YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 A + D I +E LR+ + G+L PP+ + + D + ++ + NG ++ DL+ + Sbjct: 165 --ADYWDSIAFERDLRWALDEGFLVPPQGKTVVIPGLDTTNIKLR-NGDYAAGDLSEVMM 221 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERD 290 T + I A R+ ++IF A VEH + + L A AL+ G T ER Sbjct: 222 SSVDST---VEAIHTHAPDRR-MLIFGAGVEHCQALSDTLSATGIHTALVVGSTSSEERT 277 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 L E F A R + LV V VLT G D P D + + RPT S L+ Q+VGR LRL K D Sbjct: 278 ELFEEFTAGRVQALVTVQVLTEGTDLPACDCVVLARPTRSAVLFTQMVGRALRLHQDKND 337 Query: 351 CLILDYAGNPHDL 363 L+LD AG+ D+ Sbjct: 338 ALVLDLAGSTRDV 350 >UniRef50_Q856Y4 Gp50 n=7 Tax=unclassified Siphoviridae RepID=Q856Y4_9CAUD Length = 571 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 129/399 (32%), Positives = 183/399 (45%), Gaps = 36/399 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAHVKEL 61 LR YQ AV A + +VLPTGAGKS VI +LA A RV+ LAH EL Sbjct: 12 LRSYQTAAVAAVERDWESGTKRTGVVLPTGAGKSTVIGKLASNAYRSGKRVVALAHRAEL 71 Query: 62 VAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEFSLLIV 116 + Q A+ +DI + + H +VF S+Q++A + +A G +++ Sbjct: 72 LFQMRRDMLAVDPTIPASDIGIVMAEHDDHHAPIVFASLQTLAHAKRRNAL-GRRDVILW 130 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H G + + L T H L G TAT +R KG I G+ GD Sbjct: 131 DEFHHAGAEGFHATFEELGGYT----HAYLCGFTATMYRNEKGTI------GL--GD--- 175 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + + YE LR+ IKHG+L P + + D G F N EL + Sbjct: 176 VIQKVSYEKDLRWAIKHGFLVQPRGKTVRIKNLDKLDDVRTVAGDFK----NDELAEVME 231 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIE 294 + +E A + ++FAA+V+ A I + A +TG P AER+ + + Sbjct: 232 AAVEYVVDAIELHARERTNIVFAASVDGAHMIADAINERGMTAEAVTGSMPHAEREQVYD 291 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 ++ + LV V VLT G D P D + + RPT S +LY Q+VGR LRL PGKTD L+L Sbjct: 292 RYRTGVTKNLVTVMVLTEGADFPMCDTVVMARPTRSKNLYAQMVGRALRLFPGKTDALVL 351 Query: 355 DYAGNPH-----DLYAPEVGTPKGKSDNVPVQV-FCPAC 387 D +G+ +L G P + D + CP C Sbjct: 352 DLSGSTRAMKLVNLTDLSPGAPVEEVDEQGQAIAVCPTC 390 >UniRef50_C3R6R4 DEAD/DEAH box helicase n=33 Tax=Bacteroides RepID=C3R6R4_9BACE Length = 789 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 178/384 (46%), Gaps = 64/384 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR----VLVLAHVK 59 +LR YQQE + H++ ++ +PTG GK+ ++A + R R V ++AH + Sbjct: 7 SLRDYQQEMKSRLFKEWEFHQS-VMVQMPTGTGKTHLLAAVVREFLHRSGTCVWIVAHRR 65 Query: 60 ELVAQ---NHAKYQALGLEADIFAA-GLKRK----ESHGKVVFGSVQSVARNLDAFQGEF 111 ELV Q A+Y +G E D G RK E G V S+Q ++RN + Sbjct: 66 ELVQQIEETVARY-GMGKEPDKSGKNGRMRKNSMPEESGTVKVLSIQWLSRNWKNMEESP 124 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMV 170 L+++DE H + L K P R LG+TATP RL GKG+ Sbjct: 125 GLIVIDEAHH-------ALAETYKELWKRYPEARKLGMTATPCRLNGKGFT--------- 168 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS------------ 218 LF I + I G+L+ +D+ ++A S Sbjct: 169 -----DLFDTLITSWSIAEFIGKGWLSA----------FDYVSIRANSREQRMINSLKKR 213 Query: 219 --NGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE- 275 +G + ++N L +Q I + + ++A +KG+ ++A ++ HA++I A Sbjct: 214 GADGDYQVKEMNEVLNRQVSIR-RLYESVEKYANGKKGI-VYAVSIAHARQIAACYSAHG 271 Query: 276 -DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 +A I TP +ER L+E FK R R LVNV + + GFD P V+ + + RPT S+ Y Sbjct: 272 VEAVAIDSKTPASERRELVEGFKQGRTRVLVNVDIFSEGFDCPDVEFVQLARPTLSLVKY 331 Query: 335 QQIVGRGLRLAPGKTDCLILDYAG 358 Q VGRGLR + K C+++D G Sbjct: 332 LQQVGRGLRKSGDKESCMLIDNVG 355 >UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1_ANASP Length = 629 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 116/371 (31%), Positives = 183/371 (49%), Gaps = 37/371 (9%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARGR-VLVLAHV 58 +F LR YQQ+ + T + ++ L TG GK+++ AE+A A+G VLV+AH Sbjct: 1 MFNLRDYQQDLISKTFAAWSSGIRKVLLQLSTGGGKTVIFAEIASKMTAQGEGVLVVAHR 60 Query: 59 KELVAQNHAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +EL+ Q K A+ L+ I AG K +S ++ S+Q++AR + L+I+D Sbjct: 61 EELILQAAEKLTAVTKLQPGIIKAGYKSTDSPLQI--ASIQTLARRQTYPSAQ--LVIID 116 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y+++L PH +LGLTATP R +G+ + + Sbjct: 117 EAHH---SSANSYRKLL----DAYPHALVLGLTATPRREDG--------YGL-----RDI 156 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F I + + +I GYLT + + + +SR + F+ +L E+ + Sbjct: 157 FDHLICSVSTKELITLGYLTDYKL----IAGFKYSRHKVPQKRDFTRKELE-EVASDYKP 211 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIEN 295 + ++ Q F A +K V IFA V H+K+I A+ + G+TP ER ++ Sbjct: 212 S-EVLKQWQNFCAGKKTV-IFAVNVMHSKQIAAAFCADGITCEHLDGETPHNERQAILNR 269 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F++ + + + N A+LT GFD P I RPT SV+L+ Q++GR LR APGK ILD Sbjct: 270 FRSGQTQVISNCAILTEGFDCPDSSAAVIARPTSSVTLWLQMIGRVLRPAPGKDYATILD 329 Query: 356 YAGNPHDLYAP 366 N L P Sbjct: 330 MTDNWFRLGRP 340 >UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJT9_RHOVA Length = 473 Score = 140 bits (354), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 183/362 (50%), Gaps = 29/362 (8%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAH 57 M F LRPYQ + + T + R K+ ++ LPTG GK+ + A +A A + RV+ H Sbjct: 1 MAFALRPYQAKLITDTRDALREAKS-VLVQLPTGGGKTAIAAYMAGSAAKRKKRVVFGCH 59 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +EL+ Q +Q +G+ + AA + + S+ ++A+ LD + L + D Sbjct: 60 RRELIKQTMKTFQKVGIPFGVIAADFT-PDPRQPIQIASIPTLAKRLDRYPAP-DLYVPD 117 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H G + + +++ + + +GL+ATP RL + ++ + MV G A Sbjct: 118 EAHHAG---AATWAEVIDSFARRG--TKTVGLSATPERLDGTGLGRW-FDTMVYGPSTA- 170 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 ++I++G+L+P RL P D + ++ ++ G F++A L E I Sbjct: 171 -----------WLIENGFLSP-YRLFAPGT-IDVTGIK-RTAGDFNKAALE-ERASTSAI 215 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFK 297 T + + FA R+ M+F +++H+ +V A D RD LI F+ Sbjct: 216 TGNAVEHYARFARGRR-AMVFCVSIKHSMSVVERFQAAGFRAAHIDGKSENRDELIAAFE 274 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + + L +V +++ GFD P ++ +LRPT+S++LY Q VGR LR PGKT+ +ILD+A Sbjct: 275 TGQIQILCSVDLVSEGFDLPALECAILLRPTQSLALYLQQVGRALRTHPGKTEAIILDHA 334 Query: 358 GN 359 GN Sbjct: 335 GN 336 >UniRef50_C6NXH3 Type III restriction protein res subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXH3_9GAMM Length = 699 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 189/364 (51%), Gaps = 26/364 (7%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-----RLARGRVLVLAHVK 59 LRPYQ++AV A L R P V V+PTG GK++V+ EL+ + + +L+LAH Sbjct: 2 LRPYQEQAVSALLADARTGICP-VGVIPTGGGKTVVMRELSSRWLRQSPQDYLLLLAHRT 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 L+ Q ++ + ++ GL + G V S+Q++A + +SL++VDE Sbjct: 61 RLLTQAQERFAGVPVQVVSAGLGLFERPQPGTVTVASIQTLAGMPEIRDVPWSLVLVDEA 120 Query: 120 HRIG-DDEES-QYQQILTHLT-KVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 HR+G D+EES QY+ L L + +P + +G+TATP+R+ KG + H + G E + Sbjct: 121 HRVGMDNEESGQYRTFLDALAARSDPPI--VGMTATPWRIEKG-----NRHVPIFG-EGS 172 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQ-SNGLFSEADLNRELKKQQ 235 +F+ + +I G+L P + V++ Q +G + A++ K Sbjct: 173 IFQKASCWIHPDELIAQGFLLSP---TLATVRHPLPATGVQLPHGEIATANVTDYKKTDF 229 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLI 293 + I +++ R V++FA ++ + I L E A ++ G+ P + R+ I Sbjct: 230 ALR---IDEMVRLTQDRHRVLVFAESLSESAAIAKALELLGESACVLHGEHPESVRNREI 286 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 E F+A F+YLVNV V T G D P +D + + R T+SV Y Q+ GRGLR DCLI Sbjct: 287 EKFRAGDFKYLVNVDVFTEGLDVPEIDAVVLHRRTQSVVRYLQMAGRGLRPGGRGADCLI 346 Query: 354 LDYA 357 +D+ Sbjct: 347 VDFG 350 >UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WVJ5_ALIAD Length = 607 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 121/379 (31%), Positives = 174/379 (45%), Gaps = 49/379 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTP-AVIVLPTGAGKSLVIAELA--RLARGRVLVLAHVK 59 LR YQ EAVDA RR+ P V+V TGAGK+++ ++ A RL RG VL LAH Sbjct: 12 LKLRDYQVEAVDA----IRRYPKPRPVLVAATGAGKTVISSQFAVERLERGPVLFLAHRD 67 Query: 60 ELVAQNHAKYQAL-------GLEADIFAAGLKRKESHGKVVFGSVQSVAR-----NLDAF 107 EL+ Q K+ + G E I + SVQ++++ A Sbjct: 68 ELLDQTLDKFSVVFDALAEKGREVKIGRIQGPDDDVEADFAVASVQTISQPERLERWMAA 127 Query: 108 QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 +I DECH + L L V LGLTATP+R K Sbjct: 128 HETTPTVITDECHHATARTYMRIYHALGFLGSVPEGHVHLGLTATPYRTDKA-------- 179 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL-FSEAD 226 D + ++ Y + + +I G+L PP+ + + +V+ L+ + +G +S+A+ Sbjct: 180 -----DLRKVYDGVAYAIGIHDLIDMGWLVPPKSVKLEIVE----GLEGKDDGADWSDAE 230 Query: 227 LNRELKKQQRITPHIISQIM---EFAATRKGVMIFAATVEHAKEIVGLLPAEDA--ALIT 281 + + TP + QI+ + A+ + + F A+VEHA + A++ Sbjct: 231 VEGAVD-----TPSVNKQIVAAWQAQASDRLTIAFCASVEHAYHLAEEFEKAGVPVAVVH 285 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G P ER ++ F R L N VLT GFD P V I + RPT S SLY Q VGRG Sbjct: 286 GALPKEERRQTLDAFSDGNIRVLCNYGVLTEGFDRPEVSCIIMARPTLSHSLYVQCVGRG 345 Query: 342 LRLAPG--KTDCLILDYAG 358 LR+AP K DCL+LD G Sbjct: 346 LRIAPHIFKQDCLVLDVVG 364 >UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus elongatus RepID=Q31QB2_SYNE7 Length = 469 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 123/407 (30%), Positives = 202/407 (49%), Gaps = 52/407 (12%) Query: 3 FTLRPYQQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 F LR YQQ+ V+ + + H++P ++ +PTGAGK+ V + ++ + + R L+L H Sbjct: 4 FELRDYQQQVVEELRHSYATGHRSP-LVAMPTGAGKTAVFSYISLQSAAKQKRTLILVHR 62 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KEL+ Q LG+ + A+G +V SVQ++ R LD E L++VDE Sbjct: 63 KELLLQASRSLDRLGVRHGLIASGFSWMPYPTQV--ASVQTLVRRLDRLDWEPELIVVDE 120 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKAL 177 H + D + + ++L+ P R+LG+TATP R G+G GD + Sbjct: 121 AHHVVPD--NTWGKVLS----AYPRSRVLGVTATPCRTDGRGL-----------GD---V 160 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F D I + + + G+L P ++ P +Q D + ++ ++ G +++ L + + K Sbjct: 161 FDDLIIGPTIAELTERGFLCP-TKIYAPPIQADLTGVRMRA-GDYAKDQLAQAMDK---- 214 Query: 238 TPHIISQIME-FAATRKGV--MIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVL 292 P I+ ++ + GV + F A+VE A+++ + AA + G A R L Sbjct: 215 -PVIVGDAIDHYRRLCPGVPAIGFCASVEIAQKVAVEFSSAGFKAASLDGTLDSATRSHL 273 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 I++ + R + L + +++ G D P V +LRPT+S+ LY Q VGR LR APGK+ L Sbjct: 274 IDDLGSGRIQVLTSCEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLRPAPGKSHAL 333 Query: 353 ILDYAGNPHDLYAPEVG-----------TPKGKSDNVPVQVF-CPAC 387 ILD+ GN PE + KG+S+ P V CP C Sbjct: 334 ILDHVGNVMRHGLPEADREWTLEGEKRRSRKGESEEKPETVRQCPKC 380 >UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTX7_MONBE Length = 457 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 117/380 (30%), Positives = 186/380 (48%), Gaps = 48/380 (12%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-ARL-----ARGRVLVLAH 57 TL +Q + ++ +L F +H AV +PTG+GK++V + L ARL ++ +VLVLAH Sbjct: 66 TLYQHQTDCIEQSLTAFGQHDRVAV-SMPTGSGKTVVFSHLLARLPAPTPSQHKVLVLAH 124 Query: 58 VKELVAQNHAKYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQ-GE 110 EL+AQ + +A L DI V+ SV ++ R L F E Sbjct: 125 RTELLAQAKRQIEAHNPNLRVDIEGGHAHADVDAADVIVASVPTLGRPSSVRLSRFDPAE 184 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHL---TKVNPH-LRLLGLTATPFRLGKGWIYQFHY 166 F L+I+DE H S Y++IL H + NP+ ++L G +AT R + Sbjct: 185 FKLIIIDEAHHAA---ASTYKRILHHFFDENRSNPYDVKLWGCSATLQR----------H 231 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV-VQYDFSRLQAQSNGLFSEA 225 G+ D +F Y + L ++ G+L P + + V ++ D R++ G + A Sbjct: 232 DGLGLDD---VFDTIAYSVSLETLLDEGFLAPVRGMKVDVDLKLDQVRIR---KGEYDPA 285 Query: 226 DLNRELKKQQRITPHIISQIMEFAAT-RKGVMIFAATVEHAKEI-----VGLLPAEDAAL 279 +L+R + + ++ Q + R+ ++F + H ++ G + AE Sbjct: 286 ELSRLVNTNAQ-NELVVEQWRRYCQNERRSTLVFGVDIRHVLDLQEQFKSGGVQAES--- 341 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 IT TP AER +++ F F L+N VLT G D P VD + + RPT S +L+ Q++G Sbjct: 342 ITSLTPNAERKRILQAFSDGEFPVLLNCTVLTEGTDLPCVDALIMARPTRSHTLFVQMLG 401 Query: 340 RGLRLAPGKTDCLILDYAGN 359 RGLRL P K DCL++D A Sbjct: 402 RGLRLHPDKKDCLVIDVANT 421 >UniRef50_Q45PU5 JK_72P n=1 Tax=Enterobacteria phage JK06 RepID=Q45PU5_9CAUD Length = 546 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/398 (27%), Positives = 180/398 (45%), Gaps = 52/398 (13%) Query: 7 PYQQEAV--DATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVKEL 61 PY + V + R++ P + + AGK+LV +A+ +LVLA EL Sbjct: 52 PYSYQCVMYNEIAKRISRYEHPFIAMASVSAGKTLVFGMVAKRCSELGLPMLVLARQAEL 111 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEF--SLLIVDEC 119 V+QN ++ G+ I+ +GL K S+ VV GS +V L+ G+F +++ +DEC Sbjct: 112 VSQNASEISDYGVPNSIYCSGLGIKSSYFPVVVGSEGTVVGGLERSLGDFCPAVVAIDEC 171 Query: 120 HRIGDDE------------------ESQYQQILTHL-----TKVNPHLRLLGLTATPFRL 156 H + D + SQY I+ L K +LR+ GLT +PFR Sbjct: 172 HHVDDQDVAEALDNNETAQQASDKGRSQYTVIILTLMERCRAKYGKNLRIFGLTGSPFRG 231 Query: 157 GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA 216 + + E +R+ + + Y+++ G + P V YD S A Sbjct: 232 TTPIVVE-------NKKELGFWRETVTNIDTNYLVEFGSVVPTNFGATDGVGYDLSEFDA 284 Query: 217 QS-NGL--FSEADL---NRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG 270 S +G+ +++A L +++++ +T I+ ++ A R GV++ A H E Sbjct: 285 SSEDGVQDYTKAQLEAMDKKIQASGTMTAEIMKKVWLAAKDRNGVLVTCAGERHCHEAAS 344 Query: 271 LLP-AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTE 329 LP E +ITG T +R L++ + +Y V LTTG + P D ILR Sbjct: 345 YLPEGEKFCIITGKTGEKQRKELLDKCFSGEIKYCFQVQALTTGVNVPTWDTSVILRKIG 404 Query: 330 SVSLYQQIVGRGLRLAPG--------KTDCLILDYAGN 359 S++L Q++GRG+R K D L+LD+AG Sbjct: 405 SLTLLVQLLGRGMRKLKKLHEDKGMVKNDHLVLDFAGT 442 >UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q6C2M8_YARLI Length = 695 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 177/390 (45%), Gaps = 43/390 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLAHVK 59 LR YQ+E + A L+ K + L TG GK+++ A L A+ +VL+L H K Sbjct: 29 LRKYQKECISACLDALNAGKRRIAVSLATGGGKTVIFANLLNQIAAKNTGNKVLILTHRK 88 Query: 60 ELV--AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAFQ-GEFSLLI 115 EL AQN L+ +I G + VV VQ++ + L+ +F +I Sbjct: 89 ELATQAQNQISRFNPDLKVEI-EMGTTVADPSADVVVAGVQTLQGKRLEQLDPTDFKAII 147 Query: 116 VDECHRIGDDEESQYQQILTHL--TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DE H Y I+ H +K + ++G TAT FR D Sbjct: 148 IDEAHHAA---SQSYLNIIQHFKASKAKSDVAVIGFTATLFRT----------------D 188 Query: 174 EKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 K+L F +Y+L MI G+L+ + + D + ++ + G F + L++ Sbjct: 189 TKSLTKAFDHVVYDLSFMDMINDGWLSSV-KFSTVISMADLTEVEIGAAGDFKTSSLSKV 247 Query: 231 LKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPG 286 + R+ + A K ++F V+H +++V L ++ +A +TG T Sbjct: 248 VN-TDRMNSLVFRTWQNMTAKHGYKSTIVFCVDVQHVRDLVELFRSQGINAEGVTGTTKP 306 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 R +I+ FK+ L N V T G D P++DL+ + RPT+S L Q++GRGLRL P Sbjct: 307 KTRQAIIDEFKSGDIPVLFNCGVFTEGTDIPNIDLVILNRPTKSKGLMMQMIGRGLRLHP 366 Query: 347 GKTDCLILDYAGN-PHDLY-APE-VGTPKG 373 GK ++D G P + AP +G P G Sbjct: 367 GKDHTAVVDLVGTVPAGMVTAPSLLGLPSG 396 >UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DU02_LODEL Length = 760 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 177/381 (46%), Gaps = 42/381 (11%) Query: 3 FTLRPYQQEAVDAT-LNHFRRHKTPAVIVLPTGAGKSLVIAELAR--------------L 47 F LR YQ +A++A L + + PAV+V TG GK+++ + L R Sbjct: 130 FKLRDYQVQAIEAIKLALDQGIRRPAVVV-ATGGGKTVIFSNLIRELLDMLRTETTKSQS 188 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNL 104 R+LVLAH +EL+ Q K +A+ E ++ R + VV SV S+ R L Sbjct: 189 QNKRILVLAHTEELIKQAVQKIKAINPELNVRIEMRSARSKDTDDVVVASVMSIKHPRRL 248 Query: 105 DAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKV--NPHLRLLGLTATPFRLGKGWI 161 F F+ +I+DECH + YQ+IL H + + HL ++G TAT R K + Sbjct: 249 ARFDPAHFTSIIIDECHHA---PAATYQKILNHFGALLHDLHLSVIGFTATLSRFDKRSL 305 Query: 162 YQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL 221 +F +++ L MI+ G L P V + ++ Q + Sbjct: 306 -------------GVIFDKVVFQRSLLTMIEAGELVKPVIHRPLVANLNLESVKRQGSDY 352 Query: 222 FSEADLNRELKKQQRITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGLLPAE--DAA 278 +E +L + ++S + T K +IF V+H E+ L + +A Sbjct: 353 DTE-NLYNAMSAVGFNDKAVLSYMRLVEQTACKSTLIFCVNVQHCWELCSTLQSHGINAQ 411 Query: 279 LITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 +TG+T +ER ++E+FK + L NV V T G D P++D I + RPT S +L Q + Sbjct: 412 YVTGETSKSERAAIVEDFKLGKIPVLCNVEVFTEGTDIPNIDSIILARPTLSRTLVTQSI 471 Query: 339 GRGLRLAPGKTDCLILDYAGN 359 GRGLRL KT C ++D N Sbjct: 472 GRGLRLHKNKTCCHVVDLVDN 492 >UniRef50_Q6J7X8 Pas53 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q6J7X8_9CAUD Length = 567 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 129/410 (31%), Positives = 184/410 (44%), Gaps = 39/410 (9%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAE--LARLARGRVLVLAHVK 59 + LRPYQ++A++ R ++VLPTG GK++V + R RGR LVL H Sbjct: 1 MLGLRPYQEKALEGIEKAEREGVRRPLVVLPTGTGKTVVFSHGIKNRADRGRSLVLVHRD 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHG---KVVFGSVQS--VARNLD-----AFQG 109 ELV Q K +G+ A G+ + + +G VV SVQ+ V R L A + Sbjct: 61 ELVRQTIEK---IGMVAPELTTGVVKADENGLDADVVVASVQTAQVDRRLAQLVEAAKRS 117 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL-LGLTATPFRLGKGWIYQFHYHG 168 F + VDE H + ++LT L NP+ L +G TATP R K Sbjct: 118 PFGTVWVDEAHHA---PAPSWTKVLTGLGSFNPYGPLTVGFTATPERDKKTLGVWERLAA 174 Query: 169 MVRGDEKALFRDCIYELPLRYMIKH--GYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 + R+ IY R H GYL P + + D +R++ ++ G FSE D Sbjct: 175 FMS------IREAIYGNGKRGKDGHEGGYLVPILPAVVVETEMDLTRVR-KTGGDFSEGD 227 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDT 284 L RE+++ I I + A RKGV F TV A + L A + G T Sbjct: 228 LGREMEESGAIA-QIADAYLINAHDRKGVA-FTPTVATAHALAAALCARGIRTEALDGTT 285 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ER ++ K + + N VLT GFD P + + + RPT+ LY Q++GRG RL Sbjct: 286 HKDERRAILRRLKTGETQVVTNCGVLTEGFDEPSISCVVVARPTKFHGLYVQMIGRGTRL 345 Query: 345 APGKTDCLILDY--AGNPHDLY-----APEVGTPKGKSDNVPVQVFCPAC 387 PGK D +ILD A H+ ++ K + P + CP C Sbjct: 346 YPGKKDLMILDLVAASRRHEFVGYVDLGLDLDEGKKPKEGEPERQACPTC 395 >UniRef50_B1XQS3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQS3_SYNP2 Length = 471 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 110/376 (29%), Positives = 176/376 (46%), Gaps = 57/376 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARGR-VLVLAHVK 59 F LRPYQ + V L +H + V LPTG GK+++++ +A + RG VL+L+H Sbjct: 4 FQLRPYQAQMVSEILGSLAQHDS-VVGQLPTGGGKTIILSAIANEFIKRGSPVLLLSHRD 62 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVD 117 ELV Q K A+ G I AG + SVQS+ R L + + F +IVD Sbjct: 63 ELVNQGADKLAAVSGQPVGIIKAGYPDNGDR-LIQSASVQSLVRRLHKYSPDRFGAIIVD 121 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 ECH + Y++IL H K +LG TATP RGD L Sbjct: 122 ECHHT---TANTYRKILDHFEKAY----VLGFTATP----------------CRGDGAGL 158 Query: 178 ---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR----- 229 F + ++ +I+ G+L+ + L A+ + + A + R Sbjct: 159 DDLFSHMVTGPTIKQLIEVGHLS------------RYRYLAAEKSMVVKGAKVRRGDYTS 206 Query: 230 ----ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGD 283 L + ++ ++S + + ++FA +++K + A I G+ Sbjct: 207 KSLAALNPRDQLAADLVSSYFQHCDGMR-CLVFAIDRDYSKATAAMYQAHGVPAIHLDGE 265 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 TP R +E F+A + + NV + T G D P V+ + + RPT+S+ L+QQ+ GR LR Sbjct: 266 TPQHIRKAALEAFQAGEIKVVCNVGLFTEGTDLPAVEALQMARPTKSLGLFQQMTGRVLR 325 Query: 344 LAPGKTDCLILDYAGN 359 +APGK++ +I+D+AGN Sbjct: 326 VAPGKSEAIIIDHAGN 341 >UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6BK09_DEBHA Length = 704 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 112/377 (29%), Positives = 175/377 (46%), Gaps = 48/377 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-------GRVLVLAH 57 LR YQ EA+ + N R + +VL TG GK++V + L + + LVLAH Sbjct: 40 LRDYQVEAIKSVHNAISRGINRSAVVLATGGGKTVVFSHLISQIKPSTPDRGNKTLVLAH 99 Query: 58 VKELVAQNHAKYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFS 112 +ELV Q + L+ DI LK S+ V+ SV ++ R L + EF Sbjct: 100 KEELVRQAADSIAEINPNLKVDIDMRKLK-PSSNADVIVASVPTLIRMSRLSKYDPKEFK 158 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPH--LRLLGLTATPFRLGKGWIYQFHYHGMV 170 +I+DECH + + +IL + P + ++G TAT M Sbjct: 159 TIILDECHHAPAN---SWSKILQYFEAHTPQSQIYVIGFTAT----------------ME 199 Query: 171 RGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN----GLFS 223 R D K+L F + ++E L M+++ L R V D +++ + N S Sbjct: 200 RSDGKSLAEIFDEIVFERNLLEMVQNKELADV-RFSSIDVDVDLTKVATKKNDYEINSLS 258 Query: 224 EADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALIT 281 +A + E+ ++ + + F +T +IF + H K + G+ E +A +T Sbjct: 259 QAMNDSEVNLLVALSYSQLQKEFNFKST----LIFCVDISHCKTLCGVFQREGINAQYVT 314 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G+T ER +IE+FK L NV V T G D P++D + + RPT+S L Q++GRG Sbjct: 315 GETAKHERQAIIEDFKKGIIEVLCNVQVFTEGTDIPNIDSLFLARPTKSRPLLVQMIGRG 374 Query: 342 LRLAPGKTDCLILDYAG 358 LRL KT C ++D AG Sbjct: 375 LRLHKSKTHCHVVDIAG 391 >UniRef50_B1GS37 Putative ATP-dependent helicase n=1 Tax=Salmonella phage Vi II-E1 RepID=B1GS37_9CAUD Length = 644 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 126/506 (24%), Positives = 214/506 (42%), Gaps = 88/506 (17%) Query: 17 LNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRV---LVLAHVKELVAQNHAKYQALG 73 + +F + P+ + +GK+++I+ L + LV++ E+ QN Sbjct: 42 IRNFGKKPEPSYVTASVSSGKTVMISMLCSRFQDMGWDGLVISRQGEIAEQNAEMMWECS 101 Query: 74 LEADIFAAGLKRKESHGKVVFGSVQSVARNL---------DAFQGEFS-----LLIVDEC 119 ++ +++A L RK + ++ G+ ++ L D +G S + DE Sbjct: 102 VKNSLYSASLGRKSTAYPIICGTEGTIVNALFDKKDESSGDVKKGGLSDFAPRFCLCDEG 161 Query: 120 HR------IGDDEESQYQQILTHLT-----KVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 H+ I ++ +QY ILT L K + +G T +PFR + Sbjct: 162 HQVPWQDIISENPTTQYGVILTELNRRCKAKHGHEMITIGFTGSPFRGTES--------- 212 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPP--ERLDMPVVQYDFSRLQAQS-NGL--FS 223 ++G A +++ I + +YM+ G++ P D+ + YD S + +G F+ Sbjct: 213 -MKG---AYWKNEIINIDTKYMVDRGFVVPTIFGLHDVDDLHYDLSAFRGSDIDGTQDFT 268 Query: 224 EADLNR---ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI 280 L + E+ +Q +T I+ ++ME R GV+I A +H +E LP A++ Sbjct: 269 AEQLKQMQEEILEQGTLTQKIMLKVMELTKNRNGVLITCAGKKHCQEAAKYLPEGSYAIV 328 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 T D R +++ + +Y +A LTTG + P D ILR S++L Q++GR Sbjct: 329 TEDMGQKARRKALKDAYTGKIKYTFQIAALTTGVNIPLWDTSVILRKIMSLTLLVQLLGR 388 Query: 341 GLRLAPG--------KTDCLILDYAGNPHD---LYAPEV--GTPKGKSDNVPVQVFCPAC 387 G+RL K D L+LD++G + LY + +S QV CP C Sbjct: 389 GMRLLKKEQIDAGYHKEDHLVLDFSGAMFELGQLYEDPILEEAEAQRSKRSGEQVPCPKC 448 Query: 388 GFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNC-----------PQ 436 G N+ + RRC G +D +C+ F + C Sbjct: 449 GTMNS-------------PYARRCIG--KDALSPDGRCEEFFSYIRCGFDKHGIRIFDDG 493 Query: 437 CNAENDIAARRCRECDTVLVDPDDML 462 C +ND AR CR CD VL DP+ L Sbjct: 494 CGTKNDPTARYCRHCDHVLRDPNAAL 519 >UniRef50_C0A6N5 DNA/RNA helicase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N5_9BACT Length = 526 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 115/354 (32%), Positives = 171/354 (48%), Gaps = 42/354 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR--GRVLVLAHVKELV 62 LRPYQ E V A L + V TGAGK+++ E+ RL G VL LA K+LV Sbjct: 18 LRPYQTEFVSAALASLIEFDR-VLGVAATGAGKTVMAGEITRLTLPLGPVLFLADAKQLV 76 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHG----KVVFGSVQSVARNLDAF-QGEFSLLIVD 117 Q E A ++ +SH ++V + QS+AR L + Q F L+IVD Sbjct: 77 WQAAKSLTNWTGEP----AAVEMADSHAQLGDRIVVATTQSIARRLKGWPQNYFYLVIVD 132 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E HR + Q Q +L H T + LG+TATPFR K + + Y + Sbjct: 133 EAHR--NTLGGQAQSVLPHFTTA----QTLGITATPFRSDKQELGNY-YQAIA------- 178 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 DC + L +I G+L+ +P + DF++++ G F++ DL L Sbjct: 179 --DC--DAGLIRLINEGWLSRITIKSVPAPEIDFTKIRT-VKGDFADTDLGAALN----- 228 Query: 238 TPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 PHI +++I+ A + + F E ++ V A + D G +R L + Sbjct: 229 -PHIDTLARIVAEHARDRRTVAFLPLRETSRNFVAACNAIGLRAVHAD--GEDRAGL-DA 284 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 F + + + N ++LTTG+D P VD ++I RPT+S LY Q+VGRG R+ PGKT Sbjct: 285 FARRDYDIISNASLLTTGWDQPDVDCVSIFRPTKSFVLYSQMVGRGTRIHPGKT 338 >UniRef50_B1MAA8 Type III restriction protein res subunit n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1MAA8_METRJ Length = 462 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 115/370 (31%), Positives = 167/370 (45%), Gaps = 47/370 (12%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL--ARLARG-RVLVLAHV 58 + LR YQ AV + ++VLPTG GK++V + A ARG RV+VL H Sbjct: 1 MIQLRDYQSAAVARIREAYAERSRRILLVLPTGGGKTIVFCWIGAAVAARGKRVVVLVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 EL+ Q +G+E + AAG E+ V SV ++AR L A L+++DE Sbjct: 61 AELLEQVSKALAGMGVEHGLIAAGHPTTEA--AVQVASVATLARRLAAGFAPPDLIVIDE 118 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKAL 177 H + P +LG++ATP RL G+G F MV G A Sbjct: 119 AHH-------AVAGTWNRVIDAAPESFVLGVSATPARLDGRGLGSAFDV--MVEGPTVAE 169 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVV-----QYDFSRL-QAQSNG-LFSEADLNRE 230 + +P R PPERLD+ + +YD +L +A + G L +A Sbjct: 170 LTAAGHLVPARV------FAPPERLDLSKIKVRAGEYDARQLAEAMAGGTLIGDA----- 218 Query: 231 LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 ++ AA R V F A++EH++ + AA + G T AE Sbjct: 219 -----------VAHYRRLAAGRPAVA-FCASIEHSQIVAARFRGAGVAAAHVDGKTDAAE 266 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R LI R L NV ++ G D P + + +LRPT S + Y Q VGR LR + GK Sbjct: 267 RRRLIAGLGTGELRVLTNVDLIGEGVDVPAIGAVILLRPTRSEARYLQSVGRALRPSAGK 326 Query: 349 TDCLILDYAG 358 ++ ++LD+AG Sbjct: 327 SEAIVLDHAG 336 >UniRef50_B5U5V9 Gp54 n=8 Tax=unclassified Siphoviridae RepID=B5U5V9_9CAUD Length = 598 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 171/371 (46%), Gaps = 32/371 (8%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVKEL 61 LRPYQ+EAV+A +H+ + T +VLPTG GKS VI A R VL++AH EL Sbjct: 40 LRPYQREAVEAIESHWSQGVTRVGVVLPTGTGKSTVIGRTAVNGYQNREPVLMVAHRGEL 99 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKES---HGKVVFGSVQSVA----RNLDAFQGEFSLL 114 + Q + G+ R E +V ++Q++A R F+ + Sbjct: 100 IDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAVGFRRR---I 156 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 + DE H G + + T L L G TAT R KG + GD Sbjct: 157 LWDEVHHAGAE---GFHTTFTELGGYTDAL-FAGFTATMRRDDKG------KSPVGLGD- 205 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 + +YE + + I GYL P L + + + G F ++DL ++ Sbjct: 206 --VIEKVVYEKDILWAIDSGYLVRPRGLTVRIKNLNALDDVRTVAGDFQQSDLAEVMEAA 263 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 T +++ I AA R+ + IFAA+V+ A I L A D A +TG AER + Sbjct: 264 ---TEYVVDAIKLHAADRRPI-IFAASVDAAHHIADALTAADFPAVAVTGSMSYAERQPV 319 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 E ++ + LV V VLT G D P D + + RPT S +LY Q++GR LRL GK D L Sbjct: 320 YEAYRNGTAKALVTVQVLTEGADFPMCDCVVLARPTRSRNLYSQMIGRALRLYDGKQDAL 379 Query: 353 ILDYAGNPHDL 363 +LD AG+ + Sbjct: 380 VLDLAGSSRSM 390 >UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PUJ3_MALGO Length = 667 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 169/374 (45%), Gaps = 25/374 (6%) Query: 5 LRPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV- 62 LRPYQQE VDA ++ R+H T + PTG+GK+ + EL R +H LV Sbjct: 40 LRPYQQECVDACIDALERKHLTRIGVSAPTGSGKTTMFLELVSRIFSREANTSHALILVN 99 Query: 63 -------AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQ-GEFS 112 A AK + D+ + +VQ++ + L + +F Sbjct: 100 GITLAQQAAERAKRMFPHMTVDMDQGARHVASGEADITVATVQTLRQPKRLAKYNPHKFK 159 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH-GMVR 171 +IVDE H Y +L+H K G T G+ F H G+ Sbjct: 160 CVIVDEAHH---STSPSYLSVLSHFHKAIVPSNKHGSTTDATTPIIGFSATFTRHDGVAL 216 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 G +F + ++ MI +L P R + +D S++ S+ + + L + Sbjct: 217 G---LVFEEIVFHKDFLDMIDEQWLCP-VRFTLIRADFDLSKVSTTSSD-YVVSSLAHVV 271 Query: 232 KKQQRITPHIISQIMEFA-ATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAE 288 + + ++ M+ A ATR+ ++FA V H +V DA I E Sbjct: 272 NRPD-VNELVVRSWMDLAGATRQSTLVFAVDVAHVHALVKEFQVRGIDARGIHASMRLTE 330 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R+ L+ +F+ F L+N A+LT G D P +D + ++RPT+S +L+ Q++GRG+R + GK Sbjct: 331 RESLLASFQRADFPVLINCAILTEGADMPGIDCVLLMRPTKSRNLFAQMIGRGMRKSAGK 390 Query: 349 TDCLILDYAGNPHD 362 +DCLILD GN H+ Sbjct: 391 SDCLILDVVGNAHN 404 >UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R463_PICPG Length = 682 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 110/388 (28%), Positives = 177/388 (45%), Gaps = 54/388 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL------ARLARGRVLVLAHV 58 LRPYQ++ +++ + R +T + L TG GK+++ + L + + L+L H Sbjct: 60 LRPYQKDCIESIMKVIRGGETRLAVSLATGGGKTVIFSNLLNEIPSNKYNGQKTLILVHR 119 Query: 59 KELVAQNHAKYQAL--GLEADIFAAGLK-RKESHGKVVFGSVQSVARN-------LDAFQ 108 KEL Q + ++ +I AGL+ + VV SV ++ARN D Sbjct: 120 KELADQAARTIKRFFPHMKIEIDMAGLRPTHDDDVDVVVASVPTLARNNSKNPRLFDYDP 179 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPH-LRLLGLTATPFRLGKGWIYQFHYH 167 EF +I+DECH D + Q L+K + + ++G +AT Sbjct: 180 NEFKAIIIDECHHAISDSYIKILQYFNALSKDSSDGIIVVGFSAT--------------- 224 Query: 168 GMVRGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS--RLQAQSNGLF 222 + R D + L F YE L M+K GYL+ L + V+ FS ++ G + Sbjct: 225 -LKRHDAQPLDKVFNTIAYEKDLISMVKEGYLS---ELSITKVEGAFSLDDVKLDKTGDY 280 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRKGVM------IFAATVEHAKEIVGLLPAE- 275 L + T + +++ RK V+ F +H +++ L A Sbjct: 281 QLQSLESSVN-----TAAVAELVLKTYLERKKVLGLKSSLFFCVNKQHVQDLCELFCANG 335 Query: 276 -DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 A ++G+TP ER+ +I+NF + L+N V T G D P++D I +LRPT+S L Sbjct: 336 IKAGFVSGNTPLLEREQIIKNFIDGKLNVLMNCNVFTEGTDIPNIDSIFLLRPTKSRPLL 395 Query: 335 QQIVGRGLRLAPGKTDCLILDYAGNPHD 362 Q++GRGLRL GKT C + D+ G H Sbjct: 396 SQMIGRGLRLHSGKTKCYVTDFVGTTHS 423 >UniRef50_C2FEA8 Helicase n=4 Tax=Bacilli RepID=C2FEA8_LACPA Length = 458 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 116/420 (27%), Positives = 185/420 (44%), Gaps = 72/420 (17%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L PYQ+E V+ ++V P G+GKS++IAE+ARLA G V+ H Sbjct: 1 MFQLHPYQKELVNQAREKLADGHKSVLLVSPAGSGKSVIIAEIARLAVMKGGHVMFTVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KEL+ Q + A G++ K +V +AR L + +L+I DE Sbjct: 61 KELIDQITKTFIANGVDL-------------SKCTIMTVGRIARRLGKLP-KPNLIITDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKAL 177 H + + + + LG +A+P+RL GKG Y MV G Sbjct: 107 THH-------SLAKTYLKIYEFYKDIPRLGFSASPWRLSGKG--LGDVYETMVEGPT--- 154 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 ++++I+H YL P + ++ D +L+ S G +S ++ K I Sbjct: 155 ---------VKWLIEHHYLAPFDYYAPTLI--DVEKLKKSSTGDYSTKSIDEANTKM--I 201 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGD--TPGAERDVLIEN 295 ++S + A R+ + ++A ++E +K + A + I D TP RD + Sbjct: 202 FGDVVSHYQKLANGRQAI-VYAHSIEESKRVAATFNAAGISAIHVDSKTPALNRDEAMTA 260 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 FK + R + NV +++ GFD P ++ +LRPT S+ L Q RG+R P K +I+D Sbjct: 261 FKDGKIRIISNVDLISEGFDVPECGVVIMLRPTASLVLDIQQSMRGMRYRPNKR-AIIID 319 Query: 356 YAGNPHDLYAPEV-------GTPK-----GKSDN------------VPVQVF-CPACGFA 390 + N + P+ PK GKSD VP QV CP CG++ Sbjct: 320 HVANVYRFGLPDTDREWSLEDRPKQEKHRGKSDGPAIKSCPKCFGIVPAQVKQCPLCGYS 379 >UniRef50_C0A3V9 DNA or RNA helicase of superfamily II-like protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3V9_9BACT Length = 687 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 122/397 (30%), Positives = 190/397 (47%), Gaps = 62/397 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAHVK 59 +T R YQ A DA ++H H +IVL TG GK+++ A + G VL++AH + Sbjct: 55 WTYRDYQLAAFDA-IDHGFAHVQRILIVLATGLGKTVIFTRTAGIFVKNHGHVLIIAHSE 113 Query: 60 ELVAQNHAKY-QALGLEADIFAAGLKRKESHGK----VVFGSVQSVARN--LDAFQGE-F 111 EL+ Q K ++ GLEA ++ E H VV SVQ+++R L ++ + F Sbjct: 114 ELLDQAADKLLKSTGLEA-----AKEKAEHHATTYDPVVIASVQTLSRETRLKSWPPDHF 168 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 SL+I+DECHR Y+ IL H R+LG+TATP R K + + Sbjct: 169 SLIIIDECHR---SMAKSYRAILDHFATA----RVLGVTATPDRGDKRALSPIFQPVPIT 221 Query: 172 -----GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 G+ YE L ++ G+L P +P+ + D + ++ + S+ D Sbjct: 222 TTGADGNTVTKLHPAAYEFNLLQAVRAGWLVRPVVKTLPL-EIDLNGIKTRRTSNGSDFD 280 Query: 227 LNRELKKQQRITPHI--ISQIMEFAA-TRKGVMIFAATVEHAKEIVGLLPAE--DAALIT 281 + RI P + I++++E TR +IF +V A+ + L A +A ++ Sbjct: 281 ---PTEVSHRIEPFLGEIARLIEIETRTRGQGLIFTPSVATARMMADALLAVGINAGYVS 337 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 GD P +R+ I N+K+ + R LVN +L GFD +D +++LRPT+ +LY Q VGRG Sbjct: 338 GDCP--DREAKIANYKSGQTRVLVNAMLLIEGFDHDAIDWVSVLRPTKVRALYVQAVGRG 395 Query: 342 LR-LAP---------------------GKTDCLILDY 356 R L+P K D LILD+ Sbjct: 396 TRPLSPLVHALNSAPDADTRRALIARSAKPDLLILDF 432 >UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B0CPP8_LACBS Length = 635 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 177/379 (46%), Gaps = 35/379 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARG-------RVLVLA 56 LRPYQ++ +DA L + + LPTG+GK+ V ++ L+RL R L++ Sbjct: 28 LRPYQEQCLDACLEALASGVSRIGVSLPTGSGKTTVFVSLLSRLVPSAWNPVATRSLIIV 87 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKES-HGKVVFGSVQSV--ARNLDAFQG-EF 111 + EL Q+ ++ +L + + G K K S V + Q++ A L F + Sbjct: 88 NSVELARQSASQVASLFPQWSVEIEQGAKYKASGFADVTIATYQTLKSAERLAKFDPHKL 147 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR----LLGLTATPFRLG-KGWIYQFHY 166 +IVDE H Y+++L H +P ++ L + P R+ G+ F Sbjct: 148 KAVIVDEAHHAA---APSYRKVLAHF---HPDIKHPDPLFAAPSPPHRIPIVGFSATFSR 201 Query: 167 H-GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS-NGLFSE 224 H G+ G ++F +Y MIK +L P R+ D + + G F+ Sbjct: 202 HDGLALG---SIFERIVYHRDFLEMIKEQWLCP-VRVTSVRASIDLKSVTINTRTGDFNP 257 Query: 225 ADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITG 282 L + + I ++ ++ A+TRK ++F V H + DA + Sbjct: 258 TSLAHVINTET-INELVVKTWIDRASTRKSTLVFCVNVAHVHTLTQSFRQFGVDARYLHA 316 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 TP AER L+ FKA F LVN A+LT G D P++D + I RPT S +++ Q++GRG+ Sbjct: 317 GTPIAERKALVAMFKAGHFPVLVNCAILTEGADIPNIDCVLIARPTRSRNVFAQMIGRGM 376 Query: 343 RLAPG--KTDCLILDYAGN 359 RL+P K DC I+D G+ Sbjct: 377 RLSPNTDKGDCHIIDLVGS 395 >UniRef50_Q597S9 Putative helicase n=1 Tax=Lactobacillus phage phiJL-1 RepID=Q597S9_9CAUD Length = 467 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/363 (28%), Positives = 167/363 (46%), Gaps = 48/363 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L YQQ VD T N R+ +IV P G+GKS++I E+ RL + RVL H Sbjct: 1 MFKLYDYQQRIVDETRNKLRQGNKGVLIVSPPGSGKSVIIGEITRLTTLKKNRVLFTVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 +ELV Q + A+G+ D +V V LD + + L+IVDE Sbjct: 61 QELVDQITDTFDAMGVNQDY-------------TTVMTVGRVKNRLDKLE-KPDLIIVDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 Y IL + + V P L G + +P+R+ G + Y MV G Sbjct: 107 SQHT---RAKTYTDILDYYSDV-PRL---GFSGSPWRMN-GQGFDDIYPAMVEGPSVKWL 158 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 D + P Y P+ L+ F + NG + + ++ L +I Sbjct: 159 IDNYHLAPFTYY-------APQTLE------GFKK----RNGEYDKKSVDEVLG--SKIF 199 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENF 296 +S + A ++ ++ +A +VE+AK+ +AA + G TP AERD +I +F Sbjct: 200 GDAVSSYLSNANGKQAIL-YAHSVEYAKKYAVAFEEAGVNAASVDGKTPKAERDRIINDF 258 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 ++ + + L N +++ GFD P+ +++ + RPT S+ LY Q R +R GK +I+D+ Sbjct: 259 RSGKLKVLCNNDLISEGFDVPNCEVVIMCRPTASLVLYLQQSMRCMRYVNGKQ-AMIIDH 317 Query: 357 AGN 359 GN Sbjct: 318 VGN 320 >UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MIT3_TALSN Length = 667 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 103/376 (27%), Positives = 175/376 (46%), Gaps = 53/376 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRV----------LV 54 LR YQ+E++ + L H + + L TG+GK+++ +L GRV L+ Sbjct: 61 LRDYQEESIQSVLEHLEKGHNRLGLSLATGSGKTVIFTQLI----GRVPPRNGGANQTLI 116 Query: 55 LAHVKELVAQ--NHAK--YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQ 108 +AH KELV Q H + Y +E ++ G + + S++S++ ++ F Sbjct: 117 IAHRKELVEQAARHCRLAYPDKSIEIEM---GANKASGAADITVASIRSLSSKDRIEKFD 173 Query: 109 GE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQF 164 F L++VDE H I QY+Q L++ + P L+G++AT FR Sbjct: 174 PSLFKLVLVDEAHHIV---APQYRQALSYFSLTKPSNNAPVLVGVSATFFR--------- 221 Query: 165 HYHGMVRG---DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL 221 + G+ G D +D I + +++ + T +D+ SR+ S+G Sbjct: 222 -FDGLKLGSAIDHIVYHKDYIDMIGEKWLSDAIFTTVKTHVDL-------SRVARDSSGD 273 Query: 222 FSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAAL 279 F+ L+ E + + + A+ R+ ++F +EH ++ DA Sbjct: 274 FATRALS-EAVNTATVNDVTVRSWLTHASDRRSTLVFCVDIEHVHQLTEAFRDNGIDARY 332 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 IT +TP R+ +E FK + L+N + T G D P++D + + RPT S SL Q++G Sbjct: 333 ITANTPRQTRNEELEAFKRGEYPVLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIG 392 Query: 340 RGLRLAPGKTDCLILD 355 RGLRL P K +C I+D Sbjct: 393 RGLRLHPEKENCHIID 408 >UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCA5_9ACTN Length = 984 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 114/380 (30%), Positives = 177/380 (46%), Gaps = 43/380 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q++A++A R A++V TG GK+ + A ++ A RVL LAH K ++ + A Sbjct: 245 QEKALEALAALHERRDPRALLVSATGTGKTYLSAFDVKAAAPVRVLFLAHRKRILTASMA 304 Query: 68 KYQALGLEADIFAAGLKRKESHGK---VVFGSVQSVARNLDAFQGE-FSLLIVDECHRIG 123 Y+ L D + GL R G F ++ LD E F +++DE HR+G Sbjct: 305 SYKKL--LGDNYTYGLYRAGGDGTEFTCTFAMCSTICGYLDKIDAELFDYIVIDEAHRVG 362 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI- 182 YQ+IL H P LG+TATP R G+ D ALF I Sbjct: 363 ---AKGYQRILEHF---KPKF-CLGMTATPNRT-DGY------------DVFALFNHVIA 402 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN-GLFSEADLNRELKKQQRITPHI 241 Y++ L+ ++ L P + + D + QS+ LFS+ L + R+ HI Sbjct: 403 YQITLQDALREDMLAPFHYFGIADLAID---EEEQSDFTLFSK------LTSEARVN-HI 452 Query: 242 ISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFK 297 I +I E++ + G ++F + +E A+E+ + I G+ AERD +I + Sbjct: 453 IDKIEEYSVKKDGRKGLVFCSRLEEARELAKQFTQRGYKSEAIDGNDSNAERDEVIRKLE 512 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + Y+ +V +L G D P V+ I +LR TES ++ Q +GRGLR A K L+LD+ Sbjct: 513 SGELEYIFSVNILNEGVDIPAVNQIIMLRRTESSIVFVQQLGRGLRKADNKESTLVLDFI 572 Query: 358 GNPHDLYAPEVGTPKGKSDN 377 GN + V K+ N Sbjct: 573 GNYQQNFLIPVALSGDKTYN 592 >UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YK43_ANASP Length = 681 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 118/435 (27%), Positives = 195/435 (44%), Gaps = 54/435 (12%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 I+ LR YQ + + N ++R + LPTGAGK++ A + + + +VLV+AH Sbjct: 7 IYELRNYQHQWIKDIWNSWKRGNRRVLAQLPTGAGKTICFAHICQKFFQKQQKVLVIAHR 66 Query: 59 KELVAQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVAR-NLDAFQGEFSLLIV 116 EL+ Q K Q +G I G ++ S+Q++AR ++ LL+ Sbjct: 67 IELITQAAEKLEQIVGEPVGIIKGGCA-AHPERRIQVASIQTLARRDILELPLNIGLLLF 125 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEK 175 DE H S Y++++ H + ++LG+TATP R+ G+G+ + Sbjct: 126 DEAHH---SSASSYRRLIEHYQEA----QILGVTATPQRIDGQGF--------------Q 164 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQ-SNGLFSEADLNRELKKQ 234 LF D + + +IK GYL+ + + S + + S G F +L + Q Sbjct: 165 ELFDDLVVGISTSTLIKEGYLS---KFRLFTTNQTISTIGVKKSRGDFRAKELAVAVTSQ 221 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVL 292 + I +++A + V IFA ++EH++ + A + G+TP R + Sbjct: 222 IGV-DEIFQNYLKYAKNLRTV-IFACSLEHSRALAAKFRRNGIKAEHLDGETPPELRVQI 279 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 +E F+ + + N +LT G+D P+++ I +RPTES +L+ Q+ GR LR K + Sbjct: 280 LERFRGGETQVITNYEILTEGYDCPNIECIYCVRPTESSTLWLQMTGRVLRTHTLKPTAV 339 Query: 353 ILDYAGN--PHDL------YAPEVGTPKGKSDNVPVQVFCPACGFA--------NTFWGK 396 I+D N H L ++ E T S +Q CP C A G+ Sbjct: 340 IIDVTDNWKKHGLPDEQRQWSLEAKTLTASSSLGLIQ--CPHCTHAFKPLSHELAIVDGE 397 Query: 397 TTADGTLIEHFGRRC 411 DG LIEH C Sbjct: 398 IGEDGLLIEHHEAIC 412 >UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XHM4_VIBHA Length = 551 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 172/363 (47%), Gaps = 37/363 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQQ V+++L + H + V TG GK+++++ +AR + LVL H EL+ Q Sbjct: 3 LRNYQQRFVNSSLEALKNHH-GVLGVGATGCGKTVMLSSVAREFKS-ALVLQHRTELLEQ 60 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGD 124 N + + K + FG VQ++AR +D +G + L+++DE H Sbjct: 61 NSKTFSWVNPALKYGLVDSKNNDWSKPYTFGMVQTIARRMDEIKG-YDLIVIDEAHHTAA 119 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + Q+ +I+ + NP +L G+TATP R K + +F + + Sbjct: 120 N---QHAEIIEAVRNSNPDAKLFGVTATPERADKKDLSKF-------------YETISDQ 163 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA-QSNGLFSEADLNRELKKQQRITPHIIS 243 + + +IK+G+L PP L + D +L+A + + EA LN + ++ +I Sbjct: 164 IKMNELIKNGFLVPP--LGYVIKVADSEQLKAAKDDDEKIEALLNLKATNER-----VIE 216 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRF 301 + + A R+ V IF T +HA ++ I G ER ++ + Sbjct: 217 EWRKIAGNRQTV-IFCQTRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDTGKL 275 Query: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR-LAPG------KTDCLIL 354 + +VNV VLT GFD+ + + +LR + S S Q+VGRGLR L P K DC++L Sbjct: 276 QVIVNVNVLTEGFDSQPISCVILLRGSSSKSSLIQMVGRGLRKLDPSRYPNVVKKDCVVL 335 Query: 355 DYA 357 D+ Sbjct: 336 DFG 338 >UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P241_USTMA Length = 775 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 113/391 (28%), Positives = 177/391 (45%), Gaps = 52/391 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARG--RVLVL 55 F+LRPYQ+E + L+ T + PTG+GK+ + L R G RV ++ Sbjct: 88 FSLRPYQEECIQDCLSALDCGVTRIGVSSPTGSGKTTIFTHLIDRLPPRSDTGGQRVAII 147 Query: 56 AHVKELVAQNHAKYQALGLEADI-FAAGLK-RKESHGKVVFGSVQSVARN---LDAFQ-G 109 + EL Q ++ E + G K R V + Q++ R+ LD F Sbjct: 148 VNSIELALQAANAVTSMFPEKSVEIEQGSKYRASGMADVTVATYQTLNRSQQRLDKFDPD 207 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGL------------TATPFRLG 157 EF ++VDE H Y ++L+H +P L+GL TA+ +G Sbjct: 208 EFKAVVVDEAHHAA---APSYLKVLSHF---DP---LIGLGLEQRQGQCSVPTASVPVIG 258 Query: 158 KGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQYDFSR 213 + H G+ G +F ++ MI +L P + D+ + S Sbjct: 259 FSATFSRH-DGLALGK---VFDRIVFHKDFLEMIGEKWLCPIRFTSIKADIDLASVKISN 314 Query: 214 LQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAAT-RKGVMIFAATVEHAKEIVGLL 272 L + A +N E+ + I+ ++ A R+ +IFA +EH +E+ Sbjct: 315 LNSDFATSSLAAVVNTEV-----VNKIILKAWIDRAHKHRRSTLIFAVNIEHVQELTNTF 369 Query: 273 PAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 + DA + G TP ER L+E+F+ + LVN A+LT G D P +D + + RPT S Sbjct: 370 RSAGIDARYLHGGTPMPERRQLLEDFRNGVYPVLVNCAILTEGADVPAIDCVLLARPTRS 429 Query: 331 VSLYQQIVGRGLRLAP--GKTDCLILDYAGN 359 +L+ Q++GRGLRL+P GK DCL+LD GN Sbjct: 430 RNLFSQMIGRGLRLSPKTGKKDCLVLDIVGN 460 >UniRef50_Q47CK6 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal n=3 Tax=Rhodocyclaceae RepID=Q47CK6_DECAR Length = 504 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 123/417 (29%), Positives = 185/417 (44%), Gaps = 55/417 (13%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL--ARLARGR-VLVLAH 57 M+F LRPYQQ A R + LPTG GK+L + +A+GR V+ LA+ Sbjct: 1 MMFNLRPYQQSAEHKARLALARGLKRIALYLPTGGGKTLTATSIIIKAVAKGRKVVFLAN 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 K+LV Q A G+ I A H +V+ S+ +V ++ + LLI+D Sbjct: 61 RKQLVNQTSAVLYRYGIPHGILQAE-NTARIHEQVLVASIDTV--HVRGLPDDVGLLIID 117 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + E +Y+++L V +GLTATPF +G G HY + +L Sbjct: 118 EAHGVAGSE--KYRKLLITYNNVPA----VGLTATPFAVGMGK----HYDEL----GGSL 163 Query: 178 FRDCIYELPLRYMIKHGYLT-----PPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 F++ + ++ +I YL P DM V+ + GL D N+ Sbjct: 164 FQELVVGATIKELIDAEYLVDVDIYAPSEPDMKGVK--------STKGLDGLLDYNQSEL 215 Query: 233 KQQRITPHIISQIME--FAATR-KGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGA 287 + P +I I+ F R K + FA ++ H+K IV A A I Sbjct: 216 EDAADKPELIGDIVGHWFKLARGKQTVCFATSIPHSKHIVEQFQAAGVAAEHIDYHADDD 275 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER ++ F L NVA+L G+D P +++ + RPT S+ + Q+VGR LR A G Sbjct: 276 ERAAILGRFAHGETMVLSNVALLAEGWDCPATEVMILARPTRSLIRFIQMVGRILRPADG 335 Query: 348 KTDCLILDYAGNPHDLYAP--------EVGTPKGKS-------DNVPVQVFCPACGF 389 K L+LD++G+ L P + G PK S +++P CP C F Sbjct: 336 KIKALLLDHSGSTARLGHPCDDLPLELDDGKPKASSTEKKERAESLPKA--CPFCKF 390 >UniRef50_D1WDT8 51.5 kDa protein n=5 Tax=Lactobacillus RepID=D1WDT8_9LACO Length = 465 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 130/506 (25%), Positives = 210/506 (41%), Gaps = 92/506 (18%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 +F LR YQ + ++ + + ++ P GK++++AE+AR L R+L L H Sbjct: 6 VFKLRDYQLKTINKIYDSIKSGHKKIIVQQPPRTGKTVIMAEIARRTTLKGNRLLFLIHR 65 Query: 59 KELVAQ--NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIV 116 KE++ Q N K Q + +E G VQ++ R ++ E L+++ Sbjct: 66 KEVLEQAINTFKQQEVDMEL---------------ATMGMVQTLYRKVNRLP-EPQLILI 109 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H YQ IL P+ +L TATP R GK + Q Sbjct: 110 DEAHHAA---AKTYQTILNAF----PNAFVLLFTATPIRTGKKQLDQ------------- 149 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + D I ++ +I GYL + V D +L+ S G F+ A + + + Sbjct: 150 VADDIIVGESIKNLISQGYLANFKYFARKDV--DTKKLKKSSTGDFTNASMEEAV--STK 205 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIE 294 I H++ + A ++ V +F +VE AK I + A + G+T A R+ ++ Sbjct: 206 IYGHVLDNYLRIAKGKQAV-VFTYSVESAKRIAKQFNSAGITAEELDGNTDTATRESIVN 264 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 +F+ ++ LVNV + T G D P VD + + RPT S++LY Q R L GKT +I+ Sbjct: 265 DFRNKKITILVNVNLFTEGVDLPDVDCVIMTRPTASLALYLQFSMRCLNPRKGKT-AIII 323 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGW 414 D+ GN G P + D W T I ++ + Sbjct: 324 DHVGNYE-----RFGLPNSERD-----------------W------RTAIVTKDKKTKKK 355 Query: 415 FEDDDGHREQCDFRFR------FKN--CPQCNAENDIAARRCRECDT-----VLVDPDDM 461 ++D QCDF FR KN CP C N I R+ E V+ D ++ Sbjct: 356 QQNDSLSIVQCDFCFRVFERSDVKNGTCPGCG--NPIKVRKAPEVTNDQLQEVIQDRKNL 413 Query: 462 LKAALRLKDALVLRCSGMSLQHGHDE 487 ++ + L + +S H + E Sbjct: 414 VEKIISDNTKLAIAGKKLSELHTYKE 439 >UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DW03_ZYGRO Length = 650 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 107/371 (28%), Positives = 168/371 (45%), Gaps = 40/371 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA----ELARLARGRVLVLAHVKE 60 LR YQQ +D L + +K + L TG GK+++ A +L++ R LVL H +E Sbjct: 24 LRDYQQHVIDKCLESLKDNKRRIGVSLATGGGKTVIFANLIKQLSQQTPHRALVLVHRRE 83 Query: 61 LV---AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG-EFSLLIV 116 LV AQ K+ L + + V+ SVQS+ R LD ++ + L+IV Sbjct: 84 LVLQAAQTIKKFMPLARIQIEMGKYVCQDVKDCDVIVASVQSLIRRLDNYESTDIDLVIV 143 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H + Y +IL H K P ++G +AT R D KA Sbjct: 144 DEAHHA---VANSYLRILDHFKKDIP---VVGFSAT----------------FERADHKA 181 Query: 177 L---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 L + +Y + MI +L + + + S +A + F L+R + Sbjct: 182 LSTVMDEIVYHKGILEMINDNWLCEGKFTTVKIDADLNSVERASGSDDFKLDQLSRVMNI 241 Query: 234 QQRITPHIISQIMEFAATRKG----VMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 + I ++ + + + G ++FA ++H K + L + A +T +T Sbjct: 242 PE-INGLVLKTYLHKSKEQPGGFNSTLLFAVDIKHVKALHHLFVSYGIKAECVTSETKAR 300 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ERD +I+NFK + L+N + T G D P +D I + RPT S SL Q++GRGLRL Sbjct: 301 ERDQIIDNFKKGDVKVLINCGIFTEGTDMPGIDCILLCRPTRSRSLLVQMIGRGLRLHHS 360 Query: 348 KTDCLILDYAG 358 K C I+D+ G Sbjct: 361 KDFCHIIDFVG 371 >UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5DHE1_LACTC Length = 672 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 113/376 (30%), Positives = 166/376 (44%), Gaps = 43/376 (11%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARG------RVLVL 55 LR YQ E +D L + + + L TG GK+++ + L RL R R L+L Sbjct: 31 LALRDYQHECIDRCLESISQGRRRIGVSLATGGGKTVIFSNLIDRLRRESGKSGYRTLIL 90 Query: 56 AHVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FS 112 H +EL Q QA GL I K + VV SVQS+ R L+ + Sbjct: 91 VHRRELAQQACRVLQAFFPGLNFQIEMGNYKCDINSADVVVASVQSLIRRLERYDPSCID 150 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPH---LRLLGLTATPFRLGKGWIYQFHYHGM 169 L+I+DE H Y +IL H K N L ++G +AT Sbjct: 151 LIIIDEAHHAA---AKSYLRILEHF-KANHKDSILPVVGFSAT----------------F 190 Query: 170 VRGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 R D KAL + +Y + MI +L R V D S + A + F+ Sbjct: 191 ERADNKALSAVIDEIVYHRGILEMIDDKWLCEG-RFTTVSVSLDLSDV-AVTGSDFNIDG 248 Query: 227 LNR--ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITG 282 L++ K+ ++ Q + R ++F ++H + + L +A +TG Sbjct: 249 LSKVVNTKEVNKVVLQTYLQKRDLHKLR-STLLFGCDIKHIETLHSLFVKHGVNAQYVTG 307 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 T +ERD ++E+FK R L+N V T G D P+VD I + RPT+S SL Q++GRGL Sbjct: 308 KTRQSERDAIVEDFKRGRIEVLMNCGVFTEGTDIPNVDSILLCRPTKSRSLLVQMIGRGL 367 Query: 343 RLAPGKTDCLILDYAG 358 RL K C I+D+ G Sbjct: 368 RLHHSKKHCHIIDFVG 383 >UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBM5_9BACT Length = 553 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 184/385 (47%), Gaps = 49/385 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---------LARGRVLVL 55 LRPYQ E + R ++ +PTG GK++V + + ++L++ Sbjct: 36 LRPYQAEMKHNVYGLWDRIDN-VMLQMPTGTGKTIVFTSVVKDILRWCNLHSRESKILIV 94 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQG-EFS 112 AH +EL+ Q K + + L +S + S+Q+ R+ + + +F Sbjct: 95 AHRRELIRQASRKLGNIPHGVIVSGEKLDLDKS---IQVASIQTFMSRRHYEIMRRVQFD 151 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +I+DE H YQ+ L ++ P+ + LG+TATP+R+ + G Sbjct: 152 FIIIDEAHHC---MAPGYQK----LWEMFPNSKKLGVTATPWRMS--------HCGFT-- 194 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDM---PVVQYDFSRL-QAQSNGLFSEADLN 228 +LF D + + + + GYL + + + VQ+ + + + ++G + +++L+ Sbjct: 195 ---SLFGDIVLAKSIEWFVNQGYLANYDYISIKPTSEVQHAINGIDRMGADGDYLDSELS 251 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPG 286 + K +I + ++A +KG+ I+A +HA I L + + +I G TP Sbjct: 252 AVIDKA-KIRAGLYKSYEKYAKGKKGI-IYAIDRKHASNICDLYATKGVSVCMIDGTTPT 309 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 AER+ I +F +VNV + + GFD P ++ I + RPT+S+SLY Q VGRGLR++ Sbjct: 310 AEREQKIADFANGSIEVIVNVNIFSEGFDCPDIEFIQLARPTKSLSLYLQQVGRGLRISK 369 Query: 347 GKTDCLILDYAGNPHDLYAPEVGTP 371 GK +ILD G LY GTP Sbjct: 370 GKETTIILDNVG----LYN-RFGTP 389 >UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXK7_9BACT Length = 445 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 110/362 (30%), Positives = 174/362 (48%), Gaps = 43/362 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVA 63 LR YQ A +A F H+ ++VLPTG GK++V+A LA + R LVLAH +EL+ Sbjct: 10 LRGYQVAAHEAIQRGFAEHQR-QLLVLPTGGGKTVVLAHLAATHQPRRTLVLAHREELIT 68 Query: 64 QNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ---GEFSLLIVDEC 119 Q K +A+ GL ++ A R + VV SVQ++ R+ + F LL+VDE Sbjct: 69 QAVDKIRAVTGLIPEVEMADF-RASLNAPVVVASVQTLVRSSRRERWPHDHFGLLVVDEA 127 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL-- 177 H S L L + + +LG+TATP R GD+K L Sbjct: 128 H------HSLADSYLNTLRYFDENAFVLGVTATPDR----------------GDKKNLGR 165 Query: 178 -FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 +++ YE+ L +++ +L+P +P+ + D + + G ++ DL Sbjct: 166 YYQNIPYEVTLLDLVQQNWLSPIRVKTVPL-EIDLDDV-GTTAGDYNAQDLG------HA 217 Query: 237 ITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIE 294 I P++ ++ ++ RK +++F + ++ L D +R ++ Sbjct: 218 IEPYLERVADVLAEHVQRK-ILVFLPLISLSRGFAELCRQRGLRAEHVDGTSDDRGDILA 276 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 F+ R L N +LT G+D P +D + LRPT+ SLY QIVGRG RL PGK L+L Sbjct: 277 RFRRGETRVLTNAMLLTEGYDEPSIDCVVCLRPTKIRSLYSQIVGRGTRLYPGKDHLLLL 336 Query: 355 DY 356 D+ Sbjct: 337 DF 338 >UniRef50_A6FFB6 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FFB6_9GAMM Length = 555 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 106/366 (28%), Positives = 177/366 (48%), Gaps = 44/366 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQ+E V+ +L+ +++ A + TGAGK+ V++ +A RVL+L H+ EL Q Sbjct: 3 LRRYQEEMVEKSLDALLKYQGVACVA-ATGAGKTCVLSYIA-AQFNRVLILQHLDELKQQ 60 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGD 124 N + + + D + + FG +Q+V LD + L+I+DECHR+G Sbjct: 61 NAETFGWVNPKLDYGFIDPDNNDFNKPYAFGMMQTVVHRLDDMT-HYDLIIIDECHRLG- 118 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL--FRDCI 182 Y++I+ +NP +++ G +AT + R D+K+L + D + Sbjct: 119 --AISYEKIIERARVINPDVKVFGTSAT----------------IERRDQKSLSKYLDVV 160 Query: 183 -YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS-NGLFSEADLNRELKKQQRITPH 240 +++ L +I+ GYL PP V++ D A + + EA LN ++ Q+ Sbjct: 161 AHQVQLDDLIRQGYLVPPRAF---VIKVDGVEAAANAKDDEQVEAVLNTDVTNQR----- 212 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIENFKA 298 I+++ E A+TR V F TV HAK++ A ++G ER ++ F+ Sbjct: 213 IVNEWKERASTRLTVA-FCQTVNHAKDVAQAFNDNGIAATHVSGVMKPRERKKRLKAFER 271 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR-LAPG------KTDC 351 ++ L N +LT G++ P V + ILR + S Q+ GR LR + P K D Sbjct: 272 GEYQVLTNATLLTEGWNCPPVSCLLILRGSSSKGALIQMAGRVLRKVNPSDYPNVIKHDA 331 Query: 352 LILDYA 357 LILD+ Sbjct: 332 LILDFG 337 >UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7S3_DESRM Length = 459 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/403 (26%), Positives = 188/403 (46%), Gaps = 46/403 (11%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHV 58 +F LRPYQ+ ++ + FR + IV P GAGK++++A +A + R VL H Sbjct: 1 MFKLRPYQELLIEGVRDEFRSGRRKTCIVAPCGAGKTVIMAWMAAQSATRGQSVLFAVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 +EL+ Q+ + A+G++ I A G + ++ GS+ +VAR LD +++I DE Sbjct: 61 QELIDQSSETFTAMGIQHGIIAPGCS--ATGDQIQIGSIFTVARRLDRINPP-NVIIFDE 117 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + L + P ++GLTATP R +G GD +F Sbjct: 118 SHHAKAN-------TWVKLMEAFPQAFVIGLTATPART----------NGDGMGD---IF 157 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++ +I+ G LTP + P V+ + L+ + G + ++D+ + + + I Sbjct: 158 ESLVLGPSVKQLIEWGNLTPYKYF-APPVKANLDGLRVKY-GDYIKSDITLAMDRSE-II 214 Query: 239 PHIISQIMEFAATRKGVM--IFAATVEHAKEI--VGLLPAEDAALITGDTPGAERDVLIE 294 I Q + ++ + + A EH E+ +PA+ I G+T R I+ Sbjct: 215 GDAIEQYKKLTDGKRAIAYCVSRAHSEHTAEMFRAAGIPAQH---IDGETEQGVRKAAID 271 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD--CL 352 F+ + L NV +++ GFD P ++ + +LRPT+S++L+ Q R +R D + Sbjct: 272 QFRTGNIKVLCNVDLISEGFDVPAMEAVLLLRPTQSLTLHIQQSMRPMRPDKDNPDKVAI 331 Query: 353 ILDYAGNPHDLYAPEVGTP-----KGKSDNVPVQVF---CPAC 387 I+D+ GN + P+ K K+ P +V CP C Sbjct: 332 IIDHVGNCYRHGLPDEDRSWSLEGKKKNSTGPREVSLRQCPKC 374 >UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QJS8_PENMQ Length = 666 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 172/369 (46%), Gaps = 39/369 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARG-RVLVLAHV 58 LR YQ+E++ + + + + + L TG+GK+++ +L R R + L++AH Sbjct: 61 LRDYQEESIQSVIENLGKGHNRLGLSLATGSGKTVIFTQLIHRIPPRNGRADQTLIIAHR 120 Query: 59 KELVAQ--NHAK--YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQ-GEF 111 KELV Q H + Y +E ++ G + + S++S+A ++ F F Sbjct: 121 KELVEQAARHCRLAYPDKTVEIEM---GATKASGAADITVASIRSLASKGRIEKFDPSYF 177 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHG 168 L++VDE H I QY+Q L + P L+G++AT FR + G Sbjct: 178 KLVLVDEAHHI---VAPQYRQALEYFGLTEPSNNAPALVGVSATFFR----------FDG 224 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 + G ++ +Y MI +L+ + D SR+ S+G F+ L+ Sbjct: 225 LKLG---SVIDHIVYHKDYIDMIGEKWLSDAIFTTVKT-NVDLSRVAKDSSGDFATRALS 280 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPG 286 E + + + A+ R+ ++F +EH +++ DA IT +TP Sbjct: 281 -EAVNTATVNDVTVRSWLTHASDRRSTLVFCVDIEHVRQLTEAFRDNGIDARYITANTPR 339 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 R+ +E FK + L+N + T G D P++D + + RPT S SL Q++GRGLRL P Sbjct: 340 QTRNEELEAFKKGEYPVLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHP 399 Query: 347 GKTDCLILD 355 K +C I+D Sbjct: 400 QKENCHIID 408 >UniRef50_A6L307 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=A6L307_BACV8 Length = 751 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 172/352 (48%), Gaps = 44/352 (12%) Query: 17 LNHFRRHKTPAVIVLPTGAGKS----LVIAELARLARGRVLVLAHVKELVAQNHAKYQAL 72 + ++ H++ ++ +PTG GK+ V++E A V ++AH +ELVAQ Sbjct: 6 MEAWKAHRS-VMVQMPTGTGKTHLLASVVSEFVSSAGSGVWLIAHRRELVAQ-------- 56 Query: 73 GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQ 132 +E + G++R+++ +V+ SVQ ++R+ + L+++DE H Sbjct: 57 -MEETLAKYGIRREDTPVRVM--SVQWLSRHWNEAGDAPGLIVIDEAH-------HALAA 106 Query: 133 ILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIK 192 T + K P + LG+TATP RL + RG + LF + + I+ Sbjct: 107 SYTEMWKRYPAAKKLGVTATPCRLNR------------RGFTE-LFEVLVTSWSIAEFIE 153 Query: 193 HGYLTPPERLDMPVVQYDFSRLQA----QSNGLFSEADLNRELKKQQRITPHIISQIMEF 248 G L+ + + + + + ++G + +++ L ++ I + + +F Sbjct: 154 KGVLSVFDYVSIRPGSEERRLIDGLEKRGADGDYQVKEMDAVLNRRPGIE-RLYRSVRQF 212 Query: 249 AATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVN 306 A+ +KG M++A ++EHA+ I +A + TP ER ++E F+ + LVN Sbjct: 213 ASGKKG-MVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRMVEEFRHGKIEVLVN 271 Query: 307 VAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 V V + GFD P V+ + + RPT S++ Y Q VGRGLR + GK C+++D G Sbjct: 272 VDVFSEGFDCPDVEFVQLARPTLSLAKYLQQVGRGLRRSEGKEACMLIDNVG 323 >UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZP0_9BACT Length = 950 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 102/339 (30%), Positives = 153/339 (45%), Gaps = 32/339 (9%) Query: 27 AVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRK 86 A+ +L TG GK+ + A R RVL LAH +E++ Q + + E Sbjct: 346 ALAILATGLGKTYLAAFDCR-GFSRVLFLAHRREILEQARETFFRVHPEKPASVVSEGEA 404 Query: 87 ESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPH 143 + G +VF VQ++AR L+ F ++VDECH E Y++IL H P Sbjct: 405 DVSGDLVFAQVQTLARPSRLLNIPPETFDYIVVDECHHA---EAPSYRRILDHF---RPK 458 Query: 144 LRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD 203 +LGLTATP+R+ G I+ D + R E I+ G L P Sbjct: 459 F-VLGLTATPYRMDNGDIFALM-------DGHVVCRRTFIE-----GIRGGMLVPFHYFG 505 Query: 204 MP-VVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATV 262 + V Y+ G + L R L + +R + E ++ + F + Sbjct: 506 LKDTVDYE---TIPWRGGRYDPEALERALTESRR-AQETLRAFREHEGSK--TVAFCVSR 559 Query: 263 EHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVD 320 HA+ + E A +TG+TP ER ++ F+ L V +L G D P +D Sbjct: 560 LHARLLAEFFSREGIAAGHLTGETPSGERREILRKFREGSLSILFVVDLLNEGVDIPEID 619 Query: 321 LIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 + +LRPT+S +++ Q +GRGLRLAPGK ILD+ GN Sbjct: 620 RVMLLRPTDSPTVFLQQIGRGLRLAPGKGHLTILDFIGN 658 >UniRef50_A0YZ56 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YZ56_9CYAN Length = 723 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 110/406 (27%), Positives = 179/406 (44%), Gaps = 54/406 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVKEL 61 LRPYQQ D N + ++ PTG+GK+ + +R RVL+L H + L Sbjct: 30 LRPYQQTIKDEVYNQLNQGIHRILVYSPTGSGKTATFCSMIADFLASRHRVLLLMHREFL 89 Query: 62 VAQNHAKYQALGLEAD---IFAAGLKRKESHGKVVFGSVQSVAR-----NLDAFQGEFSL 113 + Q + G+ + I AG + +QS++R N+D + Sbjct: 90 IEQTVKTLRRFGVPTEAIGIIKAGYSENRDR-PLQLAGIQSLSRRQHPQNID-------I 141 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLG--KGWIYQFHYHGMVR 171 +I DE H I S+Y+++L L N +++ G TA+P+RL K + ++ + +V+ Sbjct: 142 VIGDEAHTIC--WYSEYKKLLNSL---NNSIQI-GFTASPWRLKPHKQYFGEW-FDTIVK 194 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 G + +RY K G + D ++L S G F + ++ Sbjct: 195 GPTIQELMSLGFLARVRYFGKGGLV-------------DLTQLDTDSTGDFKTLQMEQKF 241 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT----GDTPGA 287 I + +I+E R GV IF + V+ +K+ LL +A + T TP Sbjct: 242 L-DAGICEAVRQRILELCLCRTGV-IFNSGVKQSKQQTELL--NEAGIFTKHIDAHTPIN 297 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER + + + R + +V LT GFD + + + R T+S +LY Q+ GRGLR PG Sbjct: 298 ERRRMFQELEKGEIRCISSVGCLTEGFDCQSIGYVVLARATQSQALYYQVAGRGLRTCPG 357 Query: 348 KTDCLILDYAGNPHDL----YAPEVGTPKGKSDNVPVQV-FCPACG 388 K +CL+LD+ GN +P + NV + CP CG Sbjct: 358 KENCLLLDFGGNVKRFGFLTKSPSITLEPTPPPNVKEMLKTCPDCG 403 >UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B6H0F8_PENCW Length = 645 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 105/373 (28%), Positives = 167/373 (44%), Gaps = 36/373 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-ARL-----ARGRVLVLA 56 LR YQ+E++ + L + I L TGAGK+++ +L +R+ + +++ Sbjct: 43 IVLRNYQEESIQSVLKYLGEGHRRLGISLATGAGKTVIFTQLISRIPPRDTKATKTMIIV 102 Query: 57 HVKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARN-LDAFQ-GEFS 112 H +ELV Q AK+ +L G G ++ SVQ++AR + F F Sbjct: 103 HRRELVEQA-AKHCSLAYPDKTVEIEMGKNVATGAGDIIIASVQTLARGRMYKFDPSAFK 161 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I Y++ L H P L+G++AT R + G+ Sbjct: 162 LVLVDEAHHI---VAKSYREALGHFGLNEPSPNGPVLVGVSATFSR----------FDGL 208 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 G A +Y MI +L + + S+++ S G F+ L+ Sbjct: 209 KLG---AAIDHIVYHKDYVDMIGENWLANAVFTTVKS-GANLSKVKKDSFGDFALGSLSE 264 Query: 230 ELKKQQRITPHI-ISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPG 286 + T +I + M A RK ++F +EHA+ + DA IT TP Sbjct: 265 AVNTTS--TNNITVRAWMASAENRKSTLVFCVDIEHARRLTAAFRDHGVDARYITASTPK 322 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 R + FK Q F L+N + T G D P++D + + RPT S +L Q++GRGLRL P Sbjct: 323 GVRVEQLRAFKDQEFPVLLNCGLFTEGTDIPNIDCVLLARPTRSRNLLIQMIGRGLRLFP 382 Query: 347 GKTDCLILDYAGN 359 GK DC ++D + Sbjct: 383 GKKDCHVIDMVAS 395 >UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YI12_EXIS2 Length = 774 Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 168/363 (46%), Gaps = 44/363 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 Q+EA+ A +T A+ VL TG GK+ + A AR + R+L LAH +EL+ Q Sbjct: 199 QEEALRALRETMEEGRTRALTVLATGLGKTYLSAFFARDFK-RILFLAHQRELLEQAERS 257 Query: 69 YQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIG 123 ++ + + + + + V+FGSVQ++++N L+ F Q F L+I+DE H Sbjct: 258 FKKVESNWQTAFYIGSDRTNDEQTDVLFGSVQTLSQNRHLERFAQDYFDLIIIDEFHHAA 317 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ++L H P LLGLTATP R+ +Y + + Sbjct: 318 ---AKSYQKVLAHF---EPRF-LLGLTATPDRMDGADVYAL------------CDNNVAF 358 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL----FSEADLNRELKKQ--QRI 237 ++ I G+LTP + V D+S+L+ +A ++R + + Sbjct: 359 QMHFTSAINEGFLTPFHYYGIHDV-IDYSQLRRMGRKYDAMELEQAQIDRTVSENIYAAW 417 Query: 238 TPHIISQIMEFAATRKGVMIFAATV-EHAKEIVGLLPAEDAALITGDTPGAERDVLIENF 296 + H ++ + F ++ + A T E +++ L TG T R I+ F Sbjct: 418 SKHRQTKTIGFCSSIRQAEYLAQTFREMGHQVIAL---------TGQT--INRRERIQEF 466 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + + V + G D P VD + RPTES+++Y Q +GRGLRLA K+ C+I+D Sbjct: 467 EQGTVEIVFTVDLFNEGVDIPKVDTLLFCRPTESIAIYTQQIGRGLRLANEKSHCVIIDL 526 Query: 357 AGN 359 GN Sbjct: 527 IGN 529 >UniRef50_B2GAW8 Phage helicase n=5 Tax=root RepID=B2GAW8_LACF3 Length = 448 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 113/380 (29%), Positives = 172/380 (45%), Gaps = 55/380 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L YQQE VD + ++V P G+GKS++IAE+ RLA G V+ + H Sbjct: 1 MFKLFGYQQELVDKARQSLAKGNHSVLLVSPAGSGKSVIIAEITRLAIEKGGHVMFMVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KELV Q + L+ DI SH V+ +V + R L +L+I DE Sbjct: 61 KELVDQIIDTF----LKDDI-------DLSHTTVM--TVGKIKRRLGKLPTP-TLIITDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKAL 177 H YQ I V P L G +ATP+RL GKG K + Sbjct: 107 THH---SLAKTYQDIYNWYDNV-PRL---GFSATPWRLSGKGL--------------KNV 145 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQY---DFSRLQAQSNGLFSEADLNRELKKQ 234 + D + ++++I + YL D + Y D S+L+ S G ++ ++ K Sbjct: 146 YDDMVEGPSVQWLIDNSYLA-----DYTMYGYKSGDDSQLKKSSTGDYTGRSMDDYAK-- 198 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVL 292 I +I E A RK +++ V +K++ + AA + TP ER + Sbjct: 199 TIIRGDVIKTWREKANERK-TIVYCHAVWFSKQVAQVFNNAGIKAAHVDSKTPSGERSKI 257 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 + +FKA + L N +++ GF+ P + +LRPTES+ LY Q R +R PGK + Sbjct: 258 MVDFKAGKIMVLCNCDLISEGFNVPDCSCVVLLRPTESLVLYIQQSMRPMRFVPGK-HAV 316 Query: 353 ILDYAGNPHDLYAPEVGTPK 372 I+D GN P+ TP+ Sbjct: 317 IIDQVGNFKKFGTPD--TPR 334 >UniRef50_UPI00016C5789 putative DEAD box family helicase, phage associated protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5789 Length = 611 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 107/406 (26%), Positives = 178/406 (43%), Gaps = 75/406 (18%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA----ELARLAR-GRVLVLA 56 + T RPYQ+++VD F + +++LPTG GK++V + AR R GRVLVLA Sbjct: 1 MITPRPYQKQSVDRVFGRFDAGEPSTLVILPTGCGKTVVFGLVSQQWARECRPGRVLVLA 60 Query: 57 HVKELVAQNHAKYQALG------LEADIFA--AGLKRKESHGKVVFGSVQSVARNLDAF- 107 H EL+ Q + Q + +AD +A AG ++ VV GSVQ++ R+ Sbjct: 61 HRDELIQQAAEELQGITGSAPAIEQADRYAVPAGGSMGDAP-SVVVGSVQTLCRDRRLAR 119 Query: 108 --QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH 165 + EF L++ DECH Y++I H + LG+TATP Sbjct: 120 WPKDEFGLIVTDECHHA---TSPSYRKIYDHFGAA----KRLGVTATP------------ 160 Query: 166 YHGMVRGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF 222 R D+ AL F +++ + + G+L P E+ + V D S ++ + F Sbjct: 161 ----KRADDLALGHVFGSVAFDMGICDAVDEGWLCPVEQRYVTVNGMDLSAVKTAGDD-F 215 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEI---------VGLLP 273 S+ + L + +++ +E +IF A +++ + + Sbjct: 216 SDGAIGAVLSGDS-VLDQMVAATIELCGDEP-TLIFTAPRPPGEQVSQGDLFADALNKIK 273 Query: 274 AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSL 333 E A ++G+T R IE F+ ++LV ++ T GF+ P + + + RPT+S + Sbjct: 274 PERAVFLSGETDKDVRRREIELFERGERQFLVGCSLFTEGFNVPKISRVVMARPTKSNAY 333 Query: 334 YQQIVGRGLRLAPG--------------------KTDCLILDYAGN 359 Y Q +GRG R G K L++D+ GN Sbjct: 334 YTQAIGRGTRTLRGTLHPDLATPEARRAAIAASAKPSVLVIDFVGN 379 >UniRef50_A0AI00 Complete genome n=11 Tax=root RepID=A0AI00_LISW6 Length = 418 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 100/373 (26%), Positives = 179/373 (47%), Gaps = 58/373 (15%) Query: 31 LPTGAGKSLVIAELARLA---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKE 87 L GAGKS++++E+ R+ + VL L H KEL+ Q + + E D+ L Sbjct: 6 LRLGAGKSVILSEIIRMTTNNKNHVLFLVHRKELIDQ--IRNTLIMNEVDMEFVKL---- 59 Query: 88 SHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLL 147 G VQ++ R L+ E SL+I+DE H + + Y++I+ H +K +++ Sbjct: 60 -------GMVQTIVRRLNK-TSEPSLIIIDESHHV---LANSYKKIIHHFSKA----KVV 104 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE-LPLRYMIKHGYLTPPERLDMPV 206 G TATP R+ G + GD D + E + ++++I++ +L + + Sbjct: 105 GFTATPVRINGGGL----------GD----INDALIEKVNVKWLIENRFLASYKYYAPEI 150 Query: 207 VQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAK 266 VQ + L + G F L+ + K+ + +I + A + ++ +A+++ ++ Sbjct: 151 VQTE--TLNVKQTGEFDMTGLDDQFNKKM-VWGDVIKHYQKLANGEQAIL-YASSIYQSE 206 Query: 267 EIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAI 324 ++ A +A I G TP RD +I+ F+ + L N+ ++ GFD P + + Sbjct: 207 KMAASFNAVGISSAHIDGKTPKLIRDDIIKRFREGEIKVLCNLDLIGEGFDVPDCSTVIM 266 Query: 325 LRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV----------GTPKGK 374 LRPT+S+SLY Q RG+R GKT I+D+ GN P++ G+ K Sbjct: 267 LRPTQSLSLYIQQSMRGMRYKQGKT-ATIIDHVGNVKRFGLPDMERTWSLEPRKGSNSTK 325 Query: 375 SDNVPVQVFCPAC 387 ++ PV++ C C Sbjct: 326 AE-APVKI-CKEC 336 >UniRef50_B7XGM0 Helicase n=3 Tax=Pseudomonas RepID=B7XGM0_PSEPU Length = 496 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 109/409 (26%), Positives = 176/409 (43%), Gaps = 50/409 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVKEL 61 LRPYQQ+ +++ PTG+GK+ V + A+ R + +L Sbjct: 3 LRPYQQQQDFELRKGISLGAIIQMLMSPTGSGKTEVAKHIIAGAQAKNRRAWFIVDSVKL 62 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS--LLIVDEC 119 + Q ++ GL A + + + ++QS+ LD L+++DE Sbjct: 63 LDQTLERFYKDGLVAGAIQSDHPCTDYRKPIQVATIQSLRPRLDYMLNHHKPHLVLIDEA 122 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H I E+ + I P ++GL+ATP+R G G I F Sbjct: 123 HVI---HEAHIELITWCRRNKVP---VIGLSATPWRRGLGRI----------------FD 160 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 I + L + G+L P + P V + + NG + E +L + ++ Sbjct: 161 RLINCISLSELTDQGFLVPTQ-CYAPSVP-SLKGVSTKPNGDWIEDELATVMG-DAKLLG 217 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 +++ E RK M+FA V+H+K++ AA I G E + ++ +K Sbjct: 218 DVVTHWKELGENRK-TMVFACNVQHSKKLAAEFQKAGVAAAHIDGYMLPHETEEILRQYK 276 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILD 355 A + R LV+VA+L GFD P + I RPT+S+ L+ Q++GRGLRL+P GK DC+I+D Sbjct: 277 AGKIRVLVSVAMLIKGFDDPSTSCLVIARPTKSLMLHYQMIGRGLRLSPETGKIDCIIID 336 Query: 356 YAGN------PHDLYAPEVGT---------PKGKSDNVPVQVFCPACGF 389 ++GN P D + P+ K D CP C F Sbjct: 337 HSGNLLLNGKPTDEVPDAMDNGEGERLDRRPQDKGDQEKKTKPCPKCSF 385 >UniRef50_B4WJ71 Type III restriction enzyme, res subunit family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJ71_9SYNE Length = 544 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 104/402 (25%), Positives = 176/402 (43%), Gaps = 42/402 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVKEL 61 LRPYQ+ + I+ TGAGK+++ ++ A A R++ L H+ L Sbjct: 23 LRPYQETLIKDLYKELNAGHKRVAIIAGTGAGKTVISGQICAHAEAAGKRLMFLVHLDVL 82 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 V Q + K +A GL+ AG + + S+Q++A+ + ++ DE H Sbjct: 83 VGQTYEKMKAFGLQCGFIKAGWEENRD-APIQIASIQTMAKRRWWQKWPADVVFYDEGHI 141 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 + + TH V+ L +TATP RLGK + GD + + Sbjct: 142 TLFSQVGKKVMTKTHANAVH-----LVMTATPLRLGKEQL----------GD----YLET 182 Query: 182 IYELPLRYMIKH-GYLTPPERLDMPVVQYDFSRLQA--QSNGLFSEADLNRELKKQQRIT 238 + P+ +++ GYL+ + MP + + L+A + G + E DL + + + Sbjct: 183 LVSSPVPNVLQEMGYLSTMKYYSMP--RDSMANLEAVKTARGDYDEQDLKNACDRIE-LV 239 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENF 296 I+ + ++ + F +EHA + A + G+T ER L + Sbjct: 240 EKIVQEWFRIGKGKR-TIAFCVDIEHANHVAAEFQKAGISAETVDGNTSIKERKRLYQAL 298 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLIL 354 K L + V++ GFD P V++ +LRPT S +++ Q +GR +R++P GK +IL Sbjct: 299 KVGELMVLTSCNVISIGFDEPSVEVGLMLRPTMSSAMHFQQLGRVMRISPQTGKEYGIIL 358 Query: 355 DYAGN------PHDLYAPEVGTPKGKS--DNVPVQVFCPACG 388 D AGN P D+ + + T S P CPACG Sbjct: 359 DQAGNLQRLGFPEDIESYSLPTRAASSGGGGAPPTKPCPACG 400 >UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN59_9ACTN Length = 865 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/339 (29%), Positives = 153/339 (45%), Gaps = 37/339 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVKEL 61 LRPYQ EAV++ + ++ + TG GK++ AE+ + GR L+LAH EL Sbjct: 3 LRPYQVEAVESVFREWESGNRRTLLSMATGCGKTICFAEIVKRVAATGGRSLILAHRGEL 62 Query: 62 VAQNHAKYQ-ALGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQ-GEFSLLIVD 117 + Q K Q GLE+ + A S +V GSVQ++ R L+AF F +IVD Sbjct: 63 LEQAADKIQRTSGLESALEKAESTSLNSWARVTVGSVQTLMRQDRLNAFAPNRFDAIIVD 122 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y +IL H R+LG+TAT R K D + Sbjct: 123 EAHHTLAE---GYIRILDHFKGA----RVLGVTATADRADKK-------------DLGEV 162 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 + +E + IK GYL P E +M ++ D S + ++G + L L+ Sbjct: 163 YDSIAFEYGIAQAIKDGYLCPIE-AEMVPLELDVSSVSV-THGDYQAGQLGDALE----- 215 Query: 238 TPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 P++ I+ M + ++F V AK L + D +R+ ++ + Sbjct: 216 -PYLDAIADAMVTRCQDRRTVVFLPLVRTAKAFAEKLNERGLIVCEVDGQSEDREEILSD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 F +++ L N +LT G+D P VD I LRPT+S LY Sbjct: 275 FNRGKYQVLCNSMLLTEGWDCPSVDCIVCLRPTKSRGLY 313 >UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Saccharomyces cerevisiae RepID=IRC3_YEAST Length = 689 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 99/376 (26%), Positives = 164/376 (43%), Gaps = 44/376 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL----------ARLARGRVLV 54 LR YQQ+A+DA +N R+ + L TG GK+++ + L R + L+ Sbjct: 33 LRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLI 92 Query: 55 LAHVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEF 111 L H +EL Q A + + L+ I V+ SVQ++ R L + Sbjct: 93 LVHRRELALQATATLKKIFPDLKVHIEMGKYDCDIEDSDVIVASVQTLIRRLHKYDTNSV 152 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIYQFHYHGM 169 +L+I+DE H + Y+ IL H ++ +G +AT Sbjct: 153 NLIIIDEAHH---SVANSYRSILDHFKASTAETKIPVIGFSAT----------------F 193 Query: 170 VRGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 R D++AL +Y + MI +L + + + + D S +++ ++ F A Sbjct: 194 ERADKRALSMVMDKIVYHRGILEMIDDKWLCEAKFTSVKI-EADLSDVKSTADD-FQLAP 251 Query: 227 LNRELKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAE--DAALITG 282 L+ L + I I+ + + K ++F H + + L + +T Sbjct: 252 LS-SLMNTKEINEVILKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTS 310 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 DT ERD +I+ FK L+N + T G D P++D I + RPT+S SL Q++GRGL Sbjct: 311 DTKQIERDNIIQKFKNGETEVLMNCGIFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRGL 370 Query: 343 RLAPGKTDCLILDYAG 358 RL K C I+D+ G Sbjct: 371 RLHHSKDHCHIIDFIG 386 >UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFJ4_CALS8 Length = 899 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 100/348 (28%), Positives = 161/348 (46%), Gaps = 45/348 (12%) Query: 27 AVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKR 85 A++V TG GK+ +A + VL +AH +E++ Q ++ + A I F G R Sbjct: 310 ALVVAATGIGKTF-LAAFDSIGFKTVLFVAHREEILRQAALSFKTIRSNATIGFFTG-DR 367 Query: 86 KESHGKVVFGSVQSVAR----NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKV 140 KE+ ++F SVQ++ + N F + F +I+DE H YQ I+ + Sbjct: 368 KETEKDIIFASVQTLGKEEYLNPTYFSSDYFEYIIIDEFHHAV---AKSYQNIINYFK-- 422 Query: 141 NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC----IYELPLRYMIKHGYL 196 P LLGLTATP RL D K +F C +YEL L+ I GYL Sbjct: 423 -PKF-LLGLTATPERL----------------DNKDVFELCNYNVVYELRLKDAINKGYL 464 Query: 197 TPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVM 256 P + + DFS++ + NG + E +L + L +R I+ ++F ++ + Sbjct: 465 VPFHYYGI-YDETDFSQI-PEINGKYKEDELEKVLMIHKR-ADLILKNYLKF--NKQKTL 519 Query: 257 IFAATVEHAKEIVGLLPAEDA---ALITGD--TPGAERDVLIENFKAQRFRYLVNVAVLT 311 F + HA+ + A+ +G+ +R I K + + + V + Sbjct: 520 AFCCSRNHAEFMADYFNKNGVKCCAVYSGEQGKNALQRSEAIRKLKNGQIKVIFTVDMFN 579 Query: 312 TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 G D P +D++ LRPTES +++ Q +GRGLR A K +LD+ GN Sbjct: 580 EGVDIPEIDMVMFLRPTESPTVFLQQLGRGLRKAKNKNYLTVLDFIGN 627 >UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YWD0_9CYAN Length = 571 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/399 (26%), Positives = 176/399 (44%), Gaps = 62/399 (15%) Query: 18 NHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVKELVAQNHAKYQALGL 74 N ++R + V P GK++V + + A +VL++ + L+ Q L Sbjct: 56 NGYKR----VLFVAPCAYGKTIVFSSITYDAIQKNCKVLIVVPFQALIQQVLKSLALFDL 111 Query: 75 EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQIL 134 +A + A G K ++ + Q++ R + L+I+DECH++ + ++ + Sbjct: 112 KAGVIAGGWK-EDRQPNIQVAMRQTLERGHRESWFDPDLVIIDECHQVMWSKWAKKR--C 168 Query: 135 THLTKVNPHLR----LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYM 190 L K L L+G TA+P+RL K R + +F I + Sbjct: 169 PRLNKNPDSLTYSPLLIGFTASPWRLSK------------RENFGHIFEVQIASQSPASL 216 Query: 191 IKHGYLTP--------PERLDMPVVQYDFS--RLQAQSNGLFSEADLNRELKKQQRITPH 240 I++GYL P + + + Q DF+ L+ + N + A + + +R+ P Sbjct: 217 IENGYLVPTVYYGIAGADLKGVKIRQGDFAIGELELRCN---APAVVKATVDNYERLCPQ 273 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKA 298 ++ +++A V+HA+ + +AL+T T ER + ++F Sbjct: 274 RLT------------LVYAVGVKHAQSLFQEFTNRGHTSALVTAKTSDEERLQIFDSFSQ 321 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDY 356 + L+NV V +TGFD P V I + RPT+S +LY Q++GRG+RL P GK+DCLILD Sbjct: 322 GDVKILINVGVCSTGFDRPEVSCIILARPTQSKALYVQMIGRGMRLCPQQGKSDCLILDQ 381 Query: 357 AGNPHD-------LYAPEVGTPKGKSDNVPVQVFCPACG 388 GN Y P ++ P CP CG Sbjct: 382 GGNIQRHGSVEEIEYEPLTELELSQNRGEPAVKTCPECG 420 >UniRef50_Q9T1H9 Putative DEAH-family helicase n=1 Tax=Lactobacillus phage phiadh RepID=Q9T1H9_9CAUD Length = 455 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 101/405 (24%), Positives = 182/405 (44%), Gaps = 60/405 (14%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARG-RVLVLAH 57 M +R YQ++ +D + +I P G+GKS+ +AELA+ + G RVL + H Sbjct: 1 MDMPIRSYQKKLIDDLRLSLKHGHKNVLIQSPAGSGKSITMAELAKRITSNGERVLFVVH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +ELV Q + + G+ ++ + VQ+ +R L+ + ++VD Sbjct: 61 RRELVKQIKNTFSSWGVNMNLCEIYM-------------VQTASRRLEKLMTP-NYILVD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKA 176 E H Y++I H N H+ LG TATP RL GKG+ K Sbjct: 107 EAHH---SLAKTYKKINNHFK--NAHI--LGFTATPVRLSGKGF--------------KD 145 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 ++ D + + ++I++ YL P + ++ D ++L+ S G ++ + E + Sbjct: 146 IYDDLVLGPKISWLIENHYLAPYTYYSVNLI--DQTKLKKSSTGDYTHKSI--ENAGKNI 201 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 + +I +FA K + I++ +V ++I + A + G T +RD ++ Sbjct: 202 VYGDVIQSYHKFANNTKAI-IYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAMQ 260 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 +F+ + + LVN + G D P + + +LRPT+S+SL+ Q R +R P K +I+ Sbjct: 261 DFRDGKIKILVNAELYGEGVDVPDCETVIMLRPTQSLSLFIQQSMRCMRYQPDK-QAIII 319 Query: 355 DYAGNPHDLYAPEVG------------TPKGKSDNVPVQVFCPAC 387 D N P++ +G SD + ++ CP C Sbjct: 320 DQVANYTRFGLPDMDRVWTLEDRAKHPQREGGSDGIAIKT-CPNC 363 >UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ08_9DEIN Length = 524 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 102/366 (27%), Positives = 173/366 (47%), Gaps = 43/366 (11%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 + L QQ+A++ L+ + + ++V+ TG GK+L L+R R R L L H +EL Sbjct: 11 LLPLHRVQQQALEQVLSLYESGHSRQLVVMATGVGKTLWSVHLSRHFR-RTLFLVHFEEL 69 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECH 120 + Q+ A ++ G E + +R + VV G + S+ L+ E F L++VDE H Sbjct: 70 LQQSLAAFRRRGGEPGVIWG--RRTDLEADVVVGMIPSLVHRLERVPPERFDLVVVDEAH 127 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKALFR 179 +++++ H P L L+GL+ATP+R G+ + +LF Sbjct: 128 HA---RSRTWERVIRHF---RPRL-LVGLSATPYRTDGRSLL--------------SLFD 166 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + L ++ G+L P+ L+ V D + + EA L+ + +R Sbjct: 167 TLAFSYRLPEAVRDGFLVEPKILE---VSTDQPLSIGRRGADYDEAQLSHAVDTPER-NA 222 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIENFK 297 ++ + EFA RKGV ++AA V HA+ + L ++ A + G+ P +R +E + Sbjct: 223 LLVRTVGEFARNRKGV-VYAAGVRHAEHLAALFRSQGIAAESVYGEDP--KRREKLERHR 279 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL--------APGKT 349 F+ L N +L +D P ++L + RPT S +LY+Q +GR RL KT Sbjct: 280 RGEFQVLTNAMLLVESYDDPTINLGVMGRPTASPTLYEQALGRPARLLREGRAWDGTPKT 339 Query: 350 DCLILD 355 D L +D Sbjct: 340 DYLWID 345 >UniRef50_Q6VSX2 Putative helicase n=3 Tax=Vibrio phage phi16 RepID=Q6VSX2_9CAUD Length = 718 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 114/458 (24%), Positives = 199/458 (43%), Gaps = 77/458 (16%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 +F LR YQQ A + + + ++++ + VLPTGAGK+++ +++ G + H +E+ Sbjct: 1 MFKLRDYQQLAYNRIMAAWEKYRS-VLAVLPTGAGKTVIFSKIIHDHTGAAAAIVHRREI 59 Query: 62 VAQNHAKYQALGLEADIFAAG-----LKRK--ESHGKVVFG--------SVQSVARN--- 103 VAQ + G++ + A +++K + +GK SVQ++ Sbjct: 60 VAQISLSLASFGVKHRVIAPAKTLKTIRKKHFKKYGKSFIDPNAPCGVVSVQTLTSKSTL 119 Query: 104 ----LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + + + +L + DE H + Q I V + +LL +TATP R Sbjct: 120 NNAAIMRWVNQVTLGVYDEGHHYVE------QGIWAKGVHVFENAKLLFVTATPERADG- 172 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPL-RYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 + G + F + + E P ++I++G+L+ P D L Sbjct: 173 ---------VGLGKGEGGFAEVMIEGPTTHWLIENGFLSK-FVYRAPQTDIDLRDLATGK 222 Query: 219 NGLFSEADLNRELKKQQRITPHIISQIMEFA---ATRKGVMIFAATVEHAKEIVGLL--P 273 NG D N + K + + HI+ +++ K ++FA VE A+++ Sbjct: 223 NG-----DFNAKALKARVVESHIVGDVVQHYRKWGENKRAIVFATDVETAEQMAEEFRRA 277 Query: 274 AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSL 333 AA ++G+T ERD L+ F+ + LVNV + GFD P V+ + + RPT+S++ Sbjct: 278 GYTAASVSGETEQGERDHLLAQFEEGAIQVLVNVDLFDEGFDVPAVECVILARPTQSLAK 337 Query: 334 YQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPE-------VGTPKGKSD---------- 376 + Q+VGR LR+ GK +I+D N P +G KG+ Sbjct: 338 FLQMVGRALRIMEGKEYAIIIDPVRNWERHGPPTAVRNWSLMGREKGQGSGGDTIPQKTC 397 Query: 377 ---NVPVQVF---CPACGFANTFWGKTT---ADGTLIE 405 VP + + CP CG N ++ DG L+E Sbjct: 398 DACTVPYEAYYKACPYCGNVNEIADRSAPDKVDGDLVE 435 >UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC93_PROVI Length = 556 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 111/375 (29%), Positives = 183/375 (48%), Gaps = 47/375 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV----IA-ELARLARGRVLVLAHVK 59 LR YQ AV+A + A+ ++ TG GKS+V IA EL R VLVLAH+ Sbjct: 139 LRNYQVSAVEAVEGARAHGQRKALAIMATGLGKSMVANQVIANELDRNPCQEVLVLAHMS 198 Query: 60 ELVAQNHAK-YQALG--LEADIFAAGLKRKESHGKVVFGSVQS----VARNLDAFQGEFS 112 +LV Q A +Q LG ++ G ++ G VVF + QS + ++ + + F Sbjct: 199 DLVRQLEASSWQQLGKGTSTHLWTDG-EQPAYSGGVVFATWQSLFSAMRKDAGSLRERFG 257 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L++VDE H + ++L HL+ P+ L GLTATP+R G Sbjct: 258 LVVVDEAHHA---PSVGFTELLEHLS---PNF-LAGLTATPWR----------------G 294 Query: 173 DEKAL---FRDCIYELPLRYMIKHGYLTPPE-RLDMPVVQYD-FSRLQAQSNGLFSEADL 227 DE++L F + ++ L + ++ G+L + R+ + ++ SR A S GL + ADL Sbjct: 295 DERSLQGLFGEPVFTLDIVAGMQMGFLAAVDYRMLTDGINWEEVSR--ASSQGL-TVADL 351 Query: 228 NRELKKQQRITPHIISQIMEFAATRKG-VMIFAATVEHAKEIVGLLPAE--DAALITGDT 284 N L +R + + A + + F ++EHA+ + L + AL+ Sbjct: 352 NSHLVVPERDIGMVEVICDKMAGIKNPRALAFCRSIEHAERLQPLFASRGVKTALLHSQL 411 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 P +R + F+ L+++ +L G D P V+L+A +R T S ++ Q +GRGLR+ Sbjct: 412 PREQRFKNLSGFRMGHIDLLISIEMLNEGIDIPEVNLVAFMRVTHSRRIFLQQLGRGLRI 471 Query: 345 APGKTDCLILDYAGN 359 + GK + L+LD+ + Sbjct: 472 SKGKENVLVLDFVAD 486 >UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6CMW9_KLULA Length = 690 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 37/372 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL--------ARLARGRVLVLA 56 LR YQQ+ ++ ++ + K + L TG GK+++ + L A +R L+L Sbjct: 53 LRDYQQDCINKCVDAVTQGKMRIGVSLATGGGKTVIFSNLLDRFRSLGAHSSRA-ALILV 111 Query: 57 HVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSL 113 H +EL Q + L + L VV GSV ++ R L+ + + L Sbjct: 112 HRRELAMQAASTISKFMPDLNVQMEMGKLHANLEEADVVIGSVLTMVRRLEEYPPDSIDL 171 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIYQFHYHGMVR 171 +++DE H D Y ++L H P R+ +G +AT R K + Sbjct: 172 IVIDEAHHAVAD---SYVKVLAHFNADTPATRVPVIGFSATFERADKRAL---------- 218 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 A+ + IY + MI +L + V D S++++ N F L++ + Sbjct: 219 ---SAVMDEIIYHKGILEMIDENWLCEG-KFTTVDVGVDLSKVKS-VNSDFQLEGLSKVM 273 Query: 232 KKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 ++ I +++ + K ++FA V H K + +A +TG T Sbjct: 274 NTKE-INEIVLNTYLHKKKLHNLKSTLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTG 332 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ERD ++ +FK + + L+N + T G D P+VD + + RPT+S SL Q++GRGLR Sbjct: 333 ERDSIVSDFKNGKIQVLMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHS 392 Query: 348 KTDCLILDYAGN 359 K C I+D+ + Sbjct: 393 KEHCQIIDFVSS 404 >UniRef50_Q6NDX2 Helicase C-terminal domain n=1 Tax=Leptospira phage LE1 RepID=Q6NDX2_9CAUD Length = 501 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 106/380 (27%), Positives = 179/380 (47%), Gaps = 46/380 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL--ARLARGR-VLVLAHVK 59 + L+ YQ +AV + K P +I++ TG GK++V + + R++RG+ +L LAH + Sbjct: 15 YKLKSYQSKAVGNAVRLLEEGKNP-LIIMATGTGKTVVGSSIIKERISRGKKILWLAHRE 73 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHG----KVVFGSVQSVARN-LDAFQGEF--S 112 EL+ Q ++ + +GL+R E V+ GSV ++ ++ LD+ +F Sbjct: 74 ELIDQAKSQIDNICQ----INSGLERAEHRADLTENVIVGSVPTLRKSRLDSRFSDFRID 129 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +I+DECH D YQ I+ + ++GLTATP G G Sbjct: 130 DIIIDECHHATAD---SYQTIIEFF-QSRFRSNVVGLTATP-------------DGAKGG 172 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTP--PERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 K++F D Y L IK G L ++D + D S ++ + L A + Sbjct: 173 GLKSIFSDIAYNYSLLEAIKDGNLCNLIGVKVDCDI---DLSGIRTVAGDLDQGALDDVM 229 Query: 231 LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAE 288 K I ++ + + + ++F +V A + +L A ++ ++ E Sbjct: 230 SSKILNIAEGVLKETIG-----RRTIVFTVSVRMAVMLEAILKENGIKAKALSAESSVEE 284 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R I F+ +L+N A+ T GFD P ++ + I PT+S + Y Q+VGRG RL+PGK Sbjct: 285 RRYAISQFRRGEITHLLNCALFTEGFDCPEIEAVVIACPTKSRTKYSQMVGRGTRLSPGK 344 Query: 349 TDCLILD--YAGNPHDLYAP 366 + CL+++ Y N H L P Sbjct: 345 SHCLLVEFGYQANQHQLVKP 364 >UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY57_DESOH Length = 787 Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 114/390 (29%), Positives = 168/390 (43%), Gaps = 54/390 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARGRVLVLAHVKELVA 63 +RPYQ A+ TL HF A++++ TG GK+ V+ +L +L +L H+ L Sbjct: 154 VRPYQDVAIHKTLWHFAGGNNRALLLMATGTGKTFVVFQLVWKLLNTSILKRQHILFLTD 213 Query: 64 QNHAKYQA------------LGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF---- 107 +N K QA + + D A G + GKV F + Q++ LD Sbjct: 214 RNSLKDQAYRAFAAFSTDERVTINKDTVANG---QHQVGKVFFANYQNLDEELDGKKIFE 270 Query: 108 ---QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQF 164 Q F L+I+DECHR G + +L H N L++ GLTATP L +G + Sbjct: 271 HYDQDFFDLVIIDECHRSG---FGDWFGVLEHF---NSALQM-GLTATPRELEEG--RRV 321 Query: 165 HYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSE 224 R D F IY L+ I+ GYL P L+ + D ++ Sbjct: 322 LTEEEKRRDTYEYFGAPIYTYSLKQAIEDGYLVP-YLLEERITNVDEEGYTGLDGKHYTT 380 Query: 225 ADLNRELKKQQRITP---HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT 281 A+ R+++ R T + + ++ + ++F HA A + ++ Sbjct: 381 ANFERDIRMPDRTTAIAEDLWEILGQYDLRDEKSIVFCVDDTHAA-----FMAAELRRLS 435 Query: 282 GDTPGAERDVLIE--------NFK---AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 GD A R V E NF + + R V V +LTTGFDAP V I +RP S Sbjct: 436 GDDDYAGRIVRSERNSHQLERNFATVGSTKPRVAVTVDLLTTGFDAPDVKNIVFVRPLRS 495 Query: 331 VSLYQQIVGRGLRLAP--GKTDCLILDYAG 358 LY+Q+ GRG RL K I DY+G Sbjct: 496 AILYKQMKGRGTRLCEDINKRYFTIFDYSG 525 >UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CPV8_9FLAO Length = 496 Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 105/375 (28%), Positives = 170/375 (45%), Gaps = 58/375 (15%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA--RGR-VLVLAHVKEL 61 LR YQ++ + R+ + VLPTG GK+ + + A +GR VL+L EL Sbjct: 2 LRSYQKDLISRLRLAIRQGNRRIIAVLPTGGGKTFTFTHIVKGAVDKGRRVLILTDRIEL 61 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGS-VQSVARNLDA-----FQGEFSLLI 115 + Q Q GL+ AG RK G V++ + V+++AR + F + ++I Sbjct: 62 LRQAGGALQVYGLDPIEIKAG--RKPYLGGVLYTAMVETLARRVKKKDYQHFLQKMQVVI 119 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H D+ Y + R+LG TATP R+G+ +YH + G E Sbjct: 120 IDEAHMRSFDKLFPY---------FSADARVLGFTATPRRMGRKNQLGEYYHHLEVGVE- 169 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS-----RLQAQSNGL---FSEADL 227 + Y++ +G+L P V+ D S R + +N + FS+ L Sbjct: 170 -----------IEYLVDNGFLAEPNYYG---VESDLSGVRTVRGEYDANEVADRFSKTKL 215 Query: 228 NREL-KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDT 284 R + + +RI+P + ++FA+ + ++E++ + DA + Sbjct: 216 YRGVVENWKRISPG------------EKTLVFASNIASSQELITEFTQQGVDARHLDATV 263 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 +R + F L NV +LT GFD P + + + R T+SV LY Q+ GRG R+ Sbjct: 264 SDLDRRNTLAWFDRTPGAVLCNVGILTKGFDQPDIRTVILYRATKSVPLYLQMCGRGSRM 323 Query: 345 APGKTDCLILDYAGN 359 A GKT ILD+ GN Sbjct: 324 AHGKTSFNILDFGGN 338 >UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMW9_FERNB Length = 848 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 168/365 (46%), Gaps = 43/365 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 QQE + N T A++VL TG GK+ +A + RV +AH +E++ Q + Sbjct: 243 QQEVLRELNNTRAEGFTKALVVLATGVGKTF-LAAFDSMQFNRVFFIAHREEILKQAKST 301 Query: 69 YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQGE-FSLLIVDECHRIG 123 ++ + + + K++ +VF SV ++ + N D F + F +I+DE H Sbjct: 302 FEKVRPTSRMGFFTSSGKDTDADIVFASVFTIGKEEYLNDDYFPPDYFDYIIIDEFHHAA 361 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC-- 181 + Y+++L++ NP LLGLTATP R+ D K +F C Sbjct: 362 AE---SYKKLLSYF---NPKF-LLGLTATPERM----------------DGKDVFEICDY 398 Query: 182 --IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 +Y+L L I GYL P + + DFS++ +G + E +L + L +R Sbjct: 399 NVVYDLRLPDAINRGYLVPFHYYGI-YDETDFSKIPI-IDGHYKEDELEKALMLHKR-AD 455 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVL-----IE 294 ++ + +++ RK + F + HA+ + + R+ L IE Sbjct: 456 LVLQKYVKYG--RKRAIGFCVSRNHAEYMADYFNKNGVNACAVYSGEQGRNALPRWEAIE 513 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 K + + V V G D P ++++ LRPTES +++ Q +GRGLR A GK ++L Sbjct: 514 KLKNREIDVIFTVDVFNEGVDIPEIEMVMFLRPTESTTVFIQQLGRGLRKAKGKKYLIVL 573 Query: 355 DYAGN 359 D+ GN Sbjct: 574 DFIGN 578 >UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta RepID=B2AZI6_PODAN Length = 678 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 104/378 (27%), Positives = 165/378 (43%), Gaps = 44/378 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL------ARLARGRVLVLAHV 58 LR YQ+E + A L + I L TGAGK+++ L R L+LAH Sbjct: 49 LRAYQEECIQAVLTSITQGHKRLGISLATGAGKTVIFTHLIDRVTPPNPQATRTLILAHR 108 Query: 59 KELVAQN----HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA---RNLDAFQGEF 111 +ELV Q + Y +E ++ G + + S+QS+ R L + Sbjct: 109 RELVEQAARHCQSAYPNKTVEVEL---GNLQATGFADITVASMQSILSKDRLLKFDPSNY 165 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLT---KVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 L++VDE H I Y +IL H+ K L+G++AT R G Sbjct: 166 KLVLVDEAHHI---VAPGYLKILEHMNLRQKQPDSPTLVGVSATFSR----------SDG 212 Query: 169 MVRG---DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA 225 + G DE +D I + +++ + + T R D+ V+ A G F A Sbjct: 213 LKLGAAIDEIVYHKDYIDMIADKWLSEVVFTTVESRADLSGVRAK----GAGGTGEFETA 268 Query: 226 DLNRELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAE--DAALIT 281 L+R + + + ++ AA R+ ++F + H + DA + Sbjct: 269 SLSRAVNSPE-LNDIVVRAWFAKAAPPKRQSTLVFCVDLSHVAALTERFRHHGIDARYVF 327 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 GDTP ER +E FK + F L+N V T G D P++D + + RPT S +L Q++GRG Sbjct: 328 GDTPAKERAETLEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLARPTRSRNLLIQMIGRG 387 Query: 342 LRLAPGKTDCLILDYAGN 359 +RL GK +C ++D + Sbjct: 388 MRLHEGKENCHVIDMVAS 405 >UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisiae YDR332w n=1 Tax=Candida glabrata RepID=Q6FK44_CANGA Length = 682 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 166/377 (44%), Gaps = 43/377 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---------VLVL 55 LR YQ +A+ + L+ K + L TG GK+++ + L L R R L+L Sbjct: 27 LRDYQNDAIKSCLDAIALGKKRIGVSLATGGGKTVIFSSLINLLRQRNRGNACRFRTLIL 86 Query: 56 AHVKELVAQNHAKYQALGLEADI-FAAGLKRKE-SHGKVVFGSVQSVARNLDAF-QGEFS 112 H +EL Q + + +I G + + S+ V+ SVQS+ R L + +G+ Sbjct: 87 VHRRELAEQAVRTTSRINEDLNIQLEMGNQNCDVSNSDVIVASVQSIIRRLHKYREGDID 146 Query: 113 LLIVDECHRIGDDEESQYQQILTHL--TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 L+I+DE H D Y+++L H N + ++G +AT R K + Sbjct: 147 LIIIDEAHHAAAD---SYKKVLKHFRCDTANTRIPVIGFSATFERYDKKSL--------- 194 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQYDFSRLQAQSNGLFSEAD 226 K F + +Y + MI +L + RL++ + + S L + F Sbjct: 195 ----KESFDELVYHRGIIEMIDDNWLCESKFTTVRLEVDLSKIPTSTLTSD----FQTGA 246 Query: 227 LNRELKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAE--DAALITG 282 L+R L Q + I + +E K ++F + H + + A ++ Sbjct: 247 LSRLLNTQT-VNSIIYNSYLEKRKENNIKSSLLFGVDINHIECLERYFNERGIKAKAVSS 305 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 T +R I + K+ L+N + T G D P++D I + RPT+S +L Q++GRGL Sbjct: 306 KTSVEDRQKAIRDIKSGELEVLLNCGIFTEGTDIPNIDCILLCRPTKSRTLLVQMIGRGL 365 Query: 343 RLAPGKTDCLILDYAGN 359 RL K C I+D+ G+ Sbjct: 366 RLHHSKEYCHIIDFVGS 382 >UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KCW6_CRYNE Length = 706 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 105/396 (26%), Positives = 171/396 (43%), Gaps = 66/396 (16%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---------------ARL 47 TLR YQ+ A+ A L+ + + PTG+GK+ + L R Sbjct: 64 ITLRSYQEAAISACLDALQSGSRRLGVSSPTGSGKTTIFLSLIPRVPFYASRGNDSHPRD 123 Query: 48 ARGRVLVLAHVKELVAQNHAKYQ-ALGLEADIFAAGLKRKESH-GKVVFGSVQSVAR--N 103 +G+ L++ + EL Q + LG E I KR S V + Q++ Sbjct: 124 GKGQTLIIVNSVELAEQTQKSAERLLGDEWTIEIEQSKRVASGLADVTIATYQTLNNPDR 183 Query: 104 LDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTK----------VNPHLR-----LL 147 L F +F L+IVDE H Y ++L + + +PHL ++ Sbjct: 184 LSKFDPSKFKLVIVDEAHH---SAAPSYLRLLHYFNEDVKIPKSPQAPSPHLHGFKVPII 240 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLDM 204 G +AT R D+ +L F + ++ ++ M+ +L P + + Sbjct: 241 GFSAT----------------FSRADQHSLHSAFEEIVFHRDMKDMLSEKHLAPAK---L 281 Query: 205 PVVQYDFSRLQAQ-SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 +V+ D + + S+G F A L R++ + I I+ + A+ R+ ++F +E Sbjct: 282 TIVKADLELDEVETSSGDFKNAALARKVNTTE-INELIVRTYLHRASERRSTLVFCVDLE 340 Query: 264 HAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDL 321 H + + DA ++ + R I F F L+N VLT G D P +D Sbjct: 341 HVSALTQTFRSAGIDARSVSSKSKPEMRKATIAAFGKGEFPVLINCEVLTEGTDIPQIDC 400 Query: 322 IAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILD 355 I + RPT+S +L Q+VGRGLRL+P GKTDC I+D Sbjct: 401 ILLARPTQSRNLLVQMVGRGLRLSPESGKTDCHIID 436 >UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK35_9GAMM Length = 1066 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 172/386 (44%), Gaps = 54/386 (13%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA--------ELARLARGR 51 F LRPY QQE ++ R +++ TG GK+++ A E A R Sbjct: 331 FFDLRPYAFQQEILEDIRRERRSGIDRHLVIAATGTGKTMIAAFDYRRFAREQADKGRPS 390 Query: 52 VLVLAHVKELVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAF 107 +L +AH +E++ Q A ++ + + D+ G + S + +F +V S AR+LD Sbjct: 391 LLFIAHREEILRQAMASFRQVLQDHEFGDVLVGGAR--PSQDRHLFCTVASWNARDLDRL 448 Query: 108 QGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 E F +++DE H YQ+IL H V P LLGLTATP R I Q Sbjct: 449 DPEHFDYVVLDEAHH---SSAGSYQRILEH---VRPKC-LLGLTATPERTDADDIRQ--- 498 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGY--LTPPERLDMPVVQ-----YDFSRLQAQSN 219 H R + D I R ++ Y + E +D+ V YD L+ Sbjct: 499 HFGQRYTHEIRLPDAIER---RLLVPFHYFGVADHESVDLSRVSWRRGGYDAEELEGVFT 555 Query: 220 GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED- 276 G + AD ++ Q E A V + F + HA+ + A+ Sbjct: 556 GNRARADW-------------VLQQAHEHATDLGSVRGLGFCISRAHARFMAEYFSAKQV 602 Query: 277 -AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 +A++TGD+ ER + + + R R++ V + G D P VD + +LRPTES+++Y Sbjct: 603 PSAVLTGDSSDHERKSIQRDLREGRIRFIFTVDLYNEGVDLPEVDTVLLLRPTESLTVYL 662 Query: 336 QIVGRGLRLAPGKTDCLILDYAGNPH 361 Q +GRGLRL GK +LD+ H Sbjct: 663 QQMGRGLRLHEGKPHLTVLDFVAPQH 688 >UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax=Actinomycetales RepID=A1SJ00_NOCSJ Length = 558 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 165/370 (44%), Gaps = 41/370 (11%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAH 57 + LRPYQ EA + A++VL TG GK++V E+ R R+LV+AH Sbjct: 137 YELRPYQLEAAERIQQDLE-DTNRALLVLATGLGKTVVGGEVIRRHLESHPDARILVVAH 195 Query: 58 VKELVAQ-NHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLI 115 +KELV Q A ++ L G R S V ++ SV L SL++ Sbjct: 196 MKELVEQLEKALWRHLDKSVPTQVLTGDTRPTSFEGVTVATIDSVL-GLVRTDWRPSLIM 254 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H +G E + Q+L R G+TATP+R K D Sbjct: 255 IDETHHVG--ETGMFAQLLDECQDA----RQFGVTATPWRGDKF-------------DIT 295 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPE-RLDMPVVQYDFSRLQAQSNGLFSEADLNREL--- 231 + F Y L + + GYL + R+ + + +DF R A +G +S +LN+ L Sbjct: 296 SRFGQPSYSLGIAEGMADGYLAQVDYRMYVDNLDWDFVR-HASEHG-YSIKELNKALFLP 353 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED-----AALITGDTPG 286 ++ + I E R ++F T+EHA+ + LL D A+ + Sbjct: 354 QRDEEIVDEFRQAWREIRDPR--AIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSR 411 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +R +L+ F+ R + V V G D P V+LIA LR T S ++ Q +GRGLRL Sbjct: 412 QQRQILLNAFRLGRVPIITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLRE 471 Query: 347 GKTDCLILDY 356 GK +LD+ Sbjct: 472 GKESLKVLDF 481 >UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=A4QW28_MAGGR Length = 643 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 163/375 (43%), Gaps = 57/375 (15%) Query: 3 FTLRPYQQEAVDATLN-----HFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAH 57 +LR YQ+E + A L+ H R + P + T + L+LAH Sbjct: 43 ISLRSYQEECIQAVLSSLENGHKRIDRVPPISKTAT-----------------QTLILAH 85 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHG--KVVFGSVQSVARN--LDAFQGE-FS 112 +ELV Q A++ + S G + SVQS+ + F F Sbjct: 86 RRELVEQ-AARHCTNAYPDKTVEIEMGSTHSSGLADITVASVQSIISGDRMAKFDASRFK 144 Query: 113 LLIVDECHRIGDDEESQYQQILTHL-----TKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 L++VDE H I Y + L H + +PHL +G++AT R + Sbjct: 145 LVLVDEAHHI---VAPGYLKTLAHFGLASKQQTSPHL--VGVSATFSR----------FD 189 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV-VQYDFSRLQAQSNGLFSEAD 226 G+ G A + +Y MI +L+ + L V D SR + +N F ++ Sbjct: 190 GLRLG---AAIDEIVYHKDYVDMIGDKWLS--DVLFTTVESSADISRARTGANADFLPSE 244 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDT 284 L+R + + + + M A RK ++F + H + DA +TGDT Sbjct: 245 LSRAVNTNE-VNEITVRSWMAKAPGRKSTLVFCVDLAHVNGLTQKFREFGIDARFVTGDT 303 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ER +E F+A +F LVN V T G D P++D + + RPT+S +L Q++GRG+RL Sbjct: 304 HKVERSERLEEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLARPTKSRNLLVQMIGRGMRL 363 Query: 345 APGKTDCLILDYAGN 359 PGK +C I+D + Sbjct: 364 HPGKKNCQIIDMVSS 378 >UniRef50_C3U2J2 Putative helicase n=1 Tax=Lactococcus phage P087 RepID=C3U2J2_9CAUD Length = 508 Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 165/377 (43%), Gaps = 65/377 (17%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVI-----AELARLARGRVLVL 55 M F LRPYQQ+ VD + + + VL TG GKS+V+ A LA + V Sbjct: 1 MTFQLRPYQQDLVDELMQY---KDSNCCAVLATGGGKSVVMRGFVEALLADDKTKTICVT 57 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLI 115 HV+EL+AQ + L +E F S+Q L+ + ++I Sbjct: 58 VHVRELLAQLEETLKGLPVE------------------FVSIQ----KLNKMDKVYDVII 95 Query: 116 VDEC-HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR---------LGKGWIYQFH 165 VDE H + S Y+++L K G TA P R + ++F Sbjct: 96 VDEAVHAMA----STYRKVLAENAKT-----YFGFTALPLRGLIPDMSPQVANKDTWKFS 146 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL-FSE 224 G+ + D+ F + L + I GYLTP E + DF Q F+E Sbjct: 147 LTGL-KSDK--CFENFAVSLSTKECIDRGYLTPFEIIS----GRDFHIEQVNKRVHDFNE 199 Query: 225 ADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITG 282 ++N L ++ I+E + K + +F+ ++ + ++ +L A ++ Sbjct: 200 QEVNDALTVKE-----CHDYIVETIGSDKTI-VFSHSINYGSKLAKMLQDSGITAQFVSS 253 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 + ER +++FK R + L+ V + GFD P D + + RPT SVS++ Q +GR L Sbjct: 254 KSKKRERTQYVKDFKEHRTQVLIGVNIFIEGFDVPACDSMYMFRPTRSVSVWFQSIGRVL 313 Query: 343 RLAPGKTDCLILDYAGN 359 RLA GKT + DY GN Sbjct: 314 RLAEGKTIAKVHDYVGN 330 >UniRef50_B9CV28 Phage deah-family helicase n=1 Tax=Staphylococcus capitis SK14 RepID=B9CV28_STACP Length = 445 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 97/408 (23%), Positives = 180/408 (44%), Gaps = 61/408 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 + LR YQ+E ++ + ++ P G+GK++ ++EL R A + RVL + H Sbjct: 1 MIPLRDYQEELLNGLYKSIANNNKNIMVQSPAGSGKTVTMSELTRRANNKKNRVLCIVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-FQGEFSLLIVD 117 +E+V Q +A + D G+ VQ++A + + ++I+D Sbjct: 61 EEIVNQIKNTMEANDVNWDYCEVGM-------------VQTIANRIKKNLIQKPDIIIID 107 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKA 176 E H + YQ+I++ P ++G TATP+RL G+G+ K Sbjct: 108 EAHHALSN---TYQKIISSF----PDTYIIGFTATPYRLNGQGF--------------KE 146 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 F+D + ++++I+ L P + + ++ ++ +L+ Q G FS+ + K + Sbjct: 147 SFQDIVLGKSVKWLIEKKRLAPYKYFSIDLINHE--KLKKQR-GEFSQKSIEEAFNK--K 201 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIE 294 I ++ ++A K + ++A VE +K + + +A + G+ ER +++ Sbjct: 202 IYGDVLKNYEKYAKGLKTI-VYAYNVESSKRVAEQFKNKGYNAYHLDGNAKTHERLEVVQ 260 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 F+ L N + GFD P + +LRPTES+SL+ Q R +R K + +I+ Sbjct: 261 KFRDGEIDILTNAELFGEGFDIPDCHCVILLRPTESLSLFIQQTMRAMRYQLNK-EAIII 319 Query: 355 DYAGN---------PHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTF 393 D N D A G P + +P +V CG + F Sbjct: 320 DLVNNWSTHQLPDSDRDWVAYFEGKPPREKSEIPAKV----CGAEDCF 363 >UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFS4_EXIS2 Length = 1052 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 95/361 (26%), Positives = 169/361 (46%), Gaps = 54/361 (14%) Query: 22 RHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFA 80 + +T A+++ TG GK+ + A ++ + RVL +AH +L++Q ++ + + D Sbjct: 315 KQQTKAMVIAATGTGKTYLAAFDVKQFDAKRVLFVAHRGKLLSQAEETFKKIFTDGD--- 371 Query: 81 AGLKRKESHGK-----VVFGSVQSVARNLDAFQ---GEFSLLIVDECHRIGDDEESQYQQ 132 A R +++ K +F ++Q+ ++ + Q F +I+DE H + YQ+ Sbjct: 372 ATFGRYQANQKDLDKQFIFATIQTFSKEIHLEQFDPNTFDYIIIDEFHHAASES---YQK 428 Query: 133 ILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIK 192 IL + T P LLG+TATP R+ I++ H + YE+ L + Sbjct: 429 ILNYFT---PQF-LLGITATPERMDGLNIFKLVDHNIA------------YEIRLYDALA 472 Query: 193 HGYLTP--------PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 LTP E +D V+ Q NGL+ E DL L++ R T +I+ Sbjct: 473 QDLLTPFHYFGIQDDEAIDYEVI--------PQKNGLYIEKDLVEALERSSR-TEYILEM 523 Query: 245 IMEF--AATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQR 300 + +F + T + + F ++HA+ + ++ IT AER+ I+ + + Sbjct: 524 MTKFGHSGTARVGLGFCVNIDHAEYMAAEFNKHQIESLAITSKQTEAEREHAIQRLEDDQ 583 Query: 301 --FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 ++ V + G D P ++++ LRPTES +++ Q +GRGLR K ILD+ G Sbjct: 584 DPLSFIFTVDLFNEGVDIPKINVMLFLRPTESPTIFIQQLGRGLRKHKSKEYVTILDFIG 643 Query: 359 N 359 N Sbjct: 644 N 644 >UniRef50_B3RW31 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RW31_TRIAD Length = 607 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/325 (26%), Positives = 147/325 (45%), Gaps = 27/325 (8%) Query: 50 GRVLVLAHVKELVAQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVARN----L 104 +VLVLAH +EL+ Q + +L ++ G ++ VV SV ++ R + Sbjct: 22 NKVLVLAHREELIDQAYRHLCSSLPQKSVDIEQGKRQASPDADVVVASVPTLGRKYSSRI 81 Query: 105 DAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 + F +F L+++DE H + Y ++L H LL P + G Sbjct: 82 ERFDPNQFKLIVIDEAHH---SSATSYLRVLGHFNA------LLNDETLPIKNKDGTRSD 132 Query: 164 FHYHGMVRGDEKA-------LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA 216 G +++ ++ Y L M + +L P + D S++ A Sbjct: 133 ILVWGCTGTLQRSDGVGFGNVYEQVSYSRTLFQMWEEKWLAPINAYSIHT-DADLSKV-A 190 Query: 217 QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL--LPA 274 ++ F + L +++ +R I+ + K ++F+A +HAK++ L Sbjct: 191 KNQFDFVVSQLVKQINTPER-NNTIVKAWLNHKDNFKSTLVFSANRQHAKDLTEAFRLSG 249 Query: 275 EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 ++A L+ G TP +R L+ NFK Q+F ++N V T G D P +D I + RPT S +L+ Sbjct: 250 KEAHLVDGQTPSDDRAELVSNFKEQKFPVMINCGVFTEGTDIPCIDCIILARPTRSSTLF 309 Query: 335 QQIVGRGLRLAPGKTDCLILDYAGN 359 QQ+VGRGLR P K C + D N Sbjct: 310 QQMVGRGLRTFPDKEYCTVFDCFDN 334 >UniRef50_B9KN75 ABC-type metal ion transport system ATPase component-like protein n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KN75_RHOSK Length = 471 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 119/415 (28%), Positives = 184/415 (44%), Gaps = 74/415 (17%) Query: 32 PTGAGKSLVIAEL--ARLARG-RVLVLAHVKELVAQNHAKYQALGL-EADIFAAGLKRKE 87 PTG GK+LV A++ LA+G R + A L+ Q ++ G+ + + A R + Sbjct: 18 PTGFGKTLVAAKIIEGALAKGNRAVFAAPAISLIDQTVTAFENEGIRDIGVMQANHPRTD 77 Query: 88 SHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLL 147 KV SVQ++AR SL+IVDECH +G D ++ L P + Sbjct: 78 RLAKVQVASVQTLARREIP---PASLVIVDECH-LGFD-------VIHRLMDERPDAFFI 126 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT-----PPERL 202 GL+ATP+ G G +Q D + + + +I+ G+L+ P Sbjct: 127 GLSATPWAKGMGVRWQ----------------DLVIPVTIGELIEGGWLSQFVVYAP--- 167 Query: 203 DMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATV 262 D+P D ++ Q+ G + EA L ++ ++ ++++ + R + FA Sbjct: 168 DVP----DLRGVKVQA-GDYVEAQLA-DVMGDAKLVGNVVATWLARGEDRP-TLCFAVNR 220 Query: 263 EHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVD 320 HA ++ + AA + G+T ER L F+ R + +V +TTG D P V Sbjct: 221 AHAAQLQAQFERQGVAAAYVDGETDAIERQRLNRLFRDGSVRVICSVRTMTTGIDLP-VS 279 Query: 321 LIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP----------HD-LYAPEVG 369 + PT+S L+ Q +GRGLR+ PG DCLILD+AGN HD L A E G Sbjct: 280 CVIDAAPTKSEMLHVQKIGRGLRVNPGTEDCLILDHAGNSLRLGLVTDIHHDRLDATEKG 339 Query: 370 TP---KGKSDNVP----------VQVFCPACGFANTFWGKTTA-DGTLIEHFGRR 410 K K++ +P CP CG A DG L+E G++ Sbjct: 340 AKQEHKPKAEKLPKPCSQCGVLHAGKVCPGCGHERRPVANVEAKDGELVEVAGKK 394 >UniRef50_A4BVK1 Type III restriction enzyme, res subunit n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BVK1_9GAMM Length = 531 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 112/378 (29%), Positives = 158/378 (41%), Gaps = 50/378 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-----LVIAELARLARGRVLVLAH 57 + L YQ+E V T + A++ +PTG+GK+ + L + V LA+ Sbjct: 126 YGLFDYQREIVLRTQHVLEEPPRKALLHMPTGSGKTRTAMHFIARHLQKYGPTLVCWLAN 185 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQS---VA------------- 101 EL+ Q + + + G+ R V GSV+ VA Sbjct: 186 SGELLEQAADEAERSWRMLGDRSIGIYRFWGDHSVDLGSVRDGVLVAGFAKMHAAYLREQ 245 Query: 102 RNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW- 160 L A SL +VDE H+ Y+ ++ L P LLGLTATP G+ W Sbjct: 246 NTLIALGDRSSLTVVDEAHQA---IAPTYRSVIDALYTKRPVNALLGLTATP---GRSWD 299 Query: 161 -------IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQY 209 + F G EK Y P+ ++I GYL P D P+ Sbjct: 300 DAGADKELSDFF------GGEKVTLTVKDYPDPVSFLIAEGYLANPRFRTLAFDGPIPLS 353 Query: 210 DFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIV 269 G SE L R L + II+ I E + + +++F A+V HA + Sbjct: 354 KKDEAVLDEGGELSEEVL-RVLSESSERNYKIITAIEELSVRHRRIIVFGASVPHAYLLT 412 Query: 270 GLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLV--NVAVLTTGFDAPHVDLIAIL 325 G+L A D +IT +TP A R+ I FK+ +V N VLTTGFDAP I Sbjct: 413 GILIARGHDTKVITSETPIARRERYIRQFKSDNPYPMVLCNYGVLTTGFDAPKTSAAVIA 472 Query: 326 RPTESVSLYQQIVGRGLR 343 RPT S+ LY Q+VGR +R Sbjct: 473 RPTRSLVLYSQMVGRAIR 490 >UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B1XZH6_LEPCP Length = 1058 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 107/377 (28%), Positives = 173/377 (45%), Gaps = 40/377 (10%) Query: 2 IFTLRP--YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA----ELARL--ARGRVL 53 F L+P YQQE ++ + + ++V TG GK++V A R+ R R+L Sbjct: 326 FFDLQPKTYQQEMLEQLITERSHGRNRNLLVAATGTGKTVVAAFDYRNTCRVEGGRPRLL 385 Query: 54 VLAHVKELVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAFQG 109 +AH +E++ Q Y+ + + D+ G + +F ++ SV +R+L G Sbjct: 386 FVAHREEILRQALRTYREVLRDPEFGDLLTGG--NQPERWDHLFATIDSVTSRDLVTTVG 443 Query: 110 --EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 + ++VDECHR+ D + + V P + LLGLTATP R I Q+ + Sbjct: 444 ADHWHTVVVDECHRLAADRFDAF------VKSVRPSV-LLGLTATPERSDGQPIAQY-FD 495 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 G R + L L+ + Y + D V +D + + L + D+ Sbjct: 496 ARPDGSPAIELR-LWHALDLQLLAPFEYYACDDGTDFSAVPWDKPGEREAVDKLVTGNDV 554 Query: 228 NRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIV-----GLLPAEDAALITG 282 + R+ + ++ A+T + + +F +V HA+ + LPA A + G Sbjct: 555 ------RARLVVNEWRRLASDASTSRAI-VFCVSVAHAEFMTDRFNRAGLPA---ACVVG 604 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 T ER + + LV V + G D P VD + +LRPT+S L+QQ +GRGL Sbjct: 605 TTAIEERRRAPQRLLSGELCALVTVDLYNEGIDLPMVDTLLLLRPTQSPVLFQQQIGRGL 664 Query: 343 RLAPGKTDCLILDYAGN 359 RLAPGK CL+LD+ G Sbjct: 665 RLAPGKESCLVLDFVGQ 681 >UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax=Chlorobium limicola DSM 245 RepID=B3ECY7_CHLL2 Length = 967 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 161/351 (45%), Gaps = 50/351 (14%) Query: 27 AVIVLPTGAGKSLVIAELARL----ARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG 82 ++VL TG GK+ + A A+ G VL L H E++ Q+ K+ + +A +G Sbjct: 164 GLVVLATGIGKTYLAAFDAKRFCAPTGGNVLFLVHNTEILKQSAEKFANVWPDA---TSG 220 Query: 83 L---KRKESHGKVVFGSVQSVAR-NLDAF--QGEFSLLIVDECHRIGDDEESQYQQILTH 136 L K +V+F S+Q++A+ N A F +I+DE HR + Y++ILT+ Sbjct: 221 LYYGTEKTYEVQVLFASMQTMAKDNHQALFDSTHFDYIIIDESHRT---PTASYKKILTY 277 Query: 137 LTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYL 196 P LLG+TATP RL + + F+ + +V +E+ R I G+L Sbjct: 278 F---KPKF-LLGITATPDRLDEQEVLPFYDNNLV------------FEMGQREAIDSGFL 321 Query: 197 TP------PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAA 250 P + +D ++Y+ R Q DL++ L +R II + E A Sbjct: 322 VPFKYYGLKDDIDYTNIRYNGYRYNVQ--------DLDKLLMIDKR-DNGIIEKFNELAT 372 Query: 251 TRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVA 308 ++G+ F +++HA+ A I ER+ + F+ Sbjct: 373 VKRGIG-FCVSIKHAERCAKKFRDAGFSAIAIHSKMGKEEREDAVARFRKGDIDLAFVRD 431 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 V G D P V+ + LRPTES +++ Q +GRGLRL+P K +LD+ GN Sbjct: 432 VFNEGVDFPDVETLLFLRPTESKTIFIQQLGRGLRLSPRKEALAVLDFIGN 482 >UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q759H6_ASHGO Length = 691 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 102/374 (27%), Positives = 161/374 (43%), Gaps = 43/374 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-------RVLVLAH 57 LR YQQ +D L + + L TG GK++V A L R R LVL H Sbjct: 49 LREYQQACIDECLRCIADGRRRIGVSLATGGGKTVVFANLLNALRQEQQGRRFRALVLVH 108 Query: 58 VKELVAQ--NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFSLL 114 +EL Q K A L + A + VV SV S+ R LD + +G + Sbjct: 109 RRELAQQATRTLKRCAPELNVQVEMASQRANLETADVVVASVLSLIRRLDQYPRGSIDAI 168 Query: 115 IVDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 I+DE H + Y ++L HL TK + + ++G +AT R Sbjct: 169 IIDEAHHAAAE---SYLRVLEHLGAGTK-DTKVPVIGFSAT----------------FER 208 Query: 172 GDEKALFR---DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 D KAL R + ++ + MI +L R V D ++ S F + L+ Sbjct: 209 ADRKALSRAMDEIVFHKGILEMIDEKWLCEG-RFTTVDVDADLDGVE-MSGSDFQLSSLS 266 Query: 229 RELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAE--DAALITGDT 284 + + +Q + +++ + K ++F V H K + L A +A +T T Sbjct: 267 QVMNTEQ-VNRIVLNTYLHKRREHKLKSALLFGIDVSHVKSLCKLFQANGIEAQYVTAKT 325 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ERD ++E+F+ L+N + T G D P++D + + RPT S +L Q++GRGLR Sbjct: 326 RPTERDSIVEDFRRGDIEVLMNCGIFTEGTDIPNIDCLLLCRPTRSRTLLVQMIGRGLRQ 385 Query: 345 APGKTDCLILDYAG 358 K C ++D+ Sbjct: 386 HHSKDHCHVIDFVS 399 >UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5J4_SLAHD Length = 974 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 93/358 (25%), Positives = 171/358 (47%), Gaps = 47/358 (13%) Query: 24 KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG 82 K A+++ TG GK+ + A ++ + +VL + H ++ ++ +Q + L + ++ G Sbjct: 240 KNRALLISATGTGKTYLSAFDVKAFSPKKVLYVVHRNKIARKSMESFQNV-LSSKEYSFG 298 Query: 83 L---KRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGDDEESQYQQILTH 136 + K + + +F +VQ++A+ NL+ F + EF +IVDE HR G + Y + + + Sbjct: 299 MFSGSEKTTDARCIFATVQTLAKRENLEKFAKDEFDYIIVDEVHRAG---ANSYLRFMDY 355 Query: 137 LTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYL 196 +LG++ATP R IY+ H + YE+ L +++ L Sbjct: 356 FEAE----FILGMSATPERTDDFDIYELFDHNIA------------YEIRLNDALEYNLL 399 Query: 197 TPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV- 255 P + V D L+ +A NR L +R+ H+++ I ++ + + V Sbjct: 400 VPFHYFGVAEVCIDGELLE-------EDASFNR-LVSDERVR-HVLNAINKYGYSGERVH 450 Query: 256 -MIFAATVEHAKEI---VGLLPAEDAALITGDTPGAERDVLIENFKAQR-----FRYLVN 306 ++F + +E A+E+ L + AL +G T A RD IE + Y+ Sbjct: 451 GLVFCSRIEEAEELSQKFNNLGYKTVAL-SGSTSEALRDDAIERLEQDEDDENALDYIFT 509 Query: 307 VAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 V + G D P V+ + +LRPT+S ++ Q +GRGLR + GK +++D+ GN Y Sbjct: 510 VDIFNEGIDIPAVNQVVMLRPTQSAIVFVQQLGRGLRTSEGKEYVVVIDFIGNYQKNY 567 >UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Lactobacillales RepID=Q1WTK7_LACS1 Length = 986 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 41/353 (11%) Query: 24 KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKY-QALGLEADIFAA 81 +T +I+ TG GK+ + A ++ R L +AH ++++ ++ + + LG + Sbjct: 239 ETKGLIISATGTGKTYLAALDVKNYNPKRFLFVAHREQILKKSLDSFHKVLGGDKKTNYG 298 Query: 82 GL--KRKESHGKVVFGSVQSV--ARNLDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTH 136 L K + K +F +VQ++ A NL+ F+ EF +++DE H +G Y ++L + Sbjct: 299 ILSGNAKNTDAKYLFATVQTLSKAENLNQFKRDEFDYILIDEAHHVG---SKIYGKLLDY 355 Query: 137 LTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIYELPLRYMIKHGY 195 T P LLG+TATP R IY+ F Y+ YE+ L+ ++ Sbjct: 356 FT---PDF-LLGMTATPERSDDKNIYELFDYN-------------VPYEIRLQEALEEEM 398 Query: 196 LTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV 255 L P + + Y+ + +N + L ++R+ +++ Q + + Sbjct: 399 LVPFHYIGVSDYTYNGEVIDDNTNLKY--------LVSEERV-KYVVEQSKYYGYDGDVL 449 Query: 256 --MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLT 311 ++F + E A EI LL + +++G+ +R+ IE K YLV V + Sbjct: 450 HGLVFVSRKEEADEIAKLLTKNGYPSQMLSGEDSQEQREQAIEKLKNGELTYLVTVDIFN 509 Query: 312 TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 G D P ++ + ++R TESV ++ Q +GRGLR A GK ++D+ GN + Y Sbjct: 510 EGIDIPFINQVIMMRKTESVIVFVQQLGRGLRKAQGKEYLTVIDFIGNYKNNY 562 >UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii RepID=B3CKZ8_PROFR Length = 1054 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 109/381 (28%), Positives = 181/381 (47%), Gaps = 46/381 (12%) Query: 6 RPYQQEAVDATLNHFRR---HKTPAVIVLPTGAGKSLVIA-ELARLARGR-----VLVLA 56 +P+Q+ +D L H R+ H+ ++V TG GK+++ A + RL + +L +A Sbjct: 312 QPHQRIMLD-DLAHERQQDFHRN--LVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVA 368 Query: 57 HVKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVAR-NLDAFQ-GEFS 112 H KE++ Q + Y + +A+ G + H + VF SVQS++R NLDA F Sbjct: 369 HRKEILEQARSTYAHVLNDANFGELLVGGEHPTEH-RHVFASVQSLSRMNLDALDPTAFD 427 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++++DE H E + Y++IL H P LLGLTATP R + F G Sbjct: 428 VMVIDEFHHA---EAATYRRILDHF---QPR-ELLGLTATPERADGVNVASFF------G 474 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA--QSNGLFSEADLNRE 230 D A EL L + L P VQ+D + L+ S G + +L+R Sbjct: 475 DRIA------SELRLWDALDGDLLAPFHYF----VQWDDTDLRGVKASGGEYQAGELSRL 524 Query: 231 LKKQQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 + +++ + TR + F +VEHA + +L + ++G + Sbjct: 525 YTDNDGRSRLVLAAMRHRILDPTRMKALAFCVSVEHAHYMADVLSQAGVPSVALSGQSSR 584 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 R+ I + + R L V + G D P +D + +LRPT+S +++ Q +GRGLR AP Sbjct: 585 EIREAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAP 644 Query: 347 GKTDCLILDYAGNPHDLYAPE 367 GK+ +LD+ G+ + ++ E Sbjct: 645 GKSVLTVLDFVGHQREDFSFE 665 >UniRef50_C3JHT4 Helicase conserved domain protein (Fragment) n=5 Tax=Actinomycetales RepID=C3JHT4_RHOER Length = 429 Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 116/396 (29%), Positives = 179/396 (45%), Gaps = 50/396 (12%) Query: 4 TLRPYQQEAVDATLNHFRRHKTP--AVIVLPTGAGKSLVIAE-LARLAR------GRVLV 54 +L YQ+E + F ++ TP A++ LPTGAGK+ V AE + R G +L Sbjct: 23 SLHKYQEE-IAGRFVEFLQNPTPQRAMLSLPTGAGKTRVAAEGVIRWIHDSDAPIGPILW 81 Query: 55 LAHVKELVAQNHAKY----QALGLEADIFAAGLKRKESHGKVVFGSVQSVARN------L 104 +A EL Q + + +G + + L S V + VA + L Sbjct: 82 IAQTGELCEQAVQSWKFVWERVGPKQTLVIDRLWSTNSATPVTGRAHLVVATDAKLRSCL 141 Query: 105 DAFQGEF----SLLIVDECHRIGDDEESQYQQILTHL--TKVNPHLRLLGLTATPFRLGK 158 D E+ SL+IVDE H QY +IL HL T+ L+GLTATPFR Sbjct: 142 DTDDYEWLRDASLVIVDEAHVASS---PQYTRILDHLGLTRYKNSRPLVGLTATPFRNDP 198 Query: 159 GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER-----LDMPVVQYDFSR 213 + GD++ L + E P+ + + G L E DM + ++ + Sbjct: 199 ---ERTRLLAQRFGDQR-LDMGILGENPISRLQELGVLAQVEHRQLKGADMALHTHELAE 254 Query: 214 LQA------QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 ++ + NG ++ + L + +I +I + V++FA +VEHAK Sbjct: 255 MEKFRADPDEFNGFLPKS-FEQRLADDEGRNKVLIEEITKLPPDWP-VLVFATSVEHAKF 312 Query: 268 IVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAIL 325 + L + + I TP ++R I+ F+ ++ R + N VL+ GFDAP + I Sbjct: 313 LAAKLSDKGIRSVAIDSATPTSQRRKHIDEFRNKKIRVITNYGVLSQGFDAPATRAVVIA 372 Query: 326 RPTESVSLYQQIVGRGLR--LAPGKTDCLILDYAGN 359 RP S ++YQQ++GRGLR GK CLILD N Sbjct: 373 RPVYSANVYQQMIGRGLRGVRNGGKESCLILDMRDN 408 >UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax=Fusobacterium RepID=Q8R5Z3_FUSNN Length = 942 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 162/355 (45%), Gaps = 41/355 (11%) Query: 16 TLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHAKYQAL-- 72 L R+ A+++ TG GK+ + A + A+ + +L +AH K ++ ++ YQ + Sbjct: 220 NLEETRKENDRALLISATGTGKTYLSAFDVKQAKAKKILFVAHRKVILERSKISYQRILK 279 Query: 73 GLEADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAF-QGEFSLLIVDECHRIGDDEESQ 129 +IF + + +VVF VQ++ +NL+ F + F +I+DE H G Sbjct: 280 NKNMEIFDNNFQINDK-DEVVFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGG---AKT 335 Query: 130 YQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIYELPLR 188 YQ I + P LLG+TATP R IYQ F+Y+ YE+ L+ Sbjct: 336 YQSIFEYFK---PKF-LLGITATPERTDDFNIYQLFNYN-------------VAYEIRLQ 378 Query: 189 YMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII--SQIM 246 +K L P + + D + +++ ++L R+ HI+ S+ Sbjct: 379 DAMKEELLCPFHYFGISDIVIDGESIDEKTSL--------KKLTSDTRV-KHILENSKYY 429 Query: 247 EFAATRKGVMIFAATVEHAKEIVG--LLPAEDAALITGDTPGAERDVLIENFKAQRFRYL 304 ++ R +IF + VE AK +V L A ++ + ER+ I + Y+ Sbjct: 430 SYSGERLSCLIFVSKVEEAKILVEKFLEQGVKAIALSSENSDNEREEAIRKLEQGEIEYI 489 Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 +V + G D P V+ + +LRPT S +Y Q +GRGLR K ++LD+ GN Sbjct: 490 TSVDIFNEGVDIPCVNQVILLRPTTSAIVYIQQLGRGLRKHKNKDYTVVLDFIGN 544 >UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA helicase domain n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GIH0_ANOFW Length = 1059 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 169/362 (46%), Gaps = 33/362 (9%) Query: 10 QEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q+ L H R++ T VI+ TG GK+ + A ++ ++L +AH +EL+ + Sbjct: 316 QKKALKNLEHTRKNGNTKGVIIAATGTGKTYLAAFDVKAYNPKKLLFIAHREELLDKAIE 375 Query: 68 KYQALGLEADIFAAGLKRKESHGK-VVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIG 123 ++ + +F + K +F +VQS++++ L+ F Q EF +I+DE H Sbjct: 376 TFKHVIENDHLFGKITGTVKQFDKPYLFSTVQSLSKDETLNRFKQHEFDYIIIDEFHHA- 434 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 E YQ+++ + P LLGLTATP R+ + H +V Y Sbjct: 435 --EAPTYQKVIRYF---RPKF-LLGLTATPERMDGRDVLAICDHNVV------------Y 476 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ LR + L P + D+S++ + NG+F EA L + LK +R T II Sbjct: 477 EIRLREALDAQLLAPFHYFGISDRTVDYSQIPLK-NGMFDEALLVKALKTNER-TDFIIE 534 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA- 298 I ++ R + F ++HAK + +TG+ R+ +I+ + Sbjct: 535 MIRTYSYDGDRIVGLAFCVNIDHAKYMSEQFNKRGYCTTYLTGEHSVEYREQIIKRLENP 594 Query: 299 -QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 ++ V + G D P ++L+ LRPTES +++ Q +GRGLR GK +LD+ Sbjct: 595 DDPLEFIFTVNIFNEGIDIPSLNLLLFLRPTESSTVFIQQLGRGLRKVEGKEFVTVLDFV 654 Query: 358 GN 359 GN Sbjct: 655 GN 656 >UniRef50_C3X1S4 Helicase n=2 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1S4_OXAFO Length = 496 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 51/367 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAHVKEL 61 LRPYQ +A++ + R ++ PTGAGK+L+ A L + R R + + L Sbjct: 6 LRPYQLDAIERLRDGVRGGFKNQILCAPTGAGKTLIGASLIQECRNKGKRAVFVCDRINL 65 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 + Q ++ G++ + R + + S Q++AR + L+I+DECH Sbjct: 66 IDQTSLRFDEYGIDHGVIQGNHWRTRLYEPIQIASAQTLARRQ---WPDADLIIIDECHT 122 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 I + + + N + ++GLTATPF G G +Y + Sbjct: 123 ISETVKKRIS---------NRNSNVVGLTATPFTKGLGKLYD----------------NL 157 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 + + +I G+L+ + R+ A G + E + + K+ + Sbjct: 158 VNVTSTQALIDEGFLSGYRIYACKEPDMEGVRVVA---GEWEEKETS---KRALEVVGDC 211 Query: 242 ISQIMEFAATRKGVMIFAATVEHAKEI------VGLLPAEDAALITGDTPGAERDVLIEN 295 + + +E +K + T HA+E+ G+L A T T ER ++E Sbjct: 212 VKEYLEHCNGKKFICAGVNTA-HAEELQRQFMAAGILCAN----YTYKTSDEERREIVEE 266 Query: 296 FKAQR--FRYLVNVAVLTTGFDAPHVDLIAILRPT-ESVSLYQQIVGRGLRLAPGKTDCL 352 F+ +R L+ V T GFD P V+ I + RP S++ + Q+ GRGLR+ P K +C+ Sbjct: 267 FRKPESVYRGLITVTAATKGFDVPDVECIIMARPLRNSLAEHIQLFGRGLRIHPDKKECI 326 Query: 353 ILDYAGN 359 +LD++GN Sbjct: 327 VLDHSGN 333 >UniRef50_C5PPJ8 Helicase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=C5PPJ8_9SPHI Length = 499 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 127/456 (27%), Positives = 189/456 (41%), Gaps = 94/456 (20%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARGRVLVLAHV 58 M+ TLRPYQ E V R H+ + PTG+GK+ + ++A ++ GR +V+ Sbjct: 4 MLPTLRPYQAEFVKNLAVALRDHRR-VIACAPTGSGKTKMFIDIAYKSISNGRAVVI--- 59 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESH---GKVVFGSVQSVARN---LDAF-QGEF 111 +++ + + EA +K H G++ Q++ R L+ Q EF Sbjct: 60 ---ISETTKIFDQIIGEAGGIEIANGKKHVHIKAGQLYIAMAQTLTRRPLILEQLAQLEF 116 Query: 112 S-LLIVDECHRIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L+IVDE H IG I+ L +V NP++ LG TATP G Sbjct: 117 PPLIIVDEAH-IGTP-----SNIIRRLIEVSNPYI--LGFTATP-------------DGR 155 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 V L+ C+ + +I+ G+L + L D ++ NG ++E Sbjct: 156 VAKHLTELYNTCVVCCQVDELIQQGFLCSYQHLARTKADTDILEMR---NGEYTEQSQTA 212 Query: 230 ELKKQQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGA 287 T + I E +AT K MIF ++++HA+E+ + L+ G Sbjct: 213 AFS-----TAAVYDGIFEDLRSATFKKCMIFVSSIKHAREM-------NERLLAGGFECV 260 Query: 288 ERDVLIEN--FKAQRFRYL------VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 E +EN ++ +F L V+VA LT GFDAP VDL+ + R T S+ LY Q++G Sbjct: 261 EYHSQLENGSYELAKFTELGLANICVSVASLTKGFDAPAVDLVILNRATTSLPLYLQMIG 320 Query: 340 RGLRLA------PGKTDCLILDYAGN--PHDLY----------------------APEVG 369 RG R P K +LDY GN H LY AP Sbjct: 321 RGSRPVWAPDGMPLKAHFRVLDYGGNWERHGLYFEDRDWENMWEVTKRSKKGEGVAPVAL 380 Query: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 P +S Q CP CG K G L+E Sbjct: 381 CPSCESIISTTQRICPFCGHERPLTEKELEQGELVE 416 >UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LA91_9DELT Length = 798 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 113/437 (25%), Positives = 178/437 (40%), Gaps = 72/437 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR------------------L 47 R YQ A++ L + ++ L TG GK+ + +LA Sbjct: 160 RYYQHNAINQALEAIAAGRDRILLTLATGTGKTFIAFQLAWKLFQSRWNLKDWKGGGEPS 219 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEA--DIFAAGLKRK---ESHGKVVFGSVQSVAR 102 R R+L LA L +Q + + A +A I +++K +G + F Q+ Sbjct: 220 RRPRILFLADRNILASQAYNAFSAFPEDALVRISPDAIRKKGMVPKNGSIFFTIFQTFMA 279 Query: 103 NLDAFQGE-----------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 DA F +++DECHR G ++ES +++ILT+ + P ++L GLTA Sbjct: 280 GRDAAGNPAPNFGDYPPDFFDFIVIDECHRGGANDESNWREILTYFS---PAVQL-GLTA 335 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP------PERLDMP 205 TP R G D A F D +Y L+ I GYLTP LD Sbjct: 336 TPKRKGNV-------------DTYAYFGDPVYVYSLKEGINDGYLTPFKVRQIATTLDEY 382 Query: 206 VVQYDFSRLQA--QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 V D + ++ + ++E+D NR ++ +R + + M+ + ++F AT + Sbjct: 383 VYTADDNVIEGDIEEGRRYTESDFNRVIEIAER-ERYRVKLFMDMIDQTQKTLVFCATQD 441 Query: 264 HAKEIVGLLPAE------DAALITGDTPGAERDVLIENFKAQRFRY---LVNVAVLTTGF 314 HA + + D + G+E + + F+ L L+TG Sbjct: 442 HALAVRDCINQTKQNSDPDYCIRVTANDGSEGERWLRVFQDNDKTIPTILTTSQKLSTGV 501 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV-GTP-- 371 DA +V I ++RP S+ ++QIVGRG RL GK I D+ PE G P Sbjct: 502 DARNVRNIVLMRPINSIIEFKQIVGRGTRLFEGKDYFTIYDFVKAYERFDDPEWDGDPIE 561 Query: 372 KGKSDNVPVQVFCPACG 388 V CP CG Sbjct: 562 PEPRPPVKPPKECPVCG 578 >UniRef50_C4WDM0 Phage DNA/RNA helicase n=1 Tax=Staphylococcus warneri L37603 RepID=C4WDM0_STAWA Length = 472 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 111/422 (26%), Positives = 181/422 (42%), Gaps = 77/422 (18%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F L YQ++ VD H +K+ +I P G+GKS++IAE+ + A + +L + H K Sbjct: 7 FKLYDYQEKLVDQA-RHILLNKSGVLIQSPPGSGKSVMIAEVVKNAVNKGNHILFIVHRK 65 Query: 60 EL---VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIV 116 EL + K+ + DI + + A+N+ +++ Sbjct: 66 ELSHQIKNTLTKHDVDLSQVDILS-----------------EKRAKNIMHELTPPKIIVT 108 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H Y+ I + P+ +G TATP+R Y MV+G Sbjct: 109 DETHH---SRAKTYKDIYDYF----PNALRVGFTATPWRANSKGFTDI-YDEMVKGPS-- 158 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + ++IK+ L + VV D S+L+ S G F++ ++ + K Sbjct: 159 ----------VEWLIKNKRLADYDY--KSVVLADESKLKKSSTGDFTKKSIDNAIPKG-- 204 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG--LLPAEDAALITGDTPGAERDVLIE 294 I I+ ++A +K ++ +A +VE +K+I L +AA T ER ++E Sbjct: 205 IYGDIVENYQKYANGQKTIL-YAHSVEASKDIAEQFKLNGINAAHADAKTNIKERTQIME 263 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 +FK + L NV +++ GFD P + + RPT+S+ L+ Q R +R P K LI+ Sbjct: 264 DFKKGAIKVLCNVDLISEGFDVPDCTCVILARPTDSLVLFMQQAMRSMRYQPNKK-ALII 322 Query: 355 DYAGN---------PHDLYAPEVGTPKGKS---DNVPV----QVF---------CPACGF 389 D+ GN PHD G K KS D++ + Q F CP CG Sbjct: 323 DHVGNYARHGLPDTPHDWKKYFKGFKKRKSKENDDIGLKTCNQCFTVYSSELYECPNCGH 382 Query: 390 AN 391 N Sbjct: 383 IN 384 >UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasmatales RepID=Q6F1F2_MESFL Length = 905 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 104/382 (27%), Positives = 170/382 (44%), Gaps = 47/382 (12%) Query: 5 LRPYQQEAVDATLNHFRRH--KTPAVIVLPTGAGKSLVIAELARLARG------RVLVLA 56 L +Q+E +D +RRH K ++++ TG GK+LV A + G ++L LA Sbjct: 203 LYKFQKEIIDKL--SYRRHINKNKNLVIMATGTGKTLVSAFDYKRQSGQAKKDLKILFLA 260 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKV---VFGSVQSVARNLDAFQ-GEFS 112 H +E+V Q Y+ + LE + F + + + +F ++Q+++ L+ F+ +F Sbjct: 261 HQREIVDQAIKTYRHV-LENNKFGEVMYDGSINSEKPIHLFATIQTLSTRLNKFKPNDFD 319 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +++ DE H I + + ++ + P ++LGLTATP R Sbjct: 320 IIVYDEAHHIA---ANTFDKVFNYFK---PQ-QILGLTATPERED-------------NK 359 Query: 173 DEKALFRD-CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 D KA F D EL L I L P D + D + Q L S+ D+ + + Sbjct: 360 DIKAYFDDEYATELRLWDAIDQKLLCP---FDYYCI--DDTNTNLQGVNLNSDKDIFKVV 414 Query: 232 KKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 R + I ++ R +IF TVEHA I L +++ A ++T Sbjct: 415 NTDSR-NELLFKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTKD 473 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 + +L E F R YL V + G D P ++ I +LRPT S ++Y Q +GRGLR Sbjct: 474 RKRILHE-FSTGRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTEL 532 Query: 348 KTDCLILDYAGNPHDLYAPEVG 369 K + D N + Y +G Sbjct: 533 KNKLEVYDLISNIDNKYDITLG 554 >UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebacterium RepID=Q6M621_CORGL Length = 971 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 105/383 (27%), Positives = 174/383 (45%), Gaps = 67/383 (17%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+EA+DA L+ + + VI+ TG GK+++ A R+ + RVL + H ++++ + + Sbjct: 218 QEEALDALLSLTEKGEKRGVIISATGTGKTILAALATRMLKPERVLFVVHREQILDKARS 277 Query: 68 KYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ---GEFSLLIVDECHR 121 ++ + LE D KE VFG++Q++ + Q +F L+IVDE HR Sbjct: 278 EFIKV-LERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQISPTDFDLVIVDEVHR 336 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR-D 180 G + Y +L HL P LLGLTATP R IY+ LF + Sbjct: 337 AGAE---SYLALLNHL---QPQF-LLGLTATPERTDGFNIYE-------------LFDFN 376 Query: 181 CIYELPLRYMIKHGYLTPPE-------RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 YE+ L+ ++ L P LD D S+L A L Sbjct: 377 VPYEIRLQAALESNMLVPFHYYGVTDFTLDSETTVTDTSKLSA--------------LVS 422 Query: 234 QQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAE--- 288 ++R+ HI+ + + +G +IF + E A+E+ LL D +L G + Sbjct: 423 EERVH-HILEALKTYGHPENVRG-LIFCSKTEEAEELSKLL---DQSLFNGSLLKTKALS 477 Query: 289 -------RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 R+ ++ ++ Y++ V + G D P V+ I ++R T+S ++ Q +GRG Sbjct: 478 AKDSIPYREEVVAELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRG 537 Query: 342 LRLAPGKTDCLILDYAGNPHDLY 364 LR A GK ++D+ GN + Y Sbjct: 538 LRKAAGKDHLRVIDFIGNYANNY 560 >UniRef50_P24125 51.5 kDa protein n=5 Tax=root RepID=V51K_BPL79 Length = 452 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 103/380 (27%), Positives = 171/380 (45%), Gaps = 64/380 (16%) Query: 28 VIVLPTGAGKSLVIAELARLAR---GRVLVLAHVKELVAQNHAKYQALGL---EADIFAA 81 +I P G+GKS+VI+E+ +LA GRVL L H KEL+ Q ++ G+ + ++ Sbjct: 1 MIQSPPGSGKSVVISEITKLATEKGGRVLFLVHRKELIDQITNSFKVHGVPLNQVELLTV 60 Query: 82 GLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVN 141 G A+N + + +L+I DE H + + YQ+I V Sbjct: 61 G-----------------KAKNRLSVLRKPTLIITDEGHH---GKAATYQKIYEFYADV- 99 Query: 142 PHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE 200 P L G TATP+R+ G G+ + Y M+ G + ++I + L P + Sbjct: 100 PRL---GFTATPWRMSGDGFKDTYDY--MIEGK------------TVEWLINNKRLAPYQ 142 Query: 201 RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAA 260 +P + D S+L+ + NG +S ++ L K I ++ + ++ A +K ++ +A Sbjct: 143 YYSLPSI--DISKLRIK-NGDYSNQSIDDALGKT--IFGDVVQEYVKHANGQKAIL-YAH 196 Query: 261 TVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPH 318 +VE ++ A + TP ERD L+ +F+ R + L NV +++ GFD P Sbjct: 197 SVEASQSFAKEFQEAGIKAVHVDAKTPKNERDKLMLDFRNGRIKVLCNVDLISEGFDVPD 256 Query: 319 VDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAP----------EV 368 + + RPT+S+ L+ Q R +R KT +I+D N H P E Sbjct: 257 CTVTILCRPTKSLVLFLQQSMRSMRYQHRKT-AIIIDNVMNWHAHGLPDTHHDWKDYFEG 315 Query: 369 GTPKGKSDNVPVQVFCPACG 388 G K N+ CP C Sbjct: 316 GWKKKGQKNIVQAKQCPDCS 335 >UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax=Corynebacterium RepID=C6R8F6_9CORY Length = 1040 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 178/374 (47%), Gaps = 42/374 (11%) Query: 7 PYQQEAVDATLNHFR---RHKTPAVIVLPTGAGKSLVIAELAR------LARGRVLVLAH 57 PYQ+E ++A + RH+ ++V TG GK++V A R R R+L +AH Sbjct: 320 PYQEEMLEALRSEREVKDRHRN--LLVAATGTGKTVVAALDYRNLCEQWKRRPRLLFVAH 377 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESH-GKVVFGSVQSVA----RNLDAFQGEFS 112 KE++ Q +Q + +AD + E VF SVQS++ +NL++ F Sbjct: 378 RKEILQQARRTFQEVLKDADFGELLVDGAEPRRWDYVFASVQSLSASRLQNLNS--KHFD 435 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++++DE H + Y+ +L HL P LLGLTATP R G G Q ++ V Sbjct: 436 VVVIDEFHHA---QAPTYKALLDHL---QPQ-ELLGLTATPER-GDGENVQKYFDYRV-A 486 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 E L+ L L+ ++ Y + D+ + + + + L SE + K Sbjct: 487 HELRLWD----ALRLQLLVPMHYYGIADGTDLSSLTWSREKKDYNTEEL-SEFYIKAGEK 541 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL-----LPAEDAALITGDTPGA 287 + + I + +I + + + + F T+ HA+ + +PA +T D Sbjct: 542 RTRFIVNELNRRIFDLSDMK--AIGFCVTIAHAEYMARQFQHFGIPAR---AVTSDLTAT 596 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER I++ + + L +V + G D P V+ + +LRPT+S ++ Q +GRGLRL+PG Sbjct: 597 ERAQAIKDLENGDVKVLFSVDIFNEGVDIPAVNTLLLLRPTQSPVVFLQQLGRGLRLSPG 656 Query: 348 KTDCLILDYAGNPH 361 K C+ILD+ G H Sbjct: 657 KDSCVILDFIGQQH 670 >UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EF5_PEDPA Length = 950 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 172/369 (46%), Gaps = 44/369 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHA 67 QQ A+ A +N + +I+ TG GK+ + A R R R L + H ++++ + Sbjct: 220 QQAALKALINLRSEGQKRGLIISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALL 279 Query: 68 KYQ-ALGLEAD---IFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECH 120 ++ LG AD I A G KE K VF ++Q+++R L+ + F +++DE H Sbjct: 280 SFKNVLGGPADDYGILAGG--TKEIDRKYVFATIQTLSRPDILNELKANTFDYILIDEAH 337 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFR 179 + G + YQ+I+ H P LLG+TATP R IY+ F YH Sbjct: 338 KAG---AASYQKIINHFK---PEF-LLGMTATPERTDDFNIYELFDYH------------ 378 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 YE+ L+ I+ L+ + + +Y+ + ++ + L ++R+ Sbjct: 379 -IAYEIRLQDAIEEKMLSEFHYIGITDYEYE--------GQVITDNTPLKHLVSRERM-D 428 Query: 240 HIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 ++ QI + V +IF + E A E+ ++ + +TG+ R+ I+ Sbjct: 429 YVEQQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVDNREATIKK 488 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ YLV V + G D P ++ + +LR TES ++ Q +GRGLR + GK I+D Sbjct: 489 FENGEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEGKDFVTIID 548 Query: 356 YAGNPHDLY 364 + GN + Y Sbjct: 549 FIGNYQNNY 557 >UniRef50_C5R853 DEAH-family helicase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R853_WEIPA Length = 445 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 162/365 (44%), Gaps = 48/365 (13%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAH 57 M F+L YQ E +D ++V P G+GK++ +AE+A+ RVL + H Sbjct: 1 MTFSLYDYQLELIDGIYKELTNGHKHVMVVSPAGSGKTVTMAEIAKRTTDKGNRVLFVVH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 E+V Q + G+ D+ G+ ++++ R D ++ VD Sbjct: 61 RVEIVNQVKNSFTKHGVNMDLADVGM-------------IKTIERKKDKLTHP-DVVFVD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKA 176 E H + Y+++L V ++L+ TATP RL G+G ++ GMV G Sbjct: 107 EAHH---SLAATYKRLLAQFDNV---VQLM-FTATPVRLSGEG--FRDVADGMVIGKS-- 155 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + ++I+H L P E P + +D L+ S G ++ ++ KK Sbjct: 156 ----------VSWLIEHKRLAPFEYY-APTL-FDLESLKV-SRGDYTNKSMHEASKKV-- 200 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 I ++ A + ++A VE +K +V AA + G T ER L+ Sbjct: 201 IFGDVVKSYQRIANNTQA-FVYAVDVESSKAVVQAFNDAGIPAAHVDGKTHKDERAALMN 259 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 +F+ + L N + G D P+V+ + LRPT+S+S+Y Q R +R PGK I+ Sbjct: 260 SFRDGDIKILSNAELFLEGVDVPNVETVIQLRPTKSLSMYIQFAMRSMRYVPGKV-AKII 318 Query: 355 DYAGN 359 D+ GN Sbjct: 319 DHVGN 323 >UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax=cellular organisms RepID=A0LI77_SYNFM Length = 1077 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 103/376 (27%), Positives = 164/376 (43%), Gaps = 31/376 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q+EA++A ++VL TG GK+ + A + R G+VL +AH +E++ Q Sbjct: 380 QREALEALARTRAEGNQAGLVVLATGLGKTWLAAFDSVRFGAGKVLFVAHREEILRQALK 439 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 ++ + A + K V+F S+Q++ R +L +F + F +++DE H Sbjct: 440 TFRRIRPFAALGLYNGTEKLPGADVLFASIQTLGRTNHLRSFDRNLFDYVVIDEFHHA-- 497 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 YQ+++ H LLGLTATP R G + +V Y Sbjct: 498 -SARSYQKLIDHFQPAF----LLGLTATPERTDGGDLLALCAENLV------------YR 540 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P +P + D+S + +S G F+E L R + ++R + + Q Sbjct: 541 CDLVEGIRDGLLCPFRYFGVPD-EVDYSNIPWRS-GRFNEEALTRAVATKRRAV-NALEQ 597 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFR 302 A R + F + HA + + AA + A R ++ Sbjct: 598 YRSRAGRR--TLAFCCSQRHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDGELD 655 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 + V + G D P+VD + +LRPTES L+ Q GRGLR+A GK ++DY GN Sbjct: 656 VIFAVDMFNEGVDLPNVDTVMMLRPTESRILWLQQFGRGLRVAEGKDYLRVIDYIGNHRS 715 Query: 363 -LYAPEVGTPKGKSDN 377 L P G+ DN Sbjct: 716 FLLKPRTLLGLGRGDN 731 >UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax=Bacillaceae RepID=C5D556_GEOSW Length = 1053 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 164/362 (45%), Gaps = 33/362 (9%) Query: 10 QEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 QE L H R++ VI+ TG GK+ + A ++ ++L +AH +EL+ Sbjct: 310 QEKALRNLQHTRKNGNNKGVIIAATGTGKTYLSAFDVKAFNPKKLLFIAHREELLDNAIK 369 Query: 68 KYQALGLEADIFAAGLKR-KESHGKVVFGSVQSVARN--LDAFQ-GEFSLLIVDECHRIG 123 +Q + + +IF KE +F +VQS+ ++ L F+ EF +I+DE H Sbjct: 370 TFQQVIPKKEIFGKITGTVKEFDKPYLFSTVQSLHKDEILKRFKRDEFDYIIIDEFHHA- 428 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 E Y++++ + P LLGLTATP R+ + H +V Y Sbjct: 429 --EAPTYRKVIDYF---QPKF-LLGLTATPERMDGRDVLALCDHNIV------------Y 470 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ LR ++ L + D+S++ + NG F E L + LK +R T II Sbjct: 471 EIRLREALEANLLASFHYFGVSDHTVDYSKIPLK-NGFFDEDALVKALKTNER-TDFIIE 528 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQ 299 I + R + F +EHAK + +TG+ R+ +I+ + + Sbjct: 529 MIKTYGYHGDRMIGLGFCTNIEHAKYMSEEFNKRGYHTTYLTGEHSIDYREKVIKQLEDE 588 Query: 300 R--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + V + G D P ++LI LRPTES +++ Q +GRGLR GK ILD+ Sbjct: 589 NHPLELIFTVNIFNEGIDIPKLNLILFLRPTESSTVFIQQLGRGLRKVEGKEFVTILDFI 648 Query: 358 GN 359 GN Sbjct: 649 GN 650 >UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=B1VE55_CORU7 Length = 969 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 109/370 (29%), Positives = 172/370 (46%), Gaps = 49/370 (13%) Query: 9 QQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNH 66 Q EA++ +N R + A+++ TG GK+++ A R A + L L H ++++ + Sbjct: 220 QVEALE-NINRLRSQGEQRALVISATGTGKTILGALAVRSANPKKFLFLVHTEQILDRAM 278 Query: 67 AKYQ-ALGLEADIFA--AGLKRKESHGKVVFGSVQSVARNLDAF---QGEFSLLIVDECH 120 +Q LG + F AG R E + F ++ S++R + + Q F +IVDE H Sbjct: 279 LDFQKVLGAGPEEFGKFAGSSR-ELGKRYTFATIASLSRPENLYKLSQDYFDFIIVDEVH 337 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKALFR 179 R E + Y +I+ HL P LLGLTATP R GK +FH+ Sbjct: 338 RA---EAATYVRIIEHL---KPDF-LLGLTATPERTDGKSIFERFHH------------- 377 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + YE+ L+ ++ L P + D++ + N + E L +R+ Sbjct: 378 NVAYEIRLQKALEEKMLVPFNYYGVT----DYT--DNEGNVVDDEFSSLARLCAPERVK- 430 Query: 240 HIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAEDA--------ALITGDTPGAER 289 HI++ + FA KG +IF + VE A+E+ LL E AL + AER Sbjct: 431 HIVNMLNTYGFAGDVKG-LIFCSRVEEAEELSRLLNKEKVYGRTLRTLALSSQYFTVAER 489 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 +E + YL+ V + G D V+ I +LRPTES ++ Q +GRGLR GK Sbjct: 490 QKAVERLENGELDYLLTVDIFNEGIDIRSVNQIVMLRPTESSIIFTQQIGRGLRKCEGKD 549 Query: 350 DCLILDYAGN 359 ++D+ GN Sbjct: 550 HLRVIDFIGN 559 >UniRef50_A0QRU1 Type III restriction enzyme, res subunit n=3 Tax=Bacteria RepID=A0QRU1_MYCS2 Length = 566 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 107/372 (28%), Positives = 163/372 (43%), Gaps = 37/372 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-----LVIAELARLARGRVLVLAH 57 + L +Q++A + N R + ++ +PTG+GK+ ++ +EL + V+ LA+ Sbjct: 164 YGLFSHQRDACKQSQNRLRMNPHRVLLHMPTGSGKTRTAMHIIASELRQQEPTLVIWLAY 223 Query: 58 VKELVAQNHAKYQA----LG-LEADIFAAGLKRKESHGKVVFG-SVQSVARNLDAFQGE- 110 +EL Q ++++ LG E + R V G V +A+ + + + Sbjct: 224 SEELCEQAASEFEKAWHYLGDRELKTYRMWGSRDLDINDVRDGFMVAGLAKTFELMKRDP 283 Query: 111 ---------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWI 161 SL+I+DE H+ Y+ +L L N +LLGLTATP G+ W Sbjct: 284 DFLARMADRVSLVIIDEAHQAI---AQTYRLVLEVLCDRNEETKLLGLTATP---GRTWN 337 Query: 162 YQFHYHGMVR--GDEKALFRDCIYELPLRYMIKHGYLT----PPERLDMPVVQYDFSRLQ 215 + +K Y+ P+ Y+I YL P D + S +Q Sbjct: 338 DPDADRELANFFNRQKVTLSVRGYDSPVDYLIDEKYLARPVFQPLFYDSNQRELSASEIQ 397 Query: 216 AQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE 275 +N L D+ L + IIS I V++FAATV HA+ + +L A Sbjct: 398 RLANTLDIPDDILERLAVDDQRNLAIISAIEGLVQKHSRVIVFAATVGHARMLAAVLRAR 457 Query: 276 D--AALITGDTPGAERDVLIENF--KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESV 331 A IT T AER +I F ++ L N VLTTGFDAP I RPT+S+ Sbjct: 458 GILANSITSGTASAERSRIIAEFRDRSDEPYVLCNYGVLTTGFDAPRTSAAVIARPTKSL 517 Query: 332 SLYQQIVGRGLR 343 LY Q+VGR R Sbjct: 518 VLYSQMVGRATR 529 >UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococcales RepID=A3Z7D3_9SYNE Length = 1052 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 181/393 (46%), Gaps = 65/393 (16%) Query: 3 FTLRPY--QQEAVDATLN----HFRRHKTPAVIVLPTGAGKSLVIA-ELARLARG----- 50 F LRPY Q+E ++A H R H ++V TG GK+++ A ++ARL Sbjct: 315 FNLRPYAYQREMLEALAAERTVHDRWHN---LVVAATGTGKTVLAAFDVARLHSDFPERF 371 Query: 51 ------RVLVLAHVKELVAQNHAKYQALGLE---ADIFAAG-LKRKESHGKVVFGSVQSV 100 +L++AH KE++ Q A ++ + + +++ G L R+ H VF SVQS+ Sbjct: 372 PAADPPPLLLIAHRKEILQQALATFRQVLRDPAFGELYVDGELPRQWRH---VFASVQSL 428 Query: 101 A-RNLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGK 158 A R+L + F+++IVDE H Y++ L HL P L LLGLTATP R Sbjct: 429 AQRDLAEIPADRFAVVIVDEFHHAA---ALSYRRWLDHL---RPQL-LLGLTATPER-AD 480 Query: 159 GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 G + G + EL L + G L P + D S L+ + Sbjct: 481 GLDVLRWFGGRIAA-----------ELRLWTALDQGLLAPFHYFAV-ADATDLSSLEWRR 528 Query: 219 NGLFSEADLNRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAK------EIVG 270 G + A+L+ R I+S++ + A R + F +VEHA+ VG Sbjct: 529 GG-YVPAELSTLYTGDHRRVALILSELEKAVAEPRRMRALGFCVSVEHARFMAERFRAVG 587 Query: 271 LLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 L A + TP ER + A + L V + G D P +D + +LRPTES Sbjct: 588 L----QAEALDASTPSDERREALRRLHAGELQILFAVDLFNEGLDIPSIDTVLLLRPTES 643 Query: 331 VSLYQQIVGRGLRLAP--GKTDCLILDYAGNPH 361 ++ Q +GRGLRL+P GK+ +LD+ G H Sbjct: 644 AVVFLQQLGRGLRLSPETGKSCLTVLDFIGQQH 676 >UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBN3_DESAH Length = 1076 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 35/375 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A++A + A++V+ TG GK+ L + ++ R GRVL +AH +E+++Q + Sbjct: 200 QERALEALRDSRNNGLQRALVVMATGVGKTWLAVFDILRNGFGRVLFVAHREEILSQAAS 259 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 + + + K ++FGSVQS+ + +L F + F +++DE H Sbjct: 260 TFLTVNPRMKVGFFHGNEKSEDADILFGSVQSLGKKIHLKKFDRTAFDYIVIDEFHHAS- 318 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + YQ IL + T P LLGLTATP R I F D FR Sbjct: 319 --AASYQNILNYFT---PSF-LLGLTATPERSDGRDIEAF-------CDNNVAFR----- 360 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P + D+ + +S F A++ + Q R I + Sbjct: 361 FDLTEAIEAGRLCPFTYFGIYDRHVDYELIPWRSR-RFDPAEIETAFETQARAL-QIFEE 418 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPG-AERDVLIENFKAQRFRY 303 E +R + F ++ HA + + ++ + R I+ + Sbjct: 419 WTEKGQSR--TLGFCVSIHHADFMASFFSGKGVKAVSVHSKSMVRRHDAIDRLSNGLLQI 476 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN---- 359 + V + G D P +D + ++RPTES +Y Q +GRGLRL GK +++D+ GN Sbjct: 477 IFCVDLFNEGVDIPGIDTVLMVRPTESPVVYLQQLGRGLRLKDGKERLVVIDFIGNHRSF 536 Query: 360 ---PHDLYAPEVGTP 371 P L+ + G+P Sbjct: 537 LQGPQALFGLQPGSP 551 >UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY89_SYNWW Length = 773 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 31/363 (8%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKE 60 + LRP+Q+E ++ + + A+I G GK+ A L G L +AH E Sbjct: 154 VLELRPHQEETLERLQELRGEYHSMALIADAQGTGKT-TTAVLDACNMGLCTLFVAHTLE 212 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDEC 119 L+ Q +++ L A + V+ S+Q + L F + F +I+DE Sbjct: 213 LLQQAANRFKELWPRAQVKIIDNYAGPLDADVMIASIQGLHNRLTQFAPDHFGYIIIDEA 272 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H + Y+++L++ P LLGLTATP R + I + +F+ Sbjct: 273 HHAA---ATTYRKVLSYF---KPRF-LLGLTATPERHDQESIME-------------IFQ 312 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL-FSEADLNRELKKQQRIT 238 + + L L+ ++ G L P R DFS Q + NG+ ++ DL+ + +R Sbjct: 313 NEAHRLDLKTAVEIGELVPI-RCVRVKTNIDFS--QVRINGIRYNYRDLDSCVHVPER-N 368 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENF 296 I+ + K V +F A+++HA E+ L A ++ G +R+ ++EN+ Sbjct: 369 RLIVETYLSHVPGEKAV-VFCASIQHAMEVAELFRDSGVKAEVVEGRMKKRDREAVLENY 427 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + + L +L G+D+P ++ + RPT S +Y Q +GRG R APGK L+ D+ Sbjct: 428 HQDKVKVLCACDILNEGWDSPETAVLFMARPTLSRVIYLQQLGRGTRKAPGKEALLVFDF 487 Query: 357 AGN 359 N Sbjct: 488 IDN 490 >UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax=Bacteria RepID=A7HHG6_ANADF Length = 1418 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 109/388 (28%), Positives = 173/388 (44%), Gaps = 42/388 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHVKELV 62 Q++A+DA + A++V+ TG GK+L+ A A R RVL +AH +EL+ Sbjct: 335 QRDALDALAATRADGEKRALVVMATGLGKTLLAAYDADAFRSTLDHPIRVLFIAHRRELL 394 Query: 63 AQNHAKYQAL--GLEADIFAAGLK--RKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 Q ++ + G D+ R E +V SVQ ++R NL+ E F ++ Sbjct: 395 VQAATTFRRVLRGAMPDLRVGWFAEDRSELEADIVVASVQKLSRPENLERLAAERFDYVV 454 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H E Y++IL+ +++P LLGLTATP R +G D Sbjct: 455 VDEVHHA---EAPSYRRILS---RIDPGF-LLGLTATPDRADEG-------------DVL 494 Query: 176 ALFRDCI-YELPLRYMIKHGYLTPPERLDMP-VVQYDFSRLQAQSNGLFSEADLNRELKK 233 LF D + + L I+ L P + V Y + + N F L ++ Sbjct: 495 GLFDDNLPFRADLGVGIEAKRLVPFAYFGLKDTVDYSHDNIPWR-NRRFDPKRLEEAVQT 553 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDV 291 Q+R+ + S + E R ++F ++ HA+ L + + D +R Sbjct: 554 QERME-RLWSALGEHGGMR--TLVFCCSIPHAEFAKRWLEGRGVRVRAVHSDPGSDDRSR 610 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 + + A R + V + G D P VD + +LRPTES ++ Q +GRGLR+A GK Sbjct: 611 ALADLAAGRIDAVCAVDLFNEGVDVPLVDRVVMLRPTESPVVFLQQLGRGLRIAEGKERL 670 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVP 379 ++D+ GN H ++ V T D P Sbjct: 671 TVIDFVGN-HRVFLDRVRTLLSLGDARP 697 >UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=C0XQJ4_9CORY Length = 943 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 168/351 (47%), Gaps = 49/351 (13%) Query: 27 AVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHAKYQALGL--EADI-FAAG 82 A+I+ TG GK+++ A R + R VL +AH ++++ + ++Q + DI F G Sbjct: 200 AIIISATGTGKTILSALAVRQIKPRRVLFVAHREQILNKAAEEFQRVLACPPTDIGFIVG 259 Query: 83 LKRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTK 139 +RKE++ ++VF ++QS+ R + +F L+IVDE HR G + YQ++L H Sbjct: 260 -QRKEANQRLVFATIQSLGRGDTLSEISPKQFDLVIVDEVHRSGAE---SYQKVLNHFRA 315 Query: 140 VNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP 198 LGLTATP R +++ F Y + YE+ L +++ L P Sbjct: 316 DFT----LGLTATPERTDGFNVFELFDY-------------NVPYEIRLEDALENHMLVP 358 Query: 199 PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIME---FAATRKGV 255 + Y S ++ + S+ ++L +R+ H +++I++ FA KG+ Sbjct: 359 FD-------YYGVSDYESAFGSVISDNSTLQQLAAPERV--HHLAKIIQDYSFARGSKGL 409 Query: 256 MIFAATVEHAKEIVGL-------LPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVA 308 + ++ E A GL P AL GD+ R+ +E Y++ V Sbjct: 410 IFCSSNAEAAALSKGLNTESVHGRPLRTIALSGGDSI-ETRENTVEKLAQGEIDYILTVD 468 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 + G D P V+++ +LR T+S ++ Q +GRGLR GK ++D GN Sbjct: 469 IFNEGIDIPPVNVVVMLRSTQSSIVFTQQLGRGLRKYAGKRSLRVIDVIGN 519 >UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria RepID=Q3B4P0_PELLD Length = 1065 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 108/380 (28%), Positives = 173/380 (45%), Gaps = 44/380 (11%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA----ELARLARG--RVL 53 F LRPY QQ +D N K +++ TG GK++V A A+ G R+L Sbjct: 338 FFDLRPYGYQQVILDDIHNERNAGKQKHLVIAATGTGKTMVAAFDYKGFAKEHSGFPRIL 397 Query: 54 VLAHVKELVAQNHAKYQAL---GLEADIFAAGLK-RKESHGKVVFGSVQSV-ARNLDAFQ 108 ++H +E++ Q A ++ + G +I A G + R H +F +VQS AR LD Sbjct: 398 YVSHREEILKQARASFRQVMRDGSFGEILAGGSEPRSFEH---LFCTVQSWNARKLDHLP 454 Query: 109 GEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHY 166 ++ + +++DE H D YQ ++ H V P L LLGLTATP R G+ Sbjct: 455 PDYYAYVVLDEAHHAAAD---TYQHLIAH---VRP-LSLLGLTATPERSDGED------- 500 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEA 225 +R D F +E+ L I+ L P +P + DFS LQ NG + + Sbjct: 501 ---IRNDFGGAF---THEIRLAESIERALLAPFHYFGIPDLDGLDFSSLQWTRNG-YDVS 553 Query: 226 DLNRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALIT 281 L + ++ Q+ + + + + + F +VEHA + A +++ Sbjct: 554 GLRHLVDNNSARAQWVMGQVDRYVSDIRKIRALGFCISVEHAVFMAKWCRDNSIPAIVLS 613 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 ++P R +A+ + V + G D P VD + LRPTES++++ Q +GRG Sbjct: 614 ANSPSELRHNAQRQLEAREINIIFTVDLFNEGVDIPSVDTVLFLRPTESLTVFLQQLGRG 673 Query: 342 LRLAPGKTDCLILDYAGNPH 361 LRL K +LD+ H Sbjct: 674 LRLHDEKPHLTVLDFIAPQH 693 >UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=Bifidobacterium RepID=D2Q5U4_9BIFI Length = 1050 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 168/368 (45%), Gaps = 41/368 (11%) Query: 21 RRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQ-ALGLEADI 78 ++ ++ A+I+ TG GK+ + A ++ + R+L +A ++++ + YQ LG A Sbjct: 255 KQGESRAIIISATGTGKTYLSAFDVRQFKPKRMLYIAQQEQILKKAKESYQKVLGCPAKE 314 Query: 79 FA--AGLKRKESHGKVVFGSVQSVARNLDAFQ---GEFSLLIVDECHRIGDDEESQYQQI 133 +G+ KE K +F +VQ+++R Q +F +++DE H D Y++I Sbjct: 315 LGLFSGIS-KEHDRKYLFATVQTMSRPEVLVQFGKDDFDYILIDEVHHAAADS---YKRI 370 Query: 134 LTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV------RGDEKALFRDCIYELPL 187 + + T P +LG+TATP R I++ + + R E+++ C P Sbjct: 371 IDYFT---PDF-MLGMTATPERTDGANIFELFGNNVAYEIRLQRALEESML--C----PF 420 Query: 188 RYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIME 247 Y H Y+ + Q S Q S EL R+ +II +I Sbjct: 421 HYYGVHEYIQEAPNGRLLGKQIKASDWTEQERNDLSH--WLEELTSPSRVH-YIIDKIQL 477 Query: 248 F--AATRKGVMIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDVLIENF 296 + A T ++F + E AK + L + ITG+ AERD+ +E Sbjct: 478 YGEAGTDVQGLVFCSRREEAKRLSALFNQQINQQAERPYHTKAITGEHSQAERDLAVEQL 537 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + Y+ V + G D PH++ I +LR T+S ++ Q +GRGLR A GK +++D+ Sbjct: 538 ENGELDYIFTVDLFNEGVDIPHINQIVMLRQTQSSIIFTQQLGRGLRKASGKDSVVVIDF 597 Query: 357 AGNPHDLY 364 GN + Y Sbjct: 598 IGNYANNY 605 >UniRef50_A3IZE6 DEAD/DEAH box helicase-like protein n=2 Tax=Cyanothece RepID=A3IZE6_9CHRO Length = 522 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 164/368 (44%), Gaps = 34/368 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLP-TGAGKSLVIAELAR---LARGRVLVLAHV 58 F LRPYQ + V++ + + V+V+ TGAGK+++ + L + L +VL L H Sbjct: 14 FKLRPYQAQVVESVHQQLKTDQRQRVLVVAGTGAGKTVIASHLTQDFLLQNKKVLFLVHR 73 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---FSLLI 115 LV Q +K+ L AG + + SVQ++ R + F + I Sbjct: 74 DILVKQTVSKFTHL---PHGIIAGRHQLNLSQPLQVASVQTLGRKGVEWLNHHFPFDIAI 130 Query: 116 VDECHRIGDDEESQYQQILTHLT-KVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 DE H S ++ L + H +GLTATP+R K Y M GD Sbjct: 131 FDESHLTNWFNFSL--ELFPRLPLSQDDHTICIGLTATPWRRSK-------YQAM--GD- 178 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 L++ ++ +I G+L P + V+ R++ NG + L Sbjct: 179 --LYQSSVFAPLPGELISQGFLVPFAYFSIGKVEKKGLRIR---NGEYETVKLKVRCNTP 233 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVL 292 + I HI+++ ++ A R + IF+ +EHA+ I + AA + G +R+ + Sbjct: 234 EVIQ-HIVNEWLDKAKNRPTI-IFSIDIEHAQAIAQAFNNQGISAASVDGTMKIGDREKI 291 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG--KTD 350 E ++ + + + L+ GFD P V + + R T S + Y Q +GRG R+ P K D Sbjct: 292 YEQLAQRKIQVVCSCEALSEGFDVPIVSCVVLARLTTSKAKYIQQIGRGARITPDGEKRD 351 Query: 351 CLILDYAG 358 CL+LD G Sbjct: 352 CLVLDAVG 359 >UniRef50_D2B497 Putative helicase n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B497_STRRD Length = 469 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 112/375 (29%), Positives = 174/375 (46%), Gaps = 49/375 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS----LVIAELARLARGR-VLVLAH 57 + L P+Q+ A+ + +T ++ +PTG+GK+ ++ + R GR VL LA Sbjct: 73 YGLFPHQRRAISKARALLGKGRTRLLLHMPTGSGKTRTTLSMVCDFLREHEGRPVLWLAS 132 Query: 58 VKELVAQN----HAKYQALG-LEADIFAA----GLKRKESHGKVVFGSVQSV-ARN---- 103 +EL+ Q H + +LG E I AA + ++ ++ S+Q++ AR Sbjct: 133 TRELLDQAAREFHRAWSSLGDREVPILAAWSGQDWRSEDLTDGLLVASLQTIYARRAEPG 192 Query: 104 -LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVN-PHLRLLGLTATPFRLGKGW- 160 L L++ DE H+ Y+Q++ L+ P ++GL+ATP R G Sbjct: 193 LLRDLGRRIGLIVFDEAHQA---IAPTYRQVVQQLSVAGQPITPIVGLSATPGRTFVGSP 249 Query: 161 ----IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE-RL--DMPVVQYDFSR 213 + +F H + E D P+ Y+I+ GYL PE RL ++P V + S Sbjct: 250 ADDELAEFFEHTKI---ELETASDGGATGPVEYLIQQGYLAEPEFRLLGELPDVDEEPSV 306 Query: 214 LQAQSNGL-FSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL 272 L E D +E +T + + E + + +++FAA+VE A + L Sbjct: 307 DSDDPAELGMDEGDYLKE------VTAATLQLVKE---SHRRIIVFAASVELAHVVAATL 357 Query: 273 PAED--AALITGDTPGAERDVLIENFK--AQRFRYLVNVAVLTTGFDAPHVDLIAILRPT 328 A A + G T RD I +K A R LVN VLTTGFDAP + I RPT Sbjct: 358 RASGVLADAVDGTTAPEIRDTAIRMYKGAAPVARVLVNYGVLTTGFDAPQTSAVVIARPT 417 Query: 329 ESVSLYQQIVGRGLR 343 S+ LY Q+VGRG+R Sbjct: 418 RSLVLYSQMVGRGIR 432 >UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax=Proteobacteria RepID=C4ZJT0_THASP Length = 1287 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 106/370 (28%), Positives = 167/370 (45%), Gaps = 33/370 (8%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQN 65 P QQEA+ A ++VL TG GK+ + A + ++ RVL +AH +E++ Q Sbjct: 402 PIQQEALAALTRTRHDGYLRGLVVLATGLGKTWLAAFDAEQIGARRVLFVAHREEILKQA 461 Query: 66 HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRI 122 + + A I + +++ V+ SVQ++ RN L+ F + F +I+DE H Sbjct: 462 ADTFVRIRPRARIGFYMGQARDTQVDVLCASVQTLGRNAHLERFAPQHFDYIIIDEFHHA 521 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 Y+++L H P LLGLTATP R + I +V ++ LF Sbjct: 522 A---APTYRRLLAHFA---PQF-LLGLTATPDRTDQSDILSLCDDNLVL--DRNLFAG-- 570 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 I+ G L P + D+ + + NG F L+ +L R H + Sbjct: 571 --------IEAGLLAPFHYFGVWDASVDYEEIPWR-NGRFDPEKLSNKLATLARAR-HAL 620 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVG---LLPAEDAALITGDTPGAERDVLIENFKAQ 299 + + A R + F +V HA+ + L E AA+ G R +E Sbjct: 621 KEWRKRAQQR--TLAFCVSVRHAEFMATQFRLQGIEAAAVYAGSELA--RGEALEQLAEG 676 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 R + +V + G D P +D + +LRPTES L+ Q +GRGLR A GK ++LD+ GN Sbjct: 677 RLAVIFSVDLFNEGVDLPAIDTVLMLRPTESKILFLQQLGRGLRRAEGKERLVVLDFIGN 736 Query: 360 PHD-LYAPEV 368 H L+ P+ Sbjct: 737 HHSFLHKPQA 746 >UniRef50_C7PI11 Type III restriction protein res subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PI11_CHIPD Length = 510 Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 166/374 (44%), Gaps = 50/374 (13%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIV--LPTGAGKSLVIAELARLA----RGRVLVLAH 57 L PYQ+ ++ + I+ LPTG GK+ + +E+A+ +V+VL H Sbjct: 12 NLYPYQERDLNILFEKLGQAPAGRRILYQLPTGGGKTRIFSEIAQWYVTHHHRKVIVLTH 71 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKR---KESHGKVVFGSVQSVARNLDAFQGEF--- 111 EL Q A + + + I + ++R K +H V V+++ L QG F Sbjct: 72 RIELCNQTAATLKTMHIRNKIINSTVRRIRDKSAHDCYV-AMVETLRNRLK--QGLFDPS 128 Query: 112 --SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L+I+DE H + +Q++L+ P+ ++G+TATP YH + Sbjct: 129 SVGLVIIDEAH------HNAFQKLLSKF----PNAVVIGVTATPLSSNAELPMNKSYHEL 178 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 V G+ + +IK GYL P V + + L+ + G F+ + Sbjct: 179 VIGES------------ISRLIKQGYLAKPTSWRYDV---ELNSLKTGNQGDFT-ISTSD 222 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL----ITGDTP 285 EL + + ++ E + K +IF + ++ + L +DA + Sbjct: 223 ELYSSKAML-ELLLHTYETHSKNKKTLIFNNGIFTSRNVCKLF--QDAGYPARHLDNRQS 279 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER+ +++ FK + L +V++LTTGFD P V I + R T S++LY Q++GRG R Sbjct: 280 TTEREEILKWFKKTKGAILSSVSILTTGFDEPSVQTIILNRATTSLTLYHQMIGRGSRSL 339 Query: 346 PGKTDCLILDYAGN 359 P K I+D N Sbjct: 340 PKKKTFTIIDLGNN 353 >UniRef50_A0RVA6 Superfamily II helicase n=1 Tax=Cenarchaeum symbiosum RepID=A0RVA6_CENSY Length = 537 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 101/374 (27%), Positives = 168/374 (44%), Gaps = 55/374 (14%) Query: 8 YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL----VIAELA-RLARGRVLVLAHVKELV 62 YQ AV + ++ +PTG GK+ V+A+L V+ LA+ +EL Sbjct: 143 YQIGAVSRIKDILEHEGGRVLLHVPTGGGKTRIAMRVVADLLLENPSSLVIWLAYSEELC 202 Query: 63 AQNHAKYQAL----------------GLEADIFAAGLKRKESHGKVVFGSVQSVARN--- 103 Q ++++ G + D+ +E ++ + V R Sbjct: 203 EQAIEEFKSAWRHTGNRDVSIYRLFGGHDTDVLG-----RECRSGLIVAGLSKVYRRART 257 Query: 104 ----LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPH-LRLLGLTATPFRLGK 158 L SL+I+DE H+ + Y+ +L +L V H + L+GL+ATP G+ Sbjct: 258 NSMLLTTLADRASLVIIDEAHQAIAE---TYKLVLGYL--VEKHDVNLVGLSATP---GR 309 Query: 159 GWIYQFHYHGMVRG-DEKALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQYDFSR 213 W + +EK + + + P+ ++IK GYL P R D + D R Sbjct: 310 TWNSPLEDRKLAEFFNEKKVTIETGTD-PVSFLIKDGYLAKPNIEQIRHDGMLTNSDMER 368 Query: 214 LQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL- 272 + + L D+ +L + + II +I A + +++FAA + HA++I +L Sbjct: 369 I---AKSLEIPNDILDKLARDAKRNMLIIDKIKRLARDHRRIIVFAAGIRHARDISLVLH 425 Query: 273 -PAEDAALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTE 329 DA+ + DTP R+ LI +F+ R + N VLTTGFDAP + I RPT+ Sbjct: 426 TMGHDASYVDSDTPKDVRNSLINHFREDTADTRIMCNFGVLTTGFDAPKTSAVLIARPTK 485 Query: 330 SVSLYQQIVGRGLR 343 S+ LY Q++GR +R Sbjct: 486 SLILYSQMMGRAIR 499 >UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B1Y673_LEPCP Length = 824 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 112/447 (25%), Positives = 195/447 (43%), Gaps = 91/447 (20%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLAHV 58 T R YQ A++ T+ + + A++V+ TG GK+ ++ A+ R+L LA Sbjct: 165 TPRYYQLNAINRTVEAIAQGRQRALLVMATGTGKTYTAFQIIWRLWKSCAKKRILFLADR 224 Query: 59 KELVAQNHAK----YQALGLEADIFAAGLKRKESHGKV----VFGSVQSVARNLD----- 105 L+ Q ++ + A G++R ++ G+V V +V + +D Sbjct: 225 NILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGRVGVEDVTLAVNRTTKQVDTSYEI 284 Query: 106 ------AFQGE--------------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 A G F L+IVDECHR E+S +++IL++ + Sbjct: 285 YLSLYQAVTGTSDESNIYKQFSPDFFDLIIVDECHRGSAAEDSSWREILSYFSSATQ--- 341 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE--RLD 203 +GLTATP + Y G + IY L+ I+ GYL P + R+D Sbjct: 342 -VGLTATPKETQD--VSNSDYFG-----------EPIYTYSLKQGIEDGYLAPYKVVRID 387 Query: 204 MPVVQYDFSRLQAQSNGL--------FSEADLNRELKKQQR--ITPHIISQIMEFAATRK 253 + + + + ++ L ++ AD+NR L ++R + I++ ++ Sbjct: 388 LDRDTFGWRPTEGMTDKLGNLIEDRVYTGADMNRRLVLERRDEVVAAKITEYLKATDREA 447 Query: 254 GVMIFAATVEHAKEIVGLLPAEDAAL----------ITGDTPGAERDVLIENFKAQRFRY 303 ++F ++HA + L +A + ITGD P +R+ ++NF Y Sbjct: 448 KTIVFCEDIDHAARMRQALSNANADICQTQPRYVVQITGDNPEGKRE--LDNFIDPEKTY 505 Query: 304 LV---NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAG 358 V +++TG DA LI + + +S++L++QI+GRG RL GKT ILD+ Sbjct: 506 PVIATTSKLMSTGVDAQTCKLIVLDQNIKSMTLFKQIIGRGTRLREDLGKTWFTILDFK- 564 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCP 385 +L+A + D PVQV+ P Sbjct: 565 RATELFADK------DFDGEPVQVYEP 585 >UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Bacteria RepID=B0SD57_LEPBA Length = 1046 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 177/390 (45%), Gaps = 54/390 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA------ELARLARGRVLVLA 56 T R YQ+ ++ + R +IV TG GK+++ A + ++ +L +A Sbjct: 314 LTPRVYQERILEELIAERRLGNNKNLIVAATGTGKTVISAFDYRRYSIINNSKPSLLYIA 373 Query: 57 HVKELVAQNHAKYQALGLEAD---IFAAGLKRKESHGKV--VFGSVQSV-ARNLDAFQGE 110 H KE++ Q + ++ + + + +F G+ +F S+QS+ ++ + G+ Sbjct: 374 HRKEILEQALSCFRMVLQDQNFGSLFVDGINPFSGTEAPLHIFASIQSINSKQIWKILGK 433 Query: 111 --FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYH 167 F+ +I+DE H S Y+ I + T P + LLGLTATP R+ G+ + F+Y Sbjct: 434 SFFNFIIIDEVHH---SSASSYRSIFSEFT---PEI-LLGLTATPERMDGESILPDFNY- 485 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 R + + + E R + Y + + + Q+ NG F +L Sbjct: 486 ---RITSEIRLPEALEE---RLLCPFHYFGITDNIQLKGEQF-------WKNGKFDLIEL 532 Query: 228 NR-----ELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAK------EIVGLLPA 274 ++ +QR+ I I + + + F +V+HAK + +G+ Sbjct: 533 ENVYTGDDITAKQRVN-LIYKSINHYQPNSEELKAVGFCVSVKHAKFMAENFQKLGI--- 588 Query: 275 EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 DA I G+T R I +FK ++ + L V + G D P ++ + LRPTES++++ Sbjct: 589 -DAETILGETDSETRRQRIIDFKQKKIKILFTVDIFNEGVDIPEINTVLFLRPTESLTIF 647 Query: 335 QQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 Q +GRGLR AP K +LD+ G H Y Sbjct: 648 LQQLGRGLRHAPNKDALTVLDFIGQTHKKY 677 >UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=D0KYE6_HALNC Length = 783 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 115/422 (27%), Positives = 179/422 (42%), Gaps = 81/422 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--------------RLA 48 F R YQ A++ L H++ ++ L TG GK+ + +LA R A Sbjct: 150 FQSRYYQDIAIERVLAAIADHQSRILLTLATGTGKTFIAFQLAWKLFHSRWNLRDWQREA 209 Query: 49 ----RGRVLVLAHVKELVAQNHAKYQALGLEA-------DIFAAGLKRKESHGKVVFGSV 97 R R+L LA L Q + A +A DI G R +G + F Sbjct: 210 EPSRRPRILFLADRNILANQAFNAFSAFPEDALVRIDPADIRKQG--RVPKNGSLFFTIF 267 Query: 98 QSVARNLDAFQGE------------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 Q+ DA +G+ F +I+DECHR G ++ES ++ IL + P ++ Sbjct: 268 QTFMSGQDA-EGQPAPYFGDYPPDFFDCIIIDECHRGGANDESNWRGILAYFA---PAVQ 323 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP------P 199 L GLTATP R YQ+ F + ++ L+ I G+LTP Sbjct: 324 L-GLTATPKRKDNVDTYQY-------------FGEPVFVYSLKDGINDGFLTPFRVKQIA 369 Query: 200 ERLDMPVVQYDFSRLQAQ--SNGLFSEADLNR--ELK-KQQRITPHIISQIMEFAATRKG 254 LD V D + ++ + + + EAD N+ E+K ++Q+ ++QI + R+ Sbjct: 370 TTLDEYVYTPDDTLVEGEIEAGKRYEEADFNKIIEIKEREQKRVEIFMAQIDQ----REK 425 Query: 255 VMIFAATVEHAKEIVGLL------PAEDAALITGDTPGAERDVLIENFKAQRFRY---LV 305 ++F AT EHA + L+ D GA + + +F+ L Sbjct: 426 TIVFCATQEHALAVRDLINQIKSSSNPDYCQRVTANDGARGEHYLRDFQDNEKTIPTILT 485 Query: 306 NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYA 365 L+TG DA +V I ++RP S+ ++QI+GRG RL GK I D+ H Sbjct: 486 TSQKLSTGVDARNVRNIVLMRPVNSMIEFKQIIGRGTRLYDGKDYFTIYDFVKAHHHFND 545 Query: 366 PE 367 PE Sbjct: 546 PE 547 >UniRef50_A3J9F1 Type III restriction enzyme, res subunit n=1 Tax=Marinobacter sp. ELB17 RepID=A3J9F1_9ALTE Length = 548 Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 32/379 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-----LVIAELARLARGRVLVLAH 57 ++L +Q+ A H R + ++ +PTGAGK+ +++ L ++ LA Sbjct: 144 YSLFDHQRRAAQQVWRHIYRGSSRVLLHMPTGAGKTRTAMHIIVRYLIEHEPCVIVWLAS 203 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGK---------VVFGSVQSVARNLD--- 105 EL+ Q ++ + +KR G V+ G +Q ++ + Sbjct: 204 SAELLEQAADAFEQAWCQMGNREVLVKRAWGGGDLDFEGFEDGVLIGGLQKLSAYFERHP 263 Query: 106 --AFQ--GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWI 161 AF+ L+++DE H+ Y ++ LT+ L+GL+ATP R Sbjct: 264 IPAFRIGRRTKLVVIDEAHQA---IAPTYSSVIEQLTETGADNALIGLSATPGRTWNDIS 320 Query: 162 YQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL 221 G+ K Y P+ ++I +GYL PE + F + G+ Sbjct: 321 EDSRLSDFFDGN-KVTLSIPGYSDPVSFLIDNGYLAKPEFRALEFQSESFETSSKERKGI 379 Query: 222 FSEADLNRELKKQQRITPHIISQIM-EFAATRKGVMIFAATVEHAKEIVGLLPA--EDAA 278 +L +L I +I + K ++ F+A+V +AK++ LL A D+ Sbjct: 380 DYSNELLEQLGDDPSRNALAIREIQCLISEGHKRIIFFSASVANAKKVALLLDAIGVDSG 439 Query: 279 LITGDTPGAERDVLIENFKAQRFRYLV--NVAVLTTGFDAPHVDLIAILRPTESVSLYQQ 336 ++TG + ++R I F+ + +V N VLTTGFDAP I RPT+S+ LY Q Sbjct: 440 IVTGGSSSSQRTRTIRKFRRRTNVPMVMCNYGVLTTGFDAPETSAAVIARPTKSLVLYSQ 499 Query: 337 IVGRGLR--LAPGKTDCLI 353 +VGR R A G C I Sbjct: 500 MVGRATRGVKAGGNETCTI 518 >UniRef50_Q1UZM9 Type III restriction enzyme, res subunit n=1 Tax=Candidatus Pelagibacter ubique HTCC1002 RepID=Q1UZM9_PELUB Length = 553 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 102/403 (25%), Positives = 170/403 (42%), Gaps = 67/403 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAH 57 +L+ YQ ++ + + VI +PTG+GK+ V E+ +VL LAH Sbjct: 150 SLKEYQSTVSFKAIDELKNSASRFVIQMPTGSGKTRVAMEVISQFVNESDKDVKVLWLAH 209 Query: 58 VKELVAQ---------NHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVARNL- 104 KEL +Q +H K + L L D L K ++ ++ G+ Q + + Sbjct: 210 QKELCSQAFQCFIEVWSHLKLKKLDLYRLWDDGDKTLLPNKLNNNSLIIGNFQKLYSEIT 269 Query: 105 ------DAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGK 158 ++ L+I+DE H+ Y++++ +L+ + +++GLTATP R Sbjct: 270 KSPEKFESINNSLDLIIIDEAHKAI---APTYKKVVDNLSSIKT--KVIGLTATPGR--- 321 Query: 159 GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 H + F + I +P + YL + L + + R+ + Sbjct: 322 ----SIHNEESNKS-LSDFFHNKIITIPDKPQGVISYLRDAKVLSRAI----YDRIHTEE 372 Query: 219 NGLFSEADLNRELKKQ-QRITPHIISQIME-----FAATRK-----------GVMIFAAT 261 S+ RE +Q + P I+ Q+ F +K ++ F Sbjct: 373 KITLSKK--QREYMEQFLELPPQILKQLTNDKVRNFELLKKIDLQIKSNPDAKILFFGLN 430 Query: 262 VEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHV 319 + H+K I +L A+ + G T R ++++FK L N +++TGFDAP Sbjct: 431 IVHSKFICAILNTLGIKASHVDGKTSLNRRASILDSFKKGELNVLCNERLMSTGFDAPKT 490 Query: 320 DLIAILRPTESVSLYQQIVGRGLRLAP---GKTDCLILDYAGN 359 D I I RPT S+ LY QI+GRGLR P G C I+D N Sbjct: 491 DTIVIARPTFSIVLYSQIIGRGLR-GPAIGGTEKCTIIDVKDN 532 >UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=Lactobacillus RepID=Q047C2_LACGA Length = 949 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 100/381 (26%), Positives = 174/381 (45%), Gaps = 47/381 (12%) Query: 10 QEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQN-- 65 Q+A A LN + A++V TG GK+ + A + + + L L H +E +A+ Sbjct: 219 QKAALANLNALVKEQAKKALVVSATGTGKTYLGAFAVKEYKPKKFLYLVH-REQIAKKAL 277 Query: 66 HAKYQALGLEADIFAAGLKRKESHG---KVVFGSVQSVARNLDAFQ---GEFSLLIVDEC 119 + Y+ +G + + GL H K +FG+VQ+V++ Q EF +++DE Sbjct: 278 ESFYRVIGGKKSDY--GLLTGNKHDFDKKYLFGTVQTVSQEQILEQLDPEEFDYILIDEA 335 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALF 178 HR+ YQ+IL H P LLG+TATP R+ K IY+ F YH Sbjct: 336 HRVA---APTYQKILNHFA---PKF-LLGMTATPERMDKQNIYEIFDYH----------- 377 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 YE+ L+ + LTP + + D++ N + SE ++L ++R+ Sbjct: 378 --LAYEIRLKDALNDQMLTPFHYVGVE----DYTV----GNHVISETSKLKDLVARKRV- 426 Query: 239 PHIISQI--MEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIE 294 +++ Q+ + + ++F + E A+E+ L + +T + +R + Sbjct: 427 EYVLKQLDYYGYCGEKAKGLVFCSRQEEARELAKLFSQTGHPSRALTNEDSQKQRIEVTH 486 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 + Y+ V + G D P ++ I +LR T+S ++ Q +GRGLR PGK ++ Sbjct: 487 QLENGELEYIFTVDLFNEGIDIPSLNQIVMLRNTQSSIVFIQQLGRGLRKFPGKDYVTVI 546 Query: 355 DYAGNPHDLYAPEVGTPKGKS 375 D+ GN + Y + KS Sbjct: 547 DFLGNYKNNYLIPIALNGDKS 567 >UniRef50_C7BL24 Putative helicase n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BL24_PHOAA Length = 521 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 110/438 (25%), Positives = 183/438 (41%), Gaps = 88/438 (20%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQQE D + T +I L TGAGK+ + A L A ++V AH L++Q Sbjct: 3 LRDYQQEIFDLITSA----TTNDLIQLDTGAGKTPIEAALCGWAEHSIIV-AHRNILISQ 57 Query: 65 NHAKYQALGLEADIFAAGLKRK------ESHGK--VVFGSVQSVARNLDAFQGEFS---- 112 K A G+ D + R+ + HGK + G+ +++ ++D+ + Sbjct: 58 CSEKLAAFGIMHDTISTEHTRRRCMLAHKKHGKNFISRGNKKTLVASIDSLISRYKRGKL 117 Query: 113 --------LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLG------- 157 L+++DE H I D + L + + R++G TATP R+ Sbjct: 118 DLDTHLSWLIVIDEAHHIVPDNK------WGDLLDIFHNSRVIGFTATPGRMDGQSLSRK 171 Query: 158 KGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQ 217 KG ++ +V+ + L + I +L + ++ PE + R + + Sbjct: 172 KGGVFD----KLVQCE--YLKDNSISKLISKNILSGFKFYSPEFYETS------HRHRIR 219 Query: 218 SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAE 275 S+ L D + KK F R+ +M+ AT+++A+E L Sbjct: 220 SDTLLIANDPIKIYKK--------------FMNNRRTIMM-CATIKNAEEHAILFRDAGI 264 Query: 276 DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 A I+ + +I+ F A + + L NV ++ GFD P VD + + R T+S +Y+ Sbjct: 265 SAGCISSNMSAVNVSRIIDLFSAGKIKVLCNVDMVGEGFDLPAVDGLIMARQTKSFIMYR 324 Query: 336 QIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVG----------TPKGKSDNVP------ 379 Q +GR LR PGK +I+D GN +D P+ TP N P Sbjct: 325 QWIGRALRTNPGKDIAIIVDLVGNANDHGYPDDNIIWDIDNPPHTPSAIK-NAPCRYCGF 383 Query: 380 ----VQVFCPACGFANTF 393 + ++CP CG N Sbjct: 384 WYPIIDMYCPDCGEENIL 401 >UniRef50_A3VWG4 DNA/RNA helicase n=1 Tax=Roseovarius sp. 217 RepID=A3VWG4_9RHOB Length = 557 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 176/370 (47%), Gaps = 47/370 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTP---AVIVLPTGAGKSLVIAEL-ARLAR------GRVLV 54 LRPYQQEAV + FR T A +VL TG GK++V+AE+ A L R RVLV Sbjct: 139 LRPYQQEAV----SKFREGLTDTGRAQVVLATGLGKTVVMAEVVADLYRDNLIRDNRVLV 194 Query: 55 LAHVKELVAQNHAKY--QALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS 112 LA +EL+ Q + Q +G + + + F +VQSV +D F Sbjct: 195 LADKRELIRQLQFGFWHQLPKWVPTHMLSGDETPSFYDGITFATVQSVIGRIDDLP-SFG 253 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+++DE H IG + +++ L L P + + G TATP+R G G+ Sbjct: 254 LVLIDEAHHIG---STSFRRALDAL---EPPM-VGGATATPWR-GDGF------------ 293 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPE-RLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 D L + L + ++ YL+ + RL + + F +Q S+ +S LN++L Sbjct: 294 DIDELLGKPLVRLGISDGLRQKYLSEVDYRLLADNIDWGF--VQEISSHNYSLNQLNKKL 351 Query: 232 ---KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 + + HI+ R+G ++F+ TV+HA+ G L A I+ Sbjct: 352 LMPTRDEEAARHIVEVFG--GEKRRGGIVFSPTVDHAESFAGTLRGYGLRAEAISSRQEA 409 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 ERD L+ F+ L +V + G D P VDL+ +R T S ++ Q +GRGLRL+ Sbjct: 410 RERDRLMAMFRRGDIDVLASVDLFNEGVDVPDVDLVVFMRATHSRRIFVQQLGRGLRLSH 469 Query: 347 GKTDCLILDY 356 GK +++D+ Sbjct: 470 GKDKVIVMDF 479 >UniRef50_A9BYC8 Helicase domain protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BYC8_DELAS Length = 502 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 165/370 (44%), Gaps = 45/370 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARG-RVLVLAHVK 59 LR YQ +V+ + FR T V+ LPTG GKS V+ + A+G R++ + + Sbjct: 4 LVLRDYQVNSVEGLRDGFRAKHTRQVLTLPTGGGKSRVMEHMIHGVQAKGTRIMFVCERR 63 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 LV Q G++ + A R +V SVQ++ R + L+ +DE Sbjct: 64 VLVEQFSKHLDRAGIDHGVLMAKHWRFRPQCQVQIASVQTLERMKTL--PKVDLIFIDEV 121 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H + +Q + +L P LR++G TATPF G F Sbjct: 122 H-------ACMRQFVINLMLAQPDLRIIGATATPFHPALG----------------RHFT 158 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + + + + ++ G+L P V + ++ A G + + DL ++ ++I Sbjct: 159 NVVSTITMSRLVDEGHLVPFRVFVAREVSTEGLKVVA---GEWKKDDLE---QRGRQIVG 212 Query: 240 HIISQIME-----FAATRKGVMIFAATVEHAKEIVG--LLPAEDAALITGDTPGAERDVL 292 +++ + F RK + F+ VEH E+ + +A I+ + RD + Sbjct: 213 DVVADYVRISHEVFGEYRK-TICFSCGVEHGAELAQRFIDAGVNAVQISSEDAEEYRDQV 271 Query: 293 IENFKA--QRFRYLVNVAVLTTGFDAPHVDLIAILRP-TESVSLYQQIVGRGLRLAPGKT 349 +E F + +++VA+L+ GFD V+ + + RP +S S + Q+VGRG R GK Sbjct: 272 LEEFARPDTDLKVVISVAILSRGFDQTDVEHVILARPLKKSFSEHVQMVGRGARPHAGKQ 331 Query: 350 DCLILDYAGN 359 C+I D++GN Sbjct: 332 FCVIQDHSGN 341 >UniRef50_B9BQH5 Putative helicase n=2 Tax=Burkholderia multivorans RepID=B9BQH5_9BURK Length = 515 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 102/373 (27%), Positives = 158/373 (42%), Gaps = 55/373 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA----ELARLARGRVLVLAHVKE 60 LRPYQ E+V+A R V++ PTGAGK+ + A E+ + R V+ V Sbjct: 7 LRPYQLESVEALRAGMRAGHRAQVLMAPTGAGKTEIGAYLCDEVNKKGRRAAFVVDRVN- 65 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LV Q ++ G+ + A R+ + ++ S Q++ + F + LLIVDECH Sbjct: 66 LVDQTSQRFDKYGIPHGVIQADHWRRRGYERIQICSAQTLEKR--GFFPDLDLLIVDECH 123 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 ++ T L + LR++GL+ATPF G IY + Sbjct: 124 --------ATRRETTRLIQNRADLRVIGLSATPFTKGLSQIYT----------------N 159 Query: 181 CIYELPLRYMIKHGYLTP-----PERLDM---PVVQYDFSRLQAQSNGLFSEADLNRELK 232 + +I +L P +DM VV ++S + + G+ D+ E Sbjct: 160 LVNVTTTNRLIADNWLVPLQVYAARAVDMTGAKVVAGEWSDKEIEQRGMAIIGDIVSEWI 219 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGAER 289 + R + F K ++F+ATVEH E+ + + D R Sbjct: 220 DKTR---------LHFGGPVK-TIVFSATVEHGAELCRQFNEQGFNFQQISYRDGSDERR 269 Query: 290 DVLIENFKA--QRFRYLVNVAVLTTGFDAPHVDLIAILRP-TESVSLYQQIVGRGLRLAP 346 LIE F+ LV+ V T GFD + RP +S+S + Q +GR +R +P Sbjct: 270 RELIEEFRKPDSEIHGLVSCEVFTKGFDVSDILCGIAARPYRKSLSSHIQQLGRVMRPSP 329 Query: 347 GKTDCLILDYAGN 359 GKT L LD+ GN Sbjct: 330 GKTFGLWLDHCGN 342 >UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=C6BRN4_DESAD Length = 802 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 111/436 (25%), Positives = 174/436 (39%), Gaps = 79/436 (18%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR------------------L 47 R YQ A++ L K ++ L TG GK+ + +L+ Sbjct: 156 RYYQHNAINQALEAIAAGKDRILLTLATGTGKTFIAFQLSWKLFHSRWNIKEWREGEEIT 215 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEA--DIFAAGLKRK---ESHGKVVFGSVQSVAR 102 R R+L LA L Q + + A +A I +++K +G + F Q+ Sbjct: 216 RRPRILFLADRNILADQAYNSFSAFPEDALVRISPDAIRKKGMVPKNGNIFFTIFQTFMS 275 Query: 103 NLDAFQGE------------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT 150 +DA +G F +I+DECHR G +ES ++ IL + P ++L GLT Sbjct: 276 GIDA-EGNSAPNFGDYPPDFFDFIIIDECHRGGAKDESTWRGILEYFA---PAVQL-GLT 330 Query: 151 ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP------PERLDM 204 ATP R Y + F D +Y L+ I G+LTP LD Sbjct: 331 ATPRRTNNADTYGY-------------FGDPVYTYSLKDGINDGFLTPFKVVQIATTLDE 377 Query: 205 PVVQYDFSRLQAQ--SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATV 262 V D +Q + + E + NR ++ + R H + M+ + ++F AT Sbjct: 378 YVYTSDDEIIQGEVEEGKRYGENEFNRSIEIKAR-EEHRVKIFMDNIDQSQKTIVFGATQ 436 Query: 263 EHAKEIVGLL--------PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVA-VLTTG 313 HA + ++ P ++ D E+ + I + ++ + L+TG Sbjct: 437 HHAGILRDIINQQKTCSDPNYCVRVVAQDLAEGEKWLRIFQDNEKTIPTILTTSQKLSTG 496 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKG 373 DA +V I +LRP S+ ++QIVGRG RL GK I D+ PE Sbjct: 497 VDARNVRNIVLLRPVNSMIEFKQIVGRGTRLFDGKDYFTIYDFVKAYEHFNDPEW----- 551 Query: 374 KSDNVPVQVF-CPACG 388 D PV+ C CG Sbjct: 552 --DGEPVEPEPCSRCG 565 >UniRef50_C6WJC6 Type III restriction protein res subunit n=3 Tax=Actinomycetales RepID=C6WJC6_ACTMD Length = 525 Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 113/389 (29%), Positives = 172/389 (44%), Gaps = 46/389 (11%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-----LVIAELARLARGRVLVLA 56 ++ L P+Q+ A AV+ LPTG GK+ L+ L V+ LA Sbjct: 120 LYGLFPHQRRAAARIKELIYDGPRRAVLHLPTGVGKTRTGMNLICDHLRDREPTLVVWLA 179 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESH----------GKVVFGSVQSVARN--- 103 H +EL+ Q A+++ + + R + G V+ G ++V+ Sbjct: 180 HGQELLEQAAAEFEHAWSQLGNRPVSVVRMWGNAPTTLDDVADGVVILGLEKAVSAAKGS 239 Query: 104 ---LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW 160 L SL + DE H+I +Q+++ LT + P LLGLTATP G+ W Sbjct: 240 PEFLHTLASRSSLTVFDEAHQI---IAPTFQRVVDALT-IRPDASLLGLTATP---GRTW 292 Query: 161 --IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS-RLQAQ 217 I Q +K + Y P+ +I GYL P M V D L A+ Sbjct: 293 ADIAQDERLSDFFLRQKVMLEIEGYSNPVTALIDQGYLAKPT---MRTVASDAGLHLSAR 349 Query: 218 SNGLFSE-----ADLNRELKKQQRITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGL 271 + + A + L ++ ++ IM+ A + +++FAA+V+H + I + Sbjct: 350 DRQMLARSFDIPAGIVDALAHDEQWNLKVVQTIMDLLAREHRRILVFAASVDHCRLIAAV 409 Query: 272 LPAE--DAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVLTTGFDAPHVDLIAILRP 327 L A DA ITG++ R +I FK +R L N VLTTGFDAP I RP Sbjct: 410 LSAVSLDAEFITGESSPRHRKQVITRFKGTGRRPMILCNFGVLTTGFDAPAASAAVIARP 469 Query: 328 TESVSLYQQIVGRGLR--LAPGKTDCLIL 354 T+S+ LY Q+VGR +R A G + C I+ Sbjct: 470 TKSLVLYSQMVGRVIRGPKAGGTSTCEIV 498 >UniRef50_C4Y4K7 Putative uncharacterized protein n=1 Tax=Clavispora lusitaniae ATCC 42720 RepID=C4Y4K7_CLAL4 Length = 572 Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 130/280 (46%), Gaps = 34/280 (12%) Query: 92 VVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKV--NPHLRL 146 V+ GSV ++ R L + +F LI+DECH S + +IL + + + + + Sbjct: 38 VIVGSVMTLVRLTRLHKYDPSQFRALILDECHHAT---ASSWTKILNYFGALEDDSDILV 94 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKAL---FRDCIYELPLRYMIKHGYLTPPERLD 203 LG TAT R D AL F ++E LR M+++ L + Sbjct: 95 LGFTAT----------------FERSDGTALNKVFERIVFERSLRTMVENKELCDV-KFS 137 Query: 204 MPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATR--KGVMIFAAT 261 V D S+++ ++ G + L++ + + I I E K +IF Sbjct: 138 TISVDLDLSKVR-RNMGDYVATHLSKAVNVSE-INLRIALSYKELKTKLGFKSTLIFCVD 195 Query: 262 VEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHV 319 +EH K + G+ +A +TG+T ER ++E+FK + L NV V T G D P++ Sbjct: 196 IEHCKTLCGVFQENGVNAQYVTGETVKYERQAILEDFKNGKIDVLCNVLVFTEGTDIPNI 255 Query: 320 DLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 D + + RPT+S L Q++GRGLRL K+ C ++D G Sbjct: 256 DSLILARPTKSRPLLVQMIGRGLRLHKDKSYCHVIDMVGT 295 >UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKE3_SEBTE Length = 993 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 154/345 (44%), Gaps = 37/345 (10%) Query: 27 AVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGL-- 83 +IV TG GK+ + A ++ ++ L +AH +EL+ + + L D G Sbjct: 290 GLIVAATGTGKTYLAAMDILKMNPKSFLFIAHREELINNAFNVFSKI-LPYDKNEYGFLT 348 Query: 84 -KRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVN 141 K + + +F ++QS+ +N + F + F +I+DE H + S Y+ ++ + N Sbjct: 349 GSEKNYNKRFMFSTIQSLYKNTEYFSKDAFDYIIIDEFHH---SKASTYEAVINYF---N 402 Query: 142 PHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY----ELPLRYMIKHGYLT 197 P +LGLTATP R+ D K + C Y E+ LR +++ L+ Sbjct: 403 PFF-MLGLTATPERM----------------DGKDILELCDYNLIGEMGLREALEYDLLS 445 Query: 198 PPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT-PHIISQIMEFAATRKGVM 256 P + D+ ++ SNG + + L +L +R+ H + + F R + Sbjct: 446 PFHYFGVIDDTVDYEQIPF-SNGKYDDKILGEKLSIPKRVDFIHNKIEKIGFDGDRVKSI 504 Query: 257 IFAATVEHAKEIVGL--LPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGF 314 F A ++HA+ + L IT +R +I F+ L V + G Sbjct: 505 AFCANIKHAEFMKEQFRLKGYTTESITAKDSQLKRKEVINAFQTGEIEILCVVDIFNEGI 564 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 D P V+L+ LRPT S +++ Q +GRGLR K ILD+ GN Sbjct: 565 DIPDVNLLLFLRPTMSSTIFIQQLGRGLRKVKNKDFVTILDFIGN 609 >UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cellular organisms RepID=B1IDR5_CLOBK Length = 1002 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 175/376 (46%), Gaps = 51/376 (13%) Query: 3 FTLRP--YQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHV 58 + L+P Q EA+ L R + + +++ TG GK+ + A EL R L + H Sbjct: 252 YKLKPNKMQVEAIQG-LEKLRENGQDKGLLISATGTGKTYLSAFELRNYNPKRALFIVHR 310 Query: 59 KELVAQNHAKYQALGLEADIFAAGL---KRKESHGKVVFGSVQSVARN--LDAF-QGEFS 112 +++ Q ++ + D + G+ K+ +F ++Q+++++ L +F + EF Sbjct: 311 EQIAKQALNSFR--NVFGDTRSMGILSGTSKDVDKDFIFCTIQTLSKDEVLQSFGKNEFD 368 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVR 171 +I+DE H+ G + YQ+I+ + NP LLG+TATP R I++ F+Y+ Sbjct: 369 YIIIDEVHKAG---ANSYQKIVNYF---NPKF-LLGMTATPERSDDFDIFKMFNYN---- 417 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 YE+ L+ ++ L P + V D L +++ + L Sbjct: 418 ---------IAYEIRLQRALEEDLLCPFHYFGVSDVTIDGIELDDKTDFKY--------L 460 Query: 232 KKQQRITPHIISQI--MEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGA 287 ++R+ HII +I + R +IF + + AKE+ + + + TG++ Sbjct: 461 VAEERV-KHIIDKINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVGLTGESSQE 519 Query: 288 ERDVLIENFKA----QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 ER+ IE + Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR Sbjct: 520 EREKAIERLEQDETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTKSSIIFVQQLGRGLR 579 Query: 344 LAPGKTDCLILDYAGN 359 K +I+D+ GN Sbjct: 580 KNKFKEYVVIIDFVGN 595 >UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax=Gammaproteobacteria RepID=A1SXM9_PSYIN Length = 967 Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 153/342 (44%), Gaps = 28/342 (8%) Query: 27 AVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKR 85 ++VL TG GK+ + A ++ +L R+L +AH +E++ Q + L E + Sbjct: 244 GLVVLATGMGKTWLAAFDVLQLKAKRILFVAHREEILLQAQRTFAQLMPEKSSGFYNAQN 303 Query: 86 KESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNP 142 ++ V+F SVQ++ R +L F + F ++VDE H Y +L + NP Sbjct: 304 RQKGADVLFASVQTIGRENHLQQFSKDHFDYVVVDEFHHAS---APVYSNLLAYF---NP 357 Query: 143 HLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERL 202 LLGLTATP R + I + +V YE L I L P + Sbjct: 358 DF-LLGLTATPERTDQSDILCLCDNNLV------------YERNLTQGIDDKILAPFKYY 404 Query: 203 DMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATV 262 + ++ + + NG F ++ + Q+R + HI+ + +F ++ + F +V Sbjct: 405 GIWDESVNYQAIPWR-NGRFDPESIDNQFATQKRAS-HILKKWHQF--KQQKTLAFCISV 460 Query: 263 EHAKEIV-GLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDL 321 +HA + A A+ R+ + + + +V + G D P +D Sbjct: 461 KHADYMAESFNNAGIKAVSVHSKSEIRRNEALTQLQNGTLEVMFSVDLFNEGTDLPALDT 520 Query: 322 IAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 I +LRP+ S L+ Q +GRGLRL KT ++LD+ GN H Sbjct: 521 ILMLRPSNSKILFLQQLGRGLRLHKNKTHLVVLDFIGNHHSF 562 >UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027W9_SOLUE Length = 570 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 43/378 (11%) Query: 5 LRPYQQEAVDATLN-HFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHV 58 LR YQ+ A+ + L + A++V+ TG GK+ V AE R R R LVLAH Sbjct: 140 LRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYRRMRETHPTLRALVLAHT 199 Query: 59 KELVAQNHAKYQALGLEADIFAA--GLKRKESHGKVVFGSVQSVARNLDA---FQGEFSL 113 +LV Q + +++I G + + + F + SVA L L Sbjct: 200 NDLVYQLERAFWPCLDKSEITGVWNGYEVPDPEASLTFACIDSVASKLQVSGRLDLGVDL 259 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +IVDECH G DE + L ++ P L+G+TATP+R I+ Sbjct: 260 VIVDECHHAGSDEYRVVLEALRCGSQDGPF--LIGMTATPWRPDGTSIH----------- 306 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 +LF + + + + +K G+L+ + M V ++ L + + LNR + Sbjct: 307 --SLFGEPVSCVDIVQGLKMGWLSNVD-YRMHVDNINWQELNRVHH--LTPRGLNRTIFI 361 Query: 234 QQRITPHIISQIME--FAATRKGVMIFAATVEHA----KEIVGLLPAEDAALITGDTPG- 286 Q+ ++ ++ E + ++F ++HA + G+ A AL G +PG Sbjct: 362 QE-WDDAVVQKLKETWYEIPHARAIVFCGNIDHAITMRDRVNGVGFARAEALYAG-SPGA 419 Query: 287 -----AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 A+R ++ +F L V +L G D P V++ R T S ++ Q +GRG Sbjct: 420 PRLSHAQRSKILADFHDGHAGVLCAVDLLNEGIDLPDVNICVFQRVTHSRRIFVQQLGRG 479 Query: 342 LRLAPGKTDCLILDYAGN 359 LRLA GK ++LD+ + Sbjct: 480 LRLASGKDRVIVLDFVSD 497 >UniRef50_D1S9N6 Helicase domain protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S9N6_9ACTO Length = 1568 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 110/371 (29%), Positives = 168/371 (45%), Gaps = 46/371 (12%) Query: 27 AVIVLPTGAGKSLVIAE-LARL-----ARGRVLVLAHVKELVAQ----NHAKYQALGLEA 76 A++ LPTGAGK+ V E + RL +G VL +A +EL Q ++ LG E Sbjct: 1192 AMVELPTGAGKTRVATETVLRLFMEGRLQGPVLWIAQSQELCEQAVQTTSLVWRGLGDER 1251 Query: 77 DIFAAGLKRKES--HGKVVFGSVQSVARNLDA---------FQGEFSLLIVDECHRIGDD 125 + L F + + LD + + S +I+DE HR G Sbjct: 1252 PLTIGRLWEGNDVHEPDTEFSFIVATDAELDVGVIRDPDYDWLRQASAVIIDEGHRAGGS 1311 Query: 126 EESQYQQILTHLTKVNPHLR--LLGLTATPFR-----LGKGWIYQFHYHGMVRGDEKALF 178 E +Y +IL L L+GL+ATPF+ K + +F + ++ + Sbjct: 1312 E--RYTRILNWLGVAGRGWERPLVGLSATPFKGASESATKALVSRFGGRKLEAFEQDNAY 1369 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDM-PVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 R + EL + ++H L P +D+ P + D + L+ + + R+ + + Sbjct: 1370 RR-LAELGVLARVRHRVL-PGIHVDLQPDERKDATSLRRLKQSVMDR--IGRDQARMSVL 1425 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 HI+S ++ V++F V A+ + L D AA ++G T ER +IE Sbjct: 1426 VDHILSLDPDWP-----VLVFTPNVLSAQVLAATLRYRDVTAAAVSGQTGRQERRDIIEK 1480 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP---GKTDCL 352 FK + R L N +L GFDAP V + I RPT S + Y Q+ GRGLR P GK +CL Sbjct: 1481 FKNGQIRVLANCDLLIQGFDAPGVRALYIARPTFSPNAYIQMAGRGLR-GPKNGGKEECL 1539 Query: 353 ILDYAGNPHDL 363 I+D A N DL Sbjct: 1540 IVDMADNFGDL 1550 >UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Tax=Bacteria RepID=B0TQK0_SHEHH Length = 1072 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 162/352 (46%), Gaps = 39/352 (11%) Query: 28 VIVLPTGAGKSLV----IAEL-ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG 82 ++V TG GK+++ AE A + L LAH +E++ Q + Y+ + L+++ F Sbjct: 351 LVVAATGTGKTIISAFDFAEFYAANPEAKFLFLAHREEILKQARSAYRGV-LKSNQFGEL 409 Query: 83 L--KRKESHGKVVFGSVQSVARNLDAFQ---GEFSLLIVDECHRIGDDEESQYQQILTHL 137 L + K +F S+QS+ L Q F +++DE H I S Y+ +L H Sbjct: 410 LVGQNKPQKFNQLFASIQSLNNQLATIQLTEDYFDYIVIDEVHHIA---ASSYRPVLQHF 466 Query: 138 TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY-ELPLRYMIKHGYL 196 P + L+GLTATP R H + D F + I E+ L I +L Sbjct: 467 ---KPQI-LVGLTATPER---------HDGADILKD----FCNVIAAEIRLPEAINQRHL 509 Query: 197 TPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAA--TRKG 254 +P + + D +++ + + G + A+L + + I+ + E ++ Sbjct: 510 SPFQYFAVDD-DTDLTKI-SWAKGRYDIAELTKLYTYNDQRVLRILQSLEEIVTDISQMR 567 Query: 255 VMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTT 312 + F + +HA I ++ ++T D ER++L + K++ L V + Sbjct: 568 ALAFCVSKDHANFIAQKFNLKNIPCGVLTSDN-SKEREILQQRLKSKEINVLFVVDIFNE 626 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 G D P +D + LRPTES++++ Q +GRGLRL K C ++D+ GN Y Sbjct: 627 GVDIPELDTLLFLRPTESLTVFLQQLGRGLRLTKDKECCTVIDFVGNSRPEY 678 >UniRef50_A1CDN6 DEAD/DEAH box helicase, putative n=2 Tax=Aspergillus RepID=A1CDN6_ASPCL Length = 539 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 26/282 (9%) Query: 82 GLKRKESHGKVVFGSVQSVARN--LDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTH-- 136 G G ++ SVQ++AR L F +F L++VDE H I Y++ LTH Sbjct: 2 GTSHATGTGDIIVASVQTLARGTRLSKFDPAQFKLVLVDEAHHI---VAPSYREALTHFG 58 Query: 137 LTKVNPHL-RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGY 195 + K +P L+G++AT R Y G+ G A +Y MI + Sbjct: 59 VDKESPDSPALVGVSATFSR----------YDGLKLG---AAIDHIVYHKDYMDMIDEKW 105 Query: 196 LTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV 255 L + + S+++ S G F+ L++ + + + + + A RK Sbjct: 106 LANA-FFTTVRSEANLSKVKKDSFGDFAIGSLSKAVNTES-VNNITVRAWLANAQDRKST 163 Query: 256 MIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTG 313 ++F V H KE+ DA IT T R + F+ + + L+N + T G Sbjct: 164 LVFCVDVAHTKELTETFRNYGIDARYITAKTSREARMEQLRAFRDREYPVLLNCGLFTEG 223 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 D P++D + + RPT S +L Q++GRGLRL PGK DC ++D Sbjct: 224 TDIPNIDCVLLARPTRSRNLLIQMIGRGLRLYPGKDDCHVID 265 >UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax=Leptotrichia RepID=C7NAB7_LEPBD Length = 1090 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 90/326 (27%), Positives = 151/326 (46%), Gaps = 36/326 (11%) Query: 45 ARLARGRVLVLAHVKELVAQNHAKY-QALGLEADIFA---AGLKRKESHGKVVFGSVQSV 100 ++++ + L +AH +EL+ + + L ++ + F GLK E + ++F S+QS+ Sbjct: 360 SKISNIKFLFIAHREELLENAMNVFSRILKIDKNKFGRIYGGLK--EINKSMIFASIQSL 417 Query: 101 ARNLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + F+ F +IVDE H D Y + L++ LLGLTATP R+ Sbjct: 418 RNCYNEFKHNFFDYIIVDEFHHSMSD---SYLKTLSYF----QSKFLLGLTATPKRMDGK 470 Query: 160 WIYQFHYHGMVR--GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQ 217 I + +V G ++AL D I +P Y + Y + YD + Sbjct: 471 DILSLCDYNVVDEIGIKEALEEDLI--VPFHYFGVNDY----------TINYDNIPYK-- 516 Query: 218 SNGLFSEADLNRELKKQQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAE 275 NG ++E L L R T +I+ +I F + F +EHA + + Sbjct: 517 -NGKYNEKILLENLLLNTR-TDYIVEKINRFGFDGNELSAVAFCQNIEHASFMKEEFTKK 574 Query: 276 --DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSL 333 +A+IT + +R +++ FK ++ L V +L G D P ++L+ LRPT S ++ Sbjct: 575 GYKSAVITANISSNDRAEILDKFKNKKIEILCVVDILNEGIDIPTINLLLFLRPTMSSTI 634 Query: 334 YQQIVGRGLRLAPGKTDCLILDYAGN 359 + Q +GRGLR A K I+D+ GN Sbjct: 635 FIQQIGRGLRKAENKDFVTIIDFIGN 660 >UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GJE0_SORC5 Length = 1030 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 172/373 (46%), Gaps = 48/373 (12%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARL----ARGRVLVLAHVKEL 61 P+Q+ ++ R ++V TG GK+++ A + ARL R R+L +AH E+ Sbjct: 313 PFQERLLEQIALSRERGHHRNLLVSATGTGKTVMAAIDYARLREALPRARLLFVAHRGEI 372 Query: 62 VAQNHAKYQALGLE----ADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAFQ-GEFSLLI 115 + Q+ A ++ GL +++ G R + VF S+QS+ A LD F ++I Sbjct: 373 LEQSLATFRH-GLRDHAFGELWVGG--RHPRRFEHVFASIQSLSAAGLDDLDPSHFDVVI 429 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGK----GWIYQFHYHGMVR 171 +DE H Y+ +L +V P + LLGLTATP R GW R Sbjct: 430 IDEFHHAA---APSYRVLLE---RVRP-VELLGLTATPERSDGLPLLGWFDD-------R 475 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ---YDFSRLQAQSNGLFSEADLN 228 + D I + L + +G + D+P + YD +GL N Sbjct: 476 IAAELRLWDAIDQHRLVPFVYYGIHDGLDLRDVPWRRGRGYDV-------DGLSKLLTAN 528 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPG 286 +Q + +++ + + R + F ++EHA+ + + A + GD+P Sbjct: 529 DVWARQ--VVAQLVAHVDDTRTIR--ALGFCVSIEHARFMARVFHEAGVAATAVWGDSPD 584 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 ER + + A+R + +V + G D P VD + +LRPT+S +L+ Q +GRGLR + Sbjct: 585 DERRAALADLGARRINVVFSVDLFNEGIDVPAVDTLILLRPTDSPTLFLQQLGRGLRRSA 644 Query: 347 GKTDCLILDYAGN 359 GKT C +LD+ G+ Sbjct: 645 GKTVCTVLDFVGH 657 >UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019764F2 Length = 1061 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 109/385 (28%), Positives = 177/385 (45%), Gaps = 43/385 (11%) Query: 9 QQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNH 66 Q+EA+ A+L R + A+IV TG GK+ + A R R R +L +A + ++ Sbjct: 252 QKEAL-ASLKKLREQGEHRAIIVSATGTGKTYLSAFDVREYRPRRMLYIAQQQMILKAAM 310 Query: 67 AKYQ-ALGL-EADIFAAGLKRKESHGKVVFGSVQSVARNLDAF----QGEFSLLIVDECH 120 YQ LG ++++ K+ + VF +VQ++ R +A EF ++VDE H Sbjct: 311 KSYQKVLGCPQSELGLYTGTSKQQDRRYVFATVQTM-RQPEALAQFASDEFDYVLVDEVH 369 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD--EKALF 178 G + YQ+++ H + +LG+TATP R I++ H + +KAL Sbjct: 370 HAGAE---GYQRVIDHFRDAD---FMLGMTATPERTDGINIFELFGHNIAYEIRLQKALD 423 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSR-LQA-QSNGLFSEADLNRELKKQQR 236 + + P Y YL E D + + D S+ L A +S L E +L +QR Sbjct: 424 ENML--CPFHYYGVAEYLGSDEDADQDMHRLDVSQGLDAKESKQLKYEIG---QLATEQR 478 Query: 237 ITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLL----------PAEDAALITGDT 284 + +II ++ E+ V ++F + E A E+ L P AA+ + D Sbjct: 479 VR-YIIDKLQEYGQFGIPVTGLVFCSRQEEAHELSRLFNEHWNQQAERPYRTAAVTSKDV 537 Query: 285 PGA-----ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 G +RD + YL V + G D P V+ I +LR TES ++ Q +G Sbjct: 538 NGKPLSQEKRDEYVRRLTDGELDYLFTVDMFNEGVDIPAVNQIVMLRSTESSIIFTQQLG 597 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLY 364 RGLR P K +++D+ GN ++ Y Sbjct: 598 RGLRKFPYKDSVVVIDFIGNYNNNY 622 >UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobacillus fermentum RepID=D0DSQ0_LACFE Length = 975 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 169/365 (46%), Gaps = 48/365 (13%) Query: 24 KTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHAKYQA-LGLEAD---I 78 K ++V TG GK+ + A R A+ R+L LAH ++++ ++ ++ LG + D + Sbjct: 236 KDRGLVVSATGTGKTYLGAFDVRAAKPKRMLFLAHREQILQKSCQSFKNILGGDPDNFGL 295 Query: 79 FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRIGDDEESQYQQILT 135 + G + K + K +F SVQ+++R +L F +F +++DE H G + YQ+I+ Sbjct: 296 YTGGARDK--NAKYLFASVQTLSREEHLHRFSPDDFDYILIDEVHHAGAES---YQRIMD 350 Query: 136 HLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIYELPLRYMIKHG 194 + T P LG+TATP R I+ FHY + YE+ L+ ++ Sbjct: 351 YFT---PKF-FLGMTATPERSDDFNIFNLFHY-------------NVAYEIRLQQALELN 393 Query: 195 YLTP-----------PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 L P ++ + V QY +R Q E L ++R+ +I+ Sbjct: 394 MLAPFHYVGLTDYAFADQYEEEVDQYR-NRKQGSKPSRKQEQRAVELLTSKERVN-YILE 451 Query: 244 QIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQ 299 Q + + + ++F ++V A+ + A A ++G G R ++ + Sbjct: 452 QTDYYGYSGPVLHGLVFCSSVAEAEALARAFTAAGHPAKALSGADNGDRRRQVVHELENG 511 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 Y++ V + G D P V+ + LR T+S +Y Q +GRGLR PGK +LD+ GN Sbjct: 512 LIEYIITVDIFNEGIDIPCVNQVVFLRNTQSAIVYVQQLGRGLRKYPGKEYVEVLDFIGN 571 Query: 360 PHDLY 364 + Y Sbjct: 572 YKNNY 576 >UniRef50_A0Q726 Type I restriction-modification system, subunit R (Restriction) n=25 Tax=Proteobacteria RepID=A0Q726_FRATN Length = 782 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 110/417 (26%), Positives = 174/417 (41%), Gaps = 78/417 (18%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RL------------ARG 50 T R YQ+ AV T++ + ++ L TG GK+ + ++A RL + Sbjct: 149 TPRYYQKIAVQKTIDAISSGQDRILLTLATGTGKTYIAFQIAYRLLEARWRKNDIGNKKP 208 Query: 51 RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKES-----HGKVVFGSVQSVARN-- 103 R+L LA L+ Q ++ + + L +K G V F Q+VA N Sbjct: 209 RILYLADRNILIDQAINEFNPIENDCKRIQGKLIKKNGGKVPLSGNVFFAIYQAVAENKN 268 Query: 104 ------------LDAFQGE-----FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL 146 L A+ + F L+I+DECHR +++S ++ I+ + + HL Sbjct: 269 RQYLATDSEDDSLTAYYKQYPADFFDLIIIDECHRGSANDDSSWRDIIEYFSSA-VHL-- 325 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP--PERLDM 204 GLTATP R V GD F + IYE L+ I G+LTP +R+ Sbjct: 326 -GLTATPKR-------------DVNGDTYDYFGEPIYEYSLKDGINDGFLTPYKVKRITT 371 Query: 205 PVVQYDFSRLQAQS----NGLFSEADLNRELKKQQR---ITPHIISQIMEFAATRKGVMI 257 + +Y + + N ++S +D + + QQR I I+ I + T ++ Sbjct: 372 NIDEYRPNTHDSVDGDLPNKVYSISDWEKTITSQQRHELIAKTILDNINKMDKT----IV 427 Query: 258 FAATVEHAKEIV-------GLLPAEDAALITGDTPGAERDVLIENFKAQRFRY---LVNV 307 F HA E+ + + +T + RD L E F+ L + Sbjct: 428 FCKNQPHALELKLAIDRFKKVKTPDYCVRVTSEEGQIGRDYL-EQFQDNDKDIPVILTSS 486 Query: 308 AVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 +LTTG DA +V I + P ES+ ++QI+GRG R GK ILD+ Y Sbjct: 487 KMLTTGVDAKNVRNIVLTAPIESMIEFKQIIGRGTRTFEGKDFFTILDFVKASDKFY 543 >UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ55_9ACTO Length = 1087 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 99/359 (27%), Positives = 159/359 (44%), Gaps = 50/359 (13%) Query: 28 VIVLPTGAGKSLVIA-ELARLAR---------GRVLVLAHVKELVAQ------NHAKYQA 71 ++V TG GK+++ A + RL R L +AH +E++ Q + K Sbjct: 350 LLVAATGTGKTVIAALDYKRLRERFMKNTGRSPRTLFVAHRQEILKQARKTFIDVVKVSN 409 Query: 72 LGLEA-DIFAAGL---KRKESHGKVVFGSVQSV-ARNLDAFQGEF-SLLIVDECHRIGDD 125 LG+ D FA + HG +VF S+QS+ ++ L+ F +F L+I+DE H Sbjct: 410 LGISTTDNFALNSLDSRLLAEHGNLVFASIQSLHSKTLEGFPNDFFDLIIIDEFHHAS-- 467 Query: 126 EESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK---ALFRDCI 182 Y++++ H P LLGLTATP R + + G + + + AL D + Sbjct: 468 -APTYKKLIEHFA---PQ-ELLGLTATPERGDGTNVAVEFFSGRIASELRLWDALNADLL 522 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 +P Y + T ++ + +YD L G AD+ + + +P + Sbjct: 523 --VPFHYFVNSDD-TDLSKVRLSKGEYDVKSLNDLYVGNEHRADIIMRAIRDKVPSPDTM 579 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQR 300 I F A+VEHA + + AA +T T RD I + Sbjct: 580 RAI-----------CFCASVEHANYMADCFNRVNLPAAAVTAKTEN--RDTHITALREGT 626 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 R + V + G D P VD + +LRPT+S +++ Q +GRGLR + GK +LD+ GN Sbjct: 627 LRVICAVDIFNEGVDIPEVDTLLMLRPTQSSTIFLQQLGRGLRRSFGKDLLTVLDFVGN 685 >UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBM3_DESAH Length = 1040 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 178/387 (45%), Gaps = 46/387 (11%) Query: 3 FTLRPY--QQEAVDATLNHFR--RHKTPAVIVLPTGAGKSLVIA-----ELARLARGRVL 53 F + PY QQE +D TL R H+ ++V TG GK+++ A R + R+L Sbjct: 308 FNIVPYVYQQEILD-TLKAERALHHRWRNLVVAATGTGKTIIAAFDFKQSFERPGQKRML 366 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGL-KRKESHGKVVFGSVQSV-ARNL-DAFQGE 110 +AH +E++ Q+ ++ + + + + + H + +F SVQ++ AR L D + Sbjct: 367 FVAHREEILVQSRGVFRNILRDHNFGELWVGNHRPDHLEKLFVSVQTLNARALWDQVPPD 426 Query: 111 F-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHG 168 F ++VDE H YQ++L + T P + LLGLTATP R GK + FH Sbjct: 427 FFDYIVVDEFHH---GAAPSYQRLLDYFT---PKI-LLGLTATPERADGKDILAWFHG-- 477 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 R C E+ L I L+P + + D+S ++ Q G + L Sbjct: 478 ----------RIC-SEIRLPDAINQKLLSPFQYFGISDC-VDYSHVKWQRGG-YDRNGLE 524 Query: 229 RELKKQQRITPHIISQ-----IMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALIT 281 + L I +I + +++ +A R + F + HA + A A +T Sbjct: 525 KLLITGDDIRARLIIEKAKEILLDVSAARG--ICFCVSQAHAGYMAEKFQAAGISAMALT 582 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 +T R ++ + + +L V + G D P +D + LRPTES++++ Q +GRG Sbjct: 583 AETARDVRRAAVKRLQQRDVNFLCVVDLFNEGVDIPEIDTVLFLRPTESLTVFLQQLGRG 642 Query: 342 LRLAPGKTDCLILDYAGNPHDLYAPEV 368 LRL GK +LD+ G H + E+ Sbjct: 643 LRLCEGKEHLTVLDFIGQAHQKFNFEI 669 >UniRef50_A6LX80 Type III restriction protein, res subunit n=15 Tax=cellular organisms RepID=A6LX80_CLOB8 Length = 845 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 50/351 (14%) Query: 27 AVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRK 86 ++V TG GK+ + A ++ A RVL +AH +E++ Q ++ + DI K Sbjct: 258 GLVVAATGVGKTYLAAFDSKEAE-RVLFVAHREEIIKQAAISFKNVRNSDDIGFFYNNTK 316 Query: 87 ESHGKVVFGSVQSVARNLDAFQGE-------FSLLIVDECHRIGDDEESQYQQILTHLTK 139 ++ ++F VQ++ + D + E F +++DE H S Y++I+ + T Sbjct: 317 DNDKSMIFSLVQTLGK--DEYLKEEYFTRDYFDYIVIDEFHHAV---SSNYRKIIDYFT- 370 Query: 140 VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC----IYELPLRYMIKHGY 195 P LLGLTATP RL D K +F C +YE+ L I GY Sbjct: 371 --PKF-LLGLTATPERL----------------DSKDVFSLCDYNTVYEIRLSDAINKGY 411 Query: 196 LTPPERLDM--PVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRK 253 L P + V YD + NG +++ +L L +R I++ ++ + R Sbjct: 412 LVPFRYYGIYDETVNYDEVEFR---NGKYNDKELEEALMLNKR-GELILNHYKKYNSNR- 466 Query: 254 GVMIFAATVEHAKEIVGLLPAE---DAALITGDTP--GAERDVLIENFKAQRFRYLVNVA 308 + F + +HA+ + A+ +G+ R + + + +V Sbjct: 467 -ALGFCTSRKHAEYMAKYFCENRITSLAVYSGENGEYSENRTEALNKLTKGEVKVIFSVD 525 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 + G D P +D++ LRPT+S +++ Q +GRGLR K +LD+ GN Sbjct: 526 MFNEGLDIPSIDMVMFLRPTQSPTVFLQQLGRGLRKYKDKKYLNVLDFIGN 576 >UniRef50_C5A7E8 DNA repair helicase, XPB-rad25-like protein n=9 Tax=Thermococcaceae RepID=C5A7E8_THEGJ Length = 462 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 166/370 (44%), Gaps = 44/370 (11%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 ++LR YQQ AV L R K V+ LP G+GK++V + L++ H KEL+ Sbjct: 93 YSLRRYQQRAVRKAL----REKM-GVLALPVGSGKTVVGLRIIHELDLSALIVVHTKELL 147 Query: 63 AQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAFQGEFSLLIVDECH 120 Q K + L G++A I K + V +Q++ +R D ++++++ DECH Sbjct: 148 YQWAEKVEELLGVKAGIVGDN---KWNEENVTVAMIQTLLSRGADKLNNDYAIVMFDECH 204 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE---KAL 177 R E ++ Q+ L P + GL+ATP+R VRG+E +A+ Sbjct: 205 RTSAAE--KFYQLGISL----PQVYRFGLSATPWR-------------RVRGEEIKIEAV 245 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 IYE+ +I+ G+L P R ++ + + L+ + +N E + + Sbjct: 246 VGPIIYEVKAEDLIREGFLAKP-RFEVITYESRMPSFSERYKELYEDVIMNNEERNRA-- 302 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIEN 295 I+++ E V+I +EH K + +L E A ++ +P R ++E Sbjct: 303 ---IVAKAKELVRKGHRVLIDVKRIEHGKILKEMLDREGVKAEFLSSQSPN--RWEVLEA 357 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 +K L++ +L G D P + I + +S + Q +GR LR G +I+D Sbjct: 358 YKNGEIPVLIS-TLLKEGVDIPEISAIILAGGGKSDIMTIQTIGRALRPKWG-MKAVIVD 415 Query: 356 YAGNPHDLYA 365 A + LY Sbjct: 416 VADDDPLLYT 425 >UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3G7_ERYRH Length = 950 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 165/377 (43%), Gaps = 38/377 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA++ N ++ T A+++ TG GK+ + A ++ + ++L + H +++ Sbjct: 220 QSEALENLKNFRKQGATKALVISATGTGKTYLAAFDVKAIKPKKMLFIIHREQVAKDAMN 279 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 +Q++ + + K+ +F ++Q+++R NL F Q EF +++DE HR Sbjct: 280 TFQSIISDRSMGLFSGNYKDDQFDFLFTTIQTISRPQNLQKFKQNEFDYIVIDEAHR--- 336 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIY 183 S L + P LG+TATP R +++ F Y + Y Sbjct: 337 ---SVANSYLNVMEYFKPKF-FLGMTATPERSDSLNVFELFDY-------------NIAY 379 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN-GLFSEADLNRELKKQQRITPHII 242 E+ L+ ++ L P + +Q D + S G D + K + H Sbjct: 380 EIRLQKALEENMLVPFHYFGITDLQIDGEIINDHSQFGQLVSEDRIEHILKYTKYYGHCG 439 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIENFKAQR 300 +++ KG+M F +T + A E+ L I+ G+ ER+ I + Sbjct: 440 NKL-------KGLM-FCSTNQEASELSKKLNIRGIRTISLSGENSQEERENAIVRLTSDD 491 Query: 301 --FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y++ V + G D P ++ + +LR TES ++ Q +GRGLRL+ K +++D+ G Sbjct: 492 GDLNYILTVDIFNEGIDIPEINQVVMLRSTESSIVFIQQLGRGLRLSKNKDYVVVIDFIG 551 Query: 359 NPHDLYAPEVGTPKGKS 375 N + Y + +S Sbjct: 552 NYSNNYMIPIALSGNRS 568 >UniRef50_C8QW89 Type III restriction protein res subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QW89_9DELT Length = 469 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 163/367 (44%), Gaps = 52/367 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LRPYQ +A +A L + V+ TG+GK++V + + +VL H KEL+ Q Sbjct: 121 LRPYQHQAREAILG-----RDFGVLEAGTGSGKTVVACAVIAARQQPTIVLVHTKELLYQ 175 Query: 65 NHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIG 123 + + LGLEA + G +R E + S + +AR L F L VDECHR+ Sbjct: 176 WSERIGEFLGLEAGLLGDGHRRLEPVTVAIVNSARRMARELPPL---FGQLCVDECHRVP 232 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHY----HGMVRGD---EK 175 + T + +LGL+AT +R G + F+ H + GD Sbjct: 233 SS-------LFTEVVTAFDCRYMLGLSATAYRRDGLTPLINFYLGDRVHRIDTGDLQRSG 285 Query: 176 ALFRDCIYELP--LRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 A+ + + + P RY+ + Y + M + D R N L +E D+ RE + Sbjct: 286 AVLKARLIQRPTAFRYLYRGNY-----QALMKALTADQKR-----NQLIAE-DIAREAR- 333 Query: 234 QQRITPHIISQIMEFAATRKG-VMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERD 290 + + AT G +++ + V H +E+ LL D ++TG TP +R Sbjct: 334 ---------ATVGGNGATETGTILVVSDRVRHCQELARLLEQRGVDCQILTGATPAEQRS 384 Query: 291 VLIENFKAQRFRYLVN-VAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 L+ + R R L++ V ++ GFD P + + + P + Q+VGR LR A GK Sbjct: 385 ELVAAIQEGRVRVLISTVQLIGEGFDCPGLRSLFLTTPIKFTGRLLQVVGRILRPAAGKQ 444 Query: 350 DCLILDY 356 + DY Sbjct: 445 PT-VYDY 450 >UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepID=Q7UED5_RHOBA Length = 1071 Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 101/374 (27%), Positives = 171/374 (45%), Gaps = 41/374 (10%) Query: 3 FTLRPY--QQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIA-ELARLARG-----RVL 53 F LRP+ Q+E +D ++K +IV TG GK+++ A + AR+AR R+L Sbjct: 350 FDLRPFPFQEEILDIIAAERNVQNKYRHLIVAATGTGKTMIAAFDYARVAREAGRKPRLL 409 Query: 54 VLAHVKELVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAFQG 109 +AH KE+++Q ++ + + D+ G + E H + +F S+QS +RNL Sbjct: 410 FIAHRKEILSQAMVAFRCVLRDQNFGDLLVDG-SQPEQH-EHLFCSIQSYNSRNLQMESA 467 Query: 110 E-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 E F ++VDE H YQ +L H V P + LLGLTATP R + + + + G Sbjct: 468 EQFEYVVVDEFHHAA---APSYQSLLEH---VQPQI-LLGLTATPERSDQLDVLSW-FGG 519 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 R + D I R + Y + +D+ + + G + DL+ Sbjct: 520 --RASAEIRLPDAISR---RLLCPFQYFGISDAVDLDGLTW--------QRGGYRIDDLD 566 Query: 229 RELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDT 284 R + ++ E + V + F +V HA+ + + ++ + Sbjct: 567 RLYTGNDVRAKLVFEKVAETVLDSQDVRGLAFCCSVAHAEFMARFFDENGIPSIALSASS 626 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ER+ + + + ++ V + G D P VD + LRPTES++++ Q +GRGLRL Sbjct: 627 TNDERNSAQQRLRERSVNFIFVVDLYNEGIDIPEVDTVLFLRPTESLTVFLQQLGRGLRL 686 Query: 345 APGKTDCLILDYAG 358 P K +LD+ G Sbjct: 687 HPEKECLTVLDFIG 700 >UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CWI1_9BACE Length = 1039 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 174/391 (44%), Gaps = 56/391 (14%) Query: 3 FTLRPYQQEAVDA------TLNHFRRHKTPAVIVLPTGAGKSLVIA--------ELARLA 48 ++L P+Q++ +D +FR ++V TG GK+++ A + + Sbjct: 308 YSLLPHQKQILDKLKVEREECGNFRN-----LVVAATGTGKTVISAFDYQSFCQQQTGVG 362 Query: 49 R-GRVLVLAHVKELVAQNHAKYQALGLEADI----FAAGLKRKESHGKVVFGSVQSVARN 103 R R+L AH +E++ Q+ Y+++ +A+ + E+ +F S+ Sbjct: 363 RTSRILFTAHREEILRQSLHTYRSVLQDANFGTLWVGNEAPQTEADYAHLFVSISMFNSR 422 Query: 104 LDAFQGE-----FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGK 158 +A + + +++DE H D Y+++ +H +P L L+GLTATP R+ Sbjct: 423 FEALFSQLPADYYDYIVIDEAHHSQADS---YRKLFSHF---HPQL-LIGLTATPERM-D 474 Query: 159 GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 G + + G + E+ L ++ G LTP + L V + Sbjct: 475 GKDLRPDFGGRISA-----------EIRLPQALQAGLLTPFQYL--CVTDDTDLTDDSLW 521 Query: 219 NGLFSEAD-LNRELKKQQRITPHIISQIMEFAATRKG--VMIFAATVEHAKEIVGLLPAE 275 NG D L +L +R HI+ + + A + F +HA + L Sbjct: 522 NGQRYVIDRLADKLCVPER-AQHIVDALHRYLADEYTCRALCFCVNKKHADFMALQLQKY 580 Query: 276 --DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSL 333 +A +T DTP +R L E+ + YL V + G D P VD + LRPT+S+++ Sbjct: 581 GFNAKSLTSDTPQPQRKQLAEDLRNGLVHYLCVVDIFNEGVDIPEVDTVLFLRPTDSLTI 640 Query: 334 YQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 + Q +GRGLRL+PGKT+ +LD+ H Y Sbjct: 641 FLQQLGRGLRLSPGKTELTVLDFVAQAHKKY 671 >UniRef50_C2KJC2 Helicase n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KJC2_LEUMC Length = 515 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 112/468 (23%), Positives = 187/468 (39%), Gaps = 82/468 (17%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAH 57 M F L YQ + + ++V G+GK+ +++E+ARL RV V+AH Sbjct: 1 MPFQLYDYQNKLLSEARQSLANGSKSVMVVSAAGSGKTAMMSEMARLTTSHHKRVWVMAH 60 Query: 58 VKELVAQ--NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLI 115 KEL+ Q + K+ + E V +V ++ ++ L+I Sbjct: 61 RKELINQIRDSFKFNEIDFEY---------------AVIKTVGTMVHRMNNMAPP-DLII 104 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDE 174 DE H + Y+++ P + +G TATP R+ G G+ Sbjct: 105 FDEAHH---SIANTYRKVRDKF----PDVPTIGFTATPCRMSGVGFT------------- 144 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQY-DFSRLQAQSNGLFSEADLNRELKK 233 ++ D + + ++I+H L P D V + D ++++ S G + AD E Sbjct: 145 -DMYDDIVTGPSIPWLIEHDKLAP---FDYYVPTFIDINKIKFNSAGN-ATADSMHEAVG 199 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 + T + I + A + + + +V+ + IV L +A I TP RD Sbjct: 200 DELATLNSIYDQWKLLAEHEKTITYMYSVDSSHAIVDLFNQNGVPSAHIDSKTPKVIRDK 259 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 +++F+ + + L N + G + P + + RPT+S+ Y Q R +R P K Sbjct: 260 AMQDFRDGKLQMLSNYELYGEGVNIPDATTVIMARPTKSLVFYIQAGMRSMRYQPNKK-A 318 Query: 352 LILDYAGNPHDLYAPEV---------GTPKGKSDN--VPVQVFCPACGFANTFWGKTTAD 400 LILD+ GN + P+ GT K KS + PV C C FA TF+ D Sbjct: 319 LILDFVGNVNRFGLPDYDHDWEEYFKGTKKKKSGDFEAPVST-CDNC-FA-TFYSNEWVD 375 Query: 401 GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRC 448 H G ++DG ++K CP C + R Sbjct: 376 ----VHSGT-------NEDGKET------KYKTCPYCGEVTETVVERA 406 >UniRef50_A0RY27 Superfamily II helicase n=1 Tax=Cenarchaeum symbiosum RepID=A0RY27_CENSY Length = 614 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 74/374 (19%) Query: 27 AVIVLPTGAGKSLVIAE--LARLARG----RVLVLAHVKELVAQ----------NHAKYQ 70 A++ LPTG+GK+ ++ E +A L + +L +A +E+ Q + K Sbjct: 216 AIVSLPTGSGKTRMVVEAAVALLNQSGPDKNILWIADTQEVCEQAVVCFKQIWERYGKGG 275 Query: 71 ALGLEADIFAAGLKRKESHGKVVFGSVQSVA---RNLDAFQGEFSLLIVDECHRIGDDEE 127 L + L + HG ++ S+Q ++ LD+ + S +I+DE H Sbjct: 276 ILNIYRTWGDNDLPVYDEHG-IIVASIQKLSASSEKLDSLRENLSTIIIDEAHH---SIA 331 Query: 128 SQYQQILTHL--------TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD------ 173 Y ++L HL T+ + + L+GL+ATP R G + H M R + Sbjct: 332 PSYVEVLEHLGLSRSGSETENDSRIPLIGLSATPERKEPGGTRKLH--NMYRNNTVYPCQ 389 Query: 174 ------EKALFRDCIYELPLRYMIKH----GYLTPPE---------RLDMPVVQYDFSRL 214 E+ + D ++ + YM K YL E +LDM Y Sbjct: 390 KFSPSAERGVSFDDNWQ-NMDYMRKKLTQWKYLADAEFVSIGVGDVKLDMENSAYLKRGN 448 Query: 215 QAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA 274 G+ A+ NR +K +++ A K ++ F V + + +L Sbjct: 449 DKWMRGVAIMAERNRLIK----------DYVLKEARNNKKILYFGPNVSQSNAMARILEE 498 Query: 275 ED--AALITGDTPGAERDVLIENFKA---QRFRYLVNVAVLTTGFDAPHVDLIAILRPTE 329 ED + IT +T + R + ++ F + + + N VL+TGFD+P +D++ I RPT Sbjct: 499 EDVGSVCITSETRHSVRKMFVDIFNGPDDSKIQVMCNYNVLSTGFDSPKIDMVVIARPTT 558 Query: 330 SVSLYQQIVGRGLR 343 SV YQQ+VGRGLR Sbjct: 559 SVVAYQQMVGRGLR 572 >UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IPV6_GEOTN Length = 815 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 40/367 (10%) Query: 4 TLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 T+RP Q EA++ + A++V+ TG GK+ + A AR RVL +AH +E+ Sbjct: 221 TIRPRFAQVEALERLEAAYEEGYDKAMVVMATGLGKTYLAAFFARRF-SRVLFIAHREEI 279 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSV--QSVARNLDAFQGE-FSLLIVDE 118 + Q ++ + + +K+ + +VF S+ S+ ++L +F+ + F L++VDE Sbjct: 280 LRQAKQSFECVIPDRTAGIYDGHQKDGNADMVFASIFTLSMKKHLFSFRPDSFDLIVVDE 339 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H Y+++L + P LLG+TATP R D K ++ Sbjct: 340 FHHAA---ARSYERVLRYF---RPEF-LLGITATP----------------DRNDNKDVY 376 Query: 179 RDC----IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 C Y + ++ G+L P + D+S+++ + E L +L+++ Sbjct: 377 AICDGNVAYRIDFIEAVQRGWLAPFHYYGV-YDDTDYSQIKWLGSRYDEEELLQVQLREE 435 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVL 292 + +I+ ++ TR ++F +++ A + ++ R Sbjct: 436 --MAENILRAWEQYKKTR--TLVFCSSIRQADFLCEYFRRRGYRTVSLHSKQTTIPRQQA 491 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 I + + V + G D P VD + +RPTES++++ Q VGRGLRL GK C+ Sbjct: 492 IAMLEQCELDAIFTVDLFNEGVDIPSVDTLLFVRPTESLTVFTQQVGRGLRLYEGKDYCV 551 Query: 353 ILDYAGN 359 I+D GN Sbjct: 552 IIDLIGN 558 >UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=A1SRA3_PSYIN Length = 860 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 110/477 (23%), Positives = 181/477 (37%), Gaps = 114/477 (23%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------------------RL 47 R YQ+ A++ L K ++ L TG GK+ + + A Sbjct: 163 RYYQENAINQALEAIALGKDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSNAK 222 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEADI--------FAAGLKRKESHGKVVFGSVQS 99 R R+L LA L Q + A G +A + A G+ + S +F ++ + Sbjct: 223 KRPRILFLADRNILTKQAFNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTLMT 282 Query: 100 VAR-----------------------------NLDAFQGEF-SLLIVDECHRIGDDEESQ 129 + N + +F +I+DECHR G ++ES Sbjct: 283 DSASNPTNDSDEEELPEDEDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDESS 342 Query: 130 YQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRY 189 ++ IL + P ++L GLTATP R Y++ F + +Y L+ Sbjct: 343 WRDILNYFA---PAVQL-GLTATPKRTDNVDSYKY-------------FGEPVYSYTLKE 385 Query: 190 MIKHGYLTPPERLDMPVV----QYDFS-------RLQAQSNGLFSEADLNRELKKQQRIT 238 I G+LTP + P+V +Y ++ + + ++ ++ E D NR + QR Sbjct: 386 GINDGFLTPFKVY--PIVGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQREQ 443 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL------------PAEDAALITGDTPG 286 + M+ ++F T EHA + + P + D Sbjct: 444 KRV-HYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYAVQKGWTTNPTYCVRITANDGAA 502 Query: 287 AERDV--LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 E D+ +N K L L+TG DA +V I ++RP ++ ++QI+GRG RL Sbjct: 503 GENDLRTFCDNEKTIP-TILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTRL 561 Query: 345 APGKTDCLILDYAGNPHDLYAPEVG----TPKGKSDNVPVQV--------FCPACGF 389 GK+ + D+ H+ PE PK K D P + C CGF Sbjct: 562 YDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDICNVSPCICICEVCGF 618 >UniRef50_B3T0J4 Putative DEAD/DEAH box helicase n=1 Tax=uncultured marine microorganism HF4000_005I08 RepID=B3T0J4_9ZZZZ Length = 607 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 100/370 (27%), Positives = 157/370 (42%), Gaps = 36/370 (9%) Query: 5 LRPYQQEAVD---ATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARGRVLVLAHVK 59 LR +QQ+ +D + ++R ++ PTGAGK+++ ++ A +V+VL H Sbjct: 3 LRNWQQKIIDDFPSITASYKRF----ILKAPTGAGKTVLARQIIDQFYAGKKVIVLCHRL 58 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN-LDAFQGEFSLLIVDE 118 L+ Q + A K + S AR LD + L+IVDE Sbjct: 59 VLLDQLQSVLSE-NRRVRTLAVSDKGTAFDNYDILLSTSMRAREVLDDAIPKADLIIVDE 117 Query: 119 CHRIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 HR+ + Y++I+ K P +GLTA+P R G R Sbjct: 118 AHRVSPNGRG-YRRIIEKFRKEGKPSAHFMGLTASPER----------RTGDQRDQLNLA 166 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F I ++ +I G L P+ V D + S+G + + L E+ K + Sbjct: 167 FDAIIDCANIQELISEGILVQPKYRPYFVHDLDLDSINV-SSGEYPVSRLTDEIIKSSML 225 Query: 238 --TPHIISQIMEFAATRKGVMIFAATVEHAK------EIVGLLPAEDAALITGDTPGAER 289 H + ++R F V A E +G+ +A +IT T ER Sbjct: 226 DYATHAYMEERSTISSRPTSAWFCPDVRVAGITRDRLESIGI----NAEIITAGTSIKER 281 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 ++ LV+V VLT G+D P ++I +RPT S L+ Q VGRGLR APGK Sbjct: 282 RRILSGHHTGDIEALVSVGVLTEGWDNPACNIIVHMRPTLSKVLWGQSVGRGLRSAPGKE 341 Query: 350 DCLILDYAGN 359 +C+++D + N Sbjct: 342 ECIVIDVSSN 351 >UniRef50_C6VL05 Helicase-like protein:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like protein n=6 Tax=Lactobacillus RepID=C6VL05_LACPJ Length = 419 Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 173/376 (46%), Gaps = 62/376 (16%) Query: 41 IAELARLARG---RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSV 97 +A++AR A RVL + + +E++ Q +++ + + G+ V Sbjct: 1 MADIARRATAKGNRVLFIVNRREILEQAENTFKSDDVNMSLCKMGM-------------V 47 Query: 98 QSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL- 156 Q++ R++D + +++++DE H YQ+I+ L+LL TATP+R+ Sbjct: 48 QTITRHIDELT-KPAIIMIDEAHHA---LSKSYQRIIQAFPDA---LKLL-FTATPWRMD 99 Query: 157 GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA 216 GKG + D I P+ +I G+L P + + D ++L+ Sbjct: 100 GKGL--------------NVIADDLIMGKPISELINQGFLAPVDYY--APSEIDVTQLKT 143 Query: 217 QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE- 275 + NG F E +++ +K +I + + ++ A ++ + +A V A+ + Sbjct: 144 KRNGEFDEKSIDQAVK--PKIYGNAVRHYLKLAPGKQAIA-YAYNVASAERLAEAFNQAG 200 Query: 276 -DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 A ++G T A R ++ +++A + + + N + T G D P+VD + +LRPT+S+SLY Sbjct: 201 ITARAVSGKTDRAARKRIVADYRAGKIQVVTNAELFTEGLDLPNVDCVIMLRPTQSLSLY 260 Query: 335 QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV-------GTPK-GKSDN-VPVQ--VF 383 Q R + GK +I+D+ N P + G K KS N P++ Sbjct: 261 LQFAMRSMNPREGKR-AIIIDHVNNVERFGLPTIDRQWILSGRDKHSKSSNGSPIKSVSV 319 Query: 384 CPACGFANTFW--GKT 397 CP C FA TF+ GKT Sbjct: 320 CPEC-FA-TFYRKGKT 333 >UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IP85_9CHRO Length = 1060 Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 111/388 (28%), Positives = 177/388 (45%), Gaps = 55/388 (14%) Query: 3 FTLRPY--QQEAVDATLN----HFRRHKTPAVIVLPTGAGKSLVIA-ELARL-------- 47 F LRPY Q+E +D H R H ++V TG GK+++ A ++ARL Sbjct: 316 FDLRPYAYQREMLDQLAAERSLHHRWHN---LVVAATGTGKTVLAAFDVARLHADFPERF 372 Query: 48 ---ARGRVLVLAHVKELVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVA 101 +L++AH KE++ Q A ++ + + +++ G + S + VF SVQS++ Sbjct: 373 PSPDPPPLLLIAHRKEILQQALATFRQVLRDPSFGELWVDG--ERPSQWRHVFASVQSLS 430 Query: 102 RNLDAF--QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + A F ++IVDE H + Y + L H+T P L LLGLTATP R Sbjct: 431 QQDTAEIPADRFDVVIVDEFHHAA---AASYLRWLDHIT---PKL-LLGLTATPERADG- 482 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN 219 + H+ G EL L + G L+P + D S L+ + Sbjct: 483 -LDILHWFGG----------RIAAELRLWSALDQGLLSPFHYFAV-ADATDLSALEWRRG 530 Query: 220 GLFSEADLNRELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAE-- 275 G + A+L+ R I+S++ + A +R + F +VEHA + A Sbjct: 531 G-YVPAELSTLYTGDHRRVDLILSELDKKLADPSRMRALGFCVSVEHAHFMAERFRARGL 589 Query: 276 DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 +A + +P R + + + L V + G D P +D + +LRPTES ++ Sbjct: 590 NAEALDASSPADVRRDALRRLQNGELQILFAVDLFNEGLDIPAIDTVLLLRPTESAVVFL 649 Query: 336 QIVGRGLRLAP--GKTDCLILDYAGNPH 361 Q +GRGLRL+P GK+ +LD+ G H Sbjct: 650 QQLGRGLRLSPETGKSCLTVLDFIGQQH 677 >UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO Length = 970 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 96/382 (25%), Positives = 170/382 (44%), Gaps = 43/382 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQN-- 65 Q+ A+ N R+ A+I+ TG GK+ + A ++ R L + H ++++ Sbjct: 232 QKAALGEIANLRRKDINKALIISATGTGKTYLGAFDVKNFKPRRFLFVVHREQILEDALE 291 Query: 66 --HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECH 120 H E IF+ G + K VF + Q++++ NL F + EF ++ DE H Sbjct: 292 SFHKVIGGTKKEYGIFS-GNDQSGIKAKYVFATSQTLSKDINLKQFAKDEFDYVMFDEAH 350 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFR 179 +G SQY +I + P LG+TATP R I++ F YH Sbjct: 351 HLG---ASQYLKIFNYFE---PKF-CLGMTATPERTDDFNIFKLFDYH------------ 391 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 YE+ L+ +++ L P + + Y+ + + S+ +L +R+ Sbjct: 392 -IAYEIRLQDALENKMLAPFQYYGVEDYVYE--------DHVISDTSSLSDLVADERV-D 441 Query: 240 HIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIEN 295 +II Q + + + +IF + + A+E+ L + A ++G RD ++E Sbjct: 442 YIIEQTKYYGYSGDILHGLIFCSRNKEAEELAESLRQKGIQAKSLSGKDDVETRDEVVEE 501 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 + + Y+V V + G D P ++ I +LR T+S ++ Q +GRGLR PGK ++D Sbjct: 502 LEKGKINYIVTVDIFNEGIDIPCINQIVLLRSTKSSIVFVQQLGRGLRKFPGKDYLTVID 561 Query: 356 YAGNPHDLYAPEVGTPKGKSDN 377 + G + Y + KS N Sbjct: 562 FIGAYDNNYMIPMALSGDKSHN 583 >UniRef50_C3WDK9 HKD family nuclease/DNA/RNA helicase (Fragment) n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WDK9_FUSMR Length = 371 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 116/254 (45%), Gaps = 26/254 (10%) Query: 108 QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 + F +IVDE H S + L L P LLGLTATP R G IY+ + Sbjct: 11 KDSFDYIIVDEFHH------SSSKSYLKVLNYFQPQF-LLGLTATPDRADNGDIYKLCDY 63 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 + YE R I +G+L P E + D+S + +S G + L Sbjct: 64 NIA------------YECDFRVEINNGWLVPFEYYGI-YDDTDYSLIPWRS-GKYDLEAL 109 Query: 228 NRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTP 285 L ++R+ + + ME +K + F A+V+H + + + + +I G+TP Sbjct: 110 ENALVIEKRVDL-VFKKYME--HRKKSTVGFCASVKHCEVMNQYFRKQGVKSEIIIGETP 166 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ++R +I FK + + V + G D P +D + LRPT S +++ Q +GRGLR Sbjct: 167 ISKRQEIIGKFKEREVEVIFTVDIFNEGVDIPCIDTLLFLRPTLSYTIFIQQLGRGLRTF 226 Query: 346 PGKTDCLILDYAGN 359 GK +LD+ GN Sbjct: 227 EGKDSVRVLDFVGN 240 >UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum RepID=A3EQ89_9BACT Length = 1054 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 106/386 (27%), Positives = 173/386 (44%), Gaps = 54/386 (13%) Query: 3 FTLRPY--QQEAVD------ATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGR-- 51 F +RPY QQE +D FR ++V TG GK+++ A + R R Sbjct: 315 FDIRPYPFQQEILDRLEVEREVNGSFRN-----LVVSATGTGKTVIAAFDFRRFREKRPD 369 Query: 52 --VLVLAHVKELVAQNHAKYQALGLE----ADIFAAGLKRKESHGKVVFGSVQSVAR-NL 104 L +AH KE++ Q+ ++ + LE +++ AG + H + VF S+QS+ R L Sbjct: 370 ATFLFVAHRKEILEQSLKHFRHI-LEDRNFGELWVAG--SRPVHVRHVFASIQSLDRAEL 426 Query: 105 DAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 D E F +++DE H Y+++L L P + LLGLTATP R Sbjct: 427 DRISPERFDYVVIDEIHH---GMAPTYRRLLETL---KPRI-LLGLTATPER-------- 471 Query: 164 FHYHGMVRGDEKALFRD-CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF 222 G+ D + F D E+ L I L P + + D+ L+ + G + Sbjct: 472 --SDGL---DVRRYFNDRTAAEIRLGEAIDRNLLCPFHYFGI-TDEVDYRNLRWE-RGQY 524 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLL--PAEDAA 278 +L + L ++ + E+ GV + F V HA+E+ L + Sbjct: 525 DRRELEKVLTGNDLRNRSVLRALREYCPDLSGVRGIGFCVGVRHAEEMSDLFNRAGIPSI 584 Query: 279 LITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 ++ D+ RD + + ++ V + G D P VD + LRPTES++++ Q + Sbjct: 585 ALSADSSREVRDAVSARISSGELTFVFVVDLYNEGIDIPAVDTVLFLRPTESLTIFLQQL 644 Query: 339 GRGLRLAPGKTDCLILDYAGNPHDLY 364 GRGLR GKT +LD+ G+ H+ + Sbjct: 645 GRGLRQRWGKTHLTVLDFVGHMHEKF 670 >UniRef50_B1BM47 Type III restriction enzyme, res subunit family n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BM47_CLOPE Length = 740 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/381 (24%), Positives = 167/381 (43%), Gaps = 56/381 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL-----VIAELARLARGRVLVLAHV 58 TL +Q++AV+ R +++VLPTG GK+ ++ E+ + +VL +AH Sbjct: 23 TLYEHQKDAVEKLNKLNERDSFSSLLVLPTGGGKTFTGVYWLLKEVVN-NKKKVLWIAHR 81 Query: 59 KELVAQNHAKYQALGLEADIFAA--------------GLKRKESHGKVVFGSVQSVARNL 104 L+ Q +Q ++ + KES ++ S S RNL Sbjct: 82 HLLLEQAANTFQKTAYSDLLYNISSFNYRIVSGKHDQAINIKESDDILII-SKDSAIRNL 140 Query: 105 DAF-----QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 D+ + E L++DE H Y++++ ++ ++LLGLTATPFR Sbjct: 141 DSIGKWLSKEEEVYLVIDEAHHAT---AKSYRKLIDYVYSKVEKVKLLGLTATPFRTAD- 196 Query: 160 WIYQFHYHGMVRGDEKALFRD-CIYELPLRYMIKHGYLTPP--ERLDMPVVQYDFSRLQA 216 + G++ +F D ++++ L+ +IK L+ P E + + + L+A Sbjct: 197 -----NEQGLL----AKIFTDGIVFKIDLKDLIKKEILSRPLFEACETEIKVGNNMGLKA 247 Query: 217 QSNGLFSEA---DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL-- 271 N + + D+ ++ + I+++ + +IFA HA + GL Sbjct: 248 IKNIEYLDNLPDDIANDIANNKERNKLIVNRYLANLDKYGQTIIFALNRLHAISLRGLFE 307 Query: 272 ---LPA------EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLI 322 +PA A I D E ++ I+N++ + + L+NV +LT G D P + Sbjct: 308 KAGIPAGVIVSGTKAEFIGIDISDKENELQIKNYREGKIKVLINVNILTEGVDLPQTKTV 367 Query: 323 AILRPTESVSLYQQIVGRGLR 343 + RPT S L Q+VGR LR Sbjct: 368 FLTRPTVSTILMTQMVGRALR 388 >UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria RepID=B9MGJ1_DIAST Length = 827 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 113/450 (25%), Positives = 187/450 (41%), Gaps = 91/450 (20%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RL----ARGRVLVLAHV 58 T R YQ AV+ + + ++V+ TG GK+ ++ RL A+ R+L LA Sbjct: 164 TPRYYQLNAVNRAVEAIAAGQDRVLLVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADR 223 Query: 59 KELVAQNHAK----YQALGLEADIFAAGLKRKESHGKVVFGSV------------QSVAR 102 L+ Q ++ + A G++R ++ G V V +S Sbjct: 224 NILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGAVSVEDVDLAVNKTTKLVDKSYEI 283 Query: 103 NLDAFQGE-----------------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 L +Q F L++VDECHR E+S ++ ILT+ Sbjct: 284 YLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECHRGSAAEDSAWRDILTYFAGATQ--- 340 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE--RLD 203 +GLTATP + Y G + +Y L+ I+ GYL P + R+D Sbjct: 341 -IGLTATPKETKD--VSNTDYFG-----------EPVYTYSLKQGIEDGYLAPYKVIRVD 386 Query: 204 M--------PVVQYDFSRLQAQSNGLFSEADLNRELKKQQR--ITPHIISQIMEFAATRK 253 + P A + +++ AD+NR+L +QR + I++ ++ Sbjct: 387 LDKDTFGWRPTAGMTDKHGHAIEDRIYTGADMNRKLVLEQRDAVVAAKITEYLKATDRYA 446 Query: 254 GVMIFAATVEHAKEIVGLLPAEDAAL----------ITGDTPGAERDVLIENFKAQRFRY 303 ++F ++HA + L +A L ITGD E + ++NF Y Sbjct: 447 KTIVFCEDIDHAARMRQALSNANADLCATQPKYVVQITGDN--IEGKLELDNFIDPEKTY 504 Query: 304 LV---NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAG 358 V +++TG DA LI + + +S++L++QI+GRG RL GKT ILD+ Sbjct: 505 PVIATTSKLMSTGVDAQTCKLIVLDQTIKSMTLFKQIIGRGTRLREDLGKTWFTILDFK- 563 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCPACG 388 +L+A + D PVQ++ P G Sbjct: 564 RATELFADK------DFDGEPVQIYEPGSG 587 >UniRef50_Q1CPI4 Phage DNA/RNA helicase n=21 Tax=root RepID=Q1CPI4_STRPF Length = 411 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 100/434 (23%), Positives = 180/434 (41%), Gaps = 106/434 (24%) Query: 39 LVIAELARLAR---GRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFG 95 +V+A +A+ A RVL +H KE+ Q + G+ +++ + G Sbjct: 1 MVMAHIAKSATDKGNRVLFFSHRKEINEQVEKTFAVNGVNSNL-------------LTIG 47 Query: 96 SVQSVARNLDA-FQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPF 154 VQS+ R LD+ FQ E ++++DE H + Y +I+ + + +L T TP Sbjct: 48 GVQSLVRKLDSLFQPE--VILIDEAHH---SKAKSYLKIIDYF----KNAYVLMFTGTPV 98 Query: 155 RL-GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT-----PPERLDMPVVQ 208 RL G G+ D+ A D + ++++ +HG + P +D V++ Sbjct: 99 RLNGDGF------------DDIA--DDLVVGKSVKWLQEHGNIANFKYYAPSMIDNSVLK 144 Query: 209 YDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEI 268 + G F++ +++ +K I +I + A ++ + ++ +VE + + Sbjct: 145 --------KRGGEFTKDSVDQSMK--SVIYGDVIKHYEKLAKGKQAI-VYTHSVEASHLV 193 Query: 269 VGLL--PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILR 326 + ++G TP ER+ + F+ + +VN + T G D P+VD+ +LR Sbjct: 194 SDTFNQAGYQSQAVSGKTPKNEREEAMRAFRDGDLKIMVNCELFTEGIDLPNVDVCIMLR 253 Query: 327 PTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVG--------TPKGKSDNV 378 PT+S+SLY Q R L GKT +I+D+ GN P + T + +S + Sbjct: 254 PTQSLSLYLQFAMRPLNPRDGKT-AIIIDHVGNVERFGLPNMDREWRLDGETKQKQSAKI 312 Query: 379 --PVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQ 436 P C C +A T+W T + CP+ Sbjct: 313 GEPTTRVCDNC-YA-TYWSDT----------------------------------RICPE 336 Query: 437 CNAENDIAARRCRE 450 C EN++ R E Sbjct: 337 CGHENELTKREIEE 350 >UniRef50_C4L054 Type III restriction protein res subunit n=70 Tax=Bacilli RepID=C4L054_EXISA Length = 959 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 166/366 (45%), Gaps = 49/366 (13%) Query: 27 AVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKR 85 A++V TG GK+ + A ++ R R+L + H ++++ + + + + +I G+ Sbjct: 245 ALVVSATGTGKTYLAAFDVRRYEPKRMLFVVHREQILKKAINDFHKV-IGGNIEDYGILS 303 Query: 86 KESH---GKVVFGSVQSVARNLDAFQ---GEFSLLIVDECHRIGDDEESQYQQILTHLTK 139 S K VF ++Q+++++ +Q F +++DE HR G + YQ++L + T Sbjct: 304 GTSRVIDSKYVFATIQTISKDETLYQFAQETFDYILIDESHRAG---ANTYQKLLEYFT- 359 Query: 140 VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR----DCIYELPLRYMIKHGY 195 P LLG+TATP R D LFR + YE+ L+ ++ Sbjct: 360 --PKF-LLGMTATP----------------ERSDGYDLFRLFDYNIAYEIRLQEALEENM 400 Query: 196 LTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV 255 L P + ++ D G E ++ ++L +R+ II +I + + + + Sbjct: 401 LCPFHYFGVTDLEID---------GEQKEIEVFQKLVSTERV-ERIIEKIKYYGYSGEKL 450 Query: 256 --MIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLT 311 ++F ++ + A + L A +TGD A+R + N + Y++ V + Sbjct: 451 RGLMFCSSKKEAIYLSEQLNARGFKTCALTGDDTQAKRKQEVNNLEQGLLDYILTVDIFN 510 Query: 312 TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTP 371 G D P ++ + +LR TES ++ Q +GRGLR K ++D+ N + Y + Sbjct: 511 EGIDIPSINQVVMLRQTESSIIFIQQLGRGLRKHKSKRYVTVIDFIANYKNNYLIPIALS 570 Query: 372 KGKSDN 377 +S N Sbjct: 571 GDRSQN 576 >UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus acidophilus RepID=Q5FLU2_LACAC Length = 864 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 92/380 (24%), Positives = 170/380 (44%), Gaps = 39/380 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQN-H 66 Q+EA+ + + K A+I+ TG GK+ + A ++ + R L + H ++++ ++ + Sbjct: 227 QKEALGEIQSLRQNGKNKALIISATGTGKTYLGAFDVQKFKPKRFLYVVHREQILQKSRN 286 Query: 67 AKYQALGLEADIFA--AGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHR 121 + Y +G + +G R+ K +F +VQ++A+ NL F + F ++ DE H Sbjct: 287 SFYDVIGGAYSDYGIYSGNHREGLKSKYIFATVQTLAKDENLKKFARDAFDYILFDEAHH 346 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G +E L P LG+TATP R IY+ + + Sbjct: 347 LGSVQE------LKIFNYFQPQF-CLGMTATPERTDDFNIYKLFDYNIA----------- 388 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 YE+ L+ + L P + Y + L + A + L +R+ +I Sbjct: 389 -YEIRLQNALDQDMLCPFHYYGVEDYIY--------QDELINGATSLKRLVSDERVN-YI 438 Query: 242 ISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 + Q + + + + +IF + + A+ + L + A I+G ER+ ++ + Sbjct: 439 LQQTDYYGYSGRTLHGLIFCSRKKEAEILAEKLTEKGCPALAISGTDSIGEREKAVKKLE 498 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + +Y+V V V G D P ++ I +LR T+S ++ Q +GRGLR GK ++D+ Sbjct: 499 KGKVKYIVTVDVFNEGVDIPCINQIVLLRNTQSSIVFVQQLGRGLRKYKGKDYLTVIDFV 558 Query: 358 GNPHDLYAPEVGTPKGKSDN 377 GN + Y V KS N Sbjct: 559 GNYDNNYLIPVALTGDKSHN 578 >UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax=Veillonella parvula RepID=D1BPC6_VEIPT Length = 967 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 96/377 (25%), Positives = 161/377 (42%), Gaps = 59/377 (15%) Query: 10 QEAVDATLNHFRRHKTP-AVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+ A N R + +++ TG GK+ A R R R+L L H +++ Q A Sbjct: 213 QQQFIANFNELRANNAKRGLLISGTGTGKTYAAAFAMREMRPKRILFLVHREQIAKQAIA 272 Query: 68 KYQALGLEADIFAAGL---KRKESHGKVVFGSVQSVARNLDAFQ----GEFSLLIVDECH 120 ++ + + I GL K + VF ++Q + RN D + EF +I+DE H Sbjct: 273 SFERIYNDPSI-TFGLVSGNAKYYNATHVFSTMQMMGRN-DVMKQYAPKEFDCIIIDEVH 330 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 R G D YQ+I+ + P LLG+TA+P R +Y+ H + Sbjct: 331 RAGSD---SYQRIIEYF---EPQF-LLGMTASPERTDGYDLYELFDHNI----------- 372 Query: 181 CIYELPLRYMIKHGYLTPPERL---DMPV-VQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 IYE+ L+ ++ L P D+ V Q D S ++ + L ++ +++ Sbjct: 373 -IYEIRLQQALEEDLLCPFHYFGISDLWVDTQEDISDMEVSFSNLSTKERVDK------- 424 Query: 237 ITPHIISQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGAERDV 291 II +I F + +R ++F + AK + D +TG+ R++ Sbjct: 425 ----IIEKIRYFGHSGSRVKGLVFCSNRVEAKALSDAFNERDVYRTVCLTGEDSQETREI 480 Query: 292 LIENFKAQ---------RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 I + Y+ V + G D P ++ + +LR TES ++ Q +GRGL Sbjct: 481 AIARLTGTGDYQGRSDLQLDYIFTVDIFNEGVDIPEINQVIMLRQTESPIIFIQQLGRGL 540 Query: 343 RLAPGKTDCLILDYAGN 359 R K +ILD+ GN Sbjct: 541 RKFEDKEYVVILDFIGN 557 >UniRef50_C1GNS0 GPI inositol-deacylase n=2 Tax=Leotiomyceta RepID=C1GNS0_PARBA Length = 1440 Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 35/322 (10%) Query: 51 RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG--KVVFGSVQSVARN--LDA 106 + L++ H KELV Q AK+ L + + G ++ S++S+ ++ Sbjct: 29 KTLIIVHRKELVEQA-AKHCMLAYPEKTIEIEMGNCHATGTAEITIASIRSLLSKGRIEK 87 Query: 107 FQGE-FSLLIVDECHRIGDDEESQYQQILTH--LTKVNP-HLRLLGLTATPFRLGKGWIY 162 F E + L++VDE H I Y+++L + L +V+ L+G++AT R Sbjct: 88 FDPERYKLILVDEAHHI---VAPSYREVLEYFGLNEVSEGSPALVGVSATFSR------- 137 Query: 163 QFHYHGMVRG---DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN 219 + G+ G D +D I + R++ + T R D+ S + N Sbjct: 138 ---FDGLKLGTAIDHIVYHKDYIDMIGERWLADAVFTTVNSRADL-------SNVADAPN 187 Query: 220 GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDA 277 G F L+ + + + + A+ RK ++F ++H K + DA Sbjct: 188 GDFQTGQLSAAVNTAT-VNDITVRAWLSRASDRKSTLVFGVDIDHVKCLTDTFRRFGIDA 246 Query: 278 ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 IT T R +E F+ Q + LVN + T G D P++D + + RPT S +L Q+ Sbjct: 247 RYITSQTRKNLRTEELEAFRNQEYPVLVNCGLFTEGTDIPNIDCVLLARPTRSKNLLIQM 306 Query: 338 VGRGLRLAPGKTDCLILDYAGN 359 +GRGLRL PGK +C I+D + Sbjct: 307 IGRGLRLHPGKENCHIIDMVAS 328 >UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=Micromonospora RepID=C4RRI3_9ACTO Length = 1066 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 102/373 (27%), Positives = 175/373 (46%), Gaps = 47/373 (12%) Query: 7 PYQQEAVDATLNHFR----RHKTPAVIVLPTGAGKSLVIA-ELARLARG----RVLVLAH 57 PYQ E + A L+ R RH+ ++V+ TG GK++V A + RL R +L +AH Sbjct: 364 PYQAEIL-ADLDTERQVHGRHRN--LVVMATGTGKTVVAALDYRRLHRAGTVDSLLFVAH 420 Query: 58 VKELVAQNHAKY-QALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 ++++ Q+ + + QA+G + ++ G R+ + + VF S+QS+ R + G + ++ Sbjct: 421 QEQILRQSLSTFRQAIGDGSFGELLVGG--REPTGWRHVFASIQSLHRR-EIDPGAYDMV 477 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD- 173 IVDE H E Y ++L ++ P + LLGLTATP R G + ++ + G + Sbjct: 478 IVDEFHHA---EAPTYARLLG---RLRPRV-LLGLTATPDRADGGDVRRW-FDGRTAVEL 529 Query: 174 --EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 +AL R + P +Y H D S L+ + + +L Sbjct: 530 HLWEALERQLL--APFQYFGVHD-------------DVDLSHLRWKRGQGYDPGELGGVY 574 Query: 232 KKQQRITPHIISQIME-FAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 ++S + + R + F ++ HA+ + +A +T + Sbjct: 575 TGNDARARIVLSSVRDKVDVHRMRALGFCVSIGHAEFMADWFTRHGVPSAAVTSRADRSA 634 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 + L+ +F+A + R L V + G D P VD I +LRPTES +++ Q +GRGLRL K Sbjct: 635 QHGLLRDFRAGKLRVLFTVDLFNEGVDLPMVDTILMLRPTESATIFLQQLGRGLRLDDDK 694 Query: 349 TDCLILDYAGNPH 361 +LD+ G H Sbjct: 695 PCLTVLDFIGGQH 707 >UniRef50_C3MF99 Putative restriction endonuclease type I with R subunit / type III with Res subunit n=1 Tax=Rhizobium sp. NGR234 RepID=C3MF99_RHISN Length = 1140 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 126/440 (28%), Positives = 183/440 (41%), Gaps = 109/440 (24%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARG----RVLVLAHVK 59 +RPYQ++A+ A N + ++ + TG GK+ IA + RL + R+L L K Sbjct: 430 MRPYQEDAIAAIENAVVAGQRDILVSMATGTGKTRTSIALMYRLLKHKRFRRILFLVDRK 489 Query: 60 ELVAQNHAKYQALGLE-----ADIF-AAGLKRK--ESHGKVVFGSVQS-VARNLD----- 105 L Q + +E A I+ AGL++K E +V +VQS +AR L+ Sbjct: 490 ALGKQTSDALETTEIEGMLNFAQIYKVAGLEKKVPEDEDQVQVATVQSLIARILNEPDPA 549 Query: 106 --AFQGEFSLLIVDECHR------------IG----DDEESQYQQILTHLTKVNPHLRLL 147 G F +IVDE HR +G DD +S Y+QIL + V + Sbjct: 550 KRPTPGTFDCIIVDEAHRGYTLDAELRESDVGFRNLDDYQSAYRQILDYFDAVK-----V 604 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PPERL-- 202 LTATP H + +F ++ R + GYL PP+R+ Sbjct: 605 ALTATP---------ALHT--------REIFGHPVFHYGYRQAVVEGYLNDHLPPKRITT 647 Query: 203 ------------------DMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ--QRITPHII 242 D Q D L + + + AD N+ + + R+ I Sbjct: 648 ALSEAGIHFEGGEEVEIIDRTTGQIDLFELPDEVSLDYDVADFNKRVYSEAFNRMVCRAI 707 Query: 243 SQIMEFAATRKG-VMIFAATVEHAKEIVGLLPAE-------DAA------LITGDTPGAE 288 + E ++ G +IFAA HA ++V LL E DA ITG+ A Sbjct: 708 A--TEIPPSKPGKTLIFAARDAHADDLVRLLVEELQEEYGNDAVPHGMVMKITGNVDKA- 764 Query: 289 RDVLIENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP- 346 D LI FK +Y+V V +LTTG D P + + +R +S LY Q++GR RL P Sbjct: 765 -DDLILKFKNDPHPKYVVTVDLLTTGIDVPTICNLVFVRRVKSRILYDQMIGRATRLCPE 823 Query: 347 -GKTDCLILDYAGNPHDLYA 365 GK I D DLYA Sbjct: 824 IGKEHFRIFDAV----DLYA 839 >UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NH67_ACHLI Length = 986 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 93/362 (25%), Positives = 159/362 (43%), Gaps = 37/362 (10%) Query: 10 QEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 QE LN+ R A+I+ TG GK+ + A ++ +L +VL + H +++ Sbjct: 240 QEMALEGLNNIRNSGGNKALIIAATGTGKTYLSAFDVFQLRPKKVLFVVHRGKILRDALR 299 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRIGD 124 ++ + E + +K+ +F SVQ++++ NL+ F F +I+DE HR Sbjct: 300 TFKTIMPEVSMGEFVGSKKDLESDYLFASVQTISKIDNLNLFDPSYFDYIIIDEAHRSAA 359 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 D YQ+I ++ T P LLG+TATP R IY+ + + + E Sbjct: 360 D---SYQRITSYFT---PKF-LLGMTATPERTDSRNIYELYDNQIA------------VE 400 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD-LNRELKKQQRITPHIIS 243 + LR ++ + P + D Q+ L +E D L +L + R+ II Sbjct: 401 IRLRQALEKELVVPFHYFGIEDATTDI-----QNINLNTEIDKLAEKLNIKARVEL-IIE 454 Query: 244 QIMEF--AATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFKAQ 299 I ++ + + + + + HA+ + I TG T +R+ I + Sbjct: 455 NIKKYKHSGDKTKALGYCVNIAHAEYMANAFNERGLVSIALTGGTAELDREDTIRRLEDP 514 Query: 300 R--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 Y+ V + G D P V+LI +LRPT S ++ Q +GRGLR K +LD+ Sbjct: 515 NDPLSYIFTVEIFNEGIDIPSVNLILMLRPTNSSIIFTQQLGRGLRKYKDKEYLTVLDFI 574 Query: 358 GN 359 N Sbjct: 575 AN 576 >UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMU8_9BACT Length = 1055 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 99/380 (26%), Positives = 172/380 (45%), Gaps = 42/380 (11%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLAR-----GRVLV 54 F +RPY Q+E +D H + ++V TG GK+++ A R R L Sbjct: 316 FDIRPYPFQEEVLDRLEAEREVHGSFRNLVVSATGTGKTVIAAFDFRRFREQKPDATFLF 375 Query: 55 LAHVKELVAQNHAKYQALGLE----ADIFAAGLKRKESHGKVVFGSVQSVARNLDA--FQ 108 +AH +E++ Q+ +++ + LE +++ AG + HG+ VF S+QS+ R Sbjct: 376 VAHRQEILEQSLKQFRHI-LEDRNFGELWVAG--SRPVHGQHVFASIQSLDRAAVGRISP 432 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 +F +++DE H Y+++L L P + LLGLTATP R G + +++ Sbjct: 433 EQFDYVVIDEIHH---GMAPTYRRLLETL---KPRI-LLGLTATPER-SDGLDVRRYFND 484 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 + D + L I L P + D+ L+ + G + DL Sbjct: 485 RMAAD-----------IRLGEAIDRNLLCPFHYFGV-TDSVDYRNLRWE-RGQYDRRDLE 531 Query: 229 RELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLL--PAEDAALITGDT 284 L ++ + E+ V + F V HA+E+ L +A ++ D+ Sbjct: 532 HVLTGNDLRNRSVLRALREYCPDLSEVRGIGFCVGVRHAQEMSDLFNRAGIPSASLSADS 591 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 RD + + ++++ V + G D P VD + LRPTES++++ Q +GRGLR Sbjct: 592 SREVRDAVSAKISSGEWKFIFVVDLYNEGIDIPVVDTVLFLRPTESLTIFLQQLGRGLRQ 651 Query: 345 APGKTDCLILDYAGNPHDLY 364 GKT +LD+ G+ H+ + Sbjct: 652 RRGKTHLTVLDFVGHMHEKF 671 >UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax=Bacteria RepID=A1SY30_PSYIN Length = 1149 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 171/371 (46%), Gaps = 45/371 (12%) Query: 9 QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNH 66 Q EA+D +N R+ A+++ TG GK+ + A A+ L R+L + H + ++ Sbjct: 218 QVEALD-NINVLRQSGARKALLISATGTGKTYLSAFDAQALKPKRLLFVVHRLTIALKSL 276 Query: 67 AKYQ-ALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 +Q G + ++E +F +VQ++++ +LD F + F +I+DE HR Sbjct: 277 ETFQNVFGTGKTMGVYSGSKQELDKDFLFATVQTISKQNHLDQFNKDYFDYIIIDESHRS 336 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + Y++++ H P LLG+TATP R I+ H + Sbjct: 337 G---ANSYKRLIEHF---EPTF-LLGMTATPERTDGEDIFSLFDHNIA------------ 377 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L ++ G L+ + + D + ++ G F+ L +R+ +II Sbjct: 378 YEIRLNRAMEEGMLSNFHYYGVTDLIID--NVIQENMGDFAF------LSSHERV-DNII 428 Query: 243 SQIMEFAATRKGV---MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 F + G+ ++F + E AK++ + + ++G+ ER IE + Sbjct: 429 KHAC-FYGSDNGITRGLVFCSRNEEAKKLAEMFNQSGFRSLALSGENSEDERARAIERLE 487 Query: 298 ----AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 A++ Y+ V + G D P V+ I ++RPT+S ++ Q +GRGLR GK + Sbjct: 488 TDNLAEKLDYIFTVDIFNEGIDIPKVNQIIMIRPTDSAIVFVQQLGRGLRKVDGKDYLTV 547 Query: 354 LDYAGNPHDLY 364 +D+ GN ++ Y Sbjct: 548 IDFIGNYNNNY 558 >UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae RepID=A4WYD6_RHOS5 Length = 956 Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 41/343 (11%) Query: 27 AVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRK 86 ++VL TG GK+ + A +R +VL +AH +E++ Q + ++ + EA K Sbjct: 280 GLVVLATGLGKTWLAAFDSR-PFAQVLFVAHREEILTQAMSSFRRIRPEARFGRYDGTEK 338 Query: 87 ESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPH 143 + +++F S+Q++ R+ L F + F ++VDE H Y+ +L H T P Sbjct: 339 DDGAEILFASIQTLGRSNHLRRFAPDSFDYIVVDEFHHA---SAGSYRGLLDHFT---PR 392 Query: 144 LRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC----IYELPLRYMIKHGYLTPP 199 LLGLTATP R D L C +Y L I+ G L+P Sbjct: 393 F-LLGLTATP----------------DRSDGADLLALCGDNLVYHCDLFEGIEAGLLSPF 435 Query: 200 ERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMI-F 258 L +P + D++++ +SN F L L + R + + +F R G I F Sbjct: 436 RYLGVPD-EVDYAQIPWRSN-QFDPEALEAALATEARAR----NALDQFHRHRDGPAIGF 489 Query: 259 AATVEHAKEIVGLLPAEDA-ALITGDTPG-AERDVLIENFKAQRFRYLVNVAVLTTGFDA 316 ++ HA+ + A+ A+ PG A R ++ L V + G D Sbjct: 490 CCSLRHAEFMAAFFQAQGLRAVAVHSGPGSAPRATSLDRLGRGEIDILFAVDMFNEGVDV 549 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 P++ + +LRPTESV L+ Q +GRGLR GK ++DY GN Sbjct: 550 PNIGTVMMLRPTESVILWLQQLGRGLRRVEGKL-LRVIDYIGN 591 >UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CSN2_METMJ Length = 1062 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 56/384 (14%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIA-ELARLAR-----GRV 52 IF +RPY Q+E ++ H +IV TG GK+++ A + L + R+ Sbjct: 328 IFDIRPYYYQKEILERLKAERELHNNYKNLIVAATGTGKTVISAFDYKSLFQRPGEYPRL 387 Query: 53 LVLAHVKELVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSV-ARNLDAFQ 108 L +AH +E++ Q+ ++ + + D+ G + + + +F S+QS+ +RNL Sbjct: 388 LFVAHREEILKQSIQVFRGVLKDQNFGDLLVGG--SEPAQIEHLFTSIQSLNSRNLPEIT 445 Query: 109 GE--FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 + ++IVDE H YQ++L++ T P + LLGLTATP R I ++ Sbjct: 446 PPDYYDMVIVDEFHHAA---APSYQRLLSYYT---PGV-LLGLTATPERTDNLDILEY-- 496 Query: 167 HGMVRGDEKALFRDCIY-ELPLRYMIKHGYLTP------PERLDMPVVQYDFSRLQAQSN 219 F + I E+ L I L P + +D+ V + Sbjct: 497 -----------FNEKISAEIRLPEAINRKLLAPFHYFGVTDVVDLDTVPW--------KR 537 Query: 220 GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED- 276 G + A+++R Q+ II + ++ + + F +VEHA+ + A Sbjct: 538 GTYDPAEISRLYTGNQQRADLIIRAVQDYTTDLHEIIGLGFCVSVEHAEYMAAAFRAAGV 597 Query: 277 -AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 AA + + ER + + ++ ++ V + G D P V+ I LRPTES++++ Sbjct: 598 PAACLHAGSSREERSTIQKRLVDRKIHFIFVVDLYNEGVDIPEVNTILFLRPTESLTVFI 657 Query: 336 QIVGRGLRLAPGKTDCLILDYAGN 359 Q GRGLRL+ GK +LD+ GN Sbjct: 658 QQFGRGLRLSDGKECLTVLDFVGN 681 >UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14JJ7_FRAT1 Length = 913 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 163/394 (41%), Gaps = 61/394 (15%) Query: 24 KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKY------QALGLEA 76 K A+I+ TG GK+ + A ++A + R L + H + + + + LGL Sbjct: 208 KNKALIISATGTGKTFLSAFDIASIKPKRCLFVVHRTNIAIKAQETFAKVISDKTLGL-- 265 Query: 77 DIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQG-EFSLLIVDECHRIGDDEESQYQQI 133 + G K + + +F +VQ++ ++ L F+ EF +I+DE H E Y+++ Sbjct: 266 --YTGGNK---TSAEYLFATVQTLKNSKVLANFKSQEFEYIIIDEVHHA---EAESYKKV 317 Query: 134 LTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKH 193 L H T P LLG+TATP R I++ + + YE+ L ++ Sbjct: 318 LAHFT---PKF-LLGMTATPERSDAADIFKLFDYNIA------------YEIRLHQALEQ 361 Query: 194 GYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK--QQRITPHIISQI--MEFA 249 L P F + L SE L + K HII +I ++ Sbjct: 362 DLLCP------------FHYFAVEDLYLESEEILAKNFAKLVSDVRVEHIIEKINFYGYS 409 Query: 250 ATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNV 307 + ++F + V+ AKE+ + A ++ R I ++ +V V Sbjct: 410 GQSRAALMFVSNVDEAKELATKFSNKGIKAKALSSQDSEQIRQTTIAQLESGELEIIVTV 469 Query: 308 AVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPE 367 + G D P ++ I +LRPT+S +Y Q +GRGLR K +ILD+ N + + Sbjct: 470 DIFNEGVDIPCINQIILLRPTQSAIVYIQQLGRGLRKYQDKKFVVILDFIANYTNNFLIA 529 Query: 368 VGTPKGKS---DNVPVQVFCPACGFANTFWGKTT 398 V S D + V P N GK+T Sbjct: 530 VALSGDNSYDKDELKKFVVSP----NNYLAGKST 559 >UniRef50_A0M1L3 Helicase-like protein-possibly a type-III restriction enzyme n=17 Tax=Bacteroidetes RepID=A0M1L3_GRAFK Length = 520 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 83/370 (22%), Positives = 162/370 (43%), Gaps = 44/370 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIV--LPTGAGKSLVIAELAR----LARGRVLVLAHV 58 L YQQ+ +D H ++ LPTG GK+++ +++ R +VL+L H Sbjct: 33 LYDYQQKDIDKIFGVIEEHPENYNLLYQLPTGGGKTVIFSQMTREYIQRTNKKVLILTHR 92 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKR--KESHGKVVFGSVQSVARNLDAFQGEFS---L 113 EL Q G+ I + +K + V+++ L+ + E L Sbjct: 93 IELCKQTSKMLSGFGVRNKIINSKVKELPDQDDYMCFVAMVETLNNRLNDEKLEIQDIGL 152 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +I+DE H + ++++ K +LG+TATP + +Y ++ GD Sbjct: 153 VIIDEAHY------NSFRKLFKFFEKC----FILGVTATPLSSNIKLPMKDNYRELIVGD 202 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 + +I+ G+L ++++ + L+ NG ++ + EL Sbjct: 203 ------------SISSLIEKGFLA---QVNIYSYNVGLTNLKVGMNGDYT-VKSSEELYS 246 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL----ITGDTPGAER 289 + +++ E + +K +IF + + E+ ++A L + T +R Sbjct: 247 NYSMQEKLLTAYYERSKGKK-TLIFNNGINTSVEV--YYTFKNAGLPIRHLDNTTSKQDR 303 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 +++ FK + +V++LTTGFD P V+ I + R T+S++LY Q++GRG R+ K Sbjct: 304 KDILKWFKHTPDAIVTSVSILTTGFDEPTVETIILNRATKSLTLYFQMIGRGSRVLKNKD 363 Query: 350 DCLILDYAGN 359 + ++D N Sbjct: 364 EFNVIDLGNN 373 >UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bacteria RepID=A7FVD5_CLOB1 Length = 968 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 158/353 (44%), Gaps = 42/353 (11%) Query: 21 RRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIF 79 + + A+++ TG GK+ + A ++ ++L L H +E++ ++ ++ L + Sbjct: 242 KSEEDKALVIAATGTGKTYMSAFDVIEYNPKKMLFLVHREEILRRSEKTFKKLVKNKNKT 301 Query: 80 AAGL--KRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTH 136 L K +F ++Q++ + F+ EF +++DE H I Y++++ + Sbjct: 302 TGLLTGNSKAIDSDYLFSTIQTMGKQFQNFKKDEFEYIVIDEAHHIS---SPLYERVINY 358 Query: 137 LTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYL 196 P LLG+TATP R I+ + + AL E+ LR ++ + Sbjct: 359 FE---PKF-LLGMTATPERCDGKNIFD------IFNNNVAL------EVRLREALELELV 402 Query: 197 TPPERLDMPVVQ-YDFSRLQAQSNGLFSEADLNRELKKQQRITPHI--ISQIMEFAA--- 250 P + ++ D S ++ Q DL+ E+ K+ + + I M F Sbjct: 403 IPFHYFGITDIEDIDLSDVKVQ--------DLD-EIAKRLNVNKRVDFIIDKMNFYGHDG 453 Query: 251 TRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQR--FRYLVN 306 ++ + F ++HAK + + +TG+ ER++ I+ + + + Sbjct: 454 EKRKCVGFCVNIDHAKYMADEFNKRGIHSVFLTGNNSANERELYIKKLEDDKDDLEVIFT 513 Query: 307 VAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 V + G D P ++LI +LRPT S ++ Q +GRGLR P KT +LD+ GN Sbjct: 514 VDIFNEGIDIPSINLILMLRPTNSPIVFIQQLGRGLRKYPNKTFLTVLDFIGN 566 >UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NIB5_METST Length = 937 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 152/354 (42%), Gaps = 58/354 (16%) Query: 22 RHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFA 80 ++ +++ TG GK+ A L + ++L L H +++ Q Y + E + Sbjct: 211 KNDKKGLLISATGTGKTFASAFALKEINPKKILFLVHREQIAKQAMKSYGKIFHEKTLGI 270 Query: 81 AGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHL 137 +K+ +F +VQ +++ N + + + F +++DE HR G YQ+I+ + Sbjct: 271 LSGNKKDYSVDFLFSTVQMMSKKENYERYNRDYFDFIVIDEVHRAG---SVSYQKIMNYF 327 Query: 138 TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT 197 NP + LG+TATP R + IY H + IYE+ L+ ++ L Sbjct: 328 ---NP-IFYLGMTATPDRSDEFDIYSLFNHNI------------IYEIRLKNALEEDMLC 371 Query: 198 PPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQI--MEFAATRKGV 255 F+ N + D+N K + +II I ++ +R Sbjct: 372 S------------FNYFGITDNAI----DVNDMSKTR---IDNIIENIEYYGYSGSRVKG 412 Query: 256 MIFAATVEHAKEIVGLLPAE------DAALITGDTPGAER----DVLIENFKAQRFRYLV 305 +IF + +AK +L E ++G+ ER D L+ + + Y++ Sbjct: 413 LIFCNNIHNAK----ILSKEFNNRGYRTLSLSGNNTQKERKDTIDRLVNDDRCDNLDYII 468 Query: 306 NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 V + G D V+ I +LR TES ++ Q +GRGLR K ++LD+ GN Sbjct: 469 TVDIFNEGVDIKEVNQIVMLRETESSIIFIQQLGRGLRKYSNKEFVVVLDFIGN 522 >UniRef50_Q486H0 Putative helicase n=1 Tax=Colwellia psychrerythraea 34H RepID=Q486H0_COLP3 Length = 516 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 102/356 (28%), Positives = 166/356 (46%), Gaps = 45/356 (12%) Query: 10 QEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHAK 68 ++A+DA N ++I LPTG GKS+ I +L + + +V++ LV Q Sbjct: 14 RKAIDAGAN--------SIIALPTGGGKSICILKLCQAMPDKKVVISLRNAALVPQLLHT 65 Query: 69 YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEES 128 GL + +G K + G V QS R + +L+ DE H +G Sbjct: 66 LTINGLSVSVVKSGYKYI-AGGDVTLVMEQSFGRR-KHLNIQCDVLLRDEYH-VG----C 118 Query: 129 QYQQILTHLTKVNPHLRLLGLTATPF-RLGKGWIYQFHYHGMVRGDEKALFRDCIYELPL 187 + +++P L ++GLTATP RLG +Y +K++ I E Sbjct: 119 MGGVYIAMREELSPDL-IIGLTATPIDRLG---VYI----------DKSM--QLIEETTT 162 Query: 188 RYMIKHGYLTPPERLDMPVV--QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQI 245 + +I+ G L P +P + + D+S ++ G FS + L+ L + + Q Sbjct: 163 KMLIEAGELAKPV-YKVPSLSQEIDYSAVK-MYRGDFSVSGLDNILLEHCSLVAQ---QT 217 Query: 246 MEFAATR-KGVMIFAATVEHAK---EIVGLLPAEDAALITGDTPGAERDVLIENFKAQRF 301 ++ A + + VM+FA ++ H + E LL E + E D I +K+ Sbjct: 218 VDDALSHGRKVMLFANSINHVESLSEAFDLLGIEHER-VHSQRSSDENDESIRRYKSNEV 276 Query: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 R ++N+++LT GFD P D + + RPT+ + LY QI+GR LR + GKT LILD A Sbjct: 277 RLIINMSMLTIGFDDPTTDCVVLARPTKILRLYLQIIGRCLRASKGKTSALILDLA 332 >UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax=Bacilli RepID=C6CS24_PAESJ Length = 1053 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 96/382 (25%), Positives = 168/382 (43%), Gaps = 44/382 (11%) Query: 3 FTLRPYQQ-----EAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLA-----RGR 51 F+++PY E ++A + RHK ++V TG GK+++ A + R A R R Sbjct: 322 FSIQPYDYQKEILEKLEAERTLYGRHKN--LLVAATGVGKTVISAFDYRRFAQRNPQRAR 379 Query: 52 VLVLAHVKELVAQNHAKYQALGLE---ADIFAAGLKRKE-SHGKVVFGSVQSVARNLDAF 107 +L +AH +E++ Q+ ++ + + ++ G + K H + S+ S+ Sbjct: 380 LLFVAHREEILKQSLDTFRFILKDLNFGELHVGGNQAKSLEHLFISIQSLNSMKLTEITT 439 Query: 108 QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 + +IVDE H YQ++L H P + LLGLTATP R+ + ++ Sbjct: 440 PDYYDFIIVDEFHHAA---APSYQKLLAH---YEPQI-LLGLTATPERMDGKDVLRY--- 489 Query: 168 GMVRGDEKALFRDCIY-ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 F D I E+ L I L P + + D S+++ G + +++ Sbjct: 490 ----------FDDTIAAEIRLTDAIDRKLLCPFQYFGVSD-HVDLSQVKWTRRG-YDQSE 537 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAEDAALIT--G 282 L + I++ + ++ V + F VEHA + + I+ G Sbjct: 538 LENLFTNNKIRATQILNSLRKYVTDLDEVKGLGFCVGVEHALYMAKVFNEAGIPSISLHG 597 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 + +RD + + + V + G D P V+ + LRPTES++++ Q +GRGL Sbjct: 598 GSSDEDRDQVKGRLARGEIKMVFVVDLYNEGVDIPEVNTVLFLRPTESLTVFLQQLGRGL 657 Query: 343 RLAPGKTDCLILDYAGNPHDLY 364 RLA GK +LD+ G H Y Sbjct: 658 RLAEGKECLTVLDFIGQAHKDY 679 >UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW00_9BACL Length = 937 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 158/369 (42%), Gaps = 54/369 (14%) Query: 10 QEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAK 68 Q + R +++ TG GK+ A + + R+L + H +E +A+ Sbjct: 193 QRSFIENFEKLRNQDNKGLLISATGTGKTFAAAFAMKSIGAKRLLFIVH-REQIAR---- 247 Query: 69 YQALGLEADIFAA----GL---KRKESHGKVVFGSVQSVARNLDAFQG----EFSLLIVD 117 QAL IF GL K K +F +VQ++++ D F+ F +I+D Sbjct: 248 -QALETFKTIFGTSRSYGLLTGKEKNIEADFIFSTVQTMSKE-DIFKSFNDSHFDEIIID 305 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E HR G D Y +++ + P LG+TA+P R IY+ + +V Sbjct: 306 EVHRAGAD---SYLRLMDYFK---PTF-YLGMTASPDRTDSFNIYELFNNNIV------- 351 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 YE+ L+ +++ L P + ++ D + S FS L +R+ Sbjct: 352 -----YEVRLKEAMENSLLCPFHYFGISDLEVDGKVIDELSE--FSN------LVSNERV 398 Query: 238 TPHIISQI--MEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLI 293 HIIS+I ++ R ++F ++ + AK + + +TG+ R+ I Sbjct: 399 -EHIISKINYYGYSGDRVKGLVFCSSKQEAKVLSEEFNTRGYNTTSLTGEDSQERREHEI 457 Query: 294 ENFKAQ---RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 A Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR + K Sbjct: 458 SKLVANDGDMLDYIFTVDIFNEGVDIPEVNQVIMLRPTQSFIIFIQQLGRGLRKSANKDF 517 Query: 351 CLILDYAGN 359 +I+D+ N Sbjct: 518 VVIIDFIAN 526 >UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=Lactobacillus RepID=Q1WS72_LACS1 Length = 951 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 84/366 (22%), Positives = 164/366 (44%), Gaps = 40/366 (10%) Query: 24 KTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQ-ALGLEADIFAA 81 K+ A++V TG GK+ + A + R L + H +++ + ++ +G ++ Sbjct: 231 KSKALVVSATGTGKTYLGAFAVKEYQPKRFLFVVHREQIAKKAMESFKKVIGGSGRLYGM 290 Query: 82 -GLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIGDDEESQYQQILTHL 137 R+++ K +F ++Q+V+++ LD F +++DE HR YQ+I+ + Sbjct: 291 LSGDRQDTQAKYIFSTIQTVSQDKILDQLPSNYFDYILIDEAHRSA---APSYQKIMHYF 347 Query: 138 TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF-RDCIYELPLRYMIKHGYL 196 P LG+TATP R+ +Y ALF + YE+ LR +++ L Sbjct: 348 ---KPDF-WLGMTATPERMDNQDVY-------------ALFDYNLAYEIRLRDALENKML 390 Query: 197 TPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGV- 255 +P + + + D + +N R L +R+ +I+ Q+ + + V Sbjct: 391 SPFHYIGVQDYEEDGITVDETTNL--------RYLTAPKRV-KYILDQLDYYGYSGLKVH 441 Query: 256 -MIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTT 312 ++F + + A E+ A +T R ++ + + Y++ V + Sbjct: 442 GLVFCSRQDEALELAQAFTDAGHQAKALTNQDSNERRRAVVRELEEGKIEYIITVNLFNE 501 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPK 372 G D P V+ + +LR T+S ++ Q +GRGLR PGK +LD+ GN + Y + + Sbjct: 502 GIDIPCVNQVVMLRNTQSSIVFIQQLGRGLRKYPGKDFVTVLDFIGNYKNNYLIPIALTQ 561 Query: 373 GKSDNV 378 S ++ Sbjct: 562 DNSRSI 567 >UniRef50_Q4L1F2 Gp65 n=1 Tax=Burkholderia phage BcepB1A RepID=Q4L1F2_9CAUD Length = 543 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 148/345 (42%), Gaps = 55/345 (15%) Query: 30 VLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRK--- 86 V TG+GK++ +A +G + +AH +ELV Q ++ G+ +I A R Sbjct: 3 VSATGSGKTVTAEAIASEVQGEGVAMAHRRELVGQLSLQWARAGIPHNIIAPKKTRDIIV 62 Query: 87 ------------ESHGKVVFGSVQSVARNLDA--FQGEFSLLIVDECHRIGDDEESQYQQ 132 H + SV ++A DA + LI DE H +++ + Sbjct: 63 RRHMKKLGKTTYTPHAQWSIASVDTLAVRADADGYLKRVKNLIGDEGHHF--LRSNKWGK 120 Query: 133 ILTHLTKVNPHLRLLGLTATPFRL-GKG---WIYQFHYHGMVRGDEKALFRDCIYELPLR 188 + LT + R + TATP R GKG W M+ G P+R Sbjct: 121 AIARLTSLE---RGVLFTATPERPDGKGLSTWTDGI-CDAMIEGP------------PMR 164 Query: 189 YMIKHGYL-------TPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 ++I GYL P L++ V+ + + G ++ L +KK + I + Sbjct: 165 WLIDQGYLLDYWLETVKPSDLNLEGVEI------SAATGDYNARQLAEAVKKSKSIVGDV 218 Query: 242 ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQ 299 ++ + A ++ V FA +EHA I L A + +++ D+ ER+ ++ + Sbjct: 219 VNTYVSKAWGQRWVT-FAVDIEHATRICEALRAAGVPSMVVSSDSTDEERESALQGLEDG 277 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 LVNV + GFD P++ I++ RPTES +Y Q GR LRL Sbjct: 278 TIWNLVNVDLFGEGFDLPNIAGISMARPTESFIVYAQQWGRVLRL 322 >UniRef50_C6BWP3 Type III restriction protein res subunit n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWP3_DESAD Length = 449 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 152/349 (43%), Gaps = 37/349 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LRPYQQ A+ + N +T ++ TGAGK+++ L + L++ H KEL+ Q Sbjct: 103 LRPYQQAALQSFSN-----QTQGLLEAGTGAGKTVMALALIAERKQPCLIIVHTKELLMQ 157 Query: 65 NHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIG 123 + Q LG+EA G K + ++Q+ L + F ++VDECHR Sbjct: 158 WIDRINQFLGIEAGQIGGG---KFKIKPLTVATIQTARNRLKDLKKTFGHIVVDECHRT- 213 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKALFRDCI 182 S +Q+++ + L GL+ATP+R G + +V L R+ Sbjct: 214 --PASTFQKVVKNFDAK----YLTGLSATPYRADGLDRMINLTLGPVVHRVNPDLLRNT- 266 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 G + PE + + F+ ++ L A + + + + I + Sbjct: 267 -----------GAILKPEIFTVETA-FRFAGNASEEYSLMMTA-IAEDYPRNKIIASCVS 313 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENFKAQR 300 ++ + T +++ A H + LL + A++TG TP ER+ +I + A + Sbjct: 314 KELQQNPGT---MLMVADRTAHLDALSDLLFDQGVEVAVLTGKTPAGEREEIINDLNAGK 370 Query: 301 FRYLVNVAVLT-TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 + L + A L GFD P + + + P +S QI+GR LR A GK Sbjct: 371 IKVLASTASLIGEGFDCPGLSTLFLCSPIKSKGRLVQIIGRILRPADGK 419 >UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NXV3_9DELT Length = 1196 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 147/338 (43%), Gaps = 28/338 (8%) Query: 27 AVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKR 85 ++V+ TG GK+ + A + RVL +AH +E++ Q A + + A ++ Sbjct: 433 GLVVMATGLGKTWLAAFDAGHCTARRVLFVAHREEILQQAAATFLRIRPRARAGFYLGRQ 492 Query: 86 KESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNP 142 +++ ++F S+Q++AR+ L F + F ++VDE H + Y+++L H NP Sbjct: 493 RDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFHHAA---AATYRRLLRHF---NP 546 Query: 143 HLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERL 202 LLGLTATP R + I +V Y L I L P Sbjct: 547 RF-LLGLTATPERTDQSDILSLCDDNLV------------YSCNLADGINAQLLAPFHYY 593 Query: 203 DMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATV 262 + D+ + + NG F L +L R H + Q + R + F +V Sbjct: 594 GIYDQSVDYREIPWR-NGRFDPDALVNKLATLARAR-HALEQWRQQGGKR--TLAFCVSV 649 Query: 263 EHAKEIVGLLP-AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDL 321 HA+ + A AA R + + R R + V + G D P +D Sbjct: 650 RHAEFMADQFSQAGIAAAAVYAGAAISRGDALARLRDNRLRVIFAVDLFNEGVDLPEIDT 709 Query: 322 IAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 + +LRPT+S L+ Q +GRGLR GK ++LD+ GN Sbjct: 710 VMMLRPTDSKILFLQQLGRGLRRVEGKEHLVVLDFIGN 747 >UniRef50_A3DN51 DNA repair helicase RAD25 n=1 Tax=Staphylothermus marinus F1 RepID=A3DN51_STAMF Length = 548 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 170/380 (44%), Gaps = 61/380 (16%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVA 63 LRPYQ+EA++A + ++ ++ LPTG+GK+L+ IA +A+ + R L++ + +E + Sbjct: 168 LRPYQREALEAWI----KNNGKGIVALPTGSGKTLIGIAAIAQTSL-RTLIITYTREQMF 222 Query: 64 QNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 Q + Y+ E + R++ + + QS RN+ F LLIVDE H + Sbjct: 223 QWREQIYKYTTAEPGLVGLIYSREKRLAPITITTYQSGFRNIKELSPFFDLLIVDEVHHL 282 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFR-----------LG-------------K 158 D +++ I H + +GL+ATP R LG Sbjct: 283 PAD---KFRYIAIH----SISRYRMGLSATPVREDGRHEELFPLLGGIIYYRSAAELANM 335 Query: 159 GWIYQFHYHGM---VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQ 215 G++ ++ + +R DEK LF D L Y + G + E LD ++ D + Sbjct: 336 GYLARYRVLTIKVGLRKDEKKLFED----LRKTYKVLSGGRSFNEVLD-SALKGD----E 386 Query: 216 AQSNGLFSEADLNRELKKQQRITPHIISQIMEFAAT--RKG--VMIFAATVEHAKEIVGL 271 N L + L K + I + +E A R+G ++IF +E AKEI Sbjct: 387 KAKNALRIHNQMRMILAKSK----SKIDKAVEIAEKEYRRGSKIIIFTQYIEQAKEIAEK 442 Query: 272 LPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESV 331 L +A L+TG+ P +R ++E FK + LV V G D P ++ I+ T S Sbjct: 443 L---NAYLLTGEVPVEKRKRVLEEFKNRDNGILVVTTVGDEGLDIPDANVGIIVSGTGSR 499 Query: 332 SLYQQIVGRGLRLAPGKTDC 351 + Q +GR LR P + Sbjct: 500 RQFIQRLGRILRPKPNGVEA 519 >UniRef50_B1L767 Type III restriction protein res subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L767_KORCO Length = 492 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 97/360 (26%), Positives = 156/360 (43%), Gaps = 47/360 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAE-LARLARGRVLVLAHVKEL 61 F+L +Q+ AV + R +V+PTGAGK+ V E + R +R L+ +E+ Sbjct: 125 FSLYDFQEAAV----GEWERSGRFGTVVMPTGAGKTYVGLEAIFRTSRS-TLICVVTEEM 179 Query: 62 VAQ-NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 Q + L + IF+ R++ + G SVA+++D+ +FSL+I DE H Sbjct: 180 AEQWRELIREKLSFDPGIFSG---RRKEIKPITVGIYNSVAKHIDSLYDKFSLVIFDEVH 236 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR- 179 + S ++++ +K L GL+ATP R G++ +F Sbjct: 237 HV---PASTFKEV-AFRSKAKYRL---GLSATPERAD--------------GNDHLIFLT 275 Query: 180 --DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL------ 231 + +Y + ++ G+L P + V D R + + D R+L Sbjct: 276 SGEIVYRISFPELLSRGFLAPVRHHIIYVDLSDEERREMSRELFLARNDDERKLIEKKYA 335 Query: 232 -KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE-DAALITGDTPGAER 289 K + +I + +IME RK V+IF ++ A+EI L L+ G T G R Sbjct: 336 LKAKNKIRE--VLRIMEEVKDRK-VLIFTEYIDQAEEIYRELRKRYKVELMIGKTSG--R 390 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + E FK +V VL G D P D+ I+ + S Q VGR +R APGK Sbjct: 391 SEIFERFKRGEINVIVTTRVLDEGIDVPDADVAIIVSGSGSRRQMAQRVGRVVRGAPGKV 450 >UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN84_SULIN Length = 763 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 167/378 (44%), Gaps = 69/378 (18%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLA-RGRV---LVLAHVK 59 LR YQ+ AV + F K ++ + TG GK+ +V+A +A+L G+V L L Sbjct: 143 LRNYQKIAVQQIITSFLSGKKRMLVEMATGTGKTEVVMAAIAKLLDEGKVKNVLYLVDRD 202 Query: 60 ELVAQNHAKYQA-LGLEADIFAAGLKRKESHGKVVFGSVQS--VARNLDAFQGE-FSLLI 115 L Q + ++ A LG + +I + ++ +VQ V F + F L++ Sbjct: 203 SLATQTYQRFNARLGDKYNIRKLSGDINDLSADIIISTVQMLYVDEKFKLFNSDHFQLIV 262 Query: 116 VDECHR--IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM---- 169 +DE HR GD + +++ + K +LGLTATP ++ K + F Y G Sbjct: 263 LDEAHRSYYGD-----WHKVVQYFNKA----AVLGLTATP-KIDKD-VDNFAYFGYPIFR 311 Query: 170 ---VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 RG + D IY + +LT + + + YDF N L + D Sbjct: 312 YTYSRGVKDGYLADTIY---------YKFLTNVDIYGIHDLGYDFD-----PNDLGKKVD 357 Query: 227 LNRELKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAK-----------EIVGLLP 273 + + + + + F T+ K ++FAA+++HA+ E++G P Sbjct: 358 I----PMRNELIAEKYFEAINFKETKELKKAIVFAASIKHAENLRLAFIRKYNELMGYSP 413 Query: 274 AEDAA-----LITGDTPGAERDVLIENFKA--QRFRYLVNVAVLTTGFDAPHVDLIAILR 326 A I P E L+ F++ R + V +L+TG DAP V++I + R Sbjct: 414 DNAEAEEIFRSIHSAIPNHEE--LVREFQSPNSRIKVAFTVDLLSTGVDAPDVEVIVMAR 471 Query: 327 PTESVSLYQQIVGRGLRL 344 PT+S LY Q+ GRG R+ Sbjct: 472 PTKSRVLYLQMKGRGTRI 489 >UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X332_DESRD Length = 979 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 89/370 (24%), Positives = 173/370 (46%), Gaps = 44/370 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA++ L R ++ TG GK+ + A + + + + L +AH ++++ + Sbjct: 366 QGEALEGLLKLRNRKARSGAVIAATGVGKTYLAAFDFIQSGKDKCLFIAHREDILRKAKE 425 Query: 68 KY-QALGLEADIFAAGLKRKESHG-KVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRI 122 + LG E +G ++ SHG + VF +Q++ R N++ F EF +++DE H Sbjct: 426 SFSHVLGPEGLEIFSGRSKEISHGSRAVFAMIQTLGRQDNMERFHPEEFDYIVMDEFHHA 485 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKALFRDC 181 + Y+++L + P LLGLTATP R+ G+ ++ Y+ E LF+ Sbjct: 486 M---AATYRRVLDYF---QPDF-LLGLTATPERMDGRDVLWLCDYNIAY---EMRLFQAI 535 Query: 182 IYEL--PLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 EL P +Y H P D++++ + + + +L + L R T Sbjct: 536 DKELLAPFQYFAVHD----------PT---DYAQISWKRTD-YDQEELTKALANDTRTTI 581 Query: 240 HIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAE---DAALITGDTPGAERDVLIE 294 I + + +F + + + F ++V+HA+ L E +A + GD+ +R+ + Sbjct: 582 -IANNLKKFLPYQGKIKALAFCSSVDHAQYTAARLTQEHDFEAMALVGDSSQDQREEAVA 640 Query: 295 NFKAQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG---KT 349 + + + + V + G D P + + +LRPT+S +++ Q +GRGLR + Sbjct: 641 RLEEENDPLKLICCVDIFNEGIDIPKLSHVLLLRPTQSFTVFLQQLGRGLRKIQSEDVEK 700 Query: 350 DCLILDYAGN 359 +++D+ GN Sbjct: 701 HLVVIDFVGN 710 >UniRef50_Q4HNM6 Type I restriction-modification system, R subunit n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HNM6_CAMUP Length = 813 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 104/419 (24%), Positives = 174/419 (41%), Gaps = 81/419 (19%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR------LARGR----VL 53 T R YQ A++A L ++ ++ ++VL TG GK+L+ ++A L G+ +L Sbjct: 168 TPRYYQNNAINAALIATQKGQSRILLVLATGTGKTLIAYQIAHRLFNQTLPNGKKIEKIL 227 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-----KVVFGSVQSVARNLDAFQ 108 LA EL+ + + FA G+ + E+ + FG Q + Sbjct: 228 YLADRNELINTDTTR------TFKSFAKGIYKIENRNFKSGYSLYFGIYQQFISGSEENN 281 Query: 109 GE-----------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLG 157 + F L+ +DECHR +S +++IL + N L++ G+TATP + Sbjct: 282 DKKEHYKALKPDFFDLIFIDECHRGSARADSTWREILEYF---NSALQI-GMTATP-KYN 336 Query: 158 KGWIYQFHYHGMVRGDEKAL--FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQ 215 K + + D+ + F + +Y+ L+ I GYL P V++ + S ++ Sbjct: 337 KEQRESQEAGELEKRDDDNIDYFGEPVYQYSLKQGIDDGYLAP-----FSVIE-NLSNIE 390 Query: 216 AQS----------------NGLFSEADLNRE--LKKQQRITPHIISQIMEFAATR--KGV 255 Q F+ D NR LK Q R +S+ + Sbjct: 391 MQGYTPELGKRDEEGREIPQETFNSPDFNRTIYLKPQIRFVAKKVSKFLHHTLKNPYAKT 450 Query: 256 MIFAATVEHAKEIVGLLPAEDAALITGDTPGAER--------DVLIENFKAQRFRYLV-- 305 +IF HA + L E+ + D+ R L++NFK+ RY V Sbjct: 451 IIFCEDQRHALLMKDALQDENKQEVAKDSNYITRITSDDDKGKALLDNFKSVSKRYPVIA 510 Query: 306 -NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL-----APGKTDCLILDYAG 358 +L+TG D V +I I + SL++Q++GRG RL + GKT +LD+ G Sbjct: 511 TTSQLLSTGVDTQMVQVIVIDKIVRDKSLFKQMIGRGTRLNEVLESKGKTHFYVLDFKG 569 >UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F8_ACTP7 Length = 787 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 95/392 (24%), Positives = 161/392 (41%), Gaps = 57/392 (14%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLAHVKE 60 R YQ+ A++ T+ + + ++V+ TG GK+ ++ A A+ +VL LA Sbjct: 175 RYYQENAINLTIEAVAKGRNRILLVMATGTGKTYTAFQIIHRLKASGAKRKVLFLADRNV 234 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD-----AFQGEF-SLL 114 LV Q + + + K+ +S +V Q + D FQ F L+ Sbjct: 235 LVDQPMTQ-DFKPFKDKMVKVSNKKLDSSFEVYLALYQQLDGETDNELFKQFQPSFFDLI 293 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 I+DECHR E+S ++ IL + + +G+TATP Sbjct: 294 IIDECHRGSAKEDSNWRAILNYFNEATH----IGMTATP-------------KETADASN 336 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQYDFSRLQAQSNGLFSEA----- 225 + F D IY L+ I+ G+L P LD + + ++ NG E Sbjct: 337 ISYFGDPIYTYSLKQSIEDGFLAPYRVIRVDLDCDLKGWRPTKGLTDKNGELVEDRLYTI 396 Query: 226 ---DLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--- 279 D N L + + I++ ++ ++F A + HA+ +V L +A + Sbjct: 397 KDFDYNIILNDRTCLVAERITEFLKKTNRLDKTIVFCANINHAQRMVAELSRLNADMLAK 456 Query: 280 -------ITGDTPGAERDVL----IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPT 328 ITGD G D+ ++N V ++TTG D+ L+ + Sbjct: 457 NPKYIRQITGDQTGKNDDLEAFCDVQNEGNAYPVIAVTSKLMTTGVDSKTCKLVVLDANI 516 Query: 329 ESVSLYQQIVGRG--LRLAPGKTDCLILDYAG 358 +S++ ++QI+GRG LR GK ILD+ G Sbjct: 517 QSMTEFKQIIGRGTRLRTDAGKEFFTILDFRG 548 >UniRef50_B5FA21 Type I restriction-modification system, R subunit n=8 Tax=Bacteria RepID=B5FA21_VIBFM Length = 816 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 100/424 (23%), Positives = 171/424 (40%), Gaps = 84/424 (19%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA----------------RLA- 48 R YQ+ A++A L+ + ++ L TG GK+ + ++A LA Sbjct: 160 RYYQENAINAALDAVAKGAPKILLTLATGTGKTSIAFQIAWKLFNSKWSVKAQKKPELAK 219 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKRKE----SHGKVVFGSVQSVAR 102 R R+L LA L Q + G +A I + RK +G V F Q+ Sbjct: 220 RRPRILFLADRNILANQAFNDFSPFGDDAIIRISPDEVRKNGGVPKNGSVFFTIFQTFMS 279 Query: 103 NLDAFQGE-----------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 D+ + F +I+DECHR G +ES ++ IL + + LGLTA Sbjct: 280 GKDSEGNDAPYFGSYSPDFFDFIIIDECHRGGAHDESSWRGILEYFSSA----VQLGLTA 335 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM--PVVQY 209 TP RL Y++ F +Y L+ I G+LTP + + + +Y Sbjct: 336 TPKRLDNANTYKY-------------FGKPVYSYDLKSGINDGFLTPFKVYTIVGTLDKY 382 Query: 210 DF-------SRLQAQSNGLFSEADLNRE------LKKQQRITPHIISQIMEFAATRKGVM 256 + R + + ++ E D N ++++R+ M+ + + Sbjct: 383 TYLPGDGVVVRGKVEPGRVYEEKDFNHNRGISIPAREEKRV-----HYWMDRINPNEKTI 437 Query: 257 IFAATVEHAKEIVGLLP--AEDAA----------LITGDTPGAERDVLIENFKAQRFRYL 304 +F T EHA E+ L+ A+ + D E D+ + + + + Sbjct: 438 VFCMTQEHAGEVRDLINQYAQKKGGSDNLNYCVRITADDGKSGEADLELFSDNEKTIPTI 497 Query: 305 VNVA-VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 V + L+TG DA +V I ++RP + ++QI+GRG RL K + D+ H+ Sbjct: 498 VTTSRKLSTGVDARNVRNIVLMRPCTDMIEFKQIIGRGTRLYDKKDFFSVFDFVQAHHNF 557 Query: 364 YAPE 367 P+ Sbjct: 558 SDPD 561 >UniRef50_D1YJ29 Type III restriction enzyme, res subunit n=1 Tax=Lactobacillus gasseri 224-1 RepID=D1YJ29_9LACO Length = 371 Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 57/332 (17%) Query: 41 IAELARLARGR---VLVLAHVKELVAQNHAKY--QALGLEADIFAAGLKRKESHGKVVFG 95 +AELAR + VL + H +E+V Q ++ Q + ++ I +K K Sbjct: 1 MAELARRMTSQNRNVLFIVHRQEIVEQIQDEFSQQEVNMDHCICTTVVKAKN-------- 52 Query: 96 SVQSVARNLDAFQG-EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPF 154 R LD + L++ DE H YQ+I + P+ +G TATP+ Sbjct: 53 ------RLLDPDNTWKPDLILTDETHH---SRAKTYQKIYHYF----PYALRVGFTATPW 99 Query: 155 RL-GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP----PERLDMPVVQY 209 RL GKG+ + ++ D I + ++I++ +L P ERL Sbjct: 100 RLSGKGF--------------EDIYEDLIIGPSVSWLIRNKHLAPFKYYSERL------I 139 Query: 210 DFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIV 269 D L S G ++ + +E+ + Q I ++ +FA + ++ +A V+++++IV Sbjct: 140 DTDDLSKASTGDYTTKSITQEVNRHQ-ILGDVVESYKKFANGEQTIL-YAHDVDYSQKIV 197 Query: 270 GLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRP 327 +A TP ERD ++ +F+ + + L NV +++ GFD P + +LRP Sbjct: 198 KRFQDNGINAKHCDSTTPAKERDRIMNDFREGKIKILSNVDLISEGFDVPDCSCVILLRP 257 Query: 328 TESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 T S+ + Q R +R P K I+D GN Sbjct: 258 TASLVIDVQQSMRCMRYKPNKI-AKIIDLVGN 288 >UniRef50_C8U7L2 Predicted helicase n=17 Tax=root RepID=C8U7L2_ECO10 Length = 506 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 102/413 (24%), Positives = 177/413 (42%), Gaps = 71/413 (17%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA--ELARLARG-RVLVLAHVKELVAQN 65 Q+ ++ + +++H+T ++ PTG+GK+ + A + RG RV+ + L+ Q Sbjct: 10 QERGLNQLRHQWKQHRT-YLMYAPTGSGKTGLAAFVTAGMVERGMRVMFVCPYTILLNQT 68 Query: 66 HAKYQALGLEADIFAAGLKRKESHGK---VVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 ++ GL + + + ++ + S ++ R F LLI+DE H Sbjct: 69 AERFTEYGLPWEEISFVWRDHPNYDPSRLIQIASADTLIRR--EFPDNIDLLIIDEAH-- 124 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 ++ L + + + +R+LGL+ TPF W+ +++ +C+ Sbjct: 125 ------MKRRALLEVIR-DRDIRVLGLSGTPF---AAWMGKYY--------------ECL 160 Query: 183 YE-LPLRYMIKHGYLTPPERL--DMPVVQYDFSRLQAQSNGLFSEADLNRE----LKKQQ 235 + +R +I+ G L+ E MP D + ++ SN +F D N E + Sbjct: 161 LKPTTIRELIQRGDLSDYEFFAPSMP----DLAGVKT-SNTVFGR-DYNEEQLASIMGSS 214 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG--LLPAEDAALITGDTPGAERDVLI 293 + I+ +E + F V HA + L A ++T DT ER +I Sbjct: 215 DLVGDIVRNWLENGEDLP-TICFCVNVAHANFVTREFLQAGIGAEVMTADTLHDERQDII 273 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 F+ + +VNV VL GFD+ V + RPT+S + Q +GR LR APGK LI Sbjct: 274 RRFEEGATKIIVNVGVLVAGFDS-DVRCLIYARPTKSEIRWLQCIGRALRTAPGKKRALI 332 Query: 354 LDYAGNPHDLYAPE-----------------VGTPKGKSDNVPVQVFCPACGF 389 D++G H L PE G + K++ +P + CP C F Sbjct: 333 FDHSGTVHRLGFPEDIEYDELPGKNDGMKASAGGGEVKAEKLPRE--CPKCHF 383 >UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 Tax=Gammaproteobacteria RepID=T1RK_ECOLI Length = 1170 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 125/458 (27%), Positives = 197/458 (43%), Gaps = 64/458 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 59 LR YQ++AV A + + ++ + TG GK+ IA + RL + R+L L + Sbjct: 445 LRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRR 504 Query: 60 ELVAQNHAKYQALGLEADIFAA-----GLKRK--ESHGKVVFGSVQS-VARNLDAFQ--- 108 L Q ++ + D F + GL K E K+ +VQS V R L + + Sbjct: 505 SLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMP 564 Query: 109 -GEFSLLIVDECHR--IGDDEESQYQ-QILTHLTKVNPHLRLL--------GLTATP--- 153 + ++VDE HR I D E+++ + Q + L V+ + R+L LTATP Sbjct: 565 VARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALH 624 Query: 154 -FRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS 212 ++ +Y++ Y V D + +D ++ R + YL+ E+++ Q + Sbjct: 625 TVQIFGEPVYRYTYRTAV-IDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVI 683 Query: 213 RLQAQSNGLFSEADLNREL--KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG 270 + + F AD NR L R + ++ ++ ++K ++F T HA +V Sbjct: 684 NDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQK-TLVFCVTNAHADMVVE 742 Query: 271 LLPA----------EDAAL-ITGDTPGAERDV--LIENFKAQRF-RYLVNVAVLTTGFDA 316 L A DA + ITGD R V +I F +R +V V +LTTG D Sbjct: 743 ELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI 802 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKT-----DCLILDYAGNPHDLYAPEVG 369 P + I LR S LY+Q+ GR RL P KT DC+ + D P V Sbjct: 803 PSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVDTMRPVVV 862 Query: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADG-TLIEH 406 PK V +Q + T+ T ADG + EH Sbjct: 863 RPK-----VELQTLVNEITDSETY-KITEADGRSFAEH 894 >UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11 Tax=Bacteria RepID=Q167L8_ROSDO Length = 782 Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 104/419 (24%), Positives = 166/419 (39%), Gaps = 87/419 (20%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-------------LARGRV 52 R YQ AV+A L + + ++ L TG GK+ + ++A R R+ Sbjct: 165 RYYQAAAVNAVLEALAQDEKRILLTLATGTGKTSIAFQIAWKLFQSRWNLSGAPTRRPRI 224 Query: 53 LVLAHVKELVAQNHAKYQALGLEA-------DIFAAGLKRKESHGKVVFGSVQSVARNLD 105 L LA L Q + + A +A +I G + + V F Q+ Sbjct: 225 LFLADRNILADQAYNSFSAFAPDALSRINPKEISKKG--KMPRNASVFFTIFQTFMTENK 282 Query: 106 AFQGEFSL----------LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR 155 + + EF+ +I+DECHR G +ES ++ IL + P ++L GLTATP R Sbjct: 283 SGEAEFNFREYEPDFFDFIIIDECHRGGAKDESSWRGILEYFA---PAVQL-GLTATPKR 338 Query: 156 LGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP--VVQYDFSR 213 V D F + +Y LR I G+LTP + M + Y + Sbjct: 339 -------------KVNADTYTYFGEPVYTYALREGIDDGFLTPFKVRQMASTIDTYVYDP 385 Query: 214 LQAQSNG------LFSEADLNREL----KKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 G ++E ++N ++ ++Q RI + M+ R+ ++F AT Sbjct: 386 EDEVVGGDVDPDHEYTEDEINAKIVIPAREQSRI-----HEFMDQINPRQKTLVFCATQN 440 Query: 264 HAKEIVGLL---------------PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVA 308 HA + + A D AL G + ++ + L Sbjct: 441 HAAAVCDYINQIKDIEDPHYCERVTANDGAL------GEQHLREFQDNERSIPTILTTSQ 494 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPE 367 L+TG DA +V I ++RP +S+ ++QIVGRG R GK I D+ PE Sbjct: 495 KLSTGVDARNVRNIVLMRPIKSMVEFKQIVGRGTRTFEGKDFFTIYDFVKAYEHFNDPE 553 >UniRef50_B6G1B2 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1B2_9CLOT Length = 912 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 72/366 (19%) Query: 29 IVLPTGAGKSL--VIAELARLARG--RVLVLAHVKELVAQN-----HAKYQALGLEADIF 79 +V+PTG GK+ V L + ++L LAH EL+ Q + Y+ + + F Sbjct: 1 MVIPTGGGKTFTAVYWALKEIINNNQKILWLAHRHELLNQTLKTAINTSYKDILPNRENF 60 Query: 80 AAGLKRKESHGKV----------VFGSVQSVARNLDAFQG------EFSLLIVDECHRIG 123 + + + + + S S+ NL+ + + L++DE H Sbjct: 61 SYRIISGSNEHDIPVNIDKDDDFIIASKDSLNHNLEYLENWLVNNKDNVCLVIDEAHHAT 120 Query: 124 DDEESQYQQILTHL-TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 Y++I+ L + ++LGLTATP R + G++ +F D I Sbjct: 121 ---AKTYRRIIDLLKSTCKNKFKILGLTATPMRTNQ------KEEGLL----GKIFTDGI 167 Query: 183 -YELPLRYMIKHGYLTPPE--------RLDMPVVQYDFSRLQAQSN---GLFSEADLNRE 230 Y + L+ +I + L+ PE ++D + Y+ ++ N + S+ LN+E Sbjct: 168 CYSVDLKTLINNSILSTPEFIELETKYKVDRELTSYELQAVKNFKNIPDDIASDIALNKE 227 Query: 231 LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL------------PAEDAA 278 + I H I+ ++ ++FA V HA + L +DA Sbjct: 228 --RNNYIVNHYINNKEKYGK----CLVFALNVNHAITLSALFNQKGIKSDYVVSSIKDAY 281 Query: 279 LITGDT-PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 TG T E ++ I NF+ + L+NV +LT G D P V+ + + RPT S L Q+ Sbjct: 282 --TGVTISNQENEIKISNFRNGKLDVLINVNILTEGTDIPDVETVFLTRPTTSSILMNQM 339 Query: 338 VGRGLR 343 +GRGLR Sbjct: 340 IGRGLR 345 >UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobacteria RepID=A6EW89_9ALTE Length = 1282 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 102/381 (26%), Positives = 168/381 (44%), Gaps = 76/381 (19%) Query: 9 QQEAVDAT----LNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVA 63 QQEA++A + +RR ++VL TG GK+ + A + A++ R+L +AH +E++ Sbjct: 400 QQEALEALDLTRMEGYRR----GLVVLATGLGKTWLSAFDAAQMGARRILFVAHREEILY 455 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFSLLIVDECH 120 Q Y + + + K+++ ++ SVQ++ + +L+ F F ++VDE H Sbjct: 456 QAAETYLRIKPNSRVGFYMGKQRDRTVDILCASVQTLGKETHLERFDPRHFDYIVVDEFH 515 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 Y ++L + P LLGLTATP R R D +L D Sbjct: 516 HAA---APVYHRLLNYFA---PQF-LLGLTATPDRTD-------------RSDILSLCDD 555 Query: 181 -CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL-------- 231 ++E PL +K +L P + D++ + + NG F L +L Sbjct: 556 NLVFEYPLFEGVKRRFLVPFHYYGIYDETVDYTEIPWR-NGKFDPNLLANKLATYGRAKQ 614 Query: 232 -------KKQQRITPHIISQI-MEFAA---TRKGVMIFAATVEHAKEIVGLLPAEDAALI 280 +KQ R +S++ +F A +RKGV +A V E+ Sbjct: 615 VHRVWGEQKQSRTLAFCVSRVHADFMADQFSRKGVR--SAAVHGESEM------------ 660 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 R +E + + + +V + G D P +D + +LRPTES L+ Q +GR Sbjct: 661 -------SRGEALEKLENGQLDVIFSVDLFNEGVDLPAIDTVLLLRPTESKILFLQQIGR 713 Query: 341 GLR--LAPGKTDCLILDYAGN 359 GLR A GK +ILD+ GN Sbjct: 714 GLRKSSATGKDKLVILDFVGN 734 >UniRef50_A8ZTH8 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTH8_DESOH Length = 619 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 170/386 (44%), Gaps = 75/386 (19%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARGRVLVLA------- 56 LR Q E T HFR A++ +P G GK+ ++A L +A+GRVLV+A Sbjct: 23 LRDPQVEGWFRTRQHFRNSSEHAILQIPVGCGKTGLMALLPFGIAQGRVLVIAPNLEIRR 82 Query: 57 ----------------HVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQ 98 + + L NH Y A+ G +A+I + SH +V ++Q Sbjct: 83 GISTAFDIAGRDCFWTYTRVLTDVNHGPYTAVLDGQDANIHDC----ENSH--IVVTNIQ 136 Query: 99 SVA----RNLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATP 153 +A R L AF +F L++VDE H + ++++ P+ +++ LTATP Sbjct: 137 QLASRADRWLPAFPDDFFDLIMVDEGHH---NVARSWERVFERF----PNAKVVSLTATP 189 Query: 154 FRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFS- 212 FR GD + + + +Y P R + GY+ +++ + F+ Sbjct: 190 FR----------------GDGREIAGEVVYAYPFRTAMVRGYIKQITAVNVAPQEISFTY 233 Query: 213 RLQAQSNGLFSEADLNRE--LKKQQRITPHIISQIMEFA----------ATRKGVMIFAA 260 R ++ + L L E + + P I++ + T ++ A Sbjct: 234 RGDSRHHTLDEVLQLRDEEWFSRGVALAPECNRSIVDASIQWLQHLRESGTFHQLIAVAC 293 Query: 261 TVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPH 318 +V+H++++ L +A I + P + + ++++ + R +V V +L GFD P+ Sbjct: 294 SVDHSRQVRSLYAERGLNAREIHSNMPADQIEEVLQDLRRSRIDCIVQVRMLGEGFDHPN 353 Query: 319 VDLIAILRPTESVSLYQQIVGRGLRL 344 + + AI +P S+S Y Q +GR +R+ Sbjct: 354 LSVAAIFQPFRSLSPYVQFIGRVMRV 379 >UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=Corynebacterium RepID=C2CT05_CORST Length = 1212 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 118/435 (27%), Positives = 180/435 (41%), Gaps = 81/435 (18%) Query: 6 RPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQ EA+ A R + A++V+ TG GK+ V ARL R G+VL LA Sbjct: 430 RTYQLEAIRAVTETLEARRRRQALLVMATGTGKTRVAVATARLLRQAGWVGKVLFLADRT 489 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG---------E 110 LV Q H + ++ E+ +K E G V+ + + NL G + Sbjct: 490 ALVNQAHKAFVSMYAESTPVNL-IKNPEQVGD-VYVTTYNTMMNLIGDDGDTPAKFGPFD 547 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+IVDE HR +++++IL + ++GLTATP K I Y Sbjct: 548 FDLIIVDEAHR---SVYNRFKRILEYFDAY-----VVGLTATP----KSEIDHDTYALFE 595 Query: 171 RGDEKALFRDCIYE-----------------LPLRYMIKHGYLTPPERLDMPVVQY---- 209 D+ F + E L LR + + L+P E+L + Sbjct: 596 MEDKTPSFEYSLDEAVADGNLVPFKTARQDSLFLRRGMSYDELSPEEQLAWDTSDWGTDE 655 Query: 210 DFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG-----VMIFAATVEH 264 D RL G S A++NR L + I ++ ++E G +IFA T H Sbjct: 656 DGGRLDPP--GQVSSAEINRYLFNKDTIR-KVLKTVVENGIRVGGDQLGKTIIFARTQRH 712 Query: 265 AKEIVGLLPA-------EDAALITGDTPGAERDVLIENFKAQ--RFRYLVNVAVLTTGFD 315 A+ I + A A++IT T A+ +++F ++V +L TG D Sbjct: 713 AELIKQVFDATFPEYSRTGASVITTHTKYAQS--ALDDFADPDGDVNIAISVDMLDTGVD 770 Query: 316 APHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPE- 367 P V + +P S + + Q+VGRG RL P KT LI D+ GN + + E Sbjct: 771 VPEVVNLVFFKPVYSPTKFWQMVGRGTRLRPDLFGPGMDKTHFLIFDFCGNVDEFFKGEA 830 Query: 368 ----VGTPKGKSDNV 378 G P+ S+ + Sbjct: 831 RESATGRPRSLSEKL 845 >UniRef50_Q2S088 Putative helicase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S088_SALRD Length = 783 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 162/388 (41%), Gaps = 67/388 (17%) Query: 5 LRPYQQEAVDATLNHF---RRHKTPAVIVLPTGAGKSLVIAELA-RLARGRVLVLA---H 57 LR Q+E A +HF R + PA++VLPTG GKS ++A +A GRVLV+A Sbjct: 137 LRTPQEEGYLALRDHFSAERATQRPAIVVLPTGCGKSGLLACAPFGIAEGRVLVVAPNLT 196 Query: 58 VKELVAQNHAKYQALG--------LEADI-------FAAGLKRKES--HGKVVFGSVQSV 100 +K+ +A+ + G L D G +E V+ +VQ + Sbjct: 197 IKDGLAE--GTFSGTGNFYHFCDVLPPDARLPRVVALERGRVNEEDCRRADVIVANVQQL 254 Query: 101 ARNLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 L F +F L++VDE H D Q P + + TATPFR Sbjct: 255 QGWLPLFPSDFFDLILVDEAHHAPADSWQNVNQAF-------PDAKKIYCTATPFR---- 303 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDF-------S 212 DE+ + + +Y L I GY+ R+D + F S Sbjct: 304 ------------SDERPIRAEPVYRYALADAINAGYVKNIVRVDAVASEMTFTVEGEERS 351 Query: 213 RLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEF--AATRKG-----VMIFAATVEHA 265 + + L E +R + I+ + ++ A TR+G ++ A ++ HA Sbjct: 352 FTREEIMDLREETWFSRGVALSDVCNETIVDRSVQLLQAKTRRGTERHQILAAACSIRHA 411 Query: 266 KEIVGLLPA---EDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLI 322 +++ L + E A + + ER+ + ++ +V+V +L G+D ++ + Sbjct: 412 EQVAALYRSRGVEAAFVASRGMTTEERERRLRAYEHGDLDTMVHVGILGEGYDNKNISIA 471 Query: 323 AILRPTESVSLYQQIVGRGLRLAPGKTD 350 A+ RP SV+ Y Q VGR LR P T+ Sbjct: 472 ALFRPFRSVAPYTQFVGRALRALPNGTE 499 >UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Tax=Actinomycetales RepID=A0JTK4_ARTS2 Length = 1063 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 37/346 (10%) Query: 28 VIVLPTGAGKSLVIA-ELARL--ARGR---VLVLAHVKELVAQNHAKYQAL---GLEADI 78 ++V TG GK+++ A + RL A GR +L +AH +E++ Q Y+ + G ++ Sbjct: 348 LLVAATGTGKTVIAALDYKRLCEAAGRDLKLLFVAHRQEILKQAMRTYRDVMQDGAFGEL 407 Query: 79 FAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---FSLLIVDECHRIGDDEESQYQQILT 135 + + K + K +F SVQS++ +L Q E F ++++DE H Y+++L Sbjct: 408 YVG--EHKPAQWKHIFASVQSLS-SLGIEQLEPDFFDVVVIDEFHHA---MAPTYRRLLD 461 Query: 136 HLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGY 195 HL P +LLGLTATP R G G + E L+ +L ++ Y Sbjct: 462 HL---QPQ-QLLGLTATPER-GDGVDVAKQFFDGRTASELRLWDALDADL----LVPFHY 512 Query: 196 LTPPERLDMPVVQYDFSRLQA-QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG 254 + +D+ +++ Q N L++ D + ++ + ++ R Sbjct: 513 FGVSDDVDLSQLEWKRGNYDTTQLNNLYTGND-----ARAAKVIRELRDKVTSTDQMR-- 565 Query: 255 VMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIENFKAQRFRYLVNVAVLTT 312 + F +V+HA + + A + G T A+R +E + + + V + Sbjct: 566 AIGFCVSVQHAHYMAEVFNRAGIASVAVDGSTDDADRAAALERLRRREINCIFAVDLYNE 625 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 G D P VD I +LRPT+S +++ Q +GRGLR A GK ++D+ G Sbjct: 626 GLDLPQVDTILLLRPTQSATIFLQQLGRGLRRAEGKAVLTVMDFIG 671 >UniRef50_A2BMA0 DNA or RNA helicases of superfamily II n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMA0_HYPBU Length = 540 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 166/386 (43%), Gaps = 71/386 (18%) Query: 5 LRPYQQEAVDATL-NHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELV 62 LR YQ EA++A + N +R VI LPTGAGK++V +A +ARL + L++ + KE V Sbjct: 162 LREYQAEALEAWVENSYR-----GVIALPTGAGKTIVALAAIARL-KLPTLIVVYTKEQV 215 Query: 63 AQNHAKYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 + K + L L + A ++ + + QS +++ F LL+VDE H Sbjct: 216 REWLEKIRKFLALPLGMVGAYYSDEKRLAAITVTTYQSAYQHIGLLYNRFGLLVVDEAHH 275 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR-- 179 + D +++ I + + P+ L L+ATP+R G + LFR Sbjct: 276 LPAD---KFKLIAEKI--LAPY--RLALSATPYRED--------------GRHEELFRLV 314 Query: 180 -DCIYELPLRYMIKHGY------------LTPPERLDMPVVQYDFSRLQA--QSNGLFSE 224 IYE L+ + + G+ L P E+ ++ ++ L A + L Sbjct: 315 GGVIYEKSLQELAERGFVASFQVIPVLVNLEPDEKKKYEKLKNEYKVLSAGRKVEELVKA 374 Query: 225 ADLNRELKKQQRITPHIISQIMEFAATRKG------------------VMIFAATVEHAK 266 A E K+ ++SQ+ A + +++F +E A+ Sbjct: 375 ASAGDERAKK---ALQLLSQMRLLVALSRAKLAEAKRIVDSELAKGSKILVFTQYIEQAE 431 Query: 267 EIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILR 326 + +L A +IT T A R + E FK R+R LV V G D P ++ IL Sbjct: 432 RVGKIL---GAPVITSKTDKARRALAFELFKRGRYRVLVLTTVGDEGIDVPDANVGLILS 488 Query: 327 PTESVSLYQQIVGRGLRLAPGKTDCL 352 T S + Q +GR LR PGK L Sbjct: 489 GTSSRRQFIQRLGRLLRPQPGKVSKL 514 >UniRef50_B5EM18 Type III restriction protein res subunit n=7 Tax=Proteobacteria RepID=B5EM18_ACIF5 Length = 809 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 152/373 (40%), Gaps = 49/373 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 + TLR Q+ A+ A L+H V+ PT GK++V A + LVL H EL Sbjct: 439 VGTLRLDQEAAITAMLSH-----DAGVLCAPTAFGKTVVAAAMIARHGVNTLVLVHRTEL 493 Query: 62 VAQNHAKYQA-LGLEADIFAA-GLKRKESHGKVVFGSVQSVARN--LDAFQGEFSLLIVD 117 + Q + Q+ LG+ + G + +S G++ +QS++R+ ++ + ++VD Sbjct: 494 LKQWQERLQSFLGVSKGVVGTIGGGKAKSTGQIDIAVMQSLSRHGEVNPIVENYGHIVVD 553 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 ECH +G + + IL + +LGLTATP R G + + Sbjct: 554 ECHHVG---AASFDAILKRVKAKY----VLGLTATPIRRD--------------GQQPII 592 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN---RELKKQ 234 F C P+RY P + +P ++ SR+ L EA + R L Sbjct: 593 FMQCG---PIRYTAAKPASAPHDLAVIP--RFFHSRID-----LLPEAGIQEVFRHLAND 642 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVL 292 Q T I + I + V++ EH I L + + L G P ER ++ Sbjct: 643 QARTGAIATAIKNAIVQGRKVLVLTERSEHLDAIRAALGGKVSPLFVLHGRMPKKERALV 702 Query: 293 IENFKA---QRFRYLVNVAVLT-TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 I A R L+ L GFD P +D +A+ P QQ GR R K Sbjct: 703 IAELGALPPHAPRVLLATGKLVGEGFDHPPLDTLALAMPVSWKGTLQQYAGRLHREHATK 762 Query: 349 TDCLILDYAGNPH 361 T ILD+ H Sbjct: 763 THVRILDFIDTGH 775 >UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 Tax=cellular organisms RepID=T1RA_ECOLX Length = 810 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 102/424 (24%), Positives = 186/424 (43%), Gaps = 60/424 (14%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARG----RVLVLAHVKE 60 R YQ +A++ T+ + ++V+ TG GK+ ++ RL + R+L LA Sbjct: 171 RYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADRNI 230 Query: 61 LVAQN-HAKYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE----FSLL 114 LV Q + +Q G + + ++ ++ + AF+ F L+ Sbjct: 231 LVDQTKNNDFQPFGTAMTKVSGRTIDPAYEIHLALYQAITGPEEDQKAFKQVAPDFFDLI 290 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 ++DECHR E+S +++IL + + +GLTATP H + D Sbjct: 291 VIDECHRGSASEDSAWREILDYFSSATQ----IGLTATPKET----------HEVSSTD- 335 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPE--RLDMPVVQYDFSRLQAQS--NG------LFSE 224 F D +Y L+ I+ G+L P + R+D+ V + + Q+ NG ++++ Sbjct: 336 --YFGDPVYVYSLKEGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQTDLNGEVIDDRIYNQ 393 Query: 225 ADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHA----KEIVGLLPAE--- 275 D +R + +R + I+ ++ ++F ++HA + +V L P + Sbjct: 394 KDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRALVNLNPEQVKK 453 Query: 276 -DAAL--ITGDTPGAERDVLIENFKAQRFRYLV---NVAVLTTGFDAPHVDLIAILRPTE 329 D + ITGD + ++NF + Y V ++TTG DA L+ + + + Sbjct: 454 NDKYVMKITGDDEIGK--AQLDNFINPKKPYPVIATTSELMTTGVDAKTCKLVVLDQNIQ 511 Query: 330 SVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEV--GTPKGKSDNVPVQVFCP 385 S++ ++QI+GRG R+ GK ILD+ +L+A E G P+ D P + P Sbjct: 512 SMTKFKQIIGRGTRIDERYGKLWFTILDFK-KATELFADERFDGIPEKVMDTTPEDIADP 570 Query: 386 ACGF 389 F Sbjct: 571 ESDF 574 >UniRef50_B6R0S4 Type III restriction enzyme, res subunit family n=5 Tax=Alphaproteobacteria RepID=B6R0S4_9RHOB Length = 1131 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 117/434 (26%), Positives = 186/434 (42%), Gaps = 95/434 (21%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLAR----GRVLVLAHV 58 +LRPYQ+EA+DA K ++ + TG GK+ IA + RL + R+L L Sbjct: 420 SLRPYQEEAIDAVEKEIAGGKRSVLVAMATGTGKTRTCIALMYRLLKTKRFKRILFLVDR 479 Query: 59 KELVAQ-----NHAKYQALGLEADIF-AAGLKRK--ESHGKVVFGSVQSVARNLDAFQ-- 108 L Q N +++ + I+ AGL +K + ++ +VQS+ ++ + Sbjct: 480 TALGDQTTDALNTTEFEGFYKFSQIYNVAGLDQKLPDDATQIHVATVQSLVARINNTEDP 539 Query: 109 ------GEFSLLIVDECHR---------IGDDE-------ESQYQQILTHLTKVNPHLRL 146 G + +++DE HR G++ ES Y+ +L++ V Sbjct: 540 KERLTPGMYDCIVIDEAHRGYTLDADLKEGEENYRDVSAYESAYRNVLSYFDAVK----- 594 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV 206 +GLTATP L I+ G +R + E ++I H PP+R+ + Sbjct: 595 IGLTATP-ALHTLQIFDCEKPSYSYG-----YRQAVVE---GFLIDH---LPPKRITTAL 642 Query: 207 VQ-------------YDFSRLQAQSNGLFSEADLNRELKK-QQRITPHIISQIM------ 246 + D + + L E +L +L K +R+ ++I+ Sbjct: 643 AEAGITFNGGEDVEIVDRHTGEVTLHNLPDEVELEYDLAKFNRRVYSENFNRIVCQTIAN 702 Query: 247 EFAATRKG-VMIFAATVEHAKEIVGLLPAE----------DAAL-ITGDTPGAERDVLIE 294 E A G +IFAAT HA +IV LL E D + ITG A+ LI+ Sbjct: 703 EIAPDAPGKTLIFAATDTHADDIVRLLKEELREEYGDLHNDMVMKITGSVRDAKG--LIK 760 Query: 295 NFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 F+ +Y+V V +LTTG D P + + +R +S LY Q++GR RL P GK + Sbjct: 761 KFRNDPLPKYVVTVDLLTTGVDIPVLANLVFVRRVKSRILYDQMIGRATRLCPEIGKQNF 820 Query: 352 LILDYAGNPHDLYA 365 I D DLYA Sbjct: 821 RIFDAV----DLYA 830 >UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax=Anaeromyxobacter dehalogenans RepID=B8J8P5_ANAD2 Length = 1033 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 114/404 (28%), Positives = 171/404 (42%), Gaps = 61/404 (15%) Query: 1 MIFTLRPYQ-QEAVDATLNHFRRH--KTPAVIVLPTGAGKSLVIA-----ELARLARGRV 52 F LRPY+ Q A+ L R + ++V TG GK+++ A ++ R R+ Sbjct: 308 FFFDLRPYEYQRAILEKLRVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQVKDGVRPRL 367 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKV--VFGSVQSVAR-NLDAFQG 109 L +AH +E++ Q ++ + L F LK + +F ++QS+ R +L A G Sbjct: 368 LFVAHREEILEQALHAFRNV-LRDHSFGELLKGGSTPASYEHLFATIQSLDRKDLPAALG 426 Query: 110 E--FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGK----GWIYQ 163 + +IVDE H ++ +L L V P + LLGLTATP R GW + Sbjct: 427 RDYWHTVIVDEFHHAA----AKTYGLL--LEAVAPKI-LLGLTATPERADGLDVLGW-FD 478 Query: 164 FHYHGMVR---GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG 220 H +R EK L Y Y + G E ++ YD L G Sbjct: 479 HHVAADIRLWHALEKQLLAPFEY-----YGVADG--VSLEGVEWRRGGYDLGGLDKVYTG 531 Query: 221 LFSEADLNRELKKQQRITPHIISQIMEFAA---TRKGVMIFAATVEHAKEIVGLLPAED- 276 A L ++S++ E T +G + F +V HA+ + Sbjct: 532 NDERARL-------------VVSKLRELHGHPETARG-LGFCVSVAHAEFMARRFTEAGI 577 Query: 277 -AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 + +I G T ERD + +L + G D P VD + +LRPTES +L+ Sbjct: 578 PSLVIHGATDADERDEAPRKLERGEVAFLFTCDLYNEGVDLPFVDTLLLLRPTESATLFL 637 Query: 336 QIVGRGLRLAPGKTDCLILDYAGNPHDLY------APEVGTPKG 373 Q +GRGLRL PGKT L+LD+ G Y G P+G Sbjct: 638 QQLGRGLRLHPGKTQALVLDFIGQQRAEYRFDRKLTAMTGIPRG 681 >UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPL2_9DELT Length = 978 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 91/370 (24%), Positives = 169/370 (45%), Gaps = 44/370 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA++ R ++ TG GK+ + A + + + + L +AH ++++ + Sbjct: 365 QSEALEGLKKLRTRKARSGAVIAATGVGKTYLAAFDFIQSGKDKCLFIAHREDILRKARE 424 Query: 68 KY-QALGLEADIFAAGLKRKESHG-KVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRI 122 + LG E +G + S+G K VF +Q++ R N+ F EF +++DE H Sbjct: 425 SFSHVLGPEGLEIFSGRSKDVSYGSKAVFAMIQTLGRQGNMKRFHPREFDYIVMDEFHHA 484 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL-GKGWIYQFHYHGMVRGDEKALFRDC 181 + Y+++L + P LLGLTATP R+ G+ ++ Y+ E LF+ Sbjct: 485 M---ANTYRKVLDYF---QPDF-LLGLTATPERMDGRDVLWLCDYNIAY---EMRLFQAI 534 Query: 182 IYEL--PLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 EL P +Y H P D++++ A + + +L L R T Sbjct: 535 DKELLAPFQYFAVHD----------PT---DYAQI-AWKRTDYDQEELTMALANDTR-TA 579 Query: 240 HIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAE---DAALITGDTPGAERDVLIE 294 I + + +F + + + F ++V+HA L E +A + GD+ +R+ +I Sbjct: 580 LIANNLKKFLPYQGKIKALAFCSSVDHAHYTANRLTQEHGFEATALVGDSSQEQREKVIA 639 Query: 295 NFKAQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK---T 349 + + + + V + G D P + + +LRPT+S +++ Q +GRGLR K Sbjct: 640 RLEKENDPLKVICCVDIFNEGVDIPSLSHVLLLRPTQSFTVFLQQIGRGLRKVQTKDVNK 699 Query: 350 DCLILDYAGN 359 +++D+ GN Sbjct: 700 HLVVIDFVGN 709 >UniRef50_C4V188 Putative uncharacterized protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V188_9FIRM Length = 760 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 154/363 (42%), Gaps = 50/363 (13%) Query: 27 AVIVLPTGAGKSLVIAE-LARLA---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG 82 ++VLPTG GK+ + L R A + ++L LAH + L+ Q +Q A+I Sbjct: 48 TLVVLPTGGGKTYTASTWLLRHALDKKKKILWLAHRQMLLDQAAESFQKFAYTAEIPHIS 107 Query: 83 LKR------KESHGKVV---------------FGSVQSVARNLDAFQGEFSL-LIVDECH 120 R +H K + G ++AR GE + LIVDE H Sbjct: 108 SFRYRIVSGSSNHDKTINIDPKDDLLIISKDSIGRASNLARLAPWLAGENEIFLIVDEAH 167 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLG---KGWIYQFHYHGMVRGDEKAL 177 Y++++ ++ H++L+GLTATPFR +G + + + G+ G K Sbjct: 168 H---STAKTYRRVIDYVKDKVEHVKLIGLTATPFRTAENEQGLLARIYKDGVSGGRSKKN 224 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSR------LQAQSNGLFSEADLNREL 231 Y++ L+ +I L+ P + ++ + L++ + +L++ + Sbjct: 225 DIGIAYKVDLKELINRQILSHP-HFETYYTDEEYGKDLGLEALESIQHLDTLSPELSQSI 283 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL-----LPAEDAALITGDT-P 285 + I+ ++ A ++FA ++HA + L + AE D Sbjct: 284 AESGPRNKLIVDTYLKKADEYGKTIVFAVNIDHAIALAKLFNKAGIKAEYVVSAIKDMGT 343 Query: 286 GA-----ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 GA E D +E F++ LVNV +LT G D P + + RPT S L Q++GR Sbjct: 344 GATISPKENDSKLEAFRSGDVEVLVNVNILTEGVDLPMTKTVFLARPTVSTILMTQMIGR 403 Query: 341 GLR 343 LR Sbjct: 404 ALR 406 >UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1X3_9MICC Length = 1075 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 97/377 (25%), Positives = 182/377 (48%), Gaps = 51/377 (13%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARL-----ARGRVLVLAHVKE 60 P+Q ++ N + + + V TG GK++ A + RL + ++L +AH KE Sbjct: 323 PHQVRMLEEMQNARSKGRHRNLAVAATGTGKTVFSALDYRRLCEQSGKKLKLLFIAHRKE 382 Query: 61 LVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVA-RNLDAFQGE-FSLLIV 116 ++ Q + + L+ + G K+ E + + VF ++Q+++ L+ + + F ++I+ Sbjct: 383 ILDQARRTFGDVMLKGNFGELLTGGKKPE-YNEAVFATIQTLSGAALENYAPDYFDVIIM 441 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DECH I + + + ++ + P +GLTATP R I ++ G V + Sbjct: 442 DECHHI---KAASWDKVFNYF---EPR-EFIGLTATPEREDGVNIADKYFDGYVATSIR- 493 Query: 177 LFRDCIYE---LPLRYM-IKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 D + + +P +Y I G T R+++ +YD + L+ L+++ + R L Sbjct: 494 -LWDALEDHLLVPFQYFGIADG--TDLRRINVRGGKYDENALE----NLYTKDEAERRL- 545 Query: 233 KQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEI------VGLLPAEDAALITGDT 284 RI I+ ++ E R + F +V+HA+ + VG+ PA+ + G Sbjct: 546 ---RI---IVEELREKVDNPLRMKALGFCVSVKHAEYMAQKFNEVGI-PAD---FLVGTD 595 Query: 285 PGAERDVLIENF--KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 R +++N +A + V + G D P VD + +LRPT+S++L+ Q +GRGL Sbjct: 596 SAERRAEVMKNLADEAHELTTIFTVDLFNEGVDIPSVDTLLMLRPTQSLTLFLQQLGRGL 655 Query: 343 RLAPGKTDCLILDYAGN 359 R AP K+ +LD+ G+ Sbjct: 656 RRAPLKSVLTVLDFVGH 672 >UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID=Q82Z57_ENTFA Length = 964 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 158/355 (44%), Gaps = 48/355 (13%) Query: 25 TPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQAL--GLEADIFAA 81 T +IV TG GK+ + A ++ + RVL + H + ++ + ++ + G + D Sbjct: 242 TKGMIVSATGTGKTYLAAFDVQQFHPKRVLFIVHSELILMKALESFKLILGGKDDDYGVL 301 Query: 82 GLKRKESHGKVVFGSVQSVARNLDAFQGE-----FSLLIVDECHRIGDDEESQYQQILTH 136 K K +FG++Q+V+++ +Q F +++DE H+ G + + Sbjct: 302 SGNSKNFDAKYLFGTIQTVSKS--EYQERLGKEAFDYILIDEVHKAGA------KSYIKA 353 Query: 137 LTKVNPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIYELPLRYMIKHGY 195 + NP LLG+TATP R I++ F Y + YE+ L+ ++ Sbjct: 354 IEFFNPKF-LLGMTATPERTDNFNIFELFDY-------------NVAYEIRLQAALEAEL 399 Query: 196 LTPPERLDMPVVQYDFSRLQAQSNG--LFSEADLNRELKKQQRITPHIISQIMEFAATRK 253 L P Y F + +G + DL R L+K++ +I +I + + Sbjct: 400 LCPF---------YYFGVTDYEKDGEIIDETTDLKRLLQKER--VDFLIKKINYYGYSGD 448 Query: 254 GV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAV 309 ++F + + A+++ + +A ++GD +R+ I+ Y+ V + Sbjct: 449 SPRGLVFCSRKDEARQLAEMFNDRGIPSAYLSGDHNFDKREKEIKRLDTGEIHYIFTVDI 508 Query: 310 LTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 G D P V+ + +LR T+S ++ Q +GRGLR P K ++D+ GN + Y Sbjct: 509 FNEGIDIPKVNQVIMLRNTQSSIIFIQQLGRGLRKDPSKEFVTVIDFIGNYKNNY 563 >UniRef50_A6FSI5 Helicase n=2 Tax=Roseobacter sp. AzwK-3b RepID=A6FSI5_9RHOB Length = 525 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 100/375 (26%), Positives = 154/375 (41%), Gaps = 56/375 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVKEL 61 LR YQ +A++A + RR ++ TGAGK+L A + R A R L + L Sbjct: 15 LRDYQAQAIEALRDGIRRKLRRQILCATTGAGKTLTSAHMLREAAERGSYTLFIVDRLAL 74 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 V Q A + G+ + R V S Q++AR + + L+IVDECH Sbjct: 75 VDQTSAVFDEYGIPHGVVQGDHPRWAPRENVQVCSAQTLARR--SLPRDPDLIIVDECHV 132 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 + Y+ + N ++GLTATPF G G Y G+V Sbjct: 133 L-------YKNT-REFIEANSKAVVIGLTATPFTKGIG----KQYDGIVN---------- 170 Query: 182 IYELPLRYMIKHGYL--------TPPERLDMPVVQY-DFSRLQAQSNGLFSEADLNRELK 232 +P R +I+ +L PE + Y +FS A S G+ D+ E + Sbjct: 171 --VIPTRQLIEQEHLIEPTIYVAKSPEDAAFGLNSYGEFSDEGATSAGIEIIGDVVSEWE 228 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGAER 289 ++ E ++F+ TVEH +++ A + D E+ Sbjct: 229 ----------AKTHEHFGGPVKTIVFSPTVEHGRKLCEAFAAAGYNFQQVSYMDRTDEEQ 278 Query: 290 DVLIENFKA--QRFRYLVNVAVLTTGFDAPHVDLIAILRP-TESVSLYQQIVGRGLRL-- 344 I F+ + LV+ VLT GFD P V + +P +S+S + Q +GR +R Sbjct: 279 REKIGKFRRPDSTIQGLVSCGVLTRGFDVPEVRIGISCKPYRKSLSSHMQEMGRVMRTHA 338 Query: 345 APGKTDCLILDYAGN 359 GK L LD++GN Sbjct: 339 ESGKDKALWLDHSGN 353 >UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRX7_FIBSS Length = 781 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 94/405 (23%), Positives = 163/405 (40%), Gaps = 62/405 (15%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--------------RLARGR 51 R YQ+ AV+ ++ R + ++ L TG GK+ + ++ RL R Sbjct: 153 RYYQEIAVNNVMDAISRKQDRVLLTLATGTGKTYIAFQICWKIFKAHWNVDGTERLPR-- 210 Query: 52 VLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-----KVVFGSVQSVARNLDA 106 +L LA L Q + A +S G + F Q++ +L+ Sbjct: 211 ILFLADRNILSNQALNDFGQFDENAMCRITPESIAKSKGVPKGPSIYFSIFQTMMTSLNG 270 Query: 107 -FQGE------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 F E F L+I+DECHR ++ES+++ IL + + LGLTATP + Sbjct: 271 KFVYENYPEDFFDLVIIDECHRGAANDESRWRDILDYFQRA----YHLGLTATPKKNENA 326 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP------PERLDMPVV--QYDF 211 Y++ F +Y L+ I+ G+LTP +D + + D Sbjct: 327 NTYEY-------------FGKPVYVYSLKQGIEDGFLTPYRVRISSSNIDNYIYDPEDDV 373 Query: 212 SRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL 271 + N +++E D K + + + ++ + ++F AT HA + L Sbjct: 374 ESGEIDPNKIYTETDFYHGNIKIRERDEFRVEEFLKQIDPDEKTIVFGATQAHAAILRDL 433 Query: 272 L------PAEDAALITGDTPGAERDVLIENFKAQRF---RYLVNVAVLTTGFDAPHVDLI 322 + P + G + + ++ F+ L L+TG DA +V I Sbjct: 434 INQHSRKPNVNYCKRVTSDDGDKGEADLKTFQDNEKLLPTILTTSQKLSTGVDAKNVRNI 493 Query: 323 AILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPE 367 ++RP ++ ++QI+GRG RL GK I D+ G + PE Sbjct: 494 VLMRPVNNIIEFKQIIGRGTRLFDGKYFFTIYDFVGASKNFSDPE 538 >UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIT3_KYTSD Length = 1031 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 101/381 (26%), Positives = 166/381 (43%), Gaps = 58/381 (15%) Query: 7 PYQQ---EAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARG-----RVLVLAH 57 P+QQ +A++A RH+ ++V TG GK++V A + RL R+L +AH Sbjct: 313 PFQQVMLDALEAERVEHDRHRN--LLVAATGTGKTVVAAFDYKRLCEATNTPRRLLFVAH 370 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKES--HGKVVFGSVQSV-ARNLDAF-QGEFSL 113 E++ Q Y+ + L F L R E + VF +VQS+ A L + F + Sbjct: 371 RWEILVQARRTYREI-LGDGTFGEMLGRGEEPRRWEHVFATVQSLTAERLGQLPRDHFDV 429 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE H + + Y+++LT L LLGLTATP R + Q + G Sbjct: 430 VVIDEFHHA---QAATYRRLLTALQPAE----LLGLTATPERADGVDVRQEFFGGR---- 478 Query: 174 EKALFRDCIYELPLRYMIKHGYLTP------PERLDMPVV-----QYDFSRLQAQSNGLF 222 +EL L + G LTP + D+ V +YD + L++ G Sbjct: 479 -------AAHELRLWDALSEGLLTPFHYFGVHDNTDLSAVAFTRGRYDAATLESLYTGND 531 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALI 280 + L + + + + P + I F V+HA+ + A + Sbjct: 532 ARVLLVLKAVRDKVLDPRQMRAIG-----------FCVGVQHAQFMARKFTEAGIPARAV 580 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 TG++ ER + ++ ++ + + G D P VD + LRPTES +++ Q +GR Sbjct: 581 TGESNDEERSSVRQDLHHRKINVVFTADLYNEGVDLPEVDTVLFLRPTESSTIFLQQLGR 640 Query: 341 GLRLAPGKTDCLILDYAGNPH 361 GLR K LD+ G+ H Sbjct: 641 GLRRHHDKAVLTALDFVGHQH 661 >UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Clostridiales RepID=C7GA84_9FIRM Length = 993 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 96/368 (26%), Positives = 157/368 (42%), Gaps = 64/368 (17%) Query: 27 AVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGL-- 83 A+++ TG GK+ A R L RVL L H +L Q Y+ + A+ + GL Sbjct: 246 ALLISATGTGKTYASAFAMRELGFRRVLFLVHRGQLARQTRKSYEKVF--ANTVSMGLVG 303 Query: 84 -KRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTK 139 E VF +VQ++ R+ L + F +++DE H + D Y++I+ H T Sbjct: 304 AGYHEYEADYVFATVQTLNRDEHLLQYAKDAFDCIVLDEAHHVPAD---TYRKIMDHFT- 359 Query: 140 VNPHLRLLGLTATPFRL-----GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHG 194 P L LG+TATP + G+ F+Y YE+ L+ ++ Sbjct: 360 --PKL-WLGMTATPDKRDDNVEGRNVYEIFNYQ-------------IAYEIRLQQAMEEN 403 Query: 195 YLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG 254 L P + D S + + + D N L +R+ HI++Q + + Sbjct: 404 LLCPFHYFGIT----DLSMIGDEE----AARDFNM-LTSDERVR-HIVNQADYYGYSGDK 453 Query: 255 V--MIFAATVEHAKEIVG-----LLPAEDAAL----ITGDTPGAERDVLIENFKA----- 298 V +IF + ++ +E+ + PA + G ER E Sbjct: 454 VKGLIFCSNIKETEELSAKFNQIINPATGKNFRTVALNGSASEQERQDAFERLAMNEDES 513 Query: 299 ----QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 Q Y+ +V +L G D V+ + +LRPT+S ++ Q +GRGLR A GK +IL Sbjct: 514 SEDRQPLDYIFSVEILNEGVDIVEVNQVIMLRPTQSPIVFIQQLGRGLRKASGKEYVVIL 573 Query: 355 DYAGNPHD 362 D+ GN ++ Sbjct: 574 DFIGNYNN 581 >UniRef50_C4G600 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G600_ABIDE Length = 752 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 90/383 (23%), Positives = 162/383 (42%), Gaps = 69/383 (18%) Query: 34 GAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGL---KRKESH 89 G GK+ A + G+ L + H +EL+A+ AK L + + GL KE Sbjct: 5 GTGKTYASAFAMKNEQPGKALFIVH-RELIAK-QAKSSYLRVFGNSKKLGLLSGSSKEYD 62 Query: 90 GKVVFGSVQSVARN--LDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL 146 ++F ++ ++A+ +D ++ EF + +DE HR G + Y++I+ + NP Sbjct: 63 ADILFATMSTMAKADIMDKYRPDEFEWICIDEVHRAGAE---SYRKIMDYF---NPKF-W 115 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV 206 G+TA+P R I++ H + YE+ L++ +K L P + Sbjct: 116 FGMTASPERTDGFDIFKLFDHNIA------------YEIRLQHALKEDLLCPFHYFGITD 163 Query: 207 VQYDFSRLQAQSN-----GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAAT 261 ++ D + S+ L S+ ++ LK+ S+ ++ R ++F + Sbjct: 164 IEIDGEPINDNSDVRAFSRLVSDIRVDHILKQ---------SEYYGYSGDRVKGLVFCSN 214 Query: 262 VEHAKEIVGLLPAED--AALITGDTPGAERDVLIE----------------NFKAQ---- 299 E AKE+ A++TG+ +R+ IE N K Sbjct: 215 KEEAKELSKKFNQRGYYTAVLTGENTEKQRESCIELLVKDISDDEIEEHNTNIKNNIPVE 274 Query: 300 -----RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 Y+ + + G D P ++ + +LRPTES ++ Q +GRGLR A K +++ Sbjct: 275 CTQMPYLDYIFTIDIFNEGVDIPEINQVLMLRPTESPIVFVQQLGRGLRKANYKEYVVVI 334 Query: 355 DYAGNPHDLYAPEVGTPKGKSDN 377 D+ GN + Y + KS N Sbjct: 335 DFIGNYQNNYMIPIALSGDKSYN 357 >UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSE4_9CORY Length = 1195 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 121/433 (27%), Positives = 172/433 (39%), Gaps = 92/433 (21%) Query: 6 RPYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 R YQ E + F + A++V+ TG GK+ V LA+L RG RVL LA K Sbjct: 420 RDYQLEMIRNVTEAFDSEGRRRALLVMATGTGKTRVAMALAKLLRGAQWVGRVLFLADRK 479 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG---------E 110 LVAQ ++ E L+ + G+V F + Q++ L + G + Sbjct: 480 ALVAQACDAFKISYPECAPVNL-LEDADEVGEVYFSTYQTMM-GLISDDGTSEAKFRPFD 537 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ-----FH 165 F L+I+DE HR ++++IL + ++GLTATP K I+ FH Sbjct: 538 FDLIIIDEAHR---SIYYRFRRILEYFDSY-----VVGLTATP----KADIHHDTFALFH 585 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV-----------------VQ 208 G R+ L IK GYL PP V Sbjct: 586 IDG----------REPTGNYSLEAAIKDGYLVPPVPFKQDSLFLRAGVSYDDLSPEQKVA 635 Query: 209 YDFSRLQAQSNG-------LFSEADLNRELKKQQRITPHIISQIMEFAATRKG-----VM 256 +D +G S ++NR L + I ++ ++E G + Sbjct: 636 WDNQDWGTDEDGDALPPPDGVSPGEINRILYNRDTIR-KVVGNLIECGHKVDGDRLGETI 694 Query: 257 IFAATVEHA----KEIVGLLPA---EDAALITGDTPGAERDVLIENFKA--QRFRYLVNV 307 IFA T HA +EI PA + AA+IT T AE I+ FK R ++V Sbjct: 695 IFARTQHHADLILEEINKHFPAFGGDGAAVITHSTRYAE--AAIKRFKKIDGDLRIAISV 752 Query: 308 AVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNP 360 +L TG D P V + +P S + + Q+VGRG RL P K + I DY GN Sbjct: 753 DMLDTGIDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLCPNLFGPGRDKENFYIFDYCGNV 812 Query: 361 HDLYAPEVGTPKG 373 V P G Sbjct: 813 EMFSGKPVTDPAG 825 >UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I028_9BACT Length = 1039 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 103/374 (27%), Positives = 169/374 (45%), Gaps = 49/374 (13%) Query: 7 PYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAEL------ARLARGRVLVLAHVK 59 P+Q+E ++ H +T ++V TG GK+ VIA L ++ R R+L +AH + Sbjct: 304 PFQEEILEKLAVEREVHGRTKNLVVAATGTGKT-VIAALDFRRLREKMPRARLLFVAHRR 362 Query: 60 ELVAQNHAKYQ-ALG---LEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGEFSL 113 E++ Q+ ++ ALG + G H +F SVQ +A LD+ ++ Sbjct: 363 EILEQSLLTFRRALGDPNFGRILLPDGPPGGSEH---LFVSVQLLASRSLLDSLSPDYFD 419 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 ++V + G E Y+++L+ L+ P + LLGLTATP R G + + G + Sbjct: 420 VVVVDEVHHG--EAPTYRRLLSRLS---PRI-LLGLTATPER-SDGLDIRSWFDGRIAA- 471 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMP-VVQYDFSRLQAQSNGLFSEADLNRELK 232 E+ L I G L P + V Y R + G ++ +DL+ + Sbjct: 472 ----------EIRLPEAIGRGLLVPFHYFGVSDSVDYRSVRWE---RGRYNLSDLDNVIT 518 Query: 233 KQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGL-----LPAEDAALITGDTP 285 I+ + + + + + F +V HA + + LP+E AL G TP Sbjct: 519 GDDLRAGIILKAVSNYLSDPRKARGLGFCVSVNHAIRMAEIFNRAGLPSE--ALHAG-TP 575 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 R+ + +L V + G D P VD + LRPTES++++ Q +GRGLRL Sbjct: 576 SDRRERVRSRLSNGELSFLFTVDLFNEGVDIPEVDTVLFLRPTESLTVFLQQLGRGLRLF 635 Query: 346 PGKTDCLILDYAGN 359 PGK +LD+ G Sbjct: 636 PGKEVLTVLDFIGQ 649 >UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALE7_9BACT Length = 756 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 107/386 (27%), Positives = 160/386 (41%), Gaps = 56/386 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVK 59 +RPYQ+EA+ A K +I LPTG GK+ L+ L RL + R+L L Sbjct: 171 VRPYQKEAMQALDRTIELGKRRFLIELPTGTGKTDLISLYLKRLIQAGYAERILFLVDRD 230 Query: 60 ELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +L Q Q L + +G+ R+E V + R + G F +++ D Sbjct: 231 QLARQAIEAIQDLLPVHSSYWLKSGMVRQEKQITVCLLQTM-IGRVAEFTSGYFDVVVAD 289 Query: 118 ECHRIGDDEESQYQQILTHLTKVNP-HLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 ECHR S Y T LT+ + H+ G+TATP + + F+ D Sbjct: 290 ECHR------SIYGAWQTALTRFDALHI---GMTATPAMYIERNTFDFYQCQDETPD--- 337 Query: 177 LFRDCIYELPLRYMIKHGYLTP-----------PERLDMPVVQYDFSRLQAQSNGLFSEA 225 Y ++ + GYL P E D YD + + + ++ Sbjct: 338 ------YSYSIQEAFRDGYLVPYKFATGITTILSEGADEGEEHYDPAEFERK----WTNK 387 Query: 226 DLNRELKKQ-QRITPHIISQIMEFAATRKG-VMIFAATVEHAKEIVGLL-------PAED 276 NR + K+ RI+ I + T G ++FA T HA + L Sbjct: 388 STNRLMMKEFDRISWQIYKDLAPGQRTGPGKSVVFAITKHHAARLARYLNELHPEAKGRY 447 Query: 277 AALITGDTPGAERDVLIENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 A +IT D P A + LI FK + + + V+V +L TGFD + + + R S LYQ Sbjct: 448 AEVITSDIPDA--NDLIRRFKREEYPQVAVSVGMLDTGFDCREILHLVLCRRVRSPILYQ 505 Query: 336 QIVGRGLRLAP--GKTDCLILDYAGN 359 Q+ GRG R A GK +I D+ N Sbjct: 506 QMRGRGTRTADHIGKNKFIIYDFFKN 531 >UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=B8CZR6_HALOH Length = 770 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 102/402 (25%), Positives = 171/402 (42%), Gaps = 73/402 (18%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RL----ARGRVLVLAHV 58 T R YQ+ A++ + + + ++V+ TG GK+ ++ RL + R+L LA Sbjct: 159 TPRYYQRVAINRAVEAIAKGQKRILLVMATGTGKTFTAFQIIHRLWKAGKKKRILFLADR 218 Query: 59 KELVAQN-HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS----- 112 LV Q + G D + SH ++ ++ + +Q F Sbjct: 219 NILVDQTITGDFSPFG---DKMIKIQRGNVSHAHEIYLALYQSMTGPEEWQKTFEEYSPD 275 Query: 113 ---LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L+++DECHR S ++ +L + + LGLTATP Sbjct: 276 FFDLVVIDECHRGSARANSAWRVVLEYFDQATH----LGLTATP-------------KED 318 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPE--RLDMPVVQYDFSRLQAQSNGL------ 221 + F + IY L+ I+ G+L P + R+ + F ++ Q++ Sbjct: 319 ADVSTQGYFGEPIYTYSLKQGIEDGFLAPYKVVRMGLDKDLMGFRPIKGQTDKYGRVMED 378 Query: 222 --FSEADLNRELKKQQR-------ITPHIISQIME-FAATRKGVMIFAATVEHAKEIVGL 271 + D +REL ++R IT ++ ++ + FA T ++F +EHA+ + Sbjct: 379 REYYVNDFDRELILEKRHELVAKEITRYLKEELQDRFAKT----IVFCQDIEHAENMRQA 434 Query: 272 LPAEDAAL----------ITGDTPGAERDVLIENFKAQRFRYLV---NVAVLTTGFDAPH 318 L E+A L ITGD P A+ + ++NF Y V ++TTG DA Sbjct: 435 LVNENADLVKQNYKYVMRITGDNPEAK--IQLDNFIEPSETYPVIATTSKLMTTGVDAQT 492 Query: 319 VDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAG 358 LI + S+S ++QI+GRG RL P GK ILD+ G Sbjct: 493 CKLIVLDMTINSMSEFKQIIGRGTRLRPDYGKYYFTILDFRG 534 >UniRef50_UPI000045D920 COG1061: DNA or RNA helicases of superfamily II n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI000045D920 Length = 529 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 95/375 (25%), Positives = 162/375 (43%), Gaps = 51/375 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQQ + + + T ++ L TGAGK+ +IA+LA + V+V H L+ Q Sbjct: 3 LRAYQQNIFEQLI----KSSTNDLVQLDTGAGKTPIIAKLAEYYQQAVIV-CHRNILIKQ 57 Query: 65 NHAKYQALGLEADIFAAGLKRK--ESHGKVVFG------SVQSVARNLDAFQGEFS---- 112 K A GL I A+ +K S+ VFG V ++D + +F Sbjct: 58 ASEKLAACGLHHRILASREIKKIAASNNIEVFGKHFINPKSHIVLISIDTWNSQFKRSSL 117 Query: 113 --------LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQF 164 ++++DE H EE+++ + L + R +G +ATP R G Sbjct: 118 KFDFSKRYIVLIDESHHFA--EENKWDLLQNTL-----NARCIGFSATPIR-NDGMPLLK 169 Query: 165 HYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSE 224 ++G ++ + + E +I GYL QY + + + SE Sbjct: 170 VFNGFF---DRIVQAEGYKENGTERLIAEGYLA----------QYQ-AFVAMVGDKSLSE 215 Query: 225 ADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE-DAALITGD 283 + + +LK++ + I M+F ++ ++I + E L AA+I + Sbjct: 216 SVV--DLKQEMSVAMPPIRAYMQFGENKQAILIVPRILNAKTECEALNKLNIPAAVIHSE 273 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 P E +++ FK + + LV V +++ GFD P D++ + R S LY+Q+ GR LR Sbjct: 274 LPQYEIQRILQAFKQKNIKILVAVDMISEGFDVPDADILLLYRKIRSFGLYRQVCGRVLR 333 Query: 344 LAPGKTDCLILDYAG 358 GK I+D G Sbjct: 334 PRQGKM-AKIIDLTG 347 >UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZV1_XYLCX Length = 980 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 160/350 (45%), Gaps = 46/350 (13%) Query: 27 AVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHAKYQAL--GLEADIFAAGL 83 A+++ TG GK+++ A R R +L + H ++++ + +Y+ + G +D Sbjct: 257 AIVISATGTGKTILSALDVRAVNPRRLLFVVHREQILDRTIQEYRKVLGGDASDYGKLTG 316 Query: 84 KRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKV 140 K+ + +F +VQ++A+ L F + F +IVDE HR G +++++ H V Sbjct: 317 SSKDFAARYLFATVQTLAQPDVLARFPADVFDYVIVDEAHRGG---SPTHRRVIGHFDPV 373 Query: 141 NPHLRLLGLTATPFRLGKGWIYQ-FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPP 199 +LG+TATP R +++ FHY + YE+ L + LTP Sbjct: 374 F----MLGMTATPERTDGFNVFELFHY-------------NVPYEIRLNRALDEDMLTPF 416 Query: 200 ERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFA--ATRKGVMI 257 + + + S+ DL L QR++ H+I + +A T +I Sbjct: 417 HYYGITDATF----DDDTTVDALSDLDL---LVSPQRVS-HLIWALETYAQAGTAPRGLI 468 Query: 258 FAATVEHAKEIVGLL--------PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAV 309 F + + A+ + +L P A+L TG R+ +E ++ Y++ V V Sbjct: 469 FCSRTQEARRLSDVLNRSLLRGRPLRTASL-TGVDSIEHRERTVEQLESGELDYILTVDV 527 Query: 310 LTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 G D P ++ + +LR T+S ++ Q +GRGLR K ++LD+ GN Sbjct: 528 FNEGVDIPSINQVIMLRQTQSAIVFVQQLGRGLRKCDQKEYLVVLDFIGN 577 >UniRef50_Q8EUU6 Type I restriction-modification system R subunit n=1 Tax=Mycoplasma penetrans RepID=Q8EUU6_MYCPE Length = 622 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 99/432 (22%), Positives = 183/432 (42%), Gaps = 65/432 (15%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARG----RVLVLAHVKE 60 R YQ+ A++ T+ + K ++VL TG GK+ V ++ RL + ++L LA Sbjct: 8 RYYQRVAINKTVEEVAKGKNKLLLVLATGTGKTYVAFQIIWRLWKSGIKKKILYLADRNI 67 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR-----NLD----AFQGE- 110 L+ Q A + ++ + ++ ++ Q ++ NL+ +F+ + Sbjct: 68 LIDQTIAG-DFKPFKNSLYKIEKRNMDTSYQIYLSLYQQLSESNEEDNLELLKRSFKPDF 126 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+IVDECHR +S +++IL + +G+TATP + I Y G Sbjct: 127 FDLIIVDECHRGSARNDSNWRKILEYFDSATK----IGMTATPKETSE--ISNIDYFG-- 178 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPE--RLDMPVVQYDF----SRLQAQSN----G 220 + IY L+ I GYL P E R + + + + +L + N Sbjct: 179 ---------EPIYTYSLKDGINDGYLAPFEVIRFNTNIDSFGYRPEKGKLDVEGNLVEDR 229 Query: 221 LFSEADLNRE--LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAA 278 ++ D+N + ++++ ++ I+ ++ K ++F +EHA+ + L E++ Sbjct: 230 FYNPRDINTKIVIEERDKLVAKCITDFLKKTDRNKKTIVFCVDIEHAERMRRALANENSD 289 Query: 279 L----------ITGDTPGAERDVLIENFKAQRFRY---LVNVAVLTTGFDAPHVDLIAIL 325 L ITGD + + ENF Y + +LTTG + +I + Sbjct: 290 LCAKDSRYVMRITGDESTGKGES--ENFCDDDLDYPTIVTTSKLLTTGVNCRTCKVIVLD 347 Query: 326 RP--TESVSLYQQIVGRGLRLAPGKTDCL--ILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 ++ ++QI+GRG R+ K ILD+ G + P+ KS + ++ Sbjct: 348 NNFGENGMTEFKQIIGRGTRIQEDKNKLYFTILDFNGASRFFADEKFNGPEIKSLDYDLK 407 Query: 382 VFCPACGFANTF 393 F GF F Sbjct: 408 DFT-GDGFTYNF 418 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobac... 887 0.0 UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax... 712 0.0 UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax... 702 0.0 UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Ta... 679 0.0 UniRef50_B5JP68 Type III restriction enzyme, res subunit family ... 674 0.0 UniRef50_Q5G7M7 Putative helicase n=1 Tax=Listonella phage phiHS... 427 e-118 UniRef50_A3JKG0 Putative ATP-dependent helicase n=1 Tax=Marinoba... 360 1e-97 UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax... 356 1e-96 UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vade... 338 4e-91 UniRef50_A0LBR5 Type III restriction enzyme, res subunit n=3 Tax... 337 7e-91 UniRef50_UPI0001911E38 putative helicase n=1 Tax=Salmonella ente... 337 7e-91 UniRef50_B5ZFR8 Type III restriction protein res subunit n=1 Tax... 326 1e-87 UniRef50_D1WDT8 51.5 kDa protein n=5 Tax=Lactobacillus RepID=D1W... 323 1e-86 UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 317 6e-85 UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q... 315 3e-84 UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax... 315 3e-84 UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida... 315 4e-84 UniRef50_B1M5E1 Helicase domain protein n=8 Tax=Alphaproteobacte... 314 5e-84 UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5... 313 9e-84 UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida... 312 2e-83 UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax... 311 4e-83 UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida... 310 8e-83 UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1... 309 2e-82 UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM... 308 3e-82 UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talarom... 308 5e-82 UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii Re... 307 9e-82 UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepI... 307 1e-81 UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax... 306 1e-81 UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax... 306 1e-81 UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax... 306 2e-81 UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cel... 304 8e-81 UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicil... 304 8e-81 UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax... 303 1e-80 UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA ... 303 1e-80 UniRef50_Q6J7X8 Pas53 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q... 303 1e-80 UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Sac... 302 3e-80 UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisi... 300 9e-80 UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax... 300 1e-79 UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6... 300 1e-79 UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax... 298 3e-79 UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax... 298 4e-79 UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase ir... 298 4e-79 UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pe... 298 5e-79 UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax... 297 7e-79 UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6... 297 8e-79 UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=... 297 8e-79 UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilag... 297 1e-78 UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax... 297 1e-78 UniRef50_B1MAA8 Type III restriction protein res subunit n=1 Tax... 296 2e-78 UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococ... 295 3e-78 UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax... 294 5e-78 UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax... 294 6e-78 UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax... 293 1e-77 UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax... 293 1e-77 UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax... 292 2e-77 UniRef50_B8I140 Type III restriction protein res subunit n=16 Ta... 292 3e-77 UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococ... 292 3e-77 UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Prop... 292 3e-77 UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobact... 292 3e-77 UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum... 292 3e-77 UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=L... 291 4e-77 UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax... 291 5e-77 UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B... 291 5e-77 UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum '... 291 7e-77 UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 290 9e-77 UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=... 290 9e-77 UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IP... 289 2e-76 UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax... 289 2e-76 UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3... 289 2e-76 UniRef50_A9DEN3 NTP dependent helicase n=1 Tax=Yersinia phage PY... 289 2e-76 UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Loddero... 289 2e-76 UniRef50_A6LX80 Type III restriction protein, res subunit n=15 T... 289 3e-76 UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta Rep... 288 4e-76 UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collins... 287 7e-76 UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=L... 287 9e-76 UniRef50_A0L703 Type III restriction enzyme, res subunit n=13 Ta... 287 1e-75 UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax... 287 1e-75 UniRef50_Q856Y4 Gp50 n=7 Tax=unclassified Siphoviridae RepID=Q85... 286 1e-75 UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type ... 286 2e-75 UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus aci... 286 2e-75 UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 286 2e-75 UniRef50_B1XQS3 Putative uncharacterized protein n=1 Tax=Synecho... 285 2e-75 UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B... 285 3e-75 UniRef50_B9CV28 Phage deah-family helicase n=1 Tax=Staphylococcu... 285 3e-75 UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis R... 285 3e-75 UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Gro... 285 4e-75 UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO 284 6e-75 UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax... 284 7e-75 UniRef50_C4L054 Type III restriction protein res subunit n=70 Ta... 284 8e-75 UniRef50_Q47CK6 Helicase, C-terminal:Type III restriction enzyme... 284 8e-75 UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malasse... 284 8e-75 UniRef50_UPI0001545E85 hypothetical protein ORF029 n=1 Tax=Pseud... 283 1e-74 UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax... 283 1e-74 UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria Rep... 283 1e-74 UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleo... 283 2e-74 UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Ba... 283 2e-74 UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobaci... 283 2e-74 UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=P... 281 4e-74 UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax... 281 4e-74 UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax... 281 4e-74 UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM... 281 5e-74 UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae AT... 281 6e-74 UniRef50_Q3V5F4 Gp41, helicase n=1 Tax=Corynebacterium phage BFK... 281 6e-74 UniRef50_C5UXP6 Type III restriction enzyme, res subunit n=1 Tax... 281 7e-74 UniRef50_Q9T1H9 Putative DEAH-family helicase n=1 Tax=Lactobacil... 281 7e-74 UniRef50_C2FEA8 Helicase n=4 Tax=Bacilli RepID=C2FEA8_LACPA 281 8e-74 UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bac... 280 9e-74 UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax... 280 9e-74 UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia ... 280 9e-74 UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filob... 280 1e-73 UniRef50_Q6VSX2 Putative helicase n=3 Tax=Vibrio phage phi16 Rep... 280 1e-73 UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 ... 280 1e-73 UniRef50_C2KJC2 Helicase n=1 Tax=Leuconostoc mesenteroides subsp... 279 1e-73 UniRef50_B5U5V9 Gp54 n=8 Tax=unclassified Siphoviridae RepID=B5U... 279 2e-73 UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio ... 279 2e-73 UniRef50_B7XGM0 Helicase n=3 Tax=Pseudomonas RepID=B7XGM0_PSEPU 279 2e-73 UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like prot... 279 2e-73 UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasma... 279 2e-73 UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax... 278 4e-73 UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax... 278 4e-73 UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax... 278 5e-73 UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID... 278 6e-73 UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=P... 277 7e-73 UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebact... 277 1e-72 UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepI... 276 1e-72 UniRef50_A5PJ16 HelA n=4 Tax=Siphoviridae RepID=A5PJ16_9CAUD 276 2e-72 UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodi... 276 2e-72 UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=... 275 2e-72 UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma l... 275 3e-72 UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobac... 275 3e-72 UniRef50_Q597S9 Putative helicase n=1 Tax=Lactobacillus phage ph... 275 3e-72 UniRef50_C1I4L0 Superfamily II DNA/RNA helicase n=6 Tax=Clostrid... 275 4e-72 UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14J... 275 4e-72 UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax... 274 7e-72 UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Ta... 274 8e-72 UniRef50_A3IZE6 DEAD/DEAH box helicase-like protein n=2 Tax=Cyan... 274 9e-72 UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax... 273 2e-71 UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae... 273 2e-71 UniRef50_A5A3T1 BcepGomrgp42 n=1 Tax=Burkholderia phage BcepGomr... 273 2e-71 UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=D... 273 2e-71 UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=... 272 2e-71 UniRef50_B4UTX6 p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_B... 272 2e-71 UniRef50_Q8HAK4 Gp58 n=5 Tax=Caudovirales RepID=Q8HAK4_9CAUD 271 4e-71 UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemol... 271 4e-71 UniRef50_D1VXH8 DEAD/DEAH box helicase n=13 Tax=Bacteroidales Re... 271 5e-71 UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Ta... 271 5e-71 UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=... 271 6e-71 UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococ... 271 8e-71 UniRef50_B2GAW8 Phage helicase n=5 Tax=root RepID=B2GAW8_LACF3 270 9e-71 UniRef50_C3R6R4 DEAD/DEAH box helicase n=33 Tax=Bacteroides RepI... 270 1e-70 UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax... 270 1e-70 UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax... 270 1e-70 UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=... 269 2e-70 UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordari... 269 3e-70 UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax... 269 3e-70 UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax... 268 6e-70 UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccal... 268 6e-70 UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=P... 267 7e-70 UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 T... 267 8e-70 UniRef50_B4WJ71 Type III restriction enzyme, res subunit family ... 266 1e-69 UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax... 266 2e-69 UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=C... 266 2e-69 UniRef50_C4WDM0 Phage DNA/RNA helicase n=1 Tax=Staphylococcus wa... 266 2e-69 UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax... 266 2e-69 UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1... 265 3e-69 UniRef50_D2RKS9 Type III restriction protein res subunit n=2 Tax... 264 5e-69 UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtm... 264 6e-69 UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11... 264 6e-69 UniRef50_A0Q726 Type I restriction-modification system, subunit ... 264 7e-69 UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49... 264 1e-68 UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=C... 263 1e-68 UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B... 263 1e-68 UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organ... 262 3e-68 UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax... 261 5e-68 UniRef50_A0YZ56 Putative uncharacterized protein n=1 Tax=Lyngbya... 261 6e-68 UniRef50_A6FFB6 Putative uncharacterized protein n=1 Tax=Moritel... 261 7e-68 UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bactero... 260 8e-68 UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothe... 260 9e-68 UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax... 260 1e-67 UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax... 260 1e-67 UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepI... 260 1e-67 UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax... 259 2e-67 UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=F... 259 2e-67 UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=M... 258 3e-67 UniRef50_B2IMB0 Type I restriction-modification system, R subuni... 258 3e-67 UniRef50_B1GS37 Putative ATP-dependent helicase n=1 Tax=Salmonel... 258 4e-67 UniRef50_C5R853 DEAH-family helicase n=1 Tax=Weissella paramesen... 258 4e-67 UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformat... 258 5e-67 UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria Re... 257 8e-67 UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 R... 257 8e-67 UniRef50_C3X1S4 Helicase n=2 Tax=Oxalobacter formigenes HOxBLS R... 256 2e-66 UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=... 256 2e-66 UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax... 256 2e-66 UniRef50_Q7MPU7 Type I site-specific restriction-modification sy... 256 2e-66 UniRef50_B5FA21 Type I restriction-modification system, R subuni... 256 2e-66 UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax... 255 3e-66 UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=... 254 5e-66 UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=C... 254 7e-66 UniRef50_Q6NDX2 Helicase C-terminal domain n=1 Tax=Leptospira ph... 254 9e-66 UniRef50_B9KN75 ABC-type metal ion transport system ATPase compo... 253 1e-65 UniRef50_Q0AZK4 Type I restriction-modification system R subunit... 253 2e-65 UniRef50_P24125 51.5 kDa protein n=5 Tax=root RepID=V51K_BPL79 252 2e-65 UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0... 252 3e-65 UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 T... 252 4e-65 UniRef50_Q8EUU6 Type I restriction-modification system R subunit... 251 4e-65 UniRef50_Q04L29 Type I restriction-modification system, R subuni... 251 8e-65 UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Acti... 251 8e-65 UniRef50_A0AI00 Complete genome n=11 Tax=root RepID=A0AI00_LISW6 250 9e-65 UniRef50_A6DQ75 Type I restriction-modification system R subunit... 250 1e-64 UniRef50_UPI00016C5789 putative DEAD box family helicase, phage ... 250 1e-64 UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax... 249 2e-64 UniRef50_Q5NWL0 Type I restriction-modification system (Restrict... 249 2e-64 UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=F... 249 3e-64 UniRef50_Q043T1 Type I site-specific restriction-modification sy... 248 4e-64 UniRef50_A6L307 Putative uncharacterized protein n=6 Tax=Bactero... 248 5e-64 UniRef50_B9BQH5 Putative helicase n=2 Tax=Burkholderia multivora... 248 7e-64 UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax... 247 8e-64 UniRef50_C0A3V9 DNA or RNA helicase of superfamily II-like prote... 247 9e-64 UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax... 247 1e-63 UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 T... 246 1e-63 UniRef50_B1VEN8 Type I restriction-modification system, restrict... 246 1e-63 UniRef50_Q2P0A6 Type I restriction-modification system R subunit... 246 1e-63 UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Coryneb... 246 2e-63 UniRef50_B3T0J4 Putative DEAD/DEAH box helicase n=1 Tax=uncultur... 246 2e-63 UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax... 245 4e-63 UniRef50_C9KLJ8 Type I restriction-modification system, R subuni... 245 4e-63 UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospi... 244 6e-63 UniRef50_C0A6N5 DNA/RNA helicase n=1 Tax=Opitutaceae bacterium T... 244 7e-63 UniRef50_A4VH90 Type I restriction-modification system, R subuni... 244 7e-63 UniRef50_C4G600 Putative uncharacterized protein n=1 Tax=Abiotro... 243 1e-62 UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Ta... 243 1e-62 UniRef50_C1GNS0 GPI inositol-deacylase n=2 Tax=Leotiomyceta RepI... 243 1e-62 UniRef50_C4ZF20 Type I restriction-modification system R subunit... 242 2e-62 UniRef50_A6FSI5 Helicase n=2 Tax=Roseobacter sp. AzwK-3b RepID=A... 242 3e-62 UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax... 242 3e-62 UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bactero... 241 4e-62 UniRef50_C6NXH3 Type III restriction protein res subunit n=1 Tax... 241 4e-62 UniRef50_A9BYC8 Helicase domain protein n=1 Tax=Delftia acidovor... 241 5e-62 UniRef50_C4V188 Putative uncharacterized protein n=1 Tax=Selenom... 241 6e-62 UniRef50_B3JH18 Putative uncharacterized protein n=1 Tax=Bactero... 241 6e-62 UniRef50_C7BL24 Putative helicase n=1 Tax=Photorhabdus asymbioti... 241 7e-62 UniRef50_C7GDQ4 Type I restriction-modification system, R subuni... 241 8e-62 UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax... 239 2e-61 UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycopla... 239 2e-61 UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax... 239 2e-61 UniRef50_Q4HNM6 Type I restriction-modification system, R subuni... 239 2e-61 UniRef50_B6R0S4 Type III restriction enzyme, res subunit family ... 239 2e-61 UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax... 239 3e-61 UniRef50_C6VL05 Helicase-like protein:Type III restriction enzym... 239 3e-61 Sequences not found previously or not previously below threshold: UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax... 241 8e-62 >UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobacteria RepID=YEJH_ECOLI Length = 586 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 586/586 (100%), Positives = 586/586 (100%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE Sbjct: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH Sbjct: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD Sbjct: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH Sbjct: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR Sbjct: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP Sbjct: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG Sbjct: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS Sbjct: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA Sbjct: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 Query: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG Sbjct: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 >UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax=Gammaproteobacteria RepID=Q1QZA7_CHRSD Length = 613 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 381/604 (63%), Positives = 450/604 (74%), Gaps = 27/604 (4%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVA 63 +LRPYQ +AVD + HFRR PAV+VLPTG+GKSLVIAELARLARGRVLVLAHV+ELV Sbjct: 8 SLRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIAELARLARGRVLVLAHVRELVE 67 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-----GEFSLLIVDE 118 QNHAKY+A GLEAD+F+AGL RKES +VVFGSVQSV R+L+ F+ G F+LL++DE Sbjct: 68 QNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVIDE 127 Query: 119 CHRIG----------DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 CHRI D S Y Q++ HL + NP L++LGLTATP+RLG+G+IY H+HG Sbjct: 128 CHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRLGQGFIYHRHHHG 187 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM-------PVVQYDFSRLQAQSNGL 221 MVRGD F+DC++E PLR M+K GYL PP R+D +YDFSRL G Sbjct: 188 MVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGRGGG 247 Query: 222 FSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT 281 F EA+LNR ++ R TP II++++E A R+GVMIFAATV HA+EI+G LPA+ AALI Sbjct: 248 FEEAELNRVVQGH-RATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQQAALIV 306 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G TPG ER+ LIE+FKAQR +YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG Sbjct: 307 GATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 366 Query: 342 LRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADG 401 LRLAPGK DCLILDYAGNP DLYAPEVG P+ SD PVQV CPACG AN FWGK DG Sbjct: 367 LRLAPGKQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPVQVECPACGHANLFWGKR--DG 424 Query: 402 TL-IEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDD 460 L IEH+GRRCQG ED DG R QCDFRFRFK C QC AENDIAAR C +CD LVDPDD Sbjct: 425 ELVIEHYGRRCQGLLEDTDGRRRQCDFRFRFKVCDQCGAENDIAARACHQCDERLVDPDD 484 Query: 461 MLKAALRLKDALVLRCSGMSLQHGHDEKG-EWLKITYYDEDGADVSERFRLQTPAQRTAF 519 LKAALRLK+A VLR SGM LQ + +G LK+TY+DEDGA + E F L+T AQR AF Sbjct: 485 KLKAALRLKEAKVLRVSGMQLQAVTNGRGLPRLKVTYHDEDGATLDEWFALETAAQRRAF 544 Query: 520 EQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFR 579 F+R H R PG R + ++A + L+ PDFV+ R G++WQ+R+K+FDY GR+R Sbjct: 545 TLAFLRHHLRAPGSDWRPDSPEAVIAGERRLKAPDFVIGRKVGRHWQIRDKLFDYAGRYR 604 Query: 580 LAHE 583 A + Sbjct: 605 KADD 608 >UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax=Gammaproteobacteria RepID=A6VYC7_MARMS Length = 586 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 313/584 (53%), Positives = 410/584 (70%), Gaps = 5/584 (0%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 F LR YQ +AV+A+L+HFR PAVIVLPTGAGKSLVIAEL+RLA+GRV+ LAHVKELV Sbjct: 5 FQLRDYQIQAVEASLDHFRSSNDPAVIVLPTGAGKSLVIAELSRLAKGRVVCLAHVKELV 64 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QNHAK+ A G A IF+AGL +K S K F S+QS++ +L F SL+I+DECHR+ Sbjct: 65 EQNHAKFLATGSSAGIFSAGLSQKTSTEKTTFASIQSLSASLVDFNEPVSLIIIDECHRV 124 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G +E QY + + H +NP +++LGLTATP+RLG GWIYQ HYHG R +LF+ CI Sbjct: 125 GMEESGQYNKTIEHFRALNPKVKILGLTATPYRLGSGWIYQNHYHGYTRTCTNSLFKKCI 184 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD--LNRELKKQQRITPH 240 +ELPL++M+K GYLTPP D + YDFS L +G + D LN + K R+T Sbjct: 185 FELPLQHMVKKGYLTPPIHYDAAIAHYDFSLLTESLDGEQNTDDIALNELIHKHPRVTKA 244 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 + QI++ + R+GVMIFAAT++HAKEI LPA+ ALITG T +RD LI FKA+ Sbjct: 245 VTEQILQLSQDRQGVMIFAATIDHAKEIASYLPADKTALITGKTKLKQRDSLIAAFKAKE 304 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 +YLVNV+VLTTGFDAPHVD+IAILRPT+S+SL+QQIVGRGLRL+PGK DCL+LDY N Sbjct: 305 IKYLVNVSVLTTGFDAPHVDVIAILRPTQSISLFQQIVGRGLRLSPGKKDCLVLDYTNNG 364 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 ++++ PE+G + D+V VQ+ CP+C FANTFWG+ A+G ++EHFGRRC G E++ G Sbjct: 365 YNIFQPEIGEKRPTQDSVAVQIHCPSCDFANTFWGRKDAEGNILEHFGRRCHGLLENEQG 424 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 +QC +RFRFK CP CN ENDIAAR+C+ C L+DPDD+L++AL LK+ VLRCSG++ Sbjct: 425 EEQQCSYRFRFKRCPYCNEENDIAARQCQHCAEKLIDPDDLLRSALNLKNNKVLRCSGIT 484 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 + EK +KI Y+DEDG +SE FR R F LF R +++ Sbjct: 485 PELNIKEKS--IKIIYHDEDGLTLSETFRFNFKKSRQTFNDLFAR-RIANGSQSIQFDKI 541 Query: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHEL 584 +I L PDFV+A+ + Q+WQV E++FDY+G +R A+EL Sbjct: 542 EEIERFLPYLPTPDFVIAKKQKQHWQVTERLFDYQGPYRKANEL 585 >UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Tax=Shewanella RepID=Q12MF5_SHEDO Length = 616 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 307/587 (52%), Positives = 400/587 (68%), Gaps = 12/587 (2%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQQ+AVDAT+NHF+R K AV+VLPTGAGKS+VIAELAR+A+G VLVL HVKELV Sbjct: 35 IQLRNYQQDAVDATINHFKRSKDSAVLVLPTGAGKSIVIAELARIAKGNVLVLTHVKELV 94 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QN K L A I++AGLK+K++ GK V S+QS AR ++ F FSL+I+DECHR+ Sbjct: 95 EQNAQKVGLLTESASIYSAGLKQKKAQGKTVVASIQSAARAVERFSQGFSLVIIDECHRV 154 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 ++ SQYQQ+L+ L K NP L+LLGLTATP+RLG G++Y+ HYHG V + +F +CI Sbjct: 155 STEKTSQYQQLLSQLIKQNPKLKLLGLTATPYRLGSGYVYRHHYHGKVGNTDNPVFENCI 214 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 ++LP+R +IK GYLT P+ D QYDF+ L G + +A+++ LK Q R T II Sbjct: 215 FDLPMRPLIKQGYLTEPKIFDGLSAQYDFNALSPSDTGEYPQAEVDALLKHQGRATKAII 274 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFR 302 Q+ + A R+GV+IFAATV HA+EI+ L + AALIT TP ERD +I FK + R Sbjct: 275 KQVKQVAELRRGVLIFAATVRHAQEIMTYL-DDSAALITATTPHLERDDIISRFKTESLR 333 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 Y+VNVAVLTTGFDAPHVDLIAILRPT S+SL+QQ++GRGLRLAP KTDCL++DYA N +D Sbjct: 334 YIVNVAVLTTGFDAPHVDLIAILRPTASISLFQQMIGRGLRLAPNKTDCLVIDYAANGYD 393 Query: 363 LYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDD---- 418 LY PEVG K S VPVQV CP C FANTFWG DG L+EH+GRRCQG + + Sbjct: 394 LYYPEVGQAKPNSRAVPVQVHCPVCSFANTFWGLVDNDGDLVEHYGRRCQGLVDSELQSS 453 Query: 419 --DGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRC 476 + QCDFRFR K CP C ++NDIAAR C +CD+ L+DPD LK L + + +C Sbjct: 454 TVNIKEVQCDFRFRSKACPDCGSDNDIAARICLQCDSTLIDPDKRLKQVLNAQHHHLFKC 513 Query: 477 SGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIP-L 535 M L + G L + Y D +G D ++F TP QR AF +F HTRTPG+ Sbjct: 514 QEMLL----TQDGNKLVVQYLDVEGNDFKQQFYFDTPGQRRAFFAVFAMSHTRTPGMAHP 569 Query: 536 RWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAH 582 ++ D+L R PD ++ + ++WQ++E FDY+GR++L++ Sbjct: 570 KYHKVEDVLKDLKRFRKPDMLLLKKNKKFWQLQEAFFDYQGRYQLSY 616 >UniRef50_B5JP68 Type III restriction enzyme, res subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP68_9BACT Length = 578 Score = 674 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 300/578 (51%), Positives = 400/578 (69%), Gaps = 5/578 (0%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 ++ LR YQQEAVD+TLNHFRR +TPAVIVLPTGAGKSLVIAELA++A+GRVLVLAHVKEL Sbjct: 1 MYKLRTYQQEAVDSTLNHFRRKRTPAVIVLPTGAGKSLVIAELAKIAKGRVLVLAHVKEL 60 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 V QNH KY++ GL+A I++AGL +K KV+FGS+QSVA D F +F+LL++DECHR Sbjct: 61 VEQNHLKYESYGLQAGIYSAGLNQKNGERKVIFGSIQSVANASDDFFEDFTLLVIDECHR 120 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G + +SQY +++ L N + +LGLTATP+RLG GWIY + G ++ E F+ C Sbjct: 121 VGLEPDSQYAKVIKRLKLNNSRICILGLTATPYRLGLGWIYNYAIRGELKTQELRFFKQC 180 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 IY+LPL YMIK+ YLTPP ++D+PV YDFS L + ++ L L +Q+R+TP I Sbjct: 181 IYDLPLEYMIKNKYLTPPVKVDIPVTSYDFSEL-TEGGSAYTMTQLEEVLHQQRRLTPLI 239 Query: 242 ISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQ 299 I I++ + R+GVMIF++TV+HA+EI+ LP A LI G+T +ERD +I +FK + Sbjct: 240 IKNIVDITDSYQRQGVMIFSSTVKHAQEIMKTLPQGQARLILGETEDSERDQIINDFKNK 299 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 F+YLVNV+VLTTGFDA HVD+IAILRPTES+SLYQQI+GRGLRL GK DCL+LDY G Sbjct: 300 AFKYLVNVSVLTTGFDAAHVDVIAILRPTESISLYQQIIGRGLRLDTGKKDCLVLDYTGM 359 Query: 360 PHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDD 419 H +++PE+G K S++V VQV CP CGF N FWG DG +IEHFGR+C+G ++ D Sbjct: 360 GHSIFSPEIGEKKTVSESVAVQVPCPECGFINDFWGILDDDGHIIEHFGRKCRGGNQNPD 419 Query: 420 GHR-EQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSG 478 + C +RFRFK C QC+AENDI AR CR+C VL+DPD LK A KDA VL Sbjct: 420 TYEFTPCGYRFRFKVCEQCSAENDITARECRKCGNVLIDPDTKLKQAKLSKDAHVLTPDS 479 Query: 479 MSLQHGHDEKGE-WLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRW 537 + + D+ G +L++ YYD D ++E L F F+R H + P + L Sbjct: 480 IEMLERFDKNGNPYLQVKYYDYDARFLAEIHYLNNQTSIKKFNINFLRSHLKRPEMKLNI 539 Query: 538 ITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYE 575 + +I+ Q LR P FV+ R + ++W++ EK+F E Sbjct: 540 SSVGEIIQMQPQLRMPSFVIGRKQEKFWKITEKIFSEE 577 >UniRef50_Q5G7M7 Putative helicase n=1 Tax=Listonella phage phiHSIC RepID=Q5G7M7_9CAUD Length = 953 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 195/583 (33%), Positives = 289/583 (49%), Gaps = 67/583 (11%) Query: 35 AGKSLVIAELARLAR----GRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG 90 GKS++IAE+A+ + LV+ KE+ QN KY++ G A ++A + +KE Sbjct: 374 CGKSVIIAEIAKFFNEVSGKKTLVIGPNKEICQQNAEKYKSYGFPASFWSASIGKKEMRH 433 Query: 91 KVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT 150 +VVFGS S+ LD F +F +I+DE H + ++I +H+ + N LR++GLT Sbjct: 434 QVVFGSPVSIKNELDKFGPQFGAVIIDEAHLLS----PTVKEICSHMKEQNNLLRIVGLT 489 Query: 151 ATPFRLGKGWIYQFHYHGMVRGDE---KALFRDCIYELPLRYMIKHGYLTPPERLDMPVV 207 ATP+RLG G+IY++ + GDE F+ +Y + + +I G+LTPP Sbjct: 490 ATPYRLGSGYIYEYDDNNNPVGDECTKNPFFKRLVYRITAKELIDQGFLTPPIADHEMAS 549 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 +YD S +Q F D+ + + Q R+T II+ ++ + MIFAAT++HA+E Sbjct: 550 KYDTSGVQLNKRNQFDAKDIEQAFEGQGRLTAQIIADVVSHCQNKMCCMIFAATIQHAQE 609 Query: 268 IVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRP 327 I+ LP ++ +TG T +R+ IE K +YLV+V LTTG D +VD+IAILR Sbjct: 610 IMESLPKHNSYCVTGKTKRKDREKAIERAKTGEIKYLVSVGTLTTGVDITNVDVIAILRA 669 Query: 328 TESVSLYQQIVGRGLRLAPGKTDCLILDYAGN------PHDLYAPEVGTPKGKSDNVPVQ 381 TES SL QQI+GRGLRL KT CL+LDYA N DL+ P++ G + V Sbjct: 670 TESASLLQQIIGRGLRLHENKTTCLVLDYAENIERHGLEDDLFNPDIRVSGGGDGSAKVN 729 Query: 382 VFCPACGFANTFWGKTTAD--------------GTLIE--------HFGRRCQGWFEDDD 419 C +CG N F + D G IE H+GRRC G + + Sbjct: 730 ALCKSCGTVNEFTLRKGCDLDHIDEYGYALDLAGERIEMEGQPMPAHYGRRCYGG-DVIN 788 Query: 420 GHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKA----------ALRLK 469 GH +C R+ K CP+C ENDIAAR C C T LVDP++ LKA A+ Sbjct: 789 GHYVRCSERWSMKVCPECEVENDIAARYCTSCRTELVDPNEKLKADYKRMKRDPRAISTD 848 Query: 470 DALVLRCSGMSLQHGH-----DEKGEWLKIT-YYDEDGADVSERFRLQTPAQRTAFEQLF 523 L C Q G+ D + E+ T +Y D ++V + + E +F Sbjct: 849 KMLGWECKPWITQRGNNTLRVDYRSEYRSFTIWYSPDSSNVKAQGLWNNLS-----EVVF 903 Query: 524 IRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ 566 + H D L + P+ V + +G +++ Sbjct: 904 GKGHI-----APTPEAFCDALK-RGFGTMPETVTVQKQGDFFR 940 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 19/35 (54%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGA 35 M F LRPYQ+EAV + H + P V+ TG Sbjct: 1 MAFELRPYQKEAVKKVIEHVKICLDPCVVDAATGC 35 >UniRef50_A3JKG0 Putative ATP-dependent helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JKG0_9ALTE Length = 868 Score = 360 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 185/536 (34%), Positives = 262/536 (48%), Gaps = 61/536 (11%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR----------GRVL 53 LR YQ EAV A R+ P +I LPTG+GKS VIA LA + + +V+ Sbjct: 49 NLRDYQLEAVLAAAFRIRKTVEPILITLPTGSGKSWVIAALASVVKEMSDARSTKVKKVM 108 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG---E 110 VLAH KELVAQNH K A G +A I++AGL +++ G VVFGS QS+ + F E Sbjct: 109 VLAHSKELVAQNHQKMGAAGYKATIYSAGLSTRDASGDVVFGSRQSIINAVGEFAQLDYE 168 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY---QFHYH 167 FS + VDE H +Q ++I+ L VNP+LR++GLTATP+ LGKG+I+ F Sbjct: 169 FSAVFVDEAH----SMPTQTREIIEALRSVNPNLRVIGLTATPYALGKGYIFAQDTFRDL 224 Query: 168 GMVRGD--EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA 225 +R ++ F + +Y+ + + L PP L Y+ L+ G FSEA Sbjct: 225 EPMRDIYAKEPYFAERVYDKCIEELFADEQLCPP-ILGTISDHYNTEALERTVGGSFSEA 283 Query: 226 DLNRE-LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDT 284 N + Q +T I++ ++ + R GVM FA EHA++I+ LP + AAL+ T Sbjct: 284 SNNAVFVTGQADLTKRIVADVVMQSKKRHGVMFFAQNREHARQILSFLPGDRAALVDSGT 343 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 +R IE+FK+ + +YLV VA L GFDAP+V +IA+L+ TES + +QQI+GRGLRL Sbjct: 344 KAKDRAQFIEDFKSTKLKYLVTVAALAIGFDAPNVSVIAVLKHTESPAFFQQIIGRGLRL 403 Query: 345 AP--GKTDCLILDYAGNPH---DLYAP----EVGTPKGKSDNVP-VQVFCPACGFANTFW 394 P GK DCL+LDY N +L++P + P +P V+V CP C NTF Sbjct: 404 CPEIGKRDCLVLDYGQNVSADANLFSPAIQVRMPKPGLDGPIIPVVEVICPDCDHVNTFR 463 Query: 395 GKTTADGT------------------------LIEHFGRRCQGWFEDDDGHR--EQCDFR 428 + H G +C G D G + +CD+ Sbjct: 464 KAAWPQDMEMTDTGFLYHRDTRAIFTDSDNKPMAGHMGAQC-GNLLDVPGKKMPVRCDYT 522 Query: 429 FRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHG 484 + C C N C C+ L ML R + + + Sbjct: 523 WGAILCTACKRRNSHRTDFCVACEEPLSKRAKMLSMTTSRDANYTQRLAKVVSRQR 578 >UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ48_9GAMM Length = 678 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 165/504 (32%), Positives = 259/504 (51%), Gaps = 58/504 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR----------GRVLV 54 RPYQ+EAVD + P +IV+PTGAGKS VIA ++ + R +VLV Sbjct: 18 FRPYQREAVDCYTRWVVSTREPLLIVMPTGAGKSWVIAGISAVLRQLAYEKTGLRKKVLV 77 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFSL 113 LA ELV QNHAK +A G +A IF AG K +++ + ++V N++ + EF+ Sbjct: 78 LAPSAELVGQNHAKMEASGFKASIFCAGAGDKSHSEDIIYATPETVRVNIEELMEYEFAG 137 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE HR + + + + NP++R+ GLTATP+RL +G+IY+ H + Sbjct: 138 VLIDEAHRTSNQII----EAIDTIRSRNPNVRVAGLTATPYRLTEGYIYRQDKHLDLPPM 193 Query: 174 EKAL-----FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 L F IYE+ Y+I+ GY+ PP D+ QYD ++L ++ + Sbjct: 194 SDDLTLDPYFSYMIYEVSAHYLIEQGYILPPIFGDV-TAQYDTTKLVRNRTANWTNESSD 252 Query: 229 RELK--KQQRITPHIISQIM-EFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTP 285 + + I+ ++ + R ++F ++HA+ ++ LLP + +I+ TP Sbjct: 253 EVFVHGNARDLAQEIVKEVKQKIRGGRHSAILFCQNIKHAEMVLSLLPPSQSGMISHKTP 312 Query: 286 GAERDVLIENF-KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 R +I +F + + F+YLVNV+ LTTGFD VD+IAILR T S SL+QQI+GRGLRL Sbjct: 313 RRVRRQIIADFHRKKAFKYLVNVSTLTTGFDVAAVDVIAILRATHSASLFQQILGRGLRL 372 Query: 345 AP--GKTDCLILDYAGNPHDL------YAPEV--GTPKGKSDNVPVQVFCPACGFANTF- 393 +P GK DCL+LDYA N ++PE+ P + ++ ++V CPAC N F Sbjct: 373 SPETGKEDCLVLDYANNLGRFCPRGDPFSPEIRAALPSDREGSMRIEVDCPACAGTNWFQ 432 Query: 394 -------------WGKTTADGT---------LIEHFGRRCQGWFEDDDGHREQCDFRFRF 431 + ++ +G L H G +C + E + +C+ R+ Sbjct: 433 AVDLPGTEIDAQGYLRSIENGMPVLTALGERLAGHIGVQCTNFVEGPNQRLVRCEHRWSS 492 Query: 432 KNCPQCNAENDIAARRCRECDTVL 455 CP C N + C +C+T+L Sbjct: 493 VECPACGTLNTTYDQWCVKCETIL 516 >UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I0_9BACT Length = 550 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 142/394 (36%), Positives = 218/394 (55%), Gaps = 23/394 (5%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL----ARLARGRVLVLAHV 58 LR YQQ+AVDA + RR+ +V+PT GK+ ++A + + GRV++L+HV Sbjct: 1 MQLRQYQQQAVDAVYKYLRRYDDNPCVVIPTAGGKTPILATIVKDAIQQWDGRVMILSHV 60 Query: 59 KELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIV 116 KEL+ Q K + E DI ++ GLKR ++ K + +QS RN D F G F L+IV Sbjct: 61 KELLEQAVDKIHTVYPECDIGIYSTGLKRWDTDNKCIVAGIQSAYRNTDGF-GNFDLIIV 119 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H I + + Y+ L + NP LR++GLTATP+RL G I Sbjct: 120 DEAHLIPEKGDGMYRNFLRRMKDHNPELRVIGLTATPYRLTSGPICAPD----------N 169 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + +E+ ++ +++ G+L P R + D S L ++ G F E+++++ L Sbjct: 170 ILNKICFEVGVKELLQQGFLCPL-RSKASRQEIDASGLHVRA-GEFIESEVDK-LMNTGD 226 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 + S+I+ +A RK V+IF +++HA+ ++ + D A + GDT + R ++E Sbjct: 227 LVAQACSEIISYARERKAVIIFCCSIDHAQNVLAHIRKHDSTAEAVFGDTLPSFRAEILE 286 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 FKA + ++LVNV VLTTGFDAP++D + +LRPT S LY Q+VGRG RL P K DCL+L Sbjct: 287 RFKAGKIKFLVNVGVLTTGFDAPNIDCVVLLRPTASPGLYYQMVGRGFRLHPDKKDCLVL 346 Query: 355 DYAGNPHDLYAPEVGTPKGKSD-NVPVQVFCPAC 387 D+ GN + + K+D P+ CP C Sbjct: 347 DFGGNIERHGPVDSIQVEPKADREEPLGKTCPKC 380 >UniRef50_A0LBR5 Type III restriction enzyme, res subunit n=3 Tax=Proteobacteria RepID=A0LBR5_MAGSM Length = 538 Score = 337 bits (865), Expect = 7e-91, Method: Composition-based stats. Identities = 166/604 (27%), Positives = 261/604 (43%), Gaps = 91/604 (15%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-----LARGRVLVLA 56 + LRPYQ++A+DA +F++ +I +PT GKSLV+A R R+LV+ Sbjct: 1 MLELRPYQRQAIDAIYAYFQKKTGNCLICIPTAGGKSLVMATFIREAIEHYPETRILVVT 60 Query: 57 HVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 HV+EL++QNHA+ + +A I +AGL ++ +V+F +QSV + Q L+ Sbjct: 61 HVRELISQNHAELMGIWPDAPAGIHSAGLGARDVDAQVLFCGIQSVHKRAYDIQ-RCDLV 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 +VDE H I + Y++ L LT +NP+++++G TATP+RL G +++ + Sbjct: 120 LVDEAHLIPRTSNTMYRKFLEELTVINPYMKIIGFTATPYRLDSGLLHK---------GK 170 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 ALF D +++P+ +I G+L+P Q D S + + G F L + Q Sbjct: 171 DALFDDIAFDVPINDLIDEGFLSPL-ISKKTDTQLDVSGVGTR-GGEFIAGQLEAAV-DQ 227 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVL 292 +T + +I+ R+ ++F + V HA+ + + A + I G TP ERD + Sbjct: 228 ADVTRAAVEEIIALGQDRRAWLLFCSGVAHAEHVRDAVKARGYSCEGIFGHTPKEERDGI 287 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 IE F+A + R L + VLTTGF+ VDLIA+LRPT+S LY QI GRG RL P K +CL Sbjct: 288 IEAFRAGQIRALAAMNVLTTGFNVKSVDLIAMLRPTQSAGLYVQIAGRGTRLHPEKENCL 347 Query: 353 ILDYAGNPHDLYAPE----VGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 +LD+AGN + + Q CPAC N Sbjct: 348 VLDFAGNVARHGPIDQIQSFVKKDKEEPGEAPQKVCPACQAVN----------------- 390 Query: 409 RRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRL 468 A + C ECD P+ + A Sbjct: 391 ---------------------------------PAAVQYCIECDFEFPPPEIKINATATT 417 Query: 469 KDALVLRCSGMSLQHGH-------DEKGEWLKITYYDEDGADVSERFRLQTP--AQRTAF 519 K L H + K L++ Y E + A++ A Sbjct: 418 KKILSSGKPEWVRVHDIVYKRHQKEGKPPSLRVEYM-CGLQWHKEWVCFEHEGYARQKAV 476 Query: 520 EQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVRE-KVFDYEGRF 578 + F R TP + L L PD + R G++ ++ + + D G Sbjct: 477 QWWFQRVGLTTP----VPNSVGQALTMVDDLPIPDEIKIRSNGKFIEIMDCRFHDKGGDH 532 Query: 579 RLAH 582 ++ Sbjct: 533 DRSN 536 >UniRef50_UPI0001911E38 putative helicase n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. J185 RepID=UPI0001911E38 Length = 293 Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 221/233 (94%), Positives = 229/233 (98%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 MIFTLRPYQQEAVDATL+HFRRH+TPAVIVLPTGAGKSLVIAELAR+ARGRVLVLAHVKE Sbjct: 1 MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKE 60 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LVAQNHAKY ALGLEADIFAAGLKRKES GKVVFGSVQSVARNLDAFQ EFSLLIVDECH Sbjct: 61 LVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVARNLDAFQEEFSLLIVDECH 120 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 RIGDDE+SQYQQILTHL+KVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG++ ALFRD Sbjct: 121 RIGDDEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGNDNALFRD 180 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL+K Sbjct: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELEK 233 >UniRef50_B5ZFR8 Type III restriction protein res subunit n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFR8_GLUDA Length = 475 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 122/439 (27%), Positives = 195/439 (44%), Gaps = 58/439 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 + LRPYQQ+A+D + FR ++V PTGAGK+++ + +A+ A + RVL++AH Sbjct: 1 MIQLRPYQQQAIDGVRSAFRDGHRAPLLVAPTGAGKTVMFSHIAQSASAKQSRVLIIAHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KEL+ Q K G++ I A + + V SVQ++AR LDA F L+I+DE Sbjct: 61 KELIRQASRKLSDTGVDHGIIAP--WAEPTGHLVQVASVQTLARRLDAL-PRFDLIIMDE 117 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + +++ P ++LG+TATP R+ + + +F Sbjct: 118 AHHA---VAGTWAKVI----AAQPWAKILGVTATPERMDGRGL---------GANAGGVF 161 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + + +I+ +LTP PV D + ++ ++ G + A L++ + + + + Sbjct: 162 DMLVMGPTIGELIQGEFLTPSRVF-APVGAPDLTGVKTRA-GDYDIASLSKVMAEPK-LV 218 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENF 296 + +A+ + F A VE AK A G PG ERD I Sbjct: 219 GDAVEHYGRYASGLPAI-AFCACVEDAKTYADAFCRAGWRATAAYGAMPGDERDAAIGGL 277 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + L +++ G D P V + +LRPT+S+ L+ Q +GRGLR PGK+ ++LD+ Sbjct: 278 ATGAVQVLTTCDLVSEGLDVPCVGAVILLRPTKSLGLHVQQIGRGLRPMPGKSHLIVLDH 337 Query: 357 AGNPHDLYAPE------VGTPKGKSDNVPVQ---------------VFCPACGFANTFWG 395 AGN + P+ + K K PV C CG G Sbjct: 338 AGNTFNHGLPDQPHDWSLDGRKKKDKGEPVATWRCEHCFAMNSAVMRVCAECGERRASEG 397 Query: 396 K---------TTADGTLIE 405 K ADG LIE Sbjct: 398 KDEDDVERAAEVADGELIE 416 >UniRef50_D1WDT8 51.5 kDa protein n=5 Tax=Lactobacillus RepID=D1WDT8_9LACO Length = 465 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 122/516 (23%), Positives = 207/516 (40%), Gaps = 88/516 (17%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 +F LR YQ + ++ + + ++ P GK++++AE+AR L R+L L H Sbjct: 6 VFKLRDYQLKTINKIYDSIKSGHKKIIVQQPPRTGKTVIMAEIARRTTLKGNRLLFLIHR 65 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KE++ Q ++ ++ ++ G VQ++ R ++ E L+++DE Sbjct: 66 KEVLEQAINTFKQQEVDMELATMG-------------MVQTLYRKVNRL-PEPQLILIDE 111 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H YQ IL P+ +L TATP R GK + Q + Sbjct: 112 AHHAA---AKTYQTILNAF----PNAFVLLFTATPIRTGKKQLDQ-------------VA 151 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 D I ++ +I GYL + V D +L+ S G F+ A + + +I Sbjct: 152 DDIIVGESIKNLISQGYLANFKYFARKDV--DTKKLKKSSTGDFTNASMEEAV--STKIY 207 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 H++ + A ++ V +F +VE AK I + A + G+T A R+ ++ +F Sbjct: 208 GHVLDNYLRIAKGKQAV-VFTYSVESAKRIAKQFNSAGITAEELDGNTDTATRESIVNDF 266 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + ++ LVNV + T G D P VD + + RPT S++LY Q R L GKT +I+D+ Sbjct: 267 RNKKITILVNVNLFTEGVDLPDVDCVIMTRPTASLALYLQFSMRCLNPRKGKT-AIIIDH 325 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN P T I ++ + + Sbjct: 326 VGNYERFGLP----------------------------NSERDWRTAIVTKDKKTKKKQQ 357 Query: 417 DDDGHREQCDFRFRFKN--------CPQCNAENDIAARRCRECDT-----VLVDPDDMLK 463 +D QCDF FR CP C N I R+ E V+ D ++++ Sbjct: 358 NDSLSIVQCDFCFRVFERSDVKNGTCPGCG--NPIKVRKAPEVTNDQLQEVIQDRKNLVE 415 Query: 464 AALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDE 499 + L + +S H + E + + Y Sbjct: 416 KIISDNTKLAIAGKKLSELHTYKELKAYADLHGYRP 451 >UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus elongatus RepID=Q31QB2_SYNE7 Length = 469 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 119/435 (27%), Positives = 189/435 (43%), Gaps = 57/435 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAHVK 59 F LR YQQ+ V+ + + ++ +PTGAGK+ V + ++ + R L+L H K Sbjct: 4 FELRDYQQQVVEELRHSYATGHRSPLVAMPTGAGKTAVFSYISLQSAAKQKRTLILVHRK 63 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 EL+ Q LG+ + A+G SVQ++ R LD E L++VDE Sbjct: 64 ELLLQASRSLDRLGVRHGLIASGFSWMP--YPTQVASVQTLVRRLDRLDWEPELIVVDEA 121 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H + D + + ++L+ P R+LG+TATP R + +F Sbjct: 122 HHVVPD--NTWGKVLS----AYPRSRVLGVTATPCRTDGRGLGD-------------VFD 162 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 D I + + + G+L P + P +Q D + ++ ++ G +++ L + + K I Sbjct: 163 DLIIGPTIAELTERGFLCPTKIY-APPIQADLTGVRMRA-GDYAKDQLAQAMDKP-VIVG 219 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 I + F A+VE A+++ + AA + G A R LI++ Sbjct: 220 DAIDHYRRLCPGVPAIG-FCASVEIAQKVAVEFSSAGFKAASLDGTLDSATRSHLIDDLG 278 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + R + L + +++ G D P V +LRPT+S+ LY Q VGR LR APGK+ LILD+ Sbjct: 279 SGRIQVLTSCEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLRPAPGKSHALILDHV 338 Query: 358 GNPHDLYAPEVGTP-----------KGKSDNVPVQV--------------FCPACGFANT 392 GN PE KG+S+ P V CP CG Sbjct: 339 GNVMRHGLPEADREWTLEGEKRRSRKGESEEKPETVRQCPKCFCAHAPQPTCPNCGHRYV 398 Query: 393 FWGK--TTADGTLIE 405 + G LIE Sbjct: 399 VEARRLEEVRGELIE 413 >UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q6C2M8_YARLI Length = 695 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 106/417 (25%), Positives = 174/417 (41%), Gaps = 38/417 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLAHV 58 LR YQ+E + A L+ K + L TG GK+++ A L A+ +VL+L H Sbjct: 28 DLRKYQKECISACLDALNAGKRRIAVSLATGGGKTVIFANLLNQIAAKNTGNKVLILTHR 87 Query: 59 KELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA-RNLDAFQG-EFSLLI 115 KEL Q + + + G + VV VQ++ + L+ +F +I Sbjct: 88 KELATQAQNQISRFNPDLKVEIEMGTTVADPSADVVVAGVQTLQGKRLEQLDPTDFKAII 147 Query: 116 VDECHRIGDDEESQYQQILTHL--TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DE H Y I+ H +K + ++G TAT FR + + Sbjct: 148 IDEAHHAASQ---SYLNIIQHFKASKAKSDVAVIGFTATLFRTDTKSLTKA--------- 195 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 F +Y+L MI G+L+ + + D + ++ + G F + L++ + Sbjct: 196 ----FDHVVYDLSFMDMINDGWLSSVK-FSTVISMADLTEVEIGAAGDFKTSSLSKVVNT 250 Query: 234 QQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAER 289 R+ + A K ++F V+H +++V L ++ +A +TG T R Sbjct: 251 D-RMNSLVFRTWQNMTAKHGYKSTIVFCVDVQHVRDLVELFRSQGINAEGVTGTTKPKTR 309 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 +I+ FK+ L N V T G D P++DL+ + RPT+S L Q++GRGLRL PGK Sbjct: 310 QAIIDEFKSGDIPVLFNCGVFTEGTDIPNIDLVILNRPTKSKGLMMQMIGRGLRLHPGKD 369 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTF-WGKTTADGTLIE 405 ++D G P +P C F K T D +E Sbjct: 370 HTAVVDLVGTV-----PAGMVTAPSLLGLPSGHHCDRASFEELLEEKKKTKDPDHVE 421 >UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJT9_RHOVA Length = 473 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 118/468 (25%), Positives = 202/468 (43%), Gaps = 54/468 (11%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAH 57 M F LRPYQ + + T + R K+ ++ LPTG GK+ + A +A + RV+ H Sbjct: 1 MAFALRPYQAKLITDTRDALREAKS-VLVQLPTGGGKTAIAAYMAGSAAKRKKRVVFGCH 59 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +EL+ Q +Q +G+ + AA + S+ ++A+ LD + L + D Sbjct: 60 RRELIKQTMKTFQKVGIPFGVIAADFTPD-PRQPIQIASIPTLAKRLDRYPAP-DLYVPD 117 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H G + + +++ + + +GL+ATP RL + ++ Sbjct: 118 EAHHAG---AATWAEVIDSFARRG--TKTVGLSATPERLDGTGLGRW------------- 159 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F +Y ++I++G+L+P + D + ++ ++ G F++A L I Sbjct: 160 FDTMVYGPSTAWLIENGFLSPYRLFAPGTI--DVTGIK-RTAGDFNKAALEER-ASTSAI 215 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFK 297 T + + FA R+ M+F +++H+ +V A D RD LI F+ Sbjct: 216 TGNAVEHYARFARGRR-AMVFCVSIKHSMSVVERFQAAGFRAAHIDGKSENRDELIAAFE 274 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + + L +V +++ GFD P ++ +LRPT+S++LY Q VGR LR PGKT+ +ILD+A Sbjct: 275 TGQIQILCSVDLVSEGFDLPALECAILLRPTQSLALYLQQVGRALRTHPGKTEAIILDHA 334 Query: 358 GNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFED 417 GN P +G P + G+ T +R ++ Sbjct: 335 GNS----LPREQGGRGHGL--------PDDDRIWSLDGRATK---------KRASEDDDE 373 Query: 418 DDGHREQCDFRFRFK----NCPQCNAENDIAARRCRECDTVLVDPDDM 461 + QC FR CP C A R E L + D Sbjct: 374 ESVPTRQCPICFRVHAPAPVCPNCGHSYPTAGRTIEELAGELQEIDRA 421 >UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida RepID=B9W8D3_CANDC Length = 654 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 112/367 (30%), Positives = 174/367 (47%), Gaps = 29/367 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAHVK 59 F LR YQQ+A+D L I + TG+GK++V + L L + + LVLAH + Sbjct: 31 FPLRDYQQKAIDLILESSGSGVKRQAIEMATGSGKTVVFSHLIPLLKREGAKTLVLAHTQ 90 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 EL+ Q+ K + + + G R V+ SV S+AR L F + F +I Sbjct: 91 ELITQSRDKINKVNPDLKVGIEMGKVRSTPDDDVIVASVMSLARSNRLARFDPDEFKTII 150 Query: 116 VDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DECH Y +IL H + + ++G TAT R K + Sbjct: 151 IDECHHA---IAPSYLKILKHFKADTKDTDVHVIGFTATLARTDKQKLGT---------- 197 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 +F +++ L MI++ L + ++ + + + + + G + + L L K Sbjct: 198 ---VFDKIVFQRSLPTMIENKELAEFKISNVSIKNLNLTNVP-KKGGDYDSSSLYLALNK 253 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDV 291 I I+ ME A K +IF VEH +E+ GL + DA + G+T ER+ Sbjct: 254 VD-INEKILLAYMELAKDYKSTIIFCVNVEHCREVCGLFQQQGIDAQYVLGETSRIEREF 312 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E+FK +F L NV V T G D P++D I + RPT S SL Q++GRGLRL K+ C Sbjct: 313 IVEDFKQGKFPVLCNVGVFTEGTDIPNIDSIILARPTMSQSLMIQMIGRGLRLHKEKSHC 372 Query: 352 LILDYAG 358 ++D G Sbjct: 373 HVIDLVG 379 >UniRef50_B1M5E1 Helicase domain protein n=8 Tax=Alphaproteobacteria RepID=B1M5E1_METRJ Length = 569 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 144/406 (35%), Positives = 205/406 (50%), Gaps = 32/406 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTP-----AVIVLPTGAGKSLVIAELARL-----ARGR 51 + LR YQ+ ++DA + R +IVLPTGAGK+LVIA LAR R Sbjct: 1 MLRLRDYQRASLDALSAAWARGGADDAAPGHLIVLPTGAGKALVIAALARETLDENPLAR 60 Query: 52 VLVLAHVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 V ++ H +ELVAQN ++ A IF+AGL+R+E+ +V+ +QSVA LDA Sbjct: 61 VAIVTHSRELVAQNFSELTRSWPGAPAGIFSAGLRRREAGAQVLVCGIQSVADRLDAIGP 120 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L+IVDE H I +++Y + L L P LR+ G TATP+RL G + + Sbjct: 121 R-DLVIVDEAHLIPRAADTRYGRFLAGLRARTPGLRVAGFTATPYRLDSGRLDE------ 173 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 E LF YE +I+ G+L P + Q D S + + G + +L Sbjct: 174 ---GEHRLFSGIAYEADTFTLIRRGFLAPLVS-KATLTQLDVSGV-GRRGGDYIPGELEA 228 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 + + IT ++++ E+ R+ + F A + HA+ + + AE ++G+TP Sbjct: 229 AVNRDW-ITRAAVAELAEYGRARRAWLAFCAGLAHAEAVRDAVRAEGYSCESVSGETPRR 287 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ERD ++ F+A + R L +V VL TGF+ P VDL+A+LRPT S LY Q VGR LR APG Sbjct: 288 ERDRIVAAFRAGQIRCLTSVGVLGTGFNVPEVDLVALLRPTRSTGLYVQQVGRALRCAPG 347 Query: 348 KTDCLILDYAGNPHDLYAPEV-----GTPKGKSDNVPVQVFCPACG 388 K D LILDYAG + T CP CG Sbjct: 348 KADALILDYAGLVRMHGPVDAVTVRSATQGLGGAGASRAKPCPGCG 393 >UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5DHE1_LACTC Length = 672 Score = 313 bits (803), Expect = 9e-84, Method: Composition-based stats. Identities = 103/372 (27%), Positives = 163/372 (43%), Gaps = 35/372 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-------RVLVL 55 LR YQ E +D L + + + L TG GK+++ + L R R L+L Sbjct: 31 LALRDYQHECIDRCLESISQGRRRIGVSLATGGGKTVIFSNLIDRLRRESGKSGYRTLIL 90 Query: 56 AHVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEF-S 112 H +EL Q QA GL I K + VV SVQS+ R L+ + Sbjct: 91 VHRRELAQQACRVLQAFFPGLNFQIEMGNYKCDINSADVVVASVQSLIRRLERYDPSCID 150 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPH--LRLLGLTATPFRLGKGWIYQFHYHGMV 170 L+I+DE H Y +IL H + L ++G +AT R + Sbjct: 151 LIIIDEAHHAA---AKSYLRILEHFKANHKDSILPVVGFSATFERADNKALS-------- 199 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 A+ + +Y + MI +L R V D S + + F+ L++ Sbjct: 200 -----AVIDEIVYHRGILEMIDDKWLCEG-RFTTVSVSLDLSDVAV-TGSDFNIDGLSKV 252 Query: 231 LKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAE--DAALITGDTPG 286 + ++ + ++ ++ K ++F ++H + + L +A +TG T Sbjct: 253 VNTKE-VNKVVLQTYLQKRDLHKLRSTLLFGCDIKHIETLHSLFVKHGVNAQYVTGKTRQ 311 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +ERD ++E+FK R L+N V T G D P+VD I + RPT+S SL Q++GRGLRL Sbjct: 312 SERDAIVEDFKRGRIEVLMNCGVFTEGTDIPNVDSILLCRPTKSRSLLVQMIGRGLRLHH 371 Query: 347 GKTDCLILDYAG 358 K C I+D+ G Sbjct: 372 SKKHCHIIDFVG 383 >UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=Q59PU6_CANAL Length = 623 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 176/367 (47%), Gaps = 29/367 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LR YQQEA+D+ L I + TG+GK++V + L L +G+ LVL H + Sbjct: 34 FALRDYQQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQ 93 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGE-FSLLI 115 EL+AQ++ K + + + R + V+ SVQS+A + F + F +I Sbjct: 94 ELIAQSYDKITRINPDLRVGIEMAESRARLNDDVIVASVQSLATNKRFTKFNPDDFKTII 153 Query: 116 VDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DECH YQ+IL H N ++ ++G TAT R K + Sbjct: 154 IDECHHA---VAPTYQKILKHFKADTKNTNINVIGFTATLARADKQML------------ 198 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 KA+F +++ L MI + L + + + + S ++ + + L + K Sbjct: 199 -KAVFDRIVFQRSLATMIFNKELASFKASKLYFKRLNLSNVKMK-GKDYDPKALYNAVLK 256 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDV 291 I H++ ME K +IF VEH +E+ LL + DA + +T +ER Sbjct: 257 AG-INEHLLLAYMELEKEYKSTLIFCINVEHCREVCALLQKQGVDARYVISETSNSERKT 315 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++ +FK +F L NV V T G D P++D I + RPT+S L Q++GRGLRL K+ C Sbjct: 316 IVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKEKSHC 375 Query: 352 LILDYAG 358 ++D G Sbjct: 376 HVVDLVG 382 >UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax=cellular organisms RepID=A0LI77_SYNFM Length = 1077 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 101/377 (26%), Positives = 161/377 (42%), Gaps = 31/377 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-ARLARGRVLVLAHVKELVAQNHA 67 Q+EA++A ++VL TG GK+ + A R G+VL +AH +E++ Q Sbjct: 380 QREALEALARTRAEGNQAGLVVLATGLGKTWLAAFDSVRFGAGKVLFVAHREEILRQALK 439 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGD 124 ++ + A + K V+F S+Q++ R +L +F F +++DE H Sbjct: 440 TFRRIRPFAALGLYNGTEKLPGADVLFASIQTLGRTNHLRSFDRNLFDYVVIDEFHHAS- 498 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 YQ+++ H LLGLTATP R G + + +Y Sbjct: 499 --ARSYQKLIDHFQPAF----LLGLTATPERTDGGDLLALCAENL------------VYR 540 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P +P + D+S + +S G F+E L R + ++R + + Q Sbjct: 541 CDLVEGIRDGLLCPFRYFGVPD-EVDYSNIPWRS-GRFNEEALTRAVATKRRAV-NALEQ 597 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFR 302 A R + F + HA + + AA + A R ++ Sbjct: 598 YRSRAGRR--TLAFCCSQRHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDGELD 655 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 + V + G D P+VD + +LRPTES L+ Q GRGLR+A GK ++DY GN Sbjct: 656 VIFAVDMFNEGVDLPNVDTVMMLRPTESRILWLQQFGRGLRVAEGKDYLRVIDYIGNHRS 715 Query: 363 L-YAPEVGTPKGKSDNV 378 P G+ DN Sbjct: 716 FLLKPRTLLGLGRGDNE 732 >UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=C4YDS3_CANAL Length = 646 Score = 310 bits (795), Expect = 8e-83, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 175/367 (47%), Gaps = 29/367 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LR YQQEA+D+ L I + TG+GK++V + L L +G+ LVL H + Sbjct: 34 FALRDYQQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQ 93 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGE-FSLLI 115 EL+AQ++ K + + + R + V+ SVQS+A + F + F +I Sbjct: 94 ELIAQSYDKITRINPDLRVGIEMAESRARLNDDVIVASVQSLATNKRFTKFNPDDFKTII 153 Query: 116 VDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DECH YQ+IL H N ++ ++G TAT R K + Sbjct: 154 IDECHHA---VAPTYQKILKHFKADTKNTNINVIGFTATLARADKQML------------ 198 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 KA+F ++ L MI + L + + + + S ++ + + L + K Sbjct: 199 -KAVFDRIAFQRSLATMIFNKELASFKASKLYFKRLNLSDVKMK-GKDYDPKALYNAVLK 256 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDV 291 + H++ ME K ++F VEH +E+ LL + DA +T T +ER Sbjct: 257 AG-VNEHLLLAYMELEKEYKSTLVFCINVEHCREVCVLLQKQGVDARYVTSKTSNSERKT 315 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E+FK +F L NV V G D P++D I + RPT+S L Q++GRGLRL K+ C Sbjct: 316 IVEDFKQGKFPVLCNVTVFAEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKEKSHC 375 Query: 352 LILDYAG 358 ++D G Sbjct: 376 HVVDLVG 382 >UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1_ANASP Length = 629 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 129/526 (24%), Positives = 206/526 (39%), Gaps = 73/526 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHV 58 +F LR YQQ+ + T + ++ L TG GK+++ AE+A + VLV+AH Sbjct: 1 MFNLRDYQQDLISKTFAAWSSGIRKVLLQLSTGGGKTVIFAEIASKMTAQGEGVLVVAHR 60 Query: 59 KELVAQNHAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +EL+ Q K A+ L+ I AG K + + S+Q++AR L+I+D Sbjct: 61 EELILQAAEKLTAVTKLQPGIIKAGYKS--TDSPLQIASIQTLARR--QTYPSAQLVIID 116 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y+++L PH +LGLTATP R + + + Sbjct: 117 EAHH---SSANSYRKLLD----AYPHALVLGLTATPRREDGYGL-------------RDI 156 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F I + + +I GYLT + + + +SR + F+ +L + Sbjct: 157 FDHLICSVSTKELITLGYLTDYKLI----AGFKYSRHKVPQKRDFTRKELEEVASDYKP- 211 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 ++ Q F A K +IFA V H+K+I A+ + G+TP ER ++ Sbjct: 212 -SEVLKQWQNFCAG-KKTVIFAVNVMHSKQIAAAFCADGITCEHLDGETPHNERQAILNR 269 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F++ + + + N A+LT GFD P I RPT SV+L+ Q++GR LR APGK ILD Sbjct: 270 FRSGQTQVISNCAILTEGFDCPDSSAAVIARPTSSVTLWLQMIGRVLRPAPGKDYATILD 329 Query: 356 YAGNPHDLYAP----EVGTPKGKSDNVPVQ-VFCPACGFA--------NTFWGKTTADGT 402 N L P + D CP C T + Sbjct: 330 MTDNWFRLGRPCDNRKWSLEPVSCDPDTQGSRCCPHCHHVFKPMPSLIRTKDCFSYEKAE 389 Query: 403 LIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDML 462 + + C C FR+ EN E D + + Sbjct: 390 FVIQYEVDCPN-----------CGKSFRWVLEESSTIENSGVPMIISESDIQFKEVPPEV 438 Query: 463 KAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF 508 + +L + + + K+ +Y G V + F Sbjct: 439 RPSLLT---------PIIEAKKRKFRNQEKKLVFY---GFTVRDWF 472 >UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBN3_DESAH Length = 1076 Score = 308 bits (790), Expect = 3e-82, Method: Composition-based stats. Identities = 89/360 (24%), Positives = 154/360 (42%), Gaps = 28/360 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVI-AELARLARGRVLVLAHVKELVAQNHA 67 Q+ A++A + A++V+ TG GK+ + ++ R GRVL +AH +E+++Q + Sbjct: 200 QERALEALRDSRNNGLQRALVVMATGVGKTWLAVFDILRNGFGRVLFVAHREEILSQAAS 259 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 + + + K ++FGSVQS+ + +L F + F +++DE H Sbjct: 260 TFLTVNPRMKVGFFHGNEKSEDADILFGSVQSLGKKIHLKKFDRTAFDYIVIDEFHHAS- 318 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + YQ IL + T LLGLTATP R I F + + + Sbjct: 319 --AASYQNILNYFTPSF----LLGLTATPERSDGRDIEAFCDN------------NVAFR 360 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P + D+ + +S F A++ + Q R I + Sbjct: 361 FDLTEAIEAGRLCPFTYFGIYDRHVDYELIPWRSR-RFDPAEIETAFETQAR-ALQIFEE 418 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT-GDTPGAERDVLIENFKAQRFRY 303 E +R + F ++ HA + + ++ R I+ + Sbjct: 419 WTEKGQSR--TLGFCVSIHHADFMASFFSGKGVKAVSVHSKSMVRRHDAIDRLSNGLLQI 476 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 + V + G D P +D + ++RPTES +Y Q +GRGLRL GK +++D+ GN Sbjct: 477 IFCVDLFNEGVDIPGIDTVLMVRPTESPVVYLQQLGRGLRLKDGKERLVVIDFIGNHRSF 536 >UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MIT3_TALSN Length = 667 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 162/370 (43%), Gaps = 33/370 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LR YQ+E++ + L H + + L TG+GK+++ +L R L++A Sbjct: 59 IKLRDYQEESIQSVLEHLEKGHNRLGLSLATGSGKTVIFTQLIGRVPPRNGGANQTLIIA 118 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FS 112 H KELV Q + + I G + + S++S++ ++ F F Sbjct: 119 HRKELVEQAARHCRLAYPDKSIEIEMGANKASGAADITVASIRSLSSKDRIEKFDPSLFK 178 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I QY+Q L++ + P L+G++AT FR + Sbjct: 179 LVLVDEAHHI---VAPQYRQALSYFSLTKPSNNAPVLVGVSATFFRFDGLKL-------- 227 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 + +Y MI +L+ D SR+ S+G F+ L+ Sbjct: 228 -----GSAIDHIVYHKDYIDMIGEKWLSDA-IFTTVKTHVDLSRVARDSSGDFATRALSE 281 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 + + + + A+ R+ ++F +EH ++ DA IT +TP Sbjct: 282 AVNT-ATVNDVTVRSWLTHASDRRSTLVFCVDIEHVHQLTEAFRDNGIDARYITANTPRQ 340 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 R+ +E FK + L+N + T G D P++D + + RPT S SL Q++GRGLRL P Sbjct: 341 TRNEELEAFKRGEYPVLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPE 400 Query: 348 KTDCLILDYA 357 K +C I+D Sbjct: 401 KENCHIIDMV 410 >UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DW03_ZYGRO Length = 650 Score = 307 bits (786), Expect = 9e-82, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 163/369 (44%), Gaps = 34/369 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----RGRVLVLAHVK 59 LR YQQ +D L + +K + L TG GK+++ A L + R LVL H + Sbjct: 23 QLRDYQQHVIDKCLESLKDNKRRIGVSLATGGGKTVIFANLIKQLSQQTPHRALVLVHRR 82 Query: 60 ELVAQNHAKYQALGLEADI---FAAGLKRKESHGKVVFGSVQSVARNLDAFQG-EFSLLI 115 ELV Q + A I + + V+ SVQS+ R LD ++ + L+I Sbjct: 83 ELVLQAAQTIKKFMPLARIQIEMGKYVCQDVKDCDVIVASVQSLIRRLDNYESTDIDLVI 142 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H + Y +IL H K P ++G +AT R + Sbjct: 143 VDEAHHA---VANSYLRILDHFKKDIP---VVGFSATFERADHKALST------------ 184 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + + +Y + MI +L + + + S +A + F L+R + + Sbjct: 185 -VMDEIVYHKGILEMINDNWLCEGKFTTVKIDADLNSVERASGSDDFKLDQLSRVMNIPE 243 Query: 236 RITPHIISQIMEFAATRKG----VMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 I ++ + + + G ++FA ++H K + L + A +T +T ER Sbjct: 244 -INGLVLKTYLHKSKEQPGGFNSTLLFAVDIKHVKALHHLFVSYGIKAECVTSETKARER 302 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 D +I+NFK + L+N + T G D P +D I + RPT S SL Q++GRGLRL K Sbjct: 303 DQIIDNFKKGDVKVLINCGIFTEGTDMPGIDCILLCRPTRSRSLLVQMIGRGLRLHHSKD 362 Query: 350 DCLILDYAG 358 C I+D+ G Sbjct: 363 FCHIIDFVG 371 >UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YK43_ANASP Length = 681 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 108/432 (25%), Positives = 182/432 (42%), Gaps = 44/432 (10%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 I+ LR YQ + + N ++R + LPTGAGK++ A + + + +VLV+AH Sbjct: 7 IYELRNYQHQWIKDIWNSWKRGNRRVLAQLPTGAGKTICFAHICQKFFQKQQKVLVIAHR 66 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN-LDAFQGEFSLLIVD 117 EL+ Q K + + E G ++ S+Q++AR + LL+ D Sbjct: 67 IELITQAAEKLEQIVGEPVGIIKGGCAAHPERRIQVASIQTLARRDILELPLNIGLLLFD 126 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H S Y++++ H + ++LG+TATP R+ + L Sbjct: 127 EAHH---SSASSYRRLIEHYQEA----QILGVTATPQRIDGQ-------------GFQEL 166 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F D + + +IK GYL+ +S G F +L + Q + Sbjct: 167 FDDLVVGISTSTLIKEGYLSKFRLFTTNQTISTIG--VKKSRGDFRAKELAVAVTSQIGV 224 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 I +++A + V IFA ++EH++ + A + G+TP R ++E Sbjct: 225 -DEIFQNYLKYAKNLRTV-IFACSLEHSRALAAKFRRNGIKAEHLDGETPPELRVQILER 282 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + + N +LT G+D P+++ I +RPTES +L+ Q+ GR LR K +I+D Sbjct: 283 FRGGETQVITNYEILTEGYDCPNIECIYCVRPTESSTLWLQMTGRVLRTHTLKPTAVIID 342 Query: 356 YAGNPHDLYAPE------VGTPKGKSDNVPVQVFCPACGFA--------NTFWGKTTADG 401 N P+ + + + + CP C A G+ DG Sbjct: 343 VTDNWKKHGLPDEQRQWSLEAKTLTASSSLGLIQCPHCTHAFKPLSHELAIVDGEIGEDG 402 Query: 402 TLIEHFGRRCQG 413 LIEH C Sbjct: 403 LLIEHHEAICPN 414 >UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax=Gammaproteobacteria RepID=A1SXM9_PSYIN Length = 967 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 92/380 (24%), Positives = 162/380 (42%), Gaps = 28/380 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA+ A + ++VL TG GK+ + A ++ +L R+L +AH +E++ Q Sbjct: 226 QIEALTALVKSREIGFKRGLVVLATGMGKTWLAAFDVLQLKAKRILFVAHREEILLQAQR 285 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 + L E + ++ V+F SVQ++ R +L F + F ++VDE H Sbjct: 286 TFAQLMPEKSSGFYNAQNRQKGADVLFASVQTIGRENHLQQFSKDHFDYVVVDEFHHAS- 344 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y +L + NP LLGLTATP R + I + + +YE Sbjct: 345 --APVYSNLLAYF---NPDF-LLGLTATPERTDQSDILCLCDNNL------------VYE 386 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I L P + + ++ + + NG F ++ + Q+R HI+ + Sbjct: 387 RNLTQGIDDKILAPFKYYGIWDESVNYQAIPWR-NGRFDPESIDNQFATQKR-ASHILKK 444 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGA-ERDVLIENFKAQRFRY 303 +F ++ + F +V+HA + ++ + R+ + + Sbjct: 445 WHQF--KQQKTLAFCISVKHADYMAESFNNAGIKAVSVHSKSEIRRNEALTQLQNGTLEV 502 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 + +V + G D P +D I +LRP+ S L+ Q +GRGLRL KT ++LD+ GN H Sbjct: 503 MFSVDLFNEGTDLPALDTILMLRPSNSKILFLQQLGRGLRLHKNKTHLVVLDFIGNHHSF 562 Query: 364 YAPEVGTPKGKSDNVPVQVF 383 + V ++ Sbjct: 563 LNKPYALFGSSTIPVLIKKV 582 >UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZP0_9BACT Length = 950 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 153/361 (42%), Gaps = 30/361 (8%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNH 66 P Q E + + A+ +L TG GK+ + A R RVL LAH +E++ Q Sbjct: 326 PLQDEVLLSLAELRADGARRALAILATGLGKTYLAAFDCR-GFSRVLFLAHRREILEQAR 384 Query: 67 AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIG 123 + + E + G +VF VQ++AR L E F ++VDECH Sbjct: 385 ETFFRVHPEKPASVVSEGEADVSGDLVFAQVQTLARPSRLLNIPPETFDYIVVDECHHA- 443 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 E Y++IL H +LGLTATP+R+ G I+ + Sbjct: 444 --EAPSYRRILDHFRPKF----VLGLTATPYRMDNGDIFALMD------------GHVVC 485 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 I+ G L P + D+ + + G + L R L + R + Sbjct: 486 RRTFIEGIRGGMLVPFHYFGLKDT-VDYETIPWR-GGRYDPEALERAL-TESRRAQETLR 542 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRF 301 E + + F + HA+ + E A +TG+TP ER ++ F+ Sbjct: 543 AFREHEGS--KTVAFCVSRLHARLLAEFFSREGIAAGHLTGETPSGERREILRKFREGSL 600 Query: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361 L V +L G D P +D + +LRPT+S +++ Q +GRGLRLAPGK ILD+ GN Sbjct: 601 SILFVVDLLNEGVDIPEIDRVMLLRPTDSPTVFLQQIGRGLRLAPGKGHLTILDFIGNHK 660 Query: 362 D 362 Sbjct: 661 R 661 >UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYC9_ALIAD Length = 581 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 169/372 (45%), Gaps = 32/372 (8%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL------ARGRVLV 54 M LRPYQQ AVDA + +IVLPTGAGK++V +AR +LV Sbjct: 1 MAIQLRPYQQAAVDAFFQALAEGRKRQLIVLPTGAGKTIVFGSVARRFHEEVSRERPILV 60 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEFS 112 +AH EL+ Q K + EA I R E G V+ S Q++ R + + Sbjct: 61 IAHRTELLDQAEQKIHFVWPEAFIGRIQGARNEQLGDVLLASTQTLVAGRRI----PQPG 116 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+I DECH + + L P LLG+TATP R + + Sbjct: 117 LIIYDECHHSRAEGALGVLERLGVFESDGP--PLLGVTATPSRSDRTELGD--------- 165 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 +F YE + MI GYL+ + + V + ++ + G ++ DL+ + Sbjct: 166 ----IFEHLTYERTILDMIMDGYLSDVRGVKVEVPGLNLGAIRTTA-GDYNSKDLSYVMN 220 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERD 290 + + ++ ++ A RK ++FA V+HA + A + G ER Sbjct: 221 IESALDA-VVDAVVTHAPGRK-CLVFAVDVKHAHALAERFQKRGIACAAVDGAMKAEERA 278 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 +++ F R LVN +LT G+D P VD + I RPT S +LY Q+VGR LRL P KTD Sbjct: 279 AILQAFAENRLCVLVNCQILTEGYDQPDVDCVVIARPTRSQALYVQMVGRALRLHPDKTD 338 Query: 351 CLILDYAGNPHD 362 L+LD G D Sbjct: 339 ALVLDLTGASDD 350 >UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cellular organisms RepID=B1IDR5_CLOBK Length = 1002 Score = 304 bits (778), Expect = 8e-81, Method: Composition-based stats. Identities = 91/404 (22%), Positives = 168/404 (41%), Gaps = 49/404 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+ + +++ TG GK+ + EL R L + H +++ Q Sbjct: 260 QVEAIQGLEKLRENGQDKGLLISATGTGKTYLSAFELRNYNPKRALFIVHREQIAKQALN 319 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIG 123 ++ G + K+ +F ++Q+++++ L +F + EF +I+DE H+ G Sbjct: 320 SFRNVFGDTRSMGILSGTSKDVDKDFIFCTIQTLSKDEVLQSFGKNEFDYIIIDEVHKAG 379 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 + YQ+I+ + NP LLG+TATP R I++ + + Y Sbjct: 380 ---ANSYQKIVNYF---NPKF-LLGMTATPERSDDFDIFKMFNY------------NIAY 420 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ L P + V D L +++ + A+ HII Sbjct: 421 EIRLQRALEEDLLCPFHYFGVSDVTIDGIELDDKTDFKYLVAE---------ERVKHIID 471 Query: 244 QI--MEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFKAQ 299 +I + R +IF + + AKE+ + + + TG++ ER+ IE + Sbjct: 472 KINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVGLTGESSQEEREKAIERLEQD 531 Query: 300 R----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR K +I+D Sbjct: 532 ETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTKSSIIFVQQLGRGLRKNKFKEYVVIID 591 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPV--------QVFCPACGFAN 391 + GN + + + ++ N P C N Sbjct: 592 FVGNYNSNFLIPIALSGDRTFNKDTIRKYVMEGTRVIPGCSTIN 635 >UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QJS8_PENMQ Length = 666 Score = 304 bits (778), Expect = 8e-81, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 162/370 (43%), Gaps = 33/370 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LR YQ+E++ + + + + + L TG+GK+++ +L R L++A Sbjct: 59 IQLRDYQEESIQSVIENLGKGHNRLGLSLATGSGKTVIFTQLIHRIPPRNGRADQTLIIA 118 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFS 112 H KELV Q + + + G + + S++S+A ++ F F Sbjct: 119 HRKELVEQAARHCRLAYPDKTVEIEMGATKASGAADITVASIRSLASKGRIEKFDPSYFK 178 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I QY+Q L + P L+G++AT FR + Sbjct: 179 LVLVDEAHHI---VAPQYRQALEYFGLTEPSNNAPALVGVSATFFRFDGLKL-------- 227 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 ++ +Y MI +L+ D SR+ S+G F+ L+ Sbjct: 228 -----GSVIDHIVYHKDYIDMIGEKWLSDA-IFTTVKTNVDLSRVAKDSSGDFATRALSE 281 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGA 287 + + + + A+ R+ ++F +EH +++ DA IT +TP Sbjct: 282 AVNT-ATVNDVTVRSWLTHASDRRSTLVFCVDIEHVRQLTEAFRDNGIDARYITANTPRQ 340 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 R+ +E FK + L+N + T G D P++D + + RPT S SL Q++GRGLRL P Sbjct: 341 TRNEELEAFKKGEYPVLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPQ 400 Query: 348 KTDCLILDYA 357 K +C I+D Sbjct: 401 KENCHIIDMV 410 >UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFJ4_CALS8 Length = 899 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 99/387 (25%), Positives = 168/387 (43%), Gaps = 35/387 (9%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQN 65 R Q EA+ A++V TG GK+ + A + VL +AH +E++ Q Sbjct: 289 REAQTEALYWLKKCREEGLDRALVVAATGIGKTFLAA-FDSIGFKTVLFVAHREEILRQA 347 Query: 66 HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQGEFS-LLIVDECH 120 ++ + A I RKE+ ++F SVQ++ + N F ++ +I+DE H Sbjct: 348 ALSFKTIRSNATIGFFTGDRKETEKDIIFASVQTLGKEEYLNPTYFSSDYFEYIIIDEFH 407 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 YQ I+ + LLGLTATP RL +++ + + Sbjct: 408 HA---VAKSYQNIINYFKPKF----LLGLTATPERLDNKDVFELCNY------------N 448 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 +YEL L+ I GYL P + + DFS++ + NG + E +L + L +R Sbjct: 449 VVYELRLKDAINKGYLVPFHYYGIYD-ETDFSQIP-EINGKYKEDELEKVLMIHKR-ADL 505 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGA--ERDVLIEN 295 I+ ++F ++ + F + HA+ + A+ +G+ +R I Sbjct: 506 ILKNYLKF--NKQKTLAFCCSRNHAEFMADYFNKNGVKCCAVYSGEQGKNALQRSEAIRK 563 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 K + + + V + G D P +D++ LRPTES +++ Q +GRGLR A K +LD Sbjct: 564 LKNGQIKVIFTVDMFNEGVDIPEIDMVMFLRPTESPTVFLQQLGRGLRKAKNKNYLTVLD 623 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQV 382 + GN G+ D +Q Sbjct: 624 FIGNYKRANLIPFLLSTGEYDIEKIQK 650 >UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA helicase domain n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GIH0_ANOFW Length = 1059 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 172/381 (45%), Gaps = 32/381 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q++A+ + + T VI+ TG GK+ + A ++ ++L +AH +EL+ + Sbjct: 316 QKKALKNLEHTRKNGNTKGVIIAATGTGKTYLAAFDVKAYNPKKLLFIAHREELLDKAIE 375 Query: 68 KYQALGLEADIFA-AGLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRIG 123 ++ + +F K+ +F +VQS++++ L+ F+ EF +I+DE H Sbjct: 376 TFKHVIENDHLFGKITGTVKQFDKPYLFSTVQSLSKDETLNRFKQHEFDYIIIDEFHHA- 434 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 E YQ+++ + LLGLTATP R+ + H + +Y Sbjct: 435 --EAPTYQKVIRYFRPKF----LLGLTATPERMDGRDVLAICDH------------NVVY 476 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ LR + L P + D+S++ + NG+F EA L + LK +R T II Sbjct: 477 EIRLREALDAQLLAPFHYFGISDRTVDYSQIPLK-NGMFDEALLVKALKTNER-TDFIIE 534 Query: 244 QIMEFAATRKGVM--IFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQ 299 I ++ ++ F ++HAK + +TG+ R+ +I+ + Sbjct: 535 MIRTYSYDGDRIVGLAFCVNIDHAKYMSEQFNKRGYCTTYLTGEHSVEYREQIIKRLENP 594 Query: 300 R--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 ++ V + G D P ++L+ LRPTES +++ Q +GRGLR GK +LD+ Sbjct: 595 DDPLEFIFTVNIFNEGIDIPSLNLLLFLRPTESSTVFIQQLGRGLRKVEGKEFVTVLDFV 654 Query: 358 GNPHDLYAPEVGTPKGKSDNV 378 GN + + +D Sbjct: 655 GNYQKSFMIPLALAGQLNDKA 675 >UniRef50_Q6J7X8 Pas53 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q6J7X8_9CAUD Length = 567 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 119/405 (29%), Positives = 174/405 (42%), Gaps = 29/405 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARGRVLVLAHVK 59 + LRPYQ++A++ R ++VLPTG GK++V + R RGR LVL H Sbjct: 1 MLGLRPYQEKALEGIEKAEREGVRRPLVVLPTGTGKTVVFSHGIKNRADRGRSLVLVHRD 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQS--VARNLDAF-----QGEFS 112 ELV Q K + E VV SVQ+ V R L + F Sbjct: 61 ELVRQTIEKIGMVAPELTTGVVKADENGLDADVVVASVQTAQVDRRLAQLVEAAKRSPFG 120 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL-LGLTATPFRLGKGWIYQFHYHGMVR 171 + VDE H + ++LT L NP+ L +G TATP R K + + Sbjct: 121 TVWVDEAHHA---PAPSWTKVLTGLGSFNPYGPLTVGFTATPER-DKKTLGVWERLAAFM 176 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 +A++ + + + GYL P + + D +R++ ++ G FSE DL RE+ Sbjct: 177 SIREAIYGN---GKRGKDGHEGGYLVPILPAVVVETEMDLTRVR-KTGGDFSEGDLGREM 232 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 ++ I I + A RKGV F TV A + L A + G T ER Sbjct: 233 EESGAIA-QIADAYLINAHDRKGV-AFTPTVATAHALAAALCARGIRTEALDGTTHKDER 290 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 ++ K + + N VLT GFD P + + + RPT+ LY Q++GRG RL PGK Sbjct: 291 RAILRRLKTGETQVVTNCGVLTEGFDEPSISCVVVARPTKFHGLYVQMIGRGTRLYPGKK 350 Query: 350 DCLILDYAGNPHDL-------YAPEVGTPKGKSDNVPVQVFCPAC 387 D +ILD ++ K + P + CP C Sbjct: 351 DLMILDLVAASRRHEFVGYVDLGLDLDEGKKPKEGEPERQACPTC 395 >UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Saccharomyces cerevisiae RepID=IRC3_YEAST Length = 689 Score = 302 bits (773), Expect = 3e-80, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 162/373 (43%), Gaps = 38/373 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG----------RVLV 54 LR YQQ+A+DA +N R+ + L TG GK+++ + L R + L+ Sbjct: 33 LRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLI 92 Query: 55 LAHVKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEF 111 L H +EL Q A + + L+ I V+ SVQ++ R L + Sbjct: 93 LVHRRELALQATATLKKIFPDLKVHIEMGKYDCDIEDSDVIVASVQTLIRRLHKYDTNSV 152 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 +L+I+DE H + Y+ IL H + ++G +AT R K + Sbjct: 153 NLIIIDEAHH---SVANSYRSILDHFKASTAETKIPVIGFSATFERADKRALSM------ 203 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 + +Y + MI +L + + + + D S +++ ++ F A L+ Sbjct: 204 -------VMDKIVYHRGILEMIDDKWLCEAKFTSVKI-EADLSDVKSTAD-DFQLAPLS- 253 Query: 230 ELKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLL--PAEDAALITGDTP 285 L + I I+ + + K ++F H + + L + +T DT Sbjct: 254 SLMNTKEINEVILKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTK 313 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ERD +I+ FK L+N + T G D P++D I + RPT+S SL Q++GRGLRL Sbjct: 314 QIERDNIIQKFKNGETEVLMNCGIFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRGLRLH 373 Query: 346 PGKTDCLILDYAG 358 K C I+D+ G Sbjct: 374 HSKDHCHIIDFIG 386 >UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisiae YDR332w n=1 Tax=Candida glabrata RepID=Q6FK44_CANGA Length = 682 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 161/376 (42%), Gaps = 37/376 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---------VLVL 55 LR YQ +A+ + L+ K + L TG GK+++ + L L R R L+L Sbjct: 27 LRDYQNDAIKSCLDAIALGKKRIGVSLATGGGKTVIFSSLINLLRQRNRGNACRFRTLIL 86 Query: 56 AHVKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFS 112 H +EL Q + + +I S+ V+ SVQS+ R L + +G+ Sbjct: 87 VHRRELAEQAVRTTSRINEDLNIQLEMGNQNCDVSNSDVIVASVQSIIRRLHKYREGDID 146 Query: 113 LLIVDECHRIGDDEESQYQQILTHL--TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 L+I+DE H D Y+++L H N + ++G +AT R K + Sbjct: 147 LIIIDEAHHAAAD---SYKKVLKHFRCDTANTRIPVIGFSATFERYDKKSL--------- 194 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS-NGLFSEADLNR 229 K F + +Y + MI +L + ++ D S++ + F L+R Sbjct: 195 ----KESFDELVYHRGIIEMIDDNWLCESK-FTTVRLEVDLSKIPTSTLTSDFQTGALSR 249 Query: 230 ELKKQQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 L Q + I + +E K ++F + H + + A ++ T Sbjct: 250 LLNTQT-VNSIIYNSYLEKRKENNIKSSLLFGVDINHIECLERYFNERGIKAKAVSSKTS 308 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 +R I + K+ L+N + T G D P++D I + RPT+S +L Q++GRGLRL Sbjct: 309 VEDRQKAIRDIKSGELEVLLNCGIFTEGTDIPNIDCILLCRPTKSRTLLVQMIGRGLRLH 368 Query: 346 PGKTDCLILDYAGNPH 361 K C I+D+ G+ Sbjct: 369 HSKEYCHIIDFVGSTK 384 >UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMW9_FERNB Length = 848 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 96/364 (26%), Positives = 170/364 (46%), Gaps = 35/364 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 QQE + N T A++VL TG GK+ + A + RV +AH +E++ Q + Sbjct: 243 QQEVLRELNNTRAEGFTKALVVLATGVGKTFLAA-FDSMQFNRVFFIAHREEILKQAKST 301 Query: 69 YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQGE-FSLLIVDECHRIG 123 ++ + + + K++ +VF SV ++ + N D F + F +I+DE H Sbjct: 302 FEKVRPTSRMGFFTSSGKDTDADIVFASVFTIGKEEYLNDDYFPPDYFDYIIIDEFHHAA 361 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 + Y+++L++ NP LLGLTATP R+ +++ + + +Y Sbjct: 362 AE---SYKKLLSYF---NPKF-LLGLTATPERMDGKDVFEICDY------------NVVY 402 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 +L L I GYL P + + DFS++ +G + E +L + L +R ++ Sbjct: 403 DLRLPDAINRGYLVPFHYYGIYD-ETDFSKIPII-DGHYKEDELEKALMLHKR-ADLVLQ 459 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAE---RDVLIENFKA 298 + +++ RK + F + HA+ + +A + G R IE K Sbjct: 460 KYVKYG--RKRAIGFCVSRNHAEYMADYFNKNGVNACAVYSGEQGRNALPRWEAIEKLKN 517 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + + V V G D P ++++ LRPTES +++ Q +GRGLR A GK ++LD+ G Sbjct: 518 REIDVIFTVDVFNEGVDIPEIEMVMFLRPTESTTVFIQQLGRGLRKAKGKKYLIVLDFIG 577 Query: 359 NPHD 362 N + Sbjct: 578 NYKN 581 >UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6CMW9_KLULA Length = 690 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 163/369 (44%), Gaps = 35/369 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-------VLVLAH 57 LR YQQ+ ++ ++ + K + L TG GK+++ + L R L+L H Sbjct: 53 LRDYQQDCINKCVDAVTQGKMRIGVSLATGGGKTVIFSNLLDRFRSLGAHSSRAALILVH 112 Query: 58 VKELVAQNHAKYQALGLEAD--IFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLL 114 +EL Q + + + + L VV GSV ++ R L+ + + L+ Sbjct: 113 RRELAMQAASTISKFMPDLNVQMEMGKLHANLEEADVVIGSVLTMVRRLEEYPPDSIDLI 172 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNP--HLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++DE H D Y ++L H P + ++G +AT R K + Sbjct: 173 VIDEAHHAVAD---SYVKVLAHFNADTPATRVPVIGFSATFERADKRALS---------- 219 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 A+ + IY + MI +L + V D S+++ N F L++ + Sbjct: 220 ---AVMDEIIYHKGILEMIDENWLCEGK-FTTVDVGVDLSKVK-SVNSDFQLEGLSKVMN 274 Query: 233 KQQRITPHIISQIM--EFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAE 288 ++ I +++ + + K ++FA V H K + +A +TG T E Sbjct: 275 TKE-INEIVLNTYLHKKKLHNLKSTLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGE 333 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 RD ++ +FK + + L+N + T G D P+VD + + RPT+S SL Q++GRGLR K Sbjct: 334 RDSIVSDFKNGKIQVLMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSK 393 Query: 349 TDCLILDYA 357 C I+D+ Sbjct: 394 EHCQIIDFV 402 >UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax=Bacillaceae RepID=C5D556_GEOSW Length = 1053 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 96/375 (25%), Positives = 163/375 (43%), Gaps = 32/375 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q++A+ + + VI+ TG GK+ + ++ ++L +AH +EL+ Sbjct: 310 QEKALRNLQHTRKNGNNKGVIIAATGTGKTYLSAFDVKAFNPKKLLFIAHREELLDNAIK 369 Query: 68 KYQALGLEADIFA-AGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIG 123 +Q + + +IF KE +F +VQS+ ++ L F + EF +I+DE H Sbjct: 370 TFQQVIPKKEIFGKITGTVKEFDKPYLFSTVQSLHKDEILKRFKRDEFDYIIIDEFHHA- 428 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 E Y++++ + LLGLTATP R+ + H + +Y Sbjct: 429 --EAPTYRKVIDYFQPKF----LLGLTATPERMDGRDVLALCDH------------NIVY 470 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ LR ++ L + D+S++ + NG F E L + LK +R T II Sbjct: 471 EIRLREALEANLLASFHYFGVSDHTVDYSKIPLK-NGFFDEDALVKALKTNER-TDFIIE 528 Query: 244 QIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK-- 297 I + R + F +EHAK + +TG+ R+ +I+ + Sbjct: 529 MIKTYGYHGDRMIGLGFCTNIEHAKYMSEEFNKRGYHTTYLTGEHSIDYREKVIKQLEDE 588 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + V + G D P ++LI LRPTES +++ Q +GRGLR GK ILD+ Sbjct: 589 NHPLELIFTVNIFNEGIDIPKLNLILFLRPTESSTVFIQQLGRGLRKVEGKEFVTILDFI 648 Query: 358 GNPHDLYAPEVGTPK 372 GN + + Sbjct: 649 GNYQKSFVVPLALSG 663 >UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax=Corynebacterium RepID=C6R8F6_9CORY Length = 1040 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 100/380 (26%), Positives = 172/380 (45%), Gaps = 36/380 (9%) Query: 4 TLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLA------RGRVLVLA 56 T PYQ+E ++A + + + ++V TG GK++V A R R R+L +A Sbjct: 317 TPYPYQEEMLEALRSEREVKDRHRNLLVAATGTGKTVVAALDYRNLCEQWKRRPRLLFVA 376 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVA--RNLDAFQGEFSL 113 H KE++ Q +Q + +AD + + VF SVQS++ R + F + Sbjct: 377 HRKEILQQARRTFQEVLKDADFGELLVDGAEPRRWDYVFASVQSLSASRLQNLNSKHFDV 436 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE H + Y+ +L HL LLGLTATP R + ++ + Sbjct: 437 VVIDEFHHA---QAPTYKALLDHLQPQE----LLGLTATPERGDGENVQKYFDY------ 483 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA-QSNGLFSEADLNR-EL 231 +EL L ++ L P + D S L + ++ +L+ + Sbjct: 484 ------RVAHELRLWDALRLQLLVPMHYYGIAD-GTDLSSLTWSREKKDYNTEELSEFYI 536 Query: 232 KKQQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 K ++ T I++++ F + + F T+ HA+ + A +T D Sbjct: 537 KAGEKRTRFIVNELNRRIFDLSDMKAIGFCVTIAHAEYMARQFQHFGIPARAVTSDLTAT 596 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER I++ + + L +V + G D P V+ + +LRPT+S ++ Q +GRGLRL+PG Sbjct: 597 ERAQAIKDLENGDVKVLFSVDIFNEGVDIPAVNTLLLLRPTQSPVVFLQQLGRGLRLSPG 656 Query: 348 KTDCLILDYAGNPHDLYAPE 367 K C+ILD+ G H + E Sbjct: 657 KDSCVILDFIGQQHVDFDFE 676 >UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase irc3 n=2 Tax=Schizosaccharomyces RepID=IRC3_SCHPO Length = 606 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 110/375 (29%), Positives = 169/375 (45%), Gaps = 33/375 (8%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLV 54 LRPYQ+E + A LN F K + L TG+GK+ + + A + L+ Sbjct: 23 FALKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLI 82 Query: 55 LAHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEF 111 L H KEL Q + I G + V SV S+ R L F Sbjct: 83 LVHRKELALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLLKYNPLNF 142 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIYQFHYHGM 169 LLI DE H + Y +IL H + ++ +GLTAT FR + Sbjct: 143 KLLIFDEVHHMAS---PSYLRILEHFGAESEKSKVNVIGLTATLFRADGKGLACG----- 194 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 + +Y MIK +L P+ +++ ++ + A S+ + L + Sbjct: 195 --------LDEIVYHRHFVDMIKDNWLVEPKVINI---KWSTDLVLADSSSFLDQEKLKK 243 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGA 287 E + ++ I I +E A+ R ++F VEH+ ++ DA + G+T + Sbjct: 244 EAQSEKAIFE-IPRAWLEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDS 302 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER+ LI++F+ ++F LVN VLT G D P++D + I RPT S +L Q++GRGLRL G Sbjct: 303 ERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMIGRGLRLHEG 362 Query: 348 KTDCLILDYAGNPHD 362 K DCLILD+ + Sbjct: 363 KRDCLILDFCDSLRR 377 >UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EF5_PEDPA Length = 950 Score = 298 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 167/379 (44%), Gaps = 38/379 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHA 67 QQ A+ A +N + +I+ TG GK+ + A R R R L + H ++++ + Sbjct: 220 QQAALKALINLRSEGQKRGLIISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALL 279 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQ-GEFSLLIVDECHRI 122 ++ + G D KE K VF ++Q+++R L+ + F +++DE H+ Sbjct: 280 SFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLSRPDILNELKANTFDYILIDEAHKA 339 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ+I+ H LLG+TATP R IY+ + Sbjct: 340 G---AASYQKIINHFKPEF----LLGMTATPERTDDFNIYELFDY------------HIA 380 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ I+ L+ + + +Y+ + + + L ++R+ ++ Sbjct: 381 YEIRLQDAIEEKMLSEFHYIGITDYEYEGQVITDNTP--------LKHLVSRERM-DYVE 431 Query: 243 SQIMEFAATRKGVM--IFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 QI + V IF + E A E+ ++ + +TG+ R+ I+ F+ Sbjct: 432 QQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVDNREATIKKFEN 491 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 YLV V + G D P ++ + +LR TES ++ Q +GRGLR + GK I+D+ G Sbjct: 492 GEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEGKDFVTIIDFIG 551 Query: 359 NPHDLYAPEVGTPKGKSDN 377 N + Y + ++ N Sbjct: 552 NYQNNYMIPIALTGDQTLN 570 >UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax=Proteobacteria RepID=C4ZJT0_THASP Length = 1287 Score = 297 bits (761), Expect = 7e-79, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 160/375 (42%), Gaps = 28/375 (7%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARGRVLVLAHVKELVAQN 65 P QQEA+ A ++VL TG GK+ + A A ++ RVL +AH +E++ Q Sbjct: 402 PIQQEALAALTRTRHDGYLRGLVVLATGLGKTWLAAFDAEQIGARRVLFVAHREEILKQA 461 Query: 66 HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRI 122 + + A I + +++ V+ SVQ++ RN L+ F + F +I+DE H Sbjct: 462 ADTFVRIRPRARIGFYMGQARDTQVDVLCASVQTLGRNAHLERFAPQHFDYIIIDEFHHA 521 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 Y+++L H LLGLTATP R + I +V ++ LF Sbjct: 522 A---APTYRRLLAHFAPQF----LLGLTATPDRTDQSDILSLCDDNLVL--DRNLFA--- 569 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 I+ G L P + D+ + + NG F L+ +L R H + Sbjct: 570 -------GIEAGLLAPFHYFGVWDASVDYEEIPWR-NGRFDPEKLSNKLATLAR-ARHAL 620 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA-ALITGDTPGAERDVLIENFKAQRF 301 + + A R + F +V HA+ + + A R +E R Sbjct: 621 KEWRKRAQQR--TLAFCVSVRHAEFMATQFRLQGIEAAAVYAGSELARGEALEQLAEGRL 678 Query: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361 + +V + G D P +D + +LRPTES L+ Q +GRGLR A GK ++LD+ GN H Sbjct: 679 AVIFSVDLFNEGVDLPAIDTVLMLRPTESKILFLQQLGRGLRRAEGKERLVVLDFIGNHH 738 Query: 362 DLYAPEVGTPKGKSD 376 + S Sbjct: 739 SFLHKPQALGQIGSG 753 >UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6BK09_DEBHA Length = 704 Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 168/374 (44%), Gaps = 36/374 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-------GRVLVL 55 LR YQ EA+ + N R + +VL TG GK++V + L + + LVL Sbjct: 38 LKLRDYQVEAIKSVHNAISRGINRSAVVLATGGGKTVVFSHLISQIKPSTPDRGNKTLVL 97 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVAR--NLDAFQG-EF 111 AH +ELV Q + + K + S+ V+ SV ++ R L + EF Sbjct: 98 AHKEELVRQAADSIAEINPNLKVDIDMRKLKPSSNADVIVASVPTLIRMSRLSKYDPKEF 157 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPH--LRLLGLTATPFRLGKGWIYQFHYHGM 169 +I+DECH + + +IL + P + ++G TAT R + + Sbjct: 158 KTIILDECHHA---PANSWSKILQYFEAHTPQSQIYVIGFTATMERSDGKSLAE------ 208 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 +F + ++E L M+++ L R V D +++ + N + L++ Sbjct: 209 -------IFDEIVFERNLLEMVQNKELADV-RFSSIDVDVDLTKVATKKN-DYEINSLSQ 259 Query: 230 ELKKQQRITPHIISQI--MEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTP 285 + + + + ++ K +IF + H K + G+ E +A +TG+T Sbjct: 260 AMNDSE-VNLLVALSYSQLQKEFNFKSTLIFCVDISHCKTLCGVFQREGINAQYVTGETA 318 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER +IE+FK L NV V T G D P++D + + RPT+S L Q++GRGLRL Sbjct: 319 KHERQAIIEDFKKGIIEVLCNVQVFTEGTDIPNIDSLFLARPTKSRPLLVQMIGRGLRLH 378 Query: 346 PGKTDCLILDYAGN 359 KT C ++D AG Sbjct: 379 KSKTHCHVVDIAGT 392 >UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=D2MPK0_9FIRM Length = 528 Score = 297 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 119/399 (29%), Positives = 185/399 (46%), Gaps = 42/399 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVK 59 LRPYQ+EA A + ++VLPTG GK++V +++ RVLV+AH Sbjct: 1 MELRPYQEEARRAIEKEWASGVKNTLLVLPTGCGKTVVFSKVIEDQVKEGKRVLVMAHRG 60 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 EL+ Q K + GL I A + +VV GSVQS+ R L F + F +I Sbjct: 61 ELLDQATDKLHKMTGLTCAIEKADQSCLGTWNRVVVGSVQSLMRPSRLAKFNKDYFDAII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H D Y ++L H + N +LG+TATP R + Sbjct: 121 VDEAHHAVSD---TYTRVLEHFDQAN----VLGVTATPERSDMRKL-------------G 160 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 +LF+ YE + IK GYL + +P+ + D + + G FS ++ L Sbjct: 161 SLFQSLAYEYSIVQAIKEGYLCKIKAQTVPL-KIDMNNVSVTV-GDFSANEIGTAL---D 215 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 I +++ RK V +F + +++ +L + +R+ ++++ Sbjct: 216 PYLEQIATEMETVCKDRKTV-VFLPLIATSQKFKNILINHGFKAAEVNGNSDDREQILKD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F ++ + N +LT G+D P VD I +LRPT+ SLY Q+VGRG RL+PGK D LILD Sbjct: 275 FNDNKYNVICNSMLLTEGWDCPDVDCIVVLRPTKVRSLYCQMVGRGTRLSPGKEDLLILD 334 Query: 356 Y--AGNPHDLYAP------EVGTPKGKSDNVPVQVFCPA 386 + H+L P + K ++N+ + CP Sbjct: 335 FLWLSERHELCRPADIICTDKEVSKKMTENL-AESGCPE 372 >UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P241_USTMA Length = 775 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 101/393 (25%), Positives = 167/393 (42%), Gaps = 52/393 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-------GRVLVL 55 F+LRPYQ+E + L+ T + PTG+GK+ + L RV ++ Sbjct: 88 FSLRPYQEECIQDCLSALDCGVTRIGVSSPTGSGKTTIFTHLIDRLPPRSDTGGQRVAII 147 Query: 56 AHVKELVAQNHAKYQALGLE--ADIFAAGLKRKESHGKVVFGSVQSVAR---NLDAFQGE 110 + EL Q ++ E +I R V + Q++ R LD F + Sbjct: 148 VNSIELALQAANAVTSMFPEKSVEIEQGSKYRASGMADVTVATYQTLNRSQQRLDKFDPD 207 Query: 111 -FSLLIVDECHRIGDDEESQYQQILTHLTKV---------------NPHLRLLGLTATPF 154 F ++VDE H Y ++L+H + + ++G +AT Sbjct: 208 EFKAVVVDEAHHAA---APSYLKVLSHFDPLIGLGLEQRQGQCSVPTASVPVIGFSATFS 264 Query: 155 RLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL 214 R + +F ++ MI +L P + D + + Sbjct: 265 RHDGLAL-------------GKVFDRIVFHKDFLEMIGEKWLCPIRFTSIK-ADIDLASV 310 Query: 215 QAQS-NGLFSEADLNRELKKQQRITPHIISQIMEFAAT-RKGVMIFAATVEHAKEIVGLL 272 + + N F+ + L + + + I+ ++ A R+ +IFA +EH +E+ Sbjct: 311 KISNLNSDFATSSLA-AVVNTEVVNKIILKAWIDRAHKHRRSTLIFAVNIEHVQELTNTF 369 Query: 273 P--AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 DA + G TP ER L+E+F+ + LVN A+LT G D P +D + + RPT S Sbjct: 370 RSAGIDARYLHGGTPMPERRQLLEDFRNGVYPVLVNCAILTEGADVPAIDCVLLARPTRS 429 Query: 331 VSLYQQIVGRGLRLAP--GKTDCLILDYAGNPH 361 +L+ Q++GRGLRL+P GK DCL+LD GN Sbjct: 430 RNLFSQMIGRGLRLSPKTGKKDCLVLDIVGNIE 462 >UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7S3_DESRM Length = 459 Score = 297 bits (760), Expect = 1e-78, Method: Composition-based stats. Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 55/427 (12%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHV 58 +F LRPYQ+ ++ + FR + IV P GAGK++++A +A + R VL H Sbjct: 1 MFKLRPYQELLIEGVRDEFRSGRRKTCIVAPCGAGKTVIMAWMAAQSATRGQSVLFAVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 +EL+ Q+ + A+G++ I A G + ++ GS+ +VAR LD +++I DE Sbjct: 61 QELIDQSSETFTAMGIQHGIIAPG--CSATGDQIQIGSIFTVARRLDRINPP-NVIIFDE 117 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + + + +++ P ++GLTATP R + +F Sbjct: 118 SHHA---KANTWVKLMEAF----PQAFVIGLTATPARTNGDGMGD-------------IF 157 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++ +I+ G LTP + P V+ + L+ + G + ++D+ + + + I Sbjct: 158 ESLVLGPSVKQLIEWGNLTPYKYF-APPVKANLDGLRVKY-GDYIKSDITLAMDRSE-II 214 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 I Q + ++ + + + H++ + A A I G+T R I+ F Sbjct: 215 GDAIEQYKKLTDGKRAI-AYCVSRAHSEHTAEMFRAAGIPAQHIDGETEQGVRKAAIDQF 273 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD--CLIL 354 + + L NV +++ GFD P ++ + +LRPT+S++L+ Q R +R D +I+ Sbjct: 274 RTGNIKVLCNVDLISEGFDVPAMEAVLLLRPTQSLTLHIQQSMRPMRPDKDNPDKVAIII 333 Query: 355 DYAGNPHDLYAPEVGTP-----KGKSDNVPVQV----------------FCPACGFANTF 393 D+ GN + P+ K K+ P +V CP CG+ Sbjct: 334 DHVGNCYRHGLPDEDRSWSLEGKKKNSTGPREVSLRQCPKCYAAHRPAPVCPLCGYQYAP 393 Query: 394 WGKTTAD 400 + D Sbjct: 394 TERAEPD 400 >UniRef50_B1MAA8 Type III restriction protein res subunit n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1MAA8_METRJ Length = 462 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 113/467 (24%), Positives = 180/467 (38%), Gaps = 65/467 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHV 58 + LR YQ AV + ++VLPTG GK++V + RV+VL H Sbjct: 1 MIQLRDYQSAAVARIREAYAERSRRILLVLPTGGGKTIVFCWIGAAVAARGKRVVVLVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 EL+ Q +G+E + AAG + V SV ++AR L A L+++DE Sbjct: 61 AELLEQVSKALAGMGVEHGLIAAGHP--TTEAAVQVASVATLARRLAAGFAPPDLIVIDE 118 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + +++ P +LG++ATP RL + + F Sbjct: 119 AHHA---VAGTWNRVID----AAPESFVLGVSATPARLDGRGL-------------GSAF 158 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + + + G+L P P + D S+++ ++ G + L + I Sbjct: 159 DVMVEGPTVAELTAAGHLVPARVF-APPERLDLSKIKVRA-GEYDARQLAEAMAGGTLI- 215 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 ++ AA R V F A++EH++ + AA + G T AER LI Sbjct: 216 GDAVAHYRRLAAGRPAV-AFCASIEHSQIVAARFRGAGVAAAHVDGKTDAAERRRLIAGL 274 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 R L NV ++ G D P + + +LRPT S + Y Q VGR LR + GK++ ++LD+ Sbjct: 275 GTGELRVLTNVDLIGEGVDVPAIGAVILLRPTRSEARYLQSVGRALRPSAGKSEAIVLDH 334 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 AG P+ +L + RR G E Sbjct: 335 AGATWMHGLPDAPRA-----------------------------WSLADQPARRSTGRTE 365 Query: 417 DDDGHREQCDFRFRFK-----NCPQCNAENDIAARRCRECDTVLVDP 458 QC+ F+ C C A +E + LV+ Sbjct: 366 APGERLRQCEACGAFEPPGTPACGTCGASLKPCPAEIQEAEAELVER 412 >UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococcales RepID=A9G978_SORC5 Length = 557 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 183/363 (50%), Gaps = 29/363 (7%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LRPYQ+ AVDA L RR V+ LPTGAGK+++ + LARLAR +VLVLAH +EL+ Q Sbjct: 18 LRPYQRAAVDAVLAARRRGVRRMVVCLPTGAGKTVIFSHLARLARRQVLVLAHREELLFQ 77 Query: 65 NHAKY-QALGLEADI-FAAGLKRKESHGKVVFGSVQSV-ARNLDAFQG--EFSLLIVDEC 119 K +AL +A + G R + +V+ S++S+ + L+ G + L+I DEC Sbjct: 78 AKDKIERALAGQATVAVEQGELRAPADARVIVCSIRSLHEKRLEQVTGGRDIGLVIYDEC 137 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLR--LLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 H D+ +++L L +P LLG TAT R + + Sbjct: 138 HHAPADDN---RRVLRQLGAFDPAWTGTLLGFTATTARGDGKGLDD-------------V 181 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F +Y L MI GYL P + D S L A F+ +L + ++R Sbjct: 182 FEAIVYSRSLPEMIADGYLAPLTGYRVATAT-DLSPLAA-GGLDFATDELEEAVDMEER- 238 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIEN 295 + I E A R+ + F TV HA+ + L +A + GD P R ++ + Sbjct: 239 NALVARSIQELARDRRTI-AFCVTVAHARNLSKALNHLGVRSAYVHGDMPSDLRGRILAD 297 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ +R + L NVAVLT GFD P V IA+ RPT S LY Q VGRG RL PGK DCLILD Sbjct: 298 FREERVQVLTNVAVLTEGFDDPGVSCIAMARPTRSDGLYAQCVGRGTRLHPGKKDCLILD 357 Query: 356 YAG 358 + Sbjct: 358 FVD 360 >UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK35_9GAMM Length = 1066 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 166/378 (43%), Gaps = 38/378 (10%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL--------ARGR 51 F LRPY QQE ++ R +++ TG GK+++ A R R Sbjct: 331 FFDLRPYAFQQEILEDIRRERRSGIDRHLVIAATGTGKTMIAAFDYRRFAREQADKGRPS 390 Query: 52 VLVLAHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSV-ARNLDAFQG 109 +L +AH +E++ Q A ++ + + + + + S + +F +V S AR+LD Sbjct: 391 LLFIAHREEILRQAMASFRQVLQDHEFGDVLVGGARPSQDRHLFCTVASWNARDLDRLDP 450 Query: 110 E-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 E F +++DE H YQ+IL H+ LLGLTATP R I Q Sbjct: 451 EHFDYVVLDEAHH---SSAGSYQRILEHVRPK----CLLGLTATPERTDADDIRQHFG-- 501 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEADL 227 + +E+ L I+ L P + + D SR+ + G + +L Sbjct: 502 ----------QRYTHEIRLPDAIERRLLVPFHYFGVADHESVDLSRVSWRRGG-YDAEEL 550 Query: 228 NRELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGD 283 + ++ Q E A V F + HA+ + A+ +A++TGD Sbjct: 551 EGVFTGNRARADWVLQQAHEHATDLGSVRGLGFCISRAHARFMAEYFSAKQVPSAVLTGD 610 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 + ER + + + R R++ V + G D P VD + +LRPTES+++Y Q +GRGLR Sbjct: 611 SSDHERKSIQRDLREGRIRFIFTVDLYNEGVDLPEVDTVLLLRPTESLTVYLQQMGRGLR 670 Query: 344 LAPGKTDCLILDYAGNPH 361 L GK +LD+ H Sbjct: 671 LHEGKPHLTVLDFVAPQH 688 >UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFS4_EXIS2 Length = 1052 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 171/379 (45%), Gaps = 32/379 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q A++ + +T A+++ TG GK+ + A ++ + RVL +AH +L++Q Sbjct: 302 QLPALEQLHRLRLKQQTKAMVIAATGTGKTYLAAFDVKQFDAKRVLFVAHRGKLLSQAEE 361 Query: 68 KYQALGLEADIFAAGL--KRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 ++ + + D +K+ + +F ++Q+ ++ +L+ F F +I+DE H Sbjct: 362 TFKKIFTDGDATFGRYQANQKDLDKQFIFATIQTFSKEIHLEQFDPNTFDYIIIDEFHHA 421 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 + YQ+IL + T LLG+TATP R+ I++ H + Sbjct: 422 ASE---SYQKILNYFTPQF----LLGITATPERMDGLNIFKLVDH------------NIA 462 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L + LTP + + + Q NGL+ E DL L++ R T +I+ Sbjct: 463 YEIRLYDALAQDLLTPFHYFGIQDDEAIDYEVIPQKNGLYIEKDLVEALERSSR-TEYIL 521 Query: 243 SQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKA 298 + +F T + + F ++HA+ + IT AER+ I+ + Sbjct: 522 EMMTKFGHSGTARVGLGFCVNIDHAEYMAAEFNKHQIESLAITSKQTEAEREHAIQRLED 581 Query: 299 QR--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + ++ V + G D P ++++ LRPTES +++ Q +GRGLR K ILD+ Sbjct: 582 DQDPLSFIFTVDLFNEGVDIPKINVMLFLRPTESPTIFIQQLGRGLRKHKSKEYVTILDF 641 Query: 357 AGNPHDLYAPEVGTPKGKS 375 GN + + +S Sbjct: 642 IGNSQRAFVAPLVLSGQQS 660 >UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKE3_SEBTE Length = 993 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 157/364 (43%), Gaps = 29/364 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q E ++ +IV TG GK+ + A ++ ++ L +AH +EL+ Sbjct: 272 QSELLEKLKLTREFGNKKGLIVAATGTGKTYLAAMDILKMNPKSFLFIAHREELINNAFN 331 Query: 68 KYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECHRIGD 124 + + + + K + + +F ++QS+ +N + F + F +I+DE H Sbjct: 332 VFSKILPYDKNEYGFLTGSEKNYNKRFMFSTIQSLYKNTEYFSKDAFDYIIIDEFHH--- 388 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + S Y+ ++ + +LGLTATP R+ I + + ++ E Sbjct: 389 SKASTYEAVINYFN----PFFMLGLTATPERMDGKDILELCDYNLIG------------E 432 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + LR +++ L+P + D+ ++ SNG + + L +L +R+ I ++ Sbjct: 433 MGLREALEYDLLSPFHYFGVIDDTVDYEQIPF-SNGKYDDKILGEKLSIPKRV-DFIHNK 490 Query: 245 IME--FAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKAQR 300 I + F R + F A ++HA+ + IT +R +I F+ Sbjct: 491 IEKIGFDGDRVKSIAFCANIKHAEFMKEQFRLKGYTTESITAKDSQLKRKEVINAFQTGE 550 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 L V + G D P V+L+ LRPT S +++ Q +GRGLR K ILD+ GN Sbjct: 551 IEILCVVDIFNEGIDIPDVNLLLFLRPTMSSTIFIQQLGRGLRKVKNKDFVTILDFIGNH 610 Query: 361 HDLY 364 Y Sbjct: 611 KKDY 614 >UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q076_9GAMM Length = 599 Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats. Identities = 159/621 (25%), Positives = 256/621 (41%), Gaps = 108/621 (17%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPT-GAGKSLVIAELARL-----ARGRVLVL 55 +++LRPYQQ A+D + RH IV GAGKS++IAEL + + R+++ Sbjct: 1 MYSLRPYQQRALDELMYWLNRHNDGNPIVDACVGAGKSIIIAELCKRIIELDPQARIVMC 60 Query: 56 AHVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSL 113 KEL QN K +A+ +A + +A L +K+ + +++F ++ S+A+ G+ ++ Sbjct: 61 VASKELCQQNLEKLRAIWEDAPAGVCSASLGQKDMNSQIIFATIGSIAKYAHEL-GKVNI 119 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 LI+DECH + D Y+ + + K +P++ ++G T TPFR W++Q Sbjct: 120 LIIDECHNVNSDNAGMYRTFIDDIKKYGSPYVCVIGFTGTPFRGDGIWLWQ--------- 170 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 + LF + + ++K G+L+P D + ++ S G + DL Sbjct: 171 GKDPLFAGTATRVTMDELLKLGFLSPLVVDQGTPETIDTTGVKT-SMGDYVVKDLENA-A 228 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP---------AEDAALITGD 283 I +S + E A RK +IF T++HAK ++ L + ++T Sbjct: 229 LDPVIIKKTVSDLCERGAERKKWLIFCVTIDHAKAVLDELKVTENEHFTLNLNPEMVTSK 288 Query: 284 TPGAERDVLIENFK-----AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 T R ++ FK LVNVA LTTGFDAP DLIA+LRPT+S LY QI Sbjct: 289 TSNIMRSDILARFKLPHNQPSAINCLVNVACLTTGFDAPSTDLIALLRPTKSPVLYVQIA 348 Query: 339 GRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGK----SDNVPVQVFCPACGFANTFW 394 GRG+R+A K DCL LDY DL + + K +D +CP CG N Sbjct: 349 GRGMRIAEEKKDCLWLDYTSTTRDLGPVNLIKGRNKINVVTDGTAPFKYCPDCGNMNPI- 407 Query: 395 GKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTV 454 C +C A Sbjct: 408 -----------------------------------HATECVECGA--------------- 417 Query: 455 LVDPDDMLKAALRLKDALVLRCSGMSLQHGHD-------------EKGEWLKITYYDEDG 501 L+ + +AL L Q D K L+I Y+ D Sbjct: 418 LIPVNQNSPHNSTASNALPLHGFQPQPQLWFDIEQVGYYKHQGKNGKPPTLRIDYHVADE 477 Query: 502 AD-VSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARM 560 +SE + + H IP A ++ + L +P + + Sbjct: 478 VYPISEWKCFEHDGFALRMASQWWSDHMVGFDIPFSVDEALQLIHENQLTIYPTRIQCQK 537 Query: 561 --KGQYWQVREKVFDYEGRFR 579 +G++WQ+++ ++YE + R Sbjct: 538 DAQGKFWQIKK--YEYERKDR 556 >UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WVJ5_ALIAD Length = 607 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 121/405 (29%), Positives = 178/405 (43%), Gaps = 43/405 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARGRVLVLAHVKE 60 LR YQ EAVDA R K V+V TGAGK+++ ++ A RL RG VL LAH E Sbjct: 12 LKLRDYQVEAVDAIR---RYPKPRPVLVAATGAGKTVISSQFAVERLERGPVLFLAHRDE 68 Query: 61 LVAQNHAKYQAL-------GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEF 111 L+ Q K+ + G E I + SVQ++++ L+ + Sbjct: 69 LLDQTLDKFSVVFDALAEKGREVKIGRIQGPDDDVEADFAVASVQTISQPERLERWMAAH 128 Query: 112 SL---LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 +I DECH + L L V LGLTATP+R K Sbjct: 129 ETTPTVITDECHHATARTYMRIYHALGFLGSVPEGHVHLGLTATPYRTDK---------- 178 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG-LFSEADL 227 D + ++ Y + + +I G+L PP+ + + +V+ L+ + +G +S+A++ Sbjct: 179 ---ADLRKVYDGVAYAIGIHDLIDMGWLVPPKSVKLEIVE----GLEGKDDGADWSDAEV 231 Query: 228 NRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA--ALITGDTP 285 + + I++ A+ R + F A+VEHA + A++ G P Sbjct: 232 EGAVDTPS-VNKQIVAAWQAQASDRLTI-AFCASVEHAYHLAEEFEKAGVPVAVVHGALP 289 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER ++ F R L N VLT GFD P V I + RPT S SLY Q VGRGLR+A Sbjct: 290 KEERRQTLDAFSDGNIRVLCNYGVLTEGFDRPEVSCIIMARPTLSHSLYVQCVGRGLRIA 349 Query: 346 PG--KTDCLILDYAG--NPHDLYAPEVGTPKGKSDNVPVQVFCPA 386 P K DCL+LD G + H L + + + P Sbjct: 350 PHIFKQDCLVLDVVGVTDVHRLMTVDRLLAGEDKEESGEKREGPG 394 >UniRef50_B8I140 Type III restriction protein res subunit n=16 Tax=root RepID=B8I140_CLOCE Length = 536 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 122/435 (28%), Positives = 197/435 (45%), Gaps = 37/435 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVK 59 LRPYQQEA A LN + + ++VL TG GK++V +++ RVL+LAH Sbjct: 1 MELRPYQQEAKQAVLNEWGKGILKTLLVLVTGGGKTIVFSKITEECVRNGERVLILAHRG 60 Query: 60 ELVAQNHAKYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEFS-LLI 115 EL+ Q K + L A S +VV GSVQS+ R L+ F ++ +I Sbjct: 61 ELLDQAADKLKKATNLGCATEKAEESCIGSWFRVVVGSVQSLMREKRLNQFPKDYFNTII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H D YQ++L+H + ++LG+TATP R + QF Sbjct: 121 IDEAHHCLSDG---YQRVLSHFNEA----KVLGVTATPDRGDMRNLGQF----------- 162 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 F YE L IK G+L P + +P+ + D S + Q+ G F DL L + Sbjct: 163 --FESLAYEYTLPRAIKEGFLCPIKAQTIPL-KLDLSGVSVQA-GDFKNGDLGNAL---E 215 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 I ++++ K V +F ++ +++ +L + + +R+ ++ + Sbjct: 216 PYLESIADEMLKCCTDHKTV-VFLPLIKTSQKFKDILNKKGFRAAEVNGNSQDREQVLAD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F + ++ + N +LT G+D P VD I +LRPT+ SLY Q+VGRG RL GK L+LD Sbjct: 275 FDSGKYNVICNSMLLTEGWDCPSVDCIVVLRPTKIRSLYVQMVGRGTRLHSGKDHLLLLD 334 Query: 356 YAGNP--HDLYAPEVG--TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 + + H+L P + + + + C K AD + + Sbjct: 335 FLWHTERHELCHPAALICESEEVAKKMTENIEAAGCPVDIEAAEKQAADDVVAQREEALA 394 Query: 412 QGWFEDDDGHREQCD 426 + E + R+ D Sbjct: 395 KKLAEMKNRKRKLVD 409 >UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococcales RepID=A3Z7D3_9SYNE Length = 1052 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 108/391 (27%), Positives = 172/391 (43%), Gaps = 45/391 (11%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIA-ELARLA---------- 48 F LRPY Q+E ++A H ++V TG GK+++ A ++ARL Sbjct: 315 FNLRPYAYQREMLEALAAERTVHDRWHNLVVAATGTGKTVLAAFDVARLHSDFPERFPAA 374 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRK-ESHGKVVFGSVQSVA-RNLD 105 +L++AH KE++ Q A ++ + + + + + VF SVQS+A R+L Sbjct: 375 DPPPLLLIAHRKEILQQALATFRQVLRDPAFGELYVDGELPRQWRHVFASVQSLAQRDLA 434 Query: 106 AFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQF 164 F+++IVDE H Y++ L HL LLGLTATP R + ++ Sbjct: 435 EIPADRFAVVIVDEFHHAA---ALSYRRWLDHLRPQ----LLLGLTATPERADGLDVLRW 487 Query: 165 HYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSE 224 EL L + G L P + D S L+ + G + Sbjct: 488 FG------------GRIAAELRLWTALDQGLLAPFHYFAVADAT-DLSSLEWRRGG-YVP 533 Query: 225 ADLNRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALI 280 A+L+ R I+S++ + A R + F +VEHA+ + A A + Sbjct: 534 AELSTLYTGDHRRVALILSELEKAVAEPRRMRALGFCVSVEHARFMAERFRAVGLQAEAL 593 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 TP ER + A + L V + G D P +D + +LRPTES ++ Q +GR Sbjct: 594 DASTPSDERREALRRLHAGELQILFAVDLFNEGLDIPSIDTVLLLRPTESAVVFLQQLGR 653 Query: 341 GLRLAP--GKTDCLILDYAGNPHDLYAPEVG 369 GLRL+P GK+ +LD+ G H + ++ Sbjct: 654 GLRLSPETGKSCLTVLDFIGQQHRRFRFDLR 684 >UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii RepID=B3CKZ8_PROFR Length = 1054 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 101/406 (24%), Positives = 176/406 (43%), Gaps = 34/406 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGR-----VLVLA 56 +P+Q+ +D + ++ ++V TG GK+++ A + RL + +L +A Sbjct: 309 IQPQPHQRIMLDDLAHERQQDFHRNLVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVA 368 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKES-HGKVVFGSVQSVAR-NLDAFQGE-FSL 113 H KE++ Q + Y + +A+ + + + VF SVQS++R NLDA F + Sbjct: 369 HRKEILEQARSTYAHVLNDANFGELLVGGEHPTEHRHVFASVQSLSRMNLDALDPTAFDV 428 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE H E + Y++IL H LLGLTATP R + F Sbjct: 429 MVIDEFHHA---EAATYRRILDHFQ----PRELLGLTATPERADGVNVASFFGD------ 475 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 EL L + L P + D ++A S G + +L+R Sbjct: 476 ------RIASELRLWDALDGDLLAPFHYF-VQWDDTDLRGVKA-SGGEYQAGELSRLYTD 527 Query: 234 QQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 + +++ + TR + F +VEHA + +L + ++G + R Sbjct: 528 NDGRSRLVLAAMRHRILDPTRMKALAFCVSVEHAHYMADVLSQAGVPSVALSGQSSREIR 587 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + I + + R L V + G D P +D + +LRPT+S +++ Q +GRGLR APGK+ Sbjct: 588 EAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAPGKS 647 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWG 395 +LD+ G+ + ++ E V GF+ G Sbjct: 648 VLTVLDFVGHQREDFSFEPRLRALTGQGRKQLVDSVEKGFSELPAG 693 >UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobacteria RepID=A6EW89_9ALTE Length = 1282 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 158/367 (43%), Gaps = 32/367 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 QQEA++A ++VL TG GK+ + + A++ R+L +AH +E++ Q Sbjct: 400 QQEALEALDLTRMEGYRRGLVVLATGLGKTWLSAFDAAQMGARRILFVAHREEILYQAAE 459 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGD 124 Y + + + K+++ ++ SVQ++ + +L+ F F ++VDE H Sbjct: 460 TYLRIKPNSRVGFYMGKQRDRTVDILCASVQTLGKETHLERFDPRHFDYIVVDEFHHAA- 518 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y ++L + LLGLTATP R + I + ++E Sbjct: 519 --APVYHRLLNYFAPQF----LLGLTATPDRTDRSDILSLCDDNL------------VFE 560 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 PL +K +L P + D++ + + NG F L +L R + Sbjct: 561 YPLFEGVKRRFLVPFHYYGIYDETVDYTEIPWR-NGKFDPNLLANKLATYGR-AKQVHRV 618 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFR 302 E +R + F + HA + + +A + G++ + R +E + + Sbjct: 619 WGEQKQSR--TLAFCVSRVHADFMADQFSRKGVRSAAVHGESEMS-RGEALEKLENGQLD 675 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL--APGKTDCLILDYAGNP 360 + +V + G D P +D + +LRPTES L+ Q +GRGLR A GK +ILD+ GN Sbjct: 676 VIFSVDLFNEGVDLPAIDTVLLLRPTESKILFLQQIGRGLRKSSATGKDKLVILDFVGNH 735 Query: 361 HDLYAPE 367 Sbjct: 736 RSFLHKP 742 >UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum RepID=A3EQ89_9BACT Length = 1054 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 36/378 (9%) Query: 3 FTLRPY--QQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLV 54 F +RPY QQE +D ++V TG GK+++ A R R + L Sbjct: 315 FDIRPYPFQQEILDRLEVEREVNGSFRNLVVSATGTGKTVIAAFDFRRFREKRPDATFLF 374 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGL-KRKESHGKVVFGSVQSVARN-LDAFQGE-F 111 +AH KE++ Q+ ++ + + + + + H + VF S+QS+ R LD E F Sbjct: 375 VAHRKEILEQSLKHFRHILEDRNFGELWVAGSRPVHVRHVFASIQSLDRAELDRISPERF 434 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 +++DE H Y+++L L LLGLTATP R + ++ Sbjct: 435 DYVVIDEIHH---GMAPTYRRLLETLK----PRILLGLTATPERSDGLDVRRYFND---- 483 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 E+ L I L P + + D+ L+ + G + +L + L Sbjct: 484 --------RTAAEIRLGEAIDRNLLCPFHYFGITD-EVDYRNLRWE-RGQYDRRELEKVL 533 Query: 232 KKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAEDAALI--TGDTPGA 287 ++ + E+ GV F V HA+E+ L I + D+ Sbjct: 534 TGNDLRNRSVLRALREYCPDLSGVRGIGFCVGVRHAEEMSDLFNRAGIPSIALSADSSRE 593 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 RD + + ++ V + G D P VD + LRPTES++++ Q +GRGLR G Sbjct: 594 VRDAVSARISSGELTFVFVVDLYNEGIDIPAVDTVLFLRPTESLTIFLQQLGRGLRQRWG 653 Query: 348 KTDCLILDYAGNPHDLYA 365 KT +LD+ G+ H+ + Sbjct: 654 KTHLTVLDFVGHMHEKFD 671 >UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Lactobacillales RepID=Q1WTK7_LACS1 Length = 986 Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 169/378 (44%), Gaps = 39/378 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q+EA+ +T +I+ TG GK+ + A ++ R L +AH ++++ ++ Sbjct: 224 QKEALKNLQKLRLLRETKGLIISATGTGKTYLAALDVKNYNPKRFLFVAHREQILKKSLD 283 Query: 68 KYQAL---GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHR 121 + + + + K + K +F +VQ++++ NL+ F + EF +++DE H Sbjct: 284 SFHKVLGGDKKTNYGILSGNAKNTDAKYLFATVQTLSKAENLNQFKRDEFDYILIDEAHH 343 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G Y ++L + T P LLG+TATP R IY+ + + Sbjct: 344 VGSKI---YGKLLDYFT---PDF-LLGMTATPERSDDKNIYELFDYNVP----------- 385 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 YE+ L+ ++ L P + + Y NG + + N + + ++ Sbjct: 386 -YEIRLQEALEEEMLVPFHYIGVSDYTY---------NGEVIDDNTNLKYLVSEERVKYV 435 Query: 242 ISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 + Q + ++F + E A EI LL + +++G+ +R+ IE K Sbjct: 436 VEQSKYYGYDGDVLHGLVFVSRKEEADEIAKLLTKNGYPSQMLSGEDSQEQREQAIEKLK 495 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 YLV V + G D P ++ + ++R TESV ++ Q +GRGLR A GK ++D+ Sbjct: 496 NGELTYLVTVDIFNEGIDIPFINQVIMMRKTESVIVFVQQLGRGLRKAQGKEYLTVIDFI 555 Query: 358 GNPHDLYAPEVGTPKGKS 375 GN + Y V +S Sbjct: 556 GNYKNNYLIPVALTGDQS 573 >UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YI12_EXIS2 Length = 774 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 173/388 (44%), Gaps = 37/388 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 Q+EA+ A +T A+ VL TG GK+ + A AR + R+L LAH +EL+ Q Sbjct: 199 QEEALRALRETMEEGRTRALTVLATGLGKTYLSAFFARDFK-RILFLAHQRELLEQAERS 257 Query: 69 YQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGE-FSLLIVDECHRIG 123 ++ + + + + + V+FGSVQ+++ R+L+ F + F L+I+DE H Sbjct: 258 FKKVESNWQTAFYIGSDRTNDEQTDVLFGSVQTLSQNRHLERFAQDYFDLIIIDEFHHAA 317 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ++L H LLGLTATP R+ +Y + + + Sbjct: 318 ---AKSYQKVLAHFEPRF----LLGLTATPDRMDGADVYALCDN------------NVAF 358 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 ++ I G+LTP + V D+S+L+ + +L + + + ++ +I + Sbjct: 359 QMHFTSAINEGFLTPFHYYGIHDV-IDYSQLRRMGRK-YDAMELEQA-QIDRTVSENIYA 415 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRY 303 + T + F +++ A+ + +I R I+ F+ Sbjct: 416 AWSKHRQT--KTIGFCSSIRQAEYLAQTFREMGHQVIALTGQTINRRERIQEFEQGTVEI 473 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD- 362 + V + G D P VD + RPTES+++Y Q +GRGLRLA K+ C+I+D GN + Sbjct: 474 VFTVDLFNEGVDIPKVDTLLFCRPTESIAIYTQQIGRGLRLANEKSHCVIIDLIGNYKNV 533 Query: 363 ------LYAPEVGTPKGKSDNVPVQVFC 384 L + +G + + C Sbjct: 534 ETKLMLLGTVKDKLKRGDKEPITPPKGC 561 >UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B6H0F8_PENCW Length = 645 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 154/369 (41%), Gaps = 32/369 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LR YQ+E++ + L + I L TGAGK+++ +L R +++ Sbjct: 43 IVLRNYQEESIQSVLKYLGEGHRRLGISLATGAGKTVIFTQLISRIPPRDTKATKTMIIV 102 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR-NLDAFQG-EFSL 113 H +ELV Q + + G G ++ SVQ++AR + F F L Sbjct: 103 HRRELVEQAAKHCSLAYPDKTVEIEMGKNVATGAGDIIIASVQTLARGRMYKFDPSAFKL 162 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHGMV 170 ++VDE H I Y++ L H P L+G++AT R + Sbjct: 163 VLVDEAHHI---VAKSYREALGHFGLNEPSPNGPVLVGVSATFSRFDGLKL--------- 210 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 A +Y MI +L + + S+++ S G F+ L+ Sbjct: 211 ----GAAIDHIVYHKDYVDMIGENWLANAVFTTVK-SGANLSKVKKDSFGDFALGSLSEA 265 Query: 231 LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAE 288 + + M A RK ++F +EHA+ + DA IT TP Sbjct: 266 VNTTST-NNITVRAWMASAENRKSTLVFCVDIEHARRLTAAFRDHGVDARYITASTPKGV 324 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R + FK Q F L+N + T G D P++D + + RPT S +L Q++GRGLRL PGK Sbjct: 325 RVEQLRAFKDQEFPVLLNCGLFTEGTDIPNIDCVLLARPTRSRNLLIQMIGRGLRLFPGK 384 Query: 349 TDCLILDYA 357 DC ++D Sbjct: 385 KDCHVIDMV 393 >UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GJE0_SORC5 Length = 1030 Score = 291 bits (744), Expect = 7e-77, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 34/372 (9%) Query: 3 FTLR--PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARL----ARGRVLVL 55 LR P+Q+ ++ R ++V TG GK+++ A + ARL R R+L + Sbjct: 307 IELRAEPFQERLLEQIALSRERGHHRNLLVSATGTGKTVMAAIDYARLREALPRARLLFV 366 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSV-ARNLDAFQG-EFS 112 AH E++ Q+ A ++ + + R + VF S+QS+ A LD F Sbjct: 367 AHRGEILEQSLATFRHGLRDHAFGELWVGGRHPRRFEHVFASIQSLSAAGLDDLDPSHFD 426 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++I+DE H Y+ +L + V LLGLTATP R + + Sbjct: 427 VVIIDEFHHAA---APSYRVLLERVRPVE----LLGLTATPERSDGLPLLGWFDD----- 474 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 EL L I L P + D + + + L++ L Sbjct: 475 -------RIAAELRLWDAIDQHRLVPFVYYGIHD-GLDLRDVPWRRGRGYDVDGLSKLLT 526 Query: 233 KQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 +++Q++ + + F ++EHA+ + + A + GD+P E Sbjct: 527 ANDVWARQVVAQLVAHVDDTRTIRALGFCVSIEHARFMARVFHEAGVAATAVWGDSPDDE 586 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R + + A+R + +V + G D P VD + +LRPT+S +L+ Q +GRGLR + GK Sbjct: 587 RRAALADLGARRINVVFSVDLFNEGIDVPAVDTLILLRPTDSPTLFLQQLGRGLRRSAGK 646 Query: 349 TDCLILDYAGNP 360 T C +LD+ G+ Sbjct: 647 TVCTVLDFVGHH 658 >UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5J4_SLAHD Length = 974 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 164/384 (42%), Gaps = 43/384 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+ K A+++ TG GK+ + ++ + +VL + H ++ ++ Sbjct: 225 QTEALAGLAQLRDEGKNRALLISATGTGKTYLSAFDVKAFSPKKVLYVVHRNKIARKSME 284 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRI 122 +Q + E K + + +F +VQ++A+ L+ F + EF +IVDE HR Sbjct: 285 SFQNVLSSKEYSFGMFSGSEKTTDARCIFATVQTLAKRENLEKFAKDEFDYIIVDEVHRA 344 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + Y + + + +LG++ATP R IY+ H + Sbjct: 345 G---ANSYLRFMDYFEAEF----ILGMSATPERTDDFDIYELFDH------------NIA 385 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L +++ L P + V D L+ A NR + H++ Sbjct: 386 YEIRLNDALEYNLLVPFHYFGVAEVCIDGELLEED-------ASFNRLV--SDERVRHVL 436 Query: 243 SQIMEFAATRKGVM--IFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKA 298 + I ++ + + V +F + +E A+E+ ++G T A RD IE + Sbjct: 437 NAINKYGYSGERVHGLVFCSRIEEAEELSQKFNNLGYKTVALSGSTSEALRDDAIERLEQ 496 Query: 299 QR-----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR + GK ++ Sbjct: 497 DEDDENALDYIFTVDIFNEGIDIPAVNQVVMLRPTQSAIVFVQQLGRGLRTSEGKEYVVV 556 Query: 354 LDYAGNPHDLYAPEVGTPKGKSDN 377 +D+ GN Y + +S + Sbjct: 557 IDFIGNYQKNYLIPIALFGERSGS 580 >UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=Lactobacillus RepID=Q1WS72_LACS1 Length = 951 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 162/384 (42%), Gaps = 38/384 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q A+ K+ A++V TG GK+ + + R L + H +++ + Sbjct: 216 QMAALKELEKIVAEKKSKALVVSATGTGKTYLGAFAVKEYQPKRFLFVVHREQIAKKAME 275 Query: 68 KYQAL-GLEADIFAA-GLKRKESHGKVVFGSVQSVA--RNLDAFQ-GEFSLLIVDECHRI 122 ++ + G ++ R+++ K +F ++Q+V+ + LD F +++DE HR Sbjct: 276 SFKKVIGGSGRLYGMLSGDRQDTQAKYIFSTIQTVSQDKILDQLPSNYFDYILIDEAHR- 334 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 YQ+I+ + P LG+TATP R+ +Y + + Sbjct: 335 --SAAPSYQKIMHYFK---PDF-WLGMTATPERMDNQDVYALFDYNLA------------ 376 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ LR +++ L+P + + + D + +N + L +R+ +I+ Sbjct: 377 YEIRLRDALENKMLSPFHYIGVQDYEEDGITVDETTNLRY--------LTAPKRV-KYIL 427 Query: 243 SQIMEFAATRKGVM--IFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENFKA 298 Q+ + + V +F + + A E+ A +T R ++ + Sbjct: 428 DQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAKALTNQDSNERRRAVVRELEE 487 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + Y++ V + G D P V+ + +LR T+S ++ Q +GRGLR PGK +LD+ G Sbjct: 488 GKIEYIITVNLFNEGIDIPCVNQVVMLRNTQSSIVFIQQLGRGLRKYPGKDFVTVLDFIG 547 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQV 382 N + Y + + S ++ Sbjct: 548 NYKNNYLIPIALTQDNSRSIDEAK 571 >UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IPV6_GEOTN Length = 815 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 165/366 (45%), Gaps = 32/366 (8%) Query: 4 TLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 T+RP Q EA++ + A++V+ TG GK+ + A AR RVL +AH +E+ Sbjct: 221 TIRPRFAQVEALERLEAAYEEGYDKAMVVMATGLGKTYLAAFFARR-FSRVLFIAHREEI 279 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGE-FSLLIVDE 118 + Q ++ + + +K+ + +VF S+ +++ ++L +F+ + F L++VDE Sbjct: 280 LRQAKQSFECVIPDRTAGIYDGHQKDGNADMVFASIFTLSMKKHLFSFRPDSFDLIVVDE 339 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H Y+++L + LLG+TATP R +Y Sbjct: 340 FHHAA---ARSYERVLRYFRPEF----LLGITATPDRNDNKDVYAICD------------ 380 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + Y + ++ G+L P + D+S+++ + E +L + ++ ++ + Sbjct: 381 GNVAYRIDFIEAVQRGWLAPFHYYGVYD-DTDYSQIKWL-GSRYDEEELLQ-VQLREEMA 437 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENF 296 +I+ ++ TR ++F +++ A + + R I Sbjct: 438 ENILRAWEQYKKTR--TLVFCSSIRQADFLCEYFRRRGYRTVSLHSKQTTIPRQQAIAML 495 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + + V + G D P VD + +RPTES++++ Q VGRGLRL GK C+I+D Sbjct: 496 EQCELDAIFTVDLFNEGVDIPSVDTLLFVRPTESLTVFTQQVGRGLRLYEGKDYCVIIDL 555 Query: 357 AGNPHD 362 GN + Sbjct: 556 IGNYRN 561 >UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax=Bacteria RepID=A7HHG6_ANADF Length = 1418 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 102/387 (26%), Positives = 166/387 (42%), Gaps = 40/387 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHVKELV 62 Q++A+DA + A++V+ TG GK+L+ A A R RVL +AH +EL+ Sbjct: 335 QRDALDALAATRADGEKRALVVMATGLGKTLLAAYDADAFRSTLDHPIRVLFIAHRRELL 394 Query: 63 AQNHAKYQAL----GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 Q ++ + + + R E +V SVQ ++R NL+ E F ++ Sbjct: 395 VQAATTFRRVLRGAMPDLRVGWFAEDRSELEADIVVASVQKLSRPENLERLAAERFDYVV 454 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H E Y++IL+ + LLGLTATP R +G + + Sbjct: 455 VDEVHHA---EAPSYRRILSRIDPGF----LLGLTATPDRADEGDVLGLFDDNLP----- 502 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDM-PVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 + L I+ L P + V Y + + N F L ++ Q Sbjct: 503 -------FRADLGVGIEAKRLVPFAYFGLKDTVDYSHDNIPWR-NRRFDPKRLEEAVQTQ 554 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVL 292 +R+ + S + E R ++F ++ HA+ L + + D +R Sbjct: 555 ERM-ERLWSALGEHGGMR--TLVFCCSIPHAEFAKRWLEGRGVRVRAVHSDPGSDDRSRA 611 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 + + A R + V + G D P VD + +LRPTES ++ Q +GRGLR+A GK Sbjct: 612 LADLAAGRIDAVCAVDLFNEGVDVPLVDRVVMLRPTESPVVFLQQLGRGLRIAEGKERLT 671 Query: 353 ILDYAGNPHDLYAPEVGTPKGKSDNVP 379 ++D+ GN H ++ V T D P Sbjct: 672 VIDFVGN-HRVFLDRVRTLLSLGDARP 697 >UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T4_9BACT Length = 551 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 178/377 (47%), Gaps = 38/377 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLARG--RVLVLAHVK 59 LRPYQQ AV A +R +++VLPTG GK++V +AR G RVL+LAH + Sbjct: 1 MELRPYQQAAVTAIEEGWRDGSLRKSLLVLPTGTGKTVVFCTVARQTTGDGRVLILAHRE 60 Query: 60 ELVAQNHAKYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQGE-FSLLI 115 EL+ Q KY + E A A VV GSVQ++ + L F + FS +I Sbjct: 61 ELIEQAREKYYRITGEIAAKEKAHCSCFGDPASVVVGSVQTLQNVKRLSKFPADYFSTII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H YQ++L H P R+LG+TATP R K + ++ Sbjct: 121 IDEAHHA---LAVGYQRVLEHF----PRARVLGVTATPDRGDKRNLAEY----------- 162 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA---QSNGLFSEADLNRELK 232 F YE L+ I GYL P L P+ + D S ++ + F A+L+ L Sbjct: 163 --FDGVAYEYSLKSAIADGYLCPIRALTAPL-RLDVSNVKTSRSKFGNDFDRAELSVAL- 218 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVL 292 + P I I E A+ RK V +F V A++ A + R Sbjct: 219 --EEYLPQIAQCIKENASARKTV-VFLPLVSIAQQFQRECEAAGLEAREVNGESDNRAET 275 Query: 293 IENF-KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 + F KA L N +LT G+D P VD + +LRPT+ +LY Q++GRG R+ PGK + Sbjct: 276 LAWFDKAGPGSVLCNAMLLTEGWDCPSVDCVVVLRPTKVRALYCQMIGRGTRICPGKENL 335 Query: 352 LILDY--AGNPHDLYAP 366 LILD+ + HDL P Sbjct: 336 LILDFLWLSDKHDLCKP 352 >UniRef50_A9DEN3 NTP dependent helicase n=1 Tax=Yersinia phage PY100 RepID=A9DEN3_9CAUD Length = 572 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 151/569 (26%), Positives = 255/569 (44%), Gaps = 51/569 (8%) Query: 34 GAGKSLVIAELAR---LARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG 90 GAGK+ +I+++A GRV++LAH L Q + + + A +F+A +K+ G Sbjct: 6 GAGKTFMISDIAANTYRKGGRVVILAHQPVLAGQTYDELYEHDVPAAMFSAKFGKKQV-G 64 Query: 91 KVVFGSVQSVARNLDA-FQGEFSLLIVDECHRIG-DDEESQYQQILTHLTKVNPHL---- 144 KV GSV +VA L++ F LL++DE H++ ++E SQY +I+ H T V Sbjct: 65 KVTVGSVGTVANALNSHFMQPVDLLLIDEGHQVPVEEERSQYMKIINHFTCVAQQAGRIC 124 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER--L 202 ++ T +PFR + + G K + D IY++ + + G+L+PP Sbjct: 125 HIITYTGSPFR------FCTRLDNLYIGPRKLFWEDIIYDISSTKLTEMGFLSPPVFGFP 178 Query: 203 DMPVVQYDFSRLQAQSNG-LFSEADLNRELKKQQRITP--HIISQIMEFAATRKGVMIFA 259 D YDFS ++ +S +SE +LN + + I++++++ R +IFA Sbjct: 179 DKDDAAYDFSAIKERSGTWEYSEEELNAIVNSEDGKLKLHKILAEVIDKTKDRNMRIIFA 238 Query: 260 ATVEHAKEIVGLL-----PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGF 314 +T HA+E+ L L+T D+ E+D +E K +L+NV+ LTTGF Sbjct: 239 STKAHAREVKRALIAMGVEENQIGLVTDDSSEQEKDFAMEGAKKGTISWLINVSCLTTGF 298 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG--------KTDCLILDYAGNPHDLY-- 364 DAP +D + LRP S++L Q +GRG RL K + L+LD+AG L Sbjct: 299 DAPLIDCVIFLRPVGSLTLLIQCMGRGARLLHPWMKEAGYIKDNYLVLDFAGVFDRLGYM 358 Query: 365 --APEVGTPK-GKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGH 421 P +G KS+ CP C N G LI++ E + Sbjct: 359 FDDPLLGQADLTKSEKKGELQQCPRCATWN-GENARRCRG-LIKNIREDNPAALEAIEDI 416 Query: 422 REQCDFRF-RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 +CDF F + CP+C END + CR+C L+DP+ L D + GM+ Sbjct: 417 DGRCDFFFIQGTICPECGTENDKTTKNCRKCKHELIDPNQALLHKAYSDDEMR-EVVGMT 475 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRL---QTPAQRTAFEQLFIRPHTRTPGIPLRW 537 + + G ++ + + + + Q+ + F+ + + P + Sbjct: 476 MGIAANG-GLRVEFQMKEPNKQHGNPNIFFPPIKGDVQKRIWNNTFVDIYVK-PEFKHYF 533 Query: 538 ITAAD---ILAQQALLRHPDFVVARMKGQ 563 + ++ Q +R P + R+ + Sbjct: 534 YNCKNYDTVIKLQRAVRCPIEIAYRINEK 562 >UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DU02_LODEL Length = 760 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 109/381 (28%), Positives = 169/381 (44%), Gaps = 40/381 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------------- 48 F LR YQ +A++A + +V+ TG GK+++ + L R Sbjct: 130 FKLRDYQVQAIEAIKLALDQGIRRPAVVVATGGGKTVIFSNLIRELLDMLRTETTKSQSQ 189 Query: 49 RGRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLD 105 R+LVLAH +EL+ Q K +A+ E ++ R + VV SV S+ R L Sbjct: 190 NKRILVLAHTEELIKQAVQKIKAINPELNVRIEMRSARSKDTDDVVVASVMSIKHPRRLA 249 Query: 106 AFQG-EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIY 162 F F+ +I+DECH + YQ+IL H + L L +G TAT R K + Sbjct: 250 RFDPAHFTSIIIDECHHA---PAATYQKILNHFGALLHDLHLSVIGFTATLSRFDKRSL- 305 Query: 163 QFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF 222 +F +++ L MI+ G L P V + ++ Q + Sbjct: 306 ------------GVIFDKVVFQRSLLTMIEAGELVKPVIHRPLVANLNLESVKRQ-GSDY 352 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGLLPAE--DAAL 279 +L + ++S + T K +IF V+H E+ L + +A Sbjct: 353 DTENLYNAMSAVGFNDKAVLSYMRLVEQTACKSTLIFCVNVQHCWELCSTLQSHGINAQY 412 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 +TG+T +ER ++E+FK + L NV V T G D P++D I + RPT S +L Q +G Sbjct: 413 VTGETSKSERAAIVEDFKLGKIPVLCNVEVFTEGTDIPNIDSIILARPTLSRTLVTQSIG 472 Query: 340 RGLRLAPGKTDCLILDYAGNP 360 RGLRL KT C ++D N Sbjct: 473 RGLRLHKNKTCCHVVDLVDNT 493 >UniRef50_A6LX80 Type III restriction protein, res subunit n=15 Tax=cellular organisms RepID=A6LX80_CLOB8 Length = 845 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 157/363 (43%), Gaps = 34/363 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 Q EA+ N ++V TG GK+ + A ++ A RVL +AH +E++ Q Sbjct: 240 QIEALYELENSREEGFDKGLVVAATGVGKTYLAAFDSKEAE-RVLFVAHREEIIKQAAIS 298 Query: 69 YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDA---FQGEFSLLIVDECHRIG 123 ++ + DI K++ ++F VQ++ ++ L + F +++DE H Sbjct: 299 FKNVRNSDDIGFFYNNTKDNDKSMIFSLVQTLGKDEYLKEEYFTRDYFDYIVIDEFHHA- 357 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 S Y++I+ + T LLGLTATP RL ++ + + +Y Sbjct: 358 --VSSNYRKIIDYFTPKF----LLGLTATPERLDSKDVFSLCDY------------NTVY 399 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L I GYL P + ++ ++ + NG +++ +L L +R I++ Sbjct: 400 EIRLSDAINKGYLVPFRYYGIYDETVNYDEVEFR-NGKYNDKELEEALMLNKR-GELILN 457 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPG-----AERDVLIENFKA 298 ++ + R + F + +HA+ + + + R + Sbjct: 458 HYKKYNSNR--ALGFCTSRKHAEYMAKYFCENRITSLAVYSGENGEYSENRTEALNKLTK 515 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + + +V + G D P +D++ LRPT+S +++ Q +GRGLR K +LD+ G Sbjct: 516 GEVKVIFSVDMFNEGLDIPSIDMVMFLRPTQSPTVFLQQLGRGLRKYKDKKYLNVLDFIG 575 Query: 359 NPH 361 N Sbjct: 576 NYK 578 >UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta RepID=B2AZI6_PODAN Length = 678 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 157/375 (41%), Gaps = 38/375 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL------ARGRVLVLA 56 LR YQ+E + A L + I L TGAGK+++ L R L+LA Sbjct: 47 IQLRAYQEECIQAVLTSITQGHKRLGISLATGAGKTVIFTHLIDRVTPPNPQATRTLILA 106 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA---RNLDAFQGEFS 112 H +ELV Q Q+ + G + + S+QS+ R L + Sbjct: 107 HRRELVEQAARHCQSAYPNKTVEVELGNLQATGFADITVASMQSILSKDRLLKFDPSNYK 166 Query: 113 LLIVDECHRIGDDEESQYQQILTHLT---KVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I Y +IL H+ K L+G++AT R + Sbjct: 167 LVLVDEAHHI---VAPGYLKILEHMNLRQKQPDSPTLVGVSATFSRSDGLKL-------- 215 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS---NGLFSEAD 226 A + +Y MI +L+ + D S ++A+ G F A Sbjct: 216 -----GAAIDEIVYHKDYIDMIADKWLSEV-VFTTVESRADLSGVRAKGAGGTGEFETAS 269 Query: 227 LNRELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAE--DAALITG 282 L+R + + + ++ AA R+ ++F + H + DA + G Sbjct: 270 LSRAVNSPE-LNDIVVRAWFAKAAPPKRQSTLVFCVDLSHVAALTERFRHHGIDARYVFG 328 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 DTP ER +E FK + F L+N V T G D P++D + + RPT S +L Q++GRG+ Sbjct: 329 DTPAKERAETLEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLARPTRSRNLLIQMIGRGM 388 Query: 343 RLAPGKTDCLILDYA 357 RL GK +C ++D Sbjct: 389 RLHEGKENCHVIDMV 403 >UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCA5_9ACTN Length = 984 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 103/378 (27%), Positives = 167/378 (44%), Gaps = 39/378 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q++A++A R A++V TG GK+ + ++ A RVL LAH K ++ + A Sbjct: 245 QEKALEALAALHERRDPRALLVSATGTGKTYLSAFDVKAAAPVRVLFLAHRKRILTASMA 304 Query: 68 KYQALGLEADIFAAGLKRKESHGK---VVFGSVQSVARNLDAFQGE-FSLLIVDECHRIG 123 Y+ L D + GL R G F ++ LD E F +++DE HR+G Sbjct: 305 SYKKLL--GDNYTYGLYRAGGDGTEFTCTFAMCSTICGYLDKIDAELFDYIVIDEAHRVG 362 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ+IL H LG+TATP R ++ H Y Sbjct: 363 ---AKGYQRILEHFKPKF----CLGMTATPNRTDGYDVFALFNH------------VIAY 403 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 ++ L+ ++ L P + + D + F+ L +L + R+ HII Sbjct: 404 QITLQDALREDMLAPFHYFGIADLAID-----EEEQSDFT---LFSKLTSEARVN-HIID 454 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQ 299 +I E++ + ++F + +E A+E+ + I G+ AERD +I ++ Sbjct: 455 KIEEYSVKKDGRKGLVFCSRLEEARELAKQFTQRGYKSEAIDGNDSNAERDEVIRKLESG 514 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 Y+ +V +L G D P V+ I +LR TES ++ Q +GRGLR A K L+LD+ GN Sbjct: 515 ELEYIFSVNILNEGVDIPAVNQIIMLRRTESSIVFVQQLGRGLRKADNKESTLVLDFIGN 574 Query: 360 PHDLYAPEVGTPKGKSDN 377 + V K+ N Sbjct: 575 YQQNFLIPVALSGDKTYN 592 >UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=Lactobacillus RepID=Q047C2_LACGA Length = 949 Score = 287 bits (734), Expect = 9e-76, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 165/384 (42%), Gaps = 38/384 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A+ + A++V TG GK+ + + + L L H +++ + Sbjct: 219 QKAALANLNALVKEQAKKALVVSATGTGKTYLGAFAVKEYKPKKFLYLVHREQIAKKALE 278 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRI 122 + + G ++D + + K +FG+VQ+V++ L+ E F +++DE HR+ Sbjct: 279 SFYRVIGGKKSDYGLLTGNKHDFDKKYLFGTVQTVSQEQILEQLDPEEFDYILIDEAHRV 338 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 YQ+IL H LLG+TATP R+ K IY+ + + Sbjct: 339 A---APTYQKILNHFAPKF----LLGMTATPERMDKQNIYEIFDYHLA------------ 379 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ + LTP + + N + SE ++L ++R+ +++ Sbjct: 380 YEIRLKDALNDQMLTPFHYVGVEDYTV--------GNHVISETSKLKDLVARKRV-EYVL 430 Query: 243 SQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 Q+ + + ++F + E A+E+ L + +T + +R + + Sbjct: 431 KQLDYYGYCGEKAKGLVFCSRQEEARELAKLFSQTGHPSRALTNEDSQKQRIEVTHQLEN 490 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y+ V + G D P ++ I +LR T+S ++ Q +GRGLR PGK ++D+ G Sbjct: 491 GELEYIFTVDLFNEGIDIPSLNQIVMLRNTQSSIVFIQQLGRGLRKFPGKDYVTVIDFLG 550 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQV 382 N + Y + KS + V Sbjct: 551 NYKNNYLIPIALNGDKSRDKDQAV 574 >UniRef50_A0L703 Type III restriction enzyme, res subunit n=13 Tax=Proteobacteria RepID=A0L703_MAGSM Length = 560 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 115/410 (28%), Positives = 184/410 (44%), Gaps = 37/410 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA----RLARGRVLVLAHVKE 60 LRP Q++ V+ ++ H + V PTGAGK+++++ + R G+ VLAH E Sbjct: 3 LRPRQKQFVERSVAALHEHG-NTLGVAPTGAGKTVMLSAVIGNMLRNDGGKACVLAHRDE 61 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEFSLLIVDE 118 L QN K+ + + K G+ F V ++AR NLD E LL++DE Sbjct: 62 LTRQNVMKFTKVNPGFSTSVVDARGKSWRGRATFAMVPTLARQKNLDTM-PELGLLVIDE 120 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + Y++I+ NP + GLTATP R K + + +F Sbjct: 121 AHHAA---ANSYRRIIDTALDRNPDCCIYGLTATPNRGDKKAL-------------RPIF 164 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++ L +I G L P + V D + ++ F A++++ + + +T Sbjct: 165 SNVADQVRLGELITAGNLVKPRTFVVDVGTQDALKSVRKTADDFDMAEVSQ-IMNKAPVT 223 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 +I E A TRK + +F +TV+HA+ + D A ++ G+ AER + F Sbjct: 224 EAVIKHWKEKAGTRKTI-VFCSTVDHAQNVTDAFNNADVEAVMVHGELTTAERKAALARF 282 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR-----LAPG--KT 349 + +VNVAVLT G+D P + +LRP+ S Q+VGRGLR L PG KT Sbjct: 283 EKGSAMVVVNVAVLTEGYDHPPTSCVVLLRPSSYKSTMIQMVGRGLRTVDPALFPGLVKT 342 Query: 350 DCLILDYAGNP--HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKT 397 DC++LD+ + H +V + CP C + Sbjct: 343 DCIVLDFGTSSILHGSLEQDVNLDGKEIQGAAPTKECPECQAIVPLAVRE 392 >UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IP85_9CHRO Length = 1060 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 168/393 (42%), Gaps = 49/393 (12%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIA-ELARLA---RGRVLV- 54 F LRPY Q+E +D H ++V TG GK+++ A ++ARL R Sbjct: 316 FDLRPYAYQREMLDQLAAERSLHHRWHNLVVAATGTGKTVLAAFDVARLHADFPER--FP 373 Query: 55 ---------LAHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVARN- 103 +AH KE++ Q A ++ + + + + S + VF SVQS+++ Sbjct: 374 SPDPPPLLLIAHRKEILQQALATFRQVLRDPSFGELWVDGERPSQWRHVFASVQSLSQQD 433 Query: 104 -LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY 162 + F ++IVDE H + Y + L H+T LLGLTATP R I Sbjct: 434 TAEIPADRFDVVIVDEFHHAA---AASYLRWLDHITPK----LLLGLTATPERADGLDIL 486 Query: 163 QFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF 222 + EL L + G L+P + D S L+ + G + Sbjct: 487 HWFG------------GRIAAELRLWSALDQGLLSPFHYFAVADAT-DLSALEWRRGG-Y 532 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAE--DAA 278 A+L+ R I+S++ + A R + F +VEHA + A +A Sbjct: 533 VPAELSTLYTGDHRRVDLILSELDKKLADPSRMRALGFCVSVEHAHFMAERFRARGLNAE 592 Query: 279 LITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 + +P R + + + L V + G D P +D + +LRPTES ++ Q + Sbjct: 593 ALDASSPADVRRDALRRLQNGELQILFAVDLFNEGLDIPAIDTVLLLRPTESAVVFLQQL 652 Query: 339 GRGLRLAP--GKTDCLILDYAGNPHDLYAPEVG 369 GRGLRL+P GK+ +LD+ G H + ++ Sbjct: 653 GRGLRLSPETGKSCLTVLDFIGQQHRRFRFDLR 685 >UniRef50_Q856Y4 Gp50 n=7 Tax=unclassified Siphoviridae RepID=Q856Y4_9CAUD Length = 571 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 180/401 (44%), Gaps = 36/401 (8%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVKE 60 LR YQ AV A + +VLPTGAGKS VI +LA A RV+ LAH E Sbjct: 11 ELRSYQTAAVAAVERDWESGTKRTGVVLPTGAGKSTVIGKLASNAYRSGKRVVALAHRAE 70 Query: 61 LVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEFSLLI 115 L+ Q A+ +DI + + H +VF S+Q++A + +A G +++ Sbjct: 71 LLFQMRRDMLAVDPTIPASDIGIVMAEHDDHHAPIVFASLQTLAHAKRRNAL-GRRDVIL 129 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 DE H G + + L H L G TAT +R KG I Sbjct: 130 WDEFHHAGAEG---FHATFEELGGYT-HAYLCGFTATMYRNEKGTIGL-----------G 174 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + + YE LR+ IKHG+L P + + D G F +L + + Sbjct: 175 DVIQKVSYEKDLRWAIKHGFLVQPRGKTVRIKNLDKLDDVRTVAGDFKNDELAEVM---E 231 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 +++ I E A + ++FAA+V+ A I + A +TG P AER+ + Sbjct: 232 AAVEYVVDAI-ELHARERTNIVFAASVDGAHMIADAINERGMTAEAVTGSMPHAEREQVY 290 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 + ++ + LV V VLT G D P D + + RPT S +LY Q+VGR LRL PGKTD L+ Sbjct: 291 DRYRTGVTKNLVTVMVLTEGADFPMCDTVVMARPTRSKNLYAQMVGRALRLFPGKTDALV 350 Query: 354 LDYAGNPH-----DLYAPEVGTPKGKSDNVPVQV-FCPACG 388 LD +G+ +L G P + D + CP C Sbjct: 351 LDLSGSTRAMKLVNLTDLSPGAPVEEVDEQGQAIAVCPTCD 391 >UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NXV3_9DELT Length = 1196 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 153/364 (42%), Gaps = 28/364 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHA 67 Q+EA+ A R ++V+ TG GK+ + A A R VL +AH +E++ Q A Sbjct: 415 QKEALAALAATRREGYRRGLVVMATGLGKTWLAAFDAGHCTARRVLFVAHREEILQQAAA 474 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGD 124 + + A +++++ ++F S+Q++AR +L F + F ++VDE H Sbjct: 475 TFLRIRPRARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFHHAA- 533 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + Y+++L H NP LLGLTATP R + I + +Y Sbjct: 534 --AATYRRLLRHF---NPRF-LLGLTATPERTDQSDILSLCDDNL------------VYS 575 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I L P + D+ + + NG F L +L R H + Q Sbjct: 576 CNLADGINAQLLAPFHYYGIYDQSVDYREIPWR-NGRFDPDALVNKLATLAR-ARHALEQ 633 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAE-RDVLIENFKAQRFRY 303 + R + F +V HA+ + A A R + + R R Sbjct: 634 WRQQGGKR--TLAFCVSVRHAEFMADQFSQAGIAAAAVYAGAAISRGDALARLRDNRLRV 691 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 + V + G D P +D + +LRPT+S L+ Q +GRGLR GK ++LD+ GN Sbjct: 692 IFAVDLFNEGVDLPEIDTVMMLRPTDSKILFLQQLGRGLRRVEGKEHLVVLDFIGNHRGF 751 Query: 364 YAPE 367 Sbjct: 752 LHKP 755 >UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus acidophilus RepID=Q5FLU2_LACAC Length = 864 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 91/383 (23%), Positives = 167/383 (43%), Gaps = 39/383 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+EA+ + + K A+I+ TG GK+ + ++ + R L + H ++++ ++ Sbjct: 227 QKEALGEIQSLRQNGKNKALIISATGTGKTYLGAFDVQKFKPKRFLYVVHREQILQKSRN 286 Query: 68 KYQAL--GLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHR 121 + + G +D +G R+ K +F +VQ++A+ NL F + F ++ DE H Sbjct: 287 SFYDVIGGAYSDYGIYSGNHREGLKSKYIFATVQTLAKDENLKKFARDAFDYILFDEAHH 346 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G +E L P LG+TATP R IY+ + + Sbjct: 347 LGSVQE------LKIFNYFQPQF-CLGMTATPERTDDFNIYKLFDY------------NI 387 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 YE+ L+ + L P + Y + L + A + L +R+ +I Sbjct: 388 AYEIRLQNALDQDMLCPFHYYGVEDYIY--------QDELINGATSLKRLVSDERVN-YI 438 Query: 242 ISQIMEFAATRKGVM--IFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 + Q + + + + IF + + A+ + L + A I+G ER+ ++ + Sbjct: 439 LQQTDYYGYSGRTLHGLIFCSRKKEAEILAEKLTEKGCPALAISGTDSIGEREKAVKKLE 498 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + +Y+V V V G D P ++ I +LR T+S ++ Q +GRGLR GK ++D+ Sbjct: 499 KGKVKYIVTVDVFNEGVDIPCINQIVLLRNTQSSIVFVQQLGRGLRKYKGKDYLTVIDFV 558 Query: 358 GNPHDLYAPEVGTPKGKSDNVPV 380 GN + Y V KS N Sbjct: 559 GNYDNNYLIPVALTGDKSHNRDQ 581 >UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q759H6_ASHGO Length = 691 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 156/371 (42%), Gaps = 35/371 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-------RVLVL 55 LR YQQ +D L + + L TG GK++V A L R R LVL Sbjct: 47 LPLREYQQACIDECLRCIADGRRRIGVSLATGGGKTVVFANLLNALRQEQQGRRFRALVL 106 Query: 56 AHVKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFS 112 H +EL Q + E ++ A + VV SV S+ R LD + +G Sbjct: 107 VHRRELAQQATRTLKRCAPELNVQVEMASQRANLETADVVVASVLSLIRRLDQYPRGSID 166 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 +I+DE H + Y ++L HL + + ++G +AT R + + + Sbjct: 167 AIIIDEAHHAAAE---SYLRVLEHLGAGTKDTKVPVIGFSATFERADRKALSRAM----- 218 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 + ++ + MI +L R V D ++ S F + L++ Sbjct: 219 --------DEIVFHKGILEMIDEKWLCEG-RFTTVDVDADLDGVEM-SGSDFQLSSLSQV 268 Query: 231 LKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 + +Q + +++ + K ++F V H K + L A A +T T Sbjct: 269 MNTEQ-VNRIVLNTYLHKRREHKLKSALLFGIDVSHVKSLCKLFQANGIEAQYVTAKTRP 327 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 ERD ++E+F+ L+N + T G D P++D + + RPT S +L Q++GRGLR Sbjct: 328 TERDSIVEDFRRGDIEVLMNCGIFTEGTDIPNIDCLLLCRPTRSRTLLVQMIGRGLRQHH 387 Query: 347 GKTDCLILDYA 357 K C ++D+ Sbjct: 388 SKDHCHVIDFV 398 >UniRef50_B1XQS3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQS3_SYNP2 Length = 471 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 107/371 (28%), Positives = 170/371 (45%), Gaps = 33/371 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LRPYQ + V L +H V LPTG GK+++++ +A R VL+L+H Sbjct: 4 FQLRPYQAQMVSEILGSLAQH-DSVVGQLPTGGGKTIILSAIANEFIKRGSPVLLLSHRD 62 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVD 117 ELV Q K A+ G I AG + SVQS+ R L + + F +IVD Sbjct: 63 ELVNQGADKLAAVSGQPVGIIKAGYPDNGDRL-IQSASVQSLVRRLHKYSPDRFGAIIVD 121 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 ECH + Y++IL H K +LG TATP R + L Sbjct: 122 ECHHT---TANTYRKILDHFEKA----YVLGFTATPCRGDGAGLDD-------------L 161 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F + ++ +I+ G+L+ L + G ++ L L + ++ Sbjct: 162 FSHMVTGPTIKQLIEVGHLSRYRYLAAEKSMV--VKGAKVRRGDYTSKSLA-ALNPRDQL 218 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIEN 295 ++S + + ++FA +++K + A I G+TP R +E Sbjct: 219 AADLVSSYFQHCDGMR-CLVFAIDRDYSKATAAMYQAHGVPAIHLDGETPQHIRKAALEA 277 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+A + + NV + T G D P V+ + + RPT+S+ L+QQ+ GR LR+APGK++ +I+D Sbjct: 278 FQAGEIKVVCNVGLFTEGTDLPAVEALQMARPTKSLGLFQQMTGRVLRVAPGKSEAIIID 337 Query: 356 YAGNPHDLYAP 366 +AGN P Sbjct: 338 HAGNWEMHGLP 348 >UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B0CPP8_LACBS Length = 635 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 169/390 (43%), Gaps = 49/390 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVI-AELARLARG-------RVLVLA 56 LRPYQ++ +DA L + + LPTG+GK+ V + L+RL R L++ Sbjct: 28 LRPYQEQCLDACLEALASGVSRIGVSLPTGSGKTTVFVSLLSRLVPSAWNPVATRSLIIV 87 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESH-GKVVFGSVQSV--ARNLDAFQGE-F 111 + EL Q+ ++ +L + + G K K S V + Q++ A L F Sbjct: 88 NSVELARQSASQVASLFPQWSVEIEQGAKYKASGFADVTIATYQTLKSAERLAKFDPHKL 147 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPH-------------LRLLGLTATPFRLGK 158 +IVDE H Y+++L H H + ++G +AT R Sbjct: 148 KAVIVDEAHHAA---APSYRKVLAHFHPDIKHPDPLFAAPSPPHRIPIVGFSATFSRHDG 204 Query: 159 GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 + ++F +Y MIK +L P + D + + Sbjct: 205 LAL-------------GSIFERIVYHRDFLEMIKEQWLCPVRVTSVR-ASIDLKSVTINT 250 Query: 219 N-GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AE 275 G F+ L + + I ++ ++ A+TRK ++F V H + Sbjct: 251 RTGDFNPTSLAHVINT-ETINELVVKTWIDRASTRKSTLVFCVNVAHVHTLTQSFRQFGV 309 Query: 276 DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 DA + TP AER L+ FKA F LVN A+LT G D P++D + I RPT S +++ Sbjct: 310 DARYLHAGTPIAERKALVAMFKAGHFPVLVNCAILTEGADIPNIDCVLIARPTRSRNVFA 369 Query: 336 QIVGRGLRLAPG--KTDCLILDYAGNPHDL 363 Q++GRG+RL+P K DC I+D G+ + Sbjct: 370 QMIGRGMRLSPNTDKGDCHIIDLVGSLSRM 399 >UniRef50_B9CV28 Phage deah-family helicase n=1 Tax=Staphylococcus capitis SK14 RepID=B9CV28_STACP Length = 445 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 51/403 (12%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 + LR YQ+E ++ + ++ P G+GK++ ++EL R A + RVL + H Sbjct: 1 MIPLRDYQEELLNGLYKSIANNNKNIMVQSPAGSGKTVTMSELTRRANNKKNRVLCIVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-FQGEFSLLIVD 117 +E+V Q +A + D G VQ++A + + ++I+D Sbjct: 61 EEIVNQIKNTMEANDVNWDYCE-------------VGMVQTIANRIKKNLIQKPDIIIID 107 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + YQ+I++ P ++G TATP+RL K Sbjct: 108 EAHHALSN---TYQKIISSF----PDTYIIGFTATPYRLNGQ-------------GFKES 147 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F+D + ++++I+ L P + + ++ ++ + + G FS+ + K +I Sbjct: 148 FQDIVLGKSVKWLIEKKRLAPYKYFSIDLINHEKLK---KQRGEFSQKSIEEAFNK--KI 202 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIEN 295 ++ ++A K + ++A VE +K + +A + G+ ER +++ Sbjct: 203 YGDVLKNYEKYAKGLKTI-VYAYNVESSKRVAEQFKNKGYNAYHLDGNAKTHERLEVVQK 261 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ L N + GFD P + +LRPTES+SL+ Q R +R K +I+D Sbjct: 262 FRDGEIDILTNAELFGEGFDIPDCHCVILLRPTESLSLFIQQTMRAMRYQLNKE-AIIID 320 Query: 356 YAGNPHDLYAPEVGTP-----KGKSDNVPVQVFCPACGFANTF 393 N P+ +GK ++ CG + F Sbjct: 321 LVNNWSTHQLPDSDRDWVAYFEGKPPREKSEIPAKVCGAEDCF 363 >UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTX7_MONBE Length = 457 Score = 285 bits (729), Expect = 3e-75, Method: Composition-based stats. Identities = 108/380 (28%), Positives = 176/380 (46%), Gaps = 40/380 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-ARLA-----RGRVLVLAH 57 TL +Q + ++ +L F +H + +PTG+GK++V + L ARL + +VLVLAH Sbjct: 66 TLYQHQTDCIEQSLTAFGQH-DRVAVSMPTGSGKTVVFSHLLARLPAPTPSQHKVLVLAH 124 Query: 58 VKELVAQNHAKYQALGLE--ADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQG-E 110 EL+AQ + +A DI V+ SV ++ R L F E Sbjct: 125 RTELLAQAKRQIEAHNPNLRVDIEGGHAHADVDAADVIVASVPTLGRPSSVRLSRFDPAE 184 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHL---TKVNPH-LRLLGLTATPFRLGKGWIYQFHY 166 F L+I+DE H S Y++IL H + NP+ ++L G +AT R + Sbjct: 185 FKLIIIDEAHHAA---ASTYKRILHHFFDENRSNPYDVKLWGCSATLQRHDGLGLDD--- 238 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 +F Y + L ++ G+L P + + V +++ + G + A+ Sbjct: 239 ----------VFDTIAYSVSLETLLDEGFLAPVRGMKV-DVDLKLDQVRIRK-GEYDPAE 286 Query: 227 LNRELKKQQRITPHIISQIMEFAAT-RKGVMIFAATVEHAKEIVGLLPAED--AALITGD 283 L+R + + ++ Q + R+ ++F + H ++ + A IT Sbjct: 287 LSRLVNTNAQ-NELVVEQWRRYCQNERRSTLVFGVDIRHVLDLQEQFKSGGVQAESITSL 345 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 TP AER +++ F F L+N VLT G D P VD + + RPT S +L+ Q++GRGLR Sbjct: 346 TPNAERKRILQAFSDGEFPVLLNCTVLTEGTDLPCVDALIMARPTRSHTLFVQMLGRGLR 405 Query: 344 LAPGKTDCLILDYAGNPHDL 363 L P K DCL++D A Sbjct: 406 LHPDKKDCLVIDVANTFASN 425 >UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMU8_9BACT Length = 1055 Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 166/379 (43%), Gaps = 38/379 (10%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARGR-----VLV 54 F +RPY Q+E +D H + ++V TG GK+++ A R R + L Sbjct: 316 FDIRPYPFQEEVLDRLEAEREVHGSFRNLVVSATGTGKTVIAAFDFRRFREQKPDATFLF 375 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGL-KRKESHGKVVFGSVQSVARNL--DAFQGEF 111 +AH +E++ Q+ +++ + + + + + HG+ VF S+QS+ R +F Sbjct: 376 VAHRQEILEQSLKQFRHILEDRNFGELWVAGSRPVHGQHVFASIQSLDRAAVGRISPEQF 435 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 +++DE H Y+++L L LLGLTATP R + ++ M Sbjct: 436 DYVVIDEIHH---GMAPTYRRLLETLK----PRILLGLTATPERSDGLDVRRYFNDRMAA 488 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 ++ L I L P + D+ L+ + G + DL L Sbjct: 489 ------------DIRLGEAIDRNLLCPFHYFGVTD-SVDYRNLRWE-RGQYDRRDLEHVL 534 Query: 232 KKQQRITPHIISQIMEFAAT---RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 ++ + E+ +G+ F V HA+E+ L +A ++ D+ Sbjct: 535 TGNDLRNRSVLRALREYCPDLSEVRGIG-FCVGVRHAQEMSDLFNRAGIPSASLSADSSR 593 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 RD + + ++++ V + G D P VD + LRPTES++++ Q +GRGLR Sbjct: 594 EVRDAVSAKISSGEWKFIFVVDLYNEGIDIPVVDTVLFLRPTESLTIFLQQLGRGLRQRR 653 Query: 347 GKTDCLILDYAGNPHDLYA 365 GKT +LD+ G+ H+ + Sbjct: 654 GKTHLTVLDFVGHMHEKFD 672 >UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO Length = 970 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 162/380 (42%), Gaps = 39/380 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A+ N R+ A+I+ TG GK+ + ++ R L + H ++++ Sbjct: 232 QKAALGEIANLRRKDINKALIISATGTGKTYLGAFDVKNFKPRRFLFVVHREQILEDALE 291 Query: 68 KYQAL--GLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHR 121 + + G + + +G + K VF + Q++++ NL F + EF ++ DE H Sbjct: 292 SFHKVIGGTKKEYGIFSGNDQSGIKAKYVFATSQTLSKDINLKQFAKDEFDYVMFDEAHH 351 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G SQY +I + LG+TATP R I++ + Sbjct: 352 LG---ASQYLKIFNYFEPKF----CLGMTATPERTDDFNIFKLFDY------------HI 392 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 YE+ L+ +++ L P + + Y+ + + L+ + +I Sbjct: 393 AYEIRLQDALENKMLAPFQYYGVEDYVYEDHVIS-------DTSSLSDLVA--DERVDYI 443 Query: 242 ISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 I Q + + +IF + + A+E+ L + A ++G RD ++E + Sbjct: 444 IEQTKYYGYSGDILHGLIFCSRNKEAEELAESLRQKGIQAKSLSGKDDVETRDEVVEELE 503 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + Y+V V + G D P ++ I +LR T+S ++ Q +GRGLR PGK ++D+ Sbjct: 504 KGKINYIVTVDIFNEGIDIPCINQIVLLRSTKSSIVFVQQLGRGLRKFPGKDYLTVIDFI 563 Query: 358 GNPHDLYAPEVGTPKGKSDN 377 G + Y + KS N Sbjct: 564 GAYDNNYMIPMALSGDKSHN 583 >UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax=Chlorobium limicola DSM 245 RepID=B3ECY7_CHLL2 Length = 967 Score = 284 bits (726), Expect = 7e-75, Method: Composition-based stats. Identities = 100/426 (23%), Positives = 176/426 (41%), Gaps = 32/426 (7%) Query: 8 YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL----ARGRVLVLAHVKELVA 63 Q+ A+ A ++VL TG GK+ + A A+ G VL L H E++ Sbjct: 145 PQRMALAALEEARNAGNAKGLVVLATGIGKTYLAAFDAKRFCAPTGGNVLFLVHNTEILK 204 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF---QGEFSLLIVDECH 120 Q+ K+ + +A K +V+F S+Q++A++ F +I+DE H Sbjct: 205 QSAEKFANVWPDATSGLYYGTEKTYEVQVLFASMQTMAKDNHQALFDSTHFDYIIIDESH 264 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 R + Y++ILT+ LLG+TATP RL + + F+ + + Sbjct: 265 RTPT---ASYKKILTYFKPKF----LLGITATPDRLDEQEVLPFYDNNL----------- 306 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 ++E+ R I G+L P + + D++ ++ ++ DL++ L +R Sbjct: 307 -VFEMGQREAIDSGFLVPFKYYGLKD-DIDYTNIRYN-GYRYNVQDLDKLLMIDKRDNG- 362 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 II + E A ++G+ F +++HA+ A I ER+ + F+ Sbjct: 363 IIEKFNELATVKRGIG-FCVSIKHAERCAKKFRDAGFSAIAIHSKMGKEEREDAVARFRK 421 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 V G D P V+ + LRPTES +++ Q +GRGLRL+P K +LD+ G Sbjct: 422 GDIDLAFVRDVFNEGVDFPDVETLLFLRPTESKTIFIQQLGRGLRLSPRKEALAVLDFIG 481 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDD 418 N + + + + + D +IE F + ED Sbjct: 482 NYKKAGKVREYLEGLNARDEKTLDKDGKPEYHYPYGCEVKFDEEVIELFKEQEGVTKEDL 541 Query: 419 DGHREQ 424 + + Sbjct: 542 LTNYIK 547 >UniRef50_C4L054 Type III restriction protein res subunit n=70 Tax=Bacilli RepID=C4L054_EXISA Length = 959 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 169/379 (44%), Gaps = 39/379 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q+ A+D ++ A++V TG GK+ + A ++ R R+L + H ++++ + Sbjct: 227 QRSALDGIDAVRQQGHQRALVVSATGTGKTYLAAFDVRRYEPKRMLFVVHREQILKKAIN 286 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRI 122 + + G D + K VF ++Q+++++ L F E F +++DE HR Sbjct: 287 DFHKVIGGNIEDYGILSGTSRVIDSKYVFATIQTISKDETLYQFAQETFDYILIDESHRA 346 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ++L + T LLG+TATP R +++ + + Sbjct: 347 G---ANTYQKLLEYFTPKF----LLGMTATPERSDGYDLFRLFDY------------NIA 387 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + ++ D G E ++ ++L +R+ II Sbjct: 388 YEIRLQEALEENMLCPFHYFGVTDLEID---------GEQKEIEVFQKLVSTERV-ERII 437 Query: 243 SQIMEFAATRKGVM--IFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 +I + + + + +F ++ + A + L A +TGD A+R + N + Sbjct: 438 EKIKYYGYSGEKLRGLMFCSSKKEAIYLSEQLNARGFKTCALTGDDTQAKRKQEVNNLEQ 497 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y++ V + G D P ++ + +LR TES ++ Q +GRGLR K ++D+ Sbjct: 498 GLLDYILTVDIFNEGIDIPSINQVVMLRQTESSIIFIQQLGRGLRKHKSKRYVTVIDFIA 557 Query: 359 NPHDLYAPEVGTPKGKSDN 377 N + Y + +S N Sbjct: 558 NYKNNYLIPIALSGDRSQN 576 >UniRef50_Q47CK6 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal n=3 Tax=Rhodocyclaceae RepID=Q47CK6_DECAR Length = 504 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 112/412 (27%), Positives = 178/412 (43%), Gaps = 39/412 (9%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARGR-VLVLAH 57 M+F LRPYQQ A R + LPTG GK+L + +A+GR V+ LA+ Sbjct: 1 MMFNLRPYQQSAEHKARLALARGLKRIALYLPTGGGKTLTATSIIIKAVAKGRKVVFLAN 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 K+LV Q A G+ I A + H +V+ S+ +V ++ + LLI+D Sbjct: 61 RKQLVNQTSAVLYRYGIPHGILQAENTARI-HEQVLVASIDTV--HVRGLPDDVGLLIID 117 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + E +Y+++L ++ +GLTATPF +G G Y +L Sbjct: 118 EAHGVAGSE--KYRKLLITYN----NVPAVGLTATPFAVGMGKHYDEL--------GGSL 163 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG--LFSEADLNRELKKQQ 235 F++ + ++ +I YL + + +G +++++L K + Sbjct: 164 FQELVVGATIKELIDAEYLVDVDIYAPSEPDMKGVKSTKGLDGLLDYNQSELEDAADKPE 223 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 I I+ + A ++ V FA ++ H+K IV A A I ER ++ Sbjct: 224 LI-GDIVGHWFKLARGKQTVC-FATSIPHSKHIVEQFQAAGVAAEHIDYHADDDERAAIL 281 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 F L NVA+L G+D P +++ + RPT S+ + Q+VGR LR A GK L+ Sbjct: 282 GRFAHGETMVLSNVALLAEGWDCPATEVMILARPTRSLIRFIQMVGRILRPADGKIKALL 341 Query: 354 LDYAGNPHDLYAPEVGTPKGKSDNVPVQ-------------VFCPACGFANT 392 LD++G+ L P P D P CP C F Sbjct: 342 LDHSGSTARLGHPCDDLPLELDDGKPKASSTEKKERAESLPKACPFCKFMRP 393 >UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PUJ3_MALGO Length = 667 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 168/385 (43%), Gaps = 45/385 (11%) Query: 4 TLRPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LRPYQQE VDA ++ R+H T + PTG+GK+ + EL R L+L Sbjct: 39 KLRPYQQECVDACIDALERKHLTRIGVSAPTGSGKTTMFLELVSRIFSREANTSHALILV 98 Query: 57 HVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQGE-F 111 + L Q + + + D+ + +VQ++ + L + F Sbjct: 99 NGITLAQQAAERAKRMFPHMTVDMDQGARHVASGEADITVATVQTLRQPKRLAKYNPHKF 158 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKV-----------NPHLRLLGLTATPFRLGKGW 160 +IVDE H Y +L+H K + ++G +AT R Sbjct: 159 KCVIVDEAHH---STSPSYLSVLSHFHKAIVPSNKHGSTTDATTPIIGFSATFTRHDGVA 215 Query: 161 IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG 220 + +F + ++ MI +L P R + +D S++ S+ Sbjct: 216 L-------------GLVFEEIVFHKDFLDMIDEQWLCPV-RFTLIRADFDLSKVSTTSS- 260 Query: 221 LFSEADLNRELKKQQRITPHIISQIMEFAA-TRKGVMIFAATVEHAKEIVGLL--PAEDA 277 + + L + + + ++ M+ A TR+ ++FA V H +V DA Sbjct: 261 DYVVSSLAHVVNRPD-VNELVVRSWMDLAGATRQSTLVFAVDVAHVHALVKEFQVRGIDA 319 Query: 278 ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 I ER+ L+ +F+ F L+N A+LT G D P +D + ++RPT+S +L+ Q+ Sbjct: 320 RGIHASMRLTERESLLASFQRADFPVLINCAILTEGADMPGIDCVLLMRPTKSRNLFAQM 379 Query: 338 VGRGLRLAPGKTDCLILDYAGNPHD 362 +GRG+R + GK+DCLILD GN H+ Sbjct: 380 IGRGMRKSAGKSDCLILDVVGNAHN 404 >UniRef50_UPI0001545E85 hypothetical protein ORF029 n=1 Tax=Pseudomonas phage 73 RepID=UPI0001545E85 Length = 551 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 131/422 (31%), Positives = 200/422 (47%), Gaps = 46/422 (10%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELAR-----LARGRVLVL 55 I+ R YQ EA + ++F+R V+ +PTG GKS+VIA R R+++L Sbjct: 4 IYVPRWYQDEAEYSIFDYFQRGGVGNPVVAMPTGTGKSVVIANFIRRIFGYWPNQRIMML 63 Query: 56 AHVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVA----RNLDAFQG 109 HVKEL+ QN K ++ I++AGL ++ +VFG VQSVA R L+ G Sbjct: 64 THVKELIEQNAEKLMSIWPTAPMGIYSAGLNSRDMIMPIVFGGVQSVAPAIKRGLEEDDG 123 Query: 110 EF---------SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW 160 LL++DECH + D E+S YQ I+ L K+NPHL+++G TATP+R+ G Sbjct: 124 RPAHLRHFGWRDLLLIDECHLLSDKEDSHYQYIIAELRKINPHLKVIGFTATPYRMKMGL 183 Query: 161 IYQFHYHGMVRGDEKALFRDCIYEL----PLRYMIKHGYLTPPERLDMPVVQYDFSRLQA 216 I + +F D Y++ +I GYL+P + D S++ Sbjct: 184 IT-----------DNGIFTDICYDITGVESFNRLIAEGYLSPL-IARPTRTEIDLSKVGV 231 Query: 217 QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED 276 + G F+ L + + + + + ++ E A R +IFA +++ + + ++ + Sbjct: 232 TA-GEFNSKQLEAAVDTDEVVF-NAVREMTEIAYDRSTWLIFATGIDNTEHVANVIQSYG 289 Query: 277 AAL--ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 + + P + FKA R LV+ LTTGFD P +D I L PT S + Sbjct: 290 LEVLPVHSKLPSKTNTERLRAFKAGELRGLVSGQKLTTGFDHPPIDFIGDLNPTLSPGKH 349 Query: 335 QQIVGRGLRLAP--GKTDCLILDYAGNPHDLY---APEVGTPKGKSDNVPVQVFCPACGF 389 Q +GRG R +P GK +CL D+AGN L P + GK C CG Sbjct: 350 VQKLGRGTRPSPDTGKQNCLYADFAGNVRRLGPINDPRIPNRPGKGGGDAPVRICDVCGV 409 Query: 390 AN 391 N Sbjct: 410 YN 411 >UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CSN2_METMJ Length = 1062 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 95/380 (25%), Positives = 168/380 (44%), Gaps = 38/380 (10%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARGR------V 52 IF +RPY Q+E ++ H +IV TG GK+++ A + R + Sbjct: 328 IFDIRPYYYQKEILERLKAERELHNNYKNLIVAATGTGKTVISAFDYKSLFQRPGEYPRL 387 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSV-ARNLDAFQGE 110 L +AH +E++ Q+ ++ + + + + + + + +F S+QS+ +RNL Sbjct: 388 LFVAHREEILKQSIQVFRGVLKDQNFGDLLVGGSEPAQIEHLFTSIQSLNSRNLPEITPP 447 Query: 111 --FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 + ++IVDE H YQ++L++ T LLGLTATP R I ++ Sbjct: 448 DYYDMVIVDEFHHAA---APSYQRLLSYYT----PGVLLGLTATPERTDNLDILEYFN-- 498 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 E+ L I L P + V D + + G + A+++ Sbjct: 499 ----------EKISAEIRLPEAINRKLLAPFHYFGVTDV-VDLDTVPWK-RGTYDPAEIS 546 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDT 284 R Q+ II + ++ ++ F +VEHA+ + A AA + + Sbjct: 547 RLYTGNQQRADLIIRAVQDYTTDLHEIIGLGFCVSVEHAEYMAAAFRAAGVPAACLHAGS 606 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ER + + ++ ++ V + G D P V+ I LRPTES++++ Q GRGLRL Sbjct: 607 SREERSTIQKRLVDRKIHFIFVVDLYNEGVDIPEVNTILFLRPTESLTVFIQQFGRGLRL 666 Query: 345 APGKTDCLILDYAGNPHDLY 364 + GK +LD+ GN + + Sbjct: 667 SDGKECLTVLDFVGNHNKNF 686 >UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria RepID=Q3B4P0_PELLD Length = 1065 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 98/380 (25%), Positives = 164/380 (43%), Gaps = 36/380 (9%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVL 53 F LRPY QQ +D N K +++ TG GK++V A + R+L Sbjct: 338 FFDLRPYGYQQVILDDIHNERNAGKQKHLVIAATGTGKTMVAAFDYKGFAKEHSGFPRIL 397 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSV-ARNLDAFQGEF 111 ++H +E++ Q A ++ + + + + +F +VQS AR LD ++ Sbjct: 398 YVSHREEILKQARASFRQVMRDGSFGEILAGGSEPRSFEHLFCTVQSWNARKLDHLPPDY 457 Query: 112 -SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 + +++DE H D YQ ++ H+ L LLGLTATP R I Sbjct: 458 YAYVVLDEAHHAAAD---TYQHLIAHVR----PLSLLGLTATPERSDGEDI--------- 501 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEADLNR 229 R D F +E+ L I+ L P +P + DFS LQ NG + + L Sbjct: 502 RNDFGGAF---THEIRLAESIERALLAPFHYFGIPDLDGLDFSSLQWTRNG-YDVSGLRH 557 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDTP 285 + ++ Q+ + + + + F +VEHA + A +++ ++P Sbjct: 558 LVDNNSARAQWVMGQVDRYVSDIRKIRALGFCISVEHAVFMAKWCRDNSIPAIVLSANSP 617 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 R +A+ + V + G D P VD + LRPTES++++ Q +GRGLRL Sbjct: 618 SELRHNAQRQLEAREINIIFTVDLFNEGVDIPSVDTVLFLRPTESLTVFLQQLGRGLRLH 677 Query: 346 PGKTDCLILDYAGNPHDLYA 365 K +LD+ H ++ Sbjct: 678 DEKPHLTVLDFIAPQHRKFS 697 >UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ55_9ACTO Length = 1087 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 152/389 (39%), Gaps = 44/389 (11%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR----------VL 53 T +Q+ + ++V TG GK+++ A + R R L Sbjct: 326 TPFEHQKIMLSELEAERENGHHRNLLVAATGTGKTVIAALDYKRLRERFMKNTGRSPRTL 385 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKE----------SHGKVVFGSVQSV-AR 102 +AH +E++ Q + + +++ + HG +VF S+QS+ ++ Sbjct: 386 FVAHRQEILKQARKTFIDVVKVSNLGISTTDNFALNSLDSRLLAEHGNLVFASIQSLHSK 445 Query: 103 NLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWI 161 L+ F +F L+I+DE H Y++++ H LLGLTATP R + Sbjct: 446 TLEGFPNDFFDLIIIDEFHHAS---APTYKKLIEHFAPQE----LLGLTATPERGDGTNV 498 Query: 162 YQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL 221 + G EL L + L P + D S+++ S G Sbjct: 499 AVEFFSG-----------RIASELRLWDALNADLLVPFHYF-VNSDDTDLSKVRL-SKGE 545 Query: 222 FSEADLNRELKKQQRITPHIISQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAEDAAL 279 + LN + I+ I + + + F A+VEHA + + Sbjct: 546 YDVKSLNDLYVGNEHRADIIMRAIRDKVPSPDTMRAICFCASVEHANYMADCFNRVNLPA 605 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 RD I + R + V + G D P VD + +LRPT+S +++ Q +G Sbjct: 606 AAVTAKTENRDTHITALREGTLRVICAVDIFNEGVDIPEVDTLLMLRPTQSSTIFLQQLG 665 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYAPEV 368 RGLR + GK +LD+ GN + + + Sbjct: 666 RGLRRSFGKDLLTVLDFVGNQNKDFKFDA 694 >UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Bacteria RepID=B0SD57_LEPBA Length = 1046 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 158/387 (40%), Gaps = 42/387 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA------ELARLARGRVLVLA 56 T R YQ+ ++ + R +IV TG GK+++ A + ++ +L +A Sbjct: 314 LTPRVYQERILEELIAERRLGNNKNLIVAATGTGKTVISAFDYRRYSIINNSKPSLLYIA 373 Query: 57 HVKELVAQNHAKYQALGLEADIFA----AGLKRKESHGKV-VFGSVQSV-ARNLDAFQGE 110 H KE++ Q + ++ + + + + + + +F S+QS+ ++ + G+ Sbjct: 374 HRKEILEQALSCFRMVLQDQNFGSLFVDGINPFSGTEAPLHIFASIQSINSKQIWKILGK 433 Query: 111 --FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 F+ +I+DE H S Y+ I + T LLGLTATP R+ I + Sbjct: 434 SFFNFIIIDEVHH---SSASSYRSIFSEFTPEI----LLGLTATPERMDGESILPDFNY- 485 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 E+ L ++ L P + Q NG F +L Sbjct: 486 -----------RITSEIRLPEALEERLLCPFHYFGITD-NIQLKGEQFWKNGKFDLIELE 533 Query: 229 RELKKQQRITPH----IISQIMEFAATRK--GVMIFAATVEHAKEIVGLLP--AEDAALI 280 I I + + + F +V+HAK + DA I Sbjct: 534 NVYTGDDITAKQRVNLIYKSINHYQPNSEELKAVGFCVSVKHAKFMAENFQKLGIDAETI 593 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 G+T R I +FK ++ + L V + G D P ++ + LRPTES++++ Q +GR Sbjct: 594 LGETDSETRRQRIIDFKQKKIKILFTVDIFNEGVDIPEINTVLFLRPTESLTIFLQQLGR 653 Query: 341 GLRLAPGKTDCLILDYAGNPHDLYAPE 367 GLR AP K +LD+ G H Y + Sbjct: 654 GLRHAPNKDALTVLDFIGQTHKKYRID 680 >UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobacillus fermentum RepID=D0DSQ0_LACFE Length = 975 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 166/393 (42%), Gaps = 38/393 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q A++ K ++V TG GK+ + A R A+ R+L LAH ++++ ++ Sbjct: 221 QTAALNEIEALRLAGKDRGLVVSATGTGKTYLGAFDVRAAKPKRMLFLAHREQILQKSCQ 280 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 ++ + G + ++ + K +F SVQ+++R +L F + F +++DE H Sbjct: 281 SFKNILGGDPDNFGLYTGGARDKNAKYLFASVQTLSREEHLHRFSPDDFDYILIDEVHHA 340 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ+I+ + T LG+TATP R I+ ++ + Sbjct: 341 GAE---SYQRIMDYFTPKF----FLGMTATPERSDDFNIFNLFHY------------NVA 381 Query: 183 YELPLRYMIKHGYLTPPERLDMPVV------QYDFSRLQAQSNGL---FSEADLNRELKK 233 YE+ L+ ++ L P + + + + + + + G + EL Sbjct: 382 YEIRLQQALELNMLAPFHYVGLTDYAFADQYEEEVDQYRNRKQGSKPSRKQEQRAVELLT 441 Query: 234 QQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 + +I+ Q + + ++F ++V A+ + A A ++G G R Sbjct: 442 SKERVNYILEQTDYYGYSGPVLHGLVFCSSVAEAEALARAFTAAGHPAKALSGADNGDRR 501 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 ++ + Y++ V + G D P V+ + LR T+S +Y Q +GRGLR PGK Sbjct: 502 RQVVHELENGLIEYIITVDIFNEGIDIPCVNQVVFLRNTQSAIVYVQQLGRGLRKYPGKE 561 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 +LD+ GN + Y + S + Sbjct: 562 YVEVLDFIGNYKNNYMIPIALTGDNSYSKDQAR 594 >UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBM5_9BACT Length = 553 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 171/384 (44%), Gaps = 44/384 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---------LARGRVLVL 55 LRPYQ E + R ++ +PTG GK++V + + ++L++ Sbjct: 36 LRPYQAEMKHNVYGLWDR-IDNVMLQMPTGTGKTIVFTSVVKDILRWCNLHSRESKILIV 94 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQS-VARNLDAFQGE--FS 112 AH +EL+ Q K + + +G K + S+Q+ ++R F Sbjct: 95 AHRRELIRQASRKLG--NIPHGVIVSGEKLDLDKS-IQVASIQTFMSRRHYEIMRRVQFD 151 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +I+DE H YQ++ P+ + LG+TATP+R M Sbjct: 152 FIIIDEAHHC---MAPGYQKLWEMF----PNSKKLGVTATPWR-------------MSHC 191 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL----QAQSNGLFSEADLN 228 +LF D + + + + GYL + + + + + ++G + +++L+ Sbjct: 192 GFTSLFGDIVLAKSIEWFVNQGYLANYDYISIKPTSEVQHAINGIDRMGADGDYLDSELS 251 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPG 286 + K + I + ++A +KG+ I+A +HA I L + ++ I G TP Sbjct: 252 AVIDKAK-IRAGLYKSYEKYAKGKKGI-IYAIDRKHASNICDLYATKGVSVCMIDGTTPT 309 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 AER+ I +F +VNV + + GFD P ++ I + RPT+S+SLY Q VGRGLR++ Sbjct: 310 AEREQKIADFANGSIEVIVNVNIFSEGFDCPDIEFIQLARPTKSLSLYLQQVGRGLRISK 369 Query: 347 GKTDCLILDYAGNPHDLYAPEVGT 370 GK +ILD G + P Sbjct: 370 GKETTIILDNVGLYNRFGTPMANR 393 >UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax=Fusobacterium RepID=Q8R5Z3_FUSNN Length = 942 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 92/378 (24%), Positives = 164/378 (43%), Gaps = 38/378 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q +A+ L R+ A+++ TG GK+ + A + A+ ++L +AH K ++ ++ Sbjct: 214 QVQAL-KNLEETRKENDRALLISATGTGKTYLSAFDVKQAKAKKILFVAHRKVILERSKI 272 Query: 68 KYQALGLEADIFAAGLKRKESHGK-VVFGSVQSV--ARNLDAFQGE-FSLLIVDECHRIG 123 YQ + ++ + + VVF VQ++ +NL+ F + F +I+DE H G Sbjct: 273 SYQRILKNKNMEIFDNNFQINDKDEVVFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGG 332 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ I + LLG+TATP R IYQ + + Y Sbjct: 333 ---AKTYQSIFEYFKPKF----LLGITATPERTDDFNIYQLFNY------------NVAY 373 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ +K L P + + D + +++ ++L R+ HI+ Sbjct: 374 EIRLQDAMKEELLCPFHYFGISDIVIDGESIDEKTS--------LKKLTSDTRV-KHILE 424 Query: 244 --QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFKAQ 299 + ++ R +IF + VE AK +V + I + + ER+ I + Sbjct: 425 NSKYYSYSGERLSCLIFVSKVEEAKILVEKFLEQGVKAIALSSENSDNEREEAIRKLEQG 484 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 Y+ +V + G D P V+ + +LRPT S +Y Q +GRGLR K ++LD+ GN Sbjct: 485 EIEYITSVDIFNEGVDIPCVNQVILLRPTTSAIVYIQQLGRGLRKHKNKDYTVVLDFIGN 544 Query: 360 PHDLYAPEVGTPKGKSDN 377 + + + S + Sbjct: 545 YEKNFLIPIAISQNNSYD 562 >UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2R4_9BACT Length = 572 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 114/394 (28%), Positives = 192/394 (48%), Gaps = 54/394 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKEL 61 FTLR YQ A DA +++H++ + VLPTG GK+++ AE+ R + GR LV+AH +EL Sbjct: 4 FTLRDYQAAAADAVEEKWKKHQS-TLCVLPTGCGKTVLFAEIIRRRQPGRALVIAHREEL 62 Query: 62 VAQNHAKYQAL-GLEADIFAAGLKRKES---HGKVVFGSVQSVA-----RNLDAFQG-EF 111 + Q K +A+ GLEA++ A S VV S+Q++ R ++ F+ +F Sbjct: 63 IVQAVKKIEAVTGLEAEVEMAEQVASNSLFHKTPVVVASIQTLVSGGNRRRMERFRPEDF 122 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 ++VDE H + Y+ +L + + N +LLG+TATP R + + Sbjct: 123 DTIVVDEFHHA---TAASYRAVLEYFLR-NEKAKLLGVTATPDRADQAAL---------- 168 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 + ++ +R I G+L P E+ + + D+S++ + G + A+L + Sbjct: 169 ---GLVCESVAFDYEVRAAIDDGWLVPVEQQMVTIDGLDYSQIHTTA-GDLNSAELA-SV 223 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA---ALITGDTPGAE 288 +Q+R+ + +E A +R+ + +F ++V+ A+ +L A + G T E Sbjct: 224 MEQERVMHGTCAATIEIAGSRQTI-LFTSSVKQAEMACNILNRHRAGIAQFVCGATDREE 282 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R ++ + L NV V T GFDAP V++I + RPT+S +LY Q+ GR R PG Sbjct: 283 RRKIMRRVLDGSTQILCNVGVATEGFDAPGVEVIVMGRPTKSRALYAQMAGRATRPLPGV 342 Query: 349 TD-------------------CLILDYAGNPHDL 363 D CL++D+ GN Sbjct: 343 VDGPATPAERRAAIAASAKKACLLVDFVGNSGRH 376 >UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBM3_DESAH Length = 1040 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 94/377 (24%), Positives = 155/377 (41%), Gaps = 36/377 (9%) Query: 8 YQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIA-----ELARLARGRVLVLAHVKEL 61 YQQE +D H ++V TG GK+++ A R + R+L +AH +E+ Sbjct: 315 YQQEILDTLKAERALHHRWRNLVVAATGTGKTIIAAFDFKQSFERPGQKRMLFVAHREEI 374 Query: 62 VAQNHAKYQALGLEADIFAAGLKRK-ESHGKVVFGSVQSV-ARNLDAFQGE--FSLLIVD 117 + Q+ ++ + + + + H + +F SVQ++ AR L F ++VD Sbjct: 375 LVQSRGVFRNILRDHNFGELWVGNHRPDHLEKLFVSVQTLNARALWDQVPPDFFDYIVVD 434 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H YQ++L + T LLGLTATP R I + + Sbjct: 435 EFHH---GAAPSYQRLLDYFTPKI----LLGLTATPERADGKDILAWFH----------- 476 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK-QQR 236 E+ L I L+P + + D+S ++ Q G + L + L Sbjct: 477 -GRICSEIRLPDAINQKLLSPFQYFGISDC-VDYSHVKWQRGG-YDRNGLEKLLITGDDI 533 Query: 237 ITPHIISQIMEFAATRKGVM--IFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 II + E F + HA + A A +T +T R Sbjct: 534 RARLIIEKAKEILLDVSAARGICFCVSQAHAGYMAEKFQAAGISAMALTAETARDVRRAA 593 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 ++ + + +L V + G D P +D + LRPTES++++ Q +GRGLRL GK Sbjct: 594 VKRLQQRDVNFLCVVDLFNEGVDIPEIDTVLFLRPTESLTVFLQQLGRGLRLCEGKEHLT 653 Query: 353 ILDYAGNPHDLYAPEVG 369 +LD+ G H + E+ Sbjct: 654 VLDFIGQAHQKFNFEIR 670 >UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3G7_ERYRH Length = 950 Score = 281 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 164/384 (42%), Gaps = 38/384 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA++ N ++ T A+++ TG GK+ + A ++ + ++L + H +++ Sbjct: 220 QSEALENLKNFRKQGATKALVISATGTGKTYLAAFDVKAIKPKKMLFIIHREQVAKDAMN 279 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 +Q++ + + K+ +F ++Q+++R NL F Q EF +++DE HR Sbjct: 280 TFQSIISDRSMGLFSGNYKDDQFDFLFTTIQTISRPQNLQKFKQNEFDYIVIDEAHR--- 336 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + Y ++ + LG+TATP R +++ + + YE Sbjct: 337 SVANSYLNVMEYFKPKF----FLGMTATPERSDSLNVFELFDY------------NIAYE 380 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS- 243 + L+ ++ L P + +Q D + S +L + RI HI+ Sbjct: 381 IRLQKALEENMLVPFHYFGITDLQIDGEIINDHSQFG--------QLVSEDRI-EHILKY 431 Query: 244 -QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIENF--KA 298 + + ++F +T + A E+ L I+ G+ ER+ I Sbjct: 432 TKYYGHCGNKLKGLMFCSTNQEASELSKKLNIRGIRTISLSGENSQEERENAIVRLTSDD 491 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y++ V + G D P ++ + +LR TES ++ Q +GRGLRL+ K +++D+ G Sbjct: 492 GDLNYILTVDIFNEGIDIPEINQVVMLRSTESSIVFIQQLGRGLRLSKNKDYVVVIDFIG 551 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQV 382 N + Y + +S + Sbjct: 552 NYSNNYMIPIALSGNRSYSKDEIK 575 >UniRef50_Q3V5F4 Gp41, helicase n=1 Tax=Corynebacterium phage BFK20 RepID=Q3V5F4_9CAUD Length = 537 Score = 281 bits (718), Expect = 6e-74, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 173/369 (46%), Gaps = 36/369 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVKE 60 LR YQ EAV+A L + +VLPTG GKS VIA+LA +A RV++LAH +E Sbjct: 7 ELRAYQTEAVNAVLGEWVDG-KRTCVVLPTGTGKSTVIAKLAEIAYKAGQRVILLAHRRE 65 Query: 61 LVAQNHAKYQALGLEA---DIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQGEFSLLI 115 L+ Q + + + DI +R + +V S Q++ A L A GE ++++ Sbjct: 66 LLDQMAQSIRMVAPQIPTDDIGFVQAERDQPERPIVCASFQTLMSASRLQAV-GERTVVL 124 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H S Y +IL+ G TAT R G Sbjct: 125 VDEVHH---SAASTYAEILSA--PNFDGAFKAGFTATLQRADGGLA-------------- 165 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + +E LR+ + G+L PP+ + + D + ++ + NG ++ DL+ + Sbjct: 166 DYWDSIAFERDLRWALDEGFLVPPQGKTVVIPGLDTTNIKLR-NGDYAAGDLSEVMMSS- 223 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 + I A R+ ++IF A VEH + + L A AL+ G T ER L Sbjct: 224 --VDSTVEAIHTHAPDRR-MLIFGAGVEHCQALSDTLSATGIHTALVVGSTSSEERTELF 280 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 E F A R + LV V VLT G D P D + + RPT S L+ Q+VGR LRL K D L+ Sbjct: 281 EEFTAGRVQALVTVQVLTEGTDLPACDCVVLARPTRSAVLFTQMVGRALRLHQDKNDALV 340 Query: 354 LDYAGNPHD 362 LD AG+ D Sbjct: 341 LDLAGSTRD 349 >UniRef50_C5UXP6 Type III restriction enzyme, res subunit n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXP6_CLOBO Length = 538 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 37/370 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQ ++ + + V+ + TG GK++++A +A+ GR L++ EL Sbjct: 1 MKLRDYQITCLENVRE-MKLGEKK-VVHVATGGGKTVIMASIAKETIGRTLIIVGQTELR 58 Query: 63 AQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVA-----RNLDAFQ-GEFSLLI 115 Q K + + G + + + E +V + QS+ R D + G F +++ Sbjct: 59 KQTIDKLKKVCGEDVSVGSVQGNLDEIDKDIVVSTRQSLTHPKSHRMNDILENGNFEVVM 118 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DECH+ Q+ + V + +++G TATP+ + K Sbjct: 119 IDECHQAVG-------QVKKIIDIVGDNCKVIGFTATPY----------------NKEMK 155 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 ++F +YE + +I GYL P+ + D S ++ G F ++ L + Sbjct: 156 SIFDGFVYEKDILSLIDEGYLCQPKCFRV-NTNCDISSVKT-VGGEFVQSQLENAVNNDD 213 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 R I+ +E A RK ++FA+ ++HA + A I ER+ + Sbjct: 214 R-NTLIVKAYLEKANDRKNCIVFASGIDHATNLAKCFNVNGISAKSIDSTVDSIEREQTL 272 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 +FK +F+ LVNVA+LTTGFD ++ + + RPT+S LY Q +GRGLR+A GK DCLI Sbjct: 273 NDFKEGKFKILVNVAILTTGFDFEELECVIMARPTKSKILYTQCIGRGLRIADGKKDCLI 332 Query: 354 LDYAGNPHDL 363 LD N Sbjct: 333 LDIVDNVKQF 342 >UniRef50_Q9T1H9 Putative DEAH-family helicase n=1 Tax=Lactobacillus phage phiadh RepID=Q9T1H9_9CAUD Length = 455 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 94/404 (23%), Positives = 172/404 (42%), Gaps = 58/404 (14%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAH 57 M +R YQ++ +D + +I P G+GKS+ +AELA+ RVL + H Sbjct: 1 MDMPIRSYQKKLIDDLRLSLKHGHKNVLIQSPAGSGKSITMAELAKRITSNGERVLFVVH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +ELV Q + + G+ ++ VQ+ +R L+ + ++VD Sbjct: 61 RRELVKQIKNTFSSWGVNMNLCEIY-------------MVQTASRRLEKL-MTPNYILVD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H Y++I H + +LG TATP RL K + Sbjct: 107 EAHH---SLAKTYKKINNHFK----NAHILGFTATPVRLSGK-------------GFKDI 146 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 + D + + ++I++ YL P + ++ D ++L+ S G ++ + + + Sbjct: 147 YDDLVLGPKISWLIENHYLAPYTYYSVNLI--DQTKLKKSSTGDYTHKSIENA--GKNIV 202 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 +I +FA K + I++ +V ++I + A + G T +RD +++ Sbjct: 203 YGDVIQSYHKFANNTKAI-IYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAMQD 261 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + + LVN + G D P + + +LRPT+S+SL+ Q R +R P K +I+D Sbjct: 262 FRDGKIKILVNAELYGEGVDVPDCETVIMLRPTQSLSLFIQQSMRCMRYQPDKQ-AIIID 320 Query: 356 YAGNPHDLYAPEVGT------------PKGKSDNVPVQVFCPAC 387 N P++ +G SD + + CP C Sbjct: 321 QVANYTRFGLPDMDRVWTLEDRAKHPQREGGSDGIAI-KTCPNC 363 >UniRef50_C2FEA8 Helicase n=4 Tax=Bacilli RepID=C2FEA8_LACPA Length = 458 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 103/403 (25%), Positives = 174/403 (43%), Gaps = 58/403 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L PYQ+E V+ ++V P G+GKS++IAE+ARLA G V+ H Sbjct: 1 MFQLHPYQKELVNQAREKLADGHKSVLLVSPAGSGKSVIIAEIARLAVMKGGHVMFTVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KEL+ Q + A G++ K +V +AR L + +L+I DE Sbjct: 61 KELIDQITKTFIANGVDLS-------------KCTIMTVGRIARRLGKL-PKPNLIITDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H Y +I + LG +A+P+RL + ++ Sbjct: 107 THH---SLAKTYLKIYE----FYKDIPRLGFSASPWRLSGKGLGD-------------VY 146 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++++I+H YL P + ++ D +L+ S G +S ++ + I Sbjct: 147 ETMVEGPTVKWLIEHHYLAPFDYYAPTLI--DVEKLKKSSTGDYSTKSIDEA--NTKMIF 202 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 ++S + A R+ + ++A ++E +K + A A + TP RD + F Sbjct: 203 GDVVSHYQKLANGRQAI-VYAHSIEESKRVAATFNAAGISAIHVDSKTPALNRDEAMTAF 261 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 K + R + NV +++ GFD P ++ +LRPT S+ L Q RG+R P K +I+D+ Sbjct: 262 KDGKIRIISNVDLISEGFDVPECGVVIMLRPTASLVLDIQQSMRGMRYRPNKR-AIIIDH 320 Query: 357 AGNPHDLYAPEVGTP------------KGKSDNVPVQVFCPAC 387 N + P+ +GKSD P CP C Sbjct: 321 VANVYRFGLPDTDREWSLEDRPKQEKHRGKSDG-PAIKSCPKC 362 >UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bacteria RepID=A7FVD5_CLOB1 Length = 968 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 166/394 (42%), Gaps = 36/394 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A++ + + A+++ TG GK+ + ++ ++L L H +E++ ++ Sbjct: 230 QKRALENLKRLRKSEEDKALVIAATGTGKTYMSAFDVIEYNPKKMLFLVHREEILRRSEK 289 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDECHRIGD 124 ++ L K +F ++Q++ + F+ EF +++DE H I Sbjct: 290 TFKKLVKNKNKTTGLLTGNSKAIDSDYLFSTIQTMGKQFQNFKKDEFEYIVIDEAHHISS 349 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y++++ + LLG+TATP R I+ + + E Sbjct: 350 ---PLYERVINYFEPKF----LLGMTATPERCDGKNIFDIFNNNVAL------------E 390 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 + LR ++ + P + ++ D S ++ Q ++ + L +R+ II Sbjct: 391 VRLREALELELVIPFHYFGITDIEDIDLSDVKVQ-----DLDEIAKRLNVNKRV-DFIID 444 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQ 299 ++ + ++ + F ++HAK + + +TG+ ER++ I+ + Sbjct: 445 KMNFYGHDGEKRKCVGFCVNIDHAKYMADEFNKRGIHSVFLTGNNSANERELYIKKLEDD 504 Query: 300 R--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + + V + G D P ++LI +LRPT S ++ Q +GRGLR P KT +LD+ Sbjct: 505 KDDLEVIFTVDIFNEGIDIPSINLILMLRPTNSPIVFIQQLGRGLRKYPNKTFLTVLDFI 564 Query: 358 GNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFAN 391 GN + + + + + A F+N Sbjct: 565 GNHNKTFLIALALNGSRYYDKDSLKVAVATQFSN 598 >UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax=Bacilli RepID=C6CS24_PAESJ Length = 1053 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 157/383 (40%), Gaps = 40/383 (10%) Query: 1 MIFTL----RPYQQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELARL------AR 49 M F YQ+E ++ + ++V TG GK+++ A R R Sbjct: 318 MFFKFSIQPYDYQKEILEKLEAERTLYGRHKNLLVAATGVGKTVISAFDYRRFAQRNPQR 377 Query: 50 GRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVARN-LDAF 107 R+L +AH +E++ Q+ ++ + + + + ++ + +F S+QS+ L Sbjct: 378 ARLLFVAHREEILKQSLDTFRFILKDLNFGELHVGGNQAKSLEHLFISIQSLNSMKLTEI 437 Query: 108 --QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH 165 + +IVDE H YQ++L H LLGLTATP R+ + ++ Sbjct: 438 TTPDYYDFIIVDEFHHAA---APSYQKLLAHYEPQI----LLGLTATPERMDGKDVLRYF 490 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA 225 + E+ L I L P + + D S+++ G + ++ Sbjct: 491 DDTIAA------------EIRLTDAIDRKLLCPFQYFGVSD-HVDLSQVKWTRRG-YDQS 536 Query: 226 DLNRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAEDAALI--T 281 +L + I++ + ++ + F VEHA + + I Sbjct: 537 ELENLFTNNKIRATQILNSLRKYVTDLDEVKGLGFCVGVEHALYMAKVFNEAGIPSISLH 596 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G + +RD + + + V + G D P V+ + LRPTES++++ Q +GRG Sbjct: 597 GGSSDEDRDQVKGRLARGEIKMVFVVDLYNEGVDIPEVNTVLFLRPTESLTVFLQQLGRG 656 Query: 342 LRLAPGKTDCLILDYAGNPHDLY 364 LRLA GK +LD+ G H Y Sbjct: 657 LRLAEGKECLTVLDFIGQAHKDY 679 >UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R463_PICPG Length = 682 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 165/382 (43%), Gaps = 42/382 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------RLARGRVLVLAHV 58 LRPYQ++ +++ + R +T + L TG GK+++ + L + + L+L H Sbjct: 60 LRPYQKDCIESIMKVIRGGETRLAVSLATGGGKTVIFSNLLNEIPSNKYNGQKTLILVHR 119 Query: 59 KELVAQNHAKYQALGLEADI---FAAGLKRKESHGKVVFGSVQSVARN-------LDAFQ 108 KEL Q + I A + VV SV ++ARN D Sbjct: 120 KELADQAARTIKRFFPHMKIEIDMAGLRPTHDDDVDVVVASVPTLARNNSKNPRLFDYDP 179 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPH----LRLLGLTATPFRLGKGWIYQF 164 EF +I+DECH D Y +IL + ++ + ++G +AT R + + Sbjct: 180 NEFKAIIIDECHHAISD---SYIKILQYFNALSKDSSDGIIVVGFSATLKRHDAQPLDK- 235 Query: 165 HYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSE 224 +F YE L M+K GYL+ + + ++ G + Sbjct: 236 ------------VFNTIAYEKDLISMVKEGYLSELSITKVEGA-FSLDDVKLDKTGDYQL 282 Query: 225 ADLNRELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAED--AALI 280 L + + ++ +E K + F +H +++ L A A + Sbjct: 283 QSLESSVNT-AAVAELVLKTYLERKKVLGLKSSLFFCVNKQHVQDLCELFCANGIKAGFV 341 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 +G+TP ER+ +I+NF + L+N V T G D P++D I +LRPT+S L Q++GR Sbjct: 342 SGNTPLLEREQIIKNFIDGKLNVLMNCNVFTEGTDIPNIDSIFLLRPTKSRPLLSQMIGR 401 Query: 341 GLRLAPGKTDCLILDYAGNPHD 362 GLRL GKT C + D+ G H Sbjct: 402 GLRLHSGKTKCYVTDFVGTTHS 423 >UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KCW6_CRYNE Length = 706 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 100/400 (25%), Positives = 170/400 (42%), Gaps = 60/400 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---------------RL 47 TLR YQ+ A+ A L+ + + PTG+GK+ + L R Sbjct: 64 ITLRSYQEAAISACLDALQSGSRRLGVSSPTGSGKTTIFLSLIPRVPFYASRGNDSHPRD 123 Query: 48 ARGRVLVLAHVKELVAQNHAKYQAL-GLEADIFAAGLKRKESH-GKVVFGSVQSVAR--N 103 +G+ L++ + EL Q + L G E I KR S V + Q++ Sbjct: 124 GKGQTLIIVNSVELAEQTQKSAERLLGDEWTIEIEQSKRVASGLADVTIATYQTLNNPDR 183 Query: 104 LDAFQG-EFSLLIVDECHRIGDDEESQYQQILTHLTKVNP---------------HLRLL 147 L F +F L+IVDE H Y ++L + + + ++ Sbjct: 184 LSKFDPSKFKLVIVDEAHH---SAAPSYLRLLHYFNEDVKIPKSPQAPSPHLHGFKVPII 240 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV 207 G +AT R + ++ + F + ++ ++ M+ +L P + + +V Sbjct: 241 GFSATFSRADQHSLH-------------SAFEEIVFHRDMKDMLSEKHLAPAK---LTIV 284 Query: 208 QYDFSRLQAQ-SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAK 266 + D + + S+G F A L R++ + I I+ + A+ R+ ++F +EH Sbjct: 285 KADLELDEVETSSGDFKNAALARKVNTTE-INELIVRTYLHRASERRSTLVFCVDLEHVS 343 Query: 267 EIVGLLPAE--DAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAI 324 + + DA ++ + R I F F L+N VLT G D P +D I + Sbjct: 344 ALTQTFRSAGIDARSVSSKSKPEMRKATIAAFGKGEFPVLINCEVLTEGTDIPQIDCILL 403 Query: 325 LRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHD 362 RPT+S +L Q+VGRGLRL+P GKTDC I+D + + Sbjct: 404 ARPTQSRNLLVQMVGRGLRLSPESGKTDCHIIDLVDSVAN 443 >UniRef50_Q6VSX2 Putative helicase n=3 Tax=Vibrio phage phi16 RepID=Q6VSX2_9CAUD Length = 718 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 108/455 (23%), Positives = 192/455 (42%), Gaps = 71/455 (15%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 +F LR YQQ A + + + ++++ + VLPTGAGK+++ +++ G + H +E+ Sbjct: 1 MFKLRDYQQLAYNRIMAAWEKYRS-VLAVLPTGAGKTVIFSKIIHDHTGAAAAIVHRREI 59 Query: 62 VAQNHAKYQALGLEADIFA---------------AGLKRKESHGKVVFGSVQSVARN--- 103 VAQ + G++ + A G + + SVQ++ Sbjct: 60 VAQISLSLASFGVKHRVIAPAKTLKTIRKKHFKKYGKSFIDPNAPCGVVSVQTLTSKSTL 119 Query: 104 ----LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + + + +L + DE H + Q I V + +LL +TATP R Sbjct: 120 NNAAIMRWVNQVTLGVYDEGHHYVE------QGIWAKGVHVFENAKLLFVTATPERADGV 173 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPL-RYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 + + F + + E P ++I++G+L+ P D L Sbjct: 174 GLGKGEGG----------FAEVMIEGPTTHWLIENGFLSKFVY-RAPQTDIDLRDLATGK 222 Query: 219 NGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AED 276 NG F+ L + + I ++ ++ ++ + +FA VE A+++ Sbjct: 223 NGDFNAKALKARVV-ESHIVGDVVQHYRKWGENKRAI-VFATDVETAEQMAEEFRRAGYT 280 Query: 277 AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQ 336 AA ++G+T ERD L+ F+ + LVNV + GFD P V+ + + RPT+S++ + Q Sbjct: 281 AASVSGETEQGERDHLLAQFEEGAIQVLVNVDLFDEGFDVPAVECVILARPTQSLAKFLQ 340 Query: 337 IVGRGLRLAPGKTDCLILDYAGNPHDLYAPE-------VGTPKGK---SDNVPVQ----- 381 +VGR LR+ GK +I+D N P +G KG+ D +P + Sbjct: 341 MVGRALRIMEGKEYAIIIDPVRNWERHGPPTAVRNWSLMGREKGQGSGGDTIPQKTCDAC 400 Query: 382 --------VFCPACGFANTFWGKTT---ADGTLIE 405 CP CG N ++ DG L+E Sbjct: 401 TVPYEAYYKACPYCGNVNEIADRSAPDKVDGDLVE 435 >UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1X3_9MICC Length = 1075 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 163/377 (43%), Gaps = 37/377 (9%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVLVLAHVKE 60 P+Q ++ N + + + V TG GK++ A R + ++L +AH KE Sbjct: 323 PHQVRMLEEMQNARSKGRHRNLAVAATGTGKTVFSALDYRRLCEQSGKKLKLLFIAHRKE 382 Query: 61 LVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVA-RNLDAFQGE-FSLLIVD 117 ++ Q + + L+ + +K + + VF ++Q+++ L+ + + F ++I+D Sbjct: 383 ILDQARRTFGDVMLKGNFGELLTGGKKPEYNEAVFATIQTLSGAALENYAPDYFDVIIMD 442 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 ECH I + + + ++ + +GLTATP R I ++ G V Sbjct: 443 ECHHI---KAASWDKVFNYFE----PREFIGLTATPEREDGVNIADKYFDGYVAT----- 490 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ-- 235 + L ++ L P + + D R+ + G + E L K + Sbjct: 491 ------SIRLWDALEDHLLVPFQYFGIAD-GTDLRRINVR-GGKYDENALENLYTKDEAE 542 Query: 236 RITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 R I+ ++ E R + F +V+HA+ + A + G R Sbjct: 543 RRLRIIVEELREKVDNPLRMKALGFCVSVKHAEYMAQKFNEVGIPADFLVGTDSAERRAE 602 Query: 292 LIENF--KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 +++N +A + V + G D P VD + +LRPT+S++L+ Q +GRGLR AP K+ Sbjct: 603 VMKNLADEAHELTTIFTVDLFNEGVDIPSVDTLLMLRPTQSLTLFLQQLGRGLRRAPLKS 662 Query: 350 DCLILDYAGNPHDLYAP 366 +LD+ G+ + + Sbjct: 663 VLTVLDFVGHQNKNFMI 679 >UniRef50_C2KJC2 Helicase n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KJC2_LEUMC Length = 515 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 100/465 (21%), Positives = 180/465 (38%), Gaps = 72/465 (15%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAH 57 M F L YQ + + ++V G+GK+ +++E+ARL RV V+AH Sbjct: 1 MPFQLYDYQNKLLSEARQSLANGSKSVMVVSAAGSGKTAMMSEMARLTTSHHKRVWVMAH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 KEL+ Q ++ ++ + V +V ++ ++ L+I D Sbjct: 61 RKELINQIRDSFKFNEIDFEY-------------AVIKTVGTMVHRMNNMAPP-DLIIFD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y+++ P + +G TATP R+ + Sbjct: 107 EAHH---SIANTYRKVRDKF----PDVPTIGFTATPCRMSGVGFTD-------------M 146 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 + D + + ++I+H L P + + D ++++ S G + ++ + + Sbjct: 147 YDDIVTGPSIPWLIEHDKLAPFDYYVPTFI--DINKIKFNSAGNATADSMHEAVGDELAT 204 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 I Q + A + + + +V+ + IV L +A I TP RD +++ Sbjct: 205 LNSIYDQW-KLLAEHEKTITYMYSVDSSHAIVDLFNQNGVPSAHIDSKTPKVIRDKAMQD 263 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + + L N + G + P + + RPT+S+ Y Q R +R P K LILD Sbjct: 264 FRDGKLQMLSNYELYGEGVNIPDATTVIMARPTKSLVFYIQAGMRSMRYQPNKK-ALILD 322 Query: 356 YAGNPHDLYAPE---------VGTPKGKSDNVPVQV-FCPACGFANTFWGKTTADGTLIE 405 + GN + P+ GT K KS + V C C TF+ D Sbjct: 323 FVGNVNRFGLPDYDHDWEEYFKGTKKKKSGDFEAPVSTCDNC--FATFYSNEWVD----V 376 Query: 406 HFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE 450 H G ++DG ++K CP C + R + Sbjct: 377 HSGT-------NEDGKET------KYKTCPYCGEVTETVVERADK 408 >UniRef50_B5U5V9 Gp54 n=8 Tax=unclassified Siphoviridae RepID=B5U5V9_9CAUD Length = 598 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 168/369 (45%), Gaps = 26/369 (7%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAHVKE 60 LRPYQ+EAV+A +H+ + T +VLPTG GKS VI A R VL++AH E Sbjct: 39 ELRPYQREAVEAIESHWSQGVTRVGVVLPTGTGKSTVIGRTAVNGYQNREPVLMVAHRGE 98 Query: 61 LVAQNHAKYQALGLEADIFAAGLKR---KESHGKVVFGSVQSVA-RNLDAFQGEFSLLIV 116 L+ Q + G+ R + +V ++Q++A + G ++ Sbjct: 99 LIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAVGFRRRILW 158 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H G + T L G TAT R KG + GD Sbjct: 159 DEVHHAGAEGFHT---TFTELGGYT-DALFAGFTATMRRDDKG------KSPVGLGD--- 205 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + +YE + + I GYL P L + + + G F ++DL + + Sbjct: 206 VIEKVVYEKDILWAIDSGYLVRPRGLTVRIKNLNALDDVRTVAGDFQQSDLAEVM---EA 262 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 T +++ I AA R+ + IFAA+V+ A I L A D A +TG AER + E Sbjct: 263 ATEYVVDAIKLHAADRRPI-IFAASVDAAHHIADALTAADFPAVAVTGSMSYAERQPVYE 321 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 ++ + LV V VLT G D P D + + RPT S +LY Q++GR LRL GK D L+L Sbjct: 322 AYRNGTAKALVTVQVLTEGADFPMCDCVVLARPTRSRNLYSQMIGRALRLYDGKQDALVL 381 Query: 355 DYAGNPHDL 363 D AG+ + Sbjct: 382 DLAGSSRSM 390 >UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XHM4_VIBHA Length = 551 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 172/396 (43%), Gaps = 38/396 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQQ V+++L + H + V TG GK+++++ +AR + LVL H EL+ Q Sbjct: 3 LRNYQQRFVNSSLEALKNHH-GVLGVGATGCGKTVMLSSVAREFKS-ALVLQHRTELLEQ 60 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGD 124 N + + K + FG VQ++AR +D +G + L+++DE H Sbjct: 61 NSKTFSWVNPALKYGLVDSKNNDWSKPYTFGMVQTIARRMDEIKG-YDLIVIDEAHHTA- 118 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 +Q+ +I+ + NP +L G+TATP R K + +F + + Sbjct: 119 --ANQHAEIIEAVRNSNPDAKLFGVTATPERADKKDLSKF-------------YETISDQ 163 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + + +IK+G+L PP + V D +L+A + L + +I + Sbjct: 164 IKMNELIKNGFLVPPLGYVIKVA--DSEQLKAAKDDDEKI----EALLNLKATNERVIEE 217 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFR 302 + A R+ V IF T +HA ++ I G ER ++ + + Sbjct: 218 WRKIAGNRQTV-IFCQTRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDTGKLQ 276 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL-----APG--KTDCLILD 355 +VNV VLT GFD+ + + +LR + S S Q+VGRGLR P K DC++LD Sbjct: 277 VIVNVNVLTEGFDSQPISCVILLRGSSSKSSLIQMVGRGLRKLDPSRYPNVVKKDCVVLD 336 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQ---VFCPACG 388 + + E G + C CG Sbjct: 337 FGVSLMKHGNLEAGDRLDFDRFDDTDDAVIQCDQCG 372 >UniRef50_B7XGM0 Helicase n=3 Tax=Pseudomonas RepID=B7XGM0_PSEPU Length = 496 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 118/509 (23%), Positives = 196/509 (38%), Gaps = 66/509 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVK 59 LRPYQQ+ +++ PTG+GK+ V + A+ R + Sbjct: 1 MQLRPYQQQQDFELRKGISLGAIIQMLMSPTGSGKTEVAKHIIAGAQAKNRRAWFIVDSV 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS--LLIVD 117 +L+ Q ++ GL A + + + ++QS+ LD L+++D Sbjct: 61 KLLDQTLERFYKDGLVAGAIQSDHPCTDYRKPIQVATIQSLRPRLDYMLNHHKPHLVLID 120 Query: 118 ECH--RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 E H E + + + ++GL+ATP+R G G Sbjct: 121 EAHVIHEAHIELITWCR--------RNKVPVIGLSATPWRRGLGR--------------- 157 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 +F I + L + G+L P + V + + NG + E +L + Sbjct: 158 -IFDRLINCISLSELTDQGFLVPTQCYAPSVPS--LKGVSTKPNGDWIEDELA-TVMGDA 213 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 ++ +++ E RK M+FA V+H+K++ AA I G E + ++ Sbjct: 214 KLLGDVVTHWKELGENRK-TMVFACNVQHSKKLAAEFQKAGVAAAHIDGYMLPHETEEIL 272 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 +KA + R LV+VA+L GFD P + I RPT+S+ L+ Q++GRGLRL+P GK DC Sbjct: 273 RQYKAGKIRVLVSVAMLIKGFDDPSTSCLVIARPTKSLMLHYQMIGRGLRLSPETGKIDC 332 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 +I+D++GN P P + ++ + D E + C Sbjct: 333 IIIDHSGNLLLNGKPTDEVPDAMDNGEGERL------------DRRPQDKGDQEKKTKPC 380 Query: 412 QGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDT-VLVDPDDMLKAALRLKD 470 +C F F CP+C N+I T LV DD K Sbjct: 381 P-----------KCSFVFSGLLCPKCG--NEIVIPDGVAVATGKLVKLDDRRKVLGPTSK 427 Query: 471 ALVLRCSGMSLQHGHDEKGEWLKITYYDE 499 C + +K W + Y Sbjct: 428 QHTF-CELLGYARETGKKDGWAQYAYQAY 455 >UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY89_SYNWW Length = 773 Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 161/365 (44%), Gaps = 27/365 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 + LRP+Q+E ++ + + A+I G GK+ A L +AH EL Sbjct: 154 VLELRPHQEETLERLQELRGEYHSMALIADAQGTGKTTTAVLDACNMGLCTLFVAHTLEL 213 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECH 120 + Q +++ L A + V+ S+Q + L F + F +I+DE H Sbjct: 214 LQQAANRFKELWPRAQVKIIDNYAGPLDADVMIASIQGLHNRLTQFAPDHFGYIIIDEAH 273 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 + Y+++L++ LLGLTATP R + I + +F++ Sbjct: 274 HAA---ATTYRKVLSYFKPRF----LLGLTATPERHDQESIME-------------IFQN 313 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 + L L+ ++ G L P + + DFS+++ ++ DL+ + +R Sbjct: 314 EAHRLDLKTAVEIGELVPIRCVRVK-TNIDFSQVRIN-GIRYNYRDLDSCVHVPER-NRL 370 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKA 298 I+ + K V +F A+++HA E+ L A ++ G +R+ ++EN+ Sbjct: 371 IVETYLSHVPGEKAV-VFCASIQHAMEVAELFRDSGVKAEVVEGRMKKRDREAVLENYHQ 429 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + + L +L G+D+P ++ + RPT S +Y Q +GRG R APGK L+ D+ Sbjct: 430 DKVKVLCACDILNEGWDSPETAVLFMARPTLSRVIYLQQLGRGTRKAPGKEALLVFDFID 489 Query: 359 NPHDL 363 N Sbjct: 490 NTARH 494 >UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasmatales RepID=Q6F1F2_MESFL Length = 905 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 89/378 (23%), Positives = 157/378 (41%), Gaps = 39/378 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHV 58 L +Q+E +D +K ++++ TG GK+LV A + G ++L LAH Sbjct: 203 LYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSAFDYKRQSGQAKKDLKILFLAHQ 262 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGK--VVFGSVQSVARNLDAFQG-EFSLLI 115 +E+V Q Y+ + + K +F ++Q+++ L+ F+ +F +++ Sbjct: 263 REIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFATIQTLSTRLNKFKPNDFDIIV 322 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 DE H I + + ++ + ++LGLTATP R I + Sbjct: 323 YDEAHHIA---ANTFDKVFNYFKPQ----QILGLTATPEREDNKDIKAYFDD-------- 367 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + EL L I L P + + + + S+ D+ + + Sbjct: 368 ----EYATELRLWDAIDQKLLCPFDYYCIDDTNTNLQGVNLNSD-----KDIFKVVNTDS 418 Query: 236 RITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 R + I ++ R +IF TVEHA I L +++ A ++T +R Sbjct: 419 R-NELLFKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQNTK-DRKR 476 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++ F R YL V + G D P ++ I +LRPT S ++Y Q +GRGLR K Sbjct: 477 ILHEFSTGRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKL 536 Query: 352 LILDYAGNPHDLYAPEVG 369 + D N + Y +G Sbjct: 537 EVYDLISNIDNKYDITLG 554 >UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax=Bacteria RepID=A1SY30_PSYIN Length = 1149 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 162/382 (42%), Gaps = 41/382 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q EA+D + A+++ TG GK+ + A A+ L R+L + H + ++ Sbjct: 218 QVEALDNINVLRQSGARKALLISATGTGKTYLSAFDAQALKPKRLLFVVHRLTIALKSLE 277 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIG 123 +Q G + ++E +F +VQ++++ +LD F + F +I+DE HR G Sbjct: 278 TFQNVFGTGKTMGVYSGSKQELDKDFLFATVQTISKQNHLDQFNKDYFDYIIIDESHRSG 337 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 + Y++++ H LLG+TATP R I+ H + Y Sbjct: 338 ---ANSYKRLIEHFE----PTFLLGMTATPERTDGEDIFSLFDH------------NIAY 378 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L ++ G L+ + + D + ++ G F +II Sbjct: 379 EIRLNRAMEEGMLSNFHYYGVTDLIID--NVIQENMGDF-------AFLSSHERVDNIIK 429 Query: 244 QIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFK-- 297 + + ++F + E AK++ + ++G+ ER IE + Sbjct: 430 HACFYGSDNGITRGLVFCSRNEEAKKLAEMFNQSGFRSLALSGENSEDERARAIERLETD 489 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 A++ Y+ V + G D P V+ I ++RPT+S ++ Q +GRGLR GK ++D Sbjct: 490 NLAEKLDYIFTVDIFNEGIDIPKVNQIIMIRPTDSAIVFVQQLGRGLRKVDGKDYLTVID 549 Query: 356 YAGNPHDLYAPEVGTPKGKSDN 377 + GN ++ Y + S N Sbjct: 550 FIGNYNNNYLIPIALYGDTSYN 571 >UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax=Leptotrichia RepID=C7NAB7_LEPBD Length = 1090 Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 160/386 (41%), Gaps = 50/386 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----------------ARGR 51 Q+ ++ +++ TG GK+ + A + + + Sbjct: 302 QKRVLEKLKETRENGNKKGLVISATGTGKTYLAAMDIKQFFEINSNNKNKLFEINEKKSK 361 Query: 52 V-----LVLAHVKELVAQNHAKY-QALGLEADIFAAGLKR-KESHGKVVFGSVQSVARNL 104 + L +AH +EL+ + + L ++ + F KE + ++F S+QS+ Sbjct: 362 ISNIKFLFIAHREELLENAMNVFSRILKIDKNKFGRIYGGLKEINKSMIFASIQSLRNCY 421 Query: 105 DAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 + F+ F +IVDE H D Y + L++ LLGLTATP R+ I Sbjct: 422 NEFKHNFFDYIIVDEFHHSMSD---SYLKTLSYFQSKF----LLGLTATPKRMDGKDILS 474 Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFS 223 + + + E+ ++ ++ + P + ++ + + NG ++ Sbjct: 475 LCDY------------NVVDEIGIKEALEEDLIVPFHYFGVNDYTINYDNIPYK-NGKYN 521 Query: 224 EADLNRELKKQQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AAL 279 E L L R T +I+ +I F + F +EHA + + +A+ Sbjct: 522 EKILLENLLLNTR-TDYIVEKINRFGFDGNELSAVAFCQNIEHASFMKEEFTKKGYKSAV 580 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 IT + +R +++ FK ++ L V +L G D P ++L+ LRPT S +++ Q +G Sbjct: 581 ITANISSNDRAEILDKFKNKKIEILCVVDILNEGIDIPTINLLLFLRPTMSSTIFIQQIG 640 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYA 365 RGLR A K I+D+ GN Y Sbjct: 641 RGLRKAENKDFVTIIDFIGNHKKDYL 666 >UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B1XZH6_LEPCP Length = 1058 Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 161/382 (42%), Gaps = 34/382 (8%) Query: 2 IFTLRP--YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVL 53 F L+P YQQE ++ + + ++V TG GK++V A R R R+L Sbjct: 326 FFDLQPKTYQQEMLEQLITERSHGRNRNLLVAATGTGKTVVAAFDYRNTCRVEGGRPRLL 385 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSV-ARNLDAFQG-- 109 +AH +E++ Q Y+ + + + + +F ++ SV +R+L G Sbjct: 386 FVAHREEILRQALRTYREVLRDPEFGDLLTGGNQPERWDHLFATIDSVTSRDLVTTVGAD 445 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 + ++VDECHR+ D K LLGLTATP R I Q+ Sbjct: 446 HWHTVVVDECHRLAADR-------FDAFVKSVRPSVLLGLTATPERSDGQPIAQYFD--- 495 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 R D EL L + + L P E DFS + G +++ Sbjct: 496 ARPD-----GSPAIELRLWHALDLQLLAPFEYYACDD-GTDFSAVPWDKPGE--REAVDK 547 Query: 230 ELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 + ++++ A+ ++F +V HA+ + AA + G T Sbjct: 548 LVTGNDVRARLVVNEWRRLASDASTSRAIVFCVSVAHAEFMTDRFNRAGLPAACVVGTTA 607 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER + + LV V + G D P VD + +LRPT+S L+QQ +GRGLRLA Sbjct: 608 IEERRRAPQRLLSGELCALVTVDLYNEGIDLPMVDTLLLLRPTQSPVLFQQQIGRGLRLA 667 Query: 346 PGKTDCLILDYAGNPHDLYAPE 367 PGK CL+LD+ G + + Sbjct: 668 PGKESCLVLDFVGQHRTEFRFD 689 >UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID=Q82Z57_ENTFA Length = 964 Score = 278 bits (710), Expect = 6e-73, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 162/378 (42%), Gaps = 38/378 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q+EA+ + T +IV TG GK+ + A ++ + RVL + H + ++ + Sbjct: 226 QKEALRSLKALRETGATKGMIVSATGTGKTYLAAFDVQQFHPKRVLFIVHSELILMKALE 285 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNL--DAFQGE-FSLLIVDECHRI 122 ++ + G + D K K +FG++Q+V+++ + E F +++DE H+ Sbjct: 286 SFKLILGGKDDDYGVLSGNSKNFDAKYLFGTIQTVSKSEYQERLGKEAFDYILIDEVHKA 345 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G Y + + NP LLG+TATP R I++ + + Sbjct: 346 G---AKSYIKAIEFF---NPKF-LLGMTATPERTDNFNIFELFDY------------NVA 386 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + + D + + DL R L+K+ +I Sbjct: 387 YEIRLQAALEAELLCPFYYFGVTDYEKDGEIIDETT-------DLKRLLQKE--RVDFLI 437 Query: 243 SQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 +I + ++F + + A+++ + +A ++GD +R+ I+ Sbjct: 438 KKINYYGYSGDSPRGLVFCSRKDEARQLAEMFNDRGIPSAYLSGDHNFDKREKEIKRLDT 497 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y+ V + G D P V+ + +LR T+S ++ Q +GRGLR P K ++D+ G Sbjct: 498 GEIHYIFTVDIFNEGIDIPKVNQVIMLRNTQSSIIFIQQLGRGLRKDPSKEFVTVIDFIG 557 Query: 359 NPHDLYAPEVGTPKGKSD 376 N + Y + S Sbjct: 558 NYKNNYMIPMALSGDSSQ 575 >UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=C6BRN4_DESAD Length = 802 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 115/546 (21%), Positives = 189/546 (34%), Gaps = 91/546 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR------------------L 47 R YQ A++ L K ++ L TG GK+ + +L+ Sbjct: 156 RYYQHNAINQALEAIAAGKDRILLTLATGTGKTFIAFQLSWKLFHSRWNIKEWREGEEIT 215 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEA--DIFAAGLKRK---ESHGKVVFGSVQSVAR 102 R R+L LA L Q + + A +A I +++K +G + F Q+ Sbjct: 216 RRPRILFLADRNILADQAYNSFSAFPEDALVRISPDAIRKKGMVPKNGNIFFTIFQTFMS 275 Query: 103 NLDAF-----------QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 +DA F +I+DECHR G +ES ++ IL + LGLTA Sbjct: 276 GIDAEGNSAPNFGDYPPDFFDFIIIDECHRGGAKDESTWRGILEYFAPAVQ----LGLTA 331 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV---- 207 TP R Y + F D +Y L+ I G+LTP + + + Sbjct: 332 TPRRTNNADTYGY-------------FGDPVYTYSLKDGINDGFLTPFKVVQIATTLDEY 378 Query: 208 ----QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 + + + + + E + NR ++ + R H + M+ + ++F AT Sbjct: 379 VYTSDDEIIQGEVEEGKRYGENEFNRSIEIKAR-EEHRVKIFMDNIDQSQKTIVFGATQH 437 Query: 264 HAKEIVGLLPAE------DAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGF 314 HA + ++ + + + AE + + F+ L L+TG Sbjct: 438 HAGILRDIINQQKTCSDPNYCVRVVAQDLAEGEKWLRIFQDNEKTIPTILTTSQKLSTGV 497 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGK 374 DA +V I +LRP S+ ++QIVGRG RL GK I D+ PE + Sbjct: 498 DARNVRNIVLLRPVNSMIEFKQIVGRGTRLFDGKDYFTIYDFVKAYEHFNDPEWDGEPVE 557 Query: 375 SDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNC 434 + C CG C + C + + C Sbjct: 558 PE------PCSRCGNNPCTCEI---------KPPEPCSICGQ------LPCVCEKKVQPC 596 Query: 435 PQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKI 494 P+C E+ + + L D + MS + L Sbjct: 597 PKCG-EHPCVCEKKTKLKIKLADGKSRQIQHMMATTFWSTEGKPMSAAEFIKQMYGDLPE 655 Query: 495 TYYDED 500 + DED Sbjct: 656 LFKDED 661 >UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebacterium RepID=Q6M621_CORGL Length = 971 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 165/383 (43%), Gaps = 41/383 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+EA+DA L+ + + VI+ TG GK+++ A R+ + RVL + H ++++ + + Sbjct: 218 QEEALDALLSLTEKGEKRGVIISATGTGKTILAALATRMLKPERVLFVVHREQILDKARS 277 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRI 122 ++ + D KE VFG++Q++ + L +F L+IVDE HR Sbjct: 278 EFIKVLERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQISPTDFDLVIVDEVHRA 337 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + Y +L HL LLGLTATP R IY+ + Sbjct: 338 GAE---SYLALLNHLQPQF----LLGLTATPERTDGFNIYELFDFNVP------------ 378 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + D ++ L L ++R+ HI+ Sbjct: 379 YEIRLQAALESNMLVPFHYYGVTDFTLDSETTVTDTSKL-------SALVSEERVH-HIL 430 Query: 243 SQIMEF-AATRKGVMIFAATVEHAKEIVGLLPAE-------DAALITGDTPGAERDVLIE 294 + + +IF + E A+E+ LL ++ R+ ++ Sbjct: 431 EALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKDSIPYREEVVA 490 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 ++ Y++ V + G D P V+ I ++R T+S ++ Q +GRGLR A GK ++ Sbjct: 491 ELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRKAAGKDHLRVI 550 Query: 355 DYAGNPHDLYAPEVGTPKGKSDN 377 D+ GN + Y + S N Sbjct: 551 DFIGNYANNYLIPIALFGDNSRN 573 >UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepID=A5UL17_METS3 Length = 956 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 77/382 (20%), Positives = 157/382 (41%), Gaps = 41/382 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q +++ + + ++ A++V TG GK+ + + L + H +++ Q Sbjct: 220 QVGFMESLRSLIQSGESKALLVSATGTGKTYASAFAVQDFNPKKFLFVVHREQIAKQAIN 279 Query: 68 KYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIG 123 Y+ + D K+ +F ++Q+++++ + EF +++DE H+ G Sbjct: 280 AYKNVFKNTKDFGLLTGNSKDYDSNFLFSTIQTLSKDDVYTKFKKDEFDYIVIDEVHKAG 339 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ+I+ + LG+TA+P R IY+ H + Sbjct: 340 ---AYSYQKIMDYFEPEF----CLGMTASPERPDGIDIYELFDHNLA------------C 380 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQ--AQSNGLFSEADLNRELKKQQRITPHI 241 E+ L+ ++ L P + ++ D + + N L S+ +N L+K Sbjct: 381 EIRLKDALEEDLLCPFHYFGISDLEIDGETVDDSTEFNQLVSDDRVNYLLEK-------- 432 Query: 242 ISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA- 298 S ++ R ++F + + A E+ A ++TGD R+ I Sbjct: 433 -SAYYGYSGERIKALVFCSRKKEANELSKAFNKRGHPAIVLTGDDSQQTREDAIYRLTND 491 Query: 299 ---QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 + Y+ V + G D P ++ + ++RPT+S ++ Q +GRGLR K +ILD Sbjct: 492 EAKNKLEYIFTVDIFNEGVDIPEINQVLLVRPTQSPIIFIQQLGRGLRKFKNKDYVVILD 551 Query: 356 YAGNPHDLYAPEVGTPKGKSDN 377 + GN + + + +S + Sbjct: 552 FIGNYKNNFMIPIALSGDRSYD 573 >UniRef50_A5PJ16 HelA n=4 Tax=Siphoviridae RepID=A5PJ16_9CAUD Length = 657 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 129/547 (23%), Positives = 222/547 (40%), Gaps = 105/547 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAHVK 59 YQ A ++ P + AGK+++ A +A R + L LA Sbjct: 29 IVPYEYQCVAYAEIAKRLSKYVDPFFVKAAVSAGKTIIFAMVAAQCRKMGLKALFLARQS 88 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEF--SLLIVD 117 E+V Q+ + A G+ ++ AGL K ++ +V GS +V L+ G++ +L +D Sbjct: 89 EIVDQDSKEISAFGVPNSVYCAGLNTKSAYFPIVVGSEGTVIGGLNKALGDYVPQVLGID 148 Query: 118 ECHRIGDDE--------------------------------ESQYQQILTH-----LTKV 140 ECH++ ++ +QY I+ L Sbjct: 149 ECHQVNWNDIVEAEENGESIEQMMTPKGEPVEGNPLLIGSGRAQYTIIIAEMRRRCLETY 208 Query: 141 NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE 200 LR+ G+T + +R + + + +R+ I + Y++K G + P Sbjct: 209 GHQLRIFGMTGSEYRGIEPILVEDKR-------IPGFWREQITNIDTDYLVKFGSVVPTY 261 Query: 201 RLDMPVVQYDFSRLQAQSN---GLFSEADL---NRELKKQQRITPHIISQIMEFAATRKG 254 ++ + YD S + + L + ++ + +T I+ + E R Sbjct: 262 FGNVGDLGYDLSEFTPVHEFGVADYDQKQLKAMSDKIHQSGTMTQKIMQMVHEVMKNRLC 321 Query: 255 VMIFAATVEHAKEIVGLLP-AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTG 313 ++ A H KE LP +ITG T +R + +++ R +Y+ V LTTG Sbjct: 322 ALVTCADERHCKEAAAALPSGTKYHIITGKTGEKQRRLWLDDAYEGRVKYIFQVQALTTG 381 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLR---------LAPGKTDCLILDYAGNPHDL- 363 + P D ILR S++L Q++GRG+R L KTD L+LD++G ++ Sbjct: 382 VNVPPWDTSVILRKIGSLTLLTQLLGRGMRQLKTYHKEVLGMHKTDHLVLDFSGTMFEMG 441 Query: 364 ---YAPEVGTP----KGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 + P + + D P FCP CG N+F + RRC E Sbjct: 442 NLYFDPMLEQAQFQLRKSQDKDP--KFCPICGTENSF-------------YARRCIN--E 484 Query: 417 DDDGHREQCDFRFRFKNCPQ-------------CNAENDIAARRCRECDTVLVDPDDMLK 463 D++G+ +C+ + F+ C C A+ND+AAR CR C+ L DP+D L Sbjct: 485 DENGN--RCEHFWTFQECEDQIDERTKKVIVKGCGAKNDVAARVCRCCNVQLRDPNDNLS 542 Query: 464 AALRLKD 470 + K+ Sbjct: 543 GKMYRKN 549 >UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I028_9BACT Length = 1039 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 159/378 (42%), Gaps = 33/378 (8%) Query: 3 FTLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELAR-----LARGRVLVLA 56 + P+Q+E ++ +T ++V TG GK+++ A R + R R+L +A Sbjct: 300 LSPYPFQEEILEKLAVEREVHGRTKNLVVAATGTGKTVIAALDFRRLREKMPRARLLFVA 359 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVARN--LDAFQGEFSL 113 H +E++ Q+ ++ + + L G + +F SVQ +A LD+ ++ Sbjct: 360 HRREILEQSLLTFRRALGDPNFGRILLPDGPPGGSEHLFVSVQLLASRSLLDSLSPDYFD 419 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 ++V + E Y+++L+ L+ LLGLTATP R I + Sbjct: 420 VVV--VDEVHHGEAPTYRRLLSRLS----PRILLGLTATPERSDGLDIRSWFD------- 466 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 E+ L I G L P + D+ ++ + G ++ +DL+ + Sbjct: 467 -----GRIAAEIRLPEAIGRGLLVPFHYFGVSD-SVDYRSVRWE-RGRYNLSDLDNVITG 519 Query: 234 QQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 I+ + + + + F +V HA + + + + TP R Sbjct: 520 DDLRAGIILKAVSNYLSDPRKARGLGFCVSVNHAIRMAEIFNRAGLPSEALHAGTPSDRR 579 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + + +L V + G D P VD + LRPTES++++ Q +GRGLRL PGK Sbjct: 580 ERVRSRLSNGELSFLFTVDLFNEGVDIPEVDTVLFLRPTESLTVFLQQLGRGLRLFPGKE 639 Query: 350 DCLILDYAGNPHDLYAPE 367 +LD+ G ++ E Sbjct: 640 VLTVLDFIGQSRAEFSFE 657 >UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=C0XQJ4_9CORY Length = 943 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 170/388 (43%), Gaps = 41/388 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHA 67 Q EA++ + A+I+ TG GK+++ A R + R VL +AH ++++ + Sbjct: 182 QTEALENLQRVIDAGERRAIIISATGTGKTILSALAVRQIKPRRVLFVAHREQILNKAAE 241 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRI 122 ++Q + DI +RKE++ ++VF ++QS+ R L +F L+IVDE HR Sbjct: 242 EFQRVLACPPTDIGFIVGQRKEANQRLVFATIQSLGRGDTLSEISPKQFDLVIVDEVHRS 301 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ++L H LGLTATP R +++ + + Sbjct: 302 GAE---SYQKVLNHFRADF----TLGLTATPERTDGFNVFELFDYNVP------------ 342 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L +++ L P + + + F + S+ ++L +R+ H+ Sbjct: 343 YEIRLEDALENHMLVPFDYYGVSDYESAFGSV-------ISDNSTLQQLAAPERVH-HLA 394 Query: 243 SQIMEFA-ATRKGVMIFAATVEHAKEIVGLLPAED-------AALITGDTPGAERDVLIE 294 I +++ A +IF ++ A + L E ++G R+ +E Sbjct: 395 KIIQDYSFARGSKGLIFCSSNAEAAALSKGLNTESVHGRPLRTIALSGGDSIETRENTVE 454 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 Y++ V + G D P V+++ +LR T+S ++ Q +GRGLR GK ++ Sbjct: 455 KLAQGEIDYILTVDIFNEGIDIPPVNVVVMLRSTQSSIVFTQQLGRGLRKYAGKRSLRVI 514 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 D GN + V +S + V Sbjct: 515 DVIGNYATNFLVAVALTGDRSGSKDVIK 542 >UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NH67_ACHLI Length = 986 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 158/379 (41%), Gaps = 34/379 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A++ N A+I+ TG GK+ + ++ +L +VL + H +++ Sbjct: 240 QEMALEGLNNIRNSGGNKALIIAATGTGKTYLSAFDVFQLRPKKVLFVVHRGKILRDALR 299 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRIGD 124 ++ + E + +K+ +F SVQ++++ NL+ F F +I+DE HR Sbjct: 300 TFKTIMPEVSMGEFVGSKKDLESDYLFASVQTISKIDNLNLFDPSYFDYIIIDEAHRSAA 359 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 D YQ+I ++ T LLG+TATP R IY+ + + E Sbjct: 360 D---SYQRITSYFTPKF----LLGMTATPERTDSRNIYELYDN------------QIAVE 400 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + LR ++ + P + D + + L +L + R+ II Sbjct: 401 IRLRQALEKELVVPFHYFGIEDATTDIQNINLNTEID----KLAEKLNIKARV-ELIIEN 455 Query: 245 IMEF--AATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFK--A 298 I ++ + + + + + HA+ + I TG T +R+ I + Sbjct: 456 IKKYKHSGDKTKALGYCVNIAHAEYMANAFNERGLVSIALTGGTAELDREDTIRRLEDPN 515 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y+ V + G D P V+LI +LRPT S ++ Q +GRGLR K +LD+ Sbjct: 516 DPLSYIFTVEIFNEGIDIPSVNLILMLRPTNSSIIFTQQLGRGLRKYKDKEYLTVLDFIA 575 Query: 359 NPHDLYAPEVGTPKGKSDN 377 N + + + K+ + Sbjct: 576 NHNKNFLLPIALIGDKAYD 594 >UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobacteria RepID=A5F3B5_VIBC3 Length = 979 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 87/362 (24%), Positives = 152/362 (41%), Gaps = 30/362 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-RVLVLAHVKELVAQNHA 67 Q EA+ A + + ++VL TG GK+ + A A + +VL +AH +E++ Q Sbjct: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEK 281 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGD 124 + L A + + ++F SV ++ + +L F + F ++VDE H Sbjct: 282 TFCQLIPNAKTGLYNGVTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAA- 340 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y+ +LT+ LLGLTATP R + I + ++E Sbjct: 341 --ARSYRNLLTYFKPKF----LLGLTATPERSDQADILSLCDSNL------------VFE 382 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L + I L P + + ++ + + NG F L+ L Q R H+ Sbjct: 383 RNLVHGIDEKILVPFDYHGIYDQAVNYQEIPWR-NGKFDPDSLDNALATQ-RRAEHVYQH 440 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI-TGDTPGAERDVLIENFKAQRFRY 303 + TR + F + +HA + ++ I R+ ++ + + Sbjct: 441 WHQKKQTR--TLAFCVSKKHADFMAEFCLSKGIKAIAVYSDSKVRRNQALQWLDSGKIDI 498 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPH 361 L +V + G D P +D I +LRPTES L+ Q +GRGLR + K+ +++D+ GN Sbjct: 499 LFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGNHD 558 Query: 362 DL 363 Sbjct: 559 SF 560 >UniRef50_Q597S9 Putative helicase n=1 Tax=Lactobacillus phage phiJL-1 RepID=Q597S9_9CAUD Length = 467 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 111/456 (24%), Positives = 184/456 (40%), Gaps = 89/456 (19%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAHV 58 +F L YQQ VD T N R+ +IV P G+GKS++I E+ RL + RVL H Sbjct: 1 MFKLYDYQQRIVDETRNKLRQGNKGVLIVSPPGSGKSVIIGEITRLTTLKKNRVLFTVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 +ELV Q + A+G+ D +V V LD + + L+IVDE Sbjct: 61 QELVDQITDTFDAMGVNQDY-------------TTVMTVGRVKNRLDKLE-KPDLIIVDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 Y IL + + + LG + +P+R+ G + Y MV G Sbjct: 107 SQHT---RAKTYTDILDYYS----DVPRLGFSGSPWRM-NGQGFDDIYPAMVEGP----- 153 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 ++++I + +L P ++ + NG + + ++ L +I Sbjct: 154 -------SVKWLIDNYHLAPFTYYAPQTLE-----GFKKRNGEYDKKSVDEVLGS--KIF 199 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLIENF 296 +S + A ++ + ++A +VE+AK+ +AA + G TP AERD +I +F Sbjct: 200 GDAVSSYLSNANGKQAI-LYAHSVEYAKKYAVAFEEAGVNAASVDGKTPKAERDRIINDF 258 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 ++ + + L N +++ GFD P+ +++ + RPT S+ LY Q R +R GK +I+D+ Sbjct: 259 RSGKLKVLCNNDLISEGFDVPNCEVVIMCRPTASLVLYLQQSMRCMRYVNGKQ-AMIIDH 317 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN P+ D GR G + Sbjct: 318 VGNYVRFGLPD--------------------------------DDRQWSLSGRNSNGKVD 345 Query: 417 DDDGHREQCDFRFRF-------KNCPQCNAENDIAA 445 D H C ++ CP C A Sbjct: 346 APDIH--TCQHCYQVFYEWTADNRCPYCGELKPEAD 379 >UniRef50_C1I4L0 Superfamily II DNA/RNA helicase n=6 Tax=Clostridiales RepID=C1I4L0_9CLOT Length = 1055 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 163/383 (42%), Gaps = 39/383 (10%) Query: 3 FTLRPY--QQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELARL-------ARGRV 52 F +RPY Q+E +D +K +++ TG GK+++ A + R+ Sbjct: 319 FDIRPYAYQKEILDKLRVEREIFNKNKNLVIAATGVGKTVISAFDYKNFCKENKKQPNRL 378 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSV-ARNLDAF--Q 108 L + H +E++ Q ++A+ + + + + +F S+QS+ +++L + Sbjct: 379 LFVVHREEILKQARDTFRAILKDNNFGDLMVGGNVPESLEHLFVSIQSLNSKDLCEITTE 438 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 + +IVDE H YQ++L++ LLGLTATP R I+++ Sbjct: 439 DYYDFIIVDEFHHAA---APSYQRLLSYYKPK----VLLGLTATPERADNKDIFKYFED- 490 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 E+ L I L+P + + D ++++ Q G ++ ++L+ Sbjct: 491 -----------RISGEIRLPEAIDRKLLSPFQYFAVSD-SVDLTQIKWQRKG-YNLSELS 537 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAEDAALI--TGDT 284 I++ + ++ V+ F + EHAK + A I T ++ Sbjct: 538 NVYTGNDIRVNEIVTALKKYVTDIDDVIGLGFCVSKEHAKFMSKRFNELGIASIALTDES 597 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ER + +++ + G D P V+ I LRPTES++++ Q +GRGLRL Sbjct: 598 RKEERSEAKSKLVNKEIKFIFVADLYNEGVDIPEVNTILFLRPTESLTVFLQQLGRGLRL 657 Query: 345 APGKTDCLILDYAGNPHDLYAPE 367 K +LD+ G H Y E Sbjct: 658 HENKECLTVLDFVGQAHKNYDFE 680 >UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14JJ7_FRAT1 Length = 913 Score = 275 bits (703), Expect = 4e-72, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 155/380 (40%), Gaps = 38/380 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+++ K A+I+ TG GK+ + ++A + R L + H + + Sbjct: 193 QCEALESLRQLRDSGKNKALIISATGTGKTFLSAFDIASIKPKRCLFVVHRTNIAIKAQE 252 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQG-EFSLLIVDECHRIGD 124 + + + + K S + +F +VQ++ ++ L F+ EF +I+DE H Sbjct: 253 TFAKVISDKTLGLYTGGNKTS-AEYLFATVQTLKNSKVLANFKSQEFEYIIIDEVHHA-- 309 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 E Y+++L H T LLG+TATP R I++ + + YE Sbjct: 310 -EAESYKKVLAHFTPKF----LLGMTATPERSDAADIFKLFDY------------NIAYE 352 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + L ++ L P + + + + A+ N HII + Sbjct: 353 IRLHQALEQDLLCPFHYFAVEDLYLESEEILAK----------NFAKLVSDVRVEHIIEK 402 Query: 245 I--MEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQR 300 I ++ + ++F + V+ AKE+ + A ++ R I ++ Sbjct: 403 INFYGYSGQSRAALMFVSNVDEAKELATKFSNKGIKAKALSSQDSEQIRQTTIAQLESGE 462 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 +V V + G D P ++ I +LRPT+S +Y Q +GRGLR K +ILD+ N Sbjct: 463 LEIIVTVDIFNEGVDIPCINQIILLRPTQSAIVYIQQLGRGLRKYQDKKFVVILDFIANY 522 Query: 361 HDLYAPEVGTPKGKSDNVPV 380 + + V S + Sbjct: 523 TNNFLIAVALSGDNSYDKDE 542 >UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax=Veillonella parvula RepID=D1BPC6_VEIPT Length = 967 Score = 274 bits (700), Expect = 7e-72, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 157/389 (40%), Gaps = 46/389 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 QQ+ + + +++ TG GK+ A R R R+L L H +++ Q A Sbjct: 213 QQQFIANFNELRANNAKRGLLISGTGTGKTYAAAFAMREMRPKRILFLVHREQIAKQAIA 272 Query: 68 KYQALGLEADIFAA--GLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRI 122 ++ + + I K + VF ++Q + RN + + EF +I+DE HR Sbjct: 273 SFERIYNDPSITFGLVSGNAKYYNATHVFSTMQMMGRNDVMKQYAPKEFDCIIIDEVHRA 332 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G D YQ+I+ + LLG+TA+P R +Y+ H + I Sbjct: 333 GSD---SYQRIIEYFEPQF----LLGMTASPERTDGYDLYELFDH------------NII 373 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + + D + S+ +++ + II Sbjct: 374 YEIRLQQALEEDLLCPFHYFGISDLWVD-------TQEDISDMEVSFSNLSTKERVDKII 426 Query: 243 SQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGAERDVLIENF- 296 +I F +R ++F + AK + D +TG+ R++ I Sbjct: 427 EKIRYFGHSGSRVKGLVFCSNRVEAKALSDAFNERDVYRTVCLTGEDSQETREIAIARLT 486 Query: 297 --------KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 + Y+ V + G D P ++ + +LR TES ++ Q +GRGLR K Sbjct: 487 GTGDYQGRSDLQLDYIFTVDIFNEGVDIPEINQVIMLRQTESPIIFIQQLGRGLRKFEDK 546 Query: 349 TDCLILDYAGNPHDLYAPEVGTPKGKSDN 377 +ILD+ GN + + + +S N Sbjct: 547 EYVVILDFIGNYTNNFMIPLALSGDRSYN 575 >UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Tax=Bacteria RepID=B0TQK0_SHEHH Length = 1072 Score = 274 bits (700), Expect = 8e-72, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 155/377 (41%), Gaps = 36/377 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAE-----LARLARGRVLVLA 56 +Q+ +D H ++V TG GK+++ A A + L LA Sbjct: 325 IKPHSHQRAILDKLKVERELHSRYRNLVVAATGTGKTIISAFDFAEFYAANPEAKFLFLA 384 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVARNLDAF---QGEFS 112 H +E++ Q + Y+ + + K +F S+QS+ L + F Sbjct: 385 HREEILKQARSAYRGVLKSNQFGELLVGQNKPQKFNQLFASIQSLNNQLATIQLTEDYFD 444 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +++DE H I S Y+ +L H L+GLTATP R I + + + Sbjct: 445 YIVIDEVHHIA---ASSYRPVLQHFKPQI----LVGLTATPERHDGADILKDFCNVIAA- 496 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 E+ L I +L+P + + D +++ + G + A+L + Sbjct: 497 -----------EIRLPEAINQRHLSPFQYFAVDD-DTDLTKISW-AKGRYDIAELTKLYT 543 Query: 233 KQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 + I+ + E + + F + +HA I ++ ++T D E Sbjct: 544 YNDQRVLRILQSLEEIVTDISQMRALAFCVSKDHANFIAQKFNLKNIPCGVLTSDNSK-E 602 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R++L + K++ L V + G D P +D + LRPTES++++ Q +GRGLRL K Sbjct: 603 REILQQRLKSKEINVLFVVDIFNEGVDIPELDTLLFLRPTESLTVFLQQLGRGLRLTKDK 662 Query: 349 TDCLILDYAGNPHDLYA 365 C ++D+ GN Y Sbjct: 663 ECCTVIDFVGNSRPEYD 679 >UniRef50_A3IZE6 DEAD/DEAH box helicase-like protein n=2 Tax=Cyanothece RepID=A3IZE6_9CHRO Length = 522 Score = 274 bits (700), Expect = 9e-72, Method: Composition-based stats. Identities = 105/409 (25%), Positives = 169/409 (41%), Gaps = 44/409 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 F LRPYQ + V++ + + ++V TGAGK+++ + L + L +VL L H Sbjct: 14 FKLRPYQAQVVESVHQQLKTDQRQRVLVVAGTGAGKTVIASHLTQDFLLQNKKVLFLVHR 73 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---FSLLI 115 LV Q +K+ L I AG + + SVQ++ R + F + I Sbjct: 74 DILVKQTVSKFTHL--PHGII-AGRHQLNLSQPLQVASVQTLGRKGVEWLNHHFPFDIAI 130 Query: 116 VDECHRIGDDEESQYQQILTHLT-KVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 DE H S ++ L + H +GLTATP+R K Y V Sbjct: 131 FDESHLTNWFNFS--LELFPRLPLSQDDHTICIGLTATPWRRSKYQAMGDLYQSSVFAPL 188 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 +I G+L P + V+ R++ NG + L Sbjct: 189 PG------------ELISQGFLVPFAYFSIGKVEKKGLRIR---NGEYETVKLKVRCNTP 233 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 + I HI+++ ++ A R + IF+ +EHA+ I + AA + G +R+ + Sbjct: 234 EVI-QHIVNEWLDKAKNRPTI-IFSIDIEHAQAIAQAFNNQGISAASVDGTMKIGDREKI 291 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG--KTD 350 E ++ + + + L+ GFD P V + + R T S + Y Q +GRG R+ P K D Sbjct: 292 YEQLAQRKIQVVCSCEALSEGFDVPIVSCVVLARLTTSKAKYIQQIGRGARITPDGEKRD 351 Query: 351 CLILDYAGNPHDLY--------APEVGTPKGKSDNV--PVQVFCPACGF 389 CL+LD G + E+ T + K D+ P CP C Sbjct: 352 CLVLDAVGLVEEFGFFEDISYEDLELRTSENKPDHKTPPPMKNCPKCQQ 400 >UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax=Anaeromyxobacter dehalogenans RepID=B8J8P5_ANAD2 Length = 1033 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 157/383 (40%), Gaps = 37/383 (9%) Query: 1 MIFTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIA-----ELARLARGRV 52 F LRPY Q+ ++ H ++V TG GK+++ A ++ R R+ Sbjct: 308 FFFDLRPYEYQRAILEKLRVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQVKDGVRPRL 367 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVAR-NLDAFQGE 110 L +AH +E++ Q ++ + + + + +F ++QS+ R +L A G Sbjct: 368 LFVAHREEILEQALHAFRNVLRDHSFGELLKGGSTPASYEHLFATIQSLDRKDLPAALGR 427 Query: 111 --FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 + +IVDE H Y +L V P + LLGLTATP R + + H Sbjct: 428 DYWHTVIVDEFHHAA---AKTYGLLLE---AVAPKI-LLGLTATPERADGLDVLGWFDH- 479 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 ++ L + ++ L P E + ++ + G + L+ Sbjct: 480 -----------HVAADIRLWHALEKQLLAPFEYYGVAD-GVSLEGVEWRRGG-YDLGGLD 526 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAEDAA--LITGDT 284 + ++S++ E + F +V HA+ + +I G T Sbjct: 527 KVYTGNDERARLVVSKLRELHGHPETARGLGFCVSVAHAEFMARRFTEAGIPSLVIHGAT 586 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ERD + +L + G D P VD + +LRPTES +L+ Q +GRGLRL Sbjct: 587 DADERDEAPRKLERGEVAFLFTCDLYNEGVDLPFVDTLLLLRPTESATLFLQQLGRGLRL 646 Query: 345 APGKTDCLILDYAGNPHDLYAPE 367 PGKT L+LD+ G Y + Sbjct: 647 HPGKTQALVLDFIGQQRAEYRFD 669 >UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae RepID=A4WYD6_RHOS5 Length = 956 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 164/403 (40%), Gaps = 44/403 (10%) Query: 23 HKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG 82 ++VL TG GK+ + A +R +VL +AH +E++ Q + ++ + EA Sbjct: 276 GHRAGLVVLATGLGKTWLAAFDSR-PFAQVLFVAHREEILTQAMSSFRRIRPEARFGRYD 334 Query: 83 LKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTK 139 K+ +++F S+Q++ R +L F + F ++VDE H Y+ +L H T Sbjct: 335 GTEKDDGAEILFASIQTLGRSNHLRRFAPDSFDYIVVDEFHHAS---AGSYRGLLDHFTP 391 Query: 140 VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPP 199 LLGLTATP R + + +Y L I+ G L+P Sbjct: 392 RF----LLGLTATPDRSDGADLLALCGDNL------------VYHCDLFEGIEAGLLSPF 435 Query: 200 ERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMI-F 258 L +P + D++++ +SN F L L + R + + +F R G I F Sbjct: 436 RYLGVPD-EVDYAQIPWRSNQ-FDPEALEAALATEARAR----NALDQFHRHRDGPAIGF 489 Query: 259 AATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDA 316 ++ HA+ + A+ A + A R ++ L V + G D Sbjct: 490 CCSLRHAEFMAAFFQAQGLRAVAVHSGPGSAPRATSLDRLGRGEIDILFAVDMFNEGVDV 549 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH----DLYAPEVGTPK 372 P++ + +LRPTESV L+ Q +GRGLR GK ++DY GN L A P Sbjct: 550 PNIGTVMMLRPTESVILWLQQLGRGLRRVEGKL-LRVIDYIGNHRVFLTKLRALLAAGPG 608 Query: 373 GKSDNVPVQVFC-------PACGFANTFWGKTTADGTLIEHFG 408 +S ++ PAC L G Sbjct: 609 DRSLAQRLEQAAAGTLALPPACSVTYDLRVIEILRDLLRPKSG 651 >UniRef50_A5A3T1 BcepGomrgp42 n=1 Tax=Burkholderia phage BcepGomr RepID=A5A3T1_9CAUD Length = 600 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 253/633 (39%), Gaps = 96/633 (15%) Query: 2 IFTLRPYQQEAVDATLNHFRRH--KTPAVIVLPTGAGKSLVIA-ELARL----ARGRVLV 54 + R YQ VD + H R KT A+++ PTG GKS+VIA +ARL + R ++ Sbjct: 1 MIIPRDYQGYGVDKIIEHIYRSGPKTNALLLYPTGTGKSVVIALAVARLFGDFSGTRAMM 60 Query: 55 LAHVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS 112 L H KELV QN+ K + EA I+A GLKRKE + FGS+QSV + F Sbjct: 61 LTHSKELVGQNYKKLKEAWNEAPVGIYADGLKRKEYYYPCTFGSIQSVYNKPELFAP-LH 119 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVN-----PHLRLLGLTATPFRLGKGWIYQFHYH 167 ++ +DE H + D++ESQY+ + +T++N P + GLTAT +R+ +G + Q Sbjct: 120 VMFIDEAHMVSDNDESQYRSFINGVTEINAKHGLPPPVVYGLTATGYRMKQGMLTQGENP 179 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 + + DC + GYL PP V+ D S+++ + G ++E D Sbjct: 180 LF-----EEILVDCTSMEAFNWFFSEGYLVPPIPRPSKNVKVDLSKIRITA-GEYNEKD- 232 Query: 228 NRELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLL--PAEDAALITGD 283 +E Q I II + + FAA R +IF++ VEHA+ + L E A + Sbjct: 233 QQEAFDQDPINRAIIDEALAFAASENRHKGIIFSSGVEHARHLCEELIRRGESATWVASK 292 Query: 284 -TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 ERD I + A F+++VN +LTTGFD P +D++ I R T SV L+ QI+GRG Sbjct: 293 GMSDTERDKRIAAYLAGEFKWMVNNGILTTGFDCPEIDIMVIARCTRSVGLWVQILGRGT 352 Query: 343 RLAPG---------------------KTDCLILDYAGNPHDLYAP-EVGTPKGKSDNVPV 380 R K +CL+LD+ N L +V PK + Sbjct: 353 RPFWDTVGEWDLSTREGRLGSIAASPKQNCLVLDFGNNAGRLGCINDVRVPKPREKASAG 412 Query: 381 QVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAE 440 C + DG + C Sbjct: 413 DAPVRICEDQYEI-----------------------NIDGKPVKNSDGSYKVKVQGCGVY 449 Query: 441 NDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGM-SLQHGHDEKGEWLKITYYDE 499 N +A RC C P LV GM + + K + + Y+ Sbjct: 450 NHASATRCWNCGVEF--PRSSHIEMTSSTAKLVKADKGMLEPEETQEFKIDRIVYLYHTP 507 Query: 500 -DGADVSERFRLQTPAQRTAFEQLF----------------IRPHTRTPGIPLRWITAAD 542 G S + Q F +R +R P + Sbjct: 508 RHGGASSLKVMYHCGRQVFTTWIAFEADHQYPRYLAGEWWRLRHSSRVPKTTIEAHQ--- 564 Query: 543 ILAQQALLRHPDFVVARMKGQYWQVREKVFDYE 575 +A + LR P ++A ++ VFD E Sbjct: 565 -IALRGELREPRSLIAVTNKPSKDIKNYVFDVE 596 >UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LA91_9DELT Length = 798 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 123/549 (22%), Positives = 199/549 (36%), Gaps = 106/549 (19%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----------------- 48 R YQ A++ L + ++ L TG GK+ + +LA Sbjct: 160 RYYQHNAINQALEAIAAGRDRILLTLATGTGKTFIAFQLAWKLFQSRWNLKDWKGGGEPS 219 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEA--DIFAAGLKRK---ESHGKVVFGSVQSVAR 102 R R+L LA L +Q + + A +A I +++K +G + F Q+ Sbjct: 220 RRPRILFLADRNILASQAYNAFSAFPEDALVRISPDAIRKKGMVPKNGSIFFTIFQTFMA 279 Query: 103 NLDAFQGE-----------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 DA F +++DECHR G ++ES +++ILT+ + LGLTA Sbjct: 280 GRDAAGNPAPNFGDYPPDFFDFIVIDECHRGGANDESNWREILTYFSPAVQ----LGLTA 335 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER------LDMP 205 TP R G D A F D +Y L+ I GYLTP + LD Sbjct: 336 TPKRKGN-------------VDTYAYFGDPVYVYSLKEGINDGYLTPFKVRQIATTLDEY 382 Query: 206 VVQYDFSRLQ--AQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 V D + ++ + ++E+D NR ++ +R + + M+ + ++F AT + Sbjct: 383 VYTADDNVIEGDIEEGRRYTESDFNRVIEIAER-ERYRVKLFMDMIDQTQKTLVFCATQD 441 Query: 264 HAKEIVGLLPAE------DAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGF 314 HA + + D + G+E + + F+ L L+TG Sbjct: 442 HALAVRDCINQTKQNSDPDYCIRVTANDGSEGERWLRVFQDNDKTIPTILTTSQKLSTGV 501 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPK-- 372 DA +V I ++RP S+ ++QIVGRG RL GK I D+ PE Sbjct: 502 DARNVRNIVLMRPINSIIEFKQIVGRGTRLFEGKDYFTIYDFVKAYERFDDPEWDGDPIE 561 Query: 373 -GKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRF 431 V CP CG + C+ Sbjct: 562 PEPRPPVKPPKECPVCG---------------------------------KLPCECVREP 588 Query: 432 KNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEW 491 + CP+C I +R + L D + + + +S + Sbjct: 589 EPCPECGRIPCICGKR-VKTKIKLADGKERMIQHMTATTFWSPDGKPLSAAQFIESLYGQ 647 Query: 492 LKITYYDED 500 L + DED Sbjct: 648 LPELFKDED 656 >UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=Bifidobacterium RepID=D2Q5U4_9BIFI Length = 1050 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 173/395 (43%), Gaps = 47/395 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+ ++ ++ A+I+ TG GK+ + ++ + R+L +A ++++ + Sbjct: 243 QVEALMNLAQLRKQGESRAIIISATGTGKTYLSAFDVRQFKPKRMLYIAQQEQILKKAKE 302 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRI 122 YQ + ++ KE K +F +VQ+++R L F + +F +++DE H Sbjct: 303 SYQKVLGCPAKELGLFSGISKEHDRKYLFATVQTMSRPEVLVQFGKDDFDYILIDEVHHA 362 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 D Y++I+ + T P +LG+TATP R I++ + + Sbjct: 363 AAD---SYKRIIDYFT---PDF-MLGMTATPERTDGANIFELFGN------------NVA 403 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA----QSNGLFSEADLN------RELK 232 YE+ L+ ++ L P + + + ++E + N EL Sbjct: 404 YEIRLQRALEESMLCPFHYYGVHEYIQEAPNGRLLGKQIKASDWTEQERNDLSHWLEELT 463 Query: 233 KQQRITPHIISQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAE---------DAALIT 281 R+ +II +I + A T ++F + E AK + L + IT Sbjct: 464 SPSRVH-YIIDKIQLYGEAGTDVQGLVFCSRREEAKRLSALFNQQINQQAERPYHTKAIT 522 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G+ AERD+ +E + Y+ V + G D PH++ I +LR T+S ++ Q +GRG Sbjct: 523 GEHSQAERDLAVEQLENGELDYIFTVDLFNEGVDIPHINQIVMLRQTQSSIIFTQQLGRG 582 Query: 342 LRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 LR A GK +++D+ GN + Y + D Sbjct: 583 LRKASGKDSVVVIDFIGNYANNYLIPIALYGNTGD 617 >UniRef50_B4UTX6 p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_BP163 Length = 576 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 130/427 (30%), Positives = 203/427 (47%), Gaps = 26/427 (6%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLA 56 + LR YQ+ ++DA ++ +IVLPTGAGK+LVIA+L A R+L + Sbjct: 1 MLDLRDYQRASLDALYAYWAEGGGNGLIVLPTGAGKALVIAKLIEELLADYPDMRILNVT 60 Query: 57 HVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 H LVAQN ++ L A IF+AGLKR+++ +V+F +QSV ++ G L+ Sbjct: 61 HDSRLVAQNFKEFIGLSPFAPAGIFSAGLKRRDARAQVLFCGIQSVWNKVEQI-GNVDLI 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 IVDE H I + +QY + + K NP R+ G TAT FR+ G + + Sbjct: 120 IVDEAHAISRNANTQYGKFFKAVRKHNPDSRVCGTTATDFRMDSGRLTDDLDDDEAVDEN 179 Query: 175 KA-----LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 A LF D +YE L +I+ GYLT + D + + G + + Sbjct: 180 GAPVRFKLFHDVVYEAKLGDLIEQGYLTRLTSQK-TAAKIDLKGIGTR-GGEYIPGQVAE 237 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGA 287 +RI I++ M + R+ + F+ + E+A+ + + A++T D Sbjct: 238 A---AERIIEEAIAEDMIASEGRRAGLFFSTSKENARHVAEAIRRHGRTCAVLTSDN-AH 293 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 E D + +F+A + + +V+++TTG + P VD I++L T+S QI+GRG R +PG Sbjct: 294 ETDKIFTDFRAGKIWAISSVSMITTGTNFPFVDFISLLLSTKSAGKLVQILGRGTRNSPG 353 Query: 348 KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ--VFCPACGFANTFWGKTTADGTLIE 405 KTDCL+ D+ N + P+ Q CP + GKT G LI Sbjct: 354 KTDCLVADHGRNLAYHGPIDQIQPREPGKGTGDQPRKLCP--QDSTDTEGKTGC-GELIP 410 Query: 406 HFGRRCQ 412 C Sbjct: 411 ISQMTCH 417 >UniRef50_Q8HAK4 Gp58 n=5 Tax=Caudovirales RepID=Q8HAK4_9CAUD Length = 614 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 211/474 (44%), Gaps = 43/474 (9%) Query: 4 TLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELAR-----LARGRVLVLAH 57 T R YQ EA D T + + TG GKSL+ A L + RV+ LA Sbjct: 5 TPRWYQAEAADELFGALATAKNTNPIAAIVTGGGKSLLNAMLIERIAQTWPQARVMSLAP 64 Query: 58 VKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS 112 EL+ QN + +A A I+ AGL+ K+ + +F + QSVAR F G F Sbjct: 65 SMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRMHQYIFATPQSVARQAKRF-GPFD 123 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++VDE H + + + + I+ NPH+R +G+TAT F + G Sbjct: 124 FVLVDEAH-LFNIDMKTARTIVDTFRAANPHVRFVGMTATDFIMKGLKAVPLTQCG---- 178 Query: 173 DEKALFRDCIYELP----LRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 LF +Y+L +++ GYL+P + Q D ++ + G F EA+L Sbjct: 179 ----LFDAKVYDLTSGRNFNRLVREGYLSPVVSPSLRFPQIDTEGVKTK-GGDFDEAELA 233 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPG 286 R + +T + +E A RK M FA +EHA I L E A +I G+ Sbjct: 234 R---RAMDVTRECVRVALEHAPDRKHFMWFAVNIEHAHMIEQALLDAGESAVVIHGELEK 290 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +ER + ++ + ++ R++V+VA+LTTGF+AP VD + LRPT S+ L++QIVGRGLR Sbjct: 291 SERVLGVDEYLKKQHRHIVSVAMLTTGFNAPFVDCLVALRPTRSLVLWRQIVGRGLRPYA 350 Query: 347 GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 GK + L+LD GN A + G D+ C + + DGT Sbjct: 351 GKENILVLDAGGNFGRHGA--INEEIGAGDSRAGLWVC-TSEEVRSPFPVKLPDGTTAP- 406 Query: 407 FGRRCQGWFEDDDGHREQCDFRFRFKN------CPQCNAENDIAARRCRECDTV 454 GR G + + +F R C ND CR+C Sbjct: 407 -GRERSGIRFPINSPEQP-EFDLRVILGLMEPDSEGCGYLNDAEHMTCRQCGRP 458 >UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW00_9BACL Length = 937 Score = 271 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 79/381 (20%), Positives = 155/381 (40%), Gaps = 41/381 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q+ ++ R +++ TG GK+ A + + R+L + H +++ Q Sbjct: 193 QRSFIEN-FEKLRNQDNKGLLISATGTGKTFAAAFAMKSIGAKRLLFIVHREQIARQALE 251 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRIG 123 ++ G K K +F +VQ++++ +F F +I+DE HR G Sbjct: 252 TFKTIFGTSRSYGLLTGKEKNIEADFIFSTVQTMSKEDIFKSFNDSHFDEIIIDEVHRAG 311 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 D Y +++ + LG+TA+P R IY+ + + +Y Sbjct: 312 AD---SYLRLMDYFK----PTFYLGMTASPDRTDSFNIYELFNN------------NIVY 352 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ +++ L P + ++ D + S + + + + HIIS Sbjct: 353 EVRLKEAMENSLLCPFHYFGISDLEVDGKVIDELS-------EFSNLVSNE--RVEHIIS 403 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKAQ 299 +I + R ++F ++ + AK + + +TG+ R+ I A Sbjct: 404 KINYYGYSGDRVKGLVFCSSKQEAKVLSEEFNTRGYNTTSLTGEDSQERREHEISKLVAN 463 Query: 300 R---FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR + K +I+D+ Sbjct: 464 DGDMLDYIFTVDIFNEGVDIPEVNQVIMLRPTQSFIIFIQQLGRGLRKSANKDFVVIIDF 523 Query: 357 AGNPHDLYAPEVGTPKGKSDN 377 N + + V S + Sbjct: 524 IANYKNNFLIPVALSGDNSYD 544 >UniRef50_D1VXH8 DEAD/DEAH box helicase n=13 Tax=Bacteroidales RepID=D1VXH8_9BACT Length = 391 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 107/374 (28%), Positives = 191/374 (51%), Gaps = 22/374 (5%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARGRVLVLAHVK 59 M + LR YQ++A DA + F+ K +I++ TG GKSL+IA++A +LV K Sbjct: 1 MKYILRDYQKQASDAAVKSFKSSKKINGLIIVSTGGGKSLIIADIASRLDSPLLVFQPSK 60 Query: 60 ELVAQNHAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 E++ QN AK Q+ G L+ ++A + K+ + ++ F ++ SV +++ F+ F ++VDE Sbjct: 61 EILQQNFAKLQSYGILDCGCYSASVGSKDIN-RITFATIGSVMNHMEDFK-HFKYVLVDE 118 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + + + Y++ + ++GLTATP+RL + +F Sbjct: 119 AH-VINSKGGMYEKFINA-----EERHVIGLTATPYRLSS--YMAGSMLKFLTRTRPRIF 170 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG-LFSEADLNRELKKQQRI 237 + +Y ++ G+L + D+ + D +++ S G + E L E ++ Sbjct: 171 SEVLYVCQTSDLLAKGFLADLKYYDLTAINLD--NVRSNSTGADYDEKSLKMEYERSGFF 228 Query: 238 TPHIISQIMEFAAT----RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 + + RKG+++F VE A+ +V L + + A ++TG+T ++R+ Sbjct: 229 DKLTTTTLRVLKPKSGVPRKGILVFTRFVEEAENLVRKLRSINIPAEVVTGNTSKSDREW 288 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E FK+ + + N VLTTGFD P +D + + RPT+S++LY Q VGR +R GK D Sbjct: 289 MLEKFKSGEIKVIANAQVLTTGFDYPELDTVIMARPTKSLALYYQCVGRAIRPFKGK-DG 347 Query: 352 LILDYAGNPHDLYA 365 I+D GN Sbjct: 348 WIIDLCGNYRRFGK 361 >UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Tax=Actinomycetales RepID=A0JTK4_ARTS2 Length = 1063 Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 33/361 (9%) Query: 22 RHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHVKELVAQNHAKYQALGLE 75 + ++V TG GK+++ A + ++L +AH +E++ Q Y+ + + Sbjct: 342 KGFNHNLLVAATGTGKTVIAALDYKRLCEAAGRDLKLLFVAHRQEILKQAMRTYRDVMQD 401 Query: 76 ADIFAAGL-KRKESHGKVVFGSVQSVAR-NLDAFQGEF-SLLIVDECHRIGDDEESQYQQ 132 + + K + K +F SVQS++ ++ + +F ++++DE H Y++ Sbjct: 402 GAFGELYVGEHKPAQWKHIFASVQSLSSLGIEQLEPDFFDVVVIDEFHHA---MAPTYRR 458 Query: 133 ILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIK 192 +L HL +LLGLTATP R + + + G EL L + Sbjct: 459 LLDHLQPQ----QLLGLTATPERGDGVDVAKQFFDGRTAS-----------ELRLWDALD 503 Query: 193 HGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEF--AA 250 L P + D S+L+ + G + LN +I ++ + + Sbjct: 504 ADLLVPFHYFGVSD-DVDLSQLEWK-RGNYDTTQLNNLYTGNDARAAKVIRELRDKVTST 561 Query: 251 TRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKAQRFRYLVNVA 308 + + F +V+HA + + A + G T A+R +E + + + V Sbjct: 562 DQMRAIGFCVSVQHAHYMAEVFNRAGIASVAVDGSTDDADRAAALERLRRREINCIFAVD 621 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV 368 + G D P VD I +LRPT+S +++ Q +GRGLR A GK ++D+ G + ++ Sbjct: 622 LYNEGLDLPQVDTILLLRPTQSATIFLQQLGRGLRRAEGKAVLTVMDFIGQQRREFRFDL 681 Query: 369 G 369 Sbjct: 682 R 682 >UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=Micromonospora RepID=C4RRI3_9ACTO Length = 1066 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 163/376 (43%), Gaps = 33/376 (8%) Query: 6 RPYQQEAVDATLNHFRR--HKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHV 58 PYQ E + A L+ R+ + ++V+ TG GK++V A R +L +AH Sbjct: 363 YPYQAEIL-ADLDTERQVHGRHRNLVVMATGTGKTVVAALDYRRLHRAGTVDSLLFVAHQ 421 Query: 59 KELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 ++++ Q+ + ++ + + R+ + + VF S+QS+ R + G + ++IVD Sbjct: 422 EQILRQSLSTFRQAIGDGSFGELLVGGREPTGWRHVFASIQSLHRR-EIDPGAYDMVIVD 480 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H E Y ++L L LLGLTATP R G + ++ Sbjct: 481 EFHHA---EAPTYARLLGRLR----PRVLLGLTATPDRADGGDVRRWFD----------- 522 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 EL L ++ L P + + D S L+ + + +L Sbjct: 523 -GRTAVELHLWEALERQLLAPFQYFGVHD-DVDLSHLRWKRGQGYDPGELGGVYTGNDAR 580 Query: 238 TPHIISQIMEFAA-TRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 ++S + + R + F ++ HA+ + +A +T + + L+ Sbjct: 581 ARIVLSSVRDKVDVHRMRALGFCVSIGHAEFMADWFTRHGVPSAAVTSRADRSAQHGLLR 640 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 +F+A + R L V + G D P VD I +LRPTES +++ Q +GRGLRL K +L Sbjct: 641 DFRAGKLRVLFTVDLFNEGVDLPMVDTILMLRPTESATIFLQQLGRGLRLDDDKPCLTVL 700 Query: 355 DYAGNPHDLYAPEVGT 370 D+ G H + ++ Sbjct: 701 DFIGGQHANFRFDLRW 716 >UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIT3_KYTSD Length = 1031 Score = 271 bits (692), Expect = 8e-71, Method: Composition-based stats. Identities = 94/378 (24%), Positives = 156/378 (41%), Gaps = 36/378 (9%) Query: 6 RPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLA------RGRVLVLA 56 RPY QQ +DA H ++V TG GK++V A + R+L +A Sbjct: 310 RPYPFQQVMLDALEAERVEHDRHRNLLVAATGTGKTVVAAFDYKRLCEATNTPRRLLFVA 369 Query: 57 HVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSV-ARNLDAF-QGEFSL 113 H E++ Q Y+ + + G + + VF +VQS+ A L + F + Sbjct: 370 HRWEILVQARRTYREILGDGTFGEMLGRGEEPRRWEHVFATVQSLTAERLGQLPRDHFDV 429 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE H + + Y+++LT L LLGLTATP R + Q + G Sbjct: 430 VVIDEFHHA---QAATYRRLLTALQPAE----LLGLTATPERADGVDVRQEFFGGRA--- 479 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 +EL L + G LTP + D S + A + G + A L Sbjct: 480 --------AHELRLWDALSEGLLTPFHYFGVHD-NTDLSAV-AFTRGRYDAATLESLYTG 529 Query: 234 QQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 ++ + + + + F V+HA+ + A +TG++ ER Sbjct: 530 NDARVLLVLKAVRDKVLDPRQMRAIGFCVGVQHAQFMARKFTEAGIPARAVTGESNDEER 589 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + ++ ++ + + G D P VD + LRPTES +++ Q +GRGLR K Sbjct: 590 SSVRQDLHHRKINVVFTADLYNEGVDLPEVDTVLFLRPTESSTIFLQQLGRGLRRHHDKA 649 Query: 350 DCLILDYAGNPHDLYAPE 367 LD+ G+ H + E Sbjct: 650 VLTALDFVGHQHANFRLE 667 >UniRef50_B2GAW8 Phage helicase n=5 Tax=root RepID=B2GAW8_LACF3 Length = 448 Score = 270 bits (691), Expect = 9e-71, Method: Composition-based stats. Identities = 115/478 (24%), Positives = 184/478 (38%), Gaps = 86/478 (17%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L YQQE VD + ++V P G+GKS++IAE+ RLA G V+ + H Sbjct: 1 MFKLFGYQQELVDKARQSLAKGNHSVLLVSPAGSGKSVIIAEITRLAIEKGGHVMFMVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KELV Q + LK +V + R L +L+I DE Sbjct: 61 KELVDQIIDTF-------------LKDDIDLSHTTVMTVGKIKRRLGKLPTP-TLIITDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H YQ I ++ LG +ATP+RL + K ++ Sbjct: 107 THH---SLAKTYQDIYNWYD----NVPRLGFSATPWRLSGKGL-------------KNVY 146 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 D + ++++I + YL D S+L+ S G ++ ++ + I Sbjct: 147 DDMVEGPSVQWLIDNSYLADYTMYGYK--SGDDSQLKKSSTGDYTGRSMDD--YAKTIIR 202 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 +I E A RK + ++ V +K++ + AA + TP ER ++ +F Sbjct: 203 GDVIKTWREKANERKTI-VYCHAVWFSKQVAQVFNNAGIKAAHVDSKTPSGERSKIMVDF 261 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 KA + L N +++ GF+ P + +LRPTES+ LY Q R +R PGK +I+D Sbjct: 262 KAGKIMVLCNCDLISEGFNVPDCSCVVLLRPTESLVLYIQQSMRPMRFVPGK-HAVIIDQ 320 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN P+ W T D + G G Sbjct: 321 VGNFKKFGTPDTPR----------------------TW--TLEDRKKKKGNGGGQLGP-- 354 Query: 417 DDDGHREQCDFRF-----RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLK 469 C+ F + ++CP C AE ++ + +D D L + K Sbjct: 355 ----PVRTCEKCFAVIPAQSRSCPICGAEIEVTK------TELDIDRDANLDDVTQFK 402 >UniRef50_C3R6R4 DEAD/DEAH box helicase n=33 Tax=Bacteroides RepID=C3R6R4_9BACE Length = 789 Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats. Identities = 106/384 (27%), Positives = 169/384 (44%), Gaps = 40/384 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR----VLVLAHVK 59 +LR YQQE + H++ ++ +PTG GK+ ++A + R R V ++AH + Sbjct: 7 SLRDYQQEMKSRLFKEWEFHQS-VMVQMPTGTGKTHLLAAVVREFLHRSGTCVWIVAHRR 65 Query: 60 ELVAQNHAKYQALGL---EADIFAAGLKRKES----HGKVVFGSVQSVARNLDAFQGEFS 112 ELV Q G+ G RK S G V S+Q ++RN + Sbjct: 66 ELVQQIEETVARYGMGKEPDKSGKNGRMRKNSMPEESGTVKVLSIQWLSRNWKNMEESPG 125 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+++DE H + L K P R LG+TATP RL Sbjct: 126 LIVIDEAHHALAETY-------KELWKRYPEARKLGMTATPCRLNGKGFTD--------- 169 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL----QAQSNGLFSEADLN 228 LF I + I G+L+ + + + + + + ++G + ++N Sbjct: 170 ----LFDTLITSWSIAEFIGKGWLSAFDYVSIRANSREQRMINSLKKRGADGDYQVKEMN 225 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 L +Q I + + ++A +KG+ ++A ++ HA++I A A I TP Sbjct: 226 EVLNRQVSI-RRLYESVEKYANGKKGI-VYAVSIAHARQIAACYSAHGVEAVAIDSKTPA 283 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +ER L+E FK R R LVNV + + GFD P V+ + + RPT S+ Y Q VGRGLR + Sbjct: 284 SERRELVEGFKQGRTRVLVNVDIFSEGFDCPDVEFVQLARPTLSLVKYLQQVGRGLRKSG 343 Query: 347 GKTDCLILDYAGNPHDLYAPEVGT 370 K C+++D G P Sbjct: 344 DKESCMLIDNVGLHRIFGLPVRDR 367 >UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXK7_9BACT Length = 445 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 168/356 (47%), Gaps = 31/356 (8%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVA 63 LR YQ A +A F H+ ++VLPTG GK++V+A LA + R LVLAH +EL+ Sbjct: 10 LRGYQVAAHEAIQRGFAEHQ-RQLLVLPTGGGKTVVLAHLAATHQPRRTLVLAHREELIT 68 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECH 120 Q K +A+ R + VV SVQ++ R + + F LL+VDE H Sbjct: 69 QAVDKIRAVTGLIPEVEMADFRASLNAPVVVASVQTLVRSSRRERWPHDHFGLLVVDEAH 128 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 D Y L + + + +LG+TATP R K + ++ +++ Sbjct: 129 HSLAD---SYLNTLRYFDE---NAFVLGVTATPDRGDKKNLGRY-------------YQN 169 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 YE+ L +++ +L+P +P+ + D + + G ++ DL ++ Sbjct: 170 IPYEVTLLDLVQQNWLSPIRVKTVPL-EIDLDDVGTTA-GDYNAQDLGHAIEPYLERVAD 227 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 ++++ ++ + +++F + ++ L D +R ++ F+ Sbjct: 228 VLAEHVQ-----RKILVFLPLISLSRGFAELCRQRGLRAEHVDGTSDDRGDILARFRRGE 282 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 R L N +LT G+D P +D + LRPT+ SLY QIVGRG RL PGK L+LD+ Sbjct: 283 TRVLTNAMLLTEGYDEPSIDCVVCLRPTKIRSLYSQIVGRGTRLYPGKDHLLLLDF 338 >UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPL2_9DELT Length = 978 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 161/370 (43%), Gaps = 38/370 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA++ R ++ TG GK+ + A + + + + L +AH ++++ + Sbjct: 365 QSEALEGLKKLRTRKARSGAVIAATGVGKTYLAAFDFIQSGKDKCLFIAHREDILRKARE 424 Query: 68 KYQA-LGLEADIFAAGLKRKESHG-KVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRI 122 + LG E +G + S+G K VF +Q++ R N+ F EF +++DE H Sbjct: 425 SFSHVLGPEGLEIFSGRSKDVSYGSKAVFAMIQTLGRQGNMKRFHPREFDYIVMDEFHHA 484 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 + Y+++L + P LLGLTATP R+ + + + Sbjct: 485 ---MANTYRKVLDYF---QPDF-LLGLTATPERMDGRDVLWLCDY------------NIA 525 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L I L P + + D++++ + + + +L L R T I Sbjct: 526 YEMRLFQAIDKELLAPFQYFAVHDPT-DYAQIAWKRT-DYDQEELTMALANDTR-TALIA 582 Query: 243 SQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED---AALITGDTPGAERDVLIENFK 297 + + +F + + F ++V+HA L E A + GD+ +R+ +I + Sbjct: 583 NNLKKFLPYQGKIKALAFCSSVDHAHYTANRLTQEHGFEATALVGDSSQEQREKVIARLE 642 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT---DCL 352 + + V + G D P + + +LRPT+S +++ Q +GRGLR K + Sbjct: 643 KENDPLKVICCVDIFNEGVDIPSLSHVLLLRPTQSFTVFLQQIGRGLRKVQTKDVNKHLV 702 Query: 353 ILDYAGNPHD 362 ++D+ GN Sbjct: 703 VIDFVGNYRS 712 >UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=B1VE55_CORU7 Length = 969 Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 164/382 (42%), Gaps = 41/382 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-RGRVLVLAHVKELVAQNHA 67 Q EA++ + + A+++ TG GK+++ A R A + L L H ++++ + Sbjct: 220 QVEALENINRLRSQGEQRALVISATGTGKTILGALAVRSANPKKFLFLVHTEQILDRAML 279 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 +Q + + +E + F ++ S++R NL + F +IVDE HR Sbjct: 280 DFQKVLGAGPEEFGKFAGSSRELGKRYTFATIASLSRPENLYKLSQDYFDFIIVDEVHRA 339 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 E + Y +I+ HL P LLGLTATP R I++ +H + Sbjct: 340 ---EAATYVRIIEHLK---PDF-LLGLTATPERTDGKSIFERFHH------------NVA 380 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + + N + E L +R+ HI+ Sbjct: 381 YEIRLQKALEEKMLVPFNYYGVTDYT------DNEGNVVDDEFSSLARLCAPERV-KHIV 433 Query: 243 SQIMEFA-ATRKGVMIFAATVEHAKEIVGLLPAEDA--------ALITGDTPGAERDVLI 293 + + + A +IF + VE A+E+ LL E AL + AER + Sbjct: 434 NMLNTYGFAGDVKGLIFCSRVEEAEELSRLLNKEKVYGRTLRTLALSSQYFTVAERQKAV 493 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 E + YL+ V + G D V+ I +LRPTES ++ Q +GRGLR GK + Sbjct: 494 ERLENGELDYLLTVDIFNEGIDIRSVNQIVMLRPTESSIIFTQQIGRGLRKCEGKDHLRV 553 Query: 354 LDYAGNPHDLYAPEVGTPKGKS 375 +D+ GN + + +S Sbjct: 554 IDFIGNYKKNFLIPIALFGERS 575 >UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=A4QW28_MAGGR Length = 643 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 146/369 (39%), Gaps = 49/369 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPA-----VIVLPTGAGKSLVIAELARLARGRVLVLAH 57 +LR YQ+E + A L+ + T + L+LAH Sbjct: 43 ISLRSYQEECIQAVLSSLENGHKRIDRVPPISKTAT-----------------QTLILAH 85 Query: 58 VKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA---RNLDAFQGEFSL 113 +ELV Q + + G + SVQS+ R F L Sbjct: 86 RRELVEQAARHCTNAYPDKTVEIEMGSTHSSGLADITVASVQSIISGDRMAKFDASRFKL 145 Query: 114 LIVDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 ++VDE H I Y + L H +K L+G++AT R + Sbjct: 146 VLVDEAHHI---VAPGYLKTLAHFGLASKQQTSPHLVGVSATFSRFDGLRL--------- 193 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 A + +Y MI +L+ D SR + +N F ++L+R Sbjct: 194 ----GAAIDEIVYHKDYVDMIGDKWLSDV-LFTTVESSADISRARTGANADFLPSELSRA 248 Query: 231 LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA--EDAALITGDTPGAE 288 + + + + M A RK ++F + H + DA +TGDT E Sbjct: 249 VNTNE-VNEITVRSWMAKAPGRKSTLVFCVDLAHVNGLTQKFREFGIDARFVTGDTHKVE 307 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R +E F+A +F LVN V T G D P++D + + RPT+S +L Q++GRG+RL PGK Sbjct: 308 RSERLEEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLARPTKSRNLLVQMIGRGMRLHPGK 367 Query: 349 TDCLILDYA 357 +C I+D Sbjct: 368 KNCQIIDMV 376 >UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax=Actinomycetales RepID=D2SCI9_9ACTO Length = 1035 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 96/382 (25%), Positives = 163/382 (42%), Gaps = 35/382 (9%) Query: 3 FTLRP--YQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARG-----RVLV 54 +RP YQQE ++A H ++V+ TG GK++V A R R R+L Sbjct: 315 LDVRPFGYQQEILEALDAERTVHGRWRNLVVMATGTGKTVVSALDFRRLRESGMVDRLLF 374 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVAR-NLDAFQG-EF 111 +AH +EL+ Q+H+ + + + D + ++ + VFGSVQS+ + +L F Sbjct: 375 VAHREELLTQSHSTLRHVLRQGDFGELFVGGQRPREWRHVFGSVQSLNQLDLGELDPSHF 434 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 ++IVDE H E S Y+++L HL LLGLTATP R + + Sbjct: 435 DVVIVDEFHHA---EASTYRRLLEHLK----PTVLLGLTATPERTDGADVRTWFG----- 482 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 EL L ++ L P + + RL+ + + +L+ Sbjct: 483 -------GRTAVELRLWEALEQNLLAPFQYFGVHD-DVALDRLRWKRGRGYDVTELSNVY 534 Query: 232 KKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 ++ + + R + F +++HA+ + + +T + Sbjct: 535 TGDDHRVRLVLQAVKDKVEDPGRMRALGFCVSIQHAQYMADRFTRAGIPSRAVTSTSSRE 594 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER + + + L V + G D P VD + LRPTES +++ Q +GRGLRLA Sbjct: 595 ERAAALAALRDRAVNVLFTVDLFNEGLDIPTVDTVLFLRPTESATVFLQQLGRGLRLAED 654 Query: 348 KTDCLILDYAGNPHDLYAPEVG 369 K +LD+ G H + ++ Sbjct: 655 KACLTVLDFIGAQHKKFRFDLR 676 >UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax=Deltaproteobacteria RepID=C6E151_GEOSM Length = 1042 Score = 268 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 153/392 (39%), Gaps = 41/392 (10%) Query: 1 MIFTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAEL------ARLARGR 51 + F LRP+ Q+ ++A H +++ TG GK+++ A A+ + R Sbjct: 304 IFFDLRPHPFQERILEALARERTSHDRWRNLVIAATGTGKTVIAAFDFKNFFEAKRRQAR 363 Query: 52 VLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKES-HGKVVFGSVQSVA-RNLDAF-- 107 +L +AH E++ + ++ + + + + ++ + +F SV +A R L Sbjct: 364 LLFIAHRLEILQKAQGTFRNVLRDQNFGELLVGEYQAVRLEHLFCSVGMLANRRLWEQVG 423 Query: 108 QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 G + +++DE H S Y+ I + LLGLTATP R+ G + + Sbjct: 424 SGFYDYIVIDEAHH---STASSYRPIFENFAPEI----LLGLTATPERMDGGNVAADFGN 476 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 E+ L ++ L P + S Q NG ++E+ L Sbjct: 477 RFAA------------EIRLPEALEEKLLCPFHYFGVADP-IAISGEQFWRNGKYNESAL 523 Query: 228 NRELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKEIVGLLPAED--AAL 279 + I+ + + F T+ HA + + Sbjct: 524 ENVYVMDNVRAKQRVDAIITALTRYEPDLSNVKGVGFCVTIRHAHFMAEQFSKRGIPSGA 583 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 L+E+ R +L V L+ G D P ++ + LRPTES++++ Q +G Sbjct: 584 FVSGVEDDRCSKLLEDLSTGRLTFLFTVDKLSEGVDIPLLNTVLFLRPTESLTVFLQQLG 643 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYAPEVGTP 371 RGLR APGK ++D G H Y ++ Sbjct: 644 RGLRHAPGKDCLTVIDLVGQAHRRYRADIKLK 675 >UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5U0_9BACT Length = 786 Score = 268 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 90/426 (21%), Positives = 172/426 (40%), Gaps = 59/426 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLA 56 IF R YQ+ A++ T+N + ++ ++V+ TG GK+ ++ + +VL LA Sbjct: 166 IFPPRYYQRNAINRTVNAIAKGQSRVLLVMATGTGKTYTAFQIVWRLLHSKLKKKVLYLA 225 Query: 57 HVKELVAQNHAK----YQALGLEADIFAAGLK-RKESHGKVVFGSVQSV--------ARN 103 LV Q+ + + + + D + S +V F Q + + Sbjct: 226 DRNILVDQSIQQDFNPLKKVTHKIDYSKDKNHLEELSSYQVFFALYQQLIGQNDAKNYQE 285 Query: 104 LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 L F L+IVDECHR ++S ++ IL + + +G+TATP Sbjct: 286 LFPNPDYFDLVIVDECHRGSAKDDSNWRNILDYFSSATH----IGMTATPKETKYQSSIG 341 Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV---VQYDFSRLQAQSNG 220 + F + IY L+ I+ G+L P + +++ ++ ++ Q +G Sbjct: 342 Y-------------FGEPIYTYSLKNGIEDGFLAPFKVINITTNIGDEWRPTKGQKDIHG 388 Query: 221 ------LFSEADLNRELKKQQRI--TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL 272 +++ +D + + + RI I+ ++ ++F A HA+ + L Sbjct: 389 NEIEDRIYNNSDYDYNIVIEDRIREVAQEITNYLKSTDRMAKTIVFCADETHAERMRMAL 448 Query: 273 PAEDAALITGDTPGAERDVLIENFKAQRFRYLVNV-----------AVLTTGFDAPHVDL 321 +A + + R + + + Y ++V +L+TG D L Sbjct: 449 TNANADMCKKNPDYVVRITGSDEYGKSKLDYFISVAEKYPVIATTSKLLSTGVDCKMTKL 508 Query: 322 IAILRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 I + + S++ ++QI+GRG RL GKT ++D+ PE P N P Sbjct: 509 IVLDQQIGSMTEFKQIIGRGTRLREKEGKTYFTVMDFRNVTRLFADPEWDGPIEIDPNYP 568 Query: 380 VQVFCP 385 + P Sbjct: 569 PKEKEP 574 >UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=D0KYE6_HALNC Length = 783 Score = 267 bits (683), Expect = 7e-70, Method: Composition-based stats. Identities = 99/428 (23%), Positives = 163/428 (38%), Gaps = 75/428 (17%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------------- 48 F R YQ A++ L H++ ++ L TG GK+ + +LA Sbjct: 150 FQSRYYQDIAIERVLAAIADHQSRILLTLATGTGKTFIAFQLAWKLFHSRWNLRDWQREA 209 Query: 49 ----RGRVLVLAHVKELVAQNHAKYQALGLEADIFAA-----GLKRKESHGKVVFGSVQS 99 R R+L LA L Q + A +A + R +G + F Q+ Sbjct: 210 EPSRRPRILFLADRNILANQAFNAFSAFPEDALVRIDPADIRKQGRVPKNGSLFFTIFQT 269 Query: 100 VARNLDAF-----------QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLG 148 DA F +I+DECHR G ++ES ++ IL + LG Sbjct: 270 FMSGQDAEGQPAPYFGDYPPDFFDCIIIDECHRGGANDESNWRGILAYFAPAVQ----LG 325 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV- 207 LTATP R YQ+ F + ++ L+ I G+LTP + Sbjct: 326 LTATPKRKDNVDTYQY-------------FGEPVFVYSLKDGINDGFLTPFRVKQIATTL 372 Query: 208 -------QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAA 260 + ++ + EAD N+ ++ ++R + M R+ ++F A Sbjct: 373 DEYVYTPDDTLVEGEIEAGKRYEEADFNKIIEIKER-EQKRVEIFMAQIDQREKTIVFCA 431 Query: 261 TVEHAKEIVGLLPAEDAALITGDTPGAER---------DVLIENFKAQR---FRYLVNVA 308 T EHA + L+ + + + +R + + +F+ L Sbjct: 432 TQEHALAVRDLINQIKS---SSNPDYCQRVTANDGARGEHYLRDFQDNEKTIPTILTTSQ 488 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV 368 L+TG DA +V I ++RP S+ ++QI+GRG RL GK I D+ H PE Sbjct: 489 KLSTGVDARNVRNIVLMRPVNSMIEFKQIIGRGTRLYDGKDYFTIYDFVKAHHHFNDPEW 548 Query: 369 GTPKGKSD 376 + + Sbjct: 549 DGEPLEPE 556 >UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 Tax=cellular organisms RepID=T1RA_ECOLX Length = 810 Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats. Identities = 90/442 (20%), Positives = 174/442 (39%), Gaps = 62/442 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 + R YQ +A++ T+ + ++V+ TG GK+ ++ + R+L LA Sbjct: 169 SPRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADR 228 Query: 59 KELVAQNH-AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV------ARNLDAFQGE- 110 LV Q +Q G + + + ++ Q++ + + Sbjct: 229 NILVDQTKNNDFQPFG--TAMTKVSGRTIDPAYEIHLALYQAITGPEEDQKAFKQVAPDF 286 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+++DECHR E+S +++IL + + +GLTATP + + Sbjct: 287 FDLIVIDECHRGSASEDSAWREILDYFSSATQ----IGLTATPKETHEVSSTDY------ 336 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPER----LDMPVVQYDFSRLQAQSNGL----- 221 F D +Y L+ I+ G+L P + +D+ + + ++ Q NG Sbjct: 337 -------FGDPVYVYSLKEGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQTDLNGEVIDDR 389 Query: 222 -FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL------ 272 +++ D +R + +R + I+ ++ ++F ++HA+ + L Sbjct: 390 IYNQKDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRALVNLNPE 449 Query: 273 ----PAEDAALITGDTPGAERDVLIENFKAQRFRYLV---NVAVLTTGFDAPHVDLIAIL 325 + ITGD ++NF + Y V ++TTG DA L+ + Sbjct: 450 QVKKNDKYVMKITGDDEIG--KAQLDNFINPKKPYPVIATTSELMTTGVDAKTCKLVVLD 507 Query: 326 RPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEV-GTPKGKSDNVPVQV 382 + +S++ ++QI+GRG R+ GK ILD+ G P+ D P + Sbjct: 508 QNIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGIPEKVMDTTPEDI 567 Query: 383 FCPACGFANTFWGKTTADGTLI 404 P F + D + Sbjct: 568 ADPESDFEEKLEEISEHDEEQV 589 >UniRef50_B4WJ71 Type III restriction enzyme, res subunit family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJ71_9SYNE Length = 544 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 99/400 (24%), Positives = 164/400 (41%), Gaps = 36/400 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVKE 60 LRPYQ+ + I+ TGAGK+++ ++ A A R++ L H+ Sbjct: 22 KLRPYQETLIKDLYKELNAGHKRVAIIAGTGAGKTVISGQICAHAEAAGKRLMFLVHLDV 81 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LV Q + K +A GL+ AG + + S+Q++A+ + ++ DE H Sbjct: 82 LVGQTYEKMKAFGLQCGFIKAG-WEENRDAPIQIASIQTMAKRRWWQKWPADVVFYDEGH 140 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 + + TH V+ L +TATP RLGK + + + L Sbjct: 141 ITLFSQVGKKVMTKTHANAVH-----LVMTATPLRLGKEQLGDYL---------ETLVSS 186 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 + + + + GYL+ + MP + G + E DL + + + Sbjct: 187 PVPNV----LQEMGYLSTMKYYSMPRDSMANLEAVKTARGDYDEQDLKNACDRIE-LVEK 241 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 I+ + ++ + F +EHA + A + G+T ER L + K Sbjct: 242 IVQEWFRIGKGKRTI-AFCVDIEHANHVAAEFQKAGISAETVDGNTSIKERKRLYQALKV 300 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDY 356 L + V++ GFD P V++ +LRPT S +++ Q +GR +R++P GK +ILD Sbjct: 301 GELMVLTSCNVISIGFDEPSVEVGLMLRPTMSSAMHFQQLGRVMRISPQTGKEYGIILDQ 360 Query: 357 AGNPHDLYAPE--------VGTPKGKSDNVPVQVFCPACG 388 AGN L PE P CPACG Sbjct: 361 AGNLQRLGFPEDIESYSLPTRAASSGGGGAPPTKPCPACG 400 >UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=A1SRA3_PSYIN Length = 860 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 95/462 (20%), Positives = 160/462 (34%), Gaps = 96/462 (20%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------------------ 45 R YQ+ A++ L K ++ L TG GK+ + + A Sbjct: 161 QPRYYQENAINQALEAIALGKDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSN 220 Query: 46 RLARGRVLVLAHVKELVAQNHAKYQALGLEADI-----FAAGLKRKESHGKVVFGSVQSV 100 R R+L LA L Q + A G +A + K + + Q++ Sbjct: 221 AKKRPRILFLADRNILTKQAFNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTL 280 Query: 101 ARNLDAF---------------------------------QGEFSLLIVDECHRIGDDEE 127 + + + F +I+DECHR G ++E Sbjct: 281 MTDSASNPTNDSDEEELPEDEDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDE 340 Query: 128 SQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPL 187 S ++ IL + LGLTATP R Y++ F + +Y L Sbjct: 341 SSWRDILNYFAPAVQ----LGLTATPKRTDNVDSYKY-------------FGEPVYSYTL 383 Query: 188 RYMIKHGYLTPPERLDMPVVQYDFS---------RLQAQSNGLFSEADLNRELKKQQRIT 238 + I G+LTP + + ++ + + ++ ++ E D NR + QR Sbjct: 384 KEGINDGFLTPFKVYPIVGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQR-E 442 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTP----------GAE 288 + M+ ++F T EHA + + P GA Sbjct: 443 QKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYAVQKGWTTNPTYCVRITANDGAA 502 Query: 289 RDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 + + F L L+TG DA +V I ++RP ++ ++QI+GRG RL Sbjct: 503 GENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTRLY 562 Query: 346 PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPAC 387 GK+ + D+ H+ PE P + C C Sbjct: 563 DGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDIC 604 >UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Clostridiales RepID=C7GA84_9FIRM Length = 993 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 148/394 (37%), Gaps = 50/394 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q + + A+++ TG GK+ + L RVL L H +L Q Sbjct: 228 QVGFITNLKKILAAGEKRALLISATGTGKTYASAFAMRELGFRRVLFLVHRGQLARQTRK 287 Query: 68 KYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIG 123 Y+ + + G E VF +VQ++ R+ L + F +++DE H + Sbjct: 288 SYEKVFANTVSMGLVGAGYHEYEADYVFATVQTLNRDEHLLQYAKDAFDCIVLDEAHHVP 347 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 D Y++I+ H T LG+TATP + + Y Y Sbjct: 348 AD---TYRKIMDHFTPK----LWLGMTATPDKRDDNVEGRNVYEIFNY--------QIAY 392 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ L P + D S + + + D N + HI++ Sbjct: 393 EIRLQQAMEENLLCPFHYFGIT----DLSMIGDEE----AARDFN--MLTSDERVRHIVN 442 Query: 244 QIMEFAATRKGVM--IFAATVEHAKEIVGLLP---------AEDAALITGDTPGAERDVL 292 Q + + V IF + ++ +E+ + G ER Sbjct: 443 QADYYGYSGDKVKGLIFCSNIKETEELSAKFNQIINPATGKNFRTVALNGSASEQERQDA 502 Query: 293 IENFKAQR---------FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 E Y+ +V +L G D V+ + +LRPT+S ++ Q +GRGLR Sbjct: 503 FERLAMNEDESSEDRQPLDYIFSVEILNEGVDIVEVNQVIMLRPTQSPIVFIQQLGRGLR 562 Query: 344 LAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDN 377 A GK +ILD+ GN ++ + + ++ N Sbjct: 563 KASGKEYVVILDFIGNYNNNFMIPIALSGDRTYN 596 >UniRef50_C4WDM0 Phage DNA/RNA helicase n=1 Tax=Staphylococcus warneri L37603 RepID=C4WDM0_STAWA Length = 472 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 114/540 (21%), Positives = 205/540 (37%), Gaps = 95/540 (17%) Query: 1 MI----FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VL 53 M+ F L YQ++ VD H +K+ +I P G+GKS++IAE+ + A + +L Sbjct: 1 MMWMTTFKLYDYQEKLVDQAR-HILLNKSGVLIQSPPGSGKSVMIAEVVKNAVNKGNHIL 59 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSL 113 + H KEL Q ++ +++ A+N+ + Sbjct: 60 FIVHRKELSHQIKNTLTKHDVDLSQVDILSEKR--------------AKNIMHELTPPKI 105 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 ++ DE H Y+ I + P+ +G TATP+R Sbjct: 106 IVTDETHH---SRAKTYKDIYDYF----PNALRVGFTATPWRANSKGFTD---------- 148 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 ++ + + + ++IK+ L + + + D S+L+ S G F++ ++ + Sbjct: 149 ---IYDEMVKGPSVEWLIKNKRLADYDYKSVVLA--DESKLKKSSTGDFTKKSIDNAI-- 201 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDV 291 + I I+ ++A +K + ++A +VE +K+I +AA T ER Sbjct: 202 PKGIYGDIVENYQKYANGQKTI-LYAHSVEASKDIAEQFKLNGINAAHADAKTNIKERTQ 260 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E+FK + L NV +++ GFD P + + RPT+S+ L+ Q R +R P K Sbjct: 261 IMEDFKKGAIKVLCNVDLISEGFDVPDCTCVILARPTDSLVLFMQQAMRSMRYQPNKK-A 319 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 LI+D+ GN P+ W K G + Sbjct: 320 LIIDHVGNYARHGLPDTPHD----------------------WKKYFK--------GFKK 349 Query: 412 QGWFEDDDGHREQCDFRFRF-----KNCPQCNAENDIAARRCRECDTVLVDPDDMLKAAL 466 + E+DD + C+ F CP C N+ ++ L + D L Sbjct: 350 RKSKENDDIGLKTCNQCFTVYSSELYECPNCGHINETEEKK------GLENYDAELTDIK 403 Query: 467 RLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSE-RFRLQTPAQRTA-FEQLFI 524 K L + + E E L+ Y + E + P + A F L+ Sbjct: 404 PFKVDYTLM--QYDKRKKNKEDLETLEDYYLFAKANNYKESWIKFNNPYYKNAPFPVLYA 461 >UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X332_DESRD Length = 979 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 165/369 (44%), Gaps = 38/369 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLARGRVLVLAHVKELVAQNHA 67 Q EA++ L R ++ TG GK+ + A + + + + L +AH ++++ + Sbjct: 366 QGEALEGLLKLRNRKARSGAVIAATGVGKTYLAAFDFIQSGKDKCLFIAHREDILRKAKE 425 Query: 68 KYQA-LGLEADIFAAGLKRKESHG-KVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 + LG E +G ++ SHG + VF +Q++ R N++ F E F +++DE H Sbjct: 426 SFSHVLGPEGLEIFSGRSKEISHGSRAVFAMIQTLGRQDNMERFHPEEFDYIVMDEFHHA 485 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 + Y+++L + P LLGLTATP R+ + + + Sbjct: 486 ---MAATYRRVLDYF---QPDF-LLGLTATPERMDGRDVLWLCDY------------NIA 526 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L I L P + + D++++ + + + +L + L R T I Sbjct: 527 YEMRLFQAIDKELLAPFQYFAVHDPT-DYAQISWKRT-DYDQEELTKALANDTRTT-IIA 583 Query: 243 SQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED---AALITGDTPGAERDVLIENFK 297 + + +F + + F ++V+HA+ L E A + GD+ +R+ + + Sbjct: 584 NNLKKFLPYQGKIKALAFCSSVDHAQYTAARLTQEHDFEAMALVGDSSQDQREEAVARLE 643 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT---DCL 352 + + V + G D P + + +LRPT+S +++ Q +GRGLR + + Sbjct: 644 EENDPLKLICCVDIFNEGIDIPKLSHVLLLRPTQSFTVFLQQLGRGLRKIQSEDVEKHLV 703 Query: 353 ILDYAGNPH 361 ++D+ GN Sbjct: 704 VIDFVGNFR 712 >UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019764F2 Length = 1061 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 95/402 (23%), Positives = 161/402 (40%), Gaps = 53/402 (13%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-VLVLAHVKELVAQNHA 67 Q+EA+ + + + A+IV TG GK+ + A R R R +L +A + ++ Sbjct: 252 QKEALASLKKLREQGEHRAIIVSATGTGKTYLSAFDVREYRPRRMLYIAQQQMILKAAMK 311 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF----QGEFSLLIVDECHR 121 YQ + ++++ K+ + VF +VQ++ R +A EF ++VDE H Sbjct: 312 SYQKVLGCPQSELGLYTGTSKQQDRRYVFATVQTM-RQPEALAQFASDEFDYVLVDEVHH 370 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 G + YQ+++ H + +LG+TATP R I++ H + Sbjct: 371 AGAEG---YQRVIDHFRDAD---FMLGMTATPERTDGINIFELFGH------------NI 412 Query: 182 IYELPLRYMIKHGYLTPPERLDM-------PVVQYDFSRLQAQSNGLFSEA-DLNREL-- 231 YE+ L+ + L P + D RL E+ L E+ Sbjct: 413 AYEIRLQKALDENMLCPFHYYGVAEYLGSDEDADQDMHRLDVSQGLDAKESKQLKYEIGQ 472 Query: 232 KKQQRITPHIISQIMEFAATRKGVM--IFAATVEHAKEIVGLLPAE---------DAALI 280 ++ +II ++ E+ V +F + E A E+ L A + Sbjct: 473 LATEQRVRYIIDKLQEYGQFGIPVTGLVFCSRQEEAHELSRLFNEHWNQQAERPYRTAAV 532 Query: 281 TGDT------PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 T +RD + YL V + G D P V+ I +LR TES ++ Sbjct: 533 TSKDVNGKPLSQEKRDEYVRRLTDGELDYLFTVDMFNEGVDIPAVNQIVMLRSTESSIIF 592 Query: 335 QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 Q +GRGLR P K +++D+ GN ++ Y V D Sbjct: 593 TQQLGRGLRKFPYKDSVVVIDFIGNYNNNYLIPVALYGNTGD 634 >UniRef50_D2RKS9 Type III restriction protein res subunit n=2 Tax=Acidaminococcus RepID=D2RKS9_ACIFE Length = 1061 Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 154/384 (40%), Gaps = 42/384 (10%) Query: 3 FTLRPY--QQEAVDAT-LNHFRRHKTPAVIVLPTGAGKSLVIAELARL------ARGRVL 53 FT+RPY QQ +DA + R + +IV TG GK+ + A R R+L Sbjct: 319 FTIRPYPYQQVILDALDVERKERGRWHNLIVAATGTGKTAISAFDYRRFAASRPEGARLL 378 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFA-AGLKRKESHGKVVFGSVQSV--ARNLDAFQGE 110 +AH KE++ Q+ + ++ + + + A + H VF S+Q+ D + + Sbjct: 379 FIAHRKEILEQSLSCFRQVLKDPNFGELAVAGSRPEHLDQVFMSIQTCNSLSLWDHLEPD 438 Query: 111 F-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 F ++IVDE H YQ +L P + LLGLTATP R+ I + Sbjct: 439 FYDMIIVDEFHH---SAAQSYQNLLHWF---QPKI-LLGLTATPERMDGKDILHWFDD-- 489 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 E+ L I+ L P + D S ++ +NG + L Sbjct: 490 ----------HIAAEIRLPAAIERRLLCPFHYFGVADT-VDLSHVKW-TNGHYDTGALTN 537 Query: 230 ----ELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAEDAA--LIT 281 E I+ + + A + + F + +HA + + Sbjct: 538 LYVMESHTANNRAQAILQAVERYTADWQDIHGVGFCVSQDHAHFMADYFNDNGIPSLALN 597 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 + +R + ++ +L V + G D P ++ I LRPT S++++ Q +GRG Sbjct: 598 AHSSEEDRQSARQKLESGALTFLFVVDLFNEGVDIPCINTILFLRPTNSMTVFLQQLGRG 657 Query: 342 LRLAPGKTDCLILDYAGNPHDLYA 365 LRL GK +LD+ + Y Sbjct: 658 LRLDQGKDCLTVLDFVAQANRKYD 681 >UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NIB5_METST Length = 937 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 77/381 (20%), Positives = 145/381 (38%), Gaps = 50/381 (13%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ + ++ +++ TG GK+ L + ++L L H +++ Q Sbjct: 198 QKSFIKNLRKSLAKNDKKGLLISATGTGKTFASAFALKEINPKKILFLVHREQIAKQAMK 257 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA---FQGEFSLLIVDECHRIGD 124 Y + E + +K+ +F +VQ +++ + + F +++DE HR G Sbjct: 258 SYGKIFHEKTLGILSGNKKDYSVDFLFSTVQMMSKKENYERYNRDYFDFIVIDEVHRAGS 317 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 YQ+I+ + + LG+TATP R + IY H + IYE Sbjct: 318 V---SYQKIMNYFN----PIFYLGMTATPDRSDEFDIYSLFNH------------NIIYE 358 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + L+ ++ L + D + + + +II Sbjct: 359 IRLKNALEEDMLCSFNYFGITDNAIDVNDM-------------------SKTRIDNIIEN 399 Query: 245 IMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKAQR 300 I + +R +IF + +AK + ++G+ ER I+ Sbjct: 400 IEYYGYSGSRVKGLIFCNNIHNAKILSKEFNNRGYRTLSLSGNNTQKERKDTIDRLVNDD 459 Query: 301 ----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 Y++ V + G D V+ I +LR TES ++ Q +GRGLR K ++LD+ Sbjct: 460 RCDNLDYIITVDIFNEGVDIKEVNQIVMLRETESSIIFIQQLGRGLRKYSNKEFVVVLDF 519 Query: 357 AGNPHDLYAPEVGTPKGKSDN 377 GN + + V + N Sbjct: 520 IGNYKNNFLIPVALSGDTTYN 540 >UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11 Tax=Bacteria RepID=Q167L8_ROSDO Length = 782 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 98/412 (23%), Positives = 157/412 (38%), Gaps = 65/412 (15%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-------------LARG 50 R YQ AV+A L + + ++ L TG GK+ + ++A R Sbjct: 163 QPRYYQAAAVNAVLEALAQDEKRILLTLATGTGKTSIAFQIAWKLFQSRWNLSGAPTRRP 222 Query: 51 RVLVLAHVKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVAR--- 102 R+L LA L Q + + A +A + + + V F Q+ Sbjct: 223 RILFLADRNILADQAYNSFSAFAPDALSRINPKEISKKGKMPRNASVFFTIFQTFMTENK 282 Query: 103 ------NLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR 155 N ++ +F +I+DECHR G +ES ++ IL + LGLTATP R Sbjct: 283 SGEAEFNFREYEPDFFDFIIIDECHRGGAKDESSWRGILEYFAPAVQ----LGLTATPKR 338 Query: 156 LGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERL----DMPVVQYDF 211 V D F + +Y LR I G+LTP + + YD Sbjct: 339 K-------------VNADTYTYFGEPVYTYALREGIDDGFLTPFKVRQMASTIDTYVYDP 385 Query: 212 SRL----QAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 + ++E ++N ++ R I + M+ R+ ++F AT HA Sbjct: 386 EDEVVGGDVDPDHEYTEDEINAKIVIPAR-EQSRIHEFMDQINPRQKTLVFCATQNHAAA 444 Query: 268 IVGLLPA-------EDAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAP 317 + + +T + GA + + F+ L L+TG DA Sbjct: 445 VCDYINQIKDIEDPHYCERVTAN-DGALGEQHLREFQDNERSIPTILTTSQKLSTGVDAR 503 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVG 369 +V I ++RP +S+ ++QIVGRG R GK I D+ PE Sbjct: 504 NVRNIVLMRPIKSMVEFKQIVGRGTRTFEGKDFFTIYDFVKAYEHFNDPEWD 555 >UniRef50_A0Q726 Type I restriction-modification system, subunit R (Restriction) n=25 Tax=Proteobacteria RepID=A0Q726_FRATN Length = 782 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 106/461 (22%), Positives = 176/461 (38%), Gaps = 78/461 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------------RG 50 T R YQ+ AV T++ + ++ L TG GK+ + ++A + Sbjct: 149 TPRYYQKIAVQKTIDAISSGQDRILLTLATGTGKTYIAFQIAYRLLEARWRKNDIGNKKP 208 Query: 51 RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKES-----HGKVVFGSVQSVARNLD 105 R+L LA L+ Q ++ + + L +K G V F Q+VA N + Sbjct: 209 RILYLADRNILIDQAINEFNPIENDCKRIQGKLIKKNGGKVPLSGNVFFAIYQAVAENKN 268 Query: 106 AF-------------------QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL 146 F L+I+DECHR +++S ++ I+ + + Sbjct: 269 RQYLATDSEDDSLTAYYKQYPADFFDLIIIDECHRGSANDDSSWRDIIEYFSSAVH---- 324 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE--RLDM 204 LGLTATP R G Y + F + IYE L+ I G+LTP + R+ Sbjct: 325 LGLTATPKRDVNGDTYDY-------------FGEPIYEYSLKDGINDGFLTPYKVKRITT 371 Query: 205 PVVQYDFSRLQAQS----NGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAA 260 + +Y + + N ++S +D + + QQR I I++ ++F Sbjct: 372 NIDEYRPNTHDSVDGDLPNKVYSISDWEKTITSQQR-HELIAKTILDNINKMDKTIVFCK 430 Query: 261 TVEHAKEIVGLL-------PAEDAALITGDTPGAERDVLIENFKAQRFRY---LVNVAVL 310 HA E+ + + +T + RD +E F+ L + +L Sbjct: 431 NQPHALELKLAIDRFKKVKTPDYCVRVTSEEGQIGRD-YLEQFQDNDKDIPVILTSSKML 489 Query: 311 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGT 370 TTG DA +V I + P ES+ ++QI+GRG R GK ILD+ Y + Sbjct: 490 TTGVDAKNVRNIVLTAPIESMIEFKQIIGRGTRTFEGKDFFTILDFVKASDKFYDKDWDG 549 Query: 371 -----PKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 K+D P + + D +H Sbjct: 550 VADVVTDVKADGKPKEDT-KEIKEIDPIENLKEKDDEPKKH 589 >UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN59_9ACTN Length = 865 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 151/339 (44%), Gaps = 33/339 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAHVK 59 LRPYQ EAV++ + ++ + TG GK++ AE+ + GR L+LAH Sbjct: 1 MELRPYQVEAVESVFREWESGNRRTLLSMATGCGKTICFAEIVKRVAATGGRSLILAHRG 60 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLI 115 EL+ Q K Q GLE+ + A S +V GSVQ++ R L+AF F +I Sbjct: 61 ELLEQAADKIQRTSGLESALEKAESTSLNSWARVTVGSVQTLMRQDRLNAFAPNRFDAII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H + Y +IL H R+LG+TAT R K D Sbjct: 121 VDEAHHTLAEG---YIRILDHFKGA----RVLGVTATADRADKK-------------DLG 160 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 ++ +E + IK GYL P E +M ++ D S + ++G + L L + Sbjct: 161 EVYDSIAFEYGIAQAIKDGYLCPIEA-EMVPLELDVSSVSV-THGDYQAGQLGDAL---E 215 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 I ++ R+ V +F V AK L + D +R+ ++ + Sbjct: 216 PYLDAIADAMVTRCQDRRTV-VFLPLVRTAKAFAEKLNERGLIVCEVDGQSEDREEILSD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 F +++ L N +LT G+D P VD I LRPT+S LY Sbjct: 275 FNRGKYQVLCNSMLLTEGWDCPSVDCIVCLRPTKSRGLY 313 >UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSE4_9CORY Length = 1195 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 119/431 (27%), Positives = 171/431 (39%), Gaps = 88/431 (20%) Query: 6 RPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 R YQ E + F + A++V+ TG GK+ V LA+L RG RVL LA K Sbjct: 420 RDYQLEMIRNVTEAFDSEGRRRALLVMATGTGKTRVAMALAKLLRGAQWVGRVLFLADRK 479 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD-------AFQG-EF 111 LVAQ ++ E L+ + G+V F + Q++ + F+ +F Sbjct: 480 ALVAQACDAFKISYPECAPVNL-LEDADEVGEVYFSTYQTMMGLISDDGTSEAKFRPFDF 538 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DE HR ++++IL + ++GLTATP + Sbjct: 539 DLIIIDEAHR---SIYYRFRRILEYFDS-----YVVGLTATP-------------KADIH 577 Query: 172 GDEKALF----RDCIYELPLRYMIKHGYLTPPERLDMPV-----------------VQYD 210 D ALF R+ L IK GYL PP V +D Sbjct: 578 HDTFALFHIDGREPTGNYSLEAAIKDGYLVPPVPFKQDSLFLRAGVSYDDLSPEQKVAWD 637 Query: 211 FSRLQAQSNGL-------FSEADLNRELKKQQRITPHIISQIMEFAATRKG-----VMIF 258 +G S ++NR L + I ++ ++E G +IF Sbjct: 638 NQDWGTDEDGDALPPPDGVSPGEINRILYNRDTIRK-VVGNLIECGHKVDGDRLGETIIF 696 Query: 259 AATVEHA----KEIVGLLPA---EDAALITGDTPGAERDVLIENFK--AQRFRYLVNVAV 309 A T HA +EI PA + AA+IT T AE I+ FK R ++V + Sbjct: 697 ARTQHHADLILEEINKHFPAFGGDGAAVITHSTRYAE--AAIKRFKKIDGDLRIAISVDM 754 Query: 310 LTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHD 362 L TG D P V + +P S + + Q+VGRG RL P K + I DY GN Sbjct: 755 LDTGIDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLCPNLFGPGRDKENFYIFDYCGNVEM 814 Query: 363 LYAPEVGTPKG 373 V P G Sbjct: 815 FSGKPVTDPAG 825 >UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B1Y673_LEPCP Length = 824 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 104/448 (23%), Positives = 184/448 (41%), Gaps = 91/448 (20%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAHV 58 T R YQ A++ T+ + + A++V+ TG GK+ ++ A+ R+L LA Sbjct: 165 TPRYYQLNAINRTVEAIAQGRQRALLVMATGTGKTYTAFQIIWRLWKSCAKKRILFLADR 224 Query: 59 KELVAQNH-AKYQ-----------------------ALGLEADIFAAGLKRKESHG--KV 92 L+ Q ++ +G+E A K+ ++ Sbjct: 225 NILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGRVGVEDVTLAVNRTTKQVDTSYEI 284 Query: 93 VFGSVQSV------ARNLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 Q+V + F +F L+IVDECHR E+S +++IL++ + Sbjct: 285 YLSLYQAVTGTSDESNIYKQFSPDFFDLIIVDECHRGSAAEDSSWREILSYFSSATQ--- 341 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 +GLTATP + F + IY L+ I+ GYL P + + + Sbjct: 342 -VGLTATPKETQDVSNSDY-------------FGEPIYTYSLKQGIEDGYLAPYKVVRID 387 Query: 206 VVQYDFSRLQAQ----------SNGLFSEADLNRELKKQQR--ITPHIISQIMEFAATRK 253 + + F + + +++ AD+NR L ++R + I++ ++ Sbjct: 388 LDRDTFGWRPTEGMTDKLGNLIEDRVYTGADMNRRLVLERRDEVVAAKITEYLKATDREA 447 Query: 254 GVMIFAATVEHAKEIVGLLPAEDAAL----------ITGDTPGAERDVLIENFKAQRFRY 303 ++F ++HA + L +A + ITGD P +R+ ++NF Y Sbjct: 448 KTIVFCEDIDHAARMRQALSNANADICQTQPRYVVQITGDNPEGKRE--LDNFIDPEKTY 505 Query: 304 LV---NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAG 358 V +++TG DA LI + + +S++L++QI+GRG RL GKT ILD+ Sbjct: 506 PVIATTSKLMSTGVDAQTCKLIVLDQNIKSMTLFKQIIGRGTRLREDLGKTWFTILDFKR 565 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCPA 386 + D PVQV+ P Sbjct: 566 ATELFADKDF-------DGEPVQVYEPK 586 >UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organisms RepID=Q1PKZ5_PROMA Length = 976 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 156/382 (40%), Gaps = 41/382 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q+EA+ N R + A+++ T GK+ + A A+ RVL + H + + Sbjct: 224 QKEALINLENLRRANVKKALLISATATGKTYLSAFDAKNFNAKRVLFIVHRWNIAKKAME 283 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEF-SLLIVDECHRIG 123 ++ G E + + +F + +++ NL+ F +F +I+DE HR G Sbjct: 284 SFEKIFGDERTYGLYKGSINDINFDFIFSTNLTISNSQNLNKFSPDFFDYIIIDETHRAG 343 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 S YQ+I+ + + LLG+TA+P R I++ H + Y Sbjct: 344 ---ASTYQKIINYFSPKF----LLGMTASPERTDGFDIFKLFDH------------NIAY 384 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ + P + + + + +S D N+ + I+ Sbjct: 385 EIRLQKAMEAELVVPFHYFGITDLNINGEIIDEKS-------DFNKLIC--DERVERILD 435 Query: 244 QIMEFAATRKGVM--IFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFK-- 297 ++ + +F + + A E+ + +TG ER+ I+ + Sbjct: 436 ISDKYGCDDNIIRGIVFCSRKDEAYELANKFNLKGRKSITLTGSQSEDERENAIQQLESD 495 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 ++ ++ V + G D P ++ I +LRPT+S ++ Q +GRGLR K ++D Sbjct: 496 NLEEKLEFIFAVDIFNEGIDIPRINQIIMLRPTQSNIIFIQQLGRGLRRFEKKEYLTVID 555 Query: 356 YAGNPHDLYAPEVGTPKGKSDN 377 + GN + + V S N Sbjct: 556 FIGNYQNNFLIPVALFGDTSYN 577 >UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax=Firmicutes RepID=B2A6M4_NATTJ Length = 1082 Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats. Identities = 101/488 (20%), Positives = 169/488 (34%), Gaps = 95/488 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-----RLARGRVLVLAH 57 LR YQ+EA+ A + +I + TG GK+ + L RVL L Sbjct: 371 LGLRYYQEEAIKAIEKGLEEGRQSLLIAMATGTGKTRMAIGLIYRLVKSRRFKRVLFLVD 430 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q ++ LE+ ++ + KV +VQ + R + Sbjct: 431 RNALGKQAENAFKDSKLESFNSFTEIFELQSLKAPNPNPETKVHISTVQGMMRRIYYNDP 490 Query: 110 E--------FSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLR 145 E + ++VDE HR +D S+Y+Q+L + V Sbjct: 491 EKDKPTVDQYDCIVVDEAHRGYTLDSEMEELELYFRDHNDYVSKYRQVLDYFDAV----- 545 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PPERL 202 +GLTATP +F IY R + GYL PP ++ Sbjct: 546 RIGLTATP-----------------ALHTVEIFGSPIYTYSYREAVVDGYLIDHEPPYQI 588 Query: 203 DMPVVQY------------------DFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + + + D + + + N+++ + +I + Sbjct: 589 NTKLKKEGINWQVGEEVDVYDAKSGDIKKEVMEDEVEIDVSQFNKQVITES-FNRTVIKE 647 Query: 245 IMEFAATR--KGVMIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDVLI 293 ++ + +IFAA +HA IV +L E D A++ I Sbjct: 648 LVNYIHPELEGKTLIFAANDDHADTIVRILKEELENKYGPIEDNAVMKITGSLKNPLQAI 707 Query: 294 ENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTD 350 + F+ +R +V V +LTTG D P + + +R S LY+Q++GR R K Sbjct: 708 KLFQNERLPNIVVTVDLLTTGVDVPPICSLVFMRRVRSRILYEQMLGRATRRCDEIDKDH 767 Query: 351 CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRR 410 I D L P K NVPV+ N+ + + R+ Sbjct: 768 FNIFDAVEIYEALKPYTDMKPVVKKPNVPVKQLVNELEQINSTDKQKNHIDQIKAKIQRK 827 Query: 411 CQGWFEDD 418 + W E++ Sbjct: 828 SKHWTEEE 835 >UniRef50_A0YZ56 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YZ56_9CYAN Length = 723 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 164/399 (41%), Gaps = 36/399 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVKEL 61 LRPYQQ D N + ++ PTG+GK+ + +R RVL+L H + L Sbjct: 30 LRPYQQTIKDEVYNQLNQGIHRILVYSPTGSGKTATFCSMIADFLASRHRVLLLMHREFL 89 Query: 62 VAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 + Q + G+ I AG + +QS++R ++I DE Sbjct: 90 IEQTVKTLRRFGVPTEAIGIIKAGYSENRDR-PLQLAGIQSLSRR--QHPQNIDIVIGDE 146 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H I S+Y+++L L + +G TA+P+RL Y F Sbjct: 147 AHTICW--YSEYKKLLNSLN----NSIQIGFTASPWRLKPHKQY-----------FGEWF 189 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++ ++ G+L + D ++L S G F + ++ I Sbjct: 190 DTIVKGPTIQELMSLGFLARVRYFGKGGL-VDLTQLDTDSTGDFKTLQMEQK-FLDAGIC 247 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 + +I+E R GV IF + V+ +K+ LL I TP ER + + Sbjct: 248 EAVRQRILELCLCRTGV-IFNSGVKQSKQQTELLNEAGIFTKHIDAHTPINERRRMFQEL 306 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + R + +V LT GFD + + + R T+S +LY Q+ GRGLR PGK +CL+LD+ Sbjct: 307 EKGEIRCISSVGCLTEGFDCQSIGYVVLARATQSQALYYQVAGRGLRTCPGKENCLLLDF 366 Query: 357 AGNPHDLY----APEVGTPKGKSDNVPVQ-VFCPACGFA 390 GN +P + NV CP CG Sbjct: 367 GGNVKRFGFLTKSPSITLEPTPPPNVKEMLKTCPDCGSE 405 >UniRef50_A6FFB6 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FFB6_9GAMM Length = 555 Score = 261 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 173/400 (43%), Gaps = 41/400 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQ+E V+ +L+ +++ A V TGAGK+ V++ +A RVL+L H+ EL Sbjct: 1 MKLRRYQEEMVEKSLDALLKYQGVAC-VAATGAGKTCVLSYIAAQFN-RVLILQHLDELK 58 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QN + + + D + + FG +Q+V LD + L+I+DECHR+ Sbjct: 59 QQNAETFGWVNPKLDYGFIDPDNNDFNKPYAFGMMQTVVHRLDDM-THYDLIIIDECHRL 117 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G Y++I+ +NP +++ G +AT R + + ++ Sbjct: 118 G---AISYEKIIERARVINPDVKVFGTSATIERRDQKSLSKY-------------LDVVA 161 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 +++ L +I+ GYL PP + V ++A +N E + I+ Sbjct: 162 HQVQLDDLIRQGYLVPPRAFVIKV-----DGVEAAANAKDDEQV--EAVLNTDVTNQRIV 214 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQR 300 ++ E A+TR V F TV HAK++ A ++G ER ++ F+ Sbjct: 215 NEWKERASTRLTV-AFCQTVNHAKDVAQAFNDNGIAATHVSGVMKPRERKKRLKAFERGE 273 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL-----APG--KTDCLI 353 ++ L N +LT G++ P V + ILR + S Q+ GR LR P K D LI Sbjct: 274 YQVLTNATLLTEGWNCPPVSCLLILRGSSSKGALIQMAGRVLRKVNPSDYPNVIKHDALI 333 Query: 354 LDYAGNPHDLYAPEVG-----TPKGKSDNVPVQVFCPACG 388 LD+ + G + + CP CG Sbjct: 334 LDFGVSLIRHGNLNAGDRLTFDKHDYDAEIDAALQCPCCG 373 >UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CWI1_9BACE Length = 1039 Score = 260 bits (665), Expect = 8e-68, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 44/386 (11%) Query: 3 FTLRPYQQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELARL---------ARGRV 52 ++L P+Q++ +D ++V TG GK+++ A + R+ Sbjct: 308 YSLLPHQKQILDKLKVEREECGNFRNLVVAATGTGKTVISAFDYQSFCQQQTGVGRTSRI 367 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGK----VVFGSVQSVARNLDAFQ 108 L AH +E++ Q+ Y+++ +A+ + + + +F S+ +A Sbjct: 368 LFTAHREEILRQSLHTYRSVLQDANFGTLWVGNEAPQTEADYAHLFVSISMFNSRFEALF 427 Query: 109 GE-----FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 + + +++DE H + Y+++ +H +P L L+GLTATP R+ + Sbjct: 428 SQLPADYYDYIVIDEAHH---SQADSYRKLFSHF---HPQL-LIGLTATPERMDGKDL-- 478 Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFS 223 E+ L ++ G LTP + L + + + + Sbjct: 479 ----------RPDFGGRISAEIRLPQALQAGLLTPFQYLCVTDDTD-LTDDSLWNGQRYV 527 Query: 224 EADLNRELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAE--DAAL 279 L +L +R HI+ + + A F +HA + L +A Sbjct: 528 IDRLADKLCVPER-AQHIVDALHRYLADEYTCRALCFCVNKKHADFMALQLQKYGFNAKS 586 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 +T DTP +R L E+ + YL V + G D P VD + LRPT+S++++ Q +G Sbjct: 587 LTSDTPQPQRKQLAEDLRNGLVHYLCVVDIFNEGVDIPEVDTVLFLRPTDSLTIFLQQLG 646 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYA 365 RGLRL+PGKT+ +LD+ H Y Sbjct: 647 RGLRLSPGKTELTVLDFVAQAHKKYD 672 >UniRef50_C1XZ08 DNA/RNA helicase, superfamily II n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ08_9DEIN Length = 524 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 97/366 (26%), Positives = 167/366 (45%), Gaps = 37/366 (10%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 + L QQ+A++ L+ + + ++V+ TG GK+L L+R R R L L H +EL Sbjct: 11 LLPLHRVQQQALEQVLSLYESGHSRQLVVMATGVGKTLWSVHLSRHFR-RTLFLVHFEEL 69 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECH 120 + Q+ A ++ G E + +R + VV G + S+ L+ E F L++VDE H Sbjct: 70 LQQSLAAFRRRGGEPGVI--WGRRTDLEADVVVGMIPSLVHRLERVPPERFDLVVVDEAH 127 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 +++++ H L+GL+ATP+R + +LF Sbjct: 128 HA---RSRTWERVIRHFR----PRLLVGLSATPYRTDGRSLL-------------SLFDT 167 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 + L ++ G+L P+ L++ D + + EA L+ + +R Sbjct: 168 LAFSYRLPEAVRDGFLVEPKILEVST---DQPLSIGRRGADYDEAQLSHAVDTPER-NAL 223 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 ++ + EFA RKGV ++AA V HA+ + L ++ A + +R +E + Sbjct: 224 LVRTVGEFARNRKGV-VYAAGVRHAEHLAALFRSQGIAAESVYGEDPKRREKLERHRRGE 282 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR-LAPG-------KTDCL 352 F+ L N +L +D P ++L + RPT S +LY+Q +GR R L G KTD L Sbjct: 283 FQVLTNAMLLVESYDDPTINLGVMGRPTASPTLYEQALGRPARLLREGRAWDGTPKTDYL 342 Query: 353 ILDYAG 358 +D Sbjct: 343 WIDLMD 348 >UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax=Actinomycetales RepID=A1SJ00_NOCSJ Length = 558 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 106/379 (27%), Positives = 160/379 (42%), Gaps = 41/379 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAH 57 + LRPYQ EA + A++VL TG GK++V E+ R R+LV+AH Sbjct: 137 YELRPYQLEAAERIQQDL-EDTNRALLVLATGLGKTVVGGEVIRRHLESHPDARILVVAH 195 Query: 58 VKELVAQNHAKYQALGLEADI---FAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 +KELV Q L+ + G R S V ++ SV L SL+ Sbjct: 196 MKELVEQLEKAL-WRHLDKSVPTQVLTGDTRPTSFEGVTVATIDSVL-GLVRTDWRPSLI 253 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 ++DE H +G+ + L R G+TATP+R K I Sbjct: 254 MIDETHHVGETG------MFAQLLDECQDARQFGVTATPWRGDKFDIT------------ 295 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK-- 232 + F Y L + + GYL + M V D+ ++ S +S +LN+ L Sbjct: 296 -SRFGQPSYSLGIAEGMADGYLAQVDY-RMYVDNLDWDFVRHASEHGYSIKELNKALFLP 353 Query: 233 -KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED-----AALITGDTPG 286 + + I E R ++F T+EHA+ + LL D A+ + Sbjct: 354 QRDEEIVDEFRQAWREIRDPR--AIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSR 411 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +R +L+ F+ R + V V G D P V+LIA LR T S ++ Q +GRGLRL Sbjct: 412 QQRQILLNAFRLGRVPIITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLRE 471 Query: 347 GKTDCLILDYAGNPHDLYA 365 GK +LD+ + + A Sbjct: 472 GKESLKVLDFVTDVRRVAA 490 >UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZV1_XYLCX Length = 980 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 167/383 (43%), Gaps = 40/383 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q++A++A + A+++ TG GK+++ A R + R+L + H ++++ + Sbjct: 239 QRDALNALAAVRDSGEKRAIVISATGTGKTILSALDVRAVNPRRLLFVVHREQILDRTIQ 298 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 +Y+ + G +D K+ + +F +VQ++A+ L F + F +IVDE HR Sbjct: 299 EYRKVLGGDASDYGKLTGSSKDFAARYLFATVQTLAQPDVLARFPADVFDYVIVDEAHRG 358 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G +++++ H V +LG+TATP R +++ ++ + Sbjct: 359 GS---PTHRRVIGHFDPVF----MLGMTATPERTDGFNVFELFHYNVP------------ 399 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L + LTP + +D + L L QR++ I Sbjct: 400 YEIRLNRALDEDMLTPFHYYGITDATFDDDTTVDALSDL-------DLLVSPQRVSHLIW 452 Query: 243 S-QIMEFAATRKGVMIFAATVEHAKEIVGLLPAE-------DAALITGDTPGAERDVLIE 294 + + A T +IF + + A+ + +L A +TG R+ +E Sbjct: 453 ALETYAQAGTAPRGLIFCSRTQEARRLSDVLNRSLLRGRPLRTASLTGVDSIEHRERTVE 512 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 ++ Y++ V V G D P ++ + +LR T+S ++ Q +GRGLR K ++L Sbjct: 513 QLESGELDYILTVDVFNEGVDIPSINQVIMLRQTQSAIVFVQQLGRGLRKCDQKEYLVVL 572 Query: 355 DYAGNPHDLYAPEVGTPKGKSDN 377 D+ GN + + + S N Sbjct: 573 DFIGNYANNFLIPIALFGDDSLN 595 >UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepID=Q7UED5_RHOBA Length = 1071 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 159/378 (42%), Gaps = 37/378 (9%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAE----LARLA--RGRVL 53 F LRP+ Q+E +D +IV TG GK+++ A +AR A + R+L Sbjct: 350 FDLRPFPFQEEILDIIAAERNVQNKYRHLIVAATGTGKTMIAAFDYARVAREAGRKPRLL 409 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLK-RKESHGKVVFGSVQSV-ARNLD-AFQGE 110 +AH KE+++Q ++ + + + + + + +F S+QS +RNL + Sbjct: 410 FIAHRKEILSQAMVAFRCVLRDQNFGDLLVDGSQPEQHEHLFCSIQSYNSRNLQMESAEQ 469 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F ++VDE H YQ +L H V P + LLGLTATP R + + + Sbjct: 470 FEYVVVDEFHHAA---APSYQSLLEH---VQPQI-LLGLTATPERSDQLDVLSWFG---- 518 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 E+ L I L P + + D L Q G + DL+R Sbjct: 519 --------GRASAEIRLPDAISRRLLCPFQYFGISDA-VDLDGLTWQRGG-YRIDDLDRL 568 Query: 231 LKKQQRITPHIISQIMEFAATRKGVM--IFAATVEHAKEIVGLLPAEDAALI--TGDTPG 286 + ++ E + V F +V HA+ + I + + Sbjct: 569 YTGNDVRAKLVFEKVAETVLDSQDVRGLAFCCSVAHAEFMARFFDENGIPSIALSASSTN 628 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 ER+ + + + ++ V + G D P VD + LRPTES++++ Q +GRGLRL P Sbjct: 629 DERNSAQQRLRERSVNFIFVVDLYNEGIDIPEVDTVLFLRPTESLTVFLQQLGRGLRLHP 688 Query: 347 GKTDCLILDYAGNPHDLY 364 K +LD+ G + Sbjct: 689 EKECLTVLDFIGAQRKEF 706 >UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY57_DESOH Length = 787 Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats. Identities = 103/404 (25%), Positives = 160/404 (39%), Gaps = 38/404 (9%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-------LARGRVLVLAHV 58 RPYQ A+ TL HF A++++ TG GK+ V+ +L L R +L L Sbjct: 155 RPYQDVAIHKTLWHFAGGNNRALLLMATGTGKTFVVFQLVWKLLNTSILKRQHILFLTDR 214 Query: 59 KELVAQNHAKYQALGLEADIFAAGL---KRKESHGKVVFGSVQSVARNLD-------AFQ 108 L Q + + A + + + GKV F + Q++ LD Q Sbjct: 215 NSLKDQAYRAFAAFSTDERVTINKDTVANGQHQVGKVFFANYQNLDEELDGKKIFEHYDQ 274 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 F L+I+DECHR G + + +L H +GLTATP L +G + Sbjct: 275 DFFDLVIIDECHRSGFGD---WFGVLEHFNSALQ----MGLTATPRELEEGR--RVLTEE 325 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 R D F IY L+ I+ GYL P L+ + D ++ A+ Sbjct: 326 EKRRDTYEYFGAPIYTYSLKQAIEDGYLVPY-LLEERITNVDEEGYTGLDGKHYTTANFE 384 Query: 229 RELKKQQR---ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP------AEDAAL 279 R+++ R I + + ++ + ++F HA + L + Sbjct: 385 RDIRMPDRTTAIAEDLWEILGQYDLRDEKSIVFCVDDTHAAFMAAELRRLSGDDDYAGRI 444 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 + + + + + + R V V +LTTGFDAP V I +RP S LY+Q+ G Sbjct: 445 VRSERNSHQLERNFATVGSTKPRVAVTVDLLTTGFDAPDVKNIVFVRPLRSAILYKQMKG 504 Query: 340 RGLRLAP--GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 RG RL K I DY+G A G P + + Sbjct: 505 RGTRLCEDINKRYFTIFDYSGASQLEDAEFDGHPANRQKGAQPK 548 >UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRX7_FIBSS Length = 781 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 103/479 (21%), Positives = 175/479 (36%), Gaps = 83/479 (17%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------------R 51 + R YQ+ AV+ ++ R + ++ L TG GK+ + ++ R Sbjct: 151 SPRYYQEIAVNNVMDAISRKQDRVLLTLATGTGKTYIAFQICWKIFKAHWNVDGTERLPR 210 Query: 52 VLVLAHVKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVARNLD- 105 +L LA L Q + A A K + F Q++ +L+ Sbjct: 211 ILFLADRNILSNQALNDFGQFDENAMCRITPESIAKSKGVPKGPSIYFSIFQTMMTSLNG 270 Query: 106 ------AFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + F L+I+DECHR ++ES+++ IL + + LGLTATP + Sbjct: 271 KFVYENYPEDFFDLVIIDECHRGAANDESRWRDILDYFQRA----YHLGLTATPKKNENA 326 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERL--------DMPVVQYDF 211 Y++ F +Y L+ I+ G+LTP + + D Sbjct: 327 NTYEY-------------FGKPVYVYSLKQGIEDGFLTPYRVRISSSNIDNYIYDPEDDV 373 Query: 212 SRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL 271 + N +++E D K + + + ++ + ++F AT HA + L Sbjct: 374 ESGEIDPNKIYTETDFYHGNIKIRERDEFRVEEFLKQIDPDEKTIVFGATQAHAAILRDL 433 Query: 272 LPAED-------AALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDL 321 + +T D G + + ++ F+ L L+TG DA +V Sbjct: 434 INQHSRKPNVNYCKRVTSD-DGDKGEADLKTFQDNEKLLPTILTTSQKLSTGVDAKNVRN 492 Query: 322 IAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV------GTPKGKS 375 I ++RP ++ ++QI+GRG RL GK I D+ G + PE TP+ + Sbjct: 493 IVLMRPVNNIIEFKQIIGRGTRLFDGKYFFTIYDFVGASKNFSDPEWDGEPIIDTPEPPN 552 Query: 376 DNVP-----------VQVFCPACGFANTFWGKTTADGTLIE------HFGRRCQGWFED 417 P C CG T + IE H R W E Sbjct: 553 GGDPDDDKGSSGGPRKPRPCKICGNLPCTCDAKTKEKRCIEIKLSANHVLRLQAQWQEK 611 >UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6A6_METFA Length = 816 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 90/415 (21%), Positives = 160/415 (38%), Gaps = 64/415 (15%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARG----RVLVLAHV 58 LR YQ+ A+ + + + ++ + TG GK+ ++ +L + RVL L Sbjct: 156 KLRSYQETAIKRVIEAMLKGQKRILLTMATGTGKTFTSFQIVWKLIKSGFISRVLFLTDR 215 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-----QGEFSL 113 L Q + Y+ + F + + ++ F + Q++ D F + F L Sbjct: 216 IFLRDQAYEAYEPF--KGARFKIESGKFNKNRQIYFSTYQTLY--TDNFYKQIPEDFFDL 271 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +I+DECHR ++ +I+ H LG+TATP R +Y++ Sbjct: 272 IIIDECHR---SRYGRWGEIVEHFK----DAYHLGMTATPRREDNIDVYEY--------- 315 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDM--------------PVVQYDFSRLQAQSN 219 F + ++E L I+ GYL P + + + YD Sbjct: 316 ----FGEPVFEYSLAQAIEDGYLVPYKIYKILTNIDIEGLDISQAEEIIYDDEINPENLK 371 Query: 220 GLFSEADLNRELKKQQRITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLLP---- 273 + ++ R + R + IM + +IF EHA+ + + Sbjct: 372 DFYLPSEFERTISLPDRTRKMCEKLLNIMNKTDKKAKTIIFCVDTEHAEIVKNTINQLTN 431 Query: 274 -AEDAALITGDTPGAERDVLIENFKAQRFRYLV---NVAVLTTGFDAPHVDLIAILRPTE 329 A I + +E F+ Y + V +L+TG D P V I +RP Sbjct: 432 NENFAVKIVHEDKND-----LEIFRDSESNYPIVATTVDLLSTGVDIPDVKNIVFMRPIS 486 Query: 330 SVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKG-KSDNVPVQVF 383 S L++QI+GRG RLA K I+D+ + ++ P K + +P + + Sbjct: 487 SRVLFKQIIGRGSRLANNKGFFRIIDFTNATRLIDEWDIPKPPKLKVEEIPEEPY 541 >UniRef50_B2IMB0 Type I restriction-modification system, R subunit n=31 Tax=Bacteria RepID=B2IMB0_STRPS Length = 777 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 182/449 (40%), Gaps = 67/449 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLA 56 + T R YQQ A++ T+ R + + V+ TG GK+ + ++ R RVL LA Sbjct: 166 MKTPRYYQQIAINRTIETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLA 225 Query: 57 HVKELVAQNHAK----YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR------NLDA 106 LV Q A+ ++ + + K + ++ G Q + + Sbjct: 226 DRNILVDQTMAEDFKPFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQK 285 Query: 107 FQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH 165 F + F L+++DE HR E S +++++ + + +G+TATP ++ Sbjct: 286 FDKDFFDLIVIDEAHRGSAKENSNWRKVIDYFSSATQ----IGMTATPKETKNASNTEY- 340 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER----LDMPVVQYDFSRLQAQSNG- 220 F + IY L+ I+ G+L P LD+ V Y + +NG Sbjct: 341 ------------FGEPIYTYSLKQGIEDGFLAPYRVMRVNLDVDVDGYRPETGKVDANGQ 388 Query: 221 -----LFSEADLNRELKKQQR--ITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGLL 272 + D ++ + R +S M+ R ++F ++HA+ + L Sbjct: 389 LIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDYMKQNNARFDKTIVFCVDIDHAERMRAAL 448 Query: 273 PAEDAALITGDT--------PGAERDVLIENF--KAQRFRYLVNVA-VLTTGFDAPHVDL 321 E+ L+ D AE ++NF F +V + +LTTG +A L Sbjct: 449 VKENLDLVQEDYRYVMQVTGDNAEGKAQLDNFMDVNSNFPAIVTTSKLLTTGVNAKTCRL 508 Query: 322 IAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 I + +S++ ++QI+GRG RL P GK I+D+ N +L+A D P Sbjct: 509 IVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFFTIIDF-RNVTNLFAD------SDFDGEP 561 Query: 380 VQVFCPACGFAN-TFWGKTTADGTLIEHF 407 V+V + + G +G +E + Sbjct: 562 VKVLETGAKTVSGSTPGFVDEEGDPVEKY 590 >UniRef50_B1GS37 Putative ATP-dependent helicase n=1 Tax=Salmonella phage Vi II-E1 RepID=B1GS37_9CAUD Length = 644 Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats. Identities = 137/633 (21%), Positives = 236/633 (37%), Gaps = 103/633 (16%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPA---VIVLPTGAGKSLVIAELARLARGRV---LVLA 56 YQ R + +GK+++I+ L + LV++ Sbjct: 25 IEPYDYQWLVYAKCAEVIRNFGKKPEPSYVTASVSSGKTVMISMLCSRFQDMGWDGLVIS 84 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNL----DAFQGEFS 112 E+ QN ++ +++A L RK + ++ G+ ++ L D G+ Sbjct: 85 RQGEIAEQNAEMMWECSVKNSLYSASLGRKSTAYPIICGTEGTIVNALFDKKDESSGDVK 144 Query: 113 ----------LLIVDECHR------IGDDEESQYQQILTHLT-----KVNPHLRLLGLTA 151 + DE H+ I ++ +QY ILT L K + +G T Sbjct: 145 KGGLSDFAPRFCLCDEGHQVPWQDIISENPTTQYGVILTELNRRCKAKHGHEMITIGFTG 204 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER--LDMPVVQY 209 +PFR + + A +++ I + +YM+ G++ P D+ + Y Sbjct: 205 SPFRGTE-------------SMKGAYWKNEIINIDTKYMVDRGFVVPTIFGLHDVDDLHY 251 Query: 210 DFSRLQ---AQSNGLFSEADLN---RELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 D S + F+ L E+ +Q +T I+ ++ME R GV+I A + Sbjct: 252 DLSAFRGSDIDGTQDFTAEQLKQMQEEILEQGTLTQKIMLKVMELTKNRNGVLITCAGKK 311 Query: 264 HAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIA 323 H +E LP A++T D R +++ + +Y +A LTTG + P D Sbjct: 312 HCQEAAKYLPEGSYAIVTEDMGQKARRKALKDAYTGKIKYTFQIAALTTGVNIPLWDTSV 371 Query: 324 ILRPTESVSLYQQIVGRGLRLAP--------GKTDCLILDYAGNPHD---LYAPEV--GT 370 ILR S++L Q++GRG+RL K D L+LD++G + LY + Sbjct: 372 ILRKIMSLTLLVQLLGRGMRLLKKEQIDAGYHKEDHLVLDFSGAMFELGQLYEDPILEEA 431 Query: 371 PKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFR 430 +S QV CP CG N+ + RRC G +D +C+ F Sbjct: 432 EAQRSKRSGEQVPCPKCGTMNS-------------PYARRCIG--KDALSPDGRCEEFFS 476 Query: 431 FKNC-----------PQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGM 479 + C C +ND AR CR CD VL DP+ L + M Sbjct: 477 YIRCGFDKHGIRIFDDGCGTKNDPTARYCRHCDHVLRDPNAALNERAYTDNEWA---DVM 533 Query: 480 SLQHGHDEKGEWLKITYY----DEDGADVSERFRLQTPAQ--RTAFEQLFIRPHTRTPGI 533 + + GE + Y+ D +E F A + F+ + PH + Sbjct: 534 DFKVQLTKDGEGILYRYWINRCDGKEGWANEVFYPYGGATHMKNMFKAKAVFPHLDDKSM 593 Query: 534 PLRWITAADILAQQAL---LRHPDFVVARMKGQ 563 + + + ++ P + R+ + Sbjct: 594 AGKILKCQNAKQFMMYSGLIKAPKRITHRINDK 626 >UniRef50_C5R853 DEAH-family helicase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5R853_WEIPA Length = 445 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 165/396 (41%), Gaps = 54/396 (13%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAH 57 M F+L YQ E +D ++V P G+GK++ +AE+A+ RVL + H Sbjct: 1 MTFSLYDYQLELIDGIYKELTNGHKHVMVVSPAGSGKTVTMAEIAKRTTDKGNRVLFVVH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 E+V Q + G+ D+ G ++++ R D ++ VD Sbjct: 61 RVEIVNQVKNSFTKHGVNMDL-------------ADVGMIKTIERKKDKL-THPDVVFVD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y+++L ++ L TATP RL G ++ GMV G Sbjct: 107 EAHH---SLAATYKRLLAQFD----NVVQLMFTATPVRL-SGEGFRDVADGMVIG----- 153 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 + ++I+H L P E + +D L+ S G ++ ++ ++ I Sbjct: 154 -------KSVSWLIEHKRLAPFEYYAPTL--FDLESLKV-SRGDYTNKSMHEA--SKKVI 201 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 ++ A + ++A VE +K +V AA + G T ER L+ + Sbjct: 202 FGDVVKSYQRIANNTQ-AFVYAVDVESSKAVVQAFNDAGIPAAHVDGKTHKDERAALMNS 260 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + L N + G D P+V+ + LRPT+S+S+Y Q R +R PGK I+D Sbjct: 261 FRDGDIKILSNAELFLEGVDVPNVETVIQLRPTKSLSMYIQFAMRSMRYVPGK-VAKIID 319 Query: 356 YAGNPHDLYAPEVG--------TPKGKSDNVPVQVF 383 + GN P+ T + D +PV F Sbjct: 320 HVGNYAIHGFPDTDHDWSLDGETKQSGFDKLPVPKF 355 >UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CPV8_9FLAO Length = 496 Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats. Identities = 107/474 (22%), Positives = 188/474 (39%), Gaps = 72/474 (15%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVKEL 61 LR YQ++ + R+ + VLPTG GK+ + + RVL+L EL Sbjct: 2 LRSYQKDLISRLRLAIRQGNRRIIAVLPTGGGKTFTFTHIVKGAVDKGRRVLILTDRIEL 61 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVF-GSVQSVARNLDA-----FQGEFSLLI 115 + Q Q GL+ AG RK G V++ V+++AR + F + ++I Sbjct: 62 LRQAGGALQVYGLDPIEIKAG--RKPYLGGVLYTAMVETLARRVKKKDYQHFLQKMQVVI 119 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H + ++ + + R+LG TATP R+G+ +YH + G E Sbjct: 120 IDEAHM------RSFDKLFPYFSA---DARVLGFTATPRRMGRKNQLGEYYHHLEVGVE- 169 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + Y++ +G+L P + + D S ++ G + ++ K + Sbjct: 170 -----------IEYLVDNGFLAEPNYYGV---ESDLSGVRT-VRGEYDANEVADRFSKTK 214 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE--DAALITGDTPGAERDVLI 293 + ++ + + ++FA+ + ++E++ + DA + +R + Sbjct: 215 -LYRGVVENWKRISPG-EKTLVFASNIASSQELITEFTQQGVDARHLDATVSDLDRRNTL 272 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 F L NV +LT GFD P + + + R T+SV LY Q+ GRG R+A GKT I Sbjct: 273 AWFDRTPGAVLCNVGILTKGFDQPDIRTVILYRATKSVPLYLQMCGRGSRMAHGKTSFNI 332 Query: 354 LDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQG 413 LD+ GN FW +E + + Sbjct: 333 LDFGGNIARHG----------------------------FW--HDVRPWSLEVMPMQDRQ 362 Query: 414 WFEDDDGHREQCDFRF--RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAA 465 E + +QC+ CP C E+ + L+DP ++ + A Sbjct: 363 IGEAVLKNCKQCEAFIPTATVICPHCGYEDVKEKEEQQFARLQLLDPRELRRRA 416 >UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria RepID=B9MGJ1_DIAST Length = 827 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 172/449 (38%), Gaps = 87/449 (19%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAHV 58 T R YQ AV+ + + ++V+ TG GK+ ++ A+ R+L LA Sbjct: 164 TPRYYQLNAVNRAVEAIAAGQDRVLLVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADR 223 Query: 59 KELVAQNH----AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF------- 107 L+ Q ++ + A G++R ++ G V V Sbjct: 224 NILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGAVSVEDVDLAVNKTTKLVDKSYEI 283 Query: 108 ----------------------QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 F L++VDECHR E+S ++ ILT+ Sbjct: 284 YLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECHRGSAAEDSAWRDILTYFAGATQ--- 340 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 +GLTATP + F + +Y L+ I+ GYL P + + + Sbjct: 341 -IGLTATPKETKDVSNTDY-------------FGEPVYTYSLKQGIEDGYLAPYKVIRVD 386 Query: 206 VVQYDF----------SRLQAQSNGLFSEADLNRELKKQQR--ITPHIISQIMEFAATRK 253 + + F A + +++ AD+NR+L +QR + I++ ++ Sbjct: 387 LDKDTFGWRPTAGMTDKHGHAIEDRIYTGADMNRKLVLEQRDAVVAAKITEYLKATDRYA 446 Query: 254 GVMIFAATVEHAKEIVGLLPAEDAA--------LITGDTPGAERDVLIENFKAQRFRYLV 305 ++F ++HA + L +A ++ E + ++NF Y V Sbjct: 447 KTIVFCEDIDHAARMRQALSNANADLCATQPKYVVQITGDNIEGKLELDNFIDPEKTYPV 506 Query: 306 ---NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNP 360 +++TG DA LI + + +S++L++QI+GRG RL GKT ILD+ Sbjct: 507 IATTSKLMSTGVDAQTCKLIVLDQTIKSMTLFKQIIGRGTRLREDLGKTWFTILDFKRAT 566 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGF 389 + D PVQ++ P G Sbjct: 567 ELFADKDF-------DGEPVQIYEPGSGQ 588 >UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YWD0_9CYAN Length = 571 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 163/386 (42%), Gaps = 34/386 (8%) Query: 20 FRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVKELVAQNHAKYQALGLEA 76 + + V P GK++V + + A +VL++ + L+ Q L+A Sbjct: 54 IQNGYKRVLFVAPCAYGKTIVFSSITYDAIQKNCKVLIVVPFQALIQQVLKSLALFDLKA 113 Query: 77 DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQ--QIL 134 + A G K + Q++ R + L+I+DECH++ + ++ + ++ Sbjct: 114 GVIAGGWKEDR-QPNIQVAMRQTLERGHRESWFDPDLVIIDECHQVMWSKWAKKRCPRLN 172 Query: 135 THLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHG 194 + + L+G TA+P+RL K R + +F I +I++G Sbjct: 173 KNPDSLTYSPLLIGFTASPWRLSK------------RENFGHIFEVQIASQSPASLIENG 220 Query: 195 YLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG 254 YL P + +++ G F+ +L + + R Sbjct: 221 YLVPTVYYGIAGADLKGVKIR---QGDFAIGELELRCNAP-AVVKATVDNYERLCPQR-L 275 Query: 255 VMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTT 312 +++A V+HA+ + +AL+T T ER + ++F + L+NV V +T Sbjct: 276 TLVYAVGVKHAQSLFQEFTNRGHTSALVTAKTSDEERLQIFDSFSQGDVKILINVGVCST 335 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDL------- 363 GFD P V I + RPT+S +LY Q++GRG+RL P GK+DCLILD GN Sbjct: 336 GFDRPEVSCIILARPTQSKALYVQMIGRGMRLCPQQGKSDCLILDQGGNIQRHGSVEEIE 395 Query: 364 YAPEVGTPKGKSDNVPVQVFCPACGF 389 Y P ++ P CP CG Sbjct: 396 YEPLTELELSQNRGEPAVKTCPECGH 421 >UniRef50_C3X1S4 Helicase n=2 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1S4_OXAFO Length = 496 Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 169/428 (39%), Gaps = 73/428 (17%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAHVK 59 LRPYQ +A++ + R ++ PTGAGK+L+ A L + R R + + Sbjct: 4 IELRPYQLDAIERLRDGVRGGFKNQILCAPTGAGKTLIGASLIQECRNKGKRAVFVCDRI 63 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 L+ Q ++ G++ + R + + S Q++AR + L+I+DEC Sbjct: 64 NLIDQTSLRFDEYGIDHGVIQGNHWRTRLYEPIQIASAQTLARRQW---PDADLIIIDEC 120 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H I + + N + ++GLTATPF G G L+ Sbjct: 121 HTISETVKK---------RISNRNSNVVGLTATPFTKGLG----------------KLYD 155 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + + + +I G+L+ + R+ A G + E + ++ + + Sbjct: 156 NLVNVTSTQALIDEGFLSGYRIYACKEPDMEGVRVVA---GEWEEKETSK---RALEVVG 209 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 + + +E +K + HA+E+ A A T T ER ++E F+ Sbjct: 210 DCVKEYLEHCNGKKFICA-GVNTAHAEELQRQFMAAGILCANYTYKTSDEERREIVEEFR 268 Query: 298 AQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTE-SVSLYQQIVGRGLRLAPGKTDCLIL 354 +R L+ V T GFD P V+ I + RP S++ + Q+ GRGLR+ P K +C++L Sbjct: 269 KPESVYRGLITVTAATKGFDVPDVECIIMARPLRNSLAEHIQLFGRGLRIHPDKKECIVL 328 Query: 355 DYAGNPHDLYAP------------EVGTPKGKSDNVPVQV------------------FC 384 D++GN + G K + P + FC Sbjct: 329 DHSGNCLRFMDEMQGFFQSGATELDDGKQKTRKKKNPEDIEDKYMTCPTCKALHAASPFC 388 Query: 385 PACGFANT 392 P CG Sbjct: 389 PNCGHEYP 396 >UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=B8CZR6_HALOH Length = 770 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 96/445 (21%), Positives = 166/445 (37%), Gaps = 60/445 (13%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 T R YQ+ A++ + + + ++V+ TG GK+ ++ + R+L LA Sbjct: 159 TPRYYQRVAINRAVEAIAKGQKRILLVMATGTGKTFTAFQIIHRLWKAGKKKRILFLADR 218 Query: 59 KELVAQNH-AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV------ARNLDAFQGE- 110 LV Q + G + G ++ QS+ + + + + Sbjct: 219 NILVDQTITGDFSPFGDKMIKIQRGNVSHA--HEIYLALYQSMTGPEEWQKTFEEYSPDF 276 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+++DECHR S ++ +L + + LGLTATP Sbjct: 277 FDLVVIDECHRGSARANSAWRVVLEYFDQATH----LGLTATP-------------KEDA 319 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM----------PVVQYDFSRLQAQSNG 220 + F + IY L+ I+ G+L P + + M P+ + + Sbjct: 320 DVSTQGYFGEPIYTYSLKQGIEDGFLAPYKVVRMGLDKDLMGFRPIKGQTDKYGRVMEDR 379 Query: 221 LFSEADLNRELKKQQR---ITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGLLPAED 276 + D +REL ++R + I + E R ++F +EHA+ + L E+ Sbjct: 380 EYYVNDFDRELILEKRHELVAKEITRYLKEELQDRFAKTIVFCQDIEHAENMRQALVNEN 439 Query: 277 AALITGDTPGAER--------DVLIENFKAQRFRYLV---NVAVLTTGFDAPHVDLIAIL 325 A L+ + R + ++NF Y V ++TTG DA LI + Sbjct: 440 ADLVKQNYKYVMRITGDNPEAKIQLDNFIEPSETYPVIATTSKLMTTGVDAQTCKLIVLD 499 Query: 326 RPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEV-GTPKGKSDNVPVQV 382 S+S ++QI+GRG RL P GK ILD+ G P+ G P ++ Sbjct: 500 MTINSMSEFKQIIGRGTRLRPDYGKYYFTILDFRGATRLFADPDFDGYPIPDDEDGDNYP 559 Query: 383 FCPACGFANTFWGKTTADGTLIEHF 407 G D + Sbjct: 560 GNDVNGGNRIPGNDEGGDEEGRVKY 584 >UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax=Bacillales RepID=C6CZ63_PAESJ Length = 1083 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 102/488 (20%), Positives = 174/488 (35%), Gaps = 94/488 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-ELARLAR----GRVLVLAH 57 LRPYQ++A+ + + ++ + TG GK+ + + RL + R+L L Sbjct: 371 LKLRPYQEDAILSVEGAIDEGQRSILLAMATGTGKTRMAIGLIYRLIKHNRFKRILFLVD 430 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q A ++ LE+ ++ K+ KV +VQ + + + + Sbjct: 431 RSALGRQAEAAFKDSKLESYHSFTEIFELQTLDDKKPNPETKVQIATVQGMVKRIFYNES 490 Query: 110 E---------FSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHL 144 + + +IVDE HR +D S+Y+++L + Sbjct: 491 DEAEIPSVDQYDCVIVDEAHRGYTLDKEMSELELEFRDHEDYVSKYRKVLDYFDAF---- 546 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE---- 200 +GLTATP +F ++ R + GYL E Sbjct: 547 -RIGLTATP-----------------ALHTVEIFGRPVFNYSYREAVIDGYLIDHEPPMQ 588 Query: 201 ------------RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH----IISQ 244 ++ V YD S + L E +L + IT + I+ + Sbjct: 589 FETQLKKHGIKWQVGEEVAVYDISSGNVEKELLQDEINLEVTQFNKTVITENFNRVILEE 648 Query: 245 IMEFAA--TRKGVMIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDVLI 293 + ++ + +IFAAT +HA +V + E D A++ + I Sbjct: 649 LTKYIDPESEGKTLIFAATDDHADMVVRIFKEELEKAYGAVDDNAVLKITGSIKDPLHTI 708 Query: 294 ENFKAQRFR-YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTD 350 + FK +R +V V +LTTG D P + + LR S LY+Q++GR R GK Sbjct: 709 KLFKNERLPSIVVTVDLLTTGIDIPSITNLVFLRRVRSRILYEQMLGRATRRCDEIGKDH 768 Query: 351 CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRR 410 +I D G L P V + V +I R+ Sbjct: 769 FMIYDAVGIYETLKPYTDMKPVVTKPTVSLDVLTSELAQLEDEGQGKPHKDQIIAKMQRK 828 Query: 411 CQGWFEDD 418 + W + D Sbjct: 829 KRTWTQKD 836 >UniRef50_Q7MPU7 Type I site-specific restriction-modification system, R (Restriction) subunit n=11 Tax=cellular organisms RepID=Q7MPU7_VIBVY Length = 817 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 161/424 (37%), Gaps = 68/424 (16%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------------RLARG 50 ++ R YQQ A++ + + K ++I + TG GK++V +++ + Sbjct: 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKP 236 Query: 51 RVLVLAHVKELVAQNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN------ 103 R+L LA LV K + G G + ++ F QS+A + Sbjct: 237 RILFLADRNVLVDDPKDKTFTPFGDARHKIEGG--KVVKSREIYFAIYQSIASDERRPGL 294 Query: 104 LDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY 162 F +F L+I+DECHR + S +++IL + +G+TATP R Y Sbjct: 295 YKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQ----IGMTATPLREDNRDTY 350 Query: 163 QFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS---- 218 ++ F + IY LR I G+L P R+ + + D + + Sbjct: 351 RY-------------FGNPIYTYSLRQGIDDGFLAPY-RVHRVISEVDAAGWRPSKGDVD 396 Query: 219 -------NGLFSEADLNRELKKQQRITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIV 269 +G + D R + + R ++ M+ ++F EHA E+ Sbjct: 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMR 456 Query: 270 GLLPAEDAALITGDTPGAER------------DVLIENFKAQRFRYLVNVAVLTTGFDAP 317 L ++ L R + + L +LTTG DAP Sbjct: 457 RALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGN-PHDLYAPEVGTPKGK 374 + + R S+S ++QIVGRG RL GK I+DY G+ + P+ Sbjct: 517 TCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSATQNFADPDFDGYPEI 576 Query: 375 SDNV 378 D V Sbjct: 577 EDEV 580 >UniRef50_B5FA21 Type I restriction-modification system, R subunit n=8 Tax=Bacteria RepID=B5FA21_VIBFM Length = 816 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 98/429 (22%), Positives = 161/429 (37%), Gaps = 78/429 (18%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------------------RL 47 R YQ+ A++A L+ + ++ L TG GK+ + ++A Sbjct: 160 RYYQENAINAALDAVAKGAPKILLTLATGTGKTSIAFQIAWKLFNSKWSVKAQKKPELAK 219 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKRKE----SHGKVVFGSVQSVAR 102 R R+L LA L Q + G +A I + RK +G V F Q+ Sbjct: 220 RRPRILFLADRNILANQAFNDFSPFGDDAIIRISPDEVRKNGGVPKNGSVFFTIFQTFMS 279 Query: 103 NLDAFQGE-----------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 D+ + F +I+DECHR G +ES ++ IL + + LGLTA Sbjct: 280 GKDSEGNDAPYFGSYSPDFFDFIIIDECHRGGAHDESSWRGILEYFSSAVQ----LGLTA 335 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDF 211 TP RL Y++ F +Y L+ I G+LTP + + + Sbjct: 336 TPKRLDNANTYKY-------------FGKPVYSYDLKSGINDGFLTPFKVYTIVGTLDKY 382 Query: 212 S---------RLQAQSNGLFSEADLN--RELKKQQRITPHIISQIMEFAATRKGVMIFAA 260 + R + + ++ E D N R + R + M+ + ++F Sbjct: 383 TYLPGDGVVVRGKVEPGRVYEEKDFNHNRGISIPAR-EEKRVHYWMDRINPNEKTIVFCM 441 Query: 261 TVEHAKEIVGLLPA-----------EDAALITGDTPGAERDVLIENFKAQR---FRYLVN 306 T EHA E+ L+ IT D + + +E F + Sbjct: 442 TQEHAGEVRDLINQYAQKKGGSDNLNYCVRITADDGKS-GEADLELFSDNEKTIPTIVTT 500 Query: 307 VAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAP 366 L+TG DA +V I ++RP + ++QI+GRG RL K + D+ H+ P Sbjct: 501 SRKLSTGVDARNVRNIVLMRPCTDMIEFKQIIGRGTRLYDKKDFFSVFDFVQAHHNFSDP 560 Query: 367 EVGTPKGKS 375 + Sbjct: 561 DWDGEPEDG 569 >UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027W9_SOLUE Length = 570 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 165/385 (42%), Gaps = 43/385 (11%) Query: 4 TLRPYQQEAVDATLN-HFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAH 57 LR YQ+ A+ + L + A++V+ TG GK+ V AE R R R LVLAH Sbjct: 139 QLRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYRRMRETHPTLRALVLAH 198 Query: 58 VKELVAQNHAKYQALGLEADIFAA--GLKRKESHGKVVFGSVQSVARNLD---AFQGEFS 112 +LV Q + +++I G + + + F + SVA L Sbjct: 199 TNDLVYQLERAFWPCLDKSEITGVWNGYEVPDPEASLTFACIDSVASKLQVSGRLDLGVD 258 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTK-VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDECH G DE Y+ +L L L+G+TATP+R I+ Sbjct: 259 LVIVDECHHAGSDE---YRVVLEALRCGSQDGPFLIGMTATPWRPDGTSIH--------- 306 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 +LF + + + + +K G+L+ + M V ++ L + + LNR + Sbjct: 307 ----SLFGEPVSCVDIVQGLKMGWLSNVDY-RMHVDNINWQELNRVHH--LTPRGLNRTI 359 Query: 232 KKQQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPG 286 Q+ ++ ++ E + ++F ++HA + + A + +PG Sbjct: 360 FIQE-WDDAVVQKLKETWYEIPHARAIVFCGNIDHAITMRDRVNGVGFARAEALYAGSPG 418 Query: 287 A------ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 A +R ++ +F L V +L G D P V++ R T S ++ Q +GR Sbjct: 419 APRLSHAQRSKILADFHDGHAGVLCAVDLLNEGIDLPDVNICVFQRVTHSRRIFVQQLGR 478 Query: 341 GLRLAPGKTDCLILDYAGNPHDLYA 365 GLRLA GK ++LD+ + A Sbjct: 479 GLRLASGKDRVIVLDFVSDVRRFAA 503 >UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=Chroococcales RepID=B0JHV9_MICAN Length = 1148 Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats. Identities = 95/428 (22%), Positives = 155/428 (36%), Gaps = 74/428 (17%) Query: 6 RPYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 RPYQ+EA+ F +++V+ TG GK+ L L + RVL LA Sbjct: 353 RPYQKEAIRRITETFEEKCARKSLLVMATGTGKTRTAIALVELLKSANWVNRVLFLADRN 412 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE--------F 111 L+ Q + +Q + + + V+F + Q++ +D E F Sbjct: 413 ALLKQAYRAFQRHLPSVTVLHLTRSKDVTGANVLFSTYQTMLNAIDRMDAEGRIFGVGYF 472 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR +Y +I + + L+GLTATP Y+ Sbjct: 473 DLVIVDEAHR---SIYQKYGEIFDYFDAL-----LVGLTATPRSEIDRDTYRIFQLPQ-- 522 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV----VQYDFSRLQAQSNGLFSEA-- 225 + L ++ G+L PP+ + +P +S L Q + E Sbjct: 523 -------GVPTFAYELNDAVRDGHLVPPKGVTVPFKFLRTGVKYSELTPQERLDYEEKFR 575 Query: 226 ---------DLNRELKKQQRITPHIISQIMEFAATRK----------GVMIFAATVEHAK 266 +N + Q +E R +IFA HA+ Sbjct: 576 DEESGELPQAINAAAFNDWLFNIDTVDQALELLMQRGLKVNSGDRLGKTIIFARNHRHAQ 635 Query: 267 EIVGLLP-------AEDAALITGDTPGAERDVLIENF-KAQRFRYL-VNVAVLTTGFDAP 317 I A +I A+ L+++F +A + L V+V +L TG D P Sbjct: 636 CICDRFNSNYPHYKGHFAKIIDSHDNYAQ--SLLDDFSEANKEPILAVSVDMLDTGVDVP 693 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGT 370 V + +P S + Q++GRG RL KT+ L+ D GN T Sbjct: 694 EVVNLVFFKPVFSRVKFNQMIGRGTRLCQDLFGTGNHKTEFLVFDLCGNFEYFEQDIDET 753 Query: 371 PKGKSDNV 378 + +++ Sbjct: 754 SQKIPESL 761 >UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=Corynebacterium RepID=C2CT05_CORST Length = 1212 Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats. Identities = 109/437 (24%), Positives = 169/437 (38%), Gaps = 85/437 (19%) Query: 6 RPYQQEAVDATLNHFRRHKTP-AVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQ EA+ A + A++V+ TG GK+ V ARL R G+VL LA Sbjct: 430 RTYQLEAIRAVTETLEARRRRQALLVMATGTGKTRVAVATARLLRQAGWVGKVLFLADRT 489 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG--------EF 111 LV Q H + ++ E+ +K E G V + ++ + +F Sbjct: 490 ALVNQAHKAFVSMYAESTPVNL-IKNPEQVGDVYVTTYNTMMNLIGDDGDTPAKFGPFDF 548 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR +++++IL + ++GLTATP K I Y Sbjct: 549 DLIIVDEAHR---SVYNRFKRILEYFDA-----YVVGLTATP----KSEIDHDTYALFEM 596 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERL------------------------DMPVV 207 D+ F E L + G L P + D Sbjct: 597 EDKTPSF-----EYSLDEAVADGNLVPFKTARQDSLFLRRGMSYDELSPEEQLAWDTSDW 651 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRK-----GVMIFAATV 262 D + G S A++NR L + I ++ ++E +IFA T Sbjct: 652 GTDEDGGRLDPPGQVSSAEINRYLFNKDTIRK-VLKTVVENGIRVGGDQLGKTIIFARTQ 710 Query: 263 EHAKEIVGLLPAE-------DAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVLTTG 313 HA+ I + A A++IT T A+ +++F ++V +L TG Sbjct: 711 RHAELIKQVFDATFPEYSRTGASVITTHTKYAQ--SALDDFADPDGDVNIAISVDMLDTG 768 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAP 366 D P V + +P S + + Q+VGRG RL P KT LI D+ GN + + Sbjct: 769 VDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLRPDLFGPGMDKTHFLIFDFCGNVDEFFKG 828 Query: 367 E-----VGTPKGKSDNV 378 E G P+ S+ + Sbjct: 829 EARESATGRPRSLSEKL 845 >UniRef50_Q6NDX2 Helicase C-terminal domain n=1 Tax=Leptospira phage LE1 RepID=Q6NDX2_9CAUD Length = 501 Score = 254 bits (648), Expect = 9e-66, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 170/374 (45%), Gaps = 34/374 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVK 59 + L+ YQ +AV + K P +I++ TG GK++V + + + ++L LAH + Sbjct: 15 YKLKSYQSKAVGNAVRLLEEGKNP-LIIMATGTGKTVVGSSIIKERISRGKKILWLAHRE 73 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR-NLDAFQGEF--SLLIV 116 EL+ Q ++ + R + V+ GSV ++ + LD+ +F +I+ Sbjct: 74 ELIDQAKSQIDNICQINSGLERAEHRADLTENVIVGSVPTLRKSRLDSRFSDFRIDDIII 133 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DECH D YQ I+ ++GLTATP G G K+ Sbjct: 134 DECHHATAD---SYQTIIEFFQSRF-RSNVVGLTATP-------------DGAKGGGLKS 176 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 +F D Y L IK G L + + D S ++ + G + L+ + + Sbjct: 177 IFSDIAYNYSLLEAIKDGNLCNLIGVKV-DCDIDLSGIRTVA-GDLDQGALDDVMSSK-- 232 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 +I +++ R+ + +F +V A + +L A ++ ++ ER I Sbjct: 233 -ILNIAEGVLKETIGRRTI-VFTVSVRMAVMLEAILKENGIKAKALSAESSVEERRYAIS 290 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 F+ +L+N A+ T GFD P ++ + I PT+S + Y Q+VGRG RL+PGK+ CL++ Sbjct: 291 QFRRGEITHLLNCALFTEGFDCPEIEAVVIACPTKSRTKYSQMVGRGTRLSPGKSHCLLV 350 Query: 355 DYA--GNPHDLYAP 366 ++ N H L P Sbjct: 351 EFGYQANQHQLVKP 364 >UniRef50_B9KN75 ABC-type metal ion transport system ATPase component-like protein n=1 Tax=Rhodobacter sphaeroides KD131 RepID=B9KN75_RHOSK Length = 471 Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats. Identities = 110/426 (25%), Positives = 175/426 (41%), Gaps = 64/426 (15%) Query: 16 TLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARG-RVLVLAHVKELVAQNHAKYQAL 72 + V PTG GK+LV A++ LA+G R + A L+ Q ++ Sbjct: 2 IRASLAKGNRRVVCQGPTGFGKTLVAAKIIEGALAKGNRAVFAAPAISLIDQTVTAFENE 61 Query: 73 GL-EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQ 131 G+ + + A R + KV SVQ++AR SL+IVDECH D Sbjct: 62 GIRDIGVMQANHPRTDRLAKVQVASVQTLARRE---IPPASLVIVDECHLGFD------- 111 Query: 132 QILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMI 191 ++ L P +GL+ATP+ G G ++D + + + +I Sbjct: 112 -VIHRLMDERPDAFFIGLSATPWAKGMG----------------VRWQDLVIPVTIGELI 154 Query: 192 KHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAAT 251 + G+L+ V D ++ Q+ G + EA L + ++ ++++ + Sbjct: 155 EGGWLSQFVVYAPDVP--DLRGVKVQA-GDYVEAQLADVM-GDAKLVGNVVATWLARGED 210 Query: 252 RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAV 309 R + FA HA ++ + AA + G+T ER L F+ R + +V Sbjct: 211 RPTLC-FAVNRAHAAQLQAQFERQGVAAAYVDGETDAIERQRLNRLFRDGSVRVICSVRT 269 Query: 310 LTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY----- 364 +TTG D P V + PT+S L+ Q +GRGLR+ PG DCLILD+AGN L Sbjct: 270 MTTGIDLP-VSCVIDAAPTKSEMLHVQKIGRGLRVNPGTEDCLILDHAGNSLRLGLVTDI 328 Query: 365 -------------------APEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTA-DGTLI 404 A ++ P + + CP CG A DG L+ Sbjct: 329 HHDRLDATEKGAKQEHKPKAEKLPKPCSQCGVLHAGKVCPGCGHERRPVANVEAKDGELV 388 Query: 405 EHFGRR 410 E G++ Sbjct: 389 EVAGKK 394 >UniRef50_Q0AZK4 Type I restriction-modification system R subunit (Endonuclease) n=4 Tax=Firmicutes RepID=Q0AZK4_SYNWW Length = 1115 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 91/434 (20%), Positives = 159/434 (36%), Gaps = 75/434 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARG----RVLVLAHVKE 60 R YQ+EA+ A + +++V+ TG GK+ + L L+RG L LA Sbjct: 344 RYYQKEAIRAVCENIETGHRKSLLVMATGTGKTRTASSLTDVLSRGGYITNTLFLADRTA 403 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---------- 110 LV Q ++ + + + +++ ++VF + ++ +D+ + E Sbjct: 404 LVRQAKNDFKTNLPDMSLCNLLINKEDKTARIVFSTYPTMLNAIDSAKNENGQRLFTPAH 463 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+IVDE HR +Y+ I + + L+GLTATP + Y F Sbjct: 464 FDLIIVDEAHR---SIFKKYRAIFEYFDSM-----LIGLTATPKQEVDRNTYDFFEMES- 514 Query: 171 RGDEKALFRDCIYELPLRYMIK-HGYLTPPERLDMPV------VQYD--FSRLQAQSNGL 221 Y + L P +++ + YD +A+ Sbjct: 515 --------GVPTYAYAYETAVDKDHVLVPYHNIEVRTRFLEEGITYDELSEEDKARYEED 566 Query: 222 FSEADLN----------RELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHA 265 F++ D E Q ++ +M +IFA +HA Sbjct: 567 FTDEDGEMPDFIPSPAVNEFIFNQCTVDMVLEDLMTKGIKVAGGDRLGKTIIFAQNKKHA 626 Query: 266 KEIVGLLP-------AEDAALITGDTPGAERDVLIENFK--AQRFRYLVNVAVLTTGFDA 316 + IV A + D + +I++FK + V+V +L TG D Sbjct: 627 EYIVERFNKLYPQYHGSFAKRVVCDDNYVQ--TIIDDFKIAEKEPHIAVSVDMLDTGIDV 684 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVG 369 P + + + S + Q++GRG RL KT LI DY GN + G Sbjct: 685 PELVNLVFFKRIRSKIKFWQMIGRGTRLCKNLFGDGQDKTHFLIFDYLGNFEFFRTNKDG 744 Query: 370 TPKGKSDNVPVQVF 383 ++ ++ +F Sbjct: 745 VKGNETQSISEAIF 758 >UniRef50_P24125 51.5 kDa protein n=5 Tax=root RepID=V51K_BPL79 Length = 452 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 110/484 (22%), Positives = 193/484 (39%), Gaps = 67/484 (13%) Query: 28 VIVLPTGAGKSLVIAELARLA---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLK 84 +I P G+GKS+VI+E+ +LA GRVL L H KEL+ Q ++ G+ + Sbjct: 1 MIQSPPGSGKSVVISEITKLATEKGGRVLFLVHRKELIDQITNSFKVHGVPLN------- 53 Query: 85 RKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHL 144 +V +V L + + +L+I DE H + + YQ+I + Sbjct: 54 ------QVELLTVGKAKNRLSVLR-KPTLIITDEGHH---GKAATYQKIYE----FYADV 99 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM 204 LG TATP+R+ G ++ Y M+ G + ++I + L P + + Sbjct: 100 PRLGFTATPWRM-SGDGFKDTYDYMIEG------------KTVEWLINNKRLAPYQYYSL 146 Query: 205 PVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEH 264 P D S+L+ + NG +S ++ L K I ++ + ++ A +K + ++A +VE Sbjct: 147 P--SIDISKLRIK-NGDYSNQSIDDALGK--TIFGDVVQEYVKHANGQKAI-LYAHSVEA 200 Query: 265 AKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLI 322 ++ A + TP ERD L+ +F+ R + L NV +++ GFD P + Sbjct: 201 SQSFAKEFQEAGIKAVHVDAKTPKNERDKLMLDFRNGRIKVLCNVDLISEGFDVPDCTVT 260 Query: 323 AILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV----------GTPK 372 + RPT+S+ L+ Q R +R KT +I+D N H P+ G K Sbjct: 261 ILCRPTKSLVLFLQQSMRSMRYQHRKT-AIIIDNVMNWHAHGLPDTHHDWKDYFEGGWKK 319 Query: 373 GKSDNVPVQVFCPACGFANTFWGKT----TADGTLIEHFGR-RCQGWFEDDDGHREQCDF 427 N+ CP C K D ++ E + R + E + + Sbjct: 320 KGQKNIVQAKQCPDCSAMWPLSQKMCNLCGHDFSIEEKHEKLRLEAELELIEKEKV---- 375 Query: 428 RFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDE 487 + K + +D+ V+ + L L + + Sbjct: 376 --KLKILSEKKFGSDLKKNWEIAQARAKVNKGNPLMKLLYFYAKSDWASASIEEIAEVTG 433 Query: 488 KGEW 491 K + Sbjct: 434 KSNY 437 >UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0SUQ0_ACILW Length = 1147 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 98/433 (22%), Positives = 164/433 (37%), Gaps = 76/433 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 R YQ A+ A L F+R + ++++ TG GK+ L + +VL LA Sbjct: 375 RYYQTRAIKAMLAAFQRKERAGLLIMATGTGKTRTAIALVDVLMKANVVQKVLFLADRTS 434 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---------F 111 LV Q ++A L ++ K +G+V + Q++ +D + F Sbjct: 435 LVVQATNAFKA-NLPDSAPVNLVESKTQNGRVYLSTYQTMMGLIDEMNADGTRKYGTGMF 493 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR ++ +I + + L+GLTATP + + G+ Sbjct: 494 DLIIVDEAHR---SVYQKFGEIFKYFDSL-----LVGLTATP--RDEVDRDTYALFGLES 543 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV------VQYD---------FSRLQA 216 G L I GYL PP+ +P+ V+YD + L Sbjct: 544 GVPTDY-------YDLNQAIADGYLVPPKAYSVPLKFMREGVKYDELSEEEKLHWDELDW 596 Query: 217 QSNG---LFSEADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKE 267 + + +N+EL + + +ME + +IFA HA Sbjct: 597 DGGDAPDEVTASKINKELFNTGTVDKM-LQHLMENGIKVEGGDMLGKTIIFAVNQNHANF 655 Query: 268 IVGLLP-------AEDAALITGDTPGAERDVLIENFKAQRF---RYLVNVAVLTTGFDAP 317 I + A +IT T A+ LI++F + + ++V +L TG D P Sbjct: 656 IAERFDKNYPHYDGKFARVITHSTKYAQ--SLIDSFSKKDLADPQIAISVDMLDTGIDVP 713 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPEVGT 370 V + + S + Q++GRG RL K + I DY N G Sbjct: 714 EVVNLVFFKAVRSKVKFTQMIGRGTRLCKDLFAPEMDKKEFYIFDYCSNFEYFNENPDGA 773 Query: 371 PKGKSDNVPVQVF 383 P ++ + ++F Sbjct: 774 PISTTEPLGQRLF 786 >UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 Tax=Bacteria RepID=T1RE_ECOLX Length = 813 Score = 252 bits (643), Expect = 4e-65, Method: Composition-based stats. Identities = 91/437 (20%), Positives = 166/437 (37%), Gaps = 62/437 (14%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVKE 60 R YQ +A++ T++ K ++V+ TG GK+ ++ + R+L LA Sbjct: 169 RYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKAKNKKRILFLADRNI 228 Query: 61 LVAQNH-AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV------ARNLDAFQGE-FS 112 LV Q +Q G + + + +V Q++ + + F Sbjct: 229 LVDQTKRNDFQPFG--NAMTKVTGRTIDPAYEVHLALYQAITGPEEHQKAYKQVAPDFFD 286 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+++DECHR E+S +++IL + +GLTATP + Sbjct: 287 LIVIDECHRGSASEDSAWREILEYFGSATQ----VGLTATPKETEDVSNIDY-------- 334 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLD----------MPVVQYDFSRLQAQSNGLF 222 F + +Y L+ I+ G+L P + + PV + + ++ Sbjct: 335 -----FGEPVYTYSLKEGIEDGFLAPYKVVRVDIDVDVQGWRPVKGQLDKYGEEIEDRIY 389 Query: 223 SEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL-------- 272 + D +R L +R + I+ ++ ++F ++HA + L Sbjct: 390 NLKDFDRTLVIDERTMLVAQTITDYLKRTNPMDKTIVFCNDIDHADRMRHALVVLNPEQV 449 Query: 273 --PAEDAALITGDTPGAERDVLIENFKAQRFRYLV---NVAVLTTGFDAPHVDLIAILRP 327 + ITGD ++NF + Y V ++TTG DA L+ + + Sbjct: 450 LKNEKYVMKITGDDDIG--KAQLDNFINPKKAYPVIATTSELMTTGVDAQTCKLVVLDQN 507 Query: 328 TESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEV-GTPKGKSDNVPVQVFC 384 +S++ ++QI+GRG R+ GK ILD+ P G P+ P + Sbjct: 508 IQSMTKFKQIIGRGTRINEKHGKLWFTILDFKKATELFADPRFDGLPEKVLVVKPGDISD 567 Query: 385 PACGFANTFWGKTTADG 401 F + ADG Sbjct: 568 KDSDFNEQLDAENNADG 584 >UniRef50_Q8EUU6 Type I restriction-modification system R subunit n=1 Tax=Mycoplasma penetrans RepID=Q8EUU6_MYCPE Length = 622 Score = 251 bits (642), Expect = 4e-65, Method: Composition-based stats. Identities = 94/444 (21%), Positives = 176/444 (39%), Gaps = 67/444 (15%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 R YQ+ A++ T+ + K ++VL TG GK+ V ++ + ++L LA Sbjct: 6 PPRYYQRVAINKTVEEVAKGKNKLLLVLATGTGKTYVAFQIIWRLWKSGIKKKILYLADR 65 Query: 59 KELVAQNHA-KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR-----NLDAFQ---- 108 L+ Q A ++ + ++ + ++ ++ Q ++ NL+ + Sbjct: 66 NILIDQTIAGDFKPF--KNSLYKIEKRNMDTSYQIYLSLYQQLSESNEEDNLELLKRSFK 123 Query: 109 -GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 F L+IVDECHR +S +++IL + +G+TATP + + Sbjct: 124 PDFFDLIIVDECHRGSARNDSNWRKILEYFDSATK----IGMTATPKETSEISNIDY--- 176 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERL----DMPVVQYDFSRLQAQSNGL-- 221 F + IY L+ I GYL P E + ++ Y + + G Sbjct: 177 ----------FGEPIYTYSLKDGINDGYLAPFEVIRFNTNIDSFGYRPEKGKLDVEGNLV 226 Query: 222 ----FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE 275 ++ D+N ++ ++R + I+ ++ K ++F +EHA+ + L E Sbjct: 227 EDRFYNPRDINTKIVIEERDKLVAKCITDFLKKTDRNKKTIVFCVDIEHAERMRRALANE 286 Query: 276 DAAL----------ITGDTPGAERDVLIENFKAQRFR---YLVNVAVLTTGFDAPHVDLI 322 ++ L ITGD + + ENF + +LTTG + +I Sbjct: 287 NSDLCAKDSRYVMRITGDESTGKGES--ENFCDDDLDYPTIVTTSKLLTTGVNCRTCKVI 344 Query: 323 AILRPTES--VSLYQQIVGRGLRLAPGKT--DCLILDYAGNPHDLYAPEVGTPKGKSDNV 378 + ++ ++QI+GRG R+ K ILD+ G + P+ KS + Sbjct: 345 VLDNNFGENGMTEFKQIIGRGTRIQEDKNKLYFTILDFNGASRFFADEKFNGPEIKSLDY 404 Query: 379 PVQVFCPACGFANTFWGKTTADGT 402 ++ F GF F D Sbjct: 405 DLKDFT-GDGFTYNFPEDEIDDTE 427 >UniRef50_Q04L29 Type I restriction-modification system, R subunit, putative n=31 Tax=Streptococcus RepID=Q04L29_STRP2 Length = 1116 Score = 251 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 97/481 (20%), Positives = 170/481 (35%), Gaps = 72/481 (14%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 R YQ+ A+ + F H+ A++V+ TGAGK+ L + VL LA Sbjct: 347 RHYQKHAIASVCEAFSNHRRQALLVMATGAGKTRTAVSLVDILSRHNWVKNVLFLADRTS 406 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVARNLDAFQ---------GE 110 LV Q + ++ L + + ++ + ++VF + ++ + + G Sbjct: 407 LVKQAYDSFRKLLPDLSVCNFLEDKEGAQSSRMVFSTYPTMIGAISGQEEVNQRPFTVGH 466 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+I+DE HR +Y+ I + R++GLTATP + Y F Sbjct: 467 FDLIIIDESHR---SIYQKYKSIFDYFDA-----RIVGLTATPRQDLDKNTYGFFNLEN- 517 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQYDFSRLQAQSNGLFS--- 223 Y L +K GYL +L +P + L + F Sbjct: 518 --------GVPTYAYDLEEAVKDGYLVAYHSIETKLKLPTDGLHYDDLSEEEKEHFDSKF 569 Query: 224 -----EADLNRELKKQQRITPHIISQIMEFAATRK----------GVMIFAATVEHAKEI 268 E D++ + + ++ TR +IFA +HA+ I Sbjct: 570 EDDSCEKDIDGSVFNSFVFNKSTVEIVLNELMTRGIQTASGDEIGKTIIFAKNHDHAEYI 629 Query: 269 VGLLPAED-------AALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAPHV 319 G+ A +I D LI++FK + + ++V +L TG D P V Sbjct: 630 RGIFNNRYPEKGSDYAQVI--DYSIKHYQTLIDDFKIEEKYPQIAISVDMLDTGIDVPEV 687 Query: 320 DLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPEVGTPK 372 + + S + + Q++GRG RL K + L+ DY N A Sbjct: 688 VNLVFFKKVRSKTKFWQMIGRGTRLCKDLFGPEQDKENFLVFDYGDNFDYFRADPRDGEG 747 Query: 373 GKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFK 432 ++ ++F G + + ++ + + DFR R Sbjct: 748 RHIVSLTQRLFNIKVDLIRELQGLQYQEDQFARAYRQQLVSELQGRIESLNELDFRVRMV 807 Query: 433 N 433 Sbjct: 808 L 808 >UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F8_ACTP7 Length = 787 Score = 251 bits (640), Expect = 8e-65, Method: Composition-based stats. Identities = 93/422 (22%), Positives = 165/422 (39%), Gaps = 63/422 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHV 58 R YQ+ A++ T+ + + ++V+ TG GK+ ++ + +VL LA Sbjct: 173 EPRYYQENAINLTIEAVAKGRNRILLVMATGTGKTYTAFQIIHRLKASGAKRKVLFLADR 232 Query: 59 KELVAQ-NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF------QGEF 111 LV Q ++ + + K+ +S +V Q + D F Sbjct: 233 NVLVDQPMTQDFKPF--KDKMVKVSNKKLDSSFEVYLALYQQLDGETDNELFKQFQPSFF 290 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DECHR E+S ++ IL + + +G+TATP + Sbjct: 291 DLIIIDECHRGSAKEDSNWRAILNYFNEATH----IGMTATPKETADASNISY------- 339 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPER----LDMPVVQYDFSRLQAQSNG------L 221 F D IY L+ I+ G+L P LD + + ++ NG L Sbjct: 340 ------FGDPIYTYSLKQSIEDGFLAPYRVIRVDLDCDLKGWRPTKGLTDKNGELVEDRL 393 Query: 222 FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL 279 ++ D + + R + I++ ++ ++F A + HA+ +V L +A + Sbjct: 394 YTIKDFDYNIILNDRTCLVAERITEFLKKTNRLDKTIVFCANINHAQRMVAELSRLNADM 453 Query: 280 ----------ITGDTPGAERDVLIENF-----KAQRFRYL-VNVAVLTTGFDAPHVDLIA 323 ITGD G D +E F + + + V ++TTG D+ L+ Sbjct: 454 LAKNPKYIRQITGDQTGKNDD--LEAFCDVQNEGNAYPVIAVTSKLMTTGVDSKTCKLVV 511 Query: 324 ILRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 + +S++ ++QI+GRG RL GK ILD+ G P +P Sbjct: 512 LDANIQSMTEFKQIIGRGTRLRTDAGKEFFTILDFRGVTRLFADPAFDGDPVAILELPEN 571 Query: 382 VF 383 Sbjct: 572 KP 573 >UniRef50_A0AI00 Complete genome n=11 Tax=root RepID=A0AI00_LISW6 Length = 418 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 91/367 (24%), Positives = 170/367 (46%), Gaps = 52/367 (14%) Query: 34 GAGKSLVIAELARLA---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG 90 GAGKS++++E+ R+ + VL L H KEL+ Q ++ + G Sbjct: 9 GAGKSVILSEIIRMTTNNKNHVLFLVHRKELIDQIRNTLIMNEVDMEFVKLG-------- 60 Query: 91 KVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT 150 VQ++ R L+ E SL+I+DE H + + Y++I+ H +K +++G T Sbjct: 61 -----MVQTIVRRLNKTS-EPSLIIIDESHHV---LANSYKKIIHHFSKA----KVVGFT 107 Query: 151 ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYD 210 ATP R+ G + + I ++ ++++I++ +L + +VQ + Sbjct: 108 ATPVRINGGGLGDIN-------------DALIEKVNVKWLIENRFLASYKYYAPEIVQTE 154 Query: 211 FSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG 270 L + G F L+ + K + + +I + A + + ++A+++ ++++ Sbjct: 155 --TLNVKQTGEFDMTGLDDQFNK-KMVWGDVIKHYQKLANGEQAI-LYASSIYQSEKMAA 210 Query: 271 LLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPT 328 A +A I G TP RD +I+ F+ + L N+ ++ GFD P + +LRPT Sbjct: 211 SFNAVGISSAHIDGKTPKLIRDDIIKRFREGEIKVLCNLDLIGEGFDVPDCSTVIMLRPT 270 Query: 329 ESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGT-----PKGKSDNVPVQ-- 381 +S+SLY Q RG+R GKT I+D+ GN P++ P+ S++ + Sbjct: 271 QSLSLYIQQSMRGMRYKQGKT-ATIIDHVGNVKRFGLPDMERTWSLEPRKGSNSTKAEAP 329 Query: 382 -VFCPAC 387 C C Sbjct: 330 VKICKEC 336 >UniRef50_A6DQ75 Type I restriction-modification system R subunit (Endonuclease) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQ75_9BACT Length = 1138 Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats. Identities = 89/435 (20%), Positives = 162/435 (37%), Gaps = 77/435 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 RPYQ+ A+ L F + A++V+ TG+GK+ L + R+L LA K Sbjct: 365 RPYQERAIKKVLETFEEKRRRALLVMATGSGKTRTAVALVKCLTEGNWCKRILFLADRKT 424 Query: 61 LVAQNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ---------GE 110 LV Q K ++ + + + + ++VF + Q++ +D G Sbjct: 425 LVGQAMRKSFRPYLPNLSMVNLLKEEENNKSRMVFSTYQTMINKIDVLNEDGTRQYGVGH 484 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+I+DE HR S+Y I + L+GLTATP L + F + Sbjct: 485 FDLIIIDESHR---SIYSKYGAIFDYFDA-----NLVGLTATP--LDQRDRNTFETFDLP 534 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPE----RLDMPVVQYDFSRLQAQSNGLFSE-- 224 G + L+ + +L + L P +S L + + E Sbjct: 535 DGQPTDV-------YSLKDAVDDKFLVMYKLKKPDLKFPSRGIKYSELPPEEQAHYEETF 587 Query: 225 --------------ADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEH 264 +N+ L + + ++ ++M E ++F + +H Sbjct: 588 TDELTDVIPEEVKGEAVNKWLFNEDTVRK-VLDKLMTEGIKVEGGDKLGKTIVFCRSRQH 646 Query: 265 AKEIVGLL-------PAEDAALITGDTPGAERDVLIENFKAQRF--RYLVNVAVLTTGFD 315 A+ +V + ++ + I +F+ + + V+V ++ TG D Sbjct: 647 AEYVVEVFDRMYPAYSGHFCQVVHNKCYDPQ--QTILDFEKPQLMPQIAVSVDMMDTGID 704 Query: 316 APHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEV 368 P V + + +S S + Q++GRG R K D I DY GN Sbjct: 705 VPEVVNLVFFKSVKSKSKFWQMIGRGTRTCENLFGPGKDKKDFRIFDYCGNFDFFKVNAE 764 Query: 369 GTPKGKSDNVPVQVF 383 G G +++ ++F Sbjct: 765 GFETGAPESLMQKMF 779 >UniRef50_UPI00016C5789 putative DEAD box family helicase, phage associated protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5789 Length = 611 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 99/406 (24%), Positives = 169/406 (41%), Gaps = 67/406 (16%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLA 56 + T RPYQ+++VD F + +++LPTG GK++V +++ GRVLVLA Sbjct: 1 MITPRPYQKQSVDRVFGRFDAGEPSTLVILPTGCGKTVVFGLVSQQWARECRPGRVLVLA 60 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-------KVVFGSVQSV--ARNLDAF 107 H EL+ Q + Q + A + G VV GSVQ++ R L + Sbjct: 61 HRDELIQQAAEELQGITGSAPAIEQADRYAVPAGGSMGDAPSVVVGSVQTLCRDRRLARW 120 Query: 108 -QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 + EF L++ DECH Y++I H + LG+TATP R + Sbjct: 121 PKDEFGLIVTDECHHA---TSPSYRKIYDHFGAA----KRLGVTATPKRADDLAL----- 168 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 +F +++ + + G+L P E+ + V D S ++ + FS+ Sbjct: 169 --------GHVFGSVAFDMGICDAVDEGWLCPVEQRYVTVNGMDLSAVKT-AGDDFSDGA 219 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIV---------GLLPAEDA 277 + L + +++ +E +IF A +++ + E A Sbjct: 220 IGAVLSGDS-VLDQMVAATIELCGDEP-TLIFTAPRPPGEQVSQGDLFADALNKIKPERA 277 Query: 278 ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 ++G+T R IE F+ ++LV ++ T GF+ P + + + RPT+S + Y Q Sbjct: 278 VFLSGETDKDVRRREIELFERGERQFLVGCSLFTEGFNVPKISRVVMARPTKSNAYYTQA 337 Query: 338 VGRGLRLAPG--------------------KTDCLILDYAGNPHDL 363 +GRG R G K L++D+ GN Sbjct: 338 IGRGTRTLRGTLHPDLATPEARRAAIAASAKPSVLVIDFVGNSGRH 383 >UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC93_PROVI Length = 556 Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 176/395 (44%), Gaps = 37/395 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLVLAHV 58 LR YQ AV+A + A+ ++ TG GKS+V ++ R VLVLAH+ Sbjct: 138 ELRNYQVSAVEAVEGARAHGQRKALAIMATGLGKSMVANQVIANELDRNPCQEVLVLAHM 197 Query: 59 KELVAQNHAK-YQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDA----FQGEFS 112 +LV Q A +Q LG + ++ G VVF + QS+ + + F Sbjct: 198 SDLVRQLEASSWQQLGKGTSTHLWTDGEQPAYSGGVVFATWQSLFSAMRKDAGSLRERFG 257 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L++VDE H + ++L HL+ L GLTATP+R + + Sbjct: 258 LVVVDEAHHAPSVG---FTELLEHLSPNF----LAGLTATPWRGDERSL----------- 299 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 + LF + ++ L + ++ G+L + M ++ + S+ + ADLN L Sbjct: 300 --QGLFGEPVFTLDIVAGMQMGFLAAVDY-RMLTDGINWEEVSRASSQGLTVADLNSHLV 356 Query: 233 KQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 +R + I + A K + F ++EHA+ + L + AL+ P + Sbjct: 357 VPERDIGM-VEVICDKMAGIKNPRALAFCRSIEHAERLQPLFASRGVKTALLHSQLPREQ 415 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R + F+ L+++ +L G D P V+L+A +R T S ++ Q +GRGLR++ GK Sbjct: 416 RFKNLSGFRMGHIDLLISIEMLNEGIDIPEVNLVAFMRVTHSRRIFLQQLGRGLRISKGK 475 Query: 349 TDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVF 383 + L+LD+ + + A K + ++V Sbjct: 476 ENVLVLDFVADIRRIAAGLEINRLAKERSAGMEVV 510 >UniRef50_Q5NWL0 Type I restriction-modification system (Restriction subunit) n=4 Tax=Betaproteobacteria RepID=Q5NWL0_AZOSE Length = 714 Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats. Identities = 99/480 (20%), Positives = 163/480 (33%), Gaps = 79/480 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 R YQ +D + ++ + TG GK+ A + RVL L Sbjct: 139 RDYQTACIDKLCQEITAGRRKLLVEMATGTGKTRTAAAFIKRLFEANAVTRVLFLVDRIP 198 Query: 61 LVAQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q + + L +R + ++ ++QS+ + G F L+I DE Sbjct: 199 LAKQTEDAFAEHLSDFPAYVLRTGRRFQDEKRITITTLQSMVNIYHEYSAGYFDLVISDE 258 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL- 177 CHR ++ +L H + +GLTATP G + VR + Sbjct: 259 CHR---SIYGKWSGVLKHFDGIQ-----VGLTATPCVANLGDLGDAEDKLFVRDTLRFFE 310 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVV-------------QYDFSRLQAQSNGLF-- 222 + ++ I GYL P + V + D+S + + F Sbjct: 311 VDKPTFSYKMKDAIHDGYLVPYQIYKAKTVKTAAEGGFEVKRGELDWSAMDTTTRAEFEK 370 Query: 223 ----------SEADLNRELKKQQRITPHIISQIMEFAATR-------------KGVMIFA 259 L R+ +R I+ + E ++FA Sbjct: 371 LFEGSDAIVIDPNALERKFTIPER-NRAIVREFREVLEKGFTDAKGVVRKPLLGKTIVFA 429 Query: 260 ATVEHAKEIVGLLPAEDAA------------LITG--DTPGAERDVLIENFKAQRF-RYL 304 T HA+ + L + A +++G + I+ FK + F + L Sbjct: 430 VTKRHAETLAQLFDSAFADQKPSPEVRYADYVVSGMGKDDTVDGMTKIKRFKKEPFPKVL 489 Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 V+V +L TGFD P V + R T S LYQQ+ GRG R A GK + D+ G Sbjct: 490 VSVNMLDTGFDCPEVANLVFARFTRSAILYQQMRGRGTRKAKGKPVFTMFDFVGVTDYHG 549 Query: 365 APEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE-DDDGHRE 423 + G + +Q P + + +H + W D+DG+ Sbjct: 550 DNDAEGEGG----IVIQKAAPK----RPTEPRKLLSLDIDDHIDPTTREWVTVDEDGNMV 601 >UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=Firmicutes RepID=C2CJE8_9FIRM Length = 781 Score = 249 bits (635), Expect = 3e-64, Method: Composition-based stats. Identities = 95/474 (20%), Positives = 182/474 (38%), Gaps = 69/474 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAH 57 + R YQ+ A++ L + K ++V+ TG GK+ ++ + ++L LA+ Sbjct: 167 YPPRYYQRIAINRILEEIAKGKDRLLLVMATGTGKTYTAFQIVYRLLQSGQKKKILYLAY 226 Query: 58 VKELVAQN----HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN------LDAF 107 LV Q A + + + + SH +V F Q + + F Sbjct: 227 RNILVDQTISGDFAPLKKVIHKVNFSKDDPTTITSH-QVYFSLYQQLIGEDGKEHFSELF 285 Query: 108 QGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 + + F L+IVDECHR E+S +++IL + + +G+TATP ++ HY Sbjct: 286 RPDFFDLIIVDECHRGSAKEDSSWRRILEYFKSASQ----IGMTATPKET--KYVSNSHY 339 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----------QYDFSRLQA 216 F + IY LR I+ G+L P + +++ Q D S + Sbjct: 340 -----------FGEPIYSYSLREGIEDGFLAPFKVINITTDIGESWRPYKGQLDKSGKEI 388 Query: 217 QSNGLFSEADLNRELKKQQRI--TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA 274 + +++ +D + + + R I+ ++ ++F T E A+ + L Sbjct: 389 EDR-IYNNSDYDYNIVIEDRTYQVAKEITAYLKATDRMAKTIVFTPTEEAAERMRVALVN 447 Query: 275 EDAALITGDTPGAERDVLIENFKAQRFRYLV-----------NVAVLTTGFDAPHVDLIA 323 + L+ + R + + + Y + +L+TG D V LI Sbjct: 448 LNNDLVKENPDYCVRITGSDEYGKSKLDYFISISSQYPVIATTSKLLSTGVDTKMVKLIV 507 Query: 324 ILRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 + S++ ++QI+GRG RL GKT +++D+ P+ P D + Sbjct: 508 LDTMLNSMTEFKQIIGRGTRLREKEGKTHFVLMDFRNVSRLFADPDWDGPLIIDDGFNPK 567 Query: 382 VFCPACGFA----NTFWGKTTADGTLIEHFGRRCQGWFE-----DDDGHREQCD 426 T G +I+ G + + + D + +C+ Sbjct: 568 KPNDKEAHEPPETYTTGGGINRSVPIIDKNGLKVKIINKTVSIYDTNSKLLRCE 621 >UniRef50_Q043T1 Type I site-specific restriction-modification system, R (Restriction) subunit related helicase n=14 Tax=Firmicutes RepID=Q043T1_LACGA Length = 1113 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 91/419 (21%), Positives = 155/419 (36%), Gaps = 81/419 (19%) Query: 6 RPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQ+ A+ A F + ++ A++V+ TG+GK+ L ++ VL LA Sbjct: 340 RYYQKAAIQAVCESFSKENRRKALLVMATGSGKTRTAVGLVKVLLNAGWIKHVLFLADRD 399 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD----------AFQG 109 LV Q + L + + + + VF + ++ +D G Sbjct: 400 ALVTQAKRSFVNLLPDLSSTNLVEDKSNYNARCVFSTYATMMNVIDTATDDDKKKLYTAG 459 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 F L+IVDE HR ++Y+ I T+ L+GLTATP + + Sbjct: 460 HFDLIIVDEAHR---SIYNKYRNIFTYFDA-----PLVGLTATP--KDDIDKNTYSIFNL 509 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----QYDFSRLQAQSNGLFSE- 224 G Y L + GYL P + ++ + ++ L Q + E Sbjct: 510 EDG-------VPTYGYDLAQAVDDGYLVPYKSIETHLKFMENGINYDDLSTQEKEEYEET 562 Query: 225 --------------ADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEH 264 LN+ L + I +++ +M ++ +IFA H Sbjct: 563 FTDEDGDLPKKIDSGKLNKWLFNKDTIRK-VLNILMNQGLKIDYGEKIGKTIIFAKNHRH 621 Query: 265 AKEIVGLLPAED------------AALITGDTPGAERDVLIENFKAQR--FRYLVNVAVL 310 A+EI+ + E A +I T ++ I+ F + V+V +L Sbjct: 622 AEEILKVFNEEYPQFSRNTHGQPYATVIDNYTNYSQ--SAIDEFSDPDKLPQIAVSVDML 679 Query: 311 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP------GKTDCLILDYAGNPHDL 363 TG D P + + S + + Q++GRG RL P K + I D+ N H Sbjct: 680 DTGIDVPECLNLVFFKKVMSKAKFFQMIGRGTRLCPHLLDGKDKQEFYIFDFCDNFHFF 738 >UniRef50_A6L307 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=A6L307_BACV8 Length = 751 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 90/362 (24%), Positives = 164/362 (45%), Gaps = 44/362 (12%) Query: 15 ATLNHFRRHKTPAVIVLPTGAGKSLVIA----ELARLARGRVLVLAHVKELVAQNHAKYQ 70 + ++ H++ ++ +PTG GK+ ++A E A V ++AH +ELVAQ Sbjct: 4 RLMEAWKAHRS-VMVQMPTGTGKTHLLASVVSEFVSSAGSGVWLIAHRRELVAQMEETLA 62 Query: 71 ALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQY 130 G+ + V SVQ ++R+ + L+++DE H + Y Sbjct: 63 KYGI-----------RREDTPVRVMSVQWLSRHWNEAGDAPGLIVIDEAHHA---LAASY 108 Query: 131 QQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYM 190 ++ P + LG+TATP RL + + LF + + Sbjct: 109 TEMWKRY----PAAKKLGVTATPCRLNRRGFTE-------------LFEVLVTSWSIAEF 151 Query: 191 IKHGYLTPPERLDMPVVQYDFSRL----QAQSNGLFSEADLNRELKKQQRITPHIISQIM 246 I+ G L+ + + + + + + ++G + +++ L ++ I + + Sbjct: 152 IEKGVLSVFDYVSIRPGSEERRLIDGLEKRGADGDYQVKEMDAVLNRRPGI-ERLYRSVR 210 Query: 247 EFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLIENFKAQRFRYL 304 +FA+ +KG M++A ++EHA+ I +A + TP ER ++E F+ + L Sbjct: 211 QFASGKKG-MVYAISIEHARRIAEYYSRRGVNAVAVDSKTPAMERKRMVEEFRHGKIEVL 269 Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 VNV V + GFD P V+ + + RPT S++ Y Q VGRGLR + GK C+++D G Sbjct: 270 VNVDVFSEGFDCPDVEFVQLARPTLSLAKYLQQVGRGLRRSEGKEACMLIDNVGLYRIFG 329 Query: 365 AP 366 P Sbjct: 330 LP 331 >UniRef50_B9BQH5 Putative helicase n=2 Tax=Burkholderia multivorans RepID=B9BQH5_9BURK Length = 515 Score = 248 bits (632), Expect = 7e-64, Method: Composition-based stats. Identities = 102/413 (24%), Positives = 159/413 (38%), Gaps = 56/413 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG---RVLVLAHVKEL 61 LRPYQ E+V+A R V++ PTGAGK+ + A L R + L Sbjct: 7 LRPYQLESVEALRAGMRAGHRAQVLMAPTGAGKTEIGAYLCDEVNKKGRRAAFVVDRVNL 66 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 V Q ++ G+ + A R+ + ++ S Q++ + F + LLIVDECH Sbjct: 67 VDQTSQRFDKYGIPHGVIQADHWRRRGYERIQICSAQTLEKR--GFFPDLDLLIVDECH- 123 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 ++ T L + LR++GL+ATPF G IY + Sbjct: 124 -------ATRRETTRLIQNRADLRVIGLSATPFTKGLSQIYT----------------NL 160 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN-RELKKQQRITPH 240 + +I +L P + V +++ A G +S+ ++ R + I Sbjct: 161 VNVTTTNRLIADNWLVPLQVYAARAVDMTGAKVVA---GEWSDKEIEQRGMAIIGDIVSE 217 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGAERDVLIENFK 297 I + ++F+ATVEH E+ + + D R LIE F+ Sbjct: 218 WIDKTRLHFGGPVKTIVFSATVEHGAELCRQFNEQGFNFQQISYRDGSDERRRELIEEFR 277 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRP-TESVSLYQQIVGRGLRLAPGKTDCLIL 354 LV+ V T GFD + RP +S+S + Q +GR +R +PGKT L L Sbjct: 278 KPDSEIHGLVSCEVFTKGFDVSDILCGIAARPYRKSLSSHIQQLGRVMRPSPGKTFGLWL 337 Query: 355 DYAGNPHDLYAPEVG-----------------TPKGKSDNVPVQVFCPACGFA 390 D+ GN K + Q+ C CGF Sbjct: 338 DHCGNALRFGTDTARIFEHGLDRLDDGDLDSKVRKEPTLEEKKQITCAGCGFV 390 >UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W6_THESM Length = 841 Score = 247 bits (631), Expect = 8e-64, Method: Composition-based stats. Identities = 96/405 (23%), Positives = 151/405 (37%), Gaps = 68/405 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHV 58 R YQ AV L + ++ + TG+GK+ V ++A R ++L + Sbjct: 161 KPRYYQDVAVRRALEEILLGRKRLLLTMATGSGKTYVAFQIAWKLRKSNFLKKILFIVDR 220 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA------RNLDAFQGE-F 111 L Q + ++A G + V F + Q++ R F + F Sbjct: 221 VYLRNQAYNAFEAFG--NSRWELKGDNFNFAKDVYFATYQTLYSEKNGKRVYQYFDPDYF 278 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DECHR G + + IL + + LGLTATP R +Y++ Sbjct: 279 DLVIIDECHRSGWNR---WHDILGYFN----NAIHLGLTATPKRSDNVDVYKY------- 324 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSR-----------------L 214 F D +YE L I+ GYL PPE + D Sbjct: 325 ------FGDPVYEYKLAQGIEDGYLAPPEEIIRVYTNIDKEGKITFKELRSAGVKLEIPE 378 Query: 215 QAQSNGLFSEADLNRELKKQQRITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLL 272 +A+ ++ + + + R + I+Q +E ++F T HA+E+ LL Sbjct: 379 EAELKEYYTAEEFEKSIILPDRTKAIVNWIAQFLESTNPFAKTVVFCPTQRHAREVAALL 438 Query: 273 PAED---------AALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVD 320 A I D P A VL +F + V VL+TG D P + Sbjct: 439 NNHFNNKFNVDNYAYPIISDDPEAH-QVLKNSFASNDEIFPVVATTVDVLSTGIDVPPIK 497 Query: 321 LIAILRPTESVSLYQQIVGRGLRLAPG--KTDCLILDYAGNPHDL 363 I L+ S + QI+GR RLA K ++D+ G Sbjct: 498 NIIFLKHIGSKVEFHQIIGRASRLAENMRKFTFRVIDFTGATRLF 542 >UniRef50_C0A3V9 DNA or RNA helicase of superfamily II-like protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3V9_9BACT Length = 687 Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats. Identities = 116/387 (29%), Positives = 176/387 (45%), Gaps = 48/387 (12%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVI---AELARLARGRVLVLAHVKELV 62 R YQ A DA +H H +IVL TG GK+++ A + G VL++AH +EL+ Sbjct: 58 RDYQLAAFDAI-DHGFAHVQRILIVLATGLGKTVIFTRTAGIFVKNHGHVLIIAHSEELL 116 Query: 63 AQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDE 118 Q K ++ GLEA A ++ VV SVQ+++R L ++ + FSL+I+DE Sbjct: 117 DQAADKLLKSTGLEAAKEKA-EHHATTYDPVVIASVQTLSRETRLKSWPPDHFSLIIIDE 175 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH-----GMVRGD 173 CHR Y+ IL H R+LG+TATP R K + G+ Sbjct: 176 CHR---SMAKSYRAILDHFATA----RVLGVTATPDRGDKRALSPIFQPVPITTTGADGN 228 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 YE L ++ G+L P +P+ + D + ++ + S+ D + Sbjct: 229 TVTKLHPAAYEFNLLQAVRAGWLVRPVVKTLPL-EIDLNGIKTRRTSNGSDFDPTEVSHR 287 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDV 291 + I I TR +IF +V A+ + L +A ++GD P +R+ Sbjct: 288 IEPFLGEIARLIEIETRTRGQGLIFTPSVATARMMADALLAVGINAGYVSGDCP--DREA 345 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL------- 344 I N+K+ + R LVN +L GFD +D +++LRPT+ +LY Q VGRG R Sbjct: 346 KIANYKSGQTRVLVNAMLLIEGFDHDAIDWVSVLRPTKVRALYVQAVGRGTRPLSPLVHA 405 Query: 345 ---APG------------KTDCLILDY 356 AP K D LILD+ Sbjct: 406 LNSAPDADTRRALIARSAKPDLLILDF 432 >UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax=Gammaproteobacteria RepID=C4LDI1_TOLAT Length = 1123 Score = 247 bits (630), Expect = 1e-63, Method: Composition-based stats. Identities = 107/436 (24%), Positives = 169/436 (38%), Gaps = 55/436 (12%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLAR----GRVLVLAHVKE 60 RPYQ EA+ + N F+ + +IV TG GK+ V IA +A L + RVL L KE Sbjct: 353 RPYQIEAIKSVTNRFQNQRRQTLIVQATGTGKTRVSIALVALLLKARWVKRVLFLCDRKE 412 Query: 61 LVAQNHAKYQ-ALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q ++ L E R + ++ + + G F L+I DE Sbjct: 413 LRRQADDAFKLHLASEPRCVVGESNRIDQSARIFVATYPGMMNRFSQLDVGFFDLIIADE 472 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL------------GKGWIYQFHY 166 HR ++Y+ I + + +GLTATP + + F Sbjct: 473 SHR---SIYNKYRDIFDYFDALQ-----VGLTATPVKFIARNTFDLFGCENGDPTFNFDL 524 Query: 167 HGMVRGDEKALFRDCIYELP---LRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFS 223 + + + L + E LR I + LTP +R ++ D +AQ N F Sbjct: 525 AEAIAHEPRYLNPFRVKEFTTEFLRDGIHYKDLTPEQR---EQLEEDLGAEEAQ-NVHFK 580 Query: 224 EADLNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAKEI----VGLLP 273 ++ +++ I+ +M +IFA + EHA+ + V L P Sbjct: 581 GKEIGKKIFSAST-DCQILENLMTNGIKDATQSLVGKTIIFAQSQEHAEHLESMFVKLYP 639 Query: 274 AEDAALITGDTPGAER-DVLIENFK--AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 + +R + I+ FK FR ++V +L TG D P V + RP +S Sbjct: 640 QYGTKVCKVIHNKVDRPEARIDEFKSPDNPFRIAISVDMLDTGIDVPEVVNLVFARPVKS 699 Query: 331 VSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVF 383 + Q++GRG RL K + LI D+ GN S ++ VF Sbjct: 700 WVKFWQMIGRGTRLCENLFGPGKDKEEFLIFDHYGNFKYFDEEYTEAEVVASRSLLQTVF 759 Query: 384 CPACGFANTFWGKTTA 399 A+T KT+ Sbjct: 760 EARLTLADTAMKKTSV 775 >UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 Tax=Gammaproteobacteria RepID=T1RK_ECOLI Length = 1170 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 111/473 (23%), Positives = 182/473 (38%), Gaps = 62/473 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVI-AELARLAR----GRVLVLAH 57 LR YQ++AV A + + ++ + TG GK+ A + RL + R+L L Sbjct: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRK-------ESHGKVVFGSVQSVARN-LDAFQG 109 + L Q ++ + D F + K E K+ +VQS+ + L + + Sbjct: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 Query: 110 ----EFSLLIVDECHRIGD----------------DEESQYQQILTHLTKVNPHLRLLGL 149 + ++VDE HR D S Y++IL H V + L Sbjct: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-----IAL 617 Query: 150 TATP----FRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 TATP ++ +Y++ Y V D + +D ++ R + YL+ E+++ Sbjct: 618 TATPALHTVQIFGEPVYRYTYRTAVI-DGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI 676 Query: 206 VVQYDFSRLQAQSNGLFSEADLNRELKKQQ--RITPHIISQIMEFAATRKGVMIFAATVE 263 Q + + + F AD NR L R + ++ ++ + + ++F T Sbjct: 677 SPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGS-QKTLVFCVTNA 735 Query: 264 HAKEIVGLLPA----------EDAAL-ITGDTPGAERD--VLIENFKAQRF-RYLVNVAV 309 HA +V L A DA + ITGD R +I F +R +V V + Sbjct: 736 HADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDL 795 Query: 310 LTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPE 367 LTTG D P + I LR S LY+Q+ GR RL P KT I D L + + Sbjct: 796 LTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD 855 Query: 368 VGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 P V +Q + T+ + EH + + G Sbjct: 856 TMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQLVAKLQRIIG 908 >UniRef50_B1VEN8 Type I restriction-modification system, restriction subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEN8_CORU7 Length = 1226 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 102/418 (24%), Positives = 162/418 (38%), Gaps = 81/418 (19%) Query: 6 RPYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQQE + F K A++V+ TG GK+ V A+L R G+VL LA Sbjct: 424 RDYQQEMIRRVTEAFESQLKRRALLVMATGTGKTRVAIATAKLLRQANWVGKVLFLADRT 483 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-------FQG-EF 111 LV Q H + L ++ L+ E G V + Q++ +D F+ +F Sbjct: 484 ALVDQAHDNFVDLYPDSAPVNL-LREPEGTGGVYVSTYQTMMGLIDDDGEHPAAFRPFDF 542 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DE HR ++++IL + +LGLTATP + + Y Sbjct: 543 DLIIIDEAHR---SIYHRFKRILDYFDA-----YVLGLTATP----RAEVTHNTYQLFDI 590 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERL-----------------DMPVVQYDFSRL 214 D+ L I+ YL PP+ L + + +D + Sbjct: 591 EDKT-----PTGSYTLEQAIEDKYLVPPQVLAQDSLFLRSGVRYEDLDEEEQLLWDAAEW 645 Query: 215 QAQSNGL-------FSEADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFAAT 261 +G + A++N L + I ++ ++E + +IFA T Sbjct: 646 GTDEDGNPLDPPDGVTAAEINSRLYNRDTIRG-VLRTLVEQGIKVEGGDRLGKTIIFART 704 Query: 262 VEHAKEIVGLL-------PAEDAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVLTT 312 HA+ I L E AA+IT T A ++ FK ++V +L T Sbjct: 705 QRHAELINEELGRCFPQQAGERAAVITHSTRYA--AEELKRFKNPAGTLDIAISVDMLDT 762 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDL 363 G D P V + +P S + + Q++GRG RL K + D+ GN Sbjct: 763 GVDVPEVVNLVFFKPVYSATKFWQMMGRGTRLRRDLFGENLHKDKFRVFDFCGNVRFF 820 >UniRef50_Q2P0A6 Type I restriction-modification system R subunit n=10 Tax=Proteobacteria RepID=Q2P0A6_XANOM Length = 1183 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 111/502 (22%), Positives = 174/502 (34%), Gaps = 100/502 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL-VIAELARLAR----GRVLVLAH 57 LR YQQ A+ A ++ + TG GK+ +I + RL + R+L L Sbjct: 463 LNLRDYQQRAIQAVEGALASGARNCLLAMATGTGKTRTMIGLIYRLLKAERFHRILFLVD 522 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q Q + LE ++ R +V +VQ++ R + Sbjct: 523 RSALGTQATETMQDMQLEQNQTLAQIYNLDGLDDTRTADETRVQVATVQAMVRRIFQSDD 582 Query: 110 E-----FSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRLLG 148 F ++VDE HR SQY+++L + +G Sbjct: 583 PPPIGTFDCIVVDEAHRGYTLDQEMTDGELAVRDHAQYLSQYRRVLDYFDAC-----RIG 637 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PPERLDMP 205 LTATP +F IY R + +L PP R Sbjct: 638 LTATP-----------------AKHTTEIFGKPIYTYSYREAVADDWLIDHEPPIRYTTA 680 Query: 206 V----VQYDFSRLQAQSN---GLFSEADLNREL------KKQQRITPHIISQIMEFAA-- 250 + + +D + N G ADL EL ++ IT + + E A Sbjct: 681 LGKNGIHFDRGERVSVINTQTGDVDTADLEDELDFNIESFNRRVITANFDRVVCEQLAIE 740 Query: 251 ----TRKGVMIFAATVEHAKEIVGLL------------PAEDAALITGDTPGAERDVLIE 294 + +IF HA+ + L A+ITG + D LI Sbjct: 741 LDPDGEEKTLIFCVNQPHAERVKHQLDEAFKQVHGNYYNQASVAVITGKSDKV--DQLIR 798 Query: 295 NFKAQRFRYL-VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 N+K +RF + + V +LTTG D P + + +R S LY+Q+ GR R GKT Sbjct: 799 NYKNERFPTIAITVDLLTTGIDVPRIANLVFMRRVRSRILYEQMKGRATRRCDDIGKTVF 858 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFW-----GKTTADGTLIEH 406 I D L + P K N+ ++ G ++ G + AD L + Sbjct: 859 RIFDPVDLYAALEDVDTMRPLVKDPNISIEQLVHELGQQRSYDAPGSNGGSHADDALDQL 918 Query: 407 FGRRCQGWFEDDDGHREQCDFR 428 R + + ++ D R Sbjct: 919 SQRIMRVLRKAQHRAEQRPDLR 940 >UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E6A8_9CORY Length = 1158 Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 99/426 (23%), Positives = 159/426 (37%), Gaps = 72/426 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 RPYQ + A F A++V+ TG GK+ L + VL LA K Sbjct: 393 RPYQITMLQAVAERFGAGHRRALLVMATGTGKTRTAIALVKQLAQAGWVKNVLFLADRKS 452 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG--EFSLLIVDE 118 LV Q + + + L+ + G+V + Q++ + L + G +F L+IVDE Sbjct: 453 LVKQAAEAFSEHLRDMPVVDL-LRNQHGTGQVYCSTYQTMMKLLGSRFGTYQFDLIIVDE 511 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR +Y +I + + LLGLTATP R + Y D Sbjct: 512 AHR---SIYRRYSRIFDYFDSL-----LLGLTATP-RCD---VDHNTYALFQLND----- 554 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVV-----------------QYDFSRLQAQSNGL 221 L + GYL P + V Q++ +GL Sbjct: 555 GQPTANYSLDEAVDEGYLVPFKAFQCSSVILRDGVAYKDLSPEEQQQWENQDWGIDDDGL 614 Query: 222 -------FSEADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEHAKEI 268 ++N +L + I ++ Q++ A + F + +HA+ + Sbjct: 615 PLDIPLEVESEEINLKLYNKDTIRK-VVGQVLCHGIKVAGADRIGKTIFFTRSKKHAQLV 673 Query: 269 VGLL----PAEDAALITGDTPGAERDVLIENFKA---QRFRYLVNVAVLTTGFDAPHVDL 321 ++ P AA+IT + + LI+ FKA ++V +L TG D P V Sbjct: 674 CDIIHETNPQVRAAVITHEVYDS--LDLIDRFKASGKGSLDVAISVDMLDTGVDVPAVVN 731 Query: 322 IAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGK 374 + +P S + + Q++GRG RLAP K + + DY N E Sbjct: 732 LVFFKPVYSNTKFWQMIGRGTRLAPNLFGKGLDKREFYVFDYCDNLRRFEDAEHIVSTTG 791 Query: 375 SDNVPV 380 S P+ Sbjct: 792 SQQRPL 797 >UniRef50_B3T0J4 Putative DEAD/DEAH box helicase n=1 Tax=uncultured marine microorganism HF4000_005I08 RepID=B3T0J4_9ZZZZ Length = 607 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 112/486 (23%), Positives = 180/486 (37%), Gaps = 38/486 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR--LARGRVLVLAHVKE 60 LR +QQ+ +D ++ PTGAGK+++ ++ A +V+VL H Sbjct: 1 MKLRNWQQKIIDD-FPSITASYKRFILKAPTGAGKTVLARQIIDQFYAGKKVIVLCHRLV 59 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 L+ Q + + + + ++ + LD + L+IVDE H Sbjct: 60 LLDQLQSVLSENRRVRTLAVSDKGTAFDNYDILLSTSMRAREVLDDAIPKADLIIVDEAH 119 Query: 121 RIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 R+ + Y++I+ K P +GLTA+P R Q + F Sbjct: 120 RVSPNGRG-YRRIIEKFRKEGKPSAHFMGLTASPERRTGDQRDQLNLA----------FD 168 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI-- 237 I ++ +I G L P+ V D + S G + + L E+ K + Sbjct: 169 AIIDCANIQELISEGILVQPKYRPYFVHDLDLDSINVSS-GEYPVSRLTDEIIKSSMLDY 227 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIEN 295 H + ++R F V A L +A +IT T ER ++ Sbjct: 228 ATHAYMEERSTISSRPTSAWFCPDVRVAGITRDRLESIGINAEIITAGTSIKERRRILSG 287 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 LV+V VLT G+D P ++I +RPT S L+ Q VGRGLR APGK +C+++D Sbjct: 288 HHTGDIEALVSVGVLTEGWDNPACNIIVHMRPTLSKVLWGQSVGRGLRSAPGKEECIVID 347 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTF-WGKTTADGTLIEHFGRRCQGW 414 + N E S F N F W D EH Sbjct: 348 VSSNWTTFGPAEKLKWTLWSPPRSFLR------FQNRFNWIGQQQDDE--EHPE--TYLL 397 Query: 415 FEDDDGHREQCDFRFR-----FKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLK 469 ++D C + +R CP C + + R D + D + L + Sbjct: 398 CKNDIIGGRPCSYIYRKNQTDGDACPVCGTYAAVDIYKERRLDLTISD--NKLHRIFFSR 455 Query: 470 DALVLR 475 A + + Sbjct: 456 TAEIYK 461 >UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=B8ECU5_SHEB2 Length = 1233 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 107/476 (22%), Positives = 176/476 (36%), Gaps = 86/476 (18%) Query: 3 FTLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLVLA 56 T R YQ+ A+ L HF H+ ++V+ TG GK+ + L L +L LA Sbjct: 424 ITNRHYQKAAITHILQHFELEHQRKVLLVMATGTGKTRTVISLVDLLVKNDWIKNILFLA 483 Query: 57 HVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---- 110 L++Q + L + ++G + ++ F + ++ LD + Sbjct: 484 DRNALLSQAKKNFVKLLPRVSCSVLSSGQSKDSIDSRLYFATYPTMKNLLDRGADDRPFG 543 Query: 111 ---FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 F L+IVDE HR S+Y+QI + + L+GLTATP + + Sbjct: 544 VGHFDLIIVDEAHR---SVYSKYRQIFDYFDGL-----LVGLTATP--KDEVEKDTYGIF 593 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV------VQY----DFSRLQAQ 217 + +G + D YL PP ++ + V+Y D +L+ + Sbjct: 594 DLPKGMPTYAYEDAS-------AYAEKYLVPPTKISVATKFLRNGVKYQELSDEEKLEWE 646 Query: 218 SNGLFSE------ADLNRELKKQQRITPHIISQI---------MEFAATRKGVMIFAATV 262 + ++ +++N+ L + + +E +IFAA Sbjct: 647 NKAELTDREEVLPSEVNKFLFNEDTAEKMFAQLMSKDELGGIHVEGGDVIGKTIIFAANN 706 Query: 263 EHAKEIVGLLPAED-------AALITGDTPGAERDVLIENF------------KAQRFRY 303 +HA + + A +IT A+ LI+ F K R Sbjct: 707 DHAVFLEKIFNKNYPKWAGKLARVITFKETYAQ--SLIDEFGGEENNCKDFDPKNPTCRI 764 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDY 356 ++V +L TG D P V + + S + Q+VGRG RL P KT I DY Sbjct: 765 AISVDMLDTGIDVPEVVNLVFFKVVRSKVKFTQMVGRGTRLCPNLFGPGDDKTTFKIFDY 824 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQ 412 N A G P G + V QVF + T D T + + C+ Sbjct: 825 CQNFEFFDANPEGLPVGITKPVMQQVFEKRVQLS-TLLNARLLDDTYRDKYPEDCE 879 >UniRef50_C9KLJ8 Type I restriction-modification system, R subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLJ8_9FIRM Length = 772 Score = 245 bits (625), Expect = 4e-63, Method: Composition-based stats. Identities = 90/415 (21%), Positives = 168/415 (40%), Gaps = 58/415 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAH 57 F R YQ+ AVD TL+ R + ++V+ TG GK+ ++ R ++L LA Sbjct: 161 FAPRYYQRVAVDRTLDAIARGQKRLLLVMATGTGKTYTAFQIIYRLRKAGLGKKILYLAD 220 Query: 58 VKELVAQN-HAKYQALG--LEADIFAAGLKRKESHGKVVFGSVQSV------ARNLDAFQ 108 LV Q+ ++ L + +A+ + + +V F Q + R + F+ Sbjct: 221 RNILVDQSIQQDFRPLASVIHKVNYASDDRTTITSYEVYFSLYQQLFGENDEERFRELFR 280 Query: 109 GE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 + F L++VDECHR +S++++IL + +G+TATP Sbjct: 281 PDFFDLIVVDECHRGSAKADSRWRKILDYFDTAIQ----IGMTATP-------------K 323 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----------QYDFSRLQAQ 217 F + +Y LR I G+L P +++ + Q DF + + Sbjct: 324 ETAYVSNIDYFGEPVYTYSLRQGIDDGFLAPFRVINVQMNIGEGWRPCKGQRDFFGREIE 383 Query: 218 SNGLFSEADLNRELKKQQRI--TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE 275 +++ D + + + RI I+ + ++F A A+ + L + Sbjct: 384 DR-VYNNTDYDYNIVLEDRIREVAARITNYLLHTDRMAKTIVFCADEAAAERMRHALAQQ 442 Query: 276 DAALITGDTPGAERDVLIENFKAQRFRYLVNV-----------AVLTTGFDAPHVDLIAI 324 +A ++ R + + + Y ++V +L+TG D V LI + Sbjct: 443 NADMMKKYPNYVVRITGSDPYGKSQLGYFISVASPTPVIATTSQLLSTGVDCKMVRLIVL 502 Query: 325 LRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDN 377 S+++++QI+GRG RL GK +I+D+ G P+ P + Sbjct: 503 DENITSMTMFKQIIGRGTRLRYDEGKRSFVIMDFRGVTRLFADPDWDGPIIEDPG 557 >UniRef50_B6ALE7 Putative DEAD/DEAH box helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6ALE7_9BACT Length = 756 Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 150/391 (38%), Gaps = 48/391 (12%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLARG----RVLVLAHVKE 60 RPYQ+EA+ A K +I LPTG GK+ L+ L RL + R+L L + Sbjct: 172 RPYQKEAMQALDRTIELGKRRFLIELPTGTGKTDLISLYLKRLIQAGYAERILFLVDRDQ 231 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFSLLIVDEC 119 L Q Q L + ++ +Q++ + F G F +++ DEC Sbjct: 232 LARQAIEAIQDLLPVHSSYWLKSGMVRQEKQITVCLLQTMIGRVAEFTSGYFDVVVADEC 291 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 HR +Q LT ++ +G+TATP + + F+ D Sbjct: 292 HR---SIYGAWQTALTRFDALH-----IGMTATPAMYIERNTFDFYQCQDETPD------ 337 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ----- 234 Y ++ + GYL P + S + + A+ R+ + Sbjct: 338 ---YSYSIQEAFRDGYLVPYKFATGITTI--LSEGADEGEEHYDPAEFERKWTNKSTNRL 392 Query: 235 -----QRITPHIISQIMEFAATRK-GVMIFAATVEHAKEIVGLLPA-------EDAALIT 281 RI+ I + T ++FA T HA + L A +IT Sbjct: 393 MMKEFDRISWQIYKDLAPGQRTGPGKSVVFAITKHHAARLARYLNELHPEAKGRYAEVIT 452 Query: 282 GDTPGAERDVLIENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 D P A + LI FK + + + V+V +L TGFD + + + R S LYQQ+ GR Sbjct: 453 SDIPDA--NDLIRRFKREEYPQVAVSVGMLDTGFDCREILHLVLCRRVRSPILYQQMRGR 510 Query: 341 GLRLAP--GKTDCLILDYAGNPHDLYAPEVG 369 G R A GK +I D+ N + Sbjct: 511 GTRTADHIGKNKFIIYDFFKNHEYFNDSDTD 541 >UniRef50_C0A6N5 DNA/RNA helicase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N5_9BACT Length = 526 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 158/349 (45%), Gaps = 30/349 (8%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL--ARGRVLVLAHVKEL 61 LRPYQ E V A L + V TGAGK+++ E+ RL G VL LA K+L Sbjct: 17 QLRPYQTEFVSAALASLIEF-DRVLGVAATGAGKTVMAGEITRLTLPLGPVLFLADAKQL 75 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS-LLIVDECH 120 V Q E + ++V + QS+AR L + + L+IVDE H Sbjct: 76 VWQAAKSLTNWTGEPAAVEMADSHAQLGDRIVVATTQSIARRLKGWPQNYFYLVIVDEAH 135 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 R + Q Q +L H T + LG+TATPFR K + + Y + D Sbjct: 136 R--NTLGGQAQSVLPHFTTA----QTLGITATPFRSDKQELGNY-YQAIADCDA------ 182 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 L +I G+L+ +P + DF++++ G F++ DL L Sbjct: 183 -----GLIRLINEGWLSRITIKSVPAPEIDFTKIRTVK-GDFADTDLGAALNPHIDTLAR 236 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 I++ E A R+ V F E ++ V A + D E ++ F + Sbjct: 237 IVA---EHARDRRTV-AFLPLRETSRNFVAACNAIGLRAVHAD---GEDRAGLDAFARRD 289 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + + N ++LTTG+D P VD ++I RPT+S LY Q+VGRG R+ PGKT Sbjct: 290 YDIISNASLLTTGWDQPDVDCVSIFRPTKSFVLYSQMVGRGTRIHPGKT 338 >UniRef50_A4VH90 Type I restriction-modification system, R subunit n=2 Tax=Gammaproteobacteria RepID=A4VH90_PSEU5 Length = 1157 Score = 244 bits (623), Expect = 7e-63, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 165/475 (34%), Gaps = 95/475 (20%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL-VIAELARLAR----GRVLVLAH 57 LR YQ++AV ++ ++ + TG GK+ +I + R + R+L L Sbjct: 436 LKLRDYQEKAVQTVEQALANNQRDCLLAMATGTGKTRTIIGLMYRFLKAERFKRILFLVD 495 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ- 108 L Q + LE DI G E+ +V +VQ++ + Sbjct: 496 RSALGQQAIDSFNDTTLEQNHTLAQIYDIKELGDMAAEAETRVQVATVQAMVSRIFRSDT 555 Query: 109 ----GEFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRLLG 148 GEF +IVDE HR SQY+++L H +G Sbjct: 556 PPPVGEFDCIIVDEAHRGYTLDQEMTEGELAVRDHSQYLSQYRRVLDHFDAC-----RIG 610 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PPERLDMP 205 LTATP +F ++ R + +L PP R + Sbjct: 611 LTATP-----------------AKHTSEIFGKPVFTYSYREAVADDWLVDHEPPIRYETQ 653 Query: 206 VVQYDFSRLQAQS-------NGLFSEADLNREL------KKQQRITPHIISQIMEFAATR 252 + Q+ + +S G A+L EL ++ ITP I + A Sbjct: 654 LSQHGIRFEKGESVSVINTQTGEVDVAELEDELTFNIESFNRRVITPAFDKVICDELAKE 713 Query: 253 ------KGVMIFAATVEHAKEIVGLL------------PAEDAALITGDTPGAERDVLIE 294 + MIF HA+ + LL +ITG + E LI Sbjct: 714 LDPFGEEKTMIFCVNQAHAERVKNLLDEAFKTAYGEQYNEAAVRIITGQSDKVE--QLIR 771 Query: 295 NFKAQ-RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 +K + + V +LTTG D P + + +R S LY+Q+ GR R GKT Sbjct: 772 RYKNEPNPNIAITVDLLTTGIDVPKICNLVFMRRVRSRILYEQMKGRATRRCDDIGKTVF 831 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 I D L A + P K+ N+ ++ + + D + H Sbjct: 832 RIYDPVDLYASLEAVDTMKPLVKNPNISLEQLVSELASGASHDAPGSQDDSSHAH 886 >UniRef50_C4G600 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G600_ABIDE Length = 752 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 80/378 (21%), Positives = 151/378 (39%), Gaps = 59/378 (15%) Query: 34 GAGKSLV-IAELARLARGRVLVLAHVKELVAQNHAKY-QALGLEADIFAAGLKRKESHGK 91 G GK+ + G+ L + H + + Q + Y + G + KE Sbjct: 5 GTGKTYASAFAMKNEQPGKALFIVHRELIAKQAKSSYLRVFGNSKKLGLLSGSSKEYDAD 64 Query: 92 VVFGSVQSVARN--LDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLG 148 ++F ++ ++A+ +D ++ + F + +DE HR G + Y++I+ + NP G Sbjct: 65 ILFATMSTMAKADIMDKYRPDEFEWICIDEVHRAGAE---SYRKIMDYF---NPKF-WFG 117 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ 208 +TA+P R I++ H + YE+ L++ +K L P + ++ Sbjct: 118 MTASPERTDGFDIFKLFDH------------NIAYEIRLQHALKEDLLCPFHYFGITDIE 165 Query: 209 YDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ--IMEFAATRKGVMIFAATVEHAK 266 D + S +R + HI+ Q ++ R ++F + E AK Sbjct: 166 IDGEPINDNS----DVRAFSRLV--SDIRVDHILKQSEYYGYSGDRVKGLVFCSNKEEAK 219 Query: 267 EIVGLLPAED--AALITGDTPGAERDVLIE----NFKAQRF------------------- 301 E+ A++TG+ +R+ IE + Sbjct: 220 ELSKKFNQRGYYTAVLTGENTEKQRESCIELLVKDISDDEIEEHNTNIKNNIPVECTQMP 279 Query: 302 --RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 Y+ + + G D P ++ + +LRPTES ++ Q +GRGLR A K +++D+ GN Sbjct: 280 YLDYIFTIDIFNEGVDIPEINQVLMLRPTESPIVFVQQLGRGLRKANYKEYVVVIDFIGN 339 Query: 360 PHDLYAPEVGTPKGKSDN 377 + Y + KS N Sbjct: 340 YQNNYMIPIALSGDKSYN 357 >UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Tax=Clostridiaceae RepID=A6TLK4_ALKMQ Length = 1086 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 99/493 (20%), Positives = 176/493 (35%), Gaps = 96/493 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL-VIAELARLAR----GRVLVLAH 57 LR YQ +A++A K A++ + TG GK+ V+ + R + R+L L Sbjct: 375 LNLREYQIDAIEAAEKAIIEGKQTALLSMATGTGKTRTVLGMIYRFLKTGRFKRILFLVD 434 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q ++ + LE +I + + K+ +VQS+ + + Q Sbjct: 435 RSALGEQAQDVFKEVKLEDLMTLDEIYNIKNLEDRMIDKETKIQVATVQSLVKRILDNQD 494 Query: 110 -------EFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRL 146 ++ L+++DE HR DD S+Y+ ++ + V Sbjct: 495 ETMPSIIDYDLIVIDEAHRGYILDKEMDEDEILYRNQDDYISKYRAVIEYFDSVK----- 549 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV 206 + LTATP +F +Y R + GYL + V Sbjct: 550 IALTATP-----------------ALHTSEIFGKPVYNYTYREAVVEGYLVDHDAPHTIV 592 Query: 207 VQYDFSRLQAQ-----------SNGLFSEADLNRELKKQ-QRITPHIISQ------IMEF 248 + + + + + + +L ELK ++ +I++ ++E Sbjct: 593 TKLSKEGINYEKGETVAIYDPVTGEIMNSDELEDELKFDVEKFNRQVITESFNRTVLIEI 652 Query: 249 AAT-----RKGVMIFAATVEHAKEIVGLLPA---------EDAALITGDTPGAERDVLIE 294 + +I+A HA IV +L + ITG G + ++E Sbjct: 653 SKELDPEGEGKTLIYAVDDSHADLIVKILKEIFEPYGVDNDAIMKITGSVGGGNKKKVLE 712 Query: 295 ---NFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GK 348 FK +++ V V +LTTG D P + + +R +S L++Q++GR RL P GK Sbjct: 713 AVKRFKNEKYPNIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMMGRATRLCPEIGK 772 Query: 349 TDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 T I D G L P + + + T +I Sbjct: 773 THFEIYDPIGVYESLQPVNTMKPVVANPSTSFEDLLTGLEVLPTEKQIKNQIDMIIAKLQ 832 Query: 409 RRCQGWFEDDDGH 421 R+ + E H Sbjct: 833 RKKRSMNEKTMAH 845 >UniRef50_C1GNS0 GPI inositol-deacylase n=2 Tax=Leotiomyceta RepID=C1GNS0_PARBA Length = 1440 Score = 243 bits (620), Expect = 1e-62, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 133/335 (39%), Gaps = 33/335 (9%) Query: 38 SLVIAELARLAR------GRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHG 90 S+V +L + L++ H KELV Q E I G Sbjct: 10 SVVFTQLIDRIPPRNNIAKKTLIIVHRKELVEQAAKHCMLAYPEKTIEIEMGNCHATGTA 69 Query: 91 KVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHL---TKVNPHL 144 ++ S++S+ ++ F E + L++VDE H I Y+++L + Sbjct: 70 EITIASIRSLLSKGRIEKFDPERYKLILVDEAHHI---VAPSYREVLEYFGLNEVSEGSP 126 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM 204 L+G++AT R + H +Y MI +L Sbjct: 127 ALVGVSATFSRFDGLKLGTAIDH-------------IVYHKDYIDMIGERWLADA-VFTT 172 Query: 205 PVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEH 264 + D S + NG F L+ + + + + A+ RK ++F ++H Sbjct: 173 VNSRADLSNVADAPNGDFQTGQLSAAVNT-ATVNDITVRAWLSRASDRKSTLVFGVDIDH 231 Query: 265 AKEIVGLLP--AEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLI 322 K + DA IT T R +E F+ Q + LVN + T G D P++D + Sbjct: 232 VKCLTDTFRRFGIDARYITSQTRKNLRTEELEAFRNQEYPVLVNCGLFTEGTDIPNIDCV 291 Query: 323 AILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + RPT S +L Q++GRGLRL PGK +C I+D Sbjct: 292 LLARPTRSKNLLIQMIGRGLRLHPGKENCHIIDMV 326 >UniRef50_C4ZF20 Type I restriction-modification system R subunit (Endonuclease) n=22 Tax=Firmicutes RepID=C4ZF20_EUBR3 Length = 1116 Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 100/461 (21%), Positives = 162/461 (35%), Gaps = 72/461 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAH 57 T RPYQ+EAV A + +IV TG+GK+ V + + R +L LA Sbjct: 343 ITNRPYQKEAVTAVCDAITNKHRKMLIVQATGSGKTRVSISIVDVLRRHNYVKNILFLAD 402 Query: 58 VKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVARNLDA---------- 106 K LV Q Y L + K +++F + ++ +D Sbjct: 403 RKALVKQAKNNYTNLLPDLSCCNLLDNKDDPESCRMIFSTYPTMMNAIDERKNKYGEKLF 462 Query: 107 FQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 G F L+I DE HR +YQ+I + + LLG+TATP Y Sbjct: 463 SPGHFQLIICDEVHR---SIYKKYQEIFEYFDAM-----LLGMTATPKNEIDKNTYGVFD 514 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV------VQYD--FSRLQAQS 218 + L ++ GYL L+ + YD + + Sbjct: 515 LER---------GVPTFAYELEKAVEEGYLVNYSTLEYKSKIMESGIHYDELSDEEKEEY 565 Query: 219 NGLFSEAD----------LNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATV 262 FS+ D +N L I ++ ++ME +IFA Sbjct: 566 EDTFSDDDTVGDDISGEAVNTWLFNADTI-DKVLRELMEKGLKIEGGDKLGKTIIFAKNS 624 Query: 263 EHAKEIVG----LLPAEDAALITG-DTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFD 315 HA+ IV L P I D D LI+ F + V+V +L TG D Sbjct: 625 LHAQAIVKRFNKLFPEYGGDFIKRIDYSIKYSDSLIDEFSTSDKMPQIAVSVDMLDTGID 684 Query: 316 APHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEV 368 P + + + +S + + Q++GRG RL P K LI D+ N + Sbjct: 685 IPEILNLVFFKKVKSYAKFWQMIGRGTRLCPNLLGEGMDKERFLIFDFCNNFEYFRVNKN 744 Query: 369 GTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGR 409 G G ++++ +++ + + + + Sbjct: 745 GAENGITESLNEKIYNTKAQIVRELQAPVYSGDEIYADYRK 785 >UniRef50_A6FSI5 Helicase n=2 Tax=Roseobacter sp. AzwK-3b RepID=A6FSI5_9RHOB Length = 525 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 111/517 (21%), Positives = 176/517 (34%), Gaps = 76/517 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 LR YQ +A++A + RR ++ TGAGK+L A + R A R L + Sbjct: 13 IRLRDYQAQAIEALRDGIRRKLRRQILCATTGAGKTLTSAHMLREAAERGSYTLFIVDRL 72 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 LV Q A + G+ + R V S Q++AR + + L+IVDEC Sbjct: 73 ALVDQTSAVFDEYGIPHGVVQGDHPRWAPRENVQVCSAQTLARR--SLPRDPDLIIVDEC 130 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H + + + N ++GLTATPF G G Y Sbjct: 131 HVLYKNTR--------EFIEANSKAVVIGLTATPFTKGIGKQY----------------D 166 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF-SEADLNRELKKQQRIT 238 + +P R +I+ +L P + + S G F E + ++ + Sbjct: 167 GIVNVIPTRQLIEQEHLIEPTIYVAKSPED--AAFGLNSYGEFSDEGATSAGIEIIGDVV 224 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA---ALITGDTPGAERDVLIEN 295 ++ E ++F+ TVEH +++ A + D E+ I Sbjct: 225 SEWEAKTHEHFGGPVKTIVFSPTVEHGRKLCEAFAAAGYNFQQVSYMDRTDEEQREKIGK 284 Query: 296 FKAQR--FRYLVNVAVLTTGFDAPHVDLIAILRP-TESVSLYQQIVGRGLRLAP--GKTD 350 F+ + LV+ VLT GFD P V + +P +S+S + Q +GR +R GK Sbjct: 285 FRRPDSTIQGLVSCGVLTRGFDVPEVRIGISCKPYRKSLSSHMQEMGRVMRTHAESGKDK 344 Query: 351 CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRR 410 L LD++GN W D E + Sbjct: 345 ALWLDHSGNVERFALD-----------------------VYEVWEHGVGDLDKSEKQDSK 381 Query: 411 CQGWFEDDDGHRE--QCDFRFRFKNCPQCNAENDIAARRCRECDTVLV---------DPD 459 + E +C R C C E + + D L P Sbjct: 382 PRERNEQTREKVVCQECSGALRGNVCMACGWEKPARSNVVVK-DGELQAFDMAAAAMQPR 440 Query: 460 DMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITY 496 D L+A + V + + KGE + Sbjct: 441 DGLRADCLKEPRRVWE-APLRYTMASTRKGEEHARKW 476 >UniRef50_A5UR94 Type III restriction enzyme, res subunit n=5 Tax=Bacteria RepID=A5UR94_ROSS1 Length = 899 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 94/436 (21%), Positives = 159/436 (36%), Gaps = 69/436 (15%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------------RLARGR 51 R +Q+ A+ TL R + ++ + TG GK+ ++ + G+ Sbjct: 186 EPRYFQEAAIRETLVRVMRGQKRILLTMATGTGKTFTAMQIVWKLVKSGWLHQQKGRAGK 245 Query: 52 VLVLAHVKELVAQNHAKYQALGLEAD---IFAAGLKRKESHGKVVFGSVQSV-------A 101 +L LA + L Q + + + G +R + FG Q++ Sbjct: 246 ILFLADREVLRNQAYNAFSPFASDHGDPRFMLDGKRRLSLQYDLYFGIYQTLWATDPRGK 305 Query: 102 RNLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW 160 R + F +F ++IVDE HR G +++IL H LG+TATP + Sbjct: 306 RLFEQFPHDFFDVVIVDEAHRSG---FGTWKEILDHFESAIH----LGMTATPRQDENVD 358 Query: 161 IYQFHYHGMV------RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL 214 Y + + K + Y L I+ G+L + + + D L Sbjct: 359 TYAYFCAEEPAIPLDPQDPSKGVLHQAAYTYSLSQGIEDGFLATYKVHRV-LTSIDKDGL 417 Query: 215 ----------------QAQSNGLFSEADLNRELKKQQRITPHI--ISQIMEFAATRKGVM 256 A+ + + RE++ R + +++++ M Sbjct: 418 HISRVLEQGAEVIVPEDAKVREEYYTPNFEREIRLPDRTHTLVKHLAKLLRQFGPLHKTM 477 Query: 257 IFAATVEHAKEIVGLLPAEDAALITGDT--------PGAERDVLIENFKAQRFR---YLV 305 +F VEHA+E+ LL E A+L G G + + F+ + Sbjct: 478 VFCVDVEHAREVARLLNNEFASLGLGHDYAVPIVSEEGEQAQRWLNQFQDSDRKTPVVAT 537 Query: 306 NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDL 363 +L+TG D P I ++ S L++QI+GRG RL P GK I+DY N L Sbjct: 538 TAELLSTGVDVPACRNIVFMKTISSPILFKQIIGRGSRLDPATGKLWFRIIDYT-NATRL 596 Query: 364 YAPEVGTPKGKSDNVP 379 P P P Sbjct: 597 LDPRWDCPTRPVQVAP 612 >UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF9_9BACE Length = 1116 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 93/434 (21%), Positives = 157/434 (36%), Gaps = 77/434 (17%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAH 57 T R YQ+ +++ H+ A++V+ TG GK+ V L + VL LA Sbjct: 344 ITNRNYQKRVIESVCKHYNDKHRRALLVMATGTGKTRVSISLVDVLVRNNWVKNVLFLAD 403 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-----FQGEFS 112 ELV Q L + + + +++F + Q++ +LD G F Sbjct: 404 RIELVNQAKKNDTKLLPNMTVSSLRDSDVDISARILFSTYQTMIGHLDRDAKTFSLGRFD 463 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+I+DE HR +Y I + + LLGLTATP + + GM +G Sbjct: 464 LIIIDEAHR---SVFGKYGAIFEYFDCL-----LLGLTATP--RDEVDRSTYDLFGMEQG 513 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLD----MPVVQYDFSRLQAQSN--------- 219 + + GYL P + + D +L + Sbjct: 514 -------EPTDSYEYDEAVADGYLNPFRAIKDNSKILTTGIDPEQLTPEERKQLEEIFEY 566 Query: 220 -----GLFSEADLNRELKK--------QQRITPHIISQIMEFAATRK------GVMIFAA 260 GL + +R + Q H+++++M K +IFA Sbjct: 567 EKMKAGLEPDDPYSRTINATEIFKYIFNQNTVDHVLNRLMNDGIRVKDNTLIGKTIIFAY 626 Query: 261 TVEHAKEIVGLLPA-------EDAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVLT 311 +HA I A + +I + L++ F ++ + V+V +L Sbjct: 627 NHKHAVFIAERFAALYPDLGSDFCRVIDNYEKYS--SDLLDKFADVSKQPQIAVSVDMLD 684 Query: 312 TGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLY 364 TG D P + + +P S + Q++GRG RL K + LI D+ N Sbjct: 685 TGIDVPEIVNLVFFKPIHSKIKFWQMIGRGTRLCENLFGEGQHKKEFLIFDFYRNFEYFE 744 Query: 365 APEVGTPKGKSDNV 378 G KS ++ Sbjct: 745 MHPEGARPTKSQSI 758 >UniRef50_C6NXH3 Type III restriction protein res subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NXH3_9GAMM Length = 699 Score = 241 bits (616), Expect = 4e-62, Method: Composition-based stats. Identities = 109/384 (28%), Positives = 180/384 (46%), Gaps = 34/384 (8%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-----RLARGRVLVLAHVK 59 LRPYQ++AV A L R P ++ PTG GK++V+ EL+ + + +L+LAH Sbjct: 2 LRPYQEQAVSALLADARTGICPVGVI-PTGGGKTVVMRELSSRWLRQSPQDYLLLLAHRT 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 L+ Q ++ + ++ GL + G V S+Q++A + +SL++VDE Sbjct: 61 RLLTQAQERFAGVPVQVVSAGLGLFERPQPGTVTVASIQTLAGMPEIRDVPWSLVLVDEA 120 Query: 120 HRIG--DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 HR+G ++E QY+ L L ++G+TATP+R+ KG + + E ++ Sbjct: 121 HRVGMDNEESGQYRTFLDAL-AARSDPPIVGMTATPWRIEKGNRHVPIF------GEGSI 173 Query: 178 FRDCIYELPLRYMIKHGYLTPP------ERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 F+ + +I G+L P L VQ + + + + D Sbjct: 174 FQKASCWIHPDELIAQGFLLSPTLATVRHPLPATGVQLPHGEIATANVTDYKKTDF---- 229 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAER 289 I +++ R V++FA ++ + I L E A ++ G+ P + R Sbjct: 230 -------ALRIDEMVRLTQDRHRVLVFAESLSESAAIAKALELLGESACVLHGEHPESVR 282 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + IE F+A F+YLVNV V T G D P +D + + R T+SV Y Q+ GRGLR Sbjct: 283 NREIEKFRAGDFKYLVNVDVFTEGLDVPEIDAVVLHRRTQSVVRYLQMAGRGLRPGGRGA 342 Query: 350 DCLILDYAGNPHDLYAPEVGTPKG 373 DCLI+D+ + L E + Sbjct: 343 DCLIVDFGQHVERLGPIEAARGRN 366 >UniRef50_A9BYC8 Helicase domain protein n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BYC8_DELAS Length = 502 Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats. Identities = 98/451 (21%), Positives = 175/451 (38%), Gaps = 67/451 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAHVK 59 LR YQ +V+ + FR T V+ LPTG GKS V+ + + R++ + + Sbjct: 4 LVLRDYQVNSVEGLRDGFRAKHTRQVLTLPTGGGKSRVMEHMIHGVQAKGTRIMFVCERR 63 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 LV Q G++ + A R +V SVQ++ R + L+ +DE Sbjct: 64 VLVEQFSKHLDRAGIDHGVLMAKHWRFRPQCQVQIASVQTLERM--KTLPKVDLIFIDEV 121 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H +Q + +L P LR++G TATPF G F Sbjct: 122 HACM-------RQFVINLMLAQPDLRIIGATATPFHPALGRH----------------FT 158 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + + + + ++ G+L P V + ++ A G + + DL + + ++I Sbjct: 159 NVVSTITMSRLVDEGHLVPFRVFVAREVSTEGLKVVA---GEWKKDDLEQ---RGRQIVG 212 Query: 240 HIISQIMEFA----ATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDVLI 293 +++ + + + + F+ VEH E+ +A I+ + RD ++ Sbjct: 213 DVVADYVRISHEVFGEYRKTICFSCGVEHGAELAQRFIDAGVNAVQISSEDAEEYRDQVL 272 Query: 294 ENFKAQ--RFRYLVNVAVLTTGFDAPHVDLIAILRP-TESVSLYQQIVGRGLRLAPGKTD 350 E F + +++VA+L+ GFD V+ + + RP +S S + Q+VGRG R GK Sbjct: 273 EEFARPDTDLKVVISVAILSRGFDQTDVEHVILARPLKKSFSEHVQMVGRGARPHAGKQF 332 Query: 351 CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRR 410 C+I D++GN + F + G + R+ Sbjct: 333 CVIQDHSGNWLRFQED----------------------WEKLFNDGVESLGPGTDTKPRK 370 Query: 411 CQGWFEDDDGHREQCDFRFRFK--NCPQCNA 439 E + +C + K C C Sbjct: 371 EPTPKEKEAAKCPKCSAFWPPKTDTCSNCGH 401 >UniRef50_C4V188 Putative uncharacterized protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V188_9FIRM Length = 760 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 89/408 (21%), Positives = 162/408 (39%), Gaps = 51/408 (12%) Query: 6 RPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAEL----ARLARGRVLVLAHVKE 60 +Q +A+ A + + ++VLPTG GK+ + A + ++L LAH + Sbjct: 26 YRHQLDALCALDRMDEENASYSTLVVLPTGGGKTYTASTWLLRHALDKKKKILWLAHRQM 85 Query: 61 LVAQNHAKYQALGLEADI---------FAAGLKRKE------SHGKVVFGSVQSVAR--N 103 L+ Q +Q A+I +G + ++ S S+ R N Sbjct: 86 LLDQAAESFQKFAYTAEIPHISSFRYRIVSGSSNHDKTINIDPKDDLLIISKDSIGRASN 145 Query: 104 LDAFQGEFS-----LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGK 158 L + LIVDE H Y++++ ++ H++L+GLTATPFR + Sbjct: 146 LARLAPWLAGENEIFLIVDEAHH---STAKTYRRVIDYVKDKVEHVKLIGLTATPFRTAE 202 Query: 159 ---GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-----YD 210 G + + + G+ G K Y++ L+ +I L+ P + Sbjct: 203 NEQGLLARIYKDGVSGGRSKKNDIGIAYKVDLKELINRQILSHPHFETYYTDEEYGKDLG 262 Query: 211 FSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVG 270 L++ + +L++ + + I+ ++ A ++FA ++HA + Sbjct: 263 LEALESIQHLDTLSPELSQSIAESGPRNKLIVDTYLKKADEYGKTIVFAVNIDHAIALAK 322 Query: 271 LLPAED--AALITG---------DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHV 319 L A + E D +E F++ LVNV +LT G D P Sbjct: 323 LFNKAGIKAEYVVSAIKDMGTGATISPKENDSKLEAFRSGDVEVLVNVNILTEGVDLPMT 382 Query: 320 DLIAILRPTESVSLYQQIVGRGLR--LAPGKTDCLILDYAGNPHDLYA 365 + + RPT S L Q++GR LR A G + I+ + + ++ A Sbjct: 383 KTVFLARPTVSTILMTQMIGRALRGEKAGGTSMAYIVSFVDDWNEHIA 430 >UniRef50_B3JH18 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JH18_9BACE Length = 458 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 108/378 (28%), Positives = 185/378 (48%), Gaps = 24/378 (6%) Query: 2 IFTLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 + TLR Q E ++ + F K P++IVLPT GKS++ A +A+ + +++VL KE Sbjct: 1 MITLRENQTEPINKAIQFFTEKKPKPSLIVLPTAWGKSILTAFVAKNSNDKMIVLQPSKE 60 Query: 61 LVAQNHAKYQA----LGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG-EFSLLI 115 L+ QN+ KY + L A I++A RK + + ++ S+ F+ F+ ++ Sbjct: 61 LLEQNYLKYCSLCGNFALNAGIYSASFGRK-DIAHITYATIGSIKSLGAKFKSLGFTKML 119 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPF-----RLGKGWIYQFHYHGMV 170 +DE H + +S +L K + +LG+TATP R G + Sbjct: 120 IDEAHLYPREADS----MLGRFLKESGITHVLGITATPVKLQTNRDKDGQNFSKLVMLTS 175 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG-LFSEADLNR 229 R + F++ I+ + M++ G+ +P + +D S L S+ ++E + R Sbjct: 176 RSKKGNFFKEIIHVGQVAEMVRLGFWSPLQY---ETTGFDSSLLVFNSSKSEYTEESVQR 232 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAER 289 + I+ Q ++ + R+ +++F +VE A + P ++A+I G+ ER Sbjct: 233 AYDANGG-SEQIV-QALDRHSDRRHILVFVPSVEDAITLSKKYP--NSAVIYGEMDKTER 288 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 +I F+A R + NV VL+TGFD +D I + T S++LY QI+GR R+ P KT Sbjct: 289 SQVITRFRAGEIRVIFNVRVLSTGFDYTGIDCIVLGVSTASIALYYQIIGRATRIDPEKT 348 Query: 350 DCLILDYAGNPHDLYAPE 367 D LI+D GN E Sbjct: 349 DALIVDLGGNVERFGRVE 366 >UniRef50_C7BL24 Putative helicase n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BL24_PHOAA Length = 521 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 98/446 (21%), Positives = 176/446 (39%), Gaps = 72/446 (16%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQQE D + +I L TGAGK+ + A L A + ++AH L+ Sbjct: 1 MKLRDYQQEIFDLITSATTND----LIQLDTGAGKTPIEAALCGWAEHSI-IVAHRNILI 55 Query: 63 AQNHAKYQALGLEADIFAAGLKRKE---------------SHGKVVFGSVQSVARNLDAF 107 +Q K A G+ D + R+ + K + S+ S+ Sbjct: 56 SQCSEKLAAFGIMHDTISTEHTRRRCMLAHKKHGKNFISRGNKKTLVASIDSLISRYKRG 115 Query: 108 QGEFS-----LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY 162 + + L+++DE H I D +++ +L + R++G TATP R+ + Sbjct: 116 KLDLDTHLSWLIVIDEAHHIVPD--NKWGDLLDIF----HNSRVIGFTATPGRMDGQSLS 169 Query: 163 QFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF 222 + +K + + + + + +I L+ + + R + +S+ L Sbjct: 170 RKKGGVF----DKLVQCEYLKDNSISKLISKNILSGFKFYSPEFYETS-HRHRIRSDTLL 224 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALI 280 D I +F R+ +M+ AT+++A+E L A I Sbjct: 225 IANDP--------------IKIYKKFMNNRRTIMM-CATIKNAEEHAILFRDAGISAGCI 269 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 + + +I+ F A + + L NV ++ GFD P VD + + R T+S +Y+Q +GR Sbjct: 270 SSNMSAVNVSRIIDLFSAGKIKVLCNVDMVGEGFDLPAVDGLIMARQTKSFIMYRQWIGR 329 Query: 341 GLRLAPGKTDCLILDYAGNPHDLYAP------EVGTPKGKSDNVP-------------VQ 381 LR PGK +I+D GN +D P ++ P + + Sbjct: 330 ALRTNPGKDIAIIVDLVGNANDHGYPDDNIIWDIDNPPHTPSAIKNAPCRYCGFWYPIID 389 Query: 382 VFCPACGFANTFWGKTTADGTLIEHF 407 ++CP CG N + + E + Sbjct: 390 MYCPDCGEENILHNRRQSITPYKEIY 415 >UniRef50_C7GDQ4 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=C7GDQ4_9FIRM Length = 1091 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 100/488 (20%), Positives = 166/488 (34%), Gaps = 99/488 (20%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL-VIAELARLAR----GRVLVLAH 57 LR YQ A+ A K ++ + TG GK+ V+ + R + R+L L Sbjct: 376 LNLREYQLNAIKAAEQSVIEGKKNILLAMATGTGKTRTVLGMIYRFLKTNRFKRILFLVD 435 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q ++ + LE +I K + ++ +VQS+ + + G Sbjct: 436 RTSLGEQAADVFKEVKLEDLMTLDEIYNIKGFEEKNIDKETRIQVATVQSMVKRILYNDG 495 Query: 110 -------EFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRL 146 ++ L+I+DE HR D +S+Y+ ++ + V Sbjct: 496 EIMPAVTDYDLVIIDEAHRGYILDKEMGDTEILYRDQRDYQSKYRSVIEYFDAVK----- 550 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP---PERLD 203 + LTATP +F +++ R + GYL P L+ Sbjct: 551 IALTATP-----------------ALQTTEIFGQPVFKYTYREAVIEGYLVDHDAPHHLE 593 Query: 204 MPVVQ-------------YD-FSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIM--- 246 + YD + S L E D + E +Q IT + ++ Sbjct: 594 TKLSTGGIHYKSGDTVMIYDPVTGEITNSELLVDELDFDVEQFNRQVITENFNKTVLSEI 653 Query: 247 ------EFAATRKGVMIFAATVEHAKEIVGLLP---------AEDAALITGDT---PGAE 288 E + +I+A +HA IV +L E ITG + Sbjct: 654 ARDIDPENPEEQGKTLIYAVDDQHADMIVSILRDIYSKYGVSNEAIMKITGSVGGGNPKK 713 Query: 289 RDVLIENFKAQRFR-YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP- 346 I+ FK + + V V +LTTG D P + + +R +S L++Q++GR RL P Sbjct: 714 VQEAIKCFKNENYPSIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMLGRATRLCPK 773 Query: 347 -GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 KT I D G L P + N +I Sbjct: 774 IHKTHFEIYDPVGVYDSLNDVNTMKPVVVNPTTSFTQLLDGLSEINDDKQTEQQITQIIA 833 Query: 406 HFGRRCQG 413 R+ + Sbjct: 834 KLQRKKRN 841 >UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax=Gammaproteobacteria RepID=A6W081_MARMS Length = 1133 Score = 241 bits (614), Expect = 8e-62, Method: Composition-based stats. Identities = 93/428 (21%), Positives = 157/428 (36%), Gaps = 71/428 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVKE 60 R YQ A+ + + F+ + A+I+ TG GK+ V LA L RVL L KE Sbjct: 364 RLYQINAIKSVAHTFQEQRRKALIIQATGTGKTRVSIALADLMLNAGWAKRVLFLCDRKE 423 Query: 61 LVAQNHAKYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q ++ L E + + + ++ + + G F L+I DE Sbjct: 424 LRTQASEAFKNNLPSEPRCEIGETNKIDENARIYVSTYPGMMNRFAQLDVGFFDLIIADE 483 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR ++Y+ I + + +GLTATP + + Sbjct: 484 SHR---SIYNRYRDIFDYFDALQ-----VGLTATPVKFISRNTFDMFGCETT-------- 527 Query: 179 RDCIYELPLRYMIKHG--YLTPPERLDMPVV------------------QYDFSRLQAQS 218 D Y+ L+ I+H YL + D+ D Sbjct: 528 -DPTYQFGLKEAIEHEPPYLVDFKVKDVTTEFLRDGIHYNDLTDDQKRQLEDDLGFDEAQ 586 Query: 219 NGLFSEADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKEIVGLL 272 N + D+ R++ ++ I+ +M + + ++FA +HA+ + L Sbjct: 587 NASYQGKDIGRKIF-SEKTDQEILENLMNYGIKDETNSLVGKTIVFANNQKHAEHLEKLF 645 Query: 273 P-------AEDAALITGDTPGAERDVLIENFKAQ--RFRYLVNVAVLTTGFDAPHVDLIA 323 + +I E LI+ FK FR ++V +L TG D P V + Sbjct: 646 CKLYPQYGNKVCKVIHNKVSHVE--SLIKEFKKGDNEFRIAISVDMLDTGIDVPEVVNLV 703 Query: 324 ILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 + +S + Q++GRG RL KT+ LI D+ GN + + E P+ Sbjct: 704 FAKTVKSSVKFWQMIGRGTRLCKNLFGKGKDKTEFLIFDHYGNF-EFFEQEYKEPQDVG- 761 Query: 377 NVPVQVFC 384 P+ C Sbjct: 762 GKPLLQTC 769 >UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN84_SULIN Length = 763 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 152/393 (38%), Gaps = 57/393 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLAR----GRVLVLAH 57 LR YQ+ AV + F K ++ + TG GK+ +V+A +A+L VL L Sbjct: 141 LDLRNYQKIAVQQIITSFLSGKKRMLVEMATGTGKTEVVMAAIAKLLDEGKVKNVLYLVD 200 Query: 58 VKELVAQNHAKYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA---FQGEFSL 113 L Q + ++ A LG + +I + ++ +VQ + + F L Sbjct: 201 RDSLATQTYQRFNARLGDKYNIRKLSGDINDLSADIIISTVQMLYVDEKFKLFNSDHFQL 260 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE HR + +++ + K +LGLTATP D Sbjct: 261 IVLDEAHR---SYYGDWHKVVQYFNKAA----VLGLTATPKIDKD-------------VD 300 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 A F I+ +K GYL + D + F DL +++ Sbjct: 301 NFAYFGYPIFRYTYSRGVKDGYLADTIYYKF-LTNVDIYGIH-DLGYDFDPNDLGKKVDI 358 Query: 234 QQRITPHIISQIMEF-----AATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAE 288 R I + E K ++FAA+++HA+ + + L+ AE Sbjct: 359 PMR-NELIAEKYFEAINFKETKELKKAIVFAASIKHAENLRLAFIRKYNELMGYSPDNAE 417 Query: 289 RDVL--------------IENFK--AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVS 332 + + + F+ R + V +L+TG DAP V++I + RPT+S Sbjct: 418 AEEIFRSIHSAIPNHEELVREFQSPNSRIKVAFTVDLLSTGVDAPDVEVIVMARPTKSRV 477 Query: 333 LYQQIVGRGLRLAPG----KTDCLILDYAGNPH 361 LY Q+ GRG R+ K ++D+ Sbjct: 478 LYLQMKGRGTRIYKEGNKVKDKFYLIDFVDTWR 510 >UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XDR7_MYCFE Length = 808 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 81/423 (19%), Positives = 168/423 (39%), Gaps = 72/423 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAHVKE 60 R YQ+ A++ T++ + K ++V+ TG GK+ V ++ + ++L LA Sbjct: 179 RYYQKRAINDTVDAVAKGKDRILLVMATGTGKTYVAFQIIWRLWKSGLKKKILYLADRNI 238 Query: 61 LVAQN-HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQ---------SVARNLDAFQGE 110 L+ Q ++ + + + ++ ++ Q S+ + ++F+ + Sbjct: 239 LIDQTIIGDFKPF--KNSMVKVSKRNMDTSYEIYLSLYQQLSENGSEDSLKKLKESFKPD 296 Query: 111 -FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 F L+IVDECHR E+S++++IL + +GLTATP + + Sbjct: 297 FFDLIIVDECHRGSASEDSKWREILNYFDSATK----IGLTATPKETAEVSNIDY----- 347 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPER----LDMPVVQYDFSRLQAQSNG----- 220 F + IY L+ I+ GYL P + ++ V Y + + G Sbjct: 348 --------FGEPIYTYSLKEGIEDGYLAPYKVVKFGINTDVFGYRPEKDKRDKYGEIVED 399 Query: 221 -LFSEADLNRELKKQQRITPHIISQIMEFAATRK----GVMIFAATVEHAKEIVGLLPAE 275 ++ D ++ + ++R T + +I ++ + ++F +EHA+ + L Sbjct: 400 NEYNVKDFDKTIVIEER-TKEVAKKITDYLKSINNRYAKTIVFCDDIEHAERMRQALVHY 458 Query: 276 DAALITGDT--------PGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDLIAI 324 ++ ++ D E ++NF + ++TTG + +IA+ Sbjct: 459 NSDMMAKDHRYIVRITGDNEEGKKQLDNFIDDNELYPTIVTTSELMTTGVNCKLCRVIAL 518 Query: 325 LR--PTESVSLYQQIVGRGLR---------LAPGKTDCLILDYAGNPHDLYAPEVGTPKG 373 ++ ++QI+GRG R K ILD+ P+ P Sbjct: 519 DNTFGENGMTKFKQIIGRGTRIKEFDDPKDKHKNKLYFTILDFKNATKLFADPDFNGPAI 578 Query: 374 KSD 376 + + Sbjct: 579 QEE 581 >UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax=Haemophilus parasuis 29755 RepID=B0QS40_HAEPR Length = 1121 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 104/495 (21%), Positives = 173/495 (34%), Gaps = 104/495 (21%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLA 56 LRPYQ++A+ A + K ++ + TG GK+ I L R+L L Sbjct: 401 FLGLRPYQEKAIQAVEQNLSEGKREMLLAMATGTGKTRTITGLIHRFLKTDRFRRILFLV 460 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESHG------KVVFGSVQSVARNL-----D 105 L Q + + +E + L +G KV +VQS+ + + Sbjct: 461 DRTALAEQAEDTFGGMNVEPNQTLNTLYNFAVNGVVEPETKVKVATVQSLVKQIFYSGEA 520 Query: 106 AFQGEFSLLIVDECHRI----------------GDDEESQYQQILTHLTKVNPHLRLLGL 149 +F +IVDE HR + S Y+++L + V +GL Sbjct: 521 PAIDQFDCIIVDEAHRGYTLDQEMTDGELEFQDNEQYLSTYRRVLDYFDAVK-----IGL 575 Query: 150 TATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PP------- 199 TATP K +F + ++ + + YL PP Sbjct: 576 TATP-----------------ALHTKEIFGEPVFVYSYKEAVIDDYLVDHEPPIEIKTKL 618 Query: 200 -------------ERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ--RITPHIISQ 244 E +D + S L + N F NR + ++ ++ Sbjct: 619 NQDGIHFERGEQLEFIDTSTGEVVLSELADEQN--FDVESFNRTVLNDSFNQVVCEVLLD 676 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLL------------PAEDAALITGDTPGAERDVL 292 ++ + + +IF AT HA +I G+L A ITG + L Sbjct: 677 YLDPFGS-EKTLIFCATDLHADKIKGILDTLFKQKYGDEYNTNSVAKITGQADKP--NTL 733 Query: 293 IENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKT 349 I+ FK +R+ + V +L+TG D P + + LR +S LY+Q+ GR R GK+ Sbjct: 734 IKYFKNERYPNIAITVDLLSTGIDVPEICNLVFLRRVKSRVLYEQMKGRATRKCEALGKS 793 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACG-----FANTFWGKTTADGTLI 404 I D G + + + P K+ + P+ NT L+ Sbjct: 794 VFHIYDAVGLCRAMASVDTMKPIVKNVHQPISQLVEELQAVGKIENNTNPLANEHQQALL 853 Query: 405 EHFGRRCQGWFEDDD 419 E ++ D Sbjct: 854 EQISQKIMRLLRKAD 868 >UniRef50_Q4HNM6 Type I restriction-modification system, R subunit n=1 Tax=Campylobacter upsaliensis RM3195 RepID=Q4HNM6_CAMUP Length = 813 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 93/417 (22%), Positives = 164/417 (39%), Gaps = 59/417 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG----------RVL 53 T R YQ A++A L ++ ++ ++VL TG GK+L+ ++A ++L Sbjct: 168 TPRYYQNNAINAALIATQKGQSRILLVLATGTGKTLIAYQIAHRLFNQTLPNGKKIEKIL 227 Query: 54 VLAHVKELVA-QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-- 110 LA EL+ +++ I+ + +S + FG Q + + Sbjct: 228 YLADRNELINTDTTRTFKSFA--KGIYKIENRNFKSGYSLYFGIYQQFISGSEENNDKKE 285 Query: 111 ---------FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATP-FRLGKGW 160 F L+ +DECHR +S +++IL + +G+TATP + + Sbjct: 286 HYKALKPDFFDLIFIDECHRGSARADSTWREILEYFNSALQ----IGMTATPKYNKEQRE 341 Query: 161 IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD----------MPVVQYD 210 + D F + +Y+ L+ I GYL P ++ P + Sbjct: 342 SQEAGELEKRDDDNIDYFGEPVYQYSLKQGIDDGYLAPFSVIENLSNIEMQGYTPELGKR 401 Query: 211 FSRLQAQSNGLFSEADLNRE--LKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAK 266 + F+ D NR LK Q R +S+ + +IF HA Sbjct: 402 DEEGREIPQETFNSPDFNRTIYLKPQIRFVAKKVSKFLHHTLKNPYAKTIIFCEDQRHAL 461 Query: 267 EIVGLLPAEDAALITGDTPGAER--------DVLIENFK--AQRFRYL-VNVAVLTTGFD 315 + L E+ + D+ R L++NFK ++R+ + +L+TG D Sbjct: 462 LMKDALQDENKQEVAKDSNYITRITSDDDKGKALLDNFKSVSKRYPVIATTSQLLSTGVD 521 Query: 316 APHVDLIAILRPTESVSLYQQIVGRGLRL-----APGKTDCLILDYAGNPHDLYAPE 367 V +I I + SL++Q++GRG RL + GKT +LD+ G + Sbjct: 522 TQMVQVIVIDKIVRDKSLFKQMIGRGTRLNEVLESKGKTHFYVLDFKGIAREFLNDP 578 >UniRef50_B6R0S4 Type III restriction enzyme, res subunit family n=5 Tax=Alphaproteobacteria RepID=B6R0S4_9RHOB Length = 1131 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 108/494 (21%), Positives = 174/494 (35%), Gaps = 99/494 (20%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSL-VIAELARLAR----GRVLVLAHV 58 +LRPYQ+EA+DA K ++ + TG GK+ IA + RL + R+L L Sbjct: 420 SLRPYQEEAIDAVEKEIAGGKRSVLVAMATGTGKTRTCIALMYRLLKTKRFKRILFLVDR 479 Query: 59 KELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE 110 L Q E ++ K + ++ +VQS+ ++ + Sbjct: 480 TALGDQTTDALNTTEFEGFYKFSQIYNVAGLDQKLPDDATQIHVATVQSLVARINNTEDP 539 Query: 111 --------FSLLIVDECHRIGDDEE----------------SQYQQILTHLTKVNPHLRL 146 + +++DE HR + S Y+ +L++ V Sbjct: 540 KERLTPGMYDCIVIDEAHRGYTLDADLKEGEENYRDVSAYESAYRNVLSYFDAVK----- 594 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PPERL- 202 +GLTATP H + D Y R + G+L PP+R+ Sbjct: 595 IGLTATP-----------ALHTLQIFDC----EKPSYSYGYRQAVVEGFLIDHLPPKRIT 639 Query: 203 -------------------DMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ--RITPHI 241 D + L + + A NR + + RI Sbjct: 640 TALAEAGITFNGGEDVEIVDRHTGEVTLHNLPDEVELEYDLAKFNRRVYSENFNRIVCQT 699 Query: 242 ISQIMEFAATRK-GVMIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDV 291 I+ E A +IFAAT HA +IV LL E + ++ + Sbjct: 700 IAN--EIAPDAPGKTLIFAATDTHADDIVRLLKEELREEYGDLHNDMVMKITGSVRDAKG 757 Query: 292 LIENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GK 348 LI+ F+ +Y+V V +LTTG D P + + +R +S LY Q++GR RL P GK Sbjct: 758 LIKKFRNDPLPKYVVTVDLLTTGVDIPVLANLVFVRRVKSRILYDQMIGRATRLCPEIGK 817 Query: 349 TDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 + I D +L P N+P+ A + G ++ Sbjct: 818 QNFRIFDAVDLYAELQQMSDMRPVVVKPNMPLVELIADLDRAPNAEEENWVAGQVVVKM- 876 Query: 409 RRCQGWFEDDDGHR 422 R D+ G Sbjct: 877 -RALAKRMDEAGRE 889 >UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax=Gammaproteobacteria RepID=A0KWT8_SHESA Length = 1138 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 93/413 (22%), Positives = 149/413 (36%), Gaps = 75/413 (18%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 R YQ E + F + A++V TG GK+ V LA+ R+L L KE Sbjct: 362 RRYQLETISRVHETFELKRRKALVVQATGTGKTRVSIALAKSLMDAKWVKRILFLCDRKE 421 Query: 61 LVAQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q + Q LG++ + K+ + +V + + + F G F L+I DE Sbjct: 422 LRKQADKAFVQFLGVKPYVVGKSDKKYKDTARVFIATYPGMMGIYEDFDVGYFDLIIADE 481 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR + + + + + +GLTATP + + Sbjct: 482 SHR---SIYNVFGNLFKYFDCLQ-----VGLTATPVEMVSRSTCNLFDCD---------Y 524 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVV------------QYDFSRLQAQSNG----LF 222 ++ PL I G+L P E + M + L+AQ F Sbjct: 525 KEPTANYPLEKAIGEGHLVPFEIVTMTTKFMREGMNQRSLSDEQIAELEAQGEDPNEFEF 584 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKEIVGLLPAE- 275 A+++ + + I+ +ME K +IFA + HA+ + L Sbjct: 585 ESAEIDNAVLNKDT-NRKILRNLMENGIKDKDNQLIGKSIIFARKINHARLLKELFDEMY 643 Query: 276 ------DAALITGDTPGAERDVLIENFK------------AQRFRYLVNVAVLTTGFDAP 317 +I + P AE LI+ FK ++V +L TG D P Sbjct: 644 PELSQGFCEVIHSEEPRAE--ALIDQFKITEEEKAKDSSLPDPITLAISVDMLDTGIDVP 701 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDL 363 V + +P +S + Q++GRG RL KT LI D+ N Sbjct: 702 SVVNLVFAKPVKSKVKFWQMIGRGTRLCEDLFGKGKHKTRFLIFDHWNNFDYF 754 >UniRef50_C6VL05 Helicase-like protein:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like protein n=6 Tax=Lactobacillus RepID=C6VL05_LACPJ Length = 419 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 165/399 (41%), Gaps = 63/399 (15%) Query: 41 IAELARLA---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSV 97 +A++AR A RVL + + +E++ Q +++ + + G V Sbjct: 1 MADIARRATAKGNRVLFIVNRREILEQAENTFKSDDVNMSLCKMG-------------MV 47 Query: 98 QSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLG 157 Q++ R++D + +++++DE H YQ+I+ P L TATP+R+ Sbjct: 48 QTITRHIDEL-TKPAIIMIDEAHHA---LSKSYQRIIQAF----PDALKLLFTATPWRMD 99 Query: 158 KGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQ 217 + + D I P+ +I G+L P + + D ++L+ + Sbjct: 100 GKGL-------------NVIADDLIMGKPISELINQGFLAPVDYYAPS--EIDVTQLKTK 144 Query: 218 SNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED- 276 NG F E +++ +K +I + + ++ A ++ + +A V A+ + Sbjct: 145 RNGEFDEKSIDQAVK--PKIYGNAVRHYLKLAPGKQAI-AYAYNVASAERLAEAFNQAGI 201 Query: 277 -AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 A ++G T A R ++ +++A + + + N + T G D P+VD + +LRPT+S+SLY Sbjct: 202 TARAVSGKTDRAARKRIVADYRAGKIQVVTNAELFTEGLDLPNVDCVIMLRPTQSLSLYL 261 Query: 336 QIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTP---------KGKSDNVPVQ--VFC 384 Q R + GK +I+D+ N P + S+ P++ C Sbjct: 262 QFAMRSMNPREGKR-AIIIDHVNNVERFGLPTIDRQWILSGRDKHSKSSNGSPIKSVSVC 320 Query: 385 PAC-------GFANTFWGKTTADGTLIEHFGRRCQGWFE 416 P C G F G + +IE E Sbjct: 321 PECFATFYRKGKTCPFCGAELGEEKIIETDESIKLKKIE 359 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobac... 716 0.0 UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax... 608 e-172 UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax... 608 e-172 UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Ta... 594 e-168 UniRef50_B5JP68 Type III restriction enzyme, res subunit family ... 587 e-166 UniRef50_Q5G7M7 Putative helicase n=1 Tax=Listonella phage phiHS... 423 e-117 UniRef50_A0LBR5 Type III restriction enzyme, res subunit n=3 Tax... 410 e-113 UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax... 382 e-104 UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=P... 369 e-100 UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vade... 362 2e-98 UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1... 358 3e-97 UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=D... 354 7e-96 UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax... 353 2e-95 UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcu... 351 4e-95 UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax... 351 5e-95 UniRef50_B5ZFR8 Type III restriction protein res subunit n=1 Tax... 349 1e-94 UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM... 349 2e-94 UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax... 348 4e-94 UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax... 347 6e-94 UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida... 347 7e-94 UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Prop... 346 2e-93 UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q... 346 2e-93 UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax... 346 2e-93 UniRef50_A9DEN3 NTP dependent helicase n=1 Tax=Yersinia phage PY... 345 3e-93 UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax... 343 9e-93 UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cel... 343 1e-92 UniRef50_A5A3T1 BcepGomrgp42 n=1 Tax=Burkholderia phage BcepGomr... 343 1e-92 UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA ... 342 2e-92 UniRef50_A3JKG0 Putative ATP-dependent helicase n=1 Tax=Marinoba... 342 3e-92 UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax... 342 3e-92 UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5... 341 3e-92 UniRef50_B1MAA8 Type III restriction protein res subunit n=1 Tax... 341 5e-92 UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum '... 341 5e-92 UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida... 340 8e-92 UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talarom... 340 1e-91 UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax... 339 1e-91 UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida... 339 2e-91 UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax... 339 2e-91 UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococ... 339 2e-91 UniRef50_A6LX80 Type III restriction protein, res subunit n=15 T... 338 5e-91 UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax... 337 6e-91 UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicil... 336 1e-90 UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum... 336 1e-90 UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobact... 336 2e-90 UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pe... 335 2e-90 UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IP... 334 4e-90 UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii Re... 334 4e-90 UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax... 334 7e-90 UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6... 333 9e-90 UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax... 333 1e-89 UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax... 333 1e-89 UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax... 332 2e-89 UniRef50_D1WDT8 51.5 kDa protein n=5 Tax=Lactobacillus RepID=D1W... 332 2e-89 UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobaci... 332 2e-89 UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax... 332 2e-89 UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilag... 331 5e-89 UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=... 331 5e-89 UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=L... 331 6e-89 UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleo... 329 1e-88 UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM... 329 2e-88 UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax... 329 2e-88 UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax... 329 2e-88 UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax... 329 2e-88 UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia... 328 3e-88 UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6... 327 6e-88 UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax... 327 6e-88 UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Ta... 327 7e-88 UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase ir... 327 7e-88 UniRef50_B1M5E1 Helicase domain protein n=8 Tax=Alphaproteobacte... 327 9e-88 UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Sac... 326 1e-87 UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax... 326 1e-87 UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=L... 326 1e-87 UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepI... 326 1e-87 UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 ... 326 2e-87 UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax... 325 2e-87 UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like prot... 325 2e-87 UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax... 325 3e-87 UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Gro... 324 5e-87 UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type ... 324 5e-87 UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax... 324 6e-87 UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Loddero... 324 6e-87 UniRef50_C4WDM0 Phage DNA/RNA helicase n=1 Tax=Staphylococcus wa... 323 9e-87 UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisi... 323 1e-86 UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax... 323 1e-86 UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B... 323 2e-86 UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta Rep... 322 2e-86 UniRef50_C4L054 Type III restriction protein res subunit n=70 Ta... 321 3e-86 UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collins... 321 4e-86 UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae AT... 321 4e-86 UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebact... 321 4e-86 UniRef50_B7XGM0 Helicase n=3 Tax=Pseudomonas RepID=B7XGM0_PSEPU 321 5e-86 UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Ta... 321 5e-86 UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax... 321 5e-86 UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Ba... 321 5e-86 UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO 321 6e-86 UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria Rep... 320 7e-86 UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=P... 320 8e-86 UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis R... 320 8e-86 UniRef50_Q6J7X8 Pas53 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q... 320 1e-85 UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma l... 319 1e-85 UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=... 319 1e-85 UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococ... 319 2e-85 UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax... 319 2e-85 UniRef50_B8I140 Type III restriction protein res subunit n=16 Ta... 318 3e-85 UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax... 318 4e-85 UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax... 318 4e-85 UniRef50_C1I4L0 Superfamily II DNA/RNA helicase n=6 Tax=Clostrid... 318 4e-85 UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bac... 317 7e-85 UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID... 317 8e-85 UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=... 317 9e-85 UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodi... 316 1e-84 UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14J... 316 1e-84 UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax... 316 2e-84 UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobac... 316 2e-84 UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filob... 315 3e-84 UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococ... 315 3e-84 UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B... 315 3e-84 UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus aci... 315 3e-84 UniRef50_B1XQS3 Putative uncharacterized protein n=1 Tax=Synecho... 315 3e-84 UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasma... 315 4e-84 UniRef50_Q04L29 Type I restriction-modification system, R subuni... 314 5e-84 UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=... 313 1e-83 UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 313 2e-83 UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11... 313 2e-83 UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepI... 312 2e-83 UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemol... 312 3e-83 UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae... 311 4e-83 UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=... 311 6e-83 UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax... 310 8e-83 UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax... 310 1e-82 UniRef50_Q0AZK4 Type I restriction-modification system R subunit... 310 1e-82 UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=F... 309 1e-82 UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1... 309 1e-82 UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=... 309 2e-82 UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malasse... 309 2e-82 UniRef50_B9CV28 Phage deah-family helicase n=1 Tax=Staphylococcu... 309 2e-82 UniRef50_D2RKS9 Type III restriction protein res subunit n=2 Tax... 308 4e-82 UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0... 308 5e-82 UniRef50_Q9T1H9 Putative DEAH-family helicase n=1 Tax=Lactobacil... 308 5e-82 UniRef50_A0L703 Type III restriction enzyme, res subunit n=13 Ta... 307 7e-82 UniRef50_Q043T1 Type I site-specific restriction-modification sy... 307 8e-82 UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=C... 306 1e-81 UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=... 306 2e-81 UniRef50_Q3V5F4 Gp41, helicase n=1 Tax=Corynebacterium phage BFK... 306 2e-81 UniRef50_A0Q726 Type I restriction-modification system, subunit ... 306 2e-81 UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia ... 305 2e-81 UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=C... 305 3e-81 UniRef50_Q6VSX2 Putative helicase n=3 Tax=Vibrio phage phi16 Rep... 305 3e-81 UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtm... 305 3e-81 UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=M... 305 3e-81 UniRef50_C5UXP6 Type III restriction enzyme, res subunit n=1 Tax... 305 3e-81 UniRef50_B2GAW8 Phage helicase n=5 Tax=root RepID=B2GAW8_LACF3 304 4e-81 UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organ... 304 5e-81 UniRef50_A6DQ75 Type I restriction-modification system R subunit... 304 6e-81 UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax... 304 6e-81 UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=C... 304 8e-81 UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio ... 303 1e-80 UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepI... 303 1e-80 UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 T... 303 1e-80 UniRef50_B5FA21 Type I restriction-modification system, R subuni... 303 2e-80 UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bactero... 302 2e-80 UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordari... 302 3e-80 UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Ta... 301 4e-80 UniRef50_C4ZF20 Type I restriction-modification system R subunit... 301 4e-80 UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Tha... 301 5e-80 UniRef50_B4UTX6 p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_B... 300 8e-80 UniRef50_B5U5V9 Gp54 n=8 Tax=unclassified Siphoviridae RepID=B5U... 300 8e-80 UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=P... 300 9e-80 UniRef50_C2FEA8 Helicase n=4 Tax=Bacilli RepID=C2FEA8_LACPA 300 9e-80 UniRef50_C6LMG2 Type I restriction-modification system, R subuni... 300 1e-79 UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax... 300 1e-79 UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax... 300 1e-79 UniRef50_Q47CK6 Helicase, C-terminal:Type III restriction enzyme... 299 2e-79 UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax... 299 2e-79 UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3... 299 2e-79 UniRef50_Q5NWL0 Type I restriction-modification system (Restrict... 299 3e-79 UniRef50_Q856Y4 Gp50 n=7 Tax=unclassified Siphoviridae RepID=Q85... 299 3e-79 UniRef50_B1GS37 Putative ATP-dependent helicase n=1 Tax=Salmonel... 298 5e-79 UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Acti... 298 5e-79 UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Coryneb... 298 6e-79 UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax... 298 6e-79 UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax... 297 9e-79 UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Ta... 296 1e-78 UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax... 296 2e-78 UniRef50_B1VEN8 Type I restriction-modification system, restrict... 296 2e-78 UniRef50_Q597S9 Putative helicase n=1 Tax=Lactobacillus phage ph... 296 2e-78 UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B... 296 2e-78 UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=... 296 2e-78 UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccal... 295 3e-78 UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax... 295 3e-78 UniRef50_C2KJC2 Helicase n=1 Tax=Leuconostoc mesenteroides subsp... 295 4e-78 UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax... 295 4e-78 UniRef50_A4VH90 Type I restriction-modification system, R subuni... 295 4e-78 UniRef50_B2IMB0 Type I restriction-modification system, R subuni... 294 4e-78 UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bactero... 294 5e-78 UniRef50_Q7MPU7 Type I site-specific restriction-modification sy... 294 6e-78 UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax... 294 8e-78 UniRef50_Q1GLF8 Type I restriction-modification system restricti... 293 9e-78 UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax... 293 9e-78 UniRef50_C7GDQ4 Type I restriction-modification system, R subuni... 293 1e-77 UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Ta... 293 2e-77 UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dok... 292 2e-77 UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax... 292 3e-77 UniRef50_B7RYA9 Type III restriction enzyme, res subunit family ... 292 3e-77 UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformat... 291 5e-77 UniRef50_B3T0J4 Putative DEAD/DEAH box helicase n=1 Tax=uncultur... 291 5e-77 UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax... 291 6e-77 UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax... 290 8e-77 UniRef50_UPI0001545E85 hypothetical protein ORF029 n=1 Tax=Pseud... 290 9e-77 UniRef50_Q2P0A6 Type I restriction-modification system R subunit... 290 9e-77 UniRef50_A5TW30 Type I site-specific deoxyribonuclease restricti... 290 1e-76 UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 T... 290 1e-76 UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax... 290 1e-76 UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 R... 290 1e-76 UniRef50_A3IZE6 DEAD/DEAH box helicase-like protein n=2 Tax=Cyan... 289 2e-76 UniRef50_UPI000050FFCE type III restriction enzyme, res subunit ... 289 2e-76 UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax... 289 2e-76 UniRef50_D1VXH8 DEAD/DEAH box helicase n=13 Tax=Bacteroidales Re... 289 2e-76 UniRef50_A6FSI5 Helicase n=2 Tax=Roseobacter sp. AzwK-3b RepID=A... 289 2e-76 UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria Re... 289 3e-76 UniRef50_C3R6R4 DEAD/DEAH box helicase n=33 Tax=Bacteroides RepI... 289 3e-76 UniRef50_B4RYU7 Type I site-specific restriction-modification sy... 287 5e-76 UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax... 287 6e-76 UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax... 287 7e-76 UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax... 287 8e-76 UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax... 287 9e-76 UniRef50_Q8HAK4 Gp58 n=5 Tax=Caudovirales RepID=Q8HAK4_9CAUD 286 1e-75 UniRef50_P24125 51.5 kDa protein n=5 Tax=root RepID=V51K_BPL79 286 2e-75 UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=F... 285 3e-75 UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax... 284 5e-75 UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R... 284 6e-75 UniRef50_C3MF99 Putative restriction endonuclease type I with R ... 284 7e-75 UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax... 284 7e-75 UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 T... 284 8e-75 UniRef50_A6FFB6 Putative uncharacterized protein n=1 Tax=Moritel... 284 8e-75 UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Ta... 284 9e-75 UniRef50_C3X1S4 Helicase n=2 Tax=Oxalobacter formigenes HOxBLS R... 283 1e-74 UniRef50_Q8EUU6 Type I restriction-modification system R subunit... 283 1e-74 UniRef50_B4WJ71 Type III restriction enzyme, res subunit family ... 282 2e-74 UniRef50_A0YZ56 Putative uncharacterized protein n=1 Tax=Lyngbya... 282 2e-74 UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49... 282 2e-74 UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax... 281 4e-74 UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax... 281 4e-74 UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycopla... 281 4e-74 UniRef50_C4W845 Type III restriction protein res subunit n=1 Tax... 281 5e-74 UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax... 281 7e-74 UniRef50_B6R0S4 Type III restriction enzyme, res subunit family ... 281 7e-74 UniRef50_C4V188 Putative uncharacterized protein n=1 Tax=Selenom... 281 7e-74 UniRef50_B5Y627 Type I restriction-modification system, R subuni... 281 8e-74 UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax... 280 9e-74 Sequences not found previously or not previously below threshold: >UniRef50_P33919 Uncharacterized protein yejH n=254 Tax=Proteobacteria RepID=YEJH_ECOLI Length = 586 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 586/586 (100%), Positives = 586/586 (100%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE Sbjct: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKE 60 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH Sbjct: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD Sbjct: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH Sbjct: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR Sbjct: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP Sbjct: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG Sbjct: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS Sbjct: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA Sbjct: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 Query: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG Sbjct: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG 586 >UniRef50_A6VYC7 Type III restriction protein res subunit n=5 Tax=Gammaproteobacteria RepID=A6VYC7_MARMS Length = 586 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 313/584 (53%), Positives = 410/584 (70%), Gaps = 5/584 (0%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 F LR YQ +AV+A+L+HFR PAVIVLPTGAGKSLVIAEL+RLA+GRV+ LAHVKELV Sbjct: 5 FQLRDYQIQAVEASLDHFRSSNDPAVIVLPTGAGKSLVIAELSRLAKGRVVCLAHVKELV 64 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QNHAK+ A G A IF+AGL +K S K F S+QS++ +L F SL+I+DECHR+ Sbjct: 65 EQNHAKFLATGSSAGIFSAGLSQKTSTEKTTFASIQSLSASLVDFNEPVSLIIIDECHRV 124 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G +E QY + + H +NP +++LGLTATP+RLG GWIYQ HYHG R +LF+ CI Sbjct: 125 GMEESGQYNKTIEHFRALNPKVKILGLTATPYRLGSGWIYQNHYHGYTRTCTNSLFKKCI 184 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD--LNRELKKQQRITPH 240 +ELPL++M+K GYLTPP D + YDFS L +G + D LN + K R+T Sbjct: 185 FELPLQHMVKKGYLTPPIHYDAAIAHYDFSLLTESLDGEQNTDDIALNELIHKHPRVTKA 244 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 + QI++ + R+GVMIFAAT++HAKEI LPA+ ALITG T +RD LI FKA+ Sbjct: 245 VTEQILQLSQDRQGVMIFAATIDHAKEIASYLPADKTALITGKTKLKQRDSLIAAFKAKE 304 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 +YLVNV+VLTTGFDAPHVD+IAILRPT+S+SL+QQIVGRGLRL+PGK DCL+LDY N Sbjct: 305 IKYLVNVSVLTTGFDAPHVDVIAILRPTQSISLFQQIVGRGLRLSPGKKDCLVLDYTNNG 364 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 ++++ PE+G + D+V VQ+ CP+C FANTFWG+ A+G ++EHFGRRC G E++ G Sbjct: 365 YNIFQPEIGEKRPTQDSVAVQIHCPSCDFANTFWGRKDAEGNILEHFGRRCHGLLENEQG 424 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMS 480 +QC +RFRFK CP CN ENDIAAR+C+ C L+DPDD+L++AL LK+ VLRCSG++ Sbjct: 425 EEQQCSYRFRFKRCPYCNEENDIAARQCQHCAEKLIDPDDLLRSALNLKNNKVLRCSGIT 484 Query: 481 LQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITA 540 + EK +KI Y+DEDG +SE FR R F LF R +++ Sbjct: 485 PELNIKEKS--IKIIYHDEDGLTLSETFRFNFKKSRQTFNDLFAR-RIANGSQSIQFDKI 541 Query: 541 ADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAHEL 584 +I L PDFV+A+ + Q+WQV E++FDY+G +R A+EL Sbjct: 542 EEIERFLPYLPTPDFVIAKKQKQHWQVTERLFDYQGPYRKANEL 585 >UniRef50_Q1QZA7 Type III restriction enzyme, res subunit n=5 Tax=Gammaproteobacteria RepID=Q1QZA7_CHRSD Length = 613 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 377/603 (62%), Positives = 448/603 (74%), Gaps = 25/603 (4%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVA 63 +LRPYQ +AVD + HFRR PAV+VLPTG+GKSLVIAELARLARGRVLVLAHV+ELV Sbjct: 8 SLRPYQHQAVDNVIAHFRRGDDPAVVVLPTGSGKSLVIAELARLARGRVLVLAHVRELVE 67 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-----FSLLIVDE 118 QNHAKY+A GLEAD+F+AGL RKES +VVFGSVQSV R+L+ F+ F+LL++DE Sbjct: 68 QNHAKYRAYGLEADLFSAGLGRKESERQVVFGSVQSVVRSLERFEAHEAWGAFTLLVIDE 127 Query: 119 CHRIG----------DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 CHRI D S Y Q++ HL + NP L++LGLTATP+RLG+G+IY H+HG Sbjct: 128 CHRIPPGASAGKVRDDKGASSYHQVIAHLRRHNPRLKVLGLTATPYRLGQGFIYHRHHHG 187 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM-------PVVQYDFSRLQAQSNGL 221 MVRGD F+DC++E PLR M+K GYL PP R+D +YDFSRL G Sbjct: 188 MVRGDADCFFQDCVFEQPLRLMVKQGYLAPPRRVDAALYAEDGEQTRYDFSRLSPGRGGG 247 Query: 222 FSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT 281 F EA+LNR ++ R TP II++++E A R+GVMIFAATV HA+EI+G LPA+ AALI Sbjct: 248 FEEAELNRVVQGH-RATPGIIAEVVEQARERRGVMIFAATVAHAREIMGYLPAQQAALIV 306 Query: 282 GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 341 G TPG ER+ LIE+FKAQR +YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG Sbjct: 307 GATPGREREALIEDFKAQRLKYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRG 366 Query: 342 LRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADG 401 LRLAPGK DCLILDYAGNP DLYAPEVG P+ SD PVQV CPACG AN FWGK + Sbjct: 367 LRLAPGKQDCLILDYAGNPWDLYAPEVGEPRPDSDAEPVQVECPACGHANLFWGKRDGE- 425 Query: 402 TLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDM 461 +IEH+GRRCQG ED DG R QCDFRFRFK C QC AENDIAAR C +CD LVDPDD Sbjct: 426 LVIEHYGRRCQGLLEDTDGRRRQCDFRFRFKVCDQCGAENDIAARACHQCDERLVDPDDK 485 Query: 462 LKAALRLKDALVLRCSGMSLQHGHDEKG-EWLKITYYDEDGADVSERFRLQTPAQRTAFE 520 LKAALRLK+A VLR SGM LQ + +G LK+TY+DEDGA + E F L+T AQR AF Sbjct: 486 LKAALRLKEAKVLRVSGMQLQAVTNGRGLPRLKVTYHDEDGATLDEWFALETAAQRRAFT 545 Query: 521 QLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRL 580 F+R H R PG R + ++A + L+ PDFV+ R G++WQ+R+K+FDY GR+R Sbjct: 546 LAFLRHHLRAPGSDWRPDSPEAVIAGERRLKAPDFVIGRKVGRHWQIRDKLFDYAGRYRK 605 Query: 581 AHE 583 A + Sbjct: 606 ADD 608 >UniRef50_Q12MF5 Type III restriction enzyme, res subunit n=21 Tax=Shewanella RepID=Q12MF5_SHEDO Length = 616 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 306/587 (52%), Positives = 399/587 (67%), Gaps = 12/587 (2%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQQ+AVDAT+NHF+R K AV+VLPTGAGKS+VIAELAR+A+G VLVL HVKELV Sbjct: 35 IQLRNYQQDAVDATINHFKRSKDSAVLVLPTGAGKSIVIAELARIAKGNVLVLTHVKELV 94 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QN K L A I++AGLK+K++ GK V S+QS AR ++ F FSL+I+DECHR+ Sbjct: 95 EQNAQKVGLLTESASIYSAGLKQKKAQGKTVVASIQSAARAVERFSQGFSLVIIDECHRV 154 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 ++ SQYQQ+L+ L K NP L+LLGLTATP+RLG G++Y+ HYHG V + +F +CI Sbjct: 155 STEKTSQYQQLLSQLIKQNPKLKLLGLTATPYRLGSGYVYRHHYHGKVGNTDNPVFENCI 214 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 ++LP+R +IK GYLT P+ D QYDF+ L G + +A+++ LK Q R T II Sbjct: 215 FDLPMRPLIKQGYLTEPKIFDGLSAQYDFNALSPSDTGEYPQAEVDALLKHQGRATKAII 274 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFR 302 Q+ + A R+GV+IFAATV HA+EI+ L + AALIT TP ERD +I FK + R Sbjct: 275 KQVKQVAELRRGVLIFAATVRHAQEIMTYL-DDSAALITATTPHLERDDIISRFKTESLR 333 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 Y+VNVAVLTTGFDAPHVDLIAILRPT S+SL+QQ++GRGLRLAP KTDCL++DYA N +D Sbjct: 334 YIVNVAVLTTGFDAPHVDLIAILRPTASISLFQQMIGRGLRLAPNKTDCLVIDYAANGYD 393 Query: 363 LYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDD---- 418 LY PEVG K S VPVQV CP C FANTFWG DG L+EH+GRRCQG + + Sbjct: 394 LYYPEVGQAKPNSRAVPVQVHCPVCSFANTFWGLVDNDGDLVEHYGRRCQGLVDSELQSS 453 Query: 419 --DGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRC 476 + QCDFRFR K CP C ++NDIAAR C +CD+ L+DPD LK L + + +C Sbjct: 454 TVNIKEVQCDFRFRSKACPDCGSDNDIAARICLQCDSTLIDPDKRLKQVLNAQHHHLFKC 513 Query: 477 SGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIP-L 535 M + G L + Y D +G D ++F TP QR AF +F HTRTPG+ Sbjct: 514 QEML----LTQDGNKLVVQYLDVEGNDFKQQFYFDTPGQRRAFFAVFAMSHTRTPGMAHP 569 Query: 536 RWITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFRLAH 582 ++ D+L R PD ++ + ++WQ++E FDY+GR++L++ Sbjct: 570 KYHKVEDVLKDLKRFRKPDMLLLKKNKKFWQLQEAFFDYQGRYQLSY 616 >UniRef50_B5JP68 Type III restriction enzyme, res subunit family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP68_9BACT Length = 578 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 300/578 (51%), Positives = 400/578 (69%), Gaps = 5/578 (0%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 ++ LR YQQEAVD+TLNHFRR +TPAVIVLPTGAGKSLVIAELA++A+GRVLVLAHVKEL Sbjct: 1 MYKLRTYQQEAVDSTLNHFRRKRTPAVIVLPTGAGKSLVIAELAKIAKGRVLVLAHVKEL 60 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHR 121 V QNH KY++ GL+A I++AGL +K KV+FGS+QSVA D F +F+LL++DECHR Sbjct: 61 VEQNHLKYESYGLQAGIYSAGLNQKNGERKVIFGSIQSVANASDDFFEDFTLLVIDECHR 120 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G + +SQY +++ L N + +LGLTATP+RLG GWIY + G ++ E F+ C Sbjct: 121 VGLEPDSQYAKVIKRLKLNNSRICILGLTATPYRLGLGWIYNYAIRGELKTQELRFFKQC 180 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 IY+LPL YMIK+ YLTPP ++D+PV YDFS L + ++ L L +Q+R+TP I Sbjct: 181 IYDLPLEYMIKNKYLTPPVKVDIPVTSYDFSEL-TEGGSAYTMTQLEEVLHQQRRLTPLI 239 Query: 242 ISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQ 299 I I++ + R+GVMIF++TV+HA+EI+ LP A LI G+T +ERD +I +FK + Sbjct: 240 IKNIVDITDSYQRQGVMIFSSTVKHAQEIMKTLPQGQARLILGETEDSERDQIINDFKNK 299 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 F+YLVNV+VLTTGFDA HVD+IAILRPTES+SLYQQI+GRGLRL GK DCL+LDY G Sbjct: 300 AFKYLVNVSVLTTGFDAAHVDVIAILRPTESISLYQQIIGRGLRLDTGKKDCLVLDYTGM 359 Query: 360 PHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDD 419 H +++PE+G K S++V VQV CP CGF N FWG DG +IEHFGR+C+G ++ D Sbjct: 360 GHSIFSPEIGEKKTVSESVAVQVPCPECGFINDFWGILDDDGHIIEHFGRKCRGGNQNPD 419 Query: 420 GHR-EQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSG 478 + C +RFRFK C QC+AENDI AR CR+C VL+DPD LK A KDA VL Sbjct: 420 TYEFTPCGYRFRFKVCEQCSAENDITARECRKCGNVLIDPDTKLKQAKLSKDAHVLTPDS 479 Query: 479 MSLQHGHDEKG-EWLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRW 537 + + D+ G +L++ YYD D ++E L F F+R H + P + L Sbjct: 480 IEMLERFDKNGNPYLQVKYYDYDARFLAEIHYLNNQTSIKKFNINFLRSHLKRPEMKLNI 539 Query: 538 ITAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYE 575 + +I+ Q LR P FV+ R + ++W++ EK+F E Sbjct: 540 SSVGEIIQMQPQLRMPSFVIGRKQEKFWKITEKIFSEE 577 >UniRef50_Q5G7M7 Putative helicase n=1 Tax=Listonella phage phiHSIC RepID=Q5G7M7_9CAUD Length = 953 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 189/583 (32%), Positives = 282/583 (48%), Gaps = 67/583 (11%) Query: 35 AGKSLVIAELARLAR----GRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG 90 GKS++IAE+A+ + LV+ KE+ QN KY++ G A ++A + +KE Sbjct: 374 CGKSVIIAEIAKFFNEVSGKKTLVIGPNKEICQQNAEKYKSYGFPASFWSASIGKKEMRH 433 Query: 91 KVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT 150 +VVFGS S+ LD F +F +I+DE H + ++I +H+ + N LR++GLT Sbjct: 434 QVVFGSPVSIKNELDKFGPQFGAVIIDEAHLLS----PTVKEICSHMKEQNNLLRIVGLT 489 Query: 151 ATPFRLGKGWIYQFHYHGMVRGDE---KALFRDCIYELPLRYMIKHGYLTPPERLDMPVV 207 ATP+RLG G+IY++ + GDE F+ +Y + + +I G+LTPP Sbjct: 490 ATPYRLGSGYIYEYDDNNNPVGDECTKNPFFKRLVYRITAKELIDQGFLTPPIADHEMAS 549 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 +YD S +Q F D+ + + Q R+T II+ ++ + MIFAAT++HA+E Sbjct: 550 KYDTSGVQLNKRNQFDAKDIEQAFEGQGRLTAQIIADVVSHCQNKMCCMIFAATIQHAQE 609 Query: 268 IVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRP 327 I+ LP ++ +TG T +R+ IE K +YLV+V LTTG D +VD+IAILR Sbjct: 610 IMESLPKHNSYCVTGKTKRKDREKAIERAKTGEIKYLVSVGTLTTGVDITNVDVIAILRA 669 Query: 328 TESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYA------PEVGTPKGKSDNVPVQ 381 TES SL QQI+GRGLRL KT CL+LDYA N P++ G + V Sbjct: 670 TESASLLQQIIGRGLRLHENKTTCLVLDYAENIERHGLEDDLFNPDIRVSGGGDGSAKVN 729 Query: 382 VFCPACGFANTFWGKTTADGTLIE----------------------HFGRRCQGWFEDDD 419 C +CG N F + D I+ H+GRRC G + + Sbjct: 730 ALCKSCGTVNEFTLRKGCDLDHIDEYGYALDLAGERIEMEGQPMPAHYGRRCYG-GDVIN 788 Query: 420 GHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLK----------AALRLK 469 GH +C R+ K CP+C ENDIAAR C C T LVDP++ LK A+ Sbjct: 789 GHYVRCSERWSMKVCPECEVENDIAARYCTSCRTELVDPNEKLKADYKRMKRDPRAISTD 848 Query: 470 DALVLRCSGMSLQH-----GHDEKGEWLKIT-YYDEDGADVSERFRLQTPAQRTAFEQLF 523 L C Q D + E+ T +Y D ++V + + E +F Sbjct: 849 KMLGWECKPWITQRGNNTLRVDYRSEYRSFTIWYSPDSSNVKAQGLWNNLS-----EVVF 903 Query: 524 IRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ 566 + H D L + P+ V + +G +++ Sbjct: 904 GKGHI-----APTPEAFCDALK-RGFGTMPETVTVQKQGDFFR 940 Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 19/35 (54%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGA 35 M F LRPYQ+EAV + H + P V+ TG Sbjct: 1 MAFELRPYQKEAVKKVIEHVKICLDPCVVDAATGC 35 >UniRef50_A0LBR5 Type III restriction enzyme, res subunit n=3 Tax=Proteobacteria RepID=A0LBR5_MAGSM Length = 538 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 166/604 (27%), Positives = 259/604 (42%), Gaps = 91/604 (15%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLA 56 + LRPYQ++A+DA +F++ +I +PT GKSLV+A R A R+LV+ Sbjct: 1 MLELRPYQRQAIDAIYAYFQKKTGNCLICIPTAGGKSLVMATFIREAIEHYPETRILVVT 60 Query: 57 HVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 HV+EL++QNHA+ + +A I +AGL ++ +V+F +QSV + L+ Sbjct: 61 HVRELISQNHAELMGIWPDAPAGIHSAGLGARDVDAQVLFCGIQSVHKRAYDI-QRCDLV 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 +VDE H I + Y++ L LT +NP+++++G TATP+RL G++ + Sbjct: 120 LVDEAHLIPRTSNTMYRKFLEELTVINPYMKIIGFTATPYRLD---------SGLLHKGK 170 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 ALF D +++P+ +I G+L+P Q D S + + G F L + Q Sbjct: 171 DALFDDIAFDVPINDLIDEGFLSPL-ISKKTDTQLDVSGVGTR-GGEFIAGQLEAAV-DQ 227 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 +T + +I+ R+ ++F + V HA+ + + A I G TP ERD + Sbjct: 228 ADVTRAAVEEIIALGQDRRAWLLFCSGVAHAEHVRDAVKARGYSCEGIFGHTPKEERDGI 287 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 IE F+A + R L + VLTTGF+ VDLIA+LRPT+S LY QI GRG RL P K +CL Sbjct: 288 IEAFRAGQIRALAAMNVLTTGFNVKSVDLIAMLRPTQSAGLYVQIAGRGTRLHPEKENCL 347 Query: 353 ILDYAGNPHDLYAPE----VGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 +LD+AGN + + Q CPAC N Sbjct: 348 VLDFAGNVARHGPIDQIQSFVKKDKEEPGEAPQKVCPACQAVN----------------- 390 Query: 409 RRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRL 468 A + C ECD P+ + A Sbjct: 391 ---------------------------------PAAVQYCIECDFEFPPPEIKINATATT 417 Query: 469 KDALVLRCSGMSLQHGH-------DEKGEWLKITYYDEDGADVSERFRLQTP--AQRTAF 519 K L H + K L++ Y E + A++ A Sbjct: 418 KKILSSGKPEWVRVHDIVYKRHQKEGKPPSLRVEYM-CGLQWHKEWVCFEHEGYARQKAV 476 Query: 520 EQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQVRE-KVFDYEGRF 578 + F R TP + L L PD + R G++ ++ + + D G Sbjct: 477 QWWFQRVGLTTP----VPNSVGQALTMVDDLPIPDEIKIRSNGKFIEIMDCRFHDKGGDH 532 Query: 579 RLAH 582 ++ Sbjct: 533 DRSN 536 >UniRef50_C8Q076 Type III restriction enzyme, res subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8Q076_9GAMM Length = 599 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 159/621 (25%), Positives = 256/621 (41%), Gaps = 108/621 (17%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPT-GAGKSLVIAELARLA-----RGRVLVL 55 +++LRPYQQ A+D + RH IV GAGKS++IAEL + + R+++ Sbjct: 1 MYSLRPYQQRALDELMYWLNRHNDGNPIVDACVGAGKSIIIAELCKRIIELDPQARIVMC 60 Query: 56 AHVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSL 113 KEL QN K +A+ +A + +A L +K+ + +++F ++ S+A+ G+ ++ Sbjct: 61 VASKELCQQNLEKLRAIWEDAPAGVCSASLGQKDMNSQIIFATIGSIAKYAHEL-GKVNI 119 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 LI+DECH + D Y+ + + K +P++ ++G T TPFR W++Q Sbjct: 120 LIIDECHNVNSDNAGMYRTFIDDIKKYGSPYVCVIGFTGTPFRGDGIWLWQ--------- 170 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 + LF + + ++K G+L+P D + ++ S G + DL Sbjct: 171 GKDPLFAGTATRVTMDELLKLGFLSPLVVDQGTPETIDTTGVKT-SMGDYVVKDLENA-A 228 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP---------AEDAALITGD 283 I +S + E A RK +IF T++HAK ++ L + ++T Sbjct: 229 LDPVIIKKTVSDLCERGAERKKWLIFCVTIDHAKAVLDELKVTENEHFTLNLNPEMVTSK 288 Query: 284 TPGAERDVLIENFK-----AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 T R ++ FK LVNVA LTTGFDAP DLIA+LRPT+S LY QI Sbjct: 289 TSNIMRSDILARFKLPHNQPSAINCLVNVACLTTGFDAPSTDLIALLRPTKSPVLYVQIA 348 Query: 339 GRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGK----SDNVPVQVFCPACGFANTFW 394 GRG+R+A K DCL LDY DL + + K +D +CP CG N Sbjct: 349 GRGMRIAEEKKDCLWLDYTSTTRDLGPVNLIKGRNKINVVTDGTAPFKYCPDCGNMNPI- 407 Query: 395 GKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTV 454 C +C A Sbjct: 408 -----------------------------------HATECVECGA--------------- 417 Query: 455 LVDPDDMLKAALRLKDALVLRCSGMSLQHGHD-------------EKGEWLKITYYDEDG 501 L+ + +AL L Q D K L+I Y+ D Sbjct: 418 LIPVNQNSPHNSTASNALPLHGFQPQPQLWFDIEQVGYYKHQGKNGKPPTLRIDYHVADE 477 Query: 502 AD-VSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARM 560 +SE + + H IP A ++ + L +P + + Sbjct: 478 VYPISEWKCFEHDGFALRMASQWWSDHMVGFDIPFSVDEALQLIHENQLTIYPTRIQCQK 537 Query: 561 --KGQYWQVREKVFDYEGRFR 579 +G++WQ+++ ++YE + R Sbjct: 538 DAQGKFWQIKK--YEYERKDR 556 >UniRef50_C6BRN4 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=C6BRN4_DESAD Length = 802 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 112/558 (20%), Positives = 186/558 (33%), Gaps = 92/558 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----------------- 48 R YQ A++ L K ++ L TG GK+ + +L+ Sbjct: 156 RYYQHNAINQALEAIAAGKDRILLTLATGTGKTFIAFQLSWKLFHSRWNIKEWREGEEIT 215 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEADIFAA-----GLKRKESHGKVVFGSVQSVAR 102 R R+L LA L Q + + A +A + + +G + F Q+ Sbjct: 216 RRPRILFLADRNILADQAYNSFSAFPEDALVRISPDAIRKKGMVPKNGNIFFTIFQTFMS 275 Query: 103 NLD-----------AFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 +D F +I+DECHR G +ES ++ IL + LGLTA Sbjct: 276 GIDAEGNSAPNFGDYPPDFFDFIIIDECHRGGAKDESTWRGILEYFAPAVQ----LGLTA 331 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD-------- 203 TP R Y F D +Y L+ I G+LTP + + Sbjct: 332 TPRRTNNADTY-------------GYFGDPVYTYSLKDGINDGFLTPFKVVQIATTLDEY 378 Query: 204 MPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 + + + + + + E + NR ++ + H + M+ + ++F AT Sbjct: 379 VYTSDDEIIQGEVEEGKRYGENEFNRSIEI-KAREEHRVKIFMDNIDQSQKTIVFGATQH 437 Query: 264 HAKEIVGLLPAE------DAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGF 314 HA + ++ + + + AE + + F+ L L+TG Sbjct: 438 HAGILRDIINQQKTCSDPNYCVRVVAQDLAEGEKWLRIFQDNEKTIPTILTTSQKLSTGV 497 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGK 374 DA +V I +LRP S+ ++QIVGRG RL GK I D+ PE + Sbjct: 498 DARNVRNIVLLRPVNSMIEFKQIVGRGTRLFDGKDYFTIYDFVKAYEHFNDPEWDGEPVE 557 Query: 375 SDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNC 434 + C CG C + C + + C Sbjct: 558 PE------PCSRCGNNPCTCEI---------KPPEPCSICGQ------LPCVCEKKVQPC 596 Query: 435 PQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKI 494 P+C E+ + + L D + MS + L Sbjct: 597 PKCG-EHPCVCEKKTKLKIKLADGKSRQIQHMMATTFWSTEGKPMSAAEFIKQMYGDLPE 655 Query: 495 TYYDEDGADVSERFRLQT 512 + DED + + T Sbjct: 656 LFKDEDELR-NLWGKPDT 672 >UniRef50_D1N7I0 Helicase domain protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I0_9BACT Length = 550 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 161/574 (28%), Positives = 247/574 (43%), Gaps = 69/574 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL----ARLARGRVLVLAHV 58 LR YQQ+AVDA + RR+ +V+PT GK+ ++A + + GRV++L+HV Sbjct: 1 MQLRQYQQQAVDAVYKYLRRYDDNPCVVIPTAGGKTPILATIVKDAIQQWDGRVMILSHV 60 Query: 59 KELVAQNHAKYQALGLEADIFAA--GLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIV 116 KEL+ Q K + E DI GLKR ++ K + +QS RN D F F L+IV Sbjct: 61 KELLEQAVDKIHTVYPECDIGIYSTGLKRWDTDNKCIVAGIQSAYRNTDGFGN-FDLIIV 119 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H I + + Y+ L + NP LR++GLTATP+RL G I Sbjct: 120 DEAHLIPEKGDGMYRNFLRRMKDHNPELRVIGLTATPYRLTSGPI----------CAPDN 169 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + +E+ ++ +++ G+L P + D S L ++ G F E+++++ L Sbjct: 170 ILNKICFEVGVKELLQQGFLCPLRS-KASRQEIDASGLHVRA-GEFIESEVDK-LMNTGD 226 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIE 294 + S+I+ +A RK V+IF +++HA+ ++ + D A + GDT + R ++E Sbjct: 227 LVAQACSEIISYARERKAVIIFCCSIDHAQNVLAHIRKHDSTAEAVFGDTLPSFRAEILE 286 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 FKA + ++LVNV VLTTGFDAP++D + +LRPT S LY Q+VGRG RL P K DCL+L Sbjct: 287 RFKAGKIKFLVNVGVLTTGFDAPNIDCVVLLRPTASPGLYYQMVGRGFRLHPDKKDCLVL 346 Query: 355 DYAGNPHDLYAPE-VGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQG 413 D+ GN + + P+ CP C Sbjct: 347 DFGGNIERHGPVDSIQVEPKADREEPLGKTCPKCREVVPTAA------------------ 388 Query: 414 WFEDDDGHREQCDFRFRFKNCPQCNA--ENDIAARRCRECDTVLVDPDDMLKAALRLKDA 471 C C + A RE + + Sbjct: 389 ------------------MLCHVCGHSFIKEKAESEEREIGHDAAPAKVAILSGEITDTE 430 Query: 472 LVLRCSGMSLQHGHDEKGE---WLKITYYDEDGADVSERFRLQTPAQRTAFEQLFIRPHT 528 ++ S+ + + +KI Y SE + + R H Sbjct: 431 YAVQSVRYSVHEKRNAEPGAPRTMKIEYRINMLQSFSEWICPEHGGYVKLKFIRWWRKH- 489 Query: 529 RTPGIPLRWITAADI--LAQQALLRHPDFVVARM 560 PG L A D LA + L P + R Sbjct: 490 -APGCDL-PHDAQDAVWLATEGALEWPTHITVRT 521 >UniRef50_Q8YKY1 Alr7157 protein n=2 Tax=Nostocaceae RepID=Q8YKY1_ANASP Length = 629 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 129/527 (24%), Positives = 205/527 (38%), Gaps = 73/527 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHV 58 +F LR YQQ+ + T + ++ L TG GK+++ AE+A + VLV+AH Sbjct: 1 MFNLRDYQQDLISKTFAAWSSGIRKVLLQLSTGGGKTVIFAEIASKMTAQGEGVLVVAHR 60 Query: 59 KELVAQNHAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +EL+ Q K A+ L+ I AG K + + S+Q++AR L+I+D Sbjct: 61 EELILQAAEKLTAVTKLQPGIIKAGY--KSTDSPLQIASIQTLARR--QTYPSAQLVIID 116 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y+++L PH +LGLTATP R + + Sbjct: 117 EAHH---SSANSYRKLLD----AYPHALVLGLTATPRREDG-------------YGLRDI 156 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F I + + +I GYLT + + + +SR + F+ +L + Sbjct: 157 FDHLICSVSTKELITLGYLTDYKLIA----GFKYSRHKVPQKRDFTRKELEEVASDYKP- 211 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 ++ Q F A K +IFA V H+K+I A+ + G+TP ER ++ Sbjct: 212 -SEVLKQWQNFCA-GKKTVIFAVNVMHSKQIAAAFCADGITCEHLDGETPHNERQAILNR 269 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F++ + + + N A+LT GFD P I RPT SV+L+ Q++GR LR APGK ILD Sbjct: 270 FRSGQTQVISNCAILTEGFDCPDSSAAVIARPTSSVTLWLQMIGRVLRPAPGKDYATILD 329 Query: 356 YAGNPHDLYAP----EVGTPKGKSDNVPV-QVFCPACGFA--------NTFWGKTTADGT 402 N L P + D CP C T + Sbjct: 330 MTDNWFRLGRPCDNRKWSLEPVSCDPDTQGSRCCPHCHHVFKPMPSLIRTKDCFSYEKAE 389 Query: 403 LIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDML 462 + + C C FR+ EN E D + + Sbjct: 390 FVIQYEVDCPN-----------CGKSFRWVLEESSTIENSGVPMIISESDIQFKEVPPEV 438 Query: 463 KAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFR 509 + +L + + + K+ +Y G V + F Sbjct: 439 RPSLLT---------PIIEAKKRKFRNQEKKLVFY---GFTVRDWFL 473 >UniRef50_D2LA91 Type I site-specific deoxyribonuclease n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LA91_9DELT Length = 798 Score = 354 bits (908), Expect = 7e-96, Method: Composition-based stats. Identities = 117/551 (21%), Positives = 194/551 (35%), Gaps = 108/551 (19%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----------------- 48 R YQ A++ L + ++ L TG GK+ + +LA Sbjct: 160 RYYQHNAINQALEAIAAGRDRILLTLATGTGKTFIAFQLAWKLFQSRWNLKDWKGGGEPS 219 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEADIFAA-----GLKRKESHGKVVFGSVQSVAR 102 R R+L LA L +Q + + A +A + + +G + F Q+ Sbjct: 220 RRPRILFLADRNILASQAYNAFSAFPEDALVRISPDAIRKKGMVPKNGSIFFTIFQTFMA 279 Query: 103 NLDAF-----------QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTA 151 DA F +++DECHR G ++ES +++ILT+ + LGLTA Sbjct: 280 GRDAAGNPAPNFGDYPPDFFDFIVIDECHRGGANDESNWREILTYFSPAVQ----LGLTA 335 Query: 152 TPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDF 211 TP R G Y A F D +Y L+ I GYLTP + + ++ Sbjct: 336 TPKRKGNVDTY-------------AYFGDPVYVYSLKEGINDGYLTPFKVRQIATTLDEY 382 Query: 212 --------SRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVE 263 + ++E+D NR ++ +R + + M+ + ++F AT + Sbjct: 383 VYTADDNVIEGDIEEGRRYTESDFNRVIEIAER-ERYRVKLFMDMIDQTQKTLVFCATQD 441 Query: 264 HAKEIVGLLPA-------EDAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTG 313 HA + + + +T + G+E + + F+ L L+TG Sbjct: 442 HALAVRDCINQTKQNSDPDYCIRVTAN-DGSEGERWLRVFQDNDKTIPTILTTSQKLSTG 500 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPK- 372 DA +V I ++RP S+ ++QIVGRG RL GK I D+ PE Sbjct: 501 VDARNVRNIVLMRPINSIIEFKQIVGRGTRLFEGKDYFTIYDFVKAYERFDDPEWDGDPI 560 Query: 373 --GKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFR 430 V CP CG + C+ Sbjct: 561 EPEPRPPVKPPKECPVCG---------------------------------KLPCECVRE 587 Query: 431 FKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGE 490 + CP+C I +R + L D + + + +S + Sbjct: 588 PEPCPECGRIPCICGKR-VKTKIKLADGKERMIQHMTATTFWSPDGKPLSAAQFIESLYG 646 Query: 491 WLKITYYDEDG 501 L + DED Sbjct: 647 QLPELFKDEDE 657 >UniRef50_A4XFJ4 Type III restriction enzyme, res subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFJ4_CALS8 Length = 899 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 104/440 (23%), Positives = 178/440 (40%), Gaps = 39/440 (8%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 R Q EA+ A++V TG GK+ + A + VL +AH +E++ Q Sbjct: 288 PREAQTEALYWLKKCREEGLDRALVVAATGIGKTFLAAFD-SIGFKTVLFVAHREEILRQ 346 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-----GEFSLLIVDEC 119 ++ + A I RKE+ ++F SVQ++ + F +I+DE Sbjct: 347 AALSFKTIRSNATIGFFTGDRKETEKDIIFASVQTLGKEEYLNPTYFSSDYFEYIIIDEF 406 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H YQ I+ + LLGLTATP RL +++ + Sbjct: 407 HHA---VAKSYQNIINYFKPKF----LLGLTATPERLDNKDVFELCNY------------ 447 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + +YEL L+ I GYL P + + DFS++ + NG + E +L + L +R Sbjct: 448 NVVYELRLKDAINKGYLVPFHYYGIYD-ETDFSQIP-EINGKYKEDELEKVLMIHKR-AD 504 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGA--ERDVLIE 294 I+ ++F ++ + F + HA+ + A+ +G+ +R I Sbjct: 505 LILKNYLKF--NKQKTLAFCCSRNHAEFMADYFNKNGVKCCAVYSGEQGKNALQRSEAIR 562 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 K + + + V + G D P +D++ LRPTES +++ Q +GRGLR A K +L Sbjct: 563 KLKNGQIKVIFTVDMFNEGVDIPEIDMVMFLRPTESPTVFLQQLGRGLRKAKNKNYLTVL 622 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQV-FCPACGFANTFWGKTTADGTLIEHFGRRCQG 413 D+ GN G+ D +Q F D +I+ F ++ + Sbjct: 623 DFIGNYKRANLIPFLLSTGEYDIEKIQKSKYSVDDFEYPDGCVVDFDFRIIDIFKKQAES 682 Query: 414 WFEDDDGHREQCDFRFRFKN 433 + + R K Sbjct: 683 LK---NIQEIVYEEFLRIKE 699 >UniRef50_Q31QB2 DEAD/DEAH box helicase-like n=2 Tax=Synechococcus elongatus RepID=Q31QB2_SYNE7 Length = 469 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 127/522 (24%), Positives = 207/522 (39%), Gaps = 68/522 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAHVK 59 F LR YQQ+ V+ + + ++ +PTGAGK+ V + ++ + R L+L H K Sbjct: 4 FELRDYQQQVVEELRHSYATGHRSPLVAMPTGAGKTAVFSYISLQSAAKQKRTLILVHRK 63 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 EL+ Q LG+ + A+G SVQ++ R LD E L++VDE Sbjct: 64 ELLLQASRSLDRLGVRHGLIASGFS--WMPYPTQVASVQTLVRRLDRLDWEPELIVVDEA 121 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H + D + + ++L P R+LG+TATP R + +F Sbjct: 122 HHVVPD--NTWGKVL----SAYPRSRVLGVTATPCRTDGRGLGD-------------VFD 162 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 D I + + + G+L P + P +Q D + ++ ++ G +++ L + + K I Sbjct: 163 DLIIGPTIAELTERGFLCPTKIYA-PPIQADLTGVRMRA-GDYAKDQLAQAMDKP-VIVG 219 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 I + F A+VE A+++ + AA + G A R LI++ Sbjct: 220 DAIDHYRRLCPGVP-AIGFCASVEIAQKVAVEFSSAGFKAASLDGTLDSATRSHLIDDLG 278 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + R + L + +++ G D P V +LRPT+S+ LY Q VGR LR APGK+ LILD+ Sbjct: 279 SGRIQVLTSCEIVSEGTDIPVVTAALLLRPTQSLGLYLQQVGRVLRPAPGKSHALILDHV 338 Query: 358 GNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFED 417 GN PE T G+ R +G E+ Sbjct: 339 GNVMRHGLPEADRE-------------------WTLEGEK----------RRSRKGESEE 369 Query: 418 DDGHREQCDFRFRFK----NCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALV 473 QC F CP C + ARR E L++ D A R + Sbjct: 370 KPETVRQCPKCFCAHAPQPTCPNCGHRYVVEARRLEEVRGELIELDKA--AIARQRKEEQ 427 Query: 474 LRCSGMSLQHGHDEKGEWLK---ITYYDEDGADVSERFRLQT 512 + + K + Y+ + + + Sbjct: 428 AKAQTLEELIELGRKRGYKPGWAQRYWKARQSKRQQWGQAHG 469 >UniRef50_A1SXM9 Type III restriction enzyme, res subunit n=4 Tax=Gammaproteobacteria RepID=A1SXM9_PSYIN Length = 967 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 155/396 (39%), Gaps = 33/396 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q EA+ A + ++VL TG GK+ + A + R+L +AH +E++ Q Sbjct: 226 QIEALTALVKSREIGFKRGLVVLATGMGKTWLAAFDVLQLKAKRILFVAHREEILLQAQR 285 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRIGD 124 + L E + ++ V+F SVQ++ R +L F + F ++VDE H Sbjct: 286 TFAQLMPEKSSGFYNAQNRQKGADVLFASVQTIGRENHLQQFSKDHFDYVVVDEFHHAS- 344 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y +L + LLGLTATP R + I + + +YE Sbjct: 345 --APVYSNLLAYFNPDF----LLGLTATPERTDQSDILCLCDN------------NLVYE 386 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I L P + + ++ + + NG F ++ + Q+R HI+ + Sbjct: 387 RNLTQGIDDKILAPFKYYGIWDESVNYQAIPWR-NGRFDPESIDNQFATQKR-ASHILKK 444 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERD-VLIENFKAQRFRY 303 +F ++ + F +V+HA + ++ + R + + Sbjct: 445 WHQF--KQQKTLAFCISVKHADYMAESFNNAGIKAVSVHSKSEIRRNEALTQLQNGTLEV 502 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 + +V + G D P +D I +LRP+ S L+ Q +GRGLRL KT ++LD+ GN H Sbjct: 503 MFSVDLFNEGTDLPALDTILMLRPSNSKILFLQQLGRGLRLHKNKTHLVVLDFIGNHHSF 562 Query: 364 YAPEVGTPKGKS-----DNVPVQVFCPACGFANTFW 394 + V C Sbjct: 563 LNKPYALFGSSTIPVLIKKVKEDKLADGCFVNYDIE 598 >UniRef50_B5ZFR8 Type III restriction protein res subunit n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZFR8_GLUDA Length = 475 Score = 349 bits (896), Expect = 1e-94, Method: Composition-based stats. Identities = 123/519 (23%), Positives = 211/519 (40%), Gaps = 75/519 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 + LRPYQQ+A+D + FR ++V PTGAGK+++ + +A+ + RVL++AH Sbjct: 1 MIQLRPYQQQAIDGVRSAFRDGHRAPLLVAPTGAGKTVMFSHIAQSASAKQSRVLIIAHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KEL+ Q K G++ I A + + V SVQ++AR LDA F L+I+DE Sbjct: 61 KELIRQASRKLSDTGVDHGIIAPWA--EPTGHLVQVASVQTLARRLDAL-PRFDLIIMDE 117 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + +++ P ++LG+TATP R+ + + +F Sbjct: 118 AHHA---VAGTWAKVI----AAQPWAKILGVTATPERMDGRGL---------GANAGGVF 161 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + + +I+ +LTP PV D + ++ ++ G + A L++ + + + + Sbjct: 162 DMLVMGPTIGELIQGEFLTPSRVFA-PVGAPDLTGVKTRA-GDYDIASLSKVMAEPK-LV 218 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 + +A+ + F A VE AK A G PG ERD I Sbjct: 219 GDAVEHYGRYASGLP-AIAFCACVEDAKTYADAFCRAGWRATAAYGAMPGDERDAAIGGL 277 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + L +++ G D P V + +LRPT+S+ L+ Q +GRGLR PGK+ ++LD+ Sbjct: 278 ATGAVQVLTTCDLVSEGLDVPCVGAVILLRPTKSLGLHVQQIGRGLRPMPGKSHLIVLDH 337 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 AGN + P+ + G+ D + Sbjct: 338 AGNTFNHGLPDQP-------------------HDWSLDGRKKKD---------------K 363 Query: 417 DDDGHREQCDFRFRFK-----NCPQCNA-------ENDIAARRCRECDTVLVDPDDMLKA 464 + +C+ F C +C + D R D L++ D ++ Sbjct: 364 GEPVATWRCEHCFAMNSAVMRVCAECGERRASEGKDEDDVERAAEVADGELIEMDPEMQE 423 Query: 465 ALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGAD 503 L+ + + M D+ E K Y Sbjct: 424 RLQYLRSAPFK-ELMRKAKTDDDLREIAKARGYRAGWVW 461 >UniRef50_C0QBN3 HsdR3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBN3_DESAH Length = 1076 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 95/412 (23%), Positives = 164/412 (39%), Gaps = 31/412 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARGRVLVLAHVKELVAQNHA 67 Q+ A++A + A++V+ TG GK+ + R GRVL +AH +E+++Q + Sbjct: 200 QERALEALRDSRNNGLQRALVVMATGVGKTWLAVFDILRNGFGRVLFVAHREEILSQAAS 259 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRIGD 124 + + + K ++FGSVQS+ + +L F F +++DE H Sbjct: 260 TFLTVNPRMKVGFFHGNEKSEDADILFGSVQSLGKKIHLKKFDRTAFDYIVIDEFHHAS- 318 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + YQ IL + T LLGLTATP R I F + + + Sbjct: 319 --AASYQNILNYFTPSF----LLGLTATPERSDGRDIEAFCDN------------NVAFR 360 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P + D+ + +S F A++ + Q I + Sbjct: 361 FDLTEAIEAGRLCPFTYFGIYDRHVDYELIPWRSR-RFDPAEIETAFET-QARALQIFEE 418 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERD-VLIENFKAQRFRY 303 E +R + F ++ HA + + ++ + R I+ + Sbjct: 419 WTEKGQSR--TLGFCVSIHHADFMASFFSGKGVKAVSVHSKSMVRRHDAIDRLSNGLLQI 476 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 + V + G D P +D + ++RPTES +Y Q +GRGLRL GK +++D+ GN Sbjct: 477 IFCVDLFNEGVDIPGIDTVLMVRPTESPVVYLQQLGRGLRLKDGKERLVVIDFIGNHRSF 536 Query: 364 YAPEVGTPKGKSDN---VPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQ 412 + + V FA K D +I+ F + + Sbjct: 537 LQGPQALFGLQPGSPAFVDALKSFQKGTFALPPGCKLHMDLEVIDVFKKMTR 588 >UniRef50_A0LI77 Type III restriction enzyme, res subunit n=6 Tax=cellular organisms RepID=A0LI77_SYNFM Length = 1077 Score = 348 bits (893), Expect = 4e-94, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 153/365 (41%), Gaps = 30/365 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-ARLARGRVLVLAHVKELVAQNHA 67 Q+EA++A ++VL TG GK+ + A R G+VL +AH +E++ Q Sbjct: 380 QREALEALARTRAEGNQAGLVVLATGLGKTWLAAFDSVRFGAGKVLFVAHREEILRQALK 439 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGD 124 ++ + A + K V+F S+Q++ R +L +F F +++DE H Sbjct: 440 TFRRIRPFAALGLYNGTEKLPGADVLFASIQTLGRTNHLRSFDRNLFDYVVIDEFHHAS- 498 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 YQ+++ H LLGLTATP R G + + +Y Sbjct: 499 --ARSYQKLIDHFQPAF----LLGLTATPERTDGGDLLALCA------------ENLVYR 540 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P +P + D+S + +S G F+E L R + +R + + Q Sbjct: 541 CDLVEGIRDGLLCPFRYFGVPD-EVDYSNIPWRS-GRFNEEALTRAVAT-KRRAVNALEQ 597 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIENFKAQRFR 302 A R + F + HA + + + A R ++ Sbjct: 598 YRSRAGRR--TLAFCCSQRHADFMADYFTNQGVRAASVHSGPQTAPRGGTLKRLTDGELD 655 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 + V + G D P+VD + +LRPTES L+ Q GRGLR+A GK ++DY GN Sbjct: 656 VIFAVDMFNEGVDLPNVDTVMMLRPTESRILWLQQFGRGLRVAEGKDYLRVIDYIGNHRS 715 Query: 363 LYAPE 367 Sbjct: 716 FLLKP 720 >UniRef50_C6HZP0 Type III restriction enzyme, res subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZP0_9BACT Length = 950 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 151/359 (42%), Gaps = 30/359 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 Q E + + A+ +L TG GK+ + A R RVL LAH +E++ Q Sbjct: 328 QDEVLLSLAELRADGARRALAILATGLGKTYLAAFDCR-GFSRVLFLAHRREILEQARET 386 Query: 69 YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDD 125 + + E + G +VF VQ++AR L E F ++VDECH Sbjct: 387 FFRVHPEKPASVVSEGEADVSGDLVFAQVQTLARPSRLLNIPPETFDYIVVDECHHA--- 443 Query: 126 EESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYEL 185 E Y++IL H +LGLTATP+R+ G I+ + Sbjct: 444 EAPSYRRILDHFRPKF----VLGLTATPYRMDNGDIFALMD------------GHVVCRR 487 Query: 186 PLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQI 245 I+ G L P + D+ + + G + L R L + R + Sbjct: 488 TFIEGIRGGMLVPFHYFGLKDT-VDYETIPWR-GGRYDPEALERAL-TESRRAQETLRAF 544 Query: 246 MEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRY 303 E + F + HA+ + E A +TG+TP ER ++ F+ Sbjct: 545 REH--EGSKTVAFCVSRLHARLLAEFFSREGIAAGHLTGETPSGERREILRKFREGSLSI 602 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 L V +L G D P +D + +LRPT+S +++ Q +GRGLRLAPGK ILD+ GN Sbjct: 603 LFVVDLLNEGVDIPEIDRVMLLRPTDSPTVFLQQIGRGLRLAPGKGHLTILDFIGNHKR 661 >UniRef50_B9W8D3 Putative uncharacterized protein n=4 Tax=Candida RepID=B9W8D3_CANDC Length = 654 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 115/414 (27%), Positives = 180/414 (43%), Gaps = 32/414 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAHVK 59 F LR YQQ+A+D L I + TG+GK++V + L + + LVLAH + Sbjct: 31 FPLRDYQQKAIDLILESSGSGVKRQAIEMATGSGKTVVFSHLIPLLKREGAKTLVLAHTQ 90 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 EL+ Q+ K + + + G R V+ SV S+AR L F + F +I Sbjct: 91 ELITQSRDKINKVNPDLKVGIEMGKVRSTPDDDVIVASVMSLARSNRLARFDPDEFKTII 150 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPH--LRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DECH Y +IL H + ++G TAT R K + Sbjct: 151 IDECHHA---IAPSYLKILKHFKADTKDTDVHVIGFTATLARTDKQKL------------ 195 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 +F +++ L MI++ L + ++ + + + + + G + + L L K Sbjct: 196 -GTVFDKIVFQRSLPTMIENKELAEFKISNVSIKNLNLTNVPKK-GGDYDSSSLYLALNK 253 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 I I+ ME A K +IF VEH +E+ GL + A + G+T ER+ Sbjct: 254 VD-INEKILLAYMELAKDYKSTIIFCVNVEHCREVCGLFQQQGIDAQYVLGETSRIEREF 312 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E+FK +F L NV V T G D P++D I + RPT S SL Q++GRGLRL K+ C Sbjct: 313 IVEDFKQGKFPVLCNVGVFTEGTDIPNIDSIILARPTMSQSLMIQMIGRGLRLHKEKSHC 372 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 ++D G + + + F N + D IE Sbjct: 373 HVIDLVGITKSSLVLKATLSGEEPQEKDKRRFTD---QKNGEEDERLDDLEYIE 423 >UniRef50_B3CKZ8 Putative carboxylic ester hydrolase n=1 Tax=Propionibacterium freudenreichii subsp. shermanii RepID=B3CKZ8_PROFR Length = 1054 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 100/417 (23%), Positives = 173/417 (41%), Gaps = 34/417 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLA 56 +P+Q+ +D + ++ ++V TG GK+++ A G +L +A Sbjct: 309 IQPQPHQRIMLDDLAHERQQDFHRNLVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVA 368 Query: 57 HVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSVAR-NLDAFQG-EFSL 113 H KE++ Q + Y + +A+ + + VF SVQS++R NLDA F + Sbjct: 369 HRKEILEQARSTYAHVLNDANFGELLVGGEHPTEHRHVFASVQSLSRMNLDALDPTAFDV 428 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE H E + Y++IL H LLGLTATP R + F Sbjct: 429 MVIDEFHHA---EAATYRRILDHFQPRE----LLGLTATPERADGVNVASFFG------- 474 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 EL L + L P + D ++A S G + +L+R Sbjct: 475 -----DRIASELRLWDALDGDLLAPFHYF-VQWDDTDLRGVKA-SGGEYQAGELSRLYTD 527 Query: 234 QQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAER 289 + +++ + TR + F +VEHA + +L ++G + R Sbjct: 528 NDGRSRLVLAAMRHRILDPTRMKALAFCVSVEHAHYMADVLSQAGVPSVALSGQSSREIR 587 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 + I + + R L V + G D P +D + +LRPT+S +++ Q +GRGLR APGK+ Sbjct: 588 EAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAPGKS 647 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 +LD+ G+ + ++ E V GF+ G + + Sbjct: 648 VLTVLDFVGHQREDFSFEPRLRALTGQGRKQLVDSVEKGFSELPAGCEIQFDKMSQK 704 >UniRef50_Q6C2M8 YALI0F06534p n=1 Tax=Yarrowia lipolytica RepID=Q6C2M8_YARLI Length = 695 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 101/413 (24%), Positives = 166/413 (40%), Gaps = 37/413 (8%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL-----ARLARGRVLVLAHV 58 LR YQ+E + A L+ K + L TG GK+++ A L A+ +VL+L H Sbjct: 28 DLRKYQKECISACLDALNAGKRRIAVSLATGGGKTVIFANLLNQIAAKNTGNKVLILTHR 87 Query: 59 KELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA-RNLDAFQG-EFSLLI 115 KEL Q + + + G + VV VQ++ + L+ +F +I Sbjct: 88 KELATQAQNQISRFNPDLKVEIEMGTTVADPSADVVVAGVQTLQGKRLEQLDPTDFKAII 147 Query: 116 VDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DE H Y I+ H + ++G TAT FR + + Sbjct: 148 IDEAHHAAS---QSYLNIIQHFKASKAKSDVAVIGFTATLFRTDTKSLTKA--------- 195 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 F +Y+L MI G+L+ + + D + ++ + G F + L++ + Sbjct: 196 ----FDHVVYDLSFMDMINDGWLSSVK-FSTVISMADLTEVEIGAAGDFKTSSLSK-VVN 249 Query: 234 QQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAER 289 R+ + A K ++F V+H +++V L ++ +TG T R Sbjct: 250 TDRMNSLVFRTWQNMTAKHGYKSTIVFCVDVQHVRDLVELFRSQGINAEGVTGTTKPKTR 309 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 +I+ FK+ L N V T G D P++DL+ + RPT+S L Q++GRGLRL PGK Sbjct: 310 QAIIDEFKSGDIPVLFNCGVFTEGTDIPNIDLVILNRPTKSKGLMMQMIGRGLRLHPGKD 369 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGT 402 ++D G P +P C F K Sbjct: 370 HTAVVDLVGTV-----PAGMVTAPSLLGLPSGHHCDRASFEELLEEKKKTKDP 417 >UniRef50_D2LJT9 Type III restriction protein res subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJT9_RHOVA Length = 473 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 117/468 (25%), Positives = 198/468 (42%), Gaps = 54/468 (11%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAH 57 M F LRPYQ + + T + R ++ LPTG GK+ + A +A + RV+ H Sbjct: 1 MAFALRPYQAKLITDTRDALRE-AKSVLVQLPTGGGKTAIAAYMAGSAAKRKKRVVFGCH 59 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +EL+ Q +Q +G+ + AA + S+ ++A+ LD + L + D Sbjct: 60 RRELIKQTMKTFQKVGIPFGVIAADFTPDPRQ-PIQIASIPTLAKRLDRYPAP-DLYVPD 117 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H G + + +++ + +GL+ATP RL + ++ Sbjct: 118 EAHHAG---AATWAEVIDSF--ARRGTKTVGLSATPERLDGTGLGRW------------- 159 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F +Y ++I++G+L+P D + ++ ++ G F++A L I Sbjct: 160 FDTMVYGPSTAWLIENGFLSPYRLFAPGT--IDVTGIK-RTAGDFNKAALEER-ASTSAI 215 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFK 297 T + + FA R+ M+F +++H+ +V A D RD LI F+ Sbjct: 216 TGNAVEHYARFARGRR-AMVFCVSIKHSMSVVERFQAAGFRAAHIDGKSENRDELIAAFE 274 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + + L +V +++ GFD P ++ +LRPT+S++LY Q VGR LR PGKT+ +ILD+A Sbjct: 275 TGQIQILCSVDLVSEGFDLPALECAILLRPTQSLALYLQQVGRALRTHPGKTEAIILDHA 334 Query: 358 GNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFED 417 GN P +G P + G+ T +R ++ Sbjct: 335 GNS----LPREQGGRGHGL--------PDDDRIWSLDGRATK---------KRASEDDDE 373 Query: 418 DDGHREQCDFRFRFK----NCPQCNAENDIAARRCRECDTVLVDPDDM 461 + QC FR CP C A R E L + D Sbjct: 374 ESVPTRQCPICFRVHAPAPVCPNCGHSYPTAGRTIEELAGELQEIDRA 421 >UniRef50_A9DEN3 NTP dependent helicase n=1 Tax=Yersinia phage PY100 RepID=A9DEN3_9CAUD Length = 572 Score = 345 bits (886), Expect = 3e-93, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 255/570 (44%), Gaps = 51/570 (8%) Query: 33 TGAGKSLVIAELAR---LARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESH 89 GAGK+ +I+++A GRV++LAH L Q + + + A +F+A +K+ Sbjct: 5 PGAGKTFMISDIAANTYRKGGRVVILAHQPVLAGQTYDELYEHDVPAAMFSAKFGKKQV- 63 Query: 90 GKVVFGSVQSVARNLDA-FQGEFSLLIVDECHRIG-DDEESQYQQILTHLTKVNPHL--- 144 GKV GSV +VA L++ F LL++DE H++ ++E SQY +I+ H T V Sbjct: 64 GKVTVGSVGTVANALNSHFMQPVDLLLIDEGHQVPVEEERSQYMKIINHFTCVAQQAGRI 123 Query: 145 -RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER-- 201 ++ T +PFR + + G K + D IY++ + + G+L+PP Sbjct: 124 CHIITYTGSPFR------FCTRLDNLYIGPRKLFWEDIIYDISSTKLTEMGFLSPPVFGF 177 Query: 202 LDMPVVQYDFSRLQAQSNG-LFSEADLNRELKKQQRITPH--IISQIMEFAATRKGVMIF 258 D YDFS ++ +S +SE +LN + + I++++++ R +IF Sbjct: 178 PDKDDAAYDFSAIKERSGTWEYSEEELNAIVNSEDGKLKLHKILAEVIDKTKDRNMRIIF 237 Query: 259 AATVEHAKEIVGLLPAEDAA-----LITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTG 313 A+T HA+E+ L A L+T D+ E+D +E K +L+NV+ LTTG Sbjct: 238 ASTKAHAREVKRALIAMGVEENQIGLVTDDSSEQEKDFAMEGAKKGTISWLINVSCLTTG 297 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG--------KTDCLILDYAGNPHDL-- 363 FDAP +D + LRP S++L Q +GRG RL K + L+LD+AG L Sbjct: 298 FDAPLIDCVIFLRPVGSLTLLIQCMGRGARLLHPWMKEAGYIKDNYLVLDFAGVFDRLGY 357 Query: 364 -YAPEVGTPKG--KSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 + + KS+ CP C N G LI++ E + Sbjct: 358 MFDDPLLGQADLTKSEKKGELQQCPRCATWN-GENARRCRG-LIKNIREDNPAALEAIED 415 Query: 421 HREQCDFRF-RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGM 479 +CDF F + CP+C END + CR+C L+DP+ L D + GM Sbjct: 416 IDGRCDFFFIQGTICPECGTENDKTTKNCRKCKHELIDPNQALLHKAYSDDEMR-EVVGM 474 Query: 480 SLQHGHDEKGEWLKITYYDEDGADVSERFRL---QTPAQRTAFEQLFIRPHTRTPGIPLR 536 ++ + G ++ + + + + Q+ + F+ + + P Sbjct: 475 TMGIAANG-GLRVEFQMKEPNKQHGNPNIFFPPIKGDVQKRIWNNTFVDIYVK-PEFKHY 532 Query: 537 WITAAD---ILAQQALLRHPDFVVARMKGQ 563 + + ++ Q +R P + R+ + Sbjct: 533 FYNCKNYDTVIKLQRAVRCPIEIAYRINEK 562 >UniRef50_B9ZQ48 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ48_9GAMM Length = 678 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 178/612 (29%), Positives = 282/612 (46%), Gaps = 65/612 (10%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR----------GRVLVL 55 RPYQ+EAVD + P +IV+PTGAGKS VIA ++ + R +VLVL Sbjct: 19 RPYQREAVDCYTRWVVSTREPLLIVMPTGAGKSWVIAGISAVLRQLAYEKTGLRKKVLVL 78 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG-EFSLL 114 A ELV QNHAK +A G +A IF AG K +++ + ++V N++ EF+ + Sbjct: 79 APSAELVGQNHAKMEASGFKASIFCAGAGDKSHSEDIIYATPETVRVNIEELMEYEFAGV 138 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 ++DE HR +Q + + + NP++R+ GLTATP+RL +G+IY+ H + Sbjct: 139 LIDEAHRTS----NQIIEAIDTIRSRNPNVRVAGLTATPYRLTEGYIYRQDKHLDLPPMS 194 Query: 175 KAL-----FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 L F IYE+ Y+I+ GY+ PP D+ QYD ++L ++ + Sbjct: 195 DDLTLDPYFSYMIYEVSAHYLIEQGYILPPIFGDV-TAQYDTTKLVRNRTANWTNESSDE 253 Query: 230 ELK--KQQRITPHIISQIM-EFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPG 286 + + I+ ++ + R ++F ++HA+ ++ LLP + +I+ TP Sbjct: 254 VFVHGNARDLAQEIVKEVKQKIRGGRHSAILFCQNIKHAEMVLSLLPPSQSGMISHKTPR 313 Query: 287 AERDVLIENF-KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 R +I +F + + F+YLVNV+ LTTGFD VD+IAILR T S SL+QQI+GRGLRL+ Sbjct: 314 RVRRQIIADFHRKKAFKYLVNVSTLTTGFDVAAVDVIAILRATHSASLFQQILGRGLRLS 373 Query: 346 P--GKTDCLILDYAGNPHDL------YAPEV--GTPKGKSDNVPVQVFCPACGFANTFWG 395 P GK DCL+LDYA N ++PE+ P + ++ ++V CPAC N F Sbjct: 374 PETGKEDCLVLDYANNLGRFCPRGDPFSPEIRAALPSDREGSMRIEVDCPACAGTNWFQA 433 Query: 396 KTTADGT-----------------------LIEHFGRRCQGWFEDDDGHREQCDFRFRFK 432 L H G +C + E + +C+ R+ Sbjct: 434 VDLPGTEIDAQGYLRSIENGMPVLTALGERLAGHIGVQCTNFVEGPNQRLVRCEHRWSSV 493 Query: 433 NCPQCNAENDIAARRCRECDT----VLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEK 488 CP C N + C +C+T L + DA + R M+ + +K Sbjct: 494 ECPACGTLNTTYDQWCVKCETILGAALARMRTRAQHGDTTYDARIARVRDMTARIRPTKK 553 Query: 489 GEWLKITYYDEDGA---DVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILA 545 + + D E + +++ P + P +W T + Sbjct: 554 QQEAVVLTLDIHELPRIKEGEDGNPELEETSPRTINVWMSPEWKHPSAQRQWSTFIEHCV 613 Query: 546 QQALLRHPDFVV 557 +R P + Sbjct: 614 LGGPVRTPSDLT 625 >UniRef50_B1IDR5 Restriction/helicase domain protein n=19 Tax=cellular organisms RepID=B1IDR5_CLOBK Length = 1002 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 90/418 (21%), Positives = 168/418 (40%), Gaps = 49/418 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+ + +++ TG GK+ + EL R L + H +++ Q Sbjct: 260 QVEAIQGLEKLRENGQDKGLLISATGTGKTYLSAFELRNYNPKRALFIVHREQIAKQALN 319 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIG 123 ++ G + K+ +F ++Q+++++ L +F + EF +I+DE H+ G Sbjct: 320 SFRNVFGDTRSMGILSGTSKDVDKDFIFCTIQTLSKDEVLQSFGKNEFDYIIIDEVHKAG 379 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 + YQ+I+ + LLG+TATP R I++ + + Y Sbjct: 380 ---ANSYQKIVNYFNPKF----LLGMTATPERSDDFDIFKMFNY------------NIAY 420 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ L P + V D L +++ + A+ HII Sbjct: 421 EIRLQRALEEDLLCPFHYFGVSDVTIDGIELDDKTDFKYLVAE---------ERVKHIID 471 Query: 244 QIM--EFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFKAQ 299 +I + R +IF + + AKE+ + + + TG++ ER+ IE + Sbjct: 472 KINFYGYCGERVKGLIFCSDKKEAKELSDIFNTKGYKTVGLTGESSQEEREKAIERLEQD 531 Query: 300 R----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR K +I+D Sbjct: 532 ETLNSLDYIFTVDIFNEGVDIPSVNQVVMLRPTKSSIIFVQQLGRGLRKNKFKEYVVIID 591 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPV--------QVFCPACGFANTFWGKTTADGTLIE 405 + GN + + + ++ N P C N I+ Sbjct: 592 FVGNYNSNFLIPIALSGDRTFNKDTIRKYVMEGTRVIPGCSTINFDEISKKKIFESID 649 >UniRef50_A5A3T1 BcepGomrgp42 n=1 Tax=Burkholderia phage BcepGomr RepID=A5A3T1_9CAUD Length = 600 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 167/637 (26%), Positives = 249/637 (39%), Gaps = 104/637 (16%) Query: 2 IFTLRPYQQEAVDATLNHFRRH--KTPAVIVLPTGAGKSLVIAELARLARG-----RVLV 54 + R YQ VD + H R KT A+++ PTG GKS+VIA G R ++ Sbjct: 1 MIIPRDYQGYGVDKIIEHIYRSGPKTNALLLYPTGTGKSVVIALAVARLFGDFSGTRAMM 60 Query: 55 LAHVKELVAQNHAKYQALGLEA--DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS 112 L H KELV QN+ K + EA I+A GLKRKE + FGS+QSV + F Sbjct: 61 LTHSKELVGQNYKKLKEAWNEAPVGIYADGLKRKEYYYPCTFGSIQSVYNKPELFAP-LH 119 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVN-----PHLRLLGLTATPFRLGKGWIYQFHYH 167 ++ +DE H + D++ESQY+ + +T++N P + GLTAT +R+ +G + Q Sbjct: 120 VMFIDEAHMVSDNDESQYRSFINGVTEINAKHGLPPPVVYGLTATGYRMKQGMLTQ---- 175 Query: 168 GMVRGDEKALFRDCIYELPLRYMIK----HGYLTPPERLDMPVVQYDFSRLQAQSNGLFS 223 E LF + + + GYL PP V+ D S+++ + G ++ Sbjct: 176 -----GENPLFEEILVDCTSMEAFNWFFSEGYLVPPIPRPSKNVKVDLSKIRITA-GEYN 229 Query: 224 EADLNRELKKQQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLL--PAEDAAL 279 E D +E Q I II + + FA R +IF++ VEHA+ + L E A Sbjct: 230 EKD-QQEAFDQDPINRAIIDEALAFAASENRHKGIIFSSGVEHARHLCEELIRRGESATW 288 Query: 280 ITGD-TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 + ERD I + A F+++VN +LTTGFD P +D++ I R T SV L+ QI+ Sbjct: 289 VASKGMSDTERDKRIAAYLAGEFKWMVNNGILTTGFDCPEIDIMVIARCTRSVGLWVQIL 348 Query: 339 GRGLRLAPG---------------------KTDCLILDYAGNPHDLYAP-EVGTPKGKSD 376 GRG R K +CL+LD+ N L +V PK + Sbjct: 349 GRGTRPFWDTVGEWDLSTREGRLGSIAASPKQNCLVLDFGNNAGRLGCINDVRVPKPREK 408 Query: 377 NVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQ 436 C + DG + Sbjct: 409 ASAGDAPVRICEDQYEI-----------------------NIDGKPVKNSDGSYKVKVQG 445 Query: 437 CNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGM-SLQHGHDEKGEWLKIT 495 C N +A RC C P LV GM + + K + + Sbjct: 446 CGVYNHASATRCWNCGVEF--PRSSHIEMTSSTAKLVKADKGMLEPEETQEFKIDRIVYL 503 Query: 496 YYDE-DGADVSERFRLQTPAQRTAFEQLF----------------IRPHTRTPGIPLRWI 538 Y+ G S + Q F +R +R P + Sbjct: 504 YHTPRHGGASSLKVMYHCGRQVFTTWIAFEADHQYPRYLAGEWWRLRHSSRVPKTTIEAH 563 Query: 539 TAADILAQQALLRHPDFVVARMKGQYWQVREKVFDYE 575 +A + LR P ++A ++ VFD E Sbjct: 564 Q----IALRGELREPRSLIAVTNKPSKDIKNYVFDVE 596 >UniRef50_B7GIH0 N-terminal HKD family nuclease fused to DNA/RNA helicase domain n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GIH0_ANOFW Length = 1059 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 169/383 (44%), Gaps = 32/383 (8%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQN 65 Q++A+ + + T VI+ TG GK+ + A + ++L +AH +EL+ + Sbjct: 314 DMQKKALKNLEHTRKNGNTKGVIIAATGTGKTYLAAFDVKAYNPKKLLFIAHREELLDKA 373 Query: 66 HAKYQALGL-EADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHR 121 ++ + + K+ +F +VQS++++ L+ F+ F +I+DE H Sbjct: 374 IETFKHVIENDHLFGKITGTVKQFDKPYLFSTVQSLSKDETLNRFKQHEFDYIIIDEFHH 433 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 E YQ+++ + LLGLTATP R+ + H + Sbjct: 434 A---EAPTYQKVIRYFRPKF----LLGLTATPERMDGRDVLAICDH------------NV 474 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 +YE+ LR + L P + D+S++ + NG+F EA L + LK +R T I Sbjct: 475 VYEIRLREALDAQLLAPFHYFGISDRTVDYSQIPLK-NGMFDEALLVKALKTNER-TDFI 532 Query: 242 ISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 I I ++ + + F ++HAK + +TG+ R+ +I+ + Sbjct: 533 IEMIRTYSYDGDRIVGLAFCVNIDHAKYMSEQFNKRGYCTTYLTGEHSVEYREQIIKRLE 592 Query: 298 AQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 ++ V + G D P ++L+ LRPTES +++ Q +GRGLR GK +LD Sbjct: 593 NPDDPLEFIFTVNIFNEGIDIPSLNLLLFLRPTESSTVFIQQLGRGLRKVEGKEFVTVLD 652 Query: 356 YAGNPHDLYAPEVGTPKGKSDNV 378 + GN + + +D Sbjct: 653 FVGNYQKSFMIPLALAGQLNDKA 675 >UniRef50_A3JKG0 Putative ATP-dependent helicase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JKG0_9ALTE Length = 868 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 182/536 (33%), Positives = 259/536 (48%), Gaps = 59/536 (11%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR----------GRVL 53 LR YQ EAV A R+ P +I LPTG+GKS VIA LA + + +V+ Sbjct: 49 NLRDYQLEAVLAAAFRIRKTVEPILITLPTGSGKSWVIAALASVVKEMSDARSTKVKKVM 108 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG---E 110 VLAH KELVAQNH K A G +A I++AGL +++ G VVFGS QS+ + F E Sbjct: 109 VLAHSKELVAQNHQKMGAAGYKATIYSAGLSTRDASGDVVFGSRQSIINAVGEFAQLDYE 168 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY---QFHYH 167 FS + VDE H +Q ++I+ L VNP+LR++GLTATP+ LGKG+I+ F Sbjct: 169 FSAVFVDEAH----SMPTQTREIIEALRSVNPNLRVIGLTATPYALGKGYIFAQDTFRDL 224 Query: 168 GMVRG--DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEA 225 +R ++ F + +Y+ + + L PP L Y+ L+ G FSEA Sbjct: 225 EPMRDIYAKEPYFAERVYDKCIEELFADEQLCPP-ILGTISDHYNTEALERTVGGSFSEA 283 Query: 226 DLNRE-LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDT 284 N + Q +T I++ ++ + R GVM FA EHA++I+ LP + AAL+ T Sbjct: 284 SNNAVFVTGQADLTKRIVADVVMQSKKRHGVMFFAQNREHARQILSFLPGDRAALVDSGT 343 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 +R IE+FK+ + +YLV VA L GFDAP+V +IA+L+ TES + +QQI+GRGLRL Sbjct: 344 KAKDRAQFIEDFKSTKLKYLVTVAALAIGFDAPNVSVIAVLKHTESPAFFQQIIGRGLRL 403 Query: 345 AP--GKTDCLILDYAGNP---HDLYAPEV----GTPKGKSDNVP-VQVFCPACGFANTFW 394 P GK DCL+LDY N +L++P + P +P V+V CP C NTF Sbjct: 404 CPEIGKRDCLVLDYGQNVSADANLFSPAIQVRMPKPGLDGPIIPVVEVICPDCDHVNTFR 463 Query: 395 GKTTADGT------------------------LIEHFGRRCQGWFEDDDGHR-EQCDFRF 429 + H G +C + +CD+ + Sbjct: 464 KAAWPQDMEMTDTGFLYHRDTRAIFTDSDNKPMAGHMGAQCGNLLDVPGKKMPVRCDYTW 523 Query: 430 RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGH 485 C C N C C+ L ML R + + + Sbjct: 524 GAILCTACKRRNSHRTDFCVACEEPLSKRAKMLSMTTSRDANYTQRLAKVVSRQRQ 579 >UniRef50_C6R8F6 Type III restriction enzyme, res subunit n=5 Tax=Corynebacterium RepID=C6R8F6_9CORY Length = 1040 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 39/398 (9%) Query: 4 TLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLA------RGRVLVLA 56 T PYQ+E ++A + + + ++V TG GK++V A R R R+L +A Sbjct: 317 TPYPYQEEMLEALRSEREVKDRHRNLLVAATGTGKTVVAALDYRNLCEQWKRRPRLLFVA 376 Query: 57 HVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSV-ARNLDAF-QGEFSL 113 H KE++ Q +Q + +AD + VF SVQS+ A L F + Sbjct: 377 HRKEILQQARRTFQEVLKDADFGELLVDGAEPRRWDYVFASVQSLSASRLQNLNSKHFDV 436 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +++DE H + Y+ +L HL LLGLTATP R + ++ + Sbjct: 437 VVIDEFHHA---QAPTYKALLDHLQPQE----LLGLTATPERGDGENVQKYFDY------ 483 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQA-QSNGLFSEADLNRELK 232 +EL L ++ L P + D S L + ++ +L+ Sbjct: 484 ------RVAHELRLWDALRLQLLVPMHYYGIAD-GTDLSSLTWSREKKDYNTEELSEFYI 536 Query: 233 KQ-QRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 K ++ T I++++ + F T+ HA+ + A +T D Sbjct: 537 KAGEKRTRFIVNELNRRIFDLSDMKAIGFCVTIAHAEYMARQFQHFGIPARAVTSDLTAT 596 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER I++ + + L +V + G D P V+ + +LRPT+S ++ Q +GRGLRL+PG Sbjct: 597 ERAQAIKDLENGDVKVLFSVDIFNEGVDIPAVNTLLLLRPTQSPVVFLQQLGRGLRLSPG 656 Query: 348 KTDCLILDYAGNPHDLYAPEV---GTPKGKSDNVPVQV 382 K C+ILD+ G H + E + + + ++ Sbjct: 657 KDSCVILDFIGQQHVDFDFERKFHALTRKRGKRLAEEI 694 >UniRef50_C5DHE1 KLTH0E03630p n=2 Tax=Saccharomycetaceae RepID=C5DHE1_LACTC Length = 672 Score = 341 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 161/370 (43%), Gaps = 35/370 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-------RVLVLAH 57 LR YQ E +D L + + + L TG GK+++ + L R R L+L H Sbjct: 33 LRDYQHECIDRCLESISQGRRRIGVSLATGGGKTVIFSNLIDRLRRESGKSGYRTLILVH 92 Query: 58 VKELVAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEF-SLL 114 +EL Q QA GL I K + VV SVQS+ R L+ + L+ Sbjct: 93 RRELAQQACRVLQAFFPGLNFQIEMGNYKCDINSADVVVASVQSLIRRLERYDPSCIDLI 152 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHL--RLLGLTATPFRLGKGWIYQFHYHGMVRG 172 I+DE H Y +IL H + ++G +AT R + Sbjct: 153 IIDEAHHAA---AKSYLRILEHFKANHKDSILPVVGFSATFERADNKALS---------- 199 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 A+ + +Y + MI +L + V D S + + F+ L++ + Sbjct: 200 ---AVIDEIVYHRGILEMIDDKWLCEGRFTTVSV-SLDLSDVAV-TGSDFNIDGLSKVVN 254 Query: 233 KQQRITPHIISQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 ++ + ++ ++ + ++F ++H + + L A +TG T +E Sbjct: 255 TKE-VNKVVLQTYLQKRDLHKLRSTLLFGCDIKHIETLHSLFVKHGVNAQYVTGKTRQSE 313 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 RD ++E+FK R L+N V T G D P+VD I + RPT+S SL Q++GRGLRL K Sbjct: 314 RDAIVEDFKRGRIEVLMNCGVFTEGTDIPNVDSILLCRPTKSRSLLVQMIGRGLRLHHSK 373 Query: 349 TDCLILDYAG 358 C I+D+ G Sbjct: 374 KHCHIIDFVG 383 >UniRef50_B1MAA8 Type III restriction protein res subunit n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1MAA8_METRJ Length = 462 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 113/477 (23%), Positives = 182/477 (38%), Gaps = 65/477 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHV 58 + LR YQ AV + ++VLPTG GK++V + RV+VL H Sbjct: 1 MIQLRDYQSAAVARIREAYAERSRRILLVLPTGGGKTIVFCWIGAAVAARGKRVVVLVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 EL+ Q +G+E + AAG + V SV ++AR L A L+++DE Sbjct: 61 AELLEQVSKALAGMGVEHGLIAAGHPT--TEAAVQVASVATLARRLAAGFAPPDLIVIDE 118 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + +++ P +LG++ATP RL + + F Sbjct: 119 AHHA---VAGTWNRVID----AAPESFVLGVSATPARLDGRGL-------------GSAF 158 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + + + G+L P P + D S+++ ++ G + L + + Sbjct: 159 DVMVEGPTVAELTAAGHLVPARVFA-PPERLDLSKIKVRA-GEYDARQLAEAMAG-GTLI 215 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 ++ AA R V F A++EH++ + AA + G T AER LI Sbjct: 216 GDAVAHYRRLAAGRPAV-AFCASIEHSQIVAARFRGAGVAAAHVDGKTDAAERRRLIAGL 274 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 R L NV ++ G D P + + +LRPT S + Y Q VGR LR + GK++ ++LD+ Sbjct: 275 GTGELRVLTNVDLIGEGVDVPAIGAVILLRPTRSEARYLQSVGRALRPSAGKSEAIVLDH 334 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 AG P+ +L + RR G E Sbjct: 335 AGATWMHGLPDAPRA-----------------------------WSLADQPARRSTGRTE 365 Query: 417 DDDGHREQCDFRFRFKN-----CPQCNAENDIAARRCRECDTVLVDPDDMLKAALRL 468 QC+ F+ C C A +E + LV+ +R Sbjct: 366 APGERLRQCEACGAFEPPGTPACGTCGASLKPCPAEIQEAEAELVERQRQQVEQVRR 422 >UniRef50_A9GJE0 Putative helicase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GJE0_SORC5 Length = 1030 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 34/372 (9%) Query: 3 FTLR--PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVL 55 LR P+Q+ ++ R ++V TG GK+++ A R R+L + Sbjct: 307 IELRAEPFQERLLEQIALSRERGHHRNLLVSATGTGKTVMAAIDYARLREALPRARLLFV 366 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSVARN-LDAFQG-EFS 112 AH E++ Q+ A ++ + R + VF S+QS++ LD F Sbjct: 367 AHRGEILEQSLATFRHGLRDHAFGELWVGGRHPRRFEHVFASIQSLSAAGLDDLDPSHFD 426 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++I+DE H Y+ +L + V LLGLTATP R + + Sbjct: 427 VVIIDEFHHAA---APSYRVLLERVRPVE----LLGLTATPERSDGLPLLGWFD------ 473 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 EL L I L P + D + + + L++ L Sbjct: 474 ------DRIAAELRLWDAIDQHRLVPFVYYGIHD-GLDLRDVPWRRGRGYDVDGLSKLLT 526 Query: 233 KQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 +++Q++ + + + F ++EHA+ + + A + GD+P E Sbjct: 527 ANDVWARQVVAQLVAHVDDTRTIRALGFCVSIEHARFMARVFHEAGVAATAVWGDSPDDE 586 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R + + A+R + +V + G D P VD + +LRPT+S +L+ Q +GRGLR + GK Sbjct: 587 RRAALADLGARRINVVFSVDLFNEGIDVPAVDTLILLRPTDSPTLFLQQLGRGLRRSAGK 646 Query: 349 TDCLILDYAGNP 360 T C +LD+ G+ Sbjct: 647 TVCTVLDFVGHH 658 >UniRef50_Q59PU6 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=Q59PU6_CANAL Length = 623 Score = 340 bits (873), Expect = 8e-92, Method: Composition-based stats. Identities = 110/383 (28%), Positives = 177/383 (46%), Gaps = 29/383 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LR YQQEA+D+ L I + TG+GK++V + L L +G+ LVL H + Sbjct: 34 FALRDYQQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQ 93 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLDAF-QGEFSLLI 115 EL+AQ++ K + + + R + V+ SVQS+A + F +F +I Sbjct: 94 ELIAQSYDKITRINPDLRVGIEMAESRARLNDDVIVASVQSLATNKRFTKFNPDDFKTII 153 Query: 116 VDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DECH YQ+IL H N ++ ++G TAT R K Sbjct: 154 IDECHHA---VAPTYQKILKHFKADTKNTNINVIGFTATLARADKQ-------------M 197 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 KA+F +++ L MI + L + + + + S ++ + + L + K Sbjct: 198 LKAVFDRIVFQRSLATMIFNKELASFKASKLYFKRLNLSNVKMK-GKDYDPKALYNAVLK 256 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 I H++ ME K +IF VEH +E+ LL + A + +T +ER Sbjct: 257 AG-INEHLLLAYMELEKEYKSTLIFCINVEHCREVCALLQKQGVDARYVISETSNSERKT 315 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++ +FK +F L NV V T G D P++D I + RPT+S L Q++GRGLRL K+ C Sbjct: 316 IVADFKQGKFPVLCNVTVFTEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKEKSHC 375 Query: 352 LILDYAGNPHDLYAPEVGTPKGK 374 ++D G + + + Sbjct: 376 HVVDLVGIMDENLELKAILEGKQ 398 >UniRef50_B8MIT3 DEAD/DEAH box helicase, putative n=1 Tax=Talaromyces stipitatus ATCC 10500 RepID=B8MIT3_TALSN Length = 667 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 161/370 (43%), Gaps = 33/370 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LR YQ+E++ + L H + + L TG+GK+++ +L R L++A Sbjct: 59 IKLRDYQEESIQSVLEHLEKGHNRLGLSLATGSGKTVIFTQLIGRVPPRNGGANQTLIIA 118 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FS 112 H KELV Q + + I G + + S++S++ ++ F F Sbjct: 119 HRKELVEQAARHCRLAYPDKSIEIEMGANKASGAADITVASIRSLSSKDRIEKFDPSLFK 178 Query: 113 LLIVDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I QY+Q L++ N L+G++AT FR + Sbjct: 179 LVLVDEAHHI---VAPQYRQALSYFSLTKPSNNAPVLVGVSATFFRFDGLKL-------- 227 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 + +Y MI +L+ + D SR+ S+G F+ L+ Sbjct: 228 -----GSAIDHIVYHKDYIDMIGEKWLSDAIFTTVK-THVDLSRVARDSSGDFATRALSE 281 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 + + + + A+ R+ ++F +EH ++ A IT +TP Sbjct: 282 AV-NTATVNDVTVRSWLTHASDRRSTLVFCVDIEHVHQLTEAFRDNGIDARYITANTPRQ 340 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 R+ +E FK + L+N + T G D P++D + + RPT S SL Q++GRGLRL P Sbjct: 341 TRNEELEAFKRGEYPVLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPE 400 Query: 348 KTDCLILDYA 357 K +C I+D Sbjct: 401 KENCHIIDMV 410 >UniRef50_C4ZJT0 Type III restriction protein res subunit n=5 Tax=Proteobacteria RepID=C4ZJT0_THASP Length = 1287 Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 98/373 (26%), Positives = 157/373 (42%), Gaps = 30/373 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 QQEA+ A ++VL TG GK+ + A A RVL +AH +E++ Q Sbjct: 404 QQEALAALTRTRHDGYLRGLVVLATGLGKTWLAAFDAEQIGARRVLFVAHREEILKQAAD 463 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRIGD 124 + + A I + +++ V+ SVQ++ R +L+ F F +I+DE H Sbjct: 464 TFVRIRPRARIGFYMGQARDTQVDVLCASVQTLGRNAHLERFAPQHFDYIIIDEFHHAA- 522 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y+++L H LLGLTATP R + I + + + Sbjct: 523 --APTYRRLLAHFAPQF----LLGLTATPDRTDQSDILSLCD------------DNLVLD 564 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I+ G L P + D+ + + NG F L+ +L H + + Sbjct: 565 RNLFAGIEAGLLAPFHYFGVWDASVDYEEIPWR-NGRFDPEKLSNKLAT-LARARHALKE 622 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFR 302 + A R + F +V HA+ + + AA + + A R +E R Sbjct: 623 WRKRAQQR--TLAFCVSVRHAEFMATQFRLQGIEAAAVYAGSELA-RGEALEQLAEGRLA 679 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD 362 + +V + G D P +D + +LRPTES L+ Q +GRGLR A GK ++LD+ GN H Sbjct: 680 VIFSVDLFNEGVDLPAIDTVLMLRPTESKILFLQQLGRGLRRAEGKERLVVLDFIGNHHS 739 Query: 363 LYAPEVGTPKGKS 375 + S Sbjct: 740 FLHKPQALGQIGS 752 >UniRef50_C4YDS3 Putative uncharacterized protein n=1 Tax=Candida albicans RepID=C4YDS3_CANAL Length = 646 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 109/383 (28%), Positives = 176/383 (45%), Gaps = 29/383 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LR YQQEA+D+ L I + TG+GK++V + L L +G+ LVL H + Sbjct: 34 FALRDYQQEAIDSILEASESGVKRQAIEMATGSGKTVVFSHLIPLLKGKGTKTLVLEHTQ 93 Query: 60 ELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLDAF-QGEFSLLI 115 EL+AQ++ K + + + R + V+ SVQS+A + F +F +I Sbjct: 94 ELIAQSYDKITRINPDLRVGIEMAESRARLNDDVIVASVQSLATNKRFTKFNPDDFKTII 153 Query: 116 VDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +DECH YQ+IL H N ++ ++G TAT R K Sbjct: 154 IDECHHA---VAPTYQKILKHFKADTKNTNINVIGFTATLARADKQ-------------M 197 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 KA+F ++ L MI + L + + + + S ++ + + L + K Sbjct: 198 LKAVFDRIAFQRSLATMIFNKELASFKASKLYFKRLNLSDVKMK-GKDYDPKALYNAVLK 256 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 + H++ ME K ++F VEH +E+ LL + A +T T +ER Sbjct: 257 AG-VNEHLLLAYMELEKEYKSTLVFCINVEHCREVCVLLQKQGVDARYVTSKTSNSERKT 315 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E+FK +F L NV V G D P++D I + RPT+S L Q++GRGLRL K+ C Sbjct: 316 IVEDFKQGKFPVLCNVTVFAEGTDIPNIDSIILARPTKSKPLMIQMIGRGLRLHKEKSHC 375 Query: 352 LILDYAGNPHDLYAPEVGTPKGK 374 ++D G + + + Sbjct: 376 HVVDLVGIMDENLELKAILEGKQ 398 >UniRef50_A7HMW9 Type III restriction protein res subunit n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMW9_FERNB Length = 848 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 100/442 (22%), Positives = 183/442 (41%), Gaps = 42/442 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 QQE + N T A++VL TG GK+ + A + RV +AH +E++ Q + Sbjct: 243 QQEVLRELNNTRAEGFTKALVVLATGVGKTFLAAFD-SMQFNRVFFIAHREEILKQAKST 301 Query: 69 YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQGE-FSLLIVDECHRIG 123 ++ + + + K++ +VF SV ++ + N D F + F +I+DE H Sbjct: 302 FEKVRPTSRMGFFTSSGKDTDADIVFASVFTIGKEEYLNDDYFPPDYFDYIIIDEFHHAA 361 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 + Y+++L++ LLGLTATP R+ +++ + + +Y Sbjct: 362 AE---SYKKLLSYFNPKF----LLGLTATPERMDGKDVFEICDY------------NVVY 402 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 +L L I GYL P + + DFS++ +G + E +L + L +R ++ Sbjct: 403 DLRLPDAINRGYLVPFHYYGIYD-ETDFSKIPII-DGHYKEDELEKALMLHKR-ADLVLQ 459 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTPGAE--RDVLIENFKA 298 + +++ RK + F + HA+ + A+ +G+ R IE K Sbjct: 460 KYVKYG--RKRAIGFCVSRNHAEYMADYFNKNGVNACAVYSGEQGRNALPRWEAIEKLKN 517 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + + V V G D P ++++ LRPTES +++ Q +GRGLR A GK ++LD+ G Sbjct: 518 REIDVIFTVDVFNEGVDIPEIEMVMFLRPTESTTVFIQQLGRGLRKAKGKKYLIVLDFIG 577 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGT-------LIEHFGRRC 411 N + + + D ++ + + LI + Sbjct: 578 NYKNAVLVPFILTQKEYDISLLRRELDTKKLSEVLELPKGCEVEFEFKVVDLIRKMAKEL 637 Query: 412 QGWFEDDDGHREQCDFRFRFKN 433 Q E + K Sbjct: 638 QQIEEIIFNEYLRIKEFLGHKP 659 >UniRef50_A3Z7D3 Putative ATP-dependent helicase n=3 Tax=Chroococcales RepID=A3Z7D3_9SYNE Length = 1052 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 105/391 (26%), Positives = 165/391 (42%), Gaps = 45/391 (11%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLA----------- 48 F LRPY Q+E ++A H ++V TG GK+++ A Sbjct: 315 FNLRPYAYQREMLEALAAERTVHDRWHNLVVAATGTGKTVLAAFDVARLHSDFPERFPAA 374 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSVA-RNLD 105 +L++AH KE++ Q A ++ + + + VF SVQS+A R+L Sbjct: 375 DPPPLLLIAHRKEILQQALATFRQVLRDPAFGELYVDGELPRQWRHVFASVQSLAQRDLA 434 Query: 106 AFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQF 164 F+++IVDE H Y++ L HL LLGLTATP R + ++ Sbjct: 435 EIPADRFAVVIVDEFHHAA---ALSYRRWLDHLRPQL----LLGLTATPERADGLDVLRW 487 Query: 165 HYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSE 224 EL L + G L P + D S L+ + G + Sbjct: 488 FG------------GRIAAELRLWTALDQGLLAPFHYFAVADAT-DLSSLEWRRGG-YVP 533 Query: 225 ADLNRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALI 280 A+L+ R I+S++ + A R + F +VEHA+ + A A + Sbjct: 534 AELSTLYTGDHRRVALILSELEKAVAEPRRMRALGFCVSVEHARFMAERFRAVGLQAEAL 593 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 TP ER + A + L V + G D P +D + +LRPTES ++ Q +GR Sbjct: 594 DASTPSDERREALRRLHAGELQILFAVDLFNEGLDIPSIDTVLLLRPTESAVVFLQQLGR 653 Query: 341 GLRLAP--GKTDCLILDYAGNPHDLYAPEVG 369 GLRL+P GK+ +LD+ G H + ++ Sbjct: 654 GLRLSPETGKSCLTVLDFIGQQHRRFRFDLR 684 >UniRef50_A6LX80 Type III restriction protein, res subunit n=15 Tax=cellular organisms RepID=A6LX80_CLOB8 Length = 845 Score = 338 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 91/442 (20%), Positives = 179/442 (40%), Gaps = 38/442 (8%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 +F + Q EA+ N ++V TG GK+ + A ++ A RVL +AH +E+ Sbjct: 233 LFEPKGAQIEALYELENSREEGFDKGLVVAATGVGKTYLAAFDSKEA-ERVLFVAHREEI 291 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAF-QGEFSLLIV 116 + Q ++ + DI K++ ++F VQ++ + + F + F +++ Sbjct: 292 IKQAAISFKNVRNSDDIGFFYNNTKDNDKSMIFSLVQTLGKDEYLKEEYFTRDYFDYIVI 351 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H Y++I+ + T LLGLTATP RL ++ + Sbjct: 352 DEFHHAVSSN---YRKIIDYFTPKF----LLGLTATPERLDSKDVFSLCDY--------- 395 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + +YE+ L I GYL P + ++ ++ + NG +++ +L L +R Sbjct: 396 ---NTVYEIRLSDAINKGYLVPFRYYGIYDETVNYDEVEFR-NGKYNDKELEEALMLNKR 451 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA---ALITGDTP--GAERDV 291 I++ ++ + R + F + +HA+ + A+ +G+ R Sbjct: 452 G-ELILNHYKKYNSNR--ALGFCTSRKHAEYMAKYFCENRITSLAVYSGENGEYSENRTE 508 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 + + + +V + G D P +D++ LRPT+S +++ Q +GRGLR K Sbjct: 509 ALNKLTKGEVKVIFSVDMFNEGLDIPSIDMVMFLRPTQSPTVFLQQLGRGLRKYKDKKYL 568 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 +LD+ GN K+ + + D +I+ F Sbjct: 569 NVLDFIGNYKKADLLPFLLSG-KTYSRIEAKKGIFNEEEYPEDCRVDFDFRIIDVF---K 624 Query: 412 QGWFEDDDGHREQCDFRFRFKN 433 + ++ + + + R K Sbjct: 625 KLAAKEMNIKDKILEEFLRVKE 646 >UniRef50_B1YFS4 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFS4_EXIS2 Length = 1052 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 169/379 (44%), Gaps = 32/379 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-RGRVLVLAHVKELVAQNHA 67 Q A++ + +T A+++ TG GK+ + A + RVL +AH +L++Q Sbjct: 302 QLPALEQLHRLRLKQQTKAMVIAATGTGKTYLAAFDVKQFDAKRVLFVAHRGKLLSQAEE 361 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 ++ + +A +K+ + +F ++Q+ ++ +L+ F F +I+DE H Sbjct: 362 TFKKIFTDGDATFGRYQANQKDLDKQFIFATIQTFSKEIHLEQFDPNTFDYIIIDEFHHA 421 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 + YQ+IL + T LLG+TATP R+ I++ H + Sbjct: 422 ASE---SYQKILNYFTPQF----LLGITATPERMDGLNIFKLVDH------------NIA 462 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L + LTP + + + Q NGL+ E DL L++ R T +I+ Sbjct: 463 YEIRLYDALAQDLLTPFHYFGIQDDEAIDYEVIPQKNGLYIEKDLVEALERSSR-TEYIL 521 Query: 243 SQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKA 298 + +F + + + F ++HA+ + IT AER+ I+ + Sbjct: 522 EMMTKFGHSGTARVGLGFCVNIDHAEYMAAEFNKHQIESLAITSKQTEAEREHAIQRLED 581 Query: 299 QR--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + ++ V + G D P ++++ LRPTES +++ Q +GRGLR K ILD+ Sbjct: 582 DQDPLSFIFTVDLFNEGVDIPKINVMLFLRPTESPTIFIQQLGRGLRKHKSKEYVTILDF 641 Query: 357 AGNPHDLYAPEVGTPKGKS 375 GN + + +S Sbjct: 642 IGNSQRAFVAPLVLSGQQS 660 >UniRef50_B6QJS8 DEAD/DEAH box helicase, putative n=1 Tax=Penicillium marneffei ATCC 18224 RepID=B6QJS8_PENMQ Length = 666 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 33/370 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LR YQ+E++ + + + + + L TG+GK+++ +L R L++A Sbjct: 59 IQLRDYQEESIQSVIENLGKGHNRLGLSLATGSGKTVIFTQLIHRIPPRNGRADQTLIIA 118 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFS 112 H KELV Q + + + G + + S++S+A ++ F F Sbjct: 119 HRKELVEQAARHCRLAYPDKTVEIEMGATKASGAADITVASIRSLASKGRIEKFDPSYFK 178 Query: 113 LLIVDECHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I QY+Q L + N L+G++AT FR + Sbjct: 179 LVLVDEAHHI---VAPQYRQALEYFGLTEPSNNAPALVGVSATFFRFDGLKL-------- 227 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 ++ +Y MI +L+ + D SR+ S+G F+ L+ Sbjct: 228 -----GSVIDHIVYHKDYIDMIGEKWLSDAIFTTVK-TNVDLSRVAKDSSGDFATRALSE 281 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 + + + + A+ R+ ++F +EH +++ A IT +TP Sbjct: 282 AV-NTATVNDVTVRSWLTHASDRRSTLVFCVDIEHVRQLTEAFRDNGIDARYITANTPRQ 340 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 R+ +E FK + L+N + T G D P++D + + RPT S SL Q++GRGLRL P Sbjct: 341 TRNEELEAFKKGEYPVLLNCGLFTEGTDIPNIDCVVLARPTRSKSLLIQMIGRGLRLHPQ 400 Query: 348 KTDCLILDYA 357 K +C I+D Sbjct: 401 KENCHIIDMV 410 >UniRef50_A3EQ89 Putative helicase n=1 Tax=Leptospirillum rubarum RepID=A3EQ89_9BACT Length = 1054 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 95/402 (23%), Positives = 160/402 (39%), Gaps = 36/402 (8%) Query: 3 FTLRPY--QQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLV 54 F +RPY QQE +D ++V TG GK+++ A R R + L Sbjct: 315 FDIRPYPFQQEILDRLEVEREVNGSFRNLVVSATGTGKTVIAAFDFRRFREKRPDATFLF 374 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGL-KRKESHGKVVFGSVQSVARN-LDAFQG-EF 111 +AH KE++ Q+ ++ + + + + + H + VF S+QS+ R LD F Sbjct: 375 VAHRKEILEQSLKHFRHILEDRNFGELWVAGSRPVHVRHVFASIQSLDRAELDRISPERF 434 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 +++DE H Y+++L L LLGLTATP R + ++ Sbjct: 435 DYVVIDEIHHG---MAPTYRRLLETLKPRI----LLGLTATPERSDGLDVRRYFN----- 482 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 E+ L I L P + + D+ L+ + G + +L + L Sbjct: 483 -------DRTAAEIRLGEAIDRNLLCPFHYFGITD-EVDYRNLRWE-RGQYDRRELEKVL 533 Query: 232 KKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGA 287 ++ + E+ + F V HA+E+ L I + D+ Sbjct: 534 TGNDLRNRSVLRALREYCPDLSGVRGIGFCVGVRHAEEMSDLFNRAGIPSIALSADSSRE 593 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 RD + + ++ V + G D P VD + LRPTES++++ Q +GRGLR G Sbjct: 594 VRDAVSARISSGELTFVFVVDLYNEGIDIPAVDTVLFLRPTESLTIFLQQLGRGLRQRWG 653 Query: 348 KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGF 389 KT +LD+ G+ H+ + GF Sbjct: 654 KTHLTVLDFVGHMHEKFDFSSRLSALSGQPAYRIQKEIEEGF 695 >UniRef50_A6EW89 Helicase-related protein n=3 Tax=Gammaproteobacteria RepID=A6EW89_9ALTE Length = 1282 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 154/370 (41%), Gaps = 32/370 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 QQEA++A ++VL TG GK+ + A A R+L +AH +E++ Q Sbjct: 400 QQEALEALDLTRMEGYRRGLVVLATGLGKTWLSAFDAAQMGARRILFVAHREEILYQAAE 459 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRIGD 124 Y + + + K+++ ++ SVQ++ + +L+ F F ++VDE H Sbjct: 460 TYLRIKPNSRVGFYMGKQRDRTVDILCASVQTLGKETHLERFDPRHFDYIVVDEFHHAA- 518 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y ++L + LLGLTATP R + I + ++E Sbjct: 519 --APVYHRLLNYFAPQF----LLGLTATPDRTDRSDILSLCD------------DNLVFE 560 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 PL +K +L P + D++ + + NG F L +L R + Sbjct: 561 YPLFEGVKRRFLVPFHYYGIYDETVDYTEIPWR-NGKFDPNLLANKLATYGR-AKQVHRV 618 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKAQRFR 302 E +R + F + HA + + + G++ + R +E + + Sbjct: 619 WGEQKQSR--TLAFCVSRVHADFMADQFSRKGVRSAAVHGESEMS-RGEALEKLENGQLD 675 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNP 360 + +V + G D P +D + +LRPTES L+ Q +GRGLR + GK +ILD+ GN Sbjct: 676 VIFSVDLFNEGVDLPAIDTVLLLRPTESKILFLQQIGRGLRKSSATGKDKLVILDFVGNH 735 Query: 361 HDLYAPEVGT 370 Sbjct: 736 RSFLHKPQAL 745 >UniRef50_Q03EF5 DNA or RNA helicase of superfamily II n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EF5_PEDPA Length = 950 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 167/380 (43%), Gaps = 38/380 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 QQ A+ A +N + +I+ TG GK+ + A R + L + H ++++ + Sbjct: 220 QQAALKALINLRSEGQKRGLIISATGTGKTYLAAFDVRNYRPRKFLFVVHREQILRKALL 279 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 ++ + G D KE K VF ++Q+++R L+ + F +++DE H+ Sbjct: 280 SFKNVLGGPADDYGILAGGTKEIDRKYVFATIQTLSRPDILNELKANTFDYILIDEAHKA 339 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ+I+ H LLG+TATP R IY+ + Sbjct: 340 G---AASYQKIINHFKPEF----LLGMTATPERTDDFNIYELFDY------------HIA 380 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ I+ L+ + + +Y+ + + + L ++R+ ++ Sbjct: 381 YEIRLQDAIEEKMLSEFHYIGITDYEYEGQVITDNTP--------LKHLVSRERM-DYVE 431 Query: 243 SQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 QI + V +IF + E A E+ ++ + +TG+ R+ I+ F+ Sbjct: 432 QQIDYYGHDGDQVYGLIFCSRTEEAHEVAQIMTQKGHPTVALTGEDSVDNREATIKKFEN 491 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 YLV V + G D P ++ + +LR TES ++ Q +GRGLR + GK I+D+ G Sbjct: 492 GEIEYLVTVDIFNEGIDIPKINQVIMLRNTESSIIFIQQLGRGLRKSEGKDFVTIIDFIG 551 Query: 359 NPHDLYAPEVGTPKGKSDNV 378 N + Y + ++ N Sbjct: 552 NYQNNYMIPIALTGDQTLNK 571 >UniRef50_A4IPV6 DNA/RNA helicase n=15 Tax=Bacillaceae RepID=A4IPV6_GEOTN Length = 815 Score = 334 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 90/425 (21%), Positives = 176/425 (41%), Gaps = 36/425 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 R Q EA++ + A++V+ TG GK+ + A AR RVL +AH +E++ Sbjct: 222 IRPRFAQVEALERLEAAYEEGYDKAMVVMATGLGKTYLAAFFARRF-SRVLFIAHREEIL 280 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGE-FSLLIVDEC 119 Q ++ + + +K+ + +VF S+ +++ ++L +F+ + F L++VDE Sbjct: 281 RQAKQSFECVIPDRTAGIYDGHQKDGNADMVFASIFTLSMKKHLFSFRPDSFDLIVVDEF 340 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H Y+++L + LLG+TATP R +Y Sbjct: 341 HHAA---ARSYERVLRYFRPEF----LLGITATPDRNDNKDVYAICD------------G 381 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + Y + ++ G+L P + D+S+++ + E +L + ++ ++ + Sbjct: 382 NVAYRIDFIEAVQRGWLAPFHYYGVYD-DTDYSQIKWL-GSRYDEEELLQ-VQLREEMAE 438 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFK 297 +I+ ++ TR ++F +++ A + + R I + Sbjct: 439 NILRAWEQYKKTR--TLVFCSSIRQADFLCEYFRRRGYRTVSLHSKQTTIPRQQAIAMLE 496 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + V + G D P VD + +RPTES++++ Q VGRGLRL GK C+I+D Sbjct: 497 QCELDAIFTVDLFNEGVDIPSVDTLLFVRPTESLTVFTQQVGRGLRLYEGKDYCVIIDLI 556 Query: 358 GNPHD------LYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 GN + L+ + G K K + C + + R+ Sbjct: 557 GNYRNADVKLSLFDTQRGETKKKVRESVMPTVPETCELHLDIQTIHLLEEMRKKRQPRKE 616 Query: 412 QGWFE 416 + + Sbjct: 617 RLLAD 621 >UniRef50_C5DW03 ZYRO0D10802p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DW03_ZYGRO Length = 650 Score = 334 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 161/372 (43%), Gaps = 34/372 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----RGRVLVLAHVK 59 LR YQQ +D L + +K + L TG GK+++ A L + R LVL H + Sbjct: 23 QLRDYQQHVIDKCLESLKDNKRRIGVSLATGGGKTVIFANLIKQLSQQTPHRALVLVHRR 82 Query: 60 ELVAQNHAKYQALGLEADIFAAGLK---RKESHGKVVFGSVQSVARNLDAFQG-EFSLLI 115 ELV Q + A I K + V+ SVQS+ R LD ++ + L+I Sbjct: 83 ELVLQAAQTIKKFMPLARIQIEMGKYVCQDVKDCDVIVASVQSLIRRLDNYESTDIDLVI 142 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H + Y +IL H K P ++G +AT R + Sbjct: 143 VDEAHHA---VANSYLRILDHFKKDIP---VVGFSATFERADHKALSTVM---------- 186 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + +Y + MI +L + + + S +A + F L+R + + Sbjct: 187 ---DEIVYHKGILEMINDNWLCEGKFTTVKIDADLNSVERASGSDDFKLDQLSRVMNIPE 243 Query: 236 RITPHIISQIMEFAATRK----GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 I ++ + + + ++FA ++H K + L + A +T +T ER Sbjct: 244 -INGLVLKTYLHKSKEQPGGFNSTLLFAVDIKHVKALHHLFVSYGIKAECVTSETKARER 302 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 D +I+NFK + L+N + T G D P +D I + RPT S SL Q++GRGLRL K Sbjct: 303 DQIIDNFKKGDVKVLINCGIFTEGTDMPGIDCILLCRPTRSRSLLVQMIGRGLRLHHSKD 362 Query: 350 DCLILDYAGNPH 361 C I+D+ G Sbjct: 363 FCHIIDFVGASD 374 >UniRef50_C8WYC9 Type III restriction protein res subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYC9_ALIAD Length = 581 Score = 334 bits (856), Expect = 7e-90, Method: Composition-based stats. Identities = 115/372 (30%), Positives = 168/372 (45%), Gaps = 32/372 (8%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL------ARGRVLV 54 M LRPYQQ AVDA + +IVLPTGAGK++V +AR +LV Sbjct: 1 MAIQLRPYQQAAVDAFFQALAEGRKRQLIVLPTGAGKTIVFGSVARRFHEEVSRERPILV 60 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEFS 112 +AH EL+ Q K + EA I R E G V+ S Q++ R + + Sbjct: 61 IAHRTELLDQAEQKIHFVWPEAFIGRIQGARNEQLGDVLLASTQTLVAGRRI----PQPG 116 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+I DECH + + L P LLG+TATP R R Sbjct: 117 LIIYDECHHSRAEGALGVLERLGVFESDGP--PLLGVTATPSRSD-------------RT 161 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 + +F YE + MI GYL+ + + V + ++ + G ++ DL+ + Sbjct: 162 ELGDIFEHLTYERTILDMIMDGYLSDVRGVKVEVPGLNLGAIRTTA-GDYNSKDLSYVMN 220 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERD 290 + + ++ ++ A + ++FA V+HA + A + G ER Sbjct: 221 IESAL-DAVVDAVVTHAP-GRKCLVFAVDVKHAHALAERFQKRGIACAAVDGAMKAEERA 278 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 +++ F R LVN +LT G+D P VD + I RPT S +LY Q+VGR LRL P KTD Sbjct: 279 AILQAFAENRLCVLVNCQILTEGYDQPDVDCVVIARPTRSQALYVQMVGRALRLHPDKTD 338 Query: 351 CLILDYAGNPHD 362 L+LD G D Sbjct: 339 ALVLDLTGASDD 350 >UniRef50_Q6BK09 DEHA2F25828p n=5 Tax=Saccharomycetaceae RepID=Q6BK09_DEBHA Length = 704 Score = 333 bits (855), Expect = 9e-90, Method: Composition-based stats. Identities = 102/438 (23%), Positives = 174/438 (39%), Gaps = 45/438 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-------GRVLVL 55 LR YQ EA+ + N R + +VL TG GK++V + L + + LVL Sbjct: 38 LKLRDYQVEAIKSVHNAISRGINRSAVVLATGGGKTVVFSHLISQIKPSTPDRGNKTLVL 97 Query: 56 AHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EF 111 AH +ELV Q + + + S+ V+ SV ++ R L + EF Sbjct: 98 AHKEELVRQAADSIAEINPNLKVDIDMRKLKPSSNADVIVASVPTLIRMSRLSKYDPKEF 157 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHL--RLLGLTATPFRLGKGWIYQFHYHGM 169 +I+DECH + + +IL + P ++G TAT R + Sbjct: 158 KTIILDECHHAP---ANSWSKILQYFEAHTPQSQIYVIGFTATMERSDGKSLA------- 207 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 +F + ++E L M+++ L + V D +++ + N + L++ Sbjct: 208 ------EIFDEIVFERNLLEMVQNKELADVRFSSIDV-DVDLTKVATKKN-DYEINSLSQ 259 Query: 230 ELKKQQRITPHIISQI--MEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 + + + ++ K +IF + H K + G+ E A +TG+T Sbjct: 260 AM-NDSEVNLLVALSYSQLQKEFNFKSTLIFCVDISHCKTLCGVFQREGINAQYVTGETA 318 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER +IE+FK L NV V T G D P++D + + RPT+S L Q++GRGLRL Sbjct: 319 KHERQAIIEDFKKGIIEVLCNVQVFTEGTDIPNIDSLFLARPTKSRPLLVQMIGRGLRLH 378 Query: 346 PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 KT C ++D AG +S + ++ E Sbjct: 379 KSKTHCHVVDIAG---------TRGTGIQSVPTLFSLPPDYLIHGKSYEELVKEKEEYDE 429 Query: 406 HFGRRCQGWFEDDDGHRE 423 R + + + + Sbjct: 430 DMERLKKQEILERERNCR 447 >UniRef50_B5IP85 Type III restriction enzyme, res subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IP85_9CHRO Length = 1060 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 106/450 (23%), Positives = 169/450 (37%), Gaps = 58/450 (12%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLA----RGRVLV- 54 F LRPY Q+E +D H ++V TG GK+++ A R Sbjct: 316 FDLRPYAYQREMLDQLAAERSLHHRWHNLVVAATGTGKTVLAAFDVARLHADFPER--FP 373 Query: 55 ---------LAHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSVARN- 103 +AH KE++ Q A ++ + + + S + VF SVQS+++ Sbjct: 374 SPDPPPLLLIAHRKEILQQALATFRQVLRDPSFGELWVDGERPSQWRHVFASVQSLSQQD 433 Query: 104 -LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY 162 + F ++IVDE H + Y + L H+T LLGLTATP R I Sbjct: 434 TAEIPADRFDVVIVDEFHHAA---AASYLRWLDHITPKL----LLGLTATPERADGLDIL 486 Query: 163 QFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLF 222 + EL L + G L+P + D S L+ + G + Sbjct: 487 HWFG------------GRIAAELRLWSALDQGLLSPFHYFAVADAT-DLSALEWRRGG-Y 532 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AA 278 A+L+ R I+S++ + A R + F +VEHA + A A Sbjct: 533 VPAELSTLYTGDHRRVDLILSELDKKLADPSRMRALGFCVSVEHAHFMAERFRARGLNAE 592 Query: 279 LITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIV 338 + +P R + + + L V + G D P +D + +LRPTES ++ Q + Sbjct: 593 ALDASSPADVRRDALRRLQNGELQILFAVDLFNEGLDIPAIDTVLLLRPTESAVVFLQQL 652 Query: 339 GRGLRLAP--GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQV---------FCPAC 387 GRGLRL+P GK+ +LD+ G H + ++ + P C Sbjct: 653 GRGLRLSPETGKSCLTVLDFIGQQHRRFRFDLRYRALLGGSRRQLETQLEQGFPFLPPGC 712 Query: 388 GFANTFWGKTTADGTLIEHFGRRCQGWFED 417 L + R E+ Sbjct: 713 RLVLDRVASQRVLDNLRQSLPSRRPQLIEE 742 >UniRef50_B3ECY7 Type III restriction protein res subunit n=1 Tax=Chlorobium limicola DSM 245 RepID=B3ECY7_CHLL2 Length = 967 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 101/426 (23%), Positives = 175/426 (41%), Gaps = 32/426 (7%) Query: 8 YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA----RGRVLVLAHVKELVA 63 Q+ A+ A ++VL TG GK+ + A A+ G VL L H E++ Sbjct: 145 PQRMALAALEEARNAGNAKGLVVLATGIGKTYLAAFDAKRFCAPTGGNVLFLVHNTEILK 204 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF---QGEFSLLIVDECH 120 Q+ K+ + +A K +V+F S+Q++A++ F +I+DE H Sbjct: 205 QSAEKFANVWPDATSGLYYGTEKTYEVQVLFASMQTMAKDNHQALFDSTHFDYIIIDESH 264 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 R + Y++ILT+ LLG+TATP RL + + F+ + + Sbjct: 265 RTPT---ASYKKILTYFKPKF----LLGITATPDRLDEQEVLPFYDN------------N 305 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 ++E+ R I G+L P + + D++ ++ ++ DL++ L +R Sbjct: 306 LVFEMGQREAIDSGFLVPFKYYGLKD-DIDYTNIRYN-GYRYNVQDLDKLLMIDKRDNG- 362 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 II + E A T K + F +++HA+ A I ER+ + F+ Sbjct: 363 IIEKFNELA-TVKRGIGFCVSIKHAERCAKKFRDAGFSAIAIHSKMGKEEREDAVARFRK 421 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 V G D P V+ + LRPTES +++ Q +GRGLRL+P K +LD+ G Sbjct: 422 GDIDLAFVRDVFNEGVDFPDVETLLFLRPTESKTIFIQQLGRGLRLSPRKEALAVLDFIG 481 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDD 418 N + + + + + D +IE F + ED Sbjct: 482 NYKKAGKVREYLEGLNARDEKTLDKDGKPEYHYPYGCEVKFDEEVIELFKEQEGVTKEDL 541 Query: 419 DGHREQ 424 + + Sbjct: 542 LTNYIK 547 >UniRef50_C6CS24 Type III restriction protein res subunit n=5 Tax=Bacilli RepID=C6CS24_PAESJ Length = 1053 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 154/380 (40%), Gaps = 36/380 (9%) Query: 1 MIFTLRPYQQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELARLA------RGRVL 53 YQ+E ++ + ++V TG GK+++ A R R R+L Sbjct: 322 FSIQPYDYQKEILEKLEAERTLYGRHKNLLVAATGVGKTVISAFDYRRFAQRNPQRARLL 381 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVAR-NLDAF--QG 109 +AH +E++ Q+ ++ + + + + ++ + +F S+QS+ L Sbjct: 382 FVAHREEILKQSLDTFRFILKDLNFGELHVGGNQAKSLEHLFISIQSLNSMKLTEITTPD 441 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 + +IVDE H YQ++L H LLGLTATP R+ + ++ Sbjct: 442 YYDFIIVDEFHHAA---APSYQKLLAHYEPQI----LLGLTATPERMDGKDVLRYFD--- 491 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 E+ L I L P + + D S+++ G + +++L Sbjct: 492 ---------DTIAAEIRLTDAIDRKLLCPFQYFGVSD-HVDLSQVKWTRRG-YDQSELEN 540 Query: 230 ELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDAALI--TGDTP 285 + I++ + ++ + F VEHA + + I G + Sbjct: 541 LFTNNKIRATQILNSLRKYVTDLDEVKGLGFCVGVEHALYMAKVFNEAGIPSISLHGGSS 600 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 +RD + + + V + G D P V+ + LRPTES++++ Q +GRGLRLA Sbjct: 601 DEDRDQVKGRLARGEIKMVFVVDLYNEGVDIPEVNTVLFLRPTESLTVFLQQLGRGLRLA 660 Query: 346 PGKTDCLILDYAGNPHDLYA 365 GK +LD+ G H Y Sbjct: 661 EGKECLTVLDFIGQAHKDYN 680 >UniRef50_D1WDT8 51.5 kDa protein n=5 Tax=Lactobacillus RepID=D1WDT8_9LACO Length = 465 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 120/534 (22%), Positives = 206/534 (38%), Gaps = 94/534 (17%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAHV 58 +F LR YQ + ++ + + ++ P GK++++AE+AR R+L L H Sbjct: 6 VFKLRDYQLKTINKIYDSIKSGHKKIIVQQPPRTGKTVIMAEIARRTTLKGNRLLFLIHR 65 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KE++ Q ++ ++ ++ G VQ++ R ++ E L+++DE Sbjct: 66 KEVLEQAINTFKQQEVDMELATMG-------------MVQTLYRKVNRL-PEPQLILIDE 111 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H YQ IL P+ +L TATP R GK + Q + Sbjct: 112 AHHAA---AKTYQTILNAF----PNAFVLLFTATPIRTGKKQLDQ-------------VA 151 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 D I ++ +I GYL + D +L+ S G F+ A + + + I Sbjct: 152 DDIIVGESIKNLISQGYLANFKYFARKD--VDTKKLKKSSTGDFTNASMEEAVSTK--IY 207 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIENF 296 H++ + A K ++F +VE AK I + + G+T A R+ ++ +F Sbjct: 208 GHVLDNYLRIA-KGKQAVVFTYSVESAKRIAKQFNSAGITAEELDGNTDTATRESIVNDF 266 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + ++ LVNV + T G D P VD + + RPT S++LY Q R L GKT +I+D+ Sbjct: 267 RNKKITILVNVNLFTEGVDLPDVDCVIMTRPTASLALYLQFSMRCLNPRKGKT-AIIIDH 325 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN P T I ++ + + Sbjct: 326 VGNYERFGLP----------------------------NSERDWRTAIVTKDKKTKKKQQ 357 Query: 417 DDDGHREQCDFRFRFKN--------CPQCNAENDIAARRCRECD-----TVLVDPDDMLK 463 +D QCDF FR CP C N I R+ E V+ D ++++ Sbjct: 358 NDSLSIVQCDFCFRVFERSDVKNGTCPGCG--NPIKVRKAPEVTNDQLQEVIQDRKNLVE 415 Query: 464 AALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRT 517 + L + +S H + E + + Y Q ++ Sbjct: 416 KIISDNTKLAIAGKKLSELHTYKELKAYADLHGYRPG------WIFYQLKNRKR 463 >UniRef50_D0DSQ0 Phage DEAD box family helicase n=2 Tax=Lactobacillus fermentum RepID=D0DSQ0_LACFE Length = 975 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 166/393 (42%), Gaps = 38/393 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q A++ K ++V TG GK+ + A R A+ R+L LAH ++++ ++ Sbjct: 221 QTAALNEIEALRLAGKDRGLVVSATGTGKTYLGAFDVRAAKPKRMLFLAHREQILQKSCQ 280 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRI 122 ++ + G + ++ + K +F SVQ+++R +L F +F +++DE H Sbjct: 281 SFKNILGGDPDNFGLYTGGARDKNAKYLFASVQTLSREEHLHRFSPDDFDYILIDEVHHA 340 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ+I+ + T LG+TATP R I+ ++ + Sbjct: 341 GAE---SYQRIMDYFTPKF----FLGMTATPERSDDFNIFNLFHY------------NVA 381 Query: 183 YELPLRYMIKHGYLTPPERLDMPVV------QYDFSRLQAQSNGL---FSEADLNRELKK 233 YE+ L+ ++ L P + + + + + + + G + EL Sbjct: 382 YEIRLQQALELNMLAPFHYVGLTDYAFADQYEEEVDQYRNRKQGSKPSRKQEQRAVELLT 441 Query: 234 QQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 + +I+ Q + + ++F ++V A+ + A A ++G G R Sbjct: 442 SKERVNYILEQTDYYGYSGPVLHGLVFCSSVAEAEALARAFTAAGHPAKALSGADNGDRR 501 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 ++ + Y++ V + G D P V+ + LR T+S +Y Q +GRGLR PGK Sbjct: 502 RQVVHELENGLIEYIITVDIFNEGIDIPCVNQVVFLRNTQSAIVYVQQLGRGLRKYPGKE 561 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 +LD+ GN + Y + S + Sbjct: 562 YVEVLDFIGNYKNNYMIPIALTGDNSYSKDQAR 594 >UniRef50_C5D556 Type III restriction protein res subunit n=2 Tax=Bacillaceae RepID=C5D556_GEOSW Length = 1053 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 162/375 (43%), Gaps = 32/375 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q++A+ + + VI+ TG GK+ + ++ ++L +AH +EL+ Sbjct: 310 QEKALRNLQHTRKNGNNKGVIIAATGTGKTYLSAFDVKAFNPKKLLFIAHREELLDNAIK 369 Query: 68 KYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRIG 123 +Q + + +I KE +F +VQS+ ++ L F + EF +I+DE H Sbjct: 370 TFQQVIPKKEIFGKITGTVKEFDKPYLFSTVQSLHKDEILKRFKRDEFDYIIIDEFHHA- 428 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 E Y++++ + LLGLTATP R+ + H + +Y Sbjct: 429 --EAPTYRKVIDYFQPKF----LLGLTATPERMDGRDVLALCDH------------NIVY 470 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ LR ++ L + D+S++ + NG F E L + LK +R T II Sbjct: 471 EIRLREALEANLLASFHYFGVSDHTVDYSKIPLK-NGFFDEDALVKALKTNER-TDFIIE 528 Query: 244 QIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK-- 297 I + R + F +EHAK + +TG+ R+ +I+ + Sbjct: 529 MIKTYGYHGDRMIGLGFCTNIEHAKYMSEEFNKRGYHTTYLTGEHSIDYREKVIKQLEDE 588 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + V + G D P ++LI LRPTES +++ Q +GRGLR GK ILD+ Sbjct: 589 NHPLELIFTVNIFNEGIDIPKLNLILFLRPTESSTVFIQQLGRGLRKVEGKEFVTILDFI 648 Query: 358 GNPHDLYAPEVGTPK 372 GN + + Sbjct: 649 GNYQKSFVVPLALSG 663 >UniRef50_Q4P241 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P241_USTMA Length = 775 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 166/395 (42%), Gaps = 52/395 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-------GRVLV 54 F+LRPYQ+E + L+ T + PTG+GK+ + L RV + Sbjct: 87 AFSLRPYQEECIQDCLSALDCGVTRIGVSSPTGSGKTTIFTHLIDRLPPRSDTGGQRVAI 146 Query: 55 LAHVKELVAQNHAKYQALGLEAD--IFAAGLKRKESHGKVVFGSVQSVAR---NLDAFQG 109 + + EL Q ++ E I R V + Q++ R LD F Sbjct: 147 IVNSIELALQAANAVTSMFPEKSVEIEQGSKYRASGMADVTVATYQTLNRSQQRLDKFDP 206 Query: 110 E-FSLLIVDECHRIGDDEESQYQQILTHLTKV---------------NPHLRLLGLTATP 153 + F ++VDE H Y ++L+H + + ++G +AT Sbjct: 207 DEFKAVVVDEAHHAA---APSYLKVLSHFDPLIGLGLEQRQGQCSVPTASVPVIGFSATF 263 Query: 154 FRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSR 213 R + +F ++ MI +L P + D + Sbjct: 264 SRHDGLAL-------------GKVFDRIVFHKDFLEMIGEKWLCPIRFTSIK-ADIDLAS 309 Query: 214 LQAQS-NGLFSEADLNRELKKQQRITPHIISQIMEFAAT-RKGVMIFAATVEHAKEIVGL 271 ++ + N F+ + L + + + I+ ++ A R+ +IFA +EH +E+ Sbjct: 310 VKISNLNSDFATSSLA-AVVNTEVVNKIILKAWIDRAHKHRRSTLIFAVNIEHVQELTNT 368 Query: 272 LPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTE 329 + A + G TP ER L+E+F+ + LVN A+LT G D P +D + + RPT Sbjct: 369 FRSAGIDARYLHGGTPMPERRQLLEDFRNGVYPVLVNCAILTEGADVPAIDCVLLARPTR 428 Query: 330 SVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHD 362 S +L+ Q++GRGLRL+P GK DCL+LD GN Sbjct: 429 SRNLFSQMIGRGLRLSPKTGKKDCLVLDIVGNIEK 463 >UniRef50_Q1WS72 DNA/RNA helicase, DEAD/DEAH box family n=14 Tax=Lactobacillus RepID=Q1WS72_LACS1 Length = 951 Score = 331 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 157/384 (40%), Gaps = 38/384 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q A+ K+ A++V TG GK+ + + R L + H +++ + Sbjct: 216 QMAALKELEKIVAEKKSKALVVSATGTGKTYLGAFAVKEYQPKRFLFVVHREQIAKKAME 275 Query: 68 KYQALGLEAD--IFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQ-GEFSLLIVDECHRI 122 ++ + + R+++ K +F ++Q+V+ + LD F +++DE HR Sbjct: 276 SFKKVIGGSGRLYGMLSGDRQDTQAKYIFSTIQTVSQDKILDQLPSNYFDYILIDEAHR- 334 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 YQ+I+ + LG+TATP R+ +Y + + Sbjct: 335 --SAAPSYQKIMHYFKPDF----WLGMTATPERMDNQDVYALFDY------------NLA 376 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ LR +++ L+P + + + D + +N + + +I+ Sbjct: 377 YEIRLRDALENKMLSPFHYIGVQDYEEDGITVDETTNLRY---------LTAPKRVKYIL 427 Query: 243 SQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 Q+ + + V ++F + + A E+ A +T R ++ + Sbjct: 428 DQLDYYGYSGLKVHGLVFCSRQDEALELAQAFTDAGHQAKALTNQDSNERRRAVVRELEE 487 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + Y++ V + G D P V+ + +LR T+S ++ Q +GRGLR PGK +LD+ G Sbjct: 488 GKIEYIITVNLFNEGIDIPCVNQVVMLRNTQSSIVFIQQLGRGLRKYPGKDFVTVLDFIG 547 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQV 382 N + Y + + S ++ Sbjct: 548 NYKNNYLIPIALTQDNSRSIDEAK 571 >UniRef50_Q1WTK7 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Lactobacillales RepID=Q1WTK7_LACS1 Length = 986 Score = 331 bits (848), Expect = 6e-89, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 166/379 (43%), Gaps = 39/379 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q+EA+ +T +I+ TG GK+ + A + R L +AH ++++ ++ Sbjct: 224 QKEALKNLQKLRLLRETKGLIISATGTGKTYLAALDVKNYNPKRFLFVAHREQILKKSLD 283 Query: 68 KYQALGL---EADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHR 121 + + + + K + K +F +VQ++++ NL+ F + EF +++DE H Sbjct: 284 SFHKVLGGDKKTNYGILSGNAKNTDAKYLFATVQTLSKAENLNQFKRDEFDYILIDEAHH 343 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G Y ++L + T LLG+TATP R IY+ + + Sbjct: 344 VGSKI---YGKLLDYFTPDF----LLGMTATPERSDDKNIYELFDYNVP----------- 385 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 YE+ L+ ++ L P + + Y+ + +N + + ++ Sbjct: 386 -YEIRLQEALEEEMLVPFHYIGVSDYTYNGEVIDDNTNLKY---------LVSEERVKYV 435 Query: 242 ISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 + Q + ++F + E A EI LL + +++G+ +R+ IE K Sbjct: 436 VEQSKYYGYDGDVLHGLVFVSRKEEADEIAKLLTKNGYPSQMLSGEDSQEQREQAIEKLK 495 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 YLV V + G D P ++ + ++R TESV ++ Q +GRGLR A GK ++D+ Sbjct: 496 NGELTYLVTVDIFNEGIDIPFINQVIMMRKTESVIVFVQQLGRGLRKAQGKEYLTVIDFI 555 Query: 358 GNPHDLYAPEVGTPKGKSD 376 GN + Y V +S Sbjct: 556 GNYKNNYLIPVALTGDQSR 574 >UniRef50_C0VZ55 ATP-dependent helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ55_9ACTO Length = 1087 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 94/444 (21%), Positives = 166/444 (37%), Gaps = 48/444 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR----------VL 53 T +Q+ + ++V TG GK+++ A + R R L Sbjct: 326 TPFEHQKIMLSELEAERENGHHRNLLVAATGTGKTVIAALDYKRLRERFMKNTGRSPRTL 385 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKE----------SHGKVVFGSVQSV-AR 102 +AH +E++ Q + + +++ + HG +VF S+QS+ ++ Sbjct: 386 FVAHRQEILKQARKTFIDVVKVSNLGISTTDNFALNSLDSRLLAEHGNLVFASIQSLHSK 445 Query: 103 NLDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWI 161 L+ F +F L+I+DE H Y++++ H LLGLTATP R + Sbjct: 446 TLEGFPNDFFDLIIIDEFHHAS---APTYKKLIEHFAPQE----LLGLTATPERGDGTNV 498 Query: 162 YQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL 221 + EL L + L P + D S+++ S G Sbjct: 499 AVEFFS-----------GRIASELRLWDALNADLLVPFHYF-VNSDDTDLSKVRL-SKGE 545 Query: 222 FSEADLNRELKKQQRITPHIISQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED--A 277 + LN + I+ I + + + F A+VEHA + + A Sbjct: 546 YDVKSLNDLYVGNEHRADIIMRAIRDKVPSPDTMRAICFCASVEHANYMADCFNRVNLPA 605 Query: 278 ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 A +T T RD I + R + V + G D P VD + +LRPT+S +++ Q Sbjct: 606 AAVTAKT--ENRDTHITALREGTLRVICAVDIFNEGVDIPEVDTLLMLRPTQSSTIFLQQ 663 Query: 338 VGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKT 397 +GRGLR + GK +LD+ GN + + + ++ + GF + G Sbjct: 664 LGRGLRRSFGKDLLTVLDFVGNQNKDFKFDAKFKVLSGNSRGRLIKSIEEGFTSLPPGVY 723 Query: 398 TADGTLIEHFGRRCQGWFEDDDGH 421 + + + Sbjct: 724 VEFDKVSQDIVLKSLKRTLKPTMK 747 >UniRef50_C0QBM3 RecQ1 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBM3_DESAH Length = 1040 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 156/384 (40%), Gaps = 36/384 (9%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLA-----RGRVLV 54 YQQE +D H ++V TG GK+++ A + + + R+L Sbjct: 308 FNIVPYVYQQEILDTLKAERALHHRWRNLVVAATGTGKTIIAAFDFKQSFERPGQKRMLF 367 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSV-ARNLDAF--QGE 110 +AH +E++ Q+ ++ + + + + + +F SVQ++ AR L Sbjct: 368 VAHREEILVQSRGVFRNILRDHNFGELWVGNHRPDHLEKLFVSVQTLNARALWDQVPPDF 427 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F ++VDE H YQ++L + T LLGLTATP R I + + Sbjct: 428 FDYIVVDEFHHGA---APSYQRLLDYFTPKI----LLGLTATPERADGKDILAWFH---- 476 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 E+ L I L+P + + D+S ++ Q G + L + Sbjct: 477 --------GRICSEIRLPDAINQKLLSPFQYFGISDC-VDYSHVKWQRGG-YDRNGLEKL 526 Query: 231 -LKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 + II + E + F + HA + A A +T +T Sbjct: 527 LITGDDIRARLIIEKAKEILLDVSAARGICFCVSQAHAGYMAEKFQAAGISAMALTAETA 586 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 R ++ + + +L V + G D P +D + LRPTES++++ Q +GRGLRL Sbjct: 587 RDVRRAAVKRLQQRDVNFLCVVDLFNEGVDIPEIDTVLFLRPTESLTVFLQQLGRGLRLC 646 Query: 346 PGKTDCLILDYAGNPHDLYAPEVG 369 GK +LD+ G H + E+ Sbjct: 647 EGKEHLTVLDFIGQAHQKFNFEIR 670 >UniRef50_B9ZK35 Type III restriction protein res subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZK35_9GAMM Length = 1066 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 162/374 (43%), Gaps = 38/374 (10%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA--------RGR 51 F LRPY QQE ++ R +++ TG GK+++ A R R Sbjct: 331 FFDLRPYAFQQEILEDIRRERRSGIDRHLVIAATGTGKTMIAAFDYRRFAREQADKGRPS 390 Query: 52 VLVLAHVKELVAQNHAKYQALGLEADIF-AAGLKRKESHGKVVFGSVQSV-ARNLDAFQG 109 +L +AH +E++ Q A ++ + + + + S + +F +V S AR+LD Sbjct: 391 LLFIAHREEILRQAMASFRQVLQDHEFGDVLVGGARPSQDRHLFCTVASWNARDLDRLDP 450 Query: 110 -EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 F +++DE H YQ+IL H+ LLGLTATP R I Q Sbjct: 451 EHFDYVVLDEAHH---SSAGSYQRILEHVRPK----CLLGLTATPERTDADDIRQHFG-- 501 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEADL 227 + +E+ L I+ L P + + D SR+ + G + +L Sbjct: 502 ----------QRYTHEIRLPDAIERRLLVPFHYFGVADHESVDLSRVSWRRGG-YDAEEL 550 Query: 228 NRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAEDAA--LITGD 283 + ++ Q E A V + F + HA+ + A+ ++TGD Sbjct: 551 EGVFTGNRARADWVLQQAHEHATDLGSVRGLGFCISRAHARFMAEYFSAKQVPSAVLTGD 610 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 + ER + + + R R++ V + G D P VD + +LRPTES+++Y Q +GRGLR Sbjct: 611 SSDHERKSIQRDLREGRIRFIFTVDLYNEGVDLPEVDTVLLLRPTESLTVYLQQMGRGLR 670 Query: 344 LAPGKTDCLILDYA 357 L GK +LD+ Sbjct: 671 LHEGKPHLTVLDFV 684 >UniRef50_A3CSN2 Type III restriction enzyme, res subunit n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CSN2_METMJ Length = 1062 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 91/379 (24%), Positives = 162/379 (42%), Gaps = 36/379 (9%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARGR------VL 53 YQ+E ++ H +IV TG GK+++ A + R +L Sbjct: 329 FDIRPYYYQKEILERLKAERELHNNYKNLIVAATGTGKTVISAFDYKSLFQRPGEYPRLL 388 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSV-ARNLDAF--QG 109 +AH +E++ Q+ ++ + + + + + + +F S+QS+ +RNL Sbjct: 389 FVAHREEILKQSIQVFRGVLKDQNFGDLLVGGSEPAQIEHLFTSIQSLNSRNLPEITPPD 448 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 + ++IVDE H YQ++L++ T LLGLTATP R I ++ Sbjct: 449 YYDMVIVDEFHHAA---APSYQRLLSYYTP----GVLLGLTATPERTDNLDILEYFN--- 498 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 E+ L I L P + V D + + G + A+++R Sbjct: 499 ---------EKISAEIRLPEAINRKLLAPFHYFGVTDV-VDLDTVPWK-RGTYDPAEISR 547 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAED--AALITGDTP 285 Q+ II + ++ ++ F +VEHA+ + A AA + + Sbjct: 548 LYTGNQQRADLIIRAVQDYTTDLHEIIGLGFCVSVEHAEYMAAAFRAAGVPAACLHAGSS 607 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER + + ++ ++ V + G D P V+ I LRPTES++++ Q GRGLRL+ Sbjct: 608 REERSTIQKRLVDRKIHFIFVVDLYNEGVDIPEVNTILFLRPTESLTVFIQQFGRGLRLS 667 Query: 346 PGKTDCLILDYAGNPHDLY 364 GK +LD+ GN + + Sbjct: 668 DGKECLTVLDFVGNHNKNF 686 >UniRef50_D1AKE3 Type III restriction protein res subunit n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AKE3_SEBTE Length = 993 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 86/403 (21%), Positives = 162/403 (40%), Gaps = 29/403 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-RLARGRVLVLAHVKELVAQNHA 67 Q E ++ +IV TG GK+ + A ++ L +AH +EL+ Sbjct: 272 QSELLEKLKLTREFGNKKGLIVAATGTGKTYLAAMDILKMNPKSFLFIAHREELINNAFN 331 Query: 68 KYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECHRIGD 124 + + + + K + + +F ++QS+ +N + F + F +I+DE H Sbjct: 332 VFSKILPYDKNEYGFLTGSEKNYNKRFMFSTIQSLYKNTEYFSKDAFDYIIIDEFHH--- 388 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + S Y+ ++ + +LGLTATP R+ I + + ++ E Sbjct: 389 SKASTYEAVINYFNPFF----MLGLTATPERMDGKDILELCDYNLIG------------E 432 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + LR +++ L+P + D+ ++ SNG + + L +L +R+ I ++ Sbjct: 433 MGLREALEYDLLSPFHYFGVIDDTVDYEQIPF-SNGKYDDKILGEKLSIPKRV-DFIHNK 490 Query: 245 IMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQR 300 I + R + F A ++HA+ + + IT +R +I F+ Sbjct: 491 IEKIGFDGDRVKSIAFCANIKHAEFMKEQFRLKGYTTESITAKDSQLKRKEVINAFQTGE 550 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 L V + G D P V+L+ LRPT S +++ Q +GRGLR K ILD+ GN Sbjct: 551 IEILCVVDIFNEGIDIPDVNLLLFLRPTMSSTIFIQQLGRGLRKVKNKDFVTILDFIGNH 610 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTL 403 Y + + + F++ + Sbjct: 611 KKDYIITQAFSENTLNEKDRLLNEVRNQFSDIPGASYIELDRI 653 >UniRef50_C7N5J4 DNA/RNA helicase, superfamily II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5J4_SLAHD Length = 974 Score = 328 bits (842), Expect = 3e-88, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 163/389 (41%), Gaps = 43/389 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+ K A+++ TG GK+ + ++ + +VL + H ++ ++ Sbjct: 225 QTEALAGLAQLRDEGKNRALLISATGTGKTYLSAFDVKAFSPKKVLYVVHRNKIARKSME 284 Query: 68 KYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARN--LDAF-QGEFSLLIVDECHRI 122 +Q + E K + + +F +VQ++A+ L+ F + EF +IVDE HR Sbjct: 285 SFQNVLSSKEYSFGMFSGSEKTTDARCIFATVQTLAKRENLEKFAKDEFDYIIVDEVHRA 344 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + Y + + + +LG++ATP R IY+ H + Sbjct: 345 G---ANSYLRFMDYFEAEF----ILGMSATPERTDDFDIYELFDH------------NIA 385 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L +++ L P + V D L+ A NR + H++ Sbjct: 386 YEIRLNDALEYNLLVPFHYFGVAEVCIDGELLEED-------ASFNRLV--SDERVRHVL 436 Query: 243 SQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 + I ++ R ++F + +E A+E+ ++G T A RD IE + Sbjct: 437 NAINKYGYSGERVHGLVFCSRIEEAEELSQKFNNLGYKTVALSGSTSEALRDDAIERLEQ 496 Query: 299 QR-----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR + GK ++ Sbjct: 497 DEDDENALDYIFTVDIFNEGIDIPAVNQVVMLRPTQSAIVFVQQLGRGLRTSEGKEYVVV 556 Query: 354 LDYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 +D+ GN Y + +S + Sbjct: 557 IDFIGNYQKNYLIPIALFGERSGSKEKLR 585 >UniRef50_Q6CMW9 KLLA0E17095p n=2 Tax=cellular organisms RepID=Q6CMW9_KLULA Length = 690 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 162/369 (43%), Gaps = 35/369 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-------GRVLVLAH 57 LR YQQ+ ++ ++ + K + L TG GK+++ + L R L+L H Sbjct: 53 LRDYQQDCINKCVDAVTQGKMRIGVSLATGGGKTVIFSNLLDRFRSLGAHSSRAALILVH 112 Query: 58 VKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLL 114 +EL Q + + ++ L VV GSV ++ R L+ + + L+ Sbjct: 113 RRELAMQAASTISKFMPDLNVQMEMGKLHANLEEADVVIGSVLTMVRRLEEYPPDSIDLI 172 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIYQFHYHGMVRG 172 ++DE H D Y ++L H P R+ +G +AT R K + Sbjct: 173 VIDEAHHAVAD---SYVKVLAHFNADTPATRVPVIGFSATFERADKRALS---------- 219 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 A+ + IY + MI +L + + V D S+++ N F L++ + Sbjct: 220 ---AVMDEIIYHKGILEMIDENWLCEGKFTTVDV-GVDLSKVK-SVNSDFQLEGLSK-VM 273 Query: 233 KQQRITPHIISQIM--EFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 + I +++ + + K ++FA V H K + A +TG T E Sbjct: 274 NTKEINEIVLNTYLHKKKLHNLKSTLLFAVDVAHCKTLFQTFQNAGINAQYVTGKTRTGE 333 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 RD ++ +FK + + L+N + T G D P+VD + + RPT+S SL Q++GRGLR K Sbjct: 334 RDSIVSDFKNGKIQVLMNCGIFTEGTDIPNVDCVLLCRPTKSRSLLVQMIGRGLRKHHSK 393 Query: 349 TDCLILDYA 357 C I+D+ Sbjct: 394 EHCQIIDFV 402 >UniRef50_B1XZH6 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B1XZH6_LEPCP Length = 1058 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 158/404 (39%), Gaps = 34/404 (8%) Query: 2 IFTLRP--YQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVL 53 F L+P YQQE ++ + + ++V TG GK++V A R R R+L Sbjct: 326 FFDLQPKTYQQEMLEQLITERSHGRNRNLLVAATGTGKTVVAAFDYRNTCRVEGGRPRLL 385 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVARNLDAF---QG 109 +AH +E++ Q Y+ + + + + +F ++ SV Sbjct: 386 FVAHREEILRQALRTYREVLRDPEFGDLLTGGNQPERWDHLFATIDSVTSRDLVTTVGAD 445 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 + ++VDECHR+ D K LLGLTATP R I Q+ Sbjct: 446 HWHTVVVDECHRLAADR-------FDAFVKSVRPSVLLGLTATPERSDGQPIAQYFDARP 498 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 EL L + + L P E DFS + G +++ Sbjct: 499 D--------GSPAIELRLWHALDLQLLAPFEYYACDD-GTDFSAVPWDKPGE--REAVDK 547 Query: 230 ELKKQQRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 + ++++ A+ ++F +V HA+ + AA + G T Sbjct: 548 LVTGNDVRARLVVNEWRRLASDASTSRAIVFCVSVAHAEFMTDRFNRAGLPAACVVGTTA 607 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER + + LV V + G D P VD + +LRPT+S L+QQ +GRGLRLA Sbjct: 608 IEERRRAPQRLLSGELCALVTVDLYNEGIDLPMVDTLLLLRPTQSPVLFQQQIGRGLRLA 667 Query: 346 PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGF 389 PGK CL+LD+ G + + + V GF Sbjct: 668 PGKESCLVLDFVGQHRTEFRFDRLLSSLTGLSRRELVDGVENGF 711 >UniRef50_B0TQK0 Type III restriction protein res subunit n=22 Tax=Bacteria RepID=B0TQK0_SHEHH Length = 1072 Score = 327 bits (839), Expect = 7e-88, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 154/379 (40%), Gaps = 36/379 (9%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAEL-----ARLARGRVLV 54 +Q+ +D H ++V TG GK+++ A A + L Sbjct: 323 FDIKPHSHQRAILDKLKVERELHSRYRNLVVAATGTGKTIISAFDFAEFYAANPEAKFLF 382 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVARNLDAF---QGE 110 LAH +E++ Q + Y+ + + + + +F S+QS+ L + Sbjct: 383 LAHREEILKQARSAYRGVLKSNQFGELLVGQNKPQKFNQLFASIQSLNNQLATIQLTEDY 442 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F +++DE H I S Y+ +L H L+GLTATP R I + + Sbjct: 443 FDYIVIDEVHHIA---ASSYRPVLQHFKPQI----LVGLTATPERHDGADILKDFCNV-- 493 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 E+ L I +L+P + + D +++ + G + A+L + Sbjct: 494 ----------IAAEIRLPEAINQRHLSPFQYFAVDD-DTDLTKISW-AKGRYDIAELTKL 541 Query: 231 LKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPG 286 + I+ + E + F + +HA I ++ ++T D Sbjct: 542 YTYNDQRVLRILQSLEEIVTDISQMRALAFCVSKDHANFIAQKFNLKNIPCGVLTSDNS- 600 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 ER++L + K++ L V + G D P +D + LRPTES++++ Q +GRGLRL Sbjct: 601 KEREILQQRLKSKEINVLFVVDIFNEGVDIPELDTLLFLRPTESLTVFLQQLGRGLRLTK 660 Query: 347 GKTDCLILDYAGNPHDLYA 365 K C ++D+ GN Y Sbjct: 661 DKECCTVIDFVGNSRPEYD 679 >UniRef50_Q1MTR1 Putative mitochondrial ATP-dependent helicase irc3 n=2 Tax=Schizosaccharomyces RepID=IRC3_SCHPO Length = 606 Score = 327 bits (839), Expect = 7e-88, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 167/375 (44%), Gaps = 33/375 (8%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR------GRVLV 54 LRPYQ+E + A LN F K + L TG+GK+ + + A + L+ Sbjct: 23 FALKLRPYQEECLSACLNAFDEGKRRIAVSLATGSGKTALFPHFIKYAPTLRPNSEQCLI 82 Query: 55 LAHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEF 111 L H KEL Q + I G + V SV S+ R L F Sbjct: 83 LVHRKELALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLLKYNPLNF 142 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIYQFHYHGM 169 LLI DE H + Y +IL H + ++ +GLTAT FR + Sbjct: 143 KLLIFDEVHHMAS---PSYLRILEHFGAESEKSKVNVIGLTATLFRADGKGLACGL---- 195 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 + +Y MIK +L P+ +++ + + A S+ + L + Sbjct: 196 ---------DEIVYHRHFVDMIKDNWLVEPKVINIK---WSTDLVLADSSSFLDQEKLKK 243 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 E + ++ I I +E A+ R ++F VEH+ ++ A + G+T + Sbjct: 244 EAQSEKAIFE-IPRAWLEHASNRSSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDS 302 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ER+ LI++F+ ++F LVN VLT G D P++D + I RPT S +L Q++GRGLRL G Sbjct: 303 ERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLMIARPTSSPNLLTQMIGRGLRLHEG 362 Query: 348 KTDCLILDYAGNPHD 362 K DCLILD+ + Sbjct: 363 KRDCLILDFCDSLRR 377 >UniRef50_B1M5E1 Helicase domain protein n=8 Tax=Alphaproteobacteria RepID=B1M5E1_METRJ Length = 569 Score = 327 bits (838), Expect = 9e-88, Method: Composition-based stats. Identities = 143/406 (35%), Positives = 205/406 (50%), Gaps = 32/406 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTP-----AVIVLPTGAGKSLVIAELARL-----ARGR 51 + LR YQ+ ++DA + R +IVLPTGAGK+LVIA LAR R Sbjct: 1 MLRLRDYQRASLDALSAAWARGGADDAAPGHLIVLPTGAGKALVIAALARETLDENPLAR 60 Query: 52 VLVLAHVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 V ++ H +ELVAQN ++ A IF+AGL+R+E+ +V+ +QSVA LDA Sbjct: 61 VAIVTHSRELVAQNFSELTRSWPGAPAGIFSAGLRRREAGAQVLVCGIQSVADRLDAIGP 120 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L+IVDE H I +++Y + L L P LR+ G TATP+RL G + + + Sbjct: 121 R-DLVIVDEAHLIPRAADTRYGRFLAGLRARTPGLRVAGFTATPYRLDSGRLDEGEH--- 176 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 LF YE +I+ G+L P + Q D S + + G + +L Sbjct: 177 ------RLFSGIAYEADTFTLIRRGFLAPL-VSKATLTQLDVSGVG-RRGGDYIPGELEA 228 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 + + IT ++++ E+ R+ + F A + HA+ + + AE ++G+TP Sbjct: 229 AVNRDW-ITRAAVAELAEYGRARRAWLAFCAGLAHAEAVRDAVRAEGYSCESVSGETPRR 287 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 ERD ++ F+A + R L +V VL TGF+ P VDL+A+LRPT S LY Q VGR LR APG Sbjct: 288 ERDRIVAAFRAGQIRCLTSVGVLGTGFNVPEVDLVALLRPTRSTGLYVQQVGRALRCAPG 347 Query: 348 KTDCLILDYAGNPHDLYAPEV-----GTPKGKSDNVPVQVFCPACG 388 K D LILDYAG + T CP CG Sbjct: 348 KADALILDYAGLVRMHGPVDAVTVRSATQGLGGAGASRAKPCPGCG 393 >UniRef50_Q06683 Putative ATP-dependent helicase IRC3 n=6 Tax=Saccharomyces cerevisiae RepID=IRC3_YEAST Length = 689 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 158/373 (42%), Gaps = 38/373 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG----------RVLV 54 LR YQQ+A+DA +N R+ + L TG GK+++ + L R + L+ Sbjct: 33 LRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKSLI 92 Query: 55 LAHVKELVAQNHAKYQALGLE--ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEF 111 L H +EL Q A + + + I V+ SVQ++ R L + Sbjct: 93 LVHRRELALQATATLKKIFPDLKVHIEMGKYDCDIEDSDVIVASVQTLIRRLHKYDTNSV 152 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTK--VNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 +L+I+DE H + Y+ IL H + ++G +AT R K + Sbjct: 153 NLIIIDEAHH---SVANSYRSILDHFKASTAETKIPVIGFSATFERADKRALSMVM---- 205 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 +Y + MI +L + + + + D S ++ + F A L+ Sbjct: 206 ---------DKIVYHRGILEMIDDKWLCEAKFTSVKI-EADLSDVK-STADDFQLAPLS- 253 Query: 230 ELKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLL--PAEDAALITGDTP 285 L + I I+ + + K ++F H + + L + +T DT Sbjct: 254 SLMNTKEINEVILKTYLHKKQEKSLKSTLLFGVDKAHVQSLHKLFKDNGINTDYVTSDTK 313 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ERD +I+ FK L+N + T G D P++D I + RPT+S SL Q++GRGLRL Sbjct: 314 QIERDNIIQKFKNGETEVLMNCGIFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRGLRLH 373 Query: 346 PGKTDCLILDYAG 358 K C I+D+ G Sbjct: 374 HSKDHCHIIDFIG 386 >UniRef50_B8J8P5 Type III restriction protein res subunit n=2 Tax=Anaeromyxobacter dehalogenans RepID=B8J8P5_ANAD2 Length = 1033 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 150/383 (39%), Gaps = 37/383 (9%) Query: 1 MIFTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARL-----ARGRV 52 F LRPY Q+ ++ H ++V TG GK+++ A R R+ Sbjct: 308 FFFDLRPYEYQRAILEKLRVEREEHGRWKNLVVAATGTGKTMIAAFDYAAQVKDGVRPRL 367 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVARN---LDAFQ 108 L +AH +E++ Q ++ + + + + +F ++QS+ R + Sbjct: 368 LFVAHREEILEQALHAFRNVLRDHSFGELLKGGSTPASYEHLFATIQSLDRKDLPAALGR 427 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 + +IVDE H Y +L + LLGLTATP R + + H Sbjct: 428 DYWHTVIVDEFHHAA---AKTYGLLLEAVAPKI----LLGLTATPERADGLDVLGWFDH- 479 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 ++ L + ++ L P E + ++ + G + L+ Sbjct: 480 -----------HVAADIRLWHALEKQLLAPFEYYGVAD-GVSLEGVEWRRGG-YDLGGLD 526 Query: 229 RELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDT 284 + ++S++ E + F +V HA+ + +I G T Sbjct: 527 KVYTGNDERARLVVSKLRELHGHPETARGLGFCVSVAHAEFMARRFTEAGIPSLVIHGAT 586 Query: 285 PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 ERD + +L + G D P VD + +LRPTES +L+ Q +GRGLRL Sbjct: 587 DADERDEAPRKLERGEVAFLFTCDLYNEGVDLPFVDTLLLLRPTESATLFLQQLGRGLRL 646 Query: 345 APGKTDCLILDYAGNPHDLYAPE 367 PGKT L+LD+ G Y + Sbjct: 647 HPGKTQALVLDFIGQQRAEYRFD 669 >UniRef50_Q047C2 DNA or RNA helicase of superfamily II n=26 Tax=Lactobacillus RepID=Q047C2_LACGA Length = 949 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 38/384 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A+ + A++V TG GK+ + + + L L H +++ + Sbjct: 219 QKAALANLNALVKEQAKKALVVSATGTGKTYLGAFAVKEYKPKKFLYLVHREQIAKKALE 278 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIVDECHRI 122 + + G ++D + + K +FG+VQ+V++ L+ E F +++DE HR+ Sbjct: 279 SFYRVIGGKKSDYGLLTGNKHDFDKKYLFGTVQTVSQEQILEQLDPEEFDYILIDEAHRV 338 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 YQ+IL H LLG+TATP R+ K IY+ + Sbjct: 339 A---APTYQKILNHFAPKF----LLGMTATPERMDKQNIYEIFDY------------HLA 379 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ + LTP + + + S L + ++ +++ Sbjct: 380 YEIRLKDALNDQMLTPFHYVGVEDYTVGNHVISETSK-------LKDLVARK--RVEYVL 430 Query: 243 SQIMEF--AATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 Q+ + + ++F + E A+E+ L + +T + +R + + Sbjct: 431 KQLDYYGYCGEKAKGLVFCSRQEEARELAKLFSQTGHPSRALTNEDSQKQRIEVTHQLEN 490 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y+ V + G D P ++ I +LR T+S ++ Q +GRGLR PGK ++D+ G Sbjct: 491 GELEYIFTVDLFNEGIDIPSLNQIVMLRNTQSSIVFIQQLGRGLRKFPGKDYVTVIDFLG 550 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQV 382 N + Y + KS + V Sbjct: 551 NYKNNYLIPIALNGDKSRDKDQAV 574 >UniRef50_Q8YK43 All8075 protein n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YK43_ANASP Length = 681 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 107/438 (24%), Positives = 181/438 (41%), Gaps = 44/438 (10%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 I+ LR YQ + + N ++R + LPTGAGK++ A + + + +VLV+AH Sbjct: 7 IYELRNYQHQWIKDIWNSWKRGNRRVLAQLPTGAGKTICFAHICQKFFQKQQKVLVIAHR 66 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN-LDAFQGEFSLLIVD 117 EL+ Q K + + E G ++ S+Q++AR + LL+ D Sbjct: 67 IELITQAAEKLEQIVGEPVGIIKGGCAAHPERRIQVASIQTLARRDILELPLNIGLLLFD 126 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H S Y++++ H + +LG+TATP R+ + L Sbjct: 127 EAHH---SSASSYRRLIEHYQEAQ----ILGVTATPQRIDGQ-------------GFQEL 166 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F D + + +IK GYL+ +S G F +L + Q Sbjct: 167 FDDLVVGISTSTLIKEGYLSKFRLFTTNQTISTI--GVKKSRGDFRAKELAVAV-TSQIG 223 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 I +++A + +IFA ++EH++ + A + G+TP R ++E Sbjct: 224 VDEIFQNYLKYAKNLR-TVIFACSLEHSRALAAKFRRNGIKAEHLDGETPPELRVQILER 282 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + + N +LT G+D P+++ I +RPTES +L+ Q+ GR LR K +I+D Sbjct: 283 FRGGETQVITNYEILTEGYDCPNIECIYCVRPTESSTLWLQMTGRVLRTHTLKPTAVIID 342 Query: 356 YAGNPHDLYAPEVGT------PKGKSDNVPVQVFCPACGFA--------NTFWGKTTADG 401 N P+ + + + CP C A G+ DG Sbjct: 343 VTDNWKKHGLPDEQRQWSLEAKTLTASSSLGLIQCPHCTHAFKPLSHELAIVDGEIGEDG 402 Query: 402 TLIEHFGRRCQGWFEDDD 419 LIEH C + + Sbjct: 403 LLIEHHEAICPNCGQAVE 420 >UniRef50_C6R1X3 Helicase n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1X3_9MICC Length = 1075 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 85/427 (19%), Positives = 167/427 (39%), Gaps = 39/427 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVLVLAHV 58 P+Q ++ N + + + V TG GK++ A R + ++L +AH Sbjct: 321 PFPHQVRMLEEMQNARSKGRHRNLAVAATGTGKTVFSALDYRRLCEQSGKKLKLLFIAHR 380 Query: 59 KELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVARNL--DAFQGEFSLLI 115 KE++ Q + + L+ + +K + + VF ++Q+++ + F ++I Sbjct: 381 KEILDQARRTFGDVMLKGNFGELLTGGKKPEYNEAVFATIQTLSGAALENYAPDYFDVII 440 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DECH I + + + ++ + +GLTATP R I ++ Sbjct: 441 MDECHHI---KAASWDKVFNYFEPRE----FIGLTATPEREDGVNIADKYFD-------- 485 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + L ++ L P + + D R+ + G + E L K + Sbjct: 486 ---GYVATSIRLWDALEDHLLVPFQYFGIAD-GTDLRRINVR-GGKYDENALENLYTKDE 540 Query: 236 --RITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAER 289 R I+ ++ E R + F +V+HA+ + A + G R Sbjct: 541 AERRLRIIVEELREKVDNPLRMKALGFCVSVKHAEYMAQKFNEVGIPADFLVGTDSAERR 600 Query: 290 DVLIENF--KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 +++N +A + V + G D P VD + +LRPT+S++L+ Q +GRGLR AP Sbjct: 601 AEVMKNLADEAHELTTIFTVDLFNEGVDIPSVDTLLMLRPTQSLTLFLQQLGRGLRRAPL 660 Query: 348 KTDCLILDYAGNPHDLYAP--EVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 K+ +LD+ G+ + + + + + P F +I+ Sbjct: 661 KSVLTVLDFVGHQNKNFMIHSKYRAFARQGTLTEQDIESPELPAGCHFHLDELTQKQVIK 720 Query: 406 HFGRRCQ 412 + Sbjct: 721 KIRESLR 727 >UniRef50_A1SRA3 Type III restriction enzyme, res subunit n=4 Tax=Bacteria RepID=A1SRA3_PSYIN Length = 860 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 106/588 (18%), Positives = 190/588 (32%), Gaps = 116/588 (19%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA--------------- 48 R YQ+ A++ L K ++ L TG GK+ + + A Sbjct: 161 QPRYYQENAINQALEAIALGKDRILLALATGTGKTCIAFQTAWKLFHSRWSLQAAKNPSN 220 Query: 49 ---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAA-----GLKRKESHGKVVFGSVQSV 100 R R+L LA L Q + A G +A + K + + Q++ Sbjct: 221 AKKRPRILFLADRNILTKQAFNDFGAFGEDAVVRITPSEIKKAKGVPKNASIFMAIFQTL 280 Query: 101 A---------------------------------RNLDAFQGEFSLLIVDECHRIGDDEE 127 + F +I+DECHR G ++E Sbjct: 281 MTDSASNPTNDSDEEELPEDEDYSLPIVTDTSNCNFRQYPEDFFDFIIIDECHRGGANDE 340 Query: 128 SQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPL 187 S ++ IL + LGLTATP R Y++ F + +Y L Sbjct: 341 SSWRDILNYFAPAVQ----LGLTATPKRTDNVDSYKY-------------FGEPVYSYTL 383 Query: 188 RYMIKHGYLTPPERLDMPVVQYDFS---------RLQAQSNGLFSEADLNRELKKQQRIT 238 + I G+LTP + + ++ + + ++ ++ E D NR + QR Sbjct: 384 KEGINDGFLTPFKVYPIVGTMDEYQYTPGDAVTFKGEPEAGRVYKEGDFNRIITMPQR-E 442 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE-----------DAALITGDTPGA 287 + M+ ++F T EHA + + IT + A Sbjct: 443 QKRVHYWMDHINPHDKTIVFCGTQEHAGMVRDYINQYAVQKGWTTNPTYCVRITANDGAA 502 Query: 288 ERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL 344 + + F L L+TG DA +V I ++RP ++ ++QI+GRG RL Sbjct: 503 -GENDLRTFCDNEKTIPTILTTSRKLSTGVDARNVRNIVLMRPCNNMIEFKQIIGRGTRL 561 Query: 345 APGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLI 404 GK+ + D+ H+ PE P + C C + Sbjct: 562 YDGKSFFTVYDFVKAHHNFADPEWDGEPLPPKEKPDEQPCDICNVSPCICICEVCGFN-- 619 Query: 405 EHFGRRCQGWFEDDDGHREQCD---FRFRFKNCPQCN--------AENDIAARRCRECDT 453 C + + +C+ + + C C ++D R + Sbjct: 620 -----PCNCKDDTPNEPCGECNQSPCQCLTEPCNNCGDTPCSCNTDDDDGNTGRPDKIFI 674 Query: 454 VLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDG 501 L D ++ + ++ + ++ L + +ED Sbjct: 675 TLTDGKVRQIQHMKSVLFMGADGEMLTAKQFVEQLFGDLPRFFGNEDE 722 >UniRef50_Q0AY89 DNA or RNA helicases of superfamily II-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AY89_SYNWW Length = 773 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 159/366 (43%), Gaps = 27/366 (7%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 + LRP+Q+E ++ + + A+I G GK+ A L +AH EL Sbjct: 154 VLELRPHQEETLERLQELRGEYHSMALIADAQGTGKTTTAVLDACNMGLCTLFVAHTLEL 213 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFSLLIVDECH 120 + Q +++ L A + V+ S+Q + L F F +I+DE H Sbjct: 214 LQQAANRFKELWPRAQVKIIDNYAGPLDADVMIASIQGLHNRLTQFAPDHFGYIIIDEAH 273 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 + Y+++L++ LLGLTATP R + I +F++ Sbjct: 274 HAA---ATTYRKVLSYFKP----RFLLGLTATPERHDQESIM-------------EIFQN 313 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 + L L+ ++ G L P + + DFS+++ ++ DL+ + +R Sbjct: 314 EAHRLDLKTAVEIGELVPIRCVRVK-TNIDFSQVRIN-GIRYNYRDLDSCVHVPER-NRL 370 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 I+ + + ++F A+++HA E+ L A ++ G +R+ ++EN+ Sbjct: 371 IVETYLSHVP-GEKAVVFCASIQHAMEVAELFRDSGVKAEVVEGRMKKRDREAVLENYHQ 429 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 + + L +L G+D+P ++ + RPT S +Y Q +GRG R APGK L+ D+ Sbjct: 430 DKVKVLCACDILNEGWDSPETAVLFMARPTLSRVIYLQQLGRGTRKAPGKEALLVFDFID 489 Query: 359 NPHDLY 364 N Sbjct: 490 NTARHN 495 >UniRef50_B1YI12 Type III restriction protein res subunit n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YI12_EXIS2 Length = 774 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 172/388 (44%), Gaps = 37/388 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAK 68 Q+EA+ A +T A+ VL TG GK+ + A AR R+L LAH +EL+ Q Sbjct: 199 QEEALRALRETMEEGRTRALTVLATGLGKTYLSAFFARDF-KRILFLAHQRELLEQAERS 257 Query: 69 YQALGLE--ADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGE-FSLLIVDECHRIG 123 ++ + + + + V+FGSVQ+++ R+L+ F + F L+I+DE H Sbjct: 258 FKKVESNWQTAFYIGSDRTNDEQTDVLFGSVQTLSQNRHLERFAQDYFDLIIIDEFHHAA 317 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ++L H LLGLTATP R+ +Y + + + Sbjct: 318 ---AKSYQKVLAHFEP----RFLLGLTATPDRMDGADVYALCDN------------NVAF 358 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 ++ I G+LTP + V D+S+L+ + + +L + + + ++ +I + Sbjct: 359 QMHFTSAINEGFLTPFHYYGIHDV-IDYSQLR-RMGRKYDAMELEQA-QIDRTVSENIYA 415 Query: 244 QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRY 303 + T + F +++ A+ + +I R I+ F+ Sbjct: 416 AWSKHRQT--KTIGFCSSIRQAEYLAQTFREMGHQVIALTGQTINRRERIQEFEQGTVEI 473 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHD- 362 + V + G D P VD + RPTES+++Y Q +GRGLRLA K+ C+I+D GN + Sbjct: 474 VFTVDLFNEGVDIPKVDTLLFCRPTESIAIYTQQIGRGLRLANEKSHCVIIDLIGNYKNV 533 Query: 363 ------LYAPEVGTPKGKSDNVPVQVFC 384 L + +G + + C Sbjct: 534 ETKLMLLGTVKDKLKRGDKEPITPPKGC 561 >UniRef50_B6AMU8 Putative helicase n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6AMU8_9BACT Length = 1055 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 91/378 (24%), Positives = 162/378 (42%), Gaps = 36/378 (9%) Query: 3 FTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARGR-----VLV 54 F +RPY Q+E +D H + ++V TG GK+++ A R R + L Sbjct: 316 FDIRPYPFQEEVLDRLEAEREVHGSFRNLVVSATGTGKTVIAAFDFRRFREQKPDATFLF 375 Query: 55 LAHVKELVAQNHAKYQALGLEADIFAAGL-KRKESHGKVVFGSVQSVARNL--DAFQGEF 111 +AH +E++ Q+ +++ + + + + + HG+ VF S+QS+ R +F Sbjct: 376 VAHRQEILEQSLKQFRHILEDRNFGELWVAGSRPVHGQHVFASIQSLDRAAVGRISPEQF 435 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 +++DE H Y+++L L LLGLTATP R + ++ Sbjct: 436 DYVVIDEIHHG---MAPTYRRLLETLKPRI----LLGLTATPERSDGLDVRRYFN----- 483 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 ++ L I L P + D+ L+ + G + DL L Sbjct: 484 -------DRMAADIRLGEAIDRNLLCPFHYFGVTD-SVDYRNLRWE-RGQYDRRDLEHVL 534 Query: 232 KKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDA--ALITGDTPGA 287 ++ + E+ + F V HA+E+ L A ++ D+ Sbjct: 535 TGNDLRNRSVLRALREYCPDLSEVRGIGFCVGVRHAQEMSDLFNRAGIPSASLSADSSRE 594 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 RD + + ++++ V + G D P VD + LRPTES++++ Q +GRGLR G Sbjct: 595 VRDAVSAKISSGEWKFIFVVDLYNEGIDIPVVDTVLFLRPTESLTIFLQQLGRGLRQRRG 654 Query: 348 KTDCLILDYAGNPHDLYA 365 KT +LD+ G+ H+ + Sbjct: 655 KTHLTVLDFVGHMHEKFD 672 >UniRef50_Q1NXV3 Helicase-like:Peptidase S24, S26A and S26B:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase-like n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NXV3_9DELT Length = 1196 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 97/405 (23%), Positives = 155/405 (38%), Gaps = 31/405 (7%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-RGRVLVLAHVKELVAQNHA 67 Q+EA+ A R ++V+ TG GK+ + A A RVL +AH +E++ Q A Sbjct: 415 QKEALAALAATRREGYRRGLVVMATGLGKTWLAAFDAGHCTARRVLFVAHREEILQQAAA 474 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRIGD 124 + + A +++++ ++F S+Q++AR +L F F ++VDE H Sbjct: 475 TFLRIRPRARAGFYLGRQRDAEVDLLFASIQTLARSEHLARFAADHFDYVVVDEFHHAA- 533 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + Y+++L H LLGLTATP R + I + +Y Sbjct: 534 --AATYRRLLRHFNP----RFLLGLTATPERTDQSDILSLCD------------DNLVYS 575 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L I L P + D+ + + NG F L +L H + Q Sbjct: 576 CNLADGINAQLLAPFHYYGIYDQSVDYREIPWR-NGRFDPDALVNKLAT-LARARHALEQ 633 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAE-RDVLIENFKAQRFRY 303 + R + F +V HA+ + A A R + + R R Sbjct: 634 WRQQGGKR--TLAFCVSVRHAEFMADQFSQAGIAAAAVYAGAAISRGDALARLRDNRLRV 691 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDL 363 + V + G D P +D + +LRPT+S L+ Q +GRGLR GK ++LD+ GN Sbjct: 692 IFAVDLFNEGVDLPEIDTVMMLRPTDSKILFLQQLGRGLRRVEGKEHLVVLDFIGNHRGF 751 Query: 364 YAPEVGTPKGKSDNVPVQVFCPACGFAN---TFWGKTTADGTLIE 405 + F D LIE Sbjct: 752 LHKPQALCGVGPGYRQMAEFARRAQQQRLELPTGCFVNYDLQLIE 796 >UniRef50_A1SY30 Type III restriction enzyme, res subunit n=3 Tax=Bacteria RepID=A1SY30_PSYIN Length = 1149 Score = 324 bits (831), Expect = 6e-87, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 160/387 (41%), Gaps = 41/387 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q EA+D + A+++ TG GK+ + A A+ + R+L + H + ++ Sbjct: 218 QVEALDNINVLRQSGARKALLISATGTGKTYLSAFDAQALKPKRLLFVVHRLTIALKSLE 277 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIG 123 +Q G + ++E +F +VQ++++ +LD F + F +I+DE HR G Sbjct: 278 TFQNVFGTGKTMGVYSGSKQELDKDFLFATVQTISKQNHLDQFNKDYFDYIIIDESHRSG 337 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 + Y++++ H LLG+TATP R I+ H + Y Sbjct: 338 ---ANSYKRLIEHFEPTF----LLGMTATPERTDGEDIFSLFDH------------NIAY 378 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L ++ G L+ + + D + ++ G F +II Sbjct: 379 EIRLNRAMEEGMLSNFHYYGVTDLIID--NVIQENMGDF-------AFLSSHERVDNIIK 429 Query: 244 QIMEFAATRKGV--MIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKAQ 299 + + ++F + E AK++ + ++G+ ER IE + Sbjct: 430 HACFYGSDNGITRGLVFCSRNEEAKKLAEMFNQSGFRSLALSGENSEDERARAIERLETD 489 Query: 300 ----RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 + Y+ V + G D P V+ I ++RPT+S ++ Q +GRGLR GK ++D Sbjct: 490 NLAEKLDYIFTVDIFNEGIDIPKVNQIIMIRPTDSAIVFVQQLGRGLRKVDGKDYLTVID 549 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQV 382 + GN ++ Y + S N Sbjct: 550 FIGNYNNNYLIPIALYGDTSYNKDALR 576 >UniRef50_A5DU02 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DU02_LODEL Length = 760 Score = 324 bits (830), Expect = 6e-87, Method: Composition-based stats. Identities = 106/383 (27%), Positives = 165/383 (43%), Gaps = 42/383 (10%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------------- 48 F LR YQ +A++A + +V+ TG GK+++ + L R Sbjct: 129 AFKLRDYQVQAIEAIKLALDQGIRRPAVVVATGGGKTVIFSNLIRELLDMLRTETTKSQS 188 Query: 49 -RGRVLVLAHVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVA--RNL 104 R+LVLAH +EL+ Q K +A+ E ++ R + VV SV S+ R L Sbjct: 189 QNKRILVLAHTEELIKQAVQKIKAINPELNVRIEMRSARSKDTDDVVVASVMSIKHPRRL 248 Query: 105 DAFQG-EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR--LLGLTATPFRLGKGWI 161 F F+ +I+DECH + YQ+IL H + L ++G TAT R K + Sbjct: 249 ARFDPAHFTSIIIDECHHAP---AATYQKILNHFGALLHDLHLSVIGFTATLSRFDKRSL 305 Query: 162 YQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL 221 +F +++ L MI+ G L P V + ++ + Sbjct: 306 -------------GVIFDKVVFQRSLLTMIEAGELVKPVIHRPLVANLNLESVK-RQGSD 351 Query: 222 FSEADLNRELKKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAED--A 277 + +L + + M K +IF V+H E+ L + A Sbjct: 352 YDTENLYNAMSAVG-FNDKAVLSYMRLVEQTACKSTLIFCVNVQHCWELCSTLQSHGINA 410 Query: 278 ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 +TG+T +ER ++E+FK + L NV V T G D P++D I + RPT S +L Q Sbjct: 411 QYVTGETSKSERAAIVEDFKLGKIPVLCNVEVFTEGTDIPNIDSIILARPTLSRTLVTQS 470 Query: 338 VGRGLRLAPGKTDCLILDYAGNP 360 +GRGLRL KT C ++D N Sbjct: 471 IGRGLRLHKNKTCCHVVDLVDNT 493 >UniRef50_C4WDM0 Phage DNA/RNA helicase n=1 Tax=Staphylococcus warneri L37603 RepID=C4WDM0_STAWA Length = 472 Score = 323 bits (829), Expect = 9e-87, Method: Composition-based stats. Identities = 111/541 (20%), Positives = 202/541 (37%), Gaps = 95/541 (17%) Query: 1 MI----FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VL 53 M+ F L YQ++ VD H +K+ +I P G+GKS++IAE+ + A + +L Sbjct: 1 MMWMTTFKLYDYQEKLVDQA-RHILLNKSGVLIQSPPGSGKSVMIAEVVKNAVNKGNHIL 59 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSL 113 + H KEL Q ++ +++ A+N+ + Sbjct: 60 FIVHRKELSHQIKNTLTKHDVDLSQVDILSEKR--------------AKNIMHELTPPKI 105 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 ++ DE H Y+ I + P+ +G TATP+R Sbjct: 106 IVTDETHH---SRAKTYKDIYDYF----PNALRVGFTATPWRANSKGFTD---------- 148 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKK 233 ++ + + + ++IK+ L + + + D S+L+ S G F++ ++ + Sbjct: 149 ---IYDEMVKGPSVEWLIKNKRLADYDYKSVVLA--DESKLKKSSTGDFTKKSIDNAI-- 201 Query: 234 QQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL--PAEDAALITGDTPGAERDV 291 + I I+ ++A + +++A +VE +K+I +AA T ER Sbjct: 202 PKGIYGDIVENYQKYA-NGQKTILYAHSVEASKDIAEQFKLNGINAAHADAKTNIKERTQ 260 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++E+FK + L NV +++ GFD P + + RPT+S+ L+ Q R +R P K Sbjct: 261 IMEDFKKGAIKVLCNVDLISEGFDVPDCTCVILARPTDSLVLFMQQAMRSMRYQPNKK-A 319 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 LI+D+ GN P+ G + Sbjct: 320 LIIDHVGNYARHGLPDTP------------------------------HDWKKYFKGFKK 349 Query: 412 QGWFEDDDGHREQCDFRFRF-----KNCPQCNAENDIAARRCRECDTVLVDPDDMLKAAL 466 + E+DD + C+ F CP C N+ ++ L + D L Sbjct: 350 RKSKENDDIGLKTCNQCFTVYSSELYECPNCGHINETEEKK------GLENYDAELTDIK 403 Query: 467 RLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSE-RFRLQTPAQRTA-FEQLFI 524 K L + + E E L+ Y + E + P + A F L+ Sbjct: 404 PFKVDYTLM--QYDKRKKNKEDLETLEDYYLFAKANNYKESWIKFNNPYYKNAPFPVLYA 461 Query: 525 R 525 Sbjct: 462 D 462 >UniRef50_Q6FK44 Similar to uniprot|Q06683 Saccharomyces cerevisiae YDR332w n=1 Tax=Candida glabrata RepID=Q6FK44_CANGA Length = 682 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 162/376 (43%), Gaps = 37/376 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---------VLVL 55 LR YQ +A+ + L+ K + L TG GK+++ + L L R R L+L Sbjct: 27 LRDYQNDAIKSCLDAIALGKKRIGVSLATGGGKTVIFSSLINLLRQRNRGNACRFRTLIL 86 Query: 56 AHVKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFS 112 H +EL Q + + +I S+ V+ SVQS+ R L ++ G+ Sbjct: 87 VHRRELAEQAVRTTSRINEDLNIQLEMGNQNCDVSNSDVIVASVQSIIRRLHKYREGDID 146 Query: 113 LLIVDECHRIGDDEESQYQQILTHL--TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 L+I+DE H D Y+++L H N + ++G +AT R K + Sbjct: 147 LIIIDEAHHAAAD---SYKKVLKHFRCDTANTRIPVIGFSATFERYDKKSL--------- 194 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS-NGLFSEADLNR 229 K F + +Y + MI +L + + + + D S++ + F L+R Sbjct: 195 ----KESFDELVYHRGIIEMIDDNWLCESKFTTVRL-EVDLSKIPTSTLTSDFQTGALSR 249 Query: 230 ELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 L Q + I + +E K ++F + H + + A ++ T Sbjct: 250 LL-NTQTVNSIIYNSYLEKRKENNIKSSLLFGVDINHIECLERYFNERGIKAKAVSSKTS 308 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 +R I + K+ L+N + T G D P++D I + RPT+S +L Q++GRGLRL Sbjct: 309 VEDRQKAIRDIKSGELEVLLNCGIFTEGTDIPNIDCILLCRPTKSRTLLVQMIGRGLRLH 368 Query: 346 PGKTDCLILDYAGNPH 361 K C I+D+ G+ Sbjct: 369 HSKEYCHIIDFVGSTK 384 >UniRef50_A7HHG6 Type III restriction protein res subunit n=8 Tax=Bacteria RepID=A7HHG6_ANADF Length = 1418 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 104/433 (24%), Positives = 171/433 (39%), Gaps = 41/433 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHVKELV 62 Q++A+DA + A++V+ TG GK+L+ A A R RVL +AH +EL+ Sbjct: 335 QRDALDALAATRADGEKRALVVMATGLGKTLLAAYDADAFRSTLDHPIRVLFIAHRRELL 394 Query: 63 AQNHAKYQALG----LEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLI 115 Q ++ + + + R E +V SVQ ++R NL+ F ++ Sbjct: 395 VQAATTFRRVLRGAMPDLRVGWFAEDRSELEADIVVASVQKLSRPENLERLAAERFDYVV 454 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H E Y++IL+ + LLGLTATP R +G + + Sbjct: 455 VDEVHHA---EAPSYRRILSRIDP----GFLLGLTATPDRADEGDVLGLFDDNLP----- 502 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVV-QYDFSRLQAQSNGLFSEADLNRELKKQ 234 + L I+ L P + Y + + N F L ++ Q Sbjct: 503 -------FRADLGVGIEAKRLVPFAYFGLKDTVDYSHDNIPWR-NRRFDPKRLEEAVQTQ 554 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVL 292 +R+ + S + E R ++F ++ HA+ L + + D +R Sbjct: 555 ERM-ERLWSALGEHGGMR--TLVFCCSIPHAEFAKRWLEGRGVRVRAVHSDPGSDDRSRA 611 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 + + A R + V + G D P VD + +LRPTES ++ Q +GRGLR+A GK Sbjct: 612 LADLAAGRIDAVCAVDLFNEGVDVPLVDRVVMLRPTESPVVFLQQLGRGLRIAEGKERLT 671 Query: 353 ILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFAN-TFWGKTTADGTLIEHFGRRC 411 ++D+ GN H ++ V T D P G A I+ R Sbjct: 672 VIDFVGN-HRVFLDRVRTLLSLGDARPDLRAFLEGGEAELPPGCSIDVQLDAIDLLRRLL 730 Query: 412 QGWFEDDDGHREQ 424 + + Sbjct: 731 PSGANAVERAYRE 743 >UniRef50_B6H0F8 Pc12g06640 protein n=12 Tax=Leotiomyceta RepID=B6H0F8_PENCW Length = 645 Score = 323 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 97/373 (26%), Positives = 154/373 (41%), Gaps = 32/373 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LR YQ+E++ + L + I L TGAGK+++ +L R +++ Sbjct: 43 IVLRNYQEESIQSVLKYLGEGHRRLGISLATGAGKTVIFTQLISRIPPRDTKATKTMIIV 102 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR-NLDAFQGE-FSL 113 H +ELV Q + + G G ++ SVQ++AR + F F L Sbjct: 103 HRRELVEQAAKHCSLAYPDKTVEIEMGKNVATGAGDIIIASVQTLARGRMYKFDPSAFKL 162 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLR---LLGLTATPFRLGKGWIYQFHYHGMV 170 ++VDE H I Y++ L H P L+G++AT R + Sbjct: 163 VLVDEAHHI---VAKSYREALGHFGLNEPSPNGPVLVGVSATFSRFDGLKL--------- 210 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 A +Y MI +L + + S+++ S G F+ L+ Sbjct: 211 ----GAAIDHIVYHKDYVDMIGENWLANAVFTTVK-SGANLSKVKKDSFGDFALGSLSEA 265 Query: 231 LKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAE 288 + + M A RK ++F +EHA+ + A IT TP Sbjct: 266 VNTTST-NNITVRAWMASAENRKSTLVFCVDIEHARRLTAAFRDHGVDARYITASTPKGV 324 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R + FK Q F L+N + T G D P++D + + RPT S +L Q++GRGLRL PGK Sbjct: 325 RVEQLRAFKDQEFPVLLNCGLFTEGTDIPNIDCVLLARPTRSRNLLIQMIGRGLRLFPGK 384 Query: 349 TDCLILDYAGNPH 361 DC ++D + Sbjct: 385 KDCHVIDMVASLE 397 >UniRef50_B2AZI6 Predicted CDS Pa_3_4550 n=6 Tax=Leotiomyceta RepID=B2AZI6_PODAN Length = 678 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 101/437 (23%), Positives = 162/437 (37%), Gaps = 47/437 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLA 56 LR YQ+E + A L + I L TGAGK+++ L R L+LA Sbjct: 47 IQLRAYQEECIQAVLTSITQGHKRLGISLATGAGKTVIFTHLIDRVTPPNPQATRTLILA 106 Query: 57 HVKELVAQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFS 112 H +ELV Q Q+ + G + + S+QS+ L F + Sbjct: 107 HRRELVEQAARHCQSAYPNKTVEVELGNLQATGFADITVASMQSILSKDRLLKFDPSNYK 166 Query: 113 LLIVDECHRIGDDEESQYQQILTHLT---KVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 L++VDE H I Y +IL H+ K L+G++AT R + Sbjct: 167 LVLVDEAHHI---VAPGYLKILEHMNLRQKQPDSPTLVGVSATFSRSDGLKL-------- 215 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS---NGLFSEAD 226 A + +Y MI +L+ + D S ++A+ G F A Sbjct: 216 -----GAAIDEIVYHKDYIDMIADKWLSEV-VFTTVESRADLSGVRAKGAGGTGEFETAS 269 Query: 227 LNRELKKQQRITPHIISQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITG 282 L+R + + + ++ A R+ ++F + H + A + G Sbjct: 270 LSRAVNSPE-LNDIVVRAWFAKAAPPKRQSTLVFCVDLSHVAALTERFRHHGIDARYVFG 328 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 DTP ER +E FK + F L+N V T G D P++D + + RPT S +L Q++GRG+ Sbjct: 329 DTPAKERAETLEKFKKKEFPVLLNCGVFTEGTDIPNIDCVVLARPTRSRNLLIQMIGRGM 388 Query: 343 RLAPGKTDCLILDYAGNPH--------DLYAPEVGTPKGKSDNVPVQVFCPACGFANTFW 394 RL GK +C ++D + K+ + G Sbjct: 389 RLHEGKENCHVIDMVASLDVGIITTPTLFGLDPDELVAEKTGGELLA-LAREGGEKKETA 447 Query: 395 GKTTADGTLIEHFGRRC 411 + R Sbjct: 448 EGREKRMSKAAKKARPT 464 >UniRef50_C4L054 Type III restriction protein res subunit n=70 Tax=Bacilli RepID=C4L054_EXISA Length = 959 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 167/387 (43%), Gaps = 39/387 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-ARGRVLVLAHVKEL 61 Q+ A+D ++ A++V TG GK+ + A R R+L + H +++ Sbjct: 221 IKPNDMQRSALDGIDAVRQQGHQRALVVSATGTGKTYLAAFDVRRYEPKRMLFVVHREQI 280 Query: 62 VAQNHAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQGE-FSLLIV 116 + + + + G D + K VF ++Q+++++ L F E F +++ Sbjct: 281 LKKAINDFHKVIGGNIEDYGILSGTSRVIDSKYVFATIQTISKDETLYQFAQETFDYILI 340 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE HR G + YQ++L + T LLG+TATP R +++ + Sbjct: 341 DESHRAG---ANTYQKLLEYFTPKF----LLGMTATPERSDGYDLFRLFDY--------- 384 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 + YE+ L+ ++ L P + ++ D G E ++ ++L +R Sbjct: 385 ---NIAYEIRLQEALEENMLCPFHYFGVTDLEID---------GEQKEIEVFQKLVSTER 432 Query: 237 ITPHIISQIMEFAATRKG--VMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 + II +I + + + ++F ++ + A + L A +TGD A+R Sbjct: 433 V-ERIIEKIKYYGYSGEKLRGLMFCSSKKEAIYLSEQLNARGFKTCALTGDDTQAKRKQE 491 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 + N + Y++ V + G D P ++ + +LR TES ++ Q +GRGLR K Sbjct: 492 VNNLEQGLLDYILTVDIFNEGIDIPSINQVVMLRQTESSIIFIQQLGRGLRKHKSKRYVT 551 Query: 353 ILDYAGNPHDLYAPEVGTPKGKSDNVP 379 ++D+ N + Y + +S N Sbjct: 552 VIDFIANYKNNYLIPIALSGDRSQNKD 578 >UniRef50_C4FCA5 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FCA5_9ACTN Length = 984 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 102/404 (25%), Positives = 167/404 (41%), Gaps = 35/404 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q++A++A R A++V TG GK+ + ++ A RVL LAH K ++ + A Sbjct: 245 QEKALEALAALHERRDPRALLVSATGTGKTYLSAFDVKAAAPVRVLFLAHRKRILTASMA 304 Query: 68 KYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVDECHRIGDD 125 Y+ L G + F ++ LD E F +++DE HR+G Sbjct: 305 SYKKLLGDNYTYGLYRAGGDGTEFTCTFAMCSTICGYLDKIDAELFDYIVIDEAHRVG-- 362 Query: 126 EESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYEL 185 YQ+IL H LG+TATP R ++ H Y++ Sbjct: 363 -AKGYQRILEHFKPKF----CLGMTATPNRTDGYDVFALFNHV------------IAYQI 405 Query: 186 PLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQI 245 L+ ++ L P + + D F+ L +L + R+ HII +I Sbjct: 406 TLQDALREDMLAPFHYFGIADLAIDEEE-----QSDFT---LFSKLTSEARVN-HIIDKI 456 Query: 246 MEFA--ATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRF 301 E++ + ++F + +E A+E+ + I G+ AERD +I ++ Sbjct: 457 EEYSVKKDGRKGLVFCSRLEEARELAKQFTQRGYKSEAIDGNDSNAERDEVIRKLESGEL 516 Query: 302 RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361 Y+ +V +L G D P V+ I +LR TES ++ Q +GRGLR A K L+LD+ GN Sbjct: 517 EYIFSVNILNEGVDIPAVNQIIMLRRTESSIVFVQQLGRGLRKADNKESTLVLDFIGNYQ 576 Query: 362 DLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 + V K+ N G T + + E Sbjct: 577 QNFLIPVALSGDKTYNKDRLRAIVKEGSTVIPGASTVSFDRVSE 620 >UniRef50_C8P3G7 Helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3G7_ERYRH Length = 950 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 161/384 (41%), Gaps = 38/384 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q EA++ N ++ T A+++ TG GK+ + A + + ++L + H +++ Sbjct: 220 QSEALENLKNFRKQGATKALVISATGTGKTYLAAFDVKAIKPKKMLFIIHREQVAKDAMN 279 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRIGD 124 +Q++ + + K+ +F ++Q+++R NL F+ EF +++DE HR Sbjct: 280 TFQSIISDRSMGLFSGNYKDDQFDFLFTTIQTISRPQNLQKFKQNEFDYIVIDEAHR--- 336 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 + Y ++ + LG+TATP R +++ + + YE Sbjct: 337 SVANSYLNVMEYFKPKF----FLGMTATPERSDSLNVFELFDY------------NIAYE 380 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS- 243 + L+ ++ L P + +Q D + + + + + HI+ Sbjct: 381 IRLQKALEENMLVPFHYFGITDLQIDGEIIN-------DHSQFGQLV--SEDRIEHILKY 431 Query: 244 -QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIENF--KA 298 + + ++F +T + A E+ L I+ G+ ER+ I Sbjct: 432 TKYYGHCGNKLKGLMFCSTNQEASELSKKLNIRGIRTISLSGENSQEERENAIVRLTSDD 491 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y++ V + G D P ++ + +LR TES ++ Q +GRGLRL+ K +++D+ G Sbjct: 492 GDLNYILTVDIFNEGIDIPEINQVVMLRSTESSIVFIQQLGRGLRLSKNKDYVVVIDFIG 551 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQV 382 N + Y + +S + Sbjct: 552 NYSNNYMIPIALSGNRSYSKDEIK 575 >UniRef50_Q6M621 Predicted HKD family nuclease n=5 Tax=Corynebacterium RepID=Q6M621_CORGL Length = 971 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 161/384 (41%), Gaps = 41/384 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+EA+DA L+ + + VI+ TG GK+++ A R+ + RVL + H ++++ + + Sbjct: 218 QEEALDALLSLTEKGEKRGVIISATGTGKTILAALATRMLKPERVLFVVHREQILDKARS 277 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRI 122 ++ + D KE VFG++Q++ + L +F L+IVDE HR Sbjct: 278 EFIKVLERPAVDFGKMSGSTKELDKPFVFGTIQTLTKEATLSQISPTDFDLVIVDEVHRA 337 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + Y +L HL LLGLTATP R IY+ + Sbjct: 338 GAE---SYLALLNHLQPQF----LLGLTATPERTDGFNIYELFDFNVP------------ 378 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + D ++ L + HI+ Sbjct: 379 YEIRLQAALESNMLVPFHYYGVTDFTLDSETTVTDTSKL--------SALVSEERVHHIL 430 Query: 243 SQIMEF-AATRKGVMIFAATVEHAKEIVGLLPA-------EDAALITGDTPGAERDVLIE 294 + + +IF + E A+E+ LL ++ R+ ++ Sbjct: 431 EALKTYGHPENVRGLIFCSKTEEAEELSKLLDQSLFNGSLLKTKALSAKDSIPYREEVVA 490 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 ++ Y++ V + G D P V+ I ++R T+S ++ Q +GRGLR A GK ++ Sbjct: 491 ELESGDLDYILTVDIFNEGIDIPSVNQIVMIRSTQSSIVFTQQLGRGLRKAAGKDHLRVI 550 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNV 378 D+ GN + Y + S N Sbjct: 551 DFIGNYANNYLIPIALFGDNSRNK 574 >UniRef50_B7XGM0 Helicase n=3 Tax=Pseudomonas RepID=B7XGM0_PSEPU Length = 496 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 115/509 (22%), Positives = 192/509 (37%), Gaps = 66/509 (12%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVK 59 LRPYQQ+ +++ PTG+GK+ V + R + Sbjct: 1 MQLRPYQQQQDFELRKGISLGAIIQMLMSPTGSGKTEVAKHIIAGAQAKNRRAWFIVDSV 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS--LLIVD 117 +L+ Q ++ GL A + + + ++QS+ LD L+++D Sbjct: 61 KLLDQTLERFYKDGLVAGAIQSDHPCTDYRKPIQVATIQSLRPRLDYMLNHHKPHLVLID 120 Query: 118 ECH--RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 E H E + + + ++GL+ATP+R G Sbjct: 121 EAHVIHEAHIELITWCR--------RNKVPVIGLSATPWRRG----------------LG 156 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 +F I + L + G+L P + V + + NG + E +L + Sbjct: 157 RIFDRLINCISLSELTDQGFLVPTQCYAPSVPS--LKGVSTKPNGDWIEDELA-TVMGDA 213 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 ++ +++ E R M+FA V+H+K++ AA I G E + ++ Sbjct: 214 KLLGDVVTHWKELGENR-KTMVFACNVQHSKKLAAEFQKAGVAAAHIDGYMLPHETEEIL 272 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 +KA + R LV+VA+L GFD P + I RPT+S+ L+ Q++GRGLRL+P GK DC Sbjct: 273 RQYKAGKIRVLVSVAMLIKGFDDPSTSCLVIARPTKSLMLHYQMIGRGLRLSPETGKIDC 332 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 +I+D++GN P P + ++ + D E + C Sbjct: 333 IIIDHSGNLLLNGKPTDEVPDAMDNGEGERL------------DRRPQDKGDQEKKTKPC 380 Query: 412 QGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDT-VLVDPDDMLKAALRLKD 470 +C F F CP+C N+I T LV DD K Sbjct: 381 P-----------KCSFVFSGLLCPKCG--NEIVIPDGVAVATGKLVKLDDRRKVLGPTSK 427 Query: 471 ALVLRCSGMSLQHGHDEKGEWLKITYYDE 499 C + +K W + Y Sbjct: 428 QHTF-CELLGYARETGKKDGWAQYAYQAY 455 >UniRef50_A0JTK4 Type III restriction enzyme, res subunit n=17 Tax=Actinomycetales RepID=A0JTK4_ARTS2 Length = 1063 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 156/398 (39%), Gaps = 33/398 (8%) Query: 22 RHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHVKELVAQNHAKYQALGLE 75 + ++V TG GK+++ A + ++L +AH +E++ Q Y+ + + Sbjct: 342 KGFNHNLLVAATGTGKTVIAALDYKRLCEAAGRDLKLLFVAHRQEILKQAMRTYRDVMQD 401 Query: 76 ADIFAAGLK-RKESHGKVVFGSVQSVARN-LDAFQGEF-SLLIVDECHRIGDDEESQYQQ 132 + K + K +F SVQS++ ++ + +F ++++DE H Y++ Sbjct: 402 GAFGELYVGEHKPAQWKHIFASVQSLSSLGIEQLEPDFFDVVVIDEFHHA---MAPTYRR 458 Query: 133 ILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIK 192 +L HL LLGLTATP R + + + EL L + Sbjct: 459 LLDHLQPQQ----LLGLTATPERGDGVDVAKQFFD-----------GRTASELRLWDALD 503 Query: 193 HGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEF--AA 250 L P + D S+L+ + G + LN +I ++ + + Sbjct: 504 ADLLVPFHYFGVSD-DVDLSQLEWK-RGNYDTTQLNNLYTGNDARAAKVIRELRDKVTST 561 Query: 251 TRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKAQRFRYLVNVA 308 + + F +V+HA + + A + G T A+R +E + + + V Sbjct: 562 DQMRAIGFCVSVQHAHYMAEVFNRAGIASVAVDGSTDDADRAAALERLRRREINCIFAVD 621 Query: 309 VLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV 368 + G D P VD I +LRPT+S +++ Q +GRGLR A GK ++D+ G + ++ Sbjct: 622 LYNEGLDLPQVDTILLLRPTQSATIFLQQLGRGLRRAEGKAVLTVMDFIGQQRREFRFDL 681 Query: 369 GTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 F G + + Sbjct: 682 RYRALTGYRRKELEKAVEDEFPYLPSGSQIVLDRVAQK 719 >UniRef50_D1BPC6 Type III restriction protein res subunit n=2 Tax=Veillonella parvula RepID=D1BPC6_VEIPT Length = 967 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 91/420 (21%), Positives = 160/420 (38%), Gaps = 47/420 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 QQ+ + + +++ TG GK+ A R R R+L L H +++ Q A Sbjct: 213 QQQFIANFNELRANNAKRGLLISGTGTGKTYAAAFAMREMRPKRILFLVHREQIAKQAIA 272 Query: 68 KYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRI 122 ++ + + I K + VF ++Q + RN EF +I+DE HR Sbjct: 273 SFERIYNDPSITFGLVSGNAKYYNATHVFSTMQMMGRNDVMKQYAPKEFDCIIIDEVHRA 332 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G D YQ+I+ + LLG+TA+P R +Y+ H + I Sbjct: 333 GSD---SYQRIIEYFEPQF----LLGMTASPERTDGYDLYELFDH------------NII 373 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + + D + S+ +++ + II Sbjct: 374 YEIRLQQALEEDLLCPFHYFGISDLWVD-------TQEDISDMEVSFSNLSTKERVDKII 426 Query: 243 SQIME--FAATRKGVMIFAATVEHAKEIVGLLPAEDA---ALITGDTPGAERDVLIENF- 296 +I + +R ++F + AK + D +TG+ R++ I Sbjct: 427 EKIRYFGHSGSRVKGLVFCSNRVEAKALSDAFNERDVYRTVCLTGEDSQETREIAIARLT 486 Query: 297 --------KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 + Y+ V + G D P ++ + +LR TES ++ Q +GRGLR K Sbjct: 487 GTGDYQGRSDLQLDYIFTVDIFNEGVDIPEINQVIMLRQTESPIIFIQQLGRGLRKFEDK 546 Query: 349 TDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 +ILD+ GN + + + +S N G G +T I Sbjct: 547 EYVVILDFIGNYTNNFMIPLALSGDRSYNKDTLRRYVQAGN-RIIPGTSTVHFDKIAKQR 605 >UniRef50_B0SD57 DNA or RNA helicase of superfamily II n=5 Tax=Bacteria RepID=B0SD57_LEPBA Length = 1046 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 157/387 (40%), Gaps = 42/387 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL------ARGRVLVLA 56 T R YQ+ ++ + R +IV TG GK+++ A R ++ +L +A Sbjct: 314 LTPRVYQERILEELIAERRLGNNKNLIVAATGTGKTVISAFDYRRYSIINNSKPSLLYIA 373 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKES----HGK-VVFGSVQSV-ARNLDAFQGE 110 H KE++ Q + ++ + + + + + +F S+QS+ ++ + G+ Sbjct: 374 HRKEILEQALSCFRMVLQDQNFGSLFVDGINPFSGTEAPLHIFASIQSINSKQIWKILGK 433 Query: 111 --FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 F+ +I+DE H S Y+ I + T LLGLTATP R+ I + Sbjct: 434 SFFNFIIIDEVHH---SSASSYRSIFSEFTPEI----LLGLTATPERMDGESILPDFNY- 485 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 E+ L ++ L P + Q NG F +L Sbjct: 486 -----------RITSEIRLPEALEERLLCPFHYFGITD-NIQLKGEQFWKNGKFDLIELE 533 Query: 229 RELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKEIVGLLPAED--AALI 280 ++ I + + + F +V+HAK + A I Sbjct: 534 NVYTGDDITAKQRVNLIYKSINHYQPNSEELKAVGFCVSVKHAKFMAENFQKLGIDAETI 593 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 G+T R I +FK ++ + L V + G D P ++ + LRPTES++++ Q +GR Sbjct: 594 LGETDSETRRQRIIDFKQKKIKILFTVDIFNEGVDIPEINTVLFLRPTESLTIFLQQLGR 653 Query: 341 GLRLAPGKTDCLILDYAGNPHDLYAPE 367 GLR AP K +LD+ G H Y + Sbjct: 654 GLRHAPNKDALTVLDFIGQTHKKYRID 680 >UniRef50_C2E648 Helicase n=4 Tax=Lactobacillus RepID=C2E648_LACJO Length = 970 Score = 321 bits (822), Expect = 6e-86, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 161/385 (41%), Gaps = 39/385 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+ A+ N R+ A+I+ TG GK+ + A + + R L + H ++++ Sbjct: 232 QKAALGEIANLRRKDINKALIISATGTGKTYLGAFDVKNFKPRRFLFVVHREQILEDALE 291 Query: 68 KYQAL--GLEADIFAAGLKRKES-HGKVVFGSVQSVARNLDA---FQGEFSLLIVDECHR 121 + + G + + + K VF + Q+++++++ + EF ++ DE H Sbjct: 292 SFHKVIGGTKKEYGIFSGNDQSGIKAKYVFATSQTLSKDINLKQFAKDEFDYVMFDEAHH 351 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 +G SQY +I + LG+TATP R I++ + Sbjct: 352 LG---ASQYLKIFNYFEPKF----CLGMTATPERTDDFNIFKLFDY------------HI 392 Query: 182 IYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 YE+ L+ +++ L P + + Y+ + + L+ + +I Sbjct: 393 AYEIRLQDALENKMLAPFQYYGVEDYVYEDHVIS-------DTSSLSDLVA--DERVDYI 443 Query: 242 ISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 I Q + + +IF + + A+E+ L + A ++G RD ++E + Sbjct: 444 IEQTKYYGYSGDILHGLIFCSRNKEAEELAESLRQKGIQAKSLSGKDDVETRDEVVEELE 503 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 + Y+V V + G D P ++ I +LR T+S ++ Q +GRGLR PGK ++D+ Sbjct: 504 KGKINYIVTVDIFNEGIDIPCINQIVLLRSTKSSIVFVQQLGRGLRKFPGKDYLTVIDFI 563 Query: 358 GNPHDLYAPEVGTPKGKSDNVPVQV 382 G + Y + KS N Sbjct: 564 GAYDNNYMIPMALSGDKSHNRDNLK 588 >UniRef50_Q3B4P0 DEAD/DEAH box helicase-like n=2 Tax=Bacteria RepID=Q3B4P0_PELLD Length = 1065 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 162/393 (41%), Gaps = 36/393 (9%) Query: 2 IFTLRPY--QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVL 53 F LRPY QQ +D N K +++ TG GK++V A + R+L Sbjct: 338 FFDLRPYGYQQVILDDIHNERNAGKQKHLVIAATGTGKTMVAAFDYKGFAKEHSGFPRIL 397 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSV-ARNLDAFQGE- 110 ++H +E++ Q A ++ + + + + +F +VQS AR LD + Sbjct: 398 YVSHREEILKQARASFRQVMRDGSFGEILAGGSEPRSFEHLFCTVQSWNARKLDHLPPDY 457 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 ++ +++DE H D YQ ++ H+ ++ LLGLTATP R I Sbjct: 458 YAYVVLDEAHHAAAD---TYQHLIAHVRPLS----LLGLTATPERSDGEDIRNDFG---- 506 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEADLNR 229 +E+ L I+ L P +P + DFS LQ NG + + L Sbjct: 507 --------GAFTHEIRLAESIERALLAPFHYFGIPDLDGLDFSSLQWTRNG-YDVSGLRH 557 Query: 230 ELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAEDAALI--TGDTP 285 + ++ Q+ + + + + + F +VEHA + I + ++P Sbjct: 558 LVDNNSARAQWVMGQVDRYVSDIRKIRALGFCISVEHAVFMAKWCRDNSIPAIVLSANSP 617 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 R +A+ + V + G D P VD + LRPTES++++ Q +GRGLRL Sbjct: 618 SELRHNAQRQLEAREINIIFTVDLFNEGVDIPSVDTVLFLRPTESLTVFLQQLGRGLRLH 677 Query: 346 PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNV 378 K +LD+ H ++ S Sbjct: 678 DEKPHLTVLDFIAPQHRKFSFARRFRALTSRPE 710 >UniRef50_D0KYE6 Type I site-specific deoxyribonuclease n=2 Tax=Proteobacteria RepID=D0KYE6_HALNC Length = 783 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 114/551 (20%), Positives = 184/551 (33%), Gaps = 114/551 (20%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------------- 48 F R YQ A++ L H++ ++ L TG GK+ + +LA Sbjct: 150 FQSRYYQDIAIERVLAAIADHQSRILLTLATGTGKTFIAFQLAWKLFHSRWNLRDWQREA 209 Query: 49 ----RGRVLVLAHVKELVAQNHAKYQALGLEADIFAA-----GLKRKESHGKVVFGSVQS 99 R R+L LA L Q + A +A + R +G + F Q+ Sbjct: 210 EPSRRPRILFLADRNILANQAFNAFSAFPEDALVRIDPADIRKQGRVPKNGSLFFTIFQT 269 Query: 100 VARNLD-----------AFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLG 148 D F +I+DECHR G ++ES ++ IL + LG Sbjct: 270 FMSGQDAEGQPAPYFGDYPPDFFDCIIIDECHRGGANDESNWRGILAYFAPAVQ----LG 325 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD----- 203 LTATP R YQ+ F + ++ L+ I G+LTP Sbjct: 326 LTATPKRKDNVDTYQY-------------FGEPVFVYSLKDGINDGFLTPFRVKQIATTL 372 Query: 204 ---MPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAA 260 + + ++ + EAD N+ ++ ++R + M R+ ++F A Sbjct: 373 DEYVYTPDDTLVEGEIEAGKRYEEADFNKIIEIKER-EQKRVEIFMAQIDQREKTIVFCA 431 Query: 261 TVEHAKEIVGLLPA-------EDAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVL 310 T EHA + L+ + +T + GA + + +F+ L L Sbjct: 432 TQEHALAVRDLINQIKSSSNPDYCQRVTAN-DGARGEHYLRDFQDNEKTIPTILTTSQKL 490 Query: 311 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGT 370 +TG DA +V I ++RP S+ ++QI+GRG RL GK I D+ H PE Sbjct: 491 STGVDARNVRNIVLMRPVNSMIEFKQIIGRGTRLYDGKDYFTIYDFVKAHHHFNDPEWDG 550 Query: 371 PKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFR 430 + + + T DG Sbjct: 551 EPLEPEPTDPR-------PPQPPSEPTPPDGV---------------------------- 575 Query: 431 FKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGE 490 E + R + L D + + MS Q + Sbjct: 576 --------REPSSSYERKPKVKVQLSDGKARTIQHMMSTSFWHPDGTPMSAQQFMESLFG 627 Query: 491 WLKITYYDEDG 501 L + DED Sbjct: 628 RLPEFFKDEDE 638 >UniRef50_A9UTX7 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9UTX7_MONBE Length = 457 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 40/380 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVLVLAH 57 TL +Q + ++ +L F +H + +PTG+GK++V + L + +VLVLAH Sbjct: 66 TLYQHQTDCIEQSLTAFGQH-DRVAVSMPTGSGKTVVFSHLLARLPAPTPSQHKVLVLAH 124 Query: 58 VKELVAQNHAKYQALGLE--ADIFAAGLKRKESHGKVVFGSVQSVAR----NLDAFQG-E 110 EL+AQ + +A DI V+ SV ++ R L F E Sbjct: 125 RTELLAQAKRQIEAHNPNLRVDIEGGHAHADVDAADVIVASVPTLGRPSSVRLSRFDPAE 184 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHL----TKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 F L+I+DE H S Y++IL H ++L G +AT R + Sbjct: 185 FKLIIIDEAHHAA---ASTYKRILHHFFDENRSNPYDVKLWGCSATLQRHDGLGLDD--- 238 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 +F Y + L ++ G+L P + + V +++ + G + A+ Sbjct: 239 ----------VFDTIAYSVSLETLLDEGFLAPVRGMKVDV-DLKLDQVRIRK-GEYDPAE 286 Query: 227 LNRELKKQQRITPHIISQIMEFAAT-RKGVMIFAATVEHAKEIVGLLPAED--AALITGD 283 L+R + + ++ Q + R+ ++F + H ++ + A IT Sbjct: 287 LSRLVNTNAQ-NELVVEQWRRYCQNERRSTLVFGVDIRHVLDLQEQFKSGGVQAESITSL 345 Query: 284 TPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 TP AER +++ F F L+N VLT G D P VD + + RPT S +L+ Q++GRGLR Sbjct: 346 TPNAERKRILQAFSDGEFPVLLNCTVLTEGTDLPCVDALIMARPTRSHTLFVQMLGRGLR 405 Query: 344 LAPGKTDCLILDYAGNPHDL 363 L P K DCL++D A Sbjct: 406 LHPDKKDCLVIDVANTFASN 425 >UniRef50_Q6J7X8 Pas53 n=1 Tax=Actinoplanes phage phiAsp2 RepID=Q6J7X8_9CAUD Length = 567 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 117/415 (28%), Positives = 173/415 (41%), Gaps = 29/415 (6%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA--RGRVLVLAHVK 59 + LRPYQ++A++ R ++VLPTG GK++V + + RGR LVL H Sbjct: 1 MLGLRPYQEKALEGIEKAEREGVRRPLVVLPTGTGKTVVFSHGIKNRADRGRSLVLVHRD 60 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAF-----QGEFS 112 ELV Q K + E VV SVQ+ R L + F Sbjct: 61 ELVRQTIEKIGMVAPELTTGVVKADENGLDADVVVASVQTAQVDRRLAQLVEAAKRSPFG 120 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL-LGLTATPFRLGKGWIYQFHYHGMVR 171 + VDE H + ++LT L NP+ L +G TATP R K + + Sbjct: 121 TVWVDEAHHAP---APSWTKVLTGLGSFNPYGPLTVGFTATPER-DKKTLGVWERLAAFM 176 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 +A++ + + + GYL P + + D +R++ ++ G FSE DL RE+ Sbjct: 177 SIREAIYGN---GKRGKDGHEGGYLVPILPAVVVETEMDLTRVR-KTGGDFSEGDLGREM 232 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAER 289 ++ I I + A RKGV F TV A + L A + G T ER Sbjct: 233 EESGAIA-QIADAYLINAHDRKGV-AFTPTVATAHALAAALCARGIRTEALDGTTHKDER 290 Query: 290 DVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT 349 ++ K + + N VLT GFD P + + + RPT+ LY Q++GRG RL PGK Sbjct: 291 RAILRRLKTGETQVVTNCGVLTEGFDEPSISCVVVARPTKFHGLYVQMIGRGTRLYPGKK 350 Query: 350 DCLILDYAGNPHDLYAP-------EVGTPKGKSDNVPVQVFCPACGFANTFWGKT 397 D +ILD ++ K + P + CP C Sbjct: 351 DLMILDLVAASRRHEFVGYVDLGLDLDEGKKPKEGEPERQACPTCEEPCEVTEHR 405 >UniRef50_A9NH67 Putative DNA/RNA helicase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NH67_ACHLI Length = 986 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 156/385 (40%), Gaps = 34/385 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ A++ N A+I+ TG GK+ + ++ +L +VL + H +++ Sbjct: 240 QEMALEGLNNIRNSGGNKALIIAATGTGKTYLSAFDVFQLRPKKVLFVVHRGKILRDALR 299 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQG-EFSLLIVDECHRIGD 124 ++ + E + +K+ +F SVQ++++ NL+ F F +I+DE HR Sbjct: 300 TFKTIMPEVSMGEFVGSKKDLESDYLFASVQTISKIDNLNLFDPSYFDYIIIDEAHRSAA 359 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 D YQ+I ++ T LLG+TATP R IY+ + + E Sbjct: 360 D---SYQRITSYFTPKF----LLGMTATPERTDSRNIYELYDN------------QIAVE 400 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + LR ++ + P + D + + LN + II Sbjct: 401 IRLRQALEKELVVPFHYFGIEDATTDIQNINLNTEIDKLAEKLN-----IKARVELIIEN 455 Query: 245 IMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK--A 298 I ++ + + + + HA+ + + +TG T +R+ I + Sbjct: 456 IKKYKHSGDKTKALGYCVNIAHAEYMANAFNERGLVSIALTGGTAELDREDTIRRLEDPN 515 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y+ V + G D P V+LI +LRPT S ++ Q +GRGLR K +LD+ Sbjct: 516 DPLSYIFTVEIFNEGIDIPSVNLILMLRPTNSSIIFTQQLGRGLRKYKDKEYLTVLDFIA 575 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVF 383 N + + + K+ + + Sbjct: 576 NHNKNFLLPIALIGDKAYDKDDLIV 600 >UniRef50_C4RRI3 Type III restriction enzyme subunit res n=2 Tax=Micromonospora RepID=C4RRI3_9ACTO Length = 1066 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 156/377 (41%), Gaps = 31/377 (8%) Query: 5 LRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHV 58 PYQ E + + + ++V+ TG GK++V A R +L +AH Sbjct: 362 PYPYQAEILADLDTERQVHGRHRNLVVMATGTGKTVVAALDYRRLHRAGTVDSLLFVAHQ 421 Query: 59 KELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 ++++ Q+ + ++ + R+ + + VF S+QS+ R + G + ++IVD Sbjct: 422 EQILRQSLSTFRQAIGDGSFGELLVGGREPTGWRHVFASIQSLHRR-EIDPGAYDMVIVD 480 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H E Y ++L L LLGLTATP R G + ++ Sbjct: 481 EFHHA---EAPTYARLLGRLRP----RVLLGLTATPDRADGGDVRRWFD----------- 522 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 EL L ++ L P + + D S L+ + + +L Sbjct: 523 -GRTAVELHLWEALERQLLAPFQYFGVHD-DVDLSHLRWKRGQGYDPGELGGVYTGNDAR 580 Query: 238 TPHIISQIMEFAATRK-GVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIE 294 ++S + + + + F ++ HA+ + +T + + L+ Sbjct: 581 ARIVLSSVRDKVDVHRMRALGFCVSIGHAEFMADWFTRHGVPSAAVTSRADRSAQHGLLR 640 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 +F+A + R L V + G D P VD I +LRPTES +++ Q +GRGLRL K +L Sbjct: 641 DFRAGKLRVLFTVDLFNEGVDLPMVDTILMLRPTESATIFLQQLGRGLRLDDDKPCLTVL 700 Query: 355 DYAGNPHDLYAPEVGTP 371 D+ G H + ++ Sbjct: 701 DFIGGQHANFRFDLRWR 717 >UniRef50_C7NIT3 DNA/RNA helicase, superfamily II n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NIT3_KYTSD Length = 1031 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 90/377 (23%), Positives = 152/377 (40%), Gaps = 34/377 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLA------RGRVLVLAH 57 P+QQ +DA H ++V TG GK++V A + R+L +AH Sbjct: 311 PYPFQQVMLDALEAERVEHDRHRNLLVAATGTGKTVVAAFDYKRLCEATNTPRRLLFVAH 370 Query: 58 VKELVAQNHAKYQALGLEADIFA-AGLKRKESHGKVVFGSVQSV-ARNLDAFQ-GEFSLL 114 E++ Q Y+ + + G + + VF +VQS+ A L F ++ Sbjct: 371 RWEILVQARRTYREILGDGTFGEMLGRGEEPRRWEHVFATVQSLTAERLGQLPRDHFDVV 430 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 ++DE H + + Y+++LT L LLGLTATP R + Q + Sbjct: 431 VIDEFHHA---QAATYRRLLTALQPAE----LLGLTATPERADGVDVRQEFFG------- 476 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 +EL L + G LTP + D S + + G + A L Sbjct: 477 ----GRAAHELRLWDALSEGLLTPFHYFGVHD-NTDLSAVAF-TRGRYDAATLESLYTGN 530 Query: 235 QRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERD 290 ++ + + + + F V+HA+ + A +TG++ ER Sbjct: 531 DARVLLVLKAVRDKVLDPRQMRAIGFCVGVQHAQFMARKFTEAGIPARAVTGESNDEERS 590 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 + ++ ++ + + G D P VD + LRPTES +++ Q +GRGLR K Sbjct: 591 SVRQDLHHRKINVVFTADLYNEGVDLPEVDTVLFLRPTESSTIFLQQLGRGLRRHHDKAV 650 Query: 351 CLILDYAGNPHDLYAPE 367 LD+ G+ H + E Sbjct: 651 LTALDFVGHQHANFRLE 667 >UniRef50_A4J7S3 Type III restriction enzyme, res subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7S3_DESRM Length = 459 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 108/472 (22%), Positives = 197/472 (41%), Gaps = 66/472 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHV 58 +F LRPYQ+ ++ + FR + IV P GAGK++++A +A + R VL H Sbjct: 1 MFKLRPYQELLIEGVRDEFRSGRRKTCIVAPCGAGKTVIMAWMAAQSATRGQSVLFAVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 +EL+ Q+ + A+G++ I A G + ++ GS+ +VAR LD +++I DE Sbjct: 61 QELIDQSSETFTAMGIQHGIIAPG--CSATGDQIQIGSIFTVARRLDRINPP-NVIIFDE 117 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + + + +++ P ++GLTATP R +F Sbjct: 118 SHHA---KANTWVKLMEAF----PQAFVIGLTATPARTNG-------------DGMGDIF 157 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++ +I+ G LTP + PV + + L+ + G + ++D+ + + + I Sbjct: 158 ESLVLGPSVKQLIEWGNLTPYKYFAPPV-KANLDGLRVKY-GDYIKSDITLAMDRSE-II 214 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 I Q + K + + + H++ + A A I G+T R I+ F Sbjct: 215 GDAIEQYKKLT-DGKRAIAYCVSRAHSEHTAEMFRAAGIPAQHIDGETEQGVRKAAIDQF 273 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD--CLIL 354 + + L NV +++ GFD P ++ + +LRPT+S++L+ Q R +R D +I+ Sbjct: 274 RTGNIKVLCNVDLISEGFDVPAMEAVLLLRPTQSLTLHIQQSMRPMRPDKDNPDKVAIII 333 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGW 414 D+ GN + P+ + GK E R+C Sbjct: 334 DHVGNCYRHGLPDEDRS-------------------WSLEGKKKNSTGPREVSLRQCP-- 372 Query: 415 FEDDDGHREQCDFRFRFKN-CPQCNAENDIAARRCR-ECDTVLVDPDDMLKA 464 +C R CP C + R + LV D++ + Sbjct: 373 ---------KCYAAHRPAPVCPLCGYQYAPTERAEPDKRQGELVKVDEIERQ 415 >UniRef50_B8I140 Type III restriction protein res subunit n=16 Tax=root RepID=B8I140_CLOCE Length = 536 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 118/435 (27%), Positives = 193/435 (44%), Gaps = 37/435 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVK 59 LRPYQQEA A LN + + ++VL TG GK++V +++ RVL+LAH Sbjct: 1 MELRPYQQEAKQAVLNEWGKGILKTLLVLVTGGGKTIVFSKITEECVRNGERVLILAHRG 60 Query: 60 ELVAQNHAKYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 EL+ Q K + L A S +VV GSVQS+ R L+ F + F+ +I Sbjct: 61 ELLDQAADKLKKATNLGCATEKAEESCIGSWFRVVVGSVQSLMREKRLNQFPKDYFNTII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H D YQ++L+H + ++LG+TATP R + QF Sbjct: 121 IDEAHHCLSDG---YQRVLSHFNE----AKVLGVTATPDRGDMRNLGQF----------- 162 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 F YE L IK G+L P + +P+ + D S + Q+ G F DL L + Sbjct: 163 --FESLAYEYTLPRAIKEGFLCPIKAQTIPL-KLDLSGVSVQA-GDFKNGDLGNAL---E 215 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 I ++++ ++F ++ +++ +L + + +R+ ++ + Sbjct: 216 PYLESIADEMLKCCTD-HKTVVFLPLIKTSQKFKDILNKKGFRAAEVNGNSQDREQVLAD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F + ++ + N +LT G+D P VD I +LRPT+ SLY Q+VGRG RL GK L+LD Sbjct: 275 FDSGKYNVICNSMLLTEGWDCPSVDCIVVLRPTKIRSLYVQMVGRGTRLHSGKDHLLLLD 334 Query: 356 YAGNPHDLYA-PEVGT---PKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 + + + + + + C K AD + + Sbjct: 335 FLWHTERHELCHPAALICESEEVAKKMTENIEAAGCPVDIEAAEKQAADDVVAQREEALA 394 Query: 412 QGWFEDDDGHREQCD 426 + E + R+ D Sbjct: 395 KKLAEMKNRKRKLVD 409 >UniRef50_D2SCI9 Type III restriction protein res subunit n=2 Tax=Actinomycetales RepID=D2SCI9_9ACTO Length = 1035 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 160/379 (42%), Gaps = 35/379 (9%) Query: 6 RP--YQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARG-----RVLVLAH 57 RP YQQE ++A H ++V+ TG GK++V A R R R+L +AH Sbjct: 318 RPFGYQQEILEALDAERTVHGRWRNLVVMATGTGKTVVSALDFRRLRESGMVDRLLFVAH 377 Query: 58 VKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVAR-NLDAFQG-EFSLL 114 +EL+ Q+H+ + + + D ++ + VFGSVQS+ + +L F ++ Sbjct: 378 REELLTQSHSTLRHVLRQGDFGELFVGGQRPREWRHVFGSVQSLNQLDLGELDPSHFDVV 437 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 IVDE H E S Y+++L HL LLGLTATP R + + Sbjct: 438 IVDEFHHA---EASTYRRLLEHLKP----TVLLGLTATPERTDGADVRTWFG-------- 482 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 EL L ++ L P + + RL+ + + +L+ Sbjct: 483 ----GRTAVELRLWEALEQNLLAPFQYFGVHD-DVALDRLRWKRGRGYDVTELSNVYTGD 537 Query: 235 QRITPHIISQIMEFAAT--RKGVMIFAATVEHAKEIVGLLPAEDA--ALITGDTPGAERD 290 ++ + + R + F +++HA+ + +T + ER Sbjct: 538 DHRVRLVLQAVKDKVEDPGRMRALGFCVSIQHAQYMADRFTRAGIPSRAVTSTSSREERA 597 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 + + + L V + G D P VD + LRPTES +++ Q +GRGLRLA K Sbjct: 598 AALAALRDRAVNVLFTVDLFNEGLDIPTVDTVLFLRPTESATVFLQQLGRGLRLAEDKAC 657 Query: 351 CLILDYAGNPHDLYAPEVG 369 +LD+ G H + ++ Sbjct: 658 LTVLDFIGAQHKKFRFDLR 676 >UniRef50_Q8R5Z3 DNA/RNA helicase (DEAD/DEAH BOX family) n=15 Tax=Fusobacterium RepID=Q8R5Z3_FUSNN Length = 942 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 158/383 (41%), Gaps = 38/383 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q +A+ + A+++ TG GK+ + A + A+ ++L +AH K ++ ++ Sbjct: 214 QVQALKNLEETRKE-NDRALLISATGTGKTYLSAFDVKQAKAKKILFVAHRKVILERSKI 272 Query: 68 KYQALGLEADIFAAGLK-RKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIG 123 YQ + ++ + +VVF VQ++ + NL+ F + F +I+DE H G Sbjct: 273 SYQRILKNKNMEIFDNNFQINDKDEVVFAMVQTLNKEKNLNIFPKDYFDYIIIDEVHHGG 332 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ I + LLG+TATP R IYQ + + Y Sbjct: 333 ---AKTYQSIFEYFKPKF----LLGITATPERTDDFNIYQLFNY------------NVAY 373 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ +K L P + + D + ++ L + HI+ Sbjct: 374 EIRLQDAMKEELLCPFHYFGISDIVIDGESIDEKT-------SLKKL--TSDTRVKHILE 424 Query: 244 --QIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPGAERDVLIENFKAQ 299 + ++ R +IF + VE AK +V + I + + ER+ I + Sbjct: 425 NSKYYSYSGERLSCLIFVSKVEEAKILVEKFLEQGVKAIALSSENSDNEREEAIRKLEQG 484 Query: 300 RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGN 359 Y+ +V + G D P V+ + +LRPT S +Y Q +GRGLR K ++LD+ GN Sbjct: 485 EIEYITSVDIFNEGVDIPCVNQVILLRPTTSAIVYIQQLGRGLRKHKNKDYTVVLDFIGN 544 Query: 360 PHDLYAPEVGTPKGKSDNVPVQV 382 + + + S + Sbjct: 545 YEKNFLIPIAISQNNSYDKDFMK 567 >UniRef50_C1I4L0 Superfamily II DNA/RNA helicase n=6 Tax=Clostridiales RepID=C1I4L0_9CLOT Length = 1055 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 91/413 (22%), Positives = 166/413 (40%), Gaps = 39/413 (9%) Query: 1 MIFTLRPY--QQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELAR-------LARG 50 F +RPY Q+E +D +K +++ TG GK+++ A + Sbjct: 317 FSFDIRPYAYQKEILDKLRVEREIFNKNKNLVIAATGVGKTVISAFDYKNFCKENKKQPN 376 Query: 51 RVLVLAHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSV-ARNLDAF- 107 R+L + H +E++ Q ++A+ + + + +F S+QS+ +++L Sbjct: 377 RLLFVVHREEILKQARDTFRAILKDNNFGDLMVGGNVPESLEHLFVSIQSLNSKDLCEIT 436 Query: 108 -QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 + + +IVDE H YQ++L++ LLGLTATP R I+++ Sbjct: 437 TEDYYDFIIVDEFHHAA---APSYQRLLSYYKPKV----LLGLTATPERADNKDIFKYFE 489 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 E+ L I L+P + + D ++++ Q G ++ ++ Sbjct: 490 ------------DRISGEIRLPEAIDRKLLSPFQYFAVSD-SVDLTQIKWQRKG-YNLSE 535 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGVMI--FAATVEHAKEIVGLLPAEDAALI--TG 282 L+ I++ + ++ V+ F + EHAK + A I T Sbjct: 536 LSNVYTGNDIRVNEIVTALKKYVTDIDDVIGLGFCVSKEHAKFMSKRFNELGIASIALTD 595 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 ++ ER + +++ + G D P V+ I LRPTES++++ Q +GRGL Sbjct: 596 ESRKEERSEAKSKLVNKEIKFIFVADLYNEGVDIPEVNTILFLRPTESLTVFLQQLGRGL 655 Query: 343 RLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWG 395 RL K +LD+ G H Y E + GF G Sbjct: 656 RLHENKECLTVLDFVGQAHKNYDFEEKFRALIGRSKSSVKDYIENGFLTLPKG 708 >UniRef50_A7FVD5 Restriction/helicase domain protein n=10 Tax=Bacteria RepID=A7FVD5_CLOB1 Length = 968 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 82/436 (18%), Positives = 174/436 (39%), Gaps = 37/436 (8%) Query: 7 PYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQN 65 Q+ A++ + + A+++ TG GK+ + ++ ++L L H +E++ ++ Sbjct: 228 DMQKRALENLKRLRKSEEDKALVIAATGTGKTYMSAFDVIEYNPKKMLFLVHREEILRRS 287 Query: 66 HAKYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDECHRI 122 ++ L K +F ++Q++ + F+ EF +++DE H I Sbjct: 288 EKTFKKLVKNKNKTTGLLTGNSKAIDSDYLFSTIQTMGKQFQNFKKDEFEYIVIDEAHHI 347 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 Y++++ + LLG+TATP R I+ + + Sbjct: 348 SS---PLYERVINYFEPKF----LLGMTATPERCDGKNIFDIFNN------------NVA 388 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQ-YDFSRLQAQSNGLFSEADLNRELKKQQRITPHI 241 E+ LR ++ + P + ++ D S ++ Q ++ + L +R+ I Sbjct: 389 LEVRLREALELELVIPFHYFGITDIEDIDLSDVKVQ-----DLDEIAKRLNVNKRV-DFI 442 Query: 242 ISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAEDA--ALITGDTPGAERDVLIENFK 297 I ++ + + + F ++HAK + +TG+ ER++ I+ + Sbjct: 443 IDKMNFYGHDGEKRKCVGFCVNIDHAKYMADEFNKRGIHSVFLTGNNSANERELYIKKLE 502 Query: 298 AQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 + + V + G D P ++LI +LRPT S ++ Q +GRGLR P KT +LD Sbjct: 503 DDKDDLEVIFTVDIFNEGIDIPSINLILMLRPTNSPIVFIQQLGRGLRKYPNKTFLTVLD 562 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTL-IEHFGRRCQGW 414 + GN + + + + + A F+N + IE + Sbjct: 563 FIGNHNKTFLIALALNGSRYYDKDSLKVAVATQFSNLAGCTNIQMDRISIERILEQLNKE 622 Query: 415 FEDDDGHREQCDFRFR 430 + + ++ F+ Sbjct: 623 NFNSMKYLKEDYMEFK 638 >UniRef50_Q82Z57 Helicase, putative n=6 Tax=Lactobacillales RepID=Q82Z57_ENTFA Length = 964 Score = 317 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 154/380 (40%), Gaps = 38/380 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-RGRVLVLAHVKELVAQNHA 67 Q+EA+ + T +IV TG GK+ + A + RVL + H + ++ + Sbjct: 226 QKEALRSLKALRETGATKGMIVSATGTGKTYLAAFDVQQFHPKRVLFIVHSELILMKALE 285 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 ++ + G + D K K +FG++Q+V++ + E F +++DE H+ Sbjct: 286 SFKLILGGKDDDYGVLSGNSKNFDAKYLFGTIQTVSKSEYQERLGKEAFDYILIDEVHKA 345 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G Y + + LLG+TATP R I++ + + Sbjct: 346 G---AKSYIKAIEFFNPKF----LLGMTATPERTDNFNIFELFDY------------NVA 386 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + + D + + DL R L Q+ +I Sbjct: 387 YEIRLQAALEAELLCPFYYFGVTDYEKDGEIIDETT-------DLKRLL--QKERVDFLI 437 Query: 243 SQIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKA 298 +I + ++F + + A+++ + ++GD +R+ I+ Sbjct: 438 KKINYYGYSGDSPRGLVFCSRKDEARQLAEMFNDRGIPSAYLSGDHNFDKREKEIKRLDT 497 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAG 358 Y+ V + G D P V+ + +LR T+S ++ Q +GRGLR P K ++D+ G Sbjct: 498 GEIHYIFTVDIFNEGIDIPKVNQVIMLRNTQSSIIFIQQLGRGLRKDPSKEFVTVIDFIG 557 Query: 359 NPHDLYAPEVGTPKGKSDNV 378 N + Y + S Sbjct: 558 NYKNNYMIPMALSGDSSQTK 577 >UniRef50_D2MPK0 DEAD/DEAH box helicase n=2 Tax=Firmicutes RepID=D2MPK0_9FIRM Length = 528 Score = 317 bits (812), Expect = 9e-85, Method: Composition-based stats. Identities = 116/433 (26%), Positives = 185/433 (42%), Gaps = 40/433 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVK 59 LRPYQ+EA A + ++VLPTG GK++V +++ RVLV+AH Sbjct: 1 MELRPYQEEARRAIEKEWASGVKNTLLVLPTGCGKTVVFSKVIEDQVKEGKRVLVMAHRG 60 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLI 115 EL+ Q K + GL I A + +VV GSVQS+ R L F + F +I Sbjct: 61 ELLDQATDKLHKMTGLTCAIEKADQSCLGTWNRVVVGSVQSLMRPSRLAKFNKDYFDAII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H D Y ++L H + N +LG+TATP R + Sbjct: 121 VDEAHHAVSD---TYTRVLEHFDQAN----VLGVTATPERSDMRKL-------------G 160 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 +LF+ YE + IK GYL + +P+ + D + + G FS ++ L Sbjct: 161 SLFQSLAYEYSIVQAIKEGYLCKIKAQTVPL-KIDMNNVSVTV-GDFSANEIGTAL---D 215 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 I +++ R ++F + +++ +L + +R+ ++++ Sbjct: 216 PYLEQIATEMETVCKDR-KTVVFLPLIATSQKFKNILINHGFKAAEVNGNSDDREQILKD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F ++ + N +LT G+D P VD I +LRPT+ SLY Q+VGRG RL+PGK D LILD Sbjct: 275 FNDNKYNVICNSMLLTEGWDCPDVDCIVVLRPTKVRSLYCQMVGRGTRLSPGKEDLLILD 334 Query: 356 YAGNPHDLYA----PEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 + + T K S + + C K + R Sbjct: 335 FLWLSERHELCRPADIICTDKEVSKKMTENLAESGCPEDIEEAEKEASSD---VQMQREE 391 Query: 412 QGWFEDDDGHREQ 424 + + + + Sbjct: 392 ALKAQLEAMKKRR 404 >UniRef50_C6I028 Putative helicase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I028_9BACT Length = 1039 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 155/385 (40%), Gaps = 45/385 (11%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARG-----RVLVL 55 + P+Q+E ++ H ++V TG GK+++ A R R R+L + Sbjct: 299 ALSPYPFQEEILEKLAVEREVHGRTKNLVVAATGTGKTVIAALDFRRLREKMPRARLLFV 358 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVARN--LDAFQGEFS 112 AH +E++ Q+ ++ + + L G + +F SVQ +A LD+ ++ Sbjct: 359 AHRREILEQSLLTFRRALGDPNFGRILLPDGPPGGSEHLFVSVQLLASRSLLDSLSPDYF 418 Query: 113 LLIVDECHRIGDD------EESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 + E Y+++L+ L+ LLGLTATP R I + Sbjct: 419 D--------VVVVDEVHHGEAPTYRRLLSRLSPRI----LLGLTATPERSDGLDIRSWFD 466 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 E+ L I G L P + D+ ++ + G ++ +D Sbjct: 467 ------------GRIAAEIRLPEAIGRGLLVPFHYFGVSD-SVDYRSVRWE-RGRYNLSD 512 Query: 227 LNRELKKQQRITPHIISQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED--AALITG 282 L+ + I+ + + + + + F +V HA + + + + Sbjct: 513 LDNVITGDDLRAGIILKAVSNYLSDPRKARGLGFCVSVNHAIRMAEIFNRAGLPSEALHA 572 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 TP R+ + +L V + G D P VD + LRPTES++++ Q +GRGL Sbjct: 573 GTPSDRRERVRSRLSNGELSFLFTVDLFNEGVDIPEVDTVLFLRPTESLTVFLQQLGRGL 632 Query: 343 RLAPGKTDCLILDYAGNPHDLYAPE 367 RL PGK +LD+ G ++ E Sbjct: 633 RLFPGKEVLTVLDFIGQSRAEFSFE 657 >UniRef50_Q14JJ7 DNA/RNA helicase n=18 Tax=Francisella RepID=Q14JJ7_FRAT1 Length = 913 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 155/382 (40%), Gaps = 38/382 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q EA+++ K A+I+ TG GK+ + ++A + R L + H + + Sbjct: 193 QCEALESLRQLRDSGKNKALIISATGTGKTFLSAFDIASIKPKRCLFVVHRTNIAIKAQE 252 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQ-GEFSLLIVDECHRIGD 124 + + + + K + + +F +VQ++ ++ L F+ EF +I+DE H Sbjct: 253 TFAKVISDKTLGLYTGGNK-TSAEYLFATVQTLKNSKVLANFKSQEFEYIIIDEVHHA-- 309 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 E Y+++L H T LLG+TATP R I++ + + YE Sbjct: 310 -EAESYKKVLAHFTPKF----LLGMTATPERSDAADIFKLFDY------------NIAYE 352 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + L ++ L P + + + + + + + HII + Sbjct: 353 IRLHQALEQDLLCPFHYFAVEDLYLESEEI--------LAKNFAKLV--SDVRVEHIIEK 402 Query: 245 IMEFAATR--KGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQR 300 I + + + ++F + V+ AKE+ + A ++ R I ++ Sbjct: 403 INFYGYSGQSRAALMFVSNVDEAKELATKFSNKGIKAKALSSQDSEQIRQTTIAQLESGE 462 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 +V V + G D P ++ I +LRPT+S +Y Q +GRGLR K +ILD+ N Sbjct: 463 LEIIVTVDIFNEGVDIPCINQIILLRPTQSAIVYIQQLGRGLRKYQDKKFVVILDFIANY 522 Query: 361 HDLYAPEVGTPKGKSDNVPVQV 382 + + V S + Sbjct: 523 TNNFLIAVALSGDNSYDKDELK 544 >UniRef50_C7NAB7 Type III restriction protein res subunit n=3 Tax=Leptotrichia RepID=C7NAB7_LEPBD Length = 1090 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 153/386 (39%), Gaps = 50/386 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------------------ 50 Q+ ++ +++ TG GK+ + A + Sbjct: 302 QKRVLEKLKETRENGNKKGLVISATGTGKTYLAAMDIKQFFEINSNNKNKLFEINEKKSK 361 Query: 51 ----RVLVLAHVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNL 104 + L +AH +EL+ + + + KE + ++F S+QS+ Sbjct: 362 ISNIKFLFIAHREELLENAMNVFSRILKIDKNKFGRIYGGLKEINKSMIFASIQSLRNCY 421 Query: 105 DAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 + F+ F +IVDE H D Y + L++ LLGLTATP R+ I Sbjct: 422 NEFKHNFFDYIIVDEFHHSMSD---SYLKTLSYFQSKF----LLGLTATPKRMDGKDILS 474 Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFS 223 + + + E+ ++ ++ + P + ++ + + NG ++ Sbjct: 475 LCDY------------NVVDEIGIKEALEEDLIVPFHYFGVNDYTINYDNIPYK-NGKYN 521 Query: 224 EADLNRELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AAL 279 E L L T +I+ +I F + F +EHA + + +A+ Sbjct: 522 EKILLENLLLN-TRTDYIVEKINRFGFDGNELSAVAFCQNIEHASFMKEEFTKKGYKSAV 580 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 IT + +R +++ FK ++ L V +L G D P ++L+ LRPT S +++ Q +G Sbjct: 581 ITANISSNDRAEILDKFKNKKIEILCVVDILNEGIDIPTINLLLFLRPTMSSTIFIQQIG 640 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYA 365 RGLR A K I+D+ GN Y Sbjct: 641 RGLRKAENKDFVTIIDFIGNHKKDYL 666 >UniRef50_A5F3B5 Helicase-related protein n=24 Tax=Gammaproteobacteria RepID=A5F3B5_VIBC3 Length = 979 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 30/362 (8%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-RVLVLAHVKELVAQNHA 67 Q EA+ A + + ++VL TG GK+ + A A + +VL +AH +E++ Q Sbjct: 222 QVEALTALNATRAQGFSRGLVVLATGMGKTWLAAFDALQTQSTKVLFVAHREEILLQAEK 281 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECHRIGD 124 + L A + + ++F SV ++ + +L F F ++VDE H Sbjct: 282 TFCQLIPNAKTGLYNGVTQNTQAMLLFASVATIGKQNHLQRFAADHFDYIVVDEFHHAA- 340 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 Y+ +LT+ LLGLTATP R + I + ++E Sbjct: 341 --ARSYRNLLTYFKPKF----LLGLTATPERSDQADILSLCDS------------NLVFE 382 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 L + I L P + + ++ + + NG F L+ L QR H+ Sbjct: 383 RNLVHGIDEKILVPFDYHGIYDQAVNYQEIPWR-NGKFDPDSLDNALAT-QRRAEHVYQH 440 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALI-TGDTPGAERDVLIENFKAQRFRY 303 + TR + F + +HA + ++ I R+ ++ + + Sbjct: 441 WHQKKQTR--TLAFCVSKKHADFMAEFCLSKGIKAIAVYSDSKVRRNQALQWLDSGKIDI 498 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPH 361 L +V + G D P +D I +LRPTES L+ Q +GRGLR + K+ +++D+ GN Sbjct: 499 LFSVDLFNEGTDLPAIDTILMLRPTESKILFLQQLGRGLRRSIETQKSKLVVIDFIGNHD 558 Query: 362 DL 363 Sbjct: 559 SF 560 >UniRef50_Q5KCW6 DEAD box family helicase, putative n=1 Tax=Filobasidiella neoformans RepID=Q5KCW6_CRYNE Length = 706 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 164/399 (41%), Gaps = 58/399 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---------------RL 47 TLR YQ+ A+ A L+ + + PTG+GK+ + L R Sbjct: 64 ITLRSYQEAAISACLDALQSGSRRLGVSSPTGSGKTTIFLSLIPRVPFYASRGNDSHPRD 123 Query: 48 ARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESH--GKVVFGSVQSVAR--N 103 +G+ L++ + EL Q + L + ++ + V + Q++ Sbjct: 124 GKGQTLIIVNSVELAEQTQKSAERLLGDEWTIEIEQSKRVASGLADVTIATYQTLNNPDR 183 Query: 104 LDAFQG-EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR---------------LL 147 L F +F L+IVDE H Y ++L + + + ++ Sbjct: 184 LSKFDPSKFKLVIVDEAHH---SAAPSYLRLLHYFNEDVKIPKSPQAPSPHLHGFKVPII 240 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV 207 G +AT R + ++ + F + ++ ++ M+ +L P + L + Sbjct: 241 GFSATFSRADQHSLH-------------SAFEEIVFHRDMKDMLSEKHLAPAK-LTIVKA 286 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 + ++ S G F A L R++ + I I+ + A+ R+ ++F +EH Sbjct: 287 DLELDEVETSS-GDFKNAALARKVNTTE-INELIVRTYLHRASERRSTLVFCVDLEHVSA 344 Query: 268 IVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAIL 325 + + A ++ + R I F F L+N VLT G D P +D I + Sbjct: 345 LTQTFRSAGIDARSVSSKSKPEMRKATIAAFGKGEFPVLINCEVLTEGTDIPQIDCILLA 404 Query: 326 RPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHD 362 RPT+S +L Q+VGRGLRL+P GKTDC I+D + + Sbjct: 405 RPTQSRNLLVQMVGRGLRLSPESGKTDCHIIDLVDSVAN 443 >UniRef50_A9G978 Putative uncharacterized protein n=2 Tax=Myxococcales RepID=A9G978_SORC5 Length = 557 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 135/419 (32%), Positives = 183/419 (43%), Gaps = 32/419 (7%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LRPYQ+ AVDA L RR V+ LPTGAGK+++ + LARLAR +VLVLAH +EL+ Q Sbjct: 18 LRPYQRAAVDAVLAARRRGVRRMVVCLPTGAGKTVIFSHLARLARRQVLVLAHREELLFQ 77 Query: 65 NHAKYQALGLEADIFAA--GLKRKESHGKVVFGSVQSV-ARNLDAFQG--EFSLLIVDEC 119 K + A G R + +V+ S++S+ + L+ G + L+I DEC Sbjct: 78 AKDKIERALAGQATVAVEQGELRAPADARVIVCSIRSLHEKRLEQVTGGRDIGLVIYDEC 137 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H D+ + + L LLG TAT R + +F Sbjct: 138 HHAPADDNRRVLRQLGAFDPAWTGT-LLGFTATTARGDGKGLDD-------------VFE 183 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 +Y L MI GYL P + D S L A F+ +L + ++R Sbjct: 184 AIVYSRSLPEMIADGYLAPLTGYRVATAT-DLSPLAA-GGLDFATDELEEAVDMEER-NA 240 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFK 297 + I E A R+ + F TV HA+ + L + GD P R ++ +F+ Sbjct: 241 LVARSIQELARDRR-TIAFCVTVAHARNLSKALNHLGVRSAYVHGDMPSDLRGRILADFR 299 Query: 298 AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYA 357 +R + L NVAVLT GFD P V IA+ RPT S LY Q VGRG RL PGK DCLILD+ Sbjct: 300 EERVQVLTNVAVLTEGFDDPGVSCIAMARPTRSDGLYAQCVGRGTRLHPGKKDCLILDFV 359 Query: 358 G-------NPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGR 409 L+ D F F + TL E R Sbjct: 360 DLSSLQLCTLPSLFGMPRDLDLEGRDASEASRFFRQVTFDYPGFEVEAGRITLREIQER 418 >UniRef50_B0CPP8 Predicted protein n=4 Tax=Agaricomycetes RepID=B0CPP8_LACBS Length = 635 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 97/390 (24%), Positives = 161/390 (41%), Gaps = 49/390 (12%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA--------RGRVLVLA 56 LRPYQ++ +DA L + + LPTG+GK+ V L R L++ Sbjct: 28 LRPYQEQCLDACLEALASGVSRIGVSLPTGSGKTTVFVSLLSRLVPSAWNPVATRSLIIV 87 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESH--GKVVFGSVQSVAR--NLDAFQGE-F 111 + EL Q+ ++ +L + + + ++ V + Q++ L F Sbjct: 88 NSVELARQSASQVASLFPQWSVEIEQGAKYKASGFADVTIATYQTLKSAERLAKFDPHKL 147 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHL-------------RLLGLTATPFRLGK 158 +IVDE H Y+++L H H ++G +AT R Sbjct: 148 KAVIVDEAHHAA---APSYRKVLAHFHPDIKHPDPLFAAPSPPHRIPIVGFSATFSRHDG 204 Query: 159 GWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS 218 + ++F +Y MIK +L P + D + + Sbjct: 205 LAL-------------GSIFERIVYHRDFLEMIKEQWLCPVRVTSVR-ASIDLKSVTINT 250 Query: 219 N-GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED- 276 G F+ L + + I ++ ++ A+TRK ++F V H + Sbjct: 251 RTGDFNPTSLAHVI-NTETINELVVKTWIDRASTRKSTLVFCVNVAHVHTLTQSFRQFGV 309 Query: 277 -AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQ 335 A + TP AER L+ FKA F LVN A+LT G D P++D + I RPT S +++ Sbjct: 310 DARYLHAGTPIAERKALVAMFKAGHFPVLVNCAILTEGADIPNIDCVLIARPTRSRNVFA 369 Query: 336 QIVGRGLRLAPG--KTDCLILDYAGNPHDL 363 Q++GRG+RL+P K DC I+D G+ + Sbjct: 370 QMIGRGMRLSPNTDKGDCHIIDLVGSLSRM 399 >UniRef50_Q5FLU2 Phage related helicase n=3 Tax=Lactobacillus acidophilus RepID=Q5FLU2_LACAC Length = 864 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 167/386 (43%), Gaps = 41/386 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+EA+ + + K A+I+ TG GK+ + A + + R L + H ++++ ++ Sbjct: 227 QKEALGEIQSLRQNGKNKALIISATGTGKTYLGAFDVQKFKPKRFLYVVHREQILQKSRN 286 Query: 68 KYQAL----GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECH 120 + + + I++ G R+ K +F +VQ++A+ NL F + F ++ DE H Sbjct: 287 SFYDVIGGAYSDYGIYS-GNHREGLKSKYIFATVQTLAKDENLKKFARDAFDYILFDEAH 345 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 +G +E +I + LG+TATP R IY+ + + Sbjct: 346 HLGSVQE---LKIFNYFQPQF----CLGMTATPERTDDFNIYKLFDY------------N 386 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 YE+ L+ + L P + Y + L + A + L +R+ + Sbjct: 387 IAYEIRLQNALDQDMLCPFHYYGVEDYIY--------QDELINGATSLKRLVSDERVN-Y 437 Query: 241 IISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIENF 296 I+ Q + + + +IF + + A+ + L + I+G ER+ ++ Sbjct: 438 ILQQTDYYGYSGRTLHGLIFCSRKKEAEILAEKLTEKGCPALAISGTDSIGEREKAVKKL 497 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 + + +Y+V V V G D P ++ I +LR T+S ++ Q +GRGLR GK ++D+ Sbjct: 498 EKGKVKYIVTVDVFNEGVDIPCINQIVLLRNTQSSIVFVQQLGRGLRKYKGKDYLTVIDF 557 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQV 382 GN + Y V KS N Sbjct: 558 VGNYDNNYLIPVALTGDKSHNRDQVR 583 >UniRef50_B1XQS3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XQS3_SYNP2 Length = 471 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 107/375 (28%), Positives = 169/375 (45%), Gaps = 33/375 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 F LRPYQ + V L +H V LPTG GK+++++ +A R VL+L+H Sbjct: 4 FQLRPYQAQMVSEILGSLAQH-DSVVGQLPTGGGKTIILSAIANEFIKRGSPVLLLSHRD 62 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-FSLLIVD 117 ELV Q K A+ G I AG + SVQS+ R L + + F +IVD Sbjct: 63 ELVNQGADKLAAVSGQPVGIIKAGYP-DNGDRLIQSASVQSLVRRLHKYSPDRFGAIIVD 121 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 ECH + Y++IL H K +LG TATP R + L Sbjct: 122 ECHHT---TANTYRKILDHFEK----AYVLGFTATPCRGDGAGLDD-------------L 161 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F + ++ +I+ G+L+ L + G ++ L L + ++ Sbjct: 162 FSHMVTGPTIKQLIEVGHLSRYRYLAAEKSMV--VKGAKVRRGDYTSKSLA-ALNPRDQL 218 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIEN 295 ++S + ++FA +++K + A I G+TP R +E Sbjct: 219 AADLVSSYFQHC-DGMRCLVFAIDRDYSKATAAMYQAHGVPAIHLDGETPQHIRKAALEA 277 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+A + + NV + T G D P V+ + + RPT+S+ L+QQ+ GR LR+APGK++ +I+D Sbjct: 278 FQAGEIKVVCNVGLFTEGTDLPAVEALQMARPTKSLGLFQQMTGRVLRVAPGKSEAIIID 337 Query: 356 YAGNPHDLYAPEVGT 370 +AGN P Sbjct: 338 HAGNWEMHGLPCDDR 352 >UniRef50_Q6F1F2 DNA repair DNA/RNA helicase n=3 Tax=Entomoplasmatales RepID=Q6F1F2_MESFL Length = 905 Score = 315 bits (807), Expect = 4e-84, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 154/391 (39%), Gaps = 39/391 (9%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------RVLVLAHV 58 L +Q+E +D +K ++++ TG GK+LV A + G ++L LAH Sbjct: 203 LYKFQKEIIDKLSYRRHINKNKNLVIMATGTGKTLVSAFDYKRQSGQAKKDLKILFLAHQ 262 Query: 59 KELVAQNHAKYQALGLEADIFA-AGLKRKESHGKV-VFGSVQSVARNLDAF-QGEFSLLI 115 +E+V Q Y+ + S + +F ++Q+++ L+ F +F +++ Sbjct: 263 REIVDQAIKTYRHVLENNKFGEVMYDGSINSEKPIHLFATIQTLSTRLNKFKPNDFDIIV 322 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 DE H I + + ++ + +LGLTATP R I + Sbjct: 323 YDEAHHIA---ANTFDKVFNYFKPQQ----ILGLTATPEREDNKDIKAYFD--------- 366 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + EL L I L P + + + + S+ ++ Sbjct: 367 ---DEYATELRLWDAIDQKLLCPFDYYCIDDTNTNLQGVNLNSDKDI------FKVVNTD 417 Query: 236 RITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDV 291 + I ++ R +IF TVEHA I L +++ A ++T +R Sbjct: 418 SRNELLFKTIEKYLGVYARPTALIFCVTVEHAINISNYLNSKNLKAEVLTSQ-NTKDRKR 476 Query: 292 LIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 ++ F R YL V + G D P ++ I +LRPT S ++Y Q +GRGLR K Sbjct: 477 ILHEFSTGRINYLCVVNIFNEGVDIPEINTIILLRPTNSKTVYLQQLGRGLRKTELKNKL 536 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 + D N + Y +G + + Sbjct: 537 EVYDLISNIDNKYDITLGIRNLFNPAIRSSK 567 >UniRef50_Q04L29 Type I restriction-modification system, R subunit, putative n=31 Tax=Streptococcus RepID=Q04L29_STRP2 Length = 1116 Score = 314 bits (806), Expect = 5e-84, Method: Composition-based stats. Identities = 96/481 (19%), Positives = 166/481 (34%), Gaps = 72/481 (14%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 R YQ+ A+ + F H+ A++V+ TGAGK+ L + VL LA Sbjct: 347 RHYQKHAIASVCEAFSNHRRQALLVMATGAGKTRTAVSLVDILSRHNWVKNVLFLADRTS 406 Query: 61 LVAQNHAKYQALGLEADIFA-AGLKRKESHGKVVFGSVQSVARNLDAFQ---------GE 110 LV Q + ++ L + + K ++VF + ++ + + G Sbjct: 407 LVKQAYDSFRKLLPDLSVCNFLEDKEGAQSSRMVFSTYPTMIGAISGQEEVNQRPFTVGH 466 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+I+DE HR +Y+ I + R++GLTATP + Y F Sbjct: 467 FDLIIIDESHR---SIYQKYKSIFDYFDA-----RIVGLTATPRQDLDKNTYGFFNLEN- 517 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM----PVVQYDFSRLQAQSNGLFS--- 223 Y L +K GYL ++ P + L + F Sbjct: 518 --------GVPTYAYDLEEAVKDGYLVAYHSIETKLKLPTDGLHYDDLSEEEKEHFDSKF 569 Query: 224 -----EADLNRELKKQQRITPHIISQIMEFAATRK----------GVMIFAATVEHAKEI 268 E D++ + + ++ TR +IFA +HA+ I Sbjct: 570 EDDSCEKDIDGSVFNSFVFNKSTVEIVLNELMTRGIQTASGDEIGKTIIFAKNHDHAEYI 629 Query: 269 VGLLPAED-------AALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAPHV 319 G+ A +I LI++FK + + ++V +L TG D P V Sbjct: 630 RGIFNNRYPEKGSDYAQVIDY--SIKHYQTLIDDFKIEEKYPQIAISVDMLDTGIDVPEV 687 Query: 320 DLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPEVGTPK 372 + + S + + Q++GRG RL K + L+ DY N A Sbjct: 688 VNLVFFKKVRSKTKFWQMIGRGTRLCKDLFGPEQDKENFLVFDYGDNFDYFRADPRDGEG 747 Query: 373 GKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFK 432 ++ ++F G + + ++ + + DFR R Sbjct: 748 RHIVSLTQRLFNIKVDLIRELQGLQYQEDQFARAYRQQLVSELQGRIESLNELDFRVRMV 807 Query: 433 N 433 Sbjct: 808 L 808 >UniRef50_C0XQJ4 Possible helicase n=2 Tax=Corynebacterium RepID=C0XQJ4_9CORY Length = 943 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 170/388 (43%), Gaps = 41/388 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q EA++ + A+I+ TG GK+++ A R + RVL +AH ++++ + Sbjct: 182 QTEALENLQRVIDAGERRAIIISATGTGKTILSALAVRQIKPRRVLFVAHREQILNKAAE 241 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVAR---NLDAFQGEFSLLIVDECHRI 122 ++Q + DI +RKE++ ++VF ++QS+ R + +F L+IVDE HR Sbjct: 242 EFQRVLACPPTDIGFIVGQRKEANQRLVFATIQSLGRGDTLSEISPKQFDLVIVDEVHRS 301 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G + YQ++L H LGLTATP R +++ + + Sbjct: 302 GAE---SYQKVLNHFRADFT----LGLTATPERTDGFNVFELFDYNVP------------ 342 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L +++ L P + + + F + S+ ++L +R+ H+ Sbjct: 343 YEIRLEDALENHMLVPFDYYGVSDYESAFGSV-------ISDNSTLQQLAAPERVH-HLA 394 Query: 243 SQIMEFA-ATRKGVMIFAATVEHAKEIVGLLPAEDAA-------LITGDTPGAERDVLIE 294 I +++ A +IF ++ A + L E ++G R+ +E Sbjct: 395 KIIQDYSFARGSKGLIFCSSNAEAAALSKGLNTESVHGRPLRTIALSGGDSIETRENTVE 454 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 Y++ V + G D P V+++ +LR T+S ++ Q +GRGLR GK ++ Sbjct: 455 KLAQGEIDYILTVDIFNEGIDIPPVNVVVMLRSTQSSIVFTQQLGRGLRKYAGKRSLRVI 514 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 D GN + V +S + V Sbjct: 515 DVIGNYATNFLVAVALTGDRSGSKDVIK 542 >UniRef50_Q759H6 ADR302Wp n=1 Tax=Eremothecium gossypii RepID=Q759H6_ASHGO Length = 691 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 154/372 (41%), Gaps = 35/372 (9%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-------RVLV 54 LR YQQ +D L + + L TG GK++V A L R R LV Sbjct: 46 ALPLREYQQACIDECLRCIADGRRRIGVSLATGGGKTVVFANLLNALRQEQQGRRFRALV 105 Query: 55 LAHVKELVAQNHAKYQALGLEADI--FAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEF 111 L H +EL Q + E ++ A + VV SV S+ R LD + G Sbjct: 106 LVHRRELAQQATRTLKRCAPELNVQVEMASQRANLETADVVVASVLSLIRRLDQYPRGSI 165 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL--LGLTATPFRLGKGWIYQFHYHGM 169 +I+DE H + Y ++L HL ++ +G +AT R + + + Sbjct: 166 DAIIIDEAHHAAAE---SYLRVLEHLGAGTKDTKVPVIGFSATFERADRKALSRAM---- 218 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 + ++ + MI +L + V D ++ S F + L++ Sbjct: 219 ---------DEIVFHKGILEMIDEKWLCEGRFTTVDV-DADLDGVEM-SGSDFQLSSLSQ 267 Query: 230 ELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AALITGDTP 285 + +++ +++ + K ++F V H K + L A A +T T Sbjct: 268 -VMNTEQVNRIVLNTYLHKRREHKLKSALLFGIDVSHVKSLCKLFQANGIEAQYVTAKTR 326 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ERD ++E+F+ L+N + T G D P++D + + RPT S +L Q++GRGLR Sbjct: 327 PTERDSIVEDFRRGDIEVLMNCGIFTEGTDIPNIDCLLLCRPTRSRTLLVQMIGRGLRQH 386 Query: 346 PGKTDCLILDYA 357 K C ++D+ Sbjct: 387 HSKDHCHVIDFV 398 >UniRef50_Q167L8 Type I restriction enzyme subunit, putative n=11 Tax=Bacteria RepID=Q167L8_ROSDO Length = 782 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 94/412 (22%), Positives = 154/412 (37%), Gaps = 65/412 (15%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------------RG 50 R YQ AV+A L + + ++ L TG GK+ + ++A R Sbjct: 163 QPRYYQAAAVNAVLEALAQDEKRILLTLATGTGKTSIAFQIAWKLFQSRWNLSGAPTRRP 222 Query: 51 RVLVLAHVKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVA---- 101 R+L LA L Q + + A +A + + + V F Q+ Sbjct: 223 RILFLADRNILADQAYNSFSAFAPDALSRINPKEISKKGKMPRNASVFFTIFQTFMTENK 282 Query: 102 ------RNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFR 155 + F +I+DECHR G +ES ++ IL + LGLTATP R Sbjct: 283 SGEAEFNFREYEPDFFDFIIIDECHRGGAKDESSWRGILEYFAPAVQ----LGLTATPKR 338 Query: 156 LGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD--------MPVV 207 Y + F + +Y LR I G+LTP + + Sbjct: 339 KVNADTYTY-------------FGEPVYTYALREGIDDGFLTPFKVRQMASTIDTYVYDP 385 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKE 267 + + + ++E ++N ++ R I + M+ R+ ++F AT HA Sbjct: 386 EDEVVGGDVDPDHEYTEDEINAKIVIPAR-EQSRIHEFMDQINPRQKTLVFCATQNHAAA 444 Query: 268 IVGLLPA-------EDAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAP 317 + + +T + GA + + F+ L L+TG DA Sbjct: 445 VCDYINQIKDIEDPHYCERVTAN-DGALGEQHLREFQDNERSIPTILTTSQKLSTGVDAR 503 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVG 369 +V I ++RP +S+ ++QIVGRG R GK I D+ PE Sbjct: 504 NVRNIVLMRPIKSMVEFKQIVGRGTRTFEGKDFFTIYDFVKAYEHFNDPEWD 555 >UniRef50_A5UL17 Helicase n=3 Tax=Methanobrevibacter smithii RepID=A5UL17_METS3 Length = 956 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 154/384 (40%), Gaps = 41/384 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q +++ + + ++ A++V TG GK+ A + + L + H +++ Q Sbjct: 220 QVGFMESLRSLIQSGESKALLVSATGTGKTYASAFAVQDFNPKKFLFVVHREQIAKQAIN 279 Query: 68 KYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIG 123 Y+ + D K+ +F ++Q+++++ + EF +++DE H+ G Sbjct: 280 AYKNVFKNTKDFGLLTGNSKDYDSNFLFSTIQTLSKDDVYTKFKKDEFDYIVIDEVHKAG 339 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 YQ+I+ + LG+TA+P R IY+ H + Sbjct: 340 ---AYSYQKIMDYFEPEF----CLGMTASPERPDGIDIYELFDH------------NLAC 380 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ L P + ++ D + + N+ + +++ Sbjct: 381 EIRLKDALEEDLLCPFHYFGISDLEIDGETVD-------DSTEFNQLV--SDDRVNYLLE 431 Query: 244 Q--IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQ 299 + ++ R ++F + + A E+ A ++TGD R+ I Sbjct: 432 KSAYYGYSGERIKALVFCSRKKEANELSKAFNKRGHPAIVLTGDDSQQTREDAIYRLTND 491 Query: 300 R----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 Y+ V + G D P ++ + ++RPT+S ++ Q +GRGLR K +ILD Sbjct: 492 EAKNKLEYIFTVDIFNEGVDIPEINQVLLVRPTQSPIIFIQQLGRGLRKFKNKDYVVILD 551 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVP 379 + GN + + + +S + Sbjct: 552 FIGNYKNNFMIPIALSGDRSYDKD 575 >UniRef50_C5NW00 DNA repair helicase Rad25 n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NW00_9BACL Length = 937 Score = 312 bits (799), Expect = 3e-83, Method: Composition-based stats. Identities = 81/407 (19%), Positives = 157/407 (38%), Gaps = 41/407 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+ ++ R +++ TG GK+ A + R+L + H +++ Q Sbjct: 193 QRSFIEN-FEKLRNQDNKGLLISATGTGKTFAAAFAMKSIGAKRLLFIVHREQIARQALE 251 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVARN--LDAFQG-EFSLLIVDECHRIG 123 ++ G K K +F +VQ++++ +F F +I+DE HR G Sbjct: 252 TFKTIFGTSRSYGLLTGKEKNIEADFIFSTVQTMSKEDIFKSFNDSHFDEIIIDEVHRAG 311 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 D Y +++ + LG+TA+P R IY+ + + +Y Sbjct: 312 AD---SYLRLMDYFKPTF----YLGMTASPDRTDSFNIYELFNN------------NIVY 352 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ +++ L P + ++ D + S + + + HIIS Sbjct: 353 EVRLKEAMENSLLCPFHYFGISDLEVDGKVIDELS-------EFSNLVSN--ERVEHIIS 403 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIENFKAQ 299 +I + R ++F ++ + AK + + +TG+ R+ I A Sbjct: 404 KINYYGYSGDRVKGLVFCSSKQEAKVLSEEFNTRGYNTTSLTGEDSQERREHEISKLVAN 463 Query: 300 R---FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 Y+ V + G D P V+ + +LRPT+S ++ Q +GRGLR + K +I+D+ Sbjct: 464 DGDMLDYIFTVDIFNEGVDIPEVNQVIMLRPTQSFIIFIQQLGRGLRKSANKDFVVIIDF 523 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTL 403 N + + V S + + G T + Sbjct: 524 IANYKNNFLIPVALSGDNSYDKDTVRKFLSQGTRYIPGMSTIHFDEI 570 >UniRef50_A4WYD6 Transposase, IS4 family n=3 Tax=Rhodobacteraceae RepID=A4WYD6_RHOS5 Length = 956 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 95/403 (23%), Positives = 157/403 (38%), Gaps = 42/403 (10%) Query: 23 HKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAG 82 ++VL TG GK+ + A +VL +AH +E++ Q + ++ + EA Sbjct: 276 GHRAGLVVLATGLGKTWLAAFD-SRPFAQVLFVAHREEILTQAMSSFRRIRPEARFGRYD 334 Query: 83 LKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTK 139 K+ +++F S+Q++ R +L F + F ++VDE H Y+ +L H T Sbjct: 335 GTEKDDGAEILFASIQTLGRSNHLRRFAPDSFDYIVVDEFHHAS---AGSYRGLLDHFTP 391 Query: 140 VNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPP 199 LLGLTATP R + + +Y L I+ G L+P Sbjct: 392 ----RFLLGLTATPDRSDGADLLALCG------------DNLVYHCDLFEGIEAGLLSPF 435 Query: 200 ERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFA 259 L +P + D++++ +SN F L + + + Q + F Sbjct: 436 RYLGVPD-EVDYAQIPWRSN-QFDPEALEAA-LATEARARNALDQFHRH--RDGPAIGFC 490 Query: 260 ATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAP 317 ++ HA+ + A+ A + A R ++ L V + G D P Sbjct: 491 CSLRHAEFMAAFFQAQGLRAVAVHSGPGSAPRATSLDRLGRGEIDILFAVDMFNEGVDVP 550 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH----DLYAPEVGTPKG 373 ++ + +LRPTESV L+ Q +GRGLR GK ++DY GN L A P Sbjct: 551 NIGTVMMLRPTESVILWLQQLGRGLRRVEGK-LLRVIDYIGNHRVFLTKLRALLAAGPGD 609 Query: 374 KSDNVPVQVFC-------PACGFANTFWGKTTADGTLIEHFGR 409 +S ++ PAC L G Sbjct: 610 RSLAQRLEQAAAGTLALPPACSVTYDLRVIEILRDLLRPKSGM 652 >UniRef50_D2Q5U4 DNA/RNA helicase (DEAD/DEAH box family) n=7 Tax=Bifidobacterium RepID=D2Q5U4_9BIFI Length = 1050 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 45/394 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q EA+ ++ ++ A+I+ TG GK+ + A R + R+L +A ++++ + Sbjct: 243 QVEALMNLAQLRKQGESRAIIISATGTGKTYLSAFDVRQFKPKRMLYIAQQEQILKKAKE 302 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVAR---NLDAFQGEFSLLIVDECHRI 122 YQ + ++ KE K +F +VQ+++R + + +F +++DE H Sbjct: 303 SYQKVLGCPAKELGLFSGISKEHDRKYLFATVQTMSRPEVLVQFGKDDFDYILIDEVHHA 362 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 D Y++I+ + T +LG+TATP R I++ + + Sbjct: 363 AAD---SYKRIIDYFTPDF----MLGMTATPERTDGANIFELFGN------------NVA 403 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDF-------SRLQAQSNGLFSEADLNREL--KK 233 YE+ L+ ++ L P + + +++A DL+ L Sbjct: 404 YEIRLQRALEESMLCPFHYYGVHEYIQEAPNGRLLGKQIKASDWTEQERNDLSHWLEELT 463 Query: 234 QQRITPHIISQIMEF--AATRKGVMIFAATVEHAKEIVGLLPA---------EDAALITG 282 +II +I + A T ++F + E AK + L ITG Sbjct: 464 SPSRVHYIIDKIQLYGEAGTDVQGLVFCSRREEAKRLSALFNQQINQQAERPYHTKAITG 523 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 + AERD+ +E + Y+ V + G D PH++ I +LR T+S ++ Q +GRGL Sbjct: 524 EHSQAERDLAVEQLENGELDYIFTVDLFNEGVDIPHINQIVMLRQTQSSIIFTQQLGRGL 583 Query: 343 RLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 R A GK +++D+ GN + Y + D Sbjct: 584 RKASGKDSVVVIDFIGNYANNYLIPIALYGNTGD 617 >UniRef50_C6E151 Type III restriction protein res subunit n=3 Tax=Deltaproteobacteria RepID=C6E151_GEOSM Length = 1042 Score = 310 bits (795), Expect = 8e-83, Method: Composition-based stats. Identities = 91/446 (20%), Positives = 165/446 (36%), Gaps = 50/446 (11%) Query: 1 MIFTLRPY--QQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAEL------ARLARGR 51 + F LRP+ Q+ ++A H +++ TG GK+++ A A+ + R Sbjct: 304 IFFDLRPHPFQERILEALARERTSHDRWRNLVIAATGTGKTVIAAFDFKNFFEAKRRQAR 363 Query: 52 VLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVA-RNLDAF-- 107 +L +AH E++ + ++ + + + + ++ + +F SV +A R L Sbjct: 364 LLFIAHRLEILQKAQGTFRNVLRDQNFGELLVGEYQAVRLEHLFCSVGMLANRRLWEQVG 423 Query: 108 QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 G + +++DE H S Y+ I + LLGLTATP R+ G + + Sbjct: 424 SGFYDYIVIDEAHH---STASSYRPIFENFAPEI----LLGLTATPERMDGGNVAADFGN 476 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 E+ L ++ L P + S Q NG ++E+ L Sbjct: 477 RFAA------------EIRLPEALEEKLLCPFHYFGVADP-IAISGEQFWRNGKYNESAL 523 Query: 228 NRELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKEIVGLLPAEDAA--L 279 + I+ + + F T+ HA + Sbjct: 524 ENVYVMDNVRAKQRVDAIITALTRYEPDLSNVKGVGFCVTIRHAHFMAEQFSKRGIPSGA 583 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 L+E+ R +L V L+ G D P ++ + LRPTES++++ Q +G Sbjct: 584 FVSGVEDDRCSKLLEDLSTGRLTFLFTVDKLSEGVDIPLLNTVLFLRPTESLTVFLQQLG 643 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKS---DNVPVQVFCP------ACGFA 390 RGLR APGK ++D G H Y ++ ++ +V C Sbjct: 644 RGLRHAPGKDCLTVIDLVGQAHRRYRADIKLKALMPRHRYSIDREVEADFPHLPSGCSIQ 703 Query: 391 NTFWGKTTADGTLIEHFGRRCQGWFE 416 + + E+FGR + Sbjct: 704 LDRLSRKYILDNIRENFGRLAVQVTD 729 >UniRef50_C8WVJ5 Type III restriction protein res subunit n=4 Tax=Alicyclobacillus acidocaldarius RepID=C8WVJ5_ALIAD Length = 607 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 118/405 (29%), Positives = 175/405 (43%), Gaps = 43/405 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA--RLARGRVLVLAHVKE 60 LR YQ EAVDA + K V+V TGAGK+++ ++ A RL RG VL LAH E Sbjct: 12 LKLRDYQVEAVDAIRRY---PKPRPVLVAATGAGKTVISSQFAVERLERGPVLFLAHRDE 68 Query: 61 LVAQNHAKYQAL-------GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEF 111 L+ Q K+ + G E I + SVQ++++ L+ + Sbjct: 69 LLDQTLDKFSVVFDALAEKGREVKIGRIQGPDDDVEADFAVASVQTISQPERLERWMAAH 128 Query: 112 SL---LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 +I DECH + L L V LGLTATP+R K + Sbjct: 129 ETTPTVITDECHHATARTYMRIYHALGFLGSVPEGHVHLGLTATPYRTDKADL------- 181 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG-LFSEADL 227 + ++ Y + + +I G+L PP+ + + +V L+ + +G +S+A++ Sbjct: 182 ------RKVYDGVAYAIGIHDLIDMGWLVPPKSVKLEIV----EGLEGKDDGADWSDAEV 231 Query: 228 NRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTP 285 + + I++ A+ R + F A+VEHA + + + G P Sbjct: 232 EGAVDTPS-VNKQIVAAWQAQASDR-LTIAFCASVEHAYHLAEEFEKAGVPVAVVHGALP 289 Query: 286 GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA 345 ER ++ F R L N VLT GFD P V I + RPT S SLY Q VGRGLR+A Sbjct: 290 KEERRQTLDAFSDGNIRVLCNYGVLTEGFDRPEVSCIIMARPTLSHSLYVQCVGRGLRIA 349 Query: 346 PG--KTDCLILDYAGNP--HDLYAPEVGTPKGKSDNVPVQVFCPA 386 P K DCL+LD G H L + + + P Sbjct: 350 PHIFKQDCLVLDVVGVTDVHRLMTVDRLLAGEDKEESGEKREGPG 394 >UniRef50_Q0AZK4 Type I restriction-modification system R subunit (Endonuclease) n=4 Tax=Firmicutes RepID=Q0AZK4_SYNWW Length = 1115 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 85/437 (19%), Positives = 153/437 (35%), Gaps = 75/437 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 R YQ+EA+ A + +++V+ TG GK+ + L + L LA Sbjct: 344 RYYQKEAIRAVCENIETGHRKSLLVMATGTGKTRTASSLTDVLSRGGYITNTLFLADRTA 403 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG----------E 110 LV Q ++ + + + +++ ++VF + ++ +D+ + Sbjct: 404 LVRQAKNDFKTNLPDMSLCNLLINKEDKTARIVFSTYPTMLNAIDSAKNENGQRLFTPAH 463 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+IVDE HR +Y+ I + + L+GLTATP + Y F Sbjct: 464 FDLIIVDEAHR---SIFKKYRAIFEYFDSM-----LIGLTATPKQEVDRNTYDFFEMES- 514 Query: 171 RGDEKALFRDCIYELPLRYMIK-HGYLTPPERLDMPVVQYDF--------SRLQAQSNGL 221 Y + L P +++ + +A+ Sbjct: 515 --------GVPTYAYAYETAVDKDHVLVPYHNIEVRTRFLEEGITYDELSEEDKARYEED 566 Query: 222 FSEADLN----------RELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHA 265 F++ D E Q ++ +M +IFA +HA Sbjct: 567 FTDEDGEMPDFIPSPAVNEFIFNQCTVDMVLEDLMTKGIKVAGGDRLGKTIIFAQNKKHA 626 Query: 266 KEIVGLLP-------AEDAALITGDTPGAERDVLIENFK--AQRFRYLVNVAVLTTGFDA 316 + IV A + D + +I++FK + V+V +L TG D Sbjct: 627 EYIVERFNKLYPQYHGSFAKRVVCDDNYVQ--TIIDDFKIAEKEPHIAVSVDMLDTGIDV 684 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVG 369 P + + + S + Q++GRG RL KT LI DY GN + G Sbjct: 685 PELVNLVFFKRIRSKIKFWQMIGRGTRLCKNLFGDGQDKTHFLIFDYLGNFEFFRTNKDG 744 Query: 370 TPKGKSDNVPVQVFCPA 386 ++ ++ +F Sbjct: 745 VKGNETQSISEAIFAKR 761 >UniRef50_C9RRX7 Type I site-specific deoxyribonuclease n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRX7_FIBSS Length = 781 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 113/626 (18%), Positives = 214/626 (34%), Gaps = 106/626 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG------------R 51 + R YQ+ AV+ ++ R + ++ L TG GK+ + ++ R Sbjct: 151 SPRYYQEIAVNNVMDAISRKQDRVLLTLATGTGKTYIAFQICWKIFKAHWNVDGTERLPR 210 Query: 52 VLVLAHVKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVARNLD- 105 +L LA L Q + A A K + F Q++ +L+ Sbjct: 211 ILFLADRNILSNQALNDFGQFDENAMCRITPESIAKSKGVPKGPSIYFSIFQTMMTSLNG 270 Query: 106 ------AFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + F L+I+DECHR ++ES+++ IL + + LGLTATP + Sbjct: 271 KFVYENYPEDFFDLVIIDECHRGAANDESRWRDILDYFQR----AYHLGLTATPKKNENA 326 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD--------MPVVQYDF 211 Y++ F +Y L+ I+ G+LTP + + D Sbjct: 327 NTYEY-------------FGKPVYVYSLKQGIEDGFLTPYRVRISSSNIDNYIYDPEDDV 373 Query: 212 SRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGL 271 + N +++E D K + + + ++ + ++F AT HA + L Sbjct: 374 ESGEIDPNKIYTETDFYHGNIKIRERDEFRVEEFLKQIDPDEKTIVFGATQAHAAILRDL 433 Query: 272 LPAE-------DAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDL 321 + +T D + ++ F+ L L+TG DA +V Sbjct: 434 INQHSRKPNVNYCKRVTSDDGDK-GEADLKTFQDNEKLLPTILTTSQKLSTGVDAKNVRN 492 Query: 322 IAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 I ++RP ++ ++QI+GRG RL GK I D+ G + PE Sbjct: 493 IVLMRPVNNIIEFKQIIGRGTRLFDGKYFFTIYDFVGASKNFSDPEWDGE---------- 542 Query: 382 VFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAEN 441 P G D R+ + C C Sbjct: 543 ---PIIDTPEPPNGGDPDDDKGSSGGPRKPR--------------------PCKICGNLP 579 Query: 442 DI--AARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDE 499 A + + C + + + +L+ + ++ + ++L+ + + Sbjct: 580 CTCDAKTKEKRCIEIKLSANHVLRLQAQWQEKFMFDGELITLEQFIKILFGKIPEFFK-- 637 Query: 500 DGADVSERFRLQTPAQRTAF-----EQLFIRPHTRTPGIPLRWITA--ADILAQQALLRH 552 D D+ R P R A + F + R + D+L A + Sbjct: 638 DSQDLRA--RWSDPTTREALLQNLSDNGFSKERLRQVQALTQNEKCDLLDVLELIAYNKS 695 Query: 553 PDFVVARMKGQYWQVREKVFDYEGRF 578 P R++ + ++ ++ + + F Sbjct: 696 PMERAERVRLMHEEILNEISEKQVPF 721 >UniRef50_UPI00019764F2 DNA or RNA helicase of superfamily II n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019764F2 Length = 1061 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 93/408 (22%), Positives = 160/408 (39%), Gaps = 53/408 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q+EA+ + + + A+IV TG GK+ + A R R+L +A + ++ Sbjct: 252 QKEALASLKKLREQGEHRAIIVSATGTGKTYLSAFDVREYRPRRMLYIAQQQMILKAAMK 311 Query: 68 KYQALG--LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF----QGEFSLLIVDECHR 121 YQ + ++++ K+ + VF +VQ++ R +A EF ++VDE H Sbjct: 312 SYQKVLGCPQSELGLYTGTSKQQDRRYVFATVQTM-RQPEALAQFASDEFDYVLVDEVHH 370 Query: 122 IGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDC 181 G + YQ+++ H + +LG+TATP R I++ H + Sbjct: 371 AGAEG---YQRVIDHFRDAD---FMLGMTATPERTDGINIFELFGH------------NI 412 Query: 182 IYELPLRYMIKHGYLTPPERLDM-------PVVQYDFSRLQAQSNGLFSE-ADLNREL-- 231 YE+ L+ + L P + D RL E L E+ Sbjct: 413 AYEIRLQKALDENMLCPFHYYGVAEYLGSDEDADQDMHRLDVSQGLDAKESKQLKYEIGQ 472 Query: 232 KKQQRITPHIISQIMEFAATR--KGVMIFAATVEHAKEIVGLLPAE---------DAALI 280 ++ +II ++ E+ ++F + E A E+ L A + Sbjct: 473 LATEQRVRYIIDKLQEYGQFGIPVTGLVFCSRQEEAHELSRLFNEHWNQQAERPYRTAAV 532 Query: 281 TGDT------PGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 T +RD + YL V + G D P V+ I +LR TES ++ Sbjct: 533 TSKDVNGKPLSQEKRDEYVRRLTDGELDYLFTVDMFNEGVDIPAVNQIVMLRSTESSIIF 592 Query: 335 QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 Q +GRGLR P K +++D+ GN ++ Y V D + Sbjct: 593 TQQLGRGLRKFPYKDSVVVIDFIGNYNNNYLIPVALYGNTGDRDRARK 640 >UniRef50_B0JHV9 Type III restriction enzyme res subunit n=4 Tax=Chroococcales RepID=B0JHV9_MICAN Length = 1148 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 93/433 (21%), Positives = 154/433 (35%), Gaps = 74/433 (17%) Query: 6 RPYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 RPYQ+EA+ F +++V+ TG GK+ L L + RVL LA Sbjct: 353 RPYQKEAIRRITETFEEKCARKSLLVMATGTGKTRTAIALVELLKSANWVNRVLFLADRN 412 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ--------GEF 111 L+ Q + +Q + + + V+F + Q++ +D G F Sbjct: 413 ALLKQAYRAFQRHLPSVTVLHLTRSKDVTGANVLFSTYQTMLNAIDRMDAEGRIFGVGYF 472 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR +Y +I + + L+GLTATP Y+ Sbjct: 473 DLVIVDEAHR---SIYQKYGEIFDYFDAL-----LVGLTATPRSEIDRDTYRIFQLPQ-- 522 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV----VQYDFSRLQAQSNGLFSEA-- 225 + L ++ G+L PP+ + +P +S L Q + E Sbjct: 523 -------GVPTFAYELNDAVRDGHLVPPKGVTVPFKFLRTGVKYSELTPQERLDYEEKFR 575 Query: 226 ---------DLNRELKKQQRITPHIISQIMEFAATRK----------GVMIFAATVEHAK 266 +N + Q +E R +IFA HA+ Sbjct: 576 DEESGELPQAINAAAFNDWLFNIDTVDQALELLMQRGLKVNSGDRLGKTIIFARNHRHAQ 635 Query: 267 EIVGLLP-------AEDAALITGDTPGAERDVLIENF--KAQRFRYLVNVAVLTTGFDAP 317 I A +I A+ L+++F + V+V +L TG D P Sbjct: 636 CICDRFNSNYPHYKGHFAKIIDSHDNYAQ--SLLDDFSEANKEPILAVSVDMLDTGVDVP 693 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGT 370 V + +P S + Q++GRG RL KT+ L+ D GN T Sbjct: 694 EVVNLVFFKPVFSRVKFNQMIGRGTRLCQDLFGTGNHKTEFLVFDLCGNFEYFEQDIDET 753 Query: 371 PKGKSDNVPVQVF 383 + +++ ++ Sbjct: 754 SQKIPESLTSRLV 766 >UniRef50_A8PUJ3 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PUJ3_MALGO Length = 667 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 162/385 (42%), Gaps = 45/385 (11%) Query: 4 TLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLARGR------VLVLA 56 LRPYQQE VDA ++ R T + PTG+GK+ + EL R L+L Sbjct: 39 KLRPYQQECVDACIDALERKHLTRIGVSAPTGSGKTTMFLELVSRIFSREANTSHALILV 98 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRK--ESHGKVVFGSVQSV--ARNLDAFQGE-F 111 + L Q + + + + R + +VQ++ + L + F Sbjct: 99 NGITLAQQAAERAKRMFPHMTVDMDQGARHVASGEADITVATVQTLRQPKRLAKYNPHKF 158 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHL-----------RLLGLTATPFRLGKGW 160 +IVDE H Y +L+H K ++G +AT R Sbjct: 159 KCVIVDEAHH---STSPSYLSVLSHFHKAIVPSNKHGSTTDATTPIIGFSATFTRHDGVA 215 Query: 161 IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG 220 + +F + ++ MI +L P + +D S++ S+ Sbjct: 216 LGL-------------VFEEIVFHKDFLDMIDEQWLCPVR-FTLIRADFDLSKVSTTSS- 260 Query: 221 LFSEADLNRELKKQQRITPHIISQIMEFAA-TRKGVMIFAATVEHAKEIVGLLPAEDAAL 279 + + L + + + ++ M+ A TR+ ++FA V H +V Sbjct: 261 DYVVSSLAHVVNRPD-VNELVVRSWMDLAGATRQSTLVFAVDVAHVHALVKEFQVRGIDA 319 Query: 280 --ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 I ER+ L+ +F+ F L+N A+LT G D P +D + ++RPT+S +L+ Q+ Sbjct: 320 RGIHASMRLTERESLLASFQRADFPVLINCAILTEGADMPGIDCVLLMRPTKSRNLFAQM 379 Query: 338 VGRGLRLAPGKTDCLILDYAGNPHD 362 +GRG+R + GK+DCLILD GN H+ Sbjct: 380 IGRGMRKSAGKSDCLILDVVGNAHN 404 >UniRef50_B9CV28 Phage deah-family helicase n=1 Tax=Staphylococcus capitis SK14 RepID=B9CV28_STACP Length = 445 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 88/403 (21%), Positives = 168/403 (41%), Gaps = 51/403 (12%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 + LR YQ+E ++ + ++ P G+GK++ ++EL R A + RVL + H Sbjct: 1 MIPLRDYQEELLNGLYKSIANNNKNIMVQSPAGSGKTVTMSELTRRANNKKNRVLCIVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-FQGEFSLLIVD 117 +E+V Q +A + D G VQ++A + + ++I+D Sbjct: 61 EEIVNQIKNTMEANDVNWDYCE-------------VGMVQTIANRIKKNLIQKPDIIIID 107 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + YQ+I++ P ++G TATP+RL K Sbjct: 108 EAHHALS---NTYQKIISSF----PDTYIIGFTATPYRLNGQ-------------GFKES 147 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F+D + ++++I+ L P + + ++ ++ + + G FS+ + ++I Sbjct: 148 FQDIVLGKSVKWLIEKKRLAPYKYFSIDLINHEKLK---KQRGEFSQKSIEEAF--NKKI 202 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIEN 295 ++ ++A +++A VE +K + +A + G+ ER +++ Sbjct: 203 YGDVLKNYEKYAKGL-KTIVYAYNVESSKRVAEQFKNKGYNAYHLDGNAKTHERLEVVQK 261 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ L N + GFD P + +LRPTES+SL+ Q R +R K +I+D Sbjct: 262 FRDGEIDILTNAELFGEGFDIPDCHCVILLRPTESLSLFIQQTMRAMRYQLNKE-AIIID 320 Query: 356 YAGNPHDLYAPEVGTP-----KGKSDNVPVQVFCPACGFANTF 393 N P+ +GK ++ CG + F Sbjct: 321 LVNNWSTHQLPDSDRDWVAYFEGKPPREKSEIPAKVCGAEDCF 363 >UniRef50_D2RKS9 Type III restriction protein res subunit n=2 Tax=Acidaminococcus RepID=D2RKS9_ACIFE Length = 1061 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 149/386 (38%), Gaps = 44/386 (11%) Query: 1 MIFTLRPYQQEAVDAT-LNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------RGRVL 53 PYQQ +DA + R + +IV TG GK+ + A R R+L Sbjct: 319 FTIRPYPYQQVILDALDVERKERGRWHNLIVAATGTGKTAISAFDYRRFAASRPEGARLL 378 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAGL-KRKESHGKVVFGSVQS-----VARNLDAF 107 +AH KE++ Q+ + ++ + + + + + H VF S+Q+ + +L+ Sbjct: 379 FIAHRKEILEQSLSCFRQVLKDPNFGELAVAGSRPEHLDQVFMSIQTCNSLSLWDHLE-- 436 Query: 108 QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 + ++IVDE H YQ +L LLGLTATP R+ I + Sbjct: 437 PDFYDMIIVDEFHH---SAAQSYQNLLHWFQPKI----LLGLTATPERMDGKDILHWFD- 488 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADL 227 E+ L I+ L P + D S ++ +NG + L Sbjct: 489 -----------DHIAAEIRLPAAIERRLLCPFHYFGVADT-VDLSHVKW-TNGHYDTGAL 535 Query: 228 NRELKKQQR----ITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDAA--L 279 + I+ + + A + + F + +HA + Sbjct: 536 TNLYVMESHTANNRAQAILQAVERYTADWQDIHGVGFCVSQDHAHFMADYFNDNGIPSLA 595 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 + + +R + ++ +L V + G D P ++ I LRPT S++++ Q +G Sbjct: 596 LNAHSSEEDRQSARQKLESGALTFLFVVDLFNEGVDIPCINTILFLRPTNSMTVFLQQLG 655 Query: 340 RGLRLAPGKTDCLILDYAGNPHDLYA 365 RGLRL GK +LD+ + Y Sbjct: 656 RGLRLDQGKDCLTVLDFVAQANRKYD 681 >UniRef50_D0SUQ0 Predicted protein n=5 Tax=Moraxellaceae RepID=D0SUQ0_ACILW Length = 1147 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 95/433 (21%), Positives = 158/433 (36%), Gaps = 76/433 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 R YQ A+ A L F+R + ++++ TG GK+ L + +VL LA Sbjct: 375 RYYQTRAIKAMLAAFQRKERAGLLIMATGTGKTRTAIALVDVLMKANVVQKVLFLADRTS 434 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---------F 111 LV Q ++A ++ ++ K +G+V + Q++ +D + F Sbjct: 435 LVVQATNAFKANLPDSAPVNL-VESKTQNGRVYLSTYQTMMGLIDEMNADGTRKYGTGMF 493 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR ++ +I + + L+GLTATP Y Sbjct: 494 DLIIVDEAHR---SVYQKFGEIFKYFDSL-----LVGLTATPRDEVDRDTYALFGLES-- 543 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV----VQYDFSRLQAQSNGLFSEAD- 226 L I GYL PP+ +P+ + L + + E D Sbjct: 544 -------GVPTDYYDLNQAIADGYLVPPKAYSVPLKFMREGVKYDELSEEEKLHWDELDW 596 Query: 227 -------------LNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAKE 267 +N+EL + + +ME +IFA HA Sbjct: 597 DGGDAPDEVTASKINKELFNTGTVDKM-LQHLMENGIKVEGGDMLGKTIIFAVNQNHANF 655 Query: 268 IVGLLP-------AEDAALITGDTPGAERDVLIENFKAQRF---RYLVNVAVLTTGFDAP 317 I + A +IT T A+ LI++F + + ++V +L TG D P Sbjct: 656 IAERFDKNYPHYDGKFARVITHSTKYAQ--SLIDSFSKKDLADPQIAISVDMLDTGIDVP 713 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPEVGT 370 V + + S + Q++GRG RL K + I DY N G Sbjct: 714 EVVNLVFFKAVRSKVKFTQMIGRGTRLCKDLFAPEMDKKEFYIFDYCSNFEYFNENPDGA 773 Query: 371 PKGKSDNVPVQVF 383 P ++ + ++F Sbjct: 774 PISTTEPLGQRLF 786 >UniRef50_Q9T1H9 Putative DEAH-family helicase n=1 Tax=Lactobacillus phage phiadh RepID=Q9T1H9_9CAUD Length = 455 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 107/519 (20%), Positives = 191/519 (36%), Gaps = 82/519 (15%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAH 57 M +R YQ++ +D + +I P G+GKS+ +AELA+ RVL + H Sbjct: 1 MDMPIRSYQKKLIDDLRLSLKHGHKNVLIQSPAGSGKSITMAELAKRITSNGERVLFVVH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 +ELV Q + + G+ ++ VQ+ +R L+ + ++VD Sbjct: 61 RRELVKQIKNTFSSWGVNMNLCEIY-------------MVQTASRRLEKLMTP-NYILVD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H Y++I H + +LG TATP RL K + Sbjct: 107 EAHH---SLAKTYKKINNHF----KNAHILGFTATPVRLSGK-------------GFKDI 146 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 + D + + ++I++ YL P + + D ++L+ S G ++ + + + Sbjct: 147 YDDLVLGPKISWLIENHYLAPYTYYSVNL--IDQTKLKKSSTGDYTHKSIENA--GKNIV 202 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPGAERDVLIEN 295 +I +FA +I++ +V ++I + + G T +RD +++ Sbjct: 203 YGDVIQSYHKFANNT-KAIIYSYSVHSCQQIAKEFNKNNIPAKEVDGKTKKEDRDKAMQD 261 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + + LVN + G D P + + +LRPT+S+SL+ Q R +R P K +I+D Sbjct: 262 FRDGKIKILVNAELYGEGVDVPDCETVIMLRPTQSLSLFIQQSMRCMRYQPDKQ-AIIID 320 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWF 415 N P++ T + +R G Sbjct: 321 QVANYTRFGLPDMDR-------------------VWTLEDR--------AKHPQREGG-- 351 Query: 416 EDDDGHREQCDFRF-----RFKNCPQCNAENDIAARRCRECDT-VLVDPD-DMLKAALRL 468 D + C F + CP C + R+ E L + D + R Sbjct: 352 -SDGIAIKTCPNCFGVIMASYHKCPLCGYSFEAEFRKLAEDKRAELEKINLDAKEMRERK 410 Query: 469 KDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSER 507 K L S E + K T A + Sbjct: 411 KKEQELLLRDPSTFTTFKEFAIYGKATGKKPGWAWHRAK 449 >UniRef50_A0L703 Type III restriction enzyme, res subunit n=13 Tax=Proteobacteria RepID=A0L703_MAGSM Length = 560 Score = 307 bits (787), Expect = 7e-82, Method: Composition-based stats. Identities = 110/411 (26%), Positives = 180/411 (43%), Gaps = 35/411 (8%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA----RLARGRVLVLAHV 58 LRP Q++ V+ ++ H + V PTGAGK+++++ + R G+ VLAH Sbjct: 1 MRLRPRQKQFVERSVAALHEHG-NTLGVAPTGAGKTVMLSAVIGNMLRNDGGKACVLAHR 59 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD-AFQGEFSLLIVD 117 EL QN K+ + + K G+ F V ++AR + E LL++D Sbjct: 60 DELTRQNVMKFTKVNPGFSTSVVDARGKSWRGRATFAMVPTLARQKNLDTMPELGLLVID 119 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y++I+ NP + GLTATP R K + + + Sbjct: 120 EAHHAA---ANSYRRIIDTALDRNPDCCIYGLTATPNRGDKKAL-------------RPI 163 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 F + ++ L +I G L P + V D + ++ F A++++ + + + Sbjct: 164 FSNVADQVRLGELITAGNLVKPRTFVVDVGTQDALKSVRKTADDFDMAEVSQ-IMNKAPV 222 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIEN 295 T +I E A TR ++F +TV+HA+ + D A ++ G+ AER + Sbjct: 223 TEAVIKHWKEKAGTR-KTIVFCSTVDHAQNVTDAFNNADVEAVMVHGELTTAERKAALAR 281 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR-----LAPG--K 348 F+ +VNVAVLT G+D P + +LRP+ S Q+VGRGLR L PG K Sbjct: 282 FEKGSAMVVVNVAVLTEGYDHPPTSCVVLLRPSSYKSTMIQMVGRGLRTVDPALFPGLVK 341 Query: 349 TDCLILDYAGNPHDLY--APEVGTPKGKSDNVPVQVFCPACGFANTFWGKT 397 TDC++LD+ + +V + CP C + Sbjct: 342 TDCIVLDFGTSSILHGSLEQDVNLDGKEIQGAAPTKECPECQAIVPLAVRE 392 >UniRef50_Q043T1 Type I site-specific restriction-modification system, R (Restriction) subunit related helicase n=14 Tax=Firmicutes RepID=Q043T1_LACGA Length = 1113 Score = 307 bits (787), Expect = 8e-82, Method: Composition-based stats. Identities = 110/557 (19%), Positives = 183/557 (32%), Gaps = 93/557 (16%) Query: 6 RPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQ+ A+ A F + ++ A++V+ TG+GK+ L ++ VL LA Sbjct: 340 RYYQKAAIQAVCESFSKENRRKALLVMATGSGKTRTAVGLVKVLLNAGWIKHVLFLADRD 399 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD----------AFQG 109 LV Q + L + + + + VF + ++ +D G Sbjct: 400 ALVTQAKRSFVNLLPDLSSTNLVEDKSNYNARCVFSTYATMMNVIDTATDDDKKKLYTAG 459 Query: 110 EFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGM 169 F L+IVDE HR ++Y+ I T+ L+GLTATP Y Sbjct: 460 HFDLIIVDEAHR---SIYNKYRNIFTYFDA-----PLVGLTATPKDDIDKNTYSIFNLED 511 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----QYDFSRLQAQSNGLFSE- 224 Y L + GYL P + ++ + ++ L Q + E Sbjct: 512 ---------GVPTYGYDLAQAVDDGYLVPYKSIETHLKFMENGINYDDLSTQEKEEYEET 562 Query: 225 --------------ADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEH 264 LN+ L + I +++ +M ++ +IFA H Sbjct: 563 FTDEDGDLPKKIDSGKLNKWLFNKDTI-RKVLNILMNQGLKIDYGEKIGKTIIFAKNHRH 621 Query: 265 AKEIVGLLPAED------------AALITGDTPGAERDVLIENFKAQR--FRYLVNVAVL 310 A+EI+ + E A +I T ++ I+ F + V+V +L Sbjct: 622 AEEILKVFNEEYPQFSRNTHGQPYATVIDNYTNYSQ--SAIDEFSDPDKLPQIAVSVDML 679 Query: 311 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP------GKTDCLILDYAGNPHDLY 364 TG D P + + S + + Q++GRG RL P K + I D+ N H + Sbjct: 680 DTGIDVPECLNLVFFKKVMSKAKFFQMIGRGTRLCPHLLDGKDKQEFYIFDFCDNFH-FF 738 Query: 365 APEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTL----IEHFGRRCQGWFEDDDG 420 G G + + +F + C+ E + Sbjct: 739 RMGKGHEAGVQETLQSALFNLKMELVRKLQEEPYQTDDFNQYRKTLVEDLCKKVKELNRN 798 Query: 421 HREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVD---PDDMLKAALRLKDALVLRCS 477 + Q N++ L PD+ ALR Sbjct: 799 NFAVKQHIAYVDKFSQIENYNNLTYEDIVNTKKELSPLILPDNDEPNALRFDAL----VY 854 Query: 478 GMSLQHGHDEKGEWLKI 494 M L E LKI Sbjct: 855 KMELAKMSQESYGRLKI 871 >UniRef50_C0VSE4 Type I site-specific deoxyribonuclease n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSE4_9CORY Length = 1195 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 167/450 (37%), Gaps = 81/450 (18%) Query: 6 RPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 R YQ E + F + A++V+ TG GK+ V LA+L RG RVL LA K Sbjct: 420 RDYQLEMIRNVTEAFDSEGRRRALLVMATGTGKTRVAMALAKLLRGAQWVGRVLFLADRK 479 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD-------AFQG-EF 111 LVAQ ++ E L+ + G+V F + Q++ + F+ +F Sbjct: 480 ALVAQACDAFKISYPECAPVNL-LEDADEVGEVYFSTYQTMMGLISDDGTSEAKFRPFDF 538 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DE HR ++++IL + ++GLTATP + + Sbjct: 539 DLIIIDEAHR---SIYYRFRRILEYFDS-----YVVGLTATPKADIHHDTFALFHIDGR- 589 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV-----------------VQYDFSRL 214 + L IK GYL PP V +D Sbjct: 590 --------EPTGNYSLEAAIKDGYLVPPVPFKQDSLFLRAGVSYDDLSPEQKVAWDNQDW 641 Query: 215 QAQSNGL-------FSEADLNRELKKQQRITPHIISQIMEFAATRKG-----VMIFAATV 262 +G S ++NR L + I ++ ++E G +IFA T Sbjct: 642 GTDEDGDALPPPDGVSPGEINRILYNRDTI-RKVVGNLIECGHKVDGDRLGETIIFARTQ 700 Query: 263 EHAKEIVGLLPAE-------DAALITGDTPGAERDVLIENFK--AQRFRYLVNVAVLTTG 313 HA I+ + AA+IT T AE I+ FK R ++V +L TG Sbjct: 701 HHADLILEEINKHFPAFGGDGAAVITHSTRYAE--AAIKRFKKIDGDLRIAISVDMLDTG 758 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDL-YA 365 D P V + +P S + + Q+VGRG RL P K + I DY GN Sbjct: 759 IDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLCPNLFGPGRDKENFYIFDYCGNVEMFSGK 818 Query: 366 PEVGTPKGKSDNVPVQVFCPACGFANTFWG 395 P + + ++F Sbjct: 819 PVTDPAGTRQATLSERLFVARAQLIRLLDE 848 >UniRef50_B1VE55 Putative helicase n=2 Tax=Corynebacterium RepID=B1VE55_CORU7 Length = 969 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 159/392 (40%), Gaps = 47/392 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-LARGRVLVLAHVKELVAQNHA 67 Q EA++ + + A+++ TG GK+++ A R + L L H ++++ + Sbjct: 220 QVEALENINRLRSQGEQRALVISATGTGKTILGALAVRSANPKKFLFLVHTEQILDRAML 279 Query: 68 KYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 +Q + + +E + F ++ S++R NL + F +IVDE HR Sbjct: 280 DFQKVLGAGPEEFGKFAGSSRELGKRYTFATIASLSRPENLYKLSQDYFDFIIVDEVHRA 339 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 E + Y +I+ HL LLGLTATP R I++ +H + Sbjct: 340 ---EAATYVRIIEHLKPDF----LLGLTATPERTDGKSIFERFHH------------NVA 380 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L+ ++ L P + + + + L R HI+ Sbjct: 381 YEIRLQKALEEKMLVPFNYYGVTDYTDNEGNVV-----DDEFSSLARLCA--PERVKHIV 433 Query: 243 SQIMEFA-ATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDT-----------PGAERD 290 + + + A +IF + VE A+E+ LL E + G T AER Sbjct: 434 NMLNTYGFAGDVKGLIFCSRVEEAEELSRLLNKEK---VYGRTLRTLALSSQYFTVAERQ 490 Query: 291 VLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD 350 +E + YL+ V + G D V+ I +LRPTES ++ Q +GRGLR GK Sbjct: 491 KAVERLENGELDYLLTVDIFNEGIDIRSVNQIVMLRPTESSIIFTQQIGRGLRKCEGKDH 550 Query: 351 CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQV 382 ++D+ GN + + +S Sbjct: 551 LRVIDFIGNYKKNFLIPIALFGERSRRKDKIR 582 >UniRef50_Q3V5F4 Gp41, helicase n=1 Tax=Corynebacterium phage BFK20 RepID=Q3V5F4_9CAUD Length = 537 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 114/370 (30%), Positives = 170/370 (45%), Gaps = 38/370 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGK-SLVI--AELARLARGRVLVLAHVKE 60 LR YQ EAV+A L + +VLPTG GK +++ AE+A A RV++LAH +E Sbjct: 7 ELRAYQTEAVNAVLGEWVDG-KRTCVVLPTGTGKSTVIAKLAEIAYKAGQRVILLAHRRE 65 Query: 61 LVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVARNLD-AFQGEFSLLIV 116 L+ Q + + + DI +R + +V S Q++ GE ++++V Sbjct: 66 LLDQMAQSIRMVAPQIPTDDIGFVQAERDQPERPIVCASFQTLMSASRLQAVGERTVVLV 125 Query: 117 DECHRIGDDEESQYQQILT--HLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 DE H S Y +IL+ + G TAT R G Sbjct: 126 DEVHH---SAASTYAEILSAPNFDGAFKA----GFTATLQRADGG--------------L 164 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 + +E LR+ + G+L PP+ + + D + ++ + NG ++ DL+ + Sbjct: 165 ADYWDSIAFERDLRWALDEGFLVPPQGKTVVIPGLDTTNIKLR-NGDYAAGDLSEVMMSS 223 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA--ALITGDTPGAERDVL 292 + I A R+ ++IF A VEH + + L A AL+ G T ER L Sbjct: 224 ---VDSTVEAIHTHAPDRR-MLIFGAGVEHCQALSDTLSATGIHTALVVGSTSSEERTEL 279 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 E F A R + LV V VLT G D P D + + RPT S L+ Q+VGR LRL K D L Sbjct: 280 FEEFTAGRVQALVTVQVLTEGTDLPACDCVVLARPTRSAVLFTQMVGRALRLHQDKNDAL 339 Query: 353 ILDYAGNPHD 362 +LD AG+ D Sbjct: 340 VLDLAGSTRD 349 >UniRef50_A0Q726 Type I restriction-modification system, subunit R (Restriction) n=25 Tax=Proteobacteria RepID=A0Q726_FRATN Length = 782 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 99/463 (21%), Positives = 169/463 (36%), Gaps = 78/463 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------------RG 50 T R YQ+ AV T++ + ++ L TG GK+ + ++A + Sbjct: 149 TPRYYQKIAVQKTIDAISSGQDRILLTLATGTGKTYIAFQIAYRLLEARWRKNDIGNKKP 208 Query: 51 RVLVLAHVKELVAQNHAKYQAL-----GLEADIFAAGLKRKESHGKVVFGSVQ------- 98 R+L LA L+ Q ++ + ++ + + G V F Q Sbjct: 209 RILYLADRNILIDQAINEFNPIENDCKRIQGKLIKKNGGKVPLSGNVFFAIYQAVAENKN 268 Query: 99 -----------SVARNLDAFQ-GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRL 146 S+ + F L+I+DECHR +++S ++ I+ + + Sbjct: 269 RQYLATDSEDDSLTAYYKQYPADFFDLIIIDECHRGSANDDSSWRDIIEYFSSAVH---- 324 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV 206 LGLTATP R G Y + F + IYE L+ I G+LTP + + Sbjct: 325 LGLTATPKRDVNGDTYDY-------------FGEPIYEYSLKDGINDGFLTPYKVKRITT 371 Query: 207 VQYDFSRLQAQS------NGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAA 260 ++ S N ++S +D + + Q+ I I++ ++F Sbjct: 372 NIDEYRPNTHDSVDGDLPNKVYSISDWEKTI-TSQQRHELIAKTILDNINKMDKTIVFCK 430 Query: 261 TVEHAKEIV---GLLPA----EDAALITGDTPGAERDVLIENFKAQRFRY---LVNVAVL 310 HA E+ + +T + RD +E F+ L + +L Sbjct: 431 NQPHALELKLAIDRFKKVKTPDYCVRVTSEEGQIGRD-YLEQFQDNDKDIPVILTSSKML 489 Query: 311 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGT 370 TTG DA +V I + P ES+ ++QI+GRG R GK ILD+ Y + Sbjct: 490 TTGVDAKNVRNIVLTAPIESMIEFKQIIGRGTRTFEGKDFFTILDFVKASDKFYDKDWDG 549 Query: 371 -----PKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 K+D P + + D +H Sbjct: 550 VADVVTDVKADGKPKEDT-KEIKEIDPIENLKEKDDEPKKHEP 591 >UniRef50_C4R463 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R463_PICPG Length = 682 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 164/396 (41%), Gaps = 42/396 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA------RLARGRVLVLAHV 58 LRPYQ++ +++ + R +T + L TG GK+++ + L + + L+L H Sbjct: 60 LRPYQKDCIESIMKVIRGGETRLAVSLATGGGKTVIFSNLLNEIPSNKYNGQKTLILVHR 119 Query: 59 KELVAQNHAKYQALGLEADI---FAAGLKRKESHGKVVFGSVQSVARN-------LDAFQ 108 KEL Q + I A + VV SV ++ARN D Sbjct: 120 KELADQAARTIKRFFPHMKIEIDMAGLRPTHDDDVDVVVASVPTLARNNSKNPRLFDYDP 179 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHL----RLLGLTATPFRLGKGWIYQF 164 EF +I+DECH D Y +IL + ++ ++G +AT R + + Sbjct: 180 NEFKAIIIDECHHAISD---SYIKILQYFNALSKDSSDGIIVVGFSATLKRHDAQPLDK- 235 Query: 165 HYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSE 224 +F YE L M+K GYL+ + + ++ G + Sbjct: 236 ------------VFNTIAYEKDLISMVKEGYLSELSITKVEGA-FSLDDVKLDKTGDYQL 282 Query: 225 ADLNRELKKQQRITPHIISQIMEFAA--TRKGVMIFAATVEHAKEIVGLL--PAEDAALI 280 L + + ++ +E K + F +H +++ L A + Sbjct: 283 QSLESSV-NTAAVAELVLKTYLERKKVLGLKSSLFFCVNKQHVQDLCELFCANGIKAGFV 341 Query: 281 TGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 +G+TP ER+ +I+NF + L+N V T G D P++D I +LRPT+S L Q++GR Sbjct: 342 SGNTPLLEREQIIKNFIDGKLNVLMNCNVFTEGTDIPNIDSIFLLRPTKSRPLLSQMIGR 401 Query: 341 GLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 GLRL GKT C + D+ G H + Sbjct: 402 GLRLHSGKTKCYVTDFVGTTHSGINVDATLEGITKR 437 >UniRef50_C2CT05 Type I site-specific deoxyribonuclease n=3 Tax=Corynebacterium RepID=C2CT05_CORST Length = 1212 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 105/451 (23%), Positives = 167/451 (37%), Gaps = 81/451 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTP-AVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQ EA+ A + A++V+ TG GK+ V ARL R G+VL LA Sbjct: 430 RTYQLEAIRAVTETLEARRRRQALLVMATGTGKTRVAVATARLLRQAGWVGKVLFLADRT 489 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG--------EF 111 LV Q H + ++ E+ +K E G V + ++ + +F Sbjct: 490 ALVNQAHKAFVSMYAESTPVNL-IKNPEQVGDVYVTTYNTMMNLIGDDGDTPAKFGPFDF 548 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR +++++IL + ++GLTATP Y Sbjct: 549 DLIIVDEAHR---SVYNRFKRILEYFDA-----YVVGLTATPKSEIDHDTYALFEMEDKT 600 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERL------------------------DMPVV 207 +E L + G L P + D Sbjct: 601 ---------PSFEYSLDEAVADGNLVPFKTARQDSLFLRRGMSYDELSPEEQLAWDTSDW 651 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFA-----ATRKGVMIFAATV 262 D + G S A++NR L + I ++ ++E +IFA T Sbjct: 652 GTDEDGGRLDPPGQVSSAEINRYLFNKDTI-RKVLKTVVENGIRVGGDQLGKTIIFARTQ 710 Query: 263 EHAKEIVGLLPAE-------DAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVLTTG 313 HA+ I + A A++IT T A+ +++F ++V +L TG Sbjct: 711 RHAELIKQVFDATFPEYSRTGASVITTHTKYAQ--SALDDFADPDGDVNIAISVDMLDTG 768 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAP 366 D P V + +P S + + Q+VGRG RL P KT LI D+ GN + + Sbjct: 769 VDVPEVVNLVFFKPVYSPTKFWQMVGRGTRLRPDLFGPGMDKTHFLIFDFCGNVDEFFKG 828 Query: 367 EVGTP-KGKSDNVPVQVFCPACGFANTFWGK 396 E G+ ++ ++F G Sbjct: 829 EARESATGRPRSLSEKLFDARVGLLAQLDKH 859 >UniRef50_Q6VSX2 Putative helicase n=3 Tax=Vibrio phage phi16 RepID=Q6VSX2_9CAUD Length = 718 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 113/530 (21%), Positives = 198/530 (37%), Gaps = 87/530 (16%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKEL 61 +F LR YQQ A + + + ++ + VLPTGAGK+++ +++ G + H +E+ Sbjct: 1 MFKLRDYQQLAYNRIMAAWEKY-RSVLAVLPTGAGKTVIFSKIIHDHTGAAAAIVHRREI 59 Query: 62 VAQNHAKYQALGLEADIF---------------AAGLKRKESHGKVVFGSVQSVARN--- 103 VAQ + G++ + G + + SVQ++ Sbjct: 60 VAQISLSLASFGVKHRVIAPAKTLKTIRKKHFKKYGKSFIDPNAPCGVVSVQTLTSKSTL 119 Query: 104 ----LDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKG 159 + + + +L + DE H + Q I V + +LL +TATP R Sbjct: 120 NNAAIMRWVNQVTLGVYDEGHHYVE------QGIWAKGVHVFENAKLLFVTATPERAD-- 171 Query: 160 WIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSN 219 + E I ++I++G+L+ P D L N Sbjct: 172 -------GVGLGKGEGGFAEVMIEGPTTHWLIENGFLSKF-VYRAPQTDIDLRDLATGKN 223 Query: 220 GLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--A 277 G F+ L + + I ++ ++ ++ ++FA VE A+++ A Sbjct: 224 GDFNAKALKARVV-ESHIVGDVVQHYRKWGENKR-AIVFATDVETAEQMAEEFRRAGYTA 281 Query: 278 ALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQI 337 A ++G+T ERD L+ F+ + LVNV + GFD P V+ + + RPT+S++ + Q+ Sbjct: 282 ASVSGETEQGERDHLLAQFEEGAIQVLVNVDLFDEGFDVPAVECVILARPTQSLAKFLQM 341 Query: 338 VGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKT 397 VGR LR+ GK +I+D N P + G+ Sbjct: 342 VGRALRIMEGKEYAIIIDPVRNWERHGPPTAVR-------------------NWSLMGRE 382 Query: 398 TADGTLIEHFGRRCQGWFEDDDGHREQCDFRF-----RFKNCPQCNAENDIAARRCR-EC 451 G+ D ++ CD +K CP C N+IA R + Sbjct: 383 KGQGSG-------------GDTIPQKTCDACTVPYEAYYKACPYCGNVNEIADRSAPDKV 429 Query: 452 DTVLVDPDDMLKAALRLKDALV------LRCSGMSLQHGHDEKGEWLKIT 495 D LV+ D AL + + +G L+ Sbjct: 430 DGDLVELDLDAWNALFAEIERAKMSDDDYELDMIKRGVPQVGRGPELRRH 479 >UniRef50_Q2NIB5 Predicted helicase n=2 Tax=Methanosphaera stadtmanae DSM 3091 RepID=Q2NIB5_METST Length = 937 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 79/431 (18%), Positives = 155/431 (35%), Gaps = 50/431 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLARGRVLVLAHVKELVAQNHA 67 Q+ + ++ +++ TG GK+ L + ++L L H +++ Q Sbjct: 198 QKSFIKNLRKSLAKNDKKGLLISATGTGKTFASAFALKEINPKKILFLVHREQIAKQAMK 257 Query: 68 KYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA---FQGEFSLLIVDECHRIGD 124 Y + E + +K+ +F +VQ +++ + + F +++DE HR G Sbjct: 258 SYGKIFHEKTLGILSGNKKDYSVDFLFSTVQMMSKKENYERYNRDYFDFIVIDEVHRAGS 317 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 YQ+I+ + + LG+TATP R + IY H + IYE Sbjct: 318 V---SYQKIMNYFNPIF----YLGMTATPDRSDEFDIYSLFNH------------NIIYE 358 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + L+ ++ L + D + + + +II Sbjct: 359 IRLKNALEEDMLCSFNYFGITDNAIDVNDM-------------------SKTRIDNIIEN 399 Query: 245 IMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIENFKAQR 300 I + +R +IF + +AK + ++G+ ER I+ Sbjct: 400 IEYYGYSGSRVKGLIFCNNIHNAKILSKEFNNRGYRTLSLSGNNTQKERKDTIDRLVNDD 459 Query: 301 ----FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 Y++ V + G D V+ I +LR TES ++ Q +GRGLR K ++LD+ Sbjct: 460 RCDNLDYIITVDIFNEGVDIKEVNQIVMLRETESSIIFIQQLGRGLRKYSNKEFVVVLDF 519 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN + + V + N T + E + Sbjct: 520 IGNYKNNFLIPVALSGDTTYNKDNIRKFMINRNNLLVGSSTVHFDRISEKRIYDSINRAK 579 Query: 417 DDDGHREQCDF 427 ++ + + ++ Sbjct: 580 LNNLNFIRNEY 590 >UniRef50_C7P6A6 Type I site-specific deoxyribonuclease n=1 Tax=Methanocaldococcus fervens AG86 RepID=C7P6A6_METFA Length = 816 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 153/416 (36%), Gaps = 62/416 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHV 58 LR YQ+ A+ + + + ++ + TG GK+ ++ RVL L Sbjct: 156 KLRSYQETAIKRVIEAMLKGQKRILLTMATGTGKTFTSFQIVWKLIKSGFISRVLFLTDR 215 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEF-SLLI 115 L Q + Y+ + F + + ++ F + Q++ +F L+I Sbjct: 216 IFLRDQAYEAYEPF--KGARFKIESGKFNKNRQIYFSTYQTLYTDNFYKQIPEDFFDLII 273 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DECHR ++ +I+ H LG+TATP R +Y++ Sbjct: 274 IDECHR---SRYGRWGEIVEHF----KDAYHLGMTATPRREDNIDVYEY----------- 315 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGL-------------- 221 F + ++E L I+ GYL P + + + D L Sbjct: 316 --FGEPVFEYSLAQAIEDGYLVPYKIYKI-LTNIDIEGLDISQAEEIIYDDEINPENLKD 372 Query: 222 -FSEADLNRELKKQQRITP--HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP----- 273 + ++ R + R + IM + +IF EHA+ + + Sbjct: 373 FYLPSEFERTISLPDRTRKMCEKLLNIMNKTDKKAKTIIFCVDTEHAEIVKNTINQLTNN 432 Query: 274 AEDAALITGDTPGAERDVLIENFKAQRFR---YLVNVAVLTTGFDAPHVDLIAILRPTES 330 A I + +E F+ V +L+TG D P V I +RP S Sbjct: 433 ENFAVKIVHEDKND-----LEIFRDSESNYPIVATTVDLLSTGVDIPDVKNIVFMRPISS 487 Query: 331 VSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKG-KSDNVPVQVFCP 385 L++QI+GRG RLA K I+D+ + ++ P K + +P + + Sbjct: 488 RVLFKQIIGRGSRLANNKGFFRIIDFTNATRLIDEWDIPKPPKLKVEEIPEEPYNK 543 >UniRef50_C5UXP6 Type III restriction enzyme, res subunit n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXP6_CLOBO Length = 538 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 171/372 (45%), Gaps = 37/372 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQ ++ + + V+ + TG GK++++A +A+ GR L++ EL Sbjct: 1 MKLRDYQITCLENVRE-MKLGEKK-VVHVATGGGKTVIMASIAKETIGRTLIIVGQTELR 58 Query: 63 AQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSV----ARNLDAFQ--GEFSLLI 115 Q K + + G + + + E +V + QS+ + ++ G F +++ Sbjct: 59 KQTIDKLKKVCGEDVSVGSVQGNLDEIDKDIVVSTRQSLTHPKSHRMNDILENGNFEVVM 118 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DECH+ Q+ + V + +++G TATP+ + K Sbjct: 119 IDECHQAVG-------QVKKIIDIVGDNCKVIGFTATPY----------------NKEMK 155 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 ++F +YE + +I GYL P+ + D S ++ G F ++ L + Sbjct: 156 SIFDGFVYEKDILSLIDEGYLCQPKCFRV-NTNCDISSVKT-VGGEFVQSQLENAVNNDD 213 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 R I+ +E A RK ++FA+ ++HA + A I ER+ + Sbjct: 214 R-NTLIVKAYLEKANDRKNCIVFASGIDHATNLAKCFNVNGISAKSIDSTVDSIEREQTL 272 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 +FK +F+ LVNVA+LTTGFD ++ + + RPT+S LY Q +GRGLR+A GK DCLI Sbjct: 273 NDFKEGKFKILVNVAILTTGFDFEELECVIMARPTKSKILYTQCIGRGLRIADGKKDCLI 332 Query: 354 LDYAGNPHDLYA 365 LD N Sbjct: 333 LDIVDNVKQFNL 344 >UniRef50_B2GAW8 Phage helicase n=5 Tax=root RepID=B2GAW8_LACF3 Length = 448 Score = 304 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 117/522 (22%), Positives = 186/522 (35%), Gaps = 94/522 (18%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L YQQE VD + ++V P G+GKS++IAE+ RLA G V+ + H Sbjct: 1 MFKLFGYQQELVDKARQSLAKGNHSVLLVSPAGSGKSVIIAEITRLAIEKGGHVMFMVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KELV Q + LK +V + R L +L+I DE Sbjct: 61 KELVDQIIDTF-------------LKDDIDLSHTTVMTVGKIKRRLGKLPTP-TLIITDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H YQ I ++ LG +ATP+RL + K ++ Sbjct: 107 THH---SLAKTYQDIYNWYD----NVPRLGFSATPWRLSGKGL-------------KNVY 146 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 D + ++++I + YL D S+L+ S G ++ ++ + I Sbjct: 147 DDMVEGPSVQWLIDNSYLADYTMYGYK--SGDDSQLKKSSTGDYTGRSMDD--YAKTIIR 202 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 +I E A R +++ V +K++ + AA + TP ER ++ +F Sbjct: 203 GDVIKTWREKANER-KTIVYCHAVWFSKQVAQVFNNAGIKAAHVDSKTPSGERSKIMVDF 261 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 KA + L N +++ GF+ P + +LRPTES+ LY Q R +R PGK +I+D Sbjct: 262 KAGKIMVLCNCDLISEGFNVPDCSCVVLLRPTESLVLYIQQSMRPMRFVPGK-HAVIIDQ 320 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN P+ T + G G Sbjct: 321 VGNFKKFGTPDTPRT-------------------WTLEDRKKKKGNGGGQLGP------- 354 Query: 417 DDDGHREQCDFRFRFKN-----CPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDA 471 C+ F CP C AE ++ + +D D L + K Sbjct: 355 ----PVRTCEKCFAVIPAQSRSCPICGAEIEVTK------TELDIDRDANLDDVTQFKPF 404 Query: 472 LV--LRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQ 511 + S + E+ K Y Q Sbjct: 405 SANYVVTKRPSDLKTRQDLEEYAKAKGYKPG------WIYYQ 440 >UniRef50_Q1PKZ5 DNA repair helicase rad25 n=2 Tax=cellular organisms RepID=Q1PKZ5_PROMA Length = 976 Score = 304 bits (780), Expect = 5e-81, Method: Composition-based stats. Identities = 86/433 (19%), Positives = 166/433 (38%), Gaps = 41/433 (9%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q+EA+ N R + A+++ T GK+ + A A+ RVL + H + + Sbjct: 224 QKEALINLENLRRANVKKALLISATATGKTYLSAFDAKNFNAKRVLFIVHRWNIAKKAME 283 Query: 68 KYQA-LGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGEF-SLLIVDECHRIG 123 ++ G E + + +F + +++ NL+ F +F +I+DE HR G Sbjct: 284 SFEKIFGDERTYGLYKGSINDINFDFIFSTNLTISNSQNLNKFSPDFFDYIIIDETHRAG 343 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 S YQ+I+ + + LLG+TA+P R I++ H + Y Sbjct: 344 ---ASTYQKIINYFSPKF----LLGMTASPERTDGFDIFKLFDH------------NIAY 384 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ + P + + + + +S D N+ + I+ Sbjct: 385 EIRLQKAMEAELVVPFHYFGITDLNINGEIIDEKS-------DFNKLIC--DERVERILD 435 Query: 244 QIMEFA--ATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIENFKAQ 299 ++ ++F + + A E+ + IT G ER+ I+ ++ Sbjct: 436 ISDKYGCDDNIIRGIVFCSRKDEAYELANKFNLKGRKSITLTGSQSEDERENAIQQLESD 495 Query: 300 ----RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 + ++ V + G D P ++ I +LRPT+S ++ Q +GRGLR K ++D Sbjct: 496 NLEEKLEFIFAVDIFNEGIDIPRINQIIMLRPTQSNIIFIQQLGRGLRRFEKKEYLTVID 555 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWF 415 + GN + + V S N + G A+ T + + Sbjct: 556 FIGNYQNNFLIPVALFGDTSYNKDNLRKLLSAGSAHIPGASTVNFDEISKKKIFESISNA 615 Query: 416 EDDDGHREQCDFR 428 D+R Sbjct: 616 NLQTKRELINDYR 628 >UniRef50_A6DQ75 Type I restriction-modification system R subunit (Endonuclease) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQ75_9BACT Length = 1138 Score = 304 bits (779), Expect = 6e-81, Method: Composition-based stats. Identities = 88/435 (20%), Positives = 160/435 (36%), Gaps = 77/435 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 RPYQ+ A+ L F + A++V+ TG+GK+ L + R+L LA K Sbjct: 365 RPYQERAIKKVLETFEEKRRRALLVMATGSGKTRTAVALVKCLTEGNWCKRILFLADRKT 424 Query: 61 LVAQNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ---------GE 110 LV Q K ++ + + + + ++VF + Q++ +D G Sbjct: 425 LVGQAMRKSFRPYLPNLSMVNLLKEEENNKSRMVFSTYQTMINKIDVLNEDGTRQYGVGH 484 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+I+DE HR S+Y I + L+GLTATP L + F + Sbjct: 485 FDLIIIDESHR---SIYSKYGAIFDYFDAN-----LVGLTATP--LDQRDRNTFETFDLP 534 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPER----LDMPVVQYDFSRLQAQSNGLFSE-- 224 L+ + +L + L P +S L + + E Sbjct: 535 D-------GQPTDVYSLKDAVDDKFLVMYKLKKPDLKFPSRGIKYSELPPEEQAHYEETF 587 Query: 225 --------------ADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEH 264 +N+ L + + ++ ++M E ++F + +H Sbjct: 588 TDELTDVIPEEVKGEAVNKWLFNEDTV-RKVLDKLMTEGIKVEGGDKLGKTIVFCRSRQH 646 Query: 265 AKEIVGLLP-------AEDAALITGDTPGAERDVLIENFKAQRF--RYLVNVAVLTTGFD 315 A+ +V + ++ + I +F+ + + V+V ++ TG D Sbjct: 647 AEYVVEVFDRMYPAYSGHFCQVVHNK--CYDPQQTILDFEKPQLMPQIAVSVDMMDTGID 704 Query: 316 APHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEV 368 P V + + +S S + Q++GRG R K D I DY GN Sbjct: 705 VPEVVNLVFFKSVKSKSKFWQMIGRGTRTCENLFGPGKDKKDFRIFDYCGNFDFFKVNAE 764 Query: 369 GTPKGKSDNVPVQVF 383 G G +++ ++F Sbjct: 765 GFETGAPESLMQKMF 779 >UniRef50_C0GPL2 Type III restriction protein res subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPL2_9DELT Length = 978 Score = 304 bits (779), Expect = 6e-81, Method: Composition-based stats. Identities = 85/456 (18%), Positives = 169/456 (37%), Gaps = 51/456 (11%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAE-LARLARGRVLVLAHVKELVAQNHA 67 Q EA++ R ++ TG GK+ + A + + + L +AH ++++ + Sbjct: 365 QSEALEGLKKLRTRKARSGAVIAATGVGKTYLAAFDFIQSGKDKCLFIAHREDILRKARE 424 Query: 68 KYQALGLEADIFAAGLKRKE--SHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 + + + + K+ K VF +Q++ R N+ F F +++DE H Sbjct: 425 SFSHVLGPEGLEIFSGRSKDVSYGSKAVFAMIQTLGRQGNMKRFHPREFDYIVMDEFHHA 484 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 + Y+++L + LLGLTATP R+ + + + Sbjct: 485 ---MANTYRKVLDYFQPDF----LLGLTATPERMDGRDVLWLCDY------------NIA 525 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L I L P + + D++++ + + + +L L T I Sbjct: 526 YEMRLFQAIDKELLAPFQYFAVHDPT-DYAQIAWKRT-DYDQEELTMALA-NDTRTALIA 582 Query: 243 SQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED---AALITGDTPGAERDVLIENFK 297 + + +F + + + F ++V+HA L E A + GD+ +R+ +I + Sbjct: 583 NNLKKFLPYQGKIKALAFCSSVDHAHYTANRLTQEHGFEATALVGDSSQEQREKVIARLE 642 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT---DCL 352 + + V + G D P + + +LRPT+S +++ Q +GRGLR K + Sbjct: 643 KENDPLKVICCVDIFNEGVDIPSLSHVLLLRPTQSFTVFLQQIGRGLRKVQTKDVNKHLV 702 Query: 353 ILDYAGNPHDLYAPEVGTPK-----------GKSDNVPVQVFCP--ACGFANTFWGKTTA 399 ++D+ GN + + ++ + P C + + Sbjct: 703 VIDFVGNYRSAHVAPLALAGYTSIEEYIRDSARTRGSKSGMSNPPLGCSVSPDLEVQRIW 762 Query: 400 DGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCP 435 D L E D Q C Sbjct: 763 DSKLREIVPMPRGEQLRDLYDEVVQDLGLISPGLCE 798 >UniRef50_C7GA84 DNA/RNA helicase, DEAD/DEAH box family n=5 Tax=Clostridiales RepID=C7GA84_9FIRM Length = 993 Score = 304 bits (778), Expect = 8e-81, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 146/396 (36%), Gaps = 50/396 (12%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVAQNHA 67 Q + + A+++ TG GK+ A R RVL L H +L Q Sbjct: 228 QVGFITNLKKILAAGEKRALLISATGTGKTYASAFAMRELGFRRVLFLVHRGQLARQTRK 287 Query: 68 KYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARN---LDAFQGEFSLLIVDECHRIG 123 Y+ + + G E VF +VQ++ R+ L + F +++DE H + Sbjct: 288 SYEKVFANTVSMGLVGAGYHEYEADYVFATVQTLNRDEHLLQYAKDAFDCIVLDEAHHVP 347 Query: 124 DDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIY 183 D Y++I+ H T LG+TATP + + Y Y Sbjct: 348 AD---TYRKIMDHFTPKL----WLGMTATPDKRDDNVEGRNVYEIFNY--------QIAY 392 Query: 184 ELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E+ L+ ++ L P + + + D N + HI++ Sbjct: 393 EIRLQQAMEENLLCPFHYFGITDLSM--------IGDEEAARDFN--MLTSDERVRHIVN 442 Query: 244 QIMEFAATRKGV--MIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDVL 292 Q + + V +IF + ++ +E+ + G ER Sbjct: 443 QADYYGYSGDKVKGLIFCSNIKETEELSAKFNQIINPATGKNFRTVALNGSASEQERQDA 502 Query: 293 IENFKAQR---------FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLR 343 E Y+ +V +L G D V+ + +LRPT+S ++ Q +GRGLR Sbjct: 503 FERLAMNEDESSEDRQPLDYIFSVEILNEGVDIVEVNQVIMLRPTQSPIVFIQQLGRGLR 562 Query: 344 LAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 A GK +ILD+ GN ++ + + ++ N Sbjct: 563 KASGKEYVVILDFIGNYNNNFMIPIALSGDRTYNKD 598 >UniRef50_D0XHM4 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XHM4_VIBHA Length = 551 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 104/431 (24%), Positives = 176/431 (40%), Gaps = 44/431 (10%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELVAQ 64 LR YQQ V+++L + H + V TG GK+++++ +AR + LVL H EL+ Q Sbjct: 3 LRNYQQRFVNSSLEALKNHHG-VLGVGATGCGKTVMLSSVAREFKS-ALVLQHRTELLEQ 60 Query: 65 NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGD 124 N + + K + FG VQ++AR +D +G + L+++DE H Sbjct: 61 NSKTFSWVNPALKYGLVDSKNNDWSKPYTFGMVQTIARRMDEIKG-YDLIVIDEAHHTA- 118 Query: 125 DEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYE 184 +Q+ +I+ + NP +L G+TATP R K + +F + + Sbjct: 119 --ANQHAEIIEAVRNSNPDAKLFGVTATPERADKKDLSKF-------------YETISDQ 163 Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244 + + +IK+G+L PP + V D +L+A + L + +I + Sbjct: 164 IKMNELIKNGFLVPPLGYVIKVA--DSEQLKAAKDDDEKI----EALLNLKATNERVIEE 217 Query: 245 IMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFR 302 + A R+ +IF T +HA ++ I G ER ++ + + Sbjct: 218 WRKIAGNRQ-TVIFCQTRKHAIDVTEAFQKAGIKCDYIDGVMSERERKKRLKALDTGKLQ 276 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL-----APG--KTDCLILD 355 +VNV VLT GFD+ + + +LR + S S Q+VGRGLR P K DC++LD Sbjct: 277 VIVNVNVLTEGFDSQPISCVILLRGSSSKSSLIQMVGRGLRKLDPSRYPNVVKKDCVVLD 336 Query: 356 YAGNPHDLYAPEVGTPKGKSDNVPVQ---VFCPACG------FANTFWGKTTADGTLIEH 406 + + E G + C CG + Sbjct: 337 FGVSLMKHGNLEAGDRLDFDRFDDTDDAVIQCDQCGAPVEPKETHCLECGYQVRDEAGNK 396 Query: 407 FGRRCQGWFED 417 R + + Sbjct: 397 IERESKKVVTN 407 >UniRef50_Q7UED5 Putative helicase n=2 Tax=Planctomycetaceae RepID=Q7UED5_RHOBA Length = 1071 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 152/378 (40%), Gaps = 37/378 (9%) Query: 3 FTLRPY--QQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARL------ARGRVL 53 F LRP+ Q+E +D ++K +IV TG GK+++ A + R+L Sbjct: 350 FDLRPFPFQEEILDIIAAERNVQNKYRHLIVAATGTGKTMIAAFDYARVAREAGRKPRLL 409 Query: 54 VLAHVKELVAQNHAKYQALGLEADIFAAG-LKRKESHGKVVFGSVQSVARNLDAFQ--GE 110 +AH KE+++Q ++ + + + + + +F S+QS + + Sbjct: 410 FIAHRKEILSQAMVAFRCVLRDQNFGDLLVDGSQPEQHEHLFCSIQSYNSRNLQMESAEQ 469 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F ++VDE H YQ +L H+ LLGLTATP R + + + Sbjct: 470 FEYVVVDEFHHAA---APSYQSLLEHVQPQI----LLGLTATPERSDQLDVLSWFG---- 518 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRE 230 E+ L I L P + + D L Q G + DL+R Sbjct: 519 --------GRASAEIRLPDAISRRLLCPFQYFGISDA-VDLDGLTWQRGG-YRIDDLDRL 568 Query: 231 LKKQQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAEDAALI--TGDTPG 286 + ++ E + + F +V HA+ + I + + Sbjct: 569 YTGNDVRAKLVFEKVAETVLDSQDVRGLAFCCSVAHAEFMARFFDENGIPSIALSASSTN 628 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 ER+ + + + ++ V + G D P VD + LRPTES++++ Q +GRGLRL P Sbjct: 629 DERNSAQQRLRERSVNFIFVVDLYNEGIDIPEVDTVLFLRPTESLTVFLQQLGRGLRLHP 688 Query: 347 GKTDCLILDYAGNPHDLY 364 K +LD+ G + Sbjct: 689 EKECLTVLDFIGAQRKEF 706 >UniRef50_Q07736 Type I restriction enzyme EcoAI R protein n=63 Tax=cellular organisms RepID=T1RA_ECOLX Length = 810 Score = 303 bits (777), Expect = 1e-80, Method: Composition-based stats. Identities = 86/442 (19%), Positives = 167/442 (37%), Gaps = 62/442 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 + R YQ +A++ T+ + ++V+ TG GK+ ++ + R+L LA Sbjct: 169 SPRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKNKKRILFLADR 228 Query: 59 KELVAQNH-AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-------FQGE 110 LV Q +Q G + + + ++ Q++ + Sbjct: 229 NILVDQTKNNDFQPFGT--AMTKVSGRTIDPAYEIHLALYQAITGPEEDQKAFKQVAPDF 286 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+++DECHR E+S +++IL + + +GLTATP Sbjct: 287 FDLIVIDECHRGSASEDSAWREILDYFSSATQ----IGLTATPK-------------ETH 329 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----QYDFSRLQAQSNGL----- 221 F D +Y L+ I+ G+L P + + + + + ++ Q NG Sbjct: 330 EVSSTDYFGDPVYVYSLKEGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQTDLNGEVIDDR 389 Query: 222 -FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL------ 272 +++ D +R + +R + I+ ++ ++F ++HA+ + L Sbjct: 390 IYNQKDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRALVNLNPE 449 Query: 273 ----PAEDAALITGDTPGAERDVLIENFKAQRFR---YLVNVAVLTTGFDAPHVDLIAIL 325 + ITGD ++NF + ++TTG DA L+ + Sbjct: 450 QVKKNDKYVMKITGD--DEIGKAQLDNFINPKKPYPVIATTSELMTTGVDAKTCKLVVLD 507 Query: 326 RPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEVGT-PKGKSDNVPVQV 382 + +S++ ++QI+GRG R+ GK ILD+ P+ D P + Sbjct: 508 QNIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGIPEKVMDTTPEDI 567 Query: 383 FCPACGFANTFWGKTTADGTLI 404 P F + D + Sbjct: 568 ADPESDFEEKLEEISEHDEEQV 589 >UniRef50_B5FA21 Type I restriction-modification system, R subunit n=8 Tax=Bacteria RepID=B5FA21_VIBFM Length = 816 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 108/557 (19%), Positives = 181/557 (32%), Gaps = 101/557 (18%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---------------- 48 R YQ+ A++A L+ + ++ L TG GK+ + ++A Sbjct: 159 PRYYQENAINAALDAVAKGAPKILLTLATGTGKTSIAFQIAWKLFNSKWSVKAQKKPELA 218 Query: 49 --RGRVLVLAHVKELVAQNHAKYQALGLEADIFAA-----GLKRKESHGKVVFGSVQSVA 101 R R+L LA L Q + G +A I + +G V F Q+ Sbjct: 219 KRRPRILFLADRNILANQAFNDFSPFGDDAIIRISPDEVRKNGGVPKNGSVFFTIFQTFM 278 Query: 102 RNLD-----------AFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT 150 D F +I+DECHR G +ES ++ IL + + LGLT Sbjct: 279 SGKDSEGNDAPYFGSYSPDFFDFIIIDECHRGGAHDESSWRGILEYFSSAVQ----LGLT 334 Query: 151 ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYD 210 ATP RL Y++ F +Y L+ I G+LTP + + Sbjct: 335 ATPKRLDNANTYKY-------------FGKPVYSYDLKSGINDGFLTPFKVYTIVGTLDK 381 Query: 211 FS---------RLQAQSNGLFSEADLN--RELKKQQRITPHIISQIMEFAATRKGVMIFA 259 ++ R + + ++ E D N R + R + M+ + ++F Sbjct: 382 YTYLPGDGVVVRGKVEPGRVYEEKDFNHNRGISIPAR-EEKRVHYWMDRINPNEKTIVFC 440 Query: 260 ATVEHAKEIVGLLPAE-----------DAALITGDTPGAERDVLIENFKAQR---FRYLV 305 T EHA E+ L+ IT D + + +E F + Sbjct: 441 MTQEHAGEVRDLINQYAQKKGGSDNLNYCVRITADDGKS-GEADLELFSDNEKTIPTIVT 499 Query: 306 NVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYA 365 L+TG DA +V I ++RP + ++QI+GRG RL K + D+ H+ Sbjct: 500 TSRKLSTGVDARNVRNIVLMRPCTDMIEFKQIIGRGTRLYDKKDFFSVFDFVQAHHNFSD 559 Query: 366 PEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQC 425 P+ D + C T + G + G D + Sbjct: 560 PDWDGEPE--DGATLNSDEEVCSG-PIPPDMTDEENESPSGNGAKGNGTDSGDTTNVPP- 615 Query: 426 DFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDAL-VLRCSGMSLQHG 484 P + L D + + ++ Sbjct: 616 -----PTPAPD-------------KLVVQLNDGRKRQIKHMHAALYWGSVDGKPITAHEF 657 Query: 485 HDEKGEWLKITYYDEDG 501 + L + +ED Sbjct: 658 LQQLYGDLPRFFQNEDE 674 >UniRef50_B5CWI1 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CWI1_9BACE Length = 1039 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 89/406 (21%), Positives = 164/406 (40%), Gaps = 47/406 (11%) Query: 3 FTLRPYQQEAVDATLNHFRR-HKTPAVIVLPTGAGKSLVIAELARL---------ARGRV 52 ++L P+Q++ +D ++V TG GK+++ A + R+ Sbjct: 308 YSLLPHQKQILDKLKVEREECGNFRNLVVAATGTGKTVISAFDYQSFCQQQTGVGRTSRI 367 Query: 53 LVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGK----VVFGSVQSVARNLDAF- 107 L AH +E++ Q+ Y+++ +A+ + + + +F S+ +A Sbjct: 368 LFTAHREEILRQSLHTYRSVLQDANFGTLWVGNEAPQTEADYAHLFVSISMFNSRFEALF 427 Query: 108 ----QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 + +++DE H + Y+++ +H L+GLTATP R+ + Sbjct: 428 SQLPADYYDYIVIDEAHH---SQADSYRKLFSHFHPQL----LIGLTATPERMDGKDLRP 480 Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFS 223 E+ L ++ G LTP + L + + + + Sbjct: 481 DFG------------GRISAEIRLPQALQAGLLTPFQYLCVTDDTD-LTDDSLWNGQRYV 527 Query: 224 EADLNRELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED--AAL 279 L +L +R HI+ + + A + F +HA + L A Sbjct: 528 IDRLADKLCVPER-AQHIVDALHRYLADEYTCRALCFCVNKKHADFMALQLQKYGFNAKS 586 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 +T DTP +R L E+ + YL V + G D P VD + LRPT+S++++ Q +G Sbjct: 587 LTSDTPQPQRKQLAEDLRNGLVHYLCVVDIFNEGVDIPEVDTVLFLRPTDSLTIFLQQLG 646 Query: 340 RGLRLAPGKTDCLILDYAGNPH---DLYAPEVGTPKGKSDNVPVQV 382 RGLRL+PGKT+ +LD+ H D + N+ Q+ Sbjct: 647 RGLRLSPGKTELTVLDFVAQAHKKYDFASKFRALTLRPEKNIAQQI 692 >UniRef50_A4QW28 Putative uncharacterized protein n=2 Tax=Sordariomycetes RepID=A4QW28_MAGGR Length = 643 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 147/368 (39%), Gaps = 39/368 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 +LR YQ+E + A L+ V P + L+LAH +ELV Sbjct: 43 ISLRSYQEECIQAVLSSLENGHKRIDRVPP------------ISKTATQTLILAHRRELV 90 Query: 63 AQNHAKYQALGLEADI-FAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDE 118 Q + + G + SVQS+ + F F L++VDE Sbjct: 91 EQAARHCTNAYPDKTVEIEMGSTHSSGLADITVASVQSIISGDRMAKFDASRFKLVLVDE 150 Query: 119 CHRIGDDEESQYQQILTHL---TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 H I Y + L H +K L+G++AT R + Sbjct: 151 AHHI---VAPGYLKTLAHFGLASKQQTSPHLVGVSATFSRFDGLRL-------------G 194 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 A + +Y MI +L+ D SR + +N F ++L+R + + Sbjct: 195 AAIDEIVYHKDYVDMIGDKWLSDV-LFTTVESSADISRARTGANADFLPSELSRAVNTNE 253 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 + + M A RK ++F + H + A +TGDT ER + Sbjct: 254 -VNEITVRSWMAKAPGRKSTLVFCVDLAHVNGLTQKFREFGIDARFVTGDTHKVERSERL 312 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 E F+A +F LVN V T G D P++D + + RPT+S +L Q++GRG+RL PGK +C I Sbjct: 313 EEFRAGKFPVLVNCGVFTEGTDIPNIDCVVLARPTKSRNLLVQMIGRGMRLHPGKKNCQI 372 Query: 354 LDYAGNPH 361 +D + Sbjct: 373 IDMVSSLE 380 >UniRef50_Q21ZK0 Type III restriction enzyme, res subunit n=17 Tax=cellular organisms RepID=Q21ZK0_RHOFD Length = 1138 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 89/452 (19%), Positives = 149/452 (32%), Gaps = 76/452 (16%) Query: 6 RPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVK 59 R YQ AV F ++ A++V+ TG GK+ V+ L+ + R+L LA Sbjct: 356 RYYQHRAVRRIGETFELENQRKALLVMATGGGKTRVVVALSDVLTRCNWAKRILFLADRV 415 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG--------EF 111 LV Q ++ ++ + + + G+V + ++ +D F Sbjct: 416 ALVKQAVNAFKTHLPDSSPVNL-VSERHADGRVFVSTYPTMMGLIDDAADGQRRFGVGHF 474 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DE HR +Y+ I + + L+GLTATP Y Sbjct: 475 DLIIIDEAHR---SVYQKYRAIFDYFDAM-----LVGLTATPKDEIDHNTYSLFDLES-- 524 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP---------------VVQYDFSRLQA 216 L + GYL PP + +P + + L+ Sbjct: 525 -------GVPTDVYGLDEAVAEGYLVPPRSISVPLKFQREGIKYKDLSEEEKEQWDALEW 577 Query: 217 QSNGLF----SEADLNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAK 266 +G A LN+ L + ++ +M +IFA HA Sbjct: 578 DEDGNVPDAVDSAALNKWLFNTDTV-DKVLENLMSQGEKVAGGDRLGKTIIFAKNNAHAD 636 Query: 267 EIVGLLP-------AEDAALITGDTPGAERDVLIENF--KAQRFRYLVNVAVLTTGFDAP 317 I A ++T T A+ LI+ F K ++V +L TG D P Sbjct: 637 FIADRFNVNYPHYKGAFARVVTYKTEYAQ--SLIDEFSMKEGMPHIAISVDMLDTGIDVP 694 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLA-------PGKTDCLILDYAGNPHDLYAPEVGT 370 V + + S + + Q++GRG RL K + DY N Sbjct: 695 EVVNLVFFKIIRSKTKFWQMIGRGTRLCLDLYGPGQNKQFFNVFDYCQNLEFFSLELPPD 754 Query: 371 PKGKSDNVPVQVFCPACGFANTFWGKTTADGT 402 + ++F + A Sbjct: 755 EGKNPVPLSTRLFRARLEMIAELDKRMAAGDH 786 >UniRef50_C4ZF20 Type I restriction-modification system R subunit (Endonuclease) n=22 Tax=Firmicutes RepID=C4ZF20_EUBR3 Length = 1116 Score = 301 bits (772), Expect = 4e-80, Method: Composition-based stats. Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 76/476 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAH 57 T RPYQ+EAV A + +IV TG+GK+ V + + R +L LA Sbjct: 343 ITNRPYQKEAVTAVCDAITNKHRKMLIVQATGSGKTRVSISIVDVLRRHNYVKNILFLAD 402 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHG-KVVFGSVQSVARNLDA---------- 106 K LV Q Y L + + + +++F + ++ +D Sbjct: 403 RKALVKQAKNNYTNLLPDLSCCNLLDNKDDPESCRMIFSTYPTMMNAIDERKNKYGEKLF 462 Query: 107 FQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 G F L+I DE HR +YQ+I + + LLG+TATP Y Sbjct: 463 SPGHFQLIICDEVHR---SIYKKYQEIFEYFDAM-----LLGMTATPKNEIDKNTYGVFD 514 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM----------PVVQYDFSRLQA 216 + L ++ GYL L+ D + + Sbjct: 515 LER---------GVPTFAYELEKAVEEGYLVNYSTLEYKSKIMESGIHYDELSDEEKEEY 565 Query: 217 QS--------NGLFSEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATV 262 + S +N L I ++ ++ME +IFA Sbjct: 566 EDTFSDDDTVGDDISGEAVNTWLFNADTI-DKVLRELMEKGLKIEGGDKLGKTIIFAKNS 624 Query: 263 EHAKEIVGLLPAEDAAL-------ITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTG 313 HA+ IV I + D LI+ F + V+V +L TG Sbjct: 625 LHAQAIVKRFNKLFPEYGGDFIKRIDYSIKYS--DSLIDEFSTSDKMPQIAVSVDMLDTG 682 Query: 314 FDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAP 366 D P + + + +S + + Q++GRG RL P K LI D+ N Sbjct: 683 IDIPEILNLVFFKKVKSYAKFWQMIGRGTRLCPNLLGEGMDKERFLIFDFCNNFEYFRVN 742 Query: 367 EVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHR 422 + G G ++++ +++ + + + + ++D Sbjct: 743 KNGAENGITESLNEKIYNTKAQIVRELQAPVYSGDEIYADYRKSLVDDLKEDVISL 798 >UniRef50_C7D879 Type I restriction enzyme, R protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D879_9RHOB Length = 1131 Score = 301 bits (771), Expect = 5e-80, Method: Composition-based stats. Identities = 100/488 (20%), Positives = 170/488 (34%), Gaps = 84/488 (17%) Query: 6 RPYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQQ A+ F +H + A++V+ TG+GK+ + L RVL LA Sbjct: 359 RFYQQRAIRRVGEAFEKHAQRKALLVMATGSGKTRTVIALIDQLMRANRVKRVLFLADRI 418 Query: 60 ELVAQNHAKYQALG---LEADIFAAGLKRKESH--GKVVFGSVQSVARNLDAF------- 107 LV Q H ++ A++ +K H +V + ++ ++ Sbjct: 419 ALVKQAHGAFKTHLSATPSANLLERHDPKKNDHSGARVCMSTYPTMMGLIEQMKGGQKQF 478 Query: 108 -QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 G F ++++DE HR +Y+ I + + L+GLTATP Y Sbjct: 479 GPGHFDMIVIDEAHR---SVYRKYRAIFEYFDCL-----LVGLTATPREEIDKDTYSLFG 530 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP---------------VVQYDF 211 L + G+L PP+ + +P Q ++ Sbjct: 531 LEK---------GIPTDSYDLDDAVSDGFLVPPKTISVPLKFQREGIAYDQLSDDEQEEW 581 Query: 212 SRLQAQSNG----LFSEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAAT 261 L+ G +LN+ L + + ++ +M +IFA Sbjct: 582 DALEWDEEGNVPDRVESGELNKWLFNEDTV-DKVLEHLMRNGIKVDGGDRLGKTIIFAKG 640 Query: 262 VEHAKEIVGLLP-------AEDAALITGDTPGAERDVLIENF--KAQRFRYLVNVAVLTT 312 +HA+ I+ E A LI + LI++F K + V+V +L T Sbjct: 641 NKHAQFIIDRFNANYPHYKGEFAKLIDYSVTYTQ--SLIDDFSEKDKAPHIAVSVDMLDT 698 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYA 365 G D P V + + S + + Q+VGRG RL P K + +I D+ N Sbjct: 699 GIDVPEVVNLVFFKVVRSKTKFWQMVGRGTRLCPNLFGPDEDKDEFVIFDFCQNLEFFSE 758 Query: 366 PEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQC 425 T + + ++F D E R + +D+ Sbjct: 759 NPNFTDGVGTKPMGERLF----ATRVELLDAAQEDDNPHEDLVRSVKQRLQDEVNGMPLD 814 Query: 426 DFRFRFKN 433 +F R K Sbjct: 815 NFIVRAKR 822 >UniRef50_B4UTX6 p088 n=1 Tax=Rhizobium phage 16-3 RepID=B4UTX6_BP163 Length = 576 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 144/595 (24%), Positives = 238/595 (40%), Gaps = 79/595 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLA 56 + LR YQ+ ++DA ++ +IVLPTGAGK+LVIA+L R+L + Sbjct: 1 MLDLRDYQRASLDALYAYWAEGGGNGLIVLPTGAGKALVIAKLIEELLADYPDMRILNVT 60 Query: 57 HVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLL 114 H LVAQN ++ L A IF+AGLKR+++ +V+F +QSV ++ L+ Sbjct: 61 HDSRLVAQNFKEFIGLSPFAPAGIFSAGLKRRDARAQVLFCGIQSVWNKVEQIGN-VDLI 119 Query: 115 IVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY-----HGM 169 IVDE H I + +QY + + K NP R+ G TAT FR+ G + Sbjct: 120 IVDEAHAISRNANTQYGKFFKAVRKHNPDSRVCGTTATDFRMDSGRLTDDLDDDEAVDEN 179 Query: 170 VRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNR 229 LF D +YE L +I+ GYLT + D + + G + + Sbjct: 180 GAPVRFKLFHDVVYEAKLGDLIEQGYLTRLTS-QKTAAKIDLKGIGTR-GGEYIPGQVAE 237 Query: 230 ELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGA 287 +RI I++ M + R+ + F+ + E+A+ + + A++T D Sbjct: 238 A---AERIIEEAIAEDMIASEGRRAGLFFSTSKENARHVAEAIRRHGRTCAVLTSD-NAH 293 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 E D + +F+A + + +V+++TTG + P VD I++L T+S QI+GRG R +PG Sbjct: 294 ETDKIFTDFRAGKIWAISSVSMITTGTNFPFVDFISLLLSTKSAGKLVQILGRGTRNSPG 353 Query: 348 KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHF 407 KTDCL+ D+ N + P+ + Sbjct: 354 KTDCLVADHGRNLAYHGPIDQIQPREPGKGTG-------------------------DQP 388 Query: 408 GRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALR 467 + C D +G C I+ C C + ++ A Sbjct: 389 RKLCPQDSTDTEGKT-------------GCGELIPISQMTCHCCGYIFPPSEEEKITAKA 435 Query: 468 LKDALVLRCSGMSLQHGHD--------EKGEWLKITYYDEDGADVSERFRLQTPAQRTAF 519 + ++ + G K + +K TY V+E A Sbjct: 436 DEKPVLSSEKPWHVVRGRTFRHHPGKEGKPDSIKCTYMI-GLKSVNEWHCCAHSGYPKAK 494 Query: 520 EQLFIRPHTRT---PGIPLRWITAADILAQQALL--------RHPDFVVARMKGQ 563 + H + P P+ WI LA+ A + ++PD R+ + Sbjct: 495 ADRWWVAHGGSRPMPKTPMEWIERQHELAETAEIQLDYSRNHKYPDVTAHRVGAK 549 >UniRef50_B5U5V9 Gp54 n=8 Tax=unclassified Siphoviridae RepID=B5U5V9_9CAUD Length = 598 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 169/370 (45%), Gaps = 28/370 (7%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAHVKE 60 LRPYQ+EAV+A +H+ + T +VLPTG GKS VI A R VL++AH E Sbjct: 39 ELRPYQREAVEAIESHWSQGVTRVGVVLPTGTGKSTVIGRTAVNGYQNREPVLMVAHRGE 98 Query: 61 LVAQNHAKYQALGLEADIFAAGLKR---KESHGKVVFGSVQSVA-RNLDAFQGEFSLLIV 116 L+ Q + G+ R + +V ++Q++A + G ++ Sbjct: 99 LIDQMAGTIFEVDPSIPRSHVGIVRAEMDDHSAPIVVATLQTLATAHRREAVGFRRRILW 158 Query: 117 DECHRIGDDEE-SQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 DE H G + + + ++ + + G TAT R K G Sbjct: 159 DEVHHAGAEGFHTTFTELGGYTDALFA-----GFTATMRRDDK---------GKSPVGLG 204 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + +YE + + I GYL P L + + + G F ++DL + + Sbjct: 205 DVIEKVVYEKDILWAIDSGYLVRPRGLTVRIKNLNALDDVRTVAGDFQQSDLAEVM---E 261 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 T +++ I AA R+ +IFAA+V+ A I L A D A +TG AER + Sbjct: 262 AATEYVVDAIKLHAADRR-PIIFAASVDAAHHIADALTAADFPAVAVTGSMSYAERQPVY 320 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 E ++ + LV V VLT G D P D + + RPT S +LY Q++GR LRL GK D L+ Sbjct: 321 EAYRNGTAKALVTVQVLTEGADFPMCDCVVLARPTRSRNLYSQMIGRALRLYDGKQDALV 380 Query: 354 LDYAGNPHDL 363 LD AG+ + Sbjct: 381 LDLAGSSRSM 390 >UniRef50_D1PBM5 Putative prophage LambdaSa03, helicase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PBM5_9BACT Length = 553 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 168/380 (44%), Gaps = 44/380 (11%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---------ARGRVLVL 55 LRPYQ E + R ++ +PTG GK++V + + ++L++ Sbjct: 36 LRPYQAEMKHNVYGLWDR-IDNVMLQMPTGTGKTIVFTSVVKDILRWCNLHSRESKILIV 94 Query: 56 AHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQS-VARNLDAFQGE--FS 112 AH +EL+ Q K + + +G + + + S+Q+ ++R F Sbjct: 95 AHRRELIRQASRKLGN--IPHGVIVSGE-KLDLDKSIQVASIQTFMSRRHYEIMRRVQFD 151 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 +I+DE H YQ++ P+ + LG+TATP+R+ Sbjct: 152 FIIIDEAHHC---MAPGYQKLWEMF----PNSKKLGVTATPWRM-------------SHC 191 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL----QAQSNGLFSEADLN 228 +LF D + + + + GYL + + + + + ++G + +++L+ Sbjct: 192 GFTSLFGDIVLAKSIEWFVNQGYLANYDYISIKPTSEVQHAINGIDRMGADGDYLDSELS 251 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL--ITGDTPG 286 + K + ++A K +I+A +HA I L + ++ I G TP Sbjct: 252 AVIDKAKIRAGL-YKSYEKYA-KGKKGIIYAIDRKHASNICDLYATKGVSVCMIDGTTPT 309 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 AER+ I +F +VNV + + GFD P ++ I + RPT+S+SLY Q VGRGLR++ Sbjct: 310 AEREQKIADFANGSIEVIVNVNIFSEGFDCPDIEFIQLARPTKSLSLYLQQVGRGLRISK 369 Query: 347 GKTDCLILDYAGNPHDLYAP 366 GK +ILD G + P Sbjct: 370 GKETTIILDNVGLYNRFGTP 389 >UniRef50_C2FEA8 Helicase n=4 Tax=Bacilli RepID=C2FEA8_LACPA Length = 458 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 111/520 (21%), Positives = 192/520 (36%), Gaps = 86/520 (16%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHV 58 +F L PYQ+E V+ ++V P G+GKS++IAE+ARLA G V+ H Sbjct: 1 MFQLHPYQKELVNQAREKLADGHKSVLLVSPAGSGKSVIIAEIARLAVMKGGHVMFTVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 KEL+ Q + A G++ K +V +AR L + +L+I DE Sbjct: 61 KELIDQITKTFIANGVDLS-------------KCTIMTVGRIARRLGKL-PKPNLIITDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H Y +I + LG +A+P+RL + ++ Sbjct: 107 THH---SLAKTYLKIYE----FYKDIPRLGFSASPWRLSGKGLGD-------------VY 146 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++++I+H YL P + + D +L+ S G +S ++ + I Sbjct: 147 ETMVEGPTVKWLIEHHYLAPFDYYAPTL--IDVEKLKKSSTGDYSTKSIDEA--NTKMIF 202 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALIT--GDTPGAERDVLIENF 296 ++S + A + +++A ++E +K + A + I TP RD + F Sbjct: 203 GDVVSHYQKLA-NGRQAIVYAHSIEESKRVAATFNAAGISAIHVDSKTPALNRDEAMTAF 261 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 K + R + NV +++ GFD P ++ +LRPT S+ L Q RG+R P K +I+D+ Sbjct: 262 KDGKIRIISNVDLISEGFDVPECGVVIMLRPTASLVLDIQQSMRGMRYRPNKR-AIIIDH 320 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 N + P+ +E ++ + + Sbjct: 321 VANVYRFGLPDTDRE------------------------------WSLEDRPKQEKHRGK 350 Query: 417 DDDGHREQCDFRF-----RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDA 471 D + C F + K CP C VDP LK + Sbjct: 351 SDGPAIKSCPKCFGIVPAQVKQCPLCGYSFRADGADLE------VDPTAKLKKVDKKVFK 404 Query: 472 LVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFRLQ 511 +V S E + + Y + Sbjct: 405 IVADYSKTKYGQMKAEDADSPEDMYAIAKAHGYKPGWAYH 444 >UniRef50_C6LMG2 Type I restriction-modification system, R subunit n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LMG2_9FIRM Length = 1132 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 162/469 (34%), Gaps = 75/469 (15%) Query: 6 RPYQQEAVDATLNHF-RRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 R YQ+ A+ A + F +++ A++V+ TG+GK+ + L +L LA Sbjct: 370 RYYQESAIKAVCSSFGEKNRRKALLVMATGSGKTRTVIALCDCLLKAGWIRNILFLADRN 429 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE--------- 110 LV Q + + ++ + VF + Q++ +D + Sbjct: 430 SLVTQAKRSFVNMLPNLSCTNLVEEKDNYNAHCVFSTYQTMMNCIDTTCDDKGKLFTCGH 489 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+I DE HR ++Y+ I + L+GLTATP Y+ Sbjct: 490 FDLVICDEAHR---SIYNKYRDIFAYFDA-----PLIGLTATPKDEIDKNTYEVFELEN- 540 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYD----FSRLQAQSNGLFSE-- 224 Y L +K GYL ++ + + + L + + E Sbjct: 541 --------GVPTYGYDLAQAVKDGYLVDYVSVESELKFIEQGIVYDELSEEDKQTYEETF 592 Query: 225 -------------ADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEHA 265 + LN + + I ++ +M ++ +IFA +HA Sbjct: 593 TDEHGNLPESISSSALNTWIFNEDTIKK-VLHILMTEGIKIDYGQKLGKTIIFAKNHDHA 651 Query: 266 KEIVGLLPAED------AALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAP 317 ++I+ + E A +I A+ I+ F + + ++V +L TG D P Sbjct: 652 EKILEVFHKEYPHLTDYAKVIDNYMTYAQ--SAIDEFSDPKKMPQIAISVDMLDTGIDVP 709 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPG------KTDCLILDYAGNPHDLYAPEVGTP 371 V + + S + + Q++GRG RL PG K I D+ N + G Sbjct: 710 EVLNLVFFKKVMSKAKFWQMIGRGTRLCPGLIDGEDKQKFYIFDFCKNFE-FFRMNKGKA 768 Query: 372 KGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 + +F + LI + Q E Sbjct: 769 TANMIALQGAIFNLKFEISYKLQDIEYQTDRLIAYRDALVQQMSEKVQE 817 >UniRef50_B2A6M4 Type III restriction protein res subunit n=5 Tax=Firmicutes RepID=B2A6M4_NATTJ Length = 1082 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 100/490 (20%), Positives = 165/490 (33%), Gaps = 93/490 (18%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAH 57 LR YQ+EA+ A + +I + TG GK+ + L RVL L Sbjct: 371 LGLRYYQEEAIKAIEKGLEEGRQSLLIAMATGTGKTRMAIGLIYRLVKSRRFKRVLFLVD 430 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q ++ LE+ ++ + KV +VQ + R + Sbjct: 431 RNALGKQAENAFKDSKLESFNSFTEIFELQSLKAPNPNPETKVHISTVQGMMRRIYYNDP 490 Query: 110 --------EFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLR 145 ++ ++VDE HR +D S+Y+Q+L + V Sbjct: 491 EKDKPTVDQYDCIVVDEAHRGYTLDSEMEELELYFRDHNDYVSKYRQVLDYFDAV----- 545 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 +GLTATP +F IY R + GYL E Sbjct: 546 RIGLTATP-----------------ALHTVEIFGSPIYTYSYREAVVDGYLIDHEPPYQI 588 Query: 206 VVQYDFSRLQAQSNGLFSE-----ADLNRELKKQQR---------------ITPHIISQI 245 + + Q D+ +E+ + + +I ++ Sbjct: 589 NTKLKKEGINWQVGEEVDVYDAKSGDIKKEVMEDEVEIDVSQFNKQVITESFNRTVIKEL 648 Query: 246 MEFAATR--KGVMIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDVLIE 294 + + +IFAA +HA IV +L E D A++ I+ Sbjct: 649 VNYIHPELEGKTLIFAANDDHADTIVRILKEELENKYGPIEDNAVMKITGSLKNPLQAIK 708 Query: 295 NFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 F+ +R +V V +LTTG D P + + +R S LY+Q++GR R K Sbjct: 709 LFQNERLPNIVVTVDLLTTGVDVPPICSLVFMRRVRSRILYEQMLGRATRRCDEIDKDHF 768 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 I D L P K NVPV+ N+ + + R+ Sbjct: 769 NIFDAVEIYEALKPYTDMKPVVKKPNVPVKQLVNELEQINSTDKQKNHIDQIKAKIQRKS 828 Query: 412 QGWFEDDDGH 421 + W E++ + Sbjct: 829 KHWTEEEKEN 838 >UniRef50_D1BZV1 Type III restriction protein res subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZV1_XYLCX Length = 980 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 86/384 (22%), Positives = 166/384 (43%), Gaps = 40/384 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-ARGRVLVLAHVKELVAQNHA 67 Q++A++A + A+++ TG GK+++ A R R+L + H ++++ + Sbjct: 239 QRDALNALAAVRDSGEKRAIVISATGTGKTILSALDVRAVNPRRLLFVVHREQILDRTIQ 298 Query: 68 KYQAL--GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQGE-FSLLIVDECHRI 122 +Y+ + G +D K+ + +F +VQ++A+ L F + F +IVDE HR Sbjct: 299 EYRKVLGGDASDYGKLTGSSKDFAARYLFATVQTLAQPDVLARFPADVFDYVIVDEAHRG 358 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G +++++ H V +LG+TATP R +++ ++ + Sbjct: 359 GS---PTHRRVIGHFDPVF----MLGMTATPERTDGFNVFELFHYNVP------------ 399 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L + LTP + +D + L L QR++ I Sbjct: 400 YEIRLNRALDEDMLTPFHYYGITDATFDDDTTVDALSDL-------DLLVSPQRVSHLIW 452 Query: 243 S-QIMEFAATRKGVMIFAATVEHAKEIVGLLPA-------EDAALITGDTPGAERDVLIE 294 + + A T +IF + + A+ + +L A +TG R+ +E Sbjct: 453 ALETYAQAGTAPRGLIFCSRTQEARRLSDVLNRSLLRGRPLRTASLTGVDSIEHRERTVE 512 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 ++ Y++ V V G D P ++ + +LR T+S ++ Q +GRGLR K ++L Sbjct: 513 QLESGELDYILTVDVFNEGVDIPSINQVIMLRQTQSAIVFVQQLGRGLRKCDQKEYLVVL 572 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNV 378 D+ GN + + + S N Sbjct: 573 DFIGNYANNFLIPIALFGDDSLNK 596 >UniRef50_Q47CK6 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal n=3 Tax=Rhodocyclaceae RepID=Q47CK6_DECAR Length = 504 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 120/513 (23%), Positives = 190/513 (37%), Gaps = 55/513 (10%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA---RLARGRVLVLAH 57 M+F LRPYQQ A R + LPTG GK+L + +V+ LA+ Sbjct: 1 MMFNLRPYQQSAEHKARLALARGLKRIALYLPTGGGKTLTATSIIIKAVAKGRKVVFLAN 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 K+LV Q A G+ I A H +V+ S+ +V ++ + LLI+D Sbjct: 61 RKQLVNQTSAVLYRYGIPHGILQAE-NTARIHEQVLVASIDTV--HVRGLPDDVGLLIID 117 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + E +Y+++L ++ +GLTATPF +G G Y +L Sbjct: 118 EAHGVAGSE--KYRKLL----ITYNNVPAVGLTATPFAVGMGKHYD--------ELGGSL 163 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG--LFSEADLNRELKKQQ 235 F++ + ++ +I YL + + +G +++++L K + Sbjct: 164 FQELVVGATIKELIDAEYLVDVDIYAPSEPDMKGVKSTKGLDGLLDYNQSELEDAADKPE 223 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 I I+ + A K + FA ++ H+K IV A A I ER ++ Sbjct: 224 LI-GDIVGHWFKLA-RGKQTVCFATSIPHSKHIVEQFQAAGVAAEHIDYHADDDERAAIL 281 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 F L NVA+L G+D P +++ + RPT S+ + Q+VGR LR A GK L+ Sbjct: 282 GRFAHGETMVLSNVALLAEGWDCPATEVMILARPTRSLIRFIQMVGRILRPADGKIKALL 341 Query: 354 LDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQG 413 LD++G+ L P P D P +T E + C Sbjct: 342 LDHSGSTARLGHPCDDLPLELDDGKPK--------------ASSTEKKERAESLPKACPF 387 Query: 414 WFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALV 473 CP C + D LV D K R + Sbjct: 388 CKFMRPAG---------VHACPACG-KAPERQSDVVVGDGDLVKMDRK-KPIKRETGQWI 436 Query: 474 LRCSGMSLQHGHDEKGEWLKITYYDEDGADVSE 506 + K W ++ E Sbjct: 437 Y-SQLLGYAKSKGYKSGWA---FHKYFEFTGKE 465 >UniRef50_C6CZ63 Type III restriction protein res subunit n=3 Tax=Bacillales RepID=C6CZ63_PAESJ Length = 1083 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 97/489 (19%), Positives = 168/489 (34%), Gaps = 94/489 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAH 57 LRPYQ++A+ + + ++ + TG GK+ + L R+L L Sbjct: 371 LKLRPYQEDAILSVEGAIDEGQRSILLAMATGTGKTRMAIGLIYRLIKHNRFKRILFLVD 430 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ- 108 L Q A ++ LE+ ++ K+ KV +VQ + + + + Sbjct: 431 RSALGRQAEAAFKDSKLESYHSFTEIFELQTLDDKKPNPETKVQIATVQGMVKRIFYNES 490 Query: 109 --------GEFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHL 144 ++ +IVDE HR +D S+Y+++L + Sbjct: 491 DEAEIPSVDQYDCVIVDEAHRGYTLDKEMSELELEFRDHEDYVSKYRKVLDYFDA----- 545 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM 204 +GLTATP +F ++ R + GYL E Sbjct: 546 FRIGLTATP-----------------ALHTVEIFGRPVFNYSYREAVIDGYLIDHEPPMQ 588 Query: 205 PVVQYDFSRLQAQSNGLFSEADL-----NRELKKQQR---------------ITPHIISQ 244 Q ++ Q + D+ +EL + + I+ + Sbjct: 589 FETQLKKHGIKWQVGEEVAVYDISSGNVEKELLQDEINLEVTQFNKTVITENFNRVILEE 648 Query: 245 IMEFAA--TRKGVMIFAATVEHAKEIVGLLPAE---------DAALITGDTPGAERDVLI 293 + ++ + +IFAAT +HA +V + E D A++ + I Sbjct: 649 LTKYIDPESEGKTLIFAATDDHADMVVRIFKEELEKAYGAVDDNAVLKITGSIKDPLHTI 708 Query: 294 ENFKAQRFR-YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTD 350 + FK +R +V V +LTTG D P + + LR S LY+Q++GR R GK Sbjct: 709 KLFKNERLPSIVVTVDLLTTGIDIPSITNLVFLRRVRSRILYEQMLGRATRRCDEIGKDH 768 Query: 351 CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRR 410 +I D G L P V + V +I R+ Sbjct: 769 FMIYDAVGIYETLKPYTDMKPVVTKPTVSLDVLTSELAQLEDEGQGKPHKDQIIAKMQRK 828 Query: 411 CQGWFEDDD 419 + W + D Sbjct: 829 KRTWTQKDH 837 >UniRef50_C9M6T4 DNA/RNA helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T4_9BACT Length = 551 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 169/365 (46%), Gaps = 36/365 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLA--RGRVLVLAHVK 59 LRPYQQ AV A +R +++VLPTG GK++V +AR GRVL+LAH + Sbjct: 1 MELRPYQQAAVTAIEEGWRDGSLRKSLLVLPTGTGKTVVFCTVARQTTGDGRVLILAHRE 60 Query: 60 ELVAQNHAKYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSV--ARNLDAFQ-GEFSLLI 115 EL+ Q KY + E A A VV GSVQ++ + L F FS +I Sbjct: 61 ELIEQAREKYYRITGEIAAKEKAHCSCFGDPASVVVGSVQTLQNVKRLSKFPADYFSTII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H YQ++L H P R+LG+TATP R K + ++ Sbjct: 121 IDEAHHA---LAVGYQRVLEHF----PRARVLGVTATPDRGDKRNLAEY----------- 162 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS---NGLFSEADLNRELK 232 F YE L+ I GYL P L P+ D S ++ F A+L+ L Sbjct: 163 --FDGVAYEYSLKSAIADGYLCPIRALTAPLR-LDVSNVKTSRSKFGNDFDRAELSVAL- 218 Query: 233 KQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVL 292 + P I I E A+ R ++F V A++ A + R Sbjct: 219 --EEYLPQIAQCIKENASAR-KTVVFLPLVSIAQQFQRECEAAGLEAREVNGESDNRAET 275 Query: 293 IENF-KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDC 351 + F KA L N +LT G+D P VD + +LRPT+ +LY Q++GRG R+ PGK + Sbjct: 276 LAWFDKAGPGSVLCNAMLLTEGWDCPSVDCVVVLRPTKVRALYCQMIGRGTRICPGKENL 335 Query: 352 LILDY 356 LILD+ Sbjct: 336 LILDF 340 >UniRef50_Q5NWL0 Type I restriction-modification system (Restriction subunit) n=4 Tax=Betaproteobacteria RepID=Q5NWL0_AZOSE Length = 714 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 100/522 (19%), Positives = 169/522 (32%), Gaps = 89/522 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 R YQ +D + ++ + TG GK+ A + RVL L Sbjct: 139 RDYQTACIDKLCQEITAGRRKLLVEMATGTGKTRTAAAFIKRLFEANAVTRVLFLVDRIP 198 Query: 61 LVAQNHAKYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q + + +R + ++ ++QS+ + G F L+I DE Sbjct: 199 LAKQTEDAFAEHLSDFPAYVLRTGRRFQDEKRITITTLQSMVNIYHEYSAGYFDLVISDE 258 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL- 177 CHR ++ +L H + +GLTATP G + VR + Sbjct: 259 CHR---SIYGKWSGVLKHFDGIQ-----VGLTATPCVANLGDLGDAEDKLFVRDTLRFFE 310 Query: 178 FRDCIYELPLRYMIKHGYLTPPERL-------------DMPVVQYDFSRLQAQSNGLF-- 222 + ++ I GYL P + ++ + D+S + + F Sbjct: 311 VDKPTFSYKMKDAIHDGYLVPYQIYKAKTVKTAAEGGFEVKRGELDWSAMDTTTRAEFEK 370 Query: 223 ----------SEADLNRELKKQQRITPHIISQIMEFAATR-------------KGVMIFA 259 L R+ +R I+ + E ++FA Sbjct: 371 LFEGSDAIVIDPNALERKFTIPER-NRAIVREFREVLEKGFTDAKGVVRKPLLGKTIVFA 429 Query: 260 ATVEHAKEIVGLLPAEDAA------------LITG--DTPGAERDVLIENFKAQR-FRYL 304 T HA+ + L + A +++G + I+ FK + + L Sbjct: 430 VTKRHAETLAQLFDSAFADQKPSPEVRYADYVVSGMGKDDTVDGMTKIKRFKKEPFPKVL 489 Query: 305 VNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLY 364 V+V +L TGFD P V + R T S LYQQ+ GRG R A GK + D+ G Sbjct: 490 VSVNMLDTGFDCPEVANLVFARFTRSAILYQQMRGRGTRKAKGKPVFTMFDFVGVTDYHG 549 Query: 365 APEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWF--------- 415 + + +Q P + + +H + W Sbjct: 550 DNDAEGEG----GIVIQKAAPK----RPTEPRKLLSLDIDDHIDPTTREWVTVDEDGNMV 601 Query: 416 --EDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVL 455 E + + + RF Q + AR R + L Sbjct: 602 FPEASEQKQAEIGARFEAWLLAQEETLSPDEARWLRTVGSQL 643 >UniRef50_Q856Y4 Gp50 n=7 Tax=unclassified Siphoviridae RepID=Q856Y4_9CAUD Length = 571 Score = 299 bits (765), Expect = 3e-79, Method: Composition-based stats. Identities = 123/414 (29%), Positives = 180/414 (43%), Gaps = 36/414 (8%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVKE 60 LR YQ AV A + +VLPTGAGKS VI +LA + RV+ LAH E Sbjct: 11 ELRSYQTAAVAAVERDWESGTKRTGVVLPTGAGKSTVIGKLASNAYRSGKRVVALAHRAE 70 Query: 61 LVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVA--RNLDAFQGEFSLLI 115 L+ Q A+ +DI + + H +VF S+Q++A + +A +++ Sbjct: 71 LLFQMRRDMLAVDPTIPASDIGIVMAEHDDHHAPIVFASLQTLAHAKRRNALGRR-DVIL 129 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 DE H G + + L L G TAT +R KG I Sbjct: 130 WDEFHHAGAEG---FHATFEELGGYTH-AYLCGFTATMYRNEKGTI-----------GLG 174 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + + YE LR+ IKHG+L P + + D G F +L + + Sbjct: 175 DVIQKVSYEKDLRWAIKHGFLVQPRGKTVRIKNLDKLDDVRTVAGDFKNDELAEVM---E 231 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 +++ I E A + ++FAA+V+ A I + A +TG P AER+ + Sbjct: 232 AAVEYVVDAI-ELHARERTNIVFAASVDGAHMIADAINERGMTAEAVTGSMPHAEREQVY 290 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 + ++ + LV V VLT G D P D + + RPT S +LY Q+VGR LRL PGKTD L+ Sbjct: 291 DRYRTGVTKNLVTVMVLTEGADFPMCDTVVMARPTRSKNLYAQMVGRALRLFPGKTDALV 350 Query: 354 LDYAGNPH-----DLYAPEVGTPKGKSDNVPVQV-FCPACGFANTFWGKTTADG 401 LD +G+ +L G P + D + CP C T D Sbjct: 351 LDLSGSTRAMKLVNLTDLSPGAPVEEVDEQGQAIAVCPTCDLYVTECVCGLVDD 404 >UniRef50_B1GS37 Putative ATP-dependent helicase n=1 Tax=Salmonella phage Vi II-E1 RepID=B1GS37_9CAUD Length = 644 Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats. Identities = 134/642 (20%), Positives = 233/642 (36%), Gaps = 107/642 (16%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTP---AVIVLPTGAGKSLVIAELARLARGRV---LVLA 56 YQ R + + +GK+++I+ L + LV++ Sbjct: 25 IEPYDYQWLVYAKCAEVIRNFGKKPEPSYVTASVSSGKTVMISMLCSRFQDMGWDGLVIS 84 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNL------------ 104 E+ QN ++ +++A L RK + ++ G+ ++ L Sbjct: 85 RQGEIAEQNAEMMWECSVKNSLYSASLGRKSTAYPIICGTEGTIVNALFDKKDESSGDVK 144 Query: 105 ----DAFQGEFSLLIVDECHRIGD------DEESQYQQILTHLTKVNPHLR-----LLGL 149 F F + DE H++ + +QY ILT L + +G Sbjct: 145 KGGLSDFAPRF--CLCDEGHQVPWQDIISENPTTQYGVILTELNRRCKAKHGHEMITIGF 202 Query: 150 TATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP--PERLDMPVV 207 T +PFR + A +++ I + +YM+ G++ P D+ + Sbjct: 203 TGSPFRG-------------TESMKGAYWKNEIINIDTKYMVDRGFVVPTIFGLHDVDDL 249 Query: 208 QYDFSRLQ---AQSNGLFSEADLN---RELKKQQRITPHIISQIMEFAATRKGVMIFAAT 261 YD S + F+ L E+ +Q +T I+ ++ME R GV+I A Sbjct: 250 HYDLSAFRGSDIDGTQDFTAEQLKQMQEEILEQGTLTQKIMLKVMELTKNRNGVLITCAG 309 Query: 262 VEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDL 321 +H +E LP A++T D R +++ + +Y +A LTTG + P D Sbjct: 310 KKHCQEAAKYLPEGSYAIVTEDMGQKARRKALKDAYTGKIKYTFQIAALTTGVNIPLWDT 369 Query: 322 IAILRPTESVSLYQQIVGRGLRLAP--------GKTDCLILDYAGNPHDLY-----APEV 368 ILR S++L Q++GRG+RL K D L+LD++G +L Sbjct: 370 SVILRKIMSLTLLVQLLGRGMRLLKKEQIDAGYHKEDHLVLDFSGAMFELGQLYEDPILE 429 Query: 369 GTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFR 428 +S QV CP CG N+ + RRC G +D +C+ Sbjct: 430 EAEAQRSKRSGEQVPCPKCGTMNSP-------------YARRCIG--KDALSPDGRCEEF 474 Query: 429 FRFKNC-----------PQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCS 477 F + C C +ND AR CR CD VL DP+ L + Sbjct: 475 FSYIRCGFDKHGIRIFDDGCGTKNDPTARYCRHCDHVLRDPNAALNERAYTDNEWA---D 531 Query: 478 GMSLQHGHDEKGEWLKITYY----DEDGADVSERFRLQTPAQ--RTAFEQLFIRPHTRTP 531 M + + GE + Y+ D +E F A + F+ + PH Sbjct: 532 VMDFKVQLTKDGEGILYRYWINRCDGKEGWANEVFYPYGGATHMKNMFKAKAVFPHLDDK 591 Query: 532 GIPLRWITAADILAQQAL---LRHPDFVVARMKGQYWQVREK 570 + + + + ++ P + R+ + + + Sbjct: 592 SMAGKILKCQNAKQFMMYSGLIKAPKRITHRINDKGRDIIHR 633 >UniRef50_B3H2F8 Type I restriction enzyme R protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B3H2F8_ACTP7 Length = 787 Score = 298 bits (762), Expect = 5e-79, Method: Composition-based stats. Identities = 91/454 (20%), Positives = 165/454 (36%), Gaps = 63/454 (13%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 R YQ+ A++ T+ + + ++V+ TG GK+ ++ + +VL LA Sbjct: 173 EPRYYQENAINLTIEAVAKGRNRILLVMATGTGKTYTAFQIIHRLKASGAKRKVLFLADR 232 Query: 59 KELVAQ-NHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA------FQGEF 111 LV Q ++ + + K+ +S +V Q + D F Sbjct: 233 NVLVDQPMTQDFKPF--KDKMVKVSNKKLDSSFEVYLALYQQLDGETDNELFKQFQPSFF 290 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DECHR E+S ++ IL + + +G+TATP Sbjct: 291 DLIIIDECHRGSAKEDSNWRAILNYFNEATH----IGMTATPKETADASNI--------- 337 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDM----------PVVQYDFSRLQAQSNGL 221 + F D IY L+ I+ G+L P + + P + + L Sbjct: 338 ----SYFGDPIYTYSLKQSIEDGFLAPYRVIRVDLDCDLKGWRPTKGLTDKNGELVEDRL 393 Query: 222 FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL 279 ++ D + + R + I++ ++ ++F A + HA+ +V L +A + Sbjct: 394 YTIKDFDYNIILNDRTCLVAERITEFLKKTNRLDKTIVFCANINHAQRMVAELSRLNADM 453 Query: 280 ----------ITGDTPGAERDVLIENFKA-----QRFRYL-VNVAVLTTGFDAPHVDLIA 323 ITGD G + +E F + + V ++TTG D+ L+ Sbjct: 454 LAKNPKYIRQITGDQTGK--NDDLEAFCDVQNEGNAYPVIAVTSKLMTTGVDSKTCKLVV 511 Query: 324 ILRPTESVSLYQQIVGRGLRLA--PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 + +S++ ++QI+GRG RL GK ILD+ G P +P Sbjct: 512 LDANIQSMTEFKQIIGRGTRLRTDAGKEFFTILDFRGVTRLFADPAFDGDPVAILELPEN 571 Query: 382 VFCPACGFANTFWGKTTADGTLIEHFGRRCQGWF 415 + + E G Sbjct: 572 KPFDDKENNEKNNRTSKPTDQVKEDGGEYKPAIV 605 >UniRef50_C0E6A8 Putative uncharacterized protein n=1 Tax=Corynebacterium matruchotii ATCC 33806 RepID=C0E6A8_9CORY Length = 1158 Score = 298 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 93/425 (21%), Positives = 149/425 (35%), Gaps = 70/425 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 RPYQ + A F A++V+ TG GK+ L + VL LA K Sbjct: 393 RPYQITMLQAVAERFGAGHRRALLVMATGTGKTRTAIALVKQLAQAGWVKNVLFLADRKS 452 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG--EFSLLIVDE 118 LV Q + + + L+ + G+V + Q++ + L + G +F L+IVDE Sbjct: 453 LVKQAAEAFSEHLRDMPVVDL-LRNQHGTGQVYCSTYQTMMKLLGSRFGTYQFDLIIVDE 511 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR +Y +I + + LLGLTATP Y Sbjct: 512 AHR---SIYRRYSRIFDYFDSL-----LLGLTATPRCDVDHNTYALFQLND--------- 554 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMP------------------------VVQYDFSRL 214 L + GYL P + D L Sbjct: 555 GQPTANYSLDEAVDEGYLVPFKAFQCSSVILRDGVAYKDLSPEEQQQWENQDWGIDDDGL 614 Query: 215 QAQSNGLFSEADLNRELKKQQRITPHIISQI-----MEFAATRKGVMIFAATVEHAKEIV 269 ++N +L + I + + + A + F + +HA+ + Sbjct: 615 PLDIPLEVESEEINLKLYNKDTIRKVVGQVLCHGIKVAGADRIGKTIFFTRSKKHAQLVC 674 Query: 270 GLLPAED----AALITGDTPGAERDVLIENFKA---QRFRYLVNVAVLTTGFDAPHVDLI 322 ++ + AA+IT + + LI+ FKA ++V +L TG D P V + Sbjct: 675 DIIHETNPQVRAAVITHEVYDS--LDLIDRFKASGKGSLDVAISVDMLDTGVDVPAVVNL 732 Query: 323 AILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKS 375 +P S + + Q++GRG RLAP K + + DY N E S Sbjct: 733 VFFKPVYSNTKFWQMIGRGTRLAPNLFGKGLDKREFYVFDYCDNLRRFEDAEHIVSTTGS 792 Query: 376 DNVPV 380 P+ Sbjct: 793 QQRPL 797 >UniRef50_C4LDI1 Type III restriction protein res subunit n=4 Tax=Gammaproteobacteria RepID=C4LDI1_TOLAT Length = 1123 Score = 298 bits (762), Expect = 6e-79, Method: Composition-based stats. Identities = 97/443 (21%), Positives = 152/443 (34%), Gaps = 69/443 (15%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVKE 60 RPYQ EA+ + N F+ + +IV TG GK+ V L L RVL L KE Sbjct: 353 RPYQIEAIKSVTNRFQNQRRQTLIVQATGTGKTRVSIALVALLLKARWVKRVLFLCDRKE 412 Query: 61 LVAQNHAKYQ-ALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q ++ L E R + ++ + + G F L+I DE Sbjct: 413 LRRQADDAFKLHLASEPRCVVGESNRIDQSARIFVATYPGMMNRFSQLDVGFFDLIIADE 472 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR ++Y+ I + + +GLTATP + + Sbjct: 473 SHR---SIYNKYRDIFDYFDALQ-----VGLTATPVKFIARNTFDLFGCEN--------- 515 Query: 179 RDCIYELPLRYMIKH--GYLTPPERLDMPVV------------------QYDFSRLQAQS 218 D + L I H YL P + + + Sbjct: 516 GDPTFNFDLAEAIAHEPRYLNPFRVKEFTTEFLRDGIHYKDLTPEQREQLEEDLGAEEAQ 575 Query: 219 NGLFSEADLNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAKEIVGLL 272 N F ++ +++ I+ +M +IFA + EHA+ + + Sbjct: 576 NVHFKGKEIGKKIFSAST-DCQILENLMTNGIKDATQSLVGKTIIFAQSQEHAEHLESMF 634 Query: 273 PAED-------AALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAPHVDLIA 323 +I E I+ FK+ FR ++V +L TG D P V + Sbjct: 635 VKLYPQYGTKVCKVIHNKVDRPEAR--IDEFKSPDNPFRIAISVDMLDTGIDVPEVVNLV 692 Query: 324 ILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 RP +S + Q++GRG RL K + LI D+ GN S Sbjct: 693 FARPVKSWVKFWQMIGRGTRLCENLFGPGKDKEEFLIFDHYGNFKYFDEEYTEAEVVASR 752 Query: 377 NVPVQVFCPACGFANTFWGKTTA 399 ++ VF A+T KT+ Sbjct: 753 SLLQTVFEARLTLADTAMKKTSV 775 >UniRef50_A6W081 Type III restriction protein res subunit n=3 Tax=Gammaproteobacteria RepID=A6W081_MARMS Length = 1133 Score = 297 bits (760), Expect = 9e-79, Method: Composition-based stats. Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 71/428 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVKE 60 R YQ A+ + + F+ + A+I+ TG GK+ V LA L RVL L KE Sbjct: 364 RLYQINAIKSVAHTFQEQRRKALIIQATGTGKTRVSIALADLMLNAGWAKRVLFLCDRKE 423 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRK-ESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q ++ G K + + ++ + + G F L+I DE Sbjct: 424 LRTQASEAFKNNLPSEPRCEIGETNKIDENARIYVSTYPGMMNRFAQLDVGFFDLIIADE 483 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR ++Y+ I + + +GLTATP + + Sbjct: 484 SHR---SIYNRYRDIFDYFDALQ-----VGLTATPVKFISRNTFDMFGCETT-------- 527 Query: 179 RDCIYELPLRYMIKHG--YLTPPERLDMPVV------------------QYDFSRLQAQS 218 D Y+ L+ I+H YL + D+ D Sbjct: 528 -DPTYQFGLKEAIEHEPPYLVDFKVKDVTTEFLRDGIHYNDLTDDQKRQLEDDLGFDEAQ 586 Query: 219 NGLFSEADLNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAKEIVGLL 272 N + D+ R++ ++ I+ +M + ++FA +HA+ + L Sbjct: 587 NASYQGKDIGRKIFSEKT-DQEILENLMNYGIKDETNSLVGKTIVFANNQKHAEHLEKLF 645 Query: 273 PAED-------AALITGDTPGAERDVLIENFKAQ--RFRYLVNVAVLTTGFDAPHVDLIA 323 +I E LI+ FK FR ++V +L TG D P V + Sbjct: 646 CKLYPQYGNKVCKVIHNKVSHVE--SLIKEFKKGDNEFRIAISVDMLDTGIDVPEVVNLV 703 Query: 324 ILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKSD 376 + +S + Q++GRG RL KT+ LI D+ GN + Sbjct: 704 FAKTVKSSVKFWQMIGRGTRLCKNLFGKGKDKTEFLIFDHYGNFEFF--EQEYKEPQDVG 761 Query: 377 NVPVQVFC 384 P+ C Sbjct: 762 GKPLLQTC 769 >UniRef50_A6TLK4 Type III restriction protein, res subunit n=3 Tax=Clostridiaceae RepID=A6TLK4_ALKMQ Length = 1086 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 96/493 (19%), Positives = 163/493 (33%), Gaps = 96/493 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAH 57 LR YQ +A++A K A++ + TG GK+ + + R+L L Sbjct: 375 LNLREYQIDAIEAAEKAIIEGKQTALLSMATGTGKTRTVLGMIYRFLKTGRFKRILFLVD 434 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q ++ + LE +I + + K+ +VQS+ + + Q Sbjct: 435 RSALGEQAQDVFKEVKLEDLMTLDEIYNIKNLEDRMIDKETKIQVATVQSLVKRILDNQD 494 Query: 110 -------EFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRL 146 ++ L+++DE HR DD S+Y+ ++ + V Sbjct: 495 ETMPSIIDYDLIVIDEAHRGYILDKEMDEDEILYRNQDDYISKYRAVIEYFDSVK----- 549 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV 206 + LTATP +F +Y R + GYL + V Sbjct: 550 IALTATP-----------------ALHTSEIFGKPVYNYTYREAVVEGYLVDHDAPHTIV 592 Query: 207 VQYDFSRLQAQSNG----------------------LFSEADLNRELKKQQRITPHIISQ 244 + + + F NR++ + +I Sbjct: 593 TKLSKEGINYEKGETVAIYDPVTGEIMNSDELEDELKFDVEKFNRQVITESFNRTVLIEI 652 Query: 245 IMEFAATR-KGVMIFAATVEHAKEIVGLLPAED---------AALITGDTPGAERDVLIE 294 E +I+A HA IV +L ITG G + ++E Sbjct: 653 SKELDPEGEGKTLIYAVDDSHADLIVKILKEIFEPYGVDNDAIMKITGSVGGGNKKKVLE 712 Query: 295 ---NFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GK 348 FK +++ V V +LTTG D P + + +R +S L++Q++GR RL P GK Sbjct: 713 AVKRFKNEKYPNIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMMGRATRLCPEIGK 772 Query: 349 TDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFG 408 T I D G L P + + + T +I Sbjct: 773 THFEIYDPIGVYESLQPVNTMKPVVANPSTSFEDLLTGLEVLPTEKQIKNQIDMIIAKLQ 832 Query: 409 RRCQGWFEDDDGH 421 R+ + E H Sbjct: 833 RKKRSMNEKTMAH 845 >UniRef50_C6Q0A8 Type III restriction protein res subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0A8_9CLOT Length = 1102 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 99/456 (21%), Positives = 161/456 (35%), Gaps = 63/456 (13%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 RPYQ E + ++ + A++V+ TG GK+ + L + RVL LA E Sbjct: 341 RPYQIEGIKRVYERYQNGQRKALLVMATGTGKTRTVIALTKGLMEASWAKRVLFLADRDE 400 Query: 61 LVAQNHA---KYQALGLE-ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLI 115 LV Q ++ E G + F + Q++ F G F L+I Sbjct: 401 LVKQAKEDKNSFKTFMPEQISCRFTGKNSDNREATLYFSTYQTMVNYYREFSVGFFDLII 460 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATP----FR--------LGKGWIYQ 163 DE HR Y+ IL + ++GLTATP R + Sbjct: 461 CDESHR---SVYKVYRDILEYFDS-----HIVGLTATPVNFIERNTFSLFSCEDGDPTFN 512 Query: 164 FHYHGMVRGDEKALFRDCIYELP---LRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNG 220 F L + + LR IK+ +T +R + YD + Sbjct: 513 FSVEDAWNHVPPYLIEPRVIDATTDFLRKGIKYNEMTEEQRQQVDEEGYDGQEIN----- 567 Query: 221 LFSEADLNRELKKQQRITPHIISQIMEFAAT----RKGVMIFAATVEHAKEIVGLLPAED 276 + + +L +++ + +I+ +ME +IFA +HA + L Sbjct: 568 -YDKKELEKKITNKDT-NRYILRTLMEQGIKVGDYIGKTIIFAKNKKHANLLDSLFNELY 625 Query: 277 -------AALITGDTPGAERDVLIENFKAQR-FRYLVNVAVLTTGFDAPHVDLIAILRPT 328 A+I + ++ VLIENFK + R ++V +L TG D P + + +P Sbjct: 626 PQYKGKLTAVIYSE--IKDKSVLIENFKDKDFPRIAISVDLLDTGIDIPEIVNLVFAKPV 683 Query: 329 ESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 S + Q++GRG R K + I D N G Sbjct: 684 YSKVKFWQMIGRGTRRCDNLFGEGQDKKEFAIFDCYKNFEFFEMHPKGYEPKPQKTSLQV 743 Query: 382 VFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFED 417 F C + K D + E F + + E+ Sbjct: 744 RFEITCKLLEKYKAKRNLD--ICEAFAAKLKADIEE 777 >UniRef50_B1VEN8 Type I restriction-modification system, restriction subunit n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VEN8_CORU7 Length = 1226 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 102/428 (23%), Positives = 157/428 (36%), Gaps = 81/428 (18%) Query: 6 RPYQQEAVDATLNHFRRH-KTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQQE + F K A++V+ TG GK+ V A+L R G+VL LA Sbjct: 424 RDYQQEMIRRVTEAFESQLKRRALLVMATGTGKTRVAIATAKLLRQANWVGKVLFLADRT 483 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-------FQG-EF 111 LV Q H + L ++ L+ E G V + Q++ +D F+ +F Sbjct: 484 ALVDQAHDNFVDLYPDSAPVNL-LREPEGTGGVYVSTYQTMMGLIDDDGEHPAAFRPFDF 542 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DE HR ++++IL + +LGLTATP YQ Sbjct: 543 DLIIIDEAHR---SIYHRFKRILDYFDA-----YVLGLTATPRAEVTHNTYQLFDIEDKT 594 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERL---------DMPVVQYDFSR------LQA 216 L I+ YL PP+ L + D + Sbjct: 595 PTG---------SYTLEQAIEDKYLVPPQVLAQDSLFLRSGVRYEDLDEEEQLLWDAAEW 645 Query: 217 QSNGL---------FSEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAAT 261 ++ + A++N L + I ++ ++E +IFA T Sbjct: 646 GTDEDGNPLDPPDGVTAAEINSRLYNRDTIRG-VLRTLVEQGIKVEGGDRLGKTIIFART 704 Query: 262 VEHAKEIVGLL-------PAEDAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVLTT 312 HA+ I L E AA+IT T A ++ FK ++V +L T Sbjct: 705 QRHAELINEELGRCFPQQAGERAAVITHSTRYA--AEELKRFKNPAGTLDIAISVDMLDT 762 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYA 365 G D P V + +P S + + Q++GRG RL K + D+ GN Sbjct: 763 GVDVPEVVNLVFFKPVYSATKFWQMMGRGTRLRRDLFGENLHKDKFRVFDFCGNVRFFTE 822 Query: 366 PEVGTPKG 373 P Sbjct: 823 QLTEEPGV 830 >UniRef50_Q597S9 Putative helicase n=1 Tax=Lactobacillus phage phiJL-1 RepID=Q597S9_9CAUD Length = 467 Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats. Identities = 110/484 (22%), Positives = 184/484 (38%), Gaps = 91/484 (18%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL---ARGRVLVLAHV 58 +F L YQQ VD T N R+ +IV P G+GKS++I E+ RL + RVL H Sbjct: 1 MFKLYDYQQRIVDETRNKLRQGNKGVLIVSPPGSGKSVIIGEITRLTTLKKNRVLFTVHR 60 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 +ELV Q + A+G+ D +V V LD + + L+IVDE Sbjct: 61 QELVDQITDTFDAMGVNQDYT-------------TVMTVGRVKNRLDKLE-KPDLIIVDE 106 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 Y IL + + + LG + +P+R+ ++ Sbjct: 107 SQHT---RAKTYTDILDYYS----DVPRLGFSGSPWRMNGQGFDD-------------IY 146 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + ++++I + +L P ++ + NG + + ++ L + I Sbjct: 147 PAMVEGPSVKWLIDNYHLAPFTYYAPQTLE-----GFKKRNGEYDKKSVDEVLGSK--IF 199 Query: 239 PHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENF 296 +S + A K +++A +VE+AK+ AA + G TP AERD +I +F Sbjct: 200 GDAVSSYLSNA-NGKQAILYAHSVEYAKKYAVAFEEAGVNAASVDGKTPKAERDRIINDF 258 Query: 297 KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDY 356 ++ + + L N +++ GFD P+ +++ + RPT S+ LY Q R +R GK +I+D+ Sbjct: 259 RSGKLKVLCNNDLISEGFDVPNCEVVIMCRPTASLVLYLQQSMRCMRYVNGKQ-AMIIDH 317 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 GN P+ D GR G + Sbjct: 318 VGNYVRFGLPD--------------------------------DDRQWSLSGRNSNGKVD 345 Query: 417 DDDGHREQCDFRFRF-------KNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLK 469 D H C ++ CP C A R E + + K Sbjct: 346 APDIH--TCQHCYQVFYEWTADNRCPYCGELKPEADPRTAEGKKQIEQ--AKMIEIANRK 401 Query: 470 DALV 473 Sbjct: 402 VEKS 405 >UniRef50_B1Y673 EcoEI R domain protein n=12 Tax=Bacteria RepID=B1Y673_LEPCP Length = 824 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 96/462 (20%), Positives = 176/462 (38%), Gaps = 84/462 (18%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 T R YQ A++ T+ + + A++V+ TG GK+ ++ + R+L LA Sbjct: 165 TPRYYQLNAINRTVEAIAQGRQRALLVMATGTGKTYTAFQIIWRLWKSCAKKRILFLADR 224 Query: 59 KELVAQNH-AKYQ-----------------------ALGLEADIFAAGLKRK--ESHGKV 92 L+ Q ++ +G+E A K ++ ++ Sbjct: 225 NILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGRVGVEDVTLAVNRTTKQVDTSYEI 284 Query: 93 VFGSVQSV------ARNLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 Q+V + F + F L+IVDECHR E+S +++IL++ + Sbjct: 285 YLSLYQAVTGTSDESNIYKQFSPDFFDLIIVDECHRGSAAEDSSWREILSYFSSATQ--- 341 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 +GLTATP + F + IY L+ I+ GYL P + + + Sbjct: 342 -VGLTATPKETQDVSNSDY-------------FGEPIYTYSLKQGIEDGYLAPYKVVRID 387 Query: 206 VVQYDFSRLQAQSNGL----------FSEADLNRELK--KQQRITPHIISQIMEFAATRK 253 + + F + ++ AD+NR L ++ + I++ ++ Sbjct: 388 LDRDTFGWRPTEGMTDKLGNLIEDRVYTGADMNRRLVLERRDEVVAAKITEYLKATDREA 447 Query: 254 GVMIFAATVEHAKEIVGLLPAEDAAL----------ITGDTPGAERDVLIENFKAQR--- 300 ++F ++HA + L +A + ITGD P +R+ ++NF Sbjct: 448 KTIVFCEDIDHAARMRQALSNANADICQTQPRYVVQITGDNPEGKRE--LDNFIDPEKTY 505 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAG 358 +++TG DA LI + + +S++L++QI+GRG RL GKT ILD+ Sbjct: 506 PVIATTSKLMSTGVDAQTCKLIVLDQNIKSMTLFKQIIGRGTRLREDLGKTWFTILDFKR 565 Query: 359 NPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD 400 + + A+ D Sbjct: 566 ATELFADKDFDGEPVQVYEPKGDEPVEPPEVADPGDPAGQPD 607 >UniRef50_B8CZR6 EcoEI R domain protein n=5 Tax=Firmicutes RepID=B8CZR6_HALOH Length = 770 Score = 296 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 97/447 (21%), Positives = 163/447 (36%), Gaps = 64/447 (14%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 T R YQ+ A++ + + + ++V+ TG GK+ ++ + R+L LA Sbjct: 159 TPRYYQRVAINRAVEAIAKGQKRILLVMATGTGKTFTAFQIIHRLWKAGKKKRILFLADR 218 Query: 59 KELVAQNH-AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA------RNLDAFQGE- 110 LV Q + G + ++ QS+ + + + + Sbjct: 219 NILVDQTITGDFSPFG--DKMIKIQRGNVSHAHEIYLALYQSMTGPEEWQKTFEEYSPDF 276 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+++DECHR S ++ +L + + LGLTATP Sbjct: 277 FDLVVIDECHRGSARANSAWRVVLEYFDQATH----LGLTATPK-------------EDA 319 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM----------PVVQYDFSRLQAQSNG 220 + F + IY L+ I+ G+L P + + M P+ + + Sbjct: 320 DVSTQGYFGEPIYTYSLKQGIEDGFLAPYKVVRMGLDKDLMGFRPIKGQTDKYGRVMEDR 379 Query: 221 LFSEADLNRELKKQQR---ITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGLLPAED 276 + D +REL ++R + I + E R ++F +EHA+ + L E+ Sbjct: 380 EYYVNDFDRELILEKRHELVAKEITRYLKEELQDRFAKTIVFCQDIEHAENMRQALVNEN 439 Query: 277 AAL----------ITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDLIA 323 A L ITGD P E + ++NF ++TTG DA LI Sbjct: 440 ADLVKQNYKYVMRITGDNP--EAKIQLDNFIEPSETYPVIATTSKLMTTGVDAQTCKLIV 497 Query: 324 ILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 + S+S ++QI+GRG RL P GK ILD+ G P+ D Sbjct: 498 LDMTINSMSEFKQIIGRGTRLRPDYGKYYFTILDFRGATRLFADPDFDGYPIPDDEDGDN 557 Query: 382 VF-CPACGFANTFWGKTTADGTLIEHF 407 G D + Sbjct: 558 YPGNDVNGGNRIPGNDEGGDEEGRVKY 584 >UniRef50_D1W5U0 DEAD/DEAH box helicase n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5U0_9BACT Length = 786 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 93/467 (19%), Positives = 171/467 (36%), Gaps = 62/467 (13%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLA 56 IF R YQ+ A++ T+N + ++ ++V+ TG GK+ ++ + +VL LA Sbjct: 166 IFPPRYYQRNAINRTVNAIAKGQSRVLLVMATGTGKTYTAFQIVWRLLHSKLKKKVLYLA 225 Query: 57 HVKELVAQNHAK----YQALGLEADIFAAGLK-RKESHGKVVFGSVQSVARNLDA----- 106 LV Q+ + + + + D + S +V F Q + DA Sbjct: 226 DRNILVDQSIQQDFNPLKKVTHKIDYSKDKNHLEELSSYQVFFALYQQLIGQNDAKNYQE 285 Query: 107 ---FQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQ 163 F L+IVDECHR ++S ++ IL + + +G+TATP Sbjct: 286 LFPNPDYFDLVIVDECHRGSAKDDSNWRNILDYFSSATH----IGMTATPK--------- 332 Query: 164 FHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV---VQYDFSRLQAQSNG 220 F + IY L+ I+ G+L P + +++ ++ ++ Q +G Sbjct: 333 ----ETKYQSSIGYFGEPIYTYSLKNGIEDGFLAPFKVINITTNIGDEWRPTKGQKDIHG 388 Query: 221 ------LFSEADLNRELKKQQRI--TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL 272 +++ +D + + + RI I+ ++ ++F A HA+ + L Sbjct: 389 NEIEDRIYNNSDYDYNIVIEDRIREVAQEITNYLKSTDRMAKTIVFCADETHAERMRMAL 448 Query: 273 PAEDAALITGDTPGAERDVLIENFKAQRFR-----------YLVNVAVLTTGFDAPHVDL 321 +A + + R + + + +L+TG D L Sbjct: 449 TNANADMCKKNPDYVVRITGSDEYGKSKLDYFISVAEKYPVIATTSKLLSTGVDCKMTKL 508 Query: 322 IAILRPTESVSLYQQIVGRGLRL--APGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 I + + S++ ++QI+GRG RL GKT ++D+ PE P N P Sbjct: 509 IVLDQQIGSMTEFKQIIGRGTRLREKEGKTYFTVMDFRNVTRLFADPEWDGPIEIDPNYP 568 Query: 380 VQVFCPA---CGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHRE 423 + P N G D G Sbjct: 569 PKEKEPTPYLPPEENEPTGVKEPDPAPQPKPIVAKDGCQVMIINKVV 615 >UniRef50_D1XTB5 Type III restriction protein res subunit n=2 Tax=Streptomyces RepID=D1XTB5_9ACTO Length = 1153 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 92/474 (19%), Positives = 162/474 (34%), Gaps = 77/474 (16%) Query: 6 RPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVK 59 R YQ A+ + F + A++V+ TG+GK+ + L+ L R+L LA K Sbjct: 358 RHYQSRAIRRIADSFEKDSLRQALLVMATGSGKTRTVISLSDLMMRANWAKRILFLADRK 417 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE--------- 110 LV Q +++ A+ L+ K+ H +V + ++ +D + Sbjct: 418 ALVKQATNEFKKHLPGANPVNL-LEEKDPHSRVFVSTYPTMMNLIDQTDADGRRIFGPGF 476 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F L+++DE HR +Y I + + L+GLTATP Y+ Sbjct: 477 FDLIVIDEAHR---SIYQRYGAIFDYFDSL-----LVGLTATPKDEVDRNTYRRFELED- 527 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP---------------VVQYDFSRLQ 215 L + GYL P +D+P + + + Sbjct: 528 --------GVPTDVYSLDEAVAEGYLVAPRAVDVPLKFQRGGIKYDDLSEEDKEKWDETE 579 Query: 216 AQSNGL----FSEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHA 265 +G + +LN+ L + ++ +M ++FAA HA Sbjct: 580 WNEDGDVPDEITTEELNKYLFNADTV-DKVLQTLMTHGLKVDGGDKLGKTIVFAANNNHA 638 Query: 266 KEIVGLL-------PAEDAALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDA 316 + I A +IT A+ LI+ F + ++V +L TG D Sbjct: 639 EFIAERFDKNYPHLKGAFAQVITYRKEYAQ--SLIDKFSDAAELPQIAISVDMLDTGIDV 696 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVG 369 P V + + S + + Q++GRG RLAP K L+ D N + Sbjct: 697 PEVVNLVFFKLVRSKTKFWQMIGRGTRLAPDLFGPNRSKDGFLVFDLCQNIEFFNQNLMR 756 Query: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHRE 423 + ++ ++F + D R + D Sbjct: 757 AEGKVAPSLSQRIFERRADLLLALDDSSARDHQAAAVIATRPESDGTVSDSGLR 810 >UniRef50_C2KJC2 Helicase n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KJC2_LEUMC Length = 515 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 101/535 (18%), Positives = 185/535 (34%), Gaps = 86/535 (16%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAH 57 M F L YQ + + ++V G+GK+ +++E+ARL RV V+AH Sbjct: 1 MPFQLYDYQNKLLSEARQSLANGSKSVMVVSAAGSGKTAMMSEMARLTTSHHKRVWVMAH 60 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVD 117 KEL+ Q ++ ++ + V +V ++ ++ L+I D Sbjct: 61 RKELINQIRDSFKFNEIDFEYA-------------VIKTVGTMVHRMNNMAPP-DLIIFD 106 Query: 118 ECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKAL 177 E H + Y+++ P + +G TATP R+ + Sbjct: 107 EAHH---SIANTYRKVRDKF----PDVPTIGFTATPCRMSGVGFTD-------------M 146 Query: 178 FRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRI 237 + D + + ++I+H L P + D ++++ S G + ++ + + Sbjct: 147 YDDIVTGPSIPWLIEHDKLAPFDYYVPTF--IDINKIKFNSAGNATADSMHEAVGDELAT 204 Query: 238 TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAA--LITGDTPGAERDVLIEN 295 I Q + A + + + +V+ + IV L I TP RD +++ Sbjct: 205 LNSIYDQW-KLLAEHEKTITYMYSVDSSHAIVDLFNQNGVPSAHIDSKTPKVIRDKAMQD 263 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILD 355 F+ + + L N + G + P + + RPT+S+ Y Q R +R P K LILD Sbjct: 264 FRDGKLQMLSNYELYGEGVNIPDATTVIMARPTKSLVFYIQAGMRSMRYQPNKK-ALILD 322 Query: 356 YAGNPHDLYAPEVG----------TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 + GN + P+ K D C C TF+ D Sbjct: 323 FVGNVNRFGLPDYDHDWEEYFKGTKKKKSGDFEAPVSTCDNC--FATFYSNEWVD----V 376 Query: 406 HFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE--CDTVLVDPDDM-- 461 H G ++DG ++K CP C + R + D L D+ Sbjct: 377 HSGT-------NEDGKET------KYKTCPYCGEVTETVVERADKKAVDIKLSKVTDLDE 423 Query: 462 --------LKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF 508 L + + EK + + + + Sbjct: 424 FEKNRLAGLSVRQAKTPMQKYKILQSRYELKLREKDGYFATIFMTP--VWKEDWY 476 >UniRef50_C8X332 Type III restriction protein res subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X332_DESRD Length = 979 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 78/369 (21%), Positives = 158/369 (42%), Gaps = 38/369 (10%) Query: 9 QQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAE-LARLARGRVLVLAHVKELVAQNHA 67 Q EA++ L R ++ TG GK+ + A + + + L +AH ++++ + Sbjct: 366 QGEALEGLLKLRNRKARSGAVIAATGVGKTYLAAFDFIQSGKDKCLFIAHREDILRKAKE 425 Query: 68 KYQALGLEAD--IFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLIVDECHRI 122 + + IF+ K + VF +Q++ R N++ F EF +++DE H Sbjct: 426 SFSHVLGPEGLEIFSGRSKEISHGSRAVFAMIQTLGRQDNMERFHPEEFDYIVMDEFHHA 485 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 + Y+++L + LLGLTATP R+ + + + Sbjct: 486 ---MAATYRRVLDYFQPDF----LLGLTATPERMDGRDVLWLCDY------------NIA 526 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 YE+ L I L P + + D++++ + + + +L + L T I Sbjct: 527 YEMRLFQAIDKELLAPFQYFAVHDPT-DYAQISWKRT-DYDQEELTKALA-NDTRTTIIA 583 Query: 243 SQIMEFAATRKGV--MIFAATVEHAKEIVGLLPAED---AALITGDTPGAERDVLIENFK 297 + + +F + + + F ++V+HA+ L E A + GD+ +R+ + + Sbjct: 584 NNLKKFLPYQGKIKALAFCSSVDHAQYTAARLTQEHDFEAMALVGDSSQDQREEAVARLE 643 Query: 298 --AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKT---DCL 352 + + V + G D P + + +LRPT+S +++ Q +GRGLR + + Sbjct: 644 EENDPLKLICCVDIFNEGIDIPKLSHVLLLRPTQSFTVFLQQLGRGLRKIQSEDVEKHLV 703 Query: 353 ILDYAGNPH 361 ++D+ GN Sbjct: 704 VIDFVGNFR 712 >UniRef50_A4VH90 Type I restriction-modification system, R subunit n=2 Tax=Gammaproteobacteria RepID=A4VH90_PSEU5 Length = 1157 Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats. Identities = 98/475 (20%), Positives = 153/475 (32%), Gaps = 95/475 (20%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-----RLARGRVLVLAH 57 LR YQ++AV ++ ++ + TG GK+ I L R+L L Sbjct: 436 LKLRDYQEKAVQTVEQALANNQRDCLLAMATGTGKTRTIIGLMYRFLKAERFKRILFLVD 495 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ- 108 L Q + LE DI G E+ +V +VQ++ + Sbjct: 496 RSALGQQAIDSFNDTTLEQNHTLAQIYDIKELGDMAAEAETRVQVATVQAMVSRIFRSDT 555 Query: 109 ----GEFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRLLG 148 GEF +IVDE HR SQY+++L H +G Sbjct: 556 PPPVGEFDCIIVDEAHRGYTLDQEMTEGELAVRDHSQYLSQYRRVLDHFDA-----CRIG 610 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ 208 LTATP +F ++ R + +L E Q Sbjct: 611 LTATP-----------------AKHTSEIFGKPVFTYSYREAVADDWLVDHEPPIRYETQ 653 Query: 209 YDFSRLQAQSN----------GLFSEADLNRELKKQ----------QRITPHIISQIMEF 248 ++ + G A+L EL I ++ + Sbjct: 654 LSQHGIRFEKGESVSVINTQTGEVDVAELEDELTFNIESFNRRVITPAFDKVICDELAKE 713 Query: 249 AA--TRKGVMIFAATVEHAKEIVGLL------------PAEDAALITGDTPGAERDVLIE 294 + MIF HA+ + LL +ITG + E LI Sbjct: 714 LDPFGEEKTMIFCVNQAHAERVKNLLDEAFKTAYGEQYNEAAVRIITGQSDKVE--QLIR 771 Query: 295 NFKAQ-RFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 +K + + V +LTTG D P + + +R S LY+Q+ GR R GKT Sbjct: 772 RYKNEPNPNIAITVDLLTTGIDVPKICNLVFMRRVRSRILYEQMKGRATRRCDDIGKTVF 831 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 I D L A + P K+ N+ ++ + + D + H Sbjct: 832 RIYDPVDLYASLEAVDTMKPLVKNPNISLEQLVSELASGASHDAPGSQDDSSHAH 886 >UniRef50_B2IMB0 Type I restriction-modification system, R subunit n=31 Tax=Bacteria RepID=B2IMB0_STRPS Length = 777 Score = 294 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 93/448 (20%), Positives = 171/448 (38%), Gaps = 65/448 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLA 56 + T R YQQ A++ T+ R + + V+ TG GK+ + ++ R RVL LA Sbjct: 166 MKTPRYYQQIAINRTIETVARGQKRVMFVMATGTGKTFMAFQIIHRLRKAGLAKRVLFLA 225 Query: 57 HVKELVAQNHAK----YQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR------NLDA 106 LV Q A+ ++ + + K + ++ G Q + + Sbjct: 226 DRNILVDQTMAEDFKPFEKVMTKITPKLLTAPEKLNSFEIYLGLYQQLTGEDGTETHYQK 285 Query: 107 FQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH 165 F + F L+++DE HR E S +++++ + + +G+TATP Sbjct: 286 FDKDFFDLIVIDEAHRGSAKENSNWRKVIDYFSSATQ----IGMTATPK----------- 330 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPER----LDMPVVQYDFSRLQAQSNGL 221 F + IY L+ I+ G+L P LD+ V Y + +NG Sbjct: 331 --ETKNASNTEYFGEPIYTYSLKQGIEDGFLAPYRVMRVNLDVDVDGYRPETGKVDANGQ 388 Query: 222 ------FSEADLNRELKKQQR--ITPHIISQIMEFAATR-KGVMIFAATVEHAKEIVGLL 272 + D ++ + R +S M+ R ++F ++HA+ + L Sbjct: 389 LIEDRYYGRKDFDKTIVIDDRTQRVAKFVSDYMKQNNARFDKTIVFCVDIDHAERMRAAL 448 Query: 273 PAEDAALI--------TGDTPGAERDVLIENF---KAQRFRYLVNVAVLTTGFDAPHVDL 321 E+ L+ AE ++NF + + +LTTG +A L Sbjct: 449 VKENLDLVQEDYRYVMQVTGDNAEGKAQLDNFMDVNSNFPAIVTTSKLLTTGVNAKTCRL 508 Query: 322 IAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 I + +S++ ++QI+GRG RL P GK I+D+ + + K Sbjct: 509 IVLDSNIQSMTEFKQIIGRGTRLYPQKGKEFFTIIDFRNVTNLFADSDFDGEPVKVLETG 568 Query: 380 VQVFCPACGFANTFWGKTTADGTLIEHF 407 + + + G +G +E + Sbjct: 569 AKTV------SGSTPGFVDEEGDPVEKY 590 >UniRef50_B3CDF9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3CDF9_9BACE Length = 1116 Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 90/441 (20%), Positives = 154/441 (34%), Gaps = 79/441 (17%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAH 57 T R YQ+ +++ H+ A++V+ TG GK+ V L + VL LA Sbjct: 344 ITNRNYQKRVIESVCKHYNDKHRRALLVMATGTGKTRVSISLVDVLVRNNWVKNVLFLAD 403 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-----FQGEFS 112 ELV Q L + + + +++F + Q++ +LD G F Sbjct: 404 RIELVNQAKKNDTKLLPNMTVSSLRDSDVDISARILFSTYQTMIGHLDRDAKTFSLGRFD 463 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+I+DE HR +Y I + + LLGLTATP Y Sbjct: 464 LIIIDEAHR---SVFGKYGAIFEYFDCL-----LLGLTATPRDEVDRSTYDLFGMEQ--- 512 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLD----MPVVQYDFSRLQAQSNGLFSE---- 224 + + GYL P + + D +L + E Sbjct: 513 ------GEPTDSYEYDEAVADGYLNPFRAIKDNSKILTTGIDPEQLTPEERKQLEEIFEY 566 Query: 225 -------------------ADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFA 259 ++ + + Q + H+++++M K +IFA Sbjct: 567 EKMKAGLEPDDPYSRTINATEIFKYIFNQNTV-DHVLNRLMNDGIRVKDNTLIGKTIIFA 625 Query: 260 ATVEHAKEIVGLLPA-------EDAALITGDTPGAERDVLIENFKA--QRFRYLVNVAVL 310 +HA I A + +I + L++ F ++ + V+V +L Sbjct: 626 YNHKHAVFIAERFAALYPDLGSDFCRVIDNYEKYS--SDLLDKFADVSKQPQIAVSVDML 683 Query: 311 TTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDL 363 TG D P + + +P S + Q++GRG RL K + LI D+ N Sbjct: 684 DTGIDVPEIVNLVFFKPIHSKIKFWQMIGRGTRLCENLFGEGQHKKEFLIFDFYRNFEYF 743 Query: 364 YAPEVGTPKGKSDNVPVQVFC 384 G KS ++ +F Sbjct: 744 EMHPEGARPTKSQSIVSLIFN 764 >UniRef50_Q7MPU7 Type I site-specific restriction-modification system, R (Restriction) subunit n=11 Tax=cellular organisms RepID=Q7MPU7_VIBVY Length = 817 Score = 294 bits (753), Expect = 6e-78, Method: Composition-based stats. Identities = 96/424 (22%), Positives = 164/424 (38%), Gaps = 68/424 (16%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA------------RG 50 ++ R YQQ A++ + + K ++I + TG GK++V +++ + Sbjct: 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKP 236 Query: 51 RVLVLAHVKELVAQNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARN------ 103 R+L LA LV K + G G + ++ F QS+A + Sbjct: 237 RILFLADRNVLVDDPKDKTFTPFGDARHKIEGG--KVVKSREIYFAIYQSIASDERRPGL 294 Query: 104 LDAFQGEF-SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIY 162 F +F L+I+DECHR + S +++IL + +G+TATP R Y Sbjct: 295 YKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQ----IGMTATPLREDNRDTY 350 Query: 163 QFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS---- 218 ++ F + IY LR I G+L P + + + D + + Sbjct: 351 RY-------------FGNPIYTYSLRQGIDDGFLAPYRVHRV-ISEVDAAGWRPSKGDVD 396 Query: 219 -------NGLFSEADLNRELKKQQRITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIV 269 +G + D R + + R ++ M+ ++F EHA E+ Sbjct: 397 RFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMR 456 Query: 270 GLLPAEDAAL----------ITGDTPGAERDVL--IENFKAQRFRYLVNVAVLTTGFDAP 317 L ++ L +T + + L + + L +LTTG DAP Sbjct: 457 RALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGN-PHDLYAPEVGTPKGK 374 + + R S+S ++QIVGRG RL GK I+DY G+ + P+ Sbjct: 517 TCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSATQNFADPDFDGYPEI 576 Query: 375 SDNV 378 D V Sbjct: 577 EDEV 580 >UniRef50_B4D2R4 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2R4_9BACT Length = 572 Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 113/394 (28%), Positives = 191/394 (48%), Gaps = 54/394 (13%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKEL 61 FTLR YQ A DA +++H++ + VLPTG GK+++ AE+ R + GR LV+AH +EL Sbjct: 4 FTLRDYQAAAADAVEEKWKKHQS-TLCVLPTGCGKTVLFAEIIRRRQPGRALVIAHREEL 62 Query: 62 VAQNHAKYQAL-GLEADIFAAG---LKRKESHGKVVFGSVQSVA-----RNLDAFQG-EF 111 + Q K +A+ GLEA++ A VV S+Q++ R ++ F+ +F Sbjct: 63 IVQAVKKIEAVTGLEAEVEMAEQVASNSLFHKTPVVVASIQTLVSGGNRRRMERFRPEDF 122 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 ++VDE H + Y+ +L + + N +LLG+TATP R + + Sbjct: 123 DTIVVDEFHHA---TAASYRAVLEYFLR-NEKAKLLGVTATPDRADQAALGL-------- 170 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 + ++ +R I G+L P E+ + + D+S++ + G + A+L + Sbjct: 171 -----VCESVAFDYEVRAAIDDGWLVPVEQQMVTIDGLDYSQIHTTA-GDLNSAELA-SV 223 Query: 232 KKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA---ALITGDTPGAE 288 +Q+R+ + +E A +R+ ++F ++V+ A+ +L A + G T E Sbjct: 224 MEQERVMHGTCAATIEIAGSRQ-TILFTSSVKQAEMACNILNRHRAGIAQFVCGATDREE 282 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG- 347 R ++ + L NV V T GFDAP V++I + RPT+S +LY Q+ GR R PG Sbjct: 283 RRKIMRRVLDGSTQILCNVGVATEGFDAPGVEVIVMGRPTKSRALYAQMAGRATRPLPGV 342 Query: 348 ------------------KTDCLILDYAGNPHDL 363 K CL++D+ GN Sbjct: 343 VDGPATPAERRAAIAASAKKACLLVDFVGNSGRH 376 >UniRef50_Q1GLF8 Type I restriction-modification system restriction subunit n=7 Tax=root RepID=Q1GLF8_SILST Length = 1130 Score = 293 bits (751), Expect = 9e-78, Method: Composition-based stats. Identities = 95/464 (20%), Positives = 153/464 (32%), Gaps = 80/464 (17%) Query: 6 RPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 R YQQ A+ F R + A++V+ TG+GK+ + L RVL LA Sbjct: 359 RFYQQRAIRRVGEAFERDRQRKALLVMATGSGKTRTVIALIDQLMRANWVRRVLFLADRV 418 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKE-----SHGKVVFGSVQSVARNLDAF------- 107 LV Q H ++ A S ++ + ++ +D Sbjct: 419 ALVKQAHNAFKTHLPTAASANLLKNHDPARNDHSGARICLSTYPTMLGLIDDVKGGEKQF 478 Query: 108 -QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 G F L+++DE HR +Y+ I + + L+GLTATP Y Sbjct: 479 GPGHFDLIVIDEAHR---SVYRKYRAIFDYFDGL-----LVGLTATPREEIDRDTYSLFE 530 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV----VQYDFSRLQAQSNGLF 222 L + YL PP + +P+ D+ L + + Sbjct: 531 LER---------GIPTDSYDLEDAVADEYLVPPRSISVPLKFQRDGIDYDSLSDEEKAEW 581 Query: 223 SE---------------ADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAAT 261 ADLNR L + + ++ +M +IFA Sbjct: 582 DAIEWDDEGAVPDRVEAADLNRWLFNKDTV-DKVLEHLMTNGIKVAGGDRLGKTIIFAKN 640 Query: 262 VEHAKEIVGLLP-------AEDAALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTT 312 +HAK IV + A LI A+ LI++F V+V +L T Sbjct: 641 SDHAKFIVERFDANYPHYMGQFARLIDYSVTYAQ--SLIDDFSEAEEAPHIAVSVDMLDT 698 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYA 365 G D P V + + S + + Q+VGRG R K + +I D+ N Sbjct: 699 GIDVPEVVNLVFFKIVRSKTKFWQMVGRGTRTCEDLFGPGQDKQEFIIFDFCQNLEFFNE 758 Query: 366 PEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGR 409 T + + ++F + + R Sbjct: 759 NPKITDSPTARPIGERLFVSRVELISALDEAGNESPLAADIKDR 802 >UniRef50_B4CXK7 Type III restriction protein res subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CXK7_9BACT Length = 445 Score = 293 bits (751), Expect = 9e-78, Method: Composition-based stats. Identities = 109/435 (25%), Positives = 182/435 (41%), Gaps = 35/435 (8%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-GRVLVLAHVKELVA 63 LR YQ A +A F H+ ++VLPTG GK++V+A LA + R LVLAH +EL+ Sbjct: 10 LRGYQVAAHEAIQRGFAEHQ-RQLLVLPTGGGKTVVLAHLAATHQPRRTLVLAHREELIT 68 Query: 64 QNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAFQ-GEFSLLIVDECH 120 Q K +A+ R + VV SVQ++ R + + F LL+VDE H Sbjct: 69 QAVDKIRAVTGLIPEVEMADFRASLNAPVVVASVQTLVRSSRRERWPHDHFGLLVVDEAH 128 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 Y L + + + +LG+TATP R K + ++ +++ Sbjct: 129 H---SLADSYLNTLRYFDE---NAFVLGVTATPDRGDKKNLGRY-------------YQN 169 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 YE+ L +++ +L+P +P+ + D + + G ++ DL ++ Sbjct: 170 IPYEVTLLDLVQQNWLSPIRVKTVPL-EIDLDDVGTTA-GDYNAQDLGHAIEPYLERVAD 227 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR 300 ++++ ++ + +++F + ++ L D +R ++ F+ Sbjct: 228 VLAEHVQ-----RKILVFLPLISLSRGFAELCRQRGLRAEHVDGTSDDRGDILARFRRGE 282 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNP 360 R L N +LT G+D P +D + LRPT+ SLY QIVGRG RL PGK L+LD+ Sbjct: 283 TRVLTNAMLLTEGYDEPSIDCVVCLRPTKIRSLYSQIVGRGTRLYPGKDHLLLLDFLWMS 342 Query: 361 HDL--YAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD--GTLIEHFGRRCQGWFE 416 + P + + G GK AD G C+ Sbjct: 343 EEHVLMKPANLIAADAEEANAITEALGFGGDLEEAKGKADADPCGHAAPAPPPECKAQRA 402 Query: 417 DDDGHREQCDFRFRF 431 D + R Sbjct: 403 DIRRAGVRPVAGRRG 417 >UniRef50_C7GDQ4 Type I restriction-modification system, R subunit n=5 Tax=Bacteria RepID=C7GDQ4_9FIRM Length = 1091 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 91/488 (18%), Positives = 157/488 (32%), Gaps = 99/488 (20%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAH 57 LR YQ A+ A K ++ + TG GK+ + + R+L L Sbjct: 376 LNLREYQLNAIKAAEQSVIEGKKNILLAMATGTGKTRTVLGMIYRFLKTNRFKRILFLVD 435 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q ++ + LE +I K + ++ +VQS+ + + G Sbjct: 436 RTSLGEQAADVFKEVKLEDLMTLDEIYNIKGFEEKNIDKETRIQVATVQSMVKRILYNDG 495 Query: 110 -------EFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRL 146 ++ L+I+DE HR D +S+Y+ ++ + V Sbjct: 496 EIMPAVTDYDLVIIDEAHRGYILDKEMGDTEILYRDQRDYQSKYRSVIEYFDAVK----- 550 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV 206 + LTATP +F +++ R + GYL + Sbjct: 551 IALTATP-----------------ALQTTEIFGQPVFKYTYREAVIEGYLVDHDAPHHLE 593 Query: 207 VQYDFSRLQAQSNG----------------------LFSEADLNRELKK---QQRITPHI 241 + + +S F NR++ + + I Sbjct: 594 TKLSTGGIHYKSGDTVMIYDPVTGEITNSELLVDELDFDVEQFNRQVITENFNKTVLSEI 653 Query: 242 ISQIM-EFAATRKGVMIFAATVEHAKEIVGLLPAEDAAL---------ITGDT---PGAE 288 I E + +I+A +HA IV +L + ITG + Sbjct: 654 ARDIDPENPEEQGKTLIYAVDDQHADMIVSILRDIYSKYGVSNEAIMKITGSVGGGNPKK 713 Query: 289 RDVLIENFKAQRFR-YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP- 346 I+ FK + + V V +LTTG D P + + +R +S L++Q++GR RL P Sbjct: 714 VQEAIKCFKNENYPSIAVTVDLLTTGIDVPEITTLVFMRRVKSRILFEQMLGRATRLCPK 773 Query: 347 -GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 KT I D G L P + N +I Sbjct: 774 IHKTHFEIYDPVGVYDSLNDVNTMKPVVVNPTTSFTQLLDGLSEINDDKQTEQQITQIIA 833 Query: 406 HFGRRCQG 413 R+ + Sbjct: 834 KLQRKKRN 841 >UniRef50_Q7UK96 Type I restriction enzyme EcoKI R protein n=3 Tax=Bacteria RepID=Q7UK96_RHOBA Length = 1138 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 92/495 (18%), Positives = 164/495 (33%), Gaps = 106/495 (21%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIA-----ELARLARGRVLVLAH 57 LR YQ++A++A + +T ++ + TG GK+ + R+L + Sbjct: 431 LPLRYYQRDAIEAVEKAIAKDQTEILLAMATGTGKTRTAICLLYRLIKASRFNRILFVVD 490 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ- 108 + L Q ++ + LE D+ G + + K+ ++QS+ + + Sbjct: 491 RRSLGEQAFDAFKDVKLEQNQSFPEIYDVKELGDVKPDRETKLHLCTIQSMVKRVVDQDS 550 Query: 109 -------GEFSLLIVDECHRIGD----------------DEESQYQQILTHLTKVNPHLR 145 ++ +++DECHR D S+Y+++L H V Sbjct: 551 NSEPYPVDQYDCIVIDECHRGYTLDRDMSEEELGYRDQLDYVSKYRRVLDHFDAV----- 605 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 +GLTATP +F +Y+ R + L E + Sbjct: 606 RIGLTATP-----------------ALHTTEIFGSPVYQYSYRQAVIDNNLVDHEPPFII 648 Query: 206 VVQYDFSRLQAQSNG---------------------LFSEADLNRELKKQQ--RITPHII 242 + + S + + NR + ++ ++ Sbjct: 649 LTELSESGMHWDAGETVKYFDTVTKSIADETTPDEIDIEIDGFNRLAITESFNQVVCDVL 708 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE-----------DAALITGDTPGAER-D 290 +Q ++ +IF HA +V LL A ITGD ER Sbjct: 709 AQQIDHTQPG-KTLIFCVRDTHADMVVRLLTAAIEQRHGPQPHDTVKKITGDI---ERTS 764 Query: 291 VLIENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLA---- 345 I FK + +Y+V V +LTTG D P + + LR T+S L+ Q++GR RL Sbjct: 765 EAIRRFKNEPIPKYVVTVDLLTTGIDVPEITNVVFLRRTKSRILFDQMIGRATRLCKDLF 824 Query: 346 ---PGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGT 402 K I D G L P + ++ Sbjct: 825 FDGEDKEYFHIYDAVGVYEALQDHTDMKPVVAKPFTMFKKLVELFQSSSDPDAHADIRQQ 884 Query: 403 LIEHFGRRCQGWFED 417 L+ R+ ++ Sbjct: 885 LVAKLRRKTPSINKN 899 >UniRef50_A2TPW6 Type I restriction enzyme, R protein n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TPW6_9FLAO Length = 1168 Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 94/452 (20%), Positives = 162/452 (35%), Gaps = 89/452 (19%) Query: 1 MIFTLRPYQQEAVDATLNHFRRH----------KTPAVIVLPTGAGKSLVIAELARLA-- 48 M T RPYQ A+ + H+ A++VL TG GK+ L+++ Sbjct: 360 MAITDRPYQMRAIRSVAEHWAGSDTRTGQLIGTNRRALLVLATGTGKTRTAISLSKILLE 419 Query: 49 ---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLD 105 R+L LA LV Q + L + + +++ ++VF + +++ +D Sbjct: 420 ANWAKRILFLADRISLVKQAKRNFVNLLPDHSTVNLIETKDDTNARIVFSTYKTLMGLID 479 Query: 106 AFQ---------GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRL 156 + + G F L+IVDE HR ++YQ I + + LGLTATP Sbjct: 480 SSRSEDGRFYGVGHFDLIIVDEAHR---SIYNKYQTIFEYFDGLF-----LGLTATPKGS 531 Query: 157 GKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPV---------- 206 Y + + +L+P + D+PV Sbjct: 532 IDHNTYDVFGLAK---------DNPTDAYDFDEAVAQKFLSPYKVHDVPVKFLRKGIKYS 582 Query: 207 ----------VQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFA------A 250 +A + + +L + L + +S ++ Sbjct: 583 ELSEEDKLKFEDEFLEGRKASGDEHIQKTELGKWLFNKPTAIK-ALSYFLKHGIKVNGGD 641 Query: 251 TRKGVMIFAATVEHAKEIV--------GLLPAEDAALITGDTPGAERDVLIENFKAQR-- 300 +IFA T +HA+ + + +IT TP A+ IE F + Sbjct: 642 EIGKTIIFARTQKHAEFLRDVLLEMDREQFGNKYVKVITNQTPKAQ--TFIERFCEDKKD 699 Query: 301 --FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDC 351 + ++V ++ TG DAP V + +P +S S + Q++GRG RL+P K + Sbjct: 700 LLPQIAISVDMMDTGIDAPKVVNLIFYKPVKSYSKFWQMIGRGSRLSPDLFGPGEDKKEF 759 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVF 383 LI D N G + +V Sbjct: 760 LIFDLCQNFEFFEENPEGIESNVQIGITEKVL 791 >UniRef50_B8ECU5 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=B8ECU5_SHEB2 Length = 1233 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 105/480 (21%), Positives = 169/480 (35%), Gaps = 86/480 (17%) Query: 3 FTLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLVLA 56 T R YQ+ A+ L HF H+ ++V+ TG GK+ + L L +L LA Sbjct: 424 ITNRHYQKAAITHILQHFELEHQRKVLLVMATGTGKTRTVISLVDLLVKNDWIKNILFLA 483 Query: 57 HVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---- 110 L++Q + L + ++G + ++ F + ++ LD + Sbjct: 484 DRNALLSQAKKNFVKLLPRVSCSVLSSGQSKDSIDSRLYFATYPTMKNLLDRGADDRPFG 543 Query: 111 ---FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 F L+IVDE HR S+Y+QI + + L+GLTATP + Y Sbjct: 544 VGHFDLIIVDEAHR---SVYSKYRQIFDYFDGL-----LVGLTATPKDEVEKDTYGIFDL 595 Query: 168 GMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM----------PVVQYDFSRLQAQ 217 Y YL PP ++ + D +L+ + Sbjct: 596 PK---------GMPTYAYEDASAYAEKYLVPPTKISVATKFLRNGVKYQELSDEEKLEWE 646 Query: 218 SNGLFS------EADLNRELKKQQRITPHIISQI---------MEFAATRKGVMIFAATV 262 + + +++N+ L + + +E +IFAA Sbjct: 647 NKAELTDREEVLPSEVNKFLFNEDTAEKMFAQLMSKDELGGIHVEGGDVIGKTIIFAANN 706 Query: 263 EHAKEIVGLLPAED-------AALITGDTPGAERDVLIENF------------KAQRFRY 303 +HA + + A +IT A+ LI+ F K R Sbjct: 707 DHAVFLEKIFNKNYPKWAGKLARVITFKETYAQ--SLIDEFGGEENNCKDFDPKNPTCRI 764 Query: 304 LVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDY 356 ++V +L TG D P V + + S + Q+VGRG RL P KT I DY Sbjct: 765 AISVDMLDTGIDVPEVVNLVFFKVVRSKVKFTQMVGRGTRLCPNLFGPGDDKTTFKIFDY 824 Query: 357 AGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFE 416 N A G P G + V QVF + T D T + + C+ + Sbjct: 825 CQNFEFFDANPEGLPVGITKPVMQQVFEKRVQLS-TLLNARLLDDTYRDKYPEDCELLRD 883 >UniRef50_B7RYA9 Type III restriction enzyme, res subunit family n=2 Tax=Gammaproteobacteria RepID=B7RYA9_9GAMM Length = 1165 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 105/552 (19%), Positives = 177/552 (32%), Gaps = 94/552 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVKE 60 R YQ E++ F + A++V TG GK+ V L + RVL L KE Sbjct: 371 RMYQIESITRVCERFIANHRKALLVQATGTGKTRVAIALTKRMIDAGWAKRVLFLCDRKE 430 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKES-HGKVVFGSVQSVARNLDAFQG-EFSLLIVDE 118 L Q Y E K+ + ++ + + R ++ F F L+I DE Sbjct: 431 LRKQAGKAYNEFLSEPLYIVGKSKKADRATAQLYISTYPGMMRIMEDFDPGYFDLIIADE 490 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR + + I + + LGLTATP + Q + Sbjct: 491 SHR---SIYNVFGDIFKYYDALQ-----LGLTATPVEMISRSTSQLFGCE---------Y 533 Query: 179 RDCIYELPLRYMIKHGYLTPPERL---------DMPVVQYDFSRLQAQSNG-------LF 222 + PL + G+L P + + + ++ F Sbjct: 534 KMPTANYPLEQAVADGHLVPFKVVSHTTQFLREGIQGHSLSDEQIAELEERGIDPNELDF 593 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAKEIVGLLPA-- 274 + A L++ + + I+ +ME +IFA ++HA + L Sbjct: 594 NAASLDKAVYNKDT-NRAILRNLMECGQRLADGQTLGKSIIFARNIQHADLMAELFAEMY 652 Query: 275 -----EDAALITGDTPGAERDVLIENFK-----AQRFRYLVNVAVLTTGFDAPHVDLIAI 324 +I AE LI++FK ++V +L TG D P + Sbjct: 653 PEYGGNFCRVIHSKFERAE--ELIDDFKATGGKDSEITIAISVDMLDTGIDVPEALNLVF 710 Query: 325 LRPTESVSLYQQIVGRGLRLAPG-----------KTDCLILDYAGNPHDLYAPEVGTPKG 373 +P +S + Q++GRG RL P K+ LI D+ N Sbjct: 711 AKPVKSKVKFWQMIGRGTRLRPNLYGPATDGSDDKSKFLIFDHWANFEYFEMEPEEEEPR 770 Query: 374 KSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKN 433 +S ++ +F FA + D FG+ +D D Sbjct: 771 QSKSLSQNLFESRLVFAEEALKRGEMD-----AFGKMVVLIKQDIDSLD----------- 814 Query: 434 CPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLK 493 + +IA + L D + + A K L + + + + E LK Sbjct: 815 ------DKNIAIKDNWTLKQQLSQVDVLHQFAPVTKSLLFDQMAPLMQWRNIKGQSEALK 868 Query: 494 ITYYDEDGADVS 505 + Sbjct: 869 FDLDVVNAQYAR 880 >UniRef50_A4CPV8 Putative helicase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CPV8_9FLAO Length = 496 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 109/546 (19%), Positives = 203/546 (37%), Gaps = 89/546 (16%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHVKEL 61 LR YQ++ + R+ + VLPTG GK+ + + RVL+L EL Sbjct: 2 LRSYQKDLISRLRLAIRQGNRRIIAVLPTGGGKTFTFTHIVKGAVDKGRRVLILTDRIEL 61 Query: 62 VAQNHAKYQALGLEADIFAAGLKRKESHGKVVF-GSVQSVARNLDA-----FQGEFSLLI 115 + Q Q GL+ RK G V++ V+++AR + F + ++I Sbjct: 62 LRQAGGALQVYGLDP--IEIKAGRKPYLGGVLYTAMVETLARRVKKKDYQHFLQKMQVVI 119 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H + ++ + + R+LG TATP R+G+ +YH + G E Sbjct: 120 IDEAH------MRSFDKLFPYFSA---DARVLGFTATPRRMGRKNQLGEYYHHLEVGVE- 169 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + Y++ +G+L P + + D S ++ G + ++ K + Sbjct: 170 -----------IEYLVDNGFLAEPNYYGV---ESDLSGVRT-VRGEYDANEVADRFSKTK 214 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLI 293 + ++ + + + ++FA+ + ++E++ + A + +R + Sbjct: 215 -LYRGVVENW-KRISPGEKTLVFASNIASSQELITEFTQQGVDARHLDATVSDLDRRNTL 272 Query: 294 ENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLI 353 F L NV +LT GFD P + + + R T+SV LY Q+ GRG R+A GKT I Sbjct: 273 AWFDRTPGAVLCNVGILTKGFDQPDIRTVILYRATKSVPLYLQMCGRGSRMAHGKTSFNI 332 Query: 354 LDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQG 413 LD+ GN FW +E + + Sbjct: 333 LDFGGNIARHG----------------------------FW--HDVRPWSLEVMPMQDRQ 362 Query: 414 WFEDDDGHREQCDFRFR--FKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAA--LRLK 469 E + +QC+ CP C E+ + L+DP ++ + A + ++ Sbjct: 363 IGEAVLKNCKQCEAFIPTATVICPHCGYEDVKEKEEQQFARLQLLDPRELRRRAEVMTME 422 Query: 470 DALVLRCSGM--------SLQHGHDEKGEWLKITYYDEDGADVSERFRLQTPAQRTAFEQ 521 + + G+ L + W ++ + F Sbjct: 423 GKIEMAKKGLVKPFWVIHQLGRSGGGEDAWEEVKRFVSGMGWSPYWFSYNYERF------ 476 Query: 522 LFIRPH 527 + + H Sbjct: 477 -WWKDH 481 >UniRef50_B3T0J4 Putative DEAD/DEAH box helicase n=1 Tax=uncultured marine microorganism HF4000_005I08 RepID=B3T0J4_9ZZZZ Length = 607 Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats. Identities = 112/486 (23%), Positives = 179/486 (36%), Gaps = 38/486 (7%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL--ARGRVLVLAHVKE 60 LR +QQ+ +D ++ PTGAGK+++ ++ A +V+VL H Sbjct: 1 MKLRNWQQKIIDD-FPSITASYKRFILKAPTGAGKTVLARQIIDQFYAGKKVIVLCHRLV 59 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 L+ Q + + + + ++ + LD + L+IVDE H Sbjct: 60 LLDQLQSVLSENRRVRTLAVSDKGTAFDNYDILLSTSMRAREVLDDAIPKADLIIVDEAH 119 Query: 121 RIGDDEESQYQQILTHLTKV-NPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 R+ + Y++I+ K P +GLTA+P R Q + F Sbjct: 120 RVSPNGRG-YRRIIEKFRKEGKPSAHFMGLTASPERRTGDQRDQLNLA----------FD 168 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 I ++ +I G L P+ V D + S G + + L E+ K + Sbjct: 169 AIIDCANIQELISEGILVQPKYRPYFVHDLDLDSINVSS-GEYPVSRLTDEIIKSS-MLD 226 Query: 240 HIISQIMEFAAT---RKGVMIFAATVEHAKEIVGLLP--AEDAALITGDTPGAERDVLIE 294 + ME +T R F V A L +A +IT T ER ++ Sbjct: 227 YATHAYMEERSTISSRPTSAWFCPDVRVAGITRDRLESIGINAEIITAGTSIKERRRILS 286 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 LV+V VLT G+D P ++I +RPT S L+ Q VGRGLR APGK +C+++ Sbjct: 287 GHHTGDIEALVSVGVLTEGWDNPACNIIVHMRPTLSKVLWGQSVGRGLRSAPGKEECIVI 346 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGW 414 D + N E S F W D EH Sbjct: 347 DVSSNWTTFGPAEKLKWTLWSPPRSFLRF-----QNRFNWIGQQQDDE--EHPE--TYLL 397 Query: 415 FEDDDGHREQCDFRFR-----FKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLK 469 ++D C + +R CP C + + R D + D + L + Sbjct: 398 CKNDIIGGRPCSYIYRKNQTDGDACPVCGTYAAVDIYKERRLDLTISD--NKLHRIFFSR 455 Query: 470 DALVLR 475 A + + Sbjct: 456 TAEIYK 461 >UniRef50_C8W942 Type III restriction protein res subunit n=5 Tax=Bacteria RepID=C8W942_ATOPD Length = 1125 Score = 291 bits (744), Expect = 6e-77, Method: Composition-based stats. Identities = 90/466 (19%), Positives = 152/466 (32%), Gaps = 85/466 (18%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 R YQ EA++A + +++V+ TG GK+ A L + VL LA Sbjct: 346 RYYQVEAIEAVCQNMEEGHRRSLLVMATGTGKTRTAAGLVDVLSRAGAVTNVLFLADRVA 405 Query: 61 LVAQNHAKYQALGLEADIFAA---GLKRKESHGKVVFGSVQSVARNLDAFQGE------- 110 LV Q +Q + K K ++VF + ++ +D + + Sbjct: 406 LVRQAKNAFQNYLTTMTVCNLCETDDKAKNVDARIVFSTYPTILNAVDDVKRDGDARLFT 465 Query: 111 ---FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYH 167 F L+IVDE HR +Y+ I + ++GLTATP Y F Sbjct: 466 PAHFDLIIVDEAHR---SIFKKYRAIFDYFDS-----PVVGLTATPKDEVDRNTYDFFQV 517 Query: 168 GMVRGDEKALFRDCIYELPLRYMIK-HGYLTPPERLDMPV-------------------V 207 Y ++ L P +++ Sbjct: 518 ER---------GIPTYLYEYATAVEKDKVLVPYYNIEVQTNFLSKGITYDELSEEDRQRY 568 Query: 208 QYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFAAT 261 D+ Q S + EA + +++ +M+ K +IFA Sbjct: 569 DDDWEEAQGTSAPDYVEASALDRFVFNEHTIDLVLTTLMDEGIKIKGGEHIGKTIIFAQN 628 Query: 262 VEHAKEIVGLLPAE--------DAALITGDTPGAERDVLIENFKAQRFRYL-VNVAVLTT 312 +HA+ IV + A +I +F+ + + V+V ++ T Sbjct: 629 RKHAEIIVKRFNELYPKFGAQGFCKRVVHTDDYA--PTVITDFETKEMPTITVSVDMMDT 686 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------------KTDCLILDYAGN 359 G D P V + + +S + Q++GRG RL G K I D+ GN Sbjct: 687 GIDVPEVVNLVFFKQVKSKVKFWQMIGRGTRLCEGIHAQDKVSGEYEDKKHFFIFDWCGN 746 Query: 360 PHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIE 405 + +++ +VF A G A E Sbjct: 747 FEFFRQEQKLAEGANPESMQEKVFKRQALLAQALQGADFASDDYQE 792 >UniRef50_B9M295 Type III restriction protein res subunit n=2 Tax=Proteobacteria RepID=B9M295_GEOSF Length = 908 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 91/420 (21%), Positives = 147/420 (35%), Gaps = 63/420 (15%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-----RLARGRVLVLAHVKE 60 R YQ EA+ K ++V+ TG GK+ L RVL LA +E Sbjct: 154 RDYQNEAIRRVTEGVDAAKRKFLLVMATGTGKTRTTIALVDTLLRAKRVQRVLFLADRRE 213 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDEC 119 LV Q A++++ + S ++ F + S+ + G + L+I DE Sbjct: 214 LVRQAMAEFKSHLPNESLARIEGGE-TSGARIQFATYPSMMQVYSRLSVGYYDLIIADES 272 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 HR +Y+ I H + LGLTATP + G Sbjct: 273 HR---SIYQRYKAIFDHFDAIQ-----LGLTATPTDYIDHNTFALFDCGD---------G 315 Query: 180 DCIYELPLRYMIKHGYLTPPERLDM----------------PVVQYDFSRLQAQSNGLFS 223 Y I L LD P+ Q + F Sbjct: 316 TPSYYYSYEQAIADNNLVNYRVLDAQTNFQLRGIQGDTLPEPLKQMARDQGVELDELNFE 375 Query: 224 EADLNRELKKQQRITPHIISQIMEFAATR-----KGVMIFAATVEHAKEIVGLLPAED-- 276 +D+ + + Q ++ + M+ + +IFA + HAK + Sbjct: 376 GSDIEKSIINQAT-NDAMVREFMDKSRKDIRGLPHKSIIFAVSHAHAKRLYESFNRLYPE 434 Query: 277 ------AALITGDTPGAERDVLIENFK-AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTE 329 A +I A+ +++FK R ++V +L TG D P + + +P Sbjct: 435 LQRQGMAEMIDSHMERAD--ATLDDFKFKSMPRVAISVDMLDTGVDIPAIQNLVFAKPVF 492 Query: 330 SVSLYQQIVGRGLRLAPG------KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVF 383 S + Q++GRG RL K D LI+D+ N G S+ +PV++F Sbjct: 493 SKVKFWQMIGRGTRLHADKATGEIKKDFLIIDHWKNFAYFKLKPDGEIDHPSEPLPVRLF 552 >UniRef50_UPI0001545E85 hypothetical protein ORF029 n=1 Tax=Pseudomonas phage 73 RepID=UPI0001545E85 Length = 551 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 153/602 (25%), Positives = 238/602 (39%), Gaps = 95/602 (15%) Query: 2 IFTLRPYQQEAVDATLNHFRRHK-TPAVIVLPTGAGKSLVIAELARLA-----RGRVLVL 55 I+ R YQ EA + ++F+R V+ +PTG GKS+VIA R R+++L Sbjct: 4 IYVPRWYQDEAEYSIFDYFQRGGVGNPVVAMPTGTGKSVVIANFIRRIFGYWPNQRIMML 63 Query: 56 AHVKELVAQNHAKYQALGL--EADIFAAGLKRKESHGKVVFGSVQSVA----RNLDAFQG 109 HVKEL+ QN K ++ I++AGL ++ +VFG VQSVA R L+ G Sbjct: 64 THVKELIEQNAEKLMSIWPTAPMGIYSAGLNSRDMIMPIVFGGVQSVAPAIKRGLEEDDG 123 Query: 110 EF---------SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW 160 LL++DECH + D E+S YQ I+ L K+NPHL+++G TATP+R+ G Sbjct: 124 RPAHLRHFGWRDLLLIDECHLLSDKEDSHYQYIIAELRKINPHLKVIGFTATPYRMKMGL 183 Query: 161 IYQFHYHGMVRGDEKALFRDCIYEL----PLRYMIKHGYLTPPERLDMPVVQYDFSRLQA 216 I +F D Y++ +I GYL+P + D S++ Sbjct: 184 ITD-----------NGIFTDICYDITGVESFNRLIAEGYLSPL-IARPTRTEIDLSKVGV 231 Query: 217 QSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED 276 + G F+ L + + + + + ++ E A R +IFA +++ + + ++ + Sbjct: 232 TA-GEFNSKQLEAAVDTDE-VVFNAVREMTEIAYDRSTWLIFATGIDNTEHVANVIQSYG 289 Query: 277 AAL--ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 + + P + FKA R LV+ LTTGFD P +D I L PT S + Sbjct: 290 LEVLPVHSKLPSKTNTERLRAFKAGELRGLVSGQKLTTGFDHPPIDFIGDLNPTLSPGKH 349 Query: 335 QQIVGRGLRLAP--GKTDCLILDYAGNPHDLY---APEVGTPKGKSDNVPVQVFCPACGF 389 Q +GRG R +P GK +CL D+AGN L P + GK C CG Sbjct: 350 VQKLGRGTRPSPDTGKQNCLYADFAGNVRRLGPINDPRIPNRPGKGGGDAPVRICDVCGV 409 Query: 390 ANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCR 449 N + C C E + Sbjct: 410 YNHAAARQ------------------------------------CINCGTEFTFETKL-F 432 Query: 450 ECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDE---KGEWLKITYYDEDGADVSE 506 L VL + + + K +K++Y +E Sbjct: 433 ATAGTLEPLRSDAPIVEYFDVQKVLYN--LHEKRDANGNLTKPPMIKVSY-FCGFQMFNE 489 Query: 507 RFRLQTPA-QRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYW 565 L+ P + + H P T L + + LR P V + +Y Sbjct: 490 FIMLEHPGLAAKRSRDWWRQRHAEEP-----PPTTYQALQRVSELRTPRRVRVWVNKKYP 544 Query: 566 QV 567 +V Sbjct: 545 EV 546 >UniRef50_Q2P0A6 Type I restriction-modification system R subunit n=10 Tax=Proteobacteria RepID=Q2P0A6_XANOM Length = 1183 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 103/502 (20%), Positives = 164/502 (32%), Gaps = 100/502 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAH 57 LR YQQ A+ A ++ + TG GK+ + L R+L L Sbjct: 463 LNLRDYQQRAIQAVEGALASGARNCLLAMATGTGKTRTMIGLIYRLLKAERFHRILFLVD 522 Query: 58 VKELVAQNHAKYQALGLEAD--------IFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q Q + LE + + R +V +VQ++ R + Sbjct: 523 RSALGTQATETMQDMQLEQNQTLAQIYNLDGLDDTRTADETRVQVATVQAMVRRIFQSDD 582 Query: 110 E-----FSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRLLG 148 F ++VDE HR SQY+++L + +G Sbjct: 583 PPPIGTFDCIVVDEAHRGYTLDQEMTDGELAVRDHAQYLSQYRRVLDYFDA-----CRIG 637 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLT---PPERLD-- 203 LTATP +F IY R + +L PP R Sbjct: 638 LTATP-----------------AKHTTEIFGKPIYTYSYREAVADDWLIDHEPPIRYTTA 680 Query: 204 -----MPVVQYDFSRLQAQSNGLFSEADLNREL-KKQQRITPHIISQIMEFA-------- 249 + + + + G ADL EL + +I+ + Sbjct: 681 LGKNGIHFDRGERVSVINTQTGDVDTADLEDELDFNIESFNRRVITANFDRVVCEQLAIE 740 Query: 250 ---ATRKGVMIFAATVEHAKEIVGLL------------PAEDAALITGDTPGAERDVLIE 294 + +IF HA+ + L A+ITG + + LI Sbjct: 741 LDPDGEEKTLIFCVNQPHAERVKHQLDEAFKQVHGNYYNQASVAVITGKSDKVD--QLIR 798 Query: 295 NFKAQRFR-YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 N+K +RF + V +LTTG D P + + +R S LY+Q+ GR R GKT Sbjct: 799 NYKNERFPTIAITVDLLTTGIDVPRIANLVFMRRVRSRILYEQMKGRATRRCDDIGKTVF 858 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFW-----GKTTADGTLIEH 406 I D L + P K N+ ++ G ++ G + AD L + Sbjct: 859 RIFDPVDLYAALEDVDTMRPLVKDPNISIEQLVHELGQQRSYDAPGSNGGSHADDALDQL 918 Query: 407 FGRRCQGWFEDDDGHREQCDFR 428 R + + ++ D R Sbjct: 919 SQRIMRVLRKAQHRAEQRPDLR 940 >UniRef50_A5TW30 Type I site-specific deoxyribonuclease restriction subunit n=6 Tax=Bacteria RepID=A5TW30_FUSNP Length = 1127 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 87/453 (19%), Positives = 152/453 (33%), Gaps = 76/453 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELAR-----LARGRVLVLAHVKE 60 R YQ+ AV + ++ +++V+ TG+GK+ V + R L LA Sbjct: 341 RYYQERAVKKAIENYISGNRKSLLVMATGSGKTRVAISIVDCLSRLNMVKRTLFLADRVA 400 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---------F 111 LV Q ++ + + ++ + K+VF + Q++ + + + F Sbjct: 401 LVKQALNNFKKSLPDYTLVDLVSEKDRDNAKIVFSTYQTMMAESEKTREDGTDKYGVGAF 460 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR +Y + + + +LGLTATP ++ Sbjct: 461 DLIIVDEAHR---SIYQKYGDLFEYFDSL-----ILGLTATPKDEIDRNTFKVFDMNSK- 511 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP--------VVQYDFSRLQAQSNGLFS 223 + L K YL P+ + V + + LF Sbjct: 512 --------EPTDSYDLFEAAKDKYLLLPKIKEGTLNYPENGIVYSKLSEEEKEKYESLFD 563 Query: 224 EAD----------LNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHAKE 267 E D LN + +++ +ME +IFA HA Sbjct: 564 EEDSMPEEISGDSLNSWFFNDGTTSK-VLTTLMEEGYKIESGDKLGKTIIFAKNDRHADH 622 Query: 268 IVGLLP-------AEDAALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAPH 318 IV + E IT T + LI+ F + V+V +L TG D P Sbjct: 623 IVEIFNKLYKNLGGEFCQKIT--TKVEKVQALIDRFVNPNSFPQIAVSVDMLDTGIDIPE 680 Query: 319 VDLIAILRPTESVSLYQQIVGRGLRLA-------PGKTDCLILDYAGNPHDLYAPEVGTP 371 + + + +S + + Q++GRG R K D LILD+ N + Sbjct: 681 ILNLVFYKKVKSKAKFWQMIGRGTRKYKDIYGIGKDKEDFLILDFCRNFSYFEMKDRFEE 740 Query: 372 KGK--SDNVPVQVFCPACGFANTFWGKTTADGT 402 + ++ ++F Sbjct: 741 DNTKLTKSLSSKIFENKIKMIFKLQDLEYQMDE 773 >UniRef50_Q47281 Type I restriction enzyme EcoEI R protein n=45 Tax=Bacteria RepID=T1RE_ECOLX Length = 813 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 88/438 (20%), Positives = 162/438 (36%), Gaps = 62/438 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVK 59 R YQ +A++ T++ K ++V+ TG GK+ ++ + R+L LA Sbjct: 168 PRYYQMQAINRTVDAVSAGKNRILLVMATGTGKTYTAFQIIWRLWKAKNKKRILFLADRN 227 Query: 60 ELVAQNH-AKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDA-------FQGEF 111 LV Q +Q G + + + +V Q++ + F Sbjct: 228 ILVDQTKRNDFQPFG--NAMTKVTGRTIDPAYEVHLALYQAITGPEEHQKAYKQVAPDFF 285 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+++DECHR E+S +++IL + +GLTATP + Sbjct: 286 DLIVIDECHRGSASEDSAWREILEYFGSATQ----VGLTATPKETEDVSNIDY------- 334 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLD----------MPVVQYDFSRLQAQSNGL 221 F + +Y L+ I+ G+L P + + PV + + + Sbjct: 335 ------FGEPVYTYSLKEGIEDGFLAPYKVVRVDIDVDVQGWRPVKGQLDKYGEEIEDRI 388 Query: 222 FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLL------- 272 ++ D +R L +R + I+ ++ ++F ++HA + L Sbjct: 389 YNLKDFDRTLVIDERTMLVAQTITDYLKRTNPMDKTIVFCNDIDHADRMRHALVVLNPEQ 448 Query: 273 ---PAEDAALITGDTPGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDLIAILR 326 + ITGD ++NF + ++TTG DA L+ + + Sbjct: 449 VLKNEKYVMKITGDDDIG--KAQLDNFINPKKAYPVIATTSELMTTGVDAQTCKLVVLDQ 506 Query: 327 PTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDLYAPEVG-TPKGKSDNVPVQVF 383 +S++ ++QI+GRG R+ GK ILD+ P P+ P + Sbjct: 507 NIQSMTKFKQIIGRGTRINEKHGKLWFTILDFKKATELFADPRFDGLPEKVLVVKPGDIS 566 Query: 384 CPACGFANTFWGKTTADG 401 F + ADG Sbjct: 567 DKDSDFNEQLDAENNADG 584 >UniRef50_C6A4W6 Type III restriction enzyme, res subunit n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4W6_THESM Length = 841 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 96/418 (22%), Positives = 157/418 (37%), Gaps = 70/418 (16%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHV 58 R YQ AV L + ++ + TG+GK+ V ++A R ++L + Sbjct: 161 KPRYYQDVAVRRALEEILLGRKRLLLTMATGSGKTYVAFQIAWKLRKSNFLKKILFIVDR 220 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVA------RNLDAFQGE-F 111 L Q + ++A G + V F + Q++ R F + F Sbjct: 221 VYLRNQAYNAFEAFG--NSRWELKGDNFNFAKDVYFATYQTLYSEKNGKRVYQYFDPDYF 278 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+I+DECHR G +++ IL + + LGLTATP R +Y++ Sbjct: 279 DLVIIDECHRSGW---NRWHDILGYFN----NAIHLGLTATPKRSDNVDVYKY------- 324 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSR-----------------L 214 F D +YE L I+ GYL PPE + D Sbjct: 325 ------FGDPVYEYKLAQGIEDGYLAPPEEIIRVYTNIDKEGKITFKELRSAGVKLEIPE 378 Query: 215 QAQSNGLFSEADLNRELKKQQRITPHI--ISQIMEFAATRKGVMIFAATVEHAKEIVGLL 272 +A+ ++ + + + R + I+Q +E ++F T HA+E+ LL Sbjct: 379 EAELKEYYTAEEFEKSIILPDRTKAIVNWIAQFLESTNPFAKTVVFCPTQRHAREVAALL 438 Query: 273 PAED---------AALITGDTPGAERDVLIEN-FKAQR---FRYLVNVAVLTTGFDAPHV 319 A I D P E +++N F + V VL+TG D P + Sbjct: 439 NNHFNNKFNVDNYAYPIISDDP--EAHQVLKNSFASNDEIFPVVATTVDVLSTGIDVPPI 496 Query: 320 DLIAILRPTESVSLYQQIVGRGLRLAPG--KTDCLILDYAGNPHDLYAPEVGTPKGKS 375 I L+ S + QI+GR RLA K ++D+ G ++ + K Sbjct: 497 KNIIFLKHIGSKVEFHQIIGRASRLAENMRKFTFRVIDFTGATRLFDKWDIPDYQAKP 554 >UniRef50_A0YWD0 Putative helicase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YWD0_9CYAN Length = 571 Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 34/394 (8%) Query: 20 FRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVKELVAQNHAKYQALGLEA 76 + + V P GK++V + + A +VL++ + L+ Q L+A Sbjct: 54 IQNGYKRVLFVAPCAYGKTIVFSSITYDAIQKNCKVLIVVPFQALIQQVLKSLALFDLKA 113 Query: 77 DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQ--QIL 134 + AG +++ + Q++ R + L+I+DECH++ + ++ + ++ Sbjct: 114 GVI-AGGWKEDRQPNIQVAMRQTLERGHRESWFDPDLVIIDECHQVMWSKWAKKRCPRLN 172 Query: 135 THLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHG 194 + + L+G TA+P+RL K + +F I +I++G Sbjct: 173 KNPDSLTYSPLLIGFTASPWRLSKRENF------------GHIFEVQIASQSPASLIENG 220 Query: 195 YLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKG 254 YL P + D ++ + G F+ +L + + R Sbjct: 221 YLVPTVYYGI--AGADLKGVKIRQ-GDFAIGELELR-CNAPAVVKATVDNYERLCPQR-L 275 Query: 255 VMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTT 312 +++A V+HA+ + +AL+T T ER + ++F + L+NV V +T Sbjct: 276 TLVYAVGVKHAQSLFQEFTNRGHTSALVTAKTSDEERLQIFDSFSQGDVKILINVGVCST 335 Query: 313 GFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNPHDL------- 363 GFD P V I + RPT+S +LY Q++GRG+RL P GK+DCLILD GN Sbjct: 336 GFDRPEVSCIILARPTQSKALYVQMIGRGMRLCPQQGKSDCLILDQGGNIQRHGSVEEIE 395 Query: 364 YAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKT 397 Y P ++ P CP CG K Sbjct: 396 YEPLTELELSQNRGEPAVKTCPECGHLIRLSQKQ 429 >UniRef50_A3IZE6 DEAD/DEAH box helicase-like protein n=2 Tax=Cyanothece RepID=A3IZE6_9CHRO Length = 522 Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 104/409 (25%), Positives = 166/409 (40%), Gaps = 44/409 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELAR---LARGRVLVLAHV 58 F LRPYQ + V++ + + ++V TGAGK+++ + L + L +VL L H Sbjct: 14 FKLRPYQAQVVESVHQQLKTDQRQRVLVVAGTGAGKTVIASHLTQDFLLQNKKVLFLVHR 73 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE---FSLLI 115 LV Q +K+ L I AG + + SVQ++ R + F + I Sbjct: 74 DILVKQTVSKFTHL--PHGII-AGRHQLNLSQPLQVASVQTLGRKGVEWLNHHFPFDIAI 130 Query: 116 VDECHRIGDDEESQYQQILTHL-TKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDE 174 DE H S ++ L + H +GLTATP+R K Y V Sbjct: 131 FDESHLTNWFNFS--LELFPRLPLSQDDHTICIGLTATPWRRSKYQAMGDLYQSSVFAPL 188 Query: 175 KALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQ 234 +I G+L P + V+ R++ NG + L Sbjct: 189 PG------------ELISQGFLVPFAYFSIGKVEKKGLRIR---NGEYETVKLKVRCNTP 233 Query: 235 QRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 + I HI+++ ++ A R +IF+ +EHA+ I + AA + G +R+ + Sbjct: 234 EVI-QHIVNEWLDKAKNRP-TIIFSIDIEHAQAIAQAFNNQGISAASVDGTMKIGDREKI 291 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG--KTD 350 E ++ + + + L+ GFD P V + + R T S + Y Q +GRG R+ P K D Sbjct: 292 YEQLAQRKIQVVCSCEALSEGFDVPIVSCVVLARLTTSKAKYIQQIGRGARITPDGEKRD 351 Query: 351 CLILDYAGNPHDLYAPEV----GTPKGKSDNV------PVQVFCPACGF 389 CL+LD G + E S+N P CP C Sbjct: 352 CLVLDAVGLVEEFGFFEDISYEDLELRTSENKPDHKTPPPMKNCPKCQQ 400 >UniRef50_UPI000050FFCE type III restriction enzyme, res subunit n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FFCE Length = 1135 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 89/413 (21%), Positives = 146/413 (35%), Gaps = 73/413 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 R YQ++ + F + A++V+ TG+GK+ L RVL LA + Sbjct: 364 RGYQRQIIAQVGRDFDDRQREALLVMATGSGKTRTAIALVDQLMKANWVKRVLFLADRRA 423 Query: 61 LVAQNHAKYQALGLEADIFAA--GLKRKESHGKVVFGSVQSVARNLDAFQG------EFS 112 LV Q ++ A + + G+V + ++ +D F Sbjct: 424 LVKQAAGEFTAHLPNVTTVNLLDTTDKDNASGRVFVSTYPTMMGLIDKGDDTVFGPGYFD 483 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+I+DE HR +Y+ I + LLGLTATP + + Sbjct: 484 LVIIDEAHR---SVYRKYKAIFDWFDSL-----LLGLTATPKDEIDRNTFNLFHIEN--- 532 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDM---------------PVVQYDFSRLQAQ 217 L I+ YLT P +++ + D+ L+ + Sbjct: 533 ------GVPTGAYTLEQAIRDKYLTEPREINLGTKFLEEGIHYADLDEEARTDWDELEWE 586 Query: 218 SN---GLFSEADLNRELKKQQRITPHIISQIM------EFAATRKGVMIFAATVEHAKEI 268 LN L + +I ++M E +IFA HA I Sbjct: 587 DGTIPDDVHATALNNYLFNADTV-DIVIDKLMSDGLKIESGDKLGKSIIFAQNQRHADFI 645 Query: 269 VGLLP-------AEDAALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDAPHV 319 + A +IT T A+ LIE FK + ++V +L TG D P + Sbjct: 646 QQRFDIHYPAHAGKFARVITHQTDSAQ--DLIEKFKDPNQHPQIAISVDMLDTGIDIPEI 703 Query: 320 DLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYA 365 + + + S S + Q++GRG RL+P KT+ + D+ N Sbjct: 704 LNLVLFKKVRSKSKFWQMIGRGTRLSPDIFGPGHDKTEFYVFDFCANFEYFNE 756 >UniRef50_Q0ATD1 Type III restriction enzyme, res subunit n=4 Tax=Proteobacteria RepID=Q0ATD1_MARMM Length = 1137 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 107/550 (19%), Positives = 169/550 (30%), Gaps = 89/550 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVKE 60 R YQ E + F A+IV TG GK+ V L+ L RVL L +E Sbjct: 361 RLYQVETIKRVSERFEDKHRKALIVQATGTGKTRVAIALSELLIRAKWAKRVLFLCDRRE 420 Query: 61 LVAQNHAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q + E R ++ ++ + ++ + AF G F L+I DE Sbjct: 421 LRKQAKNAFGNFLKGEPIRVVNSAIRGNANERIFVATYPAMLKVYQAFDVGFFDLIIADE 480 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR + Y + + +GLTATP + Sbjct: 481 SHR---SIYNVYGDLFYYFD-----CPQVGLTATPVDFVTRSTFDLFKCEG--------- 523 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPV----VQYDFSRLQAQSNG------------LF 222 ++ L I+ GYLTP E + L + Sbjct: 524 QNPTANYELEQAIEEGYLTPFEVYEHTTKFLREGIRLEGLTKAQRQQLEDQGEDPDQYDY 583 Query: 223 SEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHAKEIVGLLPA-- 274 S +++ + + ++ +ME T +IFA + HA + + Sbjct: 584 SSEVVDKAIFNKDT-NRAVLRNLMENGLRDASGQTIGKTIIFARSHAHALLLREVFDELY 642 Query: 275 -----EDAALITGDTPGAERDVLIENFK----AQRFRYLVNVAVLTTGFDAPHVDLIAIL 325 +I P AE LI++FK + ++V +L TG D P + + Sbjct: 643 PQYGGRFCQVIDNYDPRAE--QLIDDFKGDGANKDLTIAISVDMLDTGIDVPEILNLVFA 700 Query: 326 RPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGTPKGKSDNV 378 +P S + Q+VGRG RL KT I D+ GN S ++ Sbjct: 701 KPVRSPVKFWQMVGRGTRLCEDLFGPGQHKTVFRIFDHWGNFERFETGYKPAEPRPSKSL 760 Query: 379 PVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCN 438 Q+F L E R+ + + D P Sbjct: 761 LQQLF--------------EQRIDLAETALRKSEIPVFETVVQLIAAD----VSALP--- 799 Query: 439 AENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYD 498 EN IA R D + + A AL + + K E Sbjct: 800 -ENSIAVREKWREKRQFADLETVKSFAPTTVAALRQTIAPLMQWRDVRGKTEAHAFDLLI 858 Query: 499 EDGADVSERF 508 + + Sbjct: 859 ARLQTAALQG 868 >UniRef50_D1VXH8 DEAD/DEAH box helicase n=13 Tax=Bacteroidales RepID=D1VXH8_9BACT Length = 391 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 190/386 (49%), Gaps = 20/386 (5%) Query: 1 MIFTLRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAELARLARGRVLVLAHVK 59 M + LR YQ++A DA + F+ K +I++ TG GKSL+IA++A +LV K Sbjct: 1 MKYILRDYQKQASDAAVKSFKSSKKINGLIIVSTGGGKSLIIADIASRLDSPLLVFQPSK 60 Query: 60 ELVAQNHAKYQALGL-EADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDE 118 E++ QN AK Q+ G+ + ++A + K+ + ++ F ++ SV +++ F+ F ++VDE Sbjct: 61 EILQQNFAKLQSYGILDCGCYSASVGSKDIN-RITFATIGSVMNHMEDFK-HFKYVLVDE 118 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 H + + + Y++ + ++GLTATP+RL + +F Sbjct: 119 AH-VINSKGGMYEKFINA-----EERHVIGLTATPYRL--SSYMAGSMLKFLTRTRPRIF 170 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRIT 238 + +Y ++ G+L + D+ + D R + + E L E ++ Sbjct: 171 SEVLYVCQTSDLLAKGFLADLKYYDLTAINLDNVR-SNSTGADYDEKSLKMEYERSGFFD 229 Query: 239 PHIISQIM----EFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVL 292 + + + RKG+++F VE A+ +V L + + A ++TG+T ++R+ + Sbjct: 230 KLTTTTLRVLKPKSGVPRKGILVFTRFVEEAENLVRKLRSINIPAEVVTGNTSKSDREWM 289 Query: 293 IENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCL 352 +E FK+ + + N VLTTGFD P +D + + RPT+S++LY Q VGR +R GK Sbjct: 290 LEKFKSGEIKVIANAQVLTTGFDYPELDTVIMARPTKSLALYYQCVGRAIRPFKGKD-GW 348 Query: 353 ILDYAGNPHDLYAPEVGTPKGKSDNV 378 I+D GN + N Sbjct: 349 IIDLCGNYRRFGKVSDLKIDVEKPNS 374 >UniRef50_A6FSI5 Helicase n=2 Tax=Roseobacter sp. AzwK-3b RepID=A6FSI5_9RHOB Length = 525 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 106/516 (20%), Positives = 173/516 (33%), Gaps = 74/516 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR---VLVLAHVK 59 LR YQ +A++A + RR ++ TGAGK+L A + R A R L + Sbjct: 13 IRLRDYQAQAIEALRDGIRRKLRRQILCATTGAGKTLTSAHMLREAAERGSYTLFIVDRL 72 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 LV Q A + G+ + R V S Q++AR + + L+IVDEC Sbjct: 73 ALVDQTSAVFDEYGIPHGVVQGDHPRWAPRENVQVCSAQTLARR--SLPRDPDLIIVDEC 130 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H + + + N ++GLTATPF + Sbjct: 131 HVLYKNTR--------EFIEANSKAVVIGLTATPF----------------TKGIGKQYD 166 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + +P R +I+ +L P + D + E + ++ + Sbjct: 167 GIVNVIPTRQLIEQEHLIEPTIYVAKSPE-DAAFGLNSYGEFSDEGATSAGIEIIGDVVS 225 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA---ALITGDTPGAERDVLIENF 296 ++ E ++F+ TVEH +++ A + D E+ I F Sbjct: 226 EWEAKTHEHFGGPVKTIVFSPTVEHGRKLCEAFAAAGYNFQQVSYMDRTDEEQREKIGKF 285 Query: 297 KAQR--FRYLVNVAVLTTGFDAPHVDLIAILRPT-ESVSLYQQIVGRGLRLAP--GKTDC 351 + + LV+ VLT GFD P V + +P +S+S + Q +GR +R GK Sbjct: 286 RRPDSTIQGLVSCGVLTRGFDVPEVRIGISCKPYRKSLSSHMQEMGRVMRTHAESGKDKA 345 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 L LD++GN W D E + Sbjct: 346 LWLDHSGNVERFALD-----------------------VYEVWEHGVGDLDKSEKQDSKP 382 Query: 412 QGWFEDDDGH--REQCDFRFRFKNCPQCNAENDIAARRCRECDTVLV---------DPDD 460 + E ++C R C C E + + D L P D Sbjct: 383 RERNEQTREKVVCQECSGALRGNVCMACGWEKPARSNVVVK-DGELQAFDMAAAAMQPRD 441 Query: 461 MLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITY 496 L+A + V + + KGE + Sbjct: 442 GLRADCLKEPRRVWE-APLRYTMASTRKGEEHARKW 476 >UniRef50_B9MGJ1 EcoEI R domain protein n=4 Tax=Proteobacteria RepID=B9MGJ1_DIAST Length = 827 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 94/449 (20%), Positives = 168/449 (37%), Gaps = 87/449 (19%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHV 58 T R YQ AV+ + + ++V+ TG GK+ ++ + R+L LA Sbjct: 164 TPRYYQLNAVNRAVEAIAAGQDRVLLVMATGTGKTYTAFQIIWRLWKSGAKKRILFLADR 223 Query: 59 KELVAQNH-AKYQ-------ALGLEAD------------------IFAAGLKRKESHGKV 92 L+ Q ++ L A K + ++ Sbjct: 224 NILIDQTMVNDFRPFKGAMAKLSPNAKGVERVDAQGAVSVEDVDLAVNKTTKLVDKSYEI 283 Query: 93 VFGSVQSVA------RNLDAFQGE-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLR 145 Q+V F + F L++VDECHR E+S ++ ILT+ Sbjct: 284 YLSLYQAVTGTEEERNIYKQFSPDFFDLIVVDECHRGSAAEDSAWRDILTYFAGATQ--- 340 Query: 146 LLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP 205 +GLTATP + F + +Y L+ I+ GYL P + + + Sbjct: 341 -IGLTATPKETKDVSNTDY-------------FGEPVYTYSLKQGIEDGYLAPYKVIRVD 386 Query: 206 VVQYDF----------SRLQAQSNGLFSEADLNRELKKQQR--ITPHIISQIMEFAATRK 253 + + F A + +++ AD+NR+L +QR + I++ ++ Sbjct: 387 LDKDTFGWRPTAGMTDKHGHAIEDRIYTGADMNRKLVLEQRDAVVAAKITEYLKATDRYA 446 Query: 254 GVMIFAATVEHAKEIVGLLPAEDAA--------LITGDTPGAERDVLIENFKAQR---FR 302 ++F ++HA + L +A ++ E + ++NF Sbjct: 447 KTIVFCEDIDHAARMRQALSNANADLCATQPKYVVQITGDNIEGKLELDNFIDPEKTYPV 506 Query: 303 YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDYAGNP 360 +++TG DA LI + + +S++L++QI+GRG RL GKT ILD+ Sbjct: 507 IATTSKLMSTGVDAQTCKLIVLDQTIKSMTLFKQIIGRGTRLREDLGKTWFTILDFKRAT 566 Query: 361 HDLYAPEVGTPKGKSDNVPVQVFCPACGF 389 + PVQ++ P G Sbjct: 567 ELFADKDFD-------GEPVQIYEPGSGQ 588 >UniRef50_C3R6R4 DEAD/DEAH box helicase n=33 Tax=Bacteroides RepID=C3R6R4_9BACE Length = 789 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 166/385 (43%), Gaps = 40/385 (10%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR----VLVLAHVK 59 +LR YQQE + H++ ++ +PTG GK+ ++A + R R V ++AH + Sbjct: 7 SLRDYQQEMKSRLFKEWEFHQS-VMVQMPTGTGKTHLLAAVVREFLHRSGTCVWIVAHRR 65 Query: 60 ELVAQNHAKYQALGL---EADIFAAGLKRKE----SHGKVVFGSVQSVARNLDAFQGEFS 112 ELV Q G+ G RK G V S+Q ++RN + Sbjct: 66 ELVQQIEETVARYGMGKEPDKSGKNGRMRKNSMPEESGTVKVLSIQWLSRNWKNMEESPG 125 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L+++DE H + L K P R LG+TATP RL Sbjct: 126 LIVIDEAHHALAETYK-------ELWKRYPEARKLGMTATPCRLNGKGFTD--------- 169 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRL----QAQSNGLFSEADLN 228 LF I + I G+L+ + + + + + + ++G + ++N Sbjct: 170 ----LFDTLITSWSIAEFIGKGWLSAFDYVSIRANSREQRMINSLKKRGADGDYQVKEMN 225 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 L +Q I + + +E A K +++A ++ HA++I A A I TP Sbjct: 226 EVLNRQVSIRR--LYESVEKYANGKKGIVYAVSIAHARQIAACYSAHGVEAVAIDSKTPA 283 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +ER L+E FK R R LVNV + + GFD P V+ + + RPT S+ Y Q VGRGLR + Sbjct: 284 SERRELVEGFKQGRTRVLVNVDIFSEGFDCPDVEFVQLARPTLSLVKYLQQVGRGLRKSG 343 Query: 347 GKTDCLILDYAGNPHDLYAPEVGTP 371 K C+++D G P Sbjct: 344 DKESCMLIDNVGLHRIFGLPVRDRD 368 >UniRef50_B4RYU7 Type I site-specific restriction-modification system, R (Restriction) subunit and related helicase n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RYU7_ALTMD Length = 1141 Score = 287 bits (736), Expect = 5e-76, Method: Composition-based stats. Identities = 95/471 (20%), Positives = 152/471 (32%), Gaps = 76/471 (16%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 RPYQ A+ + F ++ +++V+ TG GK+ L + VL LA Sbjct: 360 RPYQTLAIQSVCERFTLNQRRSLLVMATGTGKTRTTIALVDVLMRAGWVKNVLFLADRNA 419 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNL-----DAFQG--EFSL 113 LV Q ++ L + G++ + ++ L D G F L Sbjct: 420 LVNQAKKEFSKLLPKTSPEILTSATDTLRGRLYLSTYNTMMNLLSVDARDRLFGIGHFDL 479 Query: 114 LIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGD 173 +IVDE HR +Y+ I + + LLGLTATP Y Sbjct: 480 VIVDEAHR---SIYKKYRYIFEYFDAL-----LLGLTATPKSDIDKNTYDIFDQPD---- 527 Query: 174 EKALFRDCIYELPLRYMIKHGYLTPPERLDMPV----VQYDFSRLQAQ------------ 217 D Y L I L PP+ + + + +S L Sbjct: 528 -----GDPTYAYELEEAIADKKLVPPKDVAVDLGFIREGIKYSDLSKDEKEEWESKEELV 582 Query: 218 SNGLFSEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHAKEIVGL 271 +++N+ L + + + E +IFAA +HA+ +V Sbjct: 583 ERDEVLPSEVNKFLF-NKPTVDKALEVLFERGIRVAGGERLGKTIIFAANNKHAEFVVDR 641 Query: 272 LPAED-------AALITGDTPGAERDVLIENFKAQR--------FRYLVNVAVLTTGFDA 316 + A A +IT A+ LIE FK ++ V+V +L TG D Sbjct: 642 INANYPKYKGKLARVITYKEKYAD--SLIEEFKGEKKPADPNCPLSIAVSVDMLDTGVDV 699 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPEVG 369 P V + + +S + Q++GRG RL K + D N G Sbjct: 700 PEVVNLMFFKVIKSKVKFLQMLGRGTRLCESLFGPDDDKVFFKVFDCCKNFEYFEMQPEG 759 Query: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDG 420 S + +F + E + G Sbjct: 760 AKDSGSKTLSQAIFEKRLILSQHLKSNEQFGTDGAELQRSLVENLQNRVAG 810 >UniRef50_A1SJ00 Type III restriction enzyme, res subunit n=3 Tax=Actinomycetales RepID=A1SJ00_NOCSJ Length = 558 Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 158/374 (42%), Gaps = 37/374 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAH 57 + LRPYQ EA + A++VL TG GK++V E+ R R+LV+AH Sbjct: 137 YELRPYQLEAAERIQQDLEDTN-RALLVLATGLGKTVVGGEVIRRHLESHPDARILVVAH 195 Query: 58 VKELVAQNHAKYQALGLE--ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLI 115 +KELV Q + G R S V ++ SV L SL++ Sbjct: 196 MKELVEQLEKALWRHLDKSVPTQVLTGDTRPTSFEGVTVATIDSVLG-LVRTDWRPSLIM 254 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DE H +G+ + L R G+TATP+R K I Sbjct: 255 IDETHHVGETG------MFAQLLDECQDARQFGVTATPWRGDKFDIT------------- 295 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 + F Y L + + GYL + M V D+ ++ S +S +LN+ L Q Sbjct: 296 SRFGQPSYSLGIAEGMADGYLAQVDY-RMYVDNLDWDFVRHASEHGYSIKELNKALFLPQ 354 Query: 236 RITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAED-----AALITGDTPGAE 288 R I+ + + + ++F T+EHA+ + LL D A+ + + Sbjct: 355 R-DEEIVDEFRQAWREIRDPRAIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSRQQ 413 Query: 289 RDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGK 348 R +L+ F+ R + V V G D P V+LIA LR T S ++ Q +GRGLRL GK Sbjct: 414 RQILLNAFRLGRVPIITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLREGK 473 Query: 349 TDCLILDYAGNPHD 362 +LD+ + Sbjct: 474 ESLKVLDFVTDVRR 487 >UniRef50_C3NN84 Type III restriction protein res subunit n=1 Tax=Sulfolobus islandicus Y.N.15.51 RepID=C3NN84_SULIN Length = 763 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 108/582 (18%), Positives = 200/582 (34%), Gaps = 65/582 (11%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKS-LVIAELARLAR----GRVLVLA 56 LR YQ+ AV + F K ++ + TG GK+ +V+A +A+L VL L Sbjct: 140 ALDLRNYQKIAVQQIITSFLSGKKRMLVEMATGTGKTEVVMAAIAKLLDEGKVKNVLYLV 199 Query: 57 HVKELVAQNHAKY-QALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ----GEF 111 L Q + ++ LG + +I + ++ +VQ + + + F+ F Sbjct: 200 DRDSLATQTYQRFNARLGDKYNIRKLSGDINDLSADIIISTVQMLYVD-EKFKLFNSDHF 258 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+++DE HR + +++ + K +LGLTATP + Sbjct: 259 QLIVLDEAHR---SYYGDWHKVVQYFNKAA----VLGLTATPKIDKDVDNF--------- 302 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 A F I+ +K GYL + D + F DL +++ Sbjct: 303 ----AYFGYPIFRYTYSRGVKDGYLADTIYYKF-LTNVDIYGIH-DLGYDFDPNDLGKKV 356 Query: 232 KKQQRITPHIISQIME-----FAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPG 286 I + E K ++FAA+++HA+ + + L+ Sbjct: 357 DIP-MRNELIAEKYFEAINFKETKELKKAIVFAASIKHAENLRLAFIRKYNELMGYSPDN 415 Query: 287 AERDVLIE--------------NFK--AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTES 330 AE + + F+ R + V +L+TG DAP V++I + RPT+S Sbjct: 416 AEAEEIFRSIHSAIPNHEELVREFQSPNSRIKVAFTVDLLSTGVDAPDVEVIVMARPTKS 475 Query: 331 VSLYQQIVGRGLRLAPG----KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPA 386 LY Q+ GRG R+ K ++D+ E P D V + Sbjct: 476 RVLYLQMKGRGTRIYKEGNKVKDKFYLIDFVDTWRL--ENEEDKPITNEDIVKEEEEEEK 533 Query: 387 CGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQ--CNAENDIA 444 + G T + + E+ + P+ N I+ Sbjct: 534 --EISELMGSTEEPQRTTAKKEVKREQKREEMVILDIPVSIVYAEVITPENFKNELKGIS 591 Query: 445 ARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADV 504 + R+ L +++ + + A+ G +LK + + Sbjct: 592 EQVVRQVKAYLQAQEEVQIKKTQFETAVRSFDYFYRKNGGKTLNENYLKELEAFLNEQGI 651 Query: 505 SERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQ 546 +E T + A + F+ P +++ + Sbjct: 652 TEDVLKDTYGEPDATLKDFVEVALGLKTFPTPEERKRNLIKE 693 >UniRef50_A0KWT8 Type III restriction enzyme, res subunit n=7 Tax=Gammaproteobacteria RepID=A0KWT8_SHESA Length = 1138 Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats. Identities = 92/434 (21%), Positives = 152/434 (35%), Gaps = 75/434 (17%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 R YQ E + F + A++V TG GK+ V LA+ R+L L KE Sbjct: 362 RRYQLETISRVHETFELKRRKALVVQATGTGKTRVSIALAKSLMDAKWVKRILFLCDRKE 421 Query: 61 LVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQ-GEFSLLIVDE 118 L Q + G++ + K+ + +V + + + F G F L+I DE Sbjct: 422 LRKQADKAFVQFLGVKPYVVGKSDKKYKDTARVFIATYPGMMGIYEDFDVGYFDLIIADE 481 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 HR + + + + + +GLTATP + + Sbjct: 482 SHR---SIYNVFGNLFKYFDCLQ-----VGLTATPVEMVSRSTCNLFDCD---------Y 524 Query: 179 RDCIYELPLRYMIKHGYLTPPERLDMPVV------------QYDFSRLQAQSNG----LF 222 ++ PL I G+L P E + M + L+AQ F Sbjct: 525 KEPTANYPLEKAIGEGHLVPFEIVTMTTKFMREGMNQRSLSDEQIAELEAQGEDPNEFEF 584 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATRK------GVMIFAATVEHAKEIVGLLPAE- 275 A+++ + + I+ +ME K +IFA + HA+ + L Sbjct: 585 ESAEIDNAVLNKDT-NRKILRNLMENGIKDKDNQLIGKSIIFARKINHARLLKELFDEMY 643 Query: 276 ------DAALITGDTPGAERDVLIENFKAQR------------FRYLVNVAVLTTGFDAP 317 +I + P AE LI+ FK ++V +L TG D P Sbjct: 644 PELSQGFCEVIHSEEPRAE--ALIDQFKITEEEKAKDSSLPDPITLAISVDMLDTGIDVP 701 Query: 318 HVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVGT 370 V + +P +S + Q++GRG RL KT LI D+ N Sbjct: 702 SVVNLVFAKPVKSKVKFWQMIGRGTRLCEDLFGKGKHKTRFLIFDHWNNFDYFEFNYEEV 761 Query: 371 PKGKSDNVPVQVFC 384 + ++ + F Sbjct: 762 EPSNTKSLAQKRFE 775 >UniRef50_A8ZY57 Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY57_DESOH Length = 787 Score = 287 bits (734), Expect = 9e-76, Method: Composition-based stats. Identities = 101/411 (24%), Positives = 157/411 (38%), Gaps = 43/411 (10%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-------RGRVLVLAHV 58 RPYQ A+ TL HF A++++ TG GK+ V+ +L R +L L Sbjct: 155 RPYQDVAIHKTLWHFAGGNNRALLLMATGTGKTFVVFQLVWKLLNTSILKRQHILFLTDR 214 Query: 59 KELVAQNHAKYQALGLEADIFAAGLKRKESH---GKVVFGSVQSVARNLD-------AFQ 108 L Q + + A + + GKV F + Q++ LD Q Sbjct: 215 NSLKDQAYRAFAAFSTDERVTINKDTVANGQHQVGKVFFANYQNLDEELDGKKIFEHYDQ 274 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 F L+I+DECHR G + +L H +GLTATP L +G + Sbjct: 275 DFFDLVIIDECHRSG---FGDWFGVLEHFNSALQ----MGLTATPRELEEGR--RVLTEE 325 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 R D F IY L+ I+ GYL P L+ + D ++ A+ Sbjct: 326 EKRRDTYEYFGAPIYTYSLKQAIEDGYLVPY-LLEERITNVDEEGYTGLDGKHYTTANFE 384 Query: 229 RELKKQQR---ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLP------AEDAAL 279 R+++ R I + + ++ + ++F HA + L + Sbjct: 385 RDIRMPDRTTAIAEDLWEILGQYDLRDEKSIVFCVDDTHAAFMAAELRRLSGDDDYAGRI 444 Query: 280 ITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVG 339 + + + + + + R V V +LTTGFDAP V I +RP S LY+Q+ G Sbjct: 445 VRSERNSHQLERNFATVGSTKPRVAVTVDLLTTGFDAPDVKNIVFVRPLRSAILYKQMKG 504 Query: 340 RGLRLAP--GKTDCLILDYAG-----NPHDLYAPEVGTPKGKSDNVPVQVF 383 RG RL K I DY+G + P + P + Sbjct: 505 RGTRLCEDINKRYFTIFDYSGASQLEDAEFDGHPANRQKGAQPKTKPRKKT 555 >UniRef50_Q8HAK4 Gp58 n=5 Tax=Caudovirales RepID=Q8HAK4_9CAUD Length = 614 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 208/474 (43%), Gaps = 43/474 (9%) Query: 4 TLRPYQQEAVDATLNHFR-RHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAH 57 T R YQ EA D T + + TG GKSL+ A L + RV+ LA Sbjct: 5 TPRWYQAEAADELFGALATAKNTNPIAAIVTGGGKSLLNAMLIERIAQTWPQARVMSLAP 64 Query: 58 VKELVAQNHAKYQALGLEA-----DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFS 112 EL+ QN + +A A I+ AGL+ K+ + +F + QSVAR F F Sbjct: 65 SMELIKQNVEEARAFWSPAMVARLGIYCAGLRMKDRMHQYIFATPQSVARQAKRFGP-FD 123 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 ++VDE H + + + + I+ NPH+R +G+TAT F + G Sbjct: 124 FVLVDEAH-LFNIDMKTARTIVDTFRAANPHVRFVGMTATDFIMKGLKAVPLTQCG---- 178 Query: 173 DEKALFRDCIYELP----LRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLN 228 LF +Y+L +++ GYL+P + Q D ++ + G F EA+L Sbjct: 179 ----LFDAKVYDLTSGRNFNRLVREGYLSPVVSPSLRFPQIDTEGVKTK-GGDFDEAELA 233 Query: 229 RELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPG 286 R + +T + +E A RK M FA +EHA I L A +I G+ Sbjct: 234 R---RAMDVTRECVRVALEHAPDRKHFMWFAVNIEHAHMIEQALLDAGESAVVIHGELEK 290 Query: 287 AERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP 346 +ER + ++ + ++ R++V+VA+LTTGF+AP VD + LRPT S+ L++QIVGRGLR Sbjct: 291 SERVLGVDEYLKKQHRHIVSVAMLTTGFNAPFVDCLVALRPTRSLVLWRQIVGRGLRPYA 350 Query: 347 GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 GK + L+LD GN A G D+ C + + DGT Sbjct: 351 GKENILVLDAGGNFGRHGAI--NEEIGAGDSRAGLWVC-TSEEVRSPFPVKLPDGTTAP- 406 Query: 407 FGRRCQGWFEDDDGHREQCDFRFRFKN------CPQCNAENDIAARRCRECDTV 454 GR G + + +F R C ND CR+C Sbjct: 407 -GRERSGIRFPINSPEQP-EFDLRVILGLMEPDSEGCGYLNDAEHMTCRQCGRP 458 >UniRef50_P24125 51.5 kDa protein n=5 Tax=root RepID=V51K_BPL79 Length = 452 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 104/482 (21%), Positives = 184/482 (38%), Gaps = 63/482 (13%) Query: 28 VIVLPTGAGKSLVIAELARLA---RGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLK 84 +I P G+GKS+VI+E+ +LA GRVL L H KEL+ Q ++ G+ + Sbjct: 1 MIQSPPGSGKSVVISEITKLATEKGGRVLFLVHRKELIDQITNSFKVHGVPLNQVELL-- 58 Query: 85 RKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHL 144 +V L + + +L+I DE H + + YQ+I + Sbjct: 59 -----------TVGKAKNRLSVLR-KPTLIITDEGHHG---KAATYQKIYE----FYADV 99 Query: 145 RLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDM 204 LG TATP+R+ K + I + ++I + L P + + Sbjct: 100 PRLGFTATPWRMSG-------------DGFKDTYDYMIEGKTVEWLINNKRLAPYQYYSL 146 Query: 205 PVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEH 264 P D S+L+ + NG +S ++ L + I ++ + ++ A + +++A +VE Sbjct: 147 P--SIDISKLRIK-NGDYSNQSIDDALG--KTIFGDVVQEYVKHA-NGQKAILYAHSVEA 200 Query: 265 AKEIVGLLPAEDAALIT--GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLI 322 ++ + TP ERD L+ +F+ R + L NV +++ GFD P + Sbjct: 201 SQSFAKEFQEAGIKAVHVDAKTPKNERDKLMLDFRNGRIKVLCNVDLISEGFDVPDCTVT 260 Query: 323 AILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEV----------GTPK 372 + RPT+S+ L+ Q R +R KT +I+D N H P+ G K Sbjct: 261 ILCRPTKSLVLFLQQSMRSMRYQHRKT-AIIIDNVMNWHAHGLPDTHHDWKDYFEGGWKK 319 Query: 373 GKSDNVPVQVFCPACGFANTFWGKT---TADGTLIEHFGRRCQGWFEDDDGHREQCDFRF 429 N+ CP C K IE + + E + +E+ Sbjct: 320 KGQKNIVQAKQCPDCSAMWPLSQKMCNLCGHDFSIEEKHEKLRLEAELELIEKEK----V 375 Query: 430 RFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKG 489 + K + +D+ V+ + L L + + K Sbjct: 376 KLKILSEKKFGSDLKKNWEIAQARAKVNKGNPLMKLLYFYAKSDWASASIEEIAEVTGKS 435 Query: 490 EW 491 + Sbjct: 436 NY 437 >UniRef50_C2CJE8 Type I site-specific deoxyribonuclease n=5 Tax=Firmicutes RepID=C2CJE8_9FIRM Length = 781 Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats. Identities = 89/474 (18%), Positives = 173/474 (36%), Gaps = 69/474 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAH 57 + R YQ+ A++ L + K ++V+ TG GK+ ++ + ++L LA+ Sbjct: 167 YPPRYYQRIAINRILEEIAKGKDRLLLVMATGTGKTYTAFQIVYRLLQSGQKKKILYLAY 226 Query: 58 VKELVAQN----HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR-----NLDAF- 107 LV Q A + + + + + + +V F Q + + Sbjct: 227 RNILVDQTISGDFAPLKKVIHKVNF-SKDDPTTITSHQVYFSLYQQLIGEDGKEHFSELF 285 Query: 108 -QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 F L+IVDECHR E+S +++IL + + +G+TATP Sbjct: 286 RPDFFDLIIVDECHRGSAKEDSSWRRILEYFKSASQ----IGMTATPK------------ 329 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----------QYDFSRLQA 216 F + IY LR I+ G+L P + +++ Q D S + Sbjct: 330 -ETKYVSNSHYFGEPIYSYSLREGIEDGFLAPFKVINITTDIGESWRPYKGQLDKSGKEI 388 Query: 217 QSNGLFSEADLNRELKKQQRI--TPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPA 274 + +++ +D + + + R I+ ++ ++F T E A+ + L Sbjct: 389 EDR-IYNNSDYDYNIVIEDRTYQVAKEITAYLKATDRMAKTIVFTPTEEAAERMRVALVN 447 Query: 275 EDAALITGDTPGAERDVLIENFKAQRFR-----------YLVNVAVLTTGFDAPHVDLIA 323 + L+ + R + + + +L+TG D V LI Sbjct: 448 LNNDLVKENPDYCVRITGSDEYGKSKLDYFISISSQYPVIATTSKLLSTGVDTKMVKLIV 507 Query: 324 ILRPTESVSLYQQIVGRGLRL--APGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQ 381 + S++ ++QI+GRG RL GKT +++D+ P+ P D + Sbjct: 508 LDTMLNSMTEFKQIIGRGTRLREKEGKTHFVLMDFRNVSRLFADPDWDGPLIIDDGFNPK 567 Query: 382 VFCPACGFA----NTFWGKTTADGTLIEHFGRRCQGWFE-----DDDGHREQCD 426 T G +I+ G + + + D + +C+ Sbjct: 568 KPNDKEAHEPPETYTTGGGINRSVPIIDKNGLKVKIINKTVSIYDTNSKLLRCE 621 >UniRef50_Q027W9 Type III restriction enzyme, res subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027W9_SOLUE Length = 570 Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 164/385 (42%), Gaps = 43/385 (11%) Query: 4 TLRPYQQEAVDATLNHFRRHKTP-AVIVLPTGAGKSLVIAELARLARG-----RVLVLAH 57 LR YQ+ A+ + L K A++V+ TG GK+ V AE R R R LVLAH Sbjct: 139 QLRGYQESAIASILEVAVSGKRRSALVVMATGLGKTFVAAESYRRMRETHPTLRALVLAH 198 Query: 58 VKELVAQNHAKYQALGLEADIFAAGLKRK--ESHGKVVFGSVQSVARNLD---AFQGEFS 112 +LV Q + +++I + + + F + SVA L Sbjct: 199 TNDLVYQLERAFWPCLDKSEITGVWNGYEVPDPEASLTFACIDSVASKLQVSGRLDLGVD 258 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPH-LRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDECH G DE Y+ +L L + L+G+TATP+R I+ Sbjct: 259 LVIVDECHHAGSDE---YRVVLEALRCGSQDGPFLIGMTATPWRPDGTSIH--------- 306 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNREL 231 +LF + + + + +K G+L+ + M V ++ L + + LNR + Sbjct: 307 ----SLFGEPVSCVDIVQGLKMGWLSNVDY-RMHVDNINWQELNRVHH--LTPRGLNRTI 359 Query: 232 KKQQRITPHIISQIME--FAATRKGVMIFAATVEHAKEIVGLLPAED---AALITGDTP- 285 Q+ ++ ++ E + ++F ++HA + + A + +P Sbjct: 360 FIQE-WDDAVVQKLKETWYEIPHARAIVFCGNIDHAITMRDRVNGVGFARAEALYAGSPG 418 Query: 286 -----GAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGR 340 A+R ++ +F L V +L G D P V++ R T S ++ Q +GR Sbjct: 419 APRLSHAQRSKILADFHDGHAGVLCAVDLLNEGIDLPDVNICVFQRVTHSRRIFVQQLGR 478 Query: 341 GLRLAPGKTDCLILDYAGNPHDLYA 365 GLRLA GK ++LD+ + A Sbjct: 479 GLRLASGKDRVIVLDFVSDVRRFAA 503 >UniRef50_B5GJX6 Type I site-specific deoxyribonuclease protein R n=1 Tax=Streptomyces sp. SPB74 RepID=B5GJX6_9ACTO Length = 1052 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 92/458 (20%), Positives = 160/458 (34%), Gaps = 83/458 (18%) Query: 6 RPYQQEAVDATLNHFRRHKTP-AVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 RPYQ A+ F + ++ A++V+ TG GK+ L RVL LA + Sbjct: 259 RPYQLRAIQRVGETFEQDRSRQALLVMATGTGKTRTTVALVDQLMKAGWARRVLFLADRQ 318 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE--------- 110 LV Q ++ + A+ L K + +V + Q++ R +D G+ Sbjct: 319 ALVTQAMKAFKENLPNTPV-ASLLDDKTATARVYLSTYQTMLRQIDVIDGDGRRRYGPGH 377 Query: 111 FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMV 170 F LL++DE HR ++Y ++ + + LLGLTATP Y+ Sbjct: 378 FDLLVIDEAHR---SVYAKYGELFRYFDSL-----LLGLTATPKDEIDHNTYRLFALED- 428 Query: 171 RGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----QYDFSRLQAQSNGLFSEAD 226 L GYL P+ + +P+ ++ L + + + Sbjct: 429 --------GVPTDSYGLDEAAGEGYLVLPKAVKVPLRFMEHGIRYADLSEEEKAEWDAKE 480 Query: 227 LNRELKKQQRI----------TPHIISQIM----------EFAATRKGVMIFAATVEHAK 266 + + + + +++ E +IFA HA+ Sbjct: 481 WTEDGEIPDAVGRHDMNTYLFNEDTVDKMLQTLMTRGHRVEGGDRIGKTIIFAKNHAHAR 540 Query: 267 EIVGLLPAED-------AALITGDTPGAERDVLIENFKAQR-----FRYLVNVAVLTTGF 314 I A A +IT A L++ F R ++V +L TG Sbjct: 541 YIEERYNANYPRDGGHTARVITYKETYAH--TLLDAFADPRNPPRAPDIAISVDMLDTGI 598 Query: 315 DAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG------------KTDCLILDYAGNPHD 362 D P V + +P S + + Q++GRG RL PG K D + D+ GN Sbjct: 599 DVPEVVNLVFAKPVFSRTKFWQMIGRGTRLRPGLYGPGPDNPAHDKQDFFVFDFCGNIDF 658 Query: 363 LYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD 400 + + ++ + Q+ + D Sbjct: 659 FNSRLEHSEGRRATTLTEQLRHRQLDLIRCLDKRQQPD 696 >UniRef50_C3MF99 Putative restriction endonuclease type I with R subunit / type III with Res subunit n=1 Tax=Rhizobium sp. NGR234 RepID=C3MF99_RHISN Length = 1140 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 107/482 (22%), Positives = 160/482 (33%), Gaps = 103/482 (21%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVKE 60 RPYQ++A+ A N + ++ + TG GK+ L R+L L K Sbjct: 431 RPYQEDAIAAIENAVVAGQRDILVSMATGTGKTRTSIALMYRLLKHKRFRRILFLVDRKA 490 Query: 61 LVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE-- 110 L Q + +E + K E +V +VQS+ + Sbjct: 491 LGKQTSDALETTEIEGMLNFAQIYKVAGLEKKVPEDEDQVQVATVQSLIARILNEPDPAK 550 Query: 111 ------FSLLIVDECHRIGDDEE----------------SQYQQILTHLTKVNPHLRLLG 148 F +IVDE HR + S Y+QIL + V + Sbjct: 551 RPTPGTFDCIIVDEAHRGYTLDAELRESDVGFRNLDDYQSAYRQILDYFDAVK-----VA 605 Query: 149 LTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP---------- 198 LTATP + +F ++ R + GYL Sbjct: 606 LTATP-----------------ALHTREIFGHPVFHYGYRQAVVEGYLNDHLPPKRITTA 648 Query: 199 -------------PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQI 245 E +D Q D L + + + AD N+ + + + I Sbjct: 649 LSEAGIHFEGGEEVEIIDRTTGQIDLFELPDEVSLDYDVADFNKRVY-SEAFNRMVCRAI 707 Query: 246 MEFAATRK--GVMIFAATVEHAKEIVGLLPAE-------------DAALITGDTPGAERD 290 K +IFAA HA ++V LL E ITG+ A D Sbjct: 708 ATEIPPSKPGKTLIFAARDAHADDLVRLLVEELQEEYGNDAVPHGMVMKITGNVDKA--D 765 Query: 291 VLIENFKAQR-FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--G 347 LI FK +Y+V V +LTTG D P + + +R +S LY Q++GR RL P G Sbjct: 766 DLILKFKNDPHPKYVVTVDLLTTGIDVPTICNLVFVRRVKSRILYDQMIGRATRLCPEIG 825 Query: 348 KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHF 407 K I D +L P ++ + A T K+ G +I Sbjct: 826 KEHFRIFDAVDLYAELQEMTDMRPVVVKPDISLGQLVTDLDKAETEEDKSWVAGQVIVRM 885 Query: 408 GR 409 Sbjct: 886 RA 887 >UniRef50_Q112D5 Type III restriction enzyme, res subunit n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q112D5_TRIEI Length = 1119 Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats. Identities = 107/535 (20%), Positives = 181/535 (33%), Gaps = 84/535 (15%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR-----GRVLVLAHVKE 60 R YQ+EA+ F + A++V+ TG GK+ + L RVL LA Sbjct: 352 RCYQKEAICCIKEIFDNKQRKALLVMATGTGKTRTAVSIVELLERANWVKRVLFLADRNV 411 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKE-SHGKVVFGSVQSVARNLDAFQGE--------F 111 L+ Q + + K+++ + +VF + +++ ++A G+ F Sbjct: 412 LLTQAQGVFNSNLNSITTANLTEKKQDAENATIVFSTYPTISNRINATDGDKRLFSPGYF 471 Query: 112 SLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVR 171 L+IVDE HR +Y+QI + + LLGLTATP Y Sbjct: 472 DLVIVDEAHR---SIYRKYRQIFQYFDAL-----LLGLTATPRNEVDRDTYSIFDLEP-- 521 Query: 172 GDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV----QYDFSRLQAQSNGLFSEA-- 225 + L IK GYL PP +++P +S LQ + + E Sbjct: 522 -------GVPTFAYELDSAIKDGYLVPPSGVEVPFKFMRAGIRYSELQPEEKTAYEERFA 574 Query: 226 --------------DLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHA 265 LN L + + +ME +IFA +HA Sbjct: 575 DAETGEVPDKINATALNTWLFNISTV-DQALQLLMERGLKVEGGDRLGKTIIFARNHKHA 633 Query: 266 KEIVGLLP-------AEDAALITGDTPGAERDVLIENFKAQRFR--YLVNVAVLTTGFDA 316 + I + A +I D+ + L+++F + V+V +L TG D Sbjct: 634 EFISERFNANYPHYKGQFAQII--DSQSSYSQSLLDDFSNADKQPIIAVSVDMLDTGVDV 691 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAPG-------KTDCLILDYAGNPHDLYAPEVG 369 V + +P S + Q++GRG RL P KT+ L+ D N Sbjct: 692 REVVNLVFFKPVYSRIKFNQMIGRGTRLCPNLFAPGDDKTEFLVFDLCSNFSYFEQQIDE 751 Query: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFED--DDGHREQCDF 427 D++ ++ + + L E ++ H +Q + Sbjct: 752 KNVKIPDSLTTKLVKSRLELSQLVPTGELKNNLLDELHQYINSMPKDNFLVRPHLQQVEE 811 Query: 428 RFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDALVLRCSGMSLQ 482 + + N++ L + L L L C + L Sbjct: 812 FSQRER------WNELGESDQEIIGESLASLPNGLPKESHLNKRFDLICVKLQLA 860 >UniRef50_P08956 Type I restriction enzyme EcoKI R protein n=52 Tax=Gammaproteobacteria RepID=T1RK_ECOLI Length = 1170 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 102/489 (20%), Positives = 161/489 (32%), Gaps = 94/489 (19%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELA-----RLARGRVLVLAH 57 LR YQ++AV A + + ++ + TG GK+ + R+L L Sbjct: 443 LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVD 502 Query: 58 VKELVAQNHAKYQALGLEAD-------IFAAGLKRKESHGKVVFGSVQSVARNLDAFQG- 109 + L Q ++ + D I K E K+ +VQS+ + Sbjct: 503 RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEP 562 Query: 110 ----EFSLLIVDECHRIGD----------------DEESQYQQILTHLTKVNPHLRLLGL 149 + ++VDE HR D S Y++IL H V + L Sbjct: 563 MPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVK-----IAL 617 Query: 150 TATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHG--------------- 194 TATP +F + +Y R + G Sbjct: 618 TATP-----------------ALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRN 660 Query: 195 -----YLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFA 249 YL+ E+++ Q + + + F AD NR L + +++ + Sbjct: 661 AQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPA-FNRAVCNELTNYL 719 Query: 250 A--TRKGVMIFAATVEHAKEIVGLLPAED-----------AALITGDTPGAERD--VLIE 294 + ++F T HA +V L A ITGD R +I Sbjct: 720 DPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMIT 779 Query: 295 NF-KAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 F K + +V V +LTTG D P + I LR S LY+Q+ GR RL P KT Sbjct: 780 RFNKERLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSF 839 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 I D L + + P V +Q + T+ + EH + Sbjct: 840 KIFDCVDIYSTLESVDTMRPVVVRPKVELQTLVNEITDSETYKITEADGRSFAEHSHEQL 899 Query: 412 QGWFEDDDG 420 + G Sbjct: 900 VAKLQRIIG 908 >UniRef50_A6FFB6 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FFB6_9GAMM Length = 555 Score = 284 bits (726), Expect = 8e-75, Method: Composition-based stats. Identities = 102/409 (24%), Positives = 173/409 (42%), Gaps = 41/409 (10%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGRVLVLAHVKELV 62 LR YQ+E V+ +L+ +++ A V TGAGK+ V++ +A RVL+L H+ EL Sbjct: 1 MKLRRYQEEMVEKSLDALLKYQGVA-CVAATGAGKTCVLSYIAAQFN-RVLILQHLDELK 58 Query: 63 AQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECHRI 122 QN + + + D + + FG +Q+V LD + L+I+DECHR+ Sbjct: 59 QQNAETFGWVNPKLDYGFIDPDNNDFNKPYAFGMMQTVVHRLDDM-THYDLIIIDECHRL 117 Query: 123 GDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCI 182 G Y++I+ +NP +++ G +AT R + + ++ Sbjct: 118 G---AISYEKIIERARVINPDVKVFGTSATIERRDQKSLSKYL-------------DVVA 161 Query: 183 YELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHII 242 +++ L +I+ GYL PP + V + + + + + I+ Sbjct: 162 HQVQLDDLIRQGYLVPPRAFVIKVDGVE-------AAANAKDDEQVEAVLNTDVTNQRIV 214 Query: 243 SQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKAQR 300 ++ E A+TR + F TV HAK++ A ++G ER ++ F+ Sbjct: 215 NEWKERASTR-LTVAFCQTVNHAKDVAQAFNDNGIAATHVSGVMKPRERKKRLKAFERGE 273 Query: 301 FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRL-----APG--KTDCLI 353 ++ L N +LT G++ P V + ILR + S Q+ GR LR P K D LI Sbjct: 274 YQVLTNATLLTEGWNCPPVSCLLILRGSSSKGALIQMAGRVLRKVNPSDYPNVIKHDALI 333 Query: 354 LDYAGNPHDLYAPEVGTPKGKSD-----NVPVQVFCPACGFANTFWGKT 397 LD+ + G + + CP CG A K Sbjct: 334 LDFGVSLIRHGNLNAGDRLTFDKHDYDAEIDAALQCPCCGGAIEPKDKQ 382 >UniRef50_C6JN68 Type I restriction enzyme EcoKI subunit R n=4 Tax=Fusobacterium RepID=C6JN68_FUSVA Length = 1088 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 98/569 (17%), Positives = 172/569 (30%), Gaps = 108/569 (18%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAH 57 LR YQ EAV A + + ++ + TG GK+ + R+L + Sbjct: 378 LGLRNYQIEAVKAVEEALIKGQNKVLLTMATGTGKTRTALAILYRLLKSKKYNRILFVVD 437 Query: 58 VKELVAQNHAKYQALGLEA--------DIFAAGLKRKESHGKVVFGSVQSVARNLDAFQG 109 L Q + + ++ DI K+ E K+ +VQ + + + Sbjct: 438 RASLGEQAKDTFDNVKVDQQLKISEIYDIKGLKDKKPEDTTKIHVATVQGLIKRVLYSND 497 Query: 110 E------FSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRLL 147 + + +++DE HR + +S+Y+ ++ + + Sbjct: 498 DAITVGQYDCIVIDEAHRGYILDRIPTEEEAFFNDEKEYQSKYRSVIDYFEADK-----I 552 Query: 148 GLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVV 207 LTATP +F + +Y+ R + G L E + Sbjct: 553 ALTATP-----------------AVHTYEIFGEPVYQYSYRQAVLDGNLVDFEPPYRIIT 595 Query: 208 QYDFSRLQAQSNGLFSE-----------ADLNRELKKQ----------QRITPHIISQIM 246 + + + DL EL + + S ++ Sbjct: 596 RLSSDGIHFEKGSEIKVFDSETQEIKVIKDLKDELDFDVDKFNTKVITEGFNRAVCSALV 655 Query: 247 EFAATRK--GVMIFAATVEHAKEIVGLLPAED------------AALITGDTPGAERDVL 292 + ++FAAT EHA +V +L E ITG + D L Sbjct: 656 NYINPEGPEKTLVFAATDEHADMLVRILREEFDKLEMYSMNNDMIEKITG--SVKDVDKL 713 Query: 293 IENFKAQRFR-YLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKT 349 I+ FK + + V V +LTTG D P + + LR S LY+Q++GR RL K Sbjct: 714 IKKFKNENYPTIAVTVDLLTTGIDVPKICNLVFLRKVRSRILYEQMIGRATRLCEEINKE 773 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFAN-TFWGKTTADGTLIEHFG 408 I D DL P + ++ + +I Sbjct: 774 YFKIYDAVDIYSDLKDYTDMKPVVADPKINLKKLLGDLDKIDGNDKNIGYLLDEVIGRIQ 833 Query: 409 RRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRL 468 R+ + H + R E P + + L Sbjct: 834 RKKNRIKKAGSDHLKTFSGYMR-------GEEISDIDEYIDYLKNT---PKEKIYETLMK 883 Query: 469 KDALVLRCSGMSLQHGHDEKGEWLKITYY 497 + +L G+ + E Y Sbjct: 884 EKKFLLHLDGLKIAEKEKVIYEHTDEIKY 912 >UniRef50_C3X1S4 Helicase n=2 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1S4_OXAFO Length = 496 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 100/467 (21%), Positives = 171/467 (36%), Gaps = 71/467 (15%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLAR---GRVLVLAHVK 59 LRPYQ +A++ + R ++ PTGAGK+L+ A L + R R + + Sbjct: 4 IELRPYQLDAIERLRDGVRGGFKNQILCAPTGAGKTLIGASLIQECRNKGKRAVFVCDRI 63 Query: 60 ELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDEC 119 L+ Q ++ G++ + R + + S Q++AR + L+I+DEC Sbjct: 64 NLIDQTSLRFDEYGIDHGVIQGNHWRTRLYEPIQIASAQTLARRQW---PDADLIIIDEC 120 Query: 120 HRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFR 179 H I + + N + ++GLTATPF L+ Sbjct: 121 HTISETVKK---------RISNRNSNVVGLTATPF----------------TKGLGKLYD 155 Query: 180 DCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITP 239 + + + +I G+L+ + R+ A G + E + ++ + + Sbjct: 156 NLVNVTSTQALIDEGFLSGYRIYACKEPDMEGVRVVA---GEWEEKETSK---RALEVVG 209 Query: 240 HIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFK 297 + + +E K + HA+E+ A A T T ER ++E F+ Sbjct: 210 DCVKEYLEHC-NGKKFICAGVNTAHAEELQRQFMAAGILCANYTYKTSDEERREIVEEFR 268 Query: 298 AQR--FRYLVNVAVLTTGFDAPHVDLIAILRPTE-SVSLYQQIVGRGLRLAPGKTDCLIL 354 +R L+ V T GFD P V+ I + RP S++ + Q+ GRGLR+ P K +C++L Sbjct: 269 KPESVYRGLITVTAATKGFDVPDVECIIMARPLRNSLAEHIQLFGRGLRIHPDKKECIVL 328 Query: 355 DYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGW 414 D++GN G F T + R + Sbjct: 329 DHSGNCLRFMDEMQGF----------------------FQSGATELDDGKQKT--RKKKN 364 Query: 415 FEDDDGHREQCDFRFRFKN----CPQCNAENDIAARRCRECDTVLVD 457 ED + C CP C E L + Sbjct: 365 PEDIEDKYMTCPTCKALHAASPFCPNCGHEYPKRKSDVVHRAGTLQE 411 >UniRef50_Q8EUU6 Type I restriction-modification system R subunit n=1 Tax=Mycoplasma penetrans RepID=Q8EUU6_MYCPE Length = 622 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 94/458 (20%), Positives = 177/458 (38%), Gaps = 67/458 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLAHVK 59 R YQ+ A++ T+ + K ++VL TG GK+ V ++ + ++L LA Sbjct: 7 PRYYQRVAINKTVEEVAKGKNKLLLVLATGTGKTYVAFQIIWRLWKSGIKKKILYLADRN 66 Query: 60 ELVAQN-HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR-----NLDAF-----Q 108 L+ Q ++ + ++ + ++ ++ Q ++ NL+ Sbjct: 67 ILIDQTIAGDFKPF--KNSLYKIEKRNMDTSYQIYLSLYQQLSESNEEDNLELLKRSFKP 124 Query: 109 GEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 F L+IVDECHR +S +++IL + +G+TATP + + Sbjct: 125 DFFDLIIVDECHRGSARNDSNWRKILEYFDSATK----IGMTATPKETSEISNIDY---- 176 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD----MPVVQYDFSRLQAQSNGL--- 221 F + IY L+ I GYL P E + + Y + + G Sbjct: 177 ---------FGEPIYTYSLKDGINDGYLAPFEVIRFNTNIDSFGYRPEKGKLDVEGNLVE 227 Query: 222 ---FSEADLNRELKKQQR--ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED 276 ++ D+N ++ ++R + I+ ++ K ++F +EHA+ + L E+ Sbjct: 228 DRFYNPRDINTKIVIEERDKLVAKCITDFLKKTDRNKKTIVFCVDIEHAERMRRALANEN 287 Query: 277 AAL----------ITGDTPGAERDVLIENFKAQRFR---YLVNVAVLTTGFDAPHVDLIA 323 + L ITGD + + ENF + +LTTG + +I Sbjct: 288 SDLCAKDSRYVMRITGDESTGKGES--ENFCDDDLDYPTIVTTSKLLTTGVNCRTCKVIV 345 Query: 324 ILRPTES--VSLYQQIVGRGLRLAPGKT--DCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 + ++ ++QI+GRG R+ K ILD+ G + P+ KS + Sbjct: 346 LDNNFGENGMTEFKQIIGRGTRIQEDKNKLYFTILDFNGASRFFADEKFNGPEIKSLDYD 405 Query: 380 VQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFED 417 ++ F GF F D ++ E+ Sbjct: 406 LKDF-TGDGFTYNFPEDEIDDTEDGIETRKKIYVNSEE 442 >UniRef50_B4WJ71 Type III restriction enzyme, res subunit family n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WJ71_9SYNE Length = 544 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 97/402 (24%), Positives = 160/402 (39%), Gaps = 36/402 (8%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL---ARLARGRVLVLAHVKE 60 LRPYQ+ + I+ TGAGK+++ ++ A A R++ L H+ Sbjct: 22 KLRPYQETLIKDLYKELNAGHKRVAIIAGTGAGKTVISGQICAHAEAAGKRLMFLVHLDV 81 Query: 61 LVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIVDECH 120 LV Q + K +A GL+ AG + + S+Q++A+ + ++ DE H Sbjct: 82 LVGQTYEKMKAFGLQCGFIKAG-WEENRDAPIQIASIQTMAKRRWWQKWPADVVFYDEGH 140 Query: 121 RIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRD 180 + + +TK + + L +TATP RLGK + + + Sbjct: 141 ITLFSQVGK-----KVMTKTHANAVHLVMTATPLRLGKEQLGDYLETLVSSPVPNV---- 191 Query: 181 CIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPH 240 + + GYL+ + MP + G + E DL + + + Sbjct: 192 ---------LQEMGYLSTMKYYSMPRDSMANLEAVKTARGDYDEQDLKNACDRIE-LVEK 241 Query: 241 IISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED--AALITGDTPGAERDVLIENFKA 298 I+ + K + F +EHA + A + G+T ER L + K Sbjct: 242 IVQEWFR-IGKGKRTIAFCVDIEHANHVAAEFQKAGISAETVDGNTSIKERKRLYQALKV 300 Query: 299 QRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDCLILDY 356 L + V++ GFD P V++ +LRPT S +++ Q +GR +R++P GK +ILD Sbjct: 301 GELMVLTSCNVISIGFDEPSVEVGLMLRPTMSSAMHFQQLGRVMRISPQTGKEYGIILDQ 360 Query: 357 AGNPHDLYAP--------EVGTPKGKSDNVPVQVFCPACGFA 390 AGN L P P CPACG Sbjct: 361 AGNLQRLGFPEDIESYSLPTRAASSGGGGAPPTKPCPACGRI 402 >UniRef50_A0YZ56 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YZ56_9CYAN Length = 723 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 109/520 (20%), Positives = 177/520 (34%), Gaps = 75/520 (14%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVK 59 LRPYQQ D N + ++ PTG+GK+ + R RVL+L H + Sbjct: 28 IILRPYQQTIKDEVYNQLNQGIHRILVYSPTGSGKTATFCSMIADFLASRHRVLLLMHRE 87 Query: 60 ELVAQNHAKYQALGLE---ADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGEFSLLIV 116 L+ Q + G+ I AG + +QS++R ++I Sbjct: 88 FLIEQTVKTLRRFGVPTEAIGIIKAGYSE-NRDRPLQLAGIQSLSRR--QHPQNIDIVIG 144 Query: 117 DECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKA 176 DE H I S+Y+++L L + +G TA+P+RL Y Sbjct: 145 DEAHTICW--YSEYKKLLNSLN----NSIQIGFTASPWRLKPHKQY-----------FGE 187 Query: 177 LFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQR 236 F + ++ ++ G+L D ++L S G F + ++ Sbjct: 188 WFDTIVKGPTIQELMSLGFLARVRYFG-KGGLVDLTQLDTDSTGDFKTLQMEQK-FLDAG 245 Query: 237 ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA--ALITGDTPGAERDVLIE 294 I + +I+E R +IF + V+ +K+ LL I TP ER + + Sbjct: 246 ICEAVRQRILELCLCR-TGVIFNSGVKQSKQQTELLNEAGIFTKHIDAHTPINERRRMFQ 304 Query: 295 NFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLIL 354 + R + +V LT GFD + + + R T+S +LY Q+ GRGLR PGK +CL+L Sbjct: 305 ELEKGEIRCISSVGCLTEGFDCQSIGYVVLARATQSQALYYQVAGRGLRTCPGKENCLLL 364 Query: 355 DYAGNPHDLY----APEVGTPKGKSDNVPVQ-VFCPACGFANTFWGKTTADGTLIEHFGR 409 D+ GN +P + NV CP CG + Sbjct: 365 DFGGNVKRFGFLTKSPSITLEPTPPPNVKEMLKTCPDCGSEVWIFE-------------- 410 Query: 410 RCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLK 469 + CP+C E + E + +M Sbjct: 411 ----------------------QVCPECGYEFTVKKSETDEFEAAF---GEMFDPETLQF 445 Query: 470 DALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERFR 509 + + W E Sbjct: 446 VKYARSQRKARYTKKQNPEQLWATFKSKFPGQLLFGEWIY 485 >UniRef50_B9CN59 DNA/RNA helicase n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN59_9ACTN Length = 865 Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 98/339 (28%), Positives = 151/339 (44%), Gaps = 33/339 (9%) Query: 3 FTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA---RGRVLVLAHVK 59 LRPYQ EAV++ + ++ + TG GK++ AE+ + GR L+LAH Sbjct: 1 MELRPYQVEAVESVFREWESGNRRTLLSMATGCGKTICFAEIVKRVAATGGRSLILAHRG 60 Query: 60 ELVAQNHAKYQAL-GLEADIFAAGLKRKESHGKVVFGSVQSVAR--NLDAF-QGEFSLLI 115 EL+ Q K Q GLE+ + A S +V GSVQ++ R L+AF F +I Sbjct: 61 ELLEQAADKIQRTSGLESALEKAESTSLNSWARVTVGSVQTLMRQDRLNAFAPNRFDAII 120 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 VDE H + Y +IL H R+LG+TAT R K + Sbjct: 121 VDEAHHTLAEG---YIRILDHF----KGARVLGVTATADRADKKDL-------------G 160 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 ++ +E + IK GYL P E +P+ + D S + ++G + L L + Sbjct: 161 EVYDSIAFEYGIAQAIKDGYLCPIEAEMVPL-ELDVSSVSV-THGDYQAGQLGDAL---E 215 Query: 236 RITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEN 295 I ++ R+ ++F V AK L + D +R+ ++ + Sbjct: 216 PYLDAIADAMVTRCQDRR-TVVFLPLVRTAKAFAEKLNERGLIVCEVDGQSEDREEILSD 274 Query: 296 FKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY 334 F +++ L N +LT G+D P VD I LRPT+S LY Sbjct: 275 FNRGKYQVLCNSMLLTEGWDCPSVDCIVCLRPTKSRGLY 313 >UniRef50_B0QS40 Type III restriction enzyme, res subunit n=1 Tax=Haemophilus parasuis 29755 RepID=B0QS40_HAEPR Length = 1121 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 95/496 (19%), Positives = 161/496 (32%), Gaps = 97/496 (19%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLA 56 LRPYQ++A+ A + K ++ + TG GK+ I L R+L L Sbjct: 401 FLGLRPYQEKAIQAVEQNLSEGKREMLLAMATGTGKTRTITGLIHRFLKTDRFRRILFLV 460 Query: 57 HVKELVAQNHAKYQALGLEADIFAAGLKRK------ESHGKVVFGSVQSVARNL-----D 105 L Q + + +E + L E KV +VQS+ + + Sbjct: 461 DRTALAEQAEDTFGGMNVEPNQTLNTLYNFAVNGVVEPETKVKVATVQSLVKQIFYSGEA 520 Query: 106 AFQGEFSLLIVDECHRIG----------------DDEESQYQQILTHLTKVNPHLRLLGL 149 +F +IVDE HR + S Y+++L + V +GL Sbjct: 521 PAIDQFDCIIVDEAHRGYTLDQEMTDGELEFQDNEQYLSTYRRVLDYFDAVK-----IGL 575 Query: 150 TATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQY 209 TATP K +F + ++ + + YL E + Sbjct: 576 TATP-----------------ALHTKEIFGEPVFVYSYKEAVIDDYLVDHEPPIEIKTKL 618 Query: 210 DFSRLQAQSNG---------------------LFSEADLNRELKKQQRITPHIISQIMEF 248 + + + F NR + + ++++ Sbjct: 619 NQDGIHFERGEQLEFIDTSTGEVVLSELADEQNFDVESFNRTVLNDS-FNQVVCEVLLDY 677 Query: 249 AA--TRKGVMIFAATVEHAKEIV------------GLLPAEDAALITGDTPGAERDVLIE 294 + +IF AT HA +I A ITG + LI+ Sbjct: 678 LDPFGSEKTLIFCATDLHADKIKGILDTLFKQKYGDEYNTNSVAKITGQADKP--NTLIK 735 Query: 295 NFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKTDC 351 FK +R+ + V +L+TG D P + + LR +S LY+Q+ GR R GK+ Sbjct: 736 YFKNERYPNIAITVDLLSTGIDVPEICNLVFLRRVKSRVLYEQMKGRATRKCEALGKSVF 795 Query: 352 LILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC 411 I D G + + + P K+ + P+ T EH Sbjct: 796 HIYDAVGLCRAMASVDTMKPIVKNVHQPISQLVEELQAVGKIENNTNPLAN--EHQQALL 853 Query: 412 QGWFEDDDGHREQCDF 427 + + + D Sbjct: 854 EQISQKIMRLLRKADK 869 >UniRef50_UPI000196AC3A hypothetical protein CATMIT_00264 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AC3A Length = 1116 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 105/529 (19%), Positives = 180/529 (34%), Gaps = 78/529 (14%) Query: 2 IFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLA-----RGRVLVLA 56 T R YQ+EA+ T F + A++V+ TG+GK+ V L + +L LA Sbjct: 351 AITNRYYQKEAIVRTCEDFEKGSRKALLVMATGSGKTRVAISLVDVLTKADWAKNILFLA 410 Query: 57 HVKELVAQNHAKYQALGLEADIFAA-GLKRKESHGKVVFGSVQSVARNLDAF-------- 107 LV Q + L K +++F + ++ +D Sbjct: 411 DRTALVNQAKKNFVNLLPSLTTCNLCENKEDPEVSRMIFSTYPTMMNAIDETRSKDGNRL 470 Query: 108 --QGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFH 165 G F L+I+DE HR ++Y+ I + + L+GLTATP Y Sbjct: 471 FTPGHFDLIILDESHR---SVYNKYKDIFDYFDAL-----LIGLTATPKDSIGANTYSIF 522 Query: 166 YHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMP-------VVQYDFSRLQAQ- 217 Y +K YL + + D S + + Sbjct: 523 DLET---------GVPTYAYEYETAVKDKYLVSYHSYETKMKFLEEGIYYDDLSEEEKKE 573 Query: 218 ------SNGLFSEADLNRELKKQQRITPHIISQIMEFA------ATRKGVMIFAATVEHA 265 + +D+N+ + I +I +ME +IFAA HA Sbjct: 574 FEEHFPDEDKITSSDMNKFVFNINTI-DTVIRDLMEHGIKIEGGDKIGKSIIFAANQNHA 632 Query: 266 KEIVGLL-------PAEDAALITGDTPGAERDVLIENFKAQR--FRYLVNVAVLTTGFDA 316 +I + A +IT +T + I+ F + ++V +L TG D Sbjct: 633 NKIKERFDILYPEYKGKIAEVITFNTKFVQ--NAIDRFSKTDSYPQIAISVDMLDTGIDV 690 Query: 317 PHVDLIAILRPTESVSLYQQIVGRGLRLAP-------GKTDCLILDYAGNPHDLYAPEVG 369 P + + + S + + Q++GRG RL K LI DY GN + Sbjct: 691 PDIVNLVFFKKVRSKAKFWQMIGRGTRLRKDLFGPGDDKKGFLIFDYLGNMDYFRVDQRP 750 Query: 370 TPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRC------QGWFEDDDGHRE 423 G +++ +++ + + E + QG ED + Sbjct: 751 EKSGIIESLSQRIYKLRVDILYALEQNASNQDYVDEINKQIKEMSGYIQGLNEDSFNVKL 810 Query: 424 QCDFRFRFKNCPQCNAENDIAARRCRECDTVLVDPDDMLKAALRLKDAL 472 + ++KN N N++ ++ + LV D K A L Sbjct: 811 HLKYVHQYKNPDNWNNLNEMDTHYIKDELSSLVVIHDEDKRAKFFDRQL 859 >UniRef50_C4XDR7 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XDR7_MYCFE Length = 808 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 83/453 (18%), Positives = 169/453 (37%), Gaps = 70/453 (15%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARL-----ARGRVLVLAHVK 59 R YQ+ A++ T++ + K ++V+ TG GK+ V ++ + ++L LA Sbjct: 178 PRYYQKRAINDTVDAVAKGKDRILLVMATGTGKTYVAFQIIWRLWKSGLKKKILYLADRN 237 Query: 60 ELVAQN-HAKYQALGLEADIFAAGLKRKESHGKVVFGSVQ---------SVARNLDAFQG 109 L+ Q ++ + + + ++ ++ Q S+ + ++F+ Sbjct: 238 ILIDQTIIGDFKPF--KNSMVKVSKRNMDTSYEIYLSLYQQLSENGSEDSLKKLKESFKP 295 Query: 110 E-FSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHG 168 + F L+IVDECHR E+S++++IL + +GLTATP + + Sbjct: 296 DFFDLIIVDECHRGSASEDSKWREILNYFDSATK----IGLTATPKETAEVSNIDY---- 347 Query: 169 MVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLD----MPVVQYDFSRLQAQSNG---- 220 F + IY L+ I+ GYL P + + V Y + + G Sbjct: 348 ---------FGEPIYTYSLKEGIEDGYLAPYKVVKFGINTDVFGYRPEKDKRDKYGEIVE 398 Query: 221 --LFSEADLNRELKKQQR---ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAE 275 ++ D ++ + ++R + I + ++F +EHA+ + L Sbjct: 399 DNEYNVKDFDKTIVIEERTKEVAKKITDYLKSINNRYAKTIVFCDDIEHAERMRQALVHY 458 Query: 276 DAALITGDT--------PGAERDVLIENFKAQR---FRYLVNVAVLTTGFDAPHVDLIAI 324 ++ ++ D E ++NF + ++TTG + +IA+ Sbjct: 459 NSDMMAKDHRYIVRITGDNEEGKKQLDNFIDDNELYPTIVTTSELMTTGVNCKLCRVIAL 518 Query: 325 LRPTES--VSLYQQIVGRGLR---------LAPGKTDCLILDYAGNPHDLYAPEVGTPKG 373 ++ ++QI+GRG R K ILD+ P+ P Sbjct: 519 DNTFGENGMTKFKQIIGRGTRIKEFDDPKDKHKNKLYFTILDFKNATKLFADPDFNGPAI 578 Query: 374 KSDNVPVQVFCPACGFANTFWGKTTADGTLIEH 406 + + ++ T D L+ Sbjct: 579 QEEFFNPEILRNKKAKQETKKEYELVDEGLVWK 611 >UniRef50_C4W845 Type III restriction protein res subunit n=1 Tax=Staphylococcus warneri L37603 RepID=C4W845_STAWA Length = 548 Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 136/337 (40%), Gaps = 38/337 (11%) Query: 53 LVLAHVKELVAQNHAKYQALGL---EADIFAAGLKRKESHGKVVFGSVQSVARN---LDA 106 + + H + ++ + +++ + E + K K+ + + +F ++Q+++ N + Sbjct: 1 MFIVHNEGILNRAKEEFRKVMPHIDEKEFGLLTGKHKDINARYLFATIQTLSNNENFKEF 60 Query: 107 FQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHY 166 + F ++ DE HR + YQ++ + T +LG+TATP R I++ Sbjct: 61 AKDHFDYIVFDEAHR---SAAASYQKVFNYFTPKF----MLGMTATPERTDDLNIFELFD 113 Query: 167 HGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEAD 226 + + +E+ L+ ++ L P + NG +E Sbjct: 114 Y------------NVAFEIRLQEALESEILCPFHYFGVTDYSL---------NGEINEDV 152 Query: 227 LNRELKKQQRITPHIISQIMEFAATRK--GVMIFAATVEHAKEIVGLLPAEDAALI--TG 282 + + +I+ + + + + +IF + + A E+ L + TG Sbjct: 153 TDLKNLTSDERLKNILEKTDYYGYSGEELKGLIFVSRRDEAYELAEKLTNCGIPSVGLTG 212 Query: 283 DTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGL 342 R I+ K Y++ V + G D P V+ + +LRPTES ++ Q +GRGL Sbjct: 213 KDNINVRSTTIDRLKNGEINYIITVDLFNEGIDIPEVNQVVMLRPTESSIIFIQQLGRGL 272 Query: 343 RLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVP 379 R + K ++D+ GN Y V +S N Sbjct: 273 RKSDNKDYVTVIDFIGNYKTNYLIPVALSGDQSQNKD 309 >UniRef50_C7QWT4 Type III restriction protein res subunit n=1 Tax=Cyanothece sp. PCC 8802 RepID=C7QWT4_CYAP0 Length = 1005 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 86/444 (19%), Positives = 157/444 (35%), Gaps = 69/444 (15%) Query: 6 RPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLVLAHVKE 60 R YQQEA+ + F +IV+ TG GK+ I L L VL +A Sbjct: 151 RTYQQEAIQRVIERFEDGFRRGLIVMATGTGKTRTIMGLIDLLIRSNHLRTVLFVADRDV 210 Query: 61 LVAQNHAK-YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAF-QGEFSLLIVDE 118 LV Q ++ + + ++ G++Q++ + F G F L+I DE Sbjct: 211 LVRQALDDNFRVYLPDEPSDRIRSYNIDYSKRLYVGTLQTLTKCCRNFTPGFFDLIIFDE 270 Query: 119 CHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEKALF 178 CHR +Q++++L + ++LGLTATP +Q + Sbjct: 271 CHR---SIYNQFREVLDYFDG-----KILGLTATPATAIDRNTFQAFHC---------FE 313 Query: 179 RDCIYELPLRYMIKHGYLTPP---------ERLDMPVVQYDFSRLQAQ-------SNGLF 222 + + I G L +R + D + + Sbjct: 314 GIPTFLYEYQQAINDGNLVDYSLYQAQTHFQREGIRGANLDEEDRNMLIEQGIDPDDIDY 373 Query: 223 SEADLNRELKKQQRITPHIISQIMEFAATR------KGVMIFAATVEHAKEIVGLLPAED 276 +L +++ + + ++IME +IFA T +HA + + Sbjct: 374 EGTELEKKVSNRDTLRKQ-WTEIMEVCHKDESGQLPGKTIIFAVTQKHAHRLKEVFDEMY 432 Query: 277 ------AALITGDTPGAERDVLIENFKAQR-FRYLVNVAVLTTGFDAPHVDLIAILRPTE 329 +I + LI+ FK + R ++V ++ TG D P V + ++P + Sbjct: 433 PQFSEMVQVIVSEMEKT--KDLIDKFKKEEMPRIAISVDLMDTGVDIPEVVNLVFMKPVQ 490 Query: 330 SVSLYQQIVGRGLRLAP-----------GKTDCLILDYAGNPHDLYAPEVGTPKGKSDNV 378 S QQ++GRG R K + LI+D+ N + ++ + Sbjct: 491 SFIKLQQMIGRGTRNHEACKYLNRLPNGKKDEFLIIDFWEN--EFDRDPSDEVISQNLPI 548 Query: 379 PVQVFCPACGFANTFWGKTTADGT 402 V++F + + Sbjct: 549 TVKLFNTRLRLLGYYLDNQESSDE 572 >UniRef50_B6R0S4 Type III restriction enzyme, res subunit family n=5 Tax=Alphaproteobacteria RepID=B6R0S4_9RHOB Length = 1131 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 98/488 (20%), Positives = 163/488 (33%), Gaps = 95/488 (19%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLV-IAELARLAR----GRVLVLAHV 58 +LRPYQ+EA+DA K ++ + TG GK+ IA + RL + R+L L Sbjct: 420 SLRPYQEEAIDAVEKEIAGGKRSVLVAMATGTGKTRTCIALMYRLLKTKRFKRILFLVDR 479 Query: 59 KELVAQNHAK--------YQALGLEADIFAAGLKRKESHGKVVFGSVQSVARNLDAFQGE 110 L Q + ++ K + ++ +VQS+ ++ + Sbjct: 480 TALGDQTTDALNTTEFEGFYKFSQIYNVAGLDQKLPDDATQIHVATVQSLVARINNTEDP 539 Query: 111 --------FSLLIVDECHRIGDDEE----------------SQYQQILTHLTKVNPHLRL 146 + +++DE HR + S Y+ +L++ V Sbjct: 540 KERLTPGMYDCIVIDEAHRGYTLDADLKEGEENYRDVSAYESAYRNVLSYFDAVK----- 594 Query: 147 LGLTATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTP-------- 198 +GLTATP Q Y R + G+L Sbjct: 595 IGLTATP----ALHTLQIFDCE-----------KPSYSYGYRQAVVEGFLIDHLPPKRIT 639 Query: 199 ---------------PERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIIS 243 E +D + L + + A NR + + + Sbjct: 640 TALAEAGITFNGGEDVEIVDRHTGEVTLHNLPDEVELEYDLAKFNRRVY-SENFNRIVCQ 698 Query: 244 QIMEFAATR--KGVMIFAATVEHAKEIVGLLPA---------EDAALITGDTPGAERDVL 292 I A +IFAAT HA +IV LL + ++ + L Sbjct: 699 TIANEIAPDAPGKTLIFAATDTHADDIVRLLKEELREEYGDLHNDMVMKITGSVRDAKGL 758 Query: 293 IENFKAQRF-RYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAP--GKT 349 I+ F+ +Y+V V +LTTG D P + + +R +S LY Q++GR RL P GK Sbjct: 759 IKKFRNDPLPKYVVTVDLLTTGVDIPVLANLVFVRRVKSRILYDQMIGRATRLCPEIGKQ 818 Query: 350 DCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGR 409 + I D +L P N+P+ A + G ++ Sbjct: 819 NFRIFDAVDLYAELQQMSDMRPVVVKPNMPLVELIADLDRAPNAEEENWVAGQVVVKMRA 878 Query: 410 RCQGWFED 417 + E Sbjct: 879 LAKRMDEA 886 >UniRef50_C4V188 Putative uncharacterized protein n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V188_9FIRM Length = 760 Score = 281 bits (718), Expect = 7e-74, Method: Composition-based stats. Identities = 89/435 (20%), Positives = 163/435 (37%), Gaps = 60/435 (13%) Query: 5 LRPYQQEAVDATLNHFRRHKT-PAVIVLPTGAGKSLVIAEL----ARLARGRVLVLAHVK 59 +Q +A+ A + + ++VLPTG GK+ + A + ++L LAH + Sbjct: 25 PYRHQLDALCALDRMDEENASYSTLVVLPTGGGKTYTASTWLLRHALDKKKKILWLAHRQ 84 Query: 60 ELVAQNHAKYQALGLEADI---------FAAGLKRKE------SHGKVVFGSVQSVAR-- 102 L+ Q +Q A+I +G + ++ S S+ R Sbjct: 85 MLLDQAAESFQKFAYTAEIPHISSFRYRIVSGSSNHDKTINIDPKDDLLIISKDSIGRAS 144 Query: 103 NLDAFQGEFS-----LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLG 157 NL + LIVDE H Y++++ ++ H++L+GLTATPFR Sbjct: 145 NLARLAPWLAGENEIFLIVDEAHH---STAKTYRRVIDYVKDKVEHVKLIGLTATPFRTA 201 Query: 158 KGW---IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQ-----Y 209 + + + + G+ G K Y++ L+ +I L+ P + Sbjct: 202 ENEQGLLARIYKDGVSGGRSKKNDIGIAYKVDLKELINRQILSHPHFETYYTDEEYGKDL 261 Query: 210 DFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIV 269 L++ + +L++ + + I+ ++ A ++FA ++HA + Sbjct: 262 GLEALESIQHLDTLSPELSQSIAESGPRNKLIVDTYLKKADEYGKTIVFAVNIDHAIALA 321 Query: 270 GLLPAEDAALIT-----------GDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPH 318 L E D +E F++ LVNV +LT G D P Sbjct: 322 KLFNKAGIKAEYVVSAIKDMGTGATISPKENDSKLEAFRSGDVEVLVNVNILTEGVDLPM 381 Query: 319 VDLIAILRPTESVSLYQQIVGRGLR--LAPGKTDCLILDYAGNPHDL---------YAPE 367 + + RPT S L Q++GR LR A G + I+ + + ++ + + Sbjct: 382 TKTVFLARPTVSTILMTQMIGRALRGEKAGGTSMAYIVSFVDDWNEHIAWVSPDTIFVGD 441 Query: 368 VGTPKGKSDNVPVQV 382 P S Q Sbjct: 442 SEWPPKDSPEYRKQQ 456 >UniRef50_B5Y627 Type I restriction-modification system, R subunit n=2 Tax=Clostridia RepID=B5Y627_COPPD Length = 748 Score = 281 bits (718), Expect = 8e-74, Method: Composition-based stats. Identities = 100/498 (20%), Positives = 166/498 (33%), Gaps = 71/498 (14%) Query: 5 LRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG-----RVLVLAHVK 59 LR YQ+ AV ++ F+ + I + TG GK++ A + RVL L Sbjct: 140 LRNYQKIAVSQVVSAFQLGRDRTYIEMATGTGKTITAAGIISKLYKVGLVRRVLFLVDRD 199 Query: 60 ELVAQNHAKYQALGLEA-DIFAAGLKRKESHGKVVFGSVQSVA---RNLDAFQGEFSLLI 115 L Q + + + I +++ + + ++Q + + F L+I Sbjct: 200 SLAEQTVRSFNKVLGDTFKINRLTGTKEDKYNDISVSTIQFLYVNDKYRAYPNNFFDLVI 259 Query: 116 VDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGDEK 175 +DECHR + ++ H ++LGLTATP Sbjct: 260 LDECHR---SYFGDWHTVIEHFR--TGKAKVLGLTATP-------------SDKETQSTD 301 Query: 176 ALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQ 235 F + ++ +K G L ER + D S + F DL R + Sbjct: 302 DYFGEPVFRYSYYQGVKDGILAFTERYKF-LTNVDLSGIH-DMGFDFEPEDLGRRVDVP- 358 Query: 236 RITPHIISQIMEFAA-----TRKGVMIFAATVEHAKEIVGLL----------------PA 274 R I + E T ++FAA++ HA + L Sbjct: 359 RRNELIAEKYFEVIGYEQTHTIPKTLVFAASIAHANHLRDALITKYNELNKLPKDSSEAE 418 Query: 275 EDAALITGDTPGAERDVLIENFK--AQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVS 332 + +I A LI F+ R V+V +L+TG DAP ++++ + RPT+S Sbjct: 419 DFIVVIHNQVRNA--SELIRKFQEIDSEIRIAVSVDMLSTGIDAPDIEVLVMARPTKSKI 476 Query: 333 LYQQIVGRGLRLA------PGKTDCLILDYAG--------NPHDLYAPEVGTPKGKSDNV 378 LY Q+ GR R K ++D+ L E+ +++ Sbjct: 477 LYVQMKGRATRKCNEQEHGKTKESFKLIDFVDLAGIEEVVTDETLETDEIIDTTEETEVS 536 Query: 379 PVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCN 438 P GK + IE W + R + PQ Sbjct: 537 SDGEKIP--SDKEDGEGKEPKETEKIEMVIADVPVWIVKSEVITSSAFDHIRKQIEPQLK 594 Query: 439 AENDIAARRCRECDTVLV 456 A + + R VL Sbjct: 595 AIKEKTVLKERFVQAVLS 612 >UniRef50_A4SC93 Type III restriction enzyme, res subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SC93_PROVI Length = 556 Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats. Identities = 100/413 (24%), Positives = 176/413 (42%), Gaps = 39/413 (9%) Query: 4 TLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARGR-----VLVLAHV 58 LR YQ AV+A + A+ ++ TG GKS+V ++ R VLVLAH+ Sbjct: 138 ELRNYQVSAVEAVEGARAHGQRKALAIMATGLGKSMVANQVIANELDRNPCQEVLVLAHM 197 Query: 59 KELVAQN-HAKYQALG-LEADIFAAGLKRKESHGKVVFGSVQSVARNLDA----FQGEFS 112 +LV Q + +Q LG + ++ G VVF + QS+ + + F Sbjct: 198 SDLVRQLEASSWQQLGKGTSTHLWTDGEQPAYSGGVVFATWQSLFSAMRKDAGSLRERFG 257 Query: 113 LLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRG 172 L++VDE H + ++L HL+ GLTATP+R + + Sbjct: 258 LVVVDEAHHAPSVG---FTELLEHLSPNFLA----GLTATPWRGDERSL----------- 299 Query: 173 DEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELK 232 + LF + ++ L + ++ G+L + M ++ + S+ + ADLN L Sbjct: 300 --QGLFGEPVFTLDIVAGMQMGFLAAVDY-RMLTDGINWEEVSRASSQGLTVADLNSHLV 356 Query: 233 KQQR---ITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAEDA--ALITGDTPGA 287 +R + I ++ + F ++EHA+ + L + AL+ P Sbjct: 357 VPERDIGMVEVICDKM--AGIKNPRALAFCRSIEHAERLQPLFASRGVKTALLHSQLPRE 414 Query: 288 ERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPG 347 +R + F+ L+++ +L G D P V+L+A +R T S ++ Q +GRGLR++ G Sbjct: 415 QRFKNLSGFRMGHIDLLISIEMLNEGIDIPEVNLVAFMRVTHSRRIFLQQLGRGLRISKG 474 Query: 348 KTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD 400 K + L+LD+ + + A K + ++V G F Sbjct: 475 KENVLVLDFVADIRRIAAGLEINRLAKERSAGMEVVRYRDGQIVKFDNDAPLR 527 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.146 0.420 Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,291,716,394 Number of Sequences: 3077464 Number of extensions: 143651752 Number of successful extensions: 721747 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 7429 Number of HSP's successfully gapped in prelim test: 10590 Number of HSP's that attempted gapping in prelim test: 661543 Number of HSP's gapped (non-prelim): 38174 length of query: 586 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 452 effective length of database: 628,016,180 effective search space: 283863313360 effective search space used: 283863313360 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 96 (41.5 bits)