| Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
| Sequence |   |
M | H | I | L | D | S | L | L | A | F | S | A | Y | F | F | I | G | V | A | M | V | I | I | F | L | F | I | Y | S | K | I | T | P | H | N | E | W | Q | L | I | K | N | N | N | T | A | A | S | L | A | F | S | G | T | L | L | G | Y | V | I |
| Secondary structure |   |
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| Disorder |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
| Sequence |   |
P | L | S | S | A | A | I | N | A | V | S | I | P | D | Y | F | A | W | G | G | I | A | L | V | I | Q | L | L | V | F | A | G | V | R | L | Y | M | P | A | L | S | E | K | I | I | N | H | N | T | A | A | G | M | F | M | G | T | A | A | L |
| Secondary structure |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . |
| Sequence |   |
A | G | G | I | F | N | A | A | C | M | T | W |
| Secondary structure |   |
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| Confidence Key |
| High(9) |   |
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Low (0) |
| ? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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| 1 |
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PDB 3qnq chain D
Region: 6 - 44 Aligned: 39 Modelled: 39 Confidence: 7.2% Identity: 18% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
Phyre2
|
| Detailed template information |   |
| Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
| Transmembrane helix prediction |   |
Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
| If you use the binding site
predictions from 3DLigandSite, please also cite: |
| 3DLigandSite: predicting ligand-binding sites using similar structures. |
| Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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