BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (315 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8XAZ4 Uncharacterized protein yneF n=65 Tax=Enterobact... 644 0.0 UniRef50_A8A075 Diguanylate cyclase (GGDEF) domain protein n=2 T... 570 e-161 UniRef50_D2TIF8 Putative signal transduction protein n=2 Tax=Ent... 518 e-145 UniRef50_C8QCH2 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b Re... 249 7e-65 UniRef50_D0FTB2 Conserved uncharacterized protein YneF n=3 Tax=E... 216 6e-55 UniRef50_C6CDM3 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech... 196 7e-49 UniRef50_B1JAS6 Diguanylate cyclase n=5 Tax=Pseudomonas RepID=B1... 195 1e-48 UniRef50_C6CM30 Diguanylate cyclase n=1 Tax=Dickeya zeae Ech1591... 192 2e-47 UniRef50_D2C311 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech... 188 2e-46 UniRef50_A8GAZ5 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GAZ... 176 1e-42 UniRef50_A0P392 GGDEF domain protein n=1 Tax=Labrenzia aggregata... 169 1e-40 UniRef50_D0IXN6 Diguanylate cyclase n=2 Tax=Comamonas testostero... 155 2e-36 UniRef50_B7GZC2 Uncharacterized protein yneF n=10 Tax=Acinetobac... 151 3e-35 UniRef50_A8GES9 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GES... 150 4e-35 UniRef50_C3JIZ7 Diguanylate cyclase n=2 Tax=Rhodococcus erythrop... 138 3e-31 UniRef50_C6RK39 Diguanylate cyclase n=2 Tax=Acinetobacter radior... 132 1e-29 UniRef50_C3JRE9 Diguanylate cyclase n=2 Tax=Rhodococcus erythrop... 129 1e-28 UniRef50_C6DKF8 Diguanylate cyclase n=5 Tax=Pectobacterium RepID... 129 1e-28 UniRef50_Q7CZM8 GGDEF family protein n=1 Tax=Agrobacterium tumef... 128 3e-28 UniRef50_A9C2H0 Diguanylate cyclase n=2 Tax=cellular organisms R... 127 4e-28 UniRef50_D0S942 Response regulator n=2 Tax=Acinetobacter RepID=D... 125 1e-27 UniRef50_B1YEE7 Diguanylate cyclase n=1 Tax=Exiguobacterium sibi... 123 7e-27 UniRef50_Q2RNW0 Putative diguanylate cyclase (GGDEF domain) n=1 ... 123 9e-27 UniRef50_Q310L5 Diguanylate cyclase (GGDEF domain) n=2 Tax=Desul... 119 1e-25 UniRef50_B7RWX6 GGDEF domain protein n=1 Tax=marine gamma proteo... 119 2e-25 UniRef50_Q3AFS2 GGDEF domain protein n=1 Tax=Carboxydothermus hy... 117 4e-25 UniRef50_C6BU46 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 117 7e-25 UniRef50_A5V9Q8 Diguanylate cyclase n=1 Tax=Sphingomonas wittich... 116 9e-25 UniRef50_Q73IE7 Response regulator/GGDEF domain protein n=20 Tax... 116 1e-24 UniRef50_C4LFT4 Diguanylate cyclase n=1 Tax=Tolumonas auensis DS... 116 1e-24 UniRef50_B5YJX2 Diguanylate cyclase n=1 Tax=Thermodesulfovibrio ... 115 2e-24 UniRef50_Q3IKV1 Putative uncharacterized protein n=2 Tax=Alterom... 115 2e-24 UniRef50_Q486E7 Sensory box/GGDEF domain protein n=2 Tax=Proteob... 115 3e-24 UniRef50_Q15NS8 Diguanylate cyclase/phosphodiesterase with PAS/P... 115 3e-24 UniRef50_C8W1N2 Diguanylate cyclase n=1 Tax=Desulfotomaculum ace... 114 4e-24 UniRef50_C8X007 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 114 5e-24 UniRef50_Q65IC8 GGDEF-domain containing protein n=1 Tax=Bacillus... 114 5e-24 UniRef50_D1U9C4 Diguanylate cyclase n=1 Tax=Desulfovibrio aespoe... 114 5e-24 UniRef50_A8H0B9 Diguanylate cyclase and serine/threonine protein... 114 6e-24 UniRef50_Q47C76 PAS:GGDEF n=1 Tax=Dechloromonas aromatica RCB Re... 114 7e-24 UniRef50_Q0A9X2 Diguanylate cyclase n=3 Tax=Proteobacteria RepID... 113 7e-24 UniRef50_A4JKJ0 Diguanylate cyclase n=2 Tax=Burkholderia RepID=A... 113 8e-24 UniRef50_Q4KDW8 GGDEF domain protein n=6 Tax=Pseudomonas RepID=Q... 113 9e-24 UniRef50_C4KYJ1 Diguanylate cyclase n=1 Tax=Exiguobacterium sp. ... 113 9e-24 UniRef50_Q314F9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Desul... 113 9e-24 UniRef50_A3WKT4 GGDEF domain protein n=2 Tax=Alteromonadales Rep... 113 1e-23 UniRef50_A5P728 GGDEF domain protein n=1 Tax=Erythrobacter sp. S... 112 1e-23 UniRef50_C7LC06 GGDEF domain protein n=28 Tax=Brucella RepID=C7L... 112 1e-23 UniRef50_B3R1Q4 Putative di-guanylate cyclase, GGDEF domain; tra... 112 1e-23 UniRef50_A1ASG6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 112 2e-23 UniRef50_B5ZNS2 Diguanylate cyclase n=10 Tax=Rhizobiales RepID=B... 112 2e-23 UniRef50_Q3SFG4 Putative diguanylate cyclase (GGDEF domain) n=1 ... 112 2e-23 UniRef50_Q21ED1 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 111 3e-23 UniRef50_A6W0K6 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL... 111 4e-23 UniRef50_A4JR79 Diguanylate cyclase with PAS/PAC sensor n=4 Tax=... 110 5e-23 UniRef50_Q1LBF9 Diguanylate cyclase n=1 Tax=Cupriavidus metallid... 110 5e-23 UniRef50_Q1N653 Putative uncharacterized protein n=1 Tax=Bermane... 110 5e-23 UniRef50_A4BIU7 Response regulator containing a CheY-like receiv... 110 5e-23 UniRef50_C6DJJ8 Diguanylate cyclase n=1 Tax=Pectobacterium carot... 110 6e-23 UniRef50_A6X0V6 Diguanylate cyclase n=3 Tax=Brucellaceae RepID=A... 110 6e-23 UniRef50_UPI0001787F83 diguanylate cyclase with PAS/PAC sensor n... 110 6e-23 UniRef50_B6BJC6 GGDEF domain/pas/pac sensor domain protein n=1 T... 110 7e-23 UniRef50_A4BG19 GGDEF domain protein n=1 Tax=Reinekea blandensis... 110 8e-23 UniRef50_Q0K903 GGDEF domain protein n=3 Tax=Cupriavidus RepID=Q... 110 8e-23 UniRef50_B5ZQ84 Diguanylate cyclase n=5 Tax=Rhizobium RepID=B5ZQ... 110 9e-23 UniRef50_A4SQK1 GGDEF domain protein n=2 Tax=Aeromonas RepID=A4S... 109 1e-22 UniRef50_A6F836 Putative uncharacterized protein n=1 Tax=Moritel... 109 1e-22 UniRef50_C7R6Y0 Diguanylate cyclase n=1 Tax=Kangiella koreensis ... 109 1e-22 UniRef50_A1T013 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 109 1e-22 UniRef50_C0QSJ8 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pe... 109 1e-22 UniRef50_D2R798 Diguanylate cyclase n=1 Tax=Pirellula staleyi DS... 109 1e-22 UniRef50_B9JVD4 GGDEF family protein n=1 Tax=Agrobacterium vitis... 109 1e-22 UniRef50_D0LIN2 Diguanylate cyclase n=1 Tax=Haliangium ochraceum... 109 1e-22 UniRef50_Q88RK0 GGDEF domain protein n=3 Tax=Pseudomonas putida ... 109 1e-22 UniRef50_A6UB49 Diguanylate cyclase n=2 Tax=Sinorhizobium RepID=... 109 1e-22 UniRef50_C7LVZ4 Diguanylate cyclase n=1 Tax=Desulfomicrobium bac... 109 1e-22 UniRef50_A6F6I7 Hypothetical GGDEF domain family protein n=1 Tax... 109 1e-22 UniRef50_A6SZ23 Uncharacterized conserved protein n=1 Tax=Janthi... 109 1e-22 UniRef50_Q47X90 GGDEF domain protein n=1 Tax=Colwellia psychrery... 108 2e-22 UniRef50_Q2RRD4 Putative diguanylate cyclase (GGDEF domain) n=1 ... 108 2e-22 UniRef50_B7GHV8 Signal transduction diguanylate cyclase n=1 Tax=... 108 2e-22 UniRef50_Q1MYJ5 Response regulator containing a CheY-like receiv... 108 2e-22 UniRef50_Q1N175 Diguanylate cyclase (GGDEF domain) n=1 Tax=Berma... 108 2e-22 UniRef50_A0LAY9 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC... 108 2e-22 UniRef50_B0TJ24 Periplasmic/7TM domain sensor diguanylate cyclas... 108 2e-22 UniRef50_Q7MRL2 Putative uncharacterized protein n=1 Tax=Wolinel... 108 3e-22 UniRef50_B5JSY0 Response regulator PleD n=1 Tax=gamma proteobact... 108 3e-22 UniRef50_A6VWF8 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL... 108 3e-22 UniRef50_Q47W79 GGDEF domain protein n=1 Tax=Colwellia psychrery... 108 3e-22 UniRef50_Q1K1S4 Diguanylate cyclase n=4 Tax=Bacteria RepID=Q1K1S... 108 3e-22 UniRef50_C4WGI0 Diguanylate cyclase (GGDEF) domain-containing pr... 108 3e-22 UniRef50_B2V685 Diguanylate cyclase/phosphodiesterase n=3 Tax=Su... 108 3e-22 UniRef50_B9L727 Diguanylate cyclase/phosphodiesterase n=1 Tax=Na... 108 4e-22 UniRef50_Q1N3P2 Probable two-component response regulator n=1 Ta... 108 4e-22 UniRef50_Q1D632 GAF domain/GGDEF domain protein n=2 Tax=Cystobac... 107 4e-22 UniRef50_A4XQ87 Diguanylate cyclase n=1 Tax=Pseudomonas mendocin... 107 4e-22 UniRef50_Q1DC46 FHA domain/GGDEF domain protein n=2 Tax=Myxococc... 107 4e-22 UniRef50_C1DD63 Sensor protein n=1 Tax=Laribacter hongkongensis ... 107 4e-22 UniRef50_Q315M6 Diguanylate cyclase n=1 Tax=Desulfovibrio desulf... 107 4e-22 UniRef50_C9YC42 Putative uncharacterized protein n=1 Tax=Curviba... 107 4e-22 UniRef50_Q89SS4 Bll2326 protein n=1 Tax=Bradyrhizobium japonicum... 107 4e-22 UniRef50_Q1LIC9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Cupri... 107 4e-22 UniRef50_Q02P32 Putative two-component response regulator n=6 Ta... 107 4e-22 UniRef50_A9DAY4 Periplasmic sensor diguanylate cyclase n=1 Tax=H... 107 4e-22 UniRef50_B1Z9Z6 Diguanylate cyclase n=6 Tax=Alphaproteobacteria ... 107 5e-22 UniRef50_B2JUD5 Diguanylate cyclase n=4 Tax=Burkholderia RepID=B... 107 5e-22 UniRef50_Q1K433 Ammonium transporter n=1 Tax=Desulfuromonas acet... 107 5e-22 UniRef50_Q1MZ89 Response regulator containing a CheY-like receiv... 107 6e-22 UniRef50_Q5LPK8 GGDEF domain protein n=1 Tax=Ruegeria pomeroyi R... 107 6e-22 UniRef50_Q12S41 GGDEF domain n=1 Tax=Shewanella denitrificans OS... 107 6e-22 UniRef50_Q085X7 Diguanylate cyclase n=2 Tax=Alteromonadales RepI... 107 6e-22 UniRef50_A4BD76 GGDEF domain protein n=1 Tax=Reinekea blandensis... 107 6e-22 UniRef50_A6W1T4 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL... 107 6e-22 UniRef50_A1SVZ1 Diguanylate cyclase n=1 Tax=Psychromonas ingraha... 107 6e-22 UniRef50_A3DHG2 Diguanylate cyclase with GAF sensor n=3 Tax=Clos... 107 6e-22 UniRef50_D0LHJ8 Diguanylate cyclase n=1 Tax=Haliangium ochraceum... 107 7e-22 UniRef50_Q2S9K6 Response regulator containing a CheY-like receiv... 107 7e-22 UniRef50_A9AYQ2 Diguanylate cyclase and serine/threonine protein... 107 7e-22 UniRef50_A6WV43 Diguanylate cyclase n=1 Tax=Ochrobactrum anthrop... 107 7e-22 UniRef50_A1SY47 Diguanylate cyclase n=1 Tax=Psychromonas ingraha... 106 9e-22 UniRef50_A3J836 Putative diguanylate cyclase (GGDEF domain) n=1 ... 106 9e-22 UniRef50_A3Y5H4 Diguanylate cyclase (GGDEF domain) n=1 Tax=Marin... 106 9e-22 UniRef50_A6X7T2 Diguanylate cyclase n=1 Tax=Ochrobactrum anthrop... 106 1e-21 UniRef50_Q2SNU2 Response regulator containing a CheY-like receiv... 106 1e-21 UniRef50_Q2IXE2 Response regulator receiver modulated diguanylat... 106 1e-21 UniRef50_Q07MN8 Diguanylate cyclase n=10 Tax=Bradyrhizobiaceae R... 106 1e-21 UniRef50_A8FU11 Diguanylate cyclase n=9 Tax=Shewanella RepID=A8F... 106 1e-21 UniRef50_A6TMF8 Diguanylate cyclase n=1 Tax=Alkaliphilus metalli... 106 1e-21 UniRef50_A1VA66 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=... 106 1e-21 UniRef50_Q2BLA2 Putative uncharacterized protein n=1 Tax=Neptuni... 106 1e-21 UniRef50_B0TH60 Ggdef domain protein, putative n=1 Tax=Heliobact... 106 1e-21 UniRef50_C8Q7A8 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b Re... 106 1e-21 UniRef50_A8UUF5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydro... 106 1e-21 UniRef50_P54595 Uncharacterized protein yhcK n=2 Tax=Bacillus su... 106 1e-21 UniRef50_A8FZ07 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8F... 106 1e-21 UniRef50_Q3A271 Sensor histidine kinase/FOG: GGDEF domain protei... 105 1e-21 UniRef50_A6CY69 Putative GGDEF family protein n=1 Tax=Vibrio shi... 105 1e-21 UniRef50_C6BW86 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 105 2e-21 UniRef50_UPI000185121C diguanylate cyclase n=1 Tax=Bacillus coah... 105 2e-21 UniRef50_Q2JA03 Diguanylate cyclase (GGDEF domain) n=1 Tax=Frank... 105 2e-21 UniRef50_Q9RRJ2 GGDEF family protein n=1 Tax=Deinococcus radiodu... 105 2e-21 UniRef50_A1RG31 Diguanylate cyclase n=3 Tax=Shewanella RepID=A1R... 105 2e-21 UniRef50_Q7CXW5 GGDEF family protein n=1 Tax=Agrobacterium tumef... 105 2e-21 UniRef50_B5ZEJ8 Diguanylate cyclase n=2 Tax=Gluconacetobacter di... 105 2e-21 UniRef50_B9ZP75 Diguanylate cyclase n=3 Tax=Thioalkalivibrio sp.... 105 2e-21 UniRef50_A8FBD0 ABC superfamily ATP binding cassette transporter... 105 2e-21 UniRef50_C1DCL4 Diguanylate cyclase n=1 Tax=Laribacter hongkonge... 105 2e-21 UniRef50_Q15V65 Diguanylate cyclase n=1 Tax=Pseudoalteromonas at... 105 2e-21 UniRef50_B0UJW4 Diguanylate cyclase n=1 Tax=Methylobacterium sp.... 105 2e-21 UniRef50_A4TZG0 GGDEF n=1 Tax=Magnetospirillum gryphiswaldense R... 105 2e-21 UniRef50_Q6AL41 Putative uncharacterized protein n=1 Tax=Desulfo... 105 2e-21 UniRef50_Q0KEL5 Putative uncharacterized protein h16_A0406 n=2 T... 105 2e-21 UniRef50_A0YPS9 Putative uncharacterized protein n=1 Tax=Lyngbya... 105 2e-21 UniRef50_Q2LS38 Response regulator protein with GGDEF domain n=2... 105 2e-21 UniRef50_B9QWG6 GGDEF domain protein n=1 Tax=Labrenzia alexandri... 105 2e-21 UniRef50_A8MM09 Diguanylate cyclase n=2 Tax=Clostridiaceae RepID... 105 3e-21 UniRef50_B8KAR8 Ggdef family protein n=1 Tax=Vibrio parahaemolyt... 105 3e-21 UniRef50_C7RLV2 Response regulator receiver modulated diguanylat... 105 3e-21 UniRef50_B8DJ36 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 105 3e-21 UniRef50_A1VD57 Diguanylate cyclase n=3 Tax=Desulfovibrio vulgar... 105 3e-21 UniRef50_C6MHA0 Periplasmic/7TM domain sensor diguanylate cyclas... 105 3e-21 UniRef50_Q6ALC0 Putative uncharacterized protein n=1 Tax=Desulfo... 105 3e-21 UniRef50_A4CEZ1 Response regulator/GGDEF domain protein n=2 Tax=... 105 3e-21 UniRef50_Q0AQ22 Diguanylate cyclase n=2 Tax=Hyphomonadaceae RepI... 105 3e-21 UniRef50_B8IFL7 Diguanylate cyclase n=1 Tax=Methylobacterium nod... 104 3e-21 UniRef50_Q0AV70 Response regulator receiver protein n=1 Tax=Synt... 104 3e-21 UniRef50_B6BNA8 Diguanylate cyclase/phosphodiesterase with PAS/P... 104 3e-21 UniRef50_Q2BQS0 GGDEF family protein n=1 Tax=Neptuniibacter caes... 104 3e-21 UniRef50_C4WLB9 Diguanylate cyclase (GGDEF) domain-containing pr... 104 3e-21 UniRef50_C6BZK2 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 104 3e-21 UniRef50_A4VQQ9 GGDEF domain protein n=1 Tax=Pseudomonas stutzer... 104 4e-21 UniRef50_B3PIC1 Sensory box/GGDEF family protein n=5 Tax=Gammapr... 104 4e-21 UniRef50_B8JB86 Diguanylate cyclase n=4 Tax=Anaeromyxobacter Rep... 104 4e-21 UniRef50_Q21JG3 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 104 4e-21 UniRef50_B9M798 Diguanylate cyclase n=1 Tax=Geobacter sp. FRC-32... 104 4e-21 UniRef50_Q47Y21 GGDEF domain protein n=1 Tax=Colwellia psychrery... 104 4e-21 UniRef50_Q1YG68 GGDEF domain protein n=1 Tax=Aurantimonas mangan... 104 4e-21 UniRef50_A0Y2V2 GGDEF family protein n=3 Tax=Alteromonadales Rep... 104 4e-21 UniRef50_A6WMZ7 Diguanylate cyclase n=3 Tax=Shewanella baltica R... 104 4e-21 UniRef50_A4Y784 Diguanylate cyclase n=18 Tax=Shewanella RepID=A4... 104 5e-21 UniRef50_A0KEB8 Tetratricopeptide repeat family n=2 Tax=Aeromona... 104 5e-21 UniRef50_C8VW84 Response regulator receiver modulated diguanylat... 103 5e-21 UniRef50_Q2BML0 Putative diguanylate cyclase (GGDEF domain) n=1 ... 103 6e-21 UniRef50_C0QRX3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pe... 103 6e-21 UniRef50_B8FMG8 Diguanylate cyclase n=1 Tax=Desulfatibacillum al... 103 6e-21 UniRef50_C1M322 Inner membrane protein yeaI n=1 Tax=Citrobacter ... 103 6e-21 UniRef50_A9AXN1 Diguanylate cyclase n=1 Tax=Herpetosiphon aurant... 103 6e-21 UniRef50_C6WY37 Diguanylate cyclase n=1 Tax=Methylotenera mobili... 103 6e-21 UniRef50_C7R8C4 Diguanylate cyclase n=1 Tax=Kangiella koreensis ... 103 6e-21 UniRef50_A0LSI3 Diguanylate cyclase n=1 Tax=Acidothermus cellulo... 103 6e-21 UniRef50_A8FHG3 Possible diguanylate cyclase n=2 Tax=Bacillus pu... 103 6e-21 UniRef50_Q1N6U5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Berma... 103 6e-21 UniRef50_A6VRQ0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 103 7e-21 UniRef50_A6DDS7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Camin... 103 7e-21 UniRef50_C0N773 GGDEF domain protein n=1 Tax=Methylophaga thioox... 103 7e-21 UniRef50_Q39ZK6 Response regulator receiver modulated diguanylat... 103 7e-21 UniRef50_A6LR61 Diguanylate cyclase n=3 Tax=Clostridium RepID=A6... 103 7e-21 UniRef50_Q5QV72 Intracellular signaling protein (PAS,GAF,GGDEF d... 103 8e-21 UniRef50_Q8D5C1 FOG: GGDEF domain n=1 Tax=Vibrio vulnificus RepI... 103 8e-21 UniRef50_A8H680 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8H... 103 8e-21 UniRef50_A9CEL7 GGDEF family protein n=1 Tax=Agrobacterium tumef... 103 8e-21 UniRef50_B2JTM3 Diguanylate cyclase n=3 Tax=Burkholderia RepID=B... 103 8e-21 UniRef50_A8VUQ7 Response regulator receiver protein n=1 Tax=Baci... 103 8e-21 UniRef50_C9QDN5 Putative uncharacterized protein n=1 Tax=Vibrio ... 103 8e-21 UniRef50_Q1JXC4 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 103 9e-21 UniRef50_A9FZW1 FHA domain protein n=1 Tax=Sorangium cellulosum ... 103 9e-21 UniRef50_A8ZXH2 Diguanylate cyclase n=3 Tax=Desulfococcus oleovo... 103 9e-21 UniRef50_D0I9J2 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 103 9e-21 UniRef50_C7R6L5 Diguanylate cyclase n=4 Tax=Gammaproteobacteria ... 103 1e-20 UniRef50_B8FCK6 Response regulator receiver modulated diguanylat... 103 1e-20 UniRef50_C1A5L7 Putative two-component response regulator n=1 Ta... 103 1e-20 UniRef50_C6NZD9 Diguanylate cyclase/phosphodiesterase with PAS/P... 103 1e-20 UniRef50_A6DDG0 Putative uncharacterized protein n=1 Tax=Caminib... 103 1e-20 UniRef50_Q31IH0 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiom... 103 1e-20 UniRef50_C7I2H1 Diguanylate cyclase n=1 Tax=Thiomonas intermedia... 103 1e-20 UniRef50_D0SXM5 Predicted protein n=2 Tax=Acinetobacter lwoffii ... 103 1e-20 UniRef50_C6CQG0 Diguanylate cyclase n=7 Tax=Enterobacteriaceae R... 102 1e-20 UniRef50_A3Y6S3 PAS:GGDEF protein n=1 Tax=Marinomonas sp. MED121... 102 1e-20 UniRef50_A9KNZ0 Diguanylate cyclase with GAF sensor n=1 Tax=Clos... 102 1e-20 UniRef50_C6X759 Diguanylate cyclase/phosphodiesterase n=1 Tax=Me... 102 1e-20 UniRef50_Q39S35 Diguanylate cyclase with GAF sensor n=2 Tax=Geob... 102 1e-20 UniRef50_B7KWW4 Diguanylate cyclase n=5 Tax=Methylobacterium Rep... 102 1e-20 UniRef50_C1D6I3 Diguanylate cyclase n=1 Tax=Laribacter hongkonge... 102 1e-20 UniRef50_A7JY97 Ggdef domain protein n=8 Tax=Vibrio RepID=A7JY97... 102 1e-20 UniRef50_Q7CYR0 GGDEF family protein n=4 Tax=Rhizobium/Agrobacte... 102 1e-20 UniRef50_UPI00016C5356 FHA domain protein n=1 Tax=Gemmata obscur... 102 1e-20 UniRef50_C6RM00 Diguanylate cyclase n=5 Tax=Acinetobacter RepID=... 102 1e-20 UniRef50_A7GXF8 3-deoxy-d-manno-octulosonic-acid transferase n=8... 102 1e-20 UniRef50_B9JD30 Sensory box/GGDEF family protein n=12 Tax=Rhizob... 102 1e-20 UniRef50_B8DLP9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 102 1e-20 UniRef50_Q9KAQ3 Response regulatory protein (Sensory transductio... 102 1e-20 UniRef50_A3WKH9 Serine/threonine kinase with two-component senso... 102 1e-20 UniRef50_Q47FH1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 102 2e-20 UniRef50_A3QI98 Diguanylate cyclase n=1 Tax=Shewanella loihica P... 102 2e-20 UniRef50_B5JX81 Diguanylate cyclase n=1 Tax=gamma proteobacteriu... 102 2e-20 UniRef50_B9L7P4 Diguanylate cyclase/phosphodiesterase domain 1 n... 102 2e-20 UniRef50_Q2RLY1 Diguanylate cyclase (GGDEF domain) n=1 Tax=Moore... 102 2e-20 UniRef50_C6DCR6 Diguanylate cyclase n=6 Tax=Pectobacterium RepID... 102 2e-20 UniRef50_C8X2S3 Diguanylate cyclase n=1 Tax=Desulfohalobium retb... 102 2e-20 UniRef50_B2A6L1 Response regulator receiver modulated diguanylat... 102 2e-20 UniRef50_A1TWC4 Diguanylate cyclase n=2 Tax=Acidovorax RepID=A1T... 102 2e-20 UniRef50_A8UV88 Putative uncharacterized protein n=1 Tax=Hydroge... 102 2e-20 UniRef50_Q4ZZT3 GGDEF n=5 Tax=Pseudomonas syringae group RepID=Q... 102 2e-20 UniRef50_D1U463 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 102 2e-20 UniRef50_C4XS30 GGDEF domain protein n=1 Tax=Desulfovibrio magne... 102 2e-20 UniRef50_A3WM11 Signaling protein with a sensor domain and GGDEF... 102 2e-20 UniRef50_Q7MFB4 GGDEF family protein n=2 Tax=Vibrio vulnificus R... 102 2e-20 UniRef50_A3SMA4 Diguanylate cyclase, putative/response regulator... 102 2e-20 UniRef50_A8VQE2 Putative diguanylate cyclase n=1 Tax=Bacillus se... 102 2e-20 UniRef50_A0XYM4 Putative uncharacterized protein n=1 Tax=Alterom... 102 3e-20 >UniRef50_Q8XAZ4 Uncharacterized protein yneF n=65 Tax=Enterobacteriaceae RepID=YNEF_ECO57 Length = 315 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/315 (99%), Positives = 314/315 (99%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA Sbjct: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT Sbjct: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL Sbjct: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL Sbjct: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY TLTDDFNKLMVEADTCLYRSKKD Sbjct: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCLYRSKKD 300 Query: 301 GRNRTSTMRYGEEVV 315 GRNRTSTMRYGEEVV Sbjct: 301 GRNRTSTMRYGEEVV 315 >UniRef50_A8A075 Diguanylate cyclase (GGDEF) domain protein n=2 Tax=Enterobacteriaceae RepID=A8A075_ECOHS Length = 279 Score = 570 bits (1468), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/279 (99%), Positives = 278/279 (99%) Query: 37 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS 96 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS Sbjct: 1 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS 60 Query: 97 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 156 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS Sbjct: 61 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 120 Query: 157 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 216 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG Sbjct: 121 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 180 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 276 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY Sbjct: 181 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 240 Query: 277 LTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 315 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV Sbjct: 241 RTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 279 >UniRef50_D2TIF8 Putative signal transduction protein n=2 Tax=Enterobacteriaceae RepID=D2TIF8_CITRO Length = 484 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 245/306 (80%), Positives = 276/306 (90%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 + ADWFSEQFSTGVLIVPCMLTL IPG + RF+ EQMMP IALIVSV+ASVVIGGAGSLA Sbjct: 163 LFADWFSEQFSTGVLIVPCMLTLGIPGSVKRFRPEQMMPVIALIVSVLASVVIGGAGSLA 222 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 FPLPALIWCAVRYTPQVTCLLTF+TGAVEIVLVANSVI+I+V SP S PQMFSARLGI T Sbjct: 223 FPLPALIWCAVRYTPQVTCLLTFLTGAVEIVLVANSVINIAVASPLSAPQMFSARLGIVT 282 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 MAICPIMV+FSVAAINSLMKQ++LRADFDFLTQVYSRSGLYEALK + +Q++TVMLL Sbjct: 283 MAICPIMVAFSVAAINSLMKQISLRADFDFLTQVYSRSGLYEALKRQAYPASQNMTVMLL 342 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSINDNYGHECGD+VL VFARHIQ+IVGD+GLVARMGGEEFAV +P+ +P +G+ Sbjct: 343 DIDYFKSINDNYGHECGDRVLCVFARHIQRIVGDRGLVARMGGEEFAVVLPTSHPEEGMQ 402 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE IRK V LQPF WQQ+++YLTVSIGVG+G+ + T+TD FNKLMVEAD CLYRSK + Sbjct: 403 LAETIRKAVALQPFDWQQQSIYLTVSIGVGNGKIAAQTVTDIFNKLMVEADECLYRSKNE 462 Query: 301 GRNRTS 306 GRNRTS Sbjct: 463 GRNRTS 468 >UniRef50_C8QCH2 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b RepID=C8QCH2_9ENTR Length = 474 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 194/308 (62%), Gaps = 4/308 (1%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVLPR--FKAEQMMPAIALIVSVIASVVIGGAGSLA 60 DWFSEQFST ++++P +L + VL R +++P +++S+ +IGGAGSL Sbjct: 154 GDWFSEQFSTSLMLLPVLLARPLRTVLWRSLLHPGKLLPLTGVVLSLTIGAMIGGAGSLT 213 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPF-SIPQMFSARLGIA 119 FP+PALIWCA+ +T L+ +TG EI+LV++ V++I I + S RLG+A Sbjct: 214 FPVPALIWCAIVLPIPITSLVLLITGITEIILVSHGVMNIQGDDALLPISHLTSVRLGVA 273 Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVML 179 T+ I P++V+ S+ AI L ++++LRA+FDFLTQ+ SRSGLYE L+ + V++ Sbjct: 274 TITISPLLVAVSMDAIRQLNQRLSLRANFDFLTQLLSRSGLYENLRQEPFSPQRAAGVVM 333 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LD+DYFK+INDN+GH+ GD VL AR IQ +V ++GLV R GGEEF V V N Sbjct: 334 LDVDYFKTINDNFGHDAGDGVLEEIARRIQDVVNNRGLVCRFGGEEFVVVVFDYNHSQLY 393 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRA-SYLTLTDDFNKLMVEADTCLYRSK 298 +AE IR+ + + F Q T+ +T S+G+ G A + N+L+ AD LY SK Sbjct: 394 QLAEVIRQSMVREKFWLQGNTVTVTASLGLALGNAVNEREWQGVVNRLISAADKNLYLSK 453 Query: 299 KDGRNRTS 306 ++GRN+TS Sbjct: 454 RNGRNQTS 461 >UniRef50_D0FTB2 Conserved uncharacterized protein YneF n=3 Tax=Erwinia RepID=D0FTB2_ERWPY Length = 464 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 121/311 (38%), Positives = 184/311 (59%), Gaps = 12/311 (3%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKA----EQMMPAIALIVSVIASVVIGGAGS 58 + WFSEQ ST +L++P M++L LP+ A ++P + LIV++++++ +GG GS Sbjct: 150 SSWFSEQMSTSILLLPLMISLPRRQQLPQLAAALRDSSVLPLLTLIVTIVSAIWLGGGGS 209 Query: 59 LAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLG 117 L FPLPAL+WCA+ Y VTC LT +TG EI+LVA +V++I G F I + SARLG Sbjct: 210 LLFPLPALLWCAISYPLFVTCFLTMLTGISEIILVAGNVLNIQGKGDLFRIDSLSSARLG 269 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL-- 175 +A M I P++VS S + L+ ++ RAD+DFLT +RSGL L S + + Sbjct: 270 VAAMLIGPLIVSLSTLSNKKLVARITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGF 329 Query: 176 --TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 +++DID FK IND +GH GD VL+ A +++ + LV RMGGEEF + + + Sbjct: 330 IGAALVIDIDRFKDINDTWGHAAGDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGM 389 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 L+A ++R+ VE + L +TVSIG+ S S + + ++ ++ AD Sbjct: 390 TQPRSSLLANRLRQNVENNKIIFNGHDLSVTVSIGISSLNISNV---NSLDESIMRADEQ 446 Query: 294 LYRSKKDGRNR 304 LY +K GRN+ Sbjct: 447 LYIAKSSGRNQ 457 >UniRef50_C6CDM3 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDM3_DICDC Length = 469 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 177/309 (57%), Gaps = 8/309 (2%) Query: 4 DWFSEQFSTGVLIVPCMLTL--AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF 61 +WFS+QF T VL +P +LT+ I +P ++P + L S+I +I LAF Sbjct: 160 NWFSDQFYTSVLFLPLLLTVRSNIRLRIPALNFNDILPILFLAASLIVGAMISPLAILAF 219 Query: 62 PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVG--SPFSIPQMFSARLGIA 119 PLPAL WCA+ Y +T L+T TG +++++ A V I G F+ Q+ R+ IA Sbjct: 220 PLPALTWCAIVYPLWLTRLITLCTGTLQLIVSAEHVYAIYSGLHDEFT-NQVVITRISIA 278 Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LT 176 + P+ ++ + I L K++ L+A +DFLT SR G EAL + ++ + Sbjct: 279 AIIFSPLFMAMNAKTIRLLNKRLLLQASYDFLTNTLSRYGFNEALTNYGKEERYRNVSVN 338 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 +ML+DID+FK IND++GH+CGD+VL A I+ + ++GL++R+GGEEFAV +P Sbjct: 339 IMLIDIDHFKHINDSFGHDCGDEVLKQVAAIIKDTINEQGLISRIGGEEFAVVCFDYSPD 398 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 +A+K+R+ + F + Q + + +SIG+ + L + ++L +AD LY Sbjct: 399 AFYWLADKLRRRIYETTFMFNQSPVPVAISIGLAHASSPNGDLLNTVHQLCTQADKNLYA 458 Query: 297 SKKDGRNRT 305 +K+ GRN+T Sbjct: 459 AKRQGRNQT 467 >UniRef50_B1JAS6 Diguanylate cyclase n=5 Tax=Pseudomonas RepID=B1JAS6_PSEPW Length = 469 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/321 (38%), Positives = 179/321 (55%), Gaps = 14/321 (4%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIA--SVVIGGAGSLAFP 62 WFSEQFST VL++P +LT L R A+ + A L++ S+ GG G++AFP Sbjct: 153 WFSEQFSTAVLLLPVLLTAPSARALVRSGAQAVALAPLLVLLASLAFSIAFGGPGAIAFP 212 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV-GSPFSIPQMFSARLGIATM 121 + AL+WCA Y+P + LLT + G+ IV VA +++ SV S + + SAR+GIA + Sbjct: 213 IAALLWCAWTYSPFLVSLLTLIAGSTLIVAVAQNLMHFSVPQSELGVTTLMSARMGIAML 272 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHL--T 176 + P++V+ A SL+ ++A +A D LT +RS AL K Q L T Sbjct: 273 ILGPLVVACVSQANRSLLARLAHQATIDHLTGALTRSAFTRRANALLDSRQKHAQALPLT 332 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 +M+LDID+FKSIND +GH GD+VL FAR +Q + L+ARMGGEEF V +P + P Sbjct: 333 LMMLDIDHFKSINDRHGHGVGDQVLRQFARTLQDQLHGGELLARMGGEEFVVLLPGLAPE 392 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVG--SGRASYLTLTDDFNKLMVEADTCL 294 AE++R+ V+ +TVSIG+ +G TL ++L+ AD L Sbjct: 393 RASFTAERLRRAVQDLHLAKGDGRPQITVSIGLDGCAGHEPAPTL----DELLARADQAL 448 Query: 295 YRSKKDGRNRTSTMRYGEEVV 315 YR+K GRNR +V+ Sbjct: 449 YRAKAHGRNRVEVAETQRQVI 469 >UniRef50_C6CM30 Diguanylate cyclase n=1 Tax=Dickeya zeae Ech1591 RepID=C6CM30_DICZE Length = 470 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 186/308 (60%), Gaps = 6/308 (1%) Query: 4 DWFSEQFSTGVLIVPCMLTL--AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF 61 +WFS+QF T VL +P +LTL IP LP + +P + L+VS++ + ++G LAF Sbjct: 161 NWFSDQFYTAVLFLPLLLTLRSQIPLQLPMLRLSDALPLLLLLVSIVVAPLLGPVAILAF 220 Query: 62 PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI-SVGSPFSIPQMFSARLGIAT 120 PLPAL WCA+ Y + L+T GA E++L A V S P+ + Q+ AR+GIA Sbjct: 221 PLPALTWCAIVYPLWLIRLITLCVGATELILTAEHVYAFYSPQDPYFMHQIIIARIGIAA 280 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK-QTQH--LTV 177 P+M++ + I L ++ +A DFLT SR G EAL + ++QH + + Sbjct: 281 TIFSPLMMATNARTIRQLNARLLQQASHDFLTNTLSRYGFTEALTTHGQSVKSQHDAVNI 340 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ML+DID+FK+IND++GH+CGD++L A+ IQ+ V +GLV+R+GGEEFAV + NP Sbjct: 341 MLIDIDHFKNINDSFGHDCGDEILRQVAKVIQQAVSAQGLVSRIGGEEFAVVCFNYNPSA 400 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 +A+ +R+ ++ F + Q+ + +TVSIG+ S L D ++L AD LY + Sbjct: 401 FYRLADSLRQTIQQTVFLFNQQPVPVTVSIGIAHAPTSGKYLVDTVHELFPLADKNLYTA 460 Query: 298 KKDGRNRT 305 K++GRNRT Sbjct: 461 KREGRNRT 468 >UniRef50_D2C311 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech586 RepID=D2C311_DICD5 Length = 471 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 11/311 (3%) Query: 4 DWFSEQFSTGVLIVPCMLTLA--IPGVLPRFKAEQMMPAIALIV---SVIASVVIGGAGS 58 +WFS+QF T VL +P +LTL IP LP + QM A+ L++ S+ + ++G Sbjct: 161 NWFSDQFYTAVLFLPLLLTLQSRIPLHLP--ASLQMADALPLLLLLLSICIAPLLGPVAI 218 Query: 59 LAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI-SVGSPFSIPQMFSARLG 117 LAFPLPAL WCA+ Y + L+T GA E+++ A V + + P + Q+ AR+G Sbjct: 219 LAFPLPALTWCAIVYPLWLIRLITLCVGATELIMTAEHVYALYNPQDPMFLHQVVIARIG 278 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQH 174 IA P+M++ + I L ++ +A DFLT SR G EAL + Q Sbjct: 279 IAATIFSPLMMATNARTIRQLNARLLRQASHDFLTNTLSRYGFTEALSTHDQNIKSQQDA 338 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 + +ML+DID FK+IND++GH+CGD++L A IQ+ V +GLV+R+GGEEFAV + + Sbjct: 339 VNIMLIDIDNFKNINDSFGHDCGDEILRQVANVIQRTVSAQGLVSRIGGEEFAVVCFNYS 398 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 P +A+++R+ ++ F + Q+ + +TVSIG+ + + L D ++L AD L Sbjct: 399 PPAFYRLADELRQTIQHTVFLFNQQHVPVTVSIGIAHAQVAGKHLVDTVHELFPLADKNL 458 Query: 295 YRSKKDGRNRT 305 Y +K++GRNRT Sbjct: 459 YTAKREGRNRT 469 >UniRef50_A8GAZ5 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GAZ5_SERP5 Length = 482 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 185/315 (58%), Gaps = 17/315 (5%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPR----FKAEQMMPAIALIVSVIASVVIGGAGSLA 60 WFSEQFST +L++P +L L R ++ MP +AL+ S++ SV IGG G++A Sbjct: 158 WFSEQFSTNLLLLPVLLAAPRLKQLLRMQINWQLRASMPLLALLFSLVFSVYIGGPGAIA 217 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLV-ANSVIDISVGSPFS-IPQMFSARLGI 118 FP+PAL+WCAVRY LLT +TG EI + AN ++ + + + + + SARLGI Sbjct: 218 FPIPALLWCAVRYQLFTVTLLTLLTGMTEISSISANLMLYETPNNHIAFLDTLMSARLGI 277 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---- 174 A + + P++++ S+A L++++ A+ DFLT V +R+ L K+ L + +H Sbjct: 278 AMLVMGPLILASSIAVNRKLLRRLEHSANHDFLTGVLARNALTR--KAGELLEHKHKSKE 335 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 ++++L+DID+FK IND +GH GD+VL+ FA +++ + L R+GGEEFA+ +P Sbjct: 336 AVSLLLIDIDHFKQINDTHGHLVGDQVLASFAHIVRRELRHDQLFGRLGGEEFAIMLPRA 395 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 G+ +AE +R+ V+ K L +T+S+GV S + +LM AD Sbjct: 396 LAAQGVALAEHLRQLVQKADLLPTGKVPLNITISVGVAS---LGMNEVKSLEQLMNMADI 452 Query: 293 CLYRSKKDGRNRTST 307 LYR+K GRNR + Sbjct: 453 ALYRAKSQGRNRVES 467 >UniRef50_A0P392 GGDEF domain protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P392_9RHOB Length = 307 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/285 (35%), Positives = 152/285 (53%), Gaps = 5/285 (1%) Query: 26 PGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVT 85 P + +F E+ P I L+VS IA ++GG G++AFP+PAL+WC + Y T +LT Sbjct: 25 PARIRQFWQEKWAPLILLLVSCIAGTLVGGPGAIAFPVPALLWCGLVYPVFPTTILTLCI 84 Query: 86 GAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALR 145 G +V+++N + D S + + S RLGI+ +A+ PIM+S N+L+ ++ Sbjct: 85 GVWGLVILSNGLGD-SASLQLDVMTLVSIRLGISLVALAPIMLSCVTQNRNALVGRLQYL 143 Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 A D LT V +R+ E T ++++D+D FK++ND +GH GD VL F Sbjct: 144 ATHDQLTNVLNRNAFREEAARRLALGTSGFALLMVDLDDFKAVNDTHGHATGDTVLVNFV 203 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF-TWQQKTLYLT 264 ++ + L+ RMGGEEFAV +P VD + AE IR+ V +P K + +T Sbjct: 204 HRVKNTLPPGSLLGRMGGEEFAVLIPDCRQVDAVAEAENIRQSVGTEPVPAGDGKEVRVT 263 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 S+GV A D + L+ EAD Y +KK GRNR + Sbjct: 264 ASLGV---VAVEHGDADSLDTLLAEADRLCYLAKKRGRNRVEAIE 305 >UniRef50_D0IXN6 Diguanylate cyclase n=2 Tax=Comamonas testosteroni RepID=D0IXN6_COMTE Length = 473 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 101/320 (31%), Positives = 168/320 (52%), Gaps = 31/320 (9%) Query: 5 WFSEQFSTGVLIVPCMLT----------LAIPGVLPRFKAEQMMPAIALIVSVIASVVIG 54 W S ++ ++ +P +L L P L R ++P +++I S I Sbjct: 165 WLSSEWLNYMMFLPIVLAWPTRKQPVGHLGEPSPLRR-----ILPLLSVIALEAISYWIK 219 Query: 55 GAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGS----PFSIPQ 110 G GSLAF LPALIWCA+ Y LT +T L +S+I IS+G+ P + Sbjct: 220 GPGSLAFSLPALIWCALSYR---IFSLTLITA----TLCLSSIIFISLGTLEFTPAHFLE 272 Query: 111 MFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSP 167 S R+G+ + + P+ V+ S A N LM++++ + DFLT + +R + + Sbjct: 273 TLSFRMGLCMLVLGPLAVAGSHMARNELMQKLSHAVNHDFLTDMLARGAFMKQGQRILER 332 Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 + Q +++LD+D+FK IND++GH GD++L F++ + +++ + +V RMGGEEFA Sbjct: 333 CRQDGQPFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFA 392 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 VA+P V+ +A++I + + KT+ TVSIG+ + L + L+ Sbjct: 393 VALPKVDASAAQEIAKRINRAIRELRVPMNDKTMSATVSIGL--VHTTSLQAHQSLDMLL 450 Query: 288 VEADTCLYRSKKDGRNRTST 307 ++AD LY +K GRNR S+ Sbjct: 451 LQADQALYEAKAAGRNRVSS 470 >UniRef50_B7GZC2 Uncharacterized protein yneF n=10 Tax=Acinetobacter RepID=B7GZC2_ACIB3 Length = 473 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/277 (33%), Positives = 146/277 (52%), Gaps = 11/277 (3%) Query: 33 KAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVL 92 KA +P A+++S+ S G GSL +P+ ALIWCA+RY P + L+T T A I Sbjct: 198 KAIDFLPLFAVLISIGVSYYDSGPGSLLYPIAALIWCAIRYKPIIVALITSFTSAYIIYH 257 Query: 93 VANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS-LMKQVALRADFDFL 151 V+ + + S S R+G+ M + P+ VS S++A++S L++++ D L Sbjct: 258 VSGHYLLLYPQDYLS--NNISIRIGLIMMTVAPLTVS-SISALHSELIQKLQHAIAHDEL 314 Query: 152 TQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 T +R ++ L+ K+ + +LD+D+FK +ND+YGH GD+ L I Sbjct: 315 TSSLTRRQFLQSVRLLQEKVQKENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTI 374 Query: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP-FTWQQKTLYLTVSI 267 Q I+ L+ R GGEEFA+ +P +AE+IR + QP + + + +++ VSI Sbjct: 375 QNILHPHDLLGRFGGEEFAIFIPDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQVSI 434 Query: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 G+ SY L EAD LY++K+ GRNR Sbjct: 435 GISLYSPSY---HRSIESLFKEADDALYQAKRQGRNR 468 >UniRef50_A8GES9 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GES9_SERP5 Length = 500 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 106/332 (31%), Positives = 170/332 (51%), Gaps = 41/332 (12%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIP------------GVLPRFKAEQMMPAIALIV---- 45 LA W S +F+ + ++P LA P V R + + IA+++ Sbjct: 173 LALWLSSEFTNYITLMP--FILAFPRDWKGYLRSIFQAVTLRSQWPNTVRKIAVLLLLLL 230 Query: 46 SVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP 105 + S++IGG G++ FP+P L+W A+ ++ L + + + VL + ID+ + + Sbjct: 231 ACFGSILIGGPGAVIFPMPILLWLAMSFS-----LFSTMIAVLVYVLWCHLAIDLGLITT 285 Query: 106 FSIPQMF----SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY 161 +M S RLG+A +A+ PI V+ A N+L++++ A+ D LT V +RS Sbjct: 286 NLDMKMLQNTVSMRLGVALLALGPIAVASMNFARNALLQRLEHVANHDALTHVLTRSAFM 345 Query: 162 EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARM 221 + ++ + + +M+LDIDYFKSIND +GH GD L F R I + D L RM Sbjct: 346 QRGTRLVSQKGERICIMMLDIDYFKSINDRFGHAGGDAALLSFTRAITGDLRDNDLFGRM 405 Query: 222 GGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGV-----GSGRAS 275 GGEEFA+ P D L +AE++R VE++ L +TVSIG+ GSG+ Sbjct: 406 GGEEFAIVAPIAQQQDALSLAERLRHRVEIESINMPAGAALQITVSIGMVTCIGGSGQ-- 463 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + + L+ AD +Y++K GRNR +T Sbjct: 464 ------NLDNLLKIADLAVYKAKNSGRNRVAT 489 >UniRef50_C3JIZ7 Diguanylate cyclase n=2 Tax=Rhodococcus erythropolis RepID=C3JIZ7_RHOER Length = 471 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 109/329 (33%), Positives = 163/329 (49%), Gaps = 36/329 (10%) Query: 5 WFSEQFSTGVLIVPCMLTLAI-------PGVLPRFKAEQMMPAIALIVSVIASVVIGGAG 57 WFS +F + IVP +LT P + ++P L V +I VIGGAG Sbjct: 158 WFSSEFVNYMTIVPLVLTFPSLRRVDREPKAVATLLRRSVVPTALLAVCIILEWVIGGAG 217 Query: 58 SLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG 117 ++AF +PAL+ A+ VT +LT V+ A +VL A+ + +S S P S ++G Sbjct: 218 AIAFAMPALVTAALLTNVFVTSVLTAVSTAWTLVLTADGHLGLS--SEGVSPVSASVQIG 275 Query: 118 IATMAICPIMVSFSV----AAINSLMKQV-------ALRADFDFLTQVYSRSGLYEALKS 166 ++ +A+ PI V+ + A+ +L + V ALR D +FL R G Sbjct: 276 LSLLAVAPIAVACVILERRRALEALTQAVTHDDLTGALRRD-EFL----RRGGSVTGATD 330 Query: 167 PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEF 226 P + ++V+++D+D+FK +NDN GH GD L FA +++ + DK L AR+GGEEF Sbjct: 331 PRRHSGRPVSVLMMDLDHFKMVNDNLGHRAGDTALVSFADQVRRHLDDKHLFARLGGEEF 390 Query: 227 AVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVG---SGRASYLTLTDDF 283 V + V+ AE IR+ + + + TVSIGV G A D Sbjct: 391 VVLMAGVDLEGATETAEMIRRA-QAENSSAVLGDFGPTVSIGVACSPHGDA-------DL 442 Query: 284 NKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 +L+ AD LYR+KK RNRT + G Sbjct: 443 TQLVDCADEALYRAKKLDRNRTVALTVGS 471 >UniRef50_C6RK39 Diguanylate cyclase n=2 Tax=Acinetobacter radioresistens RepID=C6RK39_ACIRA Length = 445 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 145/278 (52%), Gaps = 19/278 (6%) Query: 36 QMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVAN 95 ++P L+ S+ S G G++ +P+ ALIWCA+ Y L+T ++ +++ Sbjct: 173 HILPIFVLLFSLSLSYYDSGPGAILYPIAALIWCALNYRHFTVALITSISCFYIAFFMSD 232 Query: 96 SVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS-LMKQVALRADFDFLTQV 154 + + + +M S R GI TMAI P+ VS S+ I S L++++ D LT Sbjct: 233 KYLTLYPEQYYL--EMISLRFGIITMAIAPLTVS-SINRIRSQLIRELQHHVAHDELTAS 289 Query: 155 YSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKI 211 +R + L +++Q L V++LDID+FK IND YGH+ GD+ L A I++ Sbjct: 290 LTRRQFMRSAHLLLRQRTQESQSLAVLMLDIDHFKLINDKYGHQAGDEALRACAAVIRRS 349 Query: 212 VGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGS 271 + L R+GGEEFA+ + V P + +AE+IR+ ++ +T + ++ I +G Sbjct: 350 LRGYDLFGRLGGEEFAIVLLDVGPAEAFEIAERIRETLKTHIIQLDAETQF-SIRISIG- 407 Query: 272 GRASYLTLTD-----DFNKLMVEADTCLYRSKKDGRNR 304 LTL + + L+ +AD LY +K+ GR+R Sbjct: 408 -----LTLFNPAVPHNIEALLHKADLALYEAKRSGRDR 440 >UniRef50_C3JRE9 Diguanylate cyclase n=2 Tax=Rhodococcus erythropolis RepID=C3JRE9_RHOER Length = 489 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/303 (29%), Positives = 150/303 (49%), Gaps = 18/303 (5%) Query: 24 AIPGVLPRFK--------AEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTP 75 +IP L F+ A +P +A V ++ I G +L P+PAL+WCA R + Sbjct: 158 SIPSSLAEFRRKLTARTVAALSVPLLATAACVPIALSIEGPIALVLPIPALLWCATRISV 217 Query: 76 QVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAI 135 T ++ V +++ + +DI + + + + + +A+ PI V+ + Sbjct: 218 PSTAFVSVVWSVWSLMMAGSGRLDIGDQAASTWNEDVITSIAVTLIALGPIAVACATEER 277 Query: 136 NSLMKQVALRADFDFLTQVYSRS---GLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNY 192 + +++ L +FD LT V SR G EA + + + + +++LD+D+FKSIND + Sbjct: 278 RAAERELFLAVEFDHLTGVLSRGAFLGHAEAELADAARTQSPVGLLMLDLDHFKSINDTH 337 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH GD VL+ FA + D L+ R+GGEEFAV +P + + +AE +R G +++ Sbjct: 338 GHMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAVLLPDCSFTRAIDVAEAVR-GAQVE 396 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 + + TVS+GV A T + LM AD LY +K+ GRN R G Sbjct: 397 YSA--ESDVTSTVSVGV----AWVDHATPALSTLMSVADEALYDAKRAGRNLVKVHRVGN 450 Query: 313 EVV 315 + V Sbjct: 451 DTV 453 >UniRef50_C6DKF8 Diguanylate cyclase n=5 Tax=Pectobacterium RepID=C6DKF8_PECCP Length = 489 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/331 (29%), Positives = 154/331 (46%), Gaps = 30/331 (9%) Query: 4 DWFSEQFSTGVLIVPCMLT--------LAIPGVLPRFKAEQMMPAIALIVSVIASVVIGG 55 DWFSEQ TG+++ L IP + P+ E + P + I+ ++ S+ Sbjct: 169 DWFSEQLGTGIILAFFFLRGKDILRALRNIP-LCPKHIRENIFPFLVFIIFLLVSLFFQD 227 Query: 56 AGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSV-IDISVGSPFSIPQMFS- 113 A + + L CA Y+ + LL +TG + L N V I I+ S I + Sbjct: 228 ASLITLSVIPLTLCAFNYSFPIMSLLCAITGVILNYLYINQVGILINSNSEAYINSFLTT 287 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS----L 169 ARL IA + + + VS V+ L+K + + D LT ++R L Sbjct: 288 ARLNIAMLIMAMLSVSHFVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGLLMN 347 Query: 170 KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 K+ + LT++ LDIDYFK +ND YGH GD++++ FAR + + ++ R GGEEF +A Sbjct: 348 KRKRQLTLLFLDIDYFKQVNDTYGHASGDELIASFARMLSANIRPSDILCRWGGEEFVIA 407 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGS-----GRASYLTLTDDF 283 + MAE +R E P + + T+SIGV + G +Y Sbjct: 408 AYDLTAEQSAAMAETLRHLTESTPLVLSDGREIRFTISIGVVTFPQYEGGNTY------- 460 Query: 284 NKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 L+ AD LY++K GRNR +R E++ Sbjct: 461 -DLIGLADEQLYKAKAQGRNRVC-LRLVEDI 489 >UniRef50_Q7CZM8 GGDEF family protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CZM8_AGRT5 Length = 415 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 122/223 (54%), Gaps = 20/223 (8%) Query: 92 LVANSVIDISVGSPFSIPQMFSARLGIATMA--ICPIMVSFSVAAINSLMKQVALR---- 145 +VA+ VI + P +IP M SA L I+ M IM+S + +M+ +R Sbjct: 163 IVASIVIPANAAVPNAIP-MTSA-LSISGMLGFTAIIMISAKI-----IMEDTEIRLHRL 215 Query: 146 ADFDFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT V +R GL +E +K S +++ ++L DID+FK IND YGH+ GD VL Sbjct: 216 AMTDHLTGVLNRRGLLEEFEHIKKRSHGSDRYVALVLFDIDHFKKINDRYGHQSGDAVLV 275 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 F Q+++G++GL RMGGEEFA+ +P + +AE IR + L T + + + Sbjct: 276 HFCNIAQRVIGERGLFVRMGGEEFALVAEVESPSSTVTLAEAIRSNLRLSKITARNEAIK 335 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +T S+G+ + D + +M EAD LY +KK GRNRT Sbjct: 336 VTTSVGISEA----MIKDADLSVMMTEADRALYAAKKAGRNRT 374 >UniRef50_A9C2H0 Diguanylate cyclase n=2 Tax=cellular organisms RepID=A9C2H0_DELAS Length = 496 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/264 (29%), Positives = 147/264 (55%), Gaps = 9/264 (3%) Query: 45 VSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGS 104 +S ++ +GG G+L+ +PA++ CA+RY V LL V+ A+++ ++ V+ S G+ Sbjct: 211 ISESIAIYLGGPGALSLTMPAMLLCAMRYRLFVVALLNLVSCAIKLATFSH-VLFSSPGT 269 Query: 105 PFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL 164 + FS RLG+A ++I P+ V+ ++ A ++ ++ + D LT + +R+ E Sbjct: 270 --ELETTFSFRLGLAMLSIGPLAVACTLMAFKDMLSKLRHAVNHDALTGLLARTSFLERA 327 Query: 165 KSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARM 221 + ++ Q +++LD+D+FK IND +GH GD+VL + + + + L+ R+ Sbjct: 328 QRTLERLQRERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVSARLSQALRPHELIGRL 387 Query: 222 GGEEFAVAVPSVNPVDGLLMAEKIRKGV-ELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEFAV +P + V +A+++ + E++ + T+SIG+G +Y L Sbjct: 388 GGEEFAVLLPGADCVTARAVAQRLCEATREIRIDMNDGAAICPTLSIGIGCTNMAYPPL- 446 Query: 281 DDFNKLMVEADTCLYRSKKDGRNR 304 + L+ ADT LY++K GR+R Sbjct: 447 -GLSALLRMADTALYQAKASGRDR 469 >UniRef50_D0S942 Response regulator n=2 Tax=Acinetobacter RepID=D0S942_ACIJO Length = 476 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/316 (28%), Positives = 156/316 (49%), Gaps = 27/316 (8%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLP-----RFKAE----QMMPAIALIVSVIASVVIGG 55 W++ + + ++P MLT L R + E ++P +++++SV + + G Sbjct: 167 WWTGEVLNCISLLPLMLTFPAAKKLKYLWNNRRQCETQFVDVLPLLSVLISVACTHLFFG 226 Query: 56 AGSLAFPLPALIWCAVRYT----PQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQM 111 G+L FPL LIW A+ Y + L+ FVT + D + + S+ Sbjct: 227 PGALLFPLAGLIWAALSYNLFYVSIINSLVCFVTYHSLTTYYISRTADNFLATSISV--- 283 Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPS 168 R+G+ + I P+++ + L K+V A+ D LT V +R + E L + Sbjct: 284 ---RIGLCMLMIAPLLLCIVSRNRHDLYKEVLYLANHDPLTHVGNRRFFFTQTENLLKEN 340 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 L ++ +++++LDID+FK +ND YGH GD +L FA ++ + ++ L ARMGGEEF V Sbjct: 341 LVKS--MSIIVLDIDHFKKMNDQYGHYIGDVLLQSFATTVKSNLREQDLFARMGGEEFVV 398 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 + + ++ ++AE+I + V L +TVS+GV L + L+ Sbjct: 399 VLNNTTEIESQIIAERICRAVATSKTQVAHAVLSMTVSLGVVH---QVLPTQNSLQSLLN 455 Query: 289 EADTCLYRSKKDGRNR 304 AD LY++K GRN+ Sbjct: 456 RADRALYQAKTLGRNQ 471 >UniRef50_B1YEE7 Diguanylate cyclase n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YEE7_EXIS2 Length = 373 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 104/180 (57%), Gaps = 11/180 (6%) Query: 139 MKQVALRADFDFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHE 195 ++Q A R DFLT +++ E LK ++ ++ + ++ +DID+FK IND YGHE Sbjct: 194 LQQTARR---DFLTGLHNFRAFTDHLEDLKQQTILHSREVALITVDIDHFKQINDTYGHE 250 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD+VL FA+ +Q V D G V+R GGEEF++ V + V L +AE++R+ + PF Sbjct: 251 AGDEVLRQFAKRLQDGVTDSGYVSRNGGEEFSILVERLTVVKVLALAEQLREQIAAAPFV 310 Query: 256 WQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 L+LT S GV AS+ T ++ +AD LY+SK++GRNR + EEV Sbjct: 311 LSSGMLLHLTASFGV----ASFPETTGQIQHIVTDADAALYQSKQNGRNRVTLFSLQEEV 366 >UniRef50_Q2RNW0 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RNW0_RHORT Length = 360 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 133/272 (48%), Gaps = 24/272 (8%) Query: 46 SVIASVVIGGAGSLA-------FPLPALIWCAVRYTPQVTCLL-TFVTGAVEIVLVANSV 97 +VI +VV+GG A FP+ R V+ + T T V I+ V + Sbjct: 99 AVILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGA 158 Query: 98 IDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSR 157 S +PF++ +A C ++ F +Q+ A D LT + +R Sbjct: 159 QGFSWIAPFNLA---------GALAGCTVLAYFYEGTRAKAARQLETLAKSDPLTGLANR 209 Query: 158 SGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGD 214 GL +A L +++ L++++LD+D+FKSIND YGHE GD VL A I+ ++ Sbjct: 210 RGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSINDRYGHEAGDGVLCHVAHVIKGMIRA 269 Query: 215 KGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRA 274 L+AR+GGEEFA+ +P + +AEKIRK +E +L +TVSIGV Sbjct: 270 NDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTALIGPGGSLSVTVSIGVAELDP 329 Query: 275 SYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 Y DF L AD LY++KK GRNR S Sbjct: 330 QY----PDFAALFSSADHRLYQAKKAGRNRVS 357 >UniRef50_Q310L5 Diguanylate cyclase (GGDEF domain) n=2 Tax=Desulfovibrio RepID=Q310L5_DESDG Length = 525 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 105/181 (58%), Gaps = 7/181 (3%) Query: 127 MVSFSVAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDI 182 M ++A N+L+ +++ L+AD D LTQ+++R L+ + ++ LT+M+LDI Sbjct: 331 MRHLALAVKNALLFREMRLQADHDGLTQLHNRRHFDTRLREELDRHGRYSMPLTLMMLDI 390 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK IND +GH+ GD VL A +++ + AR GGEEF +P + ++A Sbjct: 391 DYFKQINDRFGHQAGDAVLRELASVLRETIRTTDYCARYGGEEFVAILPHTDEQQARVLA 450 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++RK +E + F KT+ TVSIG+ + LT D+ L+ EAD LY +K +GR Sbjct: 451 ERLRKNIESRVFRHHGKTIQATVSIGLTGFKPGALTPRDE---LVREADAALYLAKANGR 507 Query: 303 N 303 N Sbjct: 508 N 508 >UniRef50_B7RWX6 GGDEF domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RWX6_9GAMM Length = 390 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 122/217 (56%), Gaps = 10/217 (4%) Query: 96 SVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVY 155 ++ ++++G ++ Q+ + G + A + V F + + + ++ A D LT++ Sbjct: 168 ALYEVAIGGDSNLGQIIA--FGAHSWAYVLVAVGFLASVLIEYQQHLSHLATEDPLTRLL 225 Query: 156 SRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV 212 +R GL +AL+ +H + +++DIDYFK +ND++GHE GD V+ + A I+++ Sbjct: 226 NRRGLQDALRISIAHARRHGLPTSAIMIDIDYFKRVNDSFGHETGDHVIQLVASMIERLC 285 Query: 213 GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSG 272 + +VAR GGEEF + + + + ++AE++R+ V +P Q + +T+S+GV S Sbjct: 286 RESDVVARTGGEEFLIILANTDSASARILAERVRQAVGERPLVVDQHRIPVTISLGVASA 345 Query: 273 RASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + + ++L EAD +Y +K+ GRNR +++ Sbjct: 346 SGEF-----NLDELSQEADQAMYLAKRGGRNRVASVE 377 >UniRef50_Q3AFS2 GGDEF domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFS2_CARHZ Length = 543 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 96/162 (59%), Gaps = 7/162 (4%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT +Y+R E L L+ +H T++LLDIDYFK IND YGH+CGD VL+ Sbjct: 379 AQKDELTGLYNRRYFLERLNEEHLRSRRHKLNYTIVLLDIDYFKKINDTYGHDCGDLVLN 438 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 F R ++ + L AR GGEEF V +P + L+AE++R+ V+ + +Q + + Sbjct: 439 DFGRFLKDTLRRTDLSARYGGEEFVVLLPQTGKKEAYLLAERLREKVKERVLIFQGQKVK 498 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 TVS+G+ A+Y +++ +L+ AD LY++K GR++ Sbjct: 499 YTVSMGL----AAYPEDAEEYRELLSLADKALYQAKNRGRDK 536 >UniRef50_C6BU46 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BU46_DESAD Length = 490 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 104/187 (55%), Gaps = 11/187 (5%) Query: 130 FSVAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ----HLTVMLLDIDY 184 S+A N++M ++ RA+ D LT+VY+R E L K+ Q L+++++D+DY Sbjct: 302 LSLALSNAIMFNKIKTRANRDGLTRVYNRRSFDERL-VEEFKRHQRLNTELSLLMVDLDY 360 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK++ND YGH GD VL AR +K +AR GGEEF + +P ++AE+ Sbjct: 361 FKAVNDTYGHMAGDMVLEKVARMFEKTFRSTDFIARYGGEEFVILLPHTREDQAEMLAER 420 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 IR +E T+Q K+ +T SIGV S R L + +++ +AD LY +K GRNR Sbjct: 421 IRAKIESCAMTYQDKSFNITASIGVSSVRPGSL---EKDTEIVRKADEALYDAKMQGRNR 477 Query: 305 --TSTMR 309 S MR Sbjct: 478 VVVSPMR 484 >UniRef50_A5V9Q8 Diguanylate cyclase n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V9Q8_SPHWW Length = 390 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 8/168 (4%) Query: 149 DFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT VY+R G +A + + +Q Q L+V++ DID FK+IND YGH GD+ L FA Sbjct: 227 DMLTGVYNRRGFEDAAERAIRNAHRQRQPLSVVVADIDGFKAINDRYGHGVGDRALRHFA 286 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 I+++V L+ R+GGEEFA+ + + P D + + E+IR+ + P + + + +T Sbjct: 287 SRIERLVRRGDLIGRIGGEEFALLLVNTRPQDAVEVVERIRRDIAAMPVSGPDRVV-MTA 345 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 S G+ R ++L L+ AD LYRSK DGR+R ++ EE Sbjct: 346 SFGLTGLRPGDISLA----SLLARADRALYRSKLDGRDRVTSAEELEE 389 >UniRef50_Q73IE7 Response regulator/GGDEF domain protein n=20 Tax=Rickettsiales RepID=Q73IE7_WOLPM Length = 460 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 21/194 (10%) Query: 132 VAAINSLMK----QVALRADF---------DFLTQVYSRSGLYEALKS---PSLKQTQHL 175 +A +NS +K Q ALR + D LT Y+R L++ S+++ + L Sbjct: 267 IARVNSQVKRKRYQDALRMNLFNNAEMSIKDPLTNCYNRRYFDAHLRNIVKDSVEKDRRL 326 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 ++M+LDIDYFK +ND++GH GD++L + I + + L+AR GGEEF V +P N Sbjct: 327 SLMILDIDYFKIVNDSFGHSAGDELLKQIQKRISENIRVTDLLARFGGEEFVVVMPDTNV 386 Query: 236 VDGLLMAEKIRKGVELQPFTWQQK--TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 D +AE+IRK + +PF K T +TVSIG+ + S L D+ + +V AD Sbjct: 387 SDAYTIAERIRKIIAKKPFILADKNTTHDVTVSIGIAEMQESDL---DNIKEFIVRADKY 443 Query: 294 LYRSKKDGRNRTST 307 LY++K GRNR T Sbjct: 444 LYKAKNSGRNRVVT 457 >UniRef50_C4LFT4 Diguanylate cyclase n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LFT4_TOLAT Length = 392 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 103/187 (55%), Gaps = 16/187 (8%) Query: 128 VSFSVAAINS--LMKQVALRADFDFLTQVYSRSGLYEA----LKSPSLKQTQHLTVMLLD 181 +SFS+ I S L +++A A +D LT +Y+R GL E S +V ++D Sbjct: 204 LSFSIMLITSQWLQQKLAAFASYDALTGIYNRYGLNEQSAALFNSDGKLSATDYSVAMID 263 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 IDYFK ND+YGH GD VL A +++ + ++AR GGEEF V +P N D L Sbjct: 264 IDYFKKTNDDYGHPVGDAVLKEVAERLRQNIRHHDILARYGGEEFIVVLPGTNITDALHW 323 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGV----GSGRASYLTLTDDFNKLMVEADTCLYRS 297 AE++R V +P Q + +T+SIGV G + S F++ + +AD LY++ Sbjct: 324 AERVRAQVAAKPIQVDQHAIQITLSIGVVALPGKDKHS------AFDEAIRQADIALYQA 377 Query: 298 KKDGRNR 304 K++GRN+ Sbjct: 378 KENGRNQ 384 >UniRef50_B5YJX2 Diguanylate cyclase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX2_THEYD Length = 252 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 8/160 (5%) Query: 148 FDFLTQVYSRS-GLYEALK--SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 FD LT VY+R+ G+ ++ + S + QHL+V +LDID FKSINDNYGH GD+VL+ Sbjct: 86 FDELTSVYNRTTGINRLMEEMARSKRHKQHLSVAMLDIDNFKSINDNYGHLAGDRVLNHI 145 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A I+ ++ +V+R GGEEF + +P + + + E++R+ + +P L +T Sbjct: 146 ALQIKNLLRASDVVSRYGGEEFLIILPETDEIKAFMALERVRENIARRPVKIGNGKLNIT 205 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 VSIG+ + + + D + AD L ++K+DG+NR Sbjct: 206 VSIGI-----TEVDINDSSTDAIQRADLALLKAKRDGKNR 240 >UniRef50_Q3IKV1 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IKV1_PSEHT Length = 394 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/194 (35%), Positives = 113/194 (58%), Gaps = 11/194 (5%) Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLK 170 A L I T+ C +++ F + A NS K + L A+ D LTQ+ +R G + + +K+ + Sbjct: 189 AHLFITTL--CALILPFIIFA-NSESKLINL-ANNDSLTQLLNRRGFFSTCKNIKANTAD 244 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + L +++LDID+FK +ND YGH+ GD+ L A+HI ++ + G+ AR+GGEEFAV + Sbjct: 245 KNHTLALIMLDIDFFKRVNDKYGHDVGDQALKWIAQHISQLFMNIGITARIGGEEFAVLL 304 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 +AE++ + QPF +++ L+VS GV S + L L + L++ A Sbjct: 305 NGYTLEQANTLAEQLSFNIRQQPFYCNDQSIPLSVSAGVSSTTINQLNLKE----LLLHA 360 Query: 291 DTCLYRSKKDGRNR 304 D LY +K+ GR++ Sbjct: 361 DKHLYLAKETGRDK 374 >UniRef50_Q486E7 Sensory box/GGDEF domain protein n=2 Tax=Proteobacteria RepID=Q486E7_COLP3 Length = 428 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 103/180 (57%), Gaps = 7/180 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKS 187 ++ N L++++ L + D LT++Y+R E L S S + + ++++LDID+FKS Sbjct: 251 DISEKNQLLEELILSSRRDPLTELYNRRYFTELLHSEITRSRRFKRGFSLLMLDIDHFKS 310 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH CGD L F++ + + + + R GGEEF V +P + V +++AEKIRK Sbjct: 311 INDRYGHACGDAALIAFSKAVTNSIREVDTICRWGGEEFLVLLPEIPKVTAMVVAEKIRK 370 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +E ++ + +TVSIG+ + ++ NK+ D LYR+K GRN+ ST Sbjct: 371 NIENLETIYEGDLIKVTVSIGLEYFSGDAIEMSSMINKV----DQILYRAKDTGRNKIST 426 >UniRef50_Q15NS8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15NS8_PSEA6 Length = 965 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 104/188 (55%), Gaps = 9/188 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVML 179 IC +V ++A S + + A D LT Y R ++L L +Q + LT++ Sbjct: 510 ICGSVVD--ISARKSDHQSIEYMASHDTLTGFYQRQAFEKSLHEAILFAKQQQEELTLLH 567 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 ++ID FK+IND +GH+ GD VL ++ ++KIV D G++ R+GG+EF + + N + Sbjct: 568 VNIDQFKAINDTHGHKAGDAVLRQLSQLMKKIVSDDGMIGRLGGDEFGILLVGNNAQNSF 627 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 ++A K+ V++ FTW+++ L L VSI G+ + +L+ AD+ Y +KK Sbjct: 628 MLANKLLNAVQVHEFTWEERPLTLGVSI----GQVPWNDTISSSEQLLSMADSACYMAKK 683 Query: 300 DGRNRTST 307 GRNR T Sbjct: 684 HGRNRLHT 691 >UniRef50_C8W1N2 Diguanylate cyclase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W1N2_DESAS Length = 368 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 104/182 (57%), Gaps = 8/182 (4%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALK--SPSLKQTQHL-TVMLLDIDYFKSINDN 191 +NSL ++ A DFLT + + G E + + KQT H+ +++ +DID+FK IND Sbjct: 185 LNSLYRKFRSEAKQDFLTGLNNVRGFDEEINFLMNNSKQTSHVVSLLFIDIDFFKKINDT 244 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH GD +L A + K+ K V+R GGEEF++ + + +AE+IR +E Sbjct: 245 YGHIAGDAILIELADLLPKLCSYKDTVSRNGGEEFSIILRDCPLSKAIEVAERIRSIIEK 304 Query: 252 QPFT-WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 PF + +TVSIGV A+Y D+ NKL+ +ADT LY++K+ GRN+ S ++ Sbjct: 305 YPFKLLNNNIINITVSIGV----ANYPDTIDEINKLIEKADTSLYKAKRTGRNKVSIIQD 360 Query: 311 GE 312 E Sbjct: 361 DE 362 >UniRef50_C8X007 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X007_DESRD Length = 531 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 60/159 (37%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +Y+R +E + + ++ +T++LLDIDYFK IND YGH+ GD L Sbjct: 360 DELTGLYNRRRFFELARGEFNRAKRYSSPMTILLLDIDYFKRINDEYGHDAGDTALRCIV 419 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 I + ++AR+GGEEF +P + D +AE+IR +E + TL++TV Sbjct: 420 SMIASQLRSLDVLARLGGEEFVALLPETHQFDAERIAERIRSEIESTAINLFETTLFVTV 479 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 SIGV A Y D +L+ AD +YR+K+DGRN+ Sbjct: 480 SIGV----AGYSKEMQDVGELINRADEAMYRAKRDGRNQ 514 >UniRef50_Q65IC8 GGDEF-domain containing protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65IC8_BACLD Length = 362 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 101/174 (58%), Gaps = 8/174 (4%) Query: 138 LMKQVALRADFDFLT---QVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 L+K+ + D+LT V ++ A S + ++ + L+++L+DIDYFK+IND YGH Sbjct: 191 LLKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDIDYFKTINDTYGH 250 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP- 253 GD +L ++K + +V+R GGEEF+V +P+ + +AE++RK VE Sbjct: 251 SNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIAERVRKEVETHTF 310 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 F K +++TVSIGV A++ + +L+ +AD CLYR+K GRNR T Sbjct: 311 FISHSKKIHITVSIGV----AAFPEVIHSTGELIEKADQCLYRAKHLGRNRVCT 360 >UniRef50_D1U9C4 Diguanylate cyclase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9C4_9DELT Length = 498 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/169 (37%), Positives = 97/169 (57%), Gaps = 6/169 (3%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEAL--KSPSLKQTQH-LTVMLLDIDYFKSINDNYGH 194 + K+V LRAD D LT++Y+R E L + ++ H L+++++D+D+FK +ND YGH Sbjct: 317 IFKEVKLRADRDGLTRIYNRHSFDERLIYEIKRRRRYNHDLSLLMVDLDHFKQVNDTYGH 376 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD VL + + L AR GGEEF V +P + +AE+IR+ ++ F Sbjct: 377 KAGDMVLRKVGEILTETFRTTDLAARYGGEEFVVLLPHTSEEAAWKLAERIRESIQGCVF 436 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + +T SIGV S A LT DD L+++AD LY++K +GRN Sbjct: 437 RFDGHEFSVTASIGVASVEAGALTRDDD---LLIKADKALYKAKNNGRN 482 >UniRef50_A8H0B9 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats n=5 Tax=Shewanella RepID=A8H0B9_SHEPA Length = 684 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 97/162 (59%), Gaps = 7/162 (4%) Query: 146 ADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A DFLT + +R+ ++ + + ++K+ L V++ DID FKSIND YGH+ GD + Sbjct: 519 AQTDFLTGIANRAHVFNRGQRMIDRAIKKKHPLAVIIFDIDNFKSINDQYGHQVGDLAIK 578 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A+ ++ + D L+ R+GGEEF + +P V D +L++E++R+G+ Q F + + Sbjct: 579 AVAKRGERWLRDCDLIGRIGGEEFLIVLPDVTEADAILISERLREGIASQAFKFDDVVIE 638 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 LTVSIGV + + LTD L+ AD LY++K G+NR Sbjct: 639 LTVSIGVAALKPPQTRLTD----LVNLADKGLYKAKFSGKNR 676 >UniRef50_Q47C76 PAS:GGDEF n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C76_DECAR Length = 548 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 16/192 (8%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVM 178 IC I S + I K++ + FD LT +++R + K + S + L+VM Sbjct: 358 GICGI--STDITPIKHYQKELERLSQFDELTNLFNRRHFFSLAKHELNRSSRYRSKLSVM 415 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +LDID+FK IND +GH+ GD VL+ + I + D + RMGGEEFA+ +P + Sbjct: 416 MLDIDHFKRINDGHGHKTGDLVLANIGKQIGDSLRDSDIAGRMGGEEFAILLPETDLEQA 475 Query: 239 LLMAEKIRKGVELQPFTW----QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 +MAE++RK V TW +TL T+SIG+ + + D L+ +ADT L Sbjct: 476 SIMAERLRKQV---AETWLDIGDGRTLNCTLSIGLATKSDQQI----DLENLLHQADTAL 528 Query: 295 YRSKKDGRNRTS 306 Y +K GRN+ S Sbjct: 529 YAAKNSGRNKVS 540 >UniRef50_Q0A9X2 Diguanylate cyclase n=3 Tax=Proteobacteria RepID=Q0A9X2_ALHEH Length = 295 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 102/180 (56%), Gaps = 8/180 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFK 186 V A +L +++ A D LT VYSR + E + ++ + LT++++D+D+FK Sbjct: 109 EVQARETLAEELHRLAMMDDLTGVYSRRQVLEVGERELARRRRQGLTPLTLLMMDLDHFK 168 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 IND YGH GD VL F+ +++ + + V R+GGEEF +P V+ GL +AE+IR Sbjct: 169 RINDKYGHAAGDTVLVAFSEVLRRNLRESDAVGRLGGEEFLAVLPDVDLQGGLALAERIR 228 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + WQ++ + LTVSIGV A L + + + ++ AD LY++K GRNR + Sbjct: 229 SEIAELRIPWQEEAIRLTVSIGV----AGILAVHESLDDTIMRADDALYQAKVAGRNRVT 284 >UniRef50_A4JKJ0 Diguanylate cyclase n=2 Tax=Burkholderia RepID=A4JKJ0_BURVG Length = 413 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 74/207 (35%), Positives = 105/207 (50%), Gaps = 15/207 (7%) Query: 107 SIPQMFSAR----LGIATMAICPIMVSFSVAAINS-LMKQVALRADFDFLTQVYSRSGLY 161 S P MF++ L +A AI P + S+ ++ L+ A+ DFLT SR G + Sbjct: 203 SSPLMFASTGNVILLVAAAAIMPTLSMSSMMMVHDVLLADAREAANRDFLTGALSRKG-F 261 Query: 162 EALKSPSL----KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGL 217 EA+ L KQ +++LD+D+FK+IND GH GD VL F R Q + + Sbjct: 262 EAVAHVQLAEAGKQGSPTALLILDLDHFKAINDTLGHAGGDAVLREFVRVTQMQLRRGDV 321 Query: 218 VARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYL 277 + RMGGEEFAV +P+ D +AE++R V QP T ++S GV RA Sbjct: 322 LGRMGGEEFAVLLPATALDDARAIAERLRHAVAAQPMTTAAGPCRYSISCGVAGWRAG-- 379 Query: 278 TLTDDFNKLMVEADTCLYRSKKDGRNR 304 + + L AD LY +K+ GRNR Sbjct: 380 ---ETLDHLSARADAALYEAKRSGRNR 403 >UniRef50_Q4KDW8 GGDEF domain protein n=6 Tax=Pseudomonas RepID=Q4KDW8_PSEF5 Length = 315 Score = 113 bits (283), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 65/190 (34%), Positives = 101/190 (53%), Gaps = 9/190 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALR-----ADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV 177 +C ++ + AINSL Q A + + D LTQ+Y+R + L+ + + + Sbjct: 127 VCLVIYDLTDVAINSLALQKANQQLQHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIAL 186 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++LDID+FKSIND +GH+ GD V+ + I + V D + R GGEEFA+ +P + Sbjct: 187 LMLDIDHFKSINDRHGHQAGDAVIKRVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAG 246 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 +AE++R+ VE Q + + T+S+G+ A D L+ AD LY S Sbjct: 247 ARTLAERLRQSVEEQEVIHNGQAIAFTISLGI----ACLDRPARDHRCLIEWADQALYAS 302 Query: 298 KKDGRNRTST 307 K+ GRNR ST Sbjct: 303 KRAGRNRVST 312 >UniRef50_C4KYJ1 Diguanylate cyclase n=1 Tax=Exiguobacterium sp. AT1b RepID=C4KYJ1_EXISA Length = 358 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 101/173 (58%), Gaps = 8/173 (4%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 IN +K+ + A+ D LT + +R +K ++ V++LDID+FK IND YGH Sbjct: 184 INHRVKEYKISAETDHLTGLENRRAWEMQMKKIK-ERYDTCNVLILDIDHFKQINDRYGH 242 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD++L F+ + + D + AR+GGEEF + +P ++ + + +AE+IR + F Sbjct: 243 ANGDEILKQFSELLHRETRDHDIKARIGGEEFGILIPMLSQSEVIGVAERIRSSISKHAF 302 Query: 255 T-WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 Q+ ++++VSIG+ +G+ ++ ++++ AD CLY++K GRNRT Sbjct: 303 KLLDQQVIHISVSIGIANGK------SEQLHEMVHLADDCLYQAKNSGRNRTH 349 >UniRef50_Q314F9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314F9_DESDG Length = 542 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 3/180 (1%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGL-YEALKSPSLKQTQHL--TVMLLDIDYFK 186 F ++ M+ + + D LT +++R L +E ++ + L + ++LDID+FK Sbjct: 350 FMAERVSQQMRDLEHLSFCDTLTGLHNRRHLAHEGTRTITACTEADLPCSCLMLDIDFFK 409 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +ND +GH+ GD VL AR I V K + RMGGEEFAV P+ + +AE+IR Sbjct: 410 QVNDAWGHDAGDMVLQSVARTISNAVRSKDMTIRMGGEEFAVIAPATDTASAFSLAERIR 469 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + +E P + +T+SIGV + + T + L+ +AD LY++KK GRNRT Sbjct: 470 RNIESTPVQAADDEIRITISIGVADMGGAPIFGTTQLDDLLAKADRALYQAKKKGRNRTE 529 >UniRef50_A3WKT4 GGDEF domain protein n=2 Tax=Alteromonadales RepID=A3WKT4_9GAMM Length = 364 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 141/292 (48%), Gaps = 33/292 (11%) Query: 32 FKAEQMMPAIALIV------SVIASVVIGGAGSLAFPL----PALIWCAVRYTPQVTCLL 81 F + M AI+LI S + +++IG + L PA I+ ++ P V LL Sbjct: 64 FGQRKNMLAISLIWLEVLYHSALGTLMIGWDSGFHYFLLMFVPA-IFVSMSLKPAVLTLL 122 Query: 82 TFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK- 140 + + L S P P +A +G+ + + + F A+ L K Sbjct: 123 GLWVYYLSLDL-------FSWYYPAMQPINATAVVGVHIFNLTVVFIMFGYLALYYLNKV 175 Query: 141 -----QVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNY 192 Q+ A D LT++ +R + E LK + ++++V+LLD+D+FKS+ND + Sbjct: 176 NLTHDQLRFYATTDPLTKLRNRRHMSELLKRALQNKHAEQRNVSVLLLDLDHFKSVNDTH 235 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GHE GDKVL + A ++ V D V+R GGEEF V +P N +AE+IRK + Sbjct: 236 GHEVGDKVLRITADILRDTVRDHDKVSRWGGEEFLVFLPRTNLNHAAQVAERIRKAIAKY 295 Query: 253 PF-TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 P+ T + + LT SIGV S L D N L+ AD LYR K+ GRN Sbjct: 296 PWHTVINENIQLTTSIGV-----SELKPDDSVNTLVKRADDALYRGKEAGRN 342 >UniRef50_A5P728 GGDEF domain protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P728_9SPHN Length = 243 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 12/196 (6%) Query: 116 LGIATMAICPIMVSFSVAA----INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ 171 L +A +C + V+ VA+ + L +Q+A A D LT + +R ++ + L+ Sbjct: 40 LAVAIPLVCAVPVALVVASQAEVLARLNRQLAYEASHDALTDLPNRREFFDEIGR-RLES 98 Query: 172 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 TV+L D+D FK +ND++GH GD+ L AR + + GLVAR+GGEEF V +P Sbjct: 99 GGGGTVLLADVDRFKQVNDHHGHHTGDEALRALARLFAREIASDGLVARLGGEEFGVLIP 158 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLY-LTVSIGVGSGRASYLTLTDDFNKLMVEA 290 + G +AE++RK VE Q F + + LT+SIG+ R + A Sbjct: 159 DTSLARGHEVAERLRKTVEAQDFHSPEGNRFPLTISIGIDCLRERESAYP------LRGA 212 Query: 291 DTCLYRSKKDGRNRTS 306 D+ LY +K +GRNR S Sbjct: 213 DSALYAAKSEGRNRVS 228 >UniRef50_C7LC06 GGDEF domain protein n=28 Tax=Brucella RepID=C7LC06_BRUMC Length = 264 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 99/164 (60%), Gaps = 7/164 (4%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 ++ RA D +T + +R L+EA+K S + + T++++D D+FK+IND++GH GD+ Sbjct: 77 ELQARARIDHMTGLLNREALFEAMK-ISRSRIETGTLLVIDADHFKAINDSFGHGVGDRA 135 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L + A +Q + LV R+GGEEF V +P + G+ +A++IR VE PF + Sbjct: 136 LKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGVRVAQRIRAEVENTPFHTTEYQ 195 Query: 261 LY-LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +Y LT+SIGV S S + ++++ AD CLY +K+ GRN Sbjct: 196 VYPLTISIGVASAPKS-----ETNSQVLSRADRCLYLAKQRGRN 234 >UniRef50_B3R1Q4 Putative di-guanylate cyclase, GGDEF domain; transmembrane protein n=1 Tax=Cupriavidus taiwanensis RepID=B3R1Q4_CUPTR Length = 420 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 9/208 (4%) Query: 100 ISVGSPFSIPQMFSARLGI-ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRS 158 +S G+ + P + L I A+ + VSF++ A + L + + RA D LT V R Sbjct: 185 MSQGAAWPRPLPWDGELAIFNVFALVGVSVSFALMAHDRLRRMLERRARHDDLTDVLLRG 244 Query: 159 GLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK 215 +E L+ L +Q + +TV +D+D+FK+IND YGH GD VL FA ++K +G Sbjct: 245 AFWEELEGACLQAERQRKPMTVAFVDLDHFKAINDVYGHLAGDSVLRHFAGLLRKTLGQG 304 Query: 216 GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRAS 275 L R+GGEEFA+ +P G L ++ V P + + TVSIGV + + Sbjct: 305 HLAGRLGGEEFAIVMPDTALETGRLACLRLATAVRATPCPSEPDPIAYTVSIGVAARQPG 364 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + + LM AD LY +K GRN Sbjct: 365 -----EGADALMRRADRALYDAKLKGRN 387 >UniRef50_A1ASG6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASG6_PELPD Length = 505 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 102/186 (54%), Gaps = 14/186 (7%) Query: 125 PIMVSFSVAAINSLMK-QVALR--ADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVM 178 P +S A I + Q LR ++ D LT +Y+R LY+ L + +H LT+M Sbjct: 309 PGTISVEFADITERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLM 368 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 LLDID+FK IND +GH+ GD VL+ A I I+ ++AR GGEEF +A P + Sbjct: 369 LLDIDHFKRINDTFGHDSGDLVLTQVAELISAILRSTDILARYGGEEFVIACPETDMDGA 428 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 ++AEKIR + + F +T+S+G+ S L DD N L+ ADT LY +K Sbjct: 429 AVLAEKIRSSIAMFSFP---TVGAVTISVGI-----SLLESKDDINALIKRADTALYAAK 480 Query: 299 KDGRNR 304 + GRNR Sbjct: 481 EMGRNR 486 >UniRef50_B5ZNS2 Diguanylate cyclase n=10 Tax=Rhizobiales RepID=B5ZNS2_RHILW Length = 392 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 91/171 (53%), Gaps = 6/171 (3%) Query: 144 LRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 L A D LT + +R L++ + + T V++ DID+FKS+ND +GH GD+V+ Sbjct: 219 LEAITDPLTGLLNRRALFDQYGTRPMGSTT--AVIVFDIDHFKSVNDRFGHASGDRVIKA 276 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 FA + + AR+GGEEFA+ + P L AE+IR+ E + + L Sbjct: 277 FAAELATHCRAGDIAARLGGEEFALVLKETMPGRAELAAERIRRAFEAREIEIDDEVLTC 336 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 TVS+GV GRA L DF+ ++ AD LY +K+ GRNR + E V Sbjct: 337 TVSVGVAPGRAKSL----DFDAMLSAADKALYAAKRGGRNRVELAGHLEAV 383 >UniRef50_Q3SFG4 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SFG4_THIDA Length = 570 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/165 (39%), Positives = 92/165 (55%), Gaps = 8/165 (4%) Query: 146 ADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R Y A S +L+ +V+LLDID+FK IND YGH GD VL Sbjct: 402 AQLDPLTGLNNRRAFYGMTAAAWSNALRHAHATSVLLLDIDHFKQINDRYGHAEGDAVLK 461 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A +++ V ++AR GGEEF V +P D L+AE++R + T + T+ Sbjct: 462 TVAGALKQSVRQGDVLARWGGEEFIVFLPETGLRDAALLAERLRVSIAALSVTGRVGTMA 521 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +T SIGV RA + TL + L+ AD CL+ SK+ GRNR ++ Sbjct: 522 VTASIGVAE-RADHATL----DSLIAAADACLFASKQQGRNRVTS 561 >UniRef50_Q21ED1 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21ED1_SACD2 Length = 476 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 99/164 (60%), Gaps = 9/164 (5%) Query: 145 RADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 +A D LT++Y+R G +E ++Q + L++++LDID+FK +ND+YGH+ GD+VL F Sbjct: 302 QARLDPLTKIYNRRG-FEERAIQLMRQKRTLSLLILDIDHFKYVNDHYGHDIGDEVLRQF 360 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ--PFTWQQKTLY 262 ++ I ++ D + AR+GGEEFAV + N LMAE+IR +E P + T+ Sbjct: 361 SKKIAGMIRDSDVFARIGGEEFAVILADQNLELAGLMAERIRATIESTELPVS-SDNTIK 419 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 TVSIGV S ++ D ++ + D LY++K GRN+ + Sbjct: 420 YTVSIGVSS-----VSEGVDIHRWLKTTDKLLYQAKAQGRNQVA 458 >UniRef50_A6W0K6 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0K6_MARMS Length = 556 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 12/160 (7%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT +Y+R L EAL +Q Q V+++D D+FK +ND++GH GD VL Sbjct: 400 DPLTHIYNRLALDEALHK-EYRQAQESKCPFAVIMIDADHFKRVNDSFGHTVGDLVLQKI 458 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ + VGDKG+VAR GGEEF V +P++N + +AE IR+ +E + + LY+T Sbjct: 459 AKLLTVQVGDKGIVARFGGEEFTVLLPNMNADEAKNIAEMIREALEKEEMS---DGLYVT 515 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 S GV A Y + +++ AD LY++K+ GRNR Sbjct: 516 ASFGV----AMYEIDDSHYEQVLNRADAALYKAKEQGRNR 551 >UniRef50_A4JR79 Diguanylate cyclase with PAS/PAC sensor n=4 Tax=Burkholderia RepID=A4JR79_BURVG Length = 432 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 61/132 (46%), Positives = 78/132 (59%), Gaps = 6/132 (4%) Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L+V +LDIDYFK IND YGH+ GD+VL V A+ I + GL AR GGEEF A+P + Sbjct: 301 LSVFILDIDYFKKINDGYGHDIGDEVLRVLAKVGMSIPHESGLFARWGGEEFVAALPGAD 360 Query: 235 PVDGLLMAEKIRKGVELQPF--TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 D +AE +R+ E Q F W+ K + TVSIGV + A D + LM AD Sbjct: 361 AADVRRIAETLRRRFEEQDFEHAWRVKPIQFTVSIGVVTREAG----ERDVDALMRRADR 416 Query: 293 CLYRSKKDGRNR 304 LY +K+ GRNR Sbjct: 417 ALYAAKESGRNR 428 >UniRef50_Q1LBF9 Diguanylate cyclase n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LBF9_RALME Length = 395 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 99/171 (57%), Gaps = 6/171 (3%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYE-ALKSPSLKQTQHLTVMLLDIDYFKSINDNYG 193 I++L++++ D D LT++++R E A ++ S ++L+D+D+FK INDN+G Sbjct: 211 IHALIERIQHERDTDALTRLHNRRSFEEIARETISRANGGVPGLILVDLDFFKLINDNHG 270 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD +L FAR ++++VG +G+ R+GGEEFAV +P + + +AE+IR +E Sbjct: 271 HASGDAILVEFARIVRRVVGARGIAGRLGGEEFAVLLPRTTGEEAIHIAEEIRATLERAR 330 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 F + +T S GV + + + LM AD LY +K+ GRNR Sbjct: 331 FETLPDSPRVTASFGVAVWQPP-----ESLDALMSRADGLLYTAKRSGRNR 376 >UniRef50_Q1N653 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N653_9GAMM Length = 378 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 60/168 (35%), Positives = 95/168 (56%), Gaps = 9/168 (5%) Query: 146 ADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A +D LT V++R G ++ L + ++ HL+VM++DID+FK +ND YGHE GD L Sbjct: 203 ASYDPLTGVFNRRGFFDQWQILSKRTHDKSCHLSVMMIDIDHFKHVNDKYGHEAGDAALK 262 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A + + + ++ARMGGEEFAV +P ++AE++R + F + + + Sbjct: 263 WLADLLAHELRENDVLARMGGEEFAVMLPGCESSQAEIVAERLRNCIFKTRFVYLNQVIP 322 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 +T+S+G + D L+V+AD LY++K GRNR MRY Sbjct: 323 ITISLGFITEDQP----ITDIKGLLVQADKGLYKAKDLGRNR--AMRY 364 >UniRef50_A4BIU7 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Reinekea blandensis MED297 RepID=A4BIU7_9GAMM Length = 318 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 57/161 (35%), Positives = 94/161 (58%), Gaps = 7/161 (4%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LTQ+Y+R+ E L + +Q +H L++++ DID+FK +ND YGH+ GD V+ A Sbjct: 159 DGLTQLYNRAYWEEMLSNEFKRQKRHAHDLSLIMFDIDHFKKVNDTYGHQVGDDVIRAVA 218 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 ++ + + R GGEEFA+ + + + LL AE++RK +E + + + L +TV Sbjct: 219 EEVRHNSRNTDIAGRYGGEEFALLLIDSDAENALLFAERLRKAIENRRVSTPEGELQVTV 278 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 S+GV + S+ +N + AD LY SK +GRNR++ Sbjct: 279 SLGVAPWKESF----HHYNAWIEAADKALYTSKDEGRNRST 315 >UniRef50_C6DJJ8 Diguanylate cyclase n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DJJ8_PECCP Length = 480 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/322 (25%), Positives = 157/322 (48%), Gaps = 23/322 (7%) Query: 5 WFSEQFSTGVLIVPCMLT----------LAIPGVLPRFKAEQMMPAIALIVSVIASVVIG 54 WFSE+ S+GV+ V L ++ + FK + +I+ IAS+ I Sbjct: 164 WFSEELSSGVIFVFLFLKVTRNVKNIFKISTSSIKKTFKKPLFILYPIIIIFCIASLNIT 223 Query: 55 GAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI--SVGSPFSIPQMF 112 + PL I+ ++ ++ L+ TG + N +I++ ++ + + Sbjct: 224 LSVLAILPL---IYLSLSHSFNKIILMCTATGIALNYIYINRLINVHDTIEKEYLFELSY 280 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL----KSPS 168 ++ + + I ++ SF + +K++ L ++ D LT + +R L + + S Sbjct: 281 LFQINTSVIIITVLIASFFINKNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSTR 340 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + +++++LDID+FK +ND YGH GD V+ F+ +++ + L+ R GGEEF + Sbjct: 341 DGDNKIMSLLVLDIDHFKKVNDTYGHAVGDNVIREFSTTLKQYTRPQDLLCRWGGEEFLI 400 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-KTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + ++ D L +AE+IR +E P + T SIGV + L +DF++ Sbjct: 401 IIQGLSVNDCLDIAERIRSIIEGAPLAISDGHIVRCTTSIGVSFFQ---LERIEDFHEAF 457 Query: 288 VEADTCLYRSKKDGRNRTSTMR 309 EAD LY +K+ GRNR ++++ Sbjct: 458 KEADELLYMAKEQGRNRVNSVQ 479 >UniRef50_A6X0V6 Diguanylate cyclase n=3 Tax=Brucellaceae RepID=A6X0V6_OCHA4 Length = 263 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 98/164 (59%), Gaps = 7/164 (4%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 ++ R+ D +T + +R L+EA+K S + + T++++D D+FK+IND +GH GD+ Sbjct: 78 ELQARSRIDHMTGLLNREALFEAMK-ISRSRIETGTLLVIDADHFKAINDTFGHGVGDRA 136 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L + A +Q + LV R+GGEEF V +P + G+ +A++IR VE PF + Sbjct: 137 LKLIAFALQNVTRKGDLVGRIGGEEFCVFLPGASGETGMRVAQRIRAEVENTPFHTTEYQ 196 Query: 261 LY-LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +Y LT+SIGV S + + ++++ AD CLY +K+ GRN Sbjct: 197 VYPLTISIGVASAPKN-----ETNSQVLSRADRCLYIAKQRGRN 235 >UniRef50_UPI0001787F83 diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787F83 Length = 539 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 107/202 (52%), Gaps = 17/202 (8%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDI 182 ++V V L +++ A +D LT++Y+RS + AL + +++ + L +L DI Sbjct: 340 LIVLIDVTDKARLQEELRQMAYYDGLTRIYNRSHFMKLSYALLNQAVRNREPLAFLLFDI 399 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND YGH+ GD+ L +K + + L AR GGEEFAVA+P + + A Sbjct: 400 DHFKRINDVYGHDIGDQALQHIVELTRKTLRAEDLFARYGGEEFAVAMPGQSTSEATAAA 459 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD-----------FNKLMVEAD 291 E+IR + QP T Q +L +T S GV + + S T D K++ +AD Sbjct: 460 ERIRAKLLAQPMTTPQGSLMITASFGVAAVKTSSHNGTVDAEAEEAWWDTELKKVLKQAD 519 Query: 292 TCLYRSKKDGRNRTSTMRYGEE 313 LY +K+ GRN T+R +E Sbjct: 520 RALYEAKRSGRN---TIRVSDE 538 >UniRef50_B6BJC6 GGDEF domain/pas/pac sensor domain protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BJC6_9PROT Length = 396 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 92/164 (56%), Gaps = 13/164 (7%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLS 202 A FD LT +Y+R E LK +++ ++ L+ + DID+FK++ND YGH+ GD+VL Sbjct: 239 AYFDNLTGIYNRRKFDEILKIETIRVHRYKRKLSALFFDIDHFKNVNDTYGHDTGDEVLK 298 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTL 261 + IQ D AR GGEEF + +P N ++ LMAEKIRK + F++ K Sbjct: 299 KMSNIIQLHTRDTDYFARWGGEEFILLLPETNVLEANLMAEKIRKTI----FSYDFNKVG 354 Query: 262 YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 LT+SIGV + + T + D LY++K DGRNRT Sbjct: 355 NLTISIGVSELKEKERSST-----FLKRLDKALYKAKNDGRNRT 393 >UniRef50_A4BG19 GGDEF domain protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BG19_9GAMM Length = 377 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 63/176 (35%), Positives = 94/176 (53%), Gaps = 8/176 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKS 187 S +N L + +A D LT + +R G+ E ++ S + Q +T +L D+D+FK Sbjct: 192 SYQKLNELKQDFERQASQDTLTHLLNRRGMRERIRYEVRRSQRNNQPITFILADLDHFKE 251 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND+YGH+ GD VL ++ +Q V + +AR GGEEF +P N + +AEKIR Sbjct: 252 INDHYGHDTGDTVLIQVSQLLQDSVRQQDSIARWGGEEFLFLLPETNARQAMQLAEKIRS 311 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +E P Q L T+S G+ A L L ++ + EAD LY++K GRN Sbjct: 312 IIESHPLNSDQPPLTTTMSFGI----AEMLDL-ENHQSTIAEADNRLYQAKSQGRN 362 >UniRef50_Q0K903 GGDEF domain protein n=3 Tax=Cupriavidus RepID=Q0K903_RALEH Length = 419 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/216 (32%), Positives = 107/216 (49%), Gaps = 9/216 (4%) Query: 103 GSPFSIPQMFSARLGIATM-AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY 161 G + P + L + + A+ + VSF++ A + L + + RA D LT V R + Sbjct: 188 GGAWPRPMPWDGELAMLNIFALVGVSVSFALMAHDRLRRMLERRARHDDLTDVLLRGAFW 247 Query: 162 EALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV 218 E L++ L+ Q + LTV +D+D+FK+IND YGH GD VL FA ++K G + Sbjct: 248 EELEAACLRAERQRKPLTVAFVDLDHFKAINDVYGHLAGDSVLRHFAGQLRKNFGQLEVA 307 Query: 219 ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLT 278 R+GGEEFA+ +P G L ++ V P + + TVSIG+ + + Sbjct: 308 GRLGGEEFAILMPDTALEQGRLACLRLATAVRATPCPSEPDPIAYTVSIGLAARQPG--- 364 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 + + LM AD LY +K GRN S G E Sbjct: 365 --EGADALMRRADRALYDAKLKGRNCVSLHPAGSEA 398 >UniRef50_B5ZQ84 Diguanylate cyclase n=5 Tax=Rhizobium RepID=B5ZQ84_RHILW Length = 385 Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 9/174 (5%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK 199 Q+ A D LT +R GL + L P+L +Q ++++++DID+FK +ND +GH GD Sbjct: 217 NQLTELAHHDPLTGALNRGGLAQRL--PALG-SQPVSLLIIDIDHFKQLNDRHGHASGDD 273 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 +L +FA + I+G L+AR GG+EF V + V+ D + +AE+IR Sbjct: 274 ILRLFASVSRSIMGSNDLLARQGGDEFLVVLKDVSGQDAVAIAERIRLAFAAAVLHQPDL 333 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 ++ T+SIGV + S DF +L+ +AD LYRSK++GRNR +GE Sbjct: 334 AVFPTLSIGVATRGKS----GGDFEQLIKKADEALYRSKREGRNRVKA--FGEN 381 >UniRef50_A4SQK1 GGDEF domain protein n=2 Tax=Aeromonas RepID=A4SQK1_AERS4 Length = 539 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/162 (38%), Positives = 93/162 (57%), Gaps = 8/162 (4%) Query: 148 FDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LTQV++R+ L E L+ L+ L + ++DID+FK+INDNYGH GDK L V Sbjct: 381 LDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDIDHFKNINDNYGHMAGDKALKVV 440 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ +Q + D +AR GGEEF V +P++NP E +R+ ++ PF ++ + +T Sbjct: 441 AKALQGALRDTDFIARFGGEEFVVLLPNINPDKYQKPLETLRQTIKSIPFRFRDARVEIT 500 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +SIG R T TD F + AD LY SK GR++ + Sbjct: 501 ISIGATLFREGDHT-TDAFER----ADKALYSSKHSGRDQVN 537 >UniRef50_A6F836 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F836_9GAMM Length = 325 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 103/183 (56%), Gaps = 12/183 (6%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSIND 190 + +L K++ RA D LT + +R YE + QH LT++L+DID FK IND Sbjct: 135 LQALTKELHTRASTDELTVISNRRNFYE-MAEIEFINAQHGQKPLTLLLIDIDNFKIIND 193 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 ++GH GD VL FA++I+ + + R+GG+EFA+ +P+ + + L +AE R + Sbjct: 194 SFGHAAGDMVLKAFAQNIKTELRSGDIFGRLGGDEFAILLPNTDCNESLPLAELFRNTIA 253 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN---RTST 307 +++ L LT SIG+ A+ ++ + +M ADT LY++K GRN R ST Sbjct: 254 KMKIDHKEQHLQLTASIGIVQSSAAMQSI----HAMMNAADTALYQAKSAGRNTVCRCST 309 Query: 308 MRY 310 M+Y Sbjct: 310 MQY 312 >UniRef50_C7R6Y0 Diguanylate cyclase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6Y0_KANKD Length = 469 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 10/177 (5%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKS 187 + A+N ++++A D LT+V +R E S S + + L +M++D D+FK Sbjct: 288 ELKAVNQKLEELAAT---DSLTRVANRREFMKRSEEEMSRSSRNSTDLCLMVIDFDHFKE 344 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH+ GDKVL F + ++++ L+ R+GGEEFA+ +P N + +AE++R+ Sbjct: 345 INDQYGHQAGDKVLKDFVKLAKEVMRPSDLLGRIGGEEFALLLPETNIRSAVKVAERLRQ 404 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +E + K + LT+SIGV A Y D K + AD LY++K GRNR Sbjct: 405 HIEEESIVIGSKRIKLTISIGV----AEYQPKVDTVKKWLHRADEFLYQAKDKGRNR 457 >UniRef50_A1T013 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T013_PSYIN Length = 406 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 14/172 (8%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK 199 K++A +A D LT +Y+R +Y+ + K ++ ML+D+D FK +ND YGH GD Sbjct: 243 KRLAHKAFHDSLTDLYNRDAIYKWIHEHCGK-VNSMSCMLIDLDNFKRVNDTYGHSKGDN 301 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 VL +FA ++ + +KG++ R GGEEF V VP + L +AEK+R P Q K Sbjct: 302 VLKIFANLFKEKIAEKGVIGRWGGEEFIVFVPDRDKKTALALAEKVRIACAQTPLFLQGK 361 Query: 260 TLYLTVSIGVGSGRASYLTLTDDF-----NKLMVEADTCLYRSKKDGRNRTS 306 + TVSIGV + TD F ++ +AD +Y SK G+NR + Sbjct: 362 EIITTVSIGV--------SYTDSFAQIKPKDIIKQADHNMYLSKSLGKNRVT 405 >UniRef50_C0QSJ8 Diguanylate cyclase/phosphodiesterase n=1 Tax=Persephonella marina EX-H1 RepID=C0QSJ8_PERMH Length = 621 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 104/191 (54%), Gaps = 16/191 (8%) Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL 175 LG+AT + + F + ++KQ RA D LT V++R+ L E LK Sbjct: 195 LGLATFTVITLFFIFYYFIKSFILKQ---RAYTDSLTGVFNRNYLEEITDVIDLKD---Y 248 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV-- 233 VML+DID+FK IND YGHE GD+VLS FA I++ + ++ R GGEEF V + + Sbjct: 249 IVMLVDIDHFKRINDTYGHEIGDRVLSKFAELIKQNLRRDDIIIRYGGEEFLVLLKNYRK 308 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 D L +AE++ +E F+ + +TVSIG+ LTD K ADT Sbjct: 309 QKKDSLKVAERLMDTIENTEFSG----IRITVSIGINMDTDKSRNLTDAIKK----ADTA 360 Query: 294 LYRSKKDGRNR 304 LY++K++GRNR Sbjct: 361 LYKAKREGRNR 371 >UniRef50_D2R798 Diguanylate cyclase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R798_9PLAN Length = 500 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 10/165 (6%) Query: 143 ALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYGHECGD 198 A+ A D LTQV +R + L+ L + H T+M+LD+D+FK ND +GH+ GD Sbjct: 118 AVEARTDALTQVANRRAFDDELRR-CLSERDHNKTVSTLMILDVDHFKKFNDTHGHQAGD 176 Query: 199 KVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ 258 +VL AR ++ LVAR GGEEFA+ P V+ + AEK R+ V F +Q Sbjct: 177 EVLRGVARVLRNAFSSAELVARYGGEEFAIVFPGVSFAACQISAEKARQAVATANFRFQG 236 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 K+L +T S G+ S L TD+ + + AD LY SKK GRN Sbjct: 237 KSLSVTASAGL-----SELLPTDNEQEWIRRADEALYASKKAGRN 276 Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L++M++ +D + +G VL V ++ +Q + D V R+G + FA+ +P Sbjct: 357 LSLMMVQVDGLMRVATEHGPTAAATVLRVTSQIMQATMRDMDHVTRLGEDTFALLLPGAK 416 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 +D ++E++R V+ + + T+++G A ++ DD ++ A L Sbjct: 417 IIDAHSVSERLRAAVQKCRLPRRAGAAWFTITVG-----AVEVSNGDDMRLILERARRAL 471 Query: 295 YRSKKDGRN 303 + GRN Sbjct: 472 QAAIAQGRN 480 >UniRef50_B9JVD4 GGDEF family protein n=1 Tax=Agrobacterium vitis S4 RepID=B9JVD4_AGRVS Length = 420 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 7/168 (4%) Query: 149 DFLTQVYSRSGLYEALKS--PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAR 206 D LT +R GL E + ++ + + L +++ D+DYFK IND +GH+ GD VLS FA+ Sbjct: 219 DPLTGALNRRGLIETVGELKHTVARDRLLALLVFDLDYFKHINDTFGHQAGDTVLSSFAQ 278 Query: 207 HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVS 266 +G+ + AR GGEEF + + +AE+IR + P T +Q + LT S Sbjct: 279 MTGGALGNDAIFARSGGEEFCAVMAVADLRQAAGVAERIRYMIASTPITTEQGVVRLTTS 338 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 IG+ + DF+ M +AD LY +K DGRNRT+ R GE V Sbjct: 339 IGLSAATVEAF----DFDTAMRQADHGLYTAKADGRNRTAVAR-GETV 381 >UniRef50_D0LIN2 Diguanylate cyclase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIN2_HALO1 Length = 364 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 99/169 (58%), Gaps = 9/169 (5%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGH 194 LM++ ALR D LTQ Y++ E L S + + + L+++L+D+D FK IND YGH Sbjct: 138 LMQESALR---DGLTQAYNKRYFSERLDSEVRFAQRHKEPLSLLLMDLDGFKQINDRYGH 194 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD+VL FAR +Q+ + ++ + AR GGEEFAV S++ D L MAE++R Sbjct: 195 IAGDQVLHAFARAVQRSIRNEDVFARYGGEEFAVLSRSISVEDALSMAERLRALTAELTV 254 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +Q + + LTVSIGV S L + D +L+ AD LY +K GRN Sbjct: 255 EFQNRRIGLTVSIGVAS--VPELQVA-DCTELLGAADRALYWAKAHGRN 300 >UniRef50_Q88RK0 GGDEF domain protein n=3 Tax=Pseudomonas putida RepID=Q88RK0_PSEPK Length = 645 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 11/169 (6%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHE 195 +Q AL D LT + +R+ E ++ L + HL + +LD+D+FK INDNYGH Sbjct: 481 QRQKAL---LDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDNYGHL 537 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GDKVL + A ++K + + +AR GGEEF + +P P +AE +R VE PF Sbjct: 538 AGDKVLKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAVAAQVAEVLRATVEACPFH 597 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 ++ + + +T SIG+G+ R+ + ++++ AD LYR+K+ GRNR Sbjct: 598 FKGERVVITTSIGLGAFRSGERS-----DQVLKRADAALYRAKELGRNR 641 >UniRef50_A6UB49 Diguanylate cyclase n=2 Tax=Sinorhizobium RepID=A6UB49_SINMW Length = 438 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 8/164 (4%) Query: 149 DFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT SR L E + + L + + +LLD+D+FK IND YGH CGD L+ FA Sbjct: 248 DGLTGALSRGALMEEGEQIFAECLTRRRPAAFLLLDLDFFKQINDQYGHACGDMALAHFA 307 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + + +G++ R+GGEEF + +P +AE+I + V P + + LTV Sbjct: 308 DTVSTFLAGRGVLGRIGGEEFGIVLPDHTEEQAKALAEEICRIVRETPAGRSHQRIRLTV 367 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 SIG+ + A + T+ D +M+ AD LY SK DGR+R + R Sbjct: 368 SIGIAAATA-HETIAD----VMIRADLALYDSKADGRDRCTIAR 406 >UniRef50_C7LVZ4 Diguanylate cyclase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVZ4_DESBD Length = 483 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 137/290 (47%), Gaps = 30/290 (10%) Query: 23 LAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLT 82 L +PG LP + + + + + + + + G A L C P++ L+T Sbjct: 201 LFLPGTLPHAQQAEWINHLLSVAARLGKQEVRGYQVSALELKD---CKPGNPPELEELIT 257 Query: 83 FVTGAVEIVLVANSVIDISVGS-PFS---IPQMFSARLGIATMAICPIMVS-FSVAAINS 137 + +++GS PF I +++LG + I + ++A N Sbjct: 258 ---------------LPLTLGSEPFGALVICSQDASKLGQDRLRILSSAANHLALAMRNG 302 Query: 138 L-MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYG 193 L ++ RAD D LT++ +R L+ + +H L++M++D+DYFKSIND YG Sbjct: 303 LEFRKTKARADHDGLTRISNRHHFDIRLREEMKRHQRHQDELSLMMIDLDYFKSINDTYG 362 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H+ GD VL + + + + AR GGEEF V +P ++AE++R + Sbjct: 363 HQAGDMVLQEVGKILNNTLRESDFPARYGGEEFVVILPQTREDQAWILAERLRSQIGQTF 422 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 F Q+K +T SIG+ + LT + L+ ADT LY++K +GRN Sbjct: 423 FRSQKKRFRVTASIGIAGIKPCALTPPE---TLLRNADTALYQAKTNGRN 469 >UniRef50_A6F6I7 Hypothetical GGDEF domain family protein n=1 Tax=Moritella sp. PE36 RepID=A6F6I7_9GAMM Length = 505 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 9/161 (5%) Query: 148 FDFLTQVYSRSGLYEALKSPSLKQTQ----HLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 D LTQVY+R+ L E K K+ Q + T+ ++DID+FK+IND++GH GDK L + Sbjct: 345 LDSLTQVYNRTALDERFK-LEFKRWQRYKTNTTIAMVDIDHFKNINDSFGHIAGDKALKI 403 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 AR +QK + +AR GGEEF + + V P + +M +K+R ++ PF ++ K + + Sbjct: 404 VARALQKSIKSSDFIARFGGEEFVLLLADVAPSEIQVMLDKLRNTIKNIPFRFKGKQISI 463 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 T+SIGV + D F + AD LY +K GR++ Sbjct: 464 TISIGVTQFSLDDNEIVDPFER----ADKALYEAKSSGRDK 500 >UniRef50_A6SZ23 Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SZ23_JANMA Length = 417 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 103/188 (54%), Gaps = 13/188 (6%) Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LT 176 TM + +M++ ++++ + A+ D LT+ SR L + L+ + L+ Sbjct: 223 TMTMAAVMLTH-----DAMLANLEDAANHDHLTEALSRKRLEAVAREQILRAGKFGRPLS 277 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 ++++D+D+FK IND YGH GD+VL FAR + + D + R+GGEEF + +P+ + V Sbjct: 278 LLIIDLDHFKRINDTYGHAGGDEVLREFARMTRASLRDGDALGRLGGEEFGILLPNTDTV 337 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 L +A ++R+ E + + ++SIG+ + R ++F++L + AD LY Sbjct: 338 GALAIARRLREDSERHLISGTFGECHYSISIGIATWRDG-----ENFDRLSIRADRALYT 392 Query: 297 SKKDGRNR 304 +K GRNR Sbjct: 393 AKNSGRNR 400 >UniRef50_Q47X90 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47X90_COLP3 Length = 364 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 104/183 (56%), Gaps = 10/183 (5%) Query: 131 SVAAINSLMKQV---ALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDY 184 SV A +SL K V + D LT +Y+R +E K + + ++ + +++++LDID Sbjct: 186 SVEANDSLEKSVNELHRLSIMDNLTNIYNRRYFFEMSKKLIATAFREQKPVSLIMLDIDL 245 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK +NDNYGH+ GD +L + ++K++ + AR+GGEEF + + + + ++AEK Sbjct: 246 FKRVNDNYGHQAGDCILIDLVKELEKVMRKSDVFARIGGEEFTILLNNTSLEGAKVIAEK 305 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +R +E + F + ++ +T+SIGV ++ D L +AD LYR+K GRNR Sbjct: 306 MRLTIENKVFIYNTTSIDITISIGVSELNTENTSIED----LYKQADKQLYRAKHKGRNR 361 Query: 305 TST 307 T Sbjct: 362 VCT 364 >UniRef50_Q2RRD4 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RRD4_RHORT Length = 686 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 107/186 (57%), Gaps = 9/186 (4%) Query: 126 IMVSFS-VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLD 181 + SF+ ++ +L +++ A+ D LT + +R + +AL+S + T++ L+VM+LD Sbjct: 493 VFASFNDISQTKALERELRALAERDSLTGLANRLRVMDALRSEFDRVTRYGGALSVMMLD 552 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D FK +ND +GH CGD+ L FA + L+ R GGEEF V +P L+ Sbjct: 553 LDRFKVLNDRHGHVCGDEALRHFAASALATLRTNDLLGRSGGEEFIVLLPGAALGAAKLI 612 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 E++R V+ +P +WQ +++ L+VSIG+ S + + D + L+ AD L+ +K +G Sbjct: 613 GERLRAAVQDKPLSWQGRSVALSVSIGLASRQ-----IGDTPDSLLGRADQALHLAKANG 667 Query: 302 RNRTST 307 RNR T Sbjct: 668 RNRLET 673 >UniRef50_B7GHV8 Signal transduction diguanylate cyclase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHV8_ANOFW Length = 363 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 95/173 (54%), Gaps = 8/173 (4%) Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNY 192 +++ A DFLT +Y+ + L+ K + L ++L DID FK +ND+Y Sbjct: 185 KEMLQHYKAWATTDFLTGLYNVRQFHALLRENIAKANEQQSCLALILFDIDRFKCVNDSY 244 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH+ GD +L I+ +V G R GGEEF++ +P+ + + AE IR +E Sbjct: 245 GHDGGDVILRHLGELIRSLVPKNGFSFRNGGEEFSILLPTCER-EAMAFAEHIRTTIEQH 303 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 F QQ+T+++T+SIG+ + + TL + +L +AD LY +K+ GRNRT Sbjct: 304 SFFVQQQTVHITISIGI----SVFPTLATNEPELFKQADIALYEAKQQGRNRT 352 >UniRef50_Q1MYJ5 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Bermanella marisrubri RepID=Q1MYJ5_9GAMM Length = 642 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 98/163 (60%), Gaps = 9/163 (5%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT++++R + +S + +H + +++LDID+FK +NDN+GH GD L A Sbjct: 475 DALTKIHNRYFFDQHWRSEFKRAHRHKMSIALIILDIDHFKKVNDNFGHPAGDLCLQKVA 534 Query: 206 RHIQ-KIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 + I+ + + LV R+GGEEFAV +P + + +AEKIR +E + +W+ KT+ +T Sbjct: 535 QSIRIQANRESDLVCRLGGEEFAVILPGTDEMGAYEVAEKIRHTIEKRHISWEGKTIKIT 594 Query: 265 VSIGVG--SGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 VSIG+ + R S + N + +AD LY++K +GRNRT Sbjct: 595 VSIGISAMTPRKSDEKMR---NIMFNQADQALYQAKGNGRNRT 634 >UniRef50_Q1N175 Diguanylate cyclase (GGDEF domain) n=1 Tax=Bermanella marisrubri RepID=Q1N175_9GAMM Length = 294 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 109/204 (53%), Gaps = 18/204 (8%) Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADF-------DFLTQVYSRSGLYEALKSPS 168 LG I P +S +A + S +++ R D D LT +Y+R +E + Sbjct: 97 LGAVDYVIKPYSLSVLLARVRSALREKE-RLDLMEKWATTDPLTGLYNRRFFFEQAQR-E 154 Query: 169 LKQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 L++ Q + ++LDID+FK +ND YGH GD VL A+ ++ L R GGE Sbjct: 155 LERVQRNETDASFIILDIDHFKKVNDEYGHLVGDDVLEGLAKLFKETFRKVDLCCRFGGE 214 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EF + +P + LL+AE+ RK VE F ++ L++T+S+GV S + TL D Sbjct: 215 EFVICLPDTDTEGALLVAERTRKKVEELSFNTEKGPLHVTISLGVSSANENT-TLED--- 270 Query: 285 KLMVEADTCLYRSKKDGRNRTSTM 308 ++ AD LY++K++GRNRT ++ Sbjct: 271 -MLKRADDALYQAKQNGRNRTESL 293 >UniRef50_A0LAY9 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAY9_MAGSM Length = 220 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 104/186 (55%), Gaps = 9/186 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVML 179 I ++ ++ + ++ ++Q+ + A D LT + +R G E K S + + L V++ Sbjct: 29 IISLVGAWLIYSLRKALQQLEVMATHDKLTGILNRHGFQERGKYIIDQSQRHSWPLAVVM 88 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +DID+FK IND++GH+ GD VL ++K V +VAR+GGEEFA+ +P+ + Sbjct: 89 MDIDHFKKINDSFGHDIGDLVLQSLGSELKKSVRSTDIVARLGGEEFALILPNTDSKHAH 148 Query: 240 LMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +A+ IRK +E + K L T+S+GV SG D + L+ +AD LYR+K Sbjct: 149 QIADSIRKKIETSRLSLPDGKFLTYTLSLGVTSGLG-----IDKMDLLLNQADNALYRAK 203 Query: 299 KDGRNR 304 GRNR Sbjct: 204 GTGRNR 209 >UniRef50_B0TJ24 Periplasmic/7TM domain sensor diguanylate cyclase n=4 Tax=Shewanella RepID=B0TJ24_SHEHH Length = 623 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 102/181 (56%), Gaps = 7/181 (3%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDY 184 + ++ +N +++ + D LT V +R+ + + S +Q L++++LDID Sbjct: 437 LEIALRELNEANQKLTEQTRIDSLTGVKNRASFDRRILAEGRISRRQQAPLSILMLDIDR 496 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGD-KGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 FK IND+YGH GD+ L V A +++I+ LV+R GGEEFA+ +P+ + + +AE Sbjct: 497 FKLINDSYGHLAGDQALRVIADQLKQILKRPTDLVSRFGGEEFAIILPNTDKIGAQQVAE 556 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 IRK + P W + LTVSIGV S +T + L+ +AD LY++K DGRN Sbjct: 557 TIRKVISKLPICWGGNRIRLTVSIGVSS---EIITSEEHTTLLLEQADKALYQAKNDGRN 613 Query: 304 R 304 + Sbjct: 614 Q 614 >UniRef50_Q7MRL2 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MRL2_WOLSU Length = 480 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 83/294 (28%), Positives = 136/294 (46%), Gaps = 30/294 (10%) Query: 21 LTLAIPGVLPRFKAEQMMPAIAL--IVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVT 78 L LA+ G + K E + L I+ V+ S L L + Y ++T Sbjct: 201 LDLALSGRIAVDKRESNRKGLELGEIIEVLVS-----------KLSTLAQAGIHYQDEIT 249 Query: 79 CLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIM--VSFSVAAIN 136 + +E +++ ++ + G I Q + + + F + I Sbjct: 250 ----HIGKTLEEMILDPRSLEKTKGRLIEITQKIDTHIQNLNKEVAEKKSEIEFLQSKIE 305 Query: 137 SLMKQVAL---RADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTVMLLDIDYFKSIND 190 L +++ A D LT V++R L E+L ++ L+ +V DID+FK IND Sbjct: 306 ELTQELCRAQEEASIDSLTGVHTRRFLEESLSRFEALFLRYESRYSVAFFDIDFFKKIND 365 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGHE GD+VL+ F R +++ V + + AR GGEEF V +P +N V+ AE+IR VE Sbjct: 366 KYGHEAGDRVLATFGRLLKQSVRQEDIAARYGGEEFIVILPEMNLVEAWRFAERIRALVE 425 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 F +Q + ++VS G+ + +D L+ AD LY +K+ GRN+ Sbjct: 426 RSVFVYQDMRIKVSVSGGIAER-----SECEDRKALIKFADARLYEAKEGGRNQ 474 >UniRef50_B5JSY0 Response regulator PleD n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSY0_9GAMM Length = 261 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 95/170 (55%), Gaps = 9/170 (5%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGH 194 + KQ+ A+ D LT +Y+R ++ + + H ++++LD+D+FKSIND +GH Sbjct: 77 VQKQLEELANKDALTGLYNRQYFFDHANEWDKRCRENSGHFSLLMLDVDHFKSINDRFGH 136 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD+VL + I+ + + + AR GGEEF +P N +AE+IR G+E Q F Sbjct: 137 PVGDRVLQRVSNVIKGFMRQEDMCARYGGEEFICLLPDTNAAGAKAVAERIRLGMEHQAF 196 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + + L L+VSIG A+ ++ D+ L+ AD LY +K GRNR Sbjct: 197 -LKARGLSLSVSIG-----ATTMSANDNLETLIERADQALYEAKDGGRNR 240 >UniRef50_A6VWF8 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VWF8_MARMS Length = 368 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 88/312 (28%), Positives = 141/312 (45%), Gaps = 33/312 (10%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 F +L++ L + + +AL + V GG S PL W Sbjct: 63 FLVSILLLITFYILKTSSYRHYHNCSRFIAIVALYILCFYLVCAGGVNSSG-PL----WI 117 Query: 70 AVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQM--------FSARLGIATM 121 V P +T F+ I+ A + +S+ F QM F RL + Sbjct: 118 YV--IPSIT--FAFLGLKQGIIANAAFIFIVSIMLFFPNDQMLLTTYSYEFKTRLIYVFL 173 Query: 122 AICPIMVSFSVAAINSLMK------QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL 175 I + + VA S M+ + +A FD+LT + +R G+ + L +Q +H Sbjct: 174 TIVTLSGLYEVARYRSFMRLKTMKDKYEYQAQFDYLTFLPNRRGIQKILNKDQ-RQRKHT 232 Query: 176 ----TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 T+ +LDID FK IND +GHE GD VL +R ++ + + +AR GGEEF + +P Sbjct: 233 HKVSTIAILDIDKFKVINDEFGHEVGDMVLKHTSRVLRDCIRSQDSLARWGGEEFLLLLP 292 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + L++ E IR+ VE PF ++++T+S+G+ DFN+ + +D Sbjct: 293 ETTEQEALVLLESIRECVEETPFGHGNISIFITLSVGLCETSPDV-----DFNETIKFSD 347 Query: 292 TCLYRSKKDGRN 303 LYR+K+ GRN Sbjct: 348 VSLYRAKQAGRN 359 >UniRef50_Q47W79 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47W79_COLP3 Length = 334 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 101/169 (59%), Gaps = 7/169 (4%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHE 195 + ++A + D LTQVY+R ++L+ K +H L++++LD+D+FK +NDNYGH+ Sbjct: 161 LAEIAQISRIDGLTQVYNRRHWQDSLEQEYAKARRHDKKLSLIMLDLDHFKLLNDNYGHQ 220 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD VL + I ++ + R GGEEFA+ +P + + +A++I + + PFT Sbjct: 221 GGDMVLIEVSALISTLLRVEDTFGRYGGEEFAIILPETDSAGAIELAQRICRIIATTPFT 280 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + + + +TVS+GV A + ++ +L+ +AD+ LY++K GRN+ Sbjct: 281 YNDQVIKVTVSLGV----AQLSSKESNYEELITQADSALYQAKSQGRNQ 325 >UniRef50_Q1K1S4 Diguanylate cyclase n=4 Tax=Bacteria RepID=Q1K1S4_DESAC Length = 515 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 102/183 (55%), Gaps = 8/183 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDID 183 M++ + N L++++A + D LT+ Y+ L + S + L+V+++DID Sbjct: 327 MLTAELEKKNKLLERLA---NVDGLTEAYNHRYFQNFLDREINRSERNDYTLSVVMVDID 383 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 FK ND +GH+ GD +L FA + ++ + L AR GGEEF + +P N +G ++AE Sbjct: 384 NFKKFNDLHGHQVGDYILKQFADVARSLLREYDLFARYGGEEFVLVLPETNAQEGEVVAE 443 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 K R + FT +++T Y+T S GV + + D N ++ +AD+ LY SKK GRN Sbjct: 444 KFRSTLSEHTFTHERETYYITASFGVSDISPAKDKI--DKNDVISQADSALYESKKKGRN 501 Query: 304 RTS 306 R + Sbjct: 502 RVT 504 >UniRef50_C4WGI0 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WGI0_9RHIZ Length = 392 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 14/220 (6%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV--AAINSLMKQVALRADF 148 +L A S++ G F+ + + + + AI ++ F++ AA + + +++ D Sbjct: 171 LLTARSLLGEVDGENFAATVFW--QWTVFSTAIAAVLTGFALLAAAGHDRIGELSHERDS 228 Query: 149 DFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT + +R GL Y AL K+ V + DIDYFK++ND+YGH GD VL FA Sbjct: 229 DPLTGLLNRRGLEMRYNALSHT--KRGASGWVAVCDIDYFKALNDDYGHAAGDAVLQEFA 286 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 ++K++G++ L+AR GGEEF + + + + L + E +R+ +E F +T Sbjct: 287 GILRKLLGERSLIARTGGEEFVICLHDMQADNVLELMEGVRRNIETHRFQRLSDETSVTC 346 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 SIG L D + + +AD LY +KKDGRNRT Sbjct: 347 SIGC-----VRLQEQGDLWQAVDKADKVLYAAKKDGRNRT 381 >UniRef50_B2V685 Diguanylate cyclase/phosphodiesterase n=3 Tax=Sulfurihydrogenibium RepID=B2V685_SULSY Length = 800 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 99/159 (62%), Gaps = 5/159 (3%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 A++DFLT+V++R + E ++ +++ ++ +++LD+D FK IND +GH+ GD++L Sbjct: 388 ANYDFLTRVFNRRKMMELIQ-KNIENSKKFAILMLDMDDFKRINDTFGHDLGDEILKEIV 446 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + ++ I + ++ R GGEEF + P + + L +AE IRK + +P + +Y++V Sbjct: 447 KILKNIRRQQDIIGRYGGEEFIILSPDADGKEALNIAEDIRKAISEKPVVVRDNKIYISV 506 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 SIG+ A + + ++L+ AD LY++KK+G+N+ Sbjct: 507 SIGI----AEFPIHGNSPSELLKAADIALYKAKKEGKNK 541 >UniRef50_B9L727 Diguanylate cyclase/phosphodiesterase n=1 Tax=Nautilia profundicola AmH RepID=B9L727_NAUPA Length = 686 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 103/180 (57%), Gaps = 17/180 (9%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKSIN 189 I S ++ +RA+FD LT + +R + LK S++ + V+ +DIDYFK IN Sbjct: 242 KTIQSEKHKLFIRANFDALTGLCNRECFMQKLKDAYYDSIRNNKKFAVLFIDIDYFKQIN 301 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA-----EK 244 D GH+ GDKVL + A ++K V +V+R GG+EF V + ++ ++ +++ E+ Sbjct: 302 DTDGHKVGDKVLKILAERLKKSVRKTDVVSRFGGDEFLVLLKDIHSIEDVIIYTQRILEE 361 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 I+K +E+ K Y+T SIG+ + Y +D +KL++ AD +Y+SK DG++R Sbjct: 362 IKKEIEINS-----KKYYVTGSIGI----SIYPDNGEDLDKLIIYADIAMYQSKNDGKDR 412 >UniRef50_Q1N3P2 Probable two-component response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N3P2_9GAMM Length = 364 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 15/164 (9%) Query: 149 DFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +Y+R AL + + L+++ LD+D+FK INDN+GH GD+VL A Sbjct: 194 DTLTGIYNRQYFDNALDMQWDLASRSENSLSILFLDLDHFKKINDNFGHLAGDQVLCHAA 253 Query: 206 RHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 +I K ++AR GGEEFA+ +P+ D L +AE+IR +E P Q ++LT Sbjct: 254 HLFSEIARRKTDMIARYGGEEFAIILPATEKQDALDLAEQIRHAIENTPCRSDQGLIHLT 313 Query: 265 VSIGVG----SGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 VSIGV S + S +T D +AD LY++K +GRN+ Sbjct: 314 VSIGVNSVVPSPQGSPVTFLD-------QADQALYQAKNNGRNQ 350 >UniRef50_Q1D632 GAF domain/GGDEF domain protein n=2 Tax=Cystobacterineae RepID=Q1D632_MYXXD Length = 710 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 9/175 (5%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYG 193 L +Q+ A D LT +Y+ ++A L Q++ +++L D+D+FKS+ND YG Sbjct: 525 LYEQMERMATTDGLTGLYNHR-TFQAKADEVLAQSRRYQRKFSLILTDVDHFKSVNDTYG 583 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL AR I+ + D +VAR GGEEF + +P + ++E+IR+ V+ + Sbjct: 584 HPTGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETDAKGAFTISERIREAVKAEV 643 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 F + L +T+S+G+ A++ + +L+ AD CLY SK++GRN++ T+ Sbjct: 644 FQTEMGPLRITMSLGI----ATFPDSAMEKQQLIDLADQCLYHSKRNGRNQSVTV 694 >UniRef50_A4XQ87 Diguanylate cyclase n=1 Tax=Pseudomonas mendocina ymp RepID=A4XQ87_PSEMY Length = 375 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 98/168 (58%), Gaps = 7/168 (4%) Query: 141 QVALRADFDFLTQVYSR---SGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECG 197 Q+ L + D LTQ+ +R + L+ +L + +L+Q + L+++LLDID+FK +ND +GH G Sbjct: 205 QLDLLSRTDSLTQLGNRYQFNNLFPSLVANALRQGEPLSLVLLDIDFFKKVNDEHGHAGG 264 Query: 198 DKVLSVFARHIQKIVGDKG-LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 D LS FA ++++ G + R+GGEEF V +P MAE+ R+ +E + Sbjct: 265 DACLSAFAERMRQVFRRDGDALLRLGGEEFGVLLPGTTLAQAREMAERFRQELESEGLQL 324 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + L LT S+GVGS + D F + D+ LYR+K++GRNR Sbjct: 325 ADQCLKLTTSLGVGSFDKRQDSDADAFFR---RVDSALYRAKREGRNR 369 >UniRef50_Q1DC46 FHA domain/GGDEF domain protein n=2 Tax=Myxococcales RepID=Q1DC46_MYXXD Length = 354 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 7/159 (4%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT + ++ E L+ + T++ LT+M+ DID+FK IND +GH GD VL A Sbjct: 197 DGLTGINNKRYFLEYLEKEMGRSTRYQRTLTLMMFDIDHFKQINDVHGHLAGDYVLRELA 256 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + I+++V + AR GGEEFAV +P P L AEKIR+ +E + F + K + +T+ Sbjct: 257 QSIKRLVRREQCFARYGGEEFAVVLPEDGPDKARLFAEKIRRLIEGKSFVYDDKEIPVTI 316 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 SIGV + L T F K+ AD LY++KK GRNR Sbjct: 317 SIGVAEQTSDMLEPT-HFIKV---ADANLYKAKKSGRNR 351 >UniRef50_C1DD63 Sensor protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DD63_LARHH Length = 379 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 24/176 (13%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK 199 Q+ +RA +D LTQ+ +R + E L +Q L V+L DID+FK++ND +GH+ GD Sbjct: 212 NQLEVRATYDPLTQLLNRGAILEGLSQSCCDPSQPLAVILADIDHFKNVNDVHGHQAGDM 271 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 L AR + +++ V R GGEEF + +P P +++AE++R+ V +P Sbjct: 272 ALEAVARRLGRVLRGGDAVGRYGGEEFLIVLPGATPDVAMIVAERLRQAVAGEP------ 325 Query: 260 TLYLTVSIGVGSGRASYLTLT-----------DDFNKLMVEADTCLYRSKKDGRNR 304 + +G GR+ LTL+ D L+ EAD LY +K GRN+ Sbjct: 326 -------VDLGGGRSQSLTLSLGVCCQPGGQAHDVACLIAEADQALYAAKAGGRNQ 374 >UniRef50_Q315M6 Diguanylate cyclase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315M6_DESDG Length = 403 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 97/177 (54%), Gaps = 11/177 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 ++ A+ M+Q A D LT + +R G+Y+ L + T+ +V+L D+D+FK+ Sbjct: 219 TLVALTREMEQCACT---DPLTGLLNRRGIYDRLNEERARATRSGSTFSVILCDVDHFKN 275 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND +GH+CGD VL A H ++ V + +V R GGEEF +P + L +AEK+R Sbjct: 276 VNDCFGHQCGDHVLHQLAEHFRRSVRGQDVVCRWGGEEFLFILPETDEQGALNLAEKLRS 335 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 VE P + + +T+S+GV TLT+ + AD LY +K+ GRN+ Sbjct: 336 TVEQTPVNYHGMPIDITLSLGVQE-----CTLTESTEFHIRVADQKLYIAKEHGRNK 387 >UniRef50_C9YC42 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YC42_9BURK Length = 409 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 90/160 (56%), Gaps = 8/160 (5%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT +++R+ E L + LK+ + T++LLD+D+FK IND +GH GD VL Sbjct: 252 DGLTGLFNRNTFVE-LSTNELKRAKRQGSATTILLLDLDHFKRINDTWGHPAGDVVLRHV 310 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ + V LV R+GGEEF V +P +AEKIR+ +E+ W+ K + +T Sbjct: 311 AQTMVNSVRSTDLVGRLGGEEFIVLLPHTTAEASRKIAEKIRQRLEVSDIRWEGKRIAVT 370 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 SIG+ A + +F+ L EAD LY +K+ GRNR Sbjct: 371 ASIGLSGTTAEE---SREFDSLYTEADKALYLAKQRGRNR 407 >UniRef50_Q89SS4 Bll2326 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89SS4_BRAJA Length = 435 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ--TQHLTVMLLDIDYFKSINDN 191 A+++ +++A +A D+LT + +R +EA L L ++LLD+D FK++ND+ Sbjct: 245 ALHAEKERLAWQASHDWLTGLANRRA-FEARLQGELDNIAAGSLGLILLDLDQFKNVNDS 303 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 GH GD++L +R +Q+ LVAR+GG+EF + +P +P D +AE++R+ +EL Sbjct: 304 CGHLAGDRLLCQVSRLLQQDRRPHDLVARLGGDEFGLILPRCSPFDATDIAERLRRALEL 363 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 F W + +T SIG+ TL D M AD YR+K+ GRNR Sbjct: 364 FSFAWDDRCFAVTASIGITCITDRDTTLED----AMRRADAACYRAKEKGRNR 412 >UniRef50_Q1LIC9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LIC9_RALME Length = 599 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 12/257 (4%) Query: 55 GAGSLAFPL-PALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFS 113 GA ++AF L +IW + Q+ L F I+ +AN + + V SP + Sbjct: 338 GAFAIAFALLGTMIWLHSLFRRQI--LKPFFAATRSILAIANGNLSVRVPSPNNYRGEIR 395 Query: 114 ARL-GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY----EALKSPS 168 A L + T+ + L+ Q+ A+ D LTQ+ +R L + SP+ Sbjct: 396 ALLEAVHTLKRYSLDKQQLEQDRQRLIAQLTTMAETDALTQLLNRRALEARACDLCASPA 455 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + ++ +++ DID+FK IND YGH GD+ L + ++++G L AR GGEEFAV Sbjct: 456 ADKP-YVALVMFDIDHFKRINDTYGHIAGDRALEIVGAVCREVLGTGDLAARFGGEEFAV 514 Query: 229 AVPSVNPVDGLLMAEKIRKGV-ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 P + L +AE++++ + E++ + +TVS+GV GR + D + L+ Sbjct: 515 VSLVSTPGEALRLAEQLKEKLREIRVTLESARPFGMTVSLGVAIGRRE--DVGQDLSALI 572 Query: 288 VEADTCLYRSKKDGRNR 304 +AD LYR+K+ GRNR Sbjct: 573 RQADLMLYRAKRGGRNR 589 >UniRef50_Q02P32 Putative two-component response regulator n=6 Tax=Pseudomonas aeruginosa RepID=Q02P32_PSEAB Length = 525 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 13/192 (6%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSR-SGLYEA-LKSPSLKQTQHLT 176 AT+ C + ++ ++ +++ L A D LT +++R S L++A L + ++ +H Sbjct: 339 ATLIWC-----YDISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPC 393 Query: 177 V-MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 V ++LDID+FK+IND++GH GD+ L A +++ + + L+ R+GGEEFA +P V+ Sbjct: 394 VALMLDIDHFKNINDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSL 453 Query: 236 VDGLLMAEKIRKGVE-LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 L +AE++R GVE L+ + L +TVSIGV R + DD L+V AD+ L Sbjct: 454 DQALDVAERLRAGVEALRVSNPDGEPLRMTVSIGVALRRDA----GDDLESLLVRADSAL 509 Query: 295 YRSKKDGRNRTS 306 Y++K GRNRT Sbjct: 510 YQAKSGGRNRTE 521 >UniRef50_A9DAY4 Periplasmic sensor diguanylate cyclase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DAY4_9RHIZ Length = 442 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 11/142 (7%) Query: 173 QHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPS 232 + T++ +DID+FK +ND +GH GD+VL AR + + D V R+GGEEFAV +P Sbjct: 298 EQFTLLAIDIDHFKQVNDTHGHAAGDEVLRAVARTMMDTMRDGDRVFRVGGEEFAVLLPR 357 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF---NKLMVE 289 + L AE+IR+ VE+ P + + + +TVSIG+ S T DF + L+ Sbjct: 358 TDGAPARLAAERIRQAVEMAPVSLKATEIAVTVSIGMAS--------TLDFPEKSDLLEA 409 Query: 290 ADTCLYRSKKDGRNRTSTMRYG 311 AD LYR+K +GRNR R G Sbjct: 410 ADAALYRAKHEGRNRIIVNRPG 431 >UniRef50_B1Z9Z6 Diguanylate cyclase n=6 Tax=Alphaproteobacteria RepID=B1Z9Z6_METPB Length = 363 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 15/198 (7%) Query: 113 SARLGIATM----AICPIMVSFSVAAINSLMKQVALR--ADFDFLTQVYSRSGLYEALKS 166 SARL I + I I+++ S+ A+ + ALR A D LT +R GL A Sbjct: 171 SARLAIVGIFVVDQISSIVLTTSILALEAERAHAALRRMARTDALTGALNREGLAAAAGG 230 Query: 167 PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEF 226 V++ D+D+FKSIND +GH GD VL F R ++ + L+AR+GGEEF Sbjct: 231 ----DPGPAGVIVADLDHFKSINDRFGHAGGDAVLREFTRRSAGLLPEGALLARLGGEEF 286 Query: 227 AVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKL 286 + +P P +AE++R V P W+ + +TVS+GV RA +L + ++ Sbjct: 287 GIVLPGHAPNATAYLAERLRHAVGATPVPWRDAAIPVTVSVGVAR-RADGESLHEAIDR- 344 Query: 287 MVEADTCLYRSKKDGRNR 304 AD LY +K GRNR Sbjct: 345 ---ADRALYVAKTAGRNR 359 >UniRef50_B2JUD5 Diguanylate cyclase n=4 Tax=Burkholderia RepID=B2JUD5_BURP8 Length = 241 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 8/170 (4%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 + +L +Q+A RA D LT V++RS + E ++ + + +++LDID FK +ND++GH Sbjct: 74 MQALAQQLAHRATHDALTGVFNRSAVIE--RTTKVLRHDSAVMIILDIDEFKRVNDDFGH 131 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD V+ +++IVG++G + R+GGEEF V +P+ P + L AEK+R+ + F Sbjct: 132 PAGDAVIMGIVECLRRIVGERGFIGRVGGEEFTVLLPAHEPAEALRQAEKMREAIGRHVF 191 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +T S GV + DF+ AD LYR+K+ GRNR Sbjct: 192 ASPVDR-RVTASFGVSANPPGT-----DFDTAYGFADAALYRAKRGGRNR 235 >UniRef50_Q1K433 Ammonium transporter n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K433_DESAC Length = 606 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 99/175 (56%), Gaps = 17/175 (9%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT--QHLTVMLLDIDYFKSIN 189 VA+ SL QV FD LT+VY+R G E ++ +QT ++V+++DID+FK+IN Sbjct: 443 VASNKSLQSQVY----FDPLTKVYNRRGALEKIR----RQTPATPMSVIIIDIDHFKTIN 494 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D YGH+ GD VL A IQ+++ ++ L AR GGEEF + + + +AEK+R + Sbjct: 495 DTYGHDVGDVVLKELAELIQQLIRNQDLFARWGGEEFILLCETSILDEARRIAEKLRSSI 554 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 PFT +LT S GV S F+ L +AD LYR+K+ GRNR Sbjct: 555 AAYPFT---TVNHLTCSFGVCSPERP----DQPFDALFKDADEALYRAKELGRNR 602 >UniRef50_Q1MZ89 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=2 Tax=Gammaproteobacteria RepID=Q1MZ89_9GAMM Length = 577 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 62/170 (36%), Positives = 98/170 (57%), Gaps = 10/170 (5%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ----HLTVMLLDIDYFKSINDNYGH 194 + Q L+A D LT + +R G Y+ ++ + L++++ D+D FKSIND YGH Sbjct: 391 LNQSQLKAMTDSLTGLPNR-GAYDVYAQQEYERYKRYGGELSLIVCDVDKFKSINDTYGH 449 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GDKVL + +R ++K + L+AR GGEEF V +P D + +AEKI + V PF Sbjct: 450 QAGDKVLQLISRQVKKGTRETDLLARYGGEEFVVLLPETKQEDAVSVAEKIIEAVATSPF 509 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 ++ K + +T+S GV S + Y ++ AD LYR+K++GRN+ Sbjct: 510 HFRGKRVQITISCGVASFKKGYRP-----EQVFDAADAALYRAKENGRNQ 554 >UniRef50_Q5LPK8 GGDEF domain protein n=1 Tax=Ruegeria pomeroyi RepID=Q5LPK8_SILPO Length = 249 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 I+ L +Q+A D +TQ+Y+R+ L E L+ + + +++ DID+FK IND YGH Sbjct: 65 IDKLNQQLAHLNRIDQMTQLYNRACLLEKLEQ---EPEEAGMILIADIDHFKQINDTYGH 121 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD V+ AR +Q+ +G+ AR GGEEF + VP ++ AE IR+ VE Q Sbjct: 122 DVGDLVIIEVARVLQRSSLPEGIAARFGGEEFVIYVPRLDLEAAEFRAEAIRQAVEAQSV 181 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + L T+SIG+ + ++ ++ AD LYR+K GRN+ R Sbjct: 182 MIDGRKLSCTISIGI-----EIRQMQENVGDVLKRADEALYRAKAQGRNQVVAAR 231 >UniRef50_Q12S41 GGDEF domain n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S41_SHEDO Length = 337 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 6/159 (3%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 A D LTQ Y+R L + +S S T + ++LLD+DYFK IND YGHE GD VL A Sbjct: 176 ALLDPLTQHYNRLALSKRFQSLSQTSTLPMCILLLDLDYFKVINDTYGHEAGDIVLKACA 235 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + I I G R+GGEEF V V + + + +AE IRK + F ++ + L +TV Sbjct: 236 KQISSIAGYSD-TFRVGGEEFCVLVQAEHANQAVELAESIRKLISDTEFLFENQNLAVTV 294 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 S+GV + A +TL++ L+ +AD LY +K GRN+ Sbjct: 295 SVGVATFEAK-MTLSN----LLAKADKQLYLAKDLGRNK 328 >UniRef50_Q085X7 Diguanylate cyclase n=2 Tax=Alteromonadales RepID=Q085X7_SHEFN Length = 357 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 30/229 (13%) Query: 96 SVIDISVGSPFSIPQM------FSARLGIA--TMAICPIMVSFS-VAAINSLMK------ 140 S+I I + SP +PQ F RL ++ T + +S + + NS +K Sbjct: 128 SIIAIIMFSPIEMPQYATYSTEFKVRLILSFLTTTFLSALYEYSRMLSYNSALKLGKKYQ 187 Query: 141 QVALRADFDFLTQVYSRSG---LYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECG 197 Q+AL D LT + +R + + KS + + L+V+L D+D+FK +ND YGH CG Sbjct: 188 QLALS---DPLTTLANRRNALTILQQEKSRISRNNEPLSVLLCDLDHFKMVNDKYGHNCG 244 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL+ ++ ++ V + VAR GGEEF +P + ++AEKIR V + Sbjct: 245 DMVLTELSQVFKQSVRQQDCVARWGGEEFLFILPQTSAEQASVIAEKIRTNVHHHKVHFL 304 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFN--KLMVEADTCLYRSKKDGRNR 304 + + LT+SIG+ LTDD N +L+ AD LY++KK+GRN+ Sbjct: 305 KHEISLTISIGISQ-------LTDDQNIDELINNADRNLYQAKKNGRNQ 346 >UniRef50_A4BD76 GGDEF domain protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BD76_9GAMM Length = 476 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 8/160 (5%) Query: 148 FDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT + +R G L + + + Q L++ ++DID+FK IND +GH GDKVL + Sbjct: 316 LDPLTGLPNRQGFDRRLSAELARAERYDQALSIAIIDIDFFKRINDEFGHLVGDKVLKMM 375 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ ++++ + ++R GGEEF + +P +GL +K+R+ VE +PF +Q + LT Sbjct: 376 AKEMKRVCRESDFLSRFGGEEFVLLLPQTTLEEGLTAVDKLRRHVETRPFHYQNTPVNLT 435 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 VS GV + + + + AD LY SK++GRNR Sbjct: 436 VSAGVAQRQ-----VNETLESWLDRADAALYVSKREGRNR 470 >UniRef50_A6W1T4 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1T4_MARMS Length = 368 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 102/183 (55%), Gaps = 12/183 (6%) Query: 127 MVSFSVAAINSLMKQVA----LRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDI 182 + +S++ N +K+ + L A D LT++ +R G+ + L++ S + ++L D+ Sbjct: 191 IYEYSMSRFNQELKETSAKLKLVAYIDALTELLNRRGMLQRLETSSY---HNFHLLLADV 247 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND YGH+ GD LS A+ IQ + + GL +R GGEEF +AV + + +A Sbjct: 248 DFFKRINDGYGHDAGDYALSQLAKIIQMSIPEGGLASRWGGEEFLIAVCDCSESEAFALA 307 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E IRK VE F + + +T+S G+ + + + + + AD+ LY +K+ GR Sbjct: 308 ESIRKDVEDYEFEYLDQKFRMTLSFGMAT-----MNESTSLREAITIADSRLYGAKRAGR 362 Query: 303 NRT 305 NRT Sbjct: 363 NRT 365 >UniRef50_A1SVZ1 Diguanylate cyclase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SVZ1_PSYIN Length = 477 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 9/183 (4%) Query: 126 IMVSFSV-AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLD 181 I+++F + +N K++ A +D LT + +R E L+ L ++ HL++ D Sbjct: 296 ILIAFLILKTVNKYYKEMEHLAKYDALTNLKNRRAFNEELEHSLLLCKRRASHLSLTFFD 355 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D FKS+ND +GH+ GDKVL A ++ + ++ R GGEEF VA D + Sbjct: 356 LDDFKSVNDTFGHQTGDKVLQYVADILKDDIRQTDIIGRWGGEEFIVAFIDTELEDAKFI 415 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 EKIR +E F Q K + +T S G+ + +T D + L+ AD LY++K++G Sbjct: 416 TEKIRAHIEKDSFLSQLKNMKVTASFGLTT-----ITTQDTLDSLLERADQALYKAKENG 470 Query: 302 RNR 304 +N+ Sbjct: 471 KNQ 473 >UniRef50_A3DHG2 Diguanylate cyclase with GAF sensor n=3 Tax=Clostridium thermocellum RepID=A3DHG2_CLOTH Length = 415 Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 7/193 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT----QHLTVMLLD 181 I V+ V + + Q+ A D LT++Y+R L + L + L+ T Q L+V+++D Sbjct: 226 IEVAKPVISSKRTLHQLRKNATTDKLTKLYNRRFLEQYLDN-QLEITGFSNQKLSVIMMD 284 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID FK IND YGH GD VL FAR I + + LVAR GGEEF +PS + + + Sbjct: 285 IDNFKRINDTYGHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIAILPSSDTKNAYDI 344 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE+IR+ + +P +S G ++Y T + N L+ AD LY++K+ G Sbjct: 345 AERIRESIAAEPMPKINDVQLPNISCSFGV--STYPTHAKNKNDLIKAADIALYKAKQAG 402 Query: 302 RNRTSTMRYGEEV 314 +NR T G E+ Sbjct: 403 KNRVITYSEGMEM 415 >UniRef50_D0LHJ8 Diguanylate cyclase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHJ8_HALO1 Length = 303 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT V+++ E L+ + +H LT+++ DID+FK IND +GH GD VL + Sbjct: 137 DGLTGVHNKRYFVEFLEREIARCARHQRPLTLLMFDIDHFKQINDTHGHLTGDYVLKEMS 196 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 R +++ + + L+AR GGEEFA +P + V G+ E+IR+ V +PF ++ +T+ Sbjct: 197 RRLRERIRKEELLARYGGEEFAAVLPETDHVGGMTFGEQIRQLVGGEPFEYEGDRFQVTI 256 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 S+GV + L D + AD LYR+K+ GRNR M Sbjct: 257 SVGVHTLYGQSL----DVKGFIKHADDNLYRAKRSGRNRVIGM 295 >UniRef50_Q2S9K6 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S9K6_HAHCH Length = 418 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 88/165 (53%), Gaps = 10/165 (6%) Query: 146 ADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A+ D+LT +Y+R L+ A K + + + LT ++D+D+FK IND YGHE GD+ + Sbjct: 257 ANRDYLTGMYNRRYLFSAAKELYRVAKENGEPLTAAMIDVDHFKRINDTYGHEAGDRAIC 316 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 FA+ I + GD L AR GGEEF V P V+ M E R VE + L Sbjct: 317 AFAKMIGETFGDY-LAARFGGEEFCVLFPGVSIEKISPMLESFRHKVEQTAIPFLSDHLR 375 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 LTVSIG L D + L+ AD LY SK +GRNR +T Sbjct: 376 LTVSIGATD------VLGDSLDNLIRRADVLLYESKDNGRNRLTT 414 >UniRef50_A9AYQ2 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYQ2_HERA2 Length = 600 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 104/183 (56%), Gaps = 8/183 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK-SPSLKQT--QHLTVMLLDIDYFKS 187 +A I + Q+A A D LT++ +R GLYE + + +QT Q ++ DID+FK+ Sbjct: 414 QLADIQQINLQLAEWAKTDSLTEILNRRGLYEQIDLALQHQQTDAQGWAWIMFDIDFFKA 473 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND+YGH+ GD+VL A+ + ++ + R GGEEF V +P + + +++AE++R Sbjct: 474 INDSYGHDSGDEVLRGIAQRARLVLRHSDVFGRYGGEEFLVFLPHTSMQEAIVIAERLRT 533 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + P+ +Q + +T+S+G+ ++ DD +L AD LYRSK GRN + Sbjct: 534 AIANTPYVVKQTAVNVTISLGI-----AWTEQVDDPERLTQLADQALYRSKAAGRNCYTI 588 Query: 308 MRY 310 R+ Sbjct: 589 ERF 591 >UniRef50_A6WV43 Diguanylate cyclase n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6WV43_OCHA4 Length = 382 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 14/220 (6%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV--AAINSLMKQVALRADF 148 +L A S++ G F+ + + + + AI ++ F++ AA + +++ D Sbjct: 161 LLTARSLLGDVDGDDFATTVFW--QWTVFSTAIAAVVTGFALLAAAGYDRIGELSHERDS 218 Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQHLT---VMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT + +R GL ++ +L QT+ V + DIDYFK++ND YGH GD VL FA Sbjct: 219 DPLTGLLNRRGL--EMRYDALSQTKKGVPGWVAVCDIDYFKALNDAYGHAAGDAVLKEFA 276 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 ++K++G++ L+AR GGEEF + V ++ + + E +R+ +E F K +T Sbjct: 277 GILRKLIGERPLIARTGGEEFVICVDDMHADNVFQLMEGVRQNIERHRFQRLAKEASVTC 336 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 SIG L DF + + +AD LY +KK+GRNRT Sbjct: 337 SIG-----CVRLPEQGDFWQAVDKADKILYAAKKEGRNRT 371 >UniRef50_A1SY47 Diguanylate cyclase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SY47_PSYIN Length = 794 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 64/172 (37%), Positives = 99/172 (57%), Gaps = 15/172 (8%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSL----KQTQH-LTVMLLDIDYFKSINDNY 192 L++ VA + D LT +++R L+E SP L ++TQ L+++L+D+D+FK IND Y Sbjct: 629 LLQDVAFK---DNLTSIFNRHYLFEI--SPMLLTVSEETQTPLSLLLIDVDHFKKINDTY 683 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH GD +L ++IQ I+ + R GGEEF + +P N + +++AEK+R VE Sbjct: 684 GHLTGDNILKFIVKNIQAILRADDIFVRFGGEEFIILLPKANLEESVMVAEKLRLSVEQN 743 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + + +TVSIG AS T+ KL+ AD LY +K+ GRN+ Sbjct: 744 NYHKNGMDISITVSIG-----ASQYQHTETLEKLISRADLALYSAKEKGRNQ 790 >UniRef50_A3J836 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Marinobacter sp. ELB17 RepID=A3J836_9ALTE Length = 588 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 94/167 (56%), Gaps = 7/167 (4%) Query: 146 ADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R G E+L S ++ +++ V ++DID FK+IND YGH GDKVL Sbjct: 413 AQTDLLTGLSNRRGFLPVAESLWSLVTRKNRNVCVAMIDIDRFKNINDQYGHAVGDKVLK 472 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 V A + + L+AR GGEEF + +P + + L +AE+ R +E + + + Sbjct: 473 VIADELYRSRRRGDLLARWGGEEFTLLLPETSEAEALKVAERFRHNIEQLVTNDRGRVIQ 532 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 T+SIGV S + ++TL ++ + AD LYR+K GRN+ S R Sbjct: 533 CTISIGVTSRHSEHVTL----DQAIARADEELYRAKLQGRNQVSFGR 575 >UniRef50_A3Y5H4 Diguanylate cyclase (GGDEF domain) n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5H4_9GAMM Length = 419 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 94/169 (55%), Gaps = 16/169 (9%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQ----TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT +Y+R +EA LKQ L+++L D+D+FK +ND YGH+ GD VL++ Sbjct: 235 DKLTNIYNRRS-FEARLLQDLKQYDKFQTELSIILFDVDHFKFVNDTYGHQAGDSVLTLL 293 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A Q+ V +VAR GGEEF + +P+ ++AEK+R +E F Q + +T Sbjct: 294 AEIAQQTVRSNDIVARYGGEEFIILLPNTGKNGSQVIAEKLRSAIENAAFDTQSYKIQIT 353 Query: 265 VSIGVGSGRASYLTLTD----DFNKLMVEADTCLYRSKKDGRNRTSTMR 309 +S+GV ++D + + L+ AD LY +K +GRN+ S M+ Sbjct: 354 ISLGVA-------CISDVQHPNLDNLIKSADDALYYAKHNGRNQVSYMQ 395 >UniRef50_A6X7T2 Diguanylate cyclase n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6X7T2_OCHA4 Length = 231 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 19/208 (9%) Query: 108 IPQMF----SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE- 162 + QM+ S R GIA M++ P++V+ AA + ++ A FD LT + SRS E Sbjct: 21 LSQMYEFQPSLRFGIALMSLGPLLVATINAARQKELSDLSRAAYFDVLTGLLSRSAFRER 80 Query: 163 --ALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L S+ + LT M+LDID+FK IND GH GDKVL FA+ ++ + + L R Sbjct: 81 GQKLLRESIVAGRDLTAMMLDIDHFKQINDQNGHASGDKVLIDFAQLVRDQLREGDLFGR 140 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTL 279 +GGEEFA+ +P+ + +A ++R V+ FT + L +TVS+G+ + + Sbjct: 141 LGGEEFAILLPNTSSRQAEKIASRVRLRVQNATFTGTDNQPLKVTVSMGL-------VDI 193 Query: 280 TD----DFNKLMVEADTCLYRSKKDGRN 303 D ++L+ AD +Y +K GRN Sbjct: 194 ADCPSTKLDELLHCADQSMYAAKSSGRN 221 >UniRef50_Q2SNU2 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNU2_HAHCH Length = 367 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 8/158 (5%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LTQ+ +R + + L+ + +H +V+LLDID+FK IND YGH+ GD VL + Sbjct: 199 DELTQLPNRRDMQQQLEKEYFRYKRHGSHFSVILLDIDHFKMINDTYGHDAGDFVLMKIS 258 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + + AR GGEEF + +P + V L +AE++RK +E P ++ + + T+ Sbjct: 259 ELLVNACRKMDMAARWGGEEFLIQLPDTSLVQALTLAERLRKSIEASPLQYKNQEIRYTI 318 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 S GV S ++ D L+ +AD LY++K GRN Sbjct: 319 SCGVCS-----ISQAKDLASLLKQADVNLYQAKIKGRN 351 >UniRef50_Q2IXE2 Response regulator receiver modulated diguanylate cyclase n=6 Tax=Alphaproteobacteria RepID=Q2IXE2_RHOP2 Length = 457 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 95/161 (59%), Gaps = 9/161 (5%) Query: 149 DFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +++R + L + + + + + L +M+LDID+FK+IND YGH+ GD VL FA Sbjct: 295 DGLTGLHNRRYMESHLATLAEQAGSRGKPLALMILDIDFFKAINDTYGHDAGDDVLREFA 354 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ--KTLYL 263 I+K + L R GGEEF + +P + ++AE++R+ + +PF ++ K + + Sbjct: 355 VRIKKSIRGIDLACRYGGEEFVIVMPETDLQVAQMVAERLRRAIAGEPFAIEKGTKRIAV 414 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 T+SIG+ + + D L+ ADT LYR+K DGRNR Sbjct: 415 TISIGLSTLERKGEAVRD----LLKRADTALYRAKHDGRNR 451 >UniRef50_Q07MN8 Diguanylate cyclase n=10 Tax=Bradyrhizobiaceae RepID=Q07MN8_RHOP5 Length = 418 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/299 (31%), Positives = 139/299 (46%), Gaps = 49/299 (16%) Query: 13 GVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVR 72 G++ + +LT A G R ++ PAI I ++ GG L L L+ + Sbjct: 123 GIVAIYAVLTAAELGSERRKSMQRRWPAI------IVPLLHGGVLMLPILLSDLLTPPAQ 176 Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV 132 T L+ F AVE+VL A VG+ F+I + S R Sbjct: 177 TTAGNVWLMVF---AVELVLYA-------VGTVFAIFMLVSERT---------------- 210 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT---QHLTVMLLDIDYFKSIN 189 ++ A D LT +++R G EA ++ + +TVM+ DIDYFKSIN Sbjct: 211 ------VRAHKTAASIDPLTGLFNRRGFTEATTRMIEREAAAGRPVTVMIFDIDYFKSIN 264 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP-SVNPVDGLLMAEKIRKG 248 D +GH GD++L +FA I + L R+GGEEFA +P S++ + L+ AE++R Sbjct: 265 DRFGHPAGDELLKLFATLITSSLRITDLSGRIGGEEFAALLPCSID--EALVAAERVRWS 322 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 E + TVSIGV G A + + L+ ADT LY++K+ GRNR T Sbjct: 323 FETCGIVVDNDPVATTVSIGVAGGPAR-----TELDVLLAAADTALYQAKRGGRNRVET 376 >UniRef50_A8FU11 Diguanylate cyclase n=9 Tax=Shewanella RepID=A8FU11_SHESH Length = 420 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 15/175 (8%) Query: 137 SLMKQVALRADFDFLTQVYSRS---GLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYG 193 +++++ +A+ D+LT VY+R YE L ++ LT+ LLDID FK +ND YG Sbjct: 244 DMIRKLWDQANLDYLTGVYNRRYFFSQYEELIILKKQKRGALTLALLDIDLFKGVNDTYG 303 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H+ GD+VL FA +++ G V+R GGEEF VA +N V + +K R +E +P Sbjct: 304 HDVGDEVLVEFAARLKRSFGQHFTVSRFGGEEFIVAFRGLNEVKSFALMDKFRSQLESKP 363 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDD-----FNKLMVEADTCLYRSKKDGRN 303 + + L +TVS G+ S L+DD + L+ AD LY +K+ GRN Sbjct: 364 ISTSRGELSVTVSAGIAS-------LSDDESEESLDTLIQRADKALYDAKEAGRN 411 >UniRef50_A6TMF8 Diguanylate cyclase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TMF8_ALKMQ Length = 512 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 24/218 (11%) Query: 90 IVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFD 149 ++ + N+ +I G Q+ + LG+ I + + +RA +D Sbjct: 309 VLYLDNAAYEIFSGEQIRFLQIIARHLGLVISKI-------------DYIANLRIRAKYD 355 Query: 150 FLTQVYSR---SGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAR 206 LT +++R +YEA + + ++++DID FK +ND YGH GD+VL AR Sbjct: 356 GLTGLFNRHTFDTIYEAFYNGIKHEKMDFAILMVDIDNFKEVNDQYGHPVGDEVLRKMAR 415 Query: 207 HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVS 266 +Q+ + D ++AR GGEE + + NP + +AE+IRK +E + + + + +TVS Sbjct: 416 AMQQSLRDHDVIARYGGEEMIIILKGSNPPEAKGIAERIRKSIE----SLEIQGIRITVS 471 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 IG+ + R Y + D +L+ AD CLY +K+ G+N+ Sbjct: 472 IGMANFR--YDSYEKD--ELITIADKCLYEAKRKGKNQ 505 >UniRef50_A1VA66 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=Desulfovibrio vulgaris RepID=A1VA66_DESVV Length = 827 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 7/161 (4%) Query: 149 DFLTQVYSRSGLY-EALK--SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT V +R + +A + + +L+ L V++LDID+FK++ND YGH+ GD+VL FA Sbjct: 651 DPLTGVRNRRQFFVDANREFARALRHDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFA 710 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + + + R+GGEEFA +P+ +P + + AE++RK VE + ++ L TV Sbjct: 711 ACCVEALRAYDVFGRLGGEEFAALLPAASPEEAMETAERLRKRVERRSVVYEGTALQCTV 770 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 S+GV S A+ L F+ ++ AD LY +K GRNR+ Sbjct: 771 SVGVTSLAAADLG----FDDMLRRADRALYAAKDHGRNRSE 807 >UniRef50_Q2BLA2 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BLA2_9GAMM Length = 811 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/172 (33%), Positives = 101/172 (58%), Gaps = 5/172 (2%) Query: 146 ADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R L++ + + + L++ +LD+D+FK IND+ GH GD VL Sbjct: 641 ATTDELTSLANRRKFLTTLEAELARAKRYHRELSLCMLDLDHFKRINDDNGHSAGDSVLV 700 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A+ ++ ++ + + R+GGEEFA+ +P + D L++AE++R+ +E +Q TL Sbjct: 701 EVAKIMEAMLRESDMAGRIGGEEFAILLPDTSEDDALILAERLREAIESLEIKYQAHTLK 760 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 LT SIGV S + + ++L+ AD C+Y +K++GRN S +R +++ Sbjct: 761 LTTSIGVAS--LNQMPEIVQASELLSAADDCMYYAKQNGRNLVSNVRTTQQL 810 >UniRef50_B0TH60 Ggdef domain protein, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH60_HELMI Length = 414 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/164 (39%), Positives = 95/164 (57%), Gaps = 9/164 (5%) Query: 143 ALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A +A D LT +Y+ + L+ L + + +T++L DID+FK ND YGH CGD++L Sbjct: 244 ARQAVTDGLTGLYNHRYFQQCLQE--LMKERPVTLLLFDIDHFKGFNDTYGHPCGDEILR 301 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A ++ +G + + AR GGEEFAV +P + G+ AE+IR+ V F +TL Sbjct: 302 QIAHILRSQLGPQEVAARYGGEEFAVILPDADLRRGIERAEQIRQAVANFCFRNPDRTLC 361 Query: 263 L--TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 L TVSIGV A + D ++L+ AD LYR+K+ GRNR Sbjct: 362 LNITVSIGVSEKLAGW-----DKSRLIEAADRALYRAKEQGRNR 400 >UniRef50_C8Q7A8 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b RepID=C8Q7A8_9ENTR Length = 389 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 143/300 (47%), Gaps = 39/300 (13%) Query: 21 LTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCA-----VRYTP 75 L AI + P F MP L+V ++ + G L L+W A V + P Sbjct: 100 LLWAILCIFPAFYFS--MPKRVLVVCLLCIIYTGA-------LIQLLWRARASLTVTFWP 150 Query: 76 -QVTCLLTFVTGAVEIVL---VANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFS 131 Q+ + + I L VA V GS FS+ + + L + I ++F+ Sbjct: 151 AQMLLWIHLLFHVARIFLDDAVATPVHGAIGGSSFSVYVILESILFV-------IGLTFT 203 Query: 132 VAAINSLMKQVA--LRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFK 186 + A+ + Q+A L + D LT V++R L+ E + + L+Q T +L D+D+FK Sbjct: 204 ILAMVNERTQIAHKLASLHDPLTSVWNRRALFAQAEKIIARRLRQQLPFTAVLFDLDHFK 263 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 SIND YGH+ GD+VL F + Q ++ ++G AR+GGEEFA +P + ++ E+IR Sbjct: 264 SINDRYGHQQGDRVLIDFCQIAQSLLPEEGQFARLGGEEFAAILPG-DSEQAQMVCERIR 322 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +L + TVSIG + L F L+ AD LYR+K GRNRT Sbjct: 323 VATQLS----LPDNISYTVSIGYATSSQEDL----HFPTLLALADEALYRAKASGRNRTE 374 >UniRef50_A8UUF5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUF5_9AQUI Length = 283 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 12/177 (6%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDN 191 I+ L++++ AD D LT Y+R + E L + ++ L+V+ +D+D FK +ND Sbjct: 116 ISDLIRELRFLADTDSLTGFYNRRKIEEILAKEIERSRRYGNPLSVLFIDVDNFKELNDT 175 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GD+VL A I+ + V R GGEEF V +P + L +AE+IRK VE Sbjct: 176 YGHKSGDEVLRKIAEIIKSELRRTDYVGRFGGEEFMVILPETDSQSALRVAERIRKRVER 235 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + F KT +TVS+GV + L DD N L D +Y +K+ G+NR+ + Sbjct: 236 EDF----KTGKVTVSVGV-----TELKEGDDLNTLFNRVDRAMYLAKERGKNRSELL 283 >UniRef50_P54595 Uncharacterized protein yhcK n=2 Tax=Bacillus subtilis group RepID=YHCK_BACSU Length = 359 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 7/171 (4%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKS--PSLKQTQHLTVML--LDIDYFKSINDNYG 193 L KQ +A FDFLT VY+R E K+ T H L +DID+FK+IND YG Sbjct: 184 LFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAADTPHFQFALIYMDIDHFKTINDQYG 243 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL +++ + + AR+GGEEFAV +P+ + +AE+IR V P Sbjct: 244 HHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAVLLPNCSLDKAARIAERIRSTVSDAP 303 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +S+ + G A Y T+ L + AD LY++K+ GRNR Sbjct: 304 IVLTNGD---ELSVTISLGAAHYPNNTEQPGSLPILADQMLYKAKETGRNR 351 >UniRef50_A8FZ07 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8FZ07_SHESH Length = 298 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 12/280 (4%) Query: 44 IVSVIAS-VVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV 102 I+ V+ S +VI GA LA + A +W VR P ++ + I++ + + Sbjct: 4 ILPVLGSGLVISGALLLAMAI-APVWKIVRQLPTGGLRYSWGFLILLILIFIAGYVIYAK 62 Query: 103 GSPFSIPQMFSARLGIATMA---ICPIMVSFSVAAINSLMKQVALRAD--FDFLTQVYSR 157 SP Q+F + I ++ S S+ +M+ AL+ + D L +++R Sbjct: 63 FSPVQFSQLFDLVVPIIFFGGAIFVFVVCSLSLRTTRDIMQNYALKQENITDSLMGIFNR 122 Query: 158 SGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGD 214 L LK + L +Q L++ L+DID+FK +NDNYGH+ GD VL A+ I+ + + Sbjct: 123 RYLDRRLKDETERALNYSQPLSIFLIDIDHFKQVNDNYGHQVGDLVLKNIAQLIKHSLRE 182 Query: 215 KGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSG 272 ++AR GGEEF V +P +AE++R VE T +++ L++S+ V G Sbjct: 183 SDVLARFGGEEFVVILPRTKDSTSYTLAERLRHVVEDFQLTLPEESDKDSLSISVTVSIG 242 Query: 273 RASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 A D L+ AD LY++K++GRN+ T + G+ Sbjct: 243 VAGLNAQCKDCQCLIENADRALYQAKRNGRNQVITSKSGK 282 >UniRef50_Q3A271 Sensor histidine kinase/FOG: GGDEF domain protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A271_PELCD Length = 422 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 7/161 (4%) Query: 146 ADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R +E L++ + H ++++LDID+FK IND YGHE GD+ L Sbjct: 257 ARLDPLTGLSNRRAFFEYGLLLENQIARHHHHFSIIMLDIDHFKKINDCYGHEMGDEALK 316 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A H+ IV ++ R+GGEEFA+ +P + + +M+E+++ + + ++ + Sbjct: 317 TLAEHLNAIVRSSDILGRLGGEEFAIIMPHASSEEAAIMSERLKTAISKIVLSDNEQRIR 376 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 TVS G+ + F +++ AD LY++K +GRN Sbjct: 377 FTVSFGIAECNEKITS----FQQVLNNADKALYQAKNEGRN 413 >UniRef50_A6CY69 Putative GGDEF family protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CY69_9VIBR Length = 244 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 6/175 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 +++ + L ++ +++ D LTQ+ +R + L + + T H ++L+DIDYFK +ND Sbjct: 72 NISKRHRLELKLRKQSESDPLTQIANRRYFFSTLATITKSTTPHC-LLLMDIDYFKKVND 130 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD L IQ I+ AR+GGEEFA+ +P + +AE+IR + Sbjct: 131 TYGHLAGDNTLKEVVARIQDIIRPDDTFARVGGEEFALLLPDIEEHTAYEIAERIRCTIA 190 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 PF ++Q+T +T+S+G+ R + N + AD LY +K GRN++ Sbjct: 191 DTPFHYEQQTFSITLSVGITQAR-----YQERNNHIFSRADDALYIAKSRGRNQS 240 >UniRef50_C6BW86 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BW86_DESAD Length = 555 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 51/137 (37%), Positives = 79/137 (57%) Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 +++ Q ++M++DID+FK IND YGH GD VL ++ Q++V ++AR GGEEF Sbjct: 401 AIRAGQPCSLMIMDIDHFKVINDTYGHTVGDIVLQQISKAFQEVVRSSDIIARYGGEEFV 460 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 V P + G +AE++R+ VE + F ++ L T+SIGV D + ++ Sbjct: 461 VVAPGSDIDSGRTLAERLRQSVEARIFNNDEQPLTCTISIGVSHYATDIKFGVDAYEDML 520 Query: 288 VEADTCLYRSKKDGRNR 304 AD LY++K GRNR Sbjct: 521 ARADNALYKAKDTGRNR 537 >UniRef50_UPI000185121C diguanylate cyclase n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI000185121C Length = 466 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 9/178 (5%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKS 187 + + +L Q+ A +D LT +Y+R ++ + S +Q T++L+DIDYFK Sbjct: 282 DMTEVKNLQSQLEHFAYYDELTGIYNRRAFFQYCEEAFQESKEQDTPFTIILMDIDYFKK 341 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH GD+VL A+ Q + L AR GGEEF + V +G +AE++R Sbjct: 342 VNDTYGHSVGDQVLEQVAKVCQSQLHGHELFARYGGEEFVLGVKGYTEEEGAALAEQLRS 401 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD-FNKLMVEADTCLYRSKKDGRNR 304 VE + +T+S+GV + LT D+ +++ AD LYR+K+ GRNR Sbjct: 402 EVEALTIHTPDGKITVTLSLGVAA-----LTKEDEALYQILNHADQALYRAKEAGRNR 454 >UniRef50_Q2JA03 Diguanylate cyclase (GGDEF domain) n=1 Tax=Frankia sp. CcI3 RepID=Q2JA03_FRASC Length = 587 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 10/174 (5%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 L ++ AD D LT + +R +E AL L + L ++DID+FK +ND +GH Sbjct: 417 LFEETQRLADSDPLTGLANRRHFFEQADALVRGHLHAARSLAAFMIDIDHFKQVNDGHGH 476 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD VL+ AR +Q +G + +V R+GGEEFA + G+L AE++R+ + P Sbjct: 477 AVGDAVLAEVARRVQGTLGPQDIVGRIGGEEFAAVLGCPAATAGVL-AERLRQAIGASPV 535 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDD-FNKLMVEADTCLYRSKKDGRNRTST 307 L +TVS+GV + L D L++ AD LY++K+ GR+R +T Sbjct: 536 ATADGPLPVTVSVGV-----AMLNPDDSGLGDLLIRADVALYQAKRSGRDRVAT 584 >UniRef50_Q9RRJ2 GGDEF family protein n=1 Tax=Deinococcus radiodurans RepID=Q9RRJ2_DEIRA Length = 356 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 12/161 (7%) Query: 146 ADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT V R+ L L+ + + L+V+L DID+FK +ND +GH GD VL Sbjct: 202 ARLDALTGVAGRAALESELQRALDTARRTNSPLSVILADIDHFKQVNDVHGHGAGDDVLR 261 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 FA+ +++ VG G+V R GGEEF +P V D L +AE++R+ V + L Sbjct: 262 AFAKRLRRNVGGAGMVGRWGGEEFMAVLPGVARDDALALAERLRQAVS----DTEIAGLP 317 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +T S GV + R DD N+L AD LY +K GRN Sbjct: 318 VTASFGVAALRPD-----DDLNQLFSRADERLYDAKNGGRN 353 >UniRef50_A1RG31 Diguanylate cyclase n=3 Tax=Shewanella RepID=A1RG31_SHESW Length = 362 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 114/200 (57%), Gaps = 12/200 (6%) Query: 110 QMFSARLGIATMAICPIMVSFSVAAINSLMKQV-ALR--ADFDFLTQVYSR---SGLYEA 163 +M S I + C ++ S A +M + ALR A+ D LT + +R + L + Sbjct: 161 EMISLFRHINVLGACALLAGVSYAYSQIVMSAITALRNVANTDELTGLINRRSLTALIDR 220 Query: 164 LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 + +L+ ++++L DIDYFK IND+YGH GD VL A +Q ++ + +VAR GG Sbjct: 221 EAARTLRTHASMSLVLCDIDYFKRINDSYGHAAGDHVLVNVANLLQGVLREYDVVARWGG 280 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF 283 EEF + +P+ + ++ + +AE++R+ V +++++T+ +T+++GV + +++ Sbjct: 281 EEFLLLLPNTDIIEAMKVAERLREIVACSHLSFEEQTIPVTMTLGVA------VLGDENW 334 Query: 284 NKLMVEADTCLYRSKKDGRN 303 + + AD LYR K+ GRN Sbjct: 335 HSTLARADEALYRGKRQGRN 354 >UniRef50_Q7CXW5 GGDEF family protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CXW5_AGRT5 Length = 269 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 25/243 (10%) Query: 71 VRYTPQVTCLLTFV-----TGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICP 125 + ++ ++ CL+T + TG + ++ V D+ G M S LG A Sbjct: 29 LEFSVRIACLVTLIVIVMCTGGLTLLAQFGLVTDLFNGI------MLSVTLGGAVAFTVT 82 Query: 126 IMVSFSVAAINSLMKQVALR----ADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLD 181 ++V + A ++ Q R + D LT + +R GLY A V LD Sbjct: 83 LLVCWLNAREVQILVQSHERFLHLSHTDALTGLSNRLGLYAACAELG----SDYCVAFLD 138 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK++ND Y H GD V++ AR I++ VAR+GGEEF V V +P+ L M Sbjct: 139 IDHFKAVNDGYSHLVGDLVIASVARRIKEHFDPPAHVARLGGEEF-VVVQETSPLAFLQM 197 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 E++R +E P +Q + +T+SIGV ++ + F+K+M AD LYR+K G Sbjct: 198 CERVRAAIETTPVAYQDLRITVTISIGV-----AFRGDAEIFDKVMHNADLALYRAKGGG 252 Query: 302 RNR 304 RNR Sbjct: 253 RNR 255 >UniRef50_B5ZEJ8 Diguanylate cyclase n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZEJ8_GLUDA Length = 390 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 12/164 (7%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQT--QHLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 A DFLT + +R Y+A + QT Q +++++ DID+FKSIND +GH GD VL + Sbjct: 221 AQTDFLTNIGNRHFFYQAGQKCLSGQTVGQPVSLLIFDIDHFKSINDIHGHAMGDAVLKL 280 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK---GVELQPFTWQQKT 260 FAR + + VG + ++ R+GGEEFA+ +P + + I + + Q F + Sbjct: 281 FARAMGEEVGQEAIMGRLGGEEFAMLLPGSDRATARAAGQNIARRFTALAAQDF---RPP 337 Query: 261 LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 L++TVSIG+ R S +TL D L+ AD LY++K GRNR Sbjct: 338 LHVTVSIGLTEVRTSRITLDD----LLAAADGALYQAKTLGRNR 377 >UniRef50_B9ZP75 Diguanylate cyclase n=3 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZP75_9GAMM Length = 380 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 92/174 (52%), Gaps = 6/174 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 S +A + +Q+ A +D LT++ +R G EA+ ++ + + +LD+D+FKS+ND Sbjct: 174 SYSATLNTHEQLRTDARYDALTKLLNRRGFEEAMAGLPPERFP-VVLAILDLDHFKSVND 232 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 +GHE GD L FARH++ V L+ R GGEEF + + P + L + + IR G Sbjct: 233 EHGHEAGDHALRAFARHLRPCVRGGDLLCRWGGEEFLLLITEAGPDEALAVVDDIRIGFA 292 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + L LT S G+ S L F + +VEAD LYR+K GRN Sbjct: 293 RTVLPVGENGLKLTFSAGL-----SCLQNAGGFEQALVEADESLYRAKDRGRNH 341 >UniRef50_A8FBD0 ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Bacillus pumilus RepID=A8FBD0_BACP2 Length = 361 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 95/175 (54%), Gaps = 9/175 (5%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQ-TQHLTVMLLDIDYFKSINDNY 192 L+ +A +DFLT V ++ E L S K T ++++ LDIDYFKSIND Y Sbjct: 183 QLLNLYKFQAHYDFLTGVLNKRKFDEVLNDAFSMKFKHPTHQMSLIYLDIDYFKSINDQY 242 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH GD VL + + K + R+GGEEFAV +P+ +AE++R+ + Q Sbjct: 243 GHHEGDMVLKEIGKRLIKNTRSSDYIGRIGGEEFAVFLPNCTVEKTWQIAERLRRKIADQ 302 Query: 253 PFTWQQ-KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 P Q ++++TVS+G A Y + D +L + AD LY++K+ GRN+ S Sbjct: 303 PVYLQNGMSIHITVSLGC----AYYSGTSPDIKQLPIIADQELYKAKQSGRNQVS 353 >UniRef50_C1DCL4 Diguanylate cyclase n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DCL4_LARHH Length = 347 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/173 (34%), Positives = 101/173 (58%), Gaps = 14/173 (8%) Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDN 191 N+ ++Q+A+ +D LT VYSR G++ L S +L T+ L+ ++LDID+FK +ND Sbjct: 171 NAQLRQMAM---YDSLTGVYSR-GVFFELASEALALTRQECAPLSALMLDIDFFKKVNDT 226 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 +GH GD+VL + R +++ + ++ R GGEEFAV +P +A+++ + Sbjct: 227 WGHAAGDQVLRLAGRRLREQLRGSDIIGRCGGEEFAVILPRQQADRACAVAQQLCDAMCT 286 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDD-FNKLMVEADTCLYRSKKDGRN 303 +PF W+ + + ++SIGV L+ D+ KL+ AD L ++K DGRN Sbjct: 287 RPFPWEGQQIACSISIGVAE-----LSREDESIEKLLHRADLALLQAKGDGRN 334 >UniRef50_Q15V65 Diguanylate cyclase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V65_PSEA6 Length = 370 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 14/201 (6%) Query: 112 FSARLGIATMAICPIMVSF------SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK 165 FS+RL + + + + V + S + L ++ +A D L+ + +R G+ E L+ Sbjct: 169 FSSRLIYSFITVSLLFVFYEYSRQRSFKTLQELSREFEKQARLDPLSGLQNRRGMLEKLE 228 Query: 166 ---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMG 222 +L+ ++LT+M+ DID+FK +ND +GH+ GD V++ + K + + VAR G Sbjct: 229 YEHQRTLRHHKNLTLMMCDIDHFKRVNDKFGHDVGDGVITQVGQLFDKALRKQDTVARWG 288 Query: 223 GEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD 282 GEEF +P +AEK+R V Q + + +TVS+G+ + D+ Sbjct: 289 GEEFLFLLPETTQEQAFTLAEKLRAQVSKQQYQAGSDSFTVTVSLGIYQ-----MHPQDN 343 Query: 283 FNKLMVEADTCLYRSKKDGRN 303 + + ADT LYR+K +GRN Sbjct: 344 LDHAISRADTNLYRAKSNGRN 364 >UniRef50_B0UJW4 Diguanylate cyclase n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UJW4_METS4 Length = 386 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 14/167 (8%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 ++A A D LT + +R GL + + + ++L DID+FK+IND +GHE GD V Sbjct: 212 RLAHLAGTDPLTGLANRRGLSQLAHG----RARPAAILLADIDHFKAINDGHGHEGGDAV 267 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L FAR ++ + + + AR GGEEF V + +P +AE++R E PF Q Sbjct: 268 LVEFARRLRGSLRARDIAARWGGEEFLVVLHGADPAMAEALAERVRAATEAHPFRVGQDP 327 Query: 261 LYLTVSIGVGSGRASYLTLTDDFNKL---MVEADTCLYRSKKDGRNR 304 + +TVSIGV L +D + + + AD LY +K DGRNR Sbjct: 328 IRVTVSIGVA-------ILREDEHGIEPALQRADAALYAAKSDGRNR 367 >UniRef50_A4TZG0 GGDEF n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZG0_9PROT Length = 392 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 93/165 (56%), Gaps = 13/165 (7%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQH-----LTVMLLDIDYFKSINDNYGHECGDKV 200 A D LT+V +R + K+ L Q+ +V++LD+D FK+IND +GH GD+V Sbjct: 227 ASVDPLTEVLNRRSFFA--KAQGLWQSHQSDGRPFSVLMLDLDRFKAINDRHGHPTGDRV 284 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE-LQPFTWQQK 259 + FAR ++ + L+ RMGGEEFA+ +P V L +AE+IR E ++ + Sbjct: 285 IVAFARLLRDAMRHDDLLGRMGGEEFAIILPGVATAQALEVAERIRAASEAVEVLSDDGF 344 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + LTVSIG+ G + T DD LM AD LY++K GRNR Sbjct: 345 RVRLTVSIGLALGDGA--TSLDD---LMKRADAALYQAKDQGRNR 384 >UniRef50_Q6AL41 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AL41_DESPS Length = 516 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/170 (33%), Positives = 94/170 (55%), Gaps = 8/170 (4%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHEC 196 +Q+ A+ D LT Y+ AL S S + + +++++ DID FK ND+YGH+ Sbjct: 337 RQLETLANIDGLTNCYNHRYFQNALDQELSRSSRNSLAISLIMFDIDNFKRFNDSYGHQA 396 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD +L R IQ+ + ++AR GGEEF + +P D L++AEK+R E F Sbjct: 397 GDFILCELTRLIQEQIRKDDVLARYGGEEFVIILPETEKEDALIVAEKVRHACEEHSFQN 456 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNK--LMVEADTCLYRSKKDGRNR 304 KT +T+S+GV + ++ ++ NK + + D LY +K++GRN+ Sbjct: 457 IHKTHQITISLGVATEHSAQIS---PLNKTSFIDKTDLALYSAKENGRNK 503 >UniRef50_Q0KEL5 Putative uncharacterized protein h16_A0406 n=2 Tax=Cupriavidus RepID=Q0KEL5_RALEH Length = 390 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 8/159 (5%) Query: 147 DFDFLTQVYSRSGLYEALKSPSLK--QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D D LTQ+++R L EAL + + Q + L+V+L D+D+FK INDNYGH GD VL+ Sbjct: 224 DTDPLTQLHTRRSL-EALAAREIPPPQGKPLSVLLCDLDFFKFINDNYGHSAGDAVLAQI 282 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 R I + + + AR+GGEEF V +P P L +AE++R+ +E +T Sbjct: 283 GRIIAAGIRRRDIAARLGGEEFVVLLPDTPPDAALHLAERLRQTLESTEMDVLPGMHTVT 342 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 S GV + R +D L++ AD LY +K GRN Sbjct: 343 ASFGVATLRPG-----EDLEALLMRADNVLYAAKNKGRN 376 >UniRef50_A0YPS9 Putative uncharacterized protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YPS9_9CYAN Length = 965 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 89/161 (55%), Gaps = 5/161 (3%) Query: 147 DFDFLTQVYSRS---GLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 +FD LTQVYSR GL E + ++ L M+ DID+FK IND YGH+ GD L Sbjct: 801 EFDSLTQVYSRQYLLGLAERMFMRIKQEQTSLLCMMFDIDHFKLINDQYGHKAGDIALIA 860 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 F+ + K + + R+GGEEF VP ++ G +AE+IR VE P T + + Sbjct: 861 FSEIVSKNLRSNDIFGRLGGEEFLAVVPEISLEAGKKLAERIRLEVEKTPITVGADCITM 920 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 TVSIG+ + + T F++L+ +D LY +K GRNR Sbjct: 921 TVSIGISMYKNNKNLAT--FDELIELSDKALYTAKNSGRNR 959 >UniRef50_Q2LS38 Response regulator protein with GGDEF domain n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LS38_SYNAS Length = 356 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 15/230 (6%) Query: 84 VTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG------IATMAICPIMVSFSVAAINS 137 +T +E+ L+ I +GS SI ++ S + A + + + + I Sbjct: 126 LTTLLELALIGTCFI--FLGSHSSINELLSLKYAGGMFAQFAPFVLVAYIATMFASDIRY 183 Query: 138 LMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 + +V + ++ D LT +Y+R G L S + ++ L+++L+D D K IND YGH Sbjct: 184 GLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSDNLKKINDEYGH 243 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD++L IQ + ++AR GG+EF + +P P L +AE+IR +E P Sbjct: 244 HAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAERIRNAIETTPI 303 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + K ++ T SIGV ASY + + + L+ +AD +Y +K GRNR Sbjct: 304 VLEGKIVHTTASIGV----ASYPSEGYNIDVLLAQADHKMYAAKLGGRNR 349 >UniRef50_B9QWG6 GGDEF domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWG6_9RHOB Length = 410 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 7/201 (3%) Query: 106 FSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK 165 F+ P A L + +AI + SF AI + + +A D LT + +R +A K Sbjct: 186 FANPIQPLAYLVLLMVAIVIVSASFVAMAIERIQVRFEKQALTDSLTGLANRRAFIKAAK 245 Query: 166 S--PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 S QTQ T++L+DID+FKSIND +GH GD+VL+ F ++ I R+GG Sbjct: 246 RWFSSTAQTQAFTLILIDIDHFKSINDQFGHTAGDRVLASFGTAMKSIFPRAIPPGRIGG 305 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF 283 EEFAV +P D + + ++R+ + + + +TVS G+ + S+ DF Sbjct: 306 EEFAVLLPETEKADAVHLLGRLREVISQCAICPKSEASGITVSAGLITATTSH-----DF 360 Query: 284 NKLMVEADTCLYRSKKDGRNR 304 + AD LY +KK GRNR Sbjct: 361 EQAFDHADQLLYEAKKTGRNR 381 >UniRef50_A8MM09 Diguanylate cyclase n=2 Tax=Clostridiaceae RepID=A8MM09_ALKOO Length = 356 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 12/197 (6%) Query: 114 ARLGIATMAICPIMVSFSVAAI---NSLMKQVALRADFDFLTQVYS---RSGLYEALKSP 167 AR +AT AI +V F ++ I N L ++ A DFLT +Y+ + L + Sbjct: 162 ARYALAT-AIVSTVVYFVLSYIYRTNELYLRLKEEATRDFLTGLYNVREFEKVTNELFAT 220 Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 +++ ++L+++++DID+FK +ND +GH GD VL + I +V+R GGEEF Sbjct: 221 IVQRKENLSLLMIDIDFFKKVNDTFGHSSGDLVLKQLSTIITSSCRSFDIVSRQGGEEFT 280 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKL 286 V + + L +AE+IRK VE F + + + +TVSIGV +SY +T+D + L Sbjct: 281 VILLGCDHKTALEIAERIRKNVEDHLFIIDKNEEIKITVSIGV----SSYPEVTNDPHHL 336 Query: 287 MVEADTCLYRSKKDGRN 303 + EAD LY +K++GRN Sbjct: 337 LHEADDALYFAKRNGRN 353 >UniRef50_B8KAR8 Ggdef family protein n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8KAR8_VIBPA Length = 323 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 103/196 (52%), Gaps = 10/196 (5%) Query: 113 SARLGIA-TMAICPIMVSFSVAAINSLMKQVAL--RADFDFLTQVYSRSGLYEALKSPSL 169 SA L I + C I ++ + + + +L A D LT VY+R L Sbjct: 121 SAHLAINFALTFCCIWLTSHILEVKRKTSEASLGQLASRDSLTGVYNRHALVHNFNRYHN 180 Query: 170 KQTQ-HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + + L++++LD+DYFK +ND YGH+ GDKVL A + + D+ LV R+GGEEF + Sbjct: 181 ESAKVPLSLLILDLDYFKQVNDQYGHDVGDKVLVETAALLDALC-DEHLVYRIGGEEFCI 239 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 A+ + N AE IR+ +E F+ + + LTVSIGV D ++ Sbjct: 240 ALHNSNLQHAKYKAELIRQAIEQYSFSGAEAPIKLTVSIGVYECHH-----FDSLESVLK 294 Query: 289 EADTCLYRSKKDGRNR 304 EAD LY++KK+GRN+ Sbjct: 295 EADKELYKAKKNGRNQ 310 >UniRef50_C7RLV2 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RLV2_9PROT Length = 639 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 7/161 (4%) Query: 149 DFLTQVYSRSGLYEALKSP-SLKQTQHLTV--MLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LTQ+ +R + L S + Q+ L + +LLDID+FK IND GH GD VL A Sbjct: 480 DTLTQLPNRRHGLDFLASEWAFAQSNALPMACLLLDIDHFKRINDTLGHPAGDAVLQQLA 539 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 +++ + LV R GGEEFA +P+ N + +AE+IR V+ F WQ++++ LTV Sbjct: 540 DLLKRASRPEDLVFRYGGEEFAAVLPNANAQTAVQIAERIRGLVQKYDFLWQRRSIPLTV 599 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 SIGV A + D L+ AD LY++K GRNR + Sbjct: 600 SIGV----AILSSTGKDSQALIEAADAALYQAKNGGRNRVT 636 >UniRef50_B8DJ36 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DJ36_DESVM Length = 698 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/166 (38%), Positives = 89/166 (53%), Gaps = 15/166 (9%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT V +R L+ + + ++ L+V+LLD D+FKSIND +GHE GD VL Sbjct: 511 ATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLLDADHFKSINDTWGHEAGDMVL- 569 Query: 203 VFARHIQKIVG----DKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ 258 RHI ++G + L+ R+GGEEF V +P L AE+IR VE P + Sbjct: 570 ---RHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALRTAERIRAAVEDAPVAVRD 626 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + TVS+G A Y D + L+ AD L R+K++GRNR Sbjct: 627 VWVGCTVSVGA----AEYRGANDSLDDLIRRADHMLMRAKEEGRNR 668 >UniRef50_A1VD57 Diguanylate cyclase n=3 Tax=Desulfovibrio vulgaris RepID=A1VD57_DESVV Length = 487 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 104/186 (55%), Gaps = 7/186 (3%) Query: 122 AICPIMVSFSVAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTV 177 A+ +M ++A N+++ +++ L+AD D LTQ+++R L + ++ +T+ Sbjct: 288 ALDSVMRHLTLALRNAVVYREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTL 347 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++LDID+FK++ND YGH GD VL A+ ++ AR GGEEF V +P + Sbjct: 348 LMLDIDHFKAVNDTYGHPAGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKC 407 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 G + AE++RK + KT+ +TVSIG+ + A+ + +L+ EAD LY + Sbjct: 408 GRIFAERLRKRLASSRVEVDGKTIAVTVSIGLATLSAAAPLSPE---RLVCEADGALYAA 464 Query: 298 KKDGRN 303 K GRN Sbjct: 465 KAAGRN 470 >UniRef50_C6MHA0 Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MHA0_9PROT Length = 568 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 8/164 (4%) Query: 145 RADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVL 201 RAD D LT + +R Y+ ++ + SL+ +V++LDID FK +NDNYGH GD VL Sbjct: 402 RADIDLLTNLNNRRAFYKFVQPMWAISLRSKSSTSVIILDIDDFKLLNDNYGHPVGDLVL 461 Query: 202 SVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV-ELQPFTWQQKT 260 A IQK ++AR GGEEF + +P D + +A+++RK + +Q + Sbjct: 462 VRLAETIQKEARSGDILARWGGEEFLIFLPETQLADAITIADRMRKRITTIQISIDNGEK 521 Query: 261 LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + T S GV + + ++L N+L+ +AD LY +KK GRNR Sbjct: 522 ISFTASFGVATTQDINVSL----NELIAQADRQLYHAKKKGRNR 561 >UniRef50_Q6ALC0 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALC0_DESPS Length = 652 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 10/161 (6%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH-----LTVMLLDIDYFKSINDNYGHECGDKVLSV 203 D LT + +RS L+E + L++ +H L++++LDIDYFK IND +GH GD VL Sbjct: 493 DSLTGLCNRSQLFE-IAEAELERQRHSSEHNLSLVMLDIDYFKKINDAHGHAAGDLVLKA 551 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 FA +K + D + AR+GGEEF + +P + L +AE+ R VE P +K + Sbjct: 552 FADIGRKYLRDVDVFARIGGEEFIILLPGTDIKVALKIAERFRALVEKNPVMVNEKEIAF 611 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 TVS GV ++ + F +++ EAD+ LY +K+ GRNR Sbjct: 612 TVSFGV----TAWNGIEQTFEEVLHEADSALYVAKEKGRNR 648 >UniRef50_A4CEZ1 Response regulator/GGDEF domain protein n=2 Tax=Alteromonadales RepID=A4CEZ1_9GAMM Length = 412 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 10/166 (6%) Query: 142 VALRADFDFLTQVYSRSGLYEALKSPSLK--QTQHLTVM-LLDIDYFKSINDNYGHECGD 198 + L+A+ D+LT + +R +E + K Q QH T++ ++DID+FK+INDNYGH+ GD Sbjct: 250 IRLQANSDYLTNLPNRRYFFEQTQLNIEKNVQAQHSTILAMIDIDFFKAINDNYGHDAGD 309 Query: 199 KVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ 258 +VL A H ++ + L+AR+GGEEFAV + E R VEL ++ Sbjct: 310 EVLKGLADHF-RLHFSEHLIARLGGEEFAVYFKQSTSAEASQQLEAFRMSVELNSPSFSS 368 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 K + T+SIG+ + + + ++ AD LY++K DGRNR Sbjct: 369 KKIPFTLSIGLADSNET------NVDAILKIADQYLYQAKSDGRNR 408 >UniRef50_Q0AQ22 Diguanylate cyclase n=2 Tax=Hyphomonadaceae RepID=Q0AQ22_MARMM Length = 350 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 11/185 (5%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDY 184 S V + + +++V A D LT + +R E+L+ + Q L+++L DID+ Sbjct: 159 TSNEVTQLRTNLEKVREEAMTDALTGIANRKRFDESLRRARRDADTKKQPLSLILCDIDF 218 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK ND +GH+ GD+++ A + + G+ LVAR GGEEF + +P+ P +AEK Sbjct: 219 FKRFNDTWGHQTGDQIIRFVAGCLTRHAGENHLVARYGGEEFGIVMPNTAPNVAEQVAEK 278 Query: 245 IRKGVELQPF---TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 IRK VE + + + +TVS+G+ A+Y + +L+ +DT LYRSK +G Sbjct: 279 IRKTVESKKLLRKSTNEDLGNITVSLGI----ATYHE-GESIEELIERSDTNLYRSKTEG 333 Query: 302 RNRTS 306 RNRT+ Sbjct: 334 RNRTT 338 >UniRef50_B8IFL7 Diguanylate cyclase n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IFL7_METNO Length = 628 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 5/174 (2%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHEC 196 ++ ++ ++A+ D LT + +R L +SP + ++L+DID+FK+IND YGH Sbjct: 433 TMTSELRVQAETDGLTGLLNRRMLDRLAQSPPGSADDKVCLILIDIDHFKAINDTYGHAT 492 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD+VL A +Q ++ ++AR GGEEFAV VP + + +A K+R ++ FT Sbjct: 493 GDRVLIQMAELLQSVLRASDVIARFGGEEFAVLVPGADLSGAITVARKVRIALQRARFTT 552 Query: 257 QQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 T + +T S GV GR + + L+ AD LYR+K DGRNR R Sbjct: 553 PDGTPVRVTASFGVARGRRG----QEAWPCLVELADEALYRAKSDGRNRVRFAR 602 >UniRef50_Q0AV70 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AV70_SYNWW Length = 459 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 102/173 (58%), Gaps = 11/173 (6%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDN 191 + L + + ++A D LT +Y+ + E L+ + + + Q LT+M+LDID+FKSIND Sbjct: 292 LRELNRILQVQAITDSLTGLYNHRQVLEKLQLEIARANRYQQELTIMMLDIDHFKSINDE 351 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 +GH+ GD VL A+ I++ + + + R GGEEF + +P N +G + E+IR+ VE+ Sbjct: 352 FGHQVGDVVLVEVAQIIKRNLRNIDIAGRYGGEEFLIILPQTNLNNGRQVGERIRRQVEI 411 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + F ++ +TVSIG+ + + D+ + AD LYR+K+ GRNR Sbjct: 412 EGFEDSKEG--ITVSIGISQHQGEEMV---DY---IERADQLLYRAKRKGRNR 456 >UniRef50_B6BNA8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor n=3 Tax=Campylobacterales bacterium GD 1 RepID=B6BNA8_9PROT Length = 460 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 118/206 (57%), Gaps = 19/206 (9%) Query: 104 SPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 S F + ++ S+ +A++AI S ++ N +K++A++ D+LT +Y+RS L + Sbjct: 265 SDFEL-KLISSYAHLASLAIEKENHSKAIKESNERLKELAIK---DYLTGLYNRSKLDNS 320 Query: 164 LKSPSLKQTQHLTV---MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L+ + ++ +V +++DIDYFKS+ND +GH+ GDKVL FA+ + I + +V R Sbjct: 321 LEYQIKRSKRYESVFGVIMMDIDYFKSVNDKHGHQVGDKVLLEFAKVLTDISRETDIVGR 380 Query: 221 MGGEEFAVAVPSVNPVDGLL-MAEKIRKGVELQPF-TWQQKTLYLTVSIGVGSGRASYLT 278 GGEEF + + + + DG+ +A KIR+ +E+ F ++KT L V+I Sbjct: 381 WGGEEFLIIIENADK-DGITNLAHKIRETIEMHDFPVVKRKTASLGVTI---------YN 430 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNR 304 + N+L+ D LY++K GRN+ Sbjct: 431 KDEKINELIGRVDKALYKAKNSGRNQ 456 >UniRef50_Q2BQS0 GGDEF family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQS0_9GAMM Length = 314 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 100/184 (54%), Gaps = 7/184 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLT---VMLLDI 182 I ++ ++ L +++ A+ D +T Y+R E++ ++ T + +DI Sbjct: 133 IWLAINITEKKRLEQRLKDLAEKDPMTGAYNRRFFRESIDQHYATFKRYGTTYSLAFIDI 192 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK +ND +GH+ GD V+ HIQ+ + L++R GGEEF V P +N + L+A Sbjct: 193 DYFKKVNDQFGHDVGDGVICHLVTHIQEQLRTTDLLSRFGGEEFVVLFPHINLDEACLVA 252 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R +E+ P+ + TVSIG+ RA ++ D ++ AD+ LY+SK GR Sbjct: 253 ERLRATIEMTPYKSINHKVPFTVSIGISEVRAEDESVED----ILKRADSALYQSKSSGR 308 Query: 303 NRTS 306 N+ + Sbjct: 309 NKVT 312 >UniRef50_C4WLB9 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WLB9_9RHIZ Length = 379 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 11/163 (6%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQ--TQHLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 A D LTQV +R G+ + S L Q + +T++L DID+FK +ND +GH GD ++ Sbjct: 217 AHTDPLTQVRNRRGMQAFISSVHLDQGAREPVTIVLADIDHFKMVNDRFGHHAGDMIIVD 276 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT--L 261 FA+ +QK G VAR+GGEEFA+ +P + G+ + E +R +E W + L Sbjct: 277 FAQLLQKWAGRGSCVARLGGEEFAILLPGTSMHIGVTLIEALR--LEFASRKWPHISAHL 334 Query: 262 YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +LT S G+ + L + FN + ADT LY++K+ GR+R Sbjct: 335 HLTASFGL-----TTLEQGEPFNSAIARADTNLYKAKQRGRDR 372 >UniRef50_C6BZK2 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZK2_DESAD Length = 383 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 97/174 (55%), Gaps = 12/174 (6%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSIN 189 AA+ L K VA+ D LT V SR + EA + +L+ L+V+++DID+FK +N Sbjct: 198 AAMEDLKKLVAV----DELTGVCSRRRVLEAGDCIFKSALRFNNKLSVLMMDIDHFKKVN 253 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D++GH GD+VL A ++ + R+GGEEF V +P DG+ +AE++R V Sbjct: 254 DDHGHCVGDEVLKETASRCSDVLREVDHFGRLGGEEFLVILPHSGVHDGIKVAERLRSCV 313 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + F + L ++VSIGV R DF L+ EAD LYR+KK GR+ Sbjct: 314 RERMFKVGESYLPVSVSIGVAELRGH-----GDFKSLIQEADEQLYRAKKCGRD 362 >UniRef50_A4VQQ9 GGDEF domain protein n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VQQ9_PSEU5 Length = 466 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 7/177 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 S+A + Q+A A+ D LT V SR L++ + +H L++++LDID+FK Sbjct: 291 SIARLRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAELARARRHNESLSLLMLDIDHFKR 350 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND +GH GD VL F+ ++ L+ R+GGEEFA+ +P + +AEKIR Sbjct: 351 VNDVHGHPIGDAVLKQFSETCAGMLRAHDLLGRLGGEEFAIVLPHTDAEGARCVAEKIRT 410 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 V P + +TVSIG+ A L + ++LM AD LY +K+ GRN+ Sbjct: 411 AVAQTPMPTAAGDITVTVSIGL----AQMEGLPGEVDQLMARADQALYEAKRGGRNQ 463 >UniRef50_B3PIC1 Sensory box/GGDEF family protein n=5 Tax=Gammaproteobacteria RepID=B3PIC1_CELJU Length = 322 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 26/197 (13%) Query: 123 ICPIMVSFSVAAINSLMKQVALR-----ADFDFLTQVYSRS----------GLYEALKSP 167 IC I+ + A+N + +Q A + + D LT +++R Y+ +SP Sbjct: 131 ICVIIYDVTDTAVNKIAQQHANKQLQNLSRTDHLTSLFNRGYWELRLIQEFKRYDRYESP 190 Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 S ++++LDID+FK INDNYGH GD+ + +R I++ V D + R GGEEF Sbjct: 191 S-------SLIMLDIDHFKKINDNYGHTVGDEAIRCVSRVIKEQVRDLDIAGRYGGEEFG 243 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + + S N ++AE++R +E Q + ++ T+S+GV A D + + Sbjct: 244 IILTSTNGDGACVIAERLRSIIEKQTVYAEGHEIHFTISLGV----AELNDHMHDHRQWI 299 Query: 288 VEADTCLYRSKKDGRNR 304 +AD LY+SK+ GRNR Sbjct: 300 EKADHALYKSKESGRNR 316 >UniRef50_B8JB86 Diguanylate cyclase n=4 Tax=Anaeromyxobacter RepID=B8JB86_ANAD2 Length = 764 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 94/175 (53%), Gaps = 15/175 (8%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL----TVMLLDIDYFKSINDNYG 193 L Q A D LT + + E L + L Q Q +++L DID+FKS+ND YG Sbjct: 584 LFDQTERLATTDGLTGLTNHRTFQERLDA-HLGQAQRYGKRTSLLLCDIDHFKSVNDTYG 642 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL AR + + +VAR GGEEFA+ +P + +++AE+IR+ V Sbjct: 643 HPVGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAMVIAERIREKVGQLV 702 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK---LMVEADTCLYRSKKDGRNRT 305 F +Q L +T+S+GV T DD + L+ AD CLY +K+ GRN++ Sbjct: 703 FETEQGPLKVTLSLGVA-------TFPDDGAQKPALIERADACLYHAKRHGRNQS 750 >UniRef50_Q21JG3 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JG3_SACD2 Length = 603 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 12/200 (6%) Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK-- 165 +P+ F G +I MV S+A + S M ++ ++ D LT++ +R + Sbjct: 378 LPRTFFTENGFQIGSIIE-MVLLSLA-LGSRMTELKQQSHTDALTEIGNRRRFDDVFPVE 435 Query: 166 -SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + + Q L ++++DIDYFK +ND +GH+ GD+ L A I+ + L R GGE Sbjct: 436 FERAQRNKQPLALLMIDIDYFKKLNDTFGHDAGDQALRAVATTIKTLTRKPMLPCRFGGE 495 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EFAV +P + ++AE+IR+ + +P ++ +TVS+GV S Y T + Sbjct: 496 EFAVILPRTDSAAAKIVAERIRQTIAEKPMAKRE----VTVSVGVASTDMGYFTSS---R 548 Query: 285 KLMVEADTCLYRSKKDGRNR 304 +M AD CLY +K+ GRNR Sbjct: 549 AIMNAADECLYLAKEMGRNR 568 >UniRef50_B9M798 Diguanylate cyclase n=1 Tax=Geobacter sp. FRC-32 RepID=B9M798_GEOSF Length = 418 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 100/174 (57%), Gaps = 11/174 (6%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEA--LKSPSLKQTQHLT--VMLLDIDYFKSIND 190 +++ ++Q+A++ D LT +++R + K+ S ++ LT V+ +D+DYFKS+ND Sbjct: 246 VHAELEQMAIK---DELTGIFNRRHILSKANFKAISRQREGELTIGVLNMDVDYFKSVND 302 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD+VL +R + L R+GGEEF V +P + + +AE+I + V Sbjct: 303 TYGHLVGDEVLKEISRRLTDSCRASDLAGRIGGEEFIVLLPDTAMTEIIAIAERIHRSVG 362 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +PF +Q L +T+S+GV A L D ++ + ADT LYR+K GRNR Sbjct: 363 EKPFHVEQHDLAVTISVGV----ACTLPGEKDLSQAIRRADTALYRAKNMGRNR 412 >UniRef50_Q47Y21 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Y21_COLP3 Length = 722 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 6/159 (3%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +R E L H L++MLLDID+FKS+ND YGH GD+VL +F Sbjct: 561 DALTGAVNRHHFNEVLDQEIANVNNHGSPLSIMLLDIDHFKSVNDRYGHGVGDEVLVMFY 620 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + + V +VAR+GGEEF + +P+ V+ AE++R+ + + +TV Sbjct: 621 QTCVEAVRSSDVVARIGGEEFVIIMPNTQLVNAQKFAERLRQKIAKLELNIANNQISVTV 680 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 SIGV ++ Y T + F + AD LY++K GRN+ Sbjct: 681 SIGVSQWQSEYFTNAETF---VAHADKSLYQAKNSGRNK 716 >UniRef50_Q1YG68 GGDEF domain protein n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YG68_MOBAS Length = 382 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 9/160 (5%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT + +R Y+AL + L Q + +T++++D D+FK +ND YGHE GD+ L V Sbjct: 203 DALTGLANRRA-YDALIAEELAQRRGAEIGVTLLVVDFDHFKQVNDTYGHEAGDEALKVV 261 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 +R ++ V + V R GGEEF V +P G AE+IR +E P + L LT Sbjct: 262 SRILRSCVREGDYVCRHGGEEFTVILPQTGLPQGRRTAERIRHAIEAAPLIAGDQNLSLT 321 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 VSIGV +G + DD N L AD LY +K GR++ Sbjct: 322 VSIGV-AGAPQH---GDDPNTLYRCADAALYEAKSAGRDQ 357 >UniRef50_A0Y2V2 GGDEF family protein n=3 Tax=Alteromonadales RepID=A0Y2V2_9GAMM Length = 524 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 98/165 (59%), Gaps = 10/165 (6%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 Q+ A D LT ++R L L LKQT ++ +DID+FK +ND +GH+ GD+ Sbjct: 365 QLKHDAQTDPLTNTHNRRSLNGLLSQLMLKQTP-FAILEIDIDFFKRVNDTFGHDKGDEA 423 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L V A I+KI +V+R+GGEEF + +P + L +AE++R VE T Q +T Sbjct: 424 LKVLADIIKKISRKGDIVSRIGGEEFLLVLPHEDSQSALKIAERLRTTVE----TTQMET 479 Query: 261 L-YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + ++TVSIG+ A++ T +++ +++ AD LY +K+ GRNR Sbjct: 480 IGFITVSIGI----ATWPTHSNNIDQVYKCADKALYYAKEHGRNR 520 >UniRef50_A6WMZ7 Diguanylate cyclase n=3 Tax=Shewanella baltica RepID=A6WMZ7_SHEB8 Length = 325 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 11/192 (5%) Query: 115 RLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK-SPSLKQTQ 173 R +AT C I + IN + + A+ D LT +R L L+ S Q Q Sbjct: 136 RFSVATFD-CIIFAAIFAHIINKQRQALVHLANTDELTGALNRKQLKTKLELSVYEYQQQ 194 Query: 174 HL--TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + +++L+DID+FK +NDN+GH GD++L+ F++HIQK + L+ R GGEEF + +P Sbjct: 195 QIPASLLLIDIDFFKMVNDNFGHIMGDQLLNKFSQHIQKKIRKDDLLFRFGGEEFLILLP 254 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + ++AE +R+ +E Q F Q +T SIGV R + D + + D Sbjct: 255 NTQFESAAIVAEDLRRSIEEQHFLDQHTQ--VTCSIGVADLRQA-----DTLDTWLKTCD 307 Query: 292 TCLYRSKKDGRN 303 LY +K GRN Sbjct: 308 NLLYNAKNAGRN 319 >UniRef50_A4Y784 Diguanylate cyclase n=18 Tax=Shewanella RepID=A4Y784_SHEPC Length = 368 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 69/180 (38%), Positives = 99/180 (55%), Gaps = 12/180 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK-QTQH--LTVMLLDIDYFKS 187 V + S M+ ++L A D LT +Y+R A++ + Q QH +++++DID FK Sbjct: 190 EVQHLKSEMENLSLAAMTDQLTSLYNRRAYEIAIQDHIHRAQEQHSRCSLLIVDIDRFKQ 249 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 ND YGH+ GDKVL+ A +++ V VAR GGEEF V +P+ + D L +AE +R+ Sbjct: 250 FNDTYGHQIGDKVLAYVALALKQCVRGDDFVARYGGEEFVVLLPNTHFHDALQVAETLRE 309 Query: 248 GVELQPFT-WQQKTLYL---TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + + T + K L L TVSIG+ S L DD L AD LY +K DGRN Sbjct: 310 RISERHLTIGKDKKLSLGAITVSIGLAS-----LQEGDDAETLFSRADKALYEAKSDGRN 364 >UniRef50_A0KEB8 Tetratricopeptide repeat family n=2 Tax=Aeromonas RepID=A0KEB8_AERHH Length = 596 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 12/160 (7%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 A FD LT++ +R L E L + +Q LT++++DID+FK IND +GH+ GD+ + A Sbjct: 429 ATFDQLTELPNRRALLERLAT-QWQQEGPLTLLIIDIDHFKQINDRHGHQAGDRAIQRLA 487 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 R ++ D LV R GGEEF VAVP + D +AE++R+ + Q +T+ Sbjct: 488 RELRSWAPDLQLVGRWGGEEFLVAVP-LPAADCWYLAEQLRQRI------GQIDKPRMTI 540 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 SIGV +GR++ D +L+ AD +Y++K+ GRN+T Sbjct: 541 SIGV-AGRSA---ADDGLGQLIHRADMAMYQAKRQGRNQT 576 >UniRef50_C8VW84 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VW84_DESAS Length = 314 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 97/173 (56%), Gaps = 10/173 (5%) Query: 135 INSLMKQVALRADFDFLTQVYSR----SGLYEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 + L+++V A DFLT + +R + E L + + +++++DID FK IND Sbjct: 141 LQQLLQKVEQIAITDFLTGITNRRFAIDRMNEELSRIN-RGEDGFSLLMIDIDNFKDIND 199 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 ++GHECGD +L I+ ++ + ++AR GGEEF V +PS D ++AEKI V Sbjct: 200 SHGHECGDYILKDVVNLIKSVLRNYDMMARWGGEEFLVMLPSTEINDAKIVAEKIISNVR 259 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 Q FT++ + ++T++ GV +A DD + ++ AD +Y KK G+N Sbjct: 260 TQIFTYKGNSFHVTITAGVAQHQAG-----DDLDSIIKRADEAMYHGKKSGKN 307 >UniRef50_Q2BML0 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BML0_9GAMM Length = 577 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 95/162 (58%), Gaps = 7/162 (4%) Query: 146 ADFDFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 AD D LT +Y+R G E + + + + L +++LDID+FK+IND +GH GD VL+ Sbjct: 410 ADRDQLTGLYNRRGFDKVMEPVFGNAYRHHRELCLLVLDIDHFKAINDRHGHGYGDLVLT 469 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A+ +Q + L+AR GGEEF + +P N ++ + +AE++ + + + + Sbjct: 470 DLAKVLQHELRAGDLIARWGGEEFLLLLPETNHMEAVTLAERLIRNISNREVEGDGVQEH 529 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 TVSIG+ + ++ F +L+VEAD LYR+K+ GRN+ Sbjct: 530 YTVSIGIAELKPPIVS----FKQLLVEADKHLYRAKETGRNK 567 >UniRef50_C0QRX3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRX3_PERMH Length = 632 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 16/215 (7%) Query: 97 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRA-DFDFLTQVY 155 V+D S+ I ++ + I ++VSF V+ + L+ +D LT Y Sbjct: 173 VLDFSIEKLHEIKKIVRKIQNALLIGISFVLVSFIVSIYQFFRYEKKLKKMYYDPLTGAY 232 Query: 156 SRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK 215 +R LYE + L + TV ++DID+FK IND YGHE GD VL + I + + D Sbjct: 233 NRLFLYE---NSDLFKFYPFTVFVIDIDHFKKINDTYGHEIGDFVLKELTKRINRCIRDN 289 Query: 216 GLVARMGGEEFAVAVPSVNPV------DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGV 269 ++ R GGEEF + + + NPV + L +A++I+ +E PF + L +TVSIG+ Sbjct: 290 DILIRYGGEEFLLLIRA-NPVSPEYKKNILNLAKRIKNEIEFYPFDIENIKLKVTVSIGI 348 Query: 270 GSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 ++ + + AD LY +K+ GRNR Sbjct: 349 -----NFYEHEKSIEEAIKHADIALYSAKQKGRNR 378 >UniRef50_B8FMG8 Diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMG8_DESAA Length = 417 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 112/203 (55%), Gaps = 5/203 (2%) Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK-- 165 I +A + ++ +++ I+VS + + + + + D LT++++R L Sbjct: 209 IASGLTAAISLSLLSMIWILVSRLARRLTKAYETIEVMSITDELTRLHNRRHFETRLAEE 268 Query: 166 -SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 S SL+ +++M+LDID+FK +NDNYGH+ GD VL+ FA ++ V + AR GGE Sbjct: 269 ISRSLRYGSPMSLMILDIDHFKRVNDNYGHQAGDWVLTQFATLLKDNVRKADVPARWGGE 328 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGS-GRASYLTLTDD 282 EF V + + AEK+R+ VE F +++ +TVS+GV S S + + Sbjct: 329 EFVVILTESTISQARMAAEKVRRNVESAEFNIPDGRSIPVTVSVGVASLDMISGDEMGSE 388 Query: 283 FNKLMVEADTCLYRSKKDGRNRT 305 + L+ AD LYR+K++GRNRT Sbjct: 389 ADVLVKTADDALYRAKQEGRNRT 411 >UniRef50_C1M322 Inner membrane protein yeaI n=1 Tax=Citrobacter sp. 30_2 RepID=C1M322_9ENTR Length = 473 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 61/163 (37%), Positives = 96/163 (58%), Gaps = 18/163 (11%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 D +T++Y+R Y++LKS K T + VM+LDID FK IND YGH+ GD+V+ + Sbjct: 316 DAMTKIYNRKLFYKSLKSSLAKGT--VCVMVLDIDKFKRINDTYGHQEGDRVIISIVDIV 373 Query: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL-----QPFTWQQKTLYL 263 K + D + AR+GGEEFA+ + + + +++AE+IR+ VE + ++K + Sbjct: 374 NKSIRDTDIFARVGGEEFAILLKCNDKDEAIVVAERIRRNVENGTTIPNSYNLKEK---M 430 Query: 264 TVSIGVGSGRASYLTLTDD--FNKLMVEADTCLYRSKKDGRNR 304 T+SIGV Y + DD +K++ AD LY +K GRN+ Sbjct: 431 TISIGV------YCSKIDDESADKVVSYADAALYEAKNSGRNK 467 >UniRef50_A9AXN1 Diguanylate cyclase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXN1_HERA2 Length = 408 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 19/184 (10%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFK 186 F+V + ++ A D LT + +R + E L+ K Q V++LDID FK Sbjct: 202 FAVMITQRMQCDLSALASIDVLTGIANRRAINEYLEQAIAKWRRNQQGFAVIMLDIDCFK 261 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDK----GLVARMGGEEFAVAVPSVNPVDGLLMA 242 IND YGH GD VL RHI ++ ++ L+ R GGEEF + V + LMA Sbjct: 262 QINDRYGHHAGDSVL----RHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMA 317 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN--KLMVEADTCLYRSKKD 300 E++R+ ++ QP W + + TVSIG+ + FN +L+ AD LY +K+ Sbjct: 318 ERLRQAIQQQPTVWNDQVIQHTVSIGIA------VCGMHGFNEAQLLTAADLALYEAKET 371 Query: 301 GRNR 304 G+NR Sbjct: 372 GKNR 375 >UniRef50_C6WY37 Diguanylate cyclase n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WY37_METML Length = 395 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 99/190 (52%), Gaps = 13/190 (6%) Query: 127 MVSFSVAAINSLMKQVALRADF------DFLTQVYSRSGLYEA---LKSPSLKQTQHLTV 177 ++ FSVA LM L AD D LT +R + E L++ ++ + L + Sbjct: 200 LLEFSVAFGLLLMLNHRLIADVYQMASRDALTGAMNRRRIEEEAVRLRARCIRTGEPLAI 259 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 M++DID+FKSIND YGH GDKVL A QK + + AR GGEEF + + S + Sbjct: 260 MMIDIDFFKSINDRYGHPAGDKVLRAIADIAQKSIRAEDYFARYGGEEFCMLLTSTTESE 319 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 L +AE++R T ++ L +TVSIGV L +F ++ AD LY + Sbjct: 320 ALDLAERLRLAFAEFTLTLGKEQLNITVSIGVADSSMVGL----EFADMVTAADKALYCA 375 Query: 298 KKDGRNRTST 307 K++GRNR T Sbjct: 376 KENGRNRVIT 385 >UniRef50_C7R8C4 Diguanylate cyclase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8C4_KANKD Length = 700 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 104/183 (56%), Gaps = 20/183 (10%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK----QTQHLTVMLLDIDYFKSIN 189 A+N ++++++ D LT++Y+R G +EA + + K LT +LDID+FK +N Sbjct: 526 AMNERLEKMSVE---DELTKIYNRRG-FEAAANEAFKLACRNRTALTFAMLDIDHFKRVN 581 Query: 190 DNYGHECGDKVLSVFARHIQKI-VGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 D +GH GD+ + + A+ ++K+ + + AR GGEEF V + N M E++RK Sbjct: 582 DTWGHVVGDECIVMVAKELKKVFLRETDFYARYGGEEFVVLLTGGNTDKHCRMLEQLRKD 641 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN----KLMVEADTCLYRSKKDGRNR 304 +E + + LTVSIGV +L +DFN +L+ +AD LY+SK +GRNR Sbjct: 642 IENHKVAVDGENISLTVSIGV-------FSLKEDFNISYHQLVSKADKLLYQSKTEGRNR 694 Query: 305 TST 307 S+ Sbjct: 695 ISS 697 >UniRef50_A0LSI3 Diguanylate cyclase n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSI3_ACIC1 Length = 517 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 67/192 (34%), Positives = 105/192 (54%), Gaps = 19/192 (9%) Query: 131 SVAAINS-LMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFK 186 ++A NS L++Q+ L A D LT V +R L E L + + + Q ++V+++DID+FK Sbjct: 331 ALALANSWLLEQITLLAATDMLTGVANRRTLEENLDRMFAQASRAAQPISVVMVDIDHFK 390 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 IND +GH+ GD+ L AR +Q+ LVAR GGEEF V +P + AE +R Sbjct: 391 HINDTFGHQVGDQTLQRVARALQQGCRSSDLVARYGGEEFVVVLPDTDLAGAATAAENLR 450 Query: 247 K---GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + G++ +P +TVS+GV A++ + ++ AD LY+SK GRN Sbjct: 451 RRIFGLDAEP--------RVTVSLGV----ATFPLHGGSPDHILSAADAALYQSKSAGRN 498 Query: 304 RTSTMRYGEEVV 315 R + G +V+ Sbjct: 499 RVTLAGVGSQVL 510 >UniRef50_A8FHG3 Possible diguanylate cyclase n=2 Tax=Bacillus pumilus RepID=A8FHG3_BACP2 Length = 529 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 12/171 (7%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECG 197 L +++ RA D LT +++RS E + + Q VML DID+FK IND +GH G Sbjct: 352 LQEELERRAYIDGLTNIFNRSSFIERTQMILEEDAQDTAVMLFDIDFFKQINDTHGHHIG 411 Query: 198 DKVLSVFARHI----QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 D+ L RH+ Q+ + L R GGEEFA+ +P + + +AE+IR E+ Sbjct: 412 DEAL----RHVVTICQQHLQMDDLFGRYGGEEFAICLPHHSFEEACHIAERIRHSFEMSF 467 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 F +++ + +T S G+ + L+ EAD LY SK+ GRNR Sbjct: 468 FENEEEKVRVTASFGIAHTAYD----PNVLETLLFEADQALYMSKRQGRNR 514 >UniRef50_Q1N6U5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Bermanella marisrubri RepID=Q1N6U5_9GAMM Length = 564 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 11/182 (6%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDY 184 V+ A + +++ L + D LT VY+R L E ++ S + + ++++LD+DY Sbjct: 389 VAKRTAELEQKNEELRLLSSTDRLTGVYNRMKLEEQIQHEISRAQRYKLDYSIVMLDVDY 448 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK++ND++GH+ GD+VL +FA +Q V + +V R GGEEF ++ N + +AEK Sbjct: 449 FKNVNDSFGHQVGDRVLKMFAVELQNNVRESDVVGRWGGEEFIISCSCTNADNAFSLAEK 508 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +R+ +E F + T S GV S L D L+ AD LY SK+ GRN+ Sbjct: 509 LREIIEHLDFG---SGIACTASFGV-----SQYQLEDSLESLISRADNALYESKRMGRNK 560 Query: 305 TS 306 S Sbjct: 561 VS 562 >UniRef50_A6VRQ0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VRQ0_MARMS Length = 469 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 66/204 (32%), Positives = 109/204 (53%), Gaps = 10/204 (4%) Query: 106 FSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVAL--RADFDFLTQVYSRSGLY-- 161 F+I + F + + + + AI S Q AL RA FD LT++ +R + Sbjct: 257 FAIYKRFPSTPSEKDFELINFASNLASIAIESFRAQEALQKRAYFDHLTELANRGYFFQQ 316 Query: 162 -EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 E L + S ++ L ++++D+D+FK +ND +GH+ GD VL + A+ I+ L+AR Sbjct: 317 CETLLNLSREKNFPLAILMMDVDHFKKVNDEFGHKTGDLVLQMLAQMSLSILRRDDLIAR 376 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ-PFTWQQKTLYLTVSIGVGSGRASYLTL 279 +GGEEFA+ +P + L +AE++R+ +E + + + TVS+GV + T+ Sbjct: 377 IGGEEFAILLPFTEKDEALRIAEQLRESIESSMVLSLDHQEVVFTVSLGVACRQDGDCTV 436 Query: 280 TDDFNKLMVEADTCLYRSKKDGRN 303 D NK AD LY++K GRN Sbjct: 437 DDILNK----ADKALYQAKAAGRN 456 >UniRef50_A6DDS7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDS7_9PROT Length = 750 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 12/178 (6%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFK 186 + ++ I L KQ+ A +D LT +Y+R+ LK S + L+++ LDIDYFK Sbjct: 578 YQLSKIKKLSKQLETMAFYDKLTNIYNRAKFKNILKEFIEYSKRYKTPLSLIFLDIDYFK 637 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 INDN+GHE GD VL + + + + + R GGEEF + +P+ + ++AEKIR Sbjct: 638 KINDNFGHEKGDLVLKEMVKVAKLSLRESDVFGRWGGEEFLILLPNTDINGAKIVAEKIR 697 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +E F + +TVS+GV + L D + AD LY++KK+GRNR Sbjct: 698 DAIESHDFD----GIKVTVSLGV-----TQLKEDDTIESFVNRADIALYQAKKEGRNR 746 >UniRef50_C0N773 GGDEF domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N773_9GAMM Length = 462 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 13/174 (7%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSP--SLKQTQH-LTVMLLDIDYFKSINDN 191 +N ++Q++ R D LT +++R L +A + K+ QH T+++LDID FK IND+ Sbjct: 296 VNKKLEQLSQR---DHLTGIHNRYYLDQAFQQELTRYKRYQHGFTIVMLDIDLFKQINDS 352 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH GD V+ A +++ V D+ +VAR GGEEF + P + +AE +R+ + Sbjct: 353 YGHVVGDDVIKQIAMLLREHVRDQDVVARWGGEEFLILNPETSLDGARTLAEHLRRLIRR 412 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 PFT + + +TVS GV RA +D ++ AD+ LY++K+ GR++T Sbjct: 413 TPFTVDK--IDVTVSFGVTDYRAG-----EDIETMIQRADSALYQAKQSGRDKT 459 >UniRef50_Q39ZK6 Response regulator receiver modulated diguanylate cyclase n=8 Tax=Geobacter RepID=Q39ZK6_GEOMG Length = 314 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 95/163 (58%), Gaps = 6/163 (3%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +++R L E + + ++ L++++LDIDYFK IND YGH+ GD+VL++ A Sbjct: 145 DPLTHLHNRRHLMEMVDKEFQRSSRKGAPLSLVILDIDYFKKINDTYGHQEGDRVLTILA 204 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 +++ + L AR GGEEF + +P + L +AE++R V+ F L +T+ Sbjct: 205 DIVRRRLRSYDLAARYGGEEFVLLLPETPVQEALSIAERLRLEVQEHVFEGSLGGLVITI 264 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 S+GV + +S + + + L +AD LYR+K+ GRNR M Sbjct: 265 SLGVATYPSSRV---ESIDSLFRQADEALYRAKQGGRNRVELM 304 >UniRef50_A6LR61 Diguanylate cyclase n=3 Tax=Clostridium RepID=A6LR61_CLOB8 Length = 1784 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 98/167 (58%), Gaps = 11/167 (6%) Query: 142 VALRADFDFLTQVYSRSGLYEAL----KSPSLKQTQHLTVMLLDIDYFKSINDNYGHECG 197 + + + D LT VY+R EAL S ++++ VM+ DID FK +ND YGH+ G Sbjct: 1443 LTISSTLDKLTGVYNRKYFEEALLFLLDSAKARESE-FAVMMFDIDDFKGVNDKYGHQTG 1501 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D+VL A ++K + ++ R GGEEF + +P+VN + + E+IRK +E Sbjct: 1502 DEVLVKVADEVKKCMSKGDIIGRYGGEEFIILLPNVNCEAAINLGERIRKNIEEARILGD 1561 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 ++ +TVSIG+ +SY +L ++ +++ AD LY++K+DG+NR Sbjct: 1562 KRK--VTVSIGI--AMSSYESLNNE--EIIRRADQALYKAKRDGKNR 1602 >UniRef50_Q5QV72 Intracellular signaling protein (PAS,GAF,GGDEF domains) n=2 Tax=Idiomarina RepID=Q5QV72_IDILO Length = 453 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 97/174 (55%), Gaps = 9/174 (5%) Query: 137 SLMKQVALRADFDFLTQVYSR---SGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYG 193 S K++ A DFLT + +R + +E L+ K ++D+D+FK +NDNYG Sbjct: 281 SKTKRLEKLAYTDFLTGLSNRLFITERFEELEPNDNKFANVTCFAIIDVDHFKKVNDNYG 340 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H+ GD+VL AR I +V V+R+GGEEFA+ + + + EK+R +E Sbjct: 341 HDAGDEVLQQTARKIAGLVRISDCVSRVGGEEFALLLTDLPREKAERVLEKVRTAIEGNA 400 Query: 254 FTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 T + +++ +TVSIG A+ L D+FN +AD LY+SK+DGRNR S Sbjct: 401 ITIDKNQSIKVTVSIG-----ATELKAEDEFNSAYKKADLALYKSKRDGRNRVS 449 >UniRef50_Q8D5C1 FOG: GGDEF domain n=1 Tax=Vibrio vulnificus RepID=Q8D5C1_VIBVU Length = 337 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 25/216 (11%) Query: 100 ISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN--------SLMKQVALRADFDFL 151 +++ F + Q F + TM I FS+AAI S +++ A D L Sbjct: 133 VNITYQFYLEQYFD----MLTMMINFAFCYFSIAAIAHVYEFNRVSTENKLSKLATLDPL 188 Query: 152 TQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 T +R L Y+ALK+ Q +++LDID+FK+IND YGH+ GD VL + + Sbjct: 189 TGTNNRLALKHRYQALKT----QGTAFFLLVLDIDHFKAINDEYGHDGGDCVLRSVVKTM 244 Query: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIG 268 +VG++ V R GGEEF + + V+ L AE IR+ + P +++ + +TVSIG Sbjct: 245 AHVVGEEN-VFRQGGEEFCILLAGVSHQHALKTAETIRQNIGDTPIHYREGAISVTVSIG 303 Query: 269 VGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + AS + D+ N+ +AD LY +K GRNR Sbjct: 304 LAEAHAS--SCVDEINR---QADANLYDAKSQGRNR 334 >UniRef50_A8H680 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8H680_SHEPA Length = 261 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 6/174 (3%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDN 191 ++SL K++ L A D LT++ +R + E + ++ + L+V+ LD+D FK+IND Sbjct: 86 VDSLEKEMRLLASLDPLTELLNRRAFFRDAELYIHRAKQEGRMLSVIALDLDKFKAINDC 145 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH GD VL F+ I+ L+ R+GGEEFA+ +P+ + +AE++ + + L Sbjct: 146 YGHSAGDAVLRHFSTTIRANCRTSDLMGRLGGEEFALLLPNTSASAAYALAERLHQALRL 205 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 + T+ TVSIGV S TD+ L+ +AD LY +K+ GRN T Sbjct: 206 TAIQYGHSTMRYTVSIGVISVVPQK---TDNIEALLNKADRSLYLAKETGRNCT 256 >UniRef50_A9CEL7 GGDEF family protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CEL7_AGRT5 Length = 589 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 14/161 (8%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 D LT + +R L EAL K T L ++LDID+FK ND +GH+ GD V+ A+ + Sbjct: 431 DALTGLLNRRSLDEALNRHIEKPTGSLACLMLDIDHFKRFNDRFGHDAGDAVMQYVAQVL 490 Query: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY-LTVSI 267 + D+G + R GGEEF V +P D +AEK+R VE PFT++ + L +T+SI Sbjct: 491 SEATSDQGTLFRFGGEEFTVLMPDAGIEDATKLAEKLRHAVERAPFTYRGRLLDPVTISI 550 Query: 268 GV----GSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 G+ G+G S ++ AD L +K+ GRN+ Sbjct: 551 GIATAPGAGTVS---------SVLERADAALLSAKQTGRNK 582 >UniRef50_B2JTM3 Diguanylate cyclase n=3 Tax=Burkholderia RepID=B2JTM3_BURP8 Length = 202 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 97/181 (53%), Gaps = 6/181 (3%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYE-ALKSPSLKQTQHLTVMLLDIDYFKSINDN 191 AA++ ++ ++ L D D LT+ +R A + + +++ L ++ DID FKSIND Sbjct: 17 AAMSDVIDRLTLERDLDSLTETLNRRAFERMAGRRVADRRSYPLALIAFDIDNFKSINDR 76 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH GD VL FA ++ V +K +VAR+GGEEF + +P + +AE++R +E Sbjct: 77 YGHAAGDAVLRQFAAILRAAVREKDVVARIGGEEFVLLLPGADDKFAYQIAERLRIVLES 136 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 F + TL +T S G+ R + L+ AD LY +K+ GRNR T G Sbjct: 137 SRFNEIEATLRVTTSAGIARHRPG-----ETVGALLARADHLLYAAKRAGRNRVVTEPSG 191 Query: 312 E 312 + Sbjct: 192 Q 192 >UniRef50_A8VUQ7 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUQ7_9BACI Length = 610 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 11/171 (6%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHE 195 +K +++R D LT VY+R G + +K + +L++ + L+++ +DIDYFK ND YGH+ Sbjct: 439 LKDLSVR---DPLTNVYNRGGFDQQMKAKWTEALQERKELSLLFVDIDYFKRYNDEYGHQ 495 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ--P 253 GD+ L A +Q+ +G+K +V+R GGEEF + +P + A + K + Q P Sbjct: 496 AGDQTLISVAHTLQEALGEKAIVSRYGGEEFVLILPGASEEQAASAAATLLKAIRDQQIP 555 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + Q Y+TVSIG G + TD + + +AD LY +K+ GR+R Sbjct: 556 HSQSQVAPYVTVSIG---GISRIPNETDKPDAFIKQADQALYAAKEAGRDR 603 >UniRef50_C9QDN5 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QDN5_VIBOR Length = 457 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 106/189 (56%), Gaps = 8/189 (4%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLT 176 GI+ + I+V+ AA N+ +++ L A D LT++ +R +E + + + L Sbjct: 264 GISAFIVQRIIVN-DCAARNAYEQKLYLEATTDPLTKLSNRRHFFEIGEQLVQNEMEPLA 322 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 V+++DID+FK INDNYGH+ GD LS FA + + ++ R+GGEEFA+ + +V+ Sbjct: 323 VVIIDIDHFKKINDNYGHQVGDLALSRFAEMCCREIRASDIIGRIGGEEFAIILLNVDLA 382 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVG-SGRASYLTLTDDFNKLMVEADTCLY 295 + E+IRK V F + +L +T+S+GV S +A L L+ AD LY Sbjct: 383 IVNEVTERIRKRVAESNFNSEVSSLSMTISLGVALSDQAHTL------EHLIKRADGALY 436 Query: 296 RSKKDGRNR 304 ++K GRNR Sbjct: 437 QAKVSGRNR 445 >UniRef50_Q1JXC4 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXC4_DESAC Length = 637 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 64/190 (33%), Positives = 107/190 (56%), Gaps = 9/190 (4%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDI 182 I S SV LM + + D +T +++R L + L + +L++ +++ +++ DI Sbjct: 446 IKQSLSVLEAKRLMNTLRESSLRDPMTGLFNRRFLQDQAGHLIAGTLRRKKNIGLLMCDI 505 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK +ND YGH+ GD+VL + IQK V + +V R GGEEF V + + D + +A Sbjct: 506 DFFKQVNDQYGHDAGDQVLKETSAIIQKSVRESDVVVRFGGEEFLVILTDIEAGDAMSVA 565 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 EKIR +E + F + + T+S+GV + Y ++ F + + AD LYR+K+ GR Sbjct: 566 EKIRSNIEDKVFMVGPEKIRKTISLGV----SEYPGDSEGFWQSIKYADVALYRAKETGR 621 Query: 303 NRTSTMRYGE 312 NR +R+ E Sbjct: 622 NR--ALRFEE 629 >UniRef50_A9FZW1 FHA domain protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FZW1_SORC5 Length = 299 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LTQ++++ LYEAL+ ++ +H L ++L DID+FK IND +GH GD VL A Sbjct: 142 DGLTQIHNKRYLYEALEREIIRGRRHERDLAILLFDIDHFKRINDVHGHLAGDFVLKEVA 201 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 R +Q + + AR GGEEFA+ +P + + E +R+ V F +Q ++ +T+ Sbjct: 202 RIVQSRIRRDEVFARYGGEEFAIILPETSIEGAAALGETLRQKVAEHLFVFQADSIRVTI 261 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 S+GV + T D L+ AD LY +K GRNR Sbjct: 262 SVGVALLQEGDRTAND----LIKRADERLYHAKNSGRNR 296 >UniRef50_A8ZXH2 Diguanylate cyclase n=3 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXH2_DESOH Length = 357 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 12/203 (5%) Query: 109 PQMFSARLGI---ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL- 164 P+ + +L I A + + + VS+ I +L +++ A FD LT+VY+R ++E L Sbjct: 151 PEAVTVKLEIIRGAILVLSLLWVSYMANYIANLRRRIKEMASFDALTEVYNRREIFEILD 210 Query: 165 --KSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMG 222 KS S + ++ +LD+D FK +ND YGH+ GD+VL FAR +++ V + V R G Sbjct: 211 REKSFSDRSAIPFSLCILDLDDFKEVNDTYGHQAGDEVLKAFARALRENVRTEDYVGRYG 270 Query: 223 GEEFAVAVPSVNPVDG-LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTD 281 GEEF V + D + +++ K E F L +T SIGV + R S + Sbjct: 271 GEEFLVVFVNFECRDNSVTCVDRLLKVTERLTFPGIADGLKITTSIGVSAYRPS-----E 325 Query: 282 DFNKLMVEADTCLYRSKKDGRNR 304 + ++ AD LY +K G+NR Sbjct: 326 TIDAVIARADQALYEAKAAGKNR 348 >UniRef50_D0I9J2 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9J2_VIBHO Length = 498 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 14/181 (7%) Query: 131 SVAAINSLMKQVALRAD--FDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYF 185 S+A I + L +D D LT VY+R + E + + ++ L+++++D+D F Sbjct: 311 SIAIIRDITDFKRLESDSMHDALTGVYNRRHIEERFEDEVKRAKRYARALSLLVVDLDNF 370 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K++ND GH GDK L V A H++ + + R GG+EF V P ++ D + +AE+I Sbjct: 371 KNLNDTEGHRAGDKGLVVAAEHLRSQLRKHDHIGRWGGDEFVVICPELDRADAIEIAERI 430 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVG--SGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 R+ E Q F W K +T+SIGV S S +T D L EAD LY +K+ GRN Sbjct: 431 RRRFEAQQFPWCHK---MTMSIGVASLSPDTSVMTPRD----LFEEADQALYLAKERGRN 483 Query: 304 R 304 R Sbjct: 484 R 484 >UniRef50_C7R6L5 Diguanylate cyclase n=4 Tax=Gammaproteobacteria RepID=C7R6L5_KANKD Length = 393 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 90/171 (52%), Gaps = 7/171 (4%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYG 193 SL +++ A+ D LT V SR EAL S + + ++D+DYFK +ND +G Sbjct: 224 SLEERLRTAAESDALTGVDSRGHFMQRAEALLQRSRFEKAPFCLFMIDVDYFKRVNDTWG 283 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H CGD++LS A Q + ++ R GGEEF V +P+ N + +A++++ V Sbjct: 284 HTCGDQILSKIAEVCQHSLRPNDIIGRFGGEEFVVGLPNTNTSEAKAVADRLKDNVAALT 343 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + L L+V+IG+ T DD + L+ AD LY K++GRNR Sbjct: 344 LDGEMSELRLSVTIGIAVAD----TEDDDLDVLITRADNMLYVGKREGRNR 390 >UniRef50_B8FCK6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCK6_DESAA Length = 301 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 101/178 (56%), Gaps = 11/178 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKS 187 S+ N ++++A R D LT +Y+ +A+ +++ + L+ +L DID+FK Sbjct: 127 SLQETNRQLQELANR---DGLTGLYNHRYFQDAMTKDFQRAMRYHESLSCVLCDIDFFKK 183 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 ND YGH+ GD VLS AR ++ + D L AR GGEEFA+ + ++AE++R+ Sbjct: 184 FNDTYGHQTGDIVLSTLARIVEDSLRDTDLAARYGGEEFALVLYHTPAAAAFMVAERLRE 243 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVE-ADTCLYRSKKDGRNR 304 VE F +L +T+S+GV A+Y +K ++E AD LY++K++GRN+ Sbjct: 244 SVEQHEFIANDLSLSVTISVGV----ATYPHPDIPDHKTLIECADKALYKAKENGRNQ 297 >UniRef50_C1A5L7 Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5L7_GEMAT Length = 491 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 11/179 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKS 187 S A N+ ++Q+A D LTQ+ +R L E + + +L+ L ++++D+D+FK Sbjct: 316 STMADNARLEQLA---QTDPLTQLLNRRALTERITAEMERALRYDSTLALLMIDLDHFKK 372 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH GD VL + + + + AR GGEEF V +P + + AE+IR Sbjct: 373 VNDTYGHLVGDDVLRDVGQLLGHTIRGSDITARYGGEEFLVLLPETDDAGAVAFAERIRV 432 Query: 248 GVELQPFTWQQ--KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +E PF + L LT SIGV A+ + +D L AD LYR+K +GRNR Sbjct: 433 AMEEHPFARDSMAEPLKLTASIGVAVFPAARIENVED---LFARADAALYRAKAEGRNR 488 >UniRef50_C6NZD9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZD9_9PROT Length = 1149 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/159 (37%), Positives = 90/159 (56%), Gaps = 8/159 (5%) Query: 148 FDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 FD LT + +R+ L E K S + + + +TVM LD+D+FK IND GH GD++L Sbjct: 725 FDHLTGLPNRTQLNERFKYALSLAQRSGEQMTVMFLDLDHFKDINDTLGHSIGDQLLMDV 784 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ +++ + D+ V+R GG+EF + +P + +A K+ + V Q F ++Q L T Sbjct: 785 AKRLKETLRDEDTVSRQGGDEFILILPGTDENGAAHVAAKLMEAVS-QAFQFEQHELVAT 843 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 SIG+ A Y ++F L ADT +YR K DGRN Sbjct: 844 CSIGI----AIYPHDGENFETLSKNADTAMYRVKHDGRN 878 >UniRef50_A6DDG0 Putative uncharacterized protein n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDG0_9PROT Length = 235 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 129 SFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYF 185 SF + N L+++++ FD+LT+ Y+R ++ L + + ++ ++L ++++DIDYF Sbjct: 58 SFETSLKNELLEKLSF---FDYLTEAYNRRAFFKFANILINDAKRENKNLALLMMDIDYF 114 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K IND YGHE GD VL F I+K + L AR+GGEEF + + N +A KI Sbjct: 115 KKINDTYGHEVGDIVLKEFVSLIKKNIRKNDLFARIGGEEFVLLIKINNEYQPYSIANKI 174 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 K +E ++ + T+SIG + TD + +AD LY++ K+ RN Sbjct: 175 LKLIETSQIIYKNYKIKFTISIGGYIFNPN----TDSLESALAKADKALYKA-KERRN 227 >UniRef50_Q31IH0 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IH0_THICR Length = 349 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 16/173 (9%) Query: 146 ADFDFLTQVYSRSGLYE----ALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVL 201 A D LT + +R G E +K + KQ+ +++LDID+FK +ND YGH GD +L Sbjct: 184 AKTDELTNIPNRRGFNEIIENMMKEANEKQSS-FALLVLDIDFFKKVNDTYGHLVGDSIL 242 Query: 202 SVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT- 260 A+ + K +AR+GGEEF +PS + L +A IR+ + +P + Sbjct: 243 RYLAKSLHNETKGKDSIARIGGEEFVAILPSTSYDSALKLANTIREKIASRPLHVKNNAN 302 Query: 261 -LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 + LT+SIGV L + + L AD CLY +K +GRNR YGE Sbjct: 303 PITLTISIGVA-----MFQLNETLDSLFTRADKCLYMAKSNGRNRV----YGE 346 >UniRef50_C7I2H1 Diguanylate cyclase n=1 Tax=Thiomonas intermedia K12 RepID=C7I2H1_THIIN Length = 523 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 102/187 (54%), Gaps = 9/187 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY----EALKSPSLKQTQHLTVML 179 C + ++A L +Q+ A D LT + +R G + AL++ Q +ML Sbjct: 338 CIVTGMVEISAQKHLEQQLRALAHTDPLTGLQNRRGFFAMVEHALRTRPAGQPGP-CIML 396 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +D+D+FK IND YGH GD++L FA+ + ++ + + ARMGGEEF + + + L Sbjct: 397 IDLDHFKQINDRYGHPVGDEILVEFAQVVLSLLREGDVFARMGGEEFCILLAHMRASQAL 456 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE++R+ V PF + L++S+G+ A ++ ++++ AD +YR+K+ Sbjct: 457 EVAERVREFVAAHPFQTSAGVVRLSLSLGIAGCDAPVQSI----DRVLSMADQAMYRAKQ 512 Query: 300 DGRNRTS 306 GRNRT Sbjct: 513 GGRNRTE 519 >UniRef50_D0SXM5 Predicted protein n=2 Tax=Acinetobacter lwoffii SH145 RepID=D0SXM5_ACILW Length = 440 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 7/162 (4%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQHLT--VMLLDIDYFKSINDNYGHECGDKVLSV 203 A D LTQ+Y+R + + + +H + +++ D+D+FK+IND+YGH+ GD+VL + Sbjct: 248 AHTDDLTQLYNRRHFVDMAERSIHQWPKHASSCLLMFDVDHFKNINDSYGHDVGDRVLQL 307 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP-FTWQQKTLY 262 A +K + ++AR GGEEF + D L++AE+IR ++ Q + T+ Sbjct: 308 IAEVTRKEMRHSDVLARFGGEEFIALLEDTQLQDSLVIAERIRCAIQKQYIYVEPNHTIR 367 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 T+SIGV + L D L+ +AD LY++KK GRNR Sbjct: 368 FTISIGVAELESHTQPLED----LIKQADIALYQAKKSGRNR 405 >UniRef50_C6CQG0 Diguanylate cyclase n=7 Tax=Enterobacteriaceae RepID=C6CQG0_DICZE Length = 491 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 8/174 (4%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ-TQHLT--VMLLDIDYFKSIND 190 I + +++ L A D LT + +R ++ +KQ TQH T ++L+D+DYFK IND Sbjct: 318 TIGAYQRRLELMATTDKLTGLMNRQAFEYVFRTLRIKQSTQHRTFSIILIDLDYFKKIND 377 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD+VL AR IQ+ + R GGEEF + + + +AEKIR+ + Sbjct: 378 QYGHHVGDRVLVRTARLIQRTIRKTDSACRWGGEEFVLLLADCSRSQAHFIAEKIRRAIR 437 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + Q + + LT+S G+ + + L+ AD LY++K+ GR++ Sbjct: 438 FALVSHQHQVINLTISCGIAESHPG-----ESIDHLVQRADNALYQAKRQGRDQ 486 >UniRef50_A3Y6S3 PAS:GGDEF protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y6S3_9GAMM Length = 299 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/135 (39%), Positives = 83/135 (61%), Gaps = 6/135 (4%) Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 Q H +++ LDIDYFK IND YGH GD VL+ F+ +K + + +AR+GGEEF + + Sbjct: 165 QNIHYSLLALDIDYFKRINDKYGHLTGDYVLASFSTLCEKNIRSQDKIARIGGEEFCIIL 224 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTD-DFNKLMVE 289 P+ + V + +AEK+R+ + F + + +TVSIGV S + ++D D+ ++ Sbjct: 225 PATDKVGAIEVAEKLRRAISNARFKQDEHEIAVTVSIGV-----SQVKMSDYDYVAMLKR 279 Query: 290 ADTCLYRSKKDGRNR 304 AD LYR+K GRN+ Sbjct: 280 ADENLYRAKHQGRNQ 294 >UniRef50_A9KNZ0 Diguanylate cyclase with GAF sensor n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KNZ0_CLOPH Length = 573 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 108/198 (54%), Gaps = 11/198 (5%) Query: 110 QMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGL---YEALKS 166 + F+ + + ++V+ A++ S M+Q+A+R D LT +Y+R L E Sbjct: 360 EYFNGNIIFFETVVAQLLVAIHNASLYSKMQQMAIR---DSLTGIYNRGQLNVILEQYTK 416 Query: 167 PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVG-DKGLVARMGGEE 225 + +Q + L+V LLDID FK IND YGH GD+V+ + A +Q++ G+ AR GGEE Sbjct: 417 RASEQNKSLSVALLDIDLFKKINDTYGHLFGDEVIKMVASKLQEVANCFHGIAARYGGEE 476 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 F + +P + +D + +++ ++ + + + + VS+G+ S + L+ + Sbjct: 477 FVIVLPDIGILDFYHIVTSLKETIDTTTLYFNEDEINVKVSVGISSYPETSLSC----QQ 532 Query: 286 LMVEADTCLYRSKKDGRN 303 L+ AD +Y SK++GRN Sbjct: 533 LLNRADGAMYYSKRNGRN 550 >UniRef50_C6X759 Diguanylate cyclase/phosphodiesterase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X759_METSD Length = 765 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 9/164 (5%) Query: 145 RADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVL 201 +A++DFLT + +R ++ L SL+ Q L +M LD+D FK IND GH GDK+L Sbjct: 319 QANYDFLTGLPNRPMFHKQLAEEIHKSLQHQQPLVLMFLDLDNFKQINDQLGHSIGDKLL 378 Query: 202 SVFARHIQKIVGDKGLVARMGGEEFAVAVPSV-NPVDGLLMAEKIRKGVELQPFTWQQKT 260 I + D L+AR+GG+EF + + +V N + E+I + V L PFT + Sbjct: 379 VETGARIAAVARDCTLLARLGGDEFTIVLSNVQNQQQVEWLCERILRQVSL-PFTIENHV 437 Query: 261 LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +Y+T SIG+ AS+ + D LM AD +Y +K+ GRNR Sbjct: 438 VYVTTSIGI----ASFPEHSRDVETLMKYADQAMYEAKRLGRNR 477 >UniRef50_Q39S35 Diguanylate cyclase with GAF sensor n=2 Tax=Geobacter RepID=Q39S35_GEOMG Length = 686 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 27/206 (13%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVAL---RADF-------DFLTQVYSRSGLYEALKS 166 GI T ++++F+ A S+M + AL RADF D LT +Y+R L ++ Sbjct: 466 GIFTENDLNLLITFADHA--SIMIERALSIERADFLEQLSITDPLTGLYNRRFLKRRMEE 523 Query: 167 P---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 S++Q LTVML+D+D FK ND GH GD+ L AR + +V R GG Sbjct: 524 ELARSIRQNLSLTVMLIDLDNFKIYNDLCGHLAGDRALKKMARILSDTARQMDVVTRYGG 583 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK--TLYLTVSIGVGSGRASYLTLTD 281 EEF + +P + + L +AE+IR+ +E + F+ ++ LT SIGV S + Sbjct: 584 EEFCIILPGTSKKESLFVAERIRREIEGEEFSHEENLPQGRLTASIGVSS-------FPE 636 Query: 282 DFN---KLMVEADTCLYRSKKDGRNR 304 D N L+ AD LYR+K +GRNR Sbjct: 637 DGNVEAVLVKAADVALYRAKSEGRNR 662 >UniRef50_B7KWW4 Diguanylate cyclase n=5 Tax=Methylobacterium RepID=B7KWW4_METC4 Length = 417 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 12/164 (7%) Query: 146 ADFDFLTQVYSRSGLYEALK-----SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 AD D LT + +R GL+ AL SPS + ++L DID+FK+IND YGH+ GD Sbjct: 220 ADTDPLTGLANRRGLFAALSQRAGLSPSPPRC---AILLADIDHFKAINDTYGHDGGDAA 276 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L FA ++ ++ LVAR GGEEF V + + +AE++RK QPFT Sbjct: 277 LVGFAERLRGVMRKDDLVARWGGEEFLVVLDQADATAAATVAERLRKSAAGQPFTVNGAA 336 Query: 261 LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + +T SIGV A + + + AD LY +K+ GRNR Sbjct: 337 VTVTASIGVAVVAAG----EERIDAALSRADAALYAAKRAGRNR 376 >UniRef50_C1D6I3 Diguanylate cyclase n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6I3_LARHH Length = 350 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 91/160 (56%), Gaps = 4/160 (2%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +Y+R + L+ + + +H L ++LD D+FK IND +GH+ GD VL V A Sbjct: 183 DPLTGLYNRRYFEQRLQEEAQRTRRHGDPLACLMLDADHFKRINDTWGHQAGDVVLKVLA 242 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 R +++ + + AR+GGEEFAV +PS L+AE+IR + +P + L V Sbjct: 243 RRVRQQLRGCDVAARIGGEEFAVLLPSTPVRHVQLVAERIRLAIAGEPVHVSPDCV-LQV 301 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 S+ +G+ + +LM AD LY++K++GRNRT Sbjct: 302 SVSLGAAMLAPGAADISPERLMARADAALYQAKRNGRNRT 341 >UniRef50_A7JY97 Ggdef domain protein n=8 Tax=Vibrio RepID=A7JY97_VIBSE Length = 682 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 54/138 (39%), Positives = 84/138 (60%), Gaps = 5/138 (3%) Query: 167 PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEF 226 P Q+ +++ L+D+DYFK +ND YGH GD VL+ A+ +++ V + +VAR GGEEF Sbjct: 541 PKKPQSGPVSLALIDVDYFKQVNDTYGHVFGDAVLTGVAKVLEETVRENDIVARFGGEEF 600 Query: 227 AVAVPSVNPVDGLLMAEKIRKGVELQPF-TWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 V +P+ + D L+ AE++R + L F T Q + + +T S GV + S + +F Sbjct: 601 VVVMPNTDHEDSLITAERLRSALSLHGFVTEQNEEVRVTCSFGVVTTEDSEM----NFKS 656 Query: 286 LMVEADTCLYRSKKDGRN 303 L +AD LY++K DGRN Sbjct: 657 LCDQADKLLYQAKADGRN 674 >UniRef50_Q7CYR0 GGDEF family protein n=4 Tax=Rhizobium/Agrobacterium group RepID=Q7CYR0_AGRT5 Length = 356 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 97/176 (55%), Gaps = 17/176 (9%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRS-GLYEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 +A +SL + RA D L VY S GL Q+ T++LLDID+FK IND Sbjct: 175 IANTDSLTRLSNRRAFDDRLASVYDSSIGL------------QYTTLVLLDIDHFKRIND 222 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 +GH GDK+L+ A I+ V G VAR GGEEFA+ + P + ++M E+IR +E Sbjct: 223 TFGHPVGDKILATVASVIRANVRKDGFVARSGGEEFAIILDGNTPEEVMVMCERIRLSLE 282 Query: 251 LQPF-TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 PF + Y TV+I +G A+ + + ++L ADT LY +K+ GRNR+ Sbjct: 283 STPFRNSRSGADYGTVTISIGFASAARAS---NPSELYGHADTALYHAKETGRNRS 335 >UniRef50_UPI00016C5356 FHA domain protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5356 Length = 294 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 6/160 (3%) Query: 148 FDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LTQ++++ L E L+ ++ +H L+V+ LDID FK+IND+ GH CGD +L Sbjct: 135 LDGLTQIHNKRYLDEFLEREVVRSQRHRRPLSVLALDIDKFKTINDSMGHLCGDFLLREL 194 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A +++ V + L AR GGEEF V + D L +AE++R+ V F ++ + +T Sbjct: 195 AGVVRESVRQEDLFARAGGEEFVVVLVETTKDDALHVAERLREAVAAHEFRFEATPIKMT 254 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +SIG+ S +T + L +AD LY +K+ GRNR Sbjct: 255 ISIGLASTVGDEVTTP---HHLRQDADQKLYEAKRTGRNR 291 >UniRef50_C6RM00 Diguanylate cyclase n=5 Tax=Acinetobacter RepID=C6RM00_ACIRA Length = 527 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 98/174 (56%), Gaps = 8/174 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 S+ +S + ++ + D LTQ+++R G+ E + H +++L+DID FK +ND Sbjct: 358 SIEKFSSKIDEMNFHINSDALTQLFNRRGM-EIFVKEMIDSDIHFSILLIDIDRFKRVND 416 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH+ GD+VL + A+ IQ+ + L R GGEEF V +P+ N + AE+ R+ VE Sbjct: 417 TYGHDIGDEVLKILAKLIQENFRKEDLCCRYGGEEFIVVIPNNNKQEIYESAERFRRIVE 476 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + +T+SIG+ AS+ ++F +++ AD LY +K +GRN+ Sbjct: 477 AFEINNVGR---ITISIGI----ASWPDSAEEFAQVLKIADNNLYYAKNNGRNQ 523 >UniRef50_A7GXF8 3-deoxy-d-manno-octulosonic-acid transferase n=8 Tax=Campylobacterales RepID=A7GXF8_CAMC5 Length = 422 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 103/190 (54%), Gaps = 11/190 (5%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVML 179 IC V+ ++ A+ ++ Q+A A+ DFLT VY+R Y+ + + + + + + + Sbjct: 241 IC--RVNNTIEAMENI-NQIANFANRDFLTSVYNRRYFYDDMTQYLAKAEETAEPYAIAM 297 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +DID+FK+IND YGH+ GDKVL A+ + +VAR GGEEF V + +++ + + Sbjct: 298 IDIDHFKNINDTYGHDSGDKVLQFLAKKLVDDTKGNDIVARFGGEEFCVVLKNISQEEAV 357 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +R + + ++ + TVSIGV R+ Y ++L+ AD LY +K+ Sbjct: 358 KFFVNLRAKIANSKISLKKNVINFTVSIGVVFNRSDYR-----LDELLELADEALYIAKE 412 Query: 300 DGRNRTSTMR 309 GRNR + Sbjct: 413 SGRNRVEVAK 422 >UniRef50_B9JD30 Sensory box/GGDEF family protein n=12 Tax=Rhizobium/Agrobacterium group RepID=B9JD30_AGRRK Length = 466 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 93/167 (55%), Gaps = 9/167 (5%) Query: 149 DFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT V +R GL + L + + + + V+L D+D+FK+IND YGH+ GD VL+ FA Sbjct: 268 DMLTGVLNRRGLQDYLPLVVKKAARGSHKIAVLLFDLDHFKAINDRYGHQTGDTVLAEFA 327 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 R ++ + + G RMGGEEF +P + + +AE +R V P Q + TV Sbjct: 328 RIGRQFIPESGAFGRMGGEEFIAFIPVADQAEAEAIAETVRAEVCRAPLLAGQSFVSATV 387 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 S+G+ A + ++++L+ AD LY +K+ GRN T+ +GE Sbjct: 388 SVGL----AIMPCGSANWDRLVSAADRALYAAKRAGRN--CTVVFGE 428 >UniRef50_B8DLP9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLP9_DESVM Length = 730 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 8/162 (4%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R EAL+ + ++ L ++ +D+D FK +ND +GH GD+VL Sbjct: 550 ATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALISIDVDRFKRVNDTWGHAVGDEVLR 609 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A + V D V R+GGEEFAV +P P + + +AE++R GVE P L Sbjct: 610 ALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAMAVAERLRAGVEAAPLLTTAGPLT 669 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +T+S+GV S D + L+ EAD LYR+K GRNR Sbjct: 670 VTLSLGV-----SASPPCDGADTLLREADRALYRAKAGGRNR 706 >UniRef50_Q9KAQ3 Response regulatory protein (Sensory transduction system) n=1 Tax=Bacillus halodurans RepID=Q9KAQ3_BACHD Length = 314 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 8/159 (5%) Query: 149 DFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 DFLT + +R + E +++ S++ + T+ ++DID+FK+IND YGH+CGD VL F Sbjct: 155 DFLTNLMNRRDMQEKIRAEINRSIRHGRSFTLAIVDIDFFKNINDTYGHDCGDHVLKHFV 214 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 ++ V V+R GGEEF + P +G EKIR+ + P ++ ++ +T Sbjct: 215 STLKNSVRSSDYVSRWGGEEFLLLFPETKLEEGKRACEKIRQKINESPVIYKGMSISITA 274 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + G+ R S +L+ AD LY+ KK G+N+ Sbjct: 275 TFGISEYRPSVR-----IEELIKAADDALYKGKKTGKNQ 308 >UniRef50_A3WKH9 Serine/threonine kinase with two-component sensor domain n=1 Tax=Idiomarina baltica OS145 RepID=A3WKH9_9GAMM Length = 1632 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 96/177 (54%), Gaps = 7/177 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS--LKQTQH-LTVMLLDIDYFKS 187 +A+ + + KQ+ A+ D LTQ+ +R L+ K+ H V+++DID FK Sbjct: 1454 EMASHDKVTKQLQHLANTDALTQLPNRRFFMSELQQSHDLFKRKGHQAAVVMMDIDSFKV 1513 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH GD+VL A+ V + AR+GGEEFA+ + + L +AE++R+ Sbjct: 1514 INDRYGHSAGDEVLKALAKQFNHAVRMNDIAARIGGEEFALLIRDADMPQVLAIAERLRQ 1573 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +EL + + TVSIG+ + + T D+F ++ AD LYR+K G+NR Sbjct: 1574 AIELDSIVHSGEEVDYTVSIGI----SLFETQDDEFESILNRADRALYRAKSLGKNR 1626 >UniRef50_Q47FH1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FH1_DECAR Length = 820 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 90/167 (53%), Gaps = 14/167 (8%) Query: 146 ADFDFLTQVYSRSGLYEALKSP--SLKQTQH-LTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT++ +R E L+ LK+T V ++DID+FK IND YGHE GD VL Sbjct: 663 AHQDALTKLPNRLAANERLRQEFLRLKRTGSPYCVFMMDIDHFKMINDTYGHETGDHVLE 722 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 FA + + VAR GGEEF +P ++ AEK+R + + F Sbjct: 723 HFAVTLTGALRATDFVARFGGEEFIALMPDTEIEGAMVAAEKVRIAIHQEKFP---VVGC 779 Query: 263 LTVSIGVGSGRASYLTLTDDFN--KLMVEADTCLYRSKKDGRNRTST 307 +TVSIGVG+ R T+D N + + AD LYRSKKDGRNR S+ Sbjct: 780 VTVSIGVGNSR------TEDANEDETVRRADAALYRSKKDGRNRVSS 820 >UniRef50_A3QI98 Diguanylate cyclase n=1 Tax=Shewanella loihica PV-4 RepID=A3QI98_SHELP Length = 401 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 10/178 (5%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 A+ L++++ +AD D+LT +++R + E L L+ Q +++L D+D+FK IND Sbjct: 216 ALTRLVQKMRQQADRDYLTGLWNRRAMQQQLEQLHQRWLRDGQAYSLILFDLDFFKQIND 275 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 +GH GD VL A+ I K+ + R+GGEEF + +P + ++A+K+++ + Sbjct: 276 KFGHSAGDAVLVKTAQQIGKVTRAMDIFCRLGGEEFLLVLPGTDGEVAEIIAQKLQQALR 335 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF-NKLMVEADTCLYRSKKDGRNRTST 307 WQ + ++ S G+ + T T D + L+ AD +YR+K+ GR+R T Sbjct: 336 QSSLNWQGSLIPISASFGIVT------TATGDTPDSLLALADKAMYRAKETGRDRCCT 387 >UniRef50_B5JX81 Diguanylate cyclase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX81_9GAMM Length = 384 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 25/286 (8%) Query: 36 QMMPAIALIVSVIASV--VIGGAGSLAFPLPALIWCAVR------YTPQVTCLLTFVTGA 87 Q A+ ++++ A V V+ G + L I R +T + L + A Sbjct: 103 QFFVAVNMVLAYYAGVFSVVSGVALVGGSLTGFILFNERVVYGGLFTGALATLALIILSA 162 Query: 88 VEIVLVANSVIDISVGSPFSIPQMFSARL-GIATMAICPIMVSFSVAAINSLMK---QVA 143 +E++ A SVI+ + G+P + L G++T I ++V+ + +AI + +V Sbjct: 163 LEVIPYA-SVIETN-GTPLHHNATWLILLLGLSTPYI-GLLVAMNSSAIRRWRQRESEVR 219 Query: 144 LRADFDFLTQVYSRSGLYE--ALKSPSLKQTQH--LTVMLLDIDYFKSINDNYGHECGDK 199 + D LTQV +R L E L+ +++ H L+++++D+D+FKSIND +GH GD+ Sbjct: 220 QLSTTDPLTQVANRRHLLERLNLEISRCERSGHSELSLLMMDLDHFKSINDEHGHLFGDE 279 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ- 258 L V AR +++ + LV R GGEEF + +P P L +AE+ R+ +E + Sbjct: 280 ALRVTARVLREQSRNTDLVGRYGGEEFCLLLPDTGPQGALQIAERCRQALEQADIDREDG 339 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + L++T SIG+ A+Y + D L+ AD LY++K+ GRNR Sbjct: 340 EVLHITTSIGL----ATY-QMGDTNESLLHRADEALYQAKEQGRNR 380 >UniRef50_B9L7P4 Diguanylate cyclase/phosphodiesterase domain 1 n=1 Tax=Nautilia profundicola AmH RepID=B9L7P4_NAUPA Length = 614 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 11/165 (6%) Query: 145 RADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 +++FD LTQ+Y+R G E + + +K+T +++ DID+FK+INDNYGHE GD VL+ Sbjct: 461 KSEFDALTQIYNR-GTIEKILNKKIKETDG-SLIFFDIDHFKNINDNYGHEKGDLVLASL 518 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 AR IQK + R GGEEF + +P +AEK+RK +E F L +T Sbjct: 519 ARIIQKNIRSSDYFGRWGGEEFVIILPQAPYEIAYKIAEKLRKIIEQTDFD----GLNIT 574 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 +S+GV + D+ ++ + D LY +K GRN+ + Sbjct: 575 ISLGVSEFKKG-----DNPEVVLKKVDEALYEAKNSGRNQVKGKK 614 >UniRef50_Q2RLY1 Diguanylate cyclase (GGDEF domain) n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLY1_MOOTA Length = 357 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 6/157 (3%) Query: 149 DFLTQVYSRSGLYEALKS--PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAR 206 D LT +Y+ +A + S +Q ++L V++LDIDYFK IND YGH G++VL+ A Sbjct: 189 DDLTGIYNYRYFVQAFSNLLNSRQQPRYLAVLMLDIDYFKEINDAYGHLTGNRVLAELAT 248 Query: 207 HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVS 266 +++ ++ +V R GGEEFA+ +P + L +AE+IRK + F + +++TVS Sbjct: 249 ILKECTREQDVVTRFGGEEFALILPDTDYHGALQVAERIRKAIAEHTFQAEGTAIHVTVS 308 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 GV A + D ++ AD LY++K GRN Sbjct: 309 AGV----AVWPVDGTDKKDIIARADRALYQAKTTGRN 341 >UniRef50_C6DCR6 Diguanylate cyclase n=6 Tax=Pectobacterium RepID=C6DCR6_PECCP Length = 532 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 102/178 (57%), Gaps = 8/178 (4%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSIN 189 F ++ + +++L+A D LT + +R G+YE+++ L ++ + +++DID+FK +N Sbjct: 350 FGTLLLHKRIGKLSLQAHTDPLTGLLNRRGIYESIEL-ILPKSNQVAAIVIDIDHFKRVN 408 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D YGH GD V+ + A+ I++ + L+ R GGEEF +P + + +AE++RK V Sbjct: 409 DTYGHNIGDDVIRLLAKSIKQGSRESDLICRTGGEEFLALLPDTDMKQAVDIAERLRKKV 468 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 E P + +T+S+GV ++ + + ++ AD LY++K +GRNR T Sbjct: 469 EKMPLPIPEN---ITISLGV----TCFIPGAEQIDNVLKIADDALYQAKHEGRNRVVT 519 >UniRef50_C8X2S3 Diguanylate cyclase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2S3_DESRD Length = 387 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 7/173 (4%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSIND 190 A+ S +++ L A DFLT + +R G +EA + ++ L+V+LLD+D+FK +ND Sbjct: 205 ALESTVQENRLLARTDFLTDLPNRRGFFEAGAKEIRRAHRYGRPLSVLLLDLDHFKKVND 264 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH+ GD VL+ F + + + + L+AR+GGEEFAV +P + +AE +R+ VE Sbjct: 265 VYGHDVGDHVLAQFGQKCRGRLREHDLMARLGGEEFAVLLPETPVAEASQVAEGLRRFVE 324 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + +TVSIGV D ++++ DT LY +K+ GRN Sbjct: 325 GSSLAGVLEAGEVTVSIGV----CELAPQEDSLSEVLKRVDTALYMAKQAGRN 373 >UniRef50_B2A6L1 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6L1_NATTJ Length = 340 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 102/176 (57%), Gaps = 12/176 (6%) Query: 146 ADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LTQ+ +R E ++ + ++ L+++LLDIDYFK+ ND YGH+ GD+ L Sbjct: 164 ATIDELTQLANRRLFDETMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLK 223 Query: 203 VFARHIQKIVGDKG-LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV-ELQ-PFTWQQK 259 A+ ++ ++ G AR GGEEFAV +P + +AEKIR+G+ EL+ P + Sbjct: 224 AIAKKLKFLMMRPGDFAARYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKV 283 Query: 260 TLYLTVSIGVGSG-----RASYLTLTDDFNKLMVE-ADTCLYRSKKDGRNRTSTMR 309 Y+TVS+GV S + TDD K+++E AD LY++K +GRN + M+ Sbjct: 284 AQYVTVSLGVASADLKNCQGGRDQATDDEIKILIEHADEALYKAKDNGRNTIALMQ 339 >UniRef50_A1TWC4 Diguanylate cyclase n=2 Tax=Acidovorax RepID=A1TWC4_ACIAC Length = 572 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 92/173 (53%), Gaps = 8/173 (4%) Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNY 192 + L+ Q+ ++ DFLT + +R + A + + + +Q + +MLLD+D FKS ND Sbjct: 399 DGLIAQLREQSLTDFLTGLPNRRAFFAAARERIAQARQQRFDVALMLLDVDLFKSFNDRA 458 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH GD+ L AR ++ + LVAR GGEEF V + +G AE++R +E Sbjct: 459 GHAAGDEALRAVARAVRHTLRPGDLVARYGGEEFVVLLGPCAGREGAACAERLRHAIETA 518 Query: 253 PFTWQQ-KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 P + LT S+GV + + L + L+ EADT LYR+K GRNR Sbjct: 519 PVVLPSGERFRLTASVGVAVSQRHGMVL----DHLLSEADTALYRAKDRGRNR 567 >UniRef50_A8UV88 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UV88_9AQUI Length = 475 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 5/146 (3%) Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 S + + L+++++DID FKSINDNYGH+ GD VL A I+K V + AR GGEEF Sbjct: 332 SKRYREPLSLLMMDIDNFKSINDNYGHDVGDLVLKKLAEVIRKNVRTSDIPARFGGEEFV 391 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 V +P + L++AE+IR K ++ +VSIG+ S L+ DD + L+ Sbjct: 392 VLLPRTDEKGALMVAERIRNEFRNSSVKVDGKDIWTSVSIGL-----SVLSEEDDIDSLI 446 Query: 288 VEADTCLYRSKKDGRNRTSTMRYGEE 313 +AD LY++K+ G++R R ++ Sbjct: 447 KKADEALYQAKRSGKDRVVIYREEDQ 472 >UniRef50_Q4ZZT3 GGDEF n=5 Tax=Pseudomonas syringae group RepID=Q4ZZT3_PSEU2 Length = 690 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 11/169 (6%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHE 195 +Q AL D LT + +R+ E L+ + + L V +LD+D+FK IND YGH Sbjct: 526 QRQKAL---IDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDGYGHL 582 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GDKVL + A + K + +AR GGEEF + +P+ P GL + +++R VE PF Sbjct: 583 AGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVESCPFH 642 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 ++ + + +TVSIG+ + R S + T + AD LY++K++GRNR Sbjct: 643 FKGERVTITVSIGMTAFRPSERSDT-----AIKRADQALYKAKENGRNR 686 >UniRef50_D1U463 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U463_9DELT Length = 974 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 16/195 (8%) Query: 125 PIMVS---FSVAAINSLMKQVALRADFDFLTQVYSRSG---------LYEALKSPSLKQT 172 PIMV + I+ + ++V L + L S +G L E +++ Sbjct: 783 PIMVQGNQLLYSVIHDITERVRLEREMKRLATTDSLTGAANRHEFFRLAELELRRAMRYG 842 Query: 173 QHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPS 232 L V++LDIDYFKSIND +GH+ GD VL + ++ + D + R+GGEEFA +P Sbjct: 843 HSLAVLMLDIDYFKSINDTHGHQTGDAVLKALSALVRTTLRDTDIFGRLGGEEFAAVLPE 902 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 + G+L+A+++R+ + + + TVSIG+ R S + D N+ AD Sbjct: 903 TDLAGGVLVADRLRRELGALKVRLRDIEVMFTVSIGLTETRKSERLIDDAINR----ADE 958 Query: 293 CLYRSKKDGRNRTST 307 +Y++K+ GRNR + Sbjct: 959 AMYKAKRMGRNRVES 973 >UniRef50_C4XS30 GGDEF domain protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XS30_DESMR Length = 498 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 6/171 (3%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHEC 196 QV +RAD D LT++++R E L + ++ ++++++DID+FK IND YGH Sbjct: 313 NQVKIRADHDGLTRIHNRRAFDERLIDELRRHQRYRHAMSLLMVDIDHFKGINDRYGHLV 372 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD VL + + + AR GGEEF V +P ++AE++R + F Sbjct: 373 GDHVLREVGSILSETLRSTDFTARYGGEEFVVILPQTAEEQARILAERLRGAIAEARFVH 432 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + +TVSIGV + + LT D L+ +AD LY++K GRN+ T Sbjct: 433 DGEDFSITVSIGVSALQPGALTRRKD---LLEKADKALYQAKHLGRNQVCT 480 >UniRef50_A3WM11 Signaling protein with a sensor domain and GGDEF domain n=1 Tax=Idiomarina baltica OS145 RepID=A3WM11_9GAMM Length = 518 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 149 DFLTQVYSRSGLYEALK--SPSLKQTQH-LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT++ +R+ L E ++ K+T+ +++ +LDID+FK INDN+GH GDK L V A Sbjct: 355 DSLTKLPNRAALEERMRVEEQRFKRTKEPVSIAVLDIDFFKRINDNFGHSAGDKTLQVIA 414 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 ++K V + V R GGEEF V P+ D EK + + PF ++ + + +TV Sbjct: 415 SMLRKAVNESDFVCRYGGEEFVVLFPNTPIADAQARLEKACERIRNIPFKFRSEDIRITV 474 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 S+G+ + +LT F AD LY +KK GRN+ Sbjct: 475 SVGIAELQQVNQSLTSLFET----ADNALYEAKKTGRNK 509 >UniRef50_Q7MFB4 GGDEF family protein n=2 Tax=Vibrio vulnificus RepID=Q7MFB4_VIBVY Length = 387 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 92/167 (55%), Gaps = 12/167 (7%) Query: 141 QVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECG 197 Q +LR D LT +Y+R + E + S + + L++++LD+D+FK IND YGH+ G Sbjct: 223 QTSLR---DTLTNIYNRRAMEEMIPRELSRASRLGAELSIIILDLDHFKRINDQYGHQVG 279 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D+ LS + + + + + R+GGEEF V +P +L+AEK+R+ + F + Sbjct: 280 DQTLSGIGQLLTSQLRKQDISFRIGGEEFLVVLPDTPIESAVLVAEKLRQKIAETRFAPK 339 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 Q+ + T S GV L DD++ LM AD LY +K GRNR Sbjct: 340 QRETW-TASFGVAQ-----LITGDDWDALMKRADAALYLAKHKGRNR 380 >UniRef50_A3SMA4 Diguanylate cyclase, putative/response regulator n=1 Tax=Roseovarius nubinhibens ISM RepID=A3SMA4_9RHOB Length = 471 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 5/132 (3%) Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 VML D+D+FK+IND YGH GD+VL A H + I+ D +VAR+GGEEF + P V P Sbjct: 330 VMLADLDFFKNINDKYGHSGGDQVLRQVADHFRAILRDCDMVARIGGEEFLLVCPGVTPD 389 Query: 237 DGLLMAEKIRKGVELQ--PFTWQQKTLYLTVSIGVGSGRASYLTLT---DDFNKLMVEAD 291 + A++I + + P T + +++TVSIG+ GRA L+ + +L+ AD Sbjct: 390 EARQTADRICREIADTAIPLTGYSQPVHITVSIGLVMGRAGRGELSPTGGESERLLARAD 449 Query: 292 TCLYRSKKDGRN 303 LY SK GRN Sbjct: 450 AALYASKAHGRN 461 >UniRef50_A8VQE2 Putative diguanylate cyclase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VQE2_9BACI Length = 301 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 11/178 (6%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDN 191 + L+ Q L A D LT+VY++ + E L + +L + Q +++ DID+FKS+ND Sbjct: 128 MKRLLDQANLAAVTDELTRVYNKRYILEKLPADLTLALAEQQPFGLIVADIDHFKSVNDT 187 Query: 192 YGHECGDKVLSVFARHIQKIVGDKG-LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD++L FA ++ D+ AR GGEEF V +P + L +AE++R +E Sbjct: 188 YGHLAGDQILREFAAVLKDTCLDQADWTARFGGEEFVVCLPGKDRDTVLAVAERMRARIE 247 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTD--DFNKLMVEADTCLYRSKKDGRNRTS 306 Q F + + + LT S GV + L D D+ L+ AD LY+SK+ GRNR + Sbjct: 248 EQVFHYDGQAITLTSSFGVYA-----LAPGDVIDYETLLKRADQHLYQSKRTGRNRVT 300 >UniRef50_A0XYM4 Putative uncharacterized protein n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0XYM4_9GAMM Length = 302 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 84/156 (53%), Gaps = 11/156 (7%) Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 D LTQVY+R YE +++ + + V+++DID+FKSIND +GH+ GDKVL FA I Sbjct: 151 DDLTQVYNRRCFYEYVENET---DESYAVIIIDIDHFKSINDTFGHDKGDKVLKAFASKI 207 Query: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIG 268 + D + AR+GGEEFA +P+ AE + T LY + SIG Sbjct: 208 DALFEDGNIFARIGGEEFAGYLPNCTLEQMQAFAESVLASARTIEVT---DELYTSASIG 264 Query: 269 VGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 V + + F+ +M AD LY++K GRN+ Sbjct: 265 VAKRFKN-----ESFDSVMKRADQALYKAKNSGRNQ 295 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8XAZ4 Uncharacterized protein yneF n=65 Tax=Enterobact... 471 e-131 UniRef50_D2TIF8 Putative signal transduction protein n=2 Tax=Ent... 421 e-116 UniRef50_A8A075 Diguanylate cyclase (GGDEF) domain protein n=2 T... 414 e-114 UniRef50_B1JAS6 Diguanylate cyclase n=5 Tax=Pseudomonas RepID=B1... 316 7e-85 UniRef50_C8QCH2 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b Re... 313 4e-84 UniRef50_C6CDM3 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech... 302 1e-80 UniRef50_D0IXN6 Diguanylate cyclase n=2 Tax=Comamonas testostero... 299 1e-79 UniRef50_A0P392 GGDEF domain protein n=1 Tax=Labrenzia aggregata... 297 4e-79 UniRef50_D0FTB2 Conserved uncharacterized protein YneF n=3 Tax=E... 295 1e-78 UniRef50_C6CM30 Diguanylate cyclase n=1 Tax=Dickeya zeae Ech1591... 290 3e-77 UniRef50_D2C311 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech... 288 2e-76 UniRef50_A8GAZ5 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GAZ... 287 5e-76 UniRef50_D0S942 Response regulator n=2 Tax=Acinetobacter RepID=D... 280 5e-74 UniRef50_B7GZC2 Uncharacterized protein yneF n=10 Tax=Acinetobac... 270 4e-71 UniRef50_A8GES9 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GES... 268 1e-70 UniRef50_C6DKF8 Diguanylate cyclase n=5 Tax=Pectobacterium RepID... 268 2e-70 UniRef50_A9C2H0 Diguanylate cyclase n=2 Tax=cellular organisms R... 268 2e-70 UniRef50_C6RK39 Diguanylate cyclase n=2 Tax=Acinetobacter radior... 267 3e-70 UniRef50_C3JIZ7 Diguanylate cyclase n=2 Tax=Rhodococcus erythrop... 263 4e-69 UniRef50_C6DJJ8 Diguanylate cyclase n=1 Tax=Pectobacterium carot... 259 1e-67 UniRef50_D0KF92 Diguanylate cyclase n=1 Tax=Pectobacterium wasab... 253 5e-66 UniRef50_C3JRE9 Diguanylate cyclase n=2 Tax=Rhodococcus erythrop... 252 1e-65 UniRef50_Q2RNW0 Putative diguanylate cyclase (GGDEF domain) n=1 ... 250 6e-65 UniRef50_C7LVZ4 Diguanylate cyclase n=1 Tax=Desulfomicrobium bac... 249 9e-65 UniRef50_Q2SME0 Response regulator containing a CheY-like receiv... 249 1e-64 UniRef50_A8FZ07 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8F... 248 1e-64 UniRef50_D1U9C4 Diguanylate cyclase n=1 Tax=Desulfovibrio aespoe... 247 3e-64 UniRef50_Q4KDW8 GGDEF domain protein n=6 Tax=Pseudomonas RepID=Q... 246 9e-64 UniRef50_B5JX81 Diguanylate cyclase n=1 Tax=gamma proteobacteriu... 245 1e-63 UniRef50_A8V0B5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydro... 245 1e-63 UniRef50_Q310L5 Diguanylate cyclase (GGDEF domain) n=2 Tax=Desul... 245 1e-63 UniRef50_B8DLP9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 245 2e-63 UniRef50_A3WKT4 GGDEF domain protein n=2 Tax=Alteromonadales Rep... 245 2e-63 UniRef50_C4XS30 GGDEF domain protein n=1 Tax=Desulfovibrio magne... 243 7e-63 UniRef50_D2L2K3 Diguanylate cyclase with GAF sensor n=1 Tax=Desu... 243 7e-63 UniRef50_Q1N175 Diguanylate cyclase (GGDEF domain) n=1 Tax=Berma... 241 2e-62 UniRef50_C6BW86 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 241 3e-62 UniRef50_B1WQB8 Putative diguanylate cyclase n=2 Tax=Cyanothece ... 240 7e-62 UniRef50_B3EBI3 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ... 240 8e-62 UniRef50_D1U434 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 239 8e-62 UniRef50_C0QM24 Putative uncharacterized protein n=1 Tax=Desulfo... 238 2e-61 UniRef50_C8X5B9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 238 2e-61 UniRef50_B8FCK6 Response regulator receiver modulated diguanylat... 238 2e-61 UniRef50_B8FMG8 Diguanylate cyclase n=1 Tax=Desulfatibacillum al... 238 2e-61 UniRef50_A0LD73 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC... 238 2e-61 UniRef50_C6WYA9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 237 3e-61 UniRef50_A5GCU4 Diguanylate cyclase n=2 Tax=Geobacter RepID=A5GC... 237 3e-61 UniRef50_Q47W79 GGDEF domain protein n=1 Tax=Colwellia psychrery... 237 4e-61 UniRef50_C1A5L7 Putative two-component response regulator n=1 Ta... 237 4e-61 UniRef50_A4VQQ9 GGDEF domain protein n=1 Tax=Pseudomonas stutzer... 236 6e-61 UniRef50_A6DDS7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Camin... 236 6e-61 UniRef50_C0QT79 Signal transduction response regulator n=1 Tax=P... 236 7e-61 UniRef50_C6BU46 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 236 8e-61 UniRef50_Q07Y51 Diguanylate cyclase n=2 Tax=Alteromonadales RepI... 235 2e-60 UniRef50_C7LRA7 Diguanylate cyclase n=1 Tax=Desulfomicrobium bac... 235 2e-60 UniRef50_C4LFT4 Diguanylate cyclase n=1 Tax=Tolumonas auensis DS... 234 3e-60 UniRef50_C6C0X5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 234 3e-60 UniRef50_C6BVV0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 234 4e-60 UniRef50_Q15V65 Diguanylate cyclase n=1 Tax=Pseudoalteromonas at... 234 4e-60 UniRef50_Q4KKJ4 Diguanylate cyclase, putative n=5 Tax=Pseudomona... 234 4e-60 UniRef50_Q39ZK6 Response regulator receiver modulated diguanylat... 234 4e-60 UniRef50_D0SXM5 Predicted protein n=2 Tax=Acinetobacter lwoffii ... 234 4e-60 UniRef50_Q489Q4 Sensory box/GGDEF domain protein n=1 Tax=Colwell... 233 4e-60 UniRef50_Q2BQS0 GGDEF family protein n=1 Tax=Neptuniibacter caes... 233 5e-60 UniRef50_A8UV88 Putative uncharacterized protein n=1 Tax=Hydroge... 233 5e-60 UniRef50_A3Y6S3 PAS:GGDEF protein n=1 Tax=Marinomonas sp. MED121... 233 5e-60 UniRef50_A3WKY5 Signaling protein with a ligand-binding sensor d... 233 6e-60 UniRef50_Q2SNU2 Response regulator containing a CheY-like receiv... 233 6e-60 UniRef50_A1ASG6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 233 7e-60 UniRef50_C0N773 GGDEF domain protein n=1 Tax=Methylophaga thioox... 233 7e-60 UniRef50_Q085X7 Diguanylate cyclase n=2 Tax=Alteromonadales RepI... 233 7e-60 UniRef50_Q0A9X2 Diguanylate cyclase n=3 Tax=Proteobacteria RepID... 233 8e-60 UniRef50_D1TF13 Response regulator receiver protein n=1 Tax=Burk... 233 8e-60 UniRef50_A4BIU7 Response regulator containing a CheY-like receiv... 233 9e-60 UniRef50_A7N081 Putative uncharacterized protein n=6 Tax=Vibrio ... 232 1e-59 UniRef50_A3DHG2 Diguanylate cyclase with GAF sensor n=3 Tax=Clos... 232 1e-59 UniRef50_A8UY29 Putative uncharacterized protein n=1 Tax=Hydroge... 232 1e-59 UniRef50_Q5NP17 Diguanylate cyclase with beta propeller sensor n... 232 1e-59 UniRef50_Q1MZ89 Response regulator containing a CheY-like receiv... 232 2e-59 UniRef50_Q1ZGY5 GGDEF domain protein n=1 Tax=Psychromonas sp. CN... 231 2e-59 UniRef50_A4BG19 GGDEF domain protein n=1 Tax=Reinekea blandensis... 231 2e-59 UniRef50_A9FZW1 FHA domain protein n=1 Tax=Sorangium cellulosum ... 231 2e-59 UniRef50_A4C957 Putative uncharacterized protein n=1 Tax=Pseudoa... 231 2e-59 UniRef50_Q07MN8 Diguanylate cyclase n=10 Tax=Bradyrhizobiaceae R... 231 2e-59 UniRef50_A3Y5H4 Diguanylate cyclase (GGDEF domain) n=1 Tax=Marin... 231 2e-59 UniRef50_Q31IP8 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 231 2e-59 UniRef50_Q1JXK3 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 231 2e-59 UniRef50_Q47C76 PAS:GGDEF n=1 Tax=Dechloromonas aromatica RCB Re... 231 2e-59 UniRef50_B5JSY0 Response regulator PleD n=1 Tax=gamma proteobact... 231 2e-59 UniRef50_A0KXZ1 Diguanylate cyclase n=4 Tax=Shewanella RepID=A0K... 231 2e-59 UniRef50_Q486E7 Sensory box/GGDEF domain protein n=2 Tax=Proteob... 231 3e-59 UniRef50_A8UUF5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydro... 231 3e-59 UniRef50_B3PIC1 Sensory box/GGDEF family protein n=5 Tax=Gammapr... 231 3e-59 UniRef50_C9QDN5 Putative uncharacterized protein n=1 Tax=Vibrio ... 230 4e-59 UniRef50_A1VA66 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=... 230 4e-59 UniRef50_Q6ALC0 Putative uncharacterized protein n=1 Tax=Desulfo... 230 5e-59 UniRef50_A6Q2P1 Putative uncharacterized protein n=1 Tax=Nitrati... 230 5e-59 UniRef50_A0L4D8 Diguanylate cyclase n=2 Tax=cellular organisms R... 230 5e-59 UniRef50_A8UT68 Putative uncharacterized protein n=2 Tax=Aquific... 230 5e-59 UniRef50_A6VWF8 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL... 230 5e-59 UniRef50_A3J836 Putative diguanylate cyclase (GGDEF domain) n=1 ... 230 6e-59 UniRef50_Q30SY9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Sulfu... 230 6e-59 UniRef50_C5T1B3 Diguanylate cyclase n=1 Tax=Acidovorax delafield... 230 6e-59 UniRef50_Q74AN9 Response regulator n=1 Tax=Geobacter sulfurreduc... 230 6e-59 UniRef50_Q2RLY1 Diguanylate cyclase (GGDEF domain) n=1 Tax=Moore... 229 6e-59 UniRef50_A0L7F5 Cyclic nucleotide-binding protein n=1 Tax=Magnet... 229 6e-59 UniRef50_A1SVZ1 Diguanylate cyclase n=1 Tax=Psychromonas ingraha... 229 7e-59 UniRef50_Q2BQN9 Diguanylate cyclase, putative n=1 Tax=Neptuniiba... 229 7e-59 UniRef50_C5BK03 Ggdef domain protein n=1 Tax=Teredinibacter turn... 229 7e-59 UniRef50_A5V1I0 Diguanylate cyclase with GAF sensor n=2 Tax=Rose... 229 7e-59 UniRef50_A1VD57 Diguanylate cyclase n=3 Tax=Desulfovibrio vulgar... 229 7e-59 UniRef50_C7R6Y0 Diguanylate cyclase n=1 Tax=Kangiella koreensis ... 229 7e-59 UniRef50_C8X007 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 229 8e-59 UniRef50_A0LAY9 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC... 229 8e-59 UniRef50_Q3A5K1 Two component signal transduction response regul... 229 8e-59 UniRef50_B6ER50 Putative GGDEF protein n=1 Tax=Aliivibrio salmon... 229 8e-59 UniRef50_Q2BLA2 Putative uncharacterized protein n=1 Tax=Neptuni... 229 8e-59 UniRef50_C0QBK1 GGDEF domain family protein n=1 Tax=Desulfobacte... 229 8e-59 UniRef50_Q6AJ00 Putative uncharacterized protein n=1 Tax=Desulfo... 229 9e-59 UniRef50_Q88RK0 GGDEF domain protein n=3 Tax=Pseudomonas putida ... 229 9e-59 UniRef50_C9YC42 Putative uncharacterized protein n=1 Tax=Curviba... 229 1e-58 UniRef50_Q7MRL2 Putative uncharacterized protein n=1 Tax=Wolinel... 229 1e-58 UniRef50_B1KMS8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 229 1e-58 UniRef50_Q3AFS2 GGDEF domain protein n=1 Tax=Carboxydothermus hy... 229 1e-58 UniRef50_UPI000185121C diguanylate cyclase n=1 Tax=Bacillus coah... 229 1e-58 UniRef50_C6P3N4 Diguanylate cyclase n=1 Tax=Sideroxydans lithotr... 228 1e-58 UniRef50_B8DJ36 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 228 2e-58 UniRef50_Q02P32 Putative two-component response regulator n=6 Ta... 228 2e-58 UniRef50_Q7NZV8 Putative uncharacterized protein n=1 Tax=Chromob... 228 2e-58 UniRef50_Q0BZW4 Response regulator PleD n=1 Tax=Hyphomonas neptu... 228 3e-58 UniRef50_Q8DCJ9 FOG: GGDEF domain n=3 Tax=Vibrio RepID=Q8DCJ9_VIBVU 228 3e-58 UniRef50_Q315M6 Diguanylate cyclase n=1 Tax=Desulfovibrio desulf... 228 3e-58 UniRef50_C6P6Y5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 228 3e-58 UniRef50_C0QPI4 Response regulator n=1 Tax=Persephonella marina ... 227 3e-58 UniRef50_Q2BP61 GGDEF/HAMP domain protein n=1 Tax=Neptuniibacter... 227 3e-58 UniRef50_Q4ZZT3 GGDEF n=5 Tax=Pseudomonas syringae group RepID=Q... 227 3e-58 UniRef50_B7VQN9 GGDEF family protein n=1 Tax=Vibrio splendidus L... 227 4e-58 UniRef50_C6DCR6 Diguanylate cyclase n=6 Tax=Pectobacterium RepID... 227 4e-58 UniRef50_A5UZW7 Diguanylate cyclase with GAF sensor n=2 Tax=Rose... 227 5e-58 UniRef50_Q314F9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Desul... 227 5e-58 UniRef50_Q47Y21 GGDEF domain protein n=1 Tax=Colwellia psychrery... 226 5e-58 UniRef50_Q1D632 GAF domain/GGDEF domain protein n=2 Tax=Cystobac... 226 6e-58 UniRef50_C4XKN6 Putative signaling protein n=2 Tax=Desulfovibrio... 226 6e-58 UniRef50_D0LHJ8 Diguanylate cyclase n=1 Tax=Haliangium ochraceum... 226 6e-58 UniRef50_Q1J2W1 Diguanylate cyclase, GAF, HAMP domains protein n... 226 7e-58 UniRef50_B9TNG7 Putative uncharacterized protein n=1 Tax=Ricinus... 226 7e-58 UniRef50_Q089K4 Diguanylate cyclase n=1 Tax=Shewanella frigidima... 226 7e-58 UniRef50_C4KD29 Response regulator receiver modulated diguanylat... 226 7e-58 UniRef50_A7BV03 Sensor protein n=2 Tax=Beggiatoa sp. PS RepID=A7... 226 8e-58 UniRef50_A6Q525 Signal transduction response regulator n=1 Tax=N... 226 8e-58 UniRef50_Q1K485 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 226 9e-58 UniRef50_Q2LS38 Response regulator protein with GGDEF domain n=2... 226 9e-58 UniRef50_Q1K453 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 226 9e-58 UniRef50_Q2BML0 Putative diguanylate cyclase (GGDEF domain) n=1 ... 226 1e-57 UniRef50_B8KV43 Sensory box histidine kinase n=1 Tax=gamma prote... 226 1e-57 UniRef50_C1D6I3 Diguanylate cyclase n=1 Tax=Laribacter hongkonge... 225 1e-57 UniRef50_Q2IXE2 Response regulator receiver modulated diguanylat... 225 1e-57 UniRef50_B7WUF6 Diguanylate cyclase n=1 Tax=Comamonas testostero... 225 1e-57 UniRef50_B6ESF0 Membrane associated GGDEF protein n=1 Tax=Aliivi... 225 1e-57 UniRef50_Q1DC46 FHA domain/GGDEF domain protein n=2 Tax=Myxococc... 225 2e-57 UniRef50_UPI0000E11028 response regulator receiver modulated dig... 225 2e-57 UniRef50_B0TJ24 Periplasmic/7TM domain sensor diguanylate cyclas... 225 2e-57 UniRef50_B9QV28 GGDEF domain protein n=1 Tax=Labrenzia alexandri... 225 2e-57 UniRef50_A9WGU1 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A... 225 2e-57 UniRef50_D1U463 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 224 2e-57 UniRef50_A6VUN1 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL... 224 2e-57 UniRef50_B6BII0 GGDEF domain/pas/pac sensor domain protein n=1 T... 224 3e-57 UniRef50_A6LYL1 Diguanylate cyclase n=1 Tax=Clostridium beijerin... 224 3e-57 UniRef50_C6CQG0 Diguanylate cyclase n=7 Tax=Enterobacteriaceae R... 224 3e-57 UniRef50_Q1JXC4 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 224 3e-57 UniRef50_A6CY69 Putative GGDEF family protein n=1 Tax=Vibrio shi... 224 4e-57 UniRef50_B8JB86 Diguanylate cyclase n=4 Tax=Anaeromyxobacter Rep... 224 4e-57 UniRef50_C1TNZ5 Diguanylate cyclase (GGDEF) domain-containing pr... 224 4e-57 UniRef50_A1RG31 Diguanylate cyclase n=3 Tax=Shewanella RepID=A1R... 223 5e-57 Sequences not found previously or not previously below threshold: UniRef50_C6WYA7 Diguanylate cyclase with PAS/PAC and GAF sensors... 240 4e-62 UniRef50_B4U6Y8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 240 4e-62 UniRef50_B3E6Y7 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ... 237 3e-61 UniRef50_B8DLV9 Diguanylate cyclase n=4 Tax=Desulfovibrio vulgar... 237 4e-61 UniRef50_B5JW02 Diguanylate cyclase n=1 Tax=gamma proteobacteriu... 234 3e-60 UniRef50_A9WIR5 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A... 234 4e-60 UniRef50_Q21PN7 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 233 5e-60 UniRef50_A1AK55 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=... 233 6e-60 UniRef50_Q30QX5 Diguanylate cyclase n=2 Tax=Proteobacteria RepID... 233 6e-60 UniRef50_C4XPG9 GGDEF domain protein n=1 Tax=Desulfovibrio magne... 233 8e-60 UniRef50_A8TM57 Putative diguanylate cyclase (GGDEF domain) with... 233 8e-60 UniRef50_Q30WV4 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 233 9e-60 UniRef50_Q0EXC8 Signal transduction protein containing a membran... 233 9e-60 UniRef50_B8DIJ3 Diguanylate cyclase with PAS/PAC and GAF sensors... 232 1e-59 UniRef50_C5T8F5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 232 1e-59 UniRef50_C6NZP2 Periplasmic/7TM domain sensor diguanylate cyclas... 232 1e-59 UniRef50_Q2VYV6 FOG: GGDEF domain n=2 Tax=Magnetospirillum RepID... 231 2e-59 UniRef50_B9ZM04 Diguanylate cyclase n=1 Tax=Thioalkalivibrio sp.... 231 2e-59 UniRef50_B7K273 Response regulator receiver modulated diguanylat... 231 3e-59 UniRef50_C6BZS4 Diguanylate cyclase with PAS/PAC and GAF sensors... 231 3e-59 UniRef50_C8WZ84 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 231 3e-59 UniRef50_UPI0000384142 COG2199: FOG: GGDEF domain n=1 Tax=Magnet... 230 4e-59 UniRef50_Q3ADQ4 Response regulator/sensory box protein/GGDEF dom... 230 4e-59 UniRef50_C1XLF8 Diguanylate cyclase (GGDEF) domain-containing pr... 230 5e-59 UniRef50_Q21HV6 Response regulator receiver modulated diguanylat... 230 5e-59 UniRef50_C5SA57 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 230 5e-59 UniRef50_UPI0001AEC0DE GGDEF domain protein n=1 Tax=Alteromonas ... 230 6e-59 UniRef50_B6BK11 Ggdef/pas/pac-domain containing protein n=1 Tax=... 229 8e-59 UniRef50_B5ZG65 Diguanylate cyclase with PAS/PAC sensor n=4 Tax=... 229 8e-59 UniRef50_Q087A8 Diguanylate cyclase n=1 Tax=Shewanella frigidima... 229 1e-58 UniRef50_B4UA43 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 229 1e-58 UniRef50_Q2W1M0 Response regulator containing a CheY-like receiv... 229 1e-58 UniRef50_A8ZX32 Diguanylate cyclase n=1 Tax=Desulfococcus oleovo... 229 1e-58 UniRef50_C8QVV3 Diguanylate cyclase n=1 Tax=Desulfurivibrio alka... 229 1e-58 UniRef50_C1SIQ7 Diguanylate cyclase (GGDEF) domain-containing pr... 229 1e-58 UniRef50_Q67JR0 Putative uncharacterized protein n=1 Tax=Symbiob... 229 1e-58 UniRef50_B0C2A6 Diguanylate cyclase (GGDEF domain), putative n=3... 228 2e-58 UniRef50_Q3JE99 Response regulator receiver modulated diguanylat... 228 2e-58 UniRef50_Q31EI0 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiom... 227 3e-58 UniRef50_C0Z6I5 Putative uncharacterized protein n=1 Tax=Breviba... 227 3e-58 UniRef50_Q479Y1 GGDEF n=1 Tax=Dechloromonas aromatica RCB RepID=... 227 4e-58 UniRef50_B7K319 Response regulator receiver modulated diguanylat... 227 5e-58 UniRef50_A0YVG8 GGDEF/response regulator receiver domain protein... 227 5e-58 UniRef50_Q3KAB6 Putative GGDEF domain regulatory protein n=2 Tax... 226 6e-58 UniRef50_A1TWP6 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A... 226 6e-58 UniRef50_A1U7E6 Diguanylate cyclase n=1 Tax=Marinobacter aquaeol... 226 7e-58 UniRef50_B9ZRW3 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 226 8e-58 UniRef50_B7R5U6 PAS fold family protein n=13 Tax=Thermoanaerobac... 226 9e-58 UniRef50_A1U2H0 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A... 226 9e-58 UniRef50_B4U5K2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 226 9e-58 UniRef50_B9Z0Y0 Diguanylate cyclase n=1 Tax=Lutiella nitroferrum... 226 1e-57 UniRef50_C1TNC9 Diguanylate cyclase (GGDEF) domain-containing pr... 225 1e-57 UniRef50_Q0A8G7 Diguanylate cyclase n=1 Tax=Alkalilimnicola ehrl... 225 1e-57 UniRef50_Q21KC2 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 225 1e-57 UniRef50_B4RZE8 GGDEF domain protein n=2 Tax=Alteromonadales Rep... 225 1e-57 UniRef50_B0C0K6 Diguanylate cyclase (GGDEF) domain protein n=3 T... 225 1e-57 UniRef50_A8UY33 Putative uncharacterized protein n=1 Tax=Hydroge... 225 2e-57 UniRef50_Q31GI5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiom... 225 2e-57 UniRef50_D2L986 Diguanylate cyclase n=1 Tax=Desulfovibrio sp. FW... 225 2e-57 UniRef50_Q2W7A4 Response regulator n=4 Tax=Proteobacteria RepID=... 224 2e-57 UniRef50_B8KJJ5 GGDEF domain protein n=2 Tax=unclassified Gammap... 224 2e-57 UniRef50_C9NRL0 Putative virulence-mediating protein VirC n=2 Ta... 224 2e-57 UniRef50_A9B3D1 Diguanylate cyclase n=2 Tax=Bacteria RepID=A9B3D... 224 2e-57 UniRef50_Q21NS3 Diguanylate cyclase n=5 Tax=Alteromonadales RepI... 224 3e-57 UniRef50_A3WMD3 Phytochrome sensor diguanylate cyclase/phosphodi... 224 3e-57 UniRef50_A4VQF4 GGDEF domain protein n=3 Tax=Proteobacteria RepI... 224 3e-57 UniRef50_C0QLY1 Two domain sensory box histidine kinase (PAS/PAC... 224 3e-57 UniRef50_B7IH39 Diguanylate cyclase n=2 Tax=Bacteria RepID=B7IH3... 224 3e-57 UniRef50_C6NZM9 Diguanylate cyclase n=1 Tax=Sideroxydans lithotr... 224 4e-57 UniRef50_C5T761 Diguanylate cyclase n=1 Tax=Acidovorax delafield... 224 4e-57 UniRef50_A1U4U5 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A... 224 4e-57 UniRef50_B3QU32 Diguanylate cyclase and serine/threonine protein... 223 4e-57 UniRef50_A1SRM4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 223 4e-57 UniRef50_Q2BQL8 Probable two-component response regulator n=1 Ta... 223 4e-57 UniRef50_A9L0C9 Diguanylate cyclase n=2 Tax=Shewanella baltica R... 223 5e-57 UniRef50_A0YVN1 PleD-like protein n=2 Tax=Cyanobacteria RepID=A0... 223 5e-57 >UniRef50_Q8XAZ4 Uncharacterized protein yneF n=65 Tax=Enterobacteriaceae RepID=YNEF_ECO57 Length = 315 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 314/315 (99%), Positives = 314/315 (99%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA Sbjct: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT Sbjct: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL Sbjct: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL Sbjct: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY TLTDDFNKLMVEADTCLYRSKKD Sbjct: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCLYRSKKD 300 Query: 301 GRNRTSTMRYGEEVV 315 GRNRTSTMRYGEEVV Sbjct: 301 GRNRTSTMRYGEEVV 315 >UniRef50_D2TIF8 Putative signal transduction protein n=2 Tax=Enterobacteriaceae RepID=D2TIF8_CITRO Length = 484 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 245/307 (79%), Positives = 276/307 (89%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 + ADWFSEQFSTGVLIVPCMLTL IPG + RF+ EQMMP IALIVSV+ASVVIGGAGSLA Sbjct: 163 LFADWFSEQFSTGVLIVPCMLTLGIPGSVKRFRPEQMMPVIALIVSVLASVVIGGAGSLA 222 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 FPLPALIWCAVRYTPQVTCLLTF+TGAVEIVLVANSVI+I+V SP S PQMFSARLGI T Sbjct: 223 FPLPALIWCAVRYTPQVTCLLTFLTGAVEIVLVANSVINIAVASPLSAPQMFSARLGIVT 282 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 MAICPIMV+FSVAAINSLMKQ++LRADFDFLTQVYSRSGLYEALK + +Q++TVMLL Sbjct: 283 MAICPIMVAFSVAAINSLMKQISLRADFDFLTQVYSRSGLYEALKRQAYPASQNMTVMLL 342 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSINDNYGHECGD+VL VFARHIQ+IVGD+GLVARMGGEEFAV +P+ +P +G+ Sbjct: 343 DIDYFKSINDNYGHECGDRVLCVFARHIQRIVGDRGLVARMGGEEFAVVLPTSHPEEGMQ 402 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE IRK V LQPF WQQ+++YLTVSIGVG+G+ + T+TD FNKLMVEAD CLYRSK + Sbjct: 403 LAETIRKAVALQPFDWQQQSIYLTVSIGVGNGKIAAQTVTDIFNKLMVEADECLYRSKNE 462 Query: 301 GRNRTST 307 GRNRTS Sbjct: 463 GRNRTSA 469 >UniRef50_A8A075 Diguanylate cyclase (GGDEF) domain protein n=2 Tax=Enterobacteriaceae RepID=A8A075_ECOHS Length = 279 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 278/279 (99%), Positives = 278/279 (99%) Query: 37 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS 96 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS Sbjct: 1 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS 60 Query: 97 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 156 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS Sbjct: 61 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 120 Query: 157 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 216 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG Sbjct: 121 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 180 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 276 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY Sbjct: 181 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 240 Query: 277 LTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 315 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV Sbjct: 241 RTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 279 >UniRef50_B1JAS6 Diguanylate cyclase n=5 Tax=Pseudomonas RepID=B1JAS6_PSEPW Length = 469 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 10/319 (3%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIA--SVVIGGAGSLAFP 62 WFSEQFST VL++P +LT L R A+ + A L++ S+ GG G++AFP Sbjct: 153 WFSEQFSTAVLLLPVLLTAPSARALVRSGAQAVALAPLLVLLASLAFSIAFGGPGAIAFP 212 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV-GSPFSIPQMFSARLGIATM 121 + AL+WCA Y+P + LLT + G+ IV VA +++ SV S + + SAR+GIA + Sbjct: 213 IAALLWCAWTYSPFLVSLLTLIAGSTLIVAVAQNLMHFSVPQSELGVTTLMSARMGIAML 272 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-----LT 176 + P++V+ A SL+ ++A +A D LT +RS + + +H LT Sbjct: 273 ILGPLVVACVSQANRSLLARLAHQATIDHLTGALTRSAFTRRANALLDSRQKHAQALPLT 332 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 +M+LDID+FKSIND +GH GD+VL FAR +Q + L+ARMGGEEF V +P + P Sbjct: 333 LMMLDIDHFKSINDRHGHGVGDQVLRQFARTLQDQLHGGELLARMGGEEFVVLLPGLAPE 392 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 AE++R+ V+ +TVSIG+ T ++L+ AD LYR Sbjct: 393 RASFTAERLRRAVQDLHLAKGDGRPQITVSIGLDGCAGHEPAPT--LDELLARADQALYR 450 Query: 297 SKKDGRNRTSTMRYGEEVV 315 +K GRNR +V+ Sbjct: 451 AKAHGRNRVEVAETQRQVI 469 >UniRef50_C8QCH2 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b RepID=C8QCH2_9ENTR Length = 474 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 132/308 (42%), Positives = 195/308 (63%), Gaps = 4/308 (1%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVLPR--FKAEQMMPAIALIVSVIASVVIGGAGSLA 60 DWFSEQFST ++++P +L + VL R +++P +++S+ +IGGAGSL Sbjct: 154 GDWFSEQFSTSLMLLPVLLARPLRTVLWRSLLHPGKLLPLTGVVLSLTIGAMIGGAGSLT 213 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLGIA 119 FP+PALIWCA+ +T L+ +TG EI+LV++ V++I + I + S RLG+A Sbjct: 214 FPVPALIWCAIVLPIPITSLVLLITGITEIILVSHGVMNIQGDDALLPISHLTSVRLGVA 273 Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVML 179 T+ I P++V+ S+ AI L ++++LRA+FDFLTQ+ SRSGLYE L+ + V++ Sbjct: 274 TITISPLLVAVSMDAIRQLNQRLSLRANFDFLTQLLSRSGLYENLRQEPFSPQRAAGVVM 333 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LD+DYFK+INDN+GH+ GD VL AR IQ +V ++GLV R GGEEF V V N Sbjct: 334 LDVDYFKTINDNFGHDAGDGVLEEIARRIQDVVNNRGLVCRFGGEEFVVVVFDYNHSQLY 393 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRA-SYLTLTDDFNKLMVEADTCLYRSK 298 +AE IR+ + + F Q T+ +T S+G+ G A + N+L+ AD LY SK Sbjct: 394 QLAEVIRQSMVREKFWLQGNTVTVTASLGLALGNAVNEREWQGVVNRLISAADKNLYLSK 453 Query: 299 KDGRNRTS 306 ++GRN+TS Sbjct: 454 RNGRNQTS 461 >UniRef50_C6CDM3 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDM3_DICDC Length = 469 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 178/310 (57%), Gaps = 6/310 (1%) Query: 2 LADWFSEQFSTGVLIVPCMLTL--AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSL 59 +WFS+QF T VL +P +LT+ I +P ++P + L S+I +I L Sbjct: 158 FLNWFSDQFYTSVLFLPLLLTVRSNIRLRIPALNFNDILPILFLAASLIVGAMISPLAIL 217 Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSI-PQMFSARLGI 118 AFPLPAL WCA+ Y +T L+T TG +++++ A V I G Q+ R+ I Sbjct: 218 AFPLPALTWCAIVYPLWLTRLITLCTGTLQLIVSAEHVYAIYSGLHDEFTNQVVITRISI 277 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT-QHLTV 177 A + P+ ++ + I L K++ L+A +DFLT SR G EAL + ++ ++++V Sbjct: 278 AAIIFSPLFMAMNAKTIRLLNKRLLLQASYDFLTNTLSRYGFNEALTNYGKEERYRNVSV 337 Query: 178 --MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 ML+DID+FK IND++GH+CGD+VL A I+ + ++GL++R+GGEEFAV +P Sbjct: 338 NIMLIDIDHFKHINDSFGHDCGDEVLKQVAAIIKDTINEQGLISRIGGEEFAVVCFDYSP 397 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 +A+K+R+ + F + Q + + +SIG+ + L + ++L +AD LY Sbjct: 398 DAFYWLADKLRRRIYETTFMFNQSPVPVAISIGLAHASSPNGDLLNTVHQLCTQADKNLY 457 Query: 296 RSKKDGRNRT 305 +K+ GRN+T Sbjct: 458 AAKRQGRNQT 467 >UniRef50_D0IXN6 Diguanylate cyclase n=2 Tax=Comamonas testosteroni RepID=D0IXN6_COMTE Length = 473 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 92/314 (29%), Positives = 163/314 (51%), Gaps = 13/314 (4%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAE-----QMMPAIALIVSVIASVVIGGA 56 + W S ++ ++ +P +L E +++P +++I S I G Sbjct: 162 FSMWLSSEWLNYMMFLPIVLAWPTRKQPVGHLGEPSPLRRILPLLSVIALEAISYWIKGP 221 Query: 57 GSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 GSLAF LPALIWCA+ Y L+T I+ ++ ++ +P + S R+ Sbjct: 222 GSLAFSLPALIWCALSYRIFSLTLITATLCLSSIIFISLGTLEF---TPAHFLETLSFRM 278 Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQ 173 G+ + + P+ V+ S A N LM++++ + DFLT + +R + + + Q Sbjct: 279 GLCMLVLGPLAVAGSHMARNELMQKLSHAVNHDFLTDMLARGAFMKQGQRILERCRQDGQ 338 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 +++LD+D+FK IND++GH GD++L F++ + +++ + +V RMGGEEFAVA+P V Sbjct: 339 PFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALPKV 398 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 + +A++I + + KT+ TVSIG+ + L + L+++AD Sbjct: 399 DASAAQEIAKRINRAIRELRVPMNDKTMSATVSIGLVHTTS--LQAHQSLDMLLLQADQA 456 Query: 294 LYRSKKDGRNRTST 307 LY +K GRNR S+ Sbjct: 457 LYEAKAAGRNRVSS 470 >UniRef50_A0P392 GGDEF domain protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P392_9RHOB Length = 307 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 158/310 (50%), Gaps = 13/310 (4%) Query: 10 FSTGVLIVPCMLTLA--------IPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF 61 + +P +L+ P + +F E+ P I L+VS IA ++GG G++AF Sbjct: 1 MVNYISFLPVVLSAPKLDGTHTDFPARIRQFWQEKWAPLILLLVSCIAGTLVGGPGAIAF 60 Query: 62 PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM 121 P+PAL+WC + Y T +LT G +V+++N + D S + + S RLGI+ + Sbjct: 61 PVPALLWCGLVYPVFPTTILTLCIGVWGLVILSNGLGD-SASLQLDVMTLVSIRLGISLV 119 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLD 181 A+ PIM+S N+L+ ++ A D LT V +R+ E T ++++D Sbjct: 120 ALAPIMLSCVTQNRNALVGRLQYLATHDQLTNVLNRNAFREEAARRLALGTSGFALLMVD 179 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D FK++ND +GH GD VL F ++ + L+ RMGGEEFAV +P VD + Sbjct: 180 LDDFKAVNDTHGHATGDTVLVNFVHRVKNTLPPGSLLGRMGGEEFAVLIPDCRQVDAVAE 239 Query: 242 AEKIRKGVELQPFT-WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 AE IR+ V +P K + +T S+GV A D + L+ EAD Y +KK Sbjct: 240 AENIRQSVGTEPVPAGDGKEVRVTASLGVV---AVEHGDADSLDTLLAEADRLCYLAKKR 296 Query: 301 GRNRTSTMRY 310 GRNR + Sbjct: 297 GRNRVEAIEE 306 >UniRef50_D0FTB2 Conserved uncharacterized protein YneF n=3 Tax=Erwinia RepID=D0FTB2_ERWPY Length = 464 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 184/312 (58%), Gaps = 12/312 (3%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKA----EQMMPAIALIVSVIASVVIGGAGS 58 + WFSEQ ST +L++P M++L LP+ A ++P + LIV++++++ +GG GS Sbjct: 150 SSWFSEQMSTSILLLPLMISLPRRQQLPQLAAALRDSSVLPLLTLIVTIVSAIWLGGGGS 209 Query: 59 LAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLG 117 L FPLPAL+WCA+ Y VTC LT +TG EI+LVA +V++I G F I + SARLG Sbjct: 210 LLFPLPALLWCAISYPLFVTCFLTMLTGISEIILVAGNVLNIQGKGDLFRIDSLSSARLG 269 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH--- 174 +A M I P++VS S + L+ ++ RAD+DFLT +RSGL L S + + Sbjct: 270 VAAMLIGPLIVSLSTLSNKKLVARITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGF 329 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 +++DID FK IND +GH GD VL+ A +++ + LV RMGGEEF + + + Sbjct: 330 IGAALVIDIDRFKDINDTWGHAAGDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGM 389 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 L+A ++R+ VE + L +TVSIG+ S ++ + ++ ++ AD Sbjct: 390 TQPRSSLLANRLRQNVENNKIIFNGHDLSVTVSIGISSLN---ISNVNSLDESIMRADEQ 446 Query: 294 LYRSKKDGRNRT 305 LY +K GRN+ Sbjct: 447 LYIAKSSGRNQV 458 >UniRef50_C6CM30 Diguanylate cyclase n=1 Tax=Dickeya zeae Ech1591 RepID=C6CM30_DICZE Length = 470 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 121/310 (39%), Positives = 182/310 (58%), Gaps = 6/310 (1%) Query: 2 LADWFSEQFSTGVLIVPCMLTL--AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSL 59 +WFS+QF T VL +P +LTL IP LP + +P + L+VS++ + ++G L Sbjct: 159 FLNWFSDQFYTAVLFLPLLLTLRSQIPLQLPMLRLSDALPLLLLLVSIVVAPLLGPVAIL 218 Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI-SVGSPFSIPQMFSARLGI 118 AFPLPAL WCA+ Y + L+T GA E++L A V S P+ + Q+ AR+GI Sbjct: 219 AFPLPALTWCAIVYPLWLIRLITLCVGATELILTAEHVYAFYSPQDPYFMHQIIIARIGI 278 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHL 175 A P+M++ + I L ++ +A DFLT SR G EAL Q + Sbjct: 279 AATIFSPLMMATNARTIRQLNARLLQQASHDFLTNTLSRYGFTEALTTHGQSVKSQHDAV 338 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 +ML+DID+FK+IND++GH+CGD++L A+ IQ+ V +GLV+R+GGEEFAV + NP Sbjct: 339 NIMLIDIDHFKNINDSFGHDCGDEILRQVAKVIQQAVSAQGLVSRIGGEEFAVVCFNYNP 398 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 +A+ +R+ ++ F + Q+ + +TVSIG+ S L D ++L AD LY Sbjct: 399 SAFYRLADSLRQTIQQTVFLFNQQPVPVTVSIGIAHAPTSGKYLVDTVHELFPLADKNLY 458 Query: 296 RSKKDGRNRT 305 +K++GRNRT Sbjct: 459 TAKREGRNRT 468 >UniRef50_D2C311 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech586 RepID=D2C311_DICD5 Length = 471 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 116/311 (37%), Positives = 180/311 (57%), Gaps = 7/311 (2%) Query: 2 LADWFSEQFSTGVLIVPCMLTLA--IPGVLPR-FKAEQMMPAIALIVSVIASVVIGGAGS 58 +WFS+QF T VL +P +LTL IP LP + +P + L++S+ + ++G Sbjct: 159 FLNWFSDQFYTAVLFLPLLLTLQSRIPLHLPASLQMADALPLLLLLLSICIAPLLGPVAI 218 Query: 59 LAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLG 117 LAFPLPAL WCA+ Y + L+T GA E+++ A V + P + Q+ AR+G Sbjct: 219 LAFPLPALTWCAIVYPLWLIRLITLCVGATELIMTAEHVYALYNPQDPMFLHQVVIARIG 278 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQH 174 IA P+M++ + I L ++ +A DFLT SR G EAL Q Sbjct: 279 IAATIFSPLMMATNARTIRQLNARLLRQASHDFLTNTLSRYGFTEALSTHDQNIKSQQDA 338 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 + +ML+DID FK+IND++GH+CGD++L A IQ+ V +GLV+R+GGEEFAV + + Sbjct: 339 VNIMLIDIDNFKNINDSFGHDCGDEILRQVANVIQRTVSAQGLVSRIGGEEFAVVCFNYS 398 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 P +A+++R+ ++ F + Q+ + +TVSIG+ + + L D ++L AD L Sbjct: 399 PPAFYRLADELRQTIQHTVFLFNQQHVPVTVSIGIAHAQVAGKHLVDTVHELFPLADKNL 458 Query: 295 YRSKKDGRNRT 305 Y +K++GRNRT Sbjct: 459 YTAKREGRNRT 469 >UniRef50_A8GAZ5 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GAZ5_SERP5 Length = 482 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 116/315 (36%), Positives = 181/315 (57%), Gaps = 13/315 (4%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPR----FKAEQMMPAIALIVSVIASVVIGGAGSLA 60 WFSEQFST +L++P +L L R ++ MP +AL+ S++ SV IGG G++A Sbjct: 158 WFSEQFSTNLLLLPVLLAAPRLKQLLRMQINWQLRASMPLLALLFSLVFSVYIGGPGAIA 217 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIV-LVANSVIDISVGSPFSI-PQMFSARLGI 118 FP+PAL+WCAVRY LLT +TG EI + AN ++ + + + + SARLGI Sbjct: 218 FPIPALLWCAVRYQLFTVTLLTLLTGMTEISSISANLMLYETPNNHIAFLDTLMSARLGI 277 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHL 175 A + + P++++ S+A L++++ A+ DFLT V +R+ L L K + + Sbjct: 278 AMLVMGPLILASSIAVNRKLLRRLEHSANHDFLTGVLARNALTRKAGELLEHKHKSKEAV 337 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 +++L+DID+FK IND +GH GD+VL+ FA +++ + L R+GGEEFA+ +P Sbjct: 338 SLLLIDIDHFKQINDTHGHLVGDQVLASFAHIVRRELRHDQLFGRLGGEEFAIMLPRALA 397 Query: 236 VDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 G+ +AE +R+ V+ K L +T+S+GV S + +LM AD L Sbjct: 398 AQGVALAEHLRQLVQKADLLPTGKVPLNITISVGVASL---GMNEVKSLEQLMNMADIAL 454 Query: 295 YRSKKDGRNRTSTMR 309 YR+K GRNR + Sbjct: 455 YRAKSQGRNRVESFN 469 >UniRef50_D0S942 Response regulator n=2 Tax=Acinetobacter RepID=D0S942_ACIJO Length = 476 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 85/318 (26%), Positives = 150/318 (47%), Gaps = 23/318 (7%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRF---------KAEQMMPAIALIVSVIASVVIGG 55 W++ + + ++P MLT L + ++P +++++SV + + G Sbjct: 167 WWTGEVLNCISLLPLMLTFPAAKKLKYLWNNRRQCETQFVDVLPLLSVLISVACTHLFFG 226 Query: 56 AGSLAFPLPALIWCAVRYTPQVTC----LLTFVTGAVEIVLVANSVIDISVGSPFSIPQM 111 G+L FPL LIW A+ Y L+ FVT + D + + Sbjct: 227 PGALLFPLAGLIWAALSYNLFYVSIINSLVCFVTYHSLTTYYISRTADNFLATS------ 280 Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ 171 S R+G+ + I P+++ + L K+V A+ D LT V +R + ++ + Sbjct: 281 ISVRIGLCMLMIAPLLLCIVSRNRHDLYKEVLYLANHDPLTHVGNRRFFFTQTENLLKEN 340 Query: 172 -TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + +++++LDID+FK +ND YGH GD +L FA ++ + ++ L ARMGGEEF V + Sbjct: 341 LVKSMSIIVLDIDHFKKMNDQYGHYIGDVLLQSFATTVKSNLREQDLFARMGGEEFVVVL 400 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 + ++ ++AE+I + V L +TVS+GV L + L+ A Sbjct: 401 NNTTEIESQIIAERICRAVATSKTQVAHAVLSMTVSLGVVH---QVLPTQNSLQSLLNRA 457 Query: 291 DTCLYRSKKDGRNRTSTM 308 D LY++K GRN+ Sbjct: 458 DRALYQAKTLGRNQVQLA 475 >UniRef50_B7GZC2 Uncharacterized protein yneF n=10 Tax=Acinetobacter RepID=B7GZC2_ACIB3 Length = 473 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 151/316 (47%), Gaps = 17/316 (5%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIPGVLPRF--------KAEQMMPAIALIVSVIASVVI 53 W + + +L++P +L + + KA +P A+++S+ S Sbjct: 159 FGYWVTSELQNALLLLPIILNIPPYLKIKTHLKGNRIYIKAIDFLPLFAVLISIGVSYYD 218 Query: 54 GGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFS 113 G GSL +P+ ALIWCA+RY P + L+T T A I V+ + + S S Sbjct: 219 SGPGSLLYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPQDYLSNN--IS 276 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLK 170 R+G+ M + P+ VS A + L++++ D LT +R ++ L+ K Sbjct: 277 IRIGLIMMTVAPLTVSSISALHSELIQKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQK 336 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + + +LD+D+FK +ND+YGH GD+ L IQ I+ L+ R GGEEFA+ + Sbjct: 337 ENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFI 396 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 P +AE+IR + QP K +++ VSIG+ SY L E Sbjct: 397 PDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQVSIGISLYSPSYHR---SIESLFKE 453 Query: 290 ADTCLYRSKKDGRNRT 305 AD LY++K+ GRNR Sbjct: 454 ADDALYQAKRQGRNRV 469 >UniRef50_A8GES9 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GES9_SERP5 Length = 500 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 101/325 (31%), Positives = 166/325 (51%), Gaps = 27/325 (8%) Query: 2 LADWFSEQFSTGVLIVPCMLTLA----------IPGVLPRFKAEQMMPAIALIV----SV 47 LA W S +F+ + ++P +L V R + + IA+++ + Sbjct: 173 LALWLSSEFTNYITLMPFILAFPRDWKGYLRSIFQAVTLRSQWPNTVRKIAVLLLLLLAC 232 Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 S++IGG G++ FP+P L+W A+ ++ L + + + VL + ID+ + + Sbjct: 233 FGSILIGGPGAVIFPMPILLWLAMSFS-----LFSTMIAVLVYVLWCHLAIDLGLITTNL 287 Query: 108 IPQMF----SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 +M S RLG+A +A+ PI V+ A N+L++++ A+ D LT V +RS + Sbjct: 288 DMKMLQNTVSMRLGVALLALGPIAVASMNFARNALLQRLEHVANHDALTHVLTRSAFMQR 347 Query: 164 LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 ++ + + +M+LDIDYFKSIND +GH GD L F R I + D L RMGG Sbjct: 348 GTRLVSQKGERICIMMLDIDYFKSINDRFGHAGGDAALLSFTRAITGDLRDNDLFGRMGG 407 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDD 282 EEFA+ P D L +AE++R VE++ L +TVSIG+ + + Sbjct: 408 EEFAIVAPIAQQQDALSLAERLRHRVEIESINMPAGAALQITVSIGMVTCIGG---SGQN 464 Query: 283 FNKLMVEADTCLYRSKKDGRNRTST 307 + L+ AD +Y++K GRNR +T Sbjct: 465 LDNLLKIADLAVYKAKNSGRNRVAT 489 >UniRef50_C6DKF8 Diguanylate cyclase n=5 Tax=Pectobacterium RepID=C6DKF8_PECCP Length = 489 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 151/327 (46%), Gaps = 18/327 (5%) Query: 2 LADWFSEQFSTGVLIVPCML-------TLAIPGVLPRFKAEQMMPAIALIVSVIASVVIG 54 DWFSEQ TG+++ L L + P+ E + P + I+ ++ S+ Sbjct: 167 FMDWFSEQLGTGIILAFFFLRGKDILRALRNIPLCPKHIRENIFPFLVFIIFLLVSLFFQ 226 Query: 55 GAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVAN--SVIDISVGSPFSIPQMF 112 A + + L CA Y+ + LL +TG + L N ++ S + + Sbjct: 227 DASLITLSVIPLTLCAFNYSFPIMSLLCAITGVILNYLYINQVGILINSNSEAYINSFLT 286 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP----S 168 +ARL IA + + + VS V+ L+K + + D LT ++R L Sbjct: 287 TARLNIAMLIMAMLSVSHFVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGLLM 346 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 K+ + LT++ LDIDYFK +ND YGH GD++++ FAR + + ++ R GGEEF + Sbjct: 347 NKRKRQLTLLFLDIDYFKQVNDTYGHASGDELIASFARMLSANIRPSDILCRWGGEEFVI 406 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 A + MAE +R E P + + T+SIGV + T D L+ Sbjct: 407 AAYDLTAEQSAAMAETLRHLTESTPLVLSDGREIRFTISIGVVTFPQYEGGNTYD---LI 463 Query: 288 VEADTCLYRSKKDGRNRTSTMRYGEEV 314 AD LY++K GRNR +R E++ Sbjct: 464 GLADEQLYKAKAQGRNRVC-LRLVEDI 489 >UniRef50_A9C2H0 Diguanylate cyclase n=2 Tax=cellular organisms RepID=A9C2H0_DELAS Length = 496 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 91/326 (27%), Positives = 165/326 (50%), Gaps = 20/326 (6%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMP--------AIALIVSVIASVV 52 M+A WFS + + ++ +L + P Q +AL +S ++ Sbjct: 160 MMAMWFSSELM-HMTLLLPVLLSLPAKLEPLSWRSQPFKQTAQALLPLLALAISESIAIY 218 Query: 53 IGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 +GG G+L+ +PA++ CA+RY V LL V+ A+++ + V+ S G+ + F Sbjct: 219 LGGPGALSLTMPAMLLCAMRYRLFVVALLNLVSCAIKL-ATFSHVLFSSPGTE--LETTF 275 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSL 169 S RLG+A ++I P+ V+ ++ A ++ ++ + D LT + +R+ E + Sbjct: 276 SFRLGLAMLSIGPLAVACTLMAFKDMLSKLRHAVNHDALTGLLARTSFLERAQRTLERLQ 335 Query: 170 KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 ++ Q +++LD+D+FK IND +GH GD+VL + + + + L+ R+GGEEFAV Sbjct: 336 RERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVSARLSQALRPHELIGRLGGEEFAVL 395 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 +P + V +A+++ + + T+SIG+G +Y L + L+ Sbjct: 396 LPGADCVTARAVAQRLCEATREIRIDMNDGAAICPTLSIGIGCTNMAYPPLG--LSALLR 453 Query: 289 EADTCLYRSKKDGRNR--TSTMRYGE 312 ADT LY++K GR+R + R GE Sbjct: 454 MADTALYQAKASGRDRYFVAGERPGE 479 >UniRef50_C6RK39 Diguanylate cyclase n=2 Tax=Acinetobacter radioresistens RepID=C6RK39_ACIRA Length = 445 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 17/319 (5%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPR--------FKAEQMMPAIALIVSVIASVV 52 + WFS + +LI+P +L L + + + ++P L+ S+ S Sbjct: 130 IFGYWFSAELQNAILILPLILNLPYQKGIHQIFRPADGPYSFLHILPIFVLLFSLSLSYY 189 Query: 53 IGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 G G++ +P+ ALIWCA+ Y L+T ++ +++ + + + +M Sbjct: 190 DSGPGAILYPIAALIWCALNYRHFTVALITSISCFYIAFFMSDKYLTLYPEQYYL--EMI 247 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSL 169 S R GI TMAI P+ VS + L++++ D LT +R + L Sbjct: 248 SLRFGIITMAIAPLTVSSINRIRSQLIRELQHHVAHDELTASLTRRQFMRSAHLLLRQRT 307 Query: 170 KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 +++Q L V++LDID+FK IND YGH+ GD+ L A I++ + L R+GGEEFA+ Sbjct: 308 QESQSLAVLMLDIDHFKLINDKYGHQAGDEALRACAAVIRRSLRGYDLFGRLGGEEFAIV 367 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMV 288 + V P + +AE+IR+ ++ +T + +SIG+ + + L+ Sbjct: 368 LLDVGPAEAFEIAERIRETLKTHIIQLDAETQFSIRISIGLTLFNPAVPH---NIEALLH 424 Query: 289 EADTCLYRSKKDGRNRTST 307 +AD LY +K+ GR+R Sbjct: 425 KADLALYEAKRSGRDRVVI 443 >UniRef50_C3JIZ7 Diguanylate cyclase n=2 Tax=Rhodococcus erythropolis RepID=C3JIZ7_RHOER Length = 471 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 150/321 (46%), Gaps = 20/321 (6%) Query: 5 WFSEQFSTGVLIVPCMLTLA-------IPGVLPRFKAEQMMPAIALIVSVIASVVIGGAG 57 WFS +F + IVP +LT P + ++P L V +I VIGGAG Sbjct: 158 WFSSEFVNYMTIVPLVLTFPSLRRVDREPKAVATLLRRSVVPTALLAVCIILEWVIGGAG 217 Query: 58 SLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG 117 ++AF +PAL+ A+ VT +LT V+ A +VL A+ + +S S P S ++G Sbjct: 218 AIAFAMPALVTAALLTNVFVTSVLTAVSTAWTLVLTADGHLGLS--SEGVSPVSASVQIG 275 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA------LKSPSLKQ 171 ++ +A+ PI V+ + ++ + D LT R P Sbjct: 276 LSLLAVAPIAVACVILERRRALEALTQAVTHDDLTGALRRDEFLRRGGSVTGATDPRRHS 335 Query: 172 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + ++V+++D+D+FK +NDN GH GD L FA +++ + DK L AR+GGEEF V + Sbjct: 336 GRPVSVLMMDLDHFKMVNDNLGHRAGDTALVSFADQVRRHLDDKHLFARLGGEEFVVLMA 395 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 V+ AE IR+ TVSIGV D +L+ AD Sbjct: 396 GVDLEGATETAEMIRRAQAENSSAVLGD-FGPTVSIGVACS----PHGDADLTQLVDCAD 450 Query: 292 TCLYRSKKDGRNRTSTMRYGE 312 LYR+KK RNRT + G Sbjct: 451 EALYRAKKLDRNRTVALTVGS 471 >UniRef50_C6DJJ8 Diguanylate cyclase n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DJJ8_PECCP Length = 480 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 156/322 (48%), Gaps = 23/322 (7%) Query: 5 WFSEQFSTGVLIVPCMLT----------LAIPGVLPRFKAEQMMPAIALIVSVIASVVIG 54 WFSE+ S+GV+ V L ++ + FK + +I+ IAS+ I Sbjct: 164 WFSEELSSGVIFVFLFLKVTRNVKNIFKISTSSIKKTFKKPLFILYPIIIIFCIASLNIT 223 Query: 55 GAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI--SVGSPFSIPQMF 112 + LI+ ++ ++ L+ TG + N +I++ ++ + + Sbjct: 224 ---LSVLAILPLIYLSLSHSFNKIILMCTATGIALNYIYINRLINVHDTIEKEYLFELSY 280 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ- 171 ++ + + I ++ SF + +K++ L ++ D LT + +R L + + + Sbjct: 281 LFQINTSVIIITVLIASFFINKNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSTR 340 Query: 172 ---TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + +++++LDID+FK +ND YGH GD V+ F+ +++ + L+ R GGEEF + Sbjct: 341 DGDNKIMSLLVLDIDHFKKVNDTYGHAVGDNVIREFSTTLKQYTRPQDLLCRWGGEEFLI 400 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + ++ D L +AE+IR +E P + T SIGV + L +DF++ Sbjct: 401 IIQGLSVNDCLDIAERIRSIIEGAPLAISDGHIVRCTTSIGVSFFQ---LERIEDFHEAF 457 Query: 288 VEADTCLYRSKKDGRNRTSTMR 309 EAD LY +K+ GRNR ++++ Sbjct: 458 KEADELLYMAKEQGRNRVNSVQ 479 >UniRef50_D0KF92 Diguanylate cyclase n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KF92_PECWW Length = 489 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 17/317 (5%) Query: 5 WFSEQFSTGVLIVPCMLTLA--IPGVLPRFKAEQMM----PAIALIVSVIASVVIGGAGS 58 WFSE+ S+GV+ V L + I VL + M P L +I + + Sbjct: 164 WFSEELSSGVIFVFLFLNITKKIKNVLKISQISIKMTIKKPFFILYPLIIIFCIASSNIT 223 Query: 59 LA-FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI--SVGSPFSIPQMFSAR 115 L+ + LI+ ++ + ++ TG + N +I + + + + + Sbjct: 224 LSVLAILPLIYLSLSLSFNKIVVMCSATGIALNYIYINRLIGVHNKIEKEYLFELSYLFQ 283 Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS--PSLKQTQ 173 + + + I + SF + +K++ L ++ D LT + +R L + + + S++ + Sbjct: 284 INTSVIIITALTASFFINGNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSIRDGE 343 Query: 174 H--LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + +++++LDID+FK IND YGH GD V+ F+ I++ + L+ R GGEEF + + Sbjct: 344 NKMMSLLVLDIDHFKKINDTYGHAVGDNVIRGFSTAIKQHTRPQDLLCRWGGEEFLIIIQ 403 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 ++ + L +AE+IR +E + T SIGV +L +DF+ EA Sbjct: 404 GLSKNECLEIAERIRTIIEGSSLAISNGHAVRCTTSIGVSFF---HLERIEDFHDAFKEA 460 Query: 291 DTCLYRSKKDGRNRTST 307 D LY +K+ GRNR ++ Sbjct: 461 DKLLYIAKEQGRNRVNS 477 >UniRef50_C3JRE9 Diguanylate cyclase n=2 Tax=Rhodococcus erythropolis RepID=C3JRE9_RHOER Length = 489 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 12/303 (3%) Query: 17 VPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQ 76 +P L + R A +P +A V ++ I G +L P+PAL+WCA R + Sbjct: 159 IPSSLAEFRRKLTARTVAALSVPLLATAACVPIALSIEGPIALVLPIPALLWCATRISVP 218 Query: 77 VTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN 136 T ++ V +++ + +DI + + + + + +A+ PI V+ + Sbjct: 219 STAFVSVVWSVWSLMMAGSGRLDIGDQAASTWNEDVITSIAVTLIALGPIAVACATEERR 278 Query: 137 SLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYG 193 + +++ L +FD LT V SR EA + + + + +++LD+D+FKSIND +G Sbjct: 279 AAERELFLAVEFDHLTGVLSRGAFLGHAEAELADAARTQSPVGLLMLDLDHFKSINDTHG 338 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR-KGVELQ 252 H GD VL+ FA + D L+ R+GGEEFAV +P + + +AE +R VE Sbjct: 339 HMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAVLLPDCSFTRAIDVAEAVRGAQVE-- 396 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 + + TVS+GV + + LM AD LY +K+ GRN R G Sbjct: 397 --YSAESDVTSTVSVGVAWVDHATPA----LSTLMSVADEALYDAKRAGRNLVKVHRVGN 450 Query: 313 EVV 315 + V Sbjct: 451 DTV 453 >UniRef50_Q2RNW0 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RNW0_RHORT Length = 360 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 132/274 (48%), Gaps = 24/274 (8%) Query: 46 SVIASVVIGGAG-------SLAFPLPALIWCAVRYTPQVTCLL-TFVTGAVEIVLVANSV 97 +VI +VV+GG ++ FP+ R V+ + T T V I+ V + Sbjct: 99 AVILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTATVGVTILAVLDGA 158 Query: 98 IDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSR 157 S +PF++ +A C ++ F +Q+ A D LT + +R Sbjct: 159 QGFSWIAPFNLA---------GALAGCTVLAYFYEGTRAKAARQLETLAKSDPLTGLANR 209 Query: 158 SGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGD 214 GL +A L + L++++LD+D+FKSIND YGHE GD VL A I+ ++ Sbjct: 210 RGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSINDRYGHEAGDGVLCHVAHVIKGMIRA 269 Query: 215 KGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRA 274 L+AR+GGEEFA+ +P + +AEKIRK +E +L +TVSIGV Sbjct: 270 NDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTALIGPGGSLSVTVSIGVAELDP 329 Query: 275 SYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 Y DF L AD LY++KK GRNR S Sbjct: 330 QYP----DFAALFSSADHRLYQAKKAGRNRVSAA 359 >UniRef50_C7LVZ4 Diguanylate cyclase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVZ4_DESBD Length = 483 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 18/293 (6%) Query: 23 LAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLT 82 L +PG LP + + + + + + + + G A L C P++ L+T Sbjct: 201 LFLPGTLPHAQQAEWINHLLSVAARLGKQEVRGYQVSALELKD---CKPGNPPELEELIT 257 Query: 83 FVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQV 142 + L + + + S ++ RL I + A + ++ ++ Sbjct: 258 L-----PLTLGSEPFGALVICSQ-DASKLGQDRLRILSSAANHLALAMRNGL---EFRKT 308 Query: 143 ALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDK 199 RAD D LT++ +R L+ + +H L++M++D+DYFKSIND YGH+ GD Sbjct: 309 KARADHDGLTRISNRHHFDIRLREEMKRHQRHQDELSLMMIDLDYFKSINDTYGHQAGDM 368 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 VL + + + + AR GGEEF V +P ++AE++R + F Q+K Sbjct: 369 VLQEVGKILNNTLRESDFPARYGGEEFVVILPQTREDQAWILAERLRSQIGQTFFRSQKK 428 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 +T SIG+ + LT L+ ADT LY++K +GRN E Sbjct: 429 RFRVTASIGIAGIKPCALTPP---ETLLRNADTALYQAKTNGRNMVCCSAIEE 478 >UniRef50_Q2SME0 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SME0_HAHCH Length = 427 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 71/273 (26%), Positives = 129/273 (47%), Gaps = 15/273 (5%) Query: 41 IALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVI-- 98 +A + ++ +++ G++ F +P IW R + L + V E + Sbjct: 159 LAYLHTLRETLLFSALGAIVFIIPFGIWEGSRLVRTLNHLTSAVNRMAEGEFKQQVPVKS 218 Query: 99 DISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRS 158 + VG+ + + +L A + S I +Q+ + D LT +Y+R Sbjct: 219 EDEVGALAKAFNLMNTQLHEAYKNL-----EDSRNKIAKQAEQLKELSIRDELTGLYNRR 273 Query: 159 GLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK 215 E L + +L+ ++L DID+FK IND Y H GD+VL A+ + + + Sbjct: 274 FFNEEVKVLHANALRYGNGFCLVLGDIDFFKRINDGYSHVVGDEVLKQVAKILMNSIRNS 333 Query: 216 GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRAS 275 +VAR GGEE +A+P+ +P + M E+IRK +E P+ + + +T+S G+ Sbjct: 334 DIVARYGGEEMVLALPNTSPQAAMEMMERIRKTIEQHPWDSIAEGMKVTMSFGICD---- 389 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 T + F ++ AD LY++K +GRN+ ++ Sbjct: 390 -ETNGEHFEHMLAVADELLYKAKNNGRNQVCSL 421 >UniRef50_A8FZ07 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8FZ07_SHESH Length = 298 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 20/284 (7%) Query: 44 IVSVIAS-VVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV 102 I+ V+ S +VI GA LA + A +W VR P ++ + I++ + + Sbjct: 4 ILPVLGSGLVISGALLLAMAI-APVWKIVRQLPTGGLRYSWGFLILLILIFIAGYVIYAK 62 Query: 103 GSPFSIPQMFSARLGIATM---AICPIMVSFSVAAINSLMKQ--VALRADFDFLTQVYSR 157 SP Q+F + I ++ S S+ +M+ + D L +++R Sbjct: 63 FSPVQFSQLFDLVVPIIFFGGAIFVFVVCSLSLRTTRDIMQNYALKQENITDSLMGIFNR 122 Query: 158 SGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGD 214 L LK + + +Q L++ L+DID+FK +NDNYGH+ GD VL A+ I+ + + Sbjct: 123 RYLDRRLKDETERALNYSQPLSIFLIDIDHFKQVNDNYGHQVGDLVLKNIAQLIKHSLRE 182 Query: 215 KGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK------TLYLTVSIG 268 ++AR GGEEF V +P +AE++R VE T ++ ++ +TVSIG Sbjct: 183 SDVLARFGGEEFVVILPRTKDSTSYTLAERLRHVVEDFQLTLPEESDKDSLSISVTVSIG 242 Query: 269 VGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 V A D L+ AD LY++K++GRN+ T + G+ Sbjct: 243 VAGLNAQ----CKDCQCLIENADRALYQAKRNGRNQVITSKSGK 282 >UniRef50_D1U9C4 Diguanylate cyclase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9C4_9DELT Length = 498 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 7/183 (3%) Query: 132 VAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 +A N+L+ K+V LRAD D LT++Y+R E L ++ ++ L+++++D+D+FK Sbjct: 310 LALRNALIFKEVKLRADRDGLTRIYNRHSFDERLIYEIKRRRRYNHDLSLLMVDLDHFKQ 369 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH+ GD VL + + L AR GGEEF V +P + +AE+IR+ Sbjct: 370 VNDTYGHKAGDMVLRKVGEILTETFRTTDLAARYGGEEFVVLLPHTSEEAAWKLAERIRE 429 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 ++ F + +T SIGV S A LT DD L+++AD LY++K +GRN Sbjct: 430 SIQGCVFRFDGHEFSVTASIGVASVEAGALTRDDD---LLIKADKALYKAKNNGRNMVVI 486 Query: 308 MRY 310 R Sbjct: 487 SRP 489 >UniRef50_Q4KDW8 GGDEF domain protein n=6 Tax=Pseudomonas RepID=Q4KDW8_PSEF5 Length = 315 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 95/181 (52%), Gaps = 4/181 (2%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKS 187 V+ + A+ +Q+ + D LTQ+Y+R + L+ + + +++LDID+FKS Sbjct: 137 VAINSLALQKANQQLQHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIALLMLDIDHFKS 196 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND +GH+ GD V+ + I + V D + R GGEEFA+ +P + +AE++R+ Sbjct: 197 INDRHGHQAGDAVIKRVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAGARTLAERLRQ 256 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 VE Q + + T+S+G+ D L+ AD LY SK+ GRNR ST Sbjct: 257 SVEEQEVIHNGQAIAFTISLGIACLDRPAR----DHRCLIEWADQALYASKRAGRNRVST 312 Query: 308 M 308 Sbjct: 313 Y 313 >UniRef50_B5JX81 Diguanylate cyclase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX81_9GAMM Length = 384 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 85/336 (25%), Positives = 151/336 (44%), Gaps = 38/336 (11%) Query: 1 MLADWFSEQFSTGVLIVPCMLTL---------------AIPGVLPRFKAEQMMPAIALIV 45 ML + + + + +IV +L A L Q A+ +++ Sbjct: 53 MLGNGLNNEVANTAIIVILVLAACCGIGFILGFKADATAWTSKLYAHICIQFFVAVNMVL 112 Query: 46 SVIASV--VIGGAGSLAFPLPALIWCAVR------YTPQVTCLLTFVTGAVEIVLVANSV 97 + A V V+ G + L I R +T + L + A+E++ A+ + Sbjct: 113 AYYAGVFSVVSGVALVGGSLTGFILFNERVVYGGLFTGALATLALIILSALEVIPYASVI 172 Query: 98 IDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK---QVALRADFDFLTQV 154 + G+P + L + ++V+ + +AI + +V + D LTQV Sbjct: 173 --ETNGTPLHHNATWLILLLGLSTPYIGLLVAMNSSAIRRWRQRESEVRQLSTTDPLTQV 230 Query: 155 YSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQK 210 +R L E L + + L+++++D+D+FKSIND +GH GD+ L V AR +++ Sbjct: 231 ANRRHLLERLNLEISRCERSGHSELSLLMMDLDHFKSINDEHGHLFGDEALRVTARVLRE 290 Query: 211 IVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGV 269 + LV R GGEEF + +P P L +AE+ R+ +E + L++T SIG+ Sbjct: 291 QSRNTDLVGRYGGEEFCLLLPDTGPQGALQIAERCRQALEQADIDREDGEVLHITTSIGL 350 Query: 270 GSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 + + + D L+ AD LY++K+ GRNR Sbjct: 351 ATYQ-----MGDTNESLLHRADEALYQAKEQGRNRI 381 >UniRef50_A8V0B5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V0B5_9AQUI Length = 463 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 12/232 (5%) Query: 80 LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLM 139 L+TF+ + ++ S + + I + S I + +++ FSV + Sbjct: 240 LITFIPVFNLNNHLMGYLVRYSKDNTYPI-ILKSFYTNITLSFLLAVILGFSVYIFLKDL 298 Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHEC 196 ++ ++ D LT +Y++ E L+ + + + L++++ DID+FK IND YGH+ Sbjct: 299 EKFRYLSETDRLTGLYNKGKFNEVLQREIQRAKRYKRPLSLIIFDIDHFKKINDTYGHKV 358 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD+VL A+ I+K + AR GGEEF + P N +AEK+R+ VE F Sbjct: 359 GDEVLKALAKLIKKNIRKTDFAARWGGEEFVILAPETNVEGAKKLAEKLRQAVETYKFPT 418 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 K +T+S+GV L + +V AD LY++K+ GRNR Sbjct: 419 VGK---VTISLGVAQ-----LEPDEKPEDFIVRADMALYKAKEGGRNRVEIA 462 >UniRef50_Q310L5 Diguanylate cyclase (GGDEF domain) n=2 Tax=Desulfovibrio RepID=Q310L5_DESDG Length = 525 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 7/186 (3%) Query: 127 MVSFSVAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 M ++A N+L+ +++ L+AD D LTQ+++R L+ + + LT+M+LDI Sbjct: 331 MRHLALAVKNALLFREMRLQADHDGLTQLHNRRHFDTRLREELDRHGRYSMPLTLMMLDI 390 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK IND +GH+ GD VL A +++ + AR GGEEF +P + ++A Sbjct: 391 DYFKQINDRFGHQAGDAVLRELASVLRETIRTTDYCARYGGEEFVAILPHTDEQQARVLA 450 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++RK +E + F KT+ TVSIG+ + LT D +L+ EAD LY +K +GR Sbjct: 451 ERLRKNIESRVFRHHGKTIQATVSIGLTGFKPGALTPRD---ELVREADAALYLAKANGR 507 Query: 303 NRTSTM 308 N T Sbjct: 508 NVVCTF 513 >UniRef50_B8DLP9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLP9_DESVM Length = 730 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 8/179 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKS 187 +++ A D LT + +R EAL+ + + L ++ +D+D FK Sbjct: 535 DTTEHREAQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALISIDVDRFKR 594 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND +GH GD+VL A + V D V R+GGEEFAV +P P + + +AE++R Sbjct: 595 VNDTWGHAVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAMAVAERLRA 654 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 GVE P L +T+S+GV + D + L+ EAD LYR+K GRNR Sbjct: 655 GVEAAPLLTTAGPLTVTLSLGVSASPPC-----DGADTLLREADRALYRAKAGGRNRVE 708 >UniRef50_A3WKT4 GGDEF domain protein n=2 Tax=Alteromonadales RepID=A3WKT4_9GAMM Length = 364 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 45/327 (13%) Query: 14 VLIVPCMLTLAIP--------------GVLPRFKAEQMMPAIALIV------SVIASVVI 53 V L L P F + M AI+LI S + +++I Sbjct: 32 VAFFFIFLILNSPILAWVNLLSIAMYLTAYWAFGQRKNMLAISLIWLEVLYHSALGTLMI 91 Query: 54 GGAGSLAFPLPAL---IWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQ 110 G + L I+ ++ P V LL + + L S P P Sbjct: 92 GWDSGFHYFLLMFVPAIFVSMSLKPAVLTLLGLWVYYLSLDLF-------SWYYPAMQPI 144 Query: 111 MFSARLGIATMAICPIMVSFSVAAINSLMK------QVALRADFDFLTQVYSRSGLYEAL 164 +A +G+ + + + F A+ L K Q+ A D LT++ +R + E L Sbjct: 145 NATAVVGVHIFNLTVVFIMFGYLALYYLNKVNLTHDQLRFYATTDPLTKLRNRRHMSELL 204 Query: 165 KSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARM 221 K + ++++V+LLD+D+FKS+ND +GHE GDKVL + A ++ V D V+R Sbjct: 205 KRALQNKHAEQRNVSVLLLDLDHFKSVNDTHGHEVGDKVLRITADILRDTVRDHDKVSRW 264 Query: 222 GGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP-FTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF V +P N +AE+IRK + P T + + LT SIGV + Sbjct: 265 GGEEFLVFLPRTNLNHAAQVAERIRKAIAKYPWHTVINENIQLTTSIGVSELKPD----- 319 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTST 307 D N L+ AD LYR K+ GRN Sbjct: 320 DSVNTLVKRADDALYRGKEAGRNWVEL 346 >UniRef50_C4XS30 GGDEF domain protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XS30_DESMR Length = 498 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 58/171 (33%), Positives = 91/171 (53%), Gaps = 6/171 (3%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHEC 196 QV +RAD D LT++++R E L + ++ ++++++DID+FK IND YGH Sbjct: 313 NQVKIRADHDGLTRIHNRRAFDERLIDELRRHQRYRHAMSLLMVDIDHFKGINDRYGHLV 372 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD VL + + + AR GGEEF V +P ++AE++R + F Sbjct: 373 GDHVLREVGSILSETLRSTDFTARYGGEEFVVILPQTAEEQARILAERLRGAIAEARFVH 432 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + +TVSIGV + + LT D L+ +AD LY++K GRN+ T Sbjct: 433 DGEDFSITVSIGVSALQPGALTRRKD---LLEKADKALYQAKHLGRNQVCT 480 >UniRef50_D2L2K3 Diguanylate cyclase with GAF sensor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2K3_9DELT Length = 499 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECG 197 QV +RAD D LT++++R E L + + +++++LDID+FK IND YGH G Sbjct: 314 QVKVRADHDGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKGINDTYGHLVG 373 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL R + + + AR GGEEF + +P ++AE++R + F Sbjct: 374 DHVLREVGRLMTETLRSTDFTARYGGEEFVIILPQTAEEQSRVLAERLRGLIADARFVHD 433 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM-----RYGE 312 +TVSIG + L+ D L+ +AD LY++K GRN+ T R GE Sbjct: 434 GHPFSITVSIGAATLLPGALSKRKD---LLDKADKALYQAKTLGRNQVCTALGPVSRTGE 490 Query: 313 EVV 315 E V Sbjct: 491 EAV 493 >UniRef50_Q1N175 Diguanylate cyclase (GGDEF domain) n=1 Tax=Bermanella marisrubri RepID=Q1N175_9GAMM Length = 294 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 14/202 (6%) Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALR------ADFDFLTQVYSRSGLYEALKSPSL 169 LG I P +S +A + S +++ A D LT +Y+R +E + Sbjct: 97 LGAVDYVIKPYSLSVLLARVRSALREKERLDLMEKWATTDPLTGLYNRRFFFEQAQRELE 156 Query: 170 KQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEF 226 + ++ + ++LDID+FK +ND YGH GD VL A+ ++ L R GGEEF Sbjct: 157 RVQRNETDASFIILDIDHFKKVNDEYGHLVGDDVLEGLAKLFKETFRKVDLCCRFGGEEF 216 Query: 227 AVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKL 286 + +P + LL+AE+ RK VE F ++ L++T+S+GV S + + Sbjct: 217 VICLPDTDTEGALLVAERTRKKVEELSFNTEKGPLHVTISLGVSSANENT-----TLEDM 271 Query: 287 MVEADTCLYRSKKDGRNRTSTM 308 + AD LY++K++GRNRT ++ Sbjct: 272 LKRADDALYQAKQNGRNRTESL 293 >UniRef50_C6BW86 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BW86_DESAD Length = 555 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 3/180 (1%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFKSIND 190 ++ ++++ A D LT + +R L + L +++ Q ++M++DID+FK IND Sbjct: 364 KVDRTVQELQKSAVTDQLTGLPNRRYLMKEGTRLVDIAIRAGQPCSLMIMDIDHFKVIND 423 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD VL ++ Q++V ++AR GGEEF V P + G +AE++R+ VE Sbjct: 424 TYGHTVGDIVLQQISKAFQEVVRSSDIIARYGGEEFVVVAPGSDIDSGRTLAERLRQSVE 483 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 + F ++ L T+SIGV D + ++ AD LY++K GRNR Sbjct: 484 ARIFNNDEQPLTCTISIGVSHYATDIKFGVDAYEDMLARADNALYKAKDTGRNRICIAEP 543 >UniRef50_C6WYA7 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYA7_METML Length = 591 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 59/184 (32%), Positives = 96/184 (52%), Gaps = 8/184 (4%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 I S + L +++ +A DFLT V +R E + + ++ L+ +LDI Sbjct: 407 IGTSTDITERKQLEEELKRQARIDFLTGVSNRRYFMEQAEQEIQRTSRYDTPLSFFMLDI 466 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D FK +ND YGH+ GD VL A ++ + + ++ R+GGEEFA+ +P + +A Sbjct: 467 DLFKQVNDTYGHKSGDIVLKRMASVCRETLREIDIIGRVGGEEFAILLPETDKAQAAEVA 526 Query: 243 EKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 E++R + + + + TVSIGV S +S D+ + L+ AD LY++KK G Sbjct: 527 ERLRSVLADEKVPTEAGAPIQFTVSIGVASRVSSQ----DNIDMLLNLADEALYQAKKYG 582 Query: 302 RNRT 305 RNR Sbjct: 583 RNRV 586 >UniRef50_B4U6Y8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6Y8_HYDS0 Length = 772 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 11/187 (5%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLL 180 + + L + ++ D LT +Y+R L L+ + + + L++++ Sbjct: 593 VAVFTFVDITKEKELSDMLLKQSTEDPLTGIYNRRYLENKLEEYVKLAKRHDRPLSLIMF 652 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND++GH+ GDKVL A+ + + + + + AR GGEEF + P D + Sbjct: 653 DIDFFKHINDSFGHDVGDKVLKAIAKVVSENIRNTDIFARYGGEEFVIIAPETTKEDAKI 712 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AEK+R + F ++ + +T S GV S L D L+ AD LY +KK Sbjct: 713 LAEKLRSLIRNLHF---EEGINVTCSFGVAS-----LEKHDTKETLLKRADEALYEAKKT 764 Query: 301 GRNRTST 307 GRN+ Sbjct: 765 GRNKVVV 771 >UniRef50_B1WQB8 Putative diguanylate cyclase n=2 Tax=Cyanothece RepID=B1WQB8_CYAA5 Length = 493 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 74/256 (28%), Positives = 122/256 (47%), Gaps = 16/256 (6%) Query: 58 SLAFPLPALIWCAVRYTPQVTCLLTF-VTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 +A+PL L A R T + L VT E+ +A S+ + I ++ AR Sbjct: 241 IIAYPLEQLTHIAQRVTQESNFQLKAPVTTQDEVGKLATSMNQLIQWIDEHITELKEARQ 300 Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-- 174 + V + +K++ + D LTQ+++R E L + + Sbjct: 301 TLEKR------VEQRTIELQQALKKLKALVNLDGLTQIFNRRYFDEVLYREWQRGRREKS 354 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPS 232 ++++L D+DYFK N+ YGH GD L A+ I++ V LVAR GGEEF + +P+ Sbjct: 355 VISLILCDVDYFKIYNETYGHLGGDSCLQEVAQGIRRQVKRPSDLVARYGGEEFVILLPN 414 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTL--YLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 + L +AE IR +E + + ++T+S+GV S TD++ L+ EA Sbjct: 415 TDLNGALALAEMIRNAIEAMNIPHENSLVSDHVTISMGVTSK---IPQETDEYEHLIEEA 471 Query: 291 DTCLYRSKKDGRNRTS 306 D LY++K++GRN Sbjct: 472 DDALYQAKENGRNCVC 487 >UniRef50_B3EBI3 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ RepID=B3EBI3_GEOLS Length = 307 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 8/173 (4%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGH 194 ++ A D LT V++R L L+ + +H L++M+LDID+FK IND +GH Sbjct: 131 YEHKLIQMAKVDGLTGVFNRRYLDTRLQEELERSRRHGNPLSIMMLDIDHFKEINDTHGH 190 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 CGD L + + ++V ++ R GGEEF +P + L++AE+ R V F Sbjct: 191 ICGDYTLRKISELLLELVRTSDILGRYGGEEFCCILPETSFEQALVLAERCRTQVAASQF 250 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + +TVSIGV L D + ++ AD LY++K+ GRNR + Sbjct: 251 SCTDHQSRVTVSIGVTD-----LHRDDTLDSIIKRADDALYQAKRTGRNRVCS 298 >UniRef50_D1U434 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U434_9DELT Length = 1051 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 10/198 (5%) Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT 172 S +LG A+ I + + ++ A D LT +++R E + ++ Sbjct: 860 SFQLGGRWYAVATI---RDITERKATEARLHELATTDSLTGLFNRRRFMELAEREFMRTK 916 Query: 173 QH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 ++ LT++++DID+FK +ND +GH GD+VL AR + + + ++ R+GGEEF V Sbjct: 917 RYQGALTMLMMDIDHFKRVNDTHGHGVGDEVLRELARISRTALRELDILGRLGGEEFGVL 976 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 +P + + +A+++R+ +E TL +TVSIG + + L+ Sbjct: 977 LPETDAGPAMEVAQRLRRAIEKASMATDAGTLRITVSIGAATSN----NDAETVETLLKR 1032 Query: 290 ADTCLYRSKKDGRNRTST 307 AD LY +K+ GRN+ Sbjct: 1033 ADVALYEAKQSGRNKVVA 1050 >UniRef50_C0QM24 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM24_DESAH Length = 488 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 10/199 (5%) Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQH 174 + + I +++ + I S K++ A D LT VY+R + ++ Sbjct: 291 VFSFGIIGLILIVTNLTIASFQKRLTKMASTDKLTGVYNRRAFDIIIDQTLKEIQRKQTP 350 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L+++L D+D+FK +ND YGH GD ++ + + + ++ R GGEEF + + + Sbjct: 351 LSIILFDLDHFKRVNDTYGHLAGDYIIQTTVGTAARTIRNSDILCRWGGEEFLILLKGCD 410 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 D + AEKIR V QP + + +T+S+GV T D L+ AD L Sbjct: 411 LGDAMKTAEKIRTAVASQPARYGDDQICVTISVGVTEH-----TGQDTKETLLKRADKAL 465 Query: 295 YRSKKDGRNR--TSTMRYG 311 Y +K G+NR T T+R G Sbjct: 466 YLAKASGKNRCETETVRPG 484 >UniRef50_C8X5B9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B9_DESRD Length = 578 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 6/182 (3%) Query: 129 SFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYF 185 + + + + A D LT +Y+R E L + + + Q L ++ LDID+F Sbjct: 399 AQDITERKRAEEHLRYLATTDELTGLYNRRHFMEILDTEIERAKRYEQSLALISLDIDHF 458 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K+IND +GH GD L A + + R+GGEEFA+ P + +AE+I Sbjct: 459 KTINDTHGHAVGDAALEHLAAQLLACKRQPDSLGRLGGEEFALIAPHTDRAGATELAERI 518 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 R +E P + +L+ T+S+GV + + D + L+ AD LY +K+ GRNRT Sbjct: 519 RSELERTPIELESTSLHPTISLGVTALN---IQDNDTIDALLKRADDALYEAKRTGRNRT 575 Query: 306 ST 307 T Sbjct: 576 VT 577 >UniRef50_B8FCK6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCK6_DESAA Length = 301 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 68/272 (25%), Positives = 123/272 (45%), Gaps = 13/272 (4%) Query: 40 AIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVID 99 A+A I + + + G + + I + +LT + V + Sbjct: 40 AVATIKPDLILLDLIMPGMDGYAVCEKIKGSPATADIPVIMLTSKAETADKVRGLEAGAS 99 Query: 100 ISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSG 159 V PF ++ + + + ++ +Q+ A+ D LT +Y+ Sbjct: 100 DYVTKPFEEGELVAR-------VNTHLRIKELYESLQETNRQLQELANRDGLTGLYNHRY 152 Query: 160 LYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 216 +A+ +++ + L+ +L DID+FK ND YGH+ GD VLS AR ++ + D Sbjct: 153 FQDAMTKDFQRAMRYHESLSCVLCDIDFFKKFNDTYGHQTGDIVLSTLARIVEDSLRDTD 212 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 276 L AR GGEEFA+ + ++AE++R+ VE F +L +T+S+GV + Sbjct: 213 LAARYGGEEFALVLYHTPAAAAFMVAERLRESVEQHEFIANDLSLSVTISVGVATYPHPD 272 Query: 277 LTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + D L+ AD LY++K++GRN+ + Sbjct: 273 IP---DHKTLIECADKALYKAKENGRNQVISF 301 >UniRef50_B8FMG8 Diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMG8_DESAA Length = 417 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 112/206 (54%), Gaps = 5/206 (2%) Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 I +A + ++ +++ I+VS + + + + + D LT++++R L Sbjct: 209 IASGLTAAISLSLLSMIWILVSRLARRLTKAYETIEVMSITDELTRLHNRRHFETRLAEE 268 Query: 168 ---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 SL+ +++M+LDID+FK +NDNYGH+ GD VL+ FA ++ V + AR GGE Sbjct: 269 ISRSLRYGSPMSLMILDIDHFKRVNDNYGHQAGDWVLTQFATLLKDNVRKADVPARWGGE 328 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRA-SYLTLTDD 282 EF V + + AEK+R+ VE F +++ +TVS+GV S S + + Sbjct: 329 EFVVILTESTISQARMAAEKVRRNVESAEFNIPDGRSIPVTVSVGVASLDMISGDEMGSE 388 Query: 283 FNKLMVEADTCLYRSKKDGRNRTSTM 308 + L+ AD LYR+K++GRNRT + Sbjct: 389 ADVLVKTADDALYRAKQEGRNRTVAV 414 >UniRef50_A0LD73 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD73_MAGSM Length = 513 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 18/243 (7%) Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV 132 + C+ +G V V+ D++V P+ IP + + S SV Sbjct: 270 HPLGFYCMPVLHSGTVGNVVQLVVEPDMAVMFPYIIPFL-----------QVFLRESSSV 318 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSIN 189 LM+++ A D LT + +R L E + + S ++ L+V+++D+D+FK +N Sbjct: 319 IESKRLMEKLRESALKDPLTGLNNRRFLEEYERTIVASSQRKEMFLSVLMMDLDHFKMVN 378 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D +GH+ GD VL A + + LV R GGEEF V + + P G +AEKIR+ V Sbjct: 379 DTHGHQVGDAVLKSLAGVLMQQTRASDLVVRYGGEEFMVVLQNERPHMGNQIAEKIRETV 438 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 E L T+SIGV + T DF+ ++ +AD LYR+K+ GRNR + Sbjct: 439 ERLKINVPGGCLQKTISIGVAE----FPTDGTDFDDVVEKADMALYRAKEQGRNRVISHS 494 Query: 310 YGE 312 E Sbjct: 495 ASE 497 >UniRef50_C6WYA9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYA9_METML Length = 548 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 58/190 (30%), Positives = 102/190 (53%), Gaps = 8/190 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVML 179 I I V ++ + L ++ +A D+LT++ +R E + S + + + + + Sbjct: 362 IRMIGVHANIHSRKLLELELNQKAHIDYLTELNNRGHFMEQAEKELSRSQRYQKDMAMFM 421 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +DID+FK IND++GH+ GD VL A ++ + + ++ R+GGEEFA+ +P N + L Sbjct: 422 MDIDFFKKINDSHGHKIGDIVLKKLADVCRQTLREVDIIGRIGGEEFAILLPETNRAEAL 481 Query: 240 LMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE++R V + + TVSIGV S ++ D+ + L+ AD LY++K Sbjct: 482 EVAERLRLAVADSKVPMKDGLPVQYTVSIGVSSVASA----DDNIDMLLSRADQALYQAK 537 Query: 299 KDGRNRTSTM 308 + GRNR Sbjct: 538 QSGRNRVCAA 547 >UniRef50_A5GCU4 Diguanylate cyclase n=2 Tax=Geobacter RepID=A5GCU4_GEOUR Length = 422 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 115/243 (47%), Gaps = 12/243 (4%) Query: 69 CAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMV 128 C ++ ++ ++ + +V + + + LGI +++ Sbjct: 189 CHRSQGYKIGSVMGALSVTIPVVTLIRETDTDKLMIVAATIGTIGLLLGITYFLTWRLVL 248 Query: 129 SFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDIDYF 185 + +A K + A D LT + +R + + L + + L +++LD+D+F Sbjct: 249 NLDMA-----QKHLKRLASTDELTGLKNRRQIMKRLDEEYQRAIRLGEPLCLIMLDLDHF 303 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K IND YGH GD VL A H++K + ++ R+GGEEF + P + +++A+++ Sbjct: 304 KKINDTYGHPFGDLVLKCVAGHMKKALRRYDVLGRIGGEEFLIVSPGTTREEAVVLAQRL 363 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 R VE++ ++ K + +TVS GV D+ L+ AD+ LY +K++GRNR Sbjct: 364 RSTVEMEKIAYEDKKVTITVSCGVAFLYKG----DDNVEILLKRADSALYIAKQEGRNRV 419 Query: 306 STM 308 + Sbjct: 420 VAI 422 >UniRef50_B3E6Y7 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ RepID=B3E6Y7_GEOLS Length = 459 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSI 188 + + +++ A D LT + +R E ++ + + +LLDID FK I Sbjct: 277 LKELREAQEKLVEMATIDSLTGLLNRRAGLERVEEELSRHQRSERAFACLLLDIDRFKKI 336 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND YGH+ GD VLS F +++ V +V R GGEEF + +P +P AEKIR Sbjct: 337 NDTYGHQAGDAVLSEFGATLRRHVRKHDIVCRYGGEEFLLLLPDTSPSAARTTAEKIRAV 396 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 P + + + +T SIG+ + + ++ AD LY +K GRNR Sbjct: 397 TAATPIMFAGRQIAVTTSIGIS-----MMQGDETAKAMIARADAALYEAKNSGRNRVVCA 451 Query: 309 RYGE 312 E Sbjct: 452 EANE 455 >UniRef50_B8DLV9 Diguanylate cyclase n=4 Tax=Desulfovibrio vulgaris RepID=B8DLV9_DESVM Length = 381 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 79/294 (26%), Positives = 126/294 (42%), Gaps = 27/294 (9%) Query: 27 GVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTG 86 G R +AL + V GG F +W + + P V G Sbjct: 79 GRTGRHVLPSTALVLALFTLSLYMVSHGGVEGSGF-----VWLFI-FPPVVMLTFGLSIG 132 Query: 87 AVEI--VLVANSVIDISVGSPF---SIPQMFSARLGIATMAICPIMVSFSVAAINS---- 137 + + +L+ I G PF Q F R +A + C I + Sbjct: 133 ILLMGALLLGVGAILFLPGDPFLYADYSQAFRIRYMLALL-CCGIFAGLAEYTRRHTQRL 191 Query: 138 ---LMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDN 191 L +Q+A A D LT + +R L E L+ + + + L++ + DID+FKS+ND Sbjct: 192 LILLTQQLAESARTDELTGLANRRALCERLEYEQVRARRTGRPLSIAICDIDHFKSVNDC 251 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+CGD VL A + + + + R GGEEF + +P + +AEK+R VE Sbjct: 252 YGHQCGDLVLQSVAGLLHDNLRHQDTICRWGGEEFLLLLPETDEAGAARLAEKLRSLVEA 311 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +++ + +T+S GV + D + + +AD LY +K+ GRNR Sbjct: 312 MEYSYHGIPVSVTLSFGVHTCGPEG-----DIDYHIRKADQKLYLAKEQGRNRV 360 >UniRef50_Q47W79 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47W79_COLP3 Length = 334 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 101/177 (57%), Gaps = 7/177 (3%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSIN 189 + + ++A + D LTQVY+R ++L+ K +H L++++LD+D+FK +N Sbjct: 155 MQLQKTLAEIAQISRIDGLTQVYNRRHWQDSLEQEYAKARRHDKKLSLIMLDLDHFKLLN 214 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 DNYGH+ GD VL + I ++ + R GGEEFA+ +P + + +A++I + + Sbjct: 215 DNYGHQGGDMVLIEVSALISTLLRVEDTFGRYGGEEFAIILPETDSAGAIELAQRICRII 274 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 PFT+ + + +TVS+GV + ++ +L+ +AD+ LY++K GRN+ Sbjct: 275 ATTPFTYNDQVIKVTVSLGVAQLSS----KESNYEELITQADSALYQAKSQGRNQVC 327 >UniRef50_C1A5L7 Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5L7_GEMAT Length = 491 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 8/194 (4%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQ 173 + T A+ I + V + + ++ A D LTQ+ +R L E + + +L+ Sbjct: 299 AVITAAVAVIQRAQMVESTMADNARLEQLAQTDPLTQLLNRRALTERITAEMERALRYDS 358 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 L ++++D+D+FK +ND YGH GD VL + + + + AR GGEEF V +P Sbjct: 359 TLALLMIDLDHFKKVNDTYGHLVGDDVLRDVGQLLGHTIRGSDITARYGGEEFLVLLPET 418 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQ--KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + + AE+IR +E PF + L LT SIGV A+ + ++ L AD Sbjct: 419 DDAGAVAFAERIRVAMEEHPFARDSMAEPLKLTASIGVAVFPAARI---ENVEDLFARAD 475 Query: 292 TCLYRSKKDGRNRT 305 LYR+K +GRNR Sbjct: 476 AALYRAKAEGRNRV 489 >UniRef50_A4VQQ9 GGDEF domain protein n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VQQ9_PSEU5 Length = 466 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 9/200 (4%) Query: 111 MFSARLGIATMAICPIMVSF--SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS 168 + S L + + I + + S+A + Q+A A+ D LT V SR L++ Sbjct: 269 VISLALSVVALLIFLLSSRYFQSIARLRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAEL 328 Query: 169 LKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 + +H L++++LDID+FK +ND +GH GD VL F+ ++ L+ R+GGEE Sbjct: 329 ARARRHNESLSLLMLDIDHFKRVNDVHGHPIGDAVLKQFSETCAGMLRAHDLLGRLGGEE 388 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 FA+ +P + +AEKIR V P + +TVSIG+ L + ++ Sbjct: 389 FAIVLPHTDAEGARCVAEKIRTAVAQTPMPTAAGDITVTVSIGLAQMEG----LPGEVDQ 444 Query: 286 LMVEADTCLYRSKKDGRNRT 305 LM AD LY +K+ GRN+ Sbjct: 445 LMARADQALYEAKRGGRNQV 464 >UniRef50_A6DDS7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDS7_9PROT Length = 750 Score = 236 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 12/182 (6%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFK 186 + ++ I L KQ+ A +D LT +Y+R+ LK S + L+++ LDIDYFK Sbjct: 578 YQLSKIKKLSKQLETMAFYDKLTNIYNRAKFKNILKEFIEYSKRYKTPLSLIFLDIDYFK 637 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 INDN+GHE GD VL + + + + + R GGEEF + +P+ + ++AEKIR Sbjct: 638 KINDNFGHEKGDLVLKEMVKVAKLSLRESDVFGRWGGEEFLILLPNTDINGAKIVAEKIR 697 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +E F + +TVS+GV L D + AD LY++KK+GRNR Sbjct: 698 DAIESHDF----DGIKVTVSLGVTQ-----LKEDDTIESFVNRADIALYQAKKEGRNRVV 748 Query: 307 TM 308 Sbjct: 749 VF 750 >UniRef50_C0QT79 Signal transduction response regulator n=1 Tax=Persephonella marina EX-H1 RepID=C0QT79_PERMH Length = 509 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 14/202 (6%) Query: 109 PQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK--- 165 + +GI + + +SF + I ++ A+ D LT +Y++ L+ Sbjct: 308 NTFIISYVGINLLVGLLLTMSFILGVIK---ERFKAMAEIDTLTGIYNKGKFNHLLQVEL 364 Query: 166 SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 S + + L++++ DID+FK IND +GH+ GD VL A+ + + AR GGEE Sbjct: 365 DRSKRYGRPLSLIIFDIDHFKKINDAFGHQAGDYVLKTLAKIVSSNIRSTDFFARWGGEE 424 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 F + P + ++AEKIRK +E PF K +T S GV D + Sbjct: 425 FVILAPETDLEGAQILAEKIRKAIEEYPFETVGK---VTSSFGVTEAF-----ENDTVDS 476 Query: 286 LMVEADTCLYRSKKDGRNRTST 307 + AD LY++K GRNR Sbjct: 477 FVKRADVALYKAKDKGRNRVEI 498 >UniRef50_C6BU46 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BU46_DESAD Length = 490 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 65/182 (35%), Positives = 99/182 (54%), Gaps = 7/182 (3%) Query: 130 FSVAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYF 185 S+A N++M ++ RA+ D LT+VY+R E L + + L+++++D+DYF Sbjct: 302 LSLALSNAIMFNKIKTRANRDGLTRVYNRRSFDERLVEEFKRHQRLNTELSLLMVDLDYF 361 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K++ND YGH GD VL AR +K +AR GGEEF + +P ++AE+I Sbjct: 362 KAVNDTYGHMAGDMVLEKVARMFEKTFRSTDFIARYGGEEFVILLPHTREDQAEMLAERI 421 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 R +E T+Q K+ +T SIGV S R L +++ +AD LY +K GRNR Sbjct: 422 RAKIESCAMTYQDKSFNITASIGVSSVRPGSLEKDT---EIVRKADEALYDAKMQGRNRV 478 Query: 306 ST 307 Sbjct: 479 VV 480 >UniRef50_Q07Y51 Diguanylate cyclase n=2 Tax=Alteromonadales RepID=Q07Y51_SHEFN Length = 359 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 151/319 (47%), Gaps = 25/319 (7%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALI-VSVIASVVIGGAGSL 59 ++ +WF++ F ++ ++ L I G+L KA + L+ + + SV++ G S Sbjct: 33 VVNNWFND-FKLYAMVELAVVCLCI-GILFIHKATPNLTLWCLVFLFALYSVILIGIYSA 90 Query: 60 AFPLPALIWC----AVRYTPQVTCLLTFVTGAVEI----VLVANSVIDISVGSPFSIPQM 111 +F W + Y L T T I +LV ++DI+ P +I Sbjct: 91 SFNSGLFTWLFIIPVLSYLLLGIKLGTLYTCVYMIGGVGILVNALLLDIATIYPITI--- 147 Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSR---SGLYEALKSPS 168 A + + AI + S+ + ++++ A D LT + +R +++ L Sbjct: 148 --ANIVLCLAAIWALSFSYEYKRAEA-VERLQKMASLDPLTGLNNRLLLDSIFDMLCESL 204 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 +Q Q ++V++LD+D+FK IND YGH+ GDKVL +R I + R+GGEEF + Sbjct: 205 PEQHQSVSVLILDLDHFKRINDQYGHDVGDKVLVEVSRIINSVRRQNDWAFRLGGEEFCM 264 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 +P N +AE++RK VEL L L++SIGV + F+++ Sbjct: 265 LIPDSNLQQAGQIAERLRKAVELVTV-IDGSELNLSISIGVSR----WPEDGAHFSQIYK 319 Query: 289 EADTCLYRSKKDGRNRTST 307 AD LY++K GRN+ T Sbjct: 320 TADARLYQAKTLGRNKVIT 338 >UniRef50_C7LRA7 Diguanylate cyclase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LRA7_DESBD Length = 495 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 8/204 (3%) Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK-- 170 S L + + ++V + +N +++AL A D LT +R E+ + Sbjct: 296 SIVLVLVVAGLSTLLVRGQI-RLNRQSRELALAASTDMLTGALNRRAFMESASREFARVC 354 Query: 171 -QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 HL+ +++D+D+FK++ND YGH GD VLS A +I + + + R GGEEF + Sbjct: 355 RYGGHLSCIMIDLDHFKNVNDTYGHAAGDLVLSSSAHYIASRLREPDMFCRYGGEEFVIL 414 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 +P + +AE++R G+ + L LT S GV A T + L+ Sbjct: 415 LPGTDRNGAATVAEELRAGLAGLDLQRGDEKLPLTASFGVAEIHAQCAT----LDTLLSL 470 Query: 290 ADTCLYRSKKDGRNRTSTMRYGEE 313 AD LY +K++GRNR ++ Sbjct: 471 ADQALYEAKENGRNRVCLAPRQQQ 494 >UniRef50_C4LFT4 Diguanylate cyclase n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LFT4_TOLAT Length = 392 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 14/243 (5%) Query: 72 RYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFS 131 R +TC+L + + S + S L + + I + +SFS Sbjct: 154 RLMFALTCILATAGSLLRFLTYQ------YEPSYSLLNTNISNLLLVFNVIIVLLGLSFS 207 Query: 132 VAAINS--LMKQVALRADFDFLTQVYSRSGLYEA----LKSPSLKQTQHLTVMLLDIDYF 185 + I S L +++A A +D LT +Y+R GL E S +V ++DIDYF Sbjct: 208 IMLITSQWLQQKLAAFASYDALTGIYNRYGLNEQSAALFNSDGKLSATDYSVAMIDIDYF 267 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K ND+YGH GD VL A +++ + ++AR GGEEF V +P N D L AE++ Sbjct: 268 KKTNDDYGHPVGDAVLKEVAERLRQNIRHHDILARYGGEEFIVVLPGTNITDALHWAERV 327 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 R V +P Q + +T+SIGV + F++ + +AD LY++K++GRN+ Sbjct: 328 RAQVAAKPIQVDQHAIQITLSIGVVALPGKDKHSA--FDEAIRQADIALYQAKENGRNQV 385 Query: 306 STM 308 Sbjct: 386 RCF 388 >UniRef50_C6C0X5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0X5_DESAD Length = 779 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 7/180 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKS 187 V ++ A D LT + +R E+ + + + + L+++++DIDYFK+ Sbjct: 594 DVTERKEAEDKLRKLATTDSLTGLSNRRFFMESAEDALERTRRYGRDLSLLMMDIDYFKT 653 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH+ GD VL ++ KI+ + + R+GGEEF++ +P L+AE++R Sbjct: 654 VNDMYGHDAGDDVLKGLSKTGLKILRNIDVFGRIGGEEFSILLPDTGLDGATLVAERLRA 713 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +E + +L +TVSIGV + Y T +L+ AD LY +K+ GRN+ Sbjct: 714 EIETTKMNTRSGSLNITVSIGVAT----YSEHTKTLEQLLKAADIGLYAAKEAGRNQVKV 769 >UniRef50_B5JW02 Diguanylate cyclase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JW02_9GAMM Length = 595 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 120/313 (38%), Gaps = 16/313 (5%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPA--------IALIVSVIASVVIGGA 56 W + L +P + + + + A + + S + Sbjct: 274 WAASGLVVASLFLPYFYVIRVLIICTILACVMGLFAGFYRQVEGYGVARFYLYSWSLFML 333 Query: 57 GSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 G++ L + + L G V + ++ + Q + R+ Sbjct: 334 GAILVALNKFDVLPSNMITEYSMLFGTGVGTVVLSAALAVRLNDEKNKRYH-AQAEALRV 392 Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ--- 173 ++ + V +A+ +++ ++ D LT + +R L E L + + Sbjct: 393 QRESVELLEERVKERTSALREANEKLEKLSNTDSLTGLNNRRSLDELLAMEVKRTCRTGA 452 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPS 232 L+ M++DID FK+ ND +GH+ GD L A I +V R GGEEF V +P Sbjct: 453 PLSAMMMDIDRFKAFNDTHGHQVGDACLKAVAGVIASTAQRPSDVVGRYGGEEFCVLLPD 512 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 ++AE+IR VE FT + + +T+SIGV +D L+ AD Sbjct: 513 TPLDGAQIIAERIRAAVENLDFTVSGQRVPVTISIGVSELT---YCASDSGKALVEAADE 569 Query: 293 CLYRSKKDGRNRT 305 LY +K GRN Sbjct: 570 ALYSAKSAGRNCV 582 >UniRef50_C6BVV0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVV0_DESAD Length = 838 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 99/187 (52%), Gaps = 8/187 (4%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDI 182 I V++ V Q+ A D +T++ +R E +KS S++ ++ L++++ D+ Sbjct: 651 IGVNWDVTESREKENQLRRMATTDDMTKLNNRRYFIELVKSEIERSIRYSRPLSLVMFDV 710 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D FK++ND YGH+ GD VL A + ++ D ++ R+GGEEFAV +P + +L+A Sbjct: 711 DKFKAVNDTYGHDVGDMVLKAIAATAKGVLRDVDIIGRLGGEEFAVGLPETDLKGAMLLA 770 Query: 243 EKIRKGVELQPFTWQQKTL-YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 E++R +E + TVS+GV S D + L+ AD LY +K++G Sbjct: 771 ERLRVVLEEASVELPDGGIVDFTVSLGVAVLDRSIT----DVDVLLKHADLALYAAKENG 826 Query: 302 RNRTSTM 308 RNR Sbjct: 827 RNRVEAY 833 >UniRef50_Q15V65 Diguanylate cyclase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V65_PSEA6 Length = 370 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 80/318 (25%), Positives = 146/318 (45%), Gaps = 32/318 (10%) Query: 7 SEQFSTGVLIVPCM-LTLAIPGVLPRFKAEQ------MMPAIALIVSVIASVVIGGAGSL 59 ++ F GV ++ L +L F+++ + AL++ ++ +V GG + Sbjct: 58 NDDFYLGVTLLVASALFFTSRLILKFFQSKNGYKVSANLVTGALMLLMLYLIVTGGVKN- 116 Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEI--VLVANSVIDISVGSPFSIPQM---FSA 114 +W + P V G +++ VI G+ F + Q FS+ Sbjct: 117 ----TGPLWIYI-VPPVVLFFGGLKRGLIQLGCFAFVAIVILEYPGNLFLMAQYSDEFSS 171 Query: 115 RLGIATMAICPIMVSFSVAA------INSLMKQVALRADFDFLTQVYSRSGLYEALK--- 165 RL + + + + V + + + L ++ +A D L+ + +R G+ E L+ Sbjct: 172 RLIYSFITVSLLFVFYEYSRQRSFKTLQELSREFEKQARLDPLSGLQNRRGMLEKLEYEH 231 Query: 166 SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 +L+ ++LT+M+ DID+FK +ND +GH+ GD V++ + K + + VAR GGEE Sbjct: 232 QRTLRHHKNLTLMMCDIDHFKRVNDKFGHDVGDGVITQVGQLFDKALRKQDTVARWGGEE 291 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 F +P +AEK+R V Q + + +TVS+G+ D+ + Sbjct: 292 FLFLLPETTQEQAFTLAEKLRAQVSKQQYQAGSDSFTVTVSLGIYQMHPQ-----DNLDH 346 Query: 286 LMVEADTCLYRSKKDGRN 303 + ADT LYR+K +GRN Sbjct: 347 AISRADTNLYRAKSNGRN 364 >UniRef50_Q4KKJ4 Diguanylate cyclase, putative n=5 Tax=Pseudomonas fluorescens RepID=Q4KKJ4_PSEF5 Length = 727 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 8/176 (4%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDN 191 +++ +A D LT + +R+ E L+ + QH L + +LD+D+FK INDN Sbjct: 556 YREHLEEQRQKALIDPLTGLPNRAAWSERLEHEVGQWQQHGNSLLLAMLDLDHFKRINDN 615 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH GDKVL + A ++K + +AR GGEEF + +P+ G+ + E +R +E Sbjct: 616 YGHLAGDKVLKIIANVLRKRLRGSDFIARFGGEEFVLLLPNTPWPVGVRIVEALRAAIEA 675 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 PF ++ + + +TVS+G+ + +A D + ++ AD LYR+K GRNR Sbjct: 676 CPFHFKGEPVTITVSVGLSAFKA-----GDRSDLVIKRADQALYRAKDAGRNRVEA 726 >UniRef50_A9WIR5 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A9WIR5_CHLAA Length = 589 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 111/231 (48%), Gaps = 22/231 (9%) Query: 99 DISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLM----------------KQV 142 +++ GS + P + R+ A + ++++A +N+L Q+ Sbjct: 355 ELADGSLLAAPLIVGDRIIGALLVWSNHHDAYTMADLNALELLAATVAVALHNAFRFAQI 414 Query: 143 ALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDK 199 +A D LT + +R + L + + +++ ++D+D+FK IND +GH GD Sbjct: 415 QSQAITDNLTGLANRRHFLQVLHQEMERNRRYHTPVSIAMIDVDHFKQINDTFGHIAGDY 474 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 VL AR ++ + D ++AR GGEEF + +P L E++R + P + Sbjct: 475 VLREIARRCRQQLRDVDVLARYGGEEFGLILPETTYEQALKATERLRTVLATTPIMIDGR 534 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 + T+SIGV S + T+ D + L+ +AD LY +K+ GRNR ++ Sbjct: 535 QINPTISIGVASF---HPTVYPDPSSLIADADRALYLAKQQGRNRVCGVQE 582 >UniRef50_Q39ZK6 Response regulator receiver modulated diguanylate cyclase n=8 Tax=Geobacter RepID=Q39ZK6_GEOMG Length = 314 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 58/178 (32%), Positives = 99/178 (55%), Gaps = 6/178 (3%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSIND 190 + + + + D LT +++R L E + + ++ L++++LDIDYFK IND Sbjct: 130 ELKRSNEMLRTLSITDPLTHLHNRRHLMEMVDKEFQRSSRKGAPLSLVILDIDYFKKIND 189 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH+ GD+VL++ A +++ + L AR GGEEF + +P + L +AE++R V+ Sbjct: 190 TYGHQEGDRVLTILADIVRRRLRSYDLAARYGGEEFVLLLPETPVQEALSIAERLRLEVQ 249 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 F L +T+S+GV + +S + + + L +AD LYR+K+ GRNR M Sbjct: 250 EHVFEGSLGGLVITISLGVATYPSSRV---ESIDSLFRQADEALYRAKQGGRNRVELM 304 >UniRef50_D0SXM5 Predicted protein n=2 Tax=Acinetobacter lwoffii SH145 RepID=D0SXM5_ACILW Length = 440 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 15/293 (5%) Query: 25 IPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFV 84 I + A + +AL +S + I S F L A + T + + Sbjct: 129 ILPIGTTVAAAAWIGLLALSISPHVATYI--YASAIFILIANL---CVQTQFKVAVYCSI 183 Query: 85 TGAVEIVLVANSVIDISVGSPFS--IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQ- 141 A+ I+L + + S FS ++ + I I + SF + ++ Q Sbjct: 184 LIALFIMLGVSQFMSASQAFIFSVVFSPLWFFSIYINWNNILNVRRSFLRSLLDEWNYQT 243 Query: 142 VALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLT--VMLLDIDYFKSINDNYGHECGDK 199 + A D LTQ+Y+R + + + +H + +++ D+D+FK+IND+YGH+ GD+ Sbjct: 244 LKNLAHTDDLTQLYNRRHFVDMAERSIHQWPKHASSCLLMFDVDHFKNINDSYGHDVGDR 303 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-Q 258 VL + A +K + ++AR GGEEF + D L++AE+IR ++ Q + Sbjct: 304 VLQLIAEVTRKEMRHSDVLARFGGEEFIALLEDTQLQDSLVIAERIRCAIQKQYIYVEPN 363 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 T+ T+SIGV + T L+ +AD LY++KK GRNR Sbjct: 364 HTIRFTISIGVAELESH----TQPLEDLIKQADIALYQAKKSGRNRIEVYHPD 412 >UniRef50_Q489Q4 Sensory box/GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q489Q4_COLP3 Length = 451 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 18/211 (8%) Query: 100 ISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSG 159 IS PF P A +G +T V + L ++ L A+ D LT +Y+R Sbjct: 253 ISTKVPFDRPDKLPALIGFST----------DVTELFKLKEEFKLLANTDPLTNLYNRRF 302 Query: 160 LYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 216 E + + ++ +T++ +DID+FKSIND +GH GD+VL A+ ++ + Sbjct: 303 FIEQAEKEYQRAKRYSLSMTLISIDIDHFKSINDQFGHPAGDQVLIEIAKQLKASLRQTD 362 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRAS 275 ++AR+GGEEF++ +P + + + AE+I++ T Q + L+VSIGV S AS Sbjct: 363 ILARIGGEEFSILLPETSAMSAMTFAERIKEEQSRLIITGDWQGEINLSVSIGVSSLIAS 422 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 F+ L AD LY++K GRN Sbjct: 423 ----DKAFDVLFSRADKALYQAKNTGRNTVC 449 >UniRef50_Q21PN7 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21PN7_SACD2 Length = 565 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 10/234 (4%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 L + + + + + + + Q SA+L + V + Sbjct: 338 NSLPDLQSTVSDHIRTIQNALSTFKQAQPAPSQSLSAQLKALMDRVKT--VEEESEKSRA 395 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGH 194 +++ +A D LT + +R E + LT+ + D+D+FK IND +GH Sbjct: 396 QLEEQRYKATHDPLTSLPNREAYNERAFHELHRFKRYGHPLTLAVCDLDHFKKINDTFGH 455 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GDKVL + A+ + + + VAR GGEEF + +P + + +K+R + PF Sbjct: 456 QAGDKVLKLVAQVVSTRLRNVDFVARYGGEEFVLVMPETDAEQAKTVLDKMRAAIAKTPF 515 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 ++ + +T+S G+ R D AD LY +K +GRN+ Sbjct: 516 RFKDSPVTITMSFGIVQFRGE-----DSVESAFARADKALYEAKANGRNQCVIA 564 >UniRef50_Q2BQS0 GGDEF family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQS0_9GAMM Length = 314 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 7/188 (3%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVM 178 I ++ ++ L +++ A+ D +T Y+R E++ + ++ Sbjct: 129 IAAVIWLAINITEKKRLEQRLKDLAEKDPMTGAYNRRFFRESIDQHYATFKRYGTTYSLA 188 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +DIDYFK +ND +GH+ GD V+ HIQ+ + L++R GGEEF V P +N + Sbjct: 189 FIDIDYFKKVNDQFGHDVGDGVICHLVTHIQEQLRTTDLLSRFGGEEFVVLFPHINLDEA 248 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 L+AE++R +E+ P+ + TVSIG+ RA + ++ AD+ LY+SK Sbjct: 249 CLVAERLRATIEMTPYKSINHKVPFTVSIGISEVRAE----DESVEDILKRADSALYQSK 304 Query: 299 KDGRNRTS 306 GRN+ + Sbjct: 305 SSGRNKVT 312 >UniRef50_A8UV88 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UV88_9AQUI Length = 475 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 8/171 (4%) Query: 146 ADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R E ++ S + + L+++++DID FKSINDNYGH+ GD VL Sbjct: 307 AYTDPLTGLNNRRFFMENARTIIDLSKRYREPLSLLMMDIDNFKSINDNYGHDVGDLVLK 366 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A I+K V + AR GGEEF V +P + L++AE+IR K ++ Sbjct: 367 KLAEVIRKNVRTSDIPARFGGEEFVVLLPRTDEKGALMVAERIRNEFRNSSVKVDGKDIW 426 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 +VSIG+ L+ DD + L+ +AD LY++K+ G++R R ++ Sbjct: 427 TSVSIGLS-----VLSEEDDIDSLIKKADEALYQAKRSGKDRVVIYREEDQ 472 >UniRef50_A3Y6S3 PAS:GGDEF protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y6S3_9GAMM Length = 299 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 + + V ++ + D LT + +R E + + H +++ LDI Sbjct: 117 VSIQRDVTEYIYTQNKLEELSRTDPLTGLINRRVFDEMAEKEFYRYQNQNIHYSLLALDI 176 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK IND YGH GD VL+ F+ +K + + +AR+GGEEF + +P+ + V + +A Sbjct: 177 DYFKRINDKYGHLTGDYVLASFSTLCEKNIRSQDKIARIGGEEFCIILPATDKVGAIEVA 236 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 EK+R+ + F + + +TVSIGV + S D+ ++ AD LYR+K GR Sbjct: 237 EKLRRAISNARFKQDEHEIAVTVSIGVSQVKMSDY----DYVAMLKRADENLYRAKHQGR 292 Query: 303 NRT 305 N+ Sbjct: 293 NQV 295 >UniRef50_A1AK55 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=Desulfuromonadales RepID=A1AK55_PELPD Length = 301 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 8/177 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKS 187 V + + +++ D LT VY+R L LK + + ++M++DID+FK Sbjct: 126 DVTELATYEQKLIEMNTVDALTGVYNRRFLESRLKEECDRYGRYSRPFSLMMIDIDFFKK 185 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND +GH+ GD VL A ++ +AR GGEEF +P + +AE +R Sbjct: 186 VNDTHGHQGGDLVLKNVAAGAAAMIRKSDFLARYGGEEFCCLLPETDCDAAETVAEHLRA 245 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +E +Q+K + +T+S+G+ D L+ AD LY++K+ GRNR Sbjct: 246 HIENMEHLFQKKVIRVTISLGIACFAPD-----DSPETLVKRADEALYQAKRSGRNR 297 >UniRef50_A3WKY5 Signaling protein with a ligand-binding sensor domain and GGDEF domain n=2 Tax=Idiomarina RepID=A3WKY5_9GAMM Length = 999 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 15/203 (7%) Query: 116 LGIATMAICPIMVSFSVAAINSLM-------KQVALRADFDFLTQVYSRSGLYEALK--- 165 LG+A + + F L K++ A D LTQ+ +R E L+ Sbjct: 802 LGLAATILVRARIRFLNNQRAQLELMVAEKTKELKGLARQDSLTQLGNRRAFDEQLQYEF 861 Query: 166 SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 + Q L++ ++D+D+FKSIND + H GD+VL + + ++ D +AR GGEE Sbjct: 862 KRCERSEQPLSLAIIDVDHFKSINDRFLHVIGDQVLIELSALLSNMLRDIDYIARWGGEE 921 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 FA+ +P + L AE+IR+ +E + L +TVSIGV S + + Sbjct: 922 FALLMPETTAKEALQAAERIRQRIEDTSYQHLADELAVTVSIGVASS-----EHYPNHSA 976 Query: 286 LMVEADTCLYRSKKDGRNRTSTM 308 L+V AD LY++K+ GRNRT Sbjct: 977 LLVAADKALYKAKQSGRNRTELA 999 >UniRef50_Q2SNU2 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNU2_HAHCH Length = 367 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 24/308 (7%) Query: 13 GVLIVPCMLTL-AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAV 71 L + C L L + + +V ++ +I G G ++W V Sbjct: 55 SALFLFCALMLMNVISYNRTLNQQLFKTLFLWLVGLLFLYLIAGGGESN---TGILWFYV 111 Query: 72 RYTPQVTCLLTFVTGAVEIVLVANSVIDIS--VGSPFSIPQM-FSARLGIATMAICPIMV 128 + P V + TG+ ++++ + I P+ +L A + Sbjct: 112 -FPPFVFYVAGLRTGSWMLIIMVALIAIIFRFPELPWVRTVYNLDFQLRFAATVSFVSVF 170 Query: 129 SFSVAAINSLMKQ--------VALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTV 177 +F + +Q A D LTQ+ +R + + L+ + +H +V Sbjct: 171 AFVMDHSRRKARQELINMARLYEKAARTDELTQLPNRRDMQQQLEKEYFRYKRHGSHFSV 230 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 +LLDID+FK IND YGH+ GD VL + + + AR GGEEF + +P + V Sbjct: 231 ILLDIDHFKMINDTYGHDAGDFVLMKISELLVNACRKMDMAARWGGEEFLIQLPDTSLVQ 290 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 L +AE++RK +E P ++ + + T+S GV S ++ D L+ +AD LY++ Sbjct: 291 ALTLAERLRKSIEASPLQYKNQEIRYTISCGVCS-----ISQAKDLASLLKQADVNLYQA 345 Query: 298 KKDGRNRT 305 K GRN Sbjct: 346 KIKGRNMV 353 >UniRef50_Q30QX5 Diguanylate cyclase n=2 Tax=Proteobacteria RepID=Q30QX5_SULDN Length = 564 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 80/326 (24%), Positives = 140/326 (42%), Gaps = 31/326 (9%) Query: 9 QFSTGVLIVPCMLTLAIPGVLPR-------FKAEQMMPAIALIVSVIASVVIGGAG---- 57 +F+ G+++ P L L I + K + ++L + + A Sbjct: 239 KFNFGMMLSPIFLALFIQTIFKTKEQYINEHKLLNSIIFVSLANFIYGLIDFNSALEIMS 298 Query: 58 -SLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 SL + L +W ++R + L+ A + L+ SV + + S+ Sbjct: 299 SSLTYALIVFMWISIRICKKGDKLIKIFLIAHTLYLIF-SVYALLYYLGIADANYISSHG 357 Query: 117 GIATMAICPIMVSFSVA-----------AINSLMKQVALRADFDFLTQVYSRSGLYE--- 162 + I +++S+ V+ ++ L A D +T++Y+R E Sbjct: 358 TSIGLIIEAMLLSYLVSYKFIIMEQEKEEEKLKQIELKLLASTDSMTKLYNRRYFTEISA 417 Query: 163 ALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMG 222 + S ++ +L+++++DID FK +ND YGH+ GD+VL +R + + +V R G Sbjct: 418 KVLHLSKREKNNLSILMIDIDRFKVVNDTYGHQFGDEVLIALSRLLVEHQRKSDIVCRYG 477 Query: 223 GEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTD 281 GEEF + +P+ + D +A+KIR VE K T+SIGV + D Sbjct: 478 GEEFVILLPNTSLKDATNIAQKIRILVESLTMEAPTNKEFKFTISIGVAQID---VEHED 534 Query: 282 DFNKLMVEADTCLYRSKKDGRNRTST 307 D + AD LYR+K GRNR Sbjct: 535 DIKFALKRADDALYRAKNSGRNRVCA 560 >UniRef50_A1ASG6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASG6_PELPD Length = 505 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKS 187 + + +++ ++ D LT +Y+R LY+ L + + + LT+MLLDID+FK Sbjct: 318 DITERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKR 377 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND +GH+ GD VL+ A I I+ ++AR GGEEF +A P + ++AEKIR Sbjct: 378 INDTFGHDSGDLVLTQVAELISAILRSTDILARYGGEEFVIACPETDMDGAAVLAEKIRS 437 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 + + F +T+S+G+ L DD N L+ ADT LY +K+ GRNR Sbjct: 438 SIAMFSFPTVG---AVTISVGISL-----LESKDDINALIKRADTALYAAKEMGRNRV 487 >UniRef50_C0N773 GGDEF domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N773_9GAMM Length = 462 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 68/268 (25%), Positives = 126/268 (47%), Gaps = 14/268 (5%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 I+ + I G + + I + + VT + N+ + +S Sbjct: 202 ISHIKINGILDQRYAMSVGIRSDLPLLLSIYNKAIAVTTEETRQQILNNWLSLSFHQNVD 261 Query: 108 IPQMFSARLGIATMAICP----IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 + ++ + IA + ++V+ + + K++ + D LT +++R L +A Sbjct: 262 LTWLWRMLIVIAVVVALFFYRYLLVNQHNRELQRVNKKLEQLSQRDHLTGIHNRYYLDQA 321 Query: 164 LKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 + + ++ T+++LDID FK IND+YGH GD V+ A +++ V D+ +VAR Sbjct: 322 FQQELTRYKRYQHGFTIVMLDIDLFKQINDSYGHVVGDDVIKQIAMLLREHVRDQDVVAR 381 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF + P + +AE +R+ + PFT + +TVS GV RA Sbjct: 382 WGGEEFLILNPETSLDGARTLAEHLRRLIRRTPFTVD--KIDVTVSFGVTDYRA-----G 434 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTSTM 308 +D ++ AD+ LY++K+ GR++T Sbjct: 435 EDIETMIQRADSALYQAKQSGRDKTVVF 462 >UniRef50_Q085X7 Diguanylate cyclase n=2 Tax=Alteromonadales RepID=Q085X7_SHEFN Length = 357 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 139/317 (43%), Gaps = 34/317 (10%) Query: 11 STGVLIVPCM-------LTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPL 63 S VL + L + + + +L + + V GG Sbjct: 43 SNNVLTITLFVSSIIYCLAYIVLKKYNKLNLSSFIIIYSLYILMFYLVFTGGVEQ----- 97 Query: 64 PALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQM------FSARLG 117 +W + V L ++ + +L S+I I + SP +PQ F RL Sbjct: 98 TGPLWIFIVAPVSVYVL--GLSYGLVNLLFFLSIIAIIMFSPIEMPQYATYSTEFKVRLI 155 Query: 118 IATMAICPIMVSFSVAAINSLM------KQVALRADFDFLTQVYSRS---GLYEALKSPS 168 ++ + + + + + S K+ A D LT + +R + + KS Sbjct: 156 LSFLTTTFLSALYEYSRMLSYNSALKLGKKYQQLALSDPLTTLANRRNALTILQQEKSRI 215 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + + L+V+L D+D+FK +ND YGH CGD VL+ ++ ++ V + VAR GGEEF Sbjct: 216 SRNNEPLSVLLCDLDHFKMVNDKYGHNCGDMVLTELSQVFKQSVRQQDCVARWGGEEFLF 275 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 +P + ++AEKIR V + + + LT+SIG+ LT + ++L+ Sbjct: 276 ILPQTSAEQASVIAEKIRTNVHHHKVHFLKHEISLTISIGISQ-----LTDDQNIDELIN 330 Query: 289 EADTCLYRSKKDGRNRT 305 AD LY++KK+GRN+ Sbjct: 331 NADRNLYQAKKNGRNQV 347 >UniRef50_C4XPG9 GGDEF domain protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XPG9_DESMR Length = 368 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 6/190 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDI 182 + ++ ++A +L +++ A D LT + +R G +E + + + L++++LDI Sbjct: 176 VGMTQDISARKALEEELLRLAASDPLTGLANRRGFFEGAARMLGMARRCGTPLSMIMLDI 235 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK++ND YGH+ GD VL A +++ + L R+GGEEFAV P + G+ +A Sbjct: 236 DHFKAVNDAYGHDAGDAVLRAVAGRLRESLRVSDLAGRVGGEEFAVLCPGTDLAGGVELA 295 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R +E T + + +T S GV R + + AD LY +K+ GR Sbjct: 296 ERLRLALEDMVVTADCRAVKVTASFGVAQCRDDRDAAP---SACLTRADRALYAAKRGGR 352 Query: 303 NRTSTMRYGE 312 NR G Sbjct: 353 NRVCLESDGS 362 >UniRef50_Q0A9X2 Diguanylate cyclase n=3 Tax=Proteobacteria RepID=Q0A9X2_ALHEH Length = 295 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 8/187 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ----HLTVMLLDIDYFK 186 V A +L +++ A D LT VYSR + E + ++ + LT++++D+D+FK Sbjct: 109 EVQARETLAEELHRLAMMDDLTGVYSRRQVLEVGERELARRRRQGLTPLTLLMMDLDHFK 168 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 IND YGH GD VL F+ +++ + + V R+GGEEF +P V+ GL +AE+IR Sbjct: 169 RINDKYGHAAGDTVLVAFSEVLRRNLRESDAVGRLGGEEFLAVLPDVDLQGGLALAERIR 228 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + WQ++ + LTVSIGV A + + + ++ AD LY++K GRNR + Sbjct: 229 SEIAELRIPWQEEAIRLTVSIGVAGILAVH----ESLDDTIMRADDALYQAKVAGRNRVT 284 Query: 307 TMRYGEE 313 G + Sbjct: 285 VAGSGAQ 291 >UniRef50_A8TM57 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM57_9PROT Length = 461 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 7/190 (3%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVML 179 I V V + L +++ A D LT + +R + +++ + ++V++ Sbjct: 274 IGVTGVMVDVTESHRLRQELERLATTDPLTGLSNRRAFLMRAREEVERAVRHDRPMSVVM 333 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVDG 238 +D+D+FKS+ND YGH+ GD VL A +Q + + + AR GGEEF + +P Sbjct: 334 IDVDHFKSVNDRYGHDIGDLVLQDVAATVQGALRNSGDVAARFGGEEFVLLLPETTVSGA 393 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE+IR E +Q + T S GV R+ T + ++ AD LYR+K Sbjct: 394 QQLAERIRVAFERTAVETEQGAVRFTASFGVDVFRSDMDTG---IDTVLKRADDALYRAK 450 Query: 299 KDGRNRTSTM 308 + GRNR Sbjct: 451 EAGRNRVQLA 460 >UniRef50_D1TF13 Response regulator receiver protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TF13_9BURK Length = 531 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 11/243 (4%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPI---MVSFSVAA 134 V G IV +A +V D+ +P+ +A L IA A+ + +++F++ Sbjct: 278 IFTYAHVPGTPLIVAIAPAVDDVL--APWQRRSHVAAALTIAFGAVFVVVSWLLAFALRD 335 Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDN 191 + A D LT + +R L + L + + + L+V+ +DID+FK ND Sbjct: 336 KQRAQAALLRLASTDPLTGLSNRRVLDKRLDDEWMRARRDNRPLSVLFIDIDHFKRFNDT 395 Query: 192 YGHECGDKVLSVFARHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGHE GD+VL A I + LVAR GGEEFAV +P +AE+IR+ VE Sbjct: 396 YGHESGDEVLVAVADCIASVARRSVDLVARYGGEEFAVVLPDTTAQGAFAVAEQIRRKVE 455 Query: 251 LQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + + +TVS+G + R S + L+ AD LY +K +GRNRT + + Sbjct: 456 SRVIVRGHEAPQAVTVSVGCATARPSTADFANGLE-LLAAADAQLYVAKNEGRNRTRSAQ 514 Query: 310 YGE 312 + E Sbjct: 515 WDE 517 >UniRef50_Q30WV4 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30WV4_DESDG Length = 398 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 21/204 (10%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLL 180 + V V A ++++++ A D LT + +R EA ++ + + L++++L Sbjct: 183 THVGVVLDVTAHRRMLEELSHMARTDPLTGLNNRRFFMEAARAEVERMQSSGRPLSLLML 242 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK +ND +GH+ GD VL + + + + + + AR+GGEEFAV +P + Sbjct: 243 DIDHFKRVNDTWGHDAGDMVLKQLSCCLAETMRGQDVCARLGGEEFAVLLPETGHAEACR 302 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD----------------FN 284 AE +R+ V F +T S+G+ + ++ ++ Sbjct: 303 AAETLRQAVAGMAFA--GHGFSVTSSLGLTTLDSAGHAVSGQRPVPGGVAVSACCGQVVE 360 Query: 285 KLMVEADTCLYRSKKDGRNRTSTM 308 L+ AD LY +KK+GRNRT Sbjct: 361 ILLKRADIALYAAKKNGRNRTEVY 384 >UniRef50_A4BIU7 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Reinekea blandensis MED297 RepID=A4BIU7_9GAMM Length = 318 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 106/194 (54%), Gaps = 7/194 (3%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-- 174 +A + ++ S + + ++A + D LTQ+Y+R+ E L + +Q +H Sbjct: 127 NLAVIVYDVTDIATSKLELKAANDRLAQLSRTDGLTQLYNRAYWEEMLSNEFKRQKRHAH 186 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 L++++ DID+FK +ND YGH+ GD V+ A ++ + + R GGEEFA+ + Sbjct: 187 DLSLIMFDIDHFKKVNDTYGHQVGDDVIRAVAEEVRHNSRNTDIAGRYGGEEFALLLIDS 246 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 + + LL AE++RK +E + + + L +TVS+GV + S+ +N + AD Sbjct: 247 DAENALLFAERLRKAIENRRVSTPEGELQVTVSLGVAPWKESF----HHYNAWIEAADKA 302 Query: 294 LYRSKKDGRNRTST 307 LY SK +GRNR++ Sbjct: 303 LYTSKDEGRNRSTL 316 >UniRef50_Q0EXC8 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXC8_9PROT Length = 615 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 9/184 (4%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDY 184 + + L +++ +A D LT + +R +E + + +H ++++LD+D+ Sbjct: 431 IDRDITDRKELERELESQARTDVLTGLNNRRYFFELAELELARAKRHGNQFSLLMLDVDH 490 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK ND+YGH GD+VL + + + L R+GGEEFA+ +P + +AE+ Sbjct: 491 FKLFNDSYGHHIGDRVLQKLSEVCMHTLREIDLSGRIGGEEFAIMLPETRGDRAMEVAER 550 Query: 245 IRKGVELQPFTWQQKT--LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 +R + P +Q++ ++ TVSIGV S A+ + L+ AD LY +K GR Sbjct: 551 LRLAIAGAPVLLEQQSTFVHFTVSIGVTSLVAAGRQ----VDDLLKRADDALYAAKNAGR 606 Query: 303 NRTS 306 N+ Sbjct: 607 NQVC 610 >UniRef50_A7N081 Putative uncharacterized protein n=6 Tax=Vibrio RepID=A7N081_VIBHB Length = 354 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 8/192 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLL 180 I V + L K++ ++ D LT V +R L L+ +Q L+ +++ Sbjct: 150 WVIWSVRDVTKTHLLEKRLKELSETDELTGVLNRRAFLTRLDKAMSSHLRPSQTLSCIMI 209 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND GH GD+V+ A+ Q+ + + R+GGEEFAV + + + + Sbjct: 210 DIDHFKEINDQVGHFSGDQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYD 269 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE+IR+ ++ P + TVSIGV + T+ LMV AD +Y SK Sbjct: 270 VAERIREAIQNAPCKVDGIEISTTVSIGVAEYDEQVSSTTE----LMVNADKAMYYSKHS 325 Query: 301 GRNRTSTMRYGE 312 GRN+ T+ +G Sbjct: 326 GRNQV-TLHHGS 336 >UniRef50_A3DHG2 Diguanylate cyclase with GAF sensor n=3 Tax=Clostridium thermocellum RepID=A3DHG2_CLOTH Length = 415 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 9/194 (4%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDI 182 I V+ V + + Q+ A D LT++Y+R L + L + Q L+V+++DI Sbjct: 226 IEVAKPVISSKRTLHQLRKNATTDKLTKLYNRRFLEQYLDNQLEITGFSNQKLSVIMMDI 285 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D FK IND YGH GD VL FAR I + + LVAR GGEEF +PS + + +A Sbjct: 286 DNFKRINDTYGHNAGDAVLVTFARVILRCLRQTDLVARYGGEEFIAILPSSDTKNAYDIA 345 Query: 243 EKIRKGVELQPFT--WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 E+IR+ + +P + ++ S GV + Y T + N L+ AD LY++K+ Sbjct: 346 ERIRESIAAEPMPKINDVQLPNISCSFGVST----YPTHAKNKNDLIKAADIALYKAKQA 401 Query: 301 GRNRTSTMRYGEEV 314 G+NR T G E+ Sbjct: 402 GKNRVITYSEGMEM 415 >UniRef50_B8DIJ3 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DIJ3_DESVM Length = 1000 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 7/189 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLL 180 + ++ + L + + A D LT + +R + E +++ + L V++L Sbjct: 793 VVLSIARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLML 852 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D FK +ND +GH GD VL + Q+ + + ++ R+GGEEFA + + D L Sbjct: 853 DLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALA 912 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 AE++R+ VE + + L TVSIG+ + ++ AD+ LY +K+ Sbjct: 913 AAERLRRAVEEMDVPFSGQRLRCTVSIGLALRGPG----DGALDDILRRADSALYAAKEA 968 Query: 301 GRNRTSTMR 309 GRNR R Sbjct: 969 GRNRVMLAR 977 >UniRef50_C5T8F5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8F5_ACIDE Length = 1152 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 12/194 (6%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDI 182 + ++ V + + A D LT + +R L+ ++ + +++LD+ Sbjct: 961 LWIAKDVTERRRHEQTLERLATTDALTGLANRRAFMARLEEERMRPSMGGRGGMLIMLDL 1020 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQ-KIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 D+FK +ND +GH GD+VL AR ++ ++ L R+GGEEFAV +P + L + Sbjct: 1021 DHFKRVNDTWGHAAGDEVLVHLARLLRGDLLRATDLAGRLGGEEFAVLLPDTTAEEALGV 1080 Query: 242 AEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 AE++R+ +E TL +T+S+GV +T D ++ AD LY +K Sbjct: 1081 AERLRRALEQSKIHVGDGATLQVTMSLGVA-------PITGDALAVLAHADIALYEAKNT 1133 Query: 301 GRNRTSTMRYGEEV 314 GRN+ R E V Sbjct: 1134 GRNKVVLARSDEPV 1147 >UniRef50_A8UY29 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY29_9AQUI Length = 336 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 8/194 (4%) Query: 122 AICPIMVSFSVAAINSLMKQ-VALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTV 177 + + FS L K+ + +A D LT +Y+R L EA + + +++ Sbjct: 146 ILRSLAFIFSFIVKEELEKKRLLEKAIIDHLTGLYNRFYLEEAGAREIARAKRYGFPISL 205 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++ D+D FK +ND YGH+ GD+VL FA + V + R GGEEF V +P P + Sbjct: 206 IMFDLDNFKQVNDTYGHQVGDRVLVKFASIVSSNVRSTDMPVRYGGEEFVVLLPHTYPEE 265 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 + +AE+IR+ E F ++ + + LTVS G+ + +L + L+ AD +Y + Sbjct: 266 AVKVAERIREEFEKFLFRFEGEVMRLTVSAGISFCNSGECSLGE----LIQMADKAMYEA 321 Query: 298 KKDGRNRTSTMRYG 311 K+ G+NR Y Sbjct: 322 KEKGKNRIEVFSYQ 335 >UniRef50_Q5NP17 Diguanylate cyclase with beta propeller sensor n=3 Tax=Zymomonas mobilis RepID=Q5NP17_ZYMMO Length = 1008 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 8/185 (4%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 +M++ + ++ A+ D LT + +R E + + ++ +V +LDI Sbjct: 829 LMITNKTLELQETNLRLKELANTDELTGLLNRRAFTEMFEKNCAQFSKTKDQFSVFILDI 888 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK INDN GH GD V+ A+ I + + + AR GGEEF + +P+ + +A Sbjct: 889 DFFKKINDNEGHLAGDAVIQYIAQKITENIRQQDFAARYGGEEFVIMLPNADMETTCQVA 948 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 +I + +P +Q + + +TVSIGV + DD N L+ AD LY +K GR Sbjct: 949 SRIGNAISEKPVPYQGREIPVTVSIGVA-----VMKENDDANSLLERADERLYMAKNQGR 1003 Query: 303 NRTST 307 NR S+ Sbjct: 1004 NRVSS 1008 >UniRef50_C6NZP2 Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZP2_9PROT Length = 570 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 138/310 (44%), Gaps = 23/310 (7%) Query: 13 GVLIVPCMLTL------AIPGVLPRFKAEQMMPAIALIV-SVIASVVIGGAGSLAFPLPA 65 G++ L L + G+ ++ A+AL+V S + ++ + AF + Sbjct: 265 GLMFAARFLALKKHSPRTLRGIRWIGTLAVVIMALALMVDSQFVAAMVAFVCTTAFTIGM 324 Query: 66 LIWCAVRYTPQVTC----LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM 121 + + T L G + + + A +V P++ +A G+ Sbjct: 325 FLLGILSVLRNQTSGRYFLFATFFGMLGVGVTALAVWGKIPFRPYTFH---AAEFGLVIE 381 Query: 122 A-ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTV 177 A + + +S + + + A D LT + +R E S + + + +++ Sbjct: 382 ATLLALGLSNWMRENRDALYEAEQVARLDALTHLNNRRAFMELALPYASTAGRHERPMSL 441 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 +++DID+FKSIND YGH+ GD VL+ A ++ +VAR GGEEF + +P Sbjct: 442 VMMDIDHFKSINDQYGHQTGDLVLTAVADLLKNFSRTSDIVARWGGEEFILLLPETGLKQ 501 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 + AE++R+ + + ++ LT S G+ + A+ F+K++ +AD LY + Sbjct: 502 AINHAERLRQAIAEFRIPVGETSISLTASFGIAAHVANL-----SFDKMIEQADVQLYEA 556 Query: 298 KKDGRNRTST 307 K+ GRN+ Sbjct: 557 KRSGRNKVCC 566 >UniRef50_Q1MZ89 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=2 Tax=Gammaproteobacteria RepID=Q1MZ89_9GAMM Length = 577 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 8/177 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 + + Q L+A D LT + +R + + ++ L++++ D+D FKS Sbjct: 383 ELEEAKEQLNQSQLKAMTDSLTGLPNRGAYDVYAQQEYERYKRYGGELSLIVCDVDKFKS 442 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH+ GDKVL + +R ++K + L+AR GGEEF V +P D + +AEKI + Sbjct: 443 INDTYGHQAGDKVLQLISRQVKKGTRETDLLARYGGEEFVVLLPETKQEDAVSVAEKIIE 502 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 V PF ++ K + +T+S GV S + Y ++ AD LYR+K++GRN+ Sbjct: 503 AVATSPFHFRGKRVQITISCGVASFKKGYRP-----EQVFDAADAALYRAKENGRNQ 554 >UniRef50_Q1ZGY5 GGDEF domain protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGY5_9GAMM Length = 493 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 99/188 (52%), Gaps = 8/188 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKS 187 +KQ + A DFLT++ +R E L S + L + ++D+D+FK Sbjct: 307 ETQNYQKTLKQQSELAHLDFLTKIPNREAWSERLTFEFSRYQRYQNPLKIAIIDMDHFKR 366 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND +GH GDKV++V A+ ++K + + +AR GGEEFA+ +P + + + +K+ Sbjct: 367 INDQFGHLAGDKVINVVAQTLKKSLRNTDFIARYGGEEFAILLPEITNEQAVDVLQKLCA 426 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + PF +++ + +T+SIG S D+ + AD LY++K GRN+ Sbjct: 427 KIASIPFKFKKDNISITISIGCASF-----DKGDNIDSAFERADNALYKAKNGGRNQVVF 481 Query: 308 MRYGEEVV 315 +G+E++ Sbjct: 482 FAHGDELL 489 >UniRef50_A4BG19 GGDEF domain protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BG19_9GAMM Length = 377 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 82/304 (26%), Positives = 131/304 (43%), Gaps = 13/304 (4%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAG----SLAFPLPA 65 F+ L + + L I F + + L V + V GGA + LP Sbjct: 66 FTAFALFLFAHIQLRIKRNQSAFLFAARLVQLVLFVLCLYLVYAGGANQTGPLWVYLLPP 125 Query: 66 LIWCAVRYTPQVTCLLTFVTGAVEIVLV-ANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 ++ + FV G + IV N++ + F ++S A+ Sbjct: 126 VVMFLSGLKRGMMITALFVLGYLIIVFFPGNALGAVDYSYEFKTRLLYSFLTLTFLAAVY 185 Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLD 181 S +N L + +A D LT + +R G+ E ++ S + Q +T +L D Sbjct: 186 EQSRQSSYQKLNELKQDFERQASQDTLTHLLNRRGMRERIRYEVRRSQRNNQPITFILAD 245 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK IND+YGH+ GD VL ++ +Q V + +AR GGEEF +P N + + Sbjct: 246 LDHFKEINDHYGHDTGDTVLIQVSQLLQDSVRQQDSIARWGGEEFLFLLPETNARQAMQL 305 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AEKIR +E P Q L T+S G+ + ++ + EAD LY++K G Sbjct: 306 AEKIRSIIESHPLNSDQPPLTTTMSFGIAE-----MLDLENHQSTIAEADNRLYQAKSQG 360 Query: 302 RNRT 305 RN Sbjct: 361 RNCV 364 >UniRef50_A9FZW1 FHA domain protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FZW1_SORC5 Length = 299 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 7/174 (4%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYG 193 +++ D LTQ++++ LYEAL+ ++ +H L ++L DID+FK IND +G Sbjct: 130 QYHEEIYRMTIIDGLTQIHNKRYLYEALEREIIRGRRHERDLAILLFDIDHFKRINDVHG 189 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD VL AR +Q + + AR GGEEFA+ +P + + E +R+ V Sbjct: 190 HLAGDFVLKEVARIVQSRIRRDEVFARYGGEEFAIILPETSIEGAAALGETLRQKVAEHL 249 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 F +Q ++ +T+S+GV + T D L+ AD LY +K GRNR Sbjct: 250 FVFQADSIRVTISVGVALLQEGDRTAND----LIKRADERLYHAKNSGRNRVCA 299 >UniRef50_A4C957 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C957_9GAMM Length = 639 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 10/227 (4%) Query: 85 TGAVEIVLVANSVID-ISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVA 143 T +L +S+ID +++ QM +L + A I++S V + K++ Sbjct: 416 TELQNKLLQQSSLIDQLALEKAKQTEQM--QKLVNSLFAAILILLSVFVYRQVKVSKRLN 473 Query: 144 LRADFDFLTQVYSRSG---LYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 A+ D LTQ+ +R + + + + + L++++ DID+FK INDNYGH GD+V Sbjct: 474 RLANTDSLTQLANRRYTFHFAKIVFKEAQIEQKPLSIIIFDIDHFKRINDNYGHPFGDEV 533 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L A Q + + L+ R+GGEEF V + + + +AE++R+ + F Q+ Sbjct: 534 LMAVADKAQAGLREPDLLGRIGGEEFMVVLKNTPINQAVEIAERMRELIAQLSFAAAQQQ 593 Query: 261 LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + +T S GV DDF L AD LYR+K GRN+ Sbjct: 594 VKVTASFGVAQFN----VDVDDFGSLFQHADEALYRAKNAGRNQVVC 636 >UniRef50_Q2VYV6 FOG: GGDEF domain n=2 Tax=Magnetospirillum RepID=Q2VYV6_MAGSA Length = 578 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 7/185 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDI 182 I V + + ++ A D LT +++R E + + + + L ++LDI Sbjct: 397 IGVMLDITERKRMEAELRRLATTDVLTGIFNRRHFMEMARIEVDRARRHGRPLVALMLDI 456 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND +GH GD + A +I+ + ++ RMGGEEFA+ + + LL+A Sbjct: 457 DHFKRINDTHGHPVGDVAIKALADVCTQIIRHEDVLGRMGGEEFAIVLTETDLDGALLVA 516 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R+ V + T+ T SIGV L + ++ AD LY +K+ GR Sbjct: 517 ERLRQAVAAIRIPAELGTVAFTTSIGVAER----LEGDATIDTILSRADMALYSAKRSGR 572 Query: 303 NRTST 307 N+ + Sbjct: 573 NKVAV 577 >UniRef50_Q07MN8 Diguanylate cyclase n=10 Tax=Bradyrhizobiaceae RepID=Q07MN8_RHOP5 Length = 418 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 93/299 (31%), Positives = 137/299 (45%), Gaps = 47/299 (15%) Query: 13 GVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVR 72 G++ + +LT A G R ++ PAI I ++ GG L L L+ + Sbjct: 123 GIVAIYAVLTAAELGSERRKSMQRRWPAI------IVPLLHGGVLMLPILLSDLLTPPAQ 176 Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV 132 T L+ F AVE+VL A VG+ F+I + S R Sbjct: 177 TTAGNVWLMVF---AVELVLYA-------VGTVFAIFMLVSER----------------- 209 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDIDYFKSIN 189 ++ A D LT +++R G EA ++ + +TVM+ DIDYFKSIN Sbjct: 210 -----TVRAHKTAASIDPLTGLFNRRGFTEATTRMIEREAAAGRPVTVMIFDIDYFKSIN 264 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D +GH GD++L +FA I + L R+GGEEFA +P + + L+ AE++R Sbjct: 265 DRFGHPAGDELLKLFATLITSSLRITDLSGRIGGEEFAALLP-CSIDEALVAAERVRWSF 323 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 E + TVSIGV G A + + L+ ADT LY++K+ GRNR T Sbjct: 324 ETCGIVVDNDPVATTVSIGVAGGPA-----RTELDVLLAAADTALYQAKRGGRNRVETA 377 >UniRef50_A3Y5H4 Diguanylate cyclase (GGDEF domain) n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5H4_9GAMM Length = 419 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 98/203 (48%), Gaps = 6/203 (2%) Query: 111 MFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK 170 + + + I T + I ++ A D LT +Y+R L + Sbjct: 197 LLLSSIAIITAFVIGIGYKKVQQIREEYELELIEMATKDKLTNIYNRRSFEARLLQDLKQ 256 Query: 171 QTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 + L+++L D+D+FK +ND YGH+ GD VL++ A Q+ V +VAR GGEEF Sbjct: 257 YDKFQTELSIILFDVDHFKFVNDTYGHQAGDSVLTLLAEIAQQTVRSNDIVARYGGEEFI 316 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + +P+ ++AEK+R +E F Q + +T+S+GV + + L+ Sbjct: 317 ILLPNTGKNGSQVIAEKLRSAIENAAFDTQSYKIQITISLGVACISDVQHP---NLDNLI 373 Query: 288 VEADTCLYRSKKDGRNRTSTMRY 310 AD LY +K +GRN+ S M+ Sbjct: 374 KSADDALYYAKHNGRNQVSYMQT 396 >UniRef50_Q31IP8 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IP8_THICR Length = 540 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 6/186 (3%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKSI 188 + + SL+ Q+ A D+LT + +R +E + + + Q ++++++DID+FK I Sbjct: 358 MEQLGSLLNQLRDEATKDYLTGLLNRKAFFEQAEQIWLSAKEHHQPISLLMIDIDHFKRI 417 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND++GH+ GD+VL A + ++ LV R GGEEF + + + + L A +++K Sbjct: 418 NDSFGHDAGDRVLIEVANVFSQNCREEDLVCRYGGEEFIILLENKDEQPTLEFASRLKKV 477 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 ++ + Q + + ++S+GV +G A L + + AD LY++K +GRNR Sbjct: 478 IQEMSVSEQGEVIRFSISVGVATGSALEL---NSIETFISHADQALYQAKANGRNRVEVF 534 Query: 309 RYGEEV 314 E+ Sbjct: 535 HAEEKT 540 >UniRef50_Q1JXK3 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXK3_DESAC Length = 475 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 11/221 (4%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAIC---PIMVSFSVAAINSLMKQVALRAD 147 ++ A S+ + + + + + G+ AI I+ S + +Q+ +A Sbjct: 254 MIAAVSINEDNFFADWRRHSLLMGGFGLVVGAILFTLSILTVRSQQEQFRIQQQLQQQAT 313 Query: 148 FDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT + +R E + + L+V+++DID+FK +ND YGH GD+VL Sbjct: 314 TDPLTGIANRRYALEQAALEIKRNQRTGTPLSVVMMDIDHFKKVNDTYGHHVGDQVLMEV 373 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ + + LV+R GGEEF + +PS N AEKIR+ +E F + + +T Sbjct: 374 AQTCRSHCRESDLVSRFGGEEFLILLPSTNLNGAQTHAEKIRQAIEDLSFPTAEGNVSVT 433 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 S GV + ++++ AD LY++K DGRN Sbjct: 434 ASFGVSQWQGETK-----IDRVVSRADAALYQAKHDGRNCV 469 >UniRef50_Q47C76 PAS:GGDEF n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C76_DECAR Length = 548 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 11/211 (5%) Query: 103 GSPFSIPQMFSARLGIATMA-ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY 161 G F + F R + IC I S + I K++ + FD LT +++R + Sbjct: 338 GEAFFLSVKFPTRNSSNEITGICGI--STDITPIKHYQKELERLSQFDELTNLFNRRHFF 395 Query: 162 EALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV 218 K + +++ L+VM+LDID+FK IND +GH+ GD VL+ + I + D + Sbjct: 396 SLAKHELNRSSRYRSKLSVMMLDIDHFKRINDGHGHKTGDLVLANIGKQIGDSLRDSDIA 455 Query: 219 ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYL 277 RMGGEEFA+ +P + +MAE++RK V +TL T+SIG+ + + Sbjct: 456 GRMGGEEFAILLPETDLEQASIMAERLRKQVAETWLDIGDGRTLNCTLSIGLATKSDQQI 515 Query: 278 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 D L+ +ADT LY +K GRN+ S Sbjct: 516 ----DLENLLHQADTALYAAKNSGRNKVSCA 542 >UniRef50_B5JSY0 Response regulator PleD n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSY0_9GAMM Length = 261 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 11/236 (4%) Query: 74 TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVA 133 T L+T V + ++ A L I P++ + + Sbjct: 11 NVATTLLMTAVVSGSTVCCALGLILLGFPIGGKVWNFAVPAALIIPFFVGTPLVHNLIKS 70 Query: 134 AIN--SLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTVMLLDIDYFKSI 188 I + KQ+ A+ D LT +Y+R ++ + + H ++++LD+D+FKSI Sbjct: 71 NIKLLRVQKQLEELANKDALTGLYNRQYFFDHANEWDKRCRENSGHFSLLMLDVDHFKSI 130 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND +GH GD+VL + I+ + + + AR GGEEF +P N +AE+IR G Sbjct: 131 NDRFGHPVGDRVLQRVSNVIKGFMRQEDMCARYGGEEFICLLPDTNAAGAKAVAERIRLG 190 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +E Q F + + L L+VSIG A+ ++ D+ L+ AD LY +K GRNR Sbjct: 191 MEHQAF-LKARGLSLSVSIG-----ATTMSANDNLETLIERADQALYEAKDGGRNR 240 >UniRef50_A0KXZ1 Diguanylate cyclase n=4 Tax=Shewanella RepID=A0KXZ1_SHESA Length = 329 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%) Query: 123 ICPIMVSFSVAAINSLMKQV-------ALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL 175 + I ++ + + + + AD D LTQ+Y+R + + + + Q L Sbjct: 132 LVRIEIATDITERKQMEQALIEAKSTAERLADTDELTQLYNRRAFFNLGRQIAQQTAQPL 191 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 ++ DID+FK IND +GH GD L AR Q + ++AR+GGEEF + +P+ + Sbjct: 192 AFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGEEFGLILPNTHH 251 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD----FNKLMVEAD 291 +AE IR G + QP +++ T S G+ S + D+ L AD Sbjct: 252 EQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQTLLETLFNNAD 311 Query: 292 TCLYRSKKDGRNRTS 306 + ++K+ GRN+ Sbjct: 312 QAMMQAKRAGRNQVC 326 >UniRef50_B9ZM04 Diguanylate cyclase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZM04_9GAMM Length = 291 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 16/274 (5%) Query: 49 ASVVIGGAGSL-AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 ++V+G AG + A A + + + T L L I ++ G S Sbjct: 8 GAIVLGAAGLIYAQWNLARLLRELPESRVRTGWLLMFVLIPIFTLGYLGFIPLNWGLYHS 67 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMK--QVALRADFDFLTQVYSRSGLYEALK 165 IP + + + + +V + +++ S+ + ++ + D LT +++R + L Sbjct: 68 IPDLLVPIIFLLGGSFVCSVVLLTYSSVESIRRITRLEHESITDPLTGLFNRRHMDRRLD 127 Query: 166 SP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMG 222 S + Q L+V++LDID FK IND GH GD +L A+ +++ + L AR G Sbjct: 128 EEVARSRRYGQPLSVVMLDIDEFKGINDRLGHLAGDYILESIAQRLRQNLRRVDLAARFG 187 Query: 223 GEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK---------TLYLTVSIGVGSGR 273 GEEF V P + L +AEK+R + P + LY+TVS+GV S Sbjct: 188 GEEFVVIAPHTDQDAALQLAEKLRSEIAQTPIILKGHEHVPPCAPDELYVTVSVGVASLN 247 Query: 274 ASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 D+ + L+ AD LYR+K GRNR + Sbjct: 248 -IEPDSRDNADFLLQRADDALYRAKAGGRNRCES 280 >UniRef50_B7K273 Response regulator receiver modulated diguanylate cyclase n=6 Tax=Cyanobacteria RepID=B7K273_CYAP8 Length = 308 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 14/231 (6%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 LT ++ V PF +P++ + + + + Sbjct: 85 ILFLTASNDKEHLIKAFEQGAVDYVTKPFKVPELLAR-------VKTHVELKQVQKQLQE 137 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGH 194 + + AD D LT + +R L E + SL+ ++++D+D+FK+IND YGH Sbjct: 138 ACQTMKKLADTDELTGIANRRCLLEFAQREFQRSLRYGTPFCLLMIDVDHFKNINDKYGH 197 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GDK + I+ + + R GGEEF V +P L +AE+IR+ + QP Sbjct: 198 PNGDKAIQWVVEIIKLGLREVDFFGRFGGEEFIVVLPQTALGGALEVAERIREAIASQPL 257 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 T +Q T+ LT SIGV + T+ ++ AD LY++K GRN+ Sbjct: 258 TLEQDTVTLTASIGVATYTGEDKTVVG----MIQRADKSLYQAKAKGRNQV 304 >UniRef50_Q486E7 Sensory box/GGDEF domain protein n=2 Tax=Proteobacteria RepID=Q486E7_COLP3 Length = 428 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 112/208 (53%), Gaps = 9/208 (4%) Query: 103 GSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE 162 GS F+I S + ++ ++ N L++++ L + D LT++Y+R E Sbjct: 225 GSEFAIEVTISKIRIADNVEFTAVI--RDISEKNQLLEELILSSRRDPLTELYNRRYFTE 282 Query: 163 ALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 L S S + + ++++LDID+FKSIND YGH CGD L F++ + + + + Sbjct: 283 LLHSEITRSRRFKRGFSLLMLDIDHFKSINDRYGHACGDAALIAFSKAVTNSIREVDTIC 342 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R GGEEF V +P + V +++AEKIRK +E ++ + +TVSIG+ + + Sbjct: 343 RWGGEEFLVLLPEIPKVTAMVVAEKIRKNIENLETIYEGDLIKVTVSIGLEYFSGDAIEM 402 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRTST 307 + ++ + D LYR+K GRN+ ST Sbjct: 403 S----SMINKVDQILYRAKDTGRNKIST 426 >UniRef50_A8UUF5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUF5_9AQUI Length = 283 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 12/177 (6%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDN 191 I+ L++++ AD D LT Y+R + E L + + L+V+ +D+D FK +ND Sbjct: 116 ISDLIRELRFLADTDSLTGFYNRRKIEEILAKEIERSRRYGNPLSVLFIDVDNFKELNDT 175 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GD+VL A I+ + V R GGEEF V +P + L +AE+IRK VE Sbjct: 176 YGHKSGDEVLRKIAEIIKSELRRTDYVGRFGGEEFMVILPETDSQSALRVAERIRKRVER 235 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + F +TVS+GV L DD N L D +Y +K+ G+NR+ + Sbjct: 236 EDFKTG----KVTVSVGVTE-----LKEGDDLNTLFNRVDRAMYLAKERGKNRSELL 283 >UniRef50_B3PIC1 Sensory box/GGDEF family protein n=5 Tax=Gammaproteobacteria RepID=B3PIC1_CELJU Length = 322 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 12/193 (6%) Query: 123 ICPIMVSFSVAAINSL-----MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---H 174 IC I+ + A+N + KQ+ + D LT +++R L + + Sbjct: 131 ICVIIYDVTDTAVNKIAQQHANKQLQNLSRTDHLTSLFNRGYWELRLIQEFKRYDRYESP 190 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 ++++LDID+FK INDNYGH GD+ + +R I++ V D + R GGEEF + + S N Sbjct: 191 SSLIMLDIDHFKKINDNYGHTVGDEAIRCVSRVIKEQVRDLDIAGRYGGEEFGIILTSTN 250 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 ++AE++R +E Q + ++ T+S+GV D + + +AD L Sbjct: 251 GDGACVIAERLRSIIEKQTVYAEGHEIHFTISLGVAELN----DHMHDHRQWIEKADHAL 306 Query: 295 YRSKKDGRNRTST 307 Y+SK+ GRNR + Sbjct: 307 YKSKESGRNRCTL 319 >UniRef50_C6BZS4 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZS4_DESAD Length = 635 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 8/185 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDID 183 + + + ++++V A D+LT ++R ++ + T++ L +M+LDID Sbjct: 451 ITAHDITEQKEMLEEVKRLASTDYLTGAHNRRHFMSRAETELDRLTRYGGELYLMMLDID 510 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK+IND YGH GD VL + + + + R+GGEEFA + + + +AE Sbjct: 511 HFKNINDTYGHSVGDVVLKEMVKCCIETLRTSDVFGRLGGEEFAALLVHGSIDSAIQVAE 570 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 ++R+ +E + + LTVSIG+ A +D + AD CLY++K+ GRN Sbjct: 571 RLREAIEDMEVRIGRHVVKLTVSIGLTMVCAD-----EDIEIALKHADKCLYQAKEQGRN 625 Query: 304 RTSTM 308 R + Sbjct: 626 RVVSY 630 >UniRef50_C8WZ84 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZ84_DESRD Length = 550 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 7/179 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKS 187 + + + + D LT +++R + + + + LT+ +LDID+FK Sbjct: 363 DITHQQQYQEHLKRLSRTDELTGLFNRRHFITLMHKEFSRARRTHERLTLAMLDIDHFKD 422 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH+ GD VL R +++ V + AR GGEEFA+ P + + E++R Sbjct: 423 VNDKYGHDVGDHVLQHLGRILREDVRPYDIAARYGGEEFAICFPDTDLSQADHICERLRT 482 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + T+ TVS G+ R + +D + L+ AD LY +K +GRNR Sbjct: 483 LCAASEVSRNGGTIGFTVSFGLSELRPEH----EDLDGLLKSADNALYAAKANGRNRIE 537 >UniRef50_UPI0000384142 COG2199: FOG: GGDEF domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000384142 Length = 445 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 7/185 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 + + V L +++ A D LT + +R E + ++ + L V++LD+ Sbjct: 263 VALKEDVTETKRLQEELTRLASQDSLTGIANRRHFLERAHTEIIRAGRAKTPLAVLMLDV 322 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND YGH GD L A + + + L R+GGEEF + P + A Sbjct: 323 DHFKKINDEYGHAAGDAALKALADTCRSTLRETDLFGRLGGEEFGILFPGDDLNAATEAA 382 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R + T T+ +T S+G+ + + + AD LY +K+ GR Sbjct: 383 ERLRLAIAATKITIGGATIAITASLGLSLLQDG----EKSIDAALSRADQALYVAKQAGR 438 Query: 303 NRTST 307 NR Sbjct: 439 NRLEI 443 >UniRef50_C9QDN5 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QDN5_VIBOR Length = 457 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 6/197 (3%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLT 176 GI+ + I+V+ AA N+ +++ L A D LT++ +R +E + + + L Sbjct: 264 GISAFIVQRIIVN-DCAARNAYEQKLYLEATTDPLTKLSNRRHFFEIGEQLVQNEMEPLA 322 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 V+++DID+FK INDNYGH+ GD LS FA + + ++ R+GGEEFA+ + +V+ Sbjct: 323 VVIIDIDHFKKINDNYGHQVGDLALSRFAEMCCREIRASDIIGRIGGEEFAIILLNVDLA 382 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 + E+IRK V F + +L +T+S+GV ++ L+ AD LY+ Sbjct: 383 IVNEVTERIRKRVAESNFNSEVSSLSMTISLGVALSDQAH-----TLEHLIKRADGALYQ 437 Query: 297 SKKDGRNRTSTMRYGEE 313 +K GRNR +E Sbjct: 438 AKVSGRNRVVISEQVKE 454 >UniRef50_Q3ADQ4 Response regulator/sensory box protein/GGDEF domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADQ4_CARHZ Length = 668 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 13/228 (5%) Query: 81 LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK 140 L +T + + A ++ GS + ++ + + + + L + Sbjct: 442 LCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKSGEKLIETFI--DLTERKKLEE 499 Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECG 197 Q+ + D+LTQ Y+R E L+ + + +++LDID+FK++ND +GH G Sbjct: 500 QLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKNVNDRFGHAAG 559 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL A I+ + +AR GGEEF + +P+ +AE++R+ + + Sbjct: 560 DLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKAAGLAEELREQLSMLEIPGV 619 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +T S GV D + L++ AD LY +K GRN Sbjct: 620 G---RVTASFGVTGYCP-----GDTLDTLLMRADQMLYTAKASGRNCV 659 >UniRef50_A1VA66 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=Desulfovibrio vulgaris RepID=A1VA66_DESVV Length = 827 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 7/203 (3%) Query: 107 SIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EA 163 + AR + + + +L + A D LT V +R + Sbjct: 609 PVNVEVHARRIEFEGRFVVLSSARDITERKNLEAALLREATTDPLTGVRNRRQFFVDANR 668 Query: 164 LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 + +L+ L V++LDID+FK++ND YGH+ GD+VL FA + + + R+GG Sbjct: 669 EFARALRHDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFAACCVEALRAYDVFGRLGG 728 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF 283 EEFA +P+ +P + + AE++RK VE + ++ L TVS+GV S A+ L F Sbjct: 729 EEFAALLPAASPEEAMETAERLRKRVERRSVVYEGTALQCTVSVGVTSLAAADLG----F 784 Query: 284 NKLMVEADTCLYRSKKDGRNRTS 306 + ++ AD LY +K GRNR+ Sbjct: 785 DDMLRRADRALYAAKDHGRNRSE 807 >UniRef50_C1XLF8 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XLF8_MEIRU Length = 373 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 131/315 (41%), Gaps = 23/315 (7%) Query: 15 LIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASV-VIGGAGSLAFPL-------PAL 66 L++P + + + + +++IA ++ A+ L PA Sbjct: 58 LLLPMAVGFIALEFHLWRNPQNVRWVWQIALALIAIYEIVSLFYEAAYKLHQRDGITPAA 117 Query: 67 IWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVG---SPFSIPQMFSARLGIATMAI 123 +W + Y L +V + ++ +VG SP + L I Sbjct: 118 LWFPMVYLMAFNLLNRRQALRFSLVYLVLGLLAGAVGMLMSPSINVSSINTALQFTFSNI 177 Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLL 180 + + + A + Q+ A D LT + +R + + L+ + + + ++L Sbjct: 178 AYLALLYMFAYLRRHYAQMHQMAHTDALTNLTNRRAMQQKLEGELDRARRYNRPFALLLA 237 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D+FK IND YGH GD+VL A + + + + +AR GGEEF + P + L Sbjct: 238 DLDHFKQINDTYGHSVGDQVLREVAGRLAQHLRESDSLARWGGEEFLILAPETDLQQAYL 297 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +A+++ + P + + +T+S+GV R D L+ AD +YR+K Sbjct: 298 LAQRLLGAIRESPISG----VQVTLSLGVACYRQ-----GDSIAALLSRADEAMYRAKAG 348 Query: 301 GRNRTSTMRYGEEVV 315 GRN+ E++V Sbjct: 349 GRNQIVLEEELEDIV 363 >UniRef50_Q6ALC0 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALC0_DESPS Length = 652 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 8/180 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVMLLDIDYFK 186 + +++ A D LT + +RS L+E ++ +Q L++++LDIDYFK Sbjct: 475 DITTKRQSREKLQRLATTDSLTGLCNRSQLFEIAEAELERQRHSSEHNLSLVMLDIDYFK 534 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 IND +GH GD VL FA +K + D + AR+GGEEF + +P + L +AE+ R Sbjct: 535 KINDAHGHAAGDLVLKAFADIGRKYLRDVDVFARIGGEEFIILLPGTDIKVALKIAERFR 594 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 VE P +K + TVS GV + + F +++ EAD+ LY +K+ GRNR Sbjct: 595 ALVEKNPVMVNEKEIAFTVSFGVTAWNG----IEQTFEEVLHEADSALYVAKEKGRNRVE 650 >UniRef50_A6Q2P1 Putative uncharacterized protein n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2P1_NITSB Length = 486 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 16/195 (8%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQ 173 I + + I+ F+++ I + A D LT +++R E + S + + Sbjct: 304 SILILFLFTILFYFAISRI-----KFEEMATVDKLTGLFNRHKFQEIAEIEIKRSHRHKR 358 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 L+V+L DID+FK IND YGH+ GD VL A+ I++ + R GGEEF + P Sbjct: 359 PLSVILFDIDHFKKINDTYGHDIGDVVLRELAKIIKQNIRKYDYAIRWGGEEFLILTPET 418 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 + MAEK+RK VE F K +T+S+GV S + + ++ + +AD Sbjct: 419 DEKQAFAMAEKLRKAVESHTFPEVGK---VTISLGVASVDPN-----ESIDQAIKKADNA 470 Query: 294 LYRSKKDGRNRTSTM 308 LY SK GRN+T+ Sbjct: 471 LYGSKLGGRNKTTVA 485 >UniRef50_Q21HV6 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Alteromonadales RepID=Q21HV6_SACD2 Length = 301 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 104/230 (45%), Gaps = 13/230 (5%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 +++ TG I+ + V P P + A + + + + Sbjct: 78 VIMVSATTGDQSIIRALDLGAHDFVSKPIEYPVL-------AARMRSALRLIQAKRDLEK 130 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGH 194 K++ A D LT + +R ++ ++ +++ + + +++LD D+FK IND YGH Sbjct: 131 ANKELERLATRDPLTGINNRRSFFKLAEAELTKTIRHGRDIALLMLDADHFKMINDTYGH 190 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD+ L Q + ++AR+GGEEFA+ P N +AE+IR+ E Sbjct: 191 AAGDEALLTITEICQNACRESDILARLGGEEFAICCPDTNLEGAYAVAERIRQQCENTVI 250 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 + +T+SIG+ + S +++ AD LY++K+ GRNR Sbjct: 251 EHNSASFGITLSIGITTFVPSQ---DKSITEMLQRADNLLYQAKEMGRNR 297 >UniRef50_A0L4D8 Diguanylate cyclase n=2 Tax=cellular organisms RepID=A0L4D8_MAGSM Length = 464 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 4/177 (2%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSI 188 + + +K+ + D LTQV +R L+++L + + + L+++++D+D+FK I Sbjct: 274 LQQVQDDLKKAKEESLTDPLTQVANRRALFQSLTRETARTRRYGEPLSLIIIDLDHFKKI 333 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND YGH GD+VL A H + ++ D +AR GGEEF +P + AE+IR Sbjct: 334 NDTYGHPVGDRVLKEVAGHARALLRDSDTLARYGGEEFVALLPETTLPQAMEKAEQIRLS 393 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 V F + ++L ++ S+GV ++ + AD LYR+K GRN Sbjct: 394 VAAMRFKLKGESLSISASLGVAQLDDGASQDANN-EAFVHRADQALYRAKSGGRNCV 449 >UniRef50_A8UT68 Putative uncharacterized protein n=2 Tax=Aquificaceae RepID=A8UT68_9AQUI Length = 620 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 10/189 (5%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFKSI 188 V SLM+ + ++ D LT +Y+R L E L + ++ L ++++DIDYFK I Sbjct: 434 VLESKSLMELLQQQSYIDQLTGLYNRRFLDEIADKLSAQVKRRGTSLGILMIDIDYFKQI 493 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND YGH+ GD+VL A I+ V + V R GGEE V + V +AEKIR+ Sbjct: 494 NDKYGHDVGDRVLKEIASIIKSSVREADYVIRFGGEEILVLLVDVREGTAKKVAEKIRRA 553 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS-- 306 +E + + TVSIGV F + + AD LYR+K++GRNR Sbjct: 554 IENKVIEISGGVIKKTVSIGVSEFPK---DCDGKFWQCIKFADVALYRAKEEGRNRVVRF 610 Query: 307 --TMRYGEE 313 M GEE Sbjct: 611 TPEMWSGEE 619 >UniRef50_A6VWF8 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VWF8_MARMS Length = 368 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 140/314 (44%), Gaps = 33/314 (10%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 F +L++ L + + +AL + V GG S +W Sbjct: 63 FLVSILLLITFYILKTSSYRHYHNCSRFIAIVALYILCFYLVCAGGVNS-----SGPLWI 117 Query: 70 AVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQM--------FSARLGIATM 121 V P +T F+ I+ A + +S+ F QM F RL + Sbjct: 118 YV--IPSIT--FAFLGLKQGIIANAAFIFIVSIMLFFPNDQMLLTTYSYEFKTRLIYVFL 173 Query: 122 AICPIMVSFSVAAINSLMK------QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL 175 I + + VA S M+ + +A FD+LT + +R G+ + L +Q +H Sbjct: 174 TIVTLSGLYEVARYRSFMRLKTMKDKYEYQAQFDYLTFLPNRRGIQKILNKD-QRQRKHT 232 Query: 176 ----TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 T+ +LDID FK IND +GHE GD VL +R ++ + + +AR GGEEF + +P Sbjct: 233 HKVSTIAILDIDKFKVINDEFGHEVGDMVLKHTSRVLRDCIRSQDSLARWGGEEFLLLLP 292 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + L++ E IR+ VE PF ++++T+S+G+ DFN+ + +D Sbjct: 293 ETTEQEALVLLESIRECVEETPFGHGNISIFITLSVGLCETSPDV-----DFNETIKFSD 347 Query: 292 TCLYRSKKDGRNRT 305 LYR+K+ GRN Sbjct: 348 VSLYRAKQAGRNTV 361 >UniRef50_C5SA57 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA57_CHRVI Length = 434 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 6/199 (3%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHL 175 A + + + + L + + D LTQ+++R + E L+ + Sbjct: 234 AGQVVGAMEIIRDITDSKRLEEDLRQLTRLDPLTQLFNRRYFFTLAEQEYQRFLRYHHPM 293 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 + ++DID+FKS+ND YGH GD VL + A+ + + ++AR GGEEF + +P + Sbjct: 294 ALCMIDIDHFKSVNDRYGHLVGDTVLCIVAQTLHDNLRQVDILARYGGEEFVILLPETDL 353 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 E++R V + + +T+S+GV + +L+ AD LY Sbjct: 354 QTACASTERLRVAVAERRIETPSGPVSVTLSLGVVAIADG---PAMTLERLLDAADQMLY 410 Query: 296 RSKKDGRNRTSTMRYGEEV 314 R+K+ GRNR G + Sbjct: 411 RAKQAGRNRVEIWDLGRSM 429 >UniRef50_UPI0001AEC0DE GGDEF domain protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC0DE Length = 329 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 7/177 (3%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDN 191 + L +++ + D LT +Y+R E +++ + T ++LDID+FK IND Sbjct: 151 MEHLNEELKTASRVDGLTGLYNRRYWQERFDEMHKLCVRREKPSTALMLDIDHFKRINDT 210 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GDKV+ + A I++ V + L R GGEEFA+ + + D ++AE+IR+ + Sbjct: 211 YGHQAGDKVIKMLAALIKRCVRETDLAGRYGGEEFAIILNDSSVEDAKIVAERIRQLAQR 270 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + +++ TVS+G+ + + AD LY +K++GRN+ Sbjct: 271 LVVEHEGESISFTVSLGLAQFSPDFKGAM----AWLECADQALYEAKENGRNQYRIY 323 >UniRef50_A3J836 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Marinobacter sp. ELB17 RepID=A3J836_9ALTE Length = 588 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 142/314 (45%), Gaps = 22/314 (7%) Query: 11 STGVLIVPCMLTLAIPGVLPRFKAEQM-MPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 S+G+ L+ + + + AL V A G A LAF + L Sbjct: 269 SSGLAFATNFLSTKRRQPRLHRTFQTIGVAYFALFVVCFALGEQGLALRLAFLVAPLFSV 328 Query: 70 AVRY----------TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIA 119 + Y +L + V + A++V + P++ ++ +G+ Sbjct: 329 LMLYMGASSWVAGNQFARYFMLGTLASVVGASITASTVTGMI---PYTQLGYYAVDIGMI 385 Query: 120 TMAICPIMVSFSVAAINSLMKQVALR-ADFDFLTQVYSRSGLY---EALKSPSLKQTQHL 175 AI ++ + N + A + A D LT + +R G E+L S ++ +++ Sbjct: 386 VDAILLMLALADLVRKNEEARTAAEQNAQTDLLTGLSNRRGFLPVAESLWSLVTRKNRNV 445 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 V ++DID FK+IND YGH GDKVL V A + + L+AR GGEEF + +P + Sbjct: 446 CVAMIDIDRFKNINDQYGHAVGDKVLKVIADELYRSRRRGDLLARWGGEEFTLLLPETSE 505 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 + L +AE+ R +E + + + T+SIGV S + ++T ++ + AD LY Sbjct: 506 AEALKVAERFRHNIEQLVTNDRGRVIQCTISIGVTSRHSEHVT----LDQAIARADEELY 561 Query: 296 RSKKDGRNRTSTMR 309 R+K GRN+ S R Sbjct: 562 RAKLQGRNQVSFGR 575 >UniRef50_Q30SY9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SY9_SULDN Length = 611 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 11/170 (6%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECG 197 ++ A D LT Y+R + E +K + +++L++++ DID+FK +ND YGH+ G Sbjct: 449 ELERLASIDKLTGAYNRRMIDEFMKKEIFLHVRDSKNLSLIMADIDHFKLVNDTYGHQAG 508 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VLS R I + + R GGEEF V P+ + L++A+KIR+ +E F Sbjct: 509 DAVLSDVGRIISSTIRKSDIFGRYGGEEFIVICPNTSSQQALILAQKIREEIENFHFAEV 568 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 T+S+GV + A+ D+ ++ AD LY +KK+GRNR Sbjct: 569 GHK---TISLGVATLIAN-----DEVENIIKRADDALYIAKKEGRNRVVL 610 >UniRef50_C5T1B3 Diguanylate cyclase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1B3_ACIDE Length = 445 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 19/249 (7%) Query: 71 VRYTPQVTCLLT---FVTGAVEIVLVANSVIDISVG---SPFSIPQMFSARLGIATMAIC 124 VRY V L + + LVA ++ + + S + A L + MA Sbjct: 197 VRYLFAVVSGLHGVFLLVRPLLFRLVAPGTVEDADAGMVALLSQFVVLEATLSLVLMAFG 256 Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLD 181 +M++ + +++ A+ D LT V++R E S + + L V+++D Sbjct: 257 ALMLT-----NEHITRELRHLAEVDPLTNVFNRRAFLTLLEKAISNAQRTQSGLPVLVID 311 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK IND +GH+ GD+VL F + + ++ R+GGEEFA+ +P+ + + Sbjct: 312 LDHFKKINDTWGHQSGDEVLRHFVALANGCLRKEDVMGRLGGEEFAIFLPNASSEGSQAV 371 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++R V P + + LTVSIGV + + ++ AD +YR+K+ G Sbjct: 372 AERLRALVAHHPAMTGRGPIALTVSIGVTQYGG-----GETSDFVLQRADEAMYRAKERG 426 Query: 302 RNRTSTMRY 310 RNR T+ Sbjct: 427 RNRVETLSP 435 >UniRef50_Q74AN9 Response regulator n=1 Tax=Geobacter sulfurreducens RepID=Q74AN9_GEOSL Length = 301 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 16/234 (6%) Query: 75 PQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAA 134 LLT G +++ ++ D VG PFS+ ++ AR+ + + + Sbjct: 75 LPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGEL-RARIQVGRRTV------ELHSR 127 Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDN 191 + + + +A D LT V +R + + L+ + + L++ +LDID+FK +ND Sbjct: 128 LQETQEALNHQATHDPLTGVMNRRAIIDHLEKELSRVKRDGGSLSIGILDIDHFKRVNDR 187 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GD+VL + ++ D L+ R+GGEEF V P D + E++R + Sbjct: 188 YGHQTGDEVLCGCVGVLGGLLRDYDLLGRLGGEEFLVVAPGTG-DDCNHLYERLRAAIAS 246 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 FT + K + +TVSIGV + + ++L+ AD LYR+K+ GR+R Sbjct: 247 TKFTSRAKPVSVTVSIGVAACDGTA-----GLDELLAAADDALYRAKRSGRDRV 295 >UniRef50_Q2RLY1 Diguanylate cyclase (GGDEF domain) n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLY1_MOOTA Length = 357 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 57/176 (32%), Positives = 95/176 (53%), Gaps = 6/176 (3%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKS--PSLKQTQHLTVMLLDIDYFKSINDNYGH 194 + + + A D LT +Y+ +A + S +Q ++L V++LDIDYFK IND YGH Sbjct: 177 KRLAAMEMAAITDDLTGIYNYRYFVQAFSNLLNSRQQPRYLAVLMLDIDYFKEINDAYGH 236 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 G++VL+ A +++ ++ +V R GGEEFA+ +P + L +AE+IRK + F Sbjct: 237 LTGNRVLAELATILKECTREQDVVTRFGGEEFALILPDTDYHGALQVAERIRKAIAEHTF 296 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 + +++TVS GV + D ++ AD LY++K GRN ++ Sbjct: 297 QAEGTAIHVTVSAGVAV----WPVDGTDKKDIIARADRALYQAKTTGRNSVCAYQF 348 >UniRef50_A0L7F5 Cyclic nucleotide-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7F5_MAGSM Length = 320 Score = 229 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 9/181 (4%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSI 188 + + +++ A D LT +Y+R E+++ + L++++LD+D+FK Sbjct: 142 IIEGSERQRKLETFAKVDPLTGIYNRRWFDESMQRQMRRVEHSQNPLSLIMLDVDHFKRY 201 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND +GH+ GD+ L A I + + AR GGEEFAV +P + V G ++AE++R Sbjct: 202 NDTHGHQGGDEALIALAHTISLHLRPGDIAARYGGEEFAVVLPDTDAVSGRMIAERLRTA 261 Query: 249 VELQPFTWQQKT--LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 VE + +T+S+GV + D ++L+ AD LY++K GRNR Sbjct: 262 VEALEIKDDEGNSLSGITISLGVAQTSGTV----DSVSELIATADAALYQAKNQGRNRVV 317 Query: 307 T 307 Sbjct: 318 V 318 >UniRef50_A1SVZ1 Diguanylate cyclase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SVZ1_PSYIN Length = 477 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 104 SPFSIPQMFSARLGIATMAICPIMVSFSV-AAINSLMKQVALRADFDFLTQVYSRSGLYE 162 S F + + + + I+++F + +N K++ A +D LT + +R E Sbjct: 274 SEFLLNVQKTFYFNLLCSLLGTILIAFLILKTVNKYYKEMEHLAKYDALTNLKNRRAFNE 333 Query: 163 ALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 L+ ++ HL++ D+D FKS+ND +GH+ GDKVL A ++ + ++ Sbjct: 334 ELEHSLLLCKRRASHLSLTFFDLDDFKSVNDTFGHQTGDKVLQYVADILKDDIRQTDIIG 393 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R GGEEF VA D + EKIR +E F Q K + +T S G+ + +T Sbjct: 394 RWGGEEFIVAFIDTELEDAKFITEKIRAHIEKDSFLSQLKNMKVTASFGLTT-----ITT 448 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRT 305 D + L+ AD LY++K++G+N+ Sbjct: 449 QDTLDSLLERADQALYKAKENGKNQV 474 >UniRef50_Q2BQN9 Diguanylate cyclase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQN9_9GAMM Length = 529 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 + + M++ LRA D LT + +R+ E + + +++ +V++ D+D+FK Sbjct: 354 ETRKVKAHMEEERLRARTDPLTGLPNRAAYDEQIAQEYERWSRYRTSFSVVVADLDFFKK 413 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH GDKVL + A+ I K + VAR GGEEF + +PS + +K+R+ Sbjct: 414 INDTYGHLAGDKVLRLVAKVITKNIRVTDFVARYGGEEFVILLPSTVAEEAAQAMDKLRE 473 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + PF + K + +T+S GV + D + + AD LY++K+DGRN + Sbjct: 474 SLASSPFNFHGKPVGITMSFGVTE-----IKEGDSLDDVFTRADEALYQAKEDGRNLVRS 528 >UniRef50_C5BK03 Ggdef domain protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BK03_TERTT Length = 580 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSIN 189 + L+++ RA D LT + +R E + + ++ L + + DID+FK IN Sbjct: 401 SKTKELLEEERYRATHDSLTGLPNREAYNERVYQEYRRFTRYSRPLGIAVCDIDHFKKIN 460 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 DN+GH+ GD+VL + AR I + VAR GGEEF + +P + + +KIR V Sbjct: 461 DNFGHQTGDRVLKLIARLISTRLRKVDFVARYGGEEFVILLPETSASQSRSVLDKIRAAV 520 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 F + + +T+S G+ + R+ D AD LY++K DGRNR Sbjct: 521 AKAAFRFGDDPVKITLSFGISAFRSD-----DTIETAFQRADKALYQAKADGRNRCVV 573 >UniRef50_A5V1I0 Diguanylate cyclase with GAF sensor n=2 Tax=Roseiflexus RepID=A5V1I0_ROSS1 Length = 681 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 6/177 (3%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYG 193 L + A D LT V++R +E ++ + + L ++++D+D+FKS+ND YG Sbjct: 500 HLFAEARRHATIDELTGVWNRRTFFENVRREFQRSQRTLHPLAILMIDVDHFKSVNDTYG 559 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL A + + ++ R GGEEFAVA+P + +AE++R VE P Sbjct: 560 HAAGDQVLRGVAERCRNQLRVIDIIGRYGGEEFAVALPETDIHAAGQIAERLRIAVERAP 619 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 F ++ LT+S+G + ++ AD LY +K+ GRN Y Sbjct: 620 FVTDYGSISLTISVGAAVYHPDDHV---TLDAVIDRADRALYIAKRSGRNSVRVWSY 673 >UniRef50_A1VD57 Diguanylate cyclase n=3 Tax=Desulfovibrio vulgaris RepID=A1VD57_DESVV Length = 487 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 7/193 (3%) Query: 122 AICPIMVSFSVAAINSL-MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTV 177 A+ +M ++A N++ +++ L+AD D LTQ+++R L + + +T+ Sbjct: 288 ALDSVMRHLTLALRNAVVYREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTL 347 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++LDID+FK++ND YGH GD VL A+ ++ AR GGEEF V +P + Sbjct: 348 LMLDIDHFKAVNDTYGHPAGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKC 407 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 G + AE++RK + KT+ +TVSIG+ + A+ +L+ EAD LY + Sbjct: 408 GRIFAERLRKRLASSRVEVDGKTIAVTVSIGLATLSAAAPL---SPERLVCEADGALYAA 464 Query: 298 KKDGRNRTSTMRY 310 K GRN + Sbjct: 465 KAAGRNIVCEAQE 477 >UniRef50_C7R6Y0 Diguanylate cyclase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6Y0_KANKD Length = 469 Score = 229 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 66/260 (25%), Positives = 123/260 (47%), Gaps = 15/260 (5%) Query: 64 PALIWCAVRYTPQVT-------CLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 A+IW A+ L + A +L++ V+ + + S ++S Sbjct: 212 IAMIWFALSCLSFSIGTVWDHQWWLAHIIFASGFLLLSFGVVQAFLTT-GSFKTIYSQTE 270 Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-- 174 + ++ + ++ +++ A D LT+V +R + + + +++ Sbjct: 271 LFQQIIREKKKSERALIELKAVNQKLEELAATDSLTRVANRREFMKRSEEEMSRSSRNST 330 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 L +M++D D+FK IND YGH+ GDKVL F + ++++ L+ R+GGEEFA+ +P Sbjct: 331 DLCLMVIDFDHFKEINDQYGHQAGDKVLKDFVKLAKEVMRPSDLLGRIGGEEFALLLPET 390 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 N + +AE++R+ +E + K + LT+SIGV + D K + AD Sbjct: 391 NIRSAVKVAERLRQHIEEESIVIGSKRIKLTISIGVAEYQP----KVDTVKKWLHRADEF 446 Query: 294 LYRSKKDGRNRTSTMRYGEE 313 LY++K GRNR + + Sbjct: 447 LYQAKDKGRNRVVVEAFDAD 466 >UniRef50_C8X007 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X007_DESRD Length = 531 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 7/186 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDI 182 +++ V+ ++ A D LT +Y+R +E + + + + +T++LLDI Sbjct: 337 LVLMRDVSERKEAESRLLQMAATDELTGLYNRRRFFELARGEFNRAKRYSSPMTILLLDI 396 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK IND YGH+ GD L I + ++AR+GGEEF +P + D +A Sbjct: 397 DYFKRINDEYGHDAGDTALRCIVSMIASQLRSLDVLARLGGEEFVALLPETHQFDAERIA 456 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E+IR +E + TL++TVSIGV Y D +L+ AD +YR+K+DGR Sbjct: 457 ERIRSEIESTAINLFETTLFVTVSIGVA----GYSKEMQDVGELINRADEAMYRAKRDGR 512 Query: 303 NRTSTM 308 N+ Sbjct: 513 NQVCLA 518 >UniRef50_A0LAY9 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAY9_MAGSM Length = 220 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 9/195 (4%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHL 175 I ++ ++ + ++ ++Q+ + A D LT + +R G E + S + + L Sbjct: 25 IMRTIISLVGAWLIYSLRKALQQLEVMATHDKLTGILNRHGFQERGKYIIDQSQRHSWPL 84 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 V+++DID+FK IND++GH+ GD VL ++K V +VAR+GGEEFA+ +P+ + Sbjct: 85 AVVMMDIDHFKKINDSFGHDIGDLVLQSLGSELKKSVRSTDIVARLGGEEFALILPNTDS 144 Query: 236 VDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 +A+ IRK +E + K L T+S+GV SG D + L+ +AD L Sbjct: 145 KHAHQIADSIRKKIETSRLSLPDGKFLTYTLSLGVTSGLG-----IDKMDLLLNQADNAL 199 Query: 295 YRSKKDGRNRTSTMR 309 YR+K GRNR + Sbjct: 200 YRAKGTGRNRVVSFH 214 >UniRef50_Q3A5K1 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5K1_PELCD Length = 323 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 16/239 (6%) Query: 80 LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLM 139 +L F +G + +A I +S P +P M R+ I + + A++ Sbjct: 82 VLLFSSGDERDLWMAGMEIGVSECLPMGLP-MEEHRIKIR----WHLKNRERIHALHQAQ 136 Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHEC 196 Q+A A D LT +Y+R+ + + ++ L+++++D+D+FK IND YGH Sbjct: 137 SQLARIALTDSLTGLYNRAYFDATITQEVARCSRRGLPLSLLMVDLDHFKKINDTYGHLA 196 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD+ L+ A +++ V R GGEEFAV +P + +AE+IRK + + Sbjct: 197 GDQALAAVALVLKEQSRISDTVCRFGGEEFAVILPETTNANAATVAERIRKKISQLDLAF 256 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 315 +T SIGVGS + + L D L+ EAD LY +K GRNR + G VV Sbjct: 257 -----PVTASIGVGSAKVTNQLLPD---HLIAEADGALYEAKSQGRNRVQSSVLGAGVV 307 >UniRef50_B6ER50 Putative GGDEF protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ER50_ALISL Length = 413 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 74/282 (26%), Positives = 124/282 (43%), Gaps = 15/282 (5%) Query: 28 VLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGA 87 V FK + PA I+ + + S F +P Y + L + + Sbjct: 140 VHRHFKPLMVNPAFVRIIGAKSVAEVMAMESFKFIIP-------EYNQEHASNLHYQLIS 192 Query: 88 VEIVLVANSVIDISVGSPFSIPQMFSARLGI-ATMAICPIMVSFSVAAINSLMKQVALRA 146 +I + V +I + Q+F + + +A+ ++ V L +++ +A Sbjct: 193 GDIENTNSVVENIRLDGESRFFQLFESVIDWDGELAVQSSII--DVTEKYHLERKIEFQA 250 Query: 147 DFDFLTQVYSRSGLYEALKSPSLKQTQHL-TVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT + +R + E L + + T +L+DID FK IND +GH GD V+ FA Sbjct: 251 KHDDLTGLLNRRAITEFLLKEQEEHLRPSQTCLLIDIDNFKLINDQFGHSAGDSVIQQFA 310 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 V D G++ R GGEEF + P +N +AEKIR E F + +TV Sbjct: 311 ELCSTFVKDNGVIGRWGGEEFIIFFPQLNVEQANNIAEKIRYACEEVHFIFNDIQHSITV 370 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 SIG+ + L+ + L+ AD +Y++K+ G+N+ Sbjct: 371 SIGISTC----LSTSCSIEALVQNADNNMYQAKQQGKNQIVL 408 >UniRef50_Q2BLA2 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BLA2_9GAMM Length = 811 Score = 229 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 105/191 (54%), Gaps = 6/191 (3%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDID 183 VS + + A D LT + +R L++ + + + L++ +LD+D Sbjct: 623 FVSLLIEE-QQTEANLHRLATTDELTSLANRRKFLTTLEAELARAKRYHRELSLCMLDLD 681 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK IND+ GH GD VL A+ ++ ++ + + R+GGEEFA+ +P + D L++AE Sbjct: 682 HFKRINDDNGHSAGDSVLVEVAKIMEAMLRESDMAGRIGGEEFAILLPDTSEDDALILAE 741 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 ++R+ +E +Q TL LT SIGV S + + ++L+ AD C+Y +K++GRN Sbjct: 742 RLREAIESLEIKYQAHTLKLTTSIGVASL--NQMPEIVQASELLSAADDCMYYAKQNGRN 799 Query: 304 RTSTMRYGEEV 314 S +R +++ Sbjct: 800 LVSNVRTTQQL 810 >UniRef50_C0QBK1 GGDEF domain family protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBK1_DESAH Length = 430 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 58/180 (32%), Positives = 99/180 (55%), Gaps = 11/180 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 ++ ++ + + + +A D LT +++R + L S + ++ L+++L DID+FK Sbjct: 257 NLQSLEGINELLEKQASTDALTGIFNRMKFNQTLTSEIKRAKRYRVALSLILFDIDHFKQ 316 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND+YGH GD VL AR + + + + AR GGEEF + P + + +AEK+R Sbjct: 317 VNDSYGHLSGDTVLKHLARLVASNLREIDIFARWGGEEFVIQAPETSLESAIKLAEKLRS 376 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +E F +K +TVS GV + R+S D+ L+ AD LYR+K+ GRN+ + Sbjct: 377 KIENYVFPAPKK---ITVSFGVATFRSS-----DNDITLVNRADEALYRAKEGGRNQVVS 428 >UniRef50_B6BK11 Ggdef/pas/pac-domain containing protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BK11_9PROT Length = 464 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 110 QMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL 169 + F + + I I + A +L +Q+ +A D+LT++++R L+ Sbjct: 266 EFFGSPIKITEDTTNIIWNILDITAKKNLQEQLETQATTDYLTELHNRRYFTSRLEEEVA 325 Query: 170 KQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 + + ++++ D+D FK IND GH GD VL +FA ++K + + R+GGEE Sbjct: 326 RIKRDKKVTSSLLMFDLDKFKLINDTLGHLMGDVVLKIFADILKKNLRKSDIAGRIGGEE 385 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 FA+ +PS N + ++A +IR+ V + ++ TVSIG+ + + + + Sbjct: 386 FAMILPSTNIREAKVLANRIREEVSNKKTIIDGNSINFTVSIGLTAIASDDA----NSDS 441 Query: 286 LMVEADTCLYRSKKDGRNRTST 307 ADT LY +K GRNR Sbjct: 442 AFARADTALYMAKGKGRNRVEV 463 >UniRef50_B5ZG65 Diguanylate cyclase with PAS/PAC sensor n=4 Tax=Proteobacteria RepID=B5ZG65_GLUDA Length = 464 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 8/182 (4%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS--PSLKQT--QHLTVMLLDIDYFK 186 V A + +++ A D LT + +R E ++ L+ + V+++DID FK Sbjct: 280 DVTARRRMEQELHALARVDHLTGLPNRRAFTEGMEQAWQMLRGGVSRGGAVLMIDIDRFK 339 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +IND YGH GD VL A + + RMGGEEFA +P + +AE++R Sbjct: 340 TINDRYGHAAGDAVLRHVATVLMATLRATDFTGRMGGEEFAACLPDTGLDEAGRIAERLR 399 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + + P ++ ++ LTVSIG+ R + D + AD LY +K++GR+R + Sbjct: 400 QAIAGTPVPFESHSIALTVSIGISKMRLADAGGDD----ALSRADMALYSAKENGRDRVA 455 Query: 307 TM 308 Sbjct: 456 FA 457 >UniRef50_Q6AJ00 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AJ00_DESPS Length = 571 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 56/185 (30%), Positives = 97/185 (52%), Gaps = 10/185 (5%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY----EALKSPSLKQTQHLTVMLLD 181 + + +++ A D LT++ +R + E L + L Q L+V++LD Sbjct: 390 LWMMDDATKRKKAEEKLVRIAATDSLTKLNNRRHFFSLGHEEL-ALHLHNAQPLSVLMLD 448 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK++ND GH+ GDKVL +F++ + ++ R+GGEEFAV + + Sbjct: 449 IDHFKNVNDTLGHQAGDKVLKIFSKICAVNLRSVDIIGRIGGEEFAVILTNTPRSQAQRT 508 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE+IR +E P +Q +TVSIG+ + + ++ + ++ AD LY++K +G Sbjct: 509 AERIRLAIETSPEFTKQSLPKITVSIGIATNQP-----PENLDAIICRADKNLYQAKSNG 563 Query: 302 RNRTS 306 RNR Sbjct: 564 RNRIE 568 >UniRef50_Q88RK0 GGDEF domain protein n=3 Tax=Pseudomonas putida RepID=Q88RK0_PSEPK Length = 645 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 60/175 (34%), Positives = 99/175 (56%), Gaps = 8/175 (4%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDN 191 +++ +A D LT + +R+ E ++ L + HL + +LD+D+FK INDN Sbjct: 474 YREHLEEQRQKALLDPLTGLPNRAAWSERVEREMLDWQENGGHLAMAILDLDHFKRINDN 533 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH GDKVL + A ++K + + +AR GGEEF + +P P +AE +R VE Sbjct: 534 YGHLAGDKVLKIVADQLRKRLRGRDFIARFGGEEFVMLLPQTTPAVAAQVAEVLRATVEA 593 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 PF ++ + + +T SIG+G+ R+ + ++++ AD LYR+K+ GRNR Sbjct: 594 CPFHFKGERVVITTSIGLGAFRSGERS-----DQVLKRADAALYRAKELGRNRVE 643 >UniRef50_Q087A8 Diguanylate cyclase n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q087A8_SHEFN Length = 321 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 66/242 (27%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT---MAICPIMVS 129 Y P + V + + DI V +P S+ + + I I +S Sbjct: 87 YFPANVVDILHVNDTKVLNSQSKLSDDIIVDTPASLIVYHEVKQPLYNHKGTLIGLIGIS 146 Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFK 186 + A L ++ A+ D LT +++R + + T+ ++M++DID FK Sbjct: 147 TDITAAYHLRSKLERLANTDPLTGLFNRRSFTSFCEHEFFRATRYFQPFSLMIIDIDLFK 206 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +ND YGH GD+V+ A + V + ++AR+GGEEFA+ +P + ++AE++R Sbjct: 207 KVNDTYGHLVGDEVIKRVANICNEHVREADVLARIGGEEFAILLPDTDIDSAYVLAERLR 266 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + + +QKT +T+SIGV + R+ F ++ AD LY SK GRN + Sbjct: 267 EAQQQYE---EQKTPSITISIGVATLRSQ----DKAFLEIFKRADKALYSSKNVGRNSVN 319 Query: 307 TM 308 Sbjct: 320 VA 321 >UniRef50_C9YC42 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YC42_9BURK Length = 409 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 25/316 (7%) Query: 12 TGVLIVPCMLTLAIPGVLPRFKAEQ--MMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 TG+ + A + R ++ +P +A+ V ++ +++I P + Sbjct: 96 TGMGAAFALCAWACRPLEHRHRSWSGRWLPVLAMAVCIVFAMLITAIDQWVTPAITPFFI 155 Query: 70 AVRYTPQVTCLLTFVTGAV--EIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIM 127 A T L V A+ ++ +++I ++ +P + L + + C + Sbjct: 156 ACIVTSLTIYLRPHVAAALFGVAFVLFSTLIGMTQHNPEMLLSNRINGLAVCVIGFCLSV 215 Query: 128 VSF---------------SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT 172 + + + + +++ D LT +++R+ E + + Sbjct: 216 LMWRKFTTIAVQKHQLEKAHTELQLKQRELERLTRQDGLTGLFNRNTFVELSTNELKRAK 275 Query: 173 QHLT---VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 + + ++LLD+D+FK IND +GH GD VL A+ + V LV R+GGEEF V Sbjct: 276 RQGSATTILLLDLDHFKRINDTWGHPAGDVVLRHVAQTMVNSVRSTDLVGRLGGEEFIVL 335 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 +P +AEKIR+ +E+ W+ K + +T SIG+ A + +F+ L E Sbjct: 336 LPHTTAEASRKIAEKIRQRLEVSDIRWEGKRIAVTASIGLSGTTAEE---SREFDSLYTE 392 Query: 290 ADTCLYRSKKDGRNRT 305 AD LY +K+ GRNR Sbjct: 393 ADKALYLAKQRGRNRV 408 >UniRef50_B4UA43 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4UA43_HYDS0 Length = 610 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 11/187 (5%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLD 181 + + L + + ++ D LT +Y+R L + L+ + + + L+V++ D Sbjct: 432 AVFTFVDITKEKELSELLLKQSIEDTLTGIYNRRYLKDKLERHVNLAKRYERPLSVIMFD 491 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK IND +GH+ GDKVL ++ + + + + + AR GGEEF + P D ++ Sbjct: 492 IDFFKHINDTFGHDVGDKVLIAISKVVSENIRNTDIFARYGGEEFIIVAPETTKEDAKIL 551 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AEK+R + F ++ + +T S GV S L D L+ D LY +K+ G Sbjct: 552 AEKLRSLIRNLHF---EEGINVTCSFGVVS-----LEKPDTKETLLKRVDNALYEAKRTG 603 Query: 302 RNRTSTM 308 RNR + Sbjct: 604 RNRVVVL 610 >UniRef50_Q7MRL2 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MRL2_WOLSU Length = 480 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 26/293 (8%) Query: 21 LTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCL 80 L LA+ G + K E + L I V++ L L + Y + Sbjct: 201 LDLALSGRIAVDKRESNRKGLEL--GEIIEVLVS-------KLSTLAQAGIHYQDE---- 247 Query: 81 LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIM--VSFSVAAINSL 138 +T + +E +++ ++ + G I Q + + + F + I L Sbjct: 248 ITHIGKTLEEMILDPRSLEKTKGRLIEITQKIDTHIQNLNKEVAEKKSEIEFLQSKIEEL 307 Query: 139 MKQV---ALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTVMLLDIDYFKSINDNY 192 +++ A D LT V++R L E+L ++ L+ +V DID+FK IND Y Sbjct: 308 TQELCRAQEEASIDSLTGVHTRRFLEESLSRFEALFLRYESRYSVAFFDIDFFKKINDKY 367 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GHE GD+VL+ F R +++ V + + AR GGEEF V +P +N V+ AE+IR VE Sbjct: 368 GHEAGDRVLATFGRLLKQSVRQEDIAARYGGEEFIVILPEMNLVEAWRFAERIRALVERS 427 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 F +Q + ++VS G+ + +D L+ AD LY +K+ GRN+ Sbjct: 428 VFVYQDMRIKVSVSGGIAE-----RSECEDRKALIKFADARLYEAKEGGRNQI 475 >UniRef50_Q2W1M0 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=3 Tax=Magnetospirillum RepID=Q2W1M0_MAGSA Length = 477 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 9/194 (4%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-- 174 G A + I + + + Q+ A D LT +R + A + + +++ Sbjct: 286 GTADEPMGTIGIVTDITERKHMESQLRHLATTDELTGCLNRRAFFVAAEQELERASRYGN 345 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 ++V+++DID+FK +ND +GH GDK L I+ + + R+GGEEFA +P Sbjct: 346 AVSVLMIDIDHFKQVNDRHGHAVGDKALKAATAAIRANLREIDSFGRLGGEEFAAMLPET 405 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQK--TLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 LL+AE++R+ VE L LT S+GV + + ++++ AD Sbjct: 406 TLAGALLVAERLRQAVEAIALPLGDDQPPLRLTTSLGVAERQPGEVA----VDQVLARAD 461 Query: 292 TCLYRSKKDGRNRT 305 T LYR+K +GRNR Sbjct: 462 TALYRAKAEGRNRV 475 >UniRef50_A8ZX32 Diguanylate cyclase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX32_DESOH Length = 396 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 134/336 (39%), Gaps = 36/336 (10%) Query: 4 DWFSEQFSTGVL----IVPCMLTLAIPGVLPRFKAEQMMPAIA-------LIVSVIASVV 52 +WF +L V +L I R + + P + +++ S Sbjct: 62 EWFDRSIVIALLSLYGFVFVLLLYFILAAFHRRRQKSSWPLMENIMFGSYVVIVCAGSWF 121 Query: 53 IGGA-----------GSLAFPLPALIWCAVRYTPQVTCLLTFV----TGAVEIVLVANSV 97 G S++ L + + Y L+ F+ +G + + Sbjct: 122 TGTYYTFGALFLFFGASISSSLADIRKVRLAYLASFGALVAFIVMDSSGMFRHAPLFTRI 181 Query: 98 IDISVGSPFSIPQMFSARLGIATMAICPI-MVSFSVAAINSLMKQVALRADFDFLTQVYS 156 GSP + + ++ + I +V+F + + + D LT++ + Sbjct: 182 PLHPDGSPLPVWFGVQVFITVSLTIMLYITIVTFKRWGVREDV--YRKMSTVDGLTRLTN 239 Query: 157 RSGLYEA----LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV 212 R E L S + + H++ +++DID+FK+IND YGH GDKVL A + + Sbjct: 240 RRTFIERSEKELSSGQRRPSSHISCIMIDIDHFKAINDTYGHAAGDKVLVKIATILTEKA 299 Query: 213 GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSG 272 V R GGEEFA+ +P+ + +AE+ R + + +T S GV S Sbjct: 300 RPTDEVGRYGGEEFAMLLPATTLAGAVKVAERQRASIANAEIIVDGNIIQVTASFGVASC 359 Query: 273 RASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + + D+ N+L+ AD LY +K+ GRNR Sbjct: 360 PSDDI---DNINELLKTADVALYEAKRAGRNRVVAA 392 >UniRef50_B1KMS8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KMS8_SHEWM Length = 482 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 110/244 (45%), Gaps = 8/244 (3%) Query: 65 ALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 L + A +Y + + + +L + + +++ S +I + I Sbjct: 230 PLTFIAKKYRLEYLSEIQKHISYDDTILDSRMDLTMTLPSNETIKVEMAFSTLIFEKKKL 289 Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLD 181 I + L Q+ + A D LT Y+R E + +Q Q T++L+D Sbjct: 290 VITAITDITERKRLETQLRILASTDPLTGAYNRRCFNELSQKSMSSTERQEQEFTILLID 349 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FKSIND +GH GD VL + I + + ++ R GGEEF VA+P+ + + Sbjct: 350 LDFFKSINDKFGHAAGDDVLIETVKAINTCIRESDILGRYGGEEFVVALPNSDNKKAREV 409 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 A +IR +E Q + LT SIG+ + + K + +ADT LY +K +G Sbjct: 410 ANRIRLCIENMVVKTQGHDIKLTASIGLATSSGGH-----QLEKQINQADTYLYYAKDNG 464 Query: 302 RNRT 305 RN+ Sbjct: 465 RNQV 468 >UniRef50_C8QVV3 Diguanylate cyclase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QVV3_9DELT Length = 519 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 13/212 (6%) Query: 100 ISVGSPFSIPQMFSARLGIAT---MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 156 ++ + F RL +A + I + + + L+++ A D LT + + Sbjct: 302 LAEIGQIGAEEDFGRRLPVAAGHEIGIIARHFNKLLEVVERLLREKDQLAGTDQLTGLNN 361 Query: 157 RSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVG 213 R E L ++ + L++++ DID+FK +ND YGHE GD VL A+ +Q V Sbjct: 362 RRRFKELLDQELIRYRRIPKPLSLLIFDIDHFKRVNDTYGHETGDLVLKEMAQLLQATVR 421 Query: 214 DKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGR 273 AR GGEEF V +P+ + +AEK+R+ +E F +T S GV + Sbjct: 422 RTDTPARWGGEEFLVLLPATTAEAAMALAEKLRQAIEEHDFPRVG---RVTASFGVAAFH 478 Query: 274 ASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 + L+ D LY++K+ GRNR Sbjct: 479 DGEQEES----ALLRRVDKALYQAKRQGRNRV 506 >UniRef50_Q3AFS2 GGDEF domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFS2_CARHZ Length = 543 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 98/171 (57%), Gaps = 7/171 (4%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGH 194 L ++ A D LT +Y+R E L L+ +H T++LLDIDYFK IND YGH Sbjct: 371 LYLRLKELAQKDELTGLYNRRYFLERLNEEHLRSRRHKLNYTIVLLDIDYFKKINDTYGH 430 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 +CGD VL+ F R ++ + L AR GGEEF V +P + L+AE++R+ V+ + Sbjct: 431 DCGDLVLNDFGRFLKDTLRRTDLSARYGGEEFVVLLPQTGKKEAYLLAERLREKVKERVL 490 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +Q + + TVS+G+ + Y +++ +L+ AD LY++K GR++ Sbjct: 491 IFQGQKVKYTVSMGLAA----YPEDAEEYRELLSLADKALYQAKNRGRDKV 537 >UniRef50_C1SIQ7 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIQ7_9BACT Length = 312 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 105/231 (45%), Gaps = 8/231 (3%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 +T + +IV V PF+ ++ + ++ + Sbjct: 83 VIFITAKSEPEDIVKGFQMGGVDYVTKPFNEAELLMRINTHMELKRARDLLEEKNKELIE 142 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGH 194 ++ A D LT + +R + L + + ++ ++++ DID+FK +ND YGH Sbjct: 143 AYDKIEHLALTDTLTGIANRRNITNMLGKEAARCKRNKGKFSLIMCDIDFFKRVNDTYGH 202 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD VL + IQ+ + ++ +VAR GGEEF + +P + + + +AEK+R + Sbjct: 203 DAGDYVLKTISHVIQQALREQDIVARWGGEEFLIVLPETDAGNAVAVAEKLRTAIGNTEM 262 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +++ + +T++ GV S K + +AD LY K+ GRN+ Sbjct: 263 SYEGISFSVTMTFGVSEYDVSL-----GIEKSIKKADDALYEGKQTGRNKV 308 >UniRef50_UPI000185121C diguanylate cyclase n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI000185121C Length = 466 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 7/187 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDI 182 +++ + + +L Q+ A +D LT +Y+R + E S +Q T++L+DI Sbjct: 277 LIIFTDMTEVKNLQSQLEHFAYYDELTGIYNRRAFFQYCEEAFQESKEQDTPFTIILMDI 336 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK +ND YGH GD+VL A+ Q + L AR GGEEF + V +G +A Sbjct: 337 DYFKKVNDTYGHSVGDQVLEQVAKVCQSQLHGHELFARYGGEEFVLGVKGYTEEEGAALA 396 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R VE + +T+S+GV + + +++ AD LYR+K+ GR Sbjct: 397 EQLRSEVEALTIHTPDGKITVTLSLGVAALTKE----DEALYQILNHADQALYRAKEAGR 452 Query: 303 NRTSTMR 309 NR + Sbjct: 453 NRVCVYQ 459 >UniRef50_Q67JR0 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67JR0_SYMTH Length = 425 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 7/183 (3%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDY 184 V ++A L + A D LT Y+R E + ++ + +++L+DID+ Sbjct: 223 VFRDISARKRLESDLKHLATTDGLTGAYNRRSFVEVCGQELQRADRRARPTSLLLMDIDH 282 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK +ND +GH GD+VL ++++ + +V R+GG+EFAV +P+ +AE+ Sbjct: 283 FKRLNDRFGHAAGDEVLRQIVETGRRVLRSEDVVGRIGGDEFAVLLPATTLEQAGRVAEQ 342 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +R E + T TVS GV + T +L+ AD LY +K GRN Sbjct: 343 LRTTYERLAVPARGGTATFTVSFGVAEWKPHLRT----VEELLQRADRALYAAKNAGRNC 398 Query: 305 TST 307 T Sbjct: 399 VRT 401 >UniRef50_C6P3N4 Diguanylate cyclase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3N4_9PROT Length = 387 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 80/314 (25%), Positives = 137/314 (43%), Gaps = 20/314 (6%) Query: 11 STGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGA--GSLAFPLPALIW 68 S+ VLI+ + PR++ + LI +++ + G G + F L ++ Sbjct: 77 SSYVLILAAVYEFQQRSA-PRWQYFVPVILTLLIAAILIDDIHGRFIWGGIVFVLQLVLI 135 Query: 69 CAVRYTPQVT------CLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMA 122 + + T LL V +VL S++ +S + P+ + ++ Sbjct: 136 ASELLRNRATHTGRAWRLLLAGIAIVVVVLGLRSLVAMSGQFILAQPETGGVPNWVQVLS 195 Query: 123 ICPIMVS-------FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP-SLKQTQH 174 +M S F + ++V A D LT V +R L + + + + + Sbjct: 196 FVAVMASSLLGSIGFLLMVKERTDREVLHLAMTDSLTGVPNRRALMDYAERAMAQRGGRS 255 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 + ++++D D+FK IND YGH GD+VL R +Q+ + L+ R GGEEF V P + Sbjct: 256 VALLMIDADHFKRINDTYGHPVGDEVLRQLTRLLQQRLRGGDLLGRYGGEEFCVVAPDAD 315 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 L +AE +R+ V +Q L +TVSIG+ A ++ EAD L Sbjct: 316 AEGALKLAESLRESVASAVLDTEQGKLSITVSIGIAHSTA---DAGRALKDILAEADIAL 372 Query: 295 YRSKKDGRNRTSTM 308 Y +KK GRN+ + Sbjct: 373 YSAKKGGRNQVVSF 386 >UniRef50_B0C2A6 Diguanylate cyclase (GGDEF domain), putative n=3 Tax=Acaryochloris marina MBIC11017 RepID=B0C2A6_ACAM1 Length = 420 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 9/186 (4%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKSIN 189 ++ KQ++L A+ D LT + +R E L+ + ++ Q L++++ DID+FK N Sbjct: 238 KKLDEANKQLSLIANHDALTGLANRRRFDEYLQQIWKQTQREQQPLSLLICDIDFFKQYN 297 Query: 190 DNYGHECGDKVLSVFARHI-QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 D YGH GD L A+ I Q IV LVAR GGEEFA+ +P+ + G ++AE++R Sbjct: 298 DTYGHLEGDICLRTVAQKIHQTIVRPLDLVARFGGEEFAIVLPNTDLEGGQVVAERLRMI 357 Query: 249 VELQPFTWQQKTLY--LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 ++ + ++ +TVSIG + R+ T + L+ AD LY++K+ GR++ Sbjct: 358 IQKSQLPHRGSSVSEFVTVSIGAATVRSHPHT---SVSSLISRADQALYQAKQSGRDQVV 414 Query: 307 TMRYGE 312 + E Sbjct: 415 ALSITE 420 >UniRef50_B8DJ36 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DJ36_DESVM Length = 698 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 7/172 (4%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECG 197 ++ A D LT V +R L+ + + + L+V+LLD D+FKSIND +GHE G Sbjct: 506 RLEQLATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLLDADHFKSINDTWGHEAG 565 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL + + + L+ R+GGEEF V +P L AE+IR VE P + Sbjct: 566 DMVLRHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALRTAERIRAAVEDAPVAVR 625 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + TVS+G R + D + L+ AD L R+K++GRNR + Sbjct: 626 DVWVGCTVSVGAAEYRGA----NDSLDDLIRRADHMLMRAKEEGRNRVCAQQ 673 >UniRef50_Q02P32 Putative two-component response regulator n=6 Tax=Pseudomonas aeruginosa RepID=Q02P32_PSEAB Length = 525 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 103/187 (55%), Gaps = 8/187 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLL 180 ++ + ++ ++ +++ L A D LT +++R E + + + ++L Sbjct: 339 ATLIWCYDISRRKAMEQELRLLASTDTLTGLHNRHSFLHQAELMLKAAERFRHPCVALML 398 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK+IND++GH GD+ L A +++ + + L+ R+GGEEFA +P V+ L Sbjct: 399 DIDHFKNINDSHGHLTGDRALQRVAETLRQGLREVDLLGRLGGEEFAALLPEVSLDQALD 458 Query: 241 MAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE++R GVE + + L +TVSIGV R DD L+V AD+ LY++K Sbjct: 459 VAERLRAGVEALRVSNPDGEPLRMTVSIGVALRR----DAGDDLESLLVRADSALYQAKS 514 Query: 300 DGRNRTS 306 GRNRT Sbjct: 515 GGRNRTE 521 >UniRef50_Q7NZV8 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NZV8_CHRVO Length = 383 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 7/171 (4%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHE 195 KQ+ A D LT++ +R E + +H ++V+++D+D+FK IND+YGH Sbjct: 209 EKQLYRLATQDGLTELNNRRQFIELADREIERSRRHGSRMSVLMMDLDHFKDINDHYGHA 268 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD+V+ F++ ++++ L R+GGEEFA +P D +AE++R + Sbjct: 269 VGDEVIRHFSQVCREVLRASDLCGRLGGEEFAAVLPDTGLDDARQVAERLRSLASSARLS 328 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +L TVSIGV A D ++++ AD LY++K+DGRNR S Sbjct: 329 AVSGSLGYTVSIGVAERHADET----DIDEVLGRADKQLYQAKRDGRNRVS 375 >UniRef50_Q3JE99 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Nitrosococcus oceani RepID=Q3JE99_NITOC Length = 661 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 16/244 (6%) Query: 74 TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAI--------CP 125 +LT + E + + + D + PF+ ++ AR+G I Sbjct: 394 RQIYLIVLTGMVSGGEAIRIFEAGADDHIAKPFNY-EVLQARVGGGERLIRLREEAEQER 452 Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDI 182 V +A + +++ A D LT + +R E ++ + + +++D+ Sbjct: 453 EAVRGYLADLAVANRRLGQMAMTDSLTGLPNRRYAMERMEQAWAEYERNQTPFSCLVMDL 512 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK +ND YGHE GD VL A + ++ R+GGEEF V P + +A Sbjct: 513 DFFKRVNDQYGHEIGDSVLLEIANVFRGSARSSDIICRLGGEEFLVVCPHTVATEAFQVA 572 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R+ VE +T T L+VSIG+ + D L AD LY++K++GR Sbjct: 573 ERLRRAVEEHSWTMLDSTSVLSVSIGLAASSEGMQHWND----LYRLADQALYQAKRNGR 628 Query: 303 NRTS 306 NR Sbjct: 629 NRVC 632 >UniRef50_Q0BZW4 Response regulator PleD n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZW4_HYPNA Length = 455 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 9/199 (4%) Query: 115 RLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQ 171 R +A + + + + + + D LT +++R + E + + Sbjct: 259 RQELAARIRTQTRRTRYIDILRQRVDRGLELSVIDQLTGLHNRRYMNGQLEQFMQRAARG 318 Query: 172 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 Q L++M+ DID+FK++ND +GH+ GD VL + ++ V +V R GGEEF V +P Sbjct: 319 NQPLSLMMTDIDHFKAVNDTHGHQAGDDVLREIGKRLRANVRPTDVVCRTGGEEFVVLMP 378 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKT--LYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 + AE+IRK V + F + L +TVS GV + + + D + LM Sbjct: 379 NTPGDLACAAAERIRKAVAAEEFPVLGGSQNLRITVSAGVSTLQGA----GDTTDDLMHR 434 Query: 290 ADTCLYRSKKDGRNRTSTM 308 ADT LY++K GRNR ++ Sbjct: 435 ADTALYQAKTGGRNRVESI 453 >UniRef50_Q8DCJ9 FOG: GGDEF domain n=3 Tax=Vibrio RepID=Q8DCJ9_VIBVU Length = 479 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDF 150 + A+ ++ + I FS + I IM ++ L + A D Sbjct: 258 IARADLLLMLPEKKDIPIEMAFSRLVFEGKPMI--IMSITDISERKKLEAMLRNLAATDP 315 Query: 151 LTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARH 207 LT ++R E + + L++M+LDID+FK ND+YGH GD VL + Sbjct: 316 LTGAFNRRSFMEQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGDLVLVELVKM 375 Query: 208 IQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSI 267 + ++ R+GGEEFAV +P + + +A+++R VE ++Q+ L +T+SI Sbjct: 376 ADLSTREIDIIGRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVNYEQQPLQMTISI 435 Query: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 GV + + S L +LM +AD LY +K GRN + Sbjct: 436 GVATLQPSELNTP--LEQLMKQADEGLYYAKAHGRNCVIS 473 >UniRef50_Q315M6 Diguanylate cyclase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315M6_DESDG Length = 403 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 12/302 (3%) Query: 18 PCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSL---AFPLPALIWCAVRYT 74 C+L + A A+ + + V+ + + F LP + Sbjct: 99 YCVLYFFLRTSGMLKVASDFALALTVTLGVLLIWRLNDQIAYILWLFALPPAAFFTFGTK 158 Query: 75 PQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM-AICPIMVSFSVA 133 L + + V+ + + S ++ +A ++ A+ + + Sbjct: 159 RAAVALGLLLIALLLSPFVSPAAMPPETFSLSYFVRVIAAFFTLSLFSALGEYSRAHTQR 218 Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSIND 190 + +L +++ A D LT + +R G+Y+ L + T+ +V+L D+D+FK++ND Sbjct: 219 TLVALTREMEQCACTDPLTGLLNRRGIYDRLNEERARATRSGSTFSVILCDVDHFKNVND 278 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 +GH+CGD VL A H ++ V + +V R GGEEF +P + L +AEK+R VE Sbjct: 279 CFGHQCGDHVLHQLAEHFRRSVRGQDVVCRWGGEEFLFILPETDEQGALNLAEKLRSTVE 338 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 P + + +T+S+GV TLT+ + AD LY +K+ GRN+ + Sbjct: 339 QTPVNYHGMPIDITLSLGV-----QECTLTESTEFHIRVADQKLYIAKEHGRNKVVSGNI 393 Query: 311 GE 312 E Sbjct: 394 EE 395 >UniRef50_C6P6Y5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6Y5_9PROT Length = 671 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 97/207 (46%), Gaps = 9/207 (4%) Query: 108 IPQMFSARLGIATMAICPIMVSF-SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS 166 +P S I I+V+F + +++ RA D LT + +R YE + Sbjct: 469 LPISVSVSAIIREQQAAGIVVAFHDITERKKFEQELERRAQIDALTSLNNRRHFYELAEQ 528 Query: 167 PSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 L+ + L +M+LD+D+FK IND YGH GD VL + + + ++ R+GG Sbjct: 529 EILRTKRYGKPLALMMLDVDHFKDINDTYGHHVGDTVLQTLGAVCLQTMREIDIIGRLGG 588 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDD 282 EEFA+ +P AE++R V + +TL T+SIGV A D Sbjct: 589 EEFAILLPEATAAQAFDAAERLRLAVAAIAMPLEQGQTLSFTISIGVTGLVA----KDSD 644 Query: 283 FNKLMVEADTCLYRSKKDGRNRTSTMR 309 ++ AD +Y++K+ GRNR + Sbjct: 645 IADMLKRADEAMYQAKRSGRNRVCSQE 671 >UniRef50_C0QPI4 Response regulator n=1 Tax=Persephonella marina EX-H1 RepID=C0QPI4_PERMH Length = 615 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 79/254 (31%), Positives = 117/254 (46%), Gaps = 27/254 (10%) Query: 64 PALIWCAVRYTP-QVTCLLTFVTGAVEIVLVA----NSVIDISVGSPFSIPQMFSARLGI 118 P I C TC+ +V G V I+L S ++I PF A L Sbjct: 372 PNFIKCENGEAEEFFTCIPIYVGGRVGIILQLIYDKESRVNIKNKLPF-----IEAYLRE 426 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHL 175 I S M+++ ++ D LT +Y+R L E L ++++ + Sbjct: 427 VAPVI----------EAKSYMEKLRKQSLVDQLTGLYNRRFLEELIPKLSQQTIRRKSTI 476 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 ++++D+D+FK +ND YGH+ GD VL A + K V + +V R GGEEF V + V Sbjct: 477 GILMVDVDFFKQVNDQYGHDVGDTVLKRVADILNKSVREADIVVRYGGEEFIVLLVDVEK 536 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 + +AEKIRK VE TL TVSIGV + +D F + + AD LY Sbjct: 537 GKSVEIAEKIRKKVENMVIHTDGVTLKKTVSIGVSE----FPHDSDRFWQCIKFADIALY 592 Query: 296 RSKKDGRNRTSTMR 309 R+K+ GRN+ Sbjct: 593 RAKETGRNKVVRFE 606 >UniRef50_Q2BP61 GGDEF/HAMP domain protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP61_9GAMM Length = 580 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 7/184 (3%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDY 184 + V A +++ A D LT+V +R + + S + + L ++LLDID+ Sbjct: 395 LQLEVNARKKAEEELIKLASTDPLTRVLNRRAFDQRSREEIERSHRYNRELAIILLDIDH 454 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK IND YGH+ GDKVL A I + + R GGEEF + +P + LL+AE+ Sbjct: 455 FKQINDQYGHQFGDKVLIDVANLIGPSLRAADCLCRHGGEEFIILLPETDEATALLIAER 514 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +RK + T + +L +T S GV R D + AD +Y++K GRN+ Sbjct: 515 VRKSIAQHKITDRHDSLSITASFGVAVWRRE----EGDIQPAVYRADQAMYKAKNSGRNK 570 Query: 305 TSTM 308 Sbjct: 571 VVAF 574 >UniRef50_Q4ZZT3 GGDEF n=5 Tax=Pseudomonas syringae group RepID=Q4ZZT3_PSEU2 Length = 690 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 8/171 (4%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHE 195 +++ +A D LT + +R+ E L+ + + L V +LD+D+FK IND YGH Sbjct: 523 LEEQRQKALIDPLTGLPNRAAWGERLEREMARWHEEKNSLLVCILDLDHFKRINDGYGHL 582 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GDKVL + A + K + +AR GGEEF + +P+ P GL + +++R VE PF Sbjct: 583 AGDKVLKIVANVLSKRLRADDFMARFGGEEFVMLLPATPPATGLKLLDELRAAVESCPFH 642 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 ++ + + +TVSIG+ + R S + + + AD LY++K++GRNR Sbjct: 643 FKGERVTITVSIGMTAFRPSERS-----DTAIKRADQALYKAKENGRNRIE 688 >UniRef50_Q31EI0 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EI0_THICR Length = 620 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 10/184 (5%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDID 183 ++ + Q+ D LT VY+R L+ + + ++ +DID Sbjct: 438 VLMTDITEEEHYKSQLEHLIIHDELTGVYNRHYFNRTLEQEIKRHQRYQSPFSMAFMDID 497 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK IND YGH+ GD VL A++I ++ + R+GGEEF + +P + + L+++E Sbjct: 498 HFKMINDTYGHDVGDAVLVSLAKNISSLLRSTDVFCRVGGEEFVIMMPETSLENALIISE 557 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +IR VE + + +T+S+G+ + D+ AD LY++K++GRN Sbjct: 558 RIRSTVEG--ISSKDVPEKITISMGLVELNSW-----DNVQSFYKRADEALYKAKENGRN 610 Query: 304 RTST 307 R T Sbjct: 611 RIET 614 >UniRef50_C0Z6I5 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6I5_BREBN Length = 530 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 8/184 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFK 186 + F++ I +Q+ A D LT + +R L E ++ +Q ++M++D+D FK Sbjct: 354 AIRFALTNIKKKTEQLTHDARTDPLTGLTNRRTLEETMQKWMAEQ-IPFSIMMMDLDRFK 412 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +IND YGH+ GD+VL FA+ I + + + R GGEEF V V + +AE+IR Sbjct: 413 AINDTYGHQAGDEVLRHFAKIISSSLRPEDVSCRFGGEEFVVLVSHTGLEEAYQVAERIR 472 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + +E + Q LTVS G+ Y + L+ AD +Y++K+ GRN+T Sbjct: 473 RALETRTNPIGQ---RLTVSQGIA----HYPSHAVSPEGLLHVADEAMYKAKRAGRNQTM 525 Query: 307 TMRY 310 Sbjct: 526 IAEE 529 >UniRef50_Q479Y1 GGDEF n=1 Tax=Dechloromonas aromatica RCB RepID=Q479Y1_DECAR Length = 413 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 13/228 (5%) Query: 83 FVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQV 142 + L + + D + S M + I MA +M++ + ++ Sbjct: 163 LLIRPWLFSLGKSGLFDAAQAIAVSQFVMVESIAAIVLMAFGIVMLANEQVTL-----EL 217 Query: 143 ALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK 199 A+ D LT V++R L S S + L++ML+D+D+FK IND +GH+ GD+ Sbjct: 218 RAIAERDPLTGVFNRRSFLTLLDKSISHSDRMASPLSIMLIDLDHFKKINDTWGHKSGDE 277 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 L F + + ++ R+GGEEFA+ +P + +AE++R V +P + Sbjct: 278 ALRHFVAVAVPCIRNGDIIGRVGGEEFAILLPDTDISKAATVAERLRCEVAARPVKNEHG 337 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 ++ LTVSIGV R + + AD +Y +K GRN+ Sbjct: 338 SITLTVSIGVTHYR-----KDEAPEVTLHRADNAMYTAKDKGRNQVEV 380 >UniRef50_B7VQN9 GGDEF family protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VQN9_VIBSL Length = 405 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 18/271 (6%) Query: 41 IALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDI 100 + + +ASV++ G++A AL+ ++ +L + + + ID Sbjct: 129 FYITLCTVASVLVIKTGTVADVKAALVLLMSVFSAHSIFMLVRIW-----ITLKEPNIDD 183 Query: 101 SVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGL 160 + + SI Q+ I + + I +++ LM+ + + D LTQ+Y+R + Sbjct: 184 FLQAS-SIHQLA---FIITAILLSTIGFTYNWLLNARLMQSLYSSSMKDSLTQLYNRRAM 239 Query: 161 YEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGL 217 E L+ S++ L+V++LDID+FK +ND +GH+ GD+VL +Q + + Sbjct: 240 NEMLRREWMRSVRHNHPLSVIILDIDHFKQVNDQHGHQTGDQVLKKIGIILQHNLRAADI 299 Query: 218 VARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYL 277 R GGEEF + +P + +AEK+R +E F W+Q++ LT S G+ A Sbjct: 300 PFRYGGEEFLIVLPDTRIGEACKVAEKLRIIIEETKF-WRQQSANLTASFGLSELWAE-- 356 Query: 278 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 D ++ AD LY +K++GRN + Sbjct: 357 ---DKVPSMIKRADEALYYAKENGRNTVCAL 384 >UniRef50_C6DCR6 Diguanylate cyclase n=6 Tax=Pectobacterium RepID=C6DCR6_PECCP Length = 532 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 101/181 (55%), Gaps = 8/181 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFK 186 ++ F ++ + +++L+A D LT + +R G+YE+++ K Q + +++DID+FK Sbjct: 347 VILFGTLLLHKRIGKLSLQAHTDPLTGLLNRRGIYESIELILPKSNQ-VAAIVIDIDHFK 405 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +ND YGH GD V+ + A+ I++ + L+ R GGEEF +P + + +AE++R Sbjct: 406 RVNDTYGHNIGDDVIRLLAKSIKQGSRESDLICRTGGEEFLALLPDTDMKQAVDIAERLR 465 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 K VE P + +T+S+GV + + ++ AD LY++K +GRNR Sbjct: 466 KKVEKMPLPIPE---NITISLGVTCFIPG----AEQIDNVLKIADDALYQAKHEGRNRVV 518 Query: 307 T 307 T Sbjct: 519 T 519 >UniRef50_A5UZW7 Diguanylate cyclase with GAF sensor n=2 Tax=Roseiflexus RepID=A5UZW7_ROSS1 Length = 797 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 108/226 (47%), Gaps = 8/226 (3%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDF 150 V+ + ++ + FS R G A + I ++ L + A D Sbjct: 576 VVAGDRMLGVLAVYHLHDHSHFSERDG-AMLEIVGRQTGIAITNA-QLFTETQRLATTDQ 633 Query: 151 LTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARH 207 LT +++R + + + + ++++D+D+FK+IND YGH GD VL A H Sbjct: 634 LTGLFNRYHFFALAPRELERARRYRHDVALLIIDVDHFKTINDTYGHVAGDTVLQHIADH 693 Query: 208 IQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSI 267 +++ + D ++AR GGEEF +P N L +A ++R +E P +++ T+S+ Sbjct: 694 MRRELRDADILARFGGEEFIALLPETNLTGALRVAGRLRATIEANPVPLNGQSIRATISV 753 Query: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST-MRYGE 312 G S + T + + L+ AD LY +K GRN+ ++ YG+ Sbjct: 754 GCASLHPA--TRDEHLDTLIQRADRALYTAKAGGRNQVASDASYGD 797 >UniRef50_B7K319 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Cyanothece RepID=B7K319_CYAP8 Length = 660 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 16/212 (7%) Query: 105 PFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL 164 S+ + +A+LGIA I S + + +++A A+ D LTQV +R E L Sbjct: 454 EMSLLESVAAQLGIA------IAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEIL 507 Query: 165 KSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVAR 220 ++ Q L++++ D+DYFK ND YGH+ GD+ L A+ I K V LVAR Sbjct: 508 AQRWKQCAREKQPLSLIMCDVDYFKRYNDFYGHQMGDECLIKVAQTIAKTVQRPGDLVAR 567 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSGRASYLT 278 GGEEFAV +P+ + +A+ IR+ V+ + + +++S+G+ + T Sbjct: 568 WGGEEFAVILPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKT 627 Query: 279 LTDDFNKLMV----EADTCLYRSKKDGRNRTS 306 L ++ L+ +AD LY++K+ GR+R + Sbjct: 628 LENNHESLIKALIAQADQALYQAKEQGRDRIA 659 >UniRef50_A0YVG8 GGDEF/response regulator receiver domain protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YVG8_9CYAN Length = 329 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 21/245 (8%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 LT ++ + PF P++ + + + ++ +N Sbjct: 84 VIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLAR-------VRVHLELKYTKDELNK 136 Query: 138 LMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGH 194 +A D LT +++R L E ++ + ++++LDID+FK +ND YGH Sbjct: 137 KSAAFEKQAITDPLTGIFNRRHLMSISEIEYQKAVNYNRLFSIIMLDIDHFKKVNDTYGH 196 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD+VL + +Q ++ + + R GGEEFA+ +P + L +AE++R+ + Sbjct: 197 IVGDQVLKRMTQEVQNLLREGDVCGRFGGEEFAIILPGADLKIALKIAERLRQAIADFYI 256 Query: 255 TWQQK------TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST- 307 + +T+S+GV + Y D +K+ AD LY++K GRN+ + Sbjct: 257 PIYDSNSSSNLKIKITISLGVTT----YHIDDDKLDKMWRRADDALYQAKAKGRNQVCSI 312 Query: 308 MRYGE 312 GE Sbjct: 313 YEPGE 317 >UniRef50_Q314F9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314F9_DESDG Length = 542 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 3/184 (1%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFK 186 F ++ M+ + + D LT +++R L + + + ++LDID+FK Sbjct: 350 FMAERVSQQMRDLEHLSFCDTLTGLHNRRHLAHEGTRTITACTEADLPCSCLMLDIDFFK 409 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +ND +GH+ GD VL AR I V K + RMGGEEFAV P+ + +AE+IR Sbjct: 410 QVNDAWGHDAGDMVLQSVARTISNAVRSKDMTIRMGGEEFAVIAPATDTASAFSLAERIR 469 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + +E P + +T+SIGV + + T + L+ +AD LY++KK GRNRT Sbjct: 470 RNIESTPVQAADDEIRITISIGVADMGGAPIFGTTQLDDLLAKADRALYQAKKKGRNRTE 529 Query: 307 TMRY 310 Sbjct: 530 IWSE 533 >UniRef50_Q47Y21 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Y21_COLP3 Length = 722 Score = 226 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 16/283 (5%) Query: 31 RFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEI 90 + K E + +A+++ ++ ++ A L + + + + ++T L ++ Sbjct: 451 KLKKEGYLIILAMLIFLLVAIFF--ALVLNYSIISPV-------RKLTYALNDMSEGQNN 501 Query: 91 VLVANSVIDISVGS-PFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFD 149 + + +GS + ++ L + S A D Sbjct: 502 IHFNHIDSKDEIGSMQLAFEKLRRKLLQGDVYKATVSQQQKEIKYRKSQQDHFQQLALTD 561 Query: 150 FLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFAR 206 LT +R E L L++MLLDID+FKS+ND YGH GD+VL +F + Sbjct: 562 ALTGAVNRHHFNEVLDQEIANVNNHGSPLSIMLLDIDHFKSVNDRYGHGVGDEVLVMFYQ 621 Query: 207 HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVS 266 + V +VAR+GGEEF + +P+ V+ AE++R+ + + +TVS Sbjct: 622 TCVEAVRSSDVVARIGGEEFVIIMPNTQLVNAQKFAERLRQKIAKLELNIANNQISVTVS 681 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 IGV ++ Y T + F + AD LY++K GRN+ + Sbjct: 682 IGVSQWQSEYFTNAETF---VAHADKSLYQAKNSGRNKVVVAQ 721 >UniRef50_Q1D632 GAF domain/GGDEF domain protein n=2 Tax=Cystobacterineae RepID=Q1D632_MYXXD Length = 710 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 60/194 (30%), Positives = 107/194 (55%), Gaps = 8/194 (4%) Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQH 174 + + + I + +V L +Q+ A D LT +Y+ + + + S + + Sbjct: 506 LRMIEVIAIQAAQAVLRA-QLYEQMERMATTDGLTGLYNHRTFQAKADEVLAQSRRYQRK 564 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 +++L D+D+FKS+ND YGH GD+VL AR I+ + D +VAR GGEEF + +P + Sbjct: 565 FSLILTDVDHFKSVNDTYGHPTGDQVLKGVARIIKTMARDTDIVARYGGEEFVIIMPETD 624 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 ++E+IR+ V+ + F + L +T+S+G+ + S + +L+ AD CL Sbjct: 625 AKGAFTISERIREAVKAEVFQTEMGPLRITMSLGIATFPDSAMEK----QQLIDLADQCL 680 Query: 295 YRSKKDGRNRTSTM 308 Y SK++GRN++ T+ Sbjct: 681 YHSKRNGRNQSVTV 694 >UniRef50_C4XKN6 Putative signaling protein n=2 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKN6_DESMR Length = 629 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 6/188 (3%) Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTV 177 ++ + + + +++ A D LT + +R E L + + +L++ Sbjct: 428 ISTGIFAAARDITERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMAKRHKANLSI 487 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 L DID+FK +ND +GHE GD VL ++ ++ R+GGEEFAV +P + + Sbjct: 488 ALFDIDHFKQVNDTWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAVIMPETDKEE 547 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 +L +E+ RK VE F ++ L +TVSIG+ + T N L +D LY + Sbjct: 548 AILASERFRKIVESTRFEYENDLLSITVSIGIAQFNPNTNT---TINDLTKISDDALYTA 604 Query: 298 KKDGRNRT 305 K +GRN Sbjct: 605 KANGRNMV 612 >UniRef50_Q3KAB6 Putative GGDEF domain regulatory protein n=2 Tax=Pseudomonas fluorescens RepID=Q3KAB6_PSEPF Length = 559 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 68/191 (35%), Positives = 94/191 (49%), Gaps = 11/191 (5%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDY 184 V+ AA+ ++ A D LT VY+R E L SL + + ++L+D D+ Sbjct: 372 VAQRTAALTLANAELLNLATHDGLTGVYNRRRFDEKLTEYSLLFRRTGRPFALLLIDADH 431 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG-LLMAE 243 FK IND +GH GD VL A+ IQ + VAR GGEEFAV +P + D ++AE Sbjct: 432 FKRINDTHGHAAGDDVLRQLAQLIQISIRSTDFVARYGGEEFAVLLPEIAKPDTPDIVAE 491 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 KIR + F +TVSIGV + T T L+ AD LY++K GRN Sbjct: 492 KIRSAIAEADFPAVG---PVTVSIGVSLADPADNTPT----TLVKRADQQLYKAKAAGRN 544 Query: 304 RTSTMRYGEEV 314 + + EV Sbjct: 545 QVACQASLFEV 555 >UniRef50_A1TWP6 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A1TWP6_MARAV Length = 565 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 9/189 (4%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDY 184 V + +Q+ + D LT V +R E L++ +L+ L+++LLDID+ Sbjct: 372 VRERTEELEQANEQLRAISLTDGLTHVANRRRFDEKLETEWNRALRHEHELSLILLDIDH 431 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 FK +ND +GH GD L A + V LVAR GGEEFA+ +P+ + +AE Sbjct: 432 FKQVNDRFGHLVGDDCLVALASILSDEVQRSGDLVARYGGEEFAILLPTTDVAGAQQVAE 491 Query: 244 KIRKGVELQPFTWQQK--TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 ++R V P + + LT+S+GV + + + D +L+ AD LY +K DG Sbjct: 492 RMRLSVARTPVNSGEHMSPVSLTISLGVATLTPNRQS---DCQELIRRADEALYAAKSDG 548 Query: 302 RNRTSTMRY 310 RNR Sbjct: 549 RNRVVVWHP 557 >UniRef50_D0LHJ8 Diguanylate cyclase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHJ8_HALO1 Length = 303 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 9/223 (4%) Query: 86 GAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALR 145 G + + ++ P + + AI ++ + A S +++ Sbjct: 76 GRWLVEDLGSTNGSYVNDMPVQRSPLQDSNFLKIGAAIFKFLLGAGIEA--SYYEEIYRM 133 Query: 146 ADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 D LT V+++ E L+ + + LT+++ DID+FK IND +GH GD VL Sbjct: 134 TIIDGLTGVHNKRYFVEFLEREIARCARHQRPLTLLMFDIDHFKQINDTHGHLTGDYVLK 193 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 +R +++ + + L+AR GGEEFA +P + V G+ E+IR+ V +PF ++ Sbjct: 194 EMSRRLRERIRKEELLARYGGEEFAAVLPETDHVGGMTFGEQIRQLVGGEPFEYEGDRFQ 253 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +T+S+GV + L D + AD LYR+K+ GRNR Sbjct: 254 VTISVGVHTLYGQSL----DVKGFIKHADDNLYRAKRSGRNRV 292 >UniRef50_Q1J2W1 Diguanylate cyclase, GAF, HAMP domains protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J2W1_DEIGD Length = 555 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 8/174 (4%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYG 193 L + ++ D LT +Y+R L E ++ Q L+++++D+D+FK ND YG Sbjct: 374 RLRATLRQQSIRDPLTGLYNRRYLEETFTRELARVQRRRQPLSLLMIDVDHFKQHNDTYG 433 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD +L A H+Q+ + +V R GGEEF V +P + AE +R+ VE Sbjct: 434 HALGDTLLRRLATHLQRFFRTEDIVCRYGGEEFVVLLPECDAPQAQARAEALRRSVENLA 493 Query: 254 FTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 T + LT+SIG AS+ L+ AD LYR+K GRNR Sbjct: 494 VTSNDAEFVALTISIG----GASWPDHATTPEDLLARADAALYRAKHRGRNRVE 543 >UniRef50_B9TNG7 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TNG7_RICCO Length = 204 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 5/186 (2%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDY 184 + F + +++ A D LT++++R E + + + L ++LDID+ Sbjct: 9 LGFVLMIKERSDREIRTLAMTDPLTKIFNRRAFMIQAEKELAAAERSGLPLAFLMLDIDH 68 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK IND YGH GD+VL + + + + R GGEEF +P + + +AEK Sbjct: 69 FKQINDKYGHAAGDEVLVRIVEVLSSHLRKQDTLGRYGGEEFCALLPGTDAQGAMALAEK 128 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +R V + ++ +L LT+SIG + +L T D+ +LM EAD LY++K GRNR Sbjct: 129 LRLEVAMTRIEVEENSLGLTLSIGGSTW--EHLGPTKDYRELMEEADRALYQAKTGGRNR 186 Query: 305 TSTMRY 310 + R Sbjct: 187 SLLYRT 192 >UniRef50_Q089K4 Diguanylate cyclase n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q089K4_SHEFN Length = 312 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 9/178 (5%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDIDYFKSIN 189 ++ +Q+ + D LT +++R + K + Q L+++++DIDYFK IN Sbjct: 133 TSLEQAHQQIESLVNTDQLTGMHNRRSYNQLAKQECARAIRFNQQLSLLVIDIDYFKVIN 192 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 DN+GH+ GD +L FA+ ++ ++R+GGEEF + +P + +++AE+IR+ + Sbjct: 193 DNFGHDGGDSILKQFAQICSDLLRQSDSLSRIGGEEFTIILPMTDGEGAMIIAERIREHI 252 Query: 250 ELQPFTW--QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 F + +TVSIGV S A + D L AD +Y +K+ GRN+ Sbjct: 253 AKHSFHTTQTNNNINVTVSIGVSSLTAGDKVIQD----LFSRADMAMYCAKRGGRNQV 306 >UniRef50_C4KD29 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Betaproteobacteria RepID=C4KD29_THASP Length = 634 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 62/177 (35%), Positives = 94/177 (53%), Gaps = 7/177 (3%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHE 195 +++A A D LT + +R AL + S + Q L+VM+LDID+FK IND++GH Sbjct: 457 NRRLAHAAMTDLLTNLPNRRSGMNALAKAWAASSRFEQPLSVMMLDIDHFKRINDSHGHA 516 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD VL A+ IQ+ + RMGGEEF V P+ + + AE++R+ VE Sbjct: 517 VGDTVLRDVAQAIQQSARKDDSMCRMGGEEFLVICPNTDLKAAVQAAERLRRMVERLRIQ 576 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 + + +VSIGV + + L+ AD LYR+K+ GRNR+ + G+ Sbjct: 577 AGETEIQTSVSIGVATREVGMTET----DALVNAADRALYRAKQAGRNRSCVVVQGQ 629 >UniRef50_A1U7E6 Diguanylate cyclase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7E6_MARAV Length = 405 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLP 64 W S + + + T IP V R +A ++ A A+ +IG G Sbjct: 98 WLSTTLVLVLAALMYVYTFHIPDVNLRIQAFSIVFA--------AACLIGATG------- 142 Query: 65 ALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 L L+ + V + + + L I Sbjct: 143 FLRHRESHNRMAGKMLIAMFLLVSAFFIFRFFRSFYEVPPEDFMNAGWLSALAIVAGEFL 202 Query: 125 PIMVSFSV--AAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVML 179 I+ SF A + L +++ A D LT +Y+R E S + + +++ Sbjct: 203 VILSSFCTIWMASDELQDELSEIARIDPLTGLYNRRAFDECCDIEFSRAQRSGAPFAIIM 262 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 D+D+FK +ND YGH GD+VL FA +++ + +VAR GGEEF + +P + GL Sbjct: 263 CDLDHFKRVNDRYGHHVGDEVLRRFANTLKEHIRKHDVVARFGGEEFVLLLPGKDTEQGL 322 Query: 240 LMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AEK+R T L L+ S GV +S + ++ AD LY +K Sbjct: 323 EVAEKLRAKTADTQITIGDDVCLTLSASFGVAHYDSSDREWS----AVLHRADNALYAAK 378 Query: 299 KDGRNRTSTMRYGEEVV 315 K GRNR + + V Sbjct: 379 KQGRNRVVDLGTENQSV 395 >UniRef50_A7BV03 Sensor protein n=2 Tax=Beggiatoa sp. PS RepID=A7BV03_9GAMM Length = 866 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 110/238 (46%), Gaps = 29/238 (12%) Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV 132 Y +LT +T + + + D V PF I ++ + I V Sbjct: 644 YELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFDISEL-----------LARIRVGERT 692 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSIN 189 A A D LT+VY+R+ L + + + L++++ DID FK+IN Sbjct: 693 AIKKR-------EATIDGLTKVYNRNYFDMYLAQEVSRAKRYKRELSLIITDIDLFKNIN 745 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D YGH GD VL F + I + LVAR GGEEF + +P G ++AE++ + + Sbjct: 746 DTYGHLTGDTVLQEFTQIIMQQCRRSDLVARFGGEEFIILLPETPLKGGTIVAERMCQRI 805 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + F Q+ ++T S GV S L D +L+ AD+ LY++KK+GRN+ Sbjct: 806 DAHIF---QEVEHITASFGVAS-----LITDRDGRELLRRADSALYQAKKNGRNQVVV 855 >UniRef50_A6Q525 Signal transduction response regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q525_NITSB Length = 350 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 96/181 (53%), Gaps = 12/181 (6%) Query: 132 VAAINSLMKQVA---LRADFDFLTQVYSRSGLYEALKSPSLK----QTQHLTVMLLDIDY 184 IN L +++ +A+FD+LT++++R E + + + ++++LDID Sbjct: 172 YEEINHLRRELRDTKNKAEFDYLTELFNRRKFEEYFHKLLKEFNEGEGKPFSLIILDIDD 231 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK IND YGH GD+VL + I+ + + AR+GGEEFA+ +P + +AE+ Sbjct: 232 FKQINDTYGHLLGDEVLKNLSSLIKTFLHSAHIPARIGGEEFAILLPETPLDEAKTIAER 291 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +RK VE + + L TVSIGV + D + L+ AD LY +K++G+N Sbjct: 292 LRKTVENRTIPIAEGDLNFTVSIGVAQVQ-----KGDTMDSLLKRADEALYEAKRNGKNM 346 Query: 305 T 305 Sbjct: 347 V 347 >UniRef50_B9ZRW3 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZRW3_9GAMM Length = 791 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 11/183 (6%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 I + + L + +A +D LT +R L + + + +++LLDI Sbjct: 612 IAMFHDITRQKELEAALEHQAFYDPLTDAANRGYFETLLDQEARRAQRYAHPCSLLLLDI 671 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND +GHE GD+VL ++ + + ++ R GGEEF V +P + G +A Sbjct: 672 DHFKRINDTFGHEVGDEVLRFLVHALKGRLREADVLGRWGGEEFVVLLPGTDAERGQHVA 731 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++R+ V F +T+S+GV R + + AD +Y +KK GR Sbjct: 732 EQLREQVTATAFPCVG---LVTISLGVAECRP-----GESIRDWVKRADEAMYVAKKGGR 783 Query: 303 NRT 305 NR Sbjct: 784 NRV 786 >UniRef50_Q1K485 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K485_DESAC Length = 370 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 5/184 (2%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTVMLLDIDY 184 ++ ++ I ++A A D LT ++R E + + Q L++++ DID+ Sbjct: 184 LNEALDTIKKRNAEIAELAVRDSLTGSFNRGYFNETFPGAIRRAQRYQQSLSLIMCDIDH 243 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVDGLLMAE 243 FK IND+YGH+ GD+V+ A+ + + + +AR GGEEF + +P N L++AE Sbjct: 244 FKLINDHYGHQTGDRVIKSVAQGLAQSLRQGVDWLARYGGEEFVIVLPETNLEGALVVAE 303 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 ++R+ + Q +++ LT S GV + ++ N ++ AD CLY++KK+GRN Sbjct: 304 RMRRSIADQEIACDPQSIRLTASFGVAGCDPEHASML-TGNGMIAAADRCLYQAKKEGRN 362 Query: 304 RTST 307 + Sbjct: 363 CCCS 366 >UniRef50_Q2LS38 Response regulator protein with GGDEF domain n=2 Tax=Syntrophus aciditrophicus SB RepID=Q2LS38_SYNAS Length = 356 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 13/242 (5%) Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG------IATMAICPI 126 +T L + L I +GS SI ++ S + A + Sbjct: 113 LLVIITSALALGKLTTLLELALIGTCFIFLGSHSSINELLSLKYAGGMFAQFAPFVLVAY 172 Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDID 183 + + + I + +V + ++ D LT +Y+R G L S + ++ L+++L+D D Sbjct: 173 IATMFASDIRYGLNKVKMMSETDELTGIYNRRGFAIVAGRLLGQSARYSRPLSLLLIDSD 232 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 K IND YGH GD++L IQ + ++AR GG+EF + +P P L +AE Sbjct: 233 NLKKINDEYGHHAGDQLLITLVNTIQAQLRHTDILARHGGDEFIILLPETPPSGALDVAE 292 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +IR +E P + K ++ T SIGV SY + + + L+ +AD +Y +K GRN Sbjct: 293 RIRNAIETTPIVLEGKIVHTTASIGVA----SYPSEGYNIDVLLAQADHKMYAAKLGGRN 348 Query: 304 RT 305 R Sbjct: 349 RV 350 >UniRef50_Q1K453 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K453_DESAC Length = 481 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 9/208 (4%) Query: 105 PFSIPQMFSARLGIAT-MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY-- 161 P + + +A + I++ + IN K++ A D LT++ +R + Sbjct: 276 PMLRQIRLTLLINVAICFTVTFIVIILTQMTINRYQKRLEEMALTDKLTRIANRQAIDLH 335 Query: 162 -EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 + L + +V+L D+D FK IND +GH GD VL A + + D +V R Sbjct: 336 LQQLFKEQQRHQVPFSVILFDLDNFKQINDTHGHIAGDAVLQNIANIVTTELRDCDVVGR 395 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF V + D L AE IR ++ ++++TLY T S GV R Sbjct: 396 WGGEEFLVLLKHCQLDDALKRAESIRLAIQSYAIGFEEQTLYTTASFGVVEYR-----DQ 450 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTSTM 308 DD N L+ AD LY +K++G+NR + Sbjct: 451 DDHNTLLKRADQALYIAKQNGKNRCEVI 478 >UniRef50_B7R5U6 PAS fold family protein n=13 Tax=Thermoanaerobacterales RepID=B7R5U6_9THEO Length = 692 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 11/187 (5%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLD 181 I + ++ + + ++ D LT +Y+R + L+ + ++ ++++ D Sbjct: 514 AIGIIRDISERKRFEELLYRQSITDPLTNIYNRRFFMQMLEQEIERVKRNKKLFSLIMFD 573 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK++ND +GH GD VL A ++ + AR GGEEF + +P + + + Sbjct: 574 LDHFKNVNDRFGHAAGDMVLKSVADTVKGRIRKTDYFARWGGEEFIILLPETSLNNAAEL 633 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++RK + K +T S GV R TD + +++ D LY +K G Sbjct: 634 AEELRKKISETELDGIGK---VTASFGVTEYR-----NTDTVDTVLLRVDGALYEAKGSG 685 Query: 302 RNRTSTM 308 RN Sbjct: 686 RNCVKIA 692 >UniRef50_A1U2H0 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A1U2H0_MARAV Length = 630 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 132/328 (40%), Gaps = 33/328 (10%) Query: 10 FSTGVLIVPCMLT----LAIPGVLPRFKAEQMMPAIALIVSVI---------ASVVIGGA 56 + G+L + +L L +P +L F M ++++ + + V Sbjct: 293 MTAGMLALAGLLIPYQWLILPSILVAFVGCSTMLMLSVVRWIKKDPAARYYTVAWVFMLF 352 Query: 57 GSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF---- 112 G + L + + G + + + ++ F+ Q Sbjct: 353 GGIVLALSKFTMLPRNLLTENATQVGSALGVILLSIALADRLNREKKKSFAAQQKLLREE 412 Query: 113 ---------SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 S R+ A+ V + L +Q+ + D LT + +R + Sbjct: 413 RKARLAQEKSLRIQQEANALLEERVQERTRDLEILNEQLLELSATDPLTGLKNRGHFDKK 472 Query: 164 LKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVA 219 +S + + + L+++++DID+FK ND YGH GD L + A I++ V + L A Sbjct: 473 FQSDVVHAYRFEETLSLLIVDIDHFKGFNDTYGHLVGDDCLKMVADCIKQHVTRPQDLAA 532 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R GGEEF V +P +AE IR+ ++ F + L+LTVSIGV S + Sbjct: 533 RYGGEEFVVLLPDTPEAGACRVAELIREDIQKMAFRVSDQVLHLTVSIGVCS---CAPSQ 589 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRTST 307 D L AD LYR+K +GRNR Sbjct: 590 ADATKALFACADGALYRAKAEGRNRVVA 617 >UniRef50_B4U5K2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5K2_HYDS0 Length = 901 Score = 226 bits (576), Expect = 9e-58, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 99/191 (51%), Gaps = 14/191 (7%) Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLT 176 T+ +C + + I ++++++ D LT + +R L + L+ + + + L+ Sbjct: 721 TLILCILQDITEESMIIKYFEELSIK---DDLTGICNRRCLEDKLEEYLTLAKRYNRPLS 777 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 V++ DID+FK IND+YGH+ GDKVL A + + ++AR GGEEF + P Sbjct: 778 VIMFDIDFFKHINDSYGHDIGDKVLKTIANIVLSNIRATDILARYGGEEFVIISPETTLE 837 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 D +AEK+RK +E F ++ +T S GV S L D ++ D LY+ Sbjct: 838 DAKALAEKLRKEIENFLF---EEGFSITCSFGVTS-----LNQEDTKETILKRVDEALYK 889 Query: 297 SKKDGRNRTST 307 +K++GRNR Sbjct: 890 AKREGRNRVVA 900 >UniRef50_Q2BML0 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BML0_9GAMM Length = 577 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 132/307 (42%), Gaps = 22/307 (7%) Query: 16 IVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVI------------ASVVIG-GAGSLAFP 62 ++ + L +P PR + L+ I + IG +L Sbjct: 269 MLFARVFLELPSRFPRLNLSFNLLGGVLLFCGILFLLLDDVLSLLYTAFIGIVPFALLMI 328 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMA 122 + C L V + V+ A +V I + L A + Sbjct: 329 IAGACACLNGVKEARYFLGAAVFAMISAVITAFTVSGIVEYKAIGFHAVEYGMLIEAVLF 388 Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVML 179 + F + + Q AD D LT +Y+R G + ++ + + + L +++ Sbjct: 389 ALALAYQFRINQEEKVAAQ--QLADRDQLTGLYNRRGFDKVMEPVFGNAYRHHRELCLLV 446 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LDID+FK+IND +GH GD VL+ A+ +Q + L+AR GGEEF + +P N ++ + Sbjct: 447 LDIDHFKAINDRHGHGYGDLVLTDLAKVLQHELRAGDLIARWGGEEFLLLLPETNHMEAV 506 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE++ + + + + TVSIG+ + + F +L+VEAD LYR+K+ Sbjct: 507 TLAERLIRNISNREVEGDGVQEHYTVSIGIAELKPPIV----SFKQLLVEADKHLYRAKE 562 Query: 300 DGRNRTS 306 GRN+ Sbjct: 563 TGRNKAC 569 >UniRef50_B8KV43 Sensory box histidine kinase n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KV43_9GAMM Length = 494 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 7/195 (3%) Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQH 174 I+ IM ++ ++ +++ AD D LT +R L +KS + + + Sbjct: 296 ISGQFAGSIMFLKDISDRKAVERRLKAIADKDPLTGAGNRRALESVIKSELSRAHRHDEP 355 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L+V +LDID+FKS+NDNYGH GD+VL A+ + ++ AR+GGEEFA+ +P + Sbjct: 356 LSVAILDIDWFKSVNDNYGHLMGDRVLIDIAKLCKDLIRPYDTFARIGGEEFALLLPKTS 415 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 + +AE++R+ V + + +T+SIGV +++ AD L Sbjct: 416 VPEAERLAERLRQRVAEHTTQAGENRVQVTISIGVALLAKG----AKTLEEMIESADRAL 471 Query: 295 YRSKKDGRNRTSTMR 309 Y +K DGRNR T Sbjct: 472 YCAKLDGRNRVVTFE 486 >UniRef50_B9Z0Y0 Diguanylate cyclase n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z0Y0_9NEIS Length = 528 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 19/283 (6%) Query: 30 PRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVE 89 AE ++ L+++++A V+I G L L + ++ L VT + Sbjct: 248 RTAAAESRRLSLQLVIAIVAGVLI--YGWLTLWLGSNTVRHALRASELAILPGAVTTMLA 305 Query: 90 IVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFD 149 V F++ F G + V + ++A A D Sbjct: 306 TTWTFYWV--------FALIAAFVGFFGYRMFTYWLDSSTRLVNELAEANSKLAHLARTD 357 Query: 150 FLTQVYSRSGLYEALKSPSLKQTQHL---TVMLLDIDYFKSINDNYGHECGDKVLSVFAR 206 LT + +R L EAL+ + ++ +++LLDID+FK +ND YGH+ GD V+ + Sbjct: 358 TLTGLPNRRALEEALEQQLQRSRRNGEQASLVLLDIDHFKVVNDRYGHDAGDAVIRALGK 417 Query: 207 HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVS 266 + + + + + R GGEEF V + +V+ AE++R VE + + T+S Sbjct: 418 AMSETIRNVDVAGRWGGEEFLVVLANVDEEGAAAFAERLRTRVESSTVAHGELHVRYTIS 477 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 +GV + + AD LYR+K DGRNRT+ + Sbjct: 478 LGVAPLSTPHR------EAWLKRADEALYRAKLDGRNRTAIAQ 514 >UniRef50_C1D6I3 Diguanylate cyclase n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6I3_LARHH Length = 350 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 6/177 (3%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHE 195 +++ D LT +Y+R + L+ + + +H L ++LD D+FK IND +GH+ Sbjct: 173 RERLKWLGLTDPLTGLYNRRYFEQRLQEEAQRTRRHGDPLACLMLDADHFKRINDTWGHQ 232 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD VL V AR +++ + + AR+GGEEFAV +PS L+AE+IR + +P Sbjct: 233 AGDVVLKVLARRVRQQLRGCDVAARIGGEEFAVLLPSTPVRHVQLVAERIRLAIAGEPVH 292 Query: 256 WQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 L ++VS+G + +LM AD LY++K++GRNRT G Sbjct: 293 VSPDCVLQVSVSLGAAMLAPGAADI--SPERLMARADAALYQAKRNGRNRTMLAAAG 347 >UniRef50_C1TNC9 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNC9_9BACT Length = 494 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 13/236 (5%) Query: 76 QVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAI 135 T ++ + E + ++D+ S + +++ + I Sbjct: 269 PYTRMVGALVDYSERKTDLDGLLDVMSEISSGASDEIS--YICEALKDMILVLKDKMENI 326 Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNY 192 S ++ A+ D LT +++R + + L S + + +++ L+V+++DID+FK++NDN+ Sbjct: 327 QSYSDRLEYLANRDSLTGLWNRRKMDQILLSETERSSRYGSSLSVVMVDIDHFKNVNDNF 386 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GHE GD VLS A ++ V R GGEEF V +P + L AE++R VE Sbjct: 387 GHEVGDTVLSSIAALMKNCTRAGDSVGRWGGEEFLVVLPETDVKGALEYAERMRSAVEDN 446 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 F + +T S GV R+ N+ + AD LY +K+ GRNR Sbjct: 447 VFHDD---IRITSSFGVTQYRSGEP-----VNEFVARADEALYDAKEKGRNRVEIC 494 >UniRef50_Q0A8G7 Diguanylate cyclase n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8G7_ALHEH Length = 237 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 11/183 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDIDYFKS 187 + +++ A D LT + +R L + + + V++ D+D+FK Sbjct: 57 DITERKRDQERIRYLATTDALTGIMNRGEFTRHLTKEIERAARFNRPVAVVMYDLDHFKR 116 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH+ GD+VL + + + AR GGEEF + +P + + AE++R Sbjct: 117 VNDTYGHDAGDEVLKTAVAQVNNAIRRVDVHARWGGEEFILLLPETDLAAAVKSAERLRA 176 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + PF + +T S GV + L D F+ L+ AD LY +K GRNR Sbjct: 177 AIAEHPFK---QPERVTASFGVTT-----LGPRDRFDVLIKRADDALYLAKHAGRNRVEA 228 Query: 308 MRY 310 + Sbjct: 229 LSP 231 >UniRef50_Q2IXE2 Response regulator receiver modulated diguanylate cyclase n=6 Tax=Alphaproteobacteria RepID=Q2IXE2_RHOP2 Length = 457 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 95/170 (55%), Gaps = 9/170 (5%) Query: 144 LRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 A D LT +++R + L + + + + + L +M+LDID+FK+IND YGH+ GD V Sbjct: 290 EMAITDGLTGLHNRRYMESHLATLAEQAGSRGKPLALMILDIDFFKAINDTYGHDAGDDV 349 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ-- 258 L FA I+K + L R GGEEF + +P + ++AE++R+ + +PF ++ Sbjct: 350 LREFAVRIKKSIRGIDLACRYGGEEFVIVMPETDLQVAQMVAERLRRAIAGEPFAIEKGT 409 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 K + +T+SIG+ + + L+ ADT LYR+K DGRNR Sbjct: 410 KRIAVTISIGLSTLE----RKGEAVRDLLKRADTALYRAKHDGRNRVVAA 455 >UniRef50_B7WUF6 Diguanylate cyclase n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WUF6_COMTE Length = 373 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 20/209 (9%) Query: 116 LGIATMAICPIMV------SFSVAAINSLMKQVALR-------ADFDFLTQVYSRSGLYE 162 L + ++A C +V S ++ ++ L +++ ++ A D LT V +R E Sbjct: 158 LALTSLAFCAFVVRATRELSRALQSLLRLRRELEIQHSIASNAARTDDLTGVNNRRAFNE 217 Query: 163 ALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 + + + + L +L DID+FK IND +GH GDKVL R I+ + + L Sbjct: 218 KAETMFAYTRRYGVPLCALLFDIDHFKQINDTHGHAAGDKVLQAVVRQIKSALREADLCG 277 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R+GGEEF V + N + + +AE+IR V+ TL +T+S+GV ++ Sbjct: 278 RLGGEEFGVLLAGTNMQEAVQIAERIRLAVQAIKEPVNDTTLQVTISVGVAEADSACA-- 335 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 D + L+ +AD +YR+K +GRN+ + Sbjct: 336 --DVSTLLKQADAAMYRAKSNGRNQVHSC 362 >UniRef50_Q21KC2 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21KC2_SACD2 Length = 234 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 6/185 (3%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSI 188 + + S + ++ + + D LT +Y+R E++ + + Q ++ L+D+D+FK + Sbjct: 35 IQQLESRIAELTEQVNTDSLTGLYNRKHFNESIAQELERTQRSRQPTSLALIDLDHFKVV 94 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND +GH GD+VL A+ I + + R GGEE AV PS + +AE++R+ Sbjct: 95 NDTHGHIAGDEVLKAVAKAIGNTIRKLDIACRYGGEEIAVIFPSTYQLVASQVAERLRQA 154 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 +E T+ +T SIGV + A F + D LY +K GRNR +T Sbjct: 155 IENCTVNHGGSTIPITASIGVDTYTAQSKETAVQF---IERVDQLLYDAKHLGRNRVATR 211 Query: 309 RYGEE 313 + E Sbjct: 212 TFSSE 216 >UniRef50_B4RZE8 GGDEF domain protein n=2 Tax=Alteromonadales RepID=B4RZE8_ALTMD Length = 325 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 7/181 (3%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDN 191 + L +++ + D LT +++R E +++ + T ++LDID+FK IND Sbjct: 148 MEHLNQELKTASRVDGLTGLFNRRYWQERFDEMYKLCVRRDKPSTAVMLDIDHFKRINDT 207 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GDKV+ + A I++ V + L R GGEEFA+ + D ++AE+IR+ + Sbjct: 208 YGHQAGDKVIKMLAALIKRCVRETDLAGRYGGEEFAIILNDSTVEDARIVAERIRQLAQR 267 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 + +++ TVS+G+ +++ + AD LY +K+ GRN+ Sbjct: 268 LVVEHEGESINFTVSLGLAQFCSAFKGPL----AWLECADKALYDAKESGRNQYRVYDTS 323 Query: 312 E 312 + Sbjct: 324 Q 324 >UniRef50_B0C0K6 Diguanylate cyclase (GGDEF) domain protein n=3 Tax=Acaryochloris marina MBIC11017 RepID=B0C0K6_ACAM1 Length = 449 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 8/188 (4%) Query: 129 SFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYF 185 + + + + A D LT+VY+R L + + ++++++DID+F Sbjct: 249 NLMANQLEQSQQDLYRLATLDGLTEVYNRREFNRWLLVEIERSQRGEHPVSLIMVDIDHF 308 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K +ND YGH+ GD L A+ +Q+ V +V R GGEEF V +P D ++AE+I Sbjct: 309 KRLNDTYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFGVILPKATSADSWVIAERI 368 Query: 246 RKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 R + + + + +T S+GV + Y D +L+ +AD LY +K GRNR Sbjct: 369 RLAIAEKSVVLPSQQHIDMTASLGVAT----YPDHADCKERLVKQADQALYTAKYQGRNR 424 Query: 305 TSTMRYGE 312 + E Sbjct: 425 VHSAEVNE 432 >UniRef50_B6ESF0 Membrane associated GGDEF protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESF0_ALISL Length = 712 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 14/222 (6%) Query: 89 EIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADF 148 E + N+ + + SPF + ++F LG+ I ++ + + ++ + + Sbjct: 501 ETNTLINNWLSVKYTSPFDV-KLFKVLLGVIVAIIGALL--YRQKLLKKYNTKLIQLSTY 557 Query: 149 DFLTQVYSRSGLYEAL---KSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT +Y+R + L + SL+ L+V++ DIDYFK IND +GH GD+V+ + Sbjct: 558 DSLTSLYNRRVIDTHLVKQQKLSLRTDMPLSVIMCDIDYFKKINDTFGHIAGDEVIVNMS 617 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + + +V R GGEEF + P+ + ++AE +RK +E P T +Q +T+ Sbjct: 618 ALLLNNIRTSDIVGRWGGEEFIIICPNTHSSGAKVLAECLRKKIEKMPATNEQ---TITM 674 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 S G+ + + +L+++AD LY +K+ GRN+ Sbjct: 675 SFGIAQFNENL-----SYEELLIKADAALYAAKEQGRNKVVI 711 >UniRef50_Q1DC46 FHA domain/GGDEF domain protein n=2 Tax=Myxococcales RepID=Q1DC46_MYXXD Length = 354 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 7/160 (4%) Query: 149 DFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT + ++ E L+ S + + LT+M+ DID+FK IND +GH GD VL A Sbjct: 197 DGLTGINNKRYFLEYLEKEMGRSTRYQRTLTLMMFDIDHFKQINDVHGHLAGDYVLRELA 256 Query: 206 RHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTV 265 + I+++V + AR GGEEFAV +P P L AEKIR+ +E + F + K + +T+ Sbjct: 257 QSIKRLVRREQCFARYGGEEFAVVLPEDGPDKARLFAEKIRRLIEGKSFVYDDKEIPVTI 316 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 SIGV + L T + AD LY++KK GRNR Sbjct: 317 SIGVAEQTSDMLEPT----HFIKVADANLYKAKKSGRNRV 352 >UniRef50_A8UY33 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY33_9AQUI Length = 345 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 7/178 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKS 187 + + +++V A+ D LT + +R AL K +V+++D+D FK Sbjct: 170 EIERLREELRRVKEEANIDPLTGLRNRRSFERALSEFFRDFKKFGYPFSVIMIDLDNFKQ 229 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH GDKVL ++ + K + AR GGEEF + +P + + L++AE++RK Sbjct: 230 INDTYGHLAGDKVLKEIGNILRNYLRAKDVPARTGGEEFTIILPGITREEALMVAERLRK 289 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 + + K + T S GV + L+ AD LY++K+ G+N Sbjct: 290 VIANYTVEHEDKKINPTASFGVAEVN----EQVETPEDLLRLADENLYKAKRRGKNTV 343 >UniRef50_UPI0000E11028 response regulator receiver modulated diguanylate cyclase n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E11028 Length = 323 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 14/236 (5%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 LLT + IV ++ D + SPF+ ++ A+L IAT + + S S Sbjct: 88 IVLLTDGVESKLIVDGLHAGADDFLASPFN-KELVEAKL-IATNRLFGLRKSHS-----E 140 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGH 194 Q+ + D LT + +R + LK + + + + + D+D+FK+IND GH Sbjct: 141 QYNQLQKESLTDVLTGISNRRHFKDILKKEMVKAQRHDRAMCIAYFDLDHFKAINDGLGH 200 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD+VL + I + + + R+GGEEF + +P + + L+ +E+ R +E Sbjct: 201 DAGDEVLRKVSSAISETLRAEDSFGRLGGEEFCICMPDTSLNEALIPSERYRLMIEKLTI 260 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 + K + +T S GV + D N L+ AD LY+SK GRN+ + + Y Sbjct: 261 EYNNKPINVTASFGVTEFKP----FLHDINSLLAHADEALYKSKHQGRNQVTLLPY 312 >UniRef50_Q31GI5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31GI5_THICR Length = 532 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 98/205 (47%), Gaps = 14/205 (6%) Query: 108 IPQMFSARLGI--ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK 165 I + F L I + I ++V F + + + A D LT + +RS AL Sbjct: 332 ITENFLQHLLINEFLLLIISLLVFFFIRNQIRQRRLLHKMAKTDNLTGLPNRSIFKRALN 391 Query: 166 SPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMG 222 + + L+++ DID+FK IND YGH GDKVL AR+I+ + K + AR G Sbjct: 392 ENIKRSNKKQWPLSLIFFDIDHFKKINDTYGHLVGDKVLKKVARNIEDGLTHKDIFARWG 451 Query: 223 GEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD 282 GEEF + +P+ + D +AE++R+ +E + +T S GV R D Sbjct: 452 GEEFVILLPNTDLQDAEKVAERLRQKLEAMT----DFDITITSSFGVSDLRPD-----DT 502 Query: 283 FNKLMVEADTCLYRSKKDGRNRTST 307 M D LYRSK+ GRNR + Sbjct: 503 AESFMQRGDEMLYRSKEQGRNRVTA 527 >UniRef50_B0TJ24 Periplasmic/7TM domain sensor diguanylate cyclase n=4 Tax=Shewanella RepID=B0TJ24_SHEHH Length = 623 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 28/322 (8%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIG--------------G 55 + ++++ L A G + L + ++ +G G Sbjct: 312 MLSCIMLMYMSLAQAFKGNKLAKLFAIGWAGMMLGALLSGAIYLGLLHWDLQAKTPFILG 371 Query: 56 AGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR 115 + AL+ A+RY + L A+ A + ++ + + Sbjct: 372 LSIEVIFMAALL--AIRYNDERLAKLQIQQDALLQAKKAEETKEEALHIEARSSEKLAKM 429 Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQT 172 + T+ + ++ +N +++ + D LT V +R+ + + S +Q Sbjct: 430 VQERTLEL-----EIALRELNEANQKLTEQTRIDSLTGVKNRASFDRRILAEGRISRRQQ 484 Query: 173 QHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVP 231 L++++LDID FK IND+YGH GD+ L V A +++I+ LV+R GGEEFA+ +P Sbjct: 485 APLSILMLDIDRFKLINDSYGHLAGDQALRVIADQLKQILKRPTDLVSRFGGEEFAIILP 544 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + + + +AE IRK + P W + LTVSIGV S +T + L+ +AD Sbjct: 545 NTDKIGAQQVAETIRKVISKLPICWGGNRIRLTVSIGVSS---EIITSEEHTTLLLEQAD 601 Query: 292 TCLYRSKKDGRNRTSTMRYGEE 313 LY++K DGRN+ ++ Sbjct: 602 KALYQAKNDGRNQVKLYSPDQD 623 >UniRef50_B9QV28 GGDEF domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QV28_9RHOB Length = 273 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 7/186 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKS 187 V A L +Q ++A D LTQV++R E +++ L+V LLDID+FKS Sbjct: 77 EVKARAELAEQFRMQAITDGLTQVFNRGHFLELCNHELKARSRTEAPLSVALLDIDHFKS 136 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND YGH GD+ L V AR ++ + +V R GGEEF++ +P N + +A+++RK Sbjct: 137 VNDTYGHAAGDEALRVVARTLENSLRQSDVVCRWGGEEFSLLMPRTNSENASGLADRLRK 196 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSG----RASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 + + LT S GV + A T D + L +AD LY++K GRN Sbjct: 197 TLSEIVIKEGGTSFSLTASFGVATMAGPNPACKATGADAIDLLFKDADDALYKAKDAGRN 256 Query: 304 RTSTMR 309 + T Sbjct: 257 KVITAE 262 >UniRef50_D2L986 Diguanylate cyclase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L986_9DELT Length = 530 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 16/260 (6%) Query: 51 VVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQ 110 VV+G ++ P ++ + L + D+ P I + Sbjct: 280 VVLGTLATIVLATPLVLRLCRNLERPLEILTGYARSLRAKGYDTTCPPDLGGPMPREIAE 339 Query: 111 MFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSP 167 +F A +A + +++ + D LT +Y+R L+ L Sbjct: 340 LFEAFCAMA-------------GEVRGHIEETERLSVLDALTGLYNRRFLFSGGAKLLDA 386 Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 S + + T ++LD+D+FK+IND++GH GD+VL+ A I V LVAR GGEEFA Sbjct: 387 SARAGRPCTCLMLDLDHFKAINDSHGHRTGDQVLAHVAGRIAGAVRRSDLVARYGGEEFA 446 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 V + + G +AE+IR+ + P L +TVSIGV R + L+ Sbjct: 447 VLLTGSDRQHGAELAERIRQALADAPCQVGDAYLPVTVSIGVAETRERVQFGESALDDLL 506 Query: 288 VEADTCLYRSKKDGRNRTST 307 AD LY +K GR+R + Sbjct: 507 ARADKALYAAKAAGRDRVAA 526 >UniRef50_A9WGU1 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A9WGU1_CHLAA Length = 324 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 65/281 (23%), Positives = 119/281 (42%), Gaps = 7/281 (2%) Query: 28 VLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGA 87 V P + + AI I + + I + + + ++ + Sbjct: 45 VRPVTQGTAALTAIRTIRPDLVLLDIRMPDMDGYEVCQQLKADEETAQIPVIFISALDDV 104 Query: 88 VEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRAD 147 + V + PF ++ + +A + + + + + A A Sbjct: 105 EDKVRAFECGGVDYIAKPFQPLEVLARVRTHLALAQARKALEAANRELQRALAREAELAR 164 Query: 148 FDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D+LT VY+RS YE + + + + LT+ +LD+D+FK IND YGH GD+VL Sbjct: 165 MDWLTGVYNRSHFYELARHEFAIATRYERPLTMCMLDVDHFKQINDRYGHLVGDQVLRAV 224 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ + + + R GGEEF + +P+ N L +AE++R + + + T Sbjct: 225 AQTVAHQIRTADSIGRFGGEEFILLLPNTNLPSALTLAERLRVTIADLQVHTDRGIVTAT 284 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +S+GV +++ T +L+ AD LY +K+ GRN Sbjct: 285 ISVGVAERQSTDTT----IERLIDRADRALYAAKRQGRNCV 321 >UniRef50_Q2W7A4 Response regulator n=4 Tax=Proteobacteria RepID=Q2W7A4_MAGSA Length = 634 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 9/186 (4%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLLDIDYFKSI 188 V LM+ + + D +T + +R L E L + ++ LTVM+LD+D+FK + Sbjct: 448 VLETKRLMETLRESSLSDPMTGLNNRRFLEEYVDTLVANVHRRKSALTVMMLDLDHFKMV 507 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND YGH+ GD VL ++ +++ V LV R GGEEF + + + +AEKIR Sbjct: 508 NDTYGHDAGDAVLKALSKVLRQAVRASDLVIRFGGEEFLIVLVDTPSAEADQVAEKIRAL 567 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 VE T+ T+SIG+ + T +D F + + AD LY++K++GRNR + Sbjct: 568 VEALVVQTGTVTIRKTISIGLS----DFPTDSDTFWQAVKFADVALYQAKENGRNRV--V 621 Query: 309 RYGEEV 314 R+ E + Sbjct: 622 RFNESM 627 >UniRef50_B8KJJ5 GGDEF domain protein n=2 Tax=unclassified Gammaproteobacteria RepID=B8KJJ5_9GAMM Length = 540 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 70/268 (26%), Positives = 118/268 (44%), Gaps = 25/268 (9%) Query: 56 AGSLAFPLPALIWCAVRYTPQV---TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 L +P +W T + + + E +V +V +G F+ + F Sbjct: 269 VLILLLSVPVFLWTLSSVTSPLKNLAAIFRRLAAGSEESVVDAAVTKDEIGDLFNAAEAF 328 Query: 113 SARLGIATMAICP----------IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE 162 R I + V+ + + +++ A D LT ++R L + Sbjct: 329 R-RENIRERELLADYRELSRTLEAKVTQRTRELEAKNEELDHLASVDKLTDTFNRRALDK 387 Query: 163 ALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 AL + + + + L+++L+DID FK +ND YGH GDKVL ++ I++ + ++ Sbjct: 388 ALLAELERADRYQRPLSILLMDIDLFKQVNDEYGHLTGDKVLVTLSQTIRENLRASDILG 447 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R GGEEF V P + +AEK+R+ +E F + +T+SIG+ L Sbjct: 448 RWGGEEFLVICPETDLEQARNVAEKVRQAIEGTDFELGK---TITISIGLS-----VLIE 499 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRTST 307 L+ EAD LY++K GRNR T Sbjct: 500 GTSAESLVAEADKALYQAKSQGRNRVCT 527 >UniRef50_D1U463 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U463_9DELT Length = 974 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 7/183 (3%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDY 184 V + L +++ A D LT +R + E +++ L V++LDIDY Sbjct: 795 VIHDITERVRLEREMKRLATTDSLTGAANRHEFFRLAELELRRAMRYGHSLAVLMLDIDY 854 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FKSIND +GH+ GD VL + ++ + D + R+GGEEFA +P + G+L+A++ Sbjct: 855 FKSINDTHGHQTGDAVLKALSALVRTTLRDTDIFGRLGGEEFAAVLPETDLAGGVLVADR 914 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +R+ + + + TVSIG+ R S + + AD +Y++K+ GRNR Sbjct: 915 LRRELGALKVRLRDIEVMFTVSIGLTETRKSERL----IDDAINRADEAMYKAKRMGRNR 970 Query: 305 TST 307 + Sbjct: 971 VES 973 >UniRef50_C9NRL0 Putative virulence-mediating protein VirC n=2 Tax=Vibrio RepID=C9NRL0_9VIBR Length = 634 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 109 PQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL-KSP 167 Q L I +V + + + K++ + D LT + +R + L +S Sbjct: 432 SQRTREILFITLFFALAYLVIRRLWKMKRITKELESQNTTDPLTGLANRRYIENWLSQSD 491 Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 +++Q + + ++DID+FK ND +GH+ GD VL A ++ ++AR GGEEF Sbjct: 492 NVQQHKSYALSVIDIDHFKQFNDTHGHDVGDTVLKATANQLKNNTRSHDIIARWGGEEFV 551 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + +P N E++RK VE + +L +T+S+G + Y + D++++ Sbjct: 552 MIIPIDNVHTVEETLERLRKSVESHKIHIDEDSLAVTISVG--TQLCHYQDIETDWDRVF 609 Query: 288 VEADTCLYRSKKDGRNRTSTMRYGE 312 +AD LY++K+ GRN+ T Y + Sbjct: 610 RKADKALYQAKQSGRNKCITFHYQD 634 >UniRef50_A9B3D1 Diguanylate cyclase n=2 Tax=Bacteria RepID=A9B3D1_HERA2 Length = 1774 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 7/191 (3%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHL 175 A + + + A L QV A D LTQV +R +E + + L Sbjct: 1586 AELGMVFASQAAIAIANAQLFGQVQRLAITDSLTQVSNRRHFFELAERQWILTCSSDHPL 1645 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 + M+LD+D+FK +ND+YGH GD VL A + + L+ R GGEEFA+ +P + Sbjct: 1646 SAMMLDVDHFKRVNDSYGHSVGDLVLRTVADLCRANLRPSDLLGRYGGEEFAILLPDTDV 1705 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 L +AE++R + +Q ++ LTVSIGV + L+ AD LY Sbjct: 1706 SAALTIAERLRVAIANHVINHEQASINLTVSIGVTGLS----KDDNSVASLLDRADRGLY 1761 Query: 296 RSKKDGRNRTS 306 +K+ GR+R + Sbjct: 1762 IAKETGRDRVT 1772 >UniRef50_A6VUN1 Diguanylate cyclase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUN1_MARMS Length = 345 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 21/305 (6%) Query: 20 MLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVI--------GGAGS-LAFPLPALIWCA 70 +L LAI L + PA +++S++ +++I GG S +A+ LP A Sbjct: 47 LLDLAIVTSLYIVVRFNIFPASEIMLSLVVAIIIIIPSFALSGGVNSQVAYLLPLYPVMA 106 Query: 71 VR---YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIM 127 Y + + G + + + + DI+ + ++ + Sbjct: 107 ALIGGYRESLIITIILTIGVILSTVFSQHITDITGAIYSDQKSIDRGFWLTTSIIFSGVF 166 Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDY 184 F + L +Q+ D LT +++R GL + + L+++L+DIDY Sbjct: 167 GRFFLKRYTELTQQLKNENIQDPLTGLFNRRGLNLHFTKELDSADTTSSPLSLILIDIDY 226 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK IND YGH+ GD L A + + + ++AR GGEEF + +P+ + + +AEK Sbjct: 227 FKKINDMYGHDIGDVCLIEIANTLSQAIRKNDIIARFGGEEFIIILPNTPKNETVAIAEK 286 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 ++ + Q F+ +L +T G Y D+ K++ AD LYR K GRN Sbjct: 287 LKVLISNQKFSSFNLSLTIT------QGLTEYNKNNDNALKMIKRADKALYRGKDKGRNC 340 Query: 305 TSTMR 309 Sbjct: 341 VELSE 345 >UniRef50_B6BII0 GGDEF domain/pas/pac sensor domain protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BII0_9PROT Length = 662 Score = 224 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 11/183 (6%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDI 182 + S + + ++ A D LT +Y+R E ++ + + + + +++ DI Sbjct: 485 VATSQDITERIEMENKLQKLATIDSLTGIYNRHKTNEEIEIQLAKAKRYDEEFALVMFDI 544 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK +ND YGH+ GD +L F+ + K + + R GGEEF + +P V+ + + +A Sbjct: 545 DHFKDVNDTYGHDAGDDILKEFSDVVLKHIRESDRFGRWGGEEFMLLLPKVDKDEAIRVA 604 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 +KIR+ V PF K +TVS+G R D L+ D LY++K GR Sbjct: 605 DKIREFVSRYPF---NKLSRITVSVGASIYR-----ENDTKESLLKRTDEALYQAKSSGR 656 Query: 303 NRT 305 NR Sbjct: 657 NRV 659 >UniRef50_Q21NS3 Diguanylate cyclase n=5 Tax=Alteromonadales RepID=Q21NS3_SACD2 Length = 319 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 12/189 (6%) Query: 123 ICPIMVSFSVAAINSLM-----KQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQH 174 IC I+ + A+N L Q+ + D LT + +R E + Sbjct: 128 ICLIVYDVTEVAVNRLQIQAANLQLHEISRTDGLTGLLNRKTWELDAEQEYKRFKRHEHP 187 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 ++++ DID+FK+IND+YGH GD+V+ A ++ + D + R GGEEF + + + Sbjct: 188 CSLVMFDIDHFKNINDSYGHPAGDEVIRQTAAAVKSCIRDIDIAGRYGGEEFTIVLSDTD 247 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 L++AE+IR ++ ++ + TVS+GV T + AD L Sbjct: 248 TEGALVVAERIRNQIQELTVHYEDFAIQFTVSLGVAQLTQQMTNRT----AWIDCADKAL 303 Query: 295 YRSKKDGRN 303 Y++KK+GRN Sbjct: 304 YQAKKNGRN 312 >UniRef50_A6LYL1 Diguanylate cyclase n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYL1_CLOB8 Length = 568 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 79/314 (25%), Positives = 138/314 (43%), Gaps = 22/314 (7%) Query: 11 STGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCA 70 ST VL + L I +P + + L++S+ S +I + +I Sbjct: 260 STWVLFIYSYLD--IKKHMPILNNFFKLSILFLVLSLYISKIIPDGFTYDILYLQMILVG 317 Query: 71 VRYTPQVTCLLTFVTGA----VEIVLVANSVIDISVGSPFSIP---QMFSARLGIATMA- 122 + + F G+ V I ++ I +GS + FS A++ Sbjct: 318 LYILISIYSYFKFGMGSIYYLVGIFILFTGFIIYILGSYGLLEWNIFAFSTCYPAASIET 377 Query: 123 -ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVM 178 + I + + + ++ L D LT +Y+R E + + L+ + ++++ Sbjct: 378 LLFTIGIIKQIKHEKEVNTKLQLEVITDKLTNIYNRRYFEETVVNKILQLEKEKSLVSML 437 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +LDID+FK +ND YGH GD VLS A I++ + + ++ R GGEEF +P + + Sbjct: 438 VLDIDHFKKVNDTYGHSTGDLVLSETAMIIKQCLRKEDILVRWGGEEFVAVLPFTDSKES 497 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 ++AE IR +E F + K +TVSIG+ + +DF+ AD LY +K Sbjct: 498 TIIAETIRLSIENHKFKFVNK---ITVSIGIAE-----KDVVEDFHSWFRRADNALYNAK 549 Query: 299 KDGRNRTSTMRYGE 312 ++GRN E Sbjct: 550 ENGRNTVCICYTNE 563 >UniRef50_A3WMD3 Phytochrome sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Idiomarina baltica OS145 RepID=A3WMD3_9GAMM Length = 689 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 11/177 (6%) Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSIND 190 + +++ D LTQV++R + + L+ + + L V+LLDID+FK +ND Sbjct: 517 ELTEANQRLEHLVHTDALTQVWNRYHMEQTLEEEVKRCKRHGRDLAVILLDIDHFKRVND 576 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 +YGH+ GDKVL + + I + + + R GGEEF + P + +AE++R+ + Sbjct: 577 DYGHDVGDKVLKLISEAIHQWLRSSDVFGRWGGEEFLIIAPETDLESANQLAERLRRRLS 636 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 F K +T S GV S +D N L+ AD LY+ K+ GRN Sbjct: 637 NLQF---DKVGQVTASFGVAELLPS-----EDRNSLVKRADNALYQVKESGRNSVEV 685 >UniRef50_A4VQF4 GGDEF domain protein n=3 Tax=Proteobacteria RepID=A4VQF4_PSEU5 Length = 466 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 14/227 (6%) Query: 83 FVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQV 142 VE+ +AN I V S + + + M + + F + + L Q+ Sbjct: 242 ATITPVELHQIANRHAPILVESGTDYRLLMQVVVVFSAMLLTSL---FWIRRLRRLNDQL 298 Query: 143 ALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDK 199 +++ D LT + +R+ L + + + L++++LDID+FK IND++GH+ GD+ Sbjct: 299 RIKSQTDSLTGLANRAALDRRFATALEQARRYRRPLSIVMLDIDHFKRINDDFGHQMGDR 358 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 VL FA + + V R GGEEF V P + + AE++ + PF Sbjct: 359 VLRDFAALLDDCLRGSDAVGRWGGEEFLVLCPETSGPQAVQFAERLCEQARAFPFATG-- 416 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + T+S GV S D + L+ AD LYR+K +GR+R Sbjct: 417 -VSQTLSAGVAELSPS-----DTPDSLLRRADAALYRAKHEGRDRVC 457 >UniRef50_C6CQG0 Diguanylate cyclase n=7 Tax=Enterobacteriaceae RepID=C6CQG0_DICZE Length = 491 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 15/239 (6%) Query: 74 TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVA 133 + + G +V ++ D + S S + +A + + + + Sbjct: 265 NIFLNTRIIPEFGWKLMVEQNSTPHDRQLWSTLLKNTGISITVSVAMLLLIWLTIG---- 320 Query: 134 AINSLMKQVALRADFDFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 + +++ L A D LT + +R + L+ Q + +++L+D+DYFK IND Sbjct: 321 ---AYQRRLELMATTDKLTGLMNRQAFEYVFRTLRIKQSTQHRTFSIILIDLDYFKKIND 377 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD+VL AR IQ+ + R GGEEF + + + +AEKIR+ + Sbjct: 378 QYGHHVGDRVLVRTARLIQRTIRKTDSACRWGGEEFVLLLADCSRSQAHFIAEKIRRAIR 437 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + Q + + LT+S G+ + + L+ AD LY++K+ GR++ Sbjct: 438 FALVSHQHQVINLTISCGIAESHP-----GESIDHLVQRADNALYQAKRQGRDQAVIAE 491 >UniRef50_C0QLY1 Two domain sensory box histidine kinase (PAS/PAC domain/GGDEF domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY1_DESAH Length = 440 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 8/197 (4%) Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ 171 FS L I+ I + + ++ K++ A D LT +R + + Sbjct: 244 FSRSLDISGKFSNAIAIIEDITKRKTMEKELEKLATTDPLTGAKNRRSFLNLFEKEMKRS 303 Query: 172 TQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 ++ L ++++DID+FK INDN+GHE GDK+L++ ++ D + AR GGEEF + Sbjct: 304 KRYNYTLALVMIDIDHFKKINDNFGHETGDKILNLLVAKCHSVLRDSDIFARWGGEEFII 363 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLM 287 +P + + AE++R + T + TVSIG + ++++ Sbjct: 364 LLPETDLLQASSAAERLRGALAQSELRTNDGTNINFTVSIGFTIFGNKNIL----IDEII 419 Query: 288 VEADTCLYRSKKDGRNR 304 +AD LY +KK GRNR Sbjct: 420 KKADKALYLAKKQGRNR 436 >UniRef50_B7IH39 Diguanylate cyclase n=2 Tax=Bacteria RepID=B7IH39_THEAB Length = 167 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 11/173 (6%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYG 193 L K++ ++ D LT +Y+R + E ++ + + +++++DID FK IND YG Sbjct: 2 ELNKKLKYLSERDQLTDLYNRHKMNEEIRKHYYNFKRYGRPFSLLMVDIDKFKKINDTYG 61 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL A+ + K + + +R GEEF + + + + +AEKIRK +E + Sbjct: 62 HMVGDEVLKKLAKILVKNIRKTDIASRWVGEEFLILLSETDLEQAIEVAEKIRKTIEKES 121 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 F K + +TVSIGV + + L++ D LY++K+ GRNR Sbjct: 122 FP---KDIRITVSIGV-----DSVENHEHIKDLLILVDEKLYKAKESGRNRVE 166 >UniRef50_Q1JXC4 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXC4_DESAC Length = 637 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 11/197 (5%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLL 180 I S SV LM + + D +T +++R L + L + +L++ +++ +++ Sbjct: 444 AYIKQSLSVLEAKRLMNTLRESSLRDPMTGLFNRRFLQDQAGHLIAGTLRRKKNIGLLMC 503 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK +ND YGH+ GD+VL + IQK V + +V R GGEEF V + + D + Sbjct: 504 DIDFFKQVNDQYGHDAGDQVLKETSAIIQKSVRESDVVVRFGGEEFLVILTDIEAGDAMS 563 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AEKIR +E + F + + T+S+GV Y ++ F + + AD LYR+K+ Sbjct: 564 VAEKIRSNIEDKVFMVGPEKIRKTISLGVSE----YPGDSEGFWQSIKYADVALYRAKET 619 Query: 301 GRNRT----STMRYGEE 313 GRNR +M EE Sbjct: 620 GRNRALRFEESMWTAEE 636 >UniRef50_C6NZM9 Diguanylate cyclase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZM9_9PROT Length = 379 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 6/195 (3%) Query: 119 ATMAICPIMVSFSVAAINSLM-KQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQH 174 +T I + FS+ NSL +++ L D LT +Y+R L + + + Sbjct: 162 STDFIERLANIFSICLENSLNHERLKLVGLTDPLTGIYNRRYLETRCQEEAAHVRRYRSP 221 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L+ M LDID FK IND++GH GDK+L I+ + ++AR GGEEF V +P Sbjct: 222 LSCMFLDIDKFKRINDSFGHNIGDKILCSVTAQIKSQLRSNDVLARYGGEEFVVLLPQTG 281 Query: 235 PVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDF-NKLMVEADT 292 +AE+IR+ V Q F ++ L +T+SIGV ++L+ AD Sbjct: 282 IRGACDIAERIRRTVAEQAFQIGREDELKVTISIGVAQAPVDADGDERTVAHQLLAAADE 341 Query: 293 CLYRSKKDGRNRTST 307 LY +K+ GRN+ + Sbjct: 342 ALYLAKESGRNKVVS 356 >UniRef50_A6CY69 Putative GGDEF family protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CY69_9VIBR Length = 244 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 6/182 (3%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFK 186 ++ +++ + L ++ +++ D LTQ+ +R + L + K T ++L+DIDYFK Sbjct: 68 WLTRNISKRHRLELKLRKQSESDPLTQIANRRYFFSTLAT-ITKSTTPHCLLLMDIDYFK 126 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +ND YGH GD L IQ I+ AR+GGEEFA+ +P + +AE+IR Sbjct: 127 KVNDTYGHLAGDNTLKEVVARIQDIIRPDDTFARVGGEEFALLLPDIEEHTAYEIAERIR 186 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + PF ++Q+T +T+S+G+ R N + AD LY +K GRN++ Sbjct: 187 CTIADTPFHYEQQTFSITLSVGITQARYQERN-----NHIFSRADDALYIAKSRGRNQSM 241 Query: 307 TM 308 + Sbjct: 242 VL 243 >UniRef50_B8JB86 Diguanylate cyclase n=4 Tax=Anaeromyxobacter RepID=B8JB86_ANAD2 Length = 764 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 7/189 (3%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVML 179 + M + L Q A D LT + + E L + + + + +++L Sbjct: 569 LVISMHAAQSIDRARLFDQTERLATTDGLTGLTNHRTFQERLDAHLGQAQRYGKRTSLLL 628 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 DID+FKS+ND YGH GD+VL AR + + +VAR GGEEFA+ +P + + Sbjct: 629 CDIDHFKSVNDTYGHPVGDQVLRGVARTLARAARGTDVVARYGGEEFAIVMPETDTGGAM 688 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 ++AE+IR+ V F +Q L +T+S+GV + + L+ AD CLY +K+ Sbjct: 689 VIAERIREKVGQLVFETEQGPLKVTLSLGVAT----FPDDGAQKPALIERADACLYHAKR 744 Query: 300 DGRNRTSTM 308 GRN++ + Sbjct: 745 HGRNQSVSA 753 >UniRef50_C5T761 Diguanylate cyclase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T761_ACIDE Length = 398 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 63/266 (23%), Positives = 115/266 (43%), Gaps = 18/266 (6%) Query: 55 GAGSLAFPLPALIWCAVRYT-----PQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIP 109 G + F + + + LL + + +L + I VG + Sbjct: 121 ALGGILFAIQGFLVAREVLRRDNGVLERGRLLLAIGAGMVSLLYLQRTLGI-VGGWNEVA 179 Query: 110 QMFSARL---GIATMAICPIMVS---FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 Q+ +A G M + +++S F + + +A D LT V +R L Sbjct: 180 QLKTAHFIQVGSHAMGLAGLVLSTMGFILMGRERADAEHQQQALLDPLTGVPNRRALMAE 239 Query: 164 LKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L+ ++++ + + ++++DID FK +ND YGH GD VL+ A+ ++ + + + R Sbjct: 240 LERTLAQAVRERRPVALLMMDIDRFKRVNDTYGHVAGDAVLAAVAQCLKGGLRGQDFIGR 299 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF +P + ++AE +R VE W+ + + +TVSIG Sbjct: 300 YGGEEFLALLPGTDAAGAGVVAEHLRARVERLTMPWEPEDIRVTVSIG---AHTRVPDEG 356 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTS 306 ++ AD +Y +K+ GRNR Sbjct: 357 TGAQAMVDVADQAMYAAKRAGRNRVE 382 >UniRef50_A1U4U5 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A1U4U5_MARAV Length = 571 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 136/318 (42%), Gaps = 30/318 (9%) Query: 13 GVLIVPCMLTLAIPGVLPRFKAEQM-------MPAIALIVSVIASVVIGGAGSLAFPLPA 65 ++ +P L L + + + + M A+ ++ V I A A L A Sbjct: 248 SLITMPIFLLLFMMAIFETHEYFRTEHRVLQGMLALLVVTFVYGLFDIATALKPASSLAA 307 Query: 66 LIWCAVRYTPQVTC------LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIA 119 L+ V ++ ++ L+ F +V N + + S +GI Sbjct: 308 LM-MVVTFSVSISLFRKGHPLVKFFLVGHTFFVVFNGFAVLYYKGLVQPNYINSHGVGIG 366 Query: 120 TMAICPIMVSFSVA-------AINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSL 169 + + + ++F ++ I S ++ +A D LT++++R E + + Sbjct: 367 -IVLEALTLAFIISYRIKVLEDIRSKQDELKRQASTDPLTRLFNRRYFMAEGEYVLEQAR 425 Query: 170 KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 + L+V+ +DID+FK++ND +GH GD VL A ++ D+ LVAR GGEEF + Sbjct: 426 TSGEPLSVIAIDIDHFKAVNDTHGHNVGDLVLVEVASVFRQFSRDRDLVARFGGEEFVIL 485 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 +P + +G AE+IR VE + +TVS+GV L + + Sbjct: 486 LPGADLTEGFGCAERIRNAVEAMVIDGGDGLAVRVTVSVGVAEVNP----LLESVEGAVK 541 Query: 289 EADTCLYRSKKDGRNRTS 306 AD LY +K GRNR Sbjct: 542 RADRSLYEAKAGGRNRVC 559 >UniRef50_C1TNZ5 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNZ5_9BACT Length = 481 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 94/205 (45%), Gaps = 8/205 (3%) Query: 107 SIPQMFSARLGIATMA---ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 + + L I + I ++ S + + ++V A D LT +++R A Sbjct: 282 DVTKAIRHTLAINILVGGLITLVVTSLVALIVRNYERRVERLASVDELTGMWNRRAFDLA 341 Query: 164 LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 K +V ++DID+FK +ND YGH GD+VL + K +G + R GG Sbjct: 342 FAHLLEKFEGQCSVTMMDIDHFKHVNDTYGHLMGDRVLGHVCDVVTKAIGPDDVCGRWGG 401 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF 283 EEF V + D + AEKIR+ VE P+ L +TVS+GV + Sbjct: 402 EEFIVLLKGRKKGDAVKTAEKIRRAVEASPYEDGDVVLPITVSLGVAEHHP-----GESR 456 Query: 284 NKLMVEADTCLYRSKKDGRNRTSTM 308 + AD LYR+K+ GRNRT + Sbjct: 457 ETTIARADQALYRAKESGRNRTESA 481 >UniRef50_B3QU32 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QU32_CHLT3 Length = 606 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 15/195 (7%) Query: 121 MAICPIMVSFSVAAINSLMKQVALRADF-------DFLTQVYSRSGLYEALK---SPSLK 170 + + + + + A L++++ +A+ D LT + +R E + + + Sbjct: 415 LEVTTLALKEANAENQLLLERLREQAETLERLVTYDGLTGLANRRHFDEQFEYEFRRTRR 474 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + L++ + DID+FK +NDN+ H+ GD+VL A ++ V LVAR GGEEF Sbjct: 475 YKRPLSIAMSDIDFFKKVNDNFSHQVGDEVLKKVASIFRENVRAGDLVARYGGEEFVFIF 534 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 N + AEKIRK +E ++ L +T+SIGV D ++L+ A Sbjct: 535 TETNKESAIRAAEKIRKAIEDYDWSNVHAGLKVTISIGVAEDAG-----FDGCDELIAAA 589 Query: 291 DTCLYRSKKDGRNRT 305 D+ LY +K++GRN+ Sbjct: 590 DSKLYEAKRNGRNQV 604 >UniRef50_A1SRM4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRM4_PSYIN Length = 1078 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 13/188 (6%) Query: 126 IMVSF--SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLL 180 IMV F V + +++ L A D LT + +R L S + + L++++ Sbjct: 899 IMVGFFHDVTERKKVEEEIKLLATTDSLTGIANRRAFSTHLASELERSNRYGTPLSLVMF 958 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFK +NDN+GH+ GD VL + +++ + +VAR GGEEF + +P + Sbjct: 959 DIDYFKKVNDNFGHDAGDDVLQALSELVKRNIRAVDIVARWGGEEFMLLMPESDISAATA 1018 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 EK+R+ + PF + LTVS G+ L +D + D LY++K+ Sbjct: 1019 AIEKLRREISDFPF---GQVGSLTVSFGITVF-----VLNEDSKVFLKRVDDALYQAKEK 1070 Query: 301 GRNRTSTM 308 GRNR + Sbjct: 1071 GRNRVEIL 1078 >UniRef50_Q2BQL8 Probable two-component response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQL8_9GAMM Length = 505 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 128/295 (43%), Gaps = 17/295 (5%) Query: 32 FKAEQMMPAIALIVSVIASVVIGGAGSLAFPLP-----ALIWCAVRYTPQVTCLLTFVTG 86 E++ P IA + + ++ G L L L+ C + ++ L +T Sbjct: 214 HGIEKIWPMIATLRNEFNILLPSSKGELTTLLAEDQPDLLLLCTEQQWQEMLSLCQEITA 273 Query: 87 AVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK---QVA 143 + + + + + + + T+ P ++ + + L + Q+A Sbjct: 274 NKDDYTLPVAFVSADLDDQRELDAYNAGAADFLTLNRAPAVLQSRIQILMQLKQSQDQLA 333 Query: 144 LRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 A D LTQV +R ++ + + + L +++LDID+FK ND YGH GD Sbjct: 334 RSARVDGLTQVNNRREFERNIEMEWRRAQRSKRSLALIMLDIDHFKPFNDGYGHLAGDGC 393 Query: 201 LSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-- 257 L A+ I+ + + +V R GGEEF V +P + ++AE+IRK + + Sbjct: 394 LRTVAQTIKHSIQRAQDMVCRYGGEEFVVILPETDLDGAQMIAERIRKAIAKLKINHEFS 453 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 +T+S GV S ++L++ AD LY++K GRN+ + ++ E Sbjct: 454 STDNTITISAGVACLSPSQ---EGSPHELILLADQGLYQAKAQGRNQVAIVQTSE 505 >UniRef50_A1RG31 Diguanylate cyclase n=3 Tax=Shewanella RepID=A1RG31_SHESW Length = 362 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 135/288 (46%), Gaps = 17/288 (5%) Query: 26 PGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALI--WCAVRYTPQVTCLLTF 83 P LP + + S+ + +++G + L A I A + P L+ Sbjct: 78 PKQLPPIIQWSWVVVFSQ--SLSSVLILGADAGFQYYLLATIPPSFASIFKPLFYKLIQA 135 Query: 84 VTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN---SLMK 140 + + L+ + +M S I + C ++ S A S + Sbjct: 136 LI-IIVFFLICDIWFIDYEPYYLYSDEMISLFRHINVLGACALLAGVSYAYSQIVMSAIT 194 Query: 141 QVALRADFDFLTQVYSRS---GLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECG 197 + A+ D LT + +R L + + +L+ ++++L DIDYFK IND+YGH G Sbjct: 195 ALRNVANTDELTGLINRRSLTALIDREAARTLRTHASMSLVLCDIDYFKRINDSYGHAAG 254 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL A +Q ++ + +VAR GGEEF + +P+ + ++ + +AE++R+ V +++ Sbjct: 255 DHVLVNVANLLQGVLREYDVVARWGGEEFLLLLPNTDIIEAMKVAERLREIVACSHLSFE 314 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 ++T+ +T+++GV ++++ + AD LYR K+ GRN Sbjct: 315 EQTIPVTMTLGVAVL------GDENWHSTLARADEALYRGKRQGRNCV 356 >UniRef50_A9L0C9 Diguanylate cyclase n=2 Tax=Shewanella baltica RepID=A9L0C9_SHEB9 Length = 466 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 77/309 (24%), Positives = 150/309 (48%), Gaps = 19/309 (6%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPAL-IW 68 + G +++P + +LA+ L +P + S ++ L + L AL + Sbjct: 152 WLWGFVLIPVLCSLAL--ALFATWGSHWLPILIAKNSYK-QLLHSPYALLVWGLNALALV 208 Query: 69 CAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIA---TMAICP 125 C +R L T+++ A+ L+ + + + G+ FS+ ++AR+ + + +C Sbjct: 209 CMIRRARSNNVLYTWLSVALLASLI-DVTLTLFAGARFSLG-WYAARISSSVSSMVLLCA 266 Query: 126 IM--VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLL 180 ++ V+ A + + ++ D LT +++R L L + + + L +++L Sbjct: 267 LLWEVNRLYVATQRANESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVL 326 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGL 239 D+D+FK+ ND +GH GD L A+ +++ + +AR GGEEF V +P + DG+ Sbjct: 327 DVDHFKAFNDQHGHLAGDDCLVTVAKQLEQSLYRPADFIARYGGEEFIVVLPHTDAKDGM 386 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE++R V + +Q + L +T+SIG R S + L++ AD+ LY++K Sbjct: 387 QIAERLRLNVSAEKIEYQGQLLSVTISIGCAVLRHS----EETAQSLLIAADSALYQAKA 442 Query: 300 DGRNRTSTM 308 GRN Sbjct: 443 AGRNCVKVA 451 >UniRef50_A0YVN1 PleD-like protein n=2 Tax=Cyanobacteria RepID=A0YVN1_9CYAN Length = 1252 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 11/222 (4%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDF 150 ++ + + + + + Q+ A+ +A + + ++ A L ++ ++ D Sbjct: 1034 MMAQGNTLGLLYIATLTPGQLTPAKRQLARTVVEHLAIAL---ANVKLQEKFKAQSMRDA 1090 Query: 151 LTQVYSRSGLYEALKSPSLKQTQ-HLTV--MLLDIDYFKSINDNYGHECGDKVLSVFARH 207 LT +++R L E+L+ + + H +V +++DID+FK ND +GH+ GD+VL AR Sbjct: 1091 LTGLFNRRYLEESLEQEIHRARRNHYSVGIVMIDIDHFKRFNDQFGHDAGDEVLKTVARL 1150 Query: 208 IQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL-YLTVS 266 +Q + + R GGEE + +P + D +E+IR +E ++ ++L +T S Sbjct: 1151 LQGSIRSSDIACRYGGEELTLILPEASLSDTQARSEQIRYMIEHLQLHYENQSLGSITAS 1210 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 GV + + ++ ADT LY++K GRNR Sbjct: 1211 FGVAC----FPEHGETLEAVLRIADTALYQAKALGRNRVVCA 1248 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8XAZ4 Uncharacterized protein yneF n=65 Tax=Enterobact... 369 e-101 UniRef50_D2TIF8 Putative signal transduction protein n=2 Tax=Ent... 342 9e-93 UniRef50_A8A075 Diguanylate cyclase (GGDEF) domain protein n=2 T... 322 1e-86 UniRef50_B1JAS6 Diguanylate cyclase n=5 Tax=Pseudomonas RepID=B1... 302 1e-80 UniRef50_D0IXN6 Diguanylate cyclase n=2 Tax=Comamonas testostero... 291 2e-77 UniRef50_C6CDM3 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech... 282 1e-74 UniRef50_A0P392 GGDEF domain protein n=1 Tax=Labrenzia aggregata... 276 7e-73 UniRef50_C8QCH2 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b Re... 276 7e-73 UniRef50_B5JW02 Diguanylate cyclase n=1 Tax=gamma proteobacteriu... 274 3e-72 UniRef50_A8GAZ5 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GAZ... 273 6e-72 UniRef50_A8V0B5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydro... 269 9e-71 UniRef50_D0FTB2 Conserved uncharacterized protein YneF n=3 Tax=E... 268 2e-70 UniRef50_C6CM30 Diguanylate cyclase n=1 Tax=Dickeya zeae Ech1591... 268 2e-70 UniRef50_C6RK39 Diguanylate cyclase n=2 Tax=Acinetobacter radior... 267 3e-70 UniRef50_D0S942 Response regulator n=2 Tax=Acinetobacter RepID=D... 267 3e-70 UniRef50_D2C311 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech... 265 2e-69 UniRef50_C6DKF8 Diguanylate cyclase n=5 Tax=Pectobacterium RepID... 265 2e-69 UniRef50_B7GZC2 Uncharacterized protein yneF n=10 Tax=Acinetobac... 265 2e-69 UniRef50_B8FCK6 Response regulator receiver modulated diguanylat... 264 3e-69 UniRef50_Q4KDW8 GGDEF domain protein n=6 Tax=Pseudomonas RepID=Q... 263 8e-69 UniRef50_B8DLP9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 262 1e-68 UniRef50_C6WYA7 Diguanylate cyclase with PAS/PAC and GAF sensors... 261 3e-68 UniRef50_B4U6Y8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 260 4e-68 UniRef50_C1SIQ7 Diguanylate cyclase (GGDEF) domain-containing pr... 260 4e-68 UniRef50_B5JX81 Diguanylate cyclase n=1 Tax=gamma proteobacteriu... 260 5e-68 UniRef50_Q30QX5 Diguanylate cyclase n=2 Tax=Proteobacteria RepID... 259 9e-68 UniRef50_Q39ZK6 Response regulator receiver modulated diguanylat... 258 1e-67 UniRef50_D1U434 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 258 2e-67 UniRef50_A9WGU1 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A... 258 2e-67 UniRef50_A9C2H0 Diguanylate cyclase n=2 Tax=cellular organisms R... 257 3e-67 UniRef50_A8FZ07 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8F... 257 3e-67 UniRef50_Q21HV6 Response regulator receiver modulated diguanylat... 257 4e-67 UniRef50_C6NZP2 Periplasmic/7TM domain sensor diguanylate cyclas... 257 4e-67 UniRef50_C1XLF8 Diguanylate cyclase (GGDEF) domain-containing pr... 256 5e-67 UniRef50_A3J8Q2 Two-component response regulator protein n=1 Tax... 256 7e-67 UniRef50_Q3ADQ4 Response regulator/sensory box protein/GGDEF dom... 256 8e-67 UniRef50_C6WYA9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 256 9e-67 UniRef50_A8ZX32 Diguanylate cyclase n=1 Tax=Desulfococcus oleovo... 256 9e-67 UniRef50_A8GES9 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GES... 256 9e-67 UniRef50_B4VVS2 GGDEF domain protein n=1 Tax=Microcoleus chthono... 255 2e-66 UniRef50_B3E6Y7 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ... 255 2e-66 UniRef50_B3EBI3 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ... 255 2e-66 UniRef50_B8DLV9 Diguanylate cyclase n=4 Tax=Desulfovibrio vulgar... 255 2e-66 UniRef50_C6C0X5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 254 3e-66 UniRef50_C6BW86 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 254 3e-66 UniRef50_C6DJJ8 Diguanylate cyclase n=1 Tax=Pectobacterium carot... 254 3e-66 UniRef50_C8X5B9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 254 3e-66 UniRef50_A0YVG8 GGDEF/response regulator receiver domain protein... 253 4e-66 UniRef50_B7K273 Response regulator receiver modulated diguanylat... 253 5e-66 UniRef50_A1U2H0 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A... 253 5e-66 UniRef50_C0N773 GGDEF domain protein n=1 Tax=Methylophaga thioox... 253 5e-66 UniRef50_Q310L5 Diguanylate cyclase (GGDEF domain) n=2 Tax=Desul... 253 6e-66 UniRef50_C3JIZ7 Diguanylate cyclase n=2 Tax=Rhodococcus erythrop... 253 6e-66 UniRef50_B1WQB8 Putative diguanylate cyclase n=2 Tax=Cyanothece ... 253 7e-66 UniRef50_A4BG19 GGDEF domain protein n=1 Tax=Reinekea blandensis... 253 7e-66 UniRef50_C6BVV0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 253 9e-66 UniRef50_A1TWP6 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A... 252 1e-65 UniRef50_C0QT79 Signal transduction response regulator n=1 Tax=P... 252 1e-65 UniRef50_Q1N175 Diguanylate cyclase (GGDEF domain) n=1 Tax=Berma... 252 1e-65 UniRef50_C5SA57 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 252 1e-65 UniRef50_D2L2K3 Diguanylate cyclase with GAF sensor n=1 Tax=Desu... 252 1e-65 UniRef50_A3Y6S3 PAS:GGDEF protein n=1 Tax=Marinomonas sp. MED121... 252 1e-65 UniRef50_D1U9C4 Diguanylate cyclase n=1 Tax=Desulfovibrio aespoe... 252 1e-65 UniRef50_Q2VYV6 FOG: GGDEF domain n=2 Tax=Magnetospirillum RepID... 251 2e-65 UniRef50_A1AK55 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=... 251 2e-65 UniRef50_A5GCU4 Diguanylate cyclase n=2 Tax=Geobacter RepID=A5GC... 251 2e-65 UniRef50_Q47Y21 GGDEF domain protein n=1 Tax=Colwellia psychrery... 251 2e-65 UniRef50_Q15V65 Diguanylate cyclase n=1 Tax=Pseudoalteromonas at... 251 2e-65 UniRef50_Q47W79 GGDEF domain protein n=1 Tax=Colwellia psychrery... 251 3e-65 UniRef50_Q1JXK3 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 251 3e-65 UniRef50_Q0EXC8 Signal transduction protein containing a membran... 250 4e-65 UniRef50_A1U7E6 Diguanylate cyclase n=1 Tax=Marinobacter aquaeol... 250 4e-65 UniRef50_D0SXM5 Predicted protein n=2 Tax=Acinetobacter lwoffii ... 250 5e-65 UniRef50_B8DIJ3 Diguanylate cyclase with PAS/PAC and GAF sensors... 250 6e-65 UniRef50_B8FMG8 Diguanylate cyclase n=1 Tax=Desulfatibacillum al... 250 6e-65 UniRef50_B7R5U6 PAS fold family protein n=13 Tax=Thermoanaerobac... 250 6e-65 UniRef50_A3WKT4 GGDEF domain protein n=2 Tax=Alteromonadales Rep... 250 6e-65 UniRef50_D0KF92 Diguanylate cyclase n=1 Tax=Pectobacterium wasab... 250 7e-65 UniRef50_Q085X7 Diguanylate cyclase n=2 Tax=Alteromonadales RepI... 250 7e-65 UniRef50_A6DDS7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Camin... 250 7e-65 UniRef50_C0QM24 Putative uncharacterized protein n=1 Tax=Desulfo... 249 7e-65 UniRef50_C4XS30 GGDEF domain protein n=1 Tax=Desulfovibrio magne... 249 8e-65 UniRef50_A8TM57 Putative diguanylate cyclase (GGDEF domain) with... 249 1e-64 UniRef50_B8GRD6 Diguanylate cyclase n=1 Tax=Thioalkalivibrio sp.... 249 1e-64 UniRef50_A1U4U5 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A... 248 1e-64 UniRef50_C9YC42 Putative uncharacterized protein n=1 Tax=Curviba... 248 1e-64 UniRef50_Q2SME0 Response regulator containing a CheY-like receiv... 248 1e-64 UniRef50_C7R6Y0 Diguanylate cyclase n=1 Tax=Kangiella koreensis ... 248 1e-64 UniRef50_C4XPG9 GGDEF domain protein n=1 Tax=Desulfovibrio magne... 248 2e-64 UniRef50_Q3IJX5 Putative uncharacterized protein n=2 Tax=Alterom... 248 2e-64 UniRef50_Q30WV4 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 248 2e-64 UniRef50_C7LRA7 Diguanylate cyclase n=1 Tax=Desulfomicrobium bac... 248 2e-64 UniRef50_C8WZ84 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 248 2e-64 UniRef50_A3WKY5 Signaling protein with a ligand-binding sensor d... 248 2e-64 UniRef50_A1WM32 Diguanylate cyclase n=2 Tax=Burkholderiales RepI... 248 2e-64 UniRef50_C7LVZ4 Diguanylate cyclase n=1 Tax=Desulfomicrobium bac... 248 2e-64 UniRef50_Q1N3P2 Probable two-component response regulator n=1 Ta... 248 2e-64 UniRef50_A6Q2P1 Putative uncharacterized protein n=1 Tax=Nitrati... 248 2e-64 UniRef50_Q30SB7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Sulfu... 248 2e-64 UniRef50_Q2RNW0 Putative diguanylate cyclase (GGDEF domain) n=1 ... 248 2e-64 UniRef50_Q67JR0 Putative uncharacterized protein n=1 Tax=Symbiob... 248 3e-64 UniRef50_Q2BQL8 Probable two-component response regulator n=1 Ta... 248 3e-64 UniRef50_B1KMS8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 247 3e-64 UniRef50_B3E5R5 Response regulator receiver modulated diguanylat... 247 3e-64 UniRef50_C5T8F5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 247 3e-64 UniRef50_A1SRL2 Diguanylate cyclase n=1 Tax=Psychromonas ingraha... 247 3e-64 UniRef50_Q0A8G7 Diguanylate cyclase n=1 Tax=Alkalilimnicola ehrl... 247 4e-64 UniRef50_Q2W1M0 Response regulator containing a CheY-like receiv... 247 4e-64 UniRef50_B9ZM04 Diguanylate cyclase n=1 Tax=Thioalkalivibrio sp.... 247 5e-64 UniRef50_A4BIU7 Response regulator containing a CheY-like receiv... 247 5e-64 UniRef50_Q315M6 Diguanylate cyclase n=1 Tax=Desulfovibrio desulf... 246 5e-64 UniRef50_C0QBK1 GGDEF domain family protein n=1 Tax=Desulfobacte... 246 6e-64 UniRef50_A0L7F5 Cyclic nucleotide-binding protein n=1 Tax=Magnet... 246 6e-64 UniRef50_UPI0000384142 COG2199: FOG: GGDEF domain n=1 Tax=Magnet... 246 6e-64 UniRef50_B9ZRW3 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 246 7e-64 UniRef50_A3Y5H4 Diguanylate cyclase (GGDEF domain) n=1 Tax=Marin... 246 7e-64 UniRef50_Q087A8 Diguanylate cyclase n=1 Tax=Shewanella frigidima... 246 8e-64 UniRef50_A3WMD3 Phytochrome sensor diguanylate cyclase/phosphodi... 246 9e-64 UniRef50_Q2SNU2 Response regulator containing a CheY-like receiv... 246 9e-64 UniRef50_C6BZS4 Diguanylate cyclase with PAS/PAC and GAF sensors... 246 9e-64 UniRef50_A0L4D8 Diguanylate cyclase n=2 Tax=cellular organisms R... 246 9e-64 UniRef50_B3PIC1 Sensory box/GGDEF family protein n=5 Tax=Gammapr... 246 9e-64 UniRef50_A4VQQ9 GGDEF domain protein n=1 Tax=Pseudomonas stutzer... 246 1e-63 UniRef50_Q489Q4 Sensory box/GGDEF domain protein n=1 Tax=Colwell... 246 1e-63 UniRef50_B0TJ24 Periplasmic/7TM domain sensor diguanylate cyclas... 246 1e-63 UniRef50_A9WIR5 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A... 245 1e-63 UniRef50_C3JRE9 Diguanylate cyclase n=2 Tax=Rhodococcus erythrop... 245 1e-63 UniRef50_C0QLY1 Two domain sensory box histidine kinase (PAS/PAC... 245 1e-63 UniRef50_Q8DCJ9 FOG: GGDEF domain n=3 Tax=Vibrio RepID=Q8DCJ9_VIBVU 245 1e-63 UniRef50_Q1K485 Diguanylate cyclase n=1 Tax=Desulfuromonas aceto... 245 2e-63 UniRef50_A4XVW9 Periplasmic/7TM domain sensor diguanylate cyclas... 245 2e-63 UniRef50_A4C957 Putative uncharacterized protein n=1 Tax=Pseudoa... 245 2e-63 UniRef50_A1ASG6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 245 2e-63 UniRef50_C1TNC9 Diguanylate cyclase (GGDEF) domain-containing pr... 245 2e-63 UniRef50_B4U5K2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 245 2e-63 UniRef50_Q6AJ00 Putative uncharacterized protein n=1 Tax=Desulfo... 245 2e-63 UniRef50_Q21PN7 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 245 2e-63 UniRef50_B4VK28 GGDEF domain protein n=1 Tax=Microcoleus chthono... 245 2e-63 UniRef50_Q0BZW4 Response regulator PleD n=1 Tax=Hyphomonas neptu... 245 2e-63 UniRef50_C6BU46 Diguanylate cyclase n=1 Tax=Desulfovibrio salexi... 245 2e-63 UniRef50_Q2IX34 Diguanylate cyclase n=5 Tax=Rhodopseudomonas pal... 245 2e-63 UniRef50_Q5P7Y3 Putative uncharacterized protein n=1 Tax=Aromato... 244 2e-63 UniRef50_Q0A5N6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 244 2e-63 UniRef50_B4UA43 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 244 2e-63 UniRef50_Q31EI0 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiom... 244 3e-63 UniRef50_Q21NS3 Diguanylate cyclase n=5 Tax=Alteromonadales RepI... 244 3e-63 UniRef50_Q3JE99 Response regulator receiver modulated diguanylat... 244 3e-63 UniRef50_A5D1G5 Hypothetical signaling protein n=1 Tax=Pelotomac... 244 3e-63 UniRef50_C0QQU4 Response regulator receiver modulated diguanylat... 244 3e-63 UniRef50_UPI0001AEC0DE GGDEF domain protein n=1 Tax=Alteromonas ... 244 3e-63 UniRef50_C4XKN6 Putative signaling protein n=2 Tax=Desulfovibrio... 244 3e-63 UniRef50_B9Z0Y0 Diguanylate cyclase n=1 Tax=Lutiella nitroferrum... 244 4e-63 UniRef50_Q2BML0 Putative diguanylate cyclase (GGDEF domain) n=1 ... 244 4e-63 UniRef50_A7BV03 Sensor protein n=2 Tax=Beggiatoa sp. PS RepID=A7... 244 4e-63 UniRef50_Q74AN9 Response regulator n=1 Tax=Geobacter sulfurreduc... 244 4e-63 UniRef50_B8DJ36 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 244 4e-63 UniRef50_Q6ALC0 Putative uncharacterized protein n=1 Tax=Desulfo... 243 4e-63 UniRef50_C1A5L7 Putative two-component response regulator n=1 Ta... 243 4e-63 UniRef50_Q21VE2 Diguanylate cyclase n=1 Tax=Rhodoferax ferriredu... 243 5e-63 UniRef50_B2V6Y8 Diguanylate cyclase n=1 Tax=Sulfurihydrogenibium... 243 5e-63 UniRef50_B6BK11 Ggdef/pas/pac-domain containing protein n=1 Tax=... 243 5e-63 UniRef50_B0C2A6 Diguanylate cyclase (GGDEF domain), putative n=3... 243 5e-63 UniRef50_C6P3N4 Diguanylate cyclase n=1 Tax=Sideroxydans lithotr... 243 5e-63 UniRef50_A7N081 Putative uncharacterized protein n=6 Tax=Vibrio ... 243 5e-63 UniRef50_Q30SY9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Sulfu... 243 6e-63 UniRef50_Q31GI5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiom... 243 6e-63 UniRef50_B7VQN9 GGDEF family protein n=1 Tax=Vibrio splendidus L... 243 7e-63 UniRef50_C8X007 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 243 7e-63 UniRef50_Q47C76 PAS:GGDEF n=1 Tax=Dechloromonas aromatica RCB Re... 243 7e-63 UniRef50_A9L0C9 Diguanylate cyclase n=2 Tax=Shewanella baltica R... 243 7e-63 UniRef50_B8KJJ5 GGDEF domain protein n=2 Tax=unclassified Gammap... 243 7e-63 UniRef50_Q5NP17 Diguanylate cyclase with beta propeller sensor n... 243 7e-63 UniRef50_A0LD73 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC... 242 9e-63 UniRef50_A5V1I0 Diguanylate cyclase with GAF sensor n=2 Tax=Rose... 242 9e-63 UniRef50_A4SM80 GGDEF domain protein n=2 Tax=Aeromonas RepID=A4S... 242 9e-63 UniRef50_Q2BQS0 GGDEF family protein n=1 Tax=Neptuniibacter caes... 242 9e-63 UniRef50_A1TWT4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 242 1e-62 UniRef50_B0SEM7 GGDEF domain protein n=2 Tax=Leptospira biflexa ... 242 1e-62 UniRef50_Q2BP61 GGDEF/HAMP domain protein n=1 Tax=Neptuniibacter... 242 1e-62 UniRef50_C0QC96 Sensory box histidine kinase (GGDEF domain prote... 242 1e-62 UniRef50_Q31IP8 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 242 1e-62 UniRef50_Q2BLA2 Putative uncharacterized protein n=1 Tax=Neptuni... 242 1e-62 UniRef50_A6LYL1 Diguanylate cyclase n=1 Tax=Clostridium beijerin... 242 1e-62 UniRef50_B0C0K6 Diguanylate cyclase (GGDEF) domain protein n=3 T... 242 1e-62 UniRef50_B7K319 Response regulator receiver modulated diguanylat... 242 1e-62 UniRef50_A8I8X7 GGDEF domain protein n=2 Tax=cellular organisms ... 242 1e-62 UniRef50_A8HRM0 Putative diguanylate cyclase n=1 Tax=Azorhizobiu... 242 2e-62 UniRef50_Q21JG3 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 241 2e-62 UniRef50_A1TTA7 Diguanylate cyclase n=2 Tax=Acidovorax RepID=A1T... 241 2e-62 UniRef50_A0Z7X2 Response regulator n=1 Tax=marine gamma proteoba... 241 2e-62 UniRef50_A8UV88 Putative uncharacterized protein n=1 Tax=Hydroge... 241 2e-62 UniRef50_B3QU32 Diguanylate cyclase and serine/threonine protein... 241 2e-62 UniRef50_A1VA66 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=... 241 2e-62 UniRef50_C8QVV3 Diguanylate cyclase n=1 Tax=Desulfurivibrio alka... 241 2e-62 UniRef50_Q0A9X2 Diguanylate cyclase n=3 Tax=Proteobacteria RepID... 241 2e-62 UniRef50_Q1JWQ3 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 241 2e-62 UniRef50_B4RZE8 GGDEF domain protein n=2 Tax=Alteromonadales Rep... 241 3e-62 UniRef50_D1TF13 Response regulator receiver protein n=1 Tax=Burk... 241 3e-62 UniRef50_Q48M78 Sensory box-containing diguanylate cyclase, puta... 241 3e-62 UniRef50_Q7NZV8 Putative uncharacterized protein n=1 Tax=Chromob... 241 3e-62 UniRef50_A0YVN1 PleD-like protein n=2 Tax=Cyanobacteria RepID=A0... 241 3e-62 UniRef50_C9RM68 Diguanylate cyclase n=1 Tax=Fibrobacter succinog... 240 4e-62 UniRef50_A0KXZ1 Diguanylate cyclase n=4 Tax=Shewanella RepID=A0K... 240 4e-62 UniRef50_C5T1B3 Diguanylate cyclase n=1 Tax=Acidovorax delafield... 240 4e-62 UniRef50_Q2SUR3 GGDEF domain protein n=54 Tax=Burkholderiaceae R... 240 5e-62 UniRef50_A4CE22 Response regulator containing a CheY-like receiv... 240 5e-62 UniRef50_D1U463 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 240 5e-62 UniRef50_A8DJI0 Sensor protein n=1 Tax=Candidatus Chloracidobact... 240 5e-62 UniRef50_C6P6Y5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 240 5e-62 UniRef50_Q2RNX7 Putative diguanylate cyclase (GGDEF domain) with... 240 5e-62 UniRef50_A1RG31 Diguanylate cyclase n=3 Tax=Shewanella RepID=A1R... 240 6e-62 UniRef50_Q1D095 Response regulator/GGDEF domain protein n=3 Tax=... 240 6e-62 UniRef50_A1SRM4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 240 6e-62 UniRef50_C4KD29 Response regulator receiver modulated diguanylat... 240 7e-62 UniRef50_B1J820 Diguanylate cyclase n=1 Tax=Pseudomonas putida W... 240 7e-62 UniRef50_Q31M78 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 240 7e-62 UniRef50_B8KV43 Sensory box histidine kinase n=1 Tax=gamma prote... 240 7e-62 UniRef50_A4TZM8 GGDEF domain n=1 Tax=Magnetospirillum gryphiswal... 240 7e-62 UniRef50_A6G7C6 FHA domain/GGDEF domain protein n=1 Tax=Plesiocy... 239 8e-62 UniRef50_B7IH39 Diguanylate cyclase n=2 Tax=Bacteria RepID=B7IH3... 239 9e-62 UniRef50_A9B3D1 Diguanylate cyclase n=2 Tax=Bacteria RepID=A9B3D... 239 9e-62 UniRef50_A1VD57 Diguanylate cyclase n=3 Tax=Desulfovibrio vulgar... 239 9e-62 UniRef50_C6WY37 Diguanylate cyclase n=1 Tax=Methylotenera mobili... 239 9e-62 UniRef50_Q47A94 Diguanylate cyclase n=1 Tax=Dechloromonas aromat... 239 1e-61 UniRef50_A0L8W1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 239 1e-61 UniRef50_B3PC25 YaiC/YhcK/ArdA family protein n=1 Tax=Cellvibrio... 239 1e-61 UniRef50_B6IN39 Response regulator With diguanylate cyclase (GGD... 239 1e-61 UniRef50_C8X290 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 239 1e-61 UniRef50_A8UY29 Putative uncharacterized protein n=1 Tax=Hydroge... 239 1e-61 UniRef50_Q21GT7 GGDEF domain n=1 Tax=Saccharophagus degradans 2-... 239 1e-61 UniRef50_A9FZW1 FHA domain protein n=1 Tax=Sorangium cellulosum ... 239 1e-61 UniRef50_D1U6K0 Diguanylate cyclase with PAS/PAC sensor and heme... 239 1e-61 UniRef50_Q4KKJ4 Diguanylate cyclase, putative n=5 Tax=Pseudomona... 239 1e-61 UniRef50_Q1MYJ5 Response regulator containing a CheY-like receiv... 239 1e-61 UniRef50_C0Z6I5 Putative uncharacterized protein n=1 Tax=Breviba... 238 1e-61 UniRef50_Q6AL41 Putative uncharacterized protein n=1 Tax=Desulfo... 238 1e-61 UniRef50_A3J836 Putative diguanylate cyclase (GGDEF domain) n=1 ... 238 1e-61 UniRef50_A8UWP4 Response regulator containing a CheY-like receiv... 238 2e-61 UniRef50_Q2IZF7 Diguanylate cyclase n=5 Tax=Rhodopseudomonas pal... 238 2e-61 UniRef50_C1F5G2 GAF domain/GGDEF domain protein n=1 Tax=Acidobac... 238 2e-61 UniRef50_Q2SPL3 Response regulator containing a CheY-like receiv... 238 2e-61 UniRef50_C6CQG0 Diguanylate cyclase n=7 Tax=Enterobacteriaceae R... 238 2e-61 UniRef50_B5JS67 Gaf/pas/ggdef domain protein n=1 Tax=gamma prote... 238 2e-61 UniRef50_A8UY33 Putative uncharacterized protein n=1 Tax=Hydroge... 238 2e-61 Sequences not found previously or not previously below threshold: UniRef50_UPI0001C3940A response regulator receiver modulated dig... 246 7e-64 UniRef50_Q04S93 GGDEF domain receiver component of a two-compone... 246 1e-63 UniRef50_Q30SV7 Diguanylate cyclase (GGDEF domain) with PAS/PAC ... 242 1e-62 UniRef50_B2A6L1 Response regulator receiver modulated diguanylat... 241 2e-62 UniRef50_B1XII1 PleD protein n=3 Tax=Bacteria RepID=B1XII1_SYNP2 240 5e-62 UniRef50_B4VMP7 GGDEF domain protein n=1 Tax=Microcoleus chthono... 240 7e-62 >UniRef50_Q8XAZ4 Uncharacterized protein yneF n=65 Tax=Enterobacteriaceae RepID=YNEF_ECO57 Length = 315 Score = 369 bits (947), Expect = e-101, Method: Composition-based stats. Identities = 314/315 (99%), Positives = 314/315 (99%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA Sbjct: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT Sbjct: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL Sbjct: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL Sbjct: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY TLTDDFNKLMVEADTCLYRSKKD Sbjct: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTCLYRSKKD 300 Query: 301 GRNRTSTMRYGEEVV 315 GRNRTSTMRYGEEVV Sbjct: 301 GRNRTSTMRYGEEVV 315 >UniRef50_D2TIF8 Putative signal transduction protein n=2 Tax=Enterobacteriaceae RepID=D2TIF8_CITRO Length = 484 Score = 342 bits (878), Expect = 9e-93, Method: Composition-based stats. Identities = 245/307 (79%), Positives = 276/307 (89%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLA 60 + ADWFSEQFSTGVLIVPCMLTL IPG + RF+ EQMMP IALIVSV+ASVVIGGAGSLA Sbjct: 163 LFADWFSEQFSTGVLIVPCMLTLGIPGSVKRFRPEQMMPVIALIVSVLASVVIGGAGSLA 222 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 FPLPALIWCAVRYTPQVTCLLTF+TGAVEIVLVANSVI+I+V SP S PQMFSARLGI T Sbjct: 223 FPLPALIWCAVRYTPQVTCLLTFLTGAVEIVLVANSVINIAVASPLSAPQMFSARLGIVT 282 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLL 180 MAICPIMV+FSVAAINSLMKQ++LRADFDFLTQVYSRSGLYEALK + +Q++TVMLL Sbjct: 283 MAICPIMVAFSVAAINSLMKQISLRADFDFLTQVYSRSGLYEALKRQAYPASQNMTVMLL 342 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSINDNYGHECGD+VL VFARHIQ+IVGD+GLVARMGGEEFAV +P+ +P +G+ Sbjct: 343 DIDYFKSINDNYGHECGDRVLCVFARHIQRIVGDRGLVARMGGEEFAVVLPTSHPEEGMQ 402 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE IRK V LQPF WQQ+++YLTVSIGVG+G+ + T+TD FNKLMVEAD CLYRSK + Sbjct: 403 LAETIRKAVALQPFDWQQQSIYLTVSIGVGNGKIAAQTVTDIFNKLMVEADECLYRSKNE 462 Query: 301 GRNRTST 307 GRNRTS Sbjct: 463 GRNRTSA 469 >UniRef50_A8A075 Diguanylate cyclase (GGDEF) domain protein n=2 Tax=Enterobacteriaceae RepID=A8A075_ECOHS Length = 279 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 278/279 (99%), Positives = 278/279 (99%) Query: 37 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS 96 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS Sbjct: 1 MMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANS 60 Query: 97 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 156 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS Sbjct: 61 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYS 120 Query: 157 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 216 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG Sbjct: 121 RSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 180 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 276 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY Sbjct: 181 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY 240 Query: 277 LTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 315 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV Sbjct: 241 RTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 279 >UniRef50_B1JAS6 Diguanylate cyclase n=5 Tax=Pseudomonas RepID=B1JAS6_PSEPW Length = 469 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 10/319 (3%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPR--FKAEQMMPAIALIVSVIASVVIGGAGSLAFP 62 WFSEQFST VL++P +LT L R +A + P + L+ S+ S+ GG G++AFP Sbjct: 153 WFSEQFSTAVLLLPVLLTAPSARALVRSGAQAVALAPLLVLLASLAFSIAFGGPGAIAFP 212 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVG-SPFSIPQMFSARLGIATM 121 + AL+WCA Y+P + LLT + G+ IV VA +++ SV S + + SAR+GIA + Sbjct: 213 IAALLWCAWTYSPFLVSLLTLIAGSTLIVAVAQNLMHFSVPQSELGVTTLMSARMGIAML 272 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS-LKQTQ----HLT 176 + P++V+ A SL+ ++A +A D LT +RS + +Q LT Sbjct: 273 ILGPLVVACVSQANRSLLARLAHQATIDHLTGALTRSAFTRRANALLDSRQKHAQALPLT 332 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 +M+LDID+FKSIND +GH GD+VL FAR +Q + L+ARMGGEEF V +P + P Sbjct: 333 LMMLDIDHFKSINDRHGHGVGDQVLRQFARTLQDQLHGGELLARMGGEEFVVLLPGLAPE 392 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 AE++R+ V+ +TVSIG+ ++L+ AD LYR Sbjct: 393 RASFTAERLRRAVQDLHLAKGDGRPQITVSIGLDGCAGHEPAP--TLDELLARADQALYR 450 Query: 297 SKKDGRNRTSTMRYGEEVV 315 +K GRNR +V+ Sbjct: 451 AKAHGRNRVEVAETQRQVI 469 >UniRef50_D0IXN6 Diguanylate cyclase n=2 Tax=Comamonas testosteroni RepID=D0IXN6_COMTE Length = 473 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 92/314 (29%), Positives = 163/314 (51%), Gaps = 13/314 (4%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAE-----QMMPAIALIVSVIASVVIGGA 56 + W S ++ ++ +P +L E +++P +++I S I G Sbjct: 162 FSMWLSSEWLNYMMFLPIVLAWPTRKQPVGHLGEPSPLRRILPLLSVIALEAISYWIKGP 221 Query: 57 GSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 GSLAF LPALIWCA+ Y L+T I+ ++ ++ + P + S R+ Sbjct: 222 GSLAFSLPALIWCALSYRIFSLTLITATLCLSSIIFISLGTLEFT---PAHFLETLSFRM 278 Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQ 173 G+ + + P+ V+ S A N LM++++ + DFLT + +R + + + Q Sbjct: 279 GLCMLVLGPLAVAGSHMARNELMQKLSHAVNHDFLTDMLARGAFMKQGQRILERCRQDGQ 338 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 +++LD+D+FK IND++GH GD++L F++ + +++ + +V RMGGEEFAVA+P V Sbjct: 339 PFAILMLDLDHFKQINDSFGHAGGDQLLRSFSQTLSQVLRAQDIVGRMGGEEFAVALPKV 398 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 + +A++I + + KT+ TVSIG+ + L + L+++AD Sbjct: 399 DASAAQEIAKRINRAIRELRVPMNDKTMSATVSIGLVHTTS--LQAHQSLDMLLLQADQA 456 Query: 294 LYRSKKDGRNRTST 307 LY +K GRNR S+ Sbjct: 457 LYEAKAAGRNRVSS 470 >UniRef50_C6CDM3 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech703 RepID=C6CDM3_DICDC Length = 469 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 178/311 (57%), Gaps = 6/311 (1%) Query: 2 LADWFSEQFSTGVLIVPCMLTL--AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSL 59 +WFS+QF T VL +P +LT+ I +P ++P + L S+I +I L Sbjct: 158 FLNWFSDQFYTSVLFLPLLLTVRSNIRLRIPALNFNDILPILFLAASLIVGAMISPLAIL 217 Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSI-PQMFSARLGI 118 AFPLPAL WCA+ Y +T L+T TG +++++ A V I G Q+ R+ I Sbjct: 218 AFPLPALTWCAIVYPLWLTRLITLCTGTLQLIVSAEHVYAIYSGLHDEFTNQVVITRISI 277 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT-QHLTV 177 A + P+ ++ + I L K++ L+A +DFLT SR G EAL + ++ ++++V Sbjct: 278 AAIIFSPLFMAMNAKTIRLLNKRLLLQASYDFLTNTLSRYGFNEALTNYGKEERYRNVSV 337 Query: 178 --MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 ML+DID+FK IND++GH+CGD+VL A I+ + ++GL++R+GGEEFAV +P Sbjct: 338 NIMLIDIDHFKHINDSFGHDCGDEVLKQVAAIIKDTINEQGLISRIGGEEFAVVCFDYSP 397 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 +A+K+R+ + F + Q + + +SIG+ + L + ++L +AD LY Sbjct: 398 DAFYWLADKLRRRIYETTFMFNQSPVPVAISIGLAHASSPNGDLLNTVHQLCTQADKNLY 457 Query: 296 RSKKDGRNRTS 306 +K+ GRN+T Sbjct: 458 AAKRQGRNQTV 468 >UniRef50_A0P392 GGDEF domain protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P392_9RHOB Length = 307 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 157/310 (50%), Gaps = 13/310 (4%) Query: 10 FSTGVLIVPCMLTLA--------IPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF 61 + +P +L+ P + +F E+ P I L+VS IA ++GG G++AF Sbjct: 1 MVNYISFLPVVLSAPKLDGTHTDFPARIRQFWQEKWAPLILLLVSCIAGTLVGGPGAIAF 60 Query: 62 PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM 121 P+PAL+WC + Y T +LT G +V+++N + S + + S RLGI+ + Sbjct: 61 PVPALLWCGLVYPVFPTTILTLCIGVWGLVILSNG-LGDSASLQLDVMTLVSIRLGISLV 119 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLD 181 A+ PIM+S N+L+ ++ A D LT V +R+ E T ++++D Sbjct: 120 ALAPIMLSCVTQNRNALVGRLQYLATHDQLTNVLNRNAFREEAARRLALGTSGFALLMVD 179 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D FK++ND +GH GD VL F ++ + L+ RMGGEEFAV +P VD + Sbjct: 180 LDDFKAVNDTHGHATGDTVLVNFVHRVKNTLPPGSLLGRMGGEEFAVLIPDCRQVDAVAE 239 Query: 242 AEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 AE IR+ V +P K + +T S+GV + D + L+ EAD Y +KK Sbjct: 240 AENIRQSVGTEPVPAGDGKEVRVTASLGVVAVEHG---DADSLDTLLAEADRLCYLAKKR 296 Query: 301 GRNRTSTMRY 310 GRNR + Sbjct: 297 GRNRVEAIEE 306 >UniRef50_C8QCH2 Diguanylate cyclase n=1 Tax=Pantoea sp. At-9b RepID=C8QCH2_9ENTR Length = 474 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 133/317 (41%), Positives = 197/317 (62%), Gaps = 4/317 (1%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVLPR--FKAEQMMPAIALIVSVIASVVIGGAGSLA 60 DWFSEQFST ++++P +L + VL R +++P +++S+ +IGGAGSL Sbjct: 154 GDWFSEQFSTSLMLLPVLLARPLRTVLWRSLLHPGKLLPLTGVVLSLTIGAMIGGAGSLT 213 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLGIA 119 FP+PALIWCA+ +T L+ +TG EI+LV++ V++I + I + S RLG+A Sbjct: 214 FPVPALIWCAIVLPIPITSLVLLITGITEIILVSHGVMNIQGDDALLPISHLTSVRLGVA 273 Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVML 179 T+ I P++V+ S+ AI L ++++LRA+FDFLTQ+ SRSGLYE L+ + V++ Sbjct: 274 TITISPLLVAVSMDAIRQLNQRLSLRANFDFLTQLLSRSGLYENLRQEPFSPQRAAGVVM 333 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LD+DYFK+INDN+GH+ GD VL AR IQ +V ++GLV R GGEEF V V N Sbjct: 334 LDVDYFKTINDNFGHDAGDGVLEEIARRIQDVVNNRGLVCRFGGEEFVVVVFDYNHSQLY 393 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRA-SYLTLTDDFNKLMVEADTCLYRSK 298 +AE IR+ + + F Q T+ +T S+G+ G A + N+L+ AD LY SK Sbjct: 394 QLAEVIRQSMVREKFWLQGNTVTVTASLGLALGNAVNEREWQGVVNRLISAADKNLYLSK 453 Query: 299 KDGRNRTSTMRYGEEVV 315 ++GRN+TS +V Sbjct: 454 RNGRNQTSPAVEPRPLV 470 >UniRef50_B5JW02 Diguanylate cyclase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JW02_9GAMM Length = 595 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 69/319 (21%), Positives = 121/319 (37%), Gaps = 16/319 (5%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPA--------IALIVSVIASVVI 53 + W + L +P + + + + A + + S + Sbjct: 271 IILWAASGLVVASLFLPYFYVIRVLIICTILACVMGLFAGFYRQVEGYGVARFYLYSWSL 330 Query: 54 GGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFS 113 G++ L + + L G V + ++ + Q + Sbjct: 331 FMLGAILVALNKFDVLPSNMITEYSMLFGTGVGTVVLSAALAVRLNDEKNKRYH-AQAEA 389 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ 173 R+ ++ + V +A+ +++ ++ D LT + +R L E L + + Sbjct: 390 LRVQRESVELLEERVKERTSALREANEKLEKLSNTDSLTGLNNRRSLDELLAMEVKRTCR 449 Query: 174 ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVA 229 L+ M++DID FK+ ND +GH+ GD L A I +V R GGEEF V Sbjct: 450 TGAPLSAMMMDIDRFKAFNDTHGHQVGDACLKAVAGVIASTAQRPSDVVGRYGGEEFCVL 509 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 +P ++AE+IR VE FT + + +T+SIGV +D L+ Sbjct: 510 LPDTPLDGAQIIAERIRAAVENLDFTVSGQRVPVTISIGVSELTYC---ASDSGKALVEA 566 Query: 290 ADTCLYRSKKDGRNRTSTM 308 AD LY +K GRN Sbjct: 567 ADEALYSAKSAGRNCVRLA 585 >UniRef50_A8GAZ5 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GAZ5_SERP5 Length = 482 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 181/314 (57%), Gaps = 13/314 (4%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPR----FKAEQMMPAIALIVSVIASVVIGGAGSLA 60 WFSEQFST +L++P +L L R ++ MP +AL+ S++ SV IGG G++A Sbjct: 158 WFSEQFSTNLLLLPVLLAAPRLKQLLRMQINWQLRASMPLLALLFSLVFSVYIGGPGAIA 217 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIV-LVANSVIDISVGSPFSI-PQMFSARLGI 118 FP+PAL+WCAVRY LLT +TG EI + AN ++ + + + + SARLGI Sbjct: 218 FPIPALLWCAVRYQLFTVTLLTLLTGMTEISSISANLMLYETPNNHIAFLDTLMSARLGI 277 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHL 175 A + + P++++ S+A L++++ A+ DFLT V +R+ L L K + + Sbjct: 278 AMLVMGPLILASSIAVNRKLLRRLEHSANHDFLTGVLARNALTRKAGELLEHKHKSKEAV 337 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 +++L+DID+FK IND +GH GD+VL+ FA +++ + L R+GGEEFA+ +P Sbjct: 338 SLLLIDIDHFKQINDTHGHLVGDQVLASFAHIVRRELRHDQLFGRLGGEEFAIMLPRALA 397 Query: 236 VDGLLMAEKIRKGVELQP-FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 G+ +AE +R+ V+ + L +T+S+GV S + +LM AD L Sbjct: 398 AQGVALAEHLRQLVQKADLLPTGKVPLNITISVGVASL---GMNEVKSLEQLMNMADIAL 454 Query: 295 YRSKKDGRNRTSTM 308 YR+K GRNR + Sbjct: 455 YRAKSQGRNRVESF 468 >UniRef50_A8V0B5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V0B5_9AQUI Length = 463 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 12/233 (5%) Query: 79 CLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSL 138 L+TF+ + ++ S + + I + S I + +++ FSV Sbjct: 239 YLITFIPVFNLNNHLMGYLVRYSKDNTYPI-ILKSFYTNITLSFLLAVILGFSVYIFLKD 297 Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHE 195 +++ ++ D LT +Y++ E L+ + + + L++++ DID+FK IND YGH+ Sbjct: 298 LEKFRYLSETDRLTGLYNKGKFNEVLQREIQRAKRYKRPLSLIIFDIDHFKKINDTYGHK 357 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD+VL A+ I+K + AR GGEEF + P N +AEK+R+ VE F Sbjct: 358 VGDEVLKALAKLIKKNIRKTDFAARWGGEEFVILAPETNVEGAKKLAEKLRQAVETYKFP 417 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 K +T+S+GV + +V AD LY++K+ GRNR Sbjct: 418 TVGK---VTISLGVAQLEP-----DEKPEDFIVRADMALYKAKEGGRNRVEIA 462 >UniRef50_D0FTB2 Conserved uncharacterized protein YneF n=3 Tax=Erwinia RepID=D0FTB2_ERWPY Length = 464 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 120/312 (38%), Positives = 184/312 (58%), Gaps = 12/312 (3%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKA----EQMMPAIALIVSVIASVVIGGAGS 58 + WFSEQ ST +L++P M++L LP+ A ++P + LIV++++++ +GG GS Sbjct: 150 SSWFSEQMSTSILLLPLMISLPRRQQLPQLAAALRDSSVLPLLTLIVTIVSAIWLGGGGS 209 Query: 59 LAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLG 117 L FPLPAL+WCA+ Y VTC LT +TG EI+LVA +V++I G F I + SARLG Sbjct: 210 LLFPLPALLWCAISYPLFVTCFLTMLTGISEIILVAGNVLNIQGKGDLFRIDSLSSARLG 269 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH--- 174 +A M I P++VS S + L+ ++ RAD+DFLT +RSGL L S + + Sbjct: 270 VAAMLIGPLIVSLSTLSNKKLVARITRRADYDFLTGALTRSGLSTKLDSLVTGRNRQQGF 329 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 +++DID FK IND +GH GD VL+ A +++ + LV RMGGEEF + + + Sbjct: 330 IGAALVIDIDRFKDINDTWGHAAGDYVLAKTAECLREGLSPSTLVCRMGGEEFLILIQGM 389 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 L+A ++R+ VE + L +TVSIG+ S ++ + ++ ++ AD Sbjct: 390 TQPRSSLLANRLRQNVENNKIIFNGHDLSVTVSIGISSLN---ISNVNSLDESIMRADEQ 446 Query: 294 LYRSKKDGRNRT 305 LY +K GRN+ Sbjct: 447 LYIAKSSGRNQV 458 >UniRef50_C6CM30 Diguanylate cyclase n=1 Tax=Dickeya zeae Ech1591 RepID=C6CM30_DICZE Length = 470 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 120/310 (38%), Positives = 181/310 (58%), Gaps = 6/310 (1%) Query: 2 LADWFSEQFSTGVLIVPCMLTLA--IPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSL 59 +WFS+QF T VL +P +LTL IP LP + +P + L+VS++ + ++G L Sbjct: 159 FLNWFSDQFYTAVLFLPLLLTLRSQIPLQLPMLRLSDALPLLLLLVSIVVAPLLGPVAIL 218 Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLGI 118 AFPLPAL WCA+ Y + L+T GA E++L A V P+ + Q+ AR+GI Sbjct: 219 AFPLPALTWCAIVYPLWLIRLITLCVGATELILTAEHVYAFYSPQDPYFMHQIIIARIGI 278 Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHL 175 A P+M++ + I L ++ +A DFLT SR G EAL Q + Sbjct: 279 AATIFSPLMMATNARTIRQLNARLLQQASHDFLTNTLSRYGFTEALTTHGQSVKSQHDAV 338 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 +ML+DID+FK+IND++GH+CGD++L A+ IQ+ V +GLV+R+GGEEFAV + NP Sbjct: 339 NIMLIDIDHFKNINDSFGHDCGDEILRQVAKVIQQAVSAQGLVSRIGGEEFAVVCFNYNP 398 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 +A+ +R+ ++ F + Q+ + +TVSIG+ S L D ++L AD LY Sbjct: 399 SAFYRLADSLRQTIQQTVFLFNQQPVPVTVSIGIAHAPTSGKYLVDTVHELFPLADKNLY 458 Query: 296 RSKKDGRNRT 305 +K++GRNRT Sbjct: 459 TAKREGRNRT 468 >UniRef50_C6RK39 Diguanylate cyclase n=2 Tax=Acinetobacter radioresistens RepID=C6RK39_ACIRA Length = 445 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 153/319 (47%), Gaps = 17/319 (5%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQ--------MMPAIALIVSVIASVV 52 + WFS + +LI+P +L L + + ++P L+ S+ S Sbjct: 130 IFGYWFSAELQNAILILPLILNLPYQKGIHQIFRPADGPYSFLHILPIFVLLFSLSLSYY 189 Query: 53 IGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 G G++ +P+ ALIWCA+ Y L+T ++ +++ + + + +M Sbjct: 190 DSGPGAILYPIAALIWCALNYRHFTVALITSISCFYIAFFMSDKYLTLYPEQYYL--EMI 247 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSL 169 S R GI TMAI P+ VS + L++++ D LT +R L Sbjct: 248 SLRFGIITMAIAPLTVSSINRIRSQLIRELQHHVAHDELTASLTRRQFMRSAHLLLRQRT 307 Query: 170 KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 +++Q L V++LDID+FK IND YGH+ GD+ L A I++ + L R+GGEEFA+ Sbjct: 308 QESQSLAVLMLDIDHFKLINDKYGHQAGDEALRACAAVIRRSLRGYDLFGRLGGEEFAIV 367 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMV 288 + V P + +AE+IR+ ++ +T + +SIG+ + + L+ Sbjct: 368 LLDVGPAEAFEIAERIRETLKTHIIQLDAETQFSIRISIGLTLFNPAVPH---NIEALLH 424 Query: 289 EADTCLYRSKKDGRNRTST 307 +AD LY +K+ GR+R Sbjct: 425 KADLALYEAKRSGRDRVVI 443 >UniRef50_D0S942 Response regulator n=2 Tax=Acinetobacter RepID=D0S942_ACIJO Length = 476 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 83/318 (26%), Positives = 150/318 (47%), Gaps = 15/318 (4%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIPGVLPRFK---------AEQMMPAIALIVSVIASVV 52 W++ + + ++P MLT L ++P +++++SV + + Sbjct: 164 FYIWWTGEVLNCISLLPLMLTFPAAKKLKYLWNNRRQCETQFVDVLPLLSVLISVACTHL 223 Query: 53 IGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 G G+L FPL LIW A+ Y ++ + V + + IS + + Sbjct: 224 FFGPGALLFPLAGLIWAALSYNLFYVSIINSLVCFVTYH--SLTTYYISRTADNFLATSI 281 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ- 171 S R+G+ + I P+++ + L K+V A+ D LT V +R + ++ + Sbjct: 282 SVRIGLCMLMIAPLLLCIVSRNRHDLYKEVLYLANHDPLTHVGNRRFFFTQTENLLKENL 341 Query: 172 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + +++++LDID+FK +ND YGH GD +L FA ++ + ++ L ARMGGEEF V + Sbjct: 342 VKSMSIIVLDIDHFKKMNDQYGHYIGDVLLQSFATTVKSNLREQDLFARMGGEEFVVVLN 401 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + ++ ++AE+I + V L +TVS+GV L + L+ AD Sbjct: 402 NTTEIESQIIAERICRAVATSKTQVAHAVLSMTVSLGVVH---QVLPTQNSLQSLLNRAD 458 Query: 292 TCLYRSKKDGRNRTSTMR 309 LY++K GRN+ Sbjct: 459 RALYQAKTLGRNQVQLAS 476 >UniRef50_D2C311 Diguanylate cyclase n=1 Tax=Dickeya dadantii Ech586 RepID=D2C311_DICD5 Length = 471 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 177/311 (56%), Gaps = 7/311 (2%) Query: 2 LADWFSEQFSTGVLIVPCMLTLAIPGVLP---RFKAEQMMPAIALIVSVIASVVIGGAGS 58 +WFS+QF T VL +P +LTL L + +P + L++S+ + ++G Sbjct: 159 FLNWFSDQFYTAVLFLPLLLTLQSRIPLHLPASLQMADALPLLLLLLSICIAPLLGPVAI 218 Query: 59 LAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS-VGSPFSIPQMFSARLG 117 LAFPLPAL WCA+ Y + L+T GA E+++ A V + P + Q+ AR+G Sbjct: 219 LAFPLPALTWCAIVYPLWLIRLITLCVGATELIMTAEHVYALYNPQDPMFLHQVVIARIG 278 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQH 174 IA P+M++ + I L ++ +A DFLT SR G EAL Q Sbjct: 279 IAATIFSPLMMATNARTIRQLNARLLRQASHDFLTNTLSRYGFTEALSTHDQNIKSQQDA 338 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 + +ML+DID FK+IND++GH+CGD++L A IQ+ V +GLV+R+GGEEFAV + + Sbjct: 339 VNIMLIDIDNFKNINDSFGHDCGDEILRQVANVIQRTVSAQGLVSRIGGEEFAVVCFNYS 398 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 P +A+++R+ ++ F + Q+ + +TVSIG+ + + L D ++L AD L Sbjct: 399 PPAFYRLADELRQTIQHTVFLFNQQHVPVTVSIGIAHAQVAGKHLVDTVHELFPLADKNL 458 Query: 295 YRSKKDGRNRT 305 Y +K++GRNRT Sbjct: 459 YTAKREGRNRT 469 >UniRef50_C6DKF8 Diguanylate cyclase n=5 Tax=Pectobacterium RepID=C6DKF8_PECCP Length = 489 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 145/320 (45%), Gaps = 17/320 (5%) Query: 2 LADWFSEQFSTGVLIVPCML-------TLAIPGVLPRFKAEQMMPAIALIVSVIASVVIG 54 DWFSEQ TG+++ L L + P+ E + P + I+ ++ S+ Sbjct: 167 FMDWFSEQLGTGIILAFFFLRGKDILRALRNIPLCPKHIRENIFPFLVFIIFLLVSLFFQ 226 Query: 55 GAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVAN--SVIDISVGSPFSIPQMF 112 A + + L CA Y+ + LL +TG + L N ++ S + + Sbjct: 227 DASLITLSVIPLTLCAFNYSFPIMSLLCAITGVILNYLYINQVGILINSNSEAYINSFLT 286 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP----S 168 +ARL IA + + + VS V+ L+K + + D LT ++R L Sbjct: 287 TARLNIAMLIMAMLSVSHFVSMNRRLIKIIESNSLKDALTNTFNRRAFLSMLNGRQGLLM 346 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 K+ + LT++ LDIDYFK +ND YGH GD++++ FAR + + ++ R GGEEF + Sbjct: 347 NKRKRQLTLLFLDIDYFKQVNDTYGHASGDELIASFARMLSANIRPSDILCRWGGEEFVI 406 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 A + MAE +R E P + + T+SIGV + + L+ Sbjct: 407 AAYDLTAEQSAAMAETLRHLTESTPLVLSDGREIRFTISIGVVTFP---QYEGGNTYDLI 463 Query: 288 VEADTCLYRSKKDGRNRTST 307 AD LY++K GRNR Sbjct: 464 GLADEQLYKAKAQGRNRVCL 483 >UniRef50_B7GZC2 Uncharacterized protein yneF n=10 Tax=Acinetobacter RepID=B7GZC2_ACIB3 Length = 473 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 94/316 (29%), Positives = 148/316 (46%), Gaps = 17/316 (5%) Query: 2 LADWFSEQFSTGVLIV--------PCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVI 53 W + + +L++ + + G KA +P A+++S+ S Sbjct: 159 FGYWVTSELQNALLLLPIILNIPPYLKIKTHLKGNRIYIKAIDFLPLFAVLISIGVSYYD 218 Query: 54 GGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFS 113 G GSL +P+ ALIWCA+RY P + L+T T A I V+ + + S S Sbjct: 219 SGPGSLLYPIAALIWCAIRYKPIIVALITSFTSAYIIYHVSGHYLLLYPQDYLSNN--IS 276 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLK 170 R+G+ M + P+ VS A + L++++ D LT +R + L+ K Sbjct: 277 IRIGLIMMTVAPLTVSSISALHSELIQKLQHAIAHDELTSSLTRRQFLQSVRLLQEKVQK 336 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + + +LD+D+FK +ND+YGH GD+ L IQ I+ L+ R GGEEFA+ + Sbjct: 337 ENKTSAFFMLDVDHFKKVNDSYGHLIGDRALQTCVTTIQNILHPHDLLGRFGGEEFAIFI 396 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 P +AE+IR + QP K +++ VSIG+ SY L E Sbjct: 397 PDTTREAAFELAERIRIQISQQPIYVYGKLPIFVQVSIGISLYSPSYHR---SIESLFKE 453 Query: 290 ADTCLYRSKKDGRNRT 305 AD LY++K+ GRNR Sbjct: 454 ADDALYQAKRQGRNRV 469 >UniRef50_B8FCK6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCK6_DESAA Length = 301 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 13/292 (4%) Query: 20 MLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTC 79 MLT V E+ + A+A I + + + G + + I + Sbjct: 20 MLTARGHEVTVATNGEEGLEAVATIKPDLILLDLIMPGMDGYAVCEKIKGSPATADIPVI 79 Query: 80 LLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLM 139 +LT + V + V PF ++ + + + ++ Sbjct: 80 MLTSKAETADKVRGLEAGASDYVTKPFEEGELVAR-------VNTHLRIKELYESLQETN 132 Query: 140 KQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHEC 196 +Q+ A+ D LT +Y+ +A+ +++ + L+ +L DID+FK ND YGH+ Sbjct: 133 RQLQELANRDGLTGLYNHRYFQDAMTKDFQRAMRYHESLSCVLCDIDFFKKFNDTYGHQT 192 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD VLS AR ++ + D L AR GGEEFA+ + ++AE++R+ VE F Sbjct: 193 GDIVLSTLARIVEDSLRDTDLAARYGGEEFALVLYHTPAAAAFMVAERLRESVEQHEFIA 252 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 +L +T+S+GV + + D L+ AD LY++K++GRN+ + Sbjct: 253 NDLSLSVTISVGVATYPHPDIP---DHKTLIECADKALYKAKENGRNQVISF 301 >UniRef50_Q4KDW8 GGDEF domain protein n=6 Tax=Pseudomonas RepID=Q4KDW8_PSEF5 Length = 315 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 95/183 (51%), Gaps = 4/183 (2%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKS 187 V+ + A+ +Q+ + D LTQ+Y+R + L+ + + +++LDID+FKS Sbjct: 137 VAINSLALQKANQQLQHLSRTDHLTQLYNRGHWEQRLQFEYSRHGSSIALLMLDIDHFKS 196 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND +GH+ GD V+ + I + V D + R GGEEFA+ +P + +AE++R+ Sbjct: 197 INDRHGHQAGDAVIKRVSELIHQHVRDSDVAGRYGGEEFAILLPHTDLAGARTLAERLRQ 256 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 VE Q + + T+S+G+ D L+ AD LY SK+ GRNR ST Sbjct: 257 SVEEQEVIHNGQAIAFTISLGIACLD----RPARDHRCLIEWADQALYASKRAGRNRVST 312 Query: 308 MRY 310 Sbjct: 313 YAP 315 >UniRef50_B8DLP9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLP9_DESVM Length = 730 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 8/189 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVML 179 I + +++ A D LT + +R EAL+ + + L ++ Sbjct: 527 IVYCGIITDTTEHREAQERLRQLATTDGLTGLANRRRFLEALEHEVQRHRRYGTPLALIS 586 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +D+D FK +ND +GH GD+VL A + V D V R+GGEEFAV +P P + + Sbjct: 587 IDVDRFKRVNDTWGHAVGDEVLRALAGICRAEVRDVDTVGRIGGEEFAVLLPDTAPEEAM 646 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE++R GVE P L +T+S+GV + D + L+ EAD LYR+K Sbjct: 647 AVAERLRAGVEAAPLLTTAGPLTVTLSLGVSASPPC-----DGADTLLREADRALYRAKA 701 Query: 300 DGRNRTSTM 308 GRNR Sbjct: 702 GGRNRVERA 710 >UniRef50_C6WYA7 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYA7_METML Length = 591 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 97/190 (51%), Gaps = 8/190 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVML 179 + I S + L +++ +A DFLT V +R E + + ++ L+ + Sbjct: 404 LRMIGTSTDITERKQLEEELKRQARIDFLTGVSNRRYFMEQAEQEIQRTSRYDTPLSFFM 463 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LDID FK +ND YGH+ GD VL A ++ + + ++ R+GGEEFA+ +P + Sbjct: 464 LDIDLFKQVNDTYGHKSGDIVLKRMASVCRETLREIDIIGRVGGEEFAILLPETDKAQAA 523 Query: 240 LMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE++R + + + + TVSIGV S +S D+ + L+ AD LY++K Sbjct: 524 EVAERLRSVLADEKVPTEAGAPIQFTVSIGVASRVSSQ----DNIDMLLNLADEALYQAK 579 Query: 299 KDGRNRTSTM 308 K GRNR Sbjct: 580 KYGRNRVYIA 589 >UniRef50_B4U6Y8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6Y8_HYDS0 Length = 772 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 11/187 (5%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLL 180 + + L + ++ D LT +Y+R L L+ + + + L++++ Sbjct: 593 VAVFTFVDITKEKELSDMLLKQSTEDPLTGIYNRRYLENKLEEYVKLAKRHDRPLSLIMF 652 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND++GH+ GDKVL A+ + + + + + AR GGEEF + P D + Sbjct: 653 DIDFFKHINDSFGHDVGDKVLKAIAKVVSENIRNTDIFARYGGEEFVIIAPETTKEDAKI 712 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AEK+R + F + +T S GV S D L+ AD LY +KK Sbjct: 713 LAEKLRSLIRNLHFEEG---INVTCSFGVASLEKH-----DTKETLLKRADEALYEAKKT 764 Query: 301 GRNRTST 307 GRN+ Sbjct: 765 GRNKVVV 771 >UniRef50_C1SIQ7 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIQ7_9BACT Length = 312 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 61/292 (20%), Positives = 120/292 (41%), Gaps = 15/292 (5%) Query: 18 PCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQV 77 P L A+ G + +P + L+ + F + + Sbjct: 30 PYGLAFAMSGKEALEYLVKNVPDMVLL-------DVMMPDMDGFEVCKTLHARAETKGIP 82 Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 +T + +IV V PF+ ++ + ++ + Sbjct: 83 VIFITAKSEPEDIVKGFQMGGVDYVTKPFNEAELLMRINTHMELKRARDLLEEKNKELIE 142 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGH 194 ++ A D LT + +R + L + + ++ ++++ DID+FK +ND YGH Sbjct: 143 AYDKIEHLALTDTLTGIANRRNITNMLGKEAARCKRNKGKFSLIMCDIDFFKRVNDTYGH 202 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD VL + IQ+ + ++ +VAR GGEEF + +P + + + +AEK+R + Sbjct: 203 DAGDYVLKTISHVIQQALREQDIVARWGGEEFLIVLPETDAGNAVAVAEKLRTAIGNTEM 262 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +++ + +T++ GV S K + +AD LY K+ GRN+ Sbjct: 263 SYEGISFSVTMTFGVSEYDVSL-----GIEKSIKKADDALYEGKQTGRNKVV 309 >UniRef50_B5JX81 Diguanylate cyclase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX81_9GAMM Length = 384 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 140/335 (41%), Gaps = 34/335 (10%) Query: 1 MLADWFSEQFSTGVLIVPCMLTLAI---------------PGVLPRFKAEQMMPAIALIV 45 ML + + + + +IV +L L Q A+ +++ Sbjct: 53 MLGNGLNNEVANTAIIVILVLAACCGIGFILGFKADATAWTSKLYAHICIQFFVAVNMVL 112 Query: 46 SVIASVV--IGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV- 102 + A V + G + L I R T A+ I+ + SV Sbjct: 113 AYYAGVFSVVSGVALVGGSLTGFILFNERVVYGGLFTGALATLALIILSALEVIPYASVI 172 Query: 103 ---GSPFSIPQMFSARLGIATMAICPIMVSF---SVAAINSLMKQVALRADFDFLTQVYS 156 G+P + L + ++V+ ++ +V + D LTQV + Sbjct: 173 ETNGTPLHHNATWLILLLGLSTPYIGLLVAMNSSAIRRWRQRESEVRQLSTTDPLTQVAN 232 Query: 157 RSGLYEALKSPSLKQTQH----LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV 212 R L E L + + L+++++D+D+FKSIND +GH GD+ L V AR +++ Sbjct: 233 RRHLLERLNLEISRCERSGHSELSLLMMDLDHFKSINDEHGHLFGDEALRVTARVLREQS 292 Query: 213 GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGS 271 + LV R GGEEF + +P P L +AE+ R+ +E + L++T SIG+ + Sbjct: 293 RNTDLVGRYGGEEFCLLLPDTGPQGALQIAERCRQALEQADIDREDGEVLHITTSIGLAT 352 Query: 272 GRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + + D L+ AD LY++K+ GRNR Sbjct: 353 YQ-----MGDTNESLLHRADEALYQAKEQGRNRIV 382 >UniRef50_Q30QX5 Diguanylate cyclase n=2 Tax=Proteobacteria RepID=Q30QX5_SULDN Length = 564 Score = 259 bits (663), Expect = 9e-68, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 133/326 (40%), Gaps = 29/326 (8%) Query: 10 FSTGVLIVPCMLTLAIPGVLPR-------FKAEQMMPAIALIVSVIASVVIGGAG----- 57 F+ G+++ P L L I + K + ++L + + A Sbjct: 240 FNFGMMLSPIFLALFIQTIFKTKEQYINEHKLLNSIIFVSLANFIYGLIDFNSALEIMSS 299 Query: 58 SLAFPLPALIWCAVRY-----TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 SL + L +W ++R L+ + V + I+ + S Sbjct: 300 SLTYALIVFMWISIRICKKGDKLIKIFLIAHTLYLIFSVYALLYYLGIADANYISSHGTS 359 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQ-----VALRADFDFLTQVYSRSGLYE---AL 164 + A + + F + ++ + L A D +T++Y+R E + Sbjct: 360 IGLIIEAMLLSYLVSYKFIIMEQEKEEEKLKQIELKLLASTDSMTKLYNRRYFTEISAKV 419 Query: 165 KSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 S ++ +L+++++DID FK +ND YGH+ GD+VL +R + + +V R GGE Sbjct: 420 LHLSKREKNNLSILMIDIDRFKVVNDTYGHQFGDEVLIALSRLLVEHQRKSDIVCRYGGE 479 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDF 283 EF + +P+ + D +A+KIR VE K T+SIGV + DD Sbjct: 480 EFVILLPNTSLKDATNIAQKIRILVESLTMEAPTNKEFKFTISIGVAQID---VEHEDDI 536 Query: 284 NKLMVEADTCLYRSKKDGRNRTSTMR 309 + AD LYR+K GRNR Sbjct: 537 KFALKRADDALYRAKNSGRNRVCAEE 562 >UniRef50_Q39ZK6 Response regulator receiver modulated diguanylate cyclase n=8 Tax=Geobacter RepID=Q39ZK6_GEOMG Length = 314 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 13/264 (4%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + + F ++ + +LT + V PF Sbjct: 51 LVLCDLEMPRMDGFRFLTMMRAREEFQDLPVIILTGREDRDTKIRGLEQGASDFVTKPFD 110 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 ++ + + + + + + + D LT +++R L E + Sbjct: 111 TGELVAR-------VRVQLKMKGLQDELKRSNEMLRTLSITDPLTHLHNRRHLMEMVDKE 163 Query: 168 SLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + ++ L++++LDIDYFK IND YGH+ GD+VL++ A +++ + L AR GGE Sbjct: 164 FQRSSRKGAPLSLVILDIDYFKKINDTYGHQEGDRVLTILADIVRRRLRSYDLAARYGGE 223 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EF + +P + L +AE++R V+ F L +T+S+GV + +S + + Sbjct: 224 EFVLLLPETPVQEALSIAERLRLEVQEHVFEGSLGGLVITISLGVATYPSS---RVESID 280 Query: 285 KLMVEADTCLYRSKKDGRNRTSTM 308 L +AD LYR+K+ GRNR M Sbjct: 281 SLFRQADEALYRAKQGGRNRVELM 304 >UniRef50_D1U434 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U434_9DELT Length = 1051 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 7/186 (3%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLD 181 + + + ++ A D LT +++R E + ++ ++ LT++++D Sbjct: 869 AVATIRDITERKATEARLHELATTDSLTGLFNRRRFMELAEREFMRTKRYQGALTMLMMD 928 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK +ND +GH GD+VL AR + + + ++ R+GGEEF V +P + + + Sbjct: 929 IDHFKRVNDTHGHGVGDEVLRELARISRTALRELDILGRLGGEEFGVLLPETDAGPAMEV 988 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 A+++R+ +E TL +TVSIG + + L+ AD LY +K+ G Sbjct: 989 AQRLRRAIEKASMATDAGTLRITVSIGAATSN----NDAETVETLLKRADVALYEAKQSG 1044 Query: 302 RNRTST 307 RN+ Sbjct: 1045 RNKVVA 1050 >UniRef50_A9WGU1 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A9WGU1_CHLAA Length = 324 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 7/282 (2%) Query: 28 VLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGA 87 V P + + AI I + + I + + + ++ + Sbjct: 45 VRPVTQGTAALTAIRTIRPDLVLLDIRMPDMDGYEVCQQLKADEETAQIPVIFISALDDV 104 Query: 88 VEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRAD 147 + V + PF ++ + +A + + + + + A A Sbjct: 105 EDKVRAFECGGVDYIAKPFQPLEVLARVRTHLALAQARKALEAANRELQRALAREAELAR 164 Query: 148 FDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D+LT VY+RS YE + + + + LT+ +LD+D+FK IND YGH GD+VL Sbjct: 165 MDWLTGVYNRSHFYELARHEFAIATRYERPLTMCMLDVDHFKQINDRYGHLVGDQVLRAV 224 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ + + + R GGEEF + +P+ N L +AE++R + + + T Sbjct: 225 AQTVAHQIRTADSIGRFGGEEFILLLPNTNLPSALTLAERLRVTIADLQVHTDRGIVTAT 284 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +S+GV ++ +L+ AD LY +K+ GRN Sbjct: 285 ISVGVAERQS----TDTTIERLIDRADRALYAAKRQGRNCVV 322 >UniRef50_A9C2H0 Diguanylate cyclase n=2 Tax=cellular organisms RepID=A9C2H0_DELAS Length = 496 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 169/325 (52%), Gaps = 18/325 (5%) Query: 1 MLADWFSEQFS--TGVLIVPCMLTLAIPGVLPRFKAEQ-----MMPAIALIVSVIASVVI 53 M+A WFS + T +L V L + + R + + ++P +AL +S ++ + Sbjct: 160 MMAMWFSSELMHMTLLLPVLLSLPAKLEPLSWRSQPFKQTAQALLPLLALAISESIAIYL 219 Query: 54 GGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFS 113 GG G+L+ +PA++ CA+RY V LL V+ A+++ + V+ S G+ FS Sbjct: 220 GGPGALSLTMPAMLLCAMRYRLFVVALLNLVSCAIKL-ATFSHVLFSSPGTEL--ETTFS 276 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLK 170 RLG+A ++I P+ V+ ++ A ++ ++ + D LT + +R+ E + + Sbjct: 277 FRLGLAMLSIGPLAVACTLMAFKDMLSKLRHAVNHDALTGLLARTSFLERAQRTLERLQR 336 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + Q +++LD+D+FK IND +GH GD+VL + + + + L+ R+GGEEFAV + Sbjct: 337 ERQSGAMLMLDLDHFKHINDRHGHAAGDRVLQEVSARLSQALRPHELIGRLGGEEFAVLL 396 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 P + V +A+++ + + T+SIG+G +Y L + L+ Sbjct: 397 PGADCVTARAVAQRLCEATREIRIDMNDGAAICPTLSIGIGCTNMAYPPLG--LSALLRM 454 Query: 290 ADTCLYRSKKDGRNR--TSTMRYGE 312 ADT LY++K GR+R + R GE Sbjct: 455 ADTALYQAKASGRDRYFVAGERPGE 479 >UniRef50_A8FZ07 Diguanylate cyclase n=2 Tax=Shewanella RepID=A8FZ07_SHESH Length = 298 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 19/284 (6%) Query: 43 LIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV 102 ++ + + +VI GA LA + +W VR P ++ + I++ + + Sbjct: 4 ILPVLGSGLVISGALLLAMAIAP-VWKIVRQLPTGGLRYSWGFLILLILIFIAGYVIYAK 62 Query: 103 GSPFSIPQMFSARLGIATM---AICPIMVSFSVAAINSLMK--QVALRADFDFLTQVYSR 157 SP Q+F + I ++ S S+ +M+ + D L +++R Sbjct: 63 FSPVQFSQLFDLVVPIIFFGGAIFVFVVCSLSLRTTRDIMQNYALKQENITDSLMGIFNR 122 Query: 158 SGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGD 214 L LK + + +Q L++ L+DID+FK +NDNYGH+ GD VL A+ I+ + + Sbjct: 123 RYLDRRLKDETERALNYSQPLSIFLIDIDHFKQVNDNYGHQVGDLVLKNIAQLIKHSLRE 182 Query: 215 KGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK------TLYLTVSIG 268 ++AR GGEEF V +P +AE++R VE T ++ ++ +TVSIG Sbjct: 183 SDVLARFGGEEFVVILPRTKDSTSYTLAERLRHVVEDFQLTLPEESDKDSLSISVTVSIG 242 Query: 269 VGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 V A D L+ AD LY++K++GRN+ T + G+ Sbjct: 243 VAGLNAQC----KDCQCLIENADRALYQAKRNGRNQVITSKSGK 282 >UniRef50_Q21HV6 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Alteromonadales RepID=Q21HV6_SACD2 Length = 301 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 59/260 (22%), Positives = 108/260 (41%), Gaps = 13/260 (5%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + + I G ++ +++ TG I+ + V P Sbjct: 48 MILLDIRMPGLSGLETLEILKSDEATRMIPVIMVSATTGDQSIIRALDLGAHDFVSKPIE 107 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 P + A + + + + K++ A D LT + +R ++ ++ Sbjct: 108 YPVL-------AARMRSALRLIQAKRDLEKANKELERLATRDPLTGINNRRSFFKLAEAE 160 Query: 168 SL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + + + +++LD D+FK IND YGH GD+ L Q + ++AR+GGE Sbjct: 161 LTKTIRHGRDIALLMLDADHFKMINDTYGHAAGDEALLTITEICQNACRESDILARLGGE 220 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EFA+ P N +AE+IR+ E + +T+SIG+ + S Sbjct: 221 EFAICCPDTNLEGAYAVAERIRQQCENTVIEHNSASFGITLSIGITTFVPSQ---DKSIT 277 Query: 285 KLMVEADTCLYRSKKDGRNR 304 +++ AD LY++K+ GRNR Sbjct: 278 EMLQRADNLLYQAKEMGRNR 297 >UniRef50_C6NZP2 Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZP2_9PROT Length = 570 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 136/314 (43%), Gaps = 21/314 (6%) Query: 11 STGVLIVPCMLTL------AIPGVLPRFKAEQMMPAIALIV-----SVIASVVIGGAGSL 59 G++ L L + G+ ++ A+AL+V + + + V A ++ Sbjct: 263 VLGLMFAARFLALKKHSPRTLRGIRWIGTLAVVIMALALMVDSQFVAAMVAFVCTTAFTI 322 Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIA 119 L ++ T L G + + + A +V P++ + A Sbjct: 323 GMFLLGILSVLRNQTSGRYFLFATFFGMLGVGVTALAVWGKIPFRPYTFHAAEFGLVIEA 382 Query: 120 TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLT 176 T+ + +S + + + A D LT + +R E S + + + ++ Sbjct: 383 TL--LALGLSNWMRENRDALYEAEQVARLDALTHLNNRRAFMELALPYASTAGRHERPMS 440 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 ++++DID+FKSIND YGH+ GD VL+ A ++ +VAR GGEEF + +P Sbjct: 441 LVMMDIDHFKSINDQYGHQTGDLVLTAVADLLKNFSRTSDIVARWGGEEFILLLPETGLK 500 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 + AE++R+ + + ++ LT S G+ + A+ F+K++ +AD LY Sbjct: 501 QAINHAERLRQAIAEFRIPVGETSISLTASFGIAAHVANL-----SFDKMIEQADVQLYE 555 Query: 297 SKKDGRNRTSTMRY 310 +K+ GRN+ Sbjct: 556 AKRSGRNKVCCSSA 569 >UniRef50_C1XLF8 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XLF8_MEIRU Length = 373 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 129/315 (40%), Gaps = 23/315 (7%) Query: 15 LIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASV-VIGGAGSLAFPL-------PAL 66 L++P + + + + +++IA ++ A+ L PA Sbjct: 58 LLLPMAVGFIALEFHLWRNPQNVRWVWQIALALIAIYEIVSLFYEAAYKLHQRDGITPAA 117 Query: 67 IWCAVRYTPQVTCLL---TFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAI 123 +W + Y L V +VL + + SP + L I Sbjct: 118 LWFPMVYLMAFNLLNRRQALRFSLVYLVLGLLAGAVGMLMSPSINVSSINTALQFTFSNI 177 Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLL 180 + + + A + Q+ A D LT + +R + + L+ + + + ++L Sbjct: 178 AYLALLYMFAYLRRHYAQMHQMAHTDALTNLTNRRAMQQKLEGELDRARRYNRPFALLLA 237 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D+FK IND YGH GD+VL A + + + + +AR GGEEF + P + L Sbjct: 238 DLDHFKQINDTYGHSVGDQVLREVAGRLAQHLRESDSLARWGGEEFLILAPETDLQQAYL 297 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +A+++ + P + + +T+S+GV R D L+ AD +YR+K Sbjct: 298 LAQRLLGAIRESPISG----VQVTLSLGVACYR-----QGDSIAALLSRADEAMYRAKAG 348 Query: 301 GRNRTSTMRYGEEVV 315 GRN+ E++V Sbjct: 349 GRNQIVLEEELEDIV 363 >UniRef50_A3J8Q2 Two-component response regulator protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3J8Q2_9ALTE Length = 379 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 125/321 (38%), Gaps = 26/321 (8%) Query: 9 QFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIW 68 +L P ML + K ++ P + L + ++ + G F AL Sbjct: 56 HIIETLLRAPVMLVALFTLFVHYTKKPKVDPGLLL---RVIALSVMGLSLSLFVAHALYS 112 Query: 69 CAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP-----------FSIPQMFSARLG 117 Y ++ F ++ V V Q+ Sbjct: 113 PDTLYQMSNVLMIGFFGVSILSVRGLEQWRTFFVIPLMLFFAALAIVDLEFKQLIPFLFD 172 Query: 118 IATMAICPIMVSFSVAAINSLM----KQVALRADFDFLTQVYSRSGL---YEALKSPSLK 170 M ++VS S++ + +Q+ A D LT + +R + E L + + Sbjct: 173 PLVMIFLGMVVSGSLSQLRRSEFLSRQQLKSLASTDQLTGLLNRHAIHKSLEQLVARHAR 232 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 +++L D+D FK +ND+YGH GD+VL A +Q V ++ R GGEE V + Sbjct: 233 HGHPFSLILGDLDKFKRVNDSYGHNVGDEVLIETANRLQDHVRAGDILCRWGGEELLVVL 292 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 P L +AEK+R + P T ++ T+S GV + + ++ A Sbjct: 293 PDTERDSALAVAEKLRCAIGEAPMTAGGHSIEQTISFGVTCYH-----NGEHIDTTIMRA 347 Query: 291 DTCLYRSKKDGRNRTSTMRYG 311 D+ LY +K+ GRNR ++ G Sbjct: 348 DSALYLAKQGGRNRVVSVEPG 368 >UniRef50_Q3ADQ4 Response regulator/sensory box protein/GGDEF domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ADQ4_CARHZ Length = 668 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 13/232 (5%) Query: 81 LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK 140 L +T + + A ++ GS + ++ + + + + L + Sbjct: 442 LCLITAVGQEMDWAERILHRMDGSQLPVLKIVKRLRTKSGEKLIETFI--DLTERKKLEE 499 Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECG 197 Q+ + D+LTQ Y+R E L+ + + +++LDID+FK++ND +GH G Sbjct: 500 QLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHFKNVNDRFGHAAG 559 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL A I+ + +AR GGEEF + +P+ +AE++R+ + + Sbjct: 560 DLVLKTLANLIKNRIRQTDCLARWGGEEFVILLPNTPVEKAAGLAEELREQLSMLEIPGV 619 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 +T S GV D + L++ AD LY +K GRN Sbjct: 620 G---RVTASFGVTGYCP-----GDTLDTLLMRADQMLYTAKASGRNCVRFSE 663 >UniRef50_C6WYA9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYA9_METML Length = 548 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 8/190 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVML 179 I I V ++ + L ++ +A D+LT++ +R E + + ++ + + + Sbjct: 362 IRMIGVHANIHSRKLLELELNQKAHIDYLTELNNRGHFMEQAEKELSRSQRYQKDMAMFM 421 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +DID+FK IND++GH+ GD VL A ++ + + ++ R+GGEEFA+ +P N + L Sbjct: 422 MDIDFFKKINDSHGHKIGDIVLKKLADVCRQTLREVDIIGRIGGEEFAILLPETNRAEAL 481 Query: 240 LMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE++R V + + TVSIGV S ++ D+ + L+ AD LY++K Sbjct: 482 EVAERLRLAVADSKVPMKDGLPVQYTVSIGVSSVASA----DDNIDMLLSRADQALYQAK 537 Query: 299 KDGRNRTSTM 308 + GRNR Sbjct: 538 QSGRNRVCAA 547 >UniRef50_A8ZX32 Diguanylate cyclase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX32_DESOH Length = 396 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 129/335 (38%), Gaps = 34/335 (10%) Query: 4 DWFSEQFSTGVL----IVPCMLTLAIPGVLPRFKAEQMMPAIALIVS------------- 46 +WF +L V +L I R + + P + I+ Sbjct: 62 EWFDRSIVIALLSLYGFVFVLLLYFILAAFHRRRQKSSWPLMENIMFGSYVVIVCAGSWF 121 Query: 47 -----VIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFV----TGAVEIVLVANSV 97 ++ + S++ L + + Y L+ F+ +G + + Sbjct: 122 TGTYYTFGALFLFFGASISSSLADIRKVRLAYLASFGALVAFIVMDSSGMFRHAPLFTRI 181 Query: 98 IDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSR 157 GSP + + ++ + I + + + D LT++ +R Sbjct: 182 PLHPDGSPLPVWFGVQVFITVSLTIMLYITI-VTFKRWGVREDVYRKMSTVDGLTRLTNR 240 Query: 158 SGLYEALKSPS----LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVG 213 E + + + H++ +++DID+FK+IND YGH GDKVL A + + Sbjct: 241 RTFIERSEKELSSGQRRPSSHISCIMIDIDHFKAINDTYGHAAGDKVLVKIATILTEKAR 300 Query: 214 DKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGR 273 V R GGEEFA+ +P+ + +AE+ R + + +T S GV S Sbjct: 301 PTDEVGRYGGEEFAMLLPATTLAGAVKVAERQRASIANAEIIVDGNIIQVTASFGVASCP 360 Query: 274 ASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + + D+ N+L+ AD LY +K+ GRNR Sbjct: 361 SDDI---DNINELLKTADVALYEAKRAGRNRVVAA 392 >UniRef50_A8GES9 Diguanylate cyclase n=2 Tax=Serratia RepID=A8GES9_SERP5 Length = 500 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 162/321 (50%), Gaps = 19/321 (5%) Query: 2 LADWFSEQFSTGVLIVPCMLTLA----------IPGVLPRFKAEQMMPAIALIV----SV 47 LA W S +F+ + ++P +L V R + + IA+++ + Sbjct: 173 LALWLSSEFTNYITLMPFILAFPRDWKGYLRSIFQAVTLRSQWPNTVRKIAVLLLLLLAC 232 Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 S++IGG G++ FP+P L+W A+ ++ T ++ + + L + + + Sbjct: 233 FGSILIGGPGAVIFPMPILLWLAMSFSLFST-MIAVLVYVLWCHLAIDLGLITTNLDMKM 291 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 + S RLG+A +A+ PI V+ A N+L++++ A+ D LT V +RS + Sbjct: 292 LQNTVSMRLGVALLALGPIAVASMNFARNALLQRLEHVANHDALTHVLTRSAFMQRGTRL 351 Query: 168 SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 ++ + + +M+LDIDYFKSIND +GH GD L F R I + D L RMGGEEFA Sbjct: 352 VSQKGERICIMMLDIDYFKSINDRFGHAGGDAALLSFTRAITGDLRDNDLFGRMGGEEFA 411 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKL 286 + P D L +AE++R VE++ L +TVSIG+ + + + L Sbjct: 412 IVAPIAQQQDALSLAERLRHRVEIESINMPAGAALQITVSIGMVTCIGG---SGQNLDNL 468 Query: 287 MVEADTCLYRSKKDGRNRTST 307 + AD +Y++K GRNR +T Sbjct: 469 LKIADLAVYKAKNSGRNRVAT 489 >UniRef50_B4VVS2 GGDEF domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VVS2_9CYAN Length = 314 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 107/264 (40%), Gaps = 7/264 (2%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + + + L + T L+ V ++ ++ PF+ Sbjct: 55 LIIMALTMPKMSGLELCDYLKSPPPLTTSPIILMRTVREQEYLIEAFEKGAADTITHPFN 114 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 ++ + + ++ V L + A D LT +++R Sbjct: 115 PAEILARVRTHLELKQTQKQLNRLVKEHEKLANLLRKLAITDPLTGLWNRRHFLTVAYQE 174 Query: 168 ---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + + + ++++++DID+FK IND YGH GD+VL A+ I + + R GGE Sbjct: 175 FNRASRYKRFMSILMIDIDHFKQINDEYGHTMGDEVLKGVAKSIVGSLREADYCGRFGGE 234 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EF +P + + +AE++RK +E K + +TV++GV S + + Sbjct: 235 EFVTLLPETDSSGAVRVAERLRKRMEQITIGIGDKQVQMTVTVGVASYQ----LDDANIE 290 Query: 285 KLMVEADTCLYRSKKDGRNRTSTM 308 ++ A+ LY +K G NR + Sbjct: 291 VIIQRANKALYHAKSQGYNRVALH 314 >UniRef50_B3E6Y7 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ RepID=B3E6Y7_GEOLS Length = 459 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 8/187 (4%) Query: 129 SFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYF 185 + + + +++ A D LT + +R E ++ + + +LLDID F Sbjct: 274 NRFLKELREAQEKLVEMATIDSLTGLLNRRAGLERVEEELSRHQRSERAFACLLLDIDRF 333 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K IND YGH+ GD VLS F +++ V +V R GGEEF + +P +P AEKI Sbjct: 334 KKINDTYGHQAGDAVLSEFGATLRRHVRKHDIVCRYGGEEFLLLLPDTSPSAARTTAEKI 393 Query: 246 RKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 R P + + + +T SIG+ + + ++ AD LY +K GRNR Sbjct: 394 RAVTAATPIMFAGRQIAVTTSIGISMMQG-----DETAKAMIARADAALYEAKNSGRNRV 448 Query: 306 STMRYGE 312 E Sbjct: 449 VCAEANE 455 >UniRef50_B3EBI3 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ RepID=B3EBI3_GEOLS Length = 307 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 8/189 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLL 180 + V ++ A D LT V++R L L+ + + L++M+L Sbjct: 117 AIYITVQDVTDFVIYEHKLIQMAKVDGLTGVFNRRYLDTRLQEELERSRRHGNPLSIMML 176 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND +GH CGD L + + ++V ++ R GGEEF +P + L+ Sbjct: 177 DIDHFKEINDTHGHICGDYTLRKISELLLELVRTSDILGRYGGEEFCCILPETSFEQALV 236 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE+ R V F+ +TVSIGV L D + ++ AD LY++K+ Sbjct: 237 LAERCRTQVAASQFSCTDHQSRVTVSIGVT-----DLHRDDTLDSIIKRADDALYQAKRT 291 Query: 301 GRNRTSTMR 309 GRNR + Sbjct: 292 GRNRVCSSP 300 >UniRef50_B8DLV9 Diguanylate cyclase n=4 Tax=Desulfovibrio vulgaris RepID=B8DLV9_DESVM Length = 381 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 15/284 (5%) Query: 31 RFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEI 90 R +AL + V GG F + I+ V + + GA+ + Sbjct: 83 RHVLPSTALVLALFTLSLYMVSHGGVEGSGF-VWLFIFPPVVMLTFGLSIGILLMGALLL 141 Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS------LMKQVAL 144 + A + Q F R +A + ++ L +Q+A Sbjct: 142 GVGAILFLPGDPFLYADYSQAFRIRYMLALLCCGIFAGLAEYTRRHTQRLLILLTQQLAE 201 Query: 145 RADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVL 201 A D LT + +R L E L+ + + + L++ + DID+FKS+ND YGH+CGD VL Sbjct: 202 SARTDELTGLANRRALCERLEYEQVRARRTGRPLSIAICDIDHFKSVNDCYGHQCGDLVL 261 Query: 202 SVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL 261 A + + + + R GGEEF + +P + +AEK+R VE +++ + Sbjct: 262 QSVAGLLHDNLRHQDTICRWGGEEFLLLLPETDEAGAARLAEKLRSLVEAMEYSYHGIPV 321 Query: 262 YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 +T+S GV + D + + +AD LY +K+ GRNR Sbjct: 322 SVTLSFGVHTCGPEG-----DIDYHIRKADQKLYLAKEQGRNRV 360 >UniRef50_C6C0X5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0X5_DESAD Length = 779 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 7/187 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLL 180 + V ++ A D LT + +R E+ + + + + L+++++ Sbjct: 587 WVVGTFRDVTERKEAEDKLRKLATTDSLTGLSNRRFFMESAEDALERTRRYGRDLSLLMM 646 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFK++ND YGH+ GD VL ++ KI+ + + R+GGEEF++ +P L Sbjct: 647 DIDYFKTVNDMYGHDAGDDVLKGLSKTGLKILRNIDVFGRIGGEEFSILLPDTGLDGATL 706 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE++R +E + +L +TVSIGV + T +L+ AD LY +K+ Sbjct: 707 VAERLRAEIETTKMNTRSGSLNITVSIGVATYS----EHTKTLEQLLKAADIGLYAAKEA 762 Query: 301 GRNRTST 307 GRN+ Sbjct: 763 GRNQVKV 769 >UniRef50_C6BW86 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BW86_DESAD Length = 555 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 68/270 (25%), Positives = 115/270 (42%), Gaps = 16/270 (5%) Query: 44 IVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVG 103 I S + + + G +L P I + + L + E Sbjct: 287 IYSFLWTAIGGAFLTLLIITPFSIKLIQSISIPLKRLSSVARQMTEGKFDCECTGTGVSH 346 Query: 104 SPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE- 162 P + Q+ + ++ ++++ A D LT + +R L + Sbjct: 347 PPEEVTQLIDGFCAMQG-------------KVDRTVQELQKSAVTDQLTGLPNRRYLMKE 393 Query: 163 --ALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L +++ Q ++M++DID+FK IND YGH GD VL ++ Q++V ++AR Sbjct: 394 GTRLVDIAIRAGQPCSLMIMDIDHFKVINDTYGHTVGDIVLQQISKAFQEVVRSSDIIAR 453 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF V P + G +AE++R+ VE + F ++ L T+SIGV Sbjct: 454 YGGEEFVVVAPGSDIDSGRTLAERLRQSVEARIFNNDEQPLTCTISIGVSHYATDIKFGV 513 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 D + ++ AD LY++K GRNR Sbjct: 514 DAYEDMLARADNALYKAKDTGRNRICIAEP 543 >UniRef50_C6DJJ8 Diguanylate cyclase n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DJJ8_PECCP Length = 480 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 156/322 (48%), Gaps = 23/322 (7%) Query: 5 WFSEQFSTGVLIVPCMLTLAI----------PGVLPRFKAEQMMPAIALIVSVIASVVIG 54 WFSE+ S+GV+ V L + + FK + +I+ IAS+ I Sbjct: 164 WFSEELSSGVIFVFLFLKVTRNVKNIFKISTSSIKKTFKKPLFILYPIIIIFCIASLNIT 223 Query: 55 GAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVID--ISVGSPFSIPQMF 112 + LI+ ++ ++ L+ TG + N +I+ ++ + + Sbjct: 224 ---LSVLAILPLIYLSLSHSFNKIILMCTATGIALNYIYINRLINVHDTIEKEYLFELSY 280 Query: 113 SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS--PSLK 170 ++ + + I ++ SF + +K++ L ++ D LT + +R L + + + S + Sbjct: 281 LFQINTSVIIITVLIASFFINKNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSTR 340 Query: 171 QTQH--LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + +++++LDID+FK +ND YGH GD V+ F+ +++ + L+ R GGEEF + Sbjct: 341 DGDNKIMSLLVLDIDHFKKVNDTYGHAVGDNVIREFSTTLKQYTRPQDLLCRWGGEEFLI 400 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + ++ D L +AE+IR +E P + T SIGV + L +DF++ Sbjct: 401 IIQGLSVNDCLDIAERIRSIIEGAPLAISDGHIVRCTTSIGVSFFQ---LERIEDFHEAF 457 Query: 288 VEADTCLYRSKKDGRNRTSTMR 309 EAD LY +K+ GRNR ++++ Sbjct: 458 KEADELLYMAKEQGRNRVNSVQ 479 >UniRef50_C8X5B9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5B9_DESRD Length = 578 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 6/189 (3%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVM 178 + + + + + A D LT +Y+R E L + + Q L ++ Sbjct: 392 ITSIVGSAQDITERKRAEEHLRYLATTDELTGLYNRRHFMEILDTEIERAKRYEQSLALI 451 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 LDID+FK+IND +GH GD L A + + R+GGEEFA+ P + Sbjct: 452 SLDIDHFKTINDTHGHAVGDAALEHLAAQLLACKRQPDSLGRLGGEEFALIAPHTDRAGA 511 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE+IR +E P + +L+ T+S+GV + + D + L+ AD LY +K Sbjct: 512 TELAERIRSELERTPIELESTSLHPTISLGVTALN---IQDNDTIDALLKRADDALYEAK 568 Query: 299 KDGRNRTST 307 + GRNRT T Sbjct: 569 RTGRNRTVT 577 >UniRef50_A0YVG8 GGDEF/response regulator receiver domain protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YVG8_9CYAN Length = 329 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 57/246 (23%), Positives = 106/246 (43%), Gaps = 21/246 (8%) Query: 77 VTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN 136 LT ++ + PF P++ + + + ++ +N Sbjct: 83 PVIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLAR-------VRVHLELKYTKDELN 135 Query: 137 SLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYG 193 +A D LT +++R L E ++ + ++++LDID+FK +ND YG Sbjct: 136 KKSAAFEKQAITDPLTGIFNRRHLMSISEIEYQKAVNYNRLFSIIMLDIDHFKKVNDTYG 195 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL + +Q ++ + + R GGEEFA+ +P + L +AE++R+ + Sbjct: 196 HIVGDQVLKRMTQEVQNLLREGDVCGRFGGEEFAIILPGADLKIALKIAERLRQAIADFY 255 Query: 254 FTWQQK------TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS- 306 + +T+S+GV + D +K+ AD LY++K GRN+ Sbjct: 256 IPIYDSNSSSNLKIKITISLGVTTYH----IDDDKLDKMWRRADDALYQAKAKGRNQVCS 311 Query: 307 TMRYGE 312 GE Sbjct: 312 IYEPGE 317 >UniRef50_B7K273 Response regulator receiver modulated diguanylate cyclase n=6 Tax=Cyanobacteria RepID=B7K273_CYAP8 Length = 308 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 60/263 (22%), Positives = 105/263 (39%), Gaps = 14/263 (5%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + + + + ++ LT ++ V PF Sbjct: 55 LILLDLMMPEINGLEVCKILKSDEATANIPILFLTASNDKEHLIKAFEQGAVDYVTKPFK 114 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 +P++ + + + + + + AD D LT + +R L E + Sbjct: 115 VPELLAR-------VKTHVELKQVQKQLQEACQTMKKLADTDELTGIANRRCLLEFAQRE 167 Query: 168 SLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + ++++D+D+FK+IND YGH GDK + I+ + + R GGE Sbjct: 168 FQRSLRYGTPFCLLMIDVDHFKNINDKYGHPNGDKAIQWVVEIIKLGLREVDFFGRFGGE 227 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EF V +P L +AE+IR+ + QP T +Q T+ LT SIGV + Sbjct: 228 EFIVVLPQTALGGALEVAERIREAIASQPLTLEQDTVTLTASIGVATYTGE----DKTVV 283 Query: 285 KLMVEADTCLYRSKKDGRNRTST 307 ++ AD LY++K GRN+ Sbjct: 284 GMIQRADKSLYQAKAKGRNQVIA 306 >UniRef50_A1U2H0 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A1U2H0_MARAV Length = 630 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 136/337 (40%), Gaps = 34/337 (10%) Query: 2 LADW-FSEQFSTGVLIVPCMLT----LAIPGVLPRFKAEQMMPAIALIVSV--------- 47 L W ++ + G+L + +L L +P +L F M ++++ + Sbjct: 284 LNRWTWAMIMTAGMLALAGLLIPYQWLILPSILVAFVGCSTMLMLSVVRWIKKDPAARYY 343 Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + V G + L + + G + + + ++ F+ Sbjct: 344 TVAWVFMLFGGIVLALSKFTMLPRNLLTENATQVGSALGVILLSIALADRLNREKKKSFA 403 Query: 108 IPQMF-------------SARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQV 154 Q S R+ A+ V + L +Q+ + D LT + Sbjct: 404 AQQKLLREERKARLAQEKSLRIQQEANALLEERVQERTRDLEILNEQLLELSATDPLTGL 463 Query: 155 YSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKI 211 +R + +S + + + L+++++DID+FK ND YGH GD L + A I++ Sbjct: 464 KNRGHFDKKFQSDVVHAYRFEETLSLLIVDIDHFKGFNDTYGHLVGDDCLKMVADCIKQH 523 Query: 212 V-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVG 270 V + L AR GGEEF V +P +AE IR+ ++ F + L+LTVSIGV Sbjct: 524 VTRPQDLAARYGGEEFVVLLPDTPEAGACRVAELIREDIQKMAFRVSDQVLHLTVSIGVC 583 Query: 271 SGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 S S D L AD LYR+K +GRNR Sbjct: 584 SCAPSQ---ADATKALFACADGALYRAKAEGRNRVVA 617 >UniRef50_C0N773 GGDEF domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N773_9GAMM Length = 462 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 14/263 (5%) Query: 53 IGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMF 112 I G + + I + + VT + N+ + +S + ++ Sbjct: 207 INGILDQRYAMSVGIRSDLPLLLSIYNKAIAVTTEETRQQILNNWLSLSFHQNVDLTWLW 266 Query: 113 SARLGIATMAICP----IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS 168 + IA + ++V+ + + K++ + D LT +++R L +A + Sbjct: 267 RMLIVIAVVVALFFYRYLLVNQHNRELQRVNKKLEQLSQRDHLTGIHNRYYLDQAFQQEL 326 Query: 169 LKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 + ++ T+++LDID FK IND+YGH GD V+ A +++ V D+ +VAR GGEE Sbjct: 327 TRYKRYQHGFTIVMLDIDLFKQINDSYGHVVGDDVIKQIAMLLREHVRDQDVVARWGGEE 386 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 F + P + +AE +R+ + PFT + +TVS GV RA +D Sbjct: 387 FLILNPETSLDGARTLAEHLRRLIRRTPFTVD--KIDVTVSFGVTDYRA-----GEDIET 439 Query: 286 LMVEADTCLYRSKKDGRNRTSTM 308 ++ AD+ LY++K+ GR++T Sbjct: 440 MIQRADSALYQAKQSGRDKTVVF 462 >UniRef50_Q310L5 Diguanylate cyclase (GGDEF domain) n=2 Tax=Desulfovibrio RepID=Q310L5_DESDG Length = 525 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGH 194 L +++ L+AD D LTQ+++R L+ + + LT+M+LDIDYFK IND +GH Sbjct: 343 LFREMRLQADHDGLTQLHNRRHFDTRLREELDRHGRYSMPLTLMMLDIDYFKQINDRFGH 402 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD VL A +++ + AR GGEEF +P + ++AE++RK +E + F Sbjct: 403 QAGDAVLRELASVLRETIRTTDYCARYGGEEFVAILPHTDEQQARVLAERLRKNIESRVF 462 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 KT+ TVSIG+ + LT ++L+ EAD LY +K +GRN T Sbjct: 463 RHHGKTIQATVSIGLTGFKPGALTPR---DELVREADAALYLAKANGRNVVCTF 513 >UniRef50_C3JIZ7 Diguanylate cyclase n=2 Tax=Rhodococcus erythropolis RepID=C3JIZ7_RHOER Length = 471 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 150/321 (46%), Gaps = 20/321 (6%) Query: 5 WFSEQFSTGVLIVPCMLTLAI-------PGVLPRFKAEQMMPAIALIVSVIASVVIGGAG 57 WFS +F + IVP +LT P + ++P L V +I VIGGAG Sbjct: 158 WFSSEFVNYMTIVPLVLTFPSLRRVDREPKAVATLLRRSVVPTALLAVCIILEWVIGGAG 217 Query: 58 SLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG 117 ++AF +PAL+ A+ VT +LT V+ A +VL A+ + +S S P S ++G Sbjct: 218 AIAFAMPALVTAALLTNVFVTSVLTAVSTAWTLVLTADGHLGLS--SEGVSPVSASVQIG 275 Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA------LKSPSLKQ 171 ++ +A+ PI V+ + ++ + D LT R P Sbjct: 276 LSLLAVAPIAVACVILERRRALEALTQAVTHDDLTGALRRDEFLRRGGSVTGATDPRRHS 335 Query: 172 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + ++V+++D+D+FK +NDN GH GD L FA +++ + DK L AR+GGEEF V + Sbjct: 336 GRPVSVLMMDLDHFKMVNDNLGHRAGDTALVSFADQVRRHLDDKHLFARLGGEEFVVLMA 395 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 V+ AE IR+ TVSIGV D +L+ AD Sbjct: 396 GVDLEGATETAEMIRRAQAENSSAVLGD-FGPTVSIGVAC----SPHGDADLTQLVDCAD 450 Query: 292 TCLYRSKKDGRNRTSTMRYGE 312 LYR+KK RNRT + G Sbjct: 451 EALYRAKKLDRNRTVALTVGS 471 >UniRef50_B1WQB8 Putative diguanylate cyclase n=2 Tax=Cyanothece RepID=B1WQB8_CYAA5 Length = 493 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 16/258 (6%) Query: 58 SLAFPLPALIWCAVRYTPQVTCLLTF-VTGAVEIVLVANSVIDISVGSPFSIPQMFSARL 116 +A+PL L A R T + L VT E+ +A S+ + I ++ AR Sbjct: 241 IIAYPLEQLTHIAQRVTQESNFQLKAPVTTQDEVGKLATSMNQLIQWIDEHITELKEARQ 300 Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-- 174 + V + +K++ + D LTQ+++R E L + + Sbjct: 301 TLEKR------VEQRTIELQQALKKLKALVNLDGLTQIFNRRYFDEVLYREWQRGRREKS 354 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPS 232 ++++L D+DYFK N+ YGH GD L A+ I++ V LVAR GGEEF + +P+ Sbjct: 355 VISLILCDVDYFKIYNETYGHLGGDSCLQEVAQGIRRQVKRPSDLVARYGGEEFVILLPN 414 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTL--YLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 + L +AE IR +E + + ++T+S+GV S TD++ L+ EA Sbjct: 415 TDLNGALALAEMIRNAIEAMNIPHENSLVSDHVTISMGVTS---KIPQETDEYEHLIEEA 471 Query: 291 DTCLYRSKKDGRNRTSTM 308 D LY++K++GRN Sbjct: 472 DDALYQAKENGRNCVCYF 489 >UniRef50_A4BG19 GGDEF domain protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BG19_9GAMM Length = 377 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 82/305 (26%), Positives = 130/305 (42%), Gaps = 13/305 (4%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAG----SLAFPLPA 65 F+ L + + L I F + + L V + V GGA + LP Sbjct: 66 FTAFALFLFAHIQLRIKRNQSAFLFAARLVQLVLFVLCLYLVYAGGANQTGPLWVYLLPP 125 Query: 66 LIWCAVRYTPQVTCLLTFVTGAVEIVLV-ANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 ++ + FV G + IV N++ + F ++S A+ Sbjct: 126 VVMFLSGLKRGMMITALFVLGYLIIVFFPGNALGAVDYSYEFKTRLLYSFLTLTFLAAVY 185 Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLD 181 S +N L + +A D LT + +R G+ E ++ S + Q +T +L D Sbjct: 186 EQSRQSSYQKLNELKQDFERQASQDTLTHLLNRRGMRERIRYEVRRSQRNNQPITFILAD 245 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK IND+YGH+ GD VL ++ +Q V + +AR GGEEF +P N + + Sbjct: 246 LDHFKEINDHYGHDTGDTVLIQVSQLLQDSVRQQDSIARWGGEEFLFLLPETNARQAMQL 305 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AEKIR +E P Q L T+S G+ ++ + EAD LY++K G Sbjct: 306 AEKIRSIIESHPLNSDQPPLTTTMSFGIAEM-----LDLENHQSTIAEADNRLYQAKSQG 360 Query: 302 RNRTS 306 RN Sbjct: 361 RNCVV 365 >UniRef50_C6BVV0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BVV0_DESAD Length = 838 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 8/194 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLL 180 I V++ V Q+ A D +T++ +R E +KS + ++ L++++ Sbjct: 649 LLIGVNWDVTESREKENQLRRMATTDDMTKLNNRRYFIELVKSEIERSIRYSRPLSLVMF 708 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D FK++ND YGH+ GD VL A + ++ D ++ R+GGEEFAV +P + +L Sbjct: 709 DVDKFKAVNDTYGHDVGDMVLKAIAATAKGVLRDVDIIGRLGGEEFAVGLPETDLKGAML 768 Query: 241 MAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE++R +E + TVS+GV S D + L+ AD LY +K+ Sbjct: 769 LAERLRVVLEEASVELPDGGIVDFTVSLGVAVLDRSI----TDVDVLLKHADLALYAAKE 824 Query: 300 DGRNRTSTMRYGEE 313 +GRNR + Sbjct: 825 NGRNRVEAYTQMMD 838 >UniRef50_A1TWP6 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A1TWP6_MARAV Length = 565 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 122/304 (40%), Gaps = 14/304 (4%) Query: 15 LIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYT 74 +I L V L + + G L + L W Sbjct: 260 IIWISSLAAFATPVAWLIGINVWRRGQILGGFYVLAWTPLLLGHLVLAVSKLGWIP---R 316 Query: 75 PQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPI--MVSFSV 132 T L AVE++L++ ++ Q L I A + V Sbjct: 317 SPFTELAPQAGVAVEVILLSFALAYRINMERRRRQQAQEHALDIQRQANLTLESRVRERT 376 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSIN 189 + +Q+ + D LT V +R E L++ +L+ L+++LLDID+FK +N Sbjct: 377 EELEQANEQLRAISLTDGLTHVANRRRFDEKLETEWNRALRHEHELSLILLDIDHFKQVN 436 Query: 190 DNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 D +GH GD L A + V LVAR GGEEFA+ +P+ + +AE++R Sbjct: 437 DRFGHLVGDDCLVALASILSDEVQRSGDLVARYGGEEFAILLPTTDVAGAQQVAERMRLS 496 Query: 249 VELQPFTWQQK--TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 V P + + LT+S+GV + + + D +L+ AD LY +K DGRNR Sbjct: 497 VARTPVNSGEHMSPVSLTISLGVATLTPNRQS---DCQELIRRADEALYAAKSDGRNRVV 553 Query: 307 TMRY 310 Sbjct: 554 VWHP 557 >UniRef50_C0QT79 Signal transduction response regulator n=1 Tax=Persephonella marina EX-H1 RepID=C0QT79_PERMH Length = 509 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 14/202 (6%) Query: 109 PQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK--- 165 + +GI + + +SF + I ++ A+ D LT +Y++ L+ Sbjct: 308 NTFIISYVGINLLVGLLLTMSFILGVIK---ERFKAMAEIDTLTGIYNKGKFNHLLQVEL 364 Query: 166 SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 S + + L++++ DID+FK IND +GH+ GD VL A+ + + AR GGEE Sbjct: 365 DRSKRYGRPLSLIIFDIDHFKKINDAFGHQAGDYVLKTLAKIVSSNIRSTDFFARWGGEE 424 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 F + P + ++AEKIRK +E PF K +T S GV D + Sbjct: 425 FVILAPETDLEGAQILAEKIRKAIEEYPFETVGK---VTSSFGVTE-----AFENDTVDS 476 Query: 286 LMVEADTCLYRSKKDGRNRTST 307 + AD LY++K GRNR Sbjct: 477 FVKRADVALYKAKDKGRNRVEI 498 >UniRef50_Q1N175 Diguanylate cyclase (GGDEF domain) n=1 Tax=Bermanella marisrubri RepID=Q1N175_9GAMM Length = 294 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 106/235 (45%), Gaps = 22/235 (9%) Query: 77 VTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN 136 L+T +V + V P+S+ + + S Sbjct: 78 PVILVTANGDDQNVVDGLDLGAVDYVIKPYSLSVLLARV--------------RSALREK 123 Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYG 193 + + A D LT +Y+R +E + + ++ + ++LDID+FK +ND YG Sbjct: 124 ERLDLMEKWATTDPLTGLYNRRFFFEQAQRELERVQRNETDASFIILDIDHFKKVNDEYG 183 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD VL A+ ++ L R GGEEF + +P + LL+AE+ RK VE Sbjct: 184 HLVGDDVLEGLAKLFKETFRKVDLCCRFGGEEFVICLPDTDTEGALLVAERTRKKVEELS 243 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 F ++ L++T+S+GV S ++ AD LY++K++GRNRT ++ Sbjct: 244 FNTEKGPLHVTISLGVSSAN-----ENTTLEDMLKRADDALYQAKQNGRNRTESL 293 >UniRef50_C5SA57 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SA57_CHRVI Length = 434 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 6/199 (3%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHL 175 A + + + + L + + D LTQ+++R + + + + Sbjct: 234 AGQVVGAMEIIRDITDSKRLEEDLRQLTRLDPLTQLFNRRYFFTLAEQEYQRFLRYHHPM 293 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 + ++DID+FKS+ND YGH GD VL + A+ + + ++AR GGEEF + +P + Sbjct: 294 ALCMIDIDHFKSVNDRYGHLVGDTVLCIVAQTLHDNLRQVDILARYGGEEFVILLPETDL 353 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 E++R V + + +T+S+GV + +L+ AD LY Sbjct: 354 QTACASTERLRVAVAERRIETPSGPVSVTLSLGVVAIADG---PAMTLERLLDAADQMLY 410 Query: 296 RSKKDGRNRTSTMRYGEEV 314 R+K+ GRNR G + Sbjct: 411 RAKQAGRNRVEIWDLGRSM 429 >UniRef50_D2L2K3 Diguanylate cyclase with GAF sensor n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L2K3_9DELT Length = 499 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 93/183 (50%), Gaps = 11/183 (6%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECG 197 QV +RAD D LT++++R E L + + +++++LDID+FK IND YGH G Sbjct: 314 QVKVRADHDGLTRIHNRRAFDERLVEELRRHQRYHHPMSLLMLDIDHFKGINDTYGHLVG 373 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL R + + + AR GGEEF + +P ++AE++R + F Sbjct: 374 DHVLREVGRLMTETLRSTDFTARYGGEEFVIILPQTAEEQSRVLAERLRGLIADARFVHD 433 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM-----RYGE 312 +TVSIG + L+ D L+ +AD LY++K GRN+ T R GE Sbjct: 434 GHPFSITVSIGAATLLPGALSKRKD---LLDKADKALYQAKTLGRNQVCTALGPVSRTGE 490 Query: 313 EVV 315 E V Sbjct: 491 EAV 493 >UniRef50_A3Y6S3 PAS:GGDEF protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y6S3_9GAMM Length = 299 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 7/183 (3%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 + + V ++ + D LT + +R E + + H +++ LDI Sbjct: 117 VSIQRDVTEYIYTQNKLEELSRTDPLTGLINRRVFDEMAEKEFYRYQNQNIHYSLLALDI 176 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 DYFK IND YGH GD VL+ F+ +K + + +AR+GGEEF + +P+ + V + +A Sbjct: 177 DYFKRINDKYGHLTGDYVLASFSTLCEKNIRSQDKIARIGGEEFCIILPATDKVGAIEVA 236 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 EK+R+ + F + + +TVSIGV + S D+ ++ AD LYR+K GR Sbjct: 237 EKLRRAISNARFKQDEHEIAVTVSIGVSQVKMS----DYDYVAMLKRADENLYRAKHQGR 292 Query: 303 NRT 305 N+ Sbjct: 293 NQV 295 >UniRef50_D1U9C4 Diguanylate cyclase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9C4_9DELT Length = 498 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 63/175 (36%), Positives = 97/175 (55%), Gaps = 6/175 (3%) Query: 140 KQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHEC 196 K+V LRAD D LT++Y+R E L ++ ++ L+++++D+D+FK +ND YGH+ Sbjct: 319 KEVKLRADRDGLTRIYNRHSFDERLIYEIKRRRRYNHDLSLLMVDLDHFKQVNDTYGHKA 378 Query: 197 GDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 GD VL + + L AR GGEEF V +P + +AE+IR+ ++ F + Sbjct: 379 GDMVLRKVGEILTETFRTTDLAARYGGEEFVVLLPHTSEEAAWKLAERIRESIQGCVFRF 438 Query: 257 QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 +T SIGV S A LT DD L+++AD LY++K +GRN R Sbjct: 439 DGHEFSVTASIGVASVEAGALTRDDD---LLIKADKALYKAKNNGRNMVVISRPE 490 >UniRef50_Q2VYV6 FOG: GGDEF domain n=2 Tax=Magnetospirillum RepID=Q2VYV6_MAGSA Length = 578 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 7/187 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLL 180 I V + + ++ A D LT +++R E + + + + L ++L Sbjct: 395 GVIGVMLDITERKRMEAELRRLATTDVLTGIFNRRHFMEMARIEVDRARRHGRPLVALML 454 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND +GH GD + A +I+ + ++ RMGGEEFA+ + + LL Sbjct: 455 DIDHFKRINDTHGHPVGDVAIKALADVCTQIIRHEDVLGRMGGEEFAIVLTETDLDGALL 514 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE++R+ V + T+ T SIGV L + ++ AD LY +K+ Sbjct: 515 VAERLRQAVAAIRIPAELGTVAFTTSIGVAER----LEGDATIDTILSRADMALYSAKRS 570 Query: 301 GRNRTST 307 GRN+ + Sbjct: 571 GRNKVAV 577 >UniRef50_A1AK55 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=Desulfuromonadales RepID=A1AK55_PELPD Length = 301 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 8/186 (4%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVM 178 ++ V + + +++ D LT VY+R L LK + + ++M Sbjct: 117 ITSLFLIVQDVTELATYEQKLIEMNTVDALTGVYNRRFLESRLKEECDRYGRYSRPFSLM 176 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 ++DID+FK +ND +GH+ GD VL A ++ +AR GGEEF +P + Sbjct: 177 MIDIDFFKKVNDTHGHQGGDLVLKNVAAGAAAMIRKSDFLARYGGEEFCCLLPETDCDAA 236 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE +R +E +Q+K + +T+S+G+ D L+ AD LY++K Sbjct: 237 ETVAEHLRAHIENMEHLFQKKVIRVTISLGIACFAP-----DDSPETLVKRADEALYQAK 291 Query: 299 KDGRNR 304 + GRNR Sbjct: 292 RSGRNR 297 >UniRef50_A5GCU4 Diguanylate cyclase n=2 Tax=Geobacter RepID=A5GCU4_GEOUR Length = 422 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 59/244 (24%), Positives = 114/244 (46%), Gaps = 12/244 (4%) Query: 67 IWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPI 126 + C ++ ++ ++ + +V + + + LGI + Sbjct: 187 LECHRSQGYKIGSVMGALSVTIPVVTLIRETDTDKLMIVAATIGTIGLLLGITYFLTWRL 246 Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDID 183 +++ + K + A D LT + +R + + L + + L +++LD+D Sbjct: 247 VLNLDM-----AQKHLKRLASTDELTGLKNRRQIMKRLDEEYQRAIRLGEPLCLIMLDLD 301 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK IND YGH GD VL A H++K + ++ R+GGEEF + P + +++A+ Sbjct: 302 HFKKINDTYGHPFGDLVLKCVAGHMKKALRRYDVLGRIGGEEFLIVSPGTTREEAVVLAQ 361 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 ++R VE++ ++ K + +TVS GV D+ L+ AD+ LY +K++GRN Sbjct: 362 RLRSTVEMEKIAYEDKKVTITVSCGVAFLYKG----DDNVEILLKRADSALYIAKQEGRN 417 Query: 304 RTST 307 R Sbjct: 418 RVVA 421 >UniRef50_Q47Y21 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Y21_COLP3 Length = 722 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 16/283 (5%) Query: 32 FKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIV 91 K E + +A+++ ++ ++ A L + + + + ++T L ++ + Sbjct: 452 LKKEGYLIILAMLIFLLVAIFF--ALVLNYSIISPV-------RKLTYALNDMSEGQNNI 502 Query: 92 LVANSVIDISVGS-PFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDF 150 + +GS + ++ L + S A D Sbjct: 503 HFNHIDSKDEIGSMQLAFEKLRRKLLQGDVYKATVSQQQKEIKYRKSQQDHFQQLALTDA 562 Query: 151 LTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARH 207 LT +R E L L++MLLDID+FKS+ND YGH GD+VL +F + Sbjct: 563 LTGAVNRHHFNEVLDQEIANVNNHGSPLSIMLLDIDHFKSVNDRYGHGVGDEVLVMFYQT 622 Query: 208 IQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSI 267 + V +VAR+GGEEF + +P+ V+ AE++R+ + + +TVSI Sbjct: 623 CVEAVRSSDVVARIGGEEFVIIMPNTQLVNAQKFAERLRQKIAKLELNIANNQISVTVSI 682 Query: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 GV ++ Y T + F + AD LY++K GRN+ + Sbjct: 683 GVSQWQSEYFTNAETF---VAHADKSLYQAKNSGRNKVVVAQQ 722 >UniRef50_Q15V65 Diguanylate cyclase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V65_PSEA6 Length = 370 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 136/313 (43%), Gaps = 20/313 (6%) Query: 7 SEQFSTGV-LIVPCMLTLAIPGVLPRFK------AEQMMPAIALIVSVIASVVIGGAG-- 57 ++ F GV L+V L +L F+ + AL++ ++ +V GG Sbjct: 58 NDDFYLGVTLLVASALFFTSRLILKFFQSKNGYKVSANLVTGALMLLMLYLIVTGGVKNT 117 Query: 58 --SLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLV-ANSVIDISVGSPFSIPQMFSA 114 + +P ++ + L F A+ I+ N + FS ++S Sbjct: 118 GPLWIYIVPPVVLFFGGLKRGLIQLGCFAFVAIVILEYPGNLFLMAQYSDEFSSRLIYSF 177 Query: 115 RLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQ 171 S + L ++ +A D L+ + +R G+ E L+ +L+ Sbjct: 178 ITVSLLFVFYEYSRQRSFKTLQELSREFEKQARLDPLSGLQNRRGMLEKLEYEHQRTLRH 237 Query: 172 TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 ++LT+M+ DID+FK +ND +GH+ GD V++ + K + + VAR GGEEF +P Sbjct: 238 HKNLTLMMCDIDHFKRVNDKFGHDVGDGVITQVGQLFDKALRKQDTVARWGGEEFLFLLP 297 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 +AEK+R V Q + + +TVS+G+ D+ + + AD Sbjct: 298 ETTQEQAFTLAEKLRAQVSKQQYQAGSDSFTVTVSLGIYQMHPQ-----DNLDHAISRAD 352 Query: 292 TCLYRSKKDGRNR 304 T LYR+K +GRN Sbjct: 353 TNLYRAKSNGRNC 365 >UniRef50_Q47W79 GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47W79_COLP3 Length = 334 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 137/312 (43%), Gaps = 19/312 (6%) Query: 7 SEQFSTGVLIV---PCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASV--VIGGAGSLAF 61 + Q +TGVL++ ++ + K + ++ + + S Sbjct: 31 ANQLNTGVLVIDADFNIVIWNRFLQVHTDKVPGSIIGQSIFSAFPELPQRWLSRKLSSVL 90 Query: 62 PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM 121 L +C+ + + L + +A + + + + + I + Sbjct: 91 QLNTPSFCSWQQRHHLFELPHTRPITTDSEFMAQNCTFLPIETDVNGK-------HICIL 143 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVM 178 + + ++A + D LTQVY+R ++L+ + + + L+++ Sbjct: 144 IEDVTDACHYQMQLQKTLAEIAQISRIDGLTQVYNRRHWQDSLEQEYAKARRHDKKLSLI 203 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +LD+D+FK +NDNYGH+ GD VL + I ++ + R GGEEFA+ +P + Sbjct: 204 MLDLDHFKLLNDNYGHQGGDMVLIEVSALISTLLRVEDTFGRYGGEEFAIILPETDSAGA 263 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 + +A++I + + PFT+ + + +TVS+GV + ++ +L+ +AD+ LY++K Sbjct: 264 IELAQRICRIIATTPFTYNDQVIKVTVSLGVAQLSSKES----NYEELITQADSALYQAK 319 Query: 299 KDGRNRTSTMRY 310 GRN+ Sbjct: 320 SQGRNQVCNAAE 331 >UniRef50_Q1JXK3 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXK3_DESAC Length = 475 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 11/221 (4%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGI---ATMAICPIMVSFSVAAINSLMKQVALRAD 147 ++ A S+ + + + + + G+ A + I+ S + +Q+ +A Sbjct: 254 MIAAVSINEDNFFADWRRHSLLMGGFGLVVGAILFTLSILTVRSQQEQFRIQQQLQQQAT 313 Query: 148 FDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT + +R E + + L+V+++DID+FK +ND YGH GD+VL Sbjct: 314 TDPLTGIANRRYALEQAALEIKRNQRTGTPLSVVMMDIDHFKKVNDTYGHHVGDQVLMEV 373 Query: 205 ARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 A+ + + LV+R GGEEF + +PS N AEKIR+ +E F + + +T Sbjct: 374 AQTCRSHCRESDLVSRFGGEEFLILLPSTNLNGAQTHAEKIRQAIEDLSFPTAEGNVSVT 433 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 S GV + ++++ AD LY++K DGRN Sbjct: 434 ASFGVSQWQGETK-----IDRVVSRADAALYQAKHDGRNCV 469 >UniRef50_Q0EXC8 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EXC8_9PROT Length = 615 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 9/184 (4%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDY 184 + + L +++ +A D LT + +R +E + + +H ++++LD+D+ Sbjct: 431 IDRDITDRKELERELESQARTDVLTGLNNRRYFFELAELELARAKRHGNQFSLLMLDVDH 490 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK ND+YGH GD+VL + + + L R+GGEEFA+ +P + +AE+ Sbjct: 491 FKLFNDSYGHHIGDRVLQKLSEVCMHTLREIDLSGRIGGEEFAIMLPETRGDRAMEVAER 550 Query: 245 IRKGVELQPFTWQQKT--LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 +R + P +Q++ ++ TVSIGV S A+ + L+ AD LY +K GR Sbjct: 551 LRLAIAGAPVLLEQQSTFVHFTVSIGVTSLVAA----GRQVDDLLKRADDALYAAKNAGR 606 Query: 303 NRTS 306 N+ Sbjct: 607 NQVC 610 >UniRef50_A1U7E6 Diguanylate cyclase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U7E6_MARAV Length = 405 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 78/317 (24%), Positives = 126/317 (39%), Gaps = 25/317 (7%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLP 64 W S + + + T IP V R +A ++ A A+ +IG G Sbjct: 98 WLSTTLVLVLAALMYVYTFHIPDVNLRIQAFSIVFA--------AACLIGATG------- 142 Query: 65 ALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 L L+ + V + + + L I Sbjct: 143 FLRHRESHNRMAGKMLIAMFLLVSAFFIFRFFRSFYEVPPEDFMNAGWLSALAIVAGEFL 202 Query: 125 PIMVSFSV--AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVML 179 I+ SF A + L +++ A D LT +Y+R E + + +++ Sbjct: 203 VILSSFCTIWMASDELQDELSEIARIDPLTGLYNRRAFDECCDIEFSRAQRSGAPFAIIM 262 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 D+D+FK +ND YGH GD+VL FA +++ + +VAR GGEEF + +P + GL Sbjct: 263 CDLDHFKRVNDRYGHHVGDEVLRRFANTLKEHIRKHDVVARFGGEEFVLLLPGKDTEQGL 322 Query: 240 LMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AEK+R T L L+ S GV +S ++ ++ AD LY +K Sbjct: 323 EVAEKLRAKTADTQITIGDDVCLTLSASFGVAHYDSSDRE----WSAVLHRADNALYAAK 378 Query: 299 KDGRNRTSTMRYGEEVV 315 K GRNR + + V Sbjct: 379 KQGRNRVVDLGTENQSV 395 >UniRef50_D0SXM5 Predicted protein n=2 Tax=Acinetobacter lwoffii SH145 RepID=D0SXM5_ACILW Length = 440 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 132/294 (44%), Gaps = 15/294 (5%) Query: 25 IPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFV 84 I + A + +AL +S + I S F L A + T + + Sbjct: 129 ILPIGTTVAAAAWIGLLALSISPHVATYI--YASAIFILIANL---CVQTQFKVAVYCSI 183 Query: 85 TGAVEIVLVANSVIDISVGSPFS--IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQ- 141 A+ I+L + + S FS ++ + I I + SF + ++ Q Sbjct: 184 LIALFIMLGVSQFMSASQAFIFSVVFSPLWFFSIYINWNNILNVRRSFLRSLLDEWNYQT 243 Query: 142 VALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLT--VMLLDIDYFKSINDNYGHECGDK 199 + A D LTQ+Y+R + + + +H + +++ D+D+FK+IND+YGH+ GD+ Sbjct: 244 LKNLAHTDDLTQLYNRRHFVDMAERSIHQWPKHASSCLLMFDVDHFKNINDSYGHDVGDR 303 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-Q 258 VL + A +K + ++AR GGEEF + D L++AE+IR ++ Q + Sbjct: 304 VLQLIAEVTRKEMRHSDVLARFGGEEFIALLEDTQLQDSLVIAERIRCAIQKQYIYVEPN 363 Query: 259 KTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 T+ T+SIGV + L+ +AD LY++KK GRNR Sbjct: 364 HTIRFTISIGVAELESHTQP----LEDLIKQADIALYQAKKSGRNRIEVYHPDM 413 >UniRef50_B8DIJ3 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DIJ3_DESVM Length = 1000 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 7/190 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLL 180 + ++ + L + + A D LT + +R + E +++ + L V++L Sbjct: 793 VVLSIARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLML 852 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D FK +ND +GH GD VL + Q+ + + ++ R+GGEEFA + + D L Sbjct: 853 DLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALA 912 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 AE++R+ VE + + L TVSIG+ + ++ AD+ LY +K+ Sbjct: 913 AAERLRRAVEEMDVPFSGQRLRCTVSIGLALRGPG----DGALDDILRRADSALYAAKEA 968 Query: 301 GRNRTSTMRY 310 GRNR R Sbjct: 969 GRNRVMLARA 978 >UniRef50_B8FMG8 Diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FMG8_DESAA Length = 417 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 5/208 (2%) Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 I +A + ++ +++ I+VS + + + + + D LT++++R L Sbjct: 209 IASGLTAAISLSLLSMIWILVSRLARRLTKAYETIEVMSITDELTRLHNRRHFETRLAEE 268 Query: 168 S---LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 L+ +++M+LDID+FK +NDNYGH+ GD VL+ FA ++ V + AR GGE Sbjct: 269 ISRSLRYGSPMSLMILDIDHFKRVNDNYGHQAGDWVLTQFATLLKDNVRKADVPARWGGE 328 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRA-SYLTLTDD 282 EF V + + AEK+R+ VE F +++ +TVS+GV S S + + Sbjct: 329 EFVVILTESTISQARMAAEKVRRNVESAEFNIPDGRSIPVTVSVGVASLDMISGDEMGSE 388 Query: 283 FNKLMVEADTCLYRSKKDGRNRTSTMRY 310 + L+ AD LYR+K++GRNRT + Sbjct: 389 ADVLVKTADDALYRAKQEGRNRTVAVSS 416 >UniRef50_B7R5U6 PAS fold family protein n=13 Tax=Thermoanaerobacterales RepID=B7R5U6_9THEO Length = 692 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 11/187 (5%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLD 181 I + ++ + + ++ D LT +Y+R + L+ + ++ ++++ D Sbjct: 514 AIGIIRDISERKRFEELLYRQSITDPLTNIYNRRFFMQMLEQEIERVKRNKKLFSLIMFD 573 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK++ND +GH GD VL A ++ + AR GGEEF + +P + + + Sbjct: 574 LDHFKNVNDRFGHAAGDMVLKSVADTVKGRIRKTDYFARWGGEEFIILLPETSLNNAAEL 633 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++RK + K +T S GV R TD + +++ D LY +K G Sbjct: 634 AEELRKKISETELDGIGK---VTASFGVTEYR-----NTDTVDTVLLRVDGALYEAKGSG 685 Query: 302 RNRTSTM 308 RN Sbjct: 686 RNCVKIA 692 >UniRef50_A3WKT4 GGDEF domain protein n=2 Tax=Alteromonadales RepID=A3WKT4_9GAMM Length = 364 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 86/326 (26%), Positives = 140/326 (42%), Gaps = 33/326 (10%) Query: 14 VLIVPCMLTLAIP--------------GVLPRFKAEQMMPAIALIV------SVIASVVI 53 V L L P F + M AI+LI S + +++I Sbjct: 32 VAFFFIFLILNSPILAWVNLLSIAMYLTAYWAFGQRKNMLAISLIWLEVLYHSALGTLMI 91 Query: 54 GGAGSLAFPLPAL---IWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQ 110 G + L I+ ++ P V LL + + L + + + ++ Sbjct: 92 GWDSGFHYFLLMFVPAIFVSMSLKPAVLTLLGLWVYYLSLDLFSWYYPAMQPINATAVVG 151 Query: 111 MFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK 170 + L + + + + + + +N Q+ A D LT++ +R + E LK Sbjct: 152 VHIFNLTVVFIMFGYLAL-YYLNKVNLTHDQLRFYATTDPLTKLRNRRHMSELLKRALQN 210 Query: 171 ---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 + ++++V+LLD+D+FKS+ND +GHE GDKVL + A ++ V D V+R GGEEF Sbjct: 211 KHAEQRNVSVLLLDLDHFKSVNDTHGHEVGDKVLRITADILRDTVRDHDKVSRWGGEEFL 270 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKL 286 V +P N +AE+IRK + P+ + + LT SIGV + D N L Sbjct: 271 VFLPRTNLNHAAQVAERIRKAIAKYPWHTVINENIQLTTSIGVSELKP-----DDSVNTL 325 Query: 287 MVEADTCLYRSKKDGRNRTSTMRYGE 312 + AD LYR K+ GRN Sbjct: 326 VKRADDALYRGKEAGRNWVELESEAS 351 >UniRef50_D0KF92 Diguanylate cyclase n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KF92_PECWW Length = 489 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 17/315 (5%) Query: 5 WFSEQFSTGVLIVPCMLTLA--IPGVLPRFKAEQMM----PAIALIVSVIASVVIGGAGS 58 WFSE+ S+GV+ V L + I VL + M P L +I + + Sbjct: 164 WFSEELSSGVIFVFLFLNITKKIKNVLKISQISIKMTIKKPFFILYPLIIIFCIASSNIT 223 Query: 59 L-AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS--VGSPFSIPQMFSAR 115 L + LI+ ++ + ++ TG + N +I + + + + + Sbjct: 224 LSVLAILPLIYLSLSLSFNKIVVMCSATGIALNYIYINRLIGVHNKIEKEYLFELSYLFQ 283 Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS--PSLKQTQ 173 + + + I + SF + +K++ L ++ D LT + +R L + + + S++ + Sbjct: 284 INTSVIIITALTASFFINGNRKNIKRIELISNHDALTGMLNRRSLNQHMMNIINSIRDGE 343 Query: 174 H--LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + +++++LDID+FK IND YGH GD V+ F+ I++ + L+ R GGEEF + + Sbjct: 344 NKMMSLLVLDIDHFKKINDTYGHAVGDNVIRGFSTAIKQHTRPQDLLCRWGGEEFLIIIQ 403 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 ++ + L +AE+IR +E + T SIGV L +DF+ EA Sbjct: 404 GLSKNECLEIAERIRTIIEGSSLAISNGHAVRCTTSIGVSFFH---LERIEDFHDAFKEA 460 Query: 291 DTCLYRSKKDGRNRT 305 D LY +K+ GRNR Sbjct: 461 DKLLYIAKEQGRNRV 475 >UniRef50_Q085X7 Diguanylate cyclase n=2 Tax=Alteromonadales RepID=Q085X7_SHEFN Length = 357 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 72/305 (23%), Positives = 127/305 (41%), Gaps = 18/305 (5%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 F + ++ L + + + +L + + V GG PL I Sbjct: 52 FVSSIIYC---LAYIVLKKYNKLNLSSFIIIYSLYILMFYLVFTGGVEQ-TGPLWIFIVA 107 Query: 70 AVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVS 129 V ++ I + + F RL ++ + + Sbjct: 108 PVSVYVLGLSYGLVNLLFFLSIIAIIMFSPIEMPQYATYSTEFKVRLILSFLTTTFLSAL 167 Query: 130 FSVAAINSLM------KQVALRADFDFLTQVYSRS---GLYEALKSPSLKQTQHLTVMLL 180 + + + S K+ A D LT + +R + + KS + + L+V+L Sbjct: 168 YEYSRMLSYNSALKLGKKYQQLALSDPLTTLANRRNALTILQQEKSRISRNNEPLSVLLC 227 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D+FK +ND YGH CGD VL+ ++ ++ V + VAR GGEEF +P + + Sbjct: 228 DLDHFKMVNDKYGHNCGDMVLTELSQVFKQSVRQQDCVARWGGEEFLFILPQTSAEQASV 287 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AEKIR V + + + LT+SIG+ T + ++L+ AD LY++KK+ Sbjct: 288 IAEKIRTNVHHHKVHFLKHEISLTISIGISQL-----TDDQNIDELINNADRNLYQAKKN 342 Query: 301 GRNRT 305 GRN+ Sbjct: 343 GRNQV 347 >UniRef50_A6DDS7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DDS7_9PROT Length = 750 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 62/182 (34%), Positives = 95/182 (52%), Gaps = 12/182 (6%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFK 186 + ++ I L KQ+ A +D LT +Y+R+ LK S + L+++ LDIDYFK Sbjct: 578 YQLSKIKKLSKQLETMAFYDKLTNIYNRAKFKNILKEFIEYSKRYKTPLSLIFLDIDYFK 637 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 INDN+GHE GD VL + + + + + R GGEEF + +P+ + ++AEKIR Sbjct: 638 KINDNFGHEKGDLVLKEMVKVAKLSLRESDVFGRWGGEEFLILLPNTDINGAKIVAEKIR 697 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 +E F + +TVS+GV + D + AD LY++KK+GRNR Sbjct: 698 DAIESHDF----DGIKVTVSLGVTQLK-----EDDTIESFVNRADIALYQAKKEGRNRVV 748 Query: 307 TM 308 Sbjct: 749 VF 750 >UniRef50_C0QM24 Putative uncharacterized protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM24_DESAH Length = 488 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 8/193 (4%) Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQH 174 + + I +++ + I S K++ A D LT VY+R + ++ Sbjct: 291 VFSFGIIGLILIVTNLTIASFQKRLTKMASTDKLTGVYNRRAFDIIIDQTLKEIQRKQTP 350 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L+++L D+D+FK +ND YGH GD ++ + + + ++ R GGEEF + + + Sbjct: 351 LSIILFDLDHFKRVNDTYGHLAGDYIIQTTVGTAARTIRNSDILCRWGGEEFLILLKGCD 410 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 D + AEKIR V QP + + +T+S+GV D L+ AD L Sbjct: 411 LGDAMKTAEKIRTAVASQPARYGDDQICVTISVGVTEHTGQ-----DTKETLLKRADKAL 465 Query: 295 YRSKKDGRNRTST 307 Y +K G+NR T Sbjct: 466 YLAKASGKNRCET 478 >UniRef50_C4XS30 GGDEF domain protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XS30_DESMR Length = 498 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 6/170 (3%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECG 197 QV +RAD D LT++++R E L + ++ ++++++DID+FK IND YGH G Sbjct: 314 QVKIRADHDGLTRIHNRRAFDERLIDELRRHQRYRHAMSLLMVDIDHFKGINDRYGHLVG 373 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL + + + AR GGEEF V +P ++AE++R + F Sbjct: 374 DHVLREVGSILSETLRSTDFTARYGGEEFVVILPQTAEEQARILAERLRGAIAEARFVHD 433 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + +TVSIGV + + LT D L+ +AD LY++K GRN+ T Sbjct: 434 GEDFSITVSIGVSALQPGALTRRKD---LLEKADKALYQAKHLGRNQVCT 480 >UniRef50_A8TM57 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM57_9PROT Length = 461 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 7/191 (3%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVM 178 I V V + L +++ A D LT + +R + +++ + ++V+ Sbjct: 273 LIGVTGVMVDVTESHRLRQELERLATTDPLTGLSNRRAFLMRAREEVERAVRHDRPMSVV 332 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVD 237 ++D+D+FKS+ND YGH+ GD VL A +Q + + + AR GGEEF + +P Sbjct: 333 MIDVDHFKSVNDRYGHDIGDLVLQDVAATVQGALRNSGDVAARFGGEEFVLLLPETTVSG 392 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 +AE+IR E +Q + T S GV R+ + ++ AD LYR+ Sbjct: 393 AQQLAERIRVAFERTAVETEQGAVRFTASFGVDVFRSDM---DTGIDTVLKRADDALYRA 449 Query: 298 KKDGRNRTSTM 308 K+ GRNR Sbjct: 450 KEAGRNRVQLA 460 >UniRef50_B8GRD6 Diguanylate cyclase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GRD6_THISH Length = 464 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 78/310 (25%), Positives = 128/310 (41%), Gaps = 20/310 (6%) Query: 15 LIVPCMLTLAIPGVLPRFKAEQMMPAIAL--IVSVIASVVIGGAGSLAFPLPA--LIWCA 70 + + M A G LP +A ++ + ++ +A +++ PL ++ A Sbjct: 159 VFMLIMGIAAYLGQLPWAQARPVLVGLETGAMLLSLAGILVMAVLRTRSPLMTVYMVSLA 218 Query: 71 VRYTPQVTCLLT-----FVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG----IATM 121 V + LL I ++ + F + FS +A + Sbjct: 219 VFAQASLAFLLATPWNHLWWLGHGIFAAGFFMLSYGIVQAFHTTRSFSTVYSQMDMMAQL 278 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVM 178 ++ + +++ A D LT V +R L E S + L+++ Sbjct: 279 REQQAWTQEALLQVQEANRKLEQLASTDALTGVANRRQLVERADMEVPRSERHGAPLSLL 338 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 LD+D+FK IND+YGH GD+VL A IQ+ + L+AR+GGEEF V +P + Sbjct: 339 CLDLDHFKRINDDYGHLAGDEVLKQVAEAIQQSLRPSDLLARVGGEEFHVLLPDTDLAGA 398 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE+IR +E Q L++TVS+G D L AD LY++K Sbjct: 399 RDVAERIRVKLEGLDIPVQGVVLHVTVSVGCAQLGP----DGADMKSLTHTADERLYQAK 454 Query: 299 KDGRNRTSTM 308 GRNR Sbjct: 455 ALGRNRVVIA 464 >UniRef50_A1U4U5 Diguanylate cyclase n=2 Tax=Marinobacter RepID=A1U4U5_MARAV Length = 571 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 130/319 (40%), Gaps = 26/319 (8%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQM-------MPAIALIVSVIASVVIGGAGSLAFP 62 + ++ +P L L + + + + M A+ ++ V I A A Sbjct: 245 LNLSLITMPIFLLLFMMAIFETHEYFRTEHRVLQGMLALLVVTFVYGLFDIATALKPASS 304 Query: 63 LPAL-----IWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG 117 L AL ++ + L+ F +V N + + S +G Sbjct: 305 LAALMMVVTFSVSISLFRKGHPLVKFFLVGHTFFVVFNGFAVLYYKGLVQPNYINSHGVG 364 Query: 118 I------ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPS 168 I T+A + I S ++ +A D LT++++R E + + Sbjct: 365 IGIVLEALTLAFIISYRIKVLEDIRSKQDELKRQASTDPLTRLFNRRYFMAEGEYVLEQA 424 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + L+V+ +DID+FK++ND +GH GD VL A ++ D+ LVAR GGEEF + Sbjct: 425 RTSGEPLSVIAIDIDHFKAVNDTHGHNVGDLVLVEVASVFRQFSRDRDLVARFGGEEFVI 484 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLM 287 +P + +G AE+IR VE + +TVS+GV L + + Sbjct: 485 LLPGADLTEGFGCAERIRNAVEAMVIDGGDGLAVRVTVSVGVAEVNP----LLESVEGAV 540 Query: 288 VEADTCLYRSKKDGRNRTS 306 AD LY +K GRNR Sbjct: 541 KRADRSLYEAKAGGRNRVC 559 >UniRef50_C9YC42 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YC42_9BURK Length = 409 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 138/316 (43%), Gaps = 25/316 (7%) Query: 12 TGVLIVPCMLTLAIPGVLPRFKAEQ--MMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 TG+ + A + R ++ +P +A+ V ++ +++I P + Sbjct: 96 TGMGAAFALCAWACRPLEHRHRSWSGRWLPVLAMAVCIVFAMLITAIDQWVTPAITPFFI 155 Query: 70 AVRYTPQVTCLLTFVTGAV--EIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIM 127 A T L V A+ ++ +++I ++ +P + L + + C + Sbjct: 156 ACIVTSLTIYLRPHVAAALFGVAFVLFSTLIGMTQHNPEMLLSNRINGLAVCVIGFCLSV 215 Query: 128 VSFS---------------VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQT 172 + + + +++ D LT +++R+ E + + Sbjct: 216 LMWRKFTTIAVQKHQLEKAHTELQLKQRELERLTRQDGLTGLFNRNTFVELSTNELKRAK 275 Query: 173 QHLT---VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVA 229 + + ++LLD+D+FK IND +GH GD VL A+ + V LV R+GGEEF V Sbjct: 276 RQGSATTILLLDLDHFKRINDTWGHPAGDVVLRHVAQTMVNSVRSTDLVGRLGGEEFIVL 335 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVE 289 +P +AEKIR+ +E+ W+ K + +T SIG+ + + +F+ L E Sbjct: 336 LPHTTAEASRKIAEKIRQRLEVSDIRWEGKRIAVTASIGLS---GTTAEESREFDSLYTE 392 Query: 290 ADTCLYRSKKDGRNRT 305 AD LY +K+ GRNR Sbjct: 393 ADKALYLAKQRGRNRV 408 >UniRef50_Q2SME0 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SME0_HAHCH Length = 427 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 128/274 (46%), Gaps = 15/274 (5%) Query: 41 IALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVE--IVLVANSVI 98 +A + ++ +++ G++ F +P IW R + L + V E Sbjct: 159 LAYLHTLRETLLFSALGAIVFIIPFGIWEGSRLVRTLNHLTSAVNRMAEGEFKQQVPVKS 218 Query: 99 DISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRS 158 + VG+ + + +L A + S I +Q+ + D LT +Y+R Sbjct: 219 EDEVGALAKAFNLMNTQLHEAYKNL-----EDSRNKIAKQAEQLKELSIRDELTGLYNRR 273 Query: 159 GLYEA---LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK 215 E L + +L+ ++L DID+FK IND Y H GD+VL A+ + + + Sbjct: 274 FFNEEVKVLHANALRYGNGFCLVLGDIDFFKRINDGYSHVVGDEVLKQVAKILMNSIRNS 333 Query: 216 GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRAS 275 +VAR GGEE +A+P+ +P + M E+IRK +E P+ + + +T+S G+ Sbjct: 334 DIVARYGGEEMVLALPNTSPQAAMEMMERIRKTIEQHPWDSIAEGMKVTMSFGI-----C 388 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 T + F ++ AD LY++K +GRN+ ++ Sbjct: 389 DETNGEHFEHMLAVADELLYKAKNNGRNQVCSLS 422 >UniRef50_C7R6Y0 Diguanylate cyclase n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6Y0_KANKD Length = 469 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 71/296 (23%), Positives = 136/296 (45%), Gaps = 18/296 (6%) Query: 30 PRFKAEQMMPAIALIVSVIASVV--IGGAGSLAFPLPALIWCAVRYTPQVT-------CL 80 + + + +V+ +V I G L + + A+IW A+ Sbjct: 177 WWRLLTEYLSISLFLGAVLWMLVQNIRGYMPLQYGI-AMIWFALSCLSFSIGTVWDHQWW 235 Query: 81 LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK 140 L + A +L++ V+ + + S ++S + ++ + ++ + Sbjct: 236 LAHIIFASGFLLLSFGVVQAFLTT-GSFKTIYSQTELFQQIIREKKKSERALIELKAVNQ 294 Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECG 197 ++ A D LT+V +R + + + +++ L +M++D D+FK IND YGH+ G Sbjct: 295 KLEELAATDSLTRVANRREFMKRSEEEMSRSSRNSTDLCLMVIDFDHFKEINDQYGHQAG 354 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 DKVL F + ++++ L+ R+GGEEFA+ +P N + +AE++R+ +E + Sbjct: 355 DKVLKDFVKLAKEVMRPSDLLGRIGGEEFALLLPETNIRSAVKVAERLRQHIEEESIVIG 414 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 K + LT+SIGV + D K + AD LY++K GRNR + + Sbjct: 415 SKRIKLTISIGVAEYQP----KVDTVKKWLHRADEFLYQAKDKGRNRVVVEAFDAD 466 >UniRef50_C4XPG9 GGDEF domain protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XPG9_DESMR Length = 368 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 6/191 (3%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLD 181 + ++ ++A +L +++ A D LT + +R G +E + + + L++++LD Sbjct: 175 VVGMTQDISARKALEEELLRLAASDPLTGLANRRGFFEGAARMLGMARRCGTPLSMIMLD 234 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK++ND YGH+ GD VL A +++ + L R+GGEEFAV P + G+ + Sbjct: 235 IDHFKAVNDAYGHDAGDAVLRAVAGRLRESLRVSDLAGRVGGEEFAVLCPGTDLAGGVEL 294 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++R +E T + + +T S GV R + + AD LY +K+ G Sbjct: 295 AERLRLALEDMVVTADCRAVKVTASFGVAQCRDD---RDAAPSACLTRADRALYAAKRGG 351 Query: 302 RNRTSTMRYGE 312 RNR G Sbjct: 352 RNRVCLESDGS 362 >UniRef50_Q3IJX5 Putative uncharacterized protein n=2 Tax=Alteromonadales RepID=Q3IJX5_PSEHT Length = 621 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 73/323 (22%), Positives = 125/323 (38%), Gaps = 31/323 (9%) Query: 10 FSTGVLIVPCMLTLAI-------------------PGVLPRFKAEQMMPAIALIVSVIAS 50 F T V+ + C++T I P + AI + ++ Sbjct: 290 FPTLVVTLFCLITTPIVLGYYVVTTLLCIRQNPSEPQKALLLALCSFLAAIVYFIITVSG 349 Query: 51 VVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFV----TGAVEIVLVANSVIDISVGSPF 106 + I +AF + CA V L + ++ ++ D + Sbjct: 350 LYIFTNSRVAFVFICSLSCAFSLGYAVMKLFILQRDEQVTTQQTLIAKSAAQDALLHERL 409 Query: 107 SIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS 166 S+ + L + ++ + +++ D LT + +R + L Sbjct: 410 SLQESVRQELETQVDERTF-ELQVTLRELEEKNRELEQLNMEDPLTGIKNRRFFDKKLVM 468 Query: 167 PSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMG 222 + + L+V++LDID FK IND YGH GD+V+ A I+K + VAR G Sbjct: 469 ELRRSRREQTPLSVIMLDIDKFKVINDTYGHLTGDQVIRTAADTIKKQLQRPLDEVARYG 528 Query: 223 GEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD 282 GEEF V +P+ + +AEKIR + T+ T+S GV + A + ++ Sbjct: 529 GEEFVVLLPNTQNDGAIAIAEKIRHAIATNNVHVAGTTISFTISAGVYTSVAEDI---NN 585 Query: 283 FNKLMVEADTCLYRSKKDGRNRT 305 AD LY +K+ GRN+ Sbjct: 586 PEIFTERADKALYFAKQHGRNQV 608 >UniRef50_Q30WV4 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30WV4_DESDG Length = 398 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 21/206 (10%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLL 180 + V V A ++++++ A D LT + +R EA ++ + + L++++L Sbjct: 183 THVGVVLDVTAHRRMLEELSHMARTDPLTGLNNRRFFMEAARAEVERMQSSGRPLSLLML 242 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK +ND +GH+ GD VL + + + + + + AR+GGEEFAV +P + Sbjct: 243 DIDHFKRVNDTWGHDAGDMVLKQLSCCLAETMRGQDVCARLGGEEFAVLLPETGHAEACR 302 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL----------------TDDFN 284 AE +R+ V F +T S+G+ + ++ + Sbjct: 303 AAETLRQAVAGMAFA--GHGFSVTSSLGLTTLDSAGHAVSGQRPVPGGVAVSACCGQVVE 360 Query: 285 KLMVEADTCLYRSKKDGRNRTSTMRY 310 L+ AD LY +KK+GRNRT Sbjct: 361 ILLKRADIALYAAKKNGRNRTEVYPA 386 >UniRef50_C7LRA7 Diguanylate cyclase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LRA7_DESBD Length = 495 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 12/230 (5%) Query: 91 VLVANSVIDISVGSPFSIPQMF----SARLGIATMAICPIMVSFSVAAINSLMKQVALRA 146 +L S V P+ M S L + + ++V + +N +++AL A Sbjct: 270 LLAFASFPREMVLEPWKNHAMVYGGASIVLVLVVAGLSTLLVRGQI-RLNRQSRELALAA 328 Query: 147 DFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 D LT +R E+ + HL+ +++D+D+FK++ND YGH GD VLS Sbjct: 329 STDMLTGALNRRAFMESASREFARVCRYGGHLSCIMIDLDHFKNVNDTYGHAAGDLVLSS 388 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 A +I + + + R GGEEF + +P + +AE++R G+ + L L Sbjct: 389 SAHYIASRLREPDMFCRYGGEEFVILLPGTDRNGAATVAEELRAGLAGLDLQRGDEKLPL 448 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 T S GV A + L+ AD LY +K++GRNR ++ Sbjct: 449 TASFGVAEIHAQCA----TLDTLLSLADQALYEAKENGRNRVCLAPRQQQ 494 >UniRef50_C8WZ84 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZ84_DESRD Length = 550 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 86/185 (46%), Gaps = 7/185 (3%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLD 181 + + + + + + D LT +++R + + + LT+ +LD Sbjct: 357 VMAMVNDITHQQQYQEHLKRLSRTDELTGLFNRRHFITLMHKEFSRARRTHERLTLAMLD 416 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK +ND YGH+ GD VL R +++ V + AR GGEEFA+ P + + Sbjct: 417 IDHFKDVNDKYGHDVGDHVLQHLGRILREDVRPYDIAARYGGEEFAICFPDTDLSQADHI 476 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 E++R + T+ TVS G+ R + +D + L+ AD LY +K +G Sbjct: 477 CERLRTLCAASEVSRNGGTIGFTVSFGLSELRPEH----EDLDGLLKSADNALYAAKANG 532 Query: 302 RNRTS 306 RNR Sbjct: 533 RNRIE 537 >UniRef50_A3WKY5 Signaling protein with a ligand-binding sensor domain and GGDEF domain n=2 Tax=Idiomarina RepID=A3WKY5_9GAMM Length = 999 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 101/211 (47%), Gaps = 15/211 (7%) Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLM-------KQVALRADFDFLTQVYSRSGL 160 LG+A + + F L K++ A D LTQ+ +R Sbjct: 794 FWLSIIFALGLAATILVRARIRFLNNQRAQLELMVAEKTKELKGLARQDSLTQLGNRRAF 853 Query: 161 YEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGL 217 E L+ + Q L++ ++D+D+FKSIND + H GD+VL + + ++ D Sbjct: 854 DEQLQYEFKRCERSEQPLSLAIIDVDHFKSINDRFLHVIGDQVLIELSALLSNMLRDIDY 913 Query: 218 VARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYL 277 +AR GGEEFA+ +P + L AE+IR+ +E + L +TVSIGV S Sbjct: 914 IARWGGEEFALLMPETTAKEALQAAERIRQRIEDTSYQHLADELAVTVSIGVASS----- 968 Query: 278 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + + L+V AD LY++K+ GRNRT Sbjct: 969 EHYPNHSALLVAADKALYKAKQSGRNRTELA 999 >UniRef50_A1WM32 Diguanylate cyclase n=2 Tax=Burkholderiales RepID=A1WM32_VEREI Length = 612 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 119/294 (40%), Gaps = 10/294 (3%) Query: 17 VPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQ 76 P +L + P ++A + +A + S+ S S P + A + Sbjct: 320 APLILAAGFLALRPGYRAARFF-VLAFVASITGSFFTALTVSGLIPYTFANFHASEFGLL 378 Query: 77 VTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN 136 +L A + L++ D + +A L A + MV + + Sbjct: 379 ADMVLLSQALADRVKLLSEQR-DAAELREIEQKIATTALLKQANEDLER-MVLERTSELA 436 Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYG 193 + A D LT V +R E + + L+V+L+DID FK +ND YG Sbjct: 437 RARDEAEHFARIDMLTGVANRRYFEEVATMEFARTQRGQQALSVILIDIDLFKQVNDRYG 496 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD V+ AR ++ V + VAR+GGEEF+V +P + AE++R+ + Sbjct: 497 HAAGDAVIRAVARLAKESVRESDFVARIGGEEFSVLLPGIGQAPAFATAERLRERIAACV 556 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +L T S GV A F+ L+ AD LY +K+ GRN+ Sbjct: 557 VEHDGHSLGFTASFGVSEQVADDPG----FSSLLRRADQALYAAKQAGRNQVVV 606 >UniRef50_C7LVZ4 Diguanylate cyclase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVZ4_DESBD Length = 483 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 77/293 (26%), Positives = 131/293 (44%), Gaps = 18/293 (6%) Query: 23 LAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLT 82 L +PG LP + + + + + + + + G A L C P++ L+T Sbjct: 201 LFLPGTLPHAQQAEWINHLLSVAARLGKQEVRGYQVSALELKD---CKPGNPPELEELIT 257 Query: 83 FVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQV 142 + L + + + S ++ RL I + A + ++ ++ Sbjct: 258 L-----PLTLGSEPFGALVICSQ-DASKLGQDRLRILSSAANHLALA---MRNGLEFRKT 308 Query: 143 ALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDK 199 RAD D LT++ +R L+ + +H L++M++D+DYFKSIND YGH+ GD Sbjct: 309 KARADHDGLTRISNRHHFDIRLREEMKRHQRHQDELSLMMIDLDYFKSINDTYGHQAGDM 368 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 VL + + + + AR GGEEF V +P ++AE++R + F Q+K Sbjct: 369 VLQEVGKILNNTLRESDFPARYGGEEFVVILPQTREDQAWILAERLRSQIGQTFFRSQKK 428 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 +T SIG+ + LT L+ ADT LY++K +GRN E Sbjct: 429 RFRVTASIGIAGIKPCALTP---PETLLRNADTALYQAKTNGRNMVCCSAIEE 478 >UniRef50_Q1N3P2 Probable two-component response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N3P2_9GAMM Length = 364 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 76/327 (23%), Positives = 128/327 (39%), Gaps = 24/327 (7%) Query: 6 FSEQFST-GVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLP 64 FS FST ++ L I +++ I S + L +P Sbjct: 34 FSYTFSTLFIVTSILRLAHGILTQPFYAANPNAWRMTMYVLAFIHSCTLALLFILVLIIP 93 Query: 65 ALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 A+ V LL+ + ++ + S+ P ++ + Sbjct: 94 EYRDLAMAVALIVVGLLSGASASLSPKPIFTQFYIGSLAFPATLVSFLVEEFRFLSPLFA 153 Query: 125 PIMVSFSV----------------AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP- 167 + F + ++ + D LT +Y+R AL Sbjct: 154 ATWIYFIFLGRRFYNEYQRAFHIEMRLKENQVKLERLNETDTLTGIYNRQYFDNALDMQW 213 Query: 168 --SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVG-DKGLVARMGGE 224 + + L+++ LD+D+FK INDN+GH GD+VL A +I ++AR GGE Sbjct: 214 DLASRSENSLSILFLDLDHFKKINDNFGHLAGDQVLCHAAHLFSEIARRKTDMIARYGGE 273 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EFA+ +P+ D L +AE+IR +E P Q ++LTVSIGV + + Sbjct: 274 EFAIILPATEKQDALDLAEQIRHAIENTPCRSDQGLIHLTVSIGV---NSVVPSPQGSPV 330 Query: 285 KLMVEADTCLYRSKKDGRNRTSTMRYG 311 + +AD LY++K +GRN+ Sbjct: 331 TFLDQADQALYQAKNNGRNQIMFAAAQ 357 >UniRef50_A6Q2P1 Putative uncharacterized protein n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2P1_NITSB Length = 486 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 100/205 (48%), Gaps = 13/205 (6%) Query: 107 SIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK- 165 +F + + ++ I + AI+ + + A D LT +++R E + Sbjct: 291 MFDTIFWQNILLGSILILFLFTILFYFAISRI--KFEEMATVDKLTGLFNRHKFQEIAEI 348 Query: 166 --SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 S + + L+V+L DID+FK IND YGH+ GD VL A+ I++ + R GG Sbjct: 349 EIKRSHRHKRPLSVILFDIDHFKKINDTYGHDIGDVVLRELAKIIKQNIRKYDYAIRWGG 408 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF 283 EEF + P + MAEK+RK VE F K +T+S+GV S + + Sbjct: 409 EEFLILTPETDEKQAFAMAEKLRKAVESHTFPEVGK---VTISLGVASVDPN-----ESI 460 Query: 284 NKLMVEADTCLYRSKKDGRNRTSTM 308 ++ + +AD LY SK GRN+T+ Sbjct: 461 DQAIKKADNALYGSKLGGRNKTTVA 485 >UniRef50_Q30SB7 Diguanylate cyclase (GGDEF domain) n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SB7_SULDN Length = 487 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 138/338 (40%), Gaps = 42/338 (12%) Query: 5 WFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLP 64 WF +L+ P M+ L + + ++S+ ++V+ + F LP Sbjct: 158 WFFGDSIGILLLTPIMVLLKENYKSLKNYDFNIQNISIALLSIYLAIVLFSFTDINFMLP 217 Query: 65 A--------LIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP---FSIPQMFS 113 L+W + ++ + ++ I ++ + S+ Q F Sbjct: 218 TTPLLFVLLLLWIVYKQGVLPGMIMALLITSIAIYYTSSGLGPFSIFGLKGTTIYLQEFI 277 Query: 114 ARLGIATMAICPI--------------------MVSFSVAAINSLMKQVALRADFDFLTQ 153 A L I T+ + MV ++ +++ A D LT Sbjct: 278 AILVITTLFFGVLHQEINESKAKLEELNKNLENMVKEKTKSLMEANQKLNNLASKDSLTN 337 Query: 154 VYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQK 210 +++R + E + S + L ++++DID+FK +ND YGH+ GD+V+ I K Sbjct: 338 IFNRRIIDEFISKETIKSKRYNNSLALIMIDIDHFKEVNDKYGHQVGDEVILSLVDIISK 397 Query: 211 IVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVG 270 + + + R GGEEF + +P N ++A+ IRK V+ F + T+S+GV Sbjct: 398 NIRESDIFGRWGGEEFIILLPETNLNQATIVAQNIRKKVQEYRFDKVGQK---TISLGVS 454 Query: 271 SGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 ++ DD + D LY++K GRNR ++ Sbjct: 455 EFNSN-----DDSTVFIKRVDDALYKAKATGRNRVVSL 487 >UniRef50_Q2RNW0 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RNW0_RHORT Length = 360 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 135/287 (47%), Gaps = 24/287 (8%) Query: 33 KAEQMMPAIALIVSVIASVVIGGAG-------SLAFPLPALIWCAVRYTPQVTCLL-TFV 84 + + + +VI +VV+GG ++ FP+ R V+ + T Sbjct: 86 RLVAALIGHIIGGAVILTVVLGGKAQDAVFSWAVLFPVLPFFVLGQRLGLLVSIVFATTA 145 Query: 85 TGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVAL 144 T V I+ V + S +PF++ +A C ++ F +Q+ Sbjct: 146 TVGVTILAVLDGAQGFSWIAPFNLA---------GALAGCTVLAYFYEGTRAKAARQLET 196 Query: 145 RADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVL 201 A D LT + +R GL +A L + L++++LD+D+FKSIND YGHE GD VL Sbjct: 197 LAKSDPLTGLANRRGLLDAFGGAVLTRSRAPHRLSLLVLDLDHFKSINDRYGHEAGDGVL 256 Query: 202 SVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL 261 A I+ ++ L+AR+GGEEFA+ +P + +AEKIRK +E +L Sbjct: 257 CHVAHVIKGMIRANDLIARIGGEEFALLLPDTDLAGAREVAEKIRKAIESTALIGPGGSL 316 Query: 262 YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 +TVSIGV Y DF L AD LY++KK GRNR S Sbjct: 317 SVTVSIGVAELDPQYP----DFAALFSSADHRLYQAKKAGRNRVSAA 359 >UniRef50_Q67JR0 Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67JR0_SYMTH Length = 425 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 7/190 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLL 180 + V ++A L + A D LT Y+R E + + +++L+ Sbjct: 219 VLVCVFRDISARKRLESDLKHLATTDGLTGAYNRRSFVEVCGQELQRADRRARPTSLLLM 278 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK +ND +GH GD+VL ++++ + +V R+GG+EFAV +P+ Sbjct: 279 DIDHFKRLNDRFGHAAGDEVLRQIVETGRRVLRSEDVVGRIGGDEFAVLLPATTLEQAGR 338 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE++R E + T TVS GV + +L+ AD LY +K Sbjct: 339 VAEQLRTTYERLAVPARGGTATFTVSFGVAEWKPHLR----TVEELLQRADRALYAAKNA 394 Query: 301 GRNRTSTMRY 310 GRN T Sbjct: 395 GRNCVRTEEA 404 >UniRef50_Q2BQL8 Probable two-component response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQL8_9GAMM Length = 505 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 69/295 (23%), Positives = 125/295 (42%), Gaps = 17/295 (5%) Query: 32 FKAEQMMPAIALIVSVIASVVIGGAGSLAFPLP-----ALIWCAVRYTPQVTCLLTFVTG 86 E++ P IA + + ++ G L L L+ C + ++ L +T Sbjct: 214 HGIEKIWPMIATLRNEFNILLPSSKGELTTLLAEDQPDLLLLCTEQQWQEMLSLCQEITA 273 Query: 87 AVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV---AAINSLMKQVA 143 + + + + + + + T+ P ++ + + Q+A Sbjct: 274 NKDDYTLPVAFVSADLDDQRELDAYNAGAADFLTLNRAPAVLQSRIQILMQLKQSQDQLA 333 Query: 144 LRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 A D LTQV +R E + + + L +++LDID+FK ND YGH GD Sbjct: 334 RSARVDGLTQVNNRREFERNIEMEWRRAQRSKRSLALIMLDIDHFKPFNDGYGHLAGDGC 393 Query: 201 LSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-- 257 L A+ I+ + + +V R GGEEF V +P + ++AE+IRK + + Sbjct: 394 LRTVAQTIKHSIQRAQDMVCRYGGEEFVVILPETDLDGAQMIAERIRKAIAKLKINHEFS 453 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 +T+S GV S ++L++ AD LY++K GRN+ + ++ E Sbjct: 454 STDNTITISAGVACLSPSQ---EGSPHELILLADQGLYQAKAQGRNQVAIVQTSE 505 >UniRef50_B1KMS8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KMS8_SHEWM Length = 482 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 8/245 (3%) Query: 65 ALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 L + A +Y + + + +L + + +++ S +I + I Sbjct: 230 PLTFIAKKYRLEYLSEIQKHISYDDTILDSRMDLTMTLPSNETIKVEMAFSTLIFEKKKL 289 Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLD 181 I + L Q+ + A D LT Y+R E + +Q Q T++L+D Sbjct: 290 VITAITDITERKRLETQLRILASTDPLTGAYNRRCFNELSQKSMSSTERQEQEFTILLID 349 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FKSIND +GH GD VL + I + + ++ R GGEEF VA+P+ + + Sbjct: 350 LDFFKSINDKFGHAAGDDVLIETVKAINTCIRESDILGRYGGEEFVVALPNSDNKKAREV 409 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 A +IR +E Q + LT SIG+ + + K + +ADT LY +K +G Sbjct: 410 ANRIRLCIENMVVKTQGHDIKLTASIGLATSSGGHQ-----LEKQINQADTYLYYAKDNG 464 Query: 302 RNRTS 306 RN+ Sbjct: 465 RNQVV 469 >UniRef50_B3E5R5 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Geobacter RepID=B3E5R5_GEOLS Length = 316 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 116/238 (48%), Gaps = 11/238 (4%) Query: 76 QVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAI 135 LLT G +++ + D + P + ++ RL A + +++ Sbjct: 80 TYLILLTSQEGKEKLIEGLEAGADEYLIKPVNEAELM-VRLKTARRILDLE------SSL 132 Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL---TVMLLDIDYFKSINDNY 192 ++++ + D LT ++R L + L + ++L +++++D+D+FK IND + Sbjct: 133 QKSLEEIKQLSIRDALTGAFNRGYLDQHLPHEIRRADRYLRDLSLIMMDLDHFKKINDTW 192 Query: 193 GHECGDKVLSVFARHIQKIVG-DKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 GH+ GD VL R I + + VAR GGEEF + +P + ++AE++R +E Sbjct: 193 GHQAGDAVLQHCIRIIAGTIRHEVDWVARYGGEEFVLVLPETDRTGCRVVAERLRSLIEA 252 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 P +++ TL +T S G + + + ++L+ AD CLY +K+ GRNR + Sbjct: 253 APCSFRSATLGITASFGTVTRTPADSRAINSPDQLLNLADQCLYAAKQAGRNRVVAAQ 310 >UniRef50_C5T8F5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8F5_ACIDE Length = 1152 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 12/196 (6%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLL 180 + ++ V + + A D LT + +R L+ ++ + +++L Sbjct: 959 GRLWIAKDVTERRRHEQTLERLATTDALTGLANRRAFMARLEEERMRPSMGGRGGMLIML 1018 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQ-KIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 D+D+FK +ND +GH GD+VL AR ++ ++ L R+GGEEFAV +P + L Sbjct: 1019 DLDHFKRVNDTWGHAAGDEVLVHLARLLRGDLLRATDLAGRLGGEEFAVLLPDTTAEEAL 1078 Query: 240 LMAEKIRKGVELQPFTWQQK-TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 +AE++R+ +E TL +T+S+GV L ++ AD LY +K Sbjct: 1079 GVAERLRRALEQSKIHVGDGATLQVTMSLGVAPITGDAL-------AVLAHADIALYEAK 1131 Query: 299 KDGRNRTSTMRYGEEV 314 GRN+ R E V Sbjct: 1132 NTGRNKVVLARSDEPV 1147 >UniRef50_A1SRL2 Diguanylate cyclase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRL2_PSYIN Length = 611 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 73/356 (20%), Positives = 139/356 (39%), Gaps = 56/356 (15%) Query: 3 ADWFSEQFSTGVLIVPCMLTLAIPGVL-----------PRFKAEQMMPAIALIVSVI--- 48 ++WFS+ + + ++ + ++ +++ S+I Sbjct: 257 SNWFSDFSPVFFIALVMIMATQFTRSFLNTATESVNIDRLLQLIFVVAGLSIFFSLIGYR 316 Query: 49 -ASVVIGGAGSLAFPLPALI-----WCAVRYTPQVTC-LLTFVTGAVEIVLVANSVIDIS 101 +V++G L +I Y + G + VL +I ++ Sbjct: 317 DYAVILGLLSMLTSIFFPVIGWVIYLKGRSYARFYILGWSIWSLGMILAVLQHIGMIPVT 376 Query: 102 VGSPFSIPQMFSARLGIATMAIC----------------------------PIMVSFSVA 133 + S S FS + + A+ +V+ Sbjct: 377 LYSDLSTGLCFSIEAALLSFALADRFNQLRNEKEEIELIHIEHLKNDQQLLEQLVTERTE 436 Query: 134 AINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFKSIND 190 + + L A D LT + +R +E SL+ L +M++D+D+FKSIND Sbjct: 437 ELEQAKDRAELLARTDPLTNMLNRRAFFECGSVEIKRSLRYKSSLAIMMIDLDHFKSIND 496 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 NYGH GD L A ++ ++ + ++ R+GGEEFAV +P + +A+++R G+E Sbjct: 497 NYGHAAGDNALLSVANTLKAMIRNVDIIGRIGGEEFAVIIPHADLEIATELAQRLRLGIE 556 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + + +T GV S ++ ++ + AD LY +K++GRNR Sbjct: 557 KVEIIIDNQPVKITACFGVTSID----IKSESLDEALKRADKALYLAKENGRNRVE 608 >UniRef50_Q0A8G7 Diguanylate cyclase n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8G7_ALHEH Length = 237 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 11/187 (5%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTVMLLDIDYFK 186 + +++ A D LT + +R L + + + V++ D+D+FK Sbjct: 56 RDITERKRDQERIRYLATTDALTGIMNRGEFTRHLTKEIERAARFNRPVAVVMYDLDHFK 115 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 +ND YGH+ GD+VL + + + AR GGEEF + +P + + AE++R Sbjct: 116 RVNDTYGHDAGDEVLKTAVAQVNNAIRRVDVHARWGGEEFILLLPETDLAAAVKSAERLR 175 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + PF + +T S GV + D F+ L+ AD LY +K GRNR Sbjct: 176 AAIAEHPFK---QPERVTASFGVTTLGPR-----DRFDVLIKRADDALYLAKHAGRNRVE 227 Query: 307 TMRYGEE 313 + Sbjct: 228 ALSPEAP 234 >UniRef50_Q2W1M0 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=3 Tax=Magnetospirillum RepID=Q2W1M0_MAGSA Length = 477 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 9/188 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVML 179 + I + + + Q+ A D LT +R + A + + +++ ++V++ Sbjct: 292 MGTIGIVTDITERKHMESQLRHLATTDELTGCLNRRAFFVAAEQELERASRYGNAVSVLM 351 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 +DID+FK +ND +GH GDK L I+ + + R+GGEEFA +P L Sbjct: 352 IDIDHFKQVNDRHGHAVGDKALKAATAAIRANLREIDSFGRLGGEEFAAMLPETTLAGAL 411 Query: 240 LMAEKIRKGVELQPFTWQQK--TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 L+AE++R+ VE L LT S+GV + + ++++ ADT LYR+ Sbjct: 412 LVAERLRQAVEAIALPLGDDQPPLRLTTSLGVAERQPGEVA----VDQVLARADTALYRA 467 Query: 298 KKDGRNRT 305 K +GRNR Sbjct: 468 KAEGRNRV 475 >UniRef50_B9ZM04 Diguanylate cyclase n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZM04_9GAMM Length = 291 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 76/280 (27%), Positives = 124/280 (44%), Gaps = 16/280 (5%) Query: 43 LIVSVIASVVIGGAGSL-AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS 101 L ++V+G AG + A A + + + T L L I ++ Sbjct: 2 LNWVANGAIVLGAAGLIYAQWNLARLLRELPESRVRTGWLLMFVLIPIFTLGYLGFIPLN 61 Query: 102 VGSPFSIPQMFSARLGIA--TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSG 159 G SIP + + + + +++++S + ++ + D LT +++R Sbjct: 62 WGLYHSIPDLLVPIIFLLGGSFVCSVVLLTYSSVESIRRITRLEHESITDPLTGLFNRRH 121 Query: 160 LYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKG 216 + L S + Q L+V++LDID FK IND GH GD +L A+ +++ + Sbjct: 122 MDRRLDEEVARSRRYGQPLSVVMLDIDEFKGINDRLGHLAGDYILESIAQRLRQNLRRVD 181 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK---------TLYLTVSI 267 L AR GGEEF V P + L +AEK+R + P + LY+TVS+ Sbjct: 182 LAARFGGEEFVVIAPHTDQDAALQLAEKLRSEIAQTPIILKGHEHVPPCAPDELYVTVSV 241 Query: 268 GVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 GV S D+ + L+ AD LYR+K GRNR + Sbjct: 242 GVASLNIE-PDSRDNADFLLQRADDALYRAKAGGRNRCES 280 >UniRef50_A4BIU7 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Reinekea blandensis MED297 RepID=A4BIU7_9GAMM Length = 318 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 7/191 (3%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH-- 174 +A + ++ S + + ++A + D LTQ+Y+R+ E L + +Q +H Sbjct: 127 NLAVIVYDVTDIATSKLELKAANDRLAQLSRTDGLTQLYNRAYWEEMLSNEFKRQKRHAH 186 Query: 175 -LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 L++++ DID+FK +ND YGH+ GD V+ A ++ + + R GGEEFA+ + Sbjct: 187 DLSLIMFDIDHFKKVNDTYGHQVGDDVIRAVAEEVRHNSRNTDIAGRYGGEEFALLLIDS 246 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 + + LL AE++RK +E + + + L +TVS+GV + S+ +N + AD Sbjct: 247 DAENALLFAERLRKAIENRRVSTPEGELQVTVSLGVAPWKESFHH----YNAWIEAADKA 302 Query: 294 LYRSKKDGRNR 304 LY SK +GRNR Sbjct: 303 LYTSKDEGRNR 313 >UniRef50_Q315M6 Diguanylate cyclase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315M6_DESDG Length = 403 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 132/303 (43%), Gaps = 12/303 (3%) Query: 17 VPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVI---GGAGSLAFPLPALIWCAVRY 73 C+L + A A+ + + V+ + F LP + Sbjct: 98 AYCVLYFFLRTSGMLKVASDFALALTVTLGVLLIWRLNDQIAYILWLFALPPAAFFTFGT 157 Query: 74 TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM-AICPIMVSFSV 132 L + + V+ + + S ++ +A ++ A+ + + Sbjct: 158 KRAAVALGLLLIALLLSPFVSPAAMPPETFSLSYFVRVIAAFFTLSLFSALGEYSRAHTQ 217 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSIN 189 + +L +++ A D LT + +R G+Y+ L + T+ +V+L D+D+FK++N Sbjct: 218 RTLVALTREMEQCACTDPLTGLLNRRGIYDRLNEERARATRSGSTFSVILCDVDHFKNVN 277 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D +GH+CGD VL A H ++ V + +V R GGEEF +P + L +AEK+R V Sbjct: 278 DCFGHQCGDHVLHQLAEHFRRSVRGQDVVCRWGGEEFLFILPETDEQGALNLAEKLRSTV 337 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 E P + + +T+S+GV TLT+ + AD LY +K+ GRN+ + Sbjct: 338 EQTPVNYHGMPIDITLSLGV-----QECTLTESTEFHIRVADQKLYIAKEHGRNKVVSGN 392 Query: 310 YGE 312 E Sbjct: 393 IEE 395 >UniRef50_C0QBK1 GGDEF domain family protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QBK1_DESAH Length = 430 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 57/180 (31%), Positives = 97/180 (53%), Gaps = 11/180 (6%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSI 188 + ++ + + + +A D LT +++R + L S + ++ L+++L DID+FK + Sbjct: 258 LQSLEGINELLEKQASTDALTGIFNRMKFNQTLTSEIKRAKRYRVALSLILFDIDHFKQV 317 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND+YGH GD VL AR + + + + AR GGEEF + P + + +AEK+R Sbjct: 318 NDSYGHLSGDTVLKHLARLVASNLREIDIFARWGGEEFVIQAPETSLESAIKLAEKLRSK 377 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 +E F +K +TVS GV + R+S + L+ AD LYR+K+ GRN+ + Sbjct: 378 IENYVFPAPKK---ITVSFGVATFRSSDNDI-----TLVNRADEALYRAKEGGRNQVVSH 429 >UniRef50_A0L7F5 Cyclic nucleotide-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7F5_MAGSM Length = 320 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 9/184 (4%) Query: 129 SFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYF 185 + + + +++ A D LT +Y+R E+++ + L++++LD+D+F Sbjct: 139 NRVIIEGSERQRKLETFAKVDPLTGIYNRRWFDESMQRQMRRVEHSQNPLSLIMLDVDHF 198 Query: 186 KSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKI 245 K ND +GH+ GD+ L A I + + AR GGEEFAV +P + V G ++AE++ Sbjct: 199 KRYNDTHGHQGGDEALIALAHTISLHLRPGDIAARYGGEEFAVVLPDTDAVSGRMIAERL 258 Query: 246 RKGVELQPFTWQQKT--LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 R VE + +T+S+GV + D ++L+ AD LY++K GRN Sbjct: 259 RTAVEALEIKDDEGNSLSGITISLGVAQTSGTV----DSVSELIATADAALYQAKNQGRN 314 Query: 304 RTST 307 R Sbjct: 315 RVVV 318 >UniRef50_UPI0000384142 COG2199: FOG: GGDEF domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI0000384142 Length = 445 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 7/186 (3%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLD 181 + + V L +++ A D LT + +R E + ++ + L V++LD Sbjct: 262 FVALKEDVTETKRLQEELTRLASQDSLTGIANRRHFLERAHTEIIRAGRAKTPLAVLMLD 321 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK IND YGH GD L A + + + L R+GGEEF + P + Sbjct: 322 VDHFKKINDEYGHAAGDAALKALADTCRSTLRETDLFGRLGGEEFGILFPGDDLNAATEA 381 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++R + T T+ +T S+G+ + + + AD LY +K+ G Sbjct: 382 AERLRLAIAATKITIGGATIAITASLGLSLLQDGE----KSIDAALSRADQALYVAKQAG 437 Query: 302 RNRTST 307 RNR Sbjct: 438 RNRLEI 443 >UniRef50_UPI0001C3940A response regulator receiver modulated diguanylate cyclase n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C3940A Length = 392 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 9/190 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDID 183 + S A+ +++ A +D LTQV +R E L ++ + + ++L D+D Sbjct: 180 ALERSRIALKKTNQELQRLALYDDLTQVANRRRFNEYLAYNWHRCSREQEPIALILCDVD 239 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 YFK ND +GH+ GD L AR I + LVAR GGEEFA+ +P+ + +A Sbjct: 240 YFKPYNDTFGHQAGDDCLHKIARAISGAIQRSVDLVARYGGEEFAIILPNTPINGAVKVA 299 Query: 243 EKIRKGVELQPFTWQQKTLY--LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 E+IRK VE +TVS+GV + L+ +AD LY++K Sbjct: 300 ERIRKQVENLRVPHPGSQSSDYVTVSLGVAC---KIPHSELSVDSLIAQADEALYQAKNQ 356 Query: 301 GRNRTSTMRY 310 GRN T Sbjct: 357 GRNCTVIAES 366 >UniRef50_B9ZRW3 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZRW3_9GAMM Length = 791 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 11/185 (5%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLD 181 I + + L + +A +D LT +R L + + + +++LLD Sbjct: 611 YIAMFHDITRQKELEAALEHQAFYDPLTDAANRGYFETLLDQEARRAQRYAHPCSLLLLD 670 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK IND +GHE GD+VL ++ + + ++ R GGEEF V +P + G + Sbjct: 671 IDHFKRINDTFGHEVGDEVLRFLVHALKGRLREADVLGRWGGEEFVVLLPGTDAERGQHV 730 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++R+ V F +T+S+GV R + + AD +Y +KK G Sbjct: 731 AEQLREQVTATAFPCVGL---VTISLGVAECRP-----GESIRDWVKRADEAMYVAKKGG 782 Query: 302 RNRTS 306 RNR Sbjct: 783 RNRVV 787 >UniRef50_A3Y5H4 Diguanylate cyclase (GGDEF domain) n=1 Tax=Marinomonas sp. MED121 RepID=A3Y5H4_9GAMM Length = 419 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 6/203 (2%) Query: 111 MFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK 170 + + + I T + I ++ A D LT +Y+R L + Sbjct: 197 LLLSSIAIITAFVIGIGYKKVQQIREEYELELIEMATKDKLTNIYNRRSFEARLLQDLKQ 256 Query: 171 Q---TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 L+++L D+D+FK +ND YGH+ GD VL++ A Q+ V +VAR GGEEF Sbjct: 257 YDKFQTELSIILFDVDHFKFVNDTYGHQAGDSVLTLLAEIAQQTVRSNDIVARYGGEEFI 316 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + +P+ ++AEK+R +E F Q + +T+S+GV + + L+ Sbjct: 317 ILLPNTGKNGSQVIAEKLRSAIENAAFDTQSYKIQITISLGVACISDVQHP---NLDNLI 373 Query: 288 VEADTCLYRSKKDGRNRTSTMRY 310 AD LY +K +GRN+ S M+ Sbjct: 374 KSADDALYYAKHNGRNQVSYMQT 396 >UniRef50_Q087A8 Diguanylate cyclase n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q087A8_SHEFN Length = 321 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 10/219 (4%) Query: 93 VANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLT 152 +++ +I + S ++ I I +S + A L ++ A+ D LT Sbjct: 110 LSDDIIVDTPASLIVYHEVKQPLYNHKGTLIGLIGISTDITAAYHLRSKLERLANTDPLT 169 Query: 153 QVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQ 209 +++R + + + Q ++M++DID FK +ND YGH GD+V+ A Sbjct: 170 GLFNRRSFTSFCEHEFFRATRYFQPFSLMIIDIDLFKKVNDTYGHLVGDEVIKRVANICN 229 Query: 210 KIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGV 269 + V + ++AR+GGEEFA+ +P + ++AE++R+ + +QKT +T+SIGV Sbjct: 230 EHVREADVLARIGGEEFAILLPDTDIDSAYVLAERLREAQQQYE---EQKTPSITISIGV 286 Query: 270 GSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + R+ F ++ AD LY SK GRN + Sbjct: 287 ATLRSQ----DKAFLEIFKRADKALYSSKNVGRNSVNVA 321 >UniRef50_A3WMD3 Phytochrome sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Idiomarina baltica OS145 RepID=A3WMD3_9GAMM Length = 689 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 14/219 (6%) Query: 94 ANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQ 153 + I + + L I + + +++ D LTQ Sbjct: 480 VDGYAPIWTEIQIEAAKTLAEDLAIGA---SAYQIEQLNQELTEANQRLEHLVHTDALTQ 536 Query: 154 VYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQK 210 V++R + + L+ + + L V+LLDID+FK +ND+YGH+ GDKVL + + I + Sbjct: 537 VWNRYHMEQTLEEEVKRCKRHGRDLAVILLDIDHFKRVNDDYGHDVGDKVLKLISEAIHQ 596 Query: 211 IVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVG 270 + + R GGEEF + P + +AE++R+ + F K +T S GV Sbjct: 597 WLRSSDVFGRWGGEEFLIIAPETDLESANQLAERLRRRLSNLQF---DKVGQVTASFGVA 653 Query: 271 SGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 S +D N L+ AD LY+ K+ GRN Sbjct: 654 ELLPS-----EDRNSLVKRADNALYQVKESGRNSVEVSP 687 >UniRef50_Q2SNU2 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SNU2_HAHCH Length = 367 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 26/309 (8%) Query: 13 GVLIVPCMLTL-AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAV 71 L + C L L + + +V ++ +I G G + +W V Sbjct: 55 SALFLFCALMLMNVISYNRTLNQQLFKTLFLWLVGLLFLYLIAGGGESNTGI---LWFYV 111 Query: 72 RYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS-----IPQMFSARLGIATMAICPI 126 + P V + TG+ ++++ + I F R + Sbjct: 112 -FPPFVFYVAGLRTGSWMLIIMVALIAIIFRFPELPWVRTVYNLDFQLRFAATVSFVSVF 170 Query: 127 MVSFSVAAINSLMKQV-------ALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLT 176 + +++ A D LTQ+ +R + + L+ + + H + Sbjct: 171 AFVMDHSRRK-ARQELINMARLYEKAARTDELTQLPNRRDMQQQLEKEYFRYKRHGSHFS 229 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 V+LLDID+FK IND YGH+ GD VL + + + AR GGEEF + +P + V Sbjct: 230 VILLDIDHFKMINDTYGHDAGDFVLMKISELLVNACRKMDMAARWGGEEFLIQLPDTSLV 289 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 L +AE++RK +E P ++ + + T+S GV S ++ D L+ +AD LY+ Sbjct: 290 QALTLAERLRKSIEASPLQYKNQEIRYTISCGVCS-----ISQAKDLASLLKQADVNLYQ 344 Query: 297 SKKDGRNRT 305 +K GRN Sbjct: 345 AKIKGRNMV 353 >UniRef50_C6BZS4 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZS4_DESAD Length = 635 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 8/185 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDID 183 + + + ++++V A D+LT ++R ++ + L +M+LDID Sbjct: 451 ITAHDITEQKEMLEEVKRLASTDYLTGAHNRRHFMSRAETELDRLTRYGGELYLMMLDID 510 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK+IND YGH GD VL + + + + R+GGEEFA + + + +AE Sbjct: 511 HFKNINDTYGHSVGDVVLKEMVKCCIETLRTSDVFGRLGGEEFAALLVHGSIDSAIQVAE 570 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 ++R+ +E + + LTVSIG+ A +D + AD CLY++K+ GRN Sbjct: 571 RLREAIEDMEVRIGRHVVKLTVSIGLTMVCA-----DEDIEIALKHADKCLYQAKEQGRN 625 Query: 304 RTSTM 308 R + Sbjct: 626 RVVSY 630 >UniRef50_A0L4D8 Diguanylate cyclase n=2 Tax=cellular organisms RepID=A0L4D8_MAGSM Length = 464 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 57/233 (24%), Positives = 104/233 (44%), Gaps = 4/233 (1%) Query: 81 LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK 140 L+ + + + + + + Q S ++ + + + +K Sbjct: 223 LSRIRTTTRLGDLESLRGALVTEAEALRSQTQSLATSLSESQAQLDLTRKQLQQVQDDLK 282 Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECG 197 + + D LTQV +R L+++L + + + L+++++D+D+FK IND YGH G Sbjct: 283 KAKEESLTDPLTQVANRRALFQSLTRETARTRRYGEPLSLIIIDLDHFKKINDTYGHPVG 342 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D+VL A H + ++ D +AR GGEEF +P + AE+IR V F + Sbjct: 343 DRVLKEVAGHARALLRDSDTLARYGGEEFVALLPETTLPQAMEKAEQIRLSVAAMRFKLK 402 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 ++L ++ S+GV ++ + AD LYR+K GRN Sbjct: 403 GESLSISASLGVAQLDDGASQDANN-EAFVHRADQALYRAKSGGRNCVIQADP 454 >UniRef50_B3PIC1 Sensory box/GGDEF family protein n=5 Tax=Gammaproteobacteria RepID=B3PIC1_CELJU Length = 322 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 7/194 (3%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ--- 173 I + + + A KQ+ + D LT +++R L + + Sbjct: 130 HICVIIYDVTDTAVNKIAQQHANKQLQNLSRTDHLTSLFNRGYWELRLIQEFKRYDRYES 189 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 ++++LDID+FK INDNYGH GD+ + +R I++ V D + R GGEEF + + S Sbjct: 190 PSSLIMLDIDHFKKINDNYGHTVGDEAIRCVSRVIKEQVRDLDIAGRYGGEEFGIILTST 249 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 N ++AE++R +E Q + ++ T+S+GV D + + +AD Sbjct: 250 NGDGACVIAERLRSIIEKQTVYAEGHEIHFTISLGVAELNDHMH----DHRQWIEKADHA 305 Query: 294 LYRSKKDGRNRTST 307 LY+SK+ GRNR + Sbjct: 306 LYKSKESGRNRCTL 319 >UniRef50_Q04S93 GGDEF domain receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04S93_LEPBJ Length = 330 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 67/280 (23%), Positives = 113/280 (40%), Gaps = 16/280 (5%) Query: 46 SVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP 105 + + I G F + LI ++T + + + +S V P Sbjct: 54 CSLILLDILLPGVTGFEILELIREKKELKDIPVIMITALKESNVLQKAFDSGAIDYVIKP 113 Query: 106 FSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVAL-------RADFDFLTQVYSRS 158 F ++ + + + L Q+ + D LT +Y+R Sbjct: 114 FDATELLARVRSALRLFEEMTRRKEREKELEKLTDQLQEVNSYLVAISRTDSLTGLYNRR 173 Query: 159 GLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GD 214 YE L + + + +++LDID+FK ND YGH+ GD+ L AR I+ Sbjct: 174 YFYEILTTEWKRCWRTGAGIALIMLDIDHFKLYNDTYGHQGGDQCLKQVARAIRDCARRA 233 Query: 215 KGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSG 272 + AR GGEEFAV +P N + ++++ I + VE +TVSIG+ + Sbjct: 234 GDVAARYGGEEFAVILPETNESNAVVVSRNILENVEKMAIPHSASKTNSIVTVSIGMATL 293 Query: 273 RASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 S + +L+ AD LY +K++GRN G+ Sbjct: 294 SPS---PENSITELIERADKALYLAKEEGRNCLRFYPQGD 330 >UniRef50_A4VQQ9 GGDEF domain protein n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VQQ9_PSEU5 Length = 466 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 19/238 (7%) Query: 71 VRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSF 130 V T + ++ V+ VI +++ + + S+R Sbjct: 243 VVVLLWPTDFMAAFQERKTLLTVSAGVISLALSVVALLIFLLSSRYF------------Q 290 Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKS 187 S+A + Q+A A+ D LT V SR L++ + +H L++++LDID+FK Sbjct: 291 SIARLRLAHGQLAQLANTDVLTGVSSRRAFLAGLEAELARARRHNESLSLLMLDIDHFKR 350 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 +ND +GH GD VL F+ ++ L+ R+GGEEFA+ +P + +AEKIR Sbjct: 351 VNDVHGHPIGDAVLKQFSETCAGMLRAHDLLGRLGGEEFAIVLPHTDAEGARCVAEKIRT 410 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 V P + +TVSIG+ L + ++LM AD LY +K+ GRN+ Sbjct: 411 AVAQTPMPTAAGDITVTVSIGLAQMEG----LPGEVDQLMARADQALYEAKRGGRNQV 464 >UniRef50_Q489Q4 Sensory box/GGDEF domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q489Q4_COLP3 Length = 451 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 8/187 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLL 180 I S V + L ++ L A+ D LT +Y+R E + + ++ +T++ + Sbjct: 267 ALIGFSTDVTELFKLKEEFKLLANTDPLTNLYNRRFFIEQAEKEYQRAKRYSLSMTLISI 326 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FKSIND +GH GD+VL A+ ++ + ++AR+GGEEF++ +P + + + Sbjct: 327 DIDHFKSINDQFGHPAGDQVLIEIAKQLKASLRQTDILARIGGEEFSILLPETSAMSAMT 386 Query: 241 MAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 AE+I++ T Q + L+VSIGV S AS F+ L AD LY++K Sbjct: 387 FAERIKEEQSRLIITGDWQGEINLSVSIGVSSLIAS----DKAFDVLFSRADKALYQAKN 442 Query: 300 DGRNRTS 306 GRN Sbjct: 443 TGRNTVC 449 >UniRef50_B0TJ24 Periplasmic/7TM domain sensor diguanylate cyclase n=4 Tax=Shewanella RepID=B0TJ24_SHEHH Length = 623 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 141/322 (43%), Gaps = 28/322 (8%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIG--------------G 55 + ++++ L A G + L + ++ +G G Sbjct: 312 MLSCIMLMYMSLAQAFKGNKLAKLFAIGWAGMMLGALLSGAIYLGLLHWDLQAKTPFILG 371 Query: 56 AGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR 115 + AL+ A+RY + L A+ A + ++ + + Sbjct: 372 LSIEVIFMAALL--AIRYNDERLAKLQIQQDALLQAKKAEETKEEALHIEARSSEKLAKM 429 Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQT 172 + T+ + ++ +N +++ + D LT V +R+ + + S +Q Sbjct: 430 VQERTLEL-----EIALRELNEANQKLTEQTRIDSLTGVKNRASFDRRILAEGRISRRQQ 484 Query: 173 QHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVP 231 L++++LDID FK IND+YGH GD+ L V A +++I+ LV+R GGEEFA+ +P Sbjct: 485 APLSILMLDIDRFKLINDSYGHLAGDQALRVIADQLKQILKRPTDLVSRFGGEEFAIILP 544 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + + + +AE IRK + P W + LTVSIGV S +T + L+ +AD Sbjct: 545 NTDKIGAQQVAETIRKVISKLPICWGGNRIRLTVSIGVSS---EIITSEEHTTLLLEQAD 601 Query: 292 TCLYRSKKDGRNRTSTMRYGEE 313 LY++K DGRN+ ++ Sbjct: 602 KALYQAKNDGRNQVKLYSPDQD 623 >UniRef50_A9WIR5 Diguanylate cyclase n=3 Tax=Chloroflexus RepID=A9WIR5_CHLAA Length = 589 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 112/249 (44%), Gaps = 9/249 (3%) Query: 65 ALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC 124 AL AV+ P++ L + ++V + +I + A L + Sbjct: 340 ALPEPAVQLLPEIEGELADGSLLAAPLIVGDRIIGALLVWSNHHDAYTMADLNALELLAA 399 Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLD 181 + V+ A Q+ +A D LT + +R + L + + +++ ++D Sbjct: 400 TVAVALHNAFR---FAQIQSQAITDNLTGLANRRHFLQVLHQEMERNRRYHTPVSIAMID 456 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 +D+FK IND +GH GD VL AR ++ + D ++AR GGEEF + +P L Sbjct: 457 VDHFKQINDTFGHIAGDYVLREIARRCRQQLRDVDVLARYGGEEFGLILPETTYEQALKA 516 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 E++R + P + + T+SIGV S + D + L+ +AD LY +K+ G Sbjct: 517 TERLRTVLATTPIMIDGRQINPTISIGVASFHPTVYP---DPSSLIADADRALYLAKQQG 573 Query: 302 RNRTSTMRY 310 RNR ++ Sbjct: 574 RNRVCGVQE 582 >UniRef50_C3JRE9 Diguanylate cyclase n=2 Tax=Rhodococcus erythropolis RepID=C3JRE9_RHOER Length = 489 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 10/302 (3%) Query: 17 VPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQ 76 +P L + R A +P +A V ++ I G +L P+PAL+WCA R + Sbjct: 159 IPSSLAEFRRKLTARTVAALSVPLLATAACVPIALSIEGPIALVLPIPALLWCATRISVP 218 Query: 77 VTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN 136 T ++ V +++ + +DI + + + + + +A+ PI V+ + Sbjct: 219 STAFVSVVWSVWSLMMAGSGRLDIGDQAASTWNEDVITSIAVTLIALGPIAVACATEERR 278 Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYG 193 + +++ L +FD LT V SR ++ + + + +++LD+D+FKSIND +G Sbjct: 279 AAERELFLAVEFDHLTGVLSRGAFLGHAEAELADAARTQSPVGLLMLDLDHFKSINDTHG 338 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD VL+ FA + D L+ R+GGEEFAV +P + + +AE +R Sbjct: 339 HMTGDSVLANFAERAADRLSDGDLIGRLGGEEFAVLLPDCSFTRAIDVAEAVRGAQVEYS 398 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 + TVS+GV + + LM AD LY +K+ GRN R G + Sbjct: 399 AESD---VTSTVSVGVAWVDHATPA----LSTLMSVADEALYDAKRAGRNLVKVHRVGND 451 Query: 314 VV 315 V Sbjct: 452 TV 453 >UniRef50_C0QLY1 Two domain sensory box histidine kinase (PAS/PAC domain/GGDEF domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLY1_DESAH Length = 440 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 8/201 (3%) Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 FS L I+ I + + ++ K++ A D LT +R + Sbjct: 240 FFISFSRSLDISGKFSNAIAIIEDITKRKTMEKELEKLATTDPLTGAKNRRSFLNLFEKE 299 Query: 168 SLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + ++ L ++++DID+FK INDN+GHE GDK+L++ ++ D + AR GGE Sbjct: 300 MKRSKRYNYTLALVMIDIDHFKKINDNFGHETGDKILNLLVAKCHSVLRDSDIFARWGGE 359 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT-LYLTVSIGVGSGRASYLTLTDDF 283 EF + +P + + AE++R + T + TVSIG + Sbjct: 360 EFIILLPETDLLQASSAAERLRGALAQSELRTNDGTNINFTVSIGFTIFGNKNIL----I 415 Query: 284 NKLMVEADTCLYRSKKDGRNR 304 ++++ +AD LY +KK GRNR Sbjct: 416 DEIIKKADKALYLAKKQGRNR 436 >UniRef50_Q8DCJ9 FOG: GGDEF domain n=3 Tax=Vibrio RepID=Q8DCJ9_VIBVU Length = 479 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 5/269 (1%) Query: 42 ALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDIS 101 L+ + + G + + + ++R + + +A + + + Sbjct: 207 ILMTNDFICQLFGMSEQDVLSHHPMDFISLRSRDLFQRYIQKTINEQDSQEIARADLLLM 266 Query: 102 VGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY 161 + IP + + IM ++ L + A D LT ++R Sbjct: 267 LPEKKDIPIEMAFSRLVFEGKPMIIMSITDISERKKLEAMLRNLAATDPLTGAFNRRSFM 326 Query: 162 EALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV 218 E + + L++M+LDID+FK ND+YGH GD VL + + ++ Sbjct: 327 EQAEKSIRTCQRWNCPLSIMILDIDHFKQFNDSYGHAAGDLVLVELVKMADLSTREIDII 386 Query: 219 ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLT 278 R+GGEEFAV +P + + +A+++R VE ++Q+ L +T+SIGV + + S L Sbjct: 387 GRLGGEEFAVVLPGLGEKEAFEVAKRLRSVVENMQVNYEQQPLQMTISIGVATLQPSELN 446 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +LM +AD LY +K GRN + Sbjct: 447 TP--LEQLMKQADEGLYYAKAHGRNCVIS 473 >UniRef50_Q1K485 Diguanylate cyclase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K485_DESAC Length = 370 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 99/184 (53%), Gaps = 5/184 (2%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTVMLLDIDY 184 ++ ++ I ++A A D LT ++R E + + Q L++++ DID+ Sbjct: 184 LNEALDTIKKRNAEIAELAVRDSLTGSFNRGYFNETFPGAIRRAQRYQQSLSLIMCDIDH 243 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVDGLLMAE 243 FK IND+YGH+ GD+V+ A+ + + + +AR GGEEF + +P N L++AE Sbjct: 244 FKLINDHYGHQTGDRVIKSVAQGLAQSLRQGVDWLARYGGEEFVIVLPETNLEGALVVAE 303 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 ++R+ + Q +++ LT S GV + ++ N ++ AD CLY++KK+GRN Sbjct: 304 RMRRSIADQEIACDPQSIRLTASFGVAGCDPEHASML-TGNGMIAAADRCLYQAKKEGRN 362 Query: 304 RTST 307 + Sbjct: 363 CCCS 366 >UniRef50_A4XVW9 Periplasmic/7TM domain sensor diguanylate cyclase n=1 Tax=Pseudomonas mendocina ymp RepID=A4XVW9_PSEMY Length = 638 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 75/319 (23%), Positives = 129/319 (40%), Gaps = 22/319 (6%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASV----VIGGAGSLAFPLPA 65 F + +L+ C + + +L AL V+ + ++ G G L + L Sbjct: 318 FGSFILLGACAVAAFLITLLRWRAGFAAARLFALGWFVLIAASLASILSGTGLLPYSLLT 377 Query: 66 L----IWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM 121 L I + T L + E A + + I+ Q L Sbjct: 378 LHAQQIGGLIEMTVFSIALAARIRHIQEAKRQAQTQL-IAQERHLRAEQARHLELQTQIS 436 Query: 122 AICPIMVSFSVAAINS-------LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ- 173 V A + ++A D LT +++R L E L + + Sbjct: 437 ESLEQRVQERTATLQETLHQLSNANLRLAELNRRDGLTGLFNRQTLSEELTRACARAERG 496 Query: 174 --HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVP 231 + +++LD+D+FK +ND YGH GD L A+ IQ+ + L+AR GGEEF + Sbjct: 497 KQSVAILMLDLDHFKQVNDRYGHLAGDACLRHAAQRIQQRLRSSDLLARFGGEEFVALLD 556 Query: 232 SVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + + L +AE++R + P +QQ ++ L++SIG+ +G + + AD Sbjct: 557 NTSLDGALDLAEQLRDDLARHPCPYQQHSIPLSLSIGLHAGVPHDPSCG---EHWLDLAD 613 Query: 292 TCLYRSKKDGRNRTSTMRY 310 LYR+K GRN+ + Sbjct: 614 RALYRAKAGGRNQVVSYEA 632 >UniRef50_A4C957 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C957_9GAMM Length = 639 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 7/195 (3%) Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSG---LYEALKSPSLKQT 172 L + A I++S V + K++ A+ D LTQ+ +R + + + + Sbjct: 446 LVNSLFAAILILLSVFVYRQVKVSKRLNRLANTDSLTQLANRRYTFHFAKIVFKEAQIEQ 505 Query: 173 QHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPS 232 + L++++ DID+FK INDNYGH GD+VL A Q + + L+ R+GGEEF V + + Sbjct: 506 KPLSIIIFDIDHFKRINDNYGHPFGDEVLMAVADKAQAGLREPDLLGRIGGEEFMVVLKN 565 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 + +AE++R+ + F Q+ + +T S GV DDF L AD Sbjct: 566 TPINQAVEIAERMRELIAQLSFAAAQQQVKVTASFGVAQFN----VDVDDFGSLFQHADE 621 Query: 293 CLYRSKKDGRNRTST 307 LYR+K GRN+ Sbjct: 622 ALYRAKNAGRNQVVC 636 >UniRef50_A1ASG6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASG6_PELPD Length = 505 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 95/179 (53%), Gaps = 11/179 (6%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKS 187 + + +++ ++ D LT +Y+R LY+ L + LT+MLLDID+FK Sbjct: 318 DITERTRMQEELREASERDPLTSLYNRRKLYQLLTVELTRTRRHGHPLTLMLLDIDHFKR 377 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND +GH+ GD VL+ A I I+ ++AR GGEEF +A P + ++AEKIR Sbjct: 378 INDTFGHDSGDLVLTQVAELISAILRSTDILARYGGEEFVIACPETDMDGAAVLAEKIRS 437 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + + F +T+S+G+ + DD N L+ ADT LY +K+ GRNR Sbjct: 438 SIAMFSFPTVG---AVTISVGISLLESK-----DDINALIKRADTALYAAKEMGRNRVV 488 >UniRef50_C1TNC9 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNC9_9BACT Length = 494 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 13/267 (4%) Query: 44 IVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVG 103 ++ + S+++ + L++ R T ++ + E + ++D+ Sbjct: 237 LLWLQYSLILAFLAVTGGTVFFLLFFLRRRFDPYTRMVGALVDYSERKTDLDGLLDVMSE 296 Query: 104 SPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 S I +++ + I S ++ A+ D LT +++R + + Sbjct: 297 ISSGASDEISYICEALKDMI--LVLKDKMENIQSYSDRLEYLANRDSLTGLWNRRKMDQI 354 Query: 164 LKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L S + + +++ L+V+++DID+FK++NDN+GHE GD VLS A ++ V R Sbjct: 355 LLSETERSSRYGSSLSVVMVDIDHFKNVNDNFGHEVGDTVLSSIAALMKNCTRAGDSVGR 414 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF V +P + L AE++R VE F + +T S GV R+ Sbjct: 415 WGGEEFLVVLPETDVKGALEYAERMRSAVEDNVFHDD---IRITSSFGVTQYRSGEP--- 468 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTST 307 N+ + AD LY +K+ GRNR Sbjct: 469 --VNEFVARADEALYDAKEKGRNRVEI 493 >UniRef50_B4U5K2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5K2_HYDS0 Length = 901 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLL 180 + + + + ++K + D LT + +R L + L+ + + + L+V++ Sbjct: 722 LILCILQDITEESMIIKYFEELSIKDDLTGICNRRCLEDKLEEYLTLAKRYNRPLSVIMF 781 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND+YGH+ GDKVL A + + ++AR GGEEF + P D Sbjct: 782 DIDFFKHINDSYGHDIGDKVLKTIANIVLSNIRATDILARYGGEEFVIISPETTLEDAKA 841 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AEK+RK +E F +T S GV S D ++ D LY++K++ Sbjct: 842 LAEKLRKEIENFLFEEG---FSITCSFGVTSLNQE-----DTKETILKRVDEALYKAKRE 893 Query: 301 GRNRTST 307 GRNR Sbjct: 894 GRNRVVA 900 >UniRef50_Q6AJ00 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AJ00_DESPS Length = 571 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 8/186 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLL 180 + + +++ A D LT++ +R + Q L+V++L Sbjct: 388 GVLWMMDDATKRKKAEEKLVRIAATDSLTKLNNRRHFFSLGHEELALHLHNAQPLSVLML 447 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK++ND GH+ GDKVL +F++ + ++ R+GGEEFAV + + Sbjct: 448 DIDHFKNVNDTLGHQAGDKVLKIFSKICAVNLRSVDIIGRIGGEEFAVILTNTPRSQAQR 507 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 AE+IR +E P +Q +TVSIG+ + + ++ + ++ AD LY++K + Sbjct: 508 TAERIRLAIETSPEFTKQSLPKITVSIGIATNQP-----PENLDAIICRADKNLYQAKSN 562 Query: 301 GRNRTS 306 GRNR Sbjct: 563 GRNRIE 568 >UniRef50_Q21PN7 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21PN7_SACD2 Length = 565 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 10/230 (4%) Query: 83 FVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQV 142 + + + + + + + Q SA+L + V + +++ Sbjct: 343 LQSTVSDHIRTIQNALSTFKQAQPAPSQSLSAQLKALMDRVKT--VEEESEKSRAQLEEQ 400 Query: 143 ALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECGDK 199 +A D LT + +R E + LT+ + D+D+FK IND +GH+ GDK Sbjct: 401 RYKATHDPLTSLPNREAYNERAFHELHRFKRYGHPLTLAVCDLDHFKKINDTFGHQAGDK 460 Query: 200 VLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQK 259 VL + A+ + + + VAR GGEEF + +P + + +K+R + PF ++ Sbjct: 461 VLKLVAQVVSTRLRNVDFVARYGGEEFVLVMPETDAEQAKTVLDKMRAAIAKTPFRFKDS 520 Query: 260 TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + +T+S G+ R D AD LY +K +GRN+ Sbjct: 521 PVTITMSFGIVQFRGE-----DSVESAFARADKALYEAKANGRNQCVIAP 565 >UniRef50_B4VK28 GGDEF domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VK28_9CYAN Length = 331 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 110/272 (40%), Gaps = 16/272 (5%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 I + F A + ++T + + + + P Sbjct: 57 IILLDAMMPVMDGFTCCAQLQERFGQKCPPVLMITGLNNQESVDRAFEAGATDYITKPIH 116 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAA-------INSLMKQVALRADFDFLTQVYSRSGL 160 + + + + + + +++ D D LTQ+ +R Sbjct: 117 WAVLRQRVRRLLHTHWVMAELHRKIEQERVLKAKLEEMNQELQRLVDLDGLTQIANRRAF 176 Query: 161 YEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKG 216 +AL+ + + L+++L DID+FK+ ND YGH+ GD+ L A ++K Sbjct: 177 DQALQQEWKRLAREQAPLSLILCDIDFFKAYNDTYGHQAGDECLKQVADILRKAAKRPAD 236 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSGRA 274 +VAR GGEEF V +P+ + + +AE IR ++ + + + +T+S GV Sbjct: 237 VVARYGGEEFVVILPNTSLRGAMQVAESIRSKLKSRAIVHEGSGVSKFVTLSCGVA---G 293 Query: 275 SYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 ++L+ EAD LY++K +GR+R Sbjct: 294 VIPPPKTTPDRLIAEADQALYKAKVEGRDRVV 325 >UniRef50_Q0BZW4 Response regulator PleD n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZW4_HYPNA Length = 455 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 16/252 (6%) Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 L A L+ + + + P ++ A Sbjct: 212 LKLIAHFKMNPVTRSISVILICDPHDKAKALRGLEIGASDMITIPIDRQEL-------AA 264 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTV 177 + + + + + + D LT +++R + E + + Q L++ Sbjct: 265 RIRTQTRRTRYIDILRQRVDRGLELSVIDQLTGLHNRRYMNGQLEQFMQRAARGNQPLSL 324 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 M+ DID+FK++ND +GH+ GD VL + ++ V +V R GGEEF V +P+ Sbjct: 325 MMTDIDHFKAVNDTHGHQAGDDVLREIGKRLRANVRPTDVVCRTGGEEFVVLMPNTPGDL 384 Query: 238 GLLMAEKIRKGVELQPFTWQQKT--LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 AE+IRK V + F + L +TVS GV + + + D + LM ADT LY Sbjct: 385 ACAAAERIRKAVAAEEFPVLGGSQNLRITVSAGVSTLQGA----GDTTDDLMHRADTALY 440 Query: 296 RSKKDGRNRTST 307 ++K GRNR + Sbjct: 441 QAKTGGRNRVES 452 >UniRef50_C6BU46 Diguanylate cyclase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BU46_DESAD Length = 490 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 6/175 (3%) Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGH 194 + ++ RA+ D LT+VY+R E L + + L+++++D+DYFK++ND YGH Sbjct: 311 MFNKIKTRANRDGLTRVYNRRSFDERLVEEFKRHQRLNTELSLLMVDLDYFKAVNDTYGH 370 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 GD VL AR +K +AR GGEEF + +P ++AE+IR +E Sbjct: 371 MAGDMVLEKVARMFEKTFRSTDFIARYGGEEFVILLPHTREDQAEMLAERIRAKIESCAM 430 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 T+Q K+ +T SIGV S R L +++ +AD LY +K GRNR Sbjct: 431 TYQDKSFNITASIGVSSVRPGSLEKDT---EIVRKADEALYDAKMQGRNRVVVSP 482 >UniRef50_Q2IX34 Diguanylate cyclase n=5 Tax=Rhodopseudomonas palustris RepID=Q2IX34_RHOP2 Length = 350 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 94/188 (50%), Gaps = 7/188 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLL 180 +++ V I +++ A D +T +++R + + + L+ +++ Sbjct: 143 GRMLIYSDVTDIVRNAEELERLATTDGMTGIFNRRHFLTLADREWARARRYGRPLSCLMI 202 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FKSIND++GH+ GD ++ A+ + D ++AR+GGEEFA+ +P + L Sbjct: 203 DIDHFKSINDDFGHQVGDDMIVHLAKLARDCKRDCDVLARIGGEEFALLLPETDLPQALA 262 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE++R V ++ TVSIG + A+ D + LM AD LY +K Sbjct: 263 VAERLRGEVAASSLLMASGSVRATVSIGAATSAATI----DGISDLMRAADRALYEAKHG 318 Query: 301 GRNRTSTM 308 GRNR Sbjct: 319 GRNRVVCH 326 >UniRef50_Q5P7Y3 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P7Y3_AZOSE Length = 313 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 9/211 (4%) Query: 103 GSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE 162 GS F I ++ G + I + + L ++ A D LT + +R E Sbjct: 106 GSEFPIELTVASWFGEDRR-LSFIGIIRDITERKRLEAELRQLATTDPLTGILNRRRFTE 164 Query: 163 ALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 + + LT+++LDID+FK IND +GH GD+V+ A + + ++ Sbjct: 165 LTTQEIHRAHRLRHPLTLIMLDIDWFKRINDAFGHTVGDRVIQSLASACASELREIDILG 224 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL-YLTVSIGVGSGRASYLT 278 R+GGEEFAV +P + L +AE++R+ VE T + T S+GV + Sbjct: 225 RLGGEEFAVVLPELGASGSLEVAERLRQKVEGLQITLNDGRIVRFTCSLGVAVLK----D 280 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + L+V AD LYR+K+DGRN Sbjct: 281 TDQSPDTLLVRADNALYRAKRDGRNCVRAAS 311 >UniRef50_Q0A5N6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A5N6_ALHEH Length = 419 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 11/210 (5%) Query: 103 GSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE 162 G+ F + Q + + + + + +++ A D LT + +R + Sbjct: 217 GALFYLEQSITPVRADQGQVVRYVATGKDITERVRMEEELKRAATTDALTGLANRLSFEQ 276 Query: 163 ALKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 L+ + L++++ D+D+FK++ND +GHE GD VL A + V VA Sbjct: 277 LLERDYERCRRYGGALSLLMFDLDHFKAVNDAHGHEAGDAVLQALAGLVLANVRTADTVA 336 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R GGEEF V +P +AEK+R+ V F +T S GV + R Sbjct: 337 RWGGEEFMVLLPETPLAAAGELAEKLRERVAAHRFPHGA---PVTASFGVCALR-----D 388 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 D L+ AD LYR+K GR+R + Sbjct: 389 DDTCRTLVRRADEALYRAKHLGRDRVECLS 418 >UniRef50_B4UA43 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4UA43_HYDS0 Length = 610 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 11/187 (5%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLD 181 + + L + + ++ D LT +Y+R L + L+ + + + L+V++ D Sbjct: 432 AVFTFVDITKEKELSELLLKQSIEDTLTGIYNRRYLKDKLERHVNLAKRYERPLSVIMFD 491 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK IND +GH+ GDKVL ++ + + + + + AR GGEEF + P D ++ Sbjct: 492 IDFFKHINDTFGHDVGDKVLIAISKVVSENIRNTDIFARYGGEEFIIVAPETTKEDAKIL 551 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AEK+R + F + +T S GV S D L+ D LY +K+ G Sbjct: 552 AEKLRSLIRNLHFEEG---INVTCSFGVVSL-----EKPDTKETLLKRVDNALYEAKRTG 603 Query: 302 RNRTSTM 308 RNR + Sbjct: 604 RNRVVVL 610 >UniRef50_Q31EI0 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31EI0_THICR Length = 620 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 10/184 (5%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDID 183 ++ + Q+ D LT VY+R L+ + + ++ +DID Sbjct: 438 VLMTDITEEEHYKSQLEHLIIHDELTGVYNRHYFNRTLEQEIKRHQRYQSPFSMAFMDID 497 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK IND YGH+ GD VL A++I ++ + R+GGEEF + +P + + L+++E Sbjct: 498 HFKMINDTYGHDVGDAVLVSLAKNISSLLRSTDVFCRVGGEEFVIMMPETSLENALIISE 557 Query: 244 KIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +IR VE + + +T+S+G+ + D+ AD LY++K++GRN Sbjct: 558 RIRSTVEG--ISSKDVPEKITISMGLVELNSW-----DNVQSFYKRADEALYKAKENGRN 610 Query: 304 RTST 307 R T Sbjct: 611 RIET 614 >UniRef50_Q21NS3 Diguanylate cyclase n=5 Tax=Alteromonadales RepID=Q21NS3_SACD2 Length = 319 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 7/197 (3%) Query: 117 GIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQ 173 I + V+ + I + Q+ + D LT + +R E + Sbjct: 127 HICLIVYDVTEVAVNRLQIQAANLQLHEISRTDGLTGLLNRKTWELDAEQEYKRFKRHEH 186 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSV 233 ++++ DID+FK+IND+YGH GD+V+ A ++ + D + R GGEEF + + Sbjct: 187 PCSLVMFDIDHFKNINDSYGHPAGDEVIRQTAAAVKSCIRDIDIAGRYGGEEFTIVLSDT 246 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 + L++AE+IR ++ ++ + TVS+GV T + AD Sbjct: 247 DTEGALVVAERIRNQIQELTVHYEDFAIQFTVSLGVAQLTQQMTNRT----AWIDCADKA 302 Query: 294 LYRSKKDGRNRTSTMRY 310 LY++KK+GRN + Sbjct: 303 LYQAKKNGRNNSVVYTP 319 >UniRef50_Q3JE99 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Nitrosococcus oceani RepID=Q3JE99_NITOC Length = 661 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 14/275 (5%) Query: 46 SVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP 105 + G+ + + +LT + E + + + D + P Sbjct: 366 CQLVIYEHRLPGANSMKFCRSLREMKCGRQIYLIVLTGMVSGGEAIRIFEAGADDHIAKP 425 Query: 106 FSIPQMFSARLGIATMAICPIM-------VSFSVAAINSLMKQVALRADFDFLTQVYSRS 158 F+ + + G + V +A + +++ A D LT + +R Sbjct: 426 FNYEVLQARVGGGERLIRLREEAEQEREAVRGYLADLAVANRRLGQMAMTDSLTGLPNRR 485 Query: 159 GLYEALKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK 215 E ++ + + +++D+D+FK +ND YGHE GD VL A + Sbjct: 486 YAMERMEQAWAEYERNQTPFSCLVMDLDFFKRVNDQYGHEIGDSVLLEIANVFRGSARSS 545 Query: 216 GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRAS 275 ++ R+GGEEF V P + +AE++R+ VE +T T L+VSIG+ + Sbjct: 546 DIICRLGGEEFLVVCPHTVATEAFQVAERLRRAVEEHSWTMLDSTSVLSVSIGLAASSEG 605 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 D L AD LY++K++GRNR Sbjct: 606 MQHWND----LYRLADQALYQAKRNGRNRVCMAPS 636 >UniRef50_A5D1G5 Hypothetical signaling protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1G5_PELTS Length = 343 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 70/317 (22%), Positives = 132/317 (41%), Gaps = 24/317 (7%) Query: 14 VLIVPCMLTLAIPGVLPRFKAEQMMPAIAL-----IVSVIASVVIGGAGSLAFPLPALIW 68 VL + L G + +P L V++ + I G + + A + Sbjct: 20 VLAMVPSLVAVAVGYRFAVQGFARLPVEILWGHYETVNITRASAISGFVAAVLVIAASLP 79 Query: 69 CAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFS--------------- 113 AV ++T L ++ + + + I ++ S I + Sbjct: 80 LAVIIARKLTHPLELLSEGADRIARGDYGITFNLRSNLEIEALAENFNKMSLKLKEEREN 139 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLK 170 +A + +S + + ++ L + D LT Y+R + L+ + + Sbjct: 140 LFRQVALLEEQKREISVQKEELARVNSRLELLSITDPLTGAYNRRYIISQLEQELAVAAR 199 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 L+++++DID+FK +ND +GH+ GD+VL + + + ++ R GGEEF V Sbjct: 200 HGLPLSLIMIDIDHFKKVNDTHGHQVGDEVLKDVVKVLSGCIRTADVLGRYGGEEFVVIA 259 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD-FNKLMVE 289 P + L++AE++R V PF L LT+S+GV + + ++L+ Sbjct: 260 PFTGFQEALVLAERLRDTVSRWPFETTYGFLKLTISLGVTTFNGKEEHYHNSLIDRLLAR 319 Query: 290 ADTCLYRSKKDGRNRTS 306 AD +Y++K GRN S Sbjct: 320 ADEEMYKAKAQGRNLVS 336 >UniRef50_C0QQU4 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Persephonella marina EX-H1 RepID=C0QQU4_PERMH Length = 359 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 26/312 (8%) Query: 9 QFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAG------SLAFP 62 +F V ++ L + AE + I +I+ + ++ GG +P Sbjct: 51 EFIVATGAVLNLILLKVSDGKLIRVAENFI-LIGMIILLTGIIIHGGIANTAIYWIYTYP 109 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMA 122 L + R +T + V + ++ I SP I Q SA + I +A Sbjct: 110 LLSFFLKGNRVGLFWN--ITLIVVIVILAVLNKLNIVPIPYSPDEIRQALSAYVVIMVLA 167 Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVML 179 +A+ S +++ A D LT ++R L++ L+ + + HL++++ Sbjct: 168 YVFE------SALLSSYEKIKKLATTDPLTGAFNRYQLFKKLEEEIERSKRYGNHLSLIM 221 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 DID FKSIND YGH GD+VL + I+ + + R GGEEF + P +N Sbjct: 222 FDIDNFKSINDTYGHNIGDQVLKITIDTIKNHIRKTDTLGRFGGEEFMIICPGINDEGAR 281 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AEKIRK V+ + +T+S+GV + + +AD LY +KK Sbjct: 282 NIAEKIRKLVKDIKVEGIPE---ITISVGVAEYFP-----DESITDFIKKADIALYSAKK 333 Query: 300 DGRNRTSTMRYG 311 G+NR Sbjct: 334 KGKNRVEIYSSE 345 >UniRef50_UPI0001AEC0DE GGDEF domain protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC0DE Length = 329 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 7/177 (3%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDN 191 + L +++ + D LT +Y+R E ++ + T ++LDID+FK IND Sbjct: 151 MEHLNEELKTASRVDGLTGLYNRRYWQERFDEMHKLCVRREKPSTALMLDIDHFKRINDT 210 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GDKV+ + A I++ V + L R GGEEFA+ + + D ++AE+IR+ + Sbjct: 211 YGHQAGDKVIKMLAALIKRCVRETDLAGRYGGEEFAIILNDSSVEDAKIVAERIRQLAQR 270 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 + +++ TVS+G+ + + AD LY +K++GRN+ Sbjct: 271 LVVEHEGESISFTVSLGLAQFSPDFKGAM----AWLECADQALYEAKENGRNQYRIY 323 >UniRef50_C4XKN6 Putative signaling protein n=2 Tax=Desulfovibrio magneticus RS-1 RepID=C4XKN6_DESMR Length = 629 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 57/203 (28%), Positives = 94/203 (46%), Gaps = 6/203 (2%) Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPS 168 FS ++ + + + +++ A D LT + +R E L + Sbjct: 419 FSVFKDETGISTGIFAAARDITERKIMEERLKEMATTDSLTGLNNRQHFLEHSSILFEMA 478 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + +L++ L DID+FK +ND +GHE GD VL ++ ++ R+GGEEFAV Sbjct: 479 KRHKANLSIALFDIDHFKQVNDTWGHEAGDLVLRELSKLALNCFRSSDIIGRIGGEEFAV 538 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 +P + + +L +E+ RK VE F ++ L +TVSIG+ + T N L Sbjct: 539 IMPETDKEEAILASERFRKIVESTRFEYENDLLSITVSIGIAQFNPNTNT---TINDLTK 595 Query: 289 EADTCLYRSKKDGRNRTSTMRYG 311 +D LY +K +GRN Sbjct: 596 ISDDALYTAKANGRNMVFCANDQ 618 >UniRef50_B9Z0Y0 Diguanylate cyclase n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z0Y0_9NEIS Length = 528 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 19/288 (6%) Query: 30 PRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVE 89 AE ++ L+++++A V+I G L L + ++ L VT + Sbjct: 248 RTAAAESRRLSLQLVIAIVAGVLI--YGWLTLWLGSNTVRHALRASELAILPGAVTTMLA 305 Query: 90 IVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFD 149 V F++ F G + V + ++A A D Sbjct: 306 TTWTFYWV--------FALIAAFVGFFGYRMFTYWLDSSTRLVNELAEANSKLAHLARTD 357 Query: 150 FLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFAR 206 LT + +R L EAL+ + ++ +++LLDID+FK +ND YGH+ GD V+ + Sbjct: 358 TLTGLPNRRALEEALEQQLQRSRRNGEQASLVLLDIDHFKVVNDRYGHDAGDAVIRALGK 417 Query: 207 HIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVS 266 + + + + + R GGEEF V + +V+ AE++R VE + + T+S Sbjct: 418 AMSETIRNVDVAGRWGGEEFLVVLANVDEEGAAAFAERLRTRVESSTVAHGELHVRYTIS 477 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 +GV + + AD LYR+K DGRNRT+ + E Sbjct: 478 LGVAPLSTPHR------EAWLKRADEALYRAKLDGRNRTAIAQARGEA 519 >UniRef50_Q2BML0 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BML0_9GAMM Length = 577 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 76/306 (24%), Positives = 131/306 (42%), Gaps = 22/306 (7%) Query: 17 VPCMLTLAIPGVLPRFKAEQMMPAIALIVSVI------------ASVVIG-GAGSLAFPL 63 + + L +P PR + L+ I + IG +L + Sbjct: 270 LFARVFLELPSRFPRLNLSFNLLGGVLLFCGILFLLLDDVLSLLYTAFIGIVPFALLMII 329 Query: 64 PALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAI 123 C L V + V+ A +V I + L A + Sbjct: 330 AGACACLNGVKEARYFLGAAVFAMISAVITAFTVSGIVEYKAIGFHAVEYGMLIEAVLFA 389 Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLL 180 + F + + Q AD D LT +Y+R G + ++ + + + L +++L Sbjct: 390 LALAYQFRINQEEKVAAQ--QLADRDQLTGLYNRRGFDKVMEPVFGNAYRHHRELCLLVL 447 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK+IND +GH GD VL+ A+ +Q + L+AR GGEEF + +P N ++ + Sbjct: 448 DIDHFKAINDRHGHGYGDLVLTDLAKVLQHELRAGDLIARWGGEEFLLLLPETNHMEAVT 507 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE++ + + + + TVSIG+ + + F +L+VEAD LYR+K+ Sbjct: 508 LAERLIRNISNREVEGDGVQEHYTVSIGIAELKPPIV----SFKQLLVEADKHLYRAKET 563 Query: 301 GRNRTS 306 GRN+ Sbjct: 564 GRNKAC 569 >UniRef50_A7BV03 Sensor protein n=2 Tax=Beggiatoa sp. PS RepID=A7BV03_9GAMM Length = 866 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 29/263 (11%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + + + F + + +Y +LT +T + + + D V PF Sbjct: 619 VILLDVMMPDMTGFEVCQQLRKTPQYELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFD 678 Query: 108 IPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP 167 I ++ + AI A D LT+VY+R+ L Sbjct: 679 ISELLARIRVGERTAIK------------------KREATIDGLTKVYNRNYFDMYLAQE 720 Query: 168 ---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGE 224 + + + L++++ DID FK+IND YGH GD VL F + I + LVAR GGE Sbjct: 721 VSRAKRYKRELSLIITDIDLFKNINDTYGHLTGDTVLQEFTQIIMQQCRRSDLVARFGGE 780 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFN 284 EF + +P G ++AE++ + ++ F Q+ ++T S GV S D Sbjct: 781 EFIILLPETPLKGGTIVAERMCQRIDAHIF---QEVEHITASFGVASL-----ITDRDGR 832 Query: 285 KLMVEADTCLYRSKKDGRNRTST 307 +L+ AD+ LY++KK+GRN+ Sbjct: 833 ELLRRADSALYQAKKNGRNQVVV 855 >UniRef50_Q74AN9 Response regulator n=1 Tax=Geobacter sulfurreducens RepID=Q74AN9_GEOSL Length = 301 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 16/237 (6%) Query: 75 PQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAA 134 LLT G +++ ++ D VG PFS+ ++ AR+ + + + Sbjct: 75 LPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGEL-RARIQVGRRTV------ELHSR 127 Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDN 191 + + + +A D LT V +R + + L+ + + L++ +LDID+FK +ND Sbjct: 128 LQETQEALNHQATHDPLTGVMNRRAIIDHLEKELSRVKRDGGSLSIGILDIDHFKRVNDR 187 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GD+VL + ++ D L+ R+GGEEF V P D + E++R + Sbjct: 188 YGHQTGDEVLCGCVGVLGGLLRDYDLLGRLGGEEFLVVAPGTG-DDCNHLYERLRAAIAS 246 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 FT + K + +TVSIGV + T ++L+ AD LYR+K+ GR+R Sbjct: 247 TKFTSRAKPVSVTVSIGVAACDG-----TAGLDELLAAADDALYRAKRSGRDRVVQA 298 >UniRef50_B8DJ36 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DJ36_DESVM Length = 698 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 88/184 (47%), Gaps = 7/184 (3%) Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFK 186 V ++ A D LT V +R L+ + + + L+V+LLD D+FK Sbjct: 495 LDVTDQVEDTLRLEQLATTDELTGVANRRHFMARLEDEAARAQRYGRPLSVLLLDADHFK 554 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 SIND +GHE GD VL + + + L+ R+GGEEF V +P L AE+IR Sbjct: 555 SINDTWGHEAGDMVLRHITDVMGLSLRENDLIGRLGGEEFGVLLPETAQERALRTAERIR 614 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 VE P + + TVS+G R + D + L+ AD L R+K++GRNR Sbjct: 615 AAVEDAPVAVRDVWVGCTVSVGAAEYRGA----NDSLDDLIRRADHMLMRAKEEGRNRVC 670 Query: 307 TMRY 310 + Sbjct: 671 AQQA 674 >UniRef50_Q6ALC0 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALC0_DESPS Length = 652 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 8/187 (4%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH----LTVML 179 + + +++ A D LT + +RS L+E ++ +Q L++++ Sbjct: 468 GVVWTIDDITTKRQSREKLQRLATTDSLTGLCNRSQLFEIAEAELERQRHSSEHNLSLVM 527 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LDIDYFK IND +GH GD VL FA +K + D + AR+GGEEF + +P + L Sbjct: 528 LDIDYFKKINDAHGHAAGDLVLKAFADIGRKYLRDVDVFARIGGEEFIILLPGTDIKVAL 587 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +AE+ R VE P +K + TVS GV + + F +++ EAD+ LY +K+ Sbjct: 588 KIAERFRALVEKNPVMVNEKEIAFTVSFGVTAWNG----IEQTFEEVLHEADSALYVAKE 643 Query: 300 DGRNRTS 306 GRNR Sbjct: 644 KGRNRVE 650 >UniRef50_C1A5L7 Putative two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5L7_GEMAT Length = 491 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 8/199 (4%) Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---S 168 + T A+ I + V + + ++ A D LTQ+ +R L E + + + Sbjct: 294 LEFAQAVITAAVAVIQRAQMVESTMADNARLEQLAQTDPLTQLLNRRALTERITAEMERA 353 Query: 169 LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 L+ L ++++D+D+FK +ND YGH GD VL + + + + AR GGEEF V Sbjct: 354 LRYDSTLALLMIDLDHFKKVNDTYGHLVGDDVLRDVGQLLGHTIRGSDITARYGGEEFLV 413 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQ--KTLYLTVSIGVGSGRASYLTLTDDFNKL 286 +P + + AE+IR +E PF + L LT SIGV A+ + ++ L Sbjct: 414 LLPETDDAGAVAFAERIRVAMEEHPFARDSMAEPLKLTASIGVAVFPAARI---ENVEDL 470 Query: 287 MVEADTCLYRSKKDGRNRT 305 AD LYR+K +GRNR Sbjct: 471 FARADAALYRAKAEGRNRV 489 >UniRef50_Q21VE2 Diguanylate cyclase n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21VE2_RHOFD Length = 398 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 70/300 (23%), Positives = 125/300 (41%), Gaps = 15/300 (5%) Query: 16 IVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTP 75 +L + L + ++ IA ++V+ +V AG L P V Sbjct: 108 TAAILLFWVLMTGLIFDRRGIVIGTIAASMAVLGLIVAENAGWLR---PPFYDVGVTQWV 164 Query: 76 QVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAI 135 T L F +G + + ++ + ++ + V + Sbjct: 165 TFTALFGFTSGLTYYINQGTKSA-----LALARKEIEQRKQAEQSLKAANEELHLRVFEV 219 Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNY 192 L ++ +A D LT +Y+R L +AL + + LT ++ DID+FK +ND+Y Sbjct: 220 QRLQVELHEQAIHDPLTGLYNRRYLSDALAREIIQAKRANSSLTFVMADIDHFKFVNDSY 279 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH GD+VL A ++K + R GGEEF + P + AE+I++ Sbjct: 280 GHLAGDEVLVQVASLLKKHARGSDIACRYGGEEFLLVFPGTSLELAHKRAEEIQQNCAAL 339 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 + K + + +S GV + + +++V+AD LY+SK +GRN+ + R E Sbjct: 340 SIQHEGKNIAVMLSFGVAAY----PDHGQQWEQIIVKADKALYQSKCNGRNQVTIFRDEE 395 >UniRef50_B2V6Y8 Diguanylate cyclase n=1 Tax=Sulfurihydrogenibium sp. YO3AOP1 RepID=B2V6Y8_SULSY Length = 492 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 12/233 (5%) Query: 78 TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINS 137 T L+TF+ + +I + F + S + I+++ I+++ + I Sbjct: 266 TILMTFMLIKSFNNISIGYLISYEADTTFKVFSK-SFYIMISSLLFIMIIINIFIINIIK 324 Query: 138 LMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGH 194 L +A D LT +++RS + ++ + + ++++L DID+FK IND YGH Sbjct: 325 LKNVAEKKAITDKLTGLFNRSIIDTLIQVEIERAKRNNKPISILLFDIDHFKKINDTYGH 384 Query: 195 ECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPF 254 + GD L A ++ + V R GGEEF +P + +AEKIR +E F Sbjct: 385 DKGDYALKTIAEIARRTLRKSDYVLRWGGEEFLAILPETDLDGATKVAEKIRSNIENYNF 444 Query: 255 TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +TVSIGV + + + AD LY +K GRNR Sbjct: 445 KDIG---RVTVSIGVTMLKIGEP-----LDNAIKRADEALYAAKNKGRNRVEV 489 >UniRef50_B6BK11 Ggdef/pas/pac-domain containing protein n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BK11_9PROT Length = 464 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 8/202 (3%) Query: 110 QMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL 169 + F + + I I + A +L +Q+ +A D+LT++++R L+ Sbjct: 266 EFFGSPIKITEDTTNIIWNILDITAKKNLQEQLETQATTDYLTELHNRRYFTSRLEEEVA 325 Query: 170 KQTQ----HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 + + ++++ D+D FK IND GH GD VL +FA ++K + + R+GGEE Sbjct: 326 RIKRDKKVTSSLLMFDLDKFKLINDTLGHLMGDVVLKIFADILKKNLRKSDIAGRIGGEE 385 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 FA+ +PS N + ++A +IR+ V + ++ TVSIG+ + + + + Sbjct: 386 FAMILPSTNIREAKVLANRIREEVSNKKTIIDGNSINFTVSIGLTAI----ASDDANSDS 441 Query: 286 LMVEADTCLYRSKKDGRNRTST 307 ADT LY +K GRNR Sbjct: 442 AFARADTALYMAKGKGRNRVEV 463 >UniRef50_B0C2A6 Diguanylate cyclase (GGDEF domain), putative n=3 Tax=Acaryochloris marina MBIC11017 RepID=B0C2A6_ACAM1 Length = 420 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 9/201 (4%) Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQH 174 I + + ++ KQ++L A+ D LT + +R E L+ + ++ Q Sbjct: 223 IQAKLYAQQALEATNKKLDEANKQLSLIANHDALTGLANRRRFDEYLQQIWKQTQREQQP 282 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSV 233 L++++ DID+FK ND YGH GD L A+ I + + LVAR GGEEFA+ +P+ Sbjct: 283 LSLLICDIDFFKQYNDTYGHLEGDICLRTVAQKIHQTIVRPLDLVARFGGEEFAIVLPNT 342 Query: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSGRASYLTLTDDFNKLMVEAD 291 + G ++AE++R ++ + ++ +TVSIG + R+ T + L+ AD Sbjct: 343 DLEGGQVVAERLRMIIQKSQLPHRGSSVSEFVTVSIGAATVRSHPHT---SVSSLISRAD 399 Query: 292 TCLYRSKKDGRNRTSTMRYGE 312 LY++K+ GR++ + E Sbjct: 400 QALYQAKQSGRDQVVALSITE 420 >UniRef50_C6P3N4 Diguanylate cyclase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3N4_9PROT Length = 387 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 137/315 (43%), Gaps = 20/315 (6%) Query: 11 STGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGA--GSLAFPLPALIW 68 S+ VLI+ + PR++ + LI +++ + G G + F L ++ Sbjct: 77 SSYVLILAAVYEFQQRSA-PRWQYFVPVILTLLIAAILIDDIHGRFIWGGIVFVLQLVLI 135 Query: 69 CAVRYTPQVT------CLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMA 122 + + T LL V +VL S++ +S + P+ + ++ Sbjct: 136 ASELLRNRATHTGRAWRLLLAGIAIVVVVLGLRSLVAMSGQFILAQPETGGVPNWVQVLS 195 Query: 123 ICPIM-------VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS-PSLKQTQH 174 +M + F + ++V A D LT V +R L + + + + + Sbjct: 196 FVAVMASSLLGSIGFLLMVKERTDREVLHLAMTDSLTGVPNRRALMDYAERAMAQRGGRS 255 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 + ++++D D+FK IND YGH GD+VL R +Q+ + L+ R GGEEF V P + Sbjct: 256 VALLMIDADHFKRINDTYGHPVGDEVLRQLTRLLQQRLRGGDLLGRYGGEEFCVVAPDAD 315 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 L +AE +R+ V +Q L +TVSIG+ A ++ EAD L Sbjct: 316 AEGALKLAESLRESVASAVLDTEQGKLSITVSIGIAHSTAD---AGRALKDILAEADIAL 372 Query: 295 YRSKKDGRNRTSTMR 309 Y +KK GRN+ + Sbjct: 373 YSAKKGGRNQVVSFS 387 >UniRef50_A7N081 Putative uncharacterized protein n=6 Tax=Vibrio RepID=A7N081_VIBHB Length = 354 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 7/189 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLL 180 I V + L K++ ++ D LT V +R L L+ +Q L+ +++ Sbjct: 150 WVIWSVRDVTKTHLLEKRLKELSETDELTGVLNRRAFLTRLDKAMSSHLRPSQTLSCIMI 209 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DID+FK IND GH GD+V+ A+ Q+ + + R+GGEEFAV + + + + Sbjct: 210 DIDHFKEINDQVGHFSGDQVIHHVAKICQRAIRGSDFIGRLGGEEFAVILVNTSAIQAYD 269 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +AE+IR+ ++ P + TVSIGV + T+ LMV AD +Y SK Sbjct: 270 VAERIREAIQNAPCKVDGIEISTTVSIGVAEYDEQVSSTTE----LMVNADKAMYYSKHS 325 Query: 301 GRNRTSTMR 309 GRN+ + Sbjct: 326 GRNQVTLHH 334 >UniRef50_Q30SY9 Diguanylate cyclase (GGDEF domain) n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SY9_SULDN Length = 611 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 11/170 (6%) Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECG 197 ++ A D LT Y+R + E +K ++ +++L++++ DID+FK +ND YGH+ G Sbjct: 449 ELERLASIDKLTGAYNRRMIDEFMKKEIFLHVRDSKNLSLIMADIDHFKLVNDTYGHQAG 508 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VLS R I + + R GGEEF V P+ + L++A+KIR+ +E F Sbjct: 509 DAVLSDVGRIISSTIRKSDIFGRYGGEEFIVICPNTSSQQALILAQKIREEIENFHFAEV 568 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 T+S+GV + A+ D+ ++ AD LY +KK+GRNR Sbjct: 569 GHK---TISLGVATLIAN-----DEVENIIKRADDALYIAKKEGRNRVVL 610 >UniRef50_Q31GI5 Diguanylate cyclase (GGDEF domain) n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31GI5_THICR Length = 532 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 12/210 (5%) Query: 104 SPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 + + + + I ++V F + + + A D LT + +RS A Sbjct: 330 KLITENFLQHLLINEFLLLIISLLVFFFIRNQIRQRRLLHKMAKTDNLTGLPNRSIFKRA 389 Query: 164 LKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L + + L+++ DID+FK IND YGH GDKVL AR+I+ + K + AR Sbjct: 390 LNENIKRSNKKQWPLSLIFFDIDHFKKINDTYGHLVGDKVLKKVARNIEDGLTHKDIFAR 449 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF + +P+ + D +AE++R+ +E + +T S GV R Sbjct: 450 WGGEEFVILLPNTDLQDAEKVAERLRQKLEAMT----DFDITITSSFGVSDLRP-----D 500 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 D M D LYRSK+ GRNR + Sbjct: 501 DTAESFMQRGDEMLYRSKEQGRNRVTANSP 530 >UniRef50_B7VQN9 GGDEF family protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VQN9_VIBSL Length = 405 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 137/334 (41%), Gaps = 29/334 (8%) Query: 2 LADWFSEQFSTGVL---IVPCMLTLAIPGVLPRFKAEQMMPAIALIV--SVIASVVIGGA 56 ++ W S+ S + + +L P + + + +++ + ++ Sbjct: 61 ISPWLSKITSNMAIAGGFASMVFSLTQLRQSPSLYSVCVFLGLPVVIVTLIYFTLYDAST 120 Query: 57 GSLAFPLPALIWCAVRYTPQVT------------CLLTFVTGAVEIVLVANSVIDI---S 101 + + I + V LL V A I ++ I + + Sbjct: 121 NARVITMSFYITLCTVASVLVIKTGTVADVKAALVLLMSVFSAHSIFMLVRIWITLKEPN 180 Query: 102 VGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY 161 + + I + + I +++ LM+ + + D LTQ+Y+R + Sbjct: 181 IDDFLQASSIHQLAFIITAILLSTIGFTYNWLLNARLMQSLYSSSMKDSLTQLYNRRAMN 240 Query: 162 EALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV 218 E L+ ++ L+V++LDID+FK +ND +GH+ GD+VL +Q + + Sbjct: 241 EMLRREWMRSVRHNHPLSVIILDIDHFKQVNDQHGHQTGDQVLKKIGIILQHNLRAADIP 300 Query: 219 ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLT 278 R GGEEF + +P + +AEK+R +E F W+Q++ LT S G+ A Sbjct: 301 FRYGGEEFLIVLPDTRIGEACKVAEKLRIIIEETKF-WRQQSANLTASFGLSELWAE--- 356 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 D ++ AD LY +K++GRN + + Sbjct: 357 --DKVPSMIKRADEALYYAKENGRNTVCALTDEQ 388 >UniRef50_C8X007 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X007_DESRD Length = 531 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 77/318 (24%), Positives = 135/318 (42%), Gaps = 19/318 (5%) Query: 4 DWFSEQF-STGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSV--IASVVIGGAGSLA 60 +W F +GV++ +L + V+P + + + + +V +V + Sbjct: 211 NWTPMSFALSGVILALGILCFRVLDVVPIARKQVIDAMSEGVAAVDNSGRIVDANPAACQ 270 Query: 61 FP---LPALIWCAVR--YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR 115 F + LI R + P L+ G+ + + ++ AR Sbjct: 271 FLQSDVAGLIGMRARDVFAPWYATLVVMEPGSGSVEIRLPYGFKEMSWLEIERSEIRDAR 330 Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQT 172 +++ V+ ++ A D LT +Y+R +E + + + + Sbjct: 331 ----GRLWGQLVLMRDVSERKEAESRLLQMAATDELTGLYNRRRFFELARGEFNRAKRYS 386 Query: 173 QHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPS 232 +T++LLDIDYFK IND YGH+ GD L I + ++AR+GGEEF +P Sbjct: 387 SPMTILLLDIDYFKRINDEYGHDAGDTALRCIVSMIASQLRSLDVLARLGGEEFVALLPE 446 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 + D +AE+IR +E + TL++TVSIGV + + L+ AD Sbjct: 447 THQFDAERIAERIRSEIESTAINLFETTLFVTVSIGVAGYSKEMQDVGE----LINRADE 502 Query: 293 CLYRSKKDGRNRTSTMRY 310 +YR+K+DGRN+ Sbjct: 503 AMYRAKRDGRNQVCLATP 520 >UniRef50_Q47C76 PAS:GGDEF n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C76_DECAR Length = 548 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 8/191 (4%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDY 184 +S + I K++ + FD LT +++R + K + +++ L+VM+LDID+ Sbjct: 362 ISTDITPIKHYQKELERLSQFDELTNLFNRRHFFSLAKHELNRSSRYRSKLSVMMLDIDH 421 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK IND +GH+ GD VL+ + I + D + RMGGEEFA+ +P + +MAE+ Sbjct: 422 FKRINDGHGHKTGDLVLANIGKQIGDSLRDSDIAGRMGGEEFAILLPETDLEQASIMAER 481 Query: 245 IRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 +RK V +TL T+SIG+ + + D L+ +ADT LY +K GRN Sbjct: 482 LRKQVAETWLDIGDGRTLNCTLSIGLATKSDQQI----DLENLLHQADTALYAAKNSGRN 537 Query: 304 RTSTMRYGEEV 314 + S Sbjct: 538 KVSCADRNRPA 548 >UniRef50_A9L0C9 Diguanylate cyclase n=2 Tax=Shewanella baltica RepID=A9L0C9_SHEB9 Length = 466 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 136/307 (44%), Gaps = 15/307 (4%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPAL-IW 68 + G +++P + +LA+ L +P + S ++ L + L AL + Sbjct: 152 WLWGFVLIPVLCSLAL--ALFATWGSHWLPILIAKNSYK-QLLHSPYALLVWGLNALALV 208 Query: 69 CAVRYTPQVTCLLTFVTGAVEIVL---VANSVIDISVGSPFSIPQMFSARLGIATMAICP 125 C +R L T+++ A+ L + ++ S+ + + Sbjct: 209 CMIRRARSNNVLYTWLSVALLASLIDVTLTLFAGARFSLGWYAARISSSVSSMVLLCALL 268 Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDI 182 V+ A + + ++ D LT +++R L L + + + L +++LD+ Sbjct: 269 WEVNRLYVATQRANESLYQQSVKDTLTGLFNRRYLESQLAIHIDHAKRHKEPLCLLVLDV 328 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 D+FK+ ND +GH GD L A+ +++ + +AR GGEEF V +P + DG+ + Sbjct: 329 DHFKAFNDQHGHLAGDDCLVTVAKQLEQSLYRPADFIARYGGEEFIVVLPHTDAKDGMQI 388 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++R V + +Q + L +T+SIG R + L++ AD+ LY++K G Sbjct: 389 AERLRLNVSAEKIEYQGQLLSVTISIGCAVLR----HSEETAQSLLIAADSALYQAKAAG 444 Query: 302 RNRTSTM 308 RN Sbjct: 445 RNCVKVA 451 >UniRef50_B8KJJ5 GGDEF domain protein n=2 Tax=unclassified Gammaproteobacteria RepID=B8KJJ5_9GAMM Length = 540 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 68/267 (25%), Positives = 115/267 (43%), Gaps = 23/267 (8%) Query: 56 AGSLAFPLPALIWCAVRYTPQVTCLLTF---VTGAVEIVLVANSVIDISVGSPFSIPQMF 112 L +P +W T + L + E +V +V +G F+ + F Sbjct: 269 VLILLLSVPVFLWTLSSVTSPLKNLAAIFRRLAAGSEESVVDAAVTKDEIGDLFNAAEAF 328 Query: 113 SARLGIATMAICPIM---------VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA 163 + V+ + + +++ A D LT ++R L +A Sbjct: 329 RRENIRERELLADYRELSRTLEAKVTQRTRELEAKNEELDHLASVDKLTDTFNRRALDKA 388 Query: 164 LKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVAR 220 L + + + + L+++L+DID FK +ND YGH GDKVL ++ I++ + ++ R Sbjct: 389 LLAELERADRYQRPLSILLMDIDLFKQVNDEYGHLTGDKVLVTLSQTIRENLRASDILGR 448 Query: 221 MGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLT 280 GGEEF V P + +AEK+R+ +E F + +T+SIG+ Sbjct: 449 WGGEEFLVICPETDLEQARNVAEKVRQAIEGTDFELGK---TITISIGLSVL-----IEG 500 Query: 281 DDFNKLMVEADTCLYRSKKDGRNRTST 307 L+ EAD LY++K GRNR T Sbjct: 501 TSAESLVAEADKALYQAKSQGRNRVCT 527 >UniRef50_Q5NP17 Diguanylate cyclase with beta propeller sensor n=3 Tax=Zymomonas mobilis RepID=Q5NP17_ZYMMO Length = 1008 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 63/260 (24%), Positives = 114/260 (43%), Gaps = 17/260 (6%) Query: 60 AFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIA 119 A +P +I+ + L + G + +L + +++ + + + Sbjct: 754 AGSVPFVIYSHLPAGHFTFALRATIPGIKQPILETHFPVNVEYRWYEYRFVKIALIIILV 813 Query: 120 TMAI---------CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK 170 +M++ + ++ A+ D LT + +R E + + Sbjct: 814 LFLYDLISNQIRKLRLMITNKTLELQETNLRLKELANTDELTGLLNRRAFTEMFEKNCAQ 873 Query: 171 QTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFA 227 ++ +V +LDID+FK INDN GH GD V+ A+ I + + + AR GGEEF Sbjct: 874 FSKTKDQFSVFILDIDFFKKINDNEGHLAGDAVIQYIAQKITENIRQQDFAARYGGEEFV 933 Query: 228 VAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLM 287 + +P+ + +A +I + +P +Q + + +TVSIGV + DD N L+ Sbjct: 934 IMLPNADMETTCQVASRIGNAISEKPVPYQGREIPVTVSIGVAVMK-----ENDDANSLL 988 Query: 288 VEADTCLYRSKKDGRNRTST 307 AD LY +K GRNR S+ Sbjct: 989 ERADERLYMAKNQGRNRVSS 1008 >UniRef50_A0LD73 Diguanylate cyclase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD73_MAGSM Length = 513 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 116/243 (47%), Gaps = 18/243 (7%) Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV 132 + C+ +G V V+ D++V P+ IP + + S SV Sbjct: 270 HPLGFYCMPVLHSGTVGNVVQLVVEPDMAVMFPYIIPFL-----------QVFLRESSSV 318 Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSIN 189 LM+++ A D LT + +R L E + + S ++ L+V+++D+D+FK +N Sbjct: 319 IESKRLMEKLRESALKDPLTGLNNRRFLEEYERTIVASSQRKEMFLSVLMMDLDHFKMVN 378 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D +GH+ GD VL A + + LV R GGEEF V + + P G +AEKIR+ V Sbjct: 379 DTHGHQVGDAVLKSLAGVLMQQTRASDLVVRYGGEEFMVVLQNERPHMGNQIAEKIRETV 438 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 E L T+SIGV T DF+ ++ +AD LYR+K+ GRNR + Sbjct: 439 ERLKINVPGGCLQKTISIGVAEF----PTDGTDFDDVVEKADMALYRAKEQGRNRVISHS 494 Query: 310 YGE 312 E Sbjct: 495 ASE 497 >UniRef50_A5V1I0 Diguanylate cyclase with GAF sensor n=2 Tax=Roseiflexus RepID=A5V1I0_ROSS1 Length = 681 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 6/182 (3%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYG 193 L + A D LT V++R +E ++ + + L ++++D+D+FKS+ND YG Sbjct: 500 HLFAEARRHATIDELTGVWNRRTFFENVRREFQRSQRTLHPLAILMIDVDHFKSVNDTYG 559 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL A + + ++ R GGEEFAVA+P + +AE++R VE P Sbjct: 560 HAAGDQVLRGVAERCRNQLRVIDIIGRYGGEEFAVALPETDIHAAGQIAERLRIAVERAP 619 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 F ++ LT+S+G + ++ AD LY +K+ GRN Y Sbjct: 620 FVTDYGSISLTISVGAAVYHPDDHV---TLDAVIDRADRALYIAKRSGRNSVRVWSYPAT 676 Query: 314 VV 315 V Sbjct: 677 TV 678 >UniRef50_A4SM80 GGDEF domain protein n=2 Tax=Aeromonas RepID=A4SM80_AERS4 Length = 432 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 95/191 (49%), Gaps = 9/191 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDID 183 + ++ L++++ + A D LT + +R E +K + ++++LLDID Sbjct: 246 AILRDISERARLVEELKVAATTDPLTGIANRRRFDELVKQEVQRCQRFGHTMSLLLLDID 305 Query: 184 YFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAE 243 +FK +ND +GH+ GD+ + R I K + + ++ R GGEEF + +P + AE Sbjct: 306 HFKQVNDTHGHQQGDQAILSLVRRIAKQLREVDILGRWGGEEFIILLPETSLDLAWASAE 365 Query: 244 KIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 +IR + + + LTVSIG+ + + D+ + ++ ADT LY +KK GR Sbjct: 366 RIRLAIASESHPLGADIEIPLTVSIGISASQG----PQDNVDNMVRRADTALYLAKKQGR 421 Query: 303 NRTSTMRYGEE 313 N E+ Sbjct: 422 NC-CIKEATEQ 431 >UniRef50_Q2BQS0 GGDEF family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQS0_9GAMM Length = 314 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 7/188 (3%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVM 178 I ++ ++ L +++ A+ D +T Y+R E++ + ++ Sbjct: 129 IAAVIWLAINITEKKRLEQRLKDLAEKDPMTGAYNRRFFRESIDQHYATFKRYGTTYSLA 188 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +DIDYFK +ND +GH+ GD V+ HIQ+ + L++R GGEEF V P +N + Sbjct: 189 FIDIDYFKKVNDQFGHDVGDGVICHLVTHIQEQLRTTDLLSRFGGEEFVVLFPHINLDEA 248 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 L+AE++R +E+ P+ + TVSIG+ RA + ++ AD+ LY+SK Sbjct: 249 CLVAERLRATIEMTPYKSINHKVPFTVSIGISEVRAE----DESVEDILKRADSALYQSK 304 Query: 299 KDGRNRTS 306 GRN+ + Sbjct: 305 SSGRNKVT 312 >UniRef50_A1TWT4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TWT4_MARAV Length = 407 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 8/197 (4%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVM 178 + + ++ L ++ A D LT V +R L + + + L ++ Sbjct: 210 TMVLEGIILDISDRKQLENELEALATRDSLTGVLNRRECSRVLIEELERARRYNRPLALL 269 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +D D+FK IND +GH GD VL + ++ V + R GGEEF + +P ++ + Sbjct: 270 WIDFDHFKEINDTWGHAAGDSVLCSISSLLEDSVRSVDTLGRFGGEEFVLILPEMDVAEA 329 Query: 239 LLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 AE++R+ V QP + + LT+SIGV D + L AD +YR+ Sbjct: 330 EETAERLRQRVCNQPVALESGHNIRLTISIGVAVF----PDHGDTLDALCAAADKAMYRA 385 Query: 298 KKDGRNRTSTMRYGEEV 314 KK GRN + + + V Sbjct: 386 KKQGRNCIAMAQAVQPV 402 >UniRef50_B0SEM7 GGDEF domain protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SEM7_LEPBA Length = 288 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 20/284 (7%) Query: 38 MPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVR-------YTPQVTCLLTFVTGAVEI 90 MPA ++ + G + F L L A+ Y L T + A+ Sbjct: 1 MPATFDLIWLTVLAFGTGHITSFFILGYLGSIALSSMSLDRNYGIYNAFLATVLFSAMGF 60 Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATM----AICPIMVSFSVAAINSLMKQVALRA 146 ++ + +++ P P + S + + I +VS +++ + +++ A Sbjct: 61 LVYFEILPSVNILMPTVKPTLMSIFISSILLGGSAFIVNQIVSKLFSSLTDVNQKLLAIA 120 Query: 147 DFDFLTQVYSRSGLYEALKSPSLKQTQ-----HLTVMLLDIDYFKSINDNYGHECGDKVL 201 D LT + +R + L+ ++ + + +L D+D FKSIND YGHE GD+VL Sbjct: 121 MTDPLTGISNRRSFFSNLEIELARKQRSVGPYPIAFLLFDLDLFKSINDTYGHEFGDQVL 180 Query: 202 SVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL 261 FA ++ + + AR GGEEF V +P+ + +++AEKIR F + K + Sbjct: 181 IEFATVLKTSLRKQDFPARWGGEEFLVLLPNTDLDGAIVVAEKIRTSFHSLSFYAKDKRI 240 Query: 262 YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRT 305 + S+G+ + ++ +AD LY +K++GRN+ Sbjct: 241 QCSTSVGISVCN----EQGINPEVVINQADQYLYEAKRNGRNQI 280 >UniRef50_Q2BP61 GGDEF/HAMP domain protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP61_9GAMM Length = 580 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 124/306 (40%), Gaps = 23/306 (7%) Query: 22 TLAIPGVLPRFKAEQMMPAIALI--VSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTC 79 TL L + P +L+ I+ V+I +AF L + ++ Sbjct: 273 TLHSAEYLVIRSTFNLTPIYSLMHKFLGISLVIILVVLGIAFFLLSFLFEKWILRRIFRI 332 Query: 80 LLTFVTGAV-------------EIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPI 126 + A E+ L+A+ + ++ ++ AR + Sbjct: 333 IAALERSAEGDYADQMISDRKDELGLIADHINSMNRRIAHRDVELREARNTLEHRVEERT 392 Query: 127 M-VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDI 182 + V A +++ A D LT+V +R + + + + L ++LLDI Sbjct: 393 RDLQLEVNARKKAEEELIKLASTDPLTRVLNRRAFDQRSREEIERSHRYNRELAIILLDI 452 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND YGH+ GDKVL A I + + R GGEEF + +P + LL+A Sbjct: 453 DHFKQINDQYGHQFGDKVLIDVANLIGPSLRAADCLCRHGGEEFIILLPETDEATALLIA 512 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E++RK + T + +L +T S GV R D + AD +Y++K GR Sbjct: 513 ERVRKSIAQHKITDRHDSLSITASFGVAVWR----REEGDIQPAVYRADQAMYKAKNSGR 568 Query: 303 NRTSTM 308 N+ Sbjct: 569 NKVVAF 574 >UniRef50_C0QC96 Sensory box histidine kinase (GGDEF domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QC96_DESAH Length = 1268 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 15/210 (7%) Query: 106 FSIPQMFSARLGIATMAICPIMVSFSVAAINS----LMKQVALRADFDFLTQVYSRSGLY 161 F+ M+ A + + + ++A N ++ + D LT +Y+R + Sbjct: 1066 FNYKNMWRYLFITALLFSGILFWNRKLSAFNRQMAEANAKLEQLSVTDRLTGLYNRMKID 1125 Query: 162 EALKSPS---LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV 218 + L L+ L+++L+DID FK +ND +GH+ GD VL A+ + K + + Sbjct: 1126 DTLLEEIGRVLRYNYPLSLILMDIDLFKQVNDTHGHQAGDAVLIQMAKTMDKNIRSTDIC 1185 Query: 219 ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLT 278 R GGEEF V P + L +AE +R+ + Q F + T S GV Sbjct: 1186 GRWGGEEFMVICPHTDLKGALSLAEHLRESIARQIFPH---VITQTGSFGVAQY-----G 1237 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 D L+ AD +Y +K+ GRNR ++ Sbjct: 1238 NGDSEADLIARADRAMYLAKEGGRNRVESV 1267 >UniRef50_Q31IP8 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IP8_THICR Length = 540 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 100/186 (53%), Gaps = 6/186 (3%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVMLLDIDYFKSI 188 + + SL+ Q+ A D+LT + +R +E + + + Q ++++++DID+FK I Sbjct: 358 MEQLGSLLNQLRDEATKDYLTGLLNRKAFFEQAEQIWLSAKEHHQPISLLMIDIDHFKRI 417 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND++GH+ GD+VL A + ++ LV R GGEEF + + + + L A +++K Sbjct: 418 NDSFGHDAGDRVLIEVANVFSQNCREEDLVCRYGGEEFIILLENKDEQPTLEFASRLKKV 477 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 ++ + Q + + ++S+GV +G A L + + AD LY++K +GRNR Sbjct: 478 IQEMSVSEQGEVIRFSISVGVATGSALEL---NSIETFISHADQALYQAKANGRNRVEVF 534 Query: 309 RYGEEV 314 E+ Sbjct: 535 HAEEKT 540 >UniRef50_Q2BLA2 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BLA2_9GAMM Length = 811 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 57/186 (30%), Positives = 101/186 (54%), Gaps = 5/186 (2%) Query: 132 VAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSI 188 + + A D LT + +R L++ + + + L++ +LD+D+FK I Sbjct: 627 LIEEQQTEANLHRLATTDELTSLANRRKFLTTLEAELARAKRYHRELSLCMLDLDHFKRI 686 Query: 189 NDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKG 248 ND+ GH GD VL A+ ++ ++ + + R+GGEEFA+ +P + D L++AE++R+ Sbjct: 687 NDDNGHSAGDSVLVEVAKIMEAMLRESDMAGRIGGEEFAILLPDTSEDDALILAERLREA 746 Query: 249 VELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 +E +Q TL LT SIGV S + +L+ AD C+Y +K++GRN S + Sbjct: 747 IESLEIKYQAHTLKLTTSIGVASLNQMPEIVQAS--ELLSAADDCMYYAKQNGRNLVSNV 804 Query: 309 RYGEEV 314 R +++ Sbjct: 805 RTTQQL 810 >UniRef50_A6LYL1 Diguanylate cyclase n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYL1_CLOB8 Length = 568 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 76/314 (24%), Positives = 133/314 (42%), Gaps = 22/314 (7%) Query: 11 STGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCA 70 ST VL + L I +P + + L++S+ S +I + +I Sbjct: 260 STWVLFIYSYLD--IKKHMPILNNFFKLSILFLVLSLYISKIIPDGFTYDILYLQMILVG 317 Query: 71 VRYTPQVTCLLTFVTGAV----EIVLVANSVIDISVGSPFSIPQMFSAR-----LGIATM 121 + + F G++ I ++ I +GS + A Sbjct: 318 LYILISIYSYFKFGMGSIYYLVGIFILFTGFIIYILGSYGLLEWNIFAFSTCYPAASIET 377 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS---PSLKQTQHLTVM 178 + I + + + ++ L D LT +Y+R E + + K+ ++++ Sbjct: 378 LLFTIGIIKQIKHEKEVNTKLQLEVITDKLTNIYNRRYFEETVVNKILQLEKEKSLVSML 437 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 +LDID+FK +ND YGH GD VLS A I++ + + ++ R GGEEF +P + + Sbjct: 438 VLDIDHFKKVNDTYGHSTGDLVLSETAMIIKQCLRKEDILVRWGGEEFVAVLPFTDSKES 497 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 ++AE IR +E F + K +TVSIG+ + +DF+ AD LY +K Sbjct: 498 TIIAETIRLSIENHKFKFVNK---ITVSIGIAE-----KDVVEDFHSWFRRADNALYNAK 549 Query: 299 KDGRNRTSTMRYGE 312 ++GRN E Sbjct: 550 ENGRNTVCICYTNE 563 >UniRef50_Q30SV7 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SV7_SULDN Length = 659 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 11/186 (5%) Query: 126 IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDI 182 I ++ ++ + ++ K + A+ D LT +Y+R E +K S + +L+++++DI Sbjct: 482 ISIARDISELKAMNKTLEKMANTDNLTGIYNRRKFEEIIKIEMERSARYNSNLSLIMIDI 541 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND YGH+ GD V+ + K + + R GGEEF V P + ++A Sbjct: 542 DHFKRINDTYGHDEGDNVIRKTVEIVSKNIRHLDVFVRWGGEEFIVLCPQTESKNASILA 601 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 EK+R +E + K +T S GV S +D + + DT LY +K +GR Sbjct: 602 EKLRVAIESVNYETLGK---ITCSFGVTSY-----IKDEDKSSFIKRLDTALYSAKDEGR 653 Query: 303 NRTSTM 308 NR + Sbjct: 654 NRVVAL 659 >UniRef50_B0C0K6 Diguanylate cyclase (GGDEF) domain protein n=3 Tax=Acaryochloris marina MBIC11017 RepID=B0C0K6_ACAM1 Length = 449 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 8/189 (4%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDY 184 + + + + A D LT+VY+R L + + ++++++DID+ Sbjct: 248 FNLMANQLEQSQQDLYRLATLDGLTEVYNRREFNRWLLVEIERSQRGEHPVSLIMVDIDH 307 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK +ND YGH+ GD L A+ +Q+ V +V R GGEEF V +P D ++AE+ Sbjct: 308 FKRLNDTYGHQAGDLALCEVAQLLQREVRPGDIVCRYGGEEFGVILPKATSADSWVIAER 367 Query: 245 IRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRN 303 IR + + Q+ + +T S+GV + D +L+ +AD LY +K GRN Sbjct: 368 IRLAIAEKSVVLPSQQHIDMTASLGVATY----PDHADCKERLVKQADQALYTAKYQGRN 423 Query: 304 RTSTMRYGE 312 R + E Sbjct: 424 RVHSAEVNE 432 >UniRef50_B7K319 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Cyanothece RepID=B7K319_CYAP8 Length = 660 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 10/207 (4%) Query: 109 PQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP- 167 + S +A I S + + +++A A+ D LTQV +R E L Sbjct: 452 EEEMSLLESVAAQLGIAIAHSHLLEQLKEANEKLAALANLDGLTQVANRRHFDEILAQRW 511 Query: 168 --SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGE 224 ++ Q L++++ D+DYFK ND YGH+ GD+ L A+ I K V LVAR GGE Sbjct: 512 KQCAREKQPLSLIMCDVDYFKRYNDFYGHQMGDECLIKVAQTIAKTVQRPGDLVARWGGE 571 Query: 225 EFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL--YLTVSIGVGSGRASYLTLTDD 282 EFAV +P+ + +A+ IR+ V+ + + +++S+G+ + TL ++ Sbjct: 572 EFAVILPNTDVNGVKYIAQSIREQVQSLAIIHEDSPIKNQVSISLGIATIIPPAKTLENN 631 Query: 283 FNKLMV----EADTCLYRSKKDGRNRT 305 L+ +AD LY++K+ GR+R Sbjct: 632 HESLIKALIAQADQALYQAKEQGRDRI 658 >UniRef50_A8I8X7 GGDEF domain protein n=2 Tax=cellular organisms RepID=A8I8X7_AZOC5 Length = 510 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 106/257 (41%), Gaps = 11/257 (4%) Query: 58 SLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLG 117 P + + + + + V IV+V + ++ + + Sbjct: 248 MTTTPQGSFTSTSEIDRVKRYYVFSRVGDLPLIVVVGVGMDAVTAPWQAQWLAGAATSVV 307 Query: 118 IATMAICP-IMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQ 173 + + + + + + + ++ + D LT + +R E + +Q Sbjct: 308 LCLLILGAAVALRREMLRRFEIEQEFLRLSQTDSLTGLPNRRHFDEFGQREWQRAARQRS 367 Query: 174 HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPS 232 + V+++DID+FK +ND GH GD+VL + I+ + R GGEEFA+ +P Sbjct: 368 SIAVLMVDIDHFKQVNDRIGHPGGDRVLREVSDIIRASLHRPGDFAGRYGGEEFAIILPE 427 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 + +AE+IR +E + +TVSIG+ A ++M+ AD Sbjct: 428 TDAPAAAHVAERIRAAIEA---NTAEGVAPVTVSIGLA---AGLAAPKGTLAEMMIAADH 481 Query: 293 CLYRSKKDGRNRTSTMR 309 LYR+K+ GRNR + Sbjct: 482 ALYRAKETGRNRVVSSH 498 >UniRef50_A8HRM0 Putative diguanylate cyclase n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8HRM0_AZOC5 Length = 514 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 105/229 (45%), Gaps = 11/229 (4%) Query: 89 EIVLVANSVIDISVGSPFSIPQMFSARLGIATMAIC-PIMVSFSVAAINSLMKQVALRAD 147 +V S+ DI + + + +A L + +I +++ + + L ++ + Sbjct: 272 LVVATGQSIRDIFLPWRYRVLVGTAAVLTVGFASIAIALVLRHDLMRRSRLQAELLQLSL 331 Query: 148 FDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT + +R ++ + + + V+++DID FK +ND GH GD VL Sbjct: 332 TDDLTGIANRRRFFDVAIREWQRAQRLGSPVAVLMIDIDRFKLLNDRLGHAAGDAVLQAI 391 Query: 205 ARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 A+ I+ + L AR GGEEF +P + AE+IR VE + Sbjct: 392 AQLIRHSLRRPADLAARYGGEEFTAILPDTDMAGAFQTAERIRTQVERDVIRGDH---PV 448 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 TVSIG+ A+ + + F ++ AD LYR+K+ GRNR R G+ Sbjct: 449 TVSIGIA---AAIASPNETFENVVAAADRALYRAKESGRNRVMVERIGD 494 >UniRef50_Q21JG3 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21JG3_SACD2 Length = 603 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 132/312 (42%), Gaps = 23/312 (7%) Query: 6 FSEQFSTGVL-IVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIAS---VVIGGAGSLAF 61 F+ QFST +L I L +PA+ + + V+ F Sbjct: 279 FALQFSTDILNIKEFSKLLNRIAKCLMIACVVAIPAVLTMPYAFMAPVMTVLTLTIMPLF 338 Query: 62 PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATM 121 + ++ A Y P +L + +++ V + + F+ I M Sbjct: 339 FVMGVLRLASGYRPARYFMLAWTALIFSVIVYVLKVFGVLPRTFFTENGFQIG--SIIEM 396 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEAL---KSPSLKQTQHLTVM 178 + + + + ++ ++ D LT++ +R + + + Q L ++ Sbjct: 397 VLLSLALGSRMT-------ELKQQSHTDALTEIGNRRRFDDVFPVEFERAQRNKQPLALL 449 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 ++DIDYFK +ND +GH+ GD+ L A I+ + L R GGEEFAV +P + Sbjct: 450 MIDIDYFKKLNDTFGHDAGDQALRAVATTIKTLTRKPMLPCRFGGEEFAVILPRTDSAAA 509 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 ++AE+IR+ + +P ++ +TVS+GV S Y T +M AD CLY +K Sbjct: 510 KIVAERIRQTIAEKPMAKRE----VTVSVGVASTDMGYFT---SSRAIMNAADECLYLAK 562 Query: 299 KDGRNRTSTMRY 310 + GRNR Sbjct: 563 EMGRNRVCLFSE 574 >UniRef50_A1TTA7 Diguanylate cyclase n=2 Tax=Acidovorax RepID=A1TTA7_ACIAC Length = 357 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 125/311 (40%), Gaps = 16/311 (5%) Query: 8 EQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAI---ALIVSVIASVVIGGAGSLAFPLP 64 T + +V + A +L R + + I + S I + +IG + L Sbjct: 52 SPLLTWLNLVSIGMYAAAYALLQRHRNGAALALIWLEVVGHSAIGTWLIGWNSGFHYYLL 111 Query: 65 ALIWCAV----RYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 I V R L V + + + P + + + Sbjct: 112 MFIPAIVVGRGRRAATPVMLFALFVFYVGMYEFSRRHGAQAPLDPLGQSIAHAFNVAV-V 170 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ---TQHLTV 177 A+ + ++ +++ +A D LT + +R L + + Q +V Sbjct: 171 FAMAAYTARYYYGSVLRAERRLEEQACTDPLTGLSNRRRLAGLAQERIAQARAAGQPTSV 230 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++ DID+FK IND +GHE GD+VL A +++ L+AR GGEEF + +PS D Sbjct: 231 VIADIDHFKRINDTHGHEAGDQVLVHVAELMERSSRAHDLLARWGGEEFLLVMPSCGLGD 290 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 +AE++R V P + + ++S+GV R + + AD LY S Sbjct: 291 AQALAERMRAIVAGHPARRDTQAIPASLSLGVAQLRG-----GESLEAAIARADQALYAS 345 Query: 298 KKDGRNRTSTM 308 K+ GRNR +T Sbjct: 346 KEAGRNRVTTA 356 >UniRef50_A0Z7X2 Response regulator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7X2_9GAMM Length = 365 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 11/183 (6%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDY 184 V + +++ A D LT++ +R L E L+ + +++ L+++LLDID+ Sbjct: 187 VEERTLELKRANEKLEYLASTDPLTELVNRRRLDEVLEQEFERTSRYQGELSLILLDIDH 246 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK++ND GH+ GD+V++ +++ R GGEEF + P + + + AEK Sbjct: 247 FKAVNDTRGHQVGDEVIAGVGNIAKQMSRKSDTAGRWGGEEFLIVAPQTSCDNAVAFAEK 306 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 +R +E F+ + ++ S GV S + ++ AD LYR+K +GRNR Sbjct: 307 LRLSIENTEFSSG---VRVSASFGVASL-----ETGETIQLVLKRADEALYRAKHNGRNR 358 Query: 305 TST 307 T Sbjct: 359 VET 361 >UniRef50_A8UV88 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UV88_9AQUI Length = 475 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 8/171 (4%) Query: 146 ADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLS 202 A D LT + +R E + S + + L+++++DID FKSINDNYGH+ GD VL Sbjct: 307 AYTDPLTGLNNRRFFMENARTIIDLSKRYREPLSLLMMDIDNFKSINDNYGHDVGDLVLK 366 Query: 203 VFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY 262 A I+K V + AR GGEEF V +P + L++AE+IR K ++ Sbjct: 367 KLAEVIRKNVRTSDIPARFGGEEFVVLLPRTDEKGALMVAERIRNEFRNSSVKVDGKDIW 426 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 +VSIG+ + DD + L+ +AD LY++K+ G++R R ++ Sbjct: 427 TSVSIGLSVL-----SEEDDIDSLIKKADEALYQAKRSGKDRVVIYREEDQ 472 >UniRef50_B3QU32 Diguanylate cyclase and serine/threonine protein kinase with TPR repeats n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QU32_CHLT3 Length = 606 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 15/197 (7%) Query: 121 MAICPIMVSFSVAAINSLMKQVALRADF-------DFLTQVYSRSGLYEALK---SPSLK 170 + + + + + A L++++ +A+ D LT + +R E + + + Sbjct: 415 LEVTTLALKEANAENQLLLERLREQAETLERLVTYDGLTGLANRRHFDEQFEYEFRRTRR 474 Query: 171 QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + L++ + DID+FK +NDN+ H+ GD+VL A ++ V LVAR GGEEF Sbjct: 475 YKRPLSIAMSDIDFFKKVNDNFSHQVGDEVLKKVASIFRENVRAGDLVARYGGEEFVFIF 534 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 N + AEKIRK +E ++ L +T+SIGV D ++L+ A Sbjct: 535 TETNKESAIRAAEKIRKAIEDYDWSNVHAGLKVTISIGVAEDAGF-----DGCDELIAAA 589 Query: 291 DTCLYRSKKDGRNRTST 307 D+ LY +K++GRN+ Sbjct: 590 DSKLYEAKRNGRNQVRA 606 >UniRef50_B2A6L1 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6L1_NATTJ Length = 340 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 19/282 (6%) Query: 48 IASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFS 107 + + I + I + + ++T + + + + + P Sbjct: 59 LILLDIMMPDIDGIEVCKRINDSSHVSDIPVIIVTALNDSGFLERAFQAGAIDFITKPVK 118 Query: 108 IPQMFSARLGIA-------TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGL 160 ++ + + + ++ + K+ A D LTQ+ +R Sbjct: 119 RLELLARVGSAIKLSKEKRMRIVREQELEKTLKLLEETNKKFEKLATIDELTQLANRRLF 178 Query: 161 YEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQ-KIVGDKG 216 E ++ + ++ L+++LLDIDYFK+ ND YGH+ GD+ L A+ ++ ++ Sbjct: 179 DETMRGEWRRANRNGYNLSIILLDIDYFKNFNDAYGHQAGDECLKAIAKKLKFLMMRPGD 238 Query: 217 LVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSGR- 273 AR GGEEFAV +P + +AEKIR+G+E + +TVS+GV S Sbjct: 239 FAARYGGEEFAVILPETDLRGAHSVAEKIRQGIEELKIPHCDSKVAQYVTVSLGVASADL 298 Query: 274 -----ASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 D+ L+ AD LY++K +GRN + M+ Sbjct: 299 KNCQGGRDQATDDEIKILIEHADEALYKAKDNGRNTIALMQP 340 >UniRef50_A1VA66 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=Desulfovibrio vulgaris RepID=A1VA66_DESVV Length = 827 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 7/206 (3%) Query: 107 SIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EA 163 + AR + + + +L + A D LT V +R + Sbjct: 609 PVNVEVHARRIEFEGRFVVLSSARDITERKNLEAALLREATTDPLTGVRNRRQFFVDANR 668 Query: 164 LKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 + +L+ L V++LDID+FK++ND YGH+ GD+VL FA + + + R+GG Sbjct: 669 EFARALRHDSGLAVLMLDIDHFKNVNDLYGHQAGDEVLRAFAACCVEALRAYDVFGRLGG 728 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDF 283 EEFA +P+ +P + + AE++RK VE + ++ L TVS+GV S A+ L F Sbjct: 729 EEFAALLPAASPEEAMETAERLRKRVERRSVVYEGTALQCTVSVGVTSLAAADLG----F 784 Query: 284 NKLMVEADTCLYRSKKDGRNRTSTMR 309 + ++ AD LY +K GRNR+ Sbjct: 785 DDMLRRADRALYAAKDHGRNRSEMAP 810 >UniRef50_C8QVV3 Diguanylate cyclase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QVV3_9DELT Length = 519 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 13/213 (6%) Query: 100 ISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN---SLMKQVALRADFDFLTQVYS 156 ++ + F RL +A I+ + L+++ A D LT + + Sbjct: 302 LAEIGQIGAEEDFGRRLPVAAGHEIGIIARHFNKLLEVVERLLREKDQLAGTDQLTGLNN 361 Query: 157 RSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVG 213 R E L ++ + L++++ DID+FK +ND YGHE GD VL A+ +Q V Sbjct: 362 RRRFKELLDQELIRYRRIPKPLSLLIFDIDHFKRVNDTYGHETGDLVLKEMAQLLQATVR 421 Query: 214 DKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGR 273 AR GGEEF V +P+ + +AEK+R+ +E F +T S GV + Sbjct: 422 RTDTPARWGGEEFLVLLPATTAEAAMALAEKLRQAIEEHDFPRVG---RVTASFGVAAFH 478 Query: 274 ASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + L+ D LY++K+ GRNR Sbjct: 479 DGEQEES----ALLRRVDKALYQAKRQGRNRVV 507 >UniRef50_Q0A9X2 Diguanylate cyclase n=3 Tax=Proteobacteria RepID=Q0A9X2_ALHEH Length = 295 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 64/191 (33%), Positives = 104/191 (54%), Gaps = 8/191 (4%) Query: 127 MVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ----HLTVMLLDI 182 + V A +L +++ A D LT VYSR + E + ++ + LT++++D+ Sbjct: 105 ALEKEVQARETLAEELHRLAMMDDLTGVYSRRQVLEVGERELARRRRQGLTPLTLLMMDL 164 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND YGH GD VL F+ +++ + + V R+GGEEF +P V+ GL +A Sbjct: 165 DHFKRINDKYGHAAGDTVLVAFSEVLRRNLRESDAVGRLGGEEFLAVLPDVDLQGGLALA 224 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E+IR + WQ++ + LTVSIGV L + + + ++ AD LY++K GR Sbjct: 225 ERIRSEIAELRIPWQEEAIRLTVSIGVA----GILAVHESLDDTIMRADDALYQAKVAGR 280 Query: 303 NRTSTMRYGEE 313 NR + G + Sbjct: 281 NRVTVAGSGAQ 291 >UniRef50_Q1JWQ3 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWQ3_DESAC Length = 648 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 9/189 (4%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVM 178 + + + + L +++ A D LT +R L+ + + + + L+V+ Sbjct: 463 LVGMVGTVLDITTMVLLQQKLERLATTDELTGAVNRRQLFIYTDQFCQLAKRYKKALSVI 522 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 D+D+FK++ND YGH GD+VL IQ ++ D ++AR GGEEF + VP + Sbjct: 523 FYDLDHFKAVNDTYGHAAGDEVLRQITTRIQSMLRDTDILARYGGEEFCILVPETDGDHA 582 Query: 239 LLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 L AE+IR+ + ++L +TVS+GV + + + + L+ AD +Y + Sbjct: 583 YLFAERIRQRISESSVNLSSGESLQVTVSMGVATYQ-----EDEQGSSLIDRADQGVYEA 637 Query: 298 KKDGRNRTS 306 K+ GRN Sbjct: 638 KRRGRNCVV 646 >UniRef50_B4RZE8 GGDEF domain protein n=2 Tax=Alteromonadales RepID=B4RZE8_ALTMD Length = 325 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 7/181 (3%) Query: 135 INSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDN 191 + L +++ + D LT +++R E ++ + T ++LDID+FK IND Sbjct: 148 MEHLNQELKTASRVDGLTGLFNRRYWQERFDEMYKLCVRRDKPSTAVMLDIDHFKRINDT 207 Query: 192 YGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVEL 251 YGH+ GDKV+ + A I++ V + L R GGEEFA+ + D ++AE+IR+ + Sbjct: 208 YGHQAGDKVIKMLAALIKRCVRETDLAGRYGGEEFAIILNDSTVEDARIVAERIRQLAQR 267 Query: 252 QPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 + +++ TVS+G+ +++ + AD LY +K+ GRN+ Sbjct: 268 LVVEHEGESINFTVSLGLAQFCSAFKGPL----AWLECADKALYDAKESGRNQYRVYDTS 323 Query: 312 E 312 + Sbjct: 324 Q 324 >UniRef50_D1TF13 Response regulator receiver protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TF13_9BURK Length = 531 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 9/230 (3%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIA---TMAICPIMVSFSVAAINSLMKQVALRAD 147 ++VA + V +P+ +A L IA + +++F++ + A Sbjct: 289 LIVAIAPAVDDVLAPWQRRSHVAAALTIAFGAVFVVVSWLLAFALRDKQRAQAALLRLAS 348 Query: 148 FDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVF 204 D LT + +R L + L + + + L+V+ +DID+FK ND YGHE GD+VL Sbjct: 349 TDPLTGLSNRRVLDKRLDDEWMRARRDNRPLSVLFIDIDHFKRFNDTYGHESGDEVLVAV 408 Query: 205 ARHIQKIVGDK-GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY- 262 A I + LVAR GGEEFAV +P +AE+IR+ VE + + Sbjct: 409 ADCIASVARRSVDLVARYGGEEFAVVLPDTTAQGAFAVAEQIRRKVESRVIVRGHEAPQA 468 Query: 263 LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 +TVS+G + R S + L+ AD LY +K +GRNRT + ++ E Sbjct: 469 VTVSVGCATARPSTADFANGLE-LLAAADAQLYVAKNEGRNRTRSAQWDE 517 >UniRef50_Q48M78 Sensory box-containing diguanylate cyclase, putative n=9 Tax=Proteobacteria RepID=Q48M78_PSE14 Length = 459 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 11/215 (5%) Query: 103 GSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY- 161 GS F S + + +S V +++ A D LT + +R Sbjct: 252 GSLFYAEHSISPLCNLEGTITHYVSISQDVTTRLGREQKLLEIAHSDPLTGLNNRRAAEH 311 Query: 162 --EALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 E L + + ++++ DID+FKS+ND YGH GD+VL+ A +++ + + + A Sbjct: 312 TLERLIDTARISGKPFSLIIGDIDHFKSVNDRYGHPAGDRVLTSVAVILKQRIRLQDVAA 371 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTL 279 R GGEEF + VP + +A++IRKGVE +T+S+GV Sbjct: 372 RWGGEEFLILVPDSSLDHAAELADRIRKGVEDLLIPNTG---SVTISLGVAQLSP----- 423 Query: 280 TDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 314 + L+ AD LY++K+ GRNR + + + Sbjct: 424 GETAASLIQRADKALYQAKRRGRNRVDIAQADDTI 458 >UniRef50_Q7NZV8 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NZV8_CHRVO Length = 383 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 10/198 (5%) Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH- 174 L +A I ++ + KQ+ A D LT++ +R E + +H Sbjct: 189 LALAQRITRIIAIAL---QRDGHEKQLYRLATQDGLTELNNRRQFIELADREIERSRRHG 245 Query: 175 --LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPS 232 ++V+++D+D+FK IND+YGH GD+V+ F++ ++++ L R+GGEEFA +P Sbjct: 246 SRMSVLMMDLDHFKDINDHYGHAVGDEVIRHFSQVCREVLRASDLCGRLGGEEFAAVLPD 305 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 D +AE++R + +L TVSIGV A D ++++ AD Sbjct: 306 TGLDDARQVAERLRSLASSARLSAVSGSLGYTVSIGVAERHADE----TDIDEVLGRADK 361 Query: 293 CLYRSKKDGRNRTSTMRY 310 LY++K+DGRNR S Sbjct: 362 QLYQAKRDGRNRVSGAAP 379 >UniRef50_A0YVN1 PleD-like protein n=2 Tax=Cyanobacteria RepID=A0YVN1_9CYAN Length = 1252 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 11/222 (4%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDF 150 ++ + + + + + Q+ A+ +A + + ++ A L ++ ++ D Sbjct: 1034 MMAQGNTLGLLYIATLTPGQLTPAKRQLARTVVEHLAIAL---ANVKLQEKFKAQSMRDA 1090 Query: 151 LTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARH 207 LT +++R L E+L+ + + + ++++DID+FK ND +GH+ GD+VL AR Sbjct: 1091 LTGLFNRRYLEESLEQEIHRARRNHYSVGIVMIDIDHFKRFNDQFGHDAGDEVLKTVARL 1150 Query: 208 IQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTL-YLTVS 266 +Q + + R GGEE + +P + D +E+IR +E ++ ++L +T S Sbjct: 1151 LQGSIRSSDIACRYGGEELTLILPEASLSDTQARSEQIRYMIEHLQLHYENQSLGSITAS 1210 Query: 267 IGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 GV + ++ ADT LY++K GRNR Sbjct: 1211 FGVACF----PEHGETLEAVLRIADTALYQAKALGRNRVVCA 1248 >UniRef50_C9RM68 Diguanylate cyclase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RM68_FIBSS Length = 566 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 8/190 (4%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDY 184 V + K++ L + D LTQ+ +R ++ ++ + + +++ +DID+ Sbjct: 374 VKERTYELEQANKKLDLISRTDELTQLPNRRDMHRTIEKEVDRANRFKKAFSIIFIDIDH 433 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK +ND YGH GD VL A I+ ++ ++AR GGEEF +P D +AE+ Sbjct: 434 FKDVNDTYGHAAGDAVLKSVASTIRSLLRKYDVLARYGGEEFLTLLPETELKDAAHVAER 493 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 RK +E Q + + + +T+++GV + + + AD LY K+ GRNR Sbjct: 494 FRKQIENQTIFFGGQEIKVTITLGVAQFDSGLGA-----ERCIQLADKALYEGKEHGRNR 548 Query: 305 TSTMRYGEEV 314 + V Sbjct: 549 VILWTDDQAV 558 >UniRef50_A0KXZ1 Diguanylate cyclase n=4 Tax=Shewanella RepID=A0KXZ1_SHESA Length = 329 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 11/195 (5%) Query: 123 ICPIMVSFSVAAINSLMKQV-------ALRADFDFLTQVYSRSGLYEALKSPSLKQTQHL 175 + I ++ + + + + AD D LTQ+Y+R + + + + Q L Sbjct: 132 LVRIEIATDITERKQMEQALIEAKSTAERLADTDELTQLYNRRAFFNLGRQIAQQTAQPL 191 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 ++ DID+FK IND +GH GD L AR Q + ++AR+GGEEF + +P+ + Sbjct: 192 AFIMFDIDHFKRINDRWGHAMGDAALIHIARLTQTKLRTNDILARLGGEEFGLILPNTHH 251 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDD----FNKLMVEAD 291 +AE IR G + QP +++ T S G+ S + D+ L AD Sbjct: 252 EQAWQVAESIRHGFDTQPLQLNGHSIHCTASFGISSLVLPQINHPDEAQTLLETLFNNAD 311 Query: 292 TCLYRSKKDGRNRTS 306 + ++K+ GRN+ Sbjct: 312 QAMMQAKRAGRNQVC 326 >UniRef50_C5T1B3 Diguanylate cyclase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1B3_ACIDE Length = 445 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 9/275 (3%) Query: 40 AIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVID 99 I ++ + + V + VRY V L V V +L Sbjct: 166 GIRFALAGLVAGVYFLLTAHTLARGGFHNVPVRYLFAVVSGLHGVFLLVRPLLFRLVAPG 225 Query: 100 ISVGSPFSIPQMFSARLGI-ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRS 158 + + + S + + AT+++ + + + +++ A+ D LT V++R Sbjct: 226 TVEDADAGMVALLSQFVVLEATLSLVLMAFGALMLTNEHITRELRHLAEVDPLTNVFNRR 285 Query: 159 GLYEALKS---PSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDK 215 L+ + + L V+++D+D+FK IND +GH+ GD+VL F + + Sbjct: 286 AFLTLLEKAISNAQRTQSGLPVLVIDLDHFKKINDTWGHQSGDEVLRHFVALANGCLRKE 345 Query: 216 GLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRAS 275 ++ R+GGEEFA+ +P+ + +AE++R V P + + LTVSIGV Sbjct: 346 DVMGRLGGEEFAIFLPNASSEGSQAVAERLRALVAHHPAMTGRGPIALTVSIGVTQYGG- 404 Query: 276 YLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 + + ++ AD +YR+K+ GRNR T+ Sbjct: 405 ----GETSDFVLQRADEAMYRAKERGRNRVETLSP 435 >UniRef50_B1XII1 PleD protein n=3 Tax=Bacteria RepID=B1XII1_SYNP2 Length = 516 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 141/347 (40%), Gaps = 43/347 (12%) Query: 5 WFSEQFSTGVLIVPCMLTL--AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFP 62 W+ ++ P +L +P E M+ +A+ +SV S+ I Sbjct: 169 WWLASTLAHLIFTPVILLGKDFFSRKIPYHVIE-MLLILAVFISVSWSIFIQSYPVAYLL 227 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP---FSIPQMFSARLGIA 119 L L W RY V+ LL + + I A+ + + S Q F ++ Sbjct: 228 LLILNWTVFRYGAFVSSLLVSIVSILAIYTTAHGLGVFVLESQNQSLLFLQSFMGVFALS 287 Query: 120 TMAICPIM---------------------------VSFSVAAINSLMKQVALRADFDFLT 152 ++ + ++ + S A + +++ D LT Sbjct: 288 SLLLSAVVEERSRAQTSLKKALDNSTKLILERTKELRRSEALLRQTNQELQKLVHLDGLT 347 Query: 153 QVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQ 209 Q+ +R + L + + + + L ++L D+DYFK ND+YGH+ GD+ L A+ ++ Sbjct: 348 QIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQGDECLIQIAQAVK 407 Query: 210 KIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY---LTV 265 ++ LVAR GGEEF V +P+ ++A++IR+ V + +TV Sbjct: 408 HLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIAHNATEINEAIVTV 467 Query: 266 SIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 312 S+GV SG F + +AD LY +K+ GRNR E Sbjct: 468 SLGVVSGIPQSQEKPLTF---VKKADQALYLAKQQGRNRIVVAGESE 511 >UniRef50_Q2SUR3 GGDEF domain protein n=54 Tax=Burkholderiaceae RepID=Q2SUR3_BURTA Length = 628 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 70/315 (22%), Positives = 131/315 (41%), Gaps = 17/315 (5%) Query: 4 DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIV--SVIASVVIGGAGSLAF 61 W + V + + I G L + + I +V +++ + I L + Sbjct: 319 PWIAGFVLVCVAVAAIAYS-PIAGHLWTRASMEGGAMIVSLVNVALLLARRIRTPLMLVY 377 Query: 62 PLPALIWCAVRYTPQV------TCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR 115 + + + + L A +++ V+ ++ + S ++S + Sbjct: 378 GISVMSFALSSIAFILGKPWNHMWWLAHAIFAAGFFMLSFGVVQ-ALITTRSFATVYSQQ 436 Query: 116 LGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ-- 173 +A +A ++ + +++ A D LT +R E +++ + + Sbjct: 437 DLMARLAESMARTEGALQELKRTNQKLEHLATTDPLTGASNRRKFIEQMQAEIARAKRDG 496 Query: 174 -HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPS 232 +++ LD+D FK+INDNYGH+ GD VL F R + +AR+GGEEF V +P Sbjct: 497 TAFSLLALDLDNFKTINDNYGHQVGDVVLRNFVRQCLAAIRPYDHIARVGGEEFMVLLPR 556 Query: 233 VNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADT 292 + +AE++R + F +TVSIGV D ++++ AD Sbjct: 557 MLADTASGIAERVRTTIANASFGIDGTHTPVTVSIGVSQYG----RDGDTVDEILSAADK 612 Query: 293 CLYRSKKDGRNRTST 307 LYR+K +GRNR Sbjct: 613 LLYRAKNEGRNRVVA 627 >UniRef50_A4CE22 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE22_9GAMM Length = 357 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 141/312 (45%), Gaps = 20/312 (6%) Query: 8 EQFSTGVLIVPCMLTLA---IPGVLPRFKAEQMMPAIALIVSVIASVVIGG----AGSLA 60 + T +L+ ++ L+ I P F + + ++ ++ V GG A Sbjct: 50 DSLLTCILLASSLVVLSNAVISHFHPYFGVSCYITGLGVVGLILGLVFTGGHQNTALYWL 109 Query: 61 FPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 +P P + + Y + L + + ++ + ++ + + S + I Sbjct: 110 YPFPLVYFILFDYRKGLVANLLIFSAILFLLYQPDWILAEYQPAE-KSRFIASYLVTIFL 168 Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTV 177 + S ++S+ Q +A+ D LTQ+ +R L + ++ + + V Sbjct: 169 SFVAEYFRFHSHQELSSINYQRQKQANTDPLTQLPNRRFLDSVFFIGADREPKHYFPMVV 228 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++ DID+FK +ND YGH+ GD VL A ++ + +VAR+GGEEF + +P VD Sbjct: 229 VMADIDFFKRVNDTYGHDTGDHVLKHVASLLKSSLRGFDVVARIGGEEFLILLPQTMLVD 288 Query: 238 GLLMAEKIRKGVELQPF----TWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTC 293 G+ +AEKIR + PF QQ + LTVS GV + + N ++ AD+ Sbjct: 289 GISVAEKIRIECQNTPFNQFDNLQQVYIDLTVSFGVAEASS-----AEQLNNAIMAADSK 343 Query: 294 LYRSKKDGRNRT 305 LY +K+ GRN+ Sbjct: 344 LYLAKEQGRNQV 355 >UniRef50_D1U463 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U463_9DELT Length = 974 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 7/187 (3%) Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVMLL 180 V + L +++ A D LT +R + E +++ L V++L Sbjct: 791 LLYSVIHDITERVRLEREMKRLATTDSLTGAANRHEFFRLAELELRRAMRYGHSLAVLML 850 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 DIDYFKSIND +GH+ GD VL + ++ + D + R+GGEEFA +P + G+L Sbjct: 851 DIDYFKSINDTHGHQTGDAVLKALSALVRTTLRDTDIFGRLGGEEFAAVLPETDLAGGVL 910 Query: 241 MAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKD 300 +A+++R+ + + + TVSIG+ R S + + AD +Y++K+ Sbjct: 911 VADRLRRELGALKVRLRDIEVMFTVSIGLTETRKSERL----IDDAINRADEAMYKAKRM 966 Query: 301 GRNRTST 307 GRNR + Sbjct: 967 GRNRVES 973 >UniRef50_A8DJI0 Sensor protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJI0_9BACT Length = 750 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 123/293 (41%), Gaps = 23/293 (7%) Query: 24 AIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTF 83 F+A +P + LI + + + + L LI +LT Sbjct: 452 PATLYATHFEASLRLPDVVLIDADL-------PMADEYELCRLIKRNEATRHLPVLVLTP 504 Query: 84 VTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVA 143 E + + +P + ++ I A+ Sbjct: 505 SPETTEKLRGLEVGATDVLTTPINPKELV-------VRVKALIAQKREFEAMLRAYHSAR 557 Query: 144 LRADFDFLTQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKV 200 RA D LT +++ + E L + + + L+V++LD+D FK ND GHE G+++ Sbjct: 558 HRAITDGLTGLFNHAYFLEKLTREAELAGRSGRPLSVIMLDVDRFKHFNDTNGHETGNEL 617 Query: 201 LSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKT 260 L AR +++ L+AR GGEEF V +P+ ++AE++R+ V PF ++ Sbjct: 618 LKDLARLMERCFRRSDLLARYGGEEFVVLLPNTPKSQAAVLAERLRRRVAEYPFVGRESQ 677 Query: 261 L--YLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 311 LTVS+GV + T T D +L+ AD LYR+K++GRNR + Sbjct: 678 PGGCLTVSLGVAAM----PTDTSDPKQLLELADRALYRAKQNGRNRVCVVESE 726 >UniRef50_C6P6Y5 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6Y5_9PROT Length = 671 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 9/207 (4%) Query: 108 IPQMFSARLGIATMAICPIMVSF-SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKS 166 +P S I I+V+F + +++ RA D LT + +R YE + Sbjct: 469 LPISVSVSAIIREQQAAGIVVAFHDITERKKFEQELERRAQIDALTSLNNRRHFYELAEQ 528 Query: 167 PS---LKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGG 223 + + L +M+LD+D+FK IND YGH GD VL + + + ++ R+GG Sbjct: 529 EILRTKRYGKPLALMMLDVDHFKDINDTYGHHVGDTVLQTLGAVCLQTMREIDIIGRLGG 588 Query: 224 EEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ-QKTLYLTVSIGVGSGRASYLTLTDD 282 EEFA+ +P AE++R V + +TL T+SIGV A D Sbjct: 589 EEFAILLPEATAAQAFDAAERLRLAVAAIAMPLEQGQTLSFTISIGVTGLVA----KDSD 644 Query: 283 FNKLMVEADTCLYRSKKDGRNRTSTMR 309 ++ AD +Y++K+ GRNR + Sbjct: 645 IADMLKRADEAMYQAKRSGRNRVCSQE 671 >UniRef50_Q2RNX7 Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RNX7_RHORT Length = 492 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 7/193 (3%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHL 175 A A+ + V + + + + A D LT +R EA + + + + + Sbjct: 304 AGQAVGLVAVITDITEQKRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHGEPV 363 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 TV L DID+FK +ND +GH GD+ L F + + ++ RMGGEEFA+ +P Sbjct: 364 TVALADIDHFKRVNDQHGHATGDEALKTFVATVHGALRASDVLGRMGGEEFALILPHTAL 423 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 +L+A+++R+ + + TVSIG+ T + L+ AD LY Sbjct: 424 ASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELG----THGTTIDTLLQAADEALY 479 Query: 296 RSKKDGRNRTSTM 308 R+K GRNR Sbjct: 480 RAKSAGRNRVIAA 492 >UniRef50_A1RG31 Diguanylate cyclase n=3 Tax=Shewanella RepID=A1RG31_SHESW Length = 362 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 70/293 (23%), Positives = 134/293 (45%), Gaps = 17/293 (5%) Query: 26 PGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALI--WCAVRYTPQVTCLLTF 83 P LP + + +S + +++G + L A I A + P L+ Sbjct: 78 PKQLPPIIQWSWVVVFSQSLSSV--LILGADAGFQYYLLATIPPSFASIFKPLFYKLIQA 135 Query: 84 VTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAIN---SLMK 140 + + L+ + +M S I + C ++ S A S + Sbjct: 136 LI-IIVFFLICDIWFIDYEPYYLYSDEMISLFRHINVLGACALLAGVSYAYSQIVMSAIT 194 Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECG 197 + A+ D LT + +R L + + + + ++++L DIDYFK IND+YGH G Sbjct: 195 ALRNVANTDELTGLINRRSLTALIDREAARTLRTHASMSLVLCDIDYFKRINDSYGHAAG 254 Query: 198 DKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQ 257 D VL A +Q ++ + +VAR GGEEF + +P+ + ++ + +AE++R+ V +++ Sbjct: 255 DHVLVNVANLLQGVLREYDVVARWGGEEFLLLLPNTDIIEAMKVAERLREIVACSHLSFE 314 Query: 258 QKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 ++T+ +T+++GV ++++ + AD LYR K+ GRN Sbjct: 315 EQTIPVTMTLGVAVL------GDENWHSTLARADEALYRGKRQGRNCVVQASA 361 >UniRef50_Q1D095 Response regulator/GGDEF domain protein n=3 Tax=Cystobacterineae RepID=Q1D095_MYXXD Length = 347 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 105/248 (42%), Gaps = 19/248 (7%) Query: 73 YTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSV 132 + L+T A V D + PF + ++ + + + + Sbjct: 99 FGFIPVILMTARQAA-GKVEGLELGADDYLVKPFDMLELSARVKSMLRLKALQDALVEKN 157 Query: 133 AAINSLMKQV-----ALRA--DFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDI 182 ++ K++ L A D LT + +R E L + + L++++LDI Sbjct: 158 RELDRANKELAARREELLALTRTDALTGLSNRRAFEERLNDEFARSRRYGAPLSLVMLDI 217 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D+FK IND++GH GD VL A+ + + + L+AR GGEEF +P P D L + Sbjct: 218 DHFKRINDSFGHPFGDHVLKAVAQTARARLREVDLLARYGGEEFIALLPETGPADALRVC 277 Query: 243 EKIRKGVELQPFTWQQKT-----LYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 E++R + + + LT S+GV + + L L+ AD LY + Sbjct: 278 ERVRDAIAALELEHVGGSGKPQCVRLTASLGVATVPSGDLP---SAEALLRAADASLYAA 334 Query: 298 KKDGRNRT 305 K GRNR Sbjct: 335 KGAGRNRV 342 >UniRef50_A1SRM4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRM4_PSYIN Length = 1078 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 93/200 (46%), Gaps = 11/200 (5%) Query: 112 FSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ 171 S+ I + V + +++ L A D LT + +R L S + Sbjct: 887 ISSAAIILDGRTIMVGFFHDVTERKKVEEEIKLLATTDSLTGIANRRAFSTHLASELERS 946 Query: 172 TQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAV 228 + L++++ DIDYFK +NDN+GH+ GD VL + +++ + +VAR GGEEF + Sbjct: 947 NRYGTPLSLVMFDIDYFKKVNDNFGHDAGDDVLQALSELVKRNIRAVDIVARWGGEEFML 1006 Query: 229 AVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMV 288 +P + EK+R+ + PF + LTVS G+ L +D + Sbjct: 1007 LMPESDISAATAAIEKLRREISDFPF---GQVGSLTVSFGITVF-----VLNEDSKVFLK 1058 Query: 289 EADTCLYRSKKDGRNRTSTM 308 D LY++K+ GRNR + Sbjct: 1059 RVDDALYQAKEKGRNRVEIL 1078 >UniRef50_C4KD29 Response regulator receiver modulated diguanylate cyclase n=2 Tax=Betaproteobacteria RepID=C4KD29_THASP Length = 634 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 111/267 (41%), Gaps = 14/267 (5%) Query: 56 AGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR 115 G L + +LT E+ + +D + P ++ + + Sbjct: 367 PGMDGLDLARALRATEWGQTMYLIMLTGHENEDEVSEAFEAGVDDFLVKPVNVRTLRARL 426 Query: 116 LGIATMAICPIMVSFSVAAINSL-------MKQVALRADFDFLTQVYSRSGLYEALKSPS 168 A + +++A A D LT + +R AL Sbjct: 427 RAARHYVQLLEAWERDRAQLKQFAAELAISNRRLAHAAMTDLLTNLPNRRSGMNALAKAW 486 Query: 169 L---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEE 225 + Q L+VM+LDID+FK IND++GH GD VL A+ IQ+ + RMGGEE Sbjct: 487 AASSRFEQPLSVMMLDIDHFKRINDSHGHAVGDTVLRDVAQAIQQSARKDDSMCRMGGEE 546 Query: 226 FAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNK 285 F V P+ + + AE++R+ VE + + +VSIGV + + Sbjct: 547 FLVICPNTDLKAAVQAAERLRRMVERLRIQAGETEIQTSVSIGVATREVGMTET----DA 602 Query: 286 LMVEADTCLYRSKKDGRNRTSTMRYGE 312 L+ AD LYR+K+ GRNR+ + G+ Sbjct: 603 LVNAADRALYRAKQAGRNRSCVVVQGQ 629 >UniRef50_B1J820 Diguanylate cyclase n=1 Tax=Pseudomonas putida W619 RepID=B1J820_PSEPW Length = 532 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 13/285 (4%) Query: 29 LPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF-PLPALIWCAVRYTPQVTCLLTFVTGA 87 +P + M+ A + +VV+ LA PL + + Y V+ + + Sbjct: 243 VPNYIGVPMLAGFAPVPEAHWAVVVQTPRDLALAPLGEMTRKVLLYILPVSIIGLLLMLW 302 Query: 88 VEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQ----VA 143 + L S S Q I + + ++ L+++ + Sbjct: 303 MTYRLTLPLRQLAHSASHLSATQTGEQLRRIDAWYVEVAAIRRALLTGEQLLQEKFGKLR 362 Query: 144 LRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSV 203 +A D LT + +R + AL + ++ V+ LDID+FK +ND +GH+ GD+VL Sbjct: 363 QQAQSDALTGLANRRAMQLALDALMQ-SSRAFAVLALDIDHFKRVNDTFGHDAGDEVLKH 421 Query: 204 FARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYL 263 A ++ L R+GGEEF + +P D +AE+IR VE K L Sbjct: 422 LAELLRHNSRQDDLPCRVGGEEFTMLLPDTGLADARRIAERIRSAVEQADSPHVGK---L 478 Query: 264 TVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTM 308 TVSIGV R ++ +AD LY++K +GRNR + Sbjct: 479 TVSIGVACRRPDTQQAG----SVLKQADEQLYKAKHNGRNRVEVL 519 >UniRef50_Q31M78 Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor n=3 Tax=Synechococcus elongatus RepID=Q31M78_SYNE7 Length = 1037 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLK-----QTQHLT 176 I + +S + L +++ +A D LT + +R ++ + + L+ Sbjct: 841 IIGLLGISTDITEQKKLEQKLQQQATTDALTGILNRRQFITLAQAELNRIYRIQRDTSLS 900 Query: 177 VMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPV 236 ++++DID+FK+IND+YGH GD+VL ++ Q+ + + + AR+GG+EF + +P N Sbjct: 901 LVIIDIDHFKTINDSYGHTVGDQVLILWTNICQQNIREVDIFARLGGDEFVLMLPETNGK 960 Query: 237 DGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 + ++IR+ V Q Q+ + +T+S+G+ L ++ + AD LY+ Sbjct: 961 QAYQVMDRIRQLVIQQSLHLPQQAIAITISVGIAVWTPEIL----TLDQFLERADRALYQ 1016 Query: 297 SKKDGRNRTSTMRYGEEVV 315 +K+ GR+R + E + Sbjct: 1017 AKQQGRDRIILLDTSSEEI 1035 >UniRef50_B8KV43 Sensory box histidine kinase n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KV43_9GAMM Length = 494 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 7/196 (3%) Query: 118 IATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---H 174 I+ IM ++ ++ +++ AD D LT +R L +KS + + Sbjct: 296 ISGQFAGSIMFLKDISDRKAVERRLKAIADKDPLTGAGNRRALESVIKSELSRAHRHDEP 355 Query: 175 LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVN 234 L+V +LDID+FKS+NDNYGH GD+VL A+ + ++ AR+GGEEFA+ +P + Sbjct: 356 LSVAILDIDWFKSVNDNYGHLMGDRVLIDIAKLCKDLIRPYDTFARIGGEEFALLLPKTS 415 Query: 235 PVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCL 294 + +AE++R+ V + + +T+SIGV +++ AD L Sbjct: 416 VPEAERLAERLRQRVAEHTTQAGENRVQVTISIGVALLAKG----AKTLEEMIESADRAL 471 Query: 295 YRSKKDGRNRTSTMRY 310 Y +K DGRNR T Sbjct: 472 YCAKLDGRNRVVTFEQ 487 >UniRef50_B4VMP7 GGDEF domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMP7_9CYAN Length = 505 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 15/233 (6%) Query: 81 LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMK 140 + F + I++ S Q+ +A+LG I A+ + Sbjct: 268 ILFRDRVLAILVFFKQARSESEPRLIDFIQLIAAQLGTLMQRIKVE------TALFEANQ 321 Query: 141 QVALRADFDFLTQVYSRSGLYEALKSPSLK---QTQHLTVMLLDIDYFKSINDNYGHECG 197 ++ D LT + +R + + + + L+++L DID+FK ND YGH+ G Sbjct: 322 KLKYLVTIDGLTGIANRRKFDQYIHREWQRLFREQLPLSLILGDIDFFKRYNDTYGHQAG 381 Query: 198 DKVLSVFARHIQKIV-GDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW 256 D L A I+ +V LVAR GGEEFAV +P+ N + +AE IR+GVE Sbjct: 382 DDCLRNVATKIRLLVKRPADLVARYGGEEFAVILPNTNAKGAIHVAETIRQGVETLKIPH 441 Query: 257 QQKTLY--LTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 +T+S+GV S + L + L+ +AD LYR+K GRN+T Sbjct: 442 GGSESSKYVTLSLGVSSLIPNSLV---NVEGLINQADQALYRAKAGGRNQTVA 491 >UniRef50_A4TZM8 GGDEF domain n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TZM8_9PROT Length = 578 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 8/209 (3%) Query: 103 GSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYE 162 G + SA L + I V ++ ++ +++ A D LT ++R Sbjct: 368 GGRLDTMVLKSAYLDDEGRPVGVIGVLTDISDRKAMERELRRLATTDSLTGAFNRRHFLA 427 Query: 163 ALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVA 219 A + + + LT+++LD+DYFKSIND +GH GD L ++ + D ++ Sbjct: 428 AAGTELERANRYGNPLTLLMLDVDYFKSINDAHGHGTGDDALRRLVEGLRHALRDIDVIG 487 Query: 220 RMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTW-QQKTLYLTVSIGVGSGRASYLT 278 R+GGEEFAV +P L+ AE++R V L TVSIG+ + RA Sbjct: 488 RLGGEEFAVLLPETGMAGALITAERLRAQVADLRLDLPDGGQLAFTVSIGIAAPRAE--- 544 Query: 279 LTDDFNKLMVEADTCLYRSKKDGRNRTST 307 ++ AD LYR+K +GRNR Sbjct: 545 -DGSVEAVLARADKALYRAKDEGRNRVCA 572 >UniRef50_A6G7C6 FHA domain/GGDEF domain protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G7C6_9DELT Length = 297 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 56/173 (32%), Positives = 89/173 (51%), Gaps = 7/173 (4%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYG 193 S +++ + D LTQV++R E L+ + + + L +++ DID+FK ND YG Sbjct: 126 SYHEEIFRLSTVDGLTQVFNRRYFMETLERELSRARRYDRPLALLIFDIDHFKRCNDTYG 185 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD VL A + +V+R GGEEF V +P ++ AEKIRK + + Sbjct: 186 HRAGDFVLRRIAELVTMRARKVDVVSRYGGEEFTVILPEIDIRGASAFAEKIRKLIADET 245 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 F ++ + + +T+SIGV S + + ++ AD LY +K GRNR Sbjct: 246 FIFEGRKIPVTISIGVAEIGPSVA----NADDMIQTADRRLYAAKTGGRNRVV 294 >UniRef50_B7IH39 Diguanylate cyclase n=2 Tax=Bacteria RepID=B7IH39_THEAB Length = 167 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 11/173 (6%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNYG 193 L K++ ++ D LT +Y+R + E ++ + + +++++DID FK IND YG Sbjct: 2 ELNKKLKYLSERDQLTDLYNRHKMNEEIRKHYYNFKRYGRPFSLLMVDIDKFKKINDTYG 61 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD+VL A+ + K + + +R GEEF + + + + +AEKIRK +E + Sbjct: 62 HMVGDEVLKKLAKILVKNIRKTDIASRWVGEEFLILLSETDLEQAIEVAEKIRKTIEKES 121 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 F K + +TVSIGV + + L++ D LY++K+ GRNR Sbjct: 122 FP---KDIRITVSIGV-----DSVENHEHIKDLLILVDEKLYKAKESGRNRVE 166 >UniRef50_A9B3D1 Diguanylate cyclase n=2 Tax=Bacteria RepID=A9B3D1_HERA2 Length = 1774 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 7/193 (3%) Query: 119 ATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSL---KQTQHL 175 A + + + A L QV A D LTQV +R +E + + L Sbjct: 1586 AELGMVFASQAAIAIANAQLFGQVQRLAITDSLTQVSNRRHFFELAERQWILTCSSDHPL 1645 Query: 176 TVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP 235 + M+LD+D+FK +ND+YGH GD VL A + + L+ R GGEEFA+ +P + Sbjct: 1646 SAMMLDVDHFKRVNDSYGHSVGDLVLRTVADLCRANLRPSDLLGRYGGEEFAILLPDTDV 1705 Query: 236 VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLY 295 L +AE++R + +Q ++ LTVSIGV + L+ AD LY Sbjct: 1706 SAALTIAERLRVAIANHVINHEQASINLTVSIGVTGLS----KDDNSVASLLDRADRGLY 1761 Query: 296 RSKKDGRNRTSTM 308 +K+ GR+R + Sbjct: 1762 IAKETGRDRVTMA 1774 >UniRef50_A1VD57 Diguanylate cyclase n=3 Tax=Desulfovibrio vulgaris RepID=A1VD57_DESVV Length = 487 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 6/175 (3%) Query: 139 MKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDYFKSINDNYGHE 195 +++ L+AD D LTQ+++R L + + +T+++LDID+FK++ND YGH Sbjct: 306 YREIKLQADHDALTQLHNRRSFDHRLAEEVDRHQRYGMPMTLLMLDIDHFKAVNDTYGHP 365 Query: 196 CGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFT 255 GD VL A+ ++ AR GGEEF V +P + G + AE++RK + Sbjct: 366 AGDAVLREVAQTMRNACRTTDFAARYGGEEFCVILPHTDGKCGRIFAERLRKRLASSRVE 425 Query: 256 WQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 KT+ +TVSIG+ + A+ +L+ EAD LY +K GRN + Sbjct: 426 VDGKTIAVTVSIGLATLSAAAPL---SPERLVCEADGALYAAKAAGRNIVCEAQE 477 >UniRef50_C6WY37 Diguanylate cyclase n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WY37_METML Length = 395 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 135/304 (44%), Gaps = 11/304 (3%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 G+LI+ +T+ + M AI + + S+ A +L + A Sbjct: 93 IPWGILILFVAMTICQGIWFSVINPDTRMRAIVNSL-LFFSIYTVCARALLVKIEASQKL 151 Query: 70 AVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVS 129 A +T L + ++++ + ++ + SI + +A++ + Sbjct: 152 AYWFTGASFAALALLMLTRAVLMLLSPDAEVGLHVNTSINTL---PFVVASLLEFSVAFG 208 Query: 130 FSVAAINSLMKQVALRADFDFLTQVYSRSGLYE---ALKSPSLKQTQHLTVMLLDIDYFK 186 + + L+ V A D LT +R + E L++ ++ + L +M++DID+FK Sbjct: 209 LLLMLNHRLIADVYQMASRDALTGAMNRRRIEEEAVRLRARCIRTGEPLAIMMIDIDFFK 268 Query: 187 SINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIR 246 SIND YGH GDKVL A QK + + AR GGEEF + + S + L +AE++R Sbjct: 269 SINDRYGHPAGDKVLRAIADIAQKSIRAEDYFARYGGEEFCMLLTSTTESEALDLAERLR 328 Query: 247 KGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 T ++ L +TVSIGV L D ++ AD LY +K++GRNR Sbjct: 329 LAFAEFTLTLGKEQLNITVSIGVADSSMVGLEFAD----MVTAADKALYCAKENGRNRVI 384 Query: 307 TMRY 310 T Sbjct: 385 TYSS 388 >UniRef50_Q47A94 Diguanylate cyclase n=1 Tax=Dechloromonas aromatica RCB RepID=Q47A94_DECAR Length = 638 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Query: 128 VSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLDIDY 184 + + I L + A D LT +Y+R L E L+ + + L++++LDID+ Sbjct: 457 LHARIEEIGRLQVALQELAVRDSLTGLYNRRYLDETLEREVSRARREGIPLSLVMLDIDH 516 Query: 185 FKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEK 244 FK +ND YGH+ GD+VL + A + + + + R GGEEF + +P++ +L A+ Sbjct: 517 FKQVNDTYGHQVGDEVLRILASTLSADIRAEDVACRYGGEEFLILLPNMPLETTMLRAQG 576 Query: 245 IRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNR 304 R VE + T+S+GV + + L AD LYR+K +GRN+ Sbjct: 577 WRSAVEALSVKHGNFQITFTISLGVAAY----PEHGKTPDDLTRCADQALYRAKNEGRNQ 632 Query: 305 TSTM 308 S Sbjct: 633 VSVF 636 >UniRef50_A0L8W1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8W1_MAGSM Length = 564 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 10/195 (5%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTVML 179 I + V L +Q+ + D LT++ +R + E L + ++ L+++L Sbjct: 375 IGSAALILDVTDEKRLEQQLRELSTTDGLTKLINRRRMDELLDEELKRAVRYGLNLSILL 434 Query: 180 LDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGL 239 LD+D+FK ND YGHE GD VL A ++ + R GGEEF V +P+ + + Sbjct: 435 LDVDHFKKFNDTYGHEQGDHVLIALAAEMKSYFRNIDYPCRYGGEEFFVILPNTDADGAI 494 Query: 240 LMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKK 299 +A+++R+ V + L +T+SIGV S +T + ++ AD+ LY +K+ Sbjct: 495 KVADRLRERVAEKEV----DGLRVTISIGVASYPDLSITR---PDAMVRAADSALYVAKE 547 Query: 300 DGRNRTSTMRYGEEV 314 GRN+ ++ Sbjct: 548 QGRNKVVYASEAKQT 562 >UniRef50_B3PC25 YaiC/YhcK/ArdA family protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC25_CELJU Length = 330 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 141/316 (44%), Gaps = 20/316 (6%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 F G + LA P + + A +++ L ++W Sbjct: 20 FLNGFVWPHIAYWLAKRSQSPFLREHLHLQLDAASGGFWVALMGFNPLGSCLIL-MMLWM 78 Query: 70 ----AVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR--LGIATMAI 123 A + + ++T + G + +LV S + +++A L I +AI Sbjct: 79 NNIAAGGFRLFLRGVVTSLAGLLMGLLVVRSFLHWEFNLSSDPVMIYAALPMLVIYPLAI 138 Query: 124 CPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEA---LKSPSLKQTQHLTVMLL 180 I F+ ++S + + + D LT +++RS E L + + + Q L ++LL Sbjct: 139 GSITYRFA-MQLHSQKELLKHLSRTDGLTGLFNRSYWEERVLALINQTQRSGQPLCLVLL 197 Query: 181 DIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLL 240 D+D+FK IND YGH GD++L A+ +Q + + L+ R GGEEFA+A+ + + L Sbjct: 198 DVDHFKMINDTYGHGRGDQILQQIAQCLQVNLREHELLGRYGGEEFALALANTSLPAALA 257 Query: 241 MAEKIRKGVELQPFTWQQK----TLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYR 296 AE++R+ V F + + L ++S+G+ + F + AD LY+ Sbjct: 258 TAERLRQAVATMNFADEHEPRLAPLCCSISLGLAPWQPGI-----SFLEWQRAADQALYQ 312 Query: 297 SKKDGRNRTSTMRYGE 312 +K++GRNR+ + E Sbjct: 313 AKREGRNRSCIYQPQE 328 >UniRef50_B6IN39 Response regulator With diguanylate cyclase (GGDEF) domain, putative n=12 Tax=Alphaproteobacteria RepID=B6IN39_RHOCS Length = 482 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 107/270 (39%), Gaps = 15/270 (5%) Query: 46 SVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSP 105 + + + L + + R LL T + + V P Sbjct: 200 FELVIISLTLMREDGLRLCSQLRSHERTRQVPILLLADETDMDRVAKGLELGANDYVIKP 259 Query: 106 FSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK 165 ++ + + + S +Q A D LT +++R L L Sbjct: 260 IDRNELMARTR-------TQVRRKRYQDRLRSNYEQSLSLALTDSLTGLFNRRYLSAHLP 312 Query: 166 SPSLK---QTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMG 222 + + + +L DID+FK +ND +GH GD+VL A + + + LV R+G Sbjct: 313 RLLDRGGGNQKPVAALLFDIDHFKIVNDTWGHSAGDEVLREVAVRTSRNLRNFDLVTRLG 372 Query: 223 GEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQ----KTLYLTVSIGVGSGRA-SYL 277 GEEF V +P + + +AE++R+ + +PF + +T+SIGV Sbjct: 373 GEEFVVVMPDTDLSSAMTVAERLRRRIADEPFKVTATAGTGEITVTISIGVAVADGTDGD 432 Query: 278 TLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 + + L+ ADT LYR K+ GRNR Sbjct: 433 GRGESGDSLLRRADTALYRVKRSGRNRVVA 462 >UniRef50_C8X290 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X290_DESRD Length = 769 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 7/185 (3%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLD 181 + V V A ++ A D LT V++R +E + + L+++L D Sbjct: 582 YVAVRKEVTAQKQAESKLRELATRDSLTGVWNRRYFFELAARELESAQRYKHPLSLILYD 641 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK IND YGH GD+VL + + + + L+AR+GGEEFAV +P + Sbjct: 642 IDHFKRINDTYGHMIGDEVLRQLTQLVGANLRNVDLLARVGGEEFAVLLPHTYLEQAHTV 701 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 A +I +GV + L LT+SIG+ S + L+ +AD LY +K G Sbjct: 702 ARRILRGVNEAVIRTEAGPLQLTISIGMSS----SAHADNCLESLIHDADQALYAAKNKG 757 Query: 302 RNRTS 306 RN Sbjct: 758 RNSIC 762 >UniRef50_A8UY29 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY29_9AQUI Length = 336 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 8/194 (4%) Query: 122 AICPIMVSFSVAAINSLMK-QVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTV 177 + + FS L K ++ +A D LT +Y+R L EA + + +++ Sbjct: 146 ILRSLAFIFSFIVKEELEKKRLLEKAIIDHLTGLYNRFYLEEAGAREIARAKRYGFPISL 205 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++ D+D FK +ND YGH+ GD+VL FA + V + R GGEEF V +P P + Sbjct: 206 IMFDLDNFKQVNDTYGHQVGDRVLVKFASIVSSNVRSTDMPVRYGGEEFVVLLPHTYPEE 265 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 + +AE+IR+ E F ++ + + LTVS G+ + +L + L+ AD +Y + Sbjct: 266 AVKVAERIREEFEKFLFRFEGEVMRLTVSAGISFCNSGECSLGE----LIQMADKAMYEA 321 Query: 298 KKDGRNRTSTMRYG 311 K+ G+NR Y Sbjct: 322 KEKGKNRIEVFSYQ 335 >UniRef50_Q21GT7 GGDEF domain n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21GT7_SACD2 Length = 346 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 24/320 (7%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPA--IALIVSVIASVVIGGAGS-----LAFP 62 F + V+I L G R K M A I +V + SV G L Sbjct: 31 FVSLVVINAVFFYLIYRGYNLRCKDHSMTAAQMIVSLVPTLYSVYFLDLGQARASFLVVA 90 Query: 63 LPALIW--CAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIAT 120 + L++ A+ + + F+ + ++L+ N S+ + Q F+ + + Sbjct: 91 IVPLLYGMLALTTRTFLQIGILFIALYILMILLINKNRPDSINPTMEVLQAFALIVVVIQ 150 Query: 121 MAICPIMVSFSVAAINSLMKQV-------ALRADFDFLTQVYSRSGLYEALKSPSLKQTQ 173 + I +S + + + K++ + A+ D LT + +R ++E L + ++ + Sbjct: 151 ITIIGGYISGLRSKLRNRNKELNIALVKISDMANRDELTGIANRRKIFEVLDTEVKRKRE 210 Query: 174 H---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAV 230 + + +LD+D+FK IND YGH+ GD+VL A + K + R GGEEF + + Sbjct: 211 PNTAIGICILDVDHFKRINDTYGHQAGDEVLKRIAEEVPKSLRTMDCFGRYGGEEFLLIL 270 Query: 231 PSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEA 290 PS + + A ++R+ V F +T+SIG+ ++ + + A Sbjct: 271 PSTSLEGTEIKANRVREEVAKLEFKNLPPGEKVTISIGIAEYFPE-----EEIDATIQRA 325 Query: 291 DTCLYRSKKDGRNRTSTMRY 310 D LY +K GRN Sbjct: 326 DKALYEAKAHGRNCCVVHPS 345 >UniRef50_A9FZW1 FHA domain protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FZW1_SORC5 Length = 299 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 7/174 (4%) Query: 137 SLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSINDNYG 193 +++ D LTQ++++ LYEAL+ + + L ++L DID+FK IND +G Sbjct: 130 QYHEEIYRMTIIDGLTQIHNKRYLYEALEREIIRGRRHERDLAILLFDIDHFKRINDVHG 189 Query: 194 HECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQP 253 H GD VL AR +Q + + AR GGEEFA+ +P + + E +R+ V Sbjct: 190 HLAGDFVLKEVARIVQSRIRRDEVFARYGGEEFAIILPETSIEGAAALGETLRQKVAEHL 249 Query: 254 FTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 F +Q ++ +T+S+GV + T D L+ AD LY +K GRNR Sbjct: 250 FVFQADSIRVTISVGVALLQEGDRTAND----LIKRADERLYHAKNSGRNRVCA 299 >UniRef50_D1U6K0 Diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6K0_9DELT Length = 457 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 7/187 (3%) Query: 125 PIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQ---HLTVMLLD 181 I + +++ L + D LT+V +R E + + ++++D Sbjct: 126 FISQIQDITRRKQAEQELLLVSQQDPLTKVANRRFFMEHATRELTRGKRFHEPQAILIID 185 Query: 182 IDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLM 241 ID+FK+IND +GH+ GD+VL A K + + + R+GGEEFA + + N ++ Sbjct: 186 IDHFKTINDKHGHDVGDEVLKAMATACSKALREVDVFGRIGGEEFAAMLLNTNDSVARIV 245 Query: 242 AEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDG 301 AE++R+ VE K + T+SIG+ S ++ + M AD LYR+K+ G Sbjct: 246 AERVRESVERLSVNVGGKEIPFTISIGLVSFLGG----SNTLDDRMKMADKALYRAKESG 301 Query: 302 RNRTSTM 308 RNR + Sbjct: 302 RNRVEVL 308 >UniRef50_Q4KKJ4 Diguanylate cyclase, putative n=5 Tax=Pseudomonas fluorescens RepID=Q4KKJ4_PSEF5 Length = 727 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 8/175 (4%) Query: 136 NSLMKQVALRADFDFLTQVYSRSGLYEALKSP---SLKQTQHLTVMLLDIDYFKSINDNY 192 +++ +A D LT + +R+ E L+ + L + +LD+D+FK INDNY Sbjct: 557 REHLEEQRQKALIDPLTGLPNRAAWSERLEHEVGQWQQHGNSLLLAMLDLDHFKRINDNY 616 Query: 193 GHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQ 252 GH GDKVL + A ++K + +AR GGEEF + +P+ G+ + E +R +E Sbjct: 617 GHLAGDKVLKIIANVLRKRLRGSDFIARFGGEEFVLLLPNTPWPVGVRIVEALRAAIEAC 676 Query: 253 PFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST 307 PF ++ + + +TVS+G+ + +A + + ++ AD LYR+K GRNR Sbjct: 677 PFHFKGEPVTITVSVGLSAFKAGDRS-----DLVIKRADQALYRAKDAGRNRVEA 726 >UniRef50_Q1MYJ5 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Bermanella marisrubri RepID=Q1MYJ5_9GAMM Length = 642 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 141/346 (40%), Gaps = 46/346 (13%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVV-------IGGAGSLAFP 62 F +L+ + + + + +I + + F Sbjct: 295 FYWYLLLSIVFIFIPYSISIRIGAFFAWTQILLIIYITLYMLNRGHPSSRYFAVAWAVFL 354 Query: 63 LPALIWCAVRYTPQVTCL---LTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSAR---- 115 + AL+ ++ L GA ++ + + + + AR Sbjct: 355 IGALLLALNKFAFLPITLASEYGLQIGAGLEIMFLSLALADRMANTQREKISAQARSLDL 414 Query: 116 ----------LGIATMAICPIM-----------------VSFSVAAINSLMKQVALRADF 148 L A M I +S ++ +++ +++ + Sbjct: 415 AHQVTQEREKLYRAEMENLKIAREHNEVLEKTVDDRTKELSEALEELSNAHEKLKNISVT 474 Query: 149 DFLTQVYSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFA 205 D LT++++R + +S + +H + +++LDID+FK +NDN+GH GD L A Sbjct: 475 DALTKIHNRYFFDQHWRSEFKRAHRHKMSIALIILDIDHFKKVNDNFGHPAGDLCLQKVA 534 Query: 206 RHIQ-KIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLT 264 + I+ + + LV R+GGEEFAV +P + + +AEKIR +E + +W+ KT+ +T Sbjct: 535 QSIRIQANRESDLVCRLGGEEFAVILPGTDEMGAYEVAEKIRHTIEKRHISWEGKTIKIT 594 Query: 265 VSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRY 310 VSIG+ + + N + +AD LY++K +GRNRT Sbjct: 595 VSIGISAMTPR-KSDEKMRNIMFNQADQALYQAKGNGRNRTVIFES 639 >UniRef50_C0Z6I5 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6I5_BREBN Length = 530 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 8/189 (4%) Query: 123 ICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTVMLLDI 182 + + F++ I +Q+ A D LT + +R L E ++ + ++M++D+ Sbjct: 350 LLSRAIRFALTNIKKKTEQLTHDARTDPLTGLTNRRTLEETMQKWMA-EQIPFSIMMMDL 408 Query: 183 DYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMA 242 D FK+IND YGH+ GD+VL FA+ I + + + R GGEEF V V + +A Sbjct: 409 DRFKAINDTYGHQAGDEVLRHFAKIISSSLRPEDVSCRFGGEEFVVLVSHTGLEEAYQVA 468 Query: 243 EKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGR 302 E+IR+ +E + Q LTVS G+ Y + L+ AD +Y++K+ GR Sbjct: 469 ERIRRALETRTNPIGQ---RLTVSQGIA----HYPSHAVSPEGLLHVADEAMYKAKRAGR 521 Query: 303 NRTSTMRYG 311 N+T Sbjct: 522 NQTMIAEEE 530 >UniRef50_Q6AL41 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AL41_DESPS Length = 516 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 4/195 (2%) Query: 121 MAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQH---LTV 177 + I + + +Q+ A+ D LT Y+ AL + +++ +++ Sbjct: 318 LVETTIELEKLTEELAKKNRQLETLANIDGLTNCYNHRYFQNALDQELSRSSRNSLAISL 377 Query: 178 MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVD 237 ++ DID FK ND+YGH+ GD +L R IQ+ + ++AR GGEEF + +P D Sbjct: 378 IMFDIDNFKRFNDSYGHQAGDFILCELTRLIQEQIRKDDVLARYGGEEFVIILPETEKED 437 Query: 238 GLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRS 297 L++AEK+R E F KT +T+S+GV + ++ ++ + + + D LY + Sbjct: 438 ALIVAEKVRHACEEHSFQNIHKTHQITISLGVATEHSAQISPL-NKTSFIDKTDLALYSA 496 Query: 298 KKDGRNRTSTMRYGE 312 K++GRN+ + Sbjct: 497 KENGRNKVVVYSPKK 511 >UniRef50_A3J836 Putative diguanylate cyclase (GGDEF domain) n=1 Tax=Marinobacter sp. ELB17 RepID=A3J836_9ALTE Length = 588 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 81/308 (26%), Positives = 138/308 (44%), Gaps = 16/308 (5%) Query: 11 STGVLIVPCMLTLAIPG-VLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAFPLPALIWC 69 S+G+ L+ L R + AL V A G A LAF + L Sbjct: 269 SSGLAFATNFLSTKRRQPRLHRTFQTIGVAYFALFVVCFALGEQGLALRLAFLVAPLFSV 328 Query: 70 AVRYTPQVTCLLT------FVTGAVEIVLVANSVID-ISVGSPFSIPQMFSARLGIAT-M 121 + Y + + F+ G + V+ A+ ++ P++ ++ +G+ Sbjct: 329 LMLYMGASSWVAGNQFARYFMLGTLASVVGASITASTVTGMIPYTQLGYYAVDIGMIVDA 388 Query: 122 AICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLY---EALKSPSLKQTQHLTVM 178 + + ++ V A D LT + +R G E+L S ++ +++ V Sbjct: 389 ILLMLALADLVRKNEEARTAAEQNAQTDLLTGLSNRRGFLPVAESLWSLVTRKNRNVCVA 448 Query: 179 LLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDG 238 ++DID FK+IND YGH GDKVL V A + + L+AR GGEEF + +P + + Sbjct: 449 MIDIDRFKNINDQYGHAVGDKVLKVIADELYRSRRRGDLLARWGGEEFTLLLPETSEAEA 508 Query: 239 LLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSK 298 L +AE+ R +E + + + T+SIGV S + ++ ++ + AD LYR+K Sbjct: 509 LKVAERFRHNIEQLVTNDRGRVIQCTISIGVTSRHSEHV----TLDQAIARADEELYRAK 564 Query: 299 KDGRNRTS 306 GRN+ S Sbjct: 565 LQGRNQVS 572 >UniRef50_A8UWP4 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWP4_9AQUI Length = 425 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 25/326 (7%) Query: 10 FSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGG-------AGSLAFP 62 F ++ LT I ++ I + V +I G G + Sbjct: 99 FVIPFGVLFLFLTFKIQNERLIEFLHSLLVLIGGLGIVAMIYLISGDKYYLYYPGLMLVI 158 Query: 63 LPALIWCAVRYTPQVTCLLTFVTGAVEIVLVA---------NSVIDISVGSPFSIPQMFS 113 A A+R+ +L + + L ++ ++ + +P + Sbjct: 159 FYAFTLSALRFYYATASVLALLLTYPVVDLYLLKTPEELHITNMFFLTSSALLGMPVSYL 218 Query: 114 ARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQ-- 171 + ++++F + L ++ + D LT V +R + + + Sbjct: 219 LERHARKDFLLTMLLAFEKRKTDELNVRLRDISFIDGLTGVANRLRFDDFFRKEWRRARR 278 Query: 172 -TQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVG-DKGLVARMGGEEFAVA 229 + +++++LDID+FK+ ND GH GD+ L A+ IQ + D LVAR GGEEF V Sbjct: 279 TKRPISILMLDIDFFKNYNDLLGHLEGDECLKNVAKTIQSHIRADVDLVARYGGEEFVVV 338 Query: 230 VPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLY--LTVSIGVGSGRASYLTLTDDFNKLM 287 +P + L +AE+IR+ +E + +TVSIGV S L+ Sbjct: 339 LPETDLKGALKVAERIRRDIEGLKIAHPGSQVSKFVTVSIGVASIVPIDNLKK---EVLL 395 Query: 288 VEADTCLYRSKKDGRNRTSTMRYGEE 313 AD LY +KK GRNR E Sbjct: 396 NMADKALYVAKKRGRNRVEAYSIEME 421 >UniRef50_Q2IZF7 Diguanylate cyclase n=5 Tax=Rhodopseudomonas palustris RepID=Q2IZF7_RHOP2 Length = 753 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 12/187 (6%) Query: 133 AAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPS---LKQTQHLTVMLLDIDYFKSIN 189 + + +A +A D LT +++R E L + Q L++++ D+D+FK +N Sbjct: 552 SELQERAAALARQATTDPLTGLHNRLRFNEGLAQELARVRRTGQPLSLVMFDVDHFKEVN 611 Query: 190 DNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGV 249 D YGH GD+VL ++ + L+AR GGEEFA+ + + + +AE +R+ V Sbjct: 612 DRYGHPTGDQVLIRLSQTAAAQLRQTDLLARWGGEEFAILLVDADLHAAVEVAENLRRLV 671 Query: 250 ELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTST-M 308 PF + +T S GV R + + L+ AD LYR+K +GRNR Sbjct: 672 ARTPF---DQIGSVTASFGVAECRP-----DESADSLLERADAALYRAKSNGRNRVEIDA 723 Query: 309 RYGEEVV 315 EE V Sbjct: 724 PVIEETV 730 >UniRef50_C1F5G2 GAF domain/GGDEF domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5G2_ACIC5 Length = 369 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 12/225 (5%) Query: 93 VANSVIDISVGSPFSIP-QMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFL 151 VA V+ V + F + Q+ R A A + S + + D L Sbjct: 144 VALRVLARQVAAQFQMRRQLLELREARAKQAKTEQRLRESQTRLKEANACLQEMVTTDAL 203 Query: 152 TQVYSRSGLYEALKSPSL---KQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHI 208 T V +R E L+ + L+++++D+D+FK +ND GHE GD VL + A+ + Sbjct: 204 TGVKNRRAFDEGLQQAWKMSARTKSPLSLLMVDVDHFKRVNDTLGHEAGDDVLRLVAQTL 263 Query: 209 QKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIG 268 Q + +VAR GGEEF V +P + AE++R + +W+ L TVSIG Sbjct: 264 QFMTRSTDMVARYGGEEFVVVLPGTEAEPAVAFAEQLRLNIAN--LSWRGHPL--TVSIG 319 Query: 269 VGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEE 313 V SG S T + L+ AD LYR+K GRNR ++ Sbjct: 320 VDSGSGSGKTECE----LVAHADAALYRAKNSGRNRVLRFDPEKD 360 >UniRef50_Q2SPL3 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPL3_HAHCH Length = 373 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 10/224 (4%) Query: 97 VIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVA--AINSLMKQVALRADFDFLTQV 154 V S + M A++ + I + S V +N ++++++ A D LT + Sbjct: 153 VTPNSEFVLLTALFMVMAQMALIGGFISKLRASLRVKNHQLNEALEKISVMASTDELTGL 212 Query: 155 YSRSGLYEALKSPSLKQTQH---LTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKI 211 +R L + L + + + L++ LLDID+FK IND+YGH+ GD VL A+ +Q + Sbjct: 213 CTRRELMKQLSNEFSRCRRSSGALSLCLLDIDHFKRINDSYGHQAGDAVLKKVAQTMQSL 272 Query: 212 VGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGS 271 V + R GGEEF + +P + AE++R+ V PF +T+S+G Sbjct: 273 VRSIDCLGRYGGEEFLLILPQTPLDGAFITAERLRRAVMDIPFPEVAPEFRVTISLGAAE 332 Query: 272 GRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 315 + L+ D LY +K GRNR + + + Sbjct: 333 L-----EEGEAMETLISRVDKALYAAKGAGRNRVVSAEQTADTL 371 >UniRef50_C6CQG0 Diguanylate cyclase n=7 Tax=Enterobacteriaceae RepID=C6CQG0_DICZE Length = 491 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 15/239 (6%) Query: 74 TPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVA 133 + + G +V ++ D + S S + +A + + + + Sbjct: 265 NIFLNTRIIPEFGWKLMVEQNSTPHDRQLWSTLLKNTGISITVSVAMLLLIWLTIG---- 320 Query: 134 AINSLMKQVALRADFDFLTQVYSRSGL---YEALKSPSLKQTQHLTVMLLDIDYFKSIND 190 + +++ L A D LT + +R + L+ Q + +++L+D+DYFK IND Sbjct: 321 ---AYQRRLELMATTDKLTGLMNRQAFEYVFRTLRIKQSTQHRTFSIILIDLDYFKKIND 377 Query: 191 NYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVE 250 YGH GD+VL AR IQ+ + R GGEEF + + + +AEKIR+ + Sbjct: 378 QYGHHVGDRVLVRTARLIQRTIRKTDSACRWGGEEFVLLLADCSRSQAHFIAEKIRRAIR 437 Query: 251 LQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMR 309 + Q + + LT+S G+ + + L+ AD LY++K+ GR++ Sbjct: 438 FALVSHQHQVINLTISCGIAESHP-----GESIDHLVQRADNALYQAKRQGRDQAVIAE 491 >UniRef50_B5JS67 Gaf/pas/ggdef domain protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS67_9GAMM Length = 488 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 96/227 (42%), Gaps = 12/227 (5%) Query: 91 VLVANSVIDISVGSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDF 150 V SV I S S I + + ++A A+ D Sbjct: 266 VWGRLSVALIRTPDQGSPQHFVSQVQDITQQVESSKALEQRQIELEEKNIELATLANTDP 325 Query: 151 LTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARH 207 LTQ+ +R E L + +Q Q L +LLD+D+FKS ND YGH GD+ L Sbjct: 326 LTQLATRRYFMERLSTAIAYCQRQQQPLAYVLLDVDHFKSFNDQYGHLAGDEALKRVGSI 385 Query: 208 IQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSI 267 ++ + L +R GGEEFA+ +PS + L +AE++R +E +T S+ Sbjct: 386 LKHSPREYDLASRYGGEEFALYLPSTTAQEALQVAERLRTAIEE----ISDLDRPITASL 441 Query: 268 GVGSGRASYLTLTDD-----FNKLMVEADTCLYRSKKDGRNRTSTMR 309 GV + D L+ ADT LY++K GRNRT Sbjct: 442 GVALLDPASALPPDSDMKTVIEALIQRADTALYQAKSQGRNRTLLSE 488 >UniRef50_A8UY33 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UY33_9AQUI Length = 345 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 7/179 (3%) Query: 131 SVAAINSLMKQVALRADFDFLTQVYSRSGLYEALK---SPSLKQTQHLTVMLLDIDYFKS 187 + + +++V A+ D LT + +R AL K +V+++D+D FK Sbjct: 170 EIERLREELRRVKEEANIDPLTGLRNRRSFERALSEFFRDFKKFGYPFSVIMIDLDNFKQ 229 Query: 188 INDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNPVDGLLMAEKIRK 247 IND YGH GDKVL ++ + K + AR GGEEF + +P + + L++AE++RK Sbjct: 230 INDTYGHLAGDKVLKEIGNILRNYLRAKDVPARTGGEEFTIILPGITREEALMVAERLRK 289 Query: 248 GVELQPFTWQQKTLYLTVSIGVGSGRASYLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 306 + + K + T S GV + L+ AD LY++K+ G+N Sbjct: 290 VIANYTVEHEDKKINPTASFGVAEVNEQV----ETPEDLLRLADENLYKAKRRGKNTVV 344 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.167 0.590 Lambda K H 0.267 0.0509 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,163,171,870 Number of Sequences: 3077464 Number of extensions: 126825695 Number of successful extensions: 524318 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 23243 Number of HSP's successfully gapped in prelim test: 2382 Number of HSP's that attempted gapping in prelim test: 445980 Number of HSP's gapped (non-prelim): 29335 length of query: 315 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 187 effective length of database: 646,480,964 effective search space: 120891940268 effective search space used: 120891940268 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.8 bits) S2: 94 (40.5 bits)