71 d2hoxa1 Probab=100.00  E-value=2.6e-43  Score=297.88  Aligned_columns=376  Identities=14%

Q ss_pred             HHHHHHHHHCCEEEEECCCCEE-------ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             9999999846609987787249-------788865455444333211254333104566642100146654774346765
Q batch____        44 QQAYQTLETMKLITPQPRSGYF-------VAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEAHSDSSIVPLSKSTPDV  116 (470)
Q Consensus        44 ~~Ay~~L~~~G~i~~~~g~Gtf-------V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~  116 (470)
                      .+|++++++   |.+...||+-       |.+..+.-.+........              .........++++.|.|..
T Consensus         6 ~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gp~--------------~~~~~~~~~~~~~~gdp~~   68 (425)
T d2hoxa1           6 MKAAEEAEA---VANINCSEHGRAFLDGIISEGSPKCECNTCYTGPD--------------CSEKIQGCSADVASGDGLF   68 (425)
T ss_dssp             HHHHHHHHH---HHTSCCGGGEECCTTSCEETTEECCEECTTEESTT--------------SCEECTTCCEECCSCCCGG
T ss_pred             HHHHHHHHC---EEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCCCC
T ss_conf             888742210---25320267324320221126765002467555875--------------2001365543466788554


Q ss_pred             CCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHCCCCCCCCCHHH-HHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             45880388897400222344444224670--0272000000000000122012143-30156026899999998267798
Q batch____       117 EAPSLKPLWRELSRVVQHNLQTVLGYDLL--AGQRVLREQIARLMLDSGSVVTADD-IIITSGCHNSMSLALMAVCKPGD  193 (470)
Q Consensus       117 ~~~p~~~~~~~~~~~~~~~~~~~~~y~~~--~G~~~lr~~~a~~~~~~~~~~~~~~-i~it~G~~~al~~~~~~l~~~gd  193 (470)
                      ..+....-...............+.|.+.  .+.+.|++.+++.....|..+..++ |++|+|++++|.+++.+|++|||
T Consensus        69 ~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd  148 (425)
T d2hoxa1          69 LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMT  148 (425)
T ss_dssp             GHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTT
T ss_pred             CHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf             63664114210001124555456545664344528999999999885088678877699946889999999998648886


Q ss_pred             E--------EEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             9--------99809851899999985177089973537668783255752122556289994489865575089999999
Q batch____       194 I--------VAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWPIKGIILVPNCNNPLGFIMPDARKRA  265 (470)
Q Consensus       194 ~--------Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~d~~~l~~~~~~~~~~~v~~~p~~~NPTG~~~s~~~~~~  265 (470)
                      .        |++..|+|+.+...++..|.++..++      +|.+.++......+  .+++++|||||||.+++      
T Consensus       149 ~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~--~~~~i~~P~NPtG~v~~------  214 (425)
T d2hoxa1         149 ATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA------GNAANYVNVSNPEQ--YIEMVTSPNNPEGLLRH------  214 (425)
T ss_dssp             TCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEE------EEGGGGTTCSCGGG--EEEEEESSCTTTCCCCC------
T ss_pred             CCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCC------CCHHHHHHHCCCCC--EEEEECCCCCCCCEEEE------
T ss_conf             12356774357300237789999985599744424------79889997248885--79998178888560654------


Q ss_pred             HHHHHHHCCCCEEEEECHHHHCCCCCCCCCHHHHCCCCCEEECCCCCCCCC-CCCEEEEEECC--HHHHHHHHHHHCCCC
Q ss_conf             999998618965987230220268878660353046883897065643257-55303688652--699999987402577
Q batch____       266 VLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWDIDGRVLLCSSFSKSIA-PGLRVGWVAPG--RYHDKLMHMKYAISS  342 (470)
Q Consensus       266 l~~~a~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~sk~~~-~g~r~g~i~~~--~~~~~~~~~~~~~~~  342 (470)
                          |.++++++|+||+|.++.+.+.+...       +++|+++|+||.++ +|+|+||+..+  ++.+++.+.+....+
T Consensus       215 ----a~~~~~~~i~De~y~~~~~~~~~~~~-------~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~  283 (425)
T d2hoxa1         215 ----AVIKGCKSIYDMVYYWPHYTPIKYKA-------DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTE  283 (425)
T ss_dssp             ----CSSTTCEEEEECTTCSTTTSCCCSCB-------CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTS
T ss_pred             ----EEECCCEEEEECCCCCCCCCCCCCCC-------CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCC
T ss_conf             ----23239689971432343323333456-------8549998155101233231018996898999999986410577


Q ss_pred             CCCHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCCCEEECCCCCEE
Q ss_conf             7798999999999809---------8968999999999999999999999874------------569809953786139
Q batch____       343 FNVPSTQMAAATFVLE---------GHYHRHIRRMRQIYQRNLALYTCWIREY------------FPCEICITRPKGGFL  401 (470)
Q Consensus       343 ~~~~~~q~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~~------------~~~~~~~~~p~gg~~  401 (470)
                      +++.+.|.++..++.+         ....++++..++.+++|++.+.+.|.+.            .-..+....|++++|
T Consensus       284 ~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f  363 (425)
T d2hoxa1         284 GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSY  363 (425)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSE
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             73689999999996020134565555489999999999999999999998635763003456554322100137787616


Q ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEECHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             99988988898999999996894999473426788778769998218998999999999999999
Q batch____       402 LWIELPEQVDMVCVARQLCRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGEAVY  466 (470)
Q Consensus       402 i~~~l~~~~~~~~l~~~l~~~gv~v~pg~~f~~~~~~~~~iRis~~~~~~e~l~~ai~~L~~~l~  466 (470)
                      +|++++.. +.+.+.+.|.++||.++||+.|   +..++|+|||++. ++|++++++++|++.++
T Consensus       364 ~w~~~~~~-~~~~~~~lL~e~GI~v~pGs~F---G~~~~~vRiSl~~-~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         364 AWVKCEWE-EDKDCYQTFQNGRINTQNGVGF---EASSRYVRLSLIK-TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             EEEEECSG-GGCSHHHHHHHTTEECEEGGGG---TSCTTEEEEECSS-CHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCC-CHHHHHHHHHHCCEEEECCCCC---CCCCCEEEEEECC-CHHHHHHHHHHHHHHHH
T ss_conf             99867898-0899999999669499717023---8988659999139-98999999999999872


