BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (107 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9EUE4 Anti-adapter protein iraM n=31 Tax=root RepID=IR... 159 3e-38 UniRef50_Q9F0N8 Anti-adapter protein iraM n=10 Tax=Enterobacteri... 101 7e-21 UniRef50_A8AKK2 Anti-adapter protein iraM n=1 Tax=Citrobacter ko... 79 4e-14 UniRef50_UPI0001C34209 hypothetical protein EcanA3_04157 n=1 Tax... 78 9e-14 UniRef50_B5XXW1 Anti-adapter protein iraM n=3 Tax=Klebsiella Rep... 68 1e-10 UniRef50_D2TM82 Putative anti-adapter protein IraM n=1 Tax=Citro... 63 3e-09 UniRef50_A7MGG4 Anti-adapter protein iraM n=2 Tax=Cronobacter Re... 52 7e-06 UniRef50_UPI00018264C7 hypothetical protein EcanA3_11966 n=1 Tax... 45 7e-04 >UniRef50_Q9EUE4 Anti-adapter protein iraM n=31 Tax=root RepID=IRAM_ECOLX Length = 107 Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 70/107 (65%), Positives = 89/107 (83%) Query: 1 MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPIT 60 M WIVIDTVIQP C ISFSAIW N+K+I+WYQS IFLPPG IFTP ++G+IL +KE P+T Sbjct: 1 MNWIVIDTVIQPACDISFSAIWCNIKLILWYQSDIFLPPGCIFTPTRTGVILNNKELPVT 60 Query: 61 IYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK 107 IY++ PFNK++W+L+KSSQECP IT+KC ++ CI++ICPYG K Sbjct: 61 IYNVTPFNKNVWNLIKSSQECPANTGNITDKCFNHRCILEICPYGRK 107 >UniRef50_Q9F0N8 Anti-adapter protein iraM n=10 Tax=Enterobacteriaceae RepID=IRAM_SALTY Length = 120 Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 3/109 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M+W V+DTVI P+ G+SFS I N+++ +WYQ+ +++PPGSI P G+++ DK YP Sbjct: 1 MEWKVVDTVISPSTGVSFSCIHSLKNLRLTLWYQADVYMPPGSIIIPFNKGVLINDKLYP 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHN-SCIIKICPYGL 106 +T+Y++ FN LW LK + CP + + C + C++ +CP+GL Sbjct: 61 VTVYNVTRFNPVLWKSLKENSHCPGNCNPKSEACSYPFECLVSVCPFGL 109 >UniRef50_A8AKK2 Anti-adapter protein iraM n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=IRAM_CITK8 Length = 114 Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M+W V + ++ PT G +F+ G N+K I+WY+ FL GS+ +P SG++ K+ Sbjct: 1 MEWSVENNLVCPTTGTAFALTSGAENLKFILWYKGDYFLRTGSVISPEDSGVLANGKKRN 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCL-HNSCIIKICPYGLK 107 I I H+ P++ LW+ + +CP N C C+ +CPYG + Sbjct: 61 IKILHVFPYSNALWASFHNRIDCPGNGVVTINHCARQQQCVFTLCPYGAR 110 >UniRef50_UPI0001C34209 hypothetical protein EcanA3_04157 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C34209 Length = 123 Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 3/109 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M W VI ++I P GI +S+I G +K+IIWY+S ++L PG P K G+ + P Sbjct: 1 MSWRVISSIICPNTGIVYSSILGLKFLKLIIWYESDVYLYPGDRIYPTKKGVFINGIYSP 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHN-SCIIKICPYGL 106 I++Y+++P+N+ LW+ +K+ CP +++ C + C + CP+G Sbjct: 61 ISLYNVSPYNEMLWNEIKNKMACPFNKNQHEEICSYAMHCNARKCPHGF 109 >UniRef50_B5XXW1 Anti-adapter protein iraM n=3 Tax=Klebsiella RepID=IRAM_KLEP3 Length = 117 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 1 MKWIVIDTVIQPTCGISFSAI--WGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 MKW +++T+I P GI+FSAI +K I+WY++ + L PG S +++ D+ + Sbjct: 1 MKWTILNTLICPQSGIAFSAISSLRFLKFIMWYEADVILLPGESMKLYSSRVLINDQYHS 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECP-PGESKITNKCLHNS-CIIKICP 103 + IY+I +++ W L+ CP K ++ C S C IK CP Sbjct: 61 LKIYNITVYDEAQWEKLRERPSCPYQAGGKQSDSCFFQSFCAIKRCP 107 >UniRef50_D2TM82 Putative anti-adapter protein IraM n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TM82_CITRO Length = 115 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M+WI+ +++ P G FS N+K+IIWY FL G++ K + + K Sbjct: 1 MEWIIEKSLVCPVTGTGFSLAVAAKNLKLIIWYTGEYFLRTGTVIHISKKVVTVNGKPVF 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLH-NSCIIKICPYG 105 + I HI P+ K+LW L CP + + C +C +CPYG Sbjct: 61 VNILHIFPYTKELWQTLAQRILCPGNTNPLLQICNQMKTCKFTLCPYG 108 >UniRef50_A7MGG4 Anti-adapter protein iraM n=2 Tax=Cronobacter RepID=IRAM_ENTS8 Length = 111 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M W V+D+V+ F+ I + K+I+WY++T +L G + + I + + Sbjct: 1 MNWRVVDSVVSTDTNSVFTLISSQQSFKLILWYKATFYLSSGDTLSINGASITVNNHPVE 60 Query: 59 ITIYHIAPFNKDLW-SLLKSSQECPPGESKITNKC-LHNSCIIKICPY 104 +T+Y +N W +++ S+ C + +C C + CP+ Sbjct: 61 LTLYRTTVYNARFWQTIVNSNTHCAGNHRQSVGRCGYRRKCKLLYCPF 108 >UniRef50_UPI00018264C7 hypothetical protein EcanA3_11966 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI00018264C7 Length = 158 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%) Query: 3 WIVIDTVIQPTCGISFSAI--WGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPIT 60 WI + +++ P G F+ I N K ++WY+ + G + SG ++ D+ I Sbjct: 46 WISLGSIVSPITGTFFTTIITQHNHKYVLWYKGDYLIKTGDLIKVCNSGFLIADQLRQIN 105 Query: 61 IYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNS-CIIKICPYG 105 I I + LW ++++ CP C + CI CP+G Sbjct: 106 IIQIDKHSATLWRVMQNMSSCPGDTEPENMHCTSTARCIFTTCPHG 151 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9EUE4 Anti-adapter protein iraM n=31 Tax=root RepID=IR... 140 2e-32 UniRef50_A8AKK2 Anti-adapter protein iraM n=1 Tax=Citrobacter ko... 137 7e-32 UniRef50_Q9F0N8 Anti-adapter protein iraM n=10 Tax=Enterobacteri... 135 5e-31 UniRef50_UPI0001C34209 hypothetical protein EcanA3_04157 n=1 Tax... 129 3e-29 UniRef50_D2TM82 Putative anti-adapter protein IraM n=1 Tax=Citro... 127 8e-29 UniRef50_B5XXW1 Anti-adapter protein iraM n=3 Tax=Klebsiella Rep... 118 7e-26 UniRef50_A7MGG4 Anti-adapter protein iraM n=2 Tax=Cronobacter Re... 112 3e-24 UniRef50_UPI00018264C7 hypothetical protein EcanA3_11966 n=1 Tax... 110 1e-23 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q9EUE4 Anti-adapter protein iraM n=31 Tax=root RepID=IRAM_ECOLX Length = 107 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 70/107 (65%), Positives = 89/107 (83%) Query: 1 MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPIT 60 M WIVIDTVIQP C ISFSAIW N+K+I+WYQS IFLPPG IFTP ++G+IL +KE P+T Sbjct: 1 MNWIVIDTVIQPACDISFSAIWCNIKLILWYQSDIFLPPGCIFTPTRTGVILNNKELPVT 60 Query: 61 IYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKICPYGLK 107 IY++ PFNK++W+L+KSSQECP IT+KC ++ CI++ICPYG K Sbjct: 61 IYNVTPFNKNVWNLIKSSQECPANTGNITDKCFNHRCILEICPYGRK 107 >UniRef50_A8AKK2 Anti-adapter protein iraM n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=IRAM_CITK8 Length = 114 Score = 137 bits (346), Expect = 7e-32, Method: Composition-based stats. Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M+W V + ++ PT G +F+ G N+K I+WY+ FL GS+ +P SG++ K+ Sbjct: 1 MEWSVENNLVCPTTGTAFALTSGAENLKFILWYKGDYFLRTGSVISPEDSGVLANGKKRN 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCL-HNSCIIKICPYGLK 107 I I H+ P++ LW+ + +CP N C C+ +CPYG + Sbjct: 61 IKILHVFPYSNALWASFHNRIDCPGNGVVTINHCARQQQCVFTLCPYGAR 110 >UniRef50_Q9F0N8 Anti-adapter protein iraM n=10 Tax=Enterobacteriaceae RepID=IRAM_SALTY Length = 120 Score = 135 bits (339), Expect = 5e-31, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 3/109 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M+W V+DTVI P+ G+SFS I N+++ +WYQ+ +++PPGSI P G+++ DK YP Sbjct: 1 MEWKVVDTVISPSTGVSFSCIHSLKNLRLTLWYQADVYMPPGSIIIPFNKGVLINDKLYP 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHN-SCIIKICPYGL 106 +T+Y++ FN LW LK + CP + + C + C++ +CP+GL Sbjct: 61 VTVYNVTRFNPVLWKSLKENSHCPGNCNPKSEACSYPFECLVSVCPFGL 109 >UniRef50_UPI0001C34209 hypothetical protein EcanA3_04157 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C34209 Length = 123 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 3/109 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M W VI ++I P GI +S+I G +K+IIWY+S ++L PG P K G+ + P Sbjct: 1 MSWRVISSIICPNTGIVYSSILGLKFLKLIIWYESDVYLYPGDRIYPTKKGVFINGIYSP 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHN-SCIIKICPYGL 106 I++Y+++P+N+ LW+ +K+ CP +++ C + C + CP+G Sbjct: 61 ISLYNVSPYNEMLWNEIKNKMACPFNKNQHEEICSYAMHCNARKCPHGF 109 >UniRef50_D2TM82 Putative anti-adapter protein IraM n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TM82_CITRO Length = 115 Score = 127 bits (320), Expect = 8e-29, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M+WI+ +++ P G FS N+K+IIWY FL G++ K + + K Sbjct: 1 MEWIIEKSLVCPVTGTGFSLAVAAKNLKLIIWYTGEYFLRTGTVIHISKKVVTVNGKPVF 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLH-NSCIIKICPYGL 106 + I HI P+ K+LW L CP + + C +C +CPYG Sbjct: 61 VNILHIFPYTKELWQTLAQRILCPGNTNPLLQICNQMKTCKFTLCPYGA 109 >UniRef50_B5XXW1 Anti-adapter protein iraM n=3 Tax=Klebsiella RepID=IRAM_KLEP3 Length = 117 Score = 118 bits (295), Expect = 7e-26, Method: Composition-based stats. Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 4/107 (3%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 MKW +++T+I P GI+FSAI +K I+WY++ + L PG S +++ D+ + Sbjct: 1 MKWTILNTLICPQSGIAFSAISSLRFLKFIMWYEADVILLPGESMKLYSSRVLINDQYHS 60 Query: 59 ITIYHIAPFNKDLWSLLKSSQECP-PGESKITNKCLHNS-CIIKICP 103 + IY+I +++ W L+ CP K ++ C S C IK CP Sbjct: 61 LKIYNITVYDEAQWEKLRERPSCPYQAGGKQSDSCFFQSFCAIKRCP 107 >UniRef50_A7MGG4 Anti-adapter protein iraM n=2 Tax=Cronobacter RepID=IRAM_ENTS8 Length = 111 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 1 MKWIVIDTVIQPTCGISFSAIWG--NMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYP 58 M W V+D+V+ F+ I + K+I+WY++T +L G + + I + + Sbjct: 1 MNWRVVDSVVSTDTNSVFTLISSQQSFKLILWYKATFYLSSGDTLSINGASITVNNHPVE 60 Query: 59 ITIYHIAPFNKDLWSLL-KSSQECPPGESKITNKC-LHNSCIIKICPY 104 +T+Y +N W + S+ C + +C C + CP+ Sbjct: 61 LTLYRTTVYNARFWQTIVNSNTHCAGNHRQSVGRCGYRRKCKLLYCPF 108 >UniRef50_UPI00018264C7 hypothetical protein EcanA3_11966 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI00018264C7 Length = 158 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 3/107 (2%) Query: 2 KWIVIDTVIQPTCGISFSAI--WGNMKMIIWYQSTIFLPPGSIFTPVKSGIILKDKEYPI 59 WI + +++ P G F+ I N K ++WY+ + G + SG ++ D+ I Sbjct: 45 NWISLGSIVSPITGTFFTTIITQHNHKYVLWYKGDYLIKTGDLIKVCNSGFLIADQLRQI 104 Query: 60 TIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHN-SCIIKICPYG 105 I I + LW ++++ CP C CI CP+G Sbjct: 105 NIIQIDKHSATLWRVMQNMSSCPGDTEPENMHCTSTARCIFTTCPHG 151 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.321 0.140 0.455 Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 496,232,566 Number of Sequences: 3077464 Number of extensions: 17619634 Number of successful extensions: 41199 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 15 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 41165 Number of HSP's gapped (non-prelim): 16 length of query: 107 length of database: 1,040,396,356 effective HSP length: 75 effective length of query: 32 effective length of database: 809,586,556 effective search space: 25906769792 effective search space used: 25906769792 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits)