BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (133 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enter...   209   2e-53
UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Provide...   209   3e-53
UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Ta...   204   1e-51
UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=P...   203   1e-51
UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=A...   197   1e-49
UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteria...   191   5e-48
UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=A...   181   6e-45
UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio...   178   6e-44
UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrio...   172   3e-42
UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photoba...   170   1e-41
UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia ...   170   2e-41
UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 T...   165   3e-40
UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromon...   156   2e-37
UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio ori...   127   1e-28
UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio met...    78   1e-13

>UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enterobacteriaceae
           RepID=CRL_ENT38
          Length = 133

 Score =  209 bits (533), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/133 (75%), Positives = 115/133 (86%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           MTLPSGHPKSRLIKKF ALGPYIRE +C++NRFFFDCLAVCVNV+PAPE REFWGWWME+
Sbjct: 1   MTLPSGHPKSRLIKKFMALGPYIREEQCEENRFFFDCLAVCVNVQPAPEEREFWGWWMEM 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
           EA+E RFTY+Y FGLF+KAG W++  +KD EVVERLE TLR FHEK R LL T  LKLEP
Sbjct: 61  EAEEKRFTYTYHFGLFNKAGHWQATTIKDKEVVERLEQTLRGFHEKARALLETFELKLEP 120

Query: 121 ADDFRDEPVKLTA 133
           ADDF +E +KL+A
Sbjct: 121 ADDFTNEKLKLSA 133


>UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Providencia
           RepID=B2PU02_PROST
          Length = 133

 Score =  209 bits (531), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/133 (45%), Positives = 83/133 (62%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M LP+ +   + +KKF+ALGPY+RE +C D  +FFD L VCVNV  APE REFWGWWM L
Sbjct: 1   MALPTDYSNGKYLKKFSALGPYLREKQCLDGCYFFDSLTVCVNVNSAPERREFWGWWMLL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
              E  F YSY  GL++  G W+  P+KD   ++ +E  L  FH+ L + L+ L L L P
Sbjct: 61  SPNEDGFEYSYHLGLYNVHGTWQDKPLKDNATLDIIEQNLISFHQSLSKQLSELELSLFP 120

Query: 121 ADDFRDEPVKLTA 133
           +    +  ++L+A
Sbjct: 121 SAKMAEFKLELSA 133


>UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Tax=Providencia
           RepID=D1P5V3_9ENTR
          Length = 146

 Score =  204 bits (518), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 83/133 (62%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M LP+ +   + +KKF A+GPY+RE +   + +FFD L VCVN   APE REFWGWW+EL
Sbjct: 14  MALPTDYSNGKYLKKFAAIGPYLREKQSLKDCYFFDSLVVCVNANIAPEKREFWGWWLEL 73

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
            +    F ++Y  G++D  G+W++  +K++E  + +E  L  FH+ L + L+ L L L P
Sbjct: 74  VSTHEGFEFAYHLGMYDNQGNWQAKTLKNSETTKAVEKNLVSFHKSLSQRLSELELTLYP 133

Query: 121 ADDFRDEPVKLTA 133
           +    +  ++L+A
Sbjct: 134 SPLMTELKLELSA 146


>UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=Proteus
           RepID=B4EUU9_PROMH
          Length = 133

 Score =  203 bits (517), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 84/131 (64%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           MT      + +L+K+F  +GPYIRE +C++++FFFDCLAVCVN K  PE REFWGWWMEL
Sbjct: 1   MTSSLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWGWWMEL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
           E    +  Y YQ GLFDK GDW +  +   +V+E +  TL  FH+ L+  ++ L + L P
Sbjct: 61  ERNGEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVP 120

Query: 121 ADDFRDEPVKL 131
            +   + P+ L
Sbjct: 121 DEKMSNFPLPL 131


>UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=Arsenophonus
           nasoniae RepID=D2U044_9ENTR
          Length = 129

 Score =  197 bits (500), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 64/124 (51%), Positives = 88/124 (70%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M L S + KS+L+K FT LGPY+RE  C+D+ FFFDCLA+CVN K APE REFWGWW+EL
Sbjct: 1   MALTSNYSKSKLLKHFTRLGPYLRESLCQDDLFFFDCLAICVNAKTAPEKREFWGWWLEL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
             + + F Y Y+ G+FDKAG+W+ + +  + +++ LE TL+EFH++L + L TL L L P
Sbjct: 61  RGELNGFVYHYKLGMFDKAGNWQHIEINKSNIIKSLEDTLQEFHKRLSDSLNTLELTLTP 120

Query: 121 ADDF 124
               
Sbjct: 121 CPKM 124


>UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteriaceae
           RepID=C4K336_HAMD5
          Length = 137

 Score =  191 bits (486), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 56/128 (43%), Positives = 87/128 (67%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M L + HPK +L+K F ALGPY+RE +C+ + FFFDCLA+CV++K APE R+FWGWW+EL
Sbjct: 1   MPLINAHPKCKLMKCFAALGPYLRESQCQKDYFFFDCLAICVDIKLAPEKRQFWGWWLEL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
             ++  F Y+YQFGL+ +   W    +K  ++ ++LE T  +F+E+L E+L +++ +L  
Sbjct: 61  RPEDKCFIYTYQFGLYTQDEQWMVKKIKAADIQQKLETTFIDFYERLNEMLASIDCELRL 120

Query: 121 ADDFRDEP 128
             +    P
Sbjct: 121 ESNINVLP 128


>UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=Aeromonas
           RepID=A4SJF4_AERS4
          Length = 130

 Score =  181 bits (460), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 8   PKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRF 67
              RL+++F A+GPY+RE  C++ R+ FDCL+VCV+ KPAP+ REFWGWW+ LE Q+  F
Sbjct: 6   TYKRLLRQFAAIGPYLREDLCEEGRYRFDCLSVCVSAKPAPDKREFWGWWLVLEQQDRSF 65

Query: 68  TYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDE 127
           +Y YQ G ++  G+W + P+      E +E TL  F++ + + LT L  +L PA+   +E
Sbjct: 66  SYHYQVGFYNAEGEWINKPLPKKHQAE-VERTLNRFYKLISDKLTLLECQLAPAEQVTNE 124


>UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio RepID=CRL_VIBVY
          Length = 129

 Score =  178 bits (451), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 2/126 (1%)

Query: 3   LPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEA 62
           + +    +RL+ K  A+GPY+R+ + K+  ++FDCL+VC++ + +PE+REFWGWWMELEA
Sbjct: 4   VTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEA 63

Query: 63  QESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPA 121
            E  FT +Y  G +D  G+W  + +     +E +  T   FH KL + L     L +   
Sbjct: 64  TEGGFTANYHIGKYDVEGNWLDLAIP-KNALEEVNKTQNCFHLKLVKTLEENFQLSVAYH 122

Query: 122 DDFRDE 127
           +   + 
Sbjct: 123 EQSVEF 128


>UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrionales
           RepID=CRL_VIBPA
          Length = 129

 Score =  172 bits (437), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 2/116 (1%)

Query: 4   PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63
             G    RL+ K  A+GPY+RE + ++ R++FDCL+VCV+ K +PE REFWGWWM+LE+ 
Sbjct: 5   TQGPTHFRLMSKLKAIGPYLREPQSQEGRYYFDCLSVCVDDKKSPEKREFWGWWMDLESI 64

Query: 64  ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLE 119
           E  FT  Y  G ++K G W S  +    VVE +  T   FH+KL + L   + KLE
Sbjct: 65  EGGFTAKYHIGKYNKEGKWVSEALPQK-VVEEVYFTQSTFHQKLIDTLAE-HFKLE 118


>UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photobacterium
           RepID=CRL_PHOPR
          Length = 133

 Score =  170 bits (431), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 7   HPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESR 66
            P  RL+ K TALGPY+R+ + K+  FFFDCLA C++   +PE REFWGWW+ L A +  
Sbjct: 8   PPHGRLMTKLTALGPYLRKQQSKEGEFFFDCLASCISANKSPEEREFWGWWLVLTATDIG 67

Query: 67  FTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPAD 122
           F Y Y FG +D  G+W    +      E +  TL +F+ KL + +   + +L+   
Sbjct: 68  FEYRYDFGRYDAKGNWIKGTLPAKHT-EAVLKTLDDFYVKLTKFVKE-DCQLDLQA 121


>UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia hollisae CIP 101886
           RepID=D0I7J8_VIBHO
          Length = 150

 Score =  170 bits (430), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 4/121 (3%)

Query: 4   PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63
                  RL+ +F  LGPY+R+ KC ++R+FFDCL+ CVN K +P+ REFWGWWME+  +
Sbjct: 21  TKTLSHGRLLTRFAQLGPYLRQNKCTEDRYFFDCLSACVNAKKSPDSREFWGWWMEINPK 80

Query: 64  ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLT---TLNLKLEP 120
           E  F Y Y FG F+  G+WK V V +    E ++ +L  F+ K+ E +     L +  +P
Sbjct: 81  EGGFEYVYTFGKFNTEGEWKEVNVPNKSSDE-VKASLDAFYSKITEFVEGELILEITAKP 139

Query: 121 A 121
           +
Sbjct: 140 S 140


>UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 Tax=Moritella sp.
           PE36 RepID=A6FCA9_9GAMM
          Length = 136

 Score =  165 bits (419), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 11  RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70
           + I+   ALGPY+RE  C+   F+FDC +VC++    P+ REF+GWW+E+   +  F Y 
Sbjct: 14  KRIRILNALGPYLREHNCQPTSFYFDCFSVCIDANIEPDEREFYGWWLEMNLVDDTFEYQ 73

Query: 71  YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPADDFR 125
           YQFG ++KAG+W   P+    +   +  +L  F+EKL   LT  L+  L+P+    
Sbjct: 74  YQFGTYNKAGEWIITPIPKA-LQHDVTKSLNVFYEKLSVCLTEQLSFNLKPSSILA 128


>UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromonas
           RepID=A1SYU1_PSYIN
          Length = 130

 Score =  156 bits (394), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M +       R+ K  T LGPY R     ++ +FFDCL +CV+ +  PE REF GWWM +
Sbjct: 3   MDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIV 62

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL---TTLNLK 117
           + QE  F Y    G ++  G+W    +      ++L+++   F  +L  LL   T L L 
Sbjct: 63  KKQEDSFEYERFNGRYNLPGNWVDETIYKKN-QQQLDNSFELFLARLETLLEVETELPLN 121

Query: 118 LE 119
           L 
Sbjct: 122 LR 123


>UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio orientalis CIP 102891
           RepID=C9QMM2_VIBOR
          Length = 95

 Score =  127 bits (320), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 34  FFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVV 93
            FDCL+VCVN K +PE REFWGWW+ELE     F   Y+ GL+D  G+W+   +     +
Sbjct: 1   MFDCLSVCVNDKKSPEQREFWGWWLELEKNGEAFEARYRSGLYDVTGEWQDKALPKK-AI 59

Query: 94  ERLEHTLREFHEKLRELLT-TLNLKLEPADDFRDE 127
           + +  T   FH+KL E L     + L    +  + 
Sbjct: 60  QDVTRTQEVFHQKLLETLEKEFEIPLAIHKESVEF 94


>UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio metschnikovii CIP
           69.14 RepID=C9P2Z7_VIBME
          Length = 71

 Score = 77.7 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 58  MELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNL 116
           MEL   E+ F  +Y+ G ++ AG W          +  +  T  +FH+KL + L     L
Sbjct: 1   MELTTTETGFEANYRIGRYNLAGQW-EESKPTAAALPEVIRTQEDFHKKLAQTLQQRFEL 59

Query: 117 KLEPADDFRDE 127
            L       + 
Sbjct: 60  SLSLHQQSTEF 70


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Provide...   207   1e-52
UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enter...   207   1e-52
UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=P...   201   5e-51
UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Ta...   200   8e-51
UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=A...   195   5e-49
UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteria...   190   1e-47
UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio...   183   1e-45
UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=A...   181   7e-45
UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrio...   175   3e-43
UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photoba...   171   7e-42
UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia ...   171   8e-42
UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 T...   164   8e-40
UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromon...   155   6e-37
UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio ori...   130   1e-29
UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio met...    79   5e-14

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Providencia
           RepID=B2PU02_PROST
          Length = 133

 Score =  207 bits (526), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/133 (45%), Positives = 83/133 (62%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M LP+ +   + +KKF+ALGPY+RE +C D  +FFD L VCVNV  APE REFWGWWM L
Sbjct: 1   MALPTDYSNGKYLKKFSALGPYLREKQCLDGCYFFDSLTVCVNVNSAPERREFWGWWMLL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
              E  F YSY  GL++  G W+  P+KD   ++ +E  L  FH+ L + L+ L L L P
Sbjct: 61  SPNEDGFEYSYHLGLYNVHGTWQDKPLKDNATLDIIEQNLISFHQSLSKQLSELELSLFP 120

Query: 121 ADDFRDEPVKLTA 133
           +    +  ++L+A
Sbjct: 121 SAKMAEFKLELSA 133


>UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enterobacteriaceae
           RepID=CRL_ENT38
          Length = 133

 Score =  207 bits (526), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 101/133 (75%), Positives = 115/133 (86%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           MTLPSGHPKSRLIKKF ALGPYIRE +C++NRFFFDCLAVCVNV+PAPE REFWGWWME+
Sbjct: 1   MTLPSGHPKSRLIKKFMALGPYIREEQCEENRFFFDCLAVCVNVQPAPEEREFWGWWMEM 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
           EA+E RFTY+Y FGLF+KAG W++  +KD EVVERLE TLR FHEK R LL T  LKLEP
Sbjct: 61  EAEEKRFTYTYHFGLFNKAGHWQATTIKDKEVVERLEQTLRGFHEKARALLETFELKLEP 120

Query: 121 ADDFRDEPVKLTA 133
           ADDF +E +KL+A
Sbjct: 121 ADDFTNEKLKLSA 133


>UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=Proteus
           RepID=B4EUU9_PROMH
          Length = 133

 Score =  201 bits (512), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 60/131 (45%), Positives = 84/131 (64%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           MT      + +L+K+F  +GPYIRE +C++++FFFDCLAVCVN K  PE REFWGWWMEL
Sbjct: 1   MTSSLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWGWWMEL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
           E    +  Y YQ GLFDK GDW +  +   +V+E +  TL  FH+ L+  ++ L + L P
Sbjct: 61  ERNGEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVP 120

Query: 121 ADDFRDEPVKL 131
            +   + P+ L
Sbjct: 121 DEKMSNFPLPL 131


>UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Tax=Providencia
           RepID=D1P5V3_9ENTR
          Length = 146

 Score =  200 bits (510), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 83/133 (62%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M LP+ +   + +KKF A+GPY+RE +   + +FFD L VCVN   APE REFWGWW+EL
Sbjct: 14  MALPTDYSNGKYLKKFAAIGPYLREKQSLKDCYFFDSLVVCVNANIAPEKREFWGWWLEL 73

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
            +    F ++Y  G++D  G+W++  +K++E  + +E  L  FH+ L + L+ L L L P
Sbjct: 74  VSTHEGFEFAYHLGMYDNQGNWQAKTLKNSETTKAVEKNLVSFHKSLSQRLSELELTLYP 133

Query: 121 ADDFRDEPVKLTA 133
           +    +  ++L+A
Sbjct: 134 SPLMTELKLELSA 146


>UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=Arsenophonus
           nasoniae RepID=D2U044_9ENTR
          Length = 129

 Score =  195 bits (495), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 64/129 (49%), Positives = 89/129 (68%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M L S + KS+L+K FT LGPY+RE  C+D+ FFFDCLA+CVN K APE REFWGWW+EL
Sbjct: 1   MALTSNYSKSKLLKHFTRLGPYLRESLCQDDLFFFDCLAICVNAKTAPEKREFWGWWLEL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
             + + F Y Y+ G+FDKAG+W+ + +  + +++ LE TL+EFH++L + L TL L L P
Sbjct: 61  RGELNGFVYHYKLGMFDKAGNWQHIEINKSNIIKSLEDTLQEFHKRLSDSLNTLELTLTP 120

Query: 121 ADDFRDEPV 129
                   +
Sbjct: 121 CPKMVAINL 129


>UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteriaceae
           RepID=C4K336_HAMD5
          Length = 137

 Score =  190 bits (483), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 56/128 (43%), Positives = 87/128 (67%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M L + HPK +L+K F ALGPY+RE +C+ + FFFDCLA+CV++K APE R+FWGWW+EL
Sbjct: 1   MPLINAHPKCKLMKCFAALGPYLRESQCQKDYFFFDCLAICVDIKLAPEKRQFWGWWLEL 60

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120
             ++  F Y+YQFGL+ +   W    +K  ++ ++LE T  +F+E+L E+L +++ +L  
Sbjct: 61  RPEDKCFIYTYQFGLYTQDEQWMVKKIKAADIQQKLETTFIDFYERLNEMLASIDCELRL 120

Query: 121 ADDFRDEP 128
             +    P
Sbjct: 121 ESNINVLP 128


>UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio RepID=CRL_VIBVY
          Length = 129

 Score =  183 bits (466), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 2/126 (1%)

Query: 3   LPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEA 62
           + +    +RL+ K  A+GPY+R+ + K+  ++FDCL+VC++ + +PE+REFWGWWMELEA
Sbjct: 4   VTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEA 63

Query: 63  QESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPA 121
            E  FT +Y  G +D  G+W  + +     +E +  T   FH KL + L     L +   
Sbjct: 64  TEGGFTANYHIGKYDVEGNWLDLAIP-KNALEEVNKTQNCFHLKLVKTLEENFQLSVAYH 122

Query: 122 DDFRDE 127
           +   + 
Sbjct: 123 EQSVEF 128


>UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=Aeromonas
           RepID=A4SJF4_AERS4
          Length = 130

 Score =  181 bits (459), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 8   PKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRF 67
              RL+++F A+GPY+RE  C++ R+ FDCL+VCV+ KPAP+ REFWGWW+ LE Q+  F
Sbjct: 6   TYKRLLRQFAAIGPYLREDLCEEGRYRFDCLSVCVSAKPAPDKREFWGWWLVLEQQDRSF 65

Query: 68  TYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDE 127
           +Y YQ G ++  G+W + P+      E +E TL  F++ + + LT L  +L PA+   +E
Sbjct: 66  SYHYQVGFYNAEGEWINKPLPKKHQAE-VERTLNRFYKLISDKLTLLECQLAPAEQVTNE 124


>UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrionales
           RepID=CRL_VIBPA
          Length = 129

 Score =  175 bits (445), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 2/125 (1%)

Query: 4   PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63
             G    RL+ K  A+GPY+RE + ++ R++FDCL+VCV+ K +PE REFWGWWM+LE+ 
Sbjct: 5   TQGPTHFRLMSKLKAIGPYLREPQSQEGRYYFDCLSVCVDDKKSPEKREFWGWWMDLESI 64

Query: 64  ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPAD 122
           E  FT  Y  G ++K G W S  +    VVE +  T   FH+KL + L     L++E   
Sbjct: 65  EGGFTAKYHIGKYNKEGKWVSEALPQK-VVEEVYFTQSTFHQKLIDTLAEHFKLEVEYHT 123

Query: 123 DFRDE 127
           +  D 
Sbjct: 124 ESFDF 128


>UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photobacterium
           RepID=CRL_PHOPR
          Length = 133

 Score =  171 bits (433), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 2/116 (1%)

Query: 7   HPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESR 66
            P  RL+ K TALGPY+R+ + K+  FFFDCLA C++   +PE REFWGWW+ L A +  
Sbjct: 8   PPHGRLMTKLTALGPYLRKQQSKEGEFFFDCLASCISANKSPEEREFWGWWLVLTATDIG 67

Query: 67  FTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPAD 122
           F Y Y FG +D  G+W    +      E +  TL +F+ KL + +   + +L+   
Sbjct: 68  FEYRYDFGRYDAKGNWIKGTLPAKHT-EAVLKTLDDFYVKLTKFVKE-DCQLDLQA 121


>UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia hollisae CIP 101886
           RepID=D0I7J8_VIBHO
          Length = 150

 Score =  171 bits (433), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 4/121 (3%)

Query: 4   PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63
                  RL+ +F  LGPY+R+ KC ++R+FFDCL+ CVN K +P+ REFWGWWME+  +
Sbjct: 21  TKTLSHGRLLTRFAQLGPYLRQNKCTEDRYFFDCLSACVNAKKSPDSREFWGWWMEINPK 80

Query: 64  ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLT---TLNLKLEP 120
           E  F Y Y FG F+  G+WK V V +    E ++ +L  F+ K+ E +     L +  +P
Sbjct: 81  EGGFEYVYTFGKFNTEGEWKEVNVPNKSSDE-VKASLDAFYSKITEFVEGELILEITAKP 139

Query: 121 A 121
           +
Sbjct: 140 S 140


>UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 Tax=Moritella sp.
           PE36 RepID=A6FCA9_9GAMM
          Length = 136

 Score =  164 bits (415), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 2/116 (1%)

Query: 11  RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70
           + I+   ALGPY+RE  C+   F+FDC +VC++    P+ REF+GWW+E+   +  F Y 
Sbjct: 14  KRIRILNALGPYLREHNCQPTSFYFDCFSVCIDANIEPDEREFYGWWLEMNLVDDTFEYQ 73

Query: 71  YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPADDFR 125
           YQFG ++KAG+W   P+    +   +  +L  F+EKL   LT  L+  L+P+    
Sbjct: 74  YQFGTYNKAGEWIITPIP-KALQHDVTKSLNVFYEKLSVCLTEQLSFNLKPSSILA 128


>UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromonas
           RepID=A1SYU1_PSYIN
          Length = 130

 Score =  155 bits (391), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 1   MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60
           M +       R+ K  T LGPY R     ++ +FFDCL +CV+ +  PE REF GWWM +
Sbjct: 3   MDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIV 62

Query: 61  EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL---TTLNLK 117
           + QE  F Y    G ++  G+W    +      ++L+++   F  +L  LL   T L L 
Sbjct: 63  KKQEDSFEYERFNGRYNLPGNWVDETIYKKN-QQQLDNSFELFLARLETLLEVETELPLN 121

Query: 118 LE 119
           L 
Sbjct: 122 LR 123


>UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio orientalis CIP 102891
           RepID=C9QMM2_VIBOR
          Length = 95

 Score =  130 bits (328), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 34  FFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVV 93
            FDCL+VCVN K +PE REFWGWW+ELE     F   Y+ GL+D  G+W+   +     +
Sbjct: 1   MFDCLSVCVNDKKSPEQREFWGWWLELEKNGEAFEARYRSGLYDVTGEWQDKALPKK-AI 59

Query: 94  ERLEHTLREFHEKLRELLT-TLNLKLEPADDFRDE 127
           + +  T   FH+KL E L     + L    +  + 
Sbjct: 60  QDVTRTQEVFHQKLLETLEKEFEIPLAIHKESVEF 94


>UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio metschnikovii CIP
           69.14 RepID=C9P2Z7_VIBME
          Length = 71

 Score = 78.8 bits (193), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 58  MELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNL 116
           MEL   E+ F  +Y+ G ++ AG W          +  +  T  +FH+KL + L     L
Sbjct: 1   MELTTTETGFEANYRIGRYNLAGQW-EESKPTAAALPEVIRTQEDFHKKLAQTLQQRFEL 59

Query: 117 KLEPADDFRDE 127
            L       + 
Sbjct: 60  SLSLHQQSTEF 70


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.310    0.147    0.485 

Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,029,496
Number of Sequences: 3077464
Number of extensions: 23490990
Number of successful extensions: 58955
Number of sequences better than 1.0e-01: 15
Number of HSP's better than  0.1 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58911
Number of HSP's gapped (non-prelim): 30
length of query: 133
length of database: 1,040,396,356
effective HSP length: 98
effective length of query: 35
effective length of database: 738,804,884
effective search space: 25858170940
effective search space used: 25858170940
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 87 (38.0 bits)