BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (133 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enter... 219 2e-56 UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=A... 152 3e-36 UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteria... 134 8e-31 UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=P... 134 1e-30 UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Provide... 133 1e-30 UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Ta... 120 1e-26 UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=A... 119 3e-26 UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia ... 111 9e-24 UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photoba... 104 9e-22 UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrio... 104 1e-21 UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio... 100 2e-20 UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 T... 99 4e-20 UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio ori... 77 2e-13 UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromon... 72 4e-12 >UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enterobacteriaceae RepID=CRL_ENT38 Length = 133 Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 101/133 (75%), Positives = 115/133 (86%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 MTLPSGHPKSRLIKKF ALGPYIRE +C++NRFFFDCLAVCVNV+PAPE REFWGWWME+ Sbjct: 1 MTLPSGHPKSRLIKKFMALGPYIREEQCEENRFFFDCLAVCVNVQPAPEEREFWGWWMEM 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 EA+E RFTY+Y FGLF+KAG W++ +KD EVVERLE TLR FHEK R LL T LKLEP Sbjct: 61 EAEEKRFTYTYHFGLFNKAGHWQATTIKDKEVVERLEQTLRGFHEKARALLETFELKLEP 120 Query: 121 ADDFRDEPVKLTA 133 ADDF +E +KL+A Sbjct: 121 ADDFTNEKLKLSA 133 >UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U044_9ENTR Length = 129 Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 64/121 (52%), Positives = 88/121 (72%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M L S + KS+L+K FT LGPY+RE C+D+ FFFDCLA+CVN K APE REFWGWW+EL Sbjct: 1 MALTSNYSKSKLLKHFTRLGPYLRESLCQDDLFFFDCLAICVNAKTAPEKREFWGWWLEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 + + F Y Y+ G+FDKAG+W+ + + + +++ LE TL+EFH++L + L TL L L P Sbjct: 61 RGELNGFVYHYKLGMFDKAGNWQHIEINKSNIIKSLEDTLQEFHKRLSDSLNTLELTLTP 120 Query: 121 A 121 Sbjct: 121 C 121 >UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=C4K336_HAMD5 Length = 137 Score = 134 bits (337), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 55/118 (46%), Positives = 85/118 (72%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M L + HPK +L+K F ALGPY+RE +C+ + FFFDCLA+CV++K APE R+FWGWW+EL Sbjct: 1 MPLINAHPKCKLMKCFAALGPYLRESQCQKDYFFFDCLAICVDIKLAPEKRQFWGWWLEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKL 118 ++ F Y+YQFGL+ + W +K ++ ++LE T +F+E+L E+L +++ +L Sbjct: 61 RPEDKCFIYTYQFGLYTQDEQWMVKKIKAADIQQKLETTFIDFYERLNEMLASIDCEL 118 >UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=Proteus RepID=B4EUU9_PROMH Length = 133 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 61/128 (47%), Positives = 85/128 (66%), Gaps = 1/128 (0%) Query: 5 SGHP-KSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63 S HP + +L+K+F +GPYIRE +C++++FFFDCLAVCVN K PE REFWGWWMELE Sbjct: 4 SLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWGWWMELERN 63 Query: 64 ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADD 123 + Y YQ GLFDK GDW + + +V+E + TL FH+ L+ ++ L + L P + Sbjct: 64 GEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVPDEK 123 Query: 124 FRDEPVKL 131 + P+ L Sbjct: 124 MSNFPLPL 131 >UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2PU02_PROST Length = 133 Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 60/133 (45%), Positives = 83/133 (62%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M LP+ + + +KKF+ALGPY+RE +C D +FFD L VCVNV APE REFWGWWM L Sbjct: 1 MALPTDYSNGKYLKKFSALGPYLREKQCLDGCYFFDSLTVCVNVNSAPERREFWGWWMLL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 E F YSY GL++ G W+ P+KD ++ +E L FH+ L + L+ L L L P Sbjct: 61 SPNEDGFEYSYHLGLYNVHGTWQDKPLKDNATLDIIEQNLISFHQSLSKQLSELELSLFP 120 Query: 121 ADDFRDEPVKLTA 133 + + ++L+A Sbjct: 121 SAKMAEFKLELSA 133 >UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Tax=Providencia RepID=D1P5V3_9ENTR Length = 146 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M LP+ + + +KKF A+GPY+RE + + +FFD L VCVN APE REFWGWW+EL Sbjct: 14 MALPTDYSNGKYLKKFAAIGPYLREKQSLKDCYFFDSLVVCVNANIAPEKREFWGWWLEL 73 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 + F ++Y G++D G+W++ +K++E + +E L FH+ L + L+ L L L P Sbjct: 74 VSTHEGFEFAYHLGMYDNQGNWQAKTLKNSETTKAVEKNLVSFHKSLSQRLSELELTLYP 133 Query: 121 ADDFRDEPVKLTA 133 + + ++L+A Sbjct: 134 SPLMTELKLELSA 146 >UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=Aeromonas RepID=A4SJF4_AERS4 Length = 130 Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 1/117 (0%) Query: 11 RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70 RL+++F A+GPY+RE C++ R+ FDCL+VCV+ KPAP+ REFWGWW+ LE Q+ F+Y Sbjct: 9 RLLRQFAAIGPYLREDLCEEGRYRFDCLSVCVSAKPAPDKREFWGWWLVLEQQDRSFSYH 68 Query: 71 YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDE 127 YQ G ++ G+W + P+ E +E TL F++ + + LT L +L PA+ +E Sbjct: 69 YQVGFYNAEGEWINKPLPKKHQAE-VERTLNRFYKLISDKLTLLECQLAPAEQVTNE 124 >UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I7J8_VIBHO Length = 150 Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 47/102 (46%), Positives = 68/102 (66%), Gaps = 1/102 (0%) Query: 10 SRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTY 69 RL+ +F LGPY+R+ KC ++R+FFDCL+ CVN K +P+ REFWGWWME+ +E F Y Sbjct: 27 GRLLTRFAQLGPYLRQNKCTEDRYFFDCLSACVNAKKSPDSREFWGWWMEINPKEGGFEY 86 Query: 70 SYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL 111 Y FG F+ G+WK V V + E ++ +L F+ K+ E + Sbjct: 87 VYTFGKFNTEGEWKEVNVPNKSSDE-VKASLDAFYSKITEFV 127 >UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photobacterium RepID=CRL_PHOPR Length = 133 Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 68/106 (64%), Gaps = 5/106 (4%) Query: 8 PKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRF 67 P RL+ K TALGPY+R+ + K+ FFFDCLA C++ +PE REFWGWW+ L A + F Sbjct: 9 PHGRLMTKLTALGPYLRKQQSKEGEFFFDCLASCISANKSPEEREFWGWWLVLTATDIGF 68 Query: 68 TYSYQFGLFDKAGDW--KSVPVKDTEVVERLEHTLREFHEKLRELL 111 Y Y FG +D G+W ++P K TE V + TL +F+ KL + + Sbjct: 69 EYRYDFGRYDAKGNWIKGTLPAKHTEAVLK---TLDDFYVKLTKFV 111 >UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrionales RepID=CRL_VIBPA Length = 129 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/109 (46%), Positives = 72/109 (66%), Gaps = 2/109 (1%) Query: 11 RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70 RL+ K A+GPY+RE + ++ R++FDCL+VCV+ K +PE REFWGWWM+LE+ E FT Sbjct: 12 RLMSKLKAIGPYLREPQSQEGRYYFDCLSVCVDDKKSPEKREFWGWWMDLESIEGGFTAK 71 Query: 71 YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLE 119 Y G ++K G W S + +VVE + T FH+KL + L + KLE Sbjct: 72 YHIGKYNKEGKWVSEALPQ-KVVEEVYFTQSTFHQKLIDTLAE-HFKLE 118 >UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio RepID=CRL_VIBVY Length = 129 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%) Query: 10 SRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTY 69 +RL+ K A+GPY+R+ + K+ ++FDCL+VC++ + +PE+REFWGWWMELEA E FT Sbjct: 11 NRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEATEGGFTA 70 Query: 70 SYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL 111 +Y G +D G+W + + +E + T FH KL + L Sbjct: 71 NYHIGKYDVEGNWLDLAIPKN-ALEEVNKTQNCFHLKLVKTL 111 >UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 Tax=Moritella sp. PE36 RepID=A6FCA9_9GAMM Length = 136 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 2/111 (1%) Query: 13 IKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQ 72 I+ ALGPY+RE C+ F+FDC +VC++ P+ REF+GWW+E+ + F Y YQ Sbjct: 16 IRILNALGPYLREHNCQPTSFYFDCFSVCIDANIEPDEREFYGWWLEMNLVDDTFEYQYQ 75 Query: 73 FGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLT-TLNLKLEPAD 122 FG ++KAG+W P+ + + +L F+EKL LT L+ L+P+ Sbjct: 76 FGTYNKAGEWIITPIPKA-LQHDVTKSLNVFYEKLSVCLTEQLSFNLKPSS 125 >UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QMM2_VIBOR Length = 95 Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 5/80 (6%) Query: 34 FFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDW--KSVPVKDTE 91 FDCL+VCVN K +PE REFWGWW+ELE F Y+ GL+D G+W K++P K + Sbjct: 1 MFDCLSVCVNDKKSPEQREFWGWWLELEKNGEAFEARYRSGLYDVTGEWQDKALPKKAIQ 60 Query: 92 VVERLEHTLREFHEKLRELL 111 V R + FH+KL E L Sbjct: 61 DVTRTQEV---FHQKLLETL 77 >UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromonas RepID=A1SYU1_PSYIN Length = 130 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 1/111 (0%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M + R+ K T LGPY R ++ +FFDCL +CV+ + PE REF GWWM + Sbjct: 3 MDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIV 62 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL 111 + QE F Y G ++ G+W + ++L+++ F +L LL Sbjct: 63 KKQEDSFEYERFNGRYNLPGNWVDETIYKKN-QQQLDNSFELFLARLETLL 112 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enter... 208 5e-53 UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Provide... 204 8e-52 UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Ta... 199 4e-50 UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=P... 192 4e-48 UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=A... 190 9e-48 UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteria... 181 7e-45 UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=A... 175 3e-43 UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio... 163 2e-39 UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrio... 162 5e-39 UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia ... 160 9e-39 UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 T... 160 2e-38 UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photoba... 159 3e-38 UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromon... 146 2e-34 UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio ori... 115 6e-25 Sequences not found previously or not previously below threshold: UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio met... 57 2e-07 >UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enterobacteriaceae RepID=CRL_ENT38 Length = 133 Score = 208 bits (529), Expect = 5e-53, Method: Composition-based stats. Identities = 101/133 (75%), Positives = 115/133 (86%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 MTLPSGHPKSRLIKKF ALGPYIRE +C++NRFFFDCLAVCVNV+PAPE REFWGWWME+ Sbjct: 1 MTLPSGHPKSRLIKKFMALGPYIREEQCEENRFFFDCLAVCVNVQPAPEEREFWGWWMEM 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 EA+E RFTY+Y FGLF+KAG W++ +KD EVVERLE TLR FHEK R LL T LKLEP Sbjct: 61 EAEEKRFTYTYHFGLFNKAGHWQATTIKDKEVVERLEQTLRGFHEKARALLETFELKLEP 120 Query: 121 ADDFRDEPVKLTA 133 ADDF +E +KL+A Sbjct: 121 ADDFTNEKLKLSA 133 >UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2PU02_PROST Length = 133 Score = 204 bits (519), Expect = 8e-52, Method: Composition-based stats. Identities = 60/133 (45%), Positives = 83/133 (62%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M LP+ + + +KKF+ALGPY+RE +C D +FFD L VCVNV APE REFWGWWM L Sbjct: 1 MALPTDYSNGKYLKKFSALGPYLREKQCLDGCYFFDSLTVCVNVNSAPERREFWGWWMLL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 E F YSY GL++ G W+ P+KD ++ +E L FH+ L + L+ L L L P Sbjct: 61 SPNEDGFEYSYHLGLYNVHGTWQDKPLKDNATLDIIEQNLISFHQSLSKQLSELELSLFP 120 Query: 121 ADDFRDEPVKLTA 133 + + ++L+A Sbjct: 121 SAKMAEFKLELSA 133 >UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Tax=Providencia RepID=D1P5V3_9ENTR Length = 146 Score = 199 bits (505), Expect = 4e-50, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M LP+ + + +KKF A+GPY+RE + + +FFD L VCVN APE REFWGWW+EL Sbjct: 14 MALPTDYSNGKYLKKFAAIGPYLREKQSLKDCYFFDSLVVCVNANIAPEKREFWGWWLEL 73 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 + F ++Y G++D G+W++ +K++E + +E L FH+ L + L+ L L L P Sbjct: 74 VSTHEGFEFAYHLGMYDNQGNWQAKTLKNSETTKAVEKNLVSFHKSLSQRLSELELTLYP 133 Query: 121 ADDFRDEPVKLTA 133 + + ++L+A Sbjct: 134 SPLMTELKLELSA 146 >UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=Proteus RepID=B4EUU9_PROMH Length = 133 Score = 192 bits (487), Expect = 4e-48, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 84/131 (64%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 MT + +L+K+F +GPYIRE +C++++FFFDCLAVCVN K PE REFWGWWMEL Sbjct: 1 MTSSLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWGWWMEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 E + Y YQ GLFDK GDW + + +V+E + TL FH+ L+ ++ L + L P Sbjct: 61 ERNGEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVP 120 Query: 121 ADDFRDEPVKL 131 + + P+ L Sbjct: 121 DEKMSNFPLPL 131 >UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U044_9ENTR Length = 129 Score = 190 bits (484), Expect = 9e-48, Method: Composition-based stats. Identities = 64/124 (51%), Positives = 88/124 (70%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M L S + KS+L+K FT LGPY+RE C+D+ FFFDCLA+CVN K APE REFWGWW+EL Sbjct: 1 MALTSNYSKSKLLKHFTRLGPYLRESLCQDDLFFFDCLAICVNAKTAPEKREFWGWWLEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 + + F Y Y+ G+FDKAG+W+ + + + +++ LE TL+EFH++L + L TL L L P Sbjct: 61 RGELNGFVYHYKLGMFDKAGNWQHIEINKSNIIKSLEDTLQEFHKRLSDSLNTLELTLTP 120 Query: 121 ADDF 124 Sbjct: 121 CPKM 124 >UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=C4K336_HAMD5 Length = 137 Score = 181 bits (459), Expect = 7e-45, Method: Composition-based stats. Identities = 56/128 (43%), Positives = 87/128 (67%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M L + HPK +L+K F ALGPY+RE +C+ + FFFDCLA+CV++K APE R+FWGWW+EL Sbjct: 1 MPLINAHPKCKLMKCFAALGPYLRESQCQKDYFFFDCLAICVDIKLAPEKRQFWGWWLEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 ++ F Y+YQFGL+ + W +K ++ ++LE T +F+E+L E+L +++ +L Sbjct: 61 RPEDKCFIYTYQFGLYTQDEQWMVKKIKAADIQQKLETTFIDFYERLNEMLASIDCELRL 120 Query: 121 ADDFRDEP 128 + P Sbjct: 121 ESNINVLP 128 >UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=Aeromonas RepID=A4SJF4_AERS4 Length = 130 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 1/117 (0%) Query: 11 RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70 RL+++F A+GPY+RE C++ R+ FDCL+VCV+ KPAP+ REFWGWW+ LE Q+ F+Y Sbjct: 9 RLLRQFAAIGPYLREDLCEEGRYRFDCLSVCVSAKPAPDKREFWGWWLVLEQQDRSFSYH 68 Query: 71 YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDE 127 YQ G ++ G+W + P+ E +E TL F++ + + LT L +L PA+ +E Sbjct: 69 YQVGFYNAEGEWINKPLPKKHQAE-VERTLNRFYKLISDKLTLLECQLAPAEQVTNE 124 >UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio RepID=CRL_VIBVY Length = 129 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 69/111 (62%), Gaps = 1/111 (0%) Query: 3 LPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEA 62 + + +RL+ K A+GPY+R+ + K+ ++FDCL+VC++ + +PE+REFWGWWMELEA Sbjct: 4 VTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEA 63 Query: 63 QESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT 113 E FT +Y G +D G+W + + +E + T FH KL + L Sbjct: 64 TEGGFTANYHIGKYDVEGNWLDLAIPK-NALEEVNKTQNCFHLKLVKTLEE 113 >UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrionales RepID=CRL_VIBPA Length = 129 Score = 162 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 2/116 (1%) Query: 4 PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63 G RL+ K A+GPY+RE + ++ R++FDCL+VCV+ K +PE REFWGWWM+LE+ Sbjct: 5 TQGPTHFRLMSKLKAIGPYLREPQSQEGRYYFDCLSVCVDDKKSPEKREFWGWWMDLESI 64 Query: 64 ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLE 119 E FT Y G ++K G W S + VVE + T FH+KL + L + KLE Sbjct: 65 EGGFTAKYHIGKYNKEGKWVSEALPQK-VVEEVYFTQSTFHQKLIDTLAE-HFKLE 118 >UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I7J8_VIBHO Length = 150 Score = 160 bits (406), Expect = 9e-39, Method: Composition-based stats. Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 4/117 (3%) Query: 8 PKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRF 67 RL+ +F LGPY+R+ KC ++R+FFDCL+ CVN K +P+ REFWGWWME+ +E F Sbjct: 25 SHGRLLTRFAQLGPYLRQNKCTEDRYFFDCLSACVNAKKSPDSREFWGWWMEINPKEGGF 84 Query: 68 TYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLT---TLNLKLEPA 121 Y Y FG F+ G+WK V V + E ++ +L F+ K+ E + L + +P+ Sbjct: 85 EYVYTFGKFNTEGEWKEVNVPNKSSDE-VKASLDAFYSKITEFVEGELILEITAKPS 140 >UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 Tax=Moritella sp. PE36 RepID=A6FCA9_9GAMM Length = 136 Score = 160 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 11 RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70 + I+ ALGPY+RE C+ F+FDC +VC++ P+ REF+GWW+E+ + F Y Sbjct: 14 KRIRILNALGPYLREHNCQPTSFYFDCFSVCIDANIEPDEREFYGWWLEMNLVDDTFEYQ 73 Query: 71 YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPADDFR 125 YQFG ++KAG+W P+ + + +L F+EKL LT L+ L+P+ Sbjct: 74 YQFGTYNKAGEWIITPIPKA-LQHDVTKSLNVFYEKLSVCLTEQLSFNLKPSSILA 128 >UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photobacterium RepID=CRL_PHOPR Length = 133 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 2/112 (1%) Query: 7 HPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESR 66 P RL+ K TALGPY+R+ + K+ FFFDCLA C++ +PE REFWGWW+ L A + Sbjct: 8 PPHGRLMTKLTALGPYLRKQQSKEGEFFFDCLASCISANKSPEEREFWGWWLVLTATDIG 67 Query: 67 FTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKL 118 F Y Y FG +D G+W + E + TL +F+ KL + + + +L Sbjct: 68 FEYRYDFGRYDAKGNWIKGTLPAKHT-EAVLKTLDDFYVKLTKFVKE-DCQL 117 >UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromonas RepID=A1SYU1_PSYIN Length = 130 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M + R+ K T LGPY R ++ +FFDCL +CV+ + PE REF GWWM + Sbjct: 3 MDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIV 62 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL---TTLNLK 117 + QE F Y G ++ G+W + ++L+++ F +L LL T L L Sbjct: 63 KKQEDSFEYERFNGRYNLPGNWVDETIYKKN-QQQLDNSFELFLARLETLLEVETELPLN 121 Query: 118 L 118 L Sbjct: 122 L 122 >UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QMM2_VIBOR Length = 95 Score = 115 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Query: 34 FFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVV 93 FDCL+VCVN K +PE REFWGWW+ELE F Y+ GL+D G+W+ + + Sbjct: 1 MFDCLSVCVNDKKSPEQREFWGWWLELEKNGEAFEARYRSGLYDVTGEWQDKALPKK-AI 59 Query: 94 ERLEHTLREFHEKLRELLT-TLNLKLE 119 + + T FH+KL E L + L Sbjct: 60 QDVTRTQEVFHQKLLETLEKEFEIPLA 86 >UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P2Z7_VIBME Length = 71 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 58 MELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNL 116 MEL E+ F +Y+ G ++ AG W + + T +FH+KL + L L Sbjct: 1 MELTTTETGFEANYRIGRYNLAGQW-EESKPTAAALPEVIRTQEDFHKKLAQTLQQRFEL 59 Query: 117 KLEPADDFRDE 127 L + Sbjct: 60 SLSLHQQSTEF 70 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enter... 209 2e-53 UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Provide... 209 3e-53 UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Ta... 204 1e-51 UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=P... 203 1e-51 UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=A... 197 1e-49 UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteria... 191 5e-48 UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=A... 181 6e-45 UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio... 178 6e-44 UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrio... 172 3e-42 UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photoba... 170 1e-41 UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia ... 170 2e-41 UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 T... 165 3e-40 UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromon... 156 2e-37 UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio ori... 127 1e-28 UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio met... 78 1e-13 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_A4W6X2 Sigma factor-binding protein crl n=152 Tax=Enterobacteriaceae RepID=CRL_ENT38 Length = 133 Score = 209 bits (533), Expect = 2e-53, Method: Composition-based stats. Identities = 101/133 (75%), Positives = 115/133 (86%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 MTLPSGHPKSRLIKKF ALGPYIRE +C++NRFFFDCLAVCVNV+PAPE REFWGWWME+ Sbjct: 1 MTLPSGHPKSRLIKKFMALGPYIREEQCEENRFFFDCLAVCVNVQPAPEEREFWGWWMEM 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 EA+E RFTY+Y FGLF+KAG W++ +KD EVVERLE TLR FHEK R LL T LKLEP Sbjct: 61 EAEEKRFTYTYHFGLFNKAGHWQATTIKDKEVVERLEQTLRGFHEKARALLETFELKLEP 120 Query: 121 ADDFRDEPVKLTA 133 ADDF +E +KL+A Sbjct: 121 ADDFTNEKLKLSA 133 >UniRef50_B2PU02 Putative uncharacterized protein n=2 Tax=Providencia RepID=B2PU02_PROST Length = 133 Score = 209 bits (531), Expect = 3e-53, Method: Composition-based stats. Identities = 60/133 (45%), Positives = 83/133 (62%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M LP+ + + +KKF+ALGPY+RE +C D +FFD L VCVNV APE REFWGWWM L Sbjct: 1 MALPTDYSNGKYLKKFSALGPYLREKQCLDGCYFFDSLTVCVNVNSAPERREFWGWWMLL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 E F YSY GL++ G W+ P+KD ++ +E L FH+ L + L+ L L L P Sbjct: 61 SPNEDGFEYSYHLGLYNVHGTWQDKPLKDNATLDIIEQNLISFHQSLSKQLSELELSLFP 120 Query: 121 ADDFRDEPVKLTA 133 + + ++L+A Sbjct: 121 SAKMAEFKLELSA 133 >UniRef50_D1P5V3 Curlin transcriptional activatory protein n=2 Tax=Providencia RepID=D1P5V3_9ENTR Length = 146 Score = 204 bits (518), Expect = 1e-51, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 83/133 (62%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M LP+ + + +KKF A+GPY+RE + + +FFD L VCVN APE REFWGWW+EL Sbjct: 14 MALPTDYSNGKYLKKFAAIGPYLREKQSLKDCYFFDSLVVCVNANIAPEKREFWGWWLEL 73 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 + F ++Y G++D G+W++ +K++E + +E L FH+ L + L+ L L L P Sbjct: 74 VSTHEGFEFAYHLGMYDNQGNWQAKTLKNSETTKAVEKNLVSFHKSLSQRLSELELTLYP 133 Query: 121 ADDFRDEPVKLTA 133 + + ++L+A Sbjct: 134 SPLMTELKLELSA 146 >UniRef50_B4EUU9 Curlin genes transcriptional regulator n=3 Tax=Proteus RepID=B4EUU9_PROMH Length = 133 Score = 203 bits (517), Expect = 1e-51, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 84/131 (64%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 MT + +L+K+F +GPYIRE +C++++FFFDCLAVCVN K PE REFWGWWMEL Sbjct: 1 MTSSLHPTRGKLLKRFAQIGPYIREQQCQESQFFFDCLAVCVNKKVTPEKREFWGWWMEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 E + Y YQ GLFDK GDW + + +V+E + TL FH+ L+ ++ L + L P Sbjct: 61 ERNGEQLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVP 120 Query: 121 ADDFRDEPVKL 131 + + P+ L Sbjct: 121 DEKMSNFPLPL 131 >UniRef50_D2U044 Curlin genes transcriptional regulator n=1 Tax=Arsenophonus nasoniae RepID=D2U044_9ENTR Length = 129 Score = 197 bits (500), Expect = 1e-49, Method: Composition-based stats. Identities = 64/124 (51%), Positives = 88/124 (70%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M L S + KS+L+K FT LGPY+RE C+D+ FFFDCLA+CVN K APE REFWGWW+EL Sbjct: 1 MALTSNYSKSKLLKHFTRLGPYLRESLCQDDLFFFDCLAICVNAKTAPEKREFWGWWLEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 + + F Y Y+ G+FDKAG+W+ + + + +++ LE TL+EFH++L + L TL L L P Sbjct: 61 RGELNGFVYHYKLGMFDKAGNWQHIEINKSNIIKSLEDTLQEFHKRLSDSLNTLELTLTP 120 Query: 121 ADDF 124 Sbjct: 121 CPKM 124 >UniRef50_C4K336 Transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=C4K336_HAMD5 Length = 137 Score = 191 bits (486), Expect = 5e-48, Method: Composition-based stats. Identities = 56/128 (43%), Positives = 87/128 (67%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M L + HPK +L+K F ALGPY+RE +C+ + FFFDCLA+CV++K APE R+FWGWW+EL Sbjct: 1 MPLINAHPKCKLMKCFAALGPYLRESQCQKDYFFFDCLAICVDIKLAPEKRQFWGWWLEL 60 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEP 120 ++ F Y+YQFGL+ + W +K ++ ++LE T +F+E+L E+L +++ +L Sbjct: 61 RPEDKCFIYTYQFGLYTQDEQWMVKKIKAADIQQKLETTFIDFYERLNEMLASIDCELRL 120 Query: 121 ADDFRDEP 128 + P Sbjct: 121 ESNINVLP 128 >UniRef50_A4SJF4 Curlin genes transcriptional regulator n=2 Tax=Aeromonas RepID=A4SJF4_AERS4 Length = 130 Score = 181 bits (460), Expect = 6e-45, Method: Composition-based stats. Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Query: 8 PKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRF 67 RL+++F A+GPY+RE C++ R+ FDCL+VCV+ KPAP+ REFWGWW+ LE Q+ F Sbjct: 6 TYKRLLRQFAAIGPYLREDLCEEGRYRFDCLSVCVSAKPAPDKREFWGWWLVLEQQDRSF 65 Query: 68 TYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDE 127 +Y YQ G ++ G+W + P+ E +E TL F++ + + LT L +L PA+ +E Sbjct: 66 SYHYQVGFYNAEGEWINKPLPKKHQAE-VERTLNRFYKLISDKLTLLECQLAPAEQVTNE 124 >UniRef50_Q7MN60 Sigma factor-binding protein crl n=35 Tax=Vibrio RepID=CRL_VIBVY Length = 129 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 73/126 (57%), Gaps = 2/126 (1%) Query: 3 LPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEA 62 + + +RL+ K A+GPY+R+ + K+ ++FDCL+VC++ + +PE+REFWGWWMELEA Sbjct: 4 VTNNPTHNRLLAKLRAMGPYLRDPQSKEGLYYFDCLSVCIDDRKSPELREFWGWWMELEA 63 Query: 63 QESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPA 121 E FT +Y G +D G+W + + +E + T FH KL + L L + Sbjct: 64 TEGGFTANYHIGKYDVEGNWLDLAIP-KNALEEVNKTQNCFHLKLVKTLEENFQLSVAYH 122 Query: 122 DDFRDE 127 + + Sbjct: 123 EQSVEF 128 >UniRef50_Q87RV1 Sigma factor-binding protein crl n=14 Tax=Vibrionales RepID=CRL_VIBPA Length = 129 Score = 172 bits (437), Expect = 3e-42, Method: Composition-based stats. Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 2/116 (1%) Query: 4 PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63 G RL+ K A+GPY+RE + ++ R++FDCL+VCV+ K +PE REFWGWWM+LE+ Sbjct: 5 TQGPTHFRLMSKLKAIGPYLREPQSQEGRYYFDCLSVCVDDKKSPEKREFWGWWMDLESI 64 Query: 64 ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLE 119 E FT Y G ++K G W S + VVE + T FH+KL + L + KLE Sbjct: 65 EGGFTAKYHIGKYNKEGKWVSEALPQK-VVEEVYFTQSTFHQKLIDTLAE-HFKLE 118 >UniRef50_Q6LTX4 Sigma factor-binding protein crl n=4 Tax=Photobacterium RepID=CRL_PHOPR Length = 133 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 2/116 (1%) Query: 7 HPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESR 66 P RL+ K TALGPY+R+ + K+ FFFDCLA C++ +PE REFWGWW+ L A + Sbjct: 8 PPHGRLMTKLTALGPYLRKQQSKEGEFFFDCLASCISANKSPEEREFWGWWLVLTATDIG 67 Query: 67 FTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPAD 122 F Y Y FG +D G+W + E + TL +F+ KL + + + +L+ Sbjct: 68 FEYRYDFGRYDAKGNWIKGTLPAKHT-EAVLKTLDDFYVKLTKFVKE-DCQLDLQA 121 >UniRef50_D0I7J8 Transcriptional regulator Crl n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I7J8_VIBHO Length = 150 Score = 170 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 4/121 (3%) Query: 4 PSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQ 63 RL+ +F LGPY+R+ KC ++R+FFDCL+ CVN K +P+ REFWGWWME+ + Sbjct: 21 TKTLSHGRLLTRFAQLGPYLRQNKCTEDRYFFDCLSACVNAKKSPDSREFWGWWMEINPK 80 Query: 64 ESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLT---TLNLKLEP 120 E F Y Y FG F+ G+WK V V + E ++ +L F+ K+ E + L + +P Sbjct: 81 EGGFEYVYTFGKFNTEGEWKEVNVPNKSSDE-VKASLDAFYSKITEFVEGELILEITAKP 139 Query: 121 A 121 + Sbjct: 140 S 140 >UniRef50_A6FCA9 Hypothetical transcriptional regulator Crl n=1 Tax=Moritella sp. PE36 RepID=A6FCA9_9GAMM Length = 136 Score = 165 bits (419), Expect = 3e-40, Method: Composition-based stats. Identities = 44/116 (37%), Positives = 68/116 (58%), Gaps = 2/116 (1%) Query: 11 RLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYS 70 + I+ ALGPY+RE C+ F+FDC +VC++ P+ REF+GWW+E+ + F Y Sbjct: 14 KRIRILNALGPYLREHNCQPTSFYFDCFSVCIDANIEPDEREFYGWWLEMNLVDDTFEYQ 73 Query: 71 YQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNLKLEPADDFR 125 YQFG ++KAG+W P+ + + +L F+EKL LT L+ L+P+ Sbjct: 74 YQFGTYNKAGEWIITPIPKA-LQHDVTKSLNVFYEKLSVCLTEQLSFNLKPSSILA 128 >UniRef50_A1SYU1 Transcriptional regulator Crl n=2 Tax=Psychromonas RepID=A1SYU1_PSYIN Length = 130 Score = 156 bits (394), Expect = 2e-37, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 4/122 (3%) Query: 1 MTLPSGHPKSRLIKKFTALGPYIREGKCKDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL 60 M + R+ K T LGPY R ++ +FFDCL +CV+ + PE REF GWWM + Sbjct: 3 MDVKKSPSHGRITKLLTDLGPYFRRLNSTESSYFFDCLEICVDDQKEPEEREFLGWWMIV 62 Query: 61 EAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELL---TTLNLK 117 + QE F Y G ++ G+W + ++L+++ F +L LL T L L Sbjct: 63 KKQEDSFEYERFNGRYNLPGNWVDETIYKKN-QQQLDNSFELFLARLETLLEVETELPLN 121 Query: 118 LE 119 L Sbjct: 122 LR 123 >UniRef50_C9QMM2 Transcriptional regulator Crl n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QMM2_VIBOR Length = 95 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 34 FFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVV 93 FDCL+VCVN K +PE REFWGWW+ELE F Y+ GL+D G+W+ + + Sbjct: 1 MFDCLSVCVNDKKSPEQREFWGWWLELEKNGEAFEARYRSGLYDVTGEWQDKALPKK-AI 59 Query: 94 ERLEHTLREFHEKLRELLT-TLNLKLEPADDFRDE 127 + + T FH+KL E L + L + + Sbjct: 60 QDVTRTQEVFHQKLLETLEKEFEIPLAIHKESVEF 94 >UniRef50_C9P2Z7 Transcriptional regulator Crl n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P2Z7_VIBME Length = 71 Score = 77.7 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 58 MELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTT-LNL 116 MEL E+ F +Y+ G ++ AG W + + T +FH+KL + L L Sbjct: 1 MELTTTETGFEANYRIGRYNLAGQW-EESKPTAAALPEVIRTQEDFHKKLAQTLQQRFEL 59 Query: 117 KLEPADDFRDE 127 L + Sbjct: 60 SLSLHQQSTEF 70 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.146 0.484 Lambda K H 0.267 0.0452 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 857,484,118 Number of Sequences: 3077464 Number of extensions: 33770037 Number of successful extensions: 81517 Number of sequences better than 1.0e-01: 15 Number of HSP's better than 0.1 without gapping: 44 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 81459 Number of HSP's gapped (non-prelim): 45 length of query: 133 length of database: 1,040,396,356 effective HSP length: 98 effective length of query: 35 effective length of database: 738,804,884 effective search space: 25858170940 effective search space used: 25858170940 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.0 bits)