10/01/2012 07:55:21 : INFO  : Run start: Tue Jan 10 07:55:20 GMT 2012
10/01/2012 07:55:25 : INFO  : Initialised job
10/01/2012 07:55:26 : INFO  : Renaming log file 'phyre2_20120110_075520.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/b6ee1aed79cad8cc/phyre_20120110_075520.log'
10/01/2012 07:55:27 : INFO  : Initialised job:
Sequence
>batch____
MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDITRLPKSLKVLLENLLRWQDGNSVTE
EDIHALAGWLKNAHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVKRLGGDTAKVNPL
SPVDLVIDHSVTVDRFGDDEAFEENVRLEMERNHERYVFLKWGKQAFSRFSVVPPGTGIC
HQVNLEYLGKAVWSELQDGEWIAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLRKHGVVGKFVEFYGDGLDSLPLADR
ATIANMSPEYGATCGFFPIDAVTLDYMRLSGRSEDQVELVEKYAKAQGMWRNPGDEPIFT
STLELDMNDVEASLAGPKRPQDRVALPDVPKAFAASNELEVNATHKDRQPVDYVMNGHQY
QLPDGAVVIAAITSCTNTSNPSVLMAAGLLAKKAVTLGLKRQPWVKASLAPGSKVVSDYL
AKAKLTPYLDELGFNLVGYGCTTCIGNSGPLPDPIETAIKKSDLTVGAVLSGNRNFEGRI
HPLVKTNWLASPPLVVAYALAGNMNINLASEPIGHDRKGDPVYLKDIWPSAQEIARAVEQ
VSTEMFRKEYAEVFEGTAEWKGINVTRSDTYGWQEDSTYIRLSPFFDEMQATPAPVEDIH
GARILAMLGDSVTTDHISPAGSIKPDSPAGRYLQGRGVERKDFNSYGSRRGNHEVMMRGT
FANIRIRNEMVPGVEGGMTRHLPDSDVVSIYDAAMRYKQEQTPLAVIAGKEYGSGSSRDW
AAKGPRLLGIRVVIAESFERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEKIDIGDLQN
LQPGATVPVTLTRADGSQEVVPCRCRIDTATELTYYQNDGILHYVIRNMLK

10/01/2012 07:55:28 : INFO  : Checked sequence
10/01/2012 07:55:30 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 07:55:31 : INFO  : PSI-BLAST 3 iterations
10/01/2012 07:58:26 : INFO  : PSI-BLAST 5 iterations
10/01/2012 08:00:14 : INFO  : Finished PSI-BLAST
10/01/2012 08:00:15 : INFO  : Running Buildali to generate a3m file
10/01/2012 08:10:50 : INFO  : Converting to HMM
10/01/2012 08:10:55 : INFO  : Calibrating HMM
10/01/2012 08:11:21 : INFO  : Searching HMM database
10/01/2012 08:25:43 : INFO  : Finished buildali
10/01/2012 08:25:44 : INFO  : Predicting secondary structure
10/01/2012 08:25:53 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 08:25:55 : INFO  : Predicting Disordered regions
10/01/2012 08:25:59 : INFO  : Predicted Disorder (Disopred)
10/01/2012 08:26:01 : INFO  : Running memsat_svm check
10/01/2012 08:30:22 : INFO  : Running memsat_svm full
10/01/2012 08:41:25 : INFO  : Predicted Transmembrane (memsat_svm) ID 'b6ee1aed79cad8cc'
10/01/2012 08:41:27 : INFO  : Initialising fold library search
10/01/2012 08:41:31 : INFO  : Initialised search input
10/01/2012 08:41:35 : INFO  : Building Ensemble models
10/01/2012 08:41:39 : INFO  : Building hh.c2b3yB_.model.1.pdb
10/01/2012 08:41:57 : INFO  : Building c2b3yB_.1.pdb
10/01/2012 08:42:12 : INFO  : Building c5acnA_.2.pdb
10/01/2012 08:42:27 : INFO  : Building d2b3ya2.3.pdb
10/01/2012 08:42:43 : INFO  : Building d1acoa2.4.pdb
10/01/2012 08:42:59 : INFO  : Building d1l5ja3.5.pdb
10/01/2012 08:43:15 : INFO  : Building c1l5jB_.6.pdb
10/01/2012 08:43:31 : INFO  : Building d2b3ya1.7.pdb
10/01/2012 08:43:47 : INFO  : Building d1acoa1.8.pdb
10/01/2012 08:44:02 : INFO  : Building d1v7la_.9.pdb
10/01/2012 08:44:18 : INFO  : Building c2pkpA_.10.pdb
10/01/2012 08:44:35 : INFO  : Building d1l5ja2.11.pdb
10/01/2012 08:44:51 : INFO  : Building c2hcuA_.12.pdb
10/01/2012 08:45:06 : INFO  : Building c3q3wB_.13.pdb
10/01/2012 08:45:20 : INFO  : Building c3h5jA_.14.pdb
10/01/2012 08:45:36 : INFO  : Building d1cf1a1.15.pdb
10/01/2012 08:45:52 : INFO  : Building d1g4ma1.16.pdb
10/01/2012 08:46:09 : INFO  : Building d2r4qa1.17.pdb
10/01/2012 08:46:27 : INFO  : Building c3c52B_.18.pdb
10/01/2012 08:46:44 : INFO  : Building c2iswB_.19.pdb
10/01/2012 08:47:02 : INFO  : Building d1t3va_.20.pdb
10/01/2012 08:47:44 : INFO  : Finished HH model building
10/01/2012 08:47:46 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 08:48:39 : INFO  : html domain output complete ID 'b6ee1aed79cad8cc'
10/01/2012 11:48:08 : INFO  : Run end  : Tue Jan 10 11:48:07 GMT 2012
