18/01/2012 15:43:31 : INFO  : Run start: Wed Jan 18 15:43:30 GMT 2012
18/01/2012 15:43:36 : INFO  : Initialised job
18/01/2012 15:43:37 : INFO  : Renaming log file 'phyre2_20120118_154330.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/phyre_20120118_154330.log'
18/01/2012 15:43:39 : INFO  : Initialised job:
Sequence
>batch____
MPRLLTKRGCWITLAAAPFLLFLAAWGADKLWPLPLHEVNPARVVVAQDGTPLWRFADAD
GIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRVISGGSTLT
MQVARLLDPHPKTFGGKIRQLWRALQLEWHLSKREILTLYLNRAPFGGTLQGIGAASWAY
LGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAARNKVLERMAVQGVWSREQVKES
REEPIWLAPRQMPQLAPLFSRMMLGKSKSDKITTTLDAGLQRRLEELAQNWKGRLPPRSS
LAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLALDEGLIHP
ASLLQDVPRRTGDYRPGNFDSGFHGPISMSEALVRSLNLPAVQVLEAYGPKRFAAKLRNV
GLPLYLPNGAAPNLSLILGGAGAKLEDMAAAYTAFARHGKAGKLRLQPDDPLLERPLMSS
GAAWIIRRIMADEAQPLPDSALPRVAPLAWKTGTSYGYRDAWAIGVNARYVIGIWTGRPD
GTPVVGQFGFASAVPLLNQVNNILLSRSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNC
RRRLATWLLDGSQPPTLLLPEQEGINGIRFPIWLDENGKRVAADCPQARQEMINVWPLPL
EPWLPASERRAVRLPPASTSCPPYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSG
GAGERWWFLNGEPLTERGRNVTLHLTDKGDYQLLVMDDVGQIATVKFVMQ

18/01/2012 15:43:41 : INFO  : Checked sequence
18/01/2012 15:43:44 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 15:43:45 : INFO  : PSI-BLAST 3 iterations
18/01/2012 15:47:37 : INFO  : PSI-BLAST 5 iterations
18/01/2012 15:53:25 : INFO  : Finished PSI-BLAST
18/01/2012 15:53:27 : INFO  : Running Buildali to generate a3m file
18/01/2012 16:25:03 : INFO  : Converting to HMM
18/01/2012 16:25:30 : INFO  : Calibrating HMM
18/01/2012 16:25:55 : INFO  : Searching HMM database
18/01/2012 16:43:47 : INFO  : Finished buildali
18/01/2012 16:43:48 : INFO  : Predicting secondary structure
18/01/2012 16:43:53 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 16:43:54 : INFO  : Predicting Disordered regions
18/01/2012 16:43:56 : INFO  : Predicted Disorder (Disopred)
18/01/2012 16:43:57 : INFO  : Running memsat_svm check
18/01/2012 16:45:56 : INFO  : Globular protein
18/01/2012 16:45:56 : INFO  : Predicted Transmembrane (memsat_svm) ID 'b636f3932749a5f4'
18/01/2012 16:45:57 : INFO  : Initialising fold library search
18/01/2012 16:45:59 : INFO  : Initialised search input
18/01/2012 16:46:00 : INFO  : Building Ensemble models
18/01/2012 16:46:03 : INFO  : Building hh.c3dwkC_.model.1.pdb
18/01/2012 16:46:11 : INFO  : Building hh.c3fwlA_.model.2.pdb
18/01/2012 16:46:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/hh.c3fwlA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/c3fwlA_.2.pdb
18/01/2012 16:46:22 : INFO  : Building hh.c2olvA_.model.3.pdb
18/01/2012 16:46:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/hh.c2olvA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/c2olvA_.3.pdb
18/01/2012 16:46:31 : INFO  : Building hh.c3udiA_.model.4.pdb
18/01/2012 16:46:37 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/hh.c3udiA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/c3udiA_.4.pdb
18/01/2012 16:46:40 : INFO  : Building hh.c3pe9D_.model.5.pdb
18/01/2012 16:46:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/hh.c3pe9D_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/c3pe9D_.85.pdb
18/01/2012 16:46:49 : INFO  : Building hh.c3pe9B_.model.6.pdb
18/01/2012 16:46:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/hh.c3pe9B_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/c3pe9B_.90.pdb
18/01/2012 16:46:59 : INFO  : Building hh.c2e7cA_.model.7.pdb
18/01/2012 16:47:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/hh.c2e7cA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/b636f3932749a5f4/c2e7cA_.128.pdb
18/01/2012 16:47:09 : INFO  : Building c3dwkC_.1.pdb
18/01/2012 16:47:18 : INFO  : Building c3fwlA_.2.pdb
18/01/2012 16:47:26 : INFO  : Building c2olvA_.3.pdb
18/01/2012 16:47:34 : INFO  : Building c3udiA_.4.pdb
18/01/2012 16:47:41 : INFO  : Building c2jciA_.5.pdb
18/01/2012 16:47:49 : INFO  : Building c2bg1A_.6.pdb
18/01/2012 16:47:57 : INFO  : Building d2bg1a1.7.pdb
18/01/2012 16:48:04 : INFO  : Building c2wadB_.8.pdb
18/01/2012 16:48:13 : INFO  : Building d2c5wb1.9.pdb
18/01/2012 16:48:21 : INFO  : Building d2olua2.10.pdb
18/01/2012 16:48:28 : INFO  : Building c1pmdA_.11.pdb
18/01/2012 16:48:34 : INFO  : Building c3pbqA_.12.pdb
18/01/2012 16:48:43 : INFO  : Building c3lo7A_.13.pdb
18/01/2012 16:48:51 : INFO  : Building c3equB_.14.pdb
18/01/2012 16:48:59 : INFO  : Building c3ue3A_.15.pdb
18/01/2012 16:49:06 : INFO  : Building c3oc2A_.16.pdb
18/01/2012 16:49:14 : INFO  : Building d2olua1.17.pdb
18/01/2012 16:49:22 : INFO  : Building c1qmfA_.18.pdb
18/01/2012 16:49:30 : INFO  : Building c3hzsA_.19.pdb
18/01/2012 16:49:38 : INFO  : Building d1pyya4.20.pdb
18/01/2012 16:51:07 : INFO  : Finished HH model building
18/01/2012 16:51:08 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 16:52:03 : INFO  : html domain output complete ID 'b636f3932749a5f4'
18/01/2012 21:49:16 : INFO  : Run end  : Wed Jan 18 21:49:15 GMT 2012
