10/01/2012 11:00:05 : INFO  : Run start: Tue Jan 10 11:00:05 GMT 2012
10/01/2012 11:00:07 : INFO  : Initialised job
10/01/2012 11:00:07 : INFO  : Renaming log file 'phyre2_20120110_110005.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/b5b984b7bb33ab28/phyre_20120110_110005.log'
10/01/2012 11:00:07 : INFO  : Initialised job:
Sequence
>batch____
MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVVGHRESSVPFSYYDNQQ
KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVER
QKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTSGTTSEVLLNKLNEEQKMNMR
IISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEIVGKPQSQEAYGCMLRK
DDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMKALFKEPNDKA
LN

10/01/2012 11:00:08 : INFO  : Checked sequence
10/01/2012 11:00:09 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 11:00:09 : INFO  : PSI-BLAST 3 iterations
10/01/2012 11:02:02 : INFO  : PSI-BLAST 5 iterations
10/01/2012 11:04:48 : INFO  : Finished PSI-BLAST
10/01/2012 11:04:48 : INFO  : Running Buildali to generate a3m file
10/01/2012 11:35:01 : INFO  : Converting to HMM
10/01/2012 11:35:09 : INFO  : Calibrating HMM
10/01/2012 11:35:22 : INFO  : Searching HMM database
10/01/2012 11:42:10 : INFO  : Finished buildali
10/01/2012 11:42:10 : INFO  : Predicting secondary structure
10/01/2012 11:42:13 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 11:42:15 : INFO  : Predicting Disordered regions
10/01/2012 11:42:16 : INFO  : Predicted Disorder (Disopred)
10/01/2012 11:42:17 : INFO  : Running memsat_svm check
10/01/2012 11:44:24 : INFO  : Globular protein
10/01/2012 11:44:24 : INFO  : Predicted Transmembrane (memsat_svm) ID 'b5b984b7bb33ab28'
10/01/2012 11:44:25 : INFO  : Initialising fold library search
10/01/2012 11:44:26 : INFO  : Initialised search input
10/01/2012 11:44:26 : INFO  : Building Ensemble models
10/01/2012 11:44:28 : INFO  : Building hh.c2vhaB_.model.1.pdb
10/01/2012 11:44:33 : INFO  : Building c2vhaB_.1.pdb
10/01/2012 11:44:40 : INFO  : Building c3hv1A_.2.pdb
10/01/2012 11:44:45 : INFO  : Building c2ylnA_.3.pdb
10/01/2012 11:44:51 : INFO  : Building c2ieeB_.4.pdb
10/01/2012 11:44:56 : INFO  : Building c3k4uA_.5.pdb
10/01/2012 11:45:02 : INFO  : Building c3g41A_.6.pdb
10/01/2012 11:45:08 : INFO  : Building c1xt8B_.7.pdb
10/01/2012 11:45:13 : INFO  : Building c2v25B_.8.pdb
10/01/2012 11:45:19 : INFO  : Building c2yjpB_.9.pdb
10/01/2012 11:45:25 : INFO  : Building d1hsla_.10.pdb
10/01/2012 11:45:30 : INFO  : Building c3kbrA_.11.pdb
10/01/2012 11:45:36 : INFO  : Building d1xt8a1.12.pdb
10/01/2012 11:45:44 : INFO  : Building c2q89A_.13.pdb
10/01/2012 11:45:49 : INFO  : Building d1lsta_.14.pdb
10/01/2012 11:45:55 : INFO  : Building c3delC_.15.pdb
10/01/2012 11:46:01 : INFO  : Building c2q2aD_.16.pdb
10/01/2012 11:46:07 : INFO  : Building c3h7mA_.17.pdb
10/01/2012 11:46:13 : INFO  : Building c2o1mB_.18.pdb
10/01/2012 11:46:18 : INFO  : Building c3i6vA_.19.pdb
10/01/2012 11:46:24 : INFO  : Building c3r39A_.20.pdb
10/01/2012 11:46:37 : INFO  : Finished HH model building
10/01/2012 11:46:37 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 11:47:14 : INFO  : html domain output complete ID 'b5b984b7bb33ab28'
10/01/2012 12:35:05 : INFO  : Run end  : Tue Jan 10 12:35:05 GMT 2012
