Phyre 2 Results for P0A7R5

Email | l.a.kelley@imperial.ac.uk
Description | P0A7R5
Date | Thu Jan 5 11:06:06 GMT 2012
Unique Job ID | b5776b7bd06f9eaa

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2qalj1 |
|  | 100.0 | 100 | Fold:Ferredoxin-like Superfamily:Ribosomal protein S10 Family:Ribosomal protein S10
2 | c3bbnJ_ |
|  | 100.0 | 54 | PDB header:ribosome Chain: J: PDB Molecule:ribosomal protein s10; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
3 | d2uubj1 |
|  | 100.0 | 55 | Fold:Ferredoxin-like Superfamily:Ribosomal protein S10 Family:Ribosomal protein S10
4 | c2xznJ_ |
|  | 100.0 | 28 | PDB header:ribosome Chain: J: PDB Molecule:ribosomal protein s10 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
5 | c2zkqj_ |
|  | 100.0 | 27 | PDB header:ribosomal protein/rna Chain: J: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
6 | c1s1hJ_ |
|  | 100.0 | 25 | PDB header:ribosome Chain: J: PDB Molecule:40s ribosomal protein s20; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
7 | c3iz6J_ |
|  | 100.0 | 27 | PDB header:ribosome Chain: J: PDB Molecule:40s ribosomal protein s20 (s10p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
8 | c3r2cJ_ |
|  | 99.9 | 55 | PDB header:transcription/rna Chain: J: PDB Molecule:30s ribosomal protein s10; PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
9 | d1xbpg1 |
|  | 33.6 | 29 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein L11, C-terminal domain Family:Ribosomal protein L11, C-terminal domain
10 | d1fnoa3 |
|  | 19.9 | 19 | Fold:Ferredoxin-like Superfamily:Bacterial exopeptidase dimerisation domain Family:Bacterial exopeptidase dimerisation domain
11 | d1hc8a_ |
|  | 15.5 | 37 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein L11, C-terminal domain Family:Ribosomal protein L11, C-terminal domain
12 | d1mmsa1 |
|  | 15.2 | 37 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein L11, C-terminal domain Family:Ribosomal protein L11, C-terminal domain
13 | c1s1iK_ |
|  | 12.6 | 37 | PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l12; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1i,4 contains 60s subunit. the 40s ribosomal subunit is in file5 1s1h.
14 | c1vq8I_ |
|  | 11.4 | 26 | PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l11p; PDBTitle: the structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound2 to the large ribosomal subunit of haloarcula marismortui
15 | d1dbda_ |
|  | 10.8 | 12 | Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain
16 | c2kl8A_ |
|  | 10.3 | 22 | PDB header:de novo protein Chain: A: PDB Molecule:or15; PDBTitle: solution nmr structure of de novo designed ferredoxin-like2 fold protein, northeast structural genomics consortium3 target or15
17 | c2zkri_ |
|  | 9.8 | 32 | PDB header:ribosomal protein/rna Chain: I: PDB Molecule:rna expansion segment es15 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
18 | c1s6xA_ |
|  | 9.4 | 36 | PDB header:toxin Chain: A: PDB Molecule:kvap channel; PDBTitle: solution structure of vstx
19 | c2yqrA_ |
|  | 8.5 | 17 | PDB header:rna binding protein Chain: A: PDB Molecule:kiaa0907 protein; PDBTitle: solution structure of the kh domain in kiaa0907 protein
20 | c1jqmA_ |
|  | 8.2 | 37 | PDB header:ribosome Chain: A: PDB Molecule:50s ribosomal protein l11; PDBTitle: fitting of l11 protein and elongation factor g (ef-g) in2 the cryo-em map of e. coli 70s ribosome bound with ef-g,3 gdp and fusidic acid
21 | d1a7ge_ |
| not modelled | 7.8 | 16 | Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain
22 | c2vhmI_ |
| not modelled | 7.8 | 33 | PDB header:ribosome Chain: I: PDB Molecule:50s ribosomal protein l11; PDBTitle: structure of pdf binding helix in complex with the ribosome2 (part 1 of 4)
23 | d1f9fa_ |
| not modelled | 7.7 | 8 | Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain
24 | c3izcn_ |
| not modelled | 7.6 | 24 | PDB header:ribosome Chain: N: PDB Molecule:60s ribosomal protein rpl14 (l14e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
25 | c3bboK_ |
| not modelled | 7.6 | 32 | PDB header:ribosome Chain: K: PDB Molecule:ribosomal protein l11; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome
26 | c3ai4A_ |
| not modelled | 7.3 | 20 | PDB header:fluorescent protein, replication Chain: A: PDB Molecule:yeast enhanced green fluorescent protein, dna polymerase PDBTitle: crystal structure of yeast enhanced green fluorescent protein - mouse2 polymerase iota ubiquitin binding motif fusion protein
27 | d1r8ha_ |
| not modelled | 7.1 | 8 | Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain
28 | d2q79a1 |
| not modelled | 7.1 | 15 | Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain
29 | c3lpeF_ |
| not modelled | 6.4 | 38 | PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
30 | d1vqoi1 |
| not modelled | 6.3 | 26 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Ribosomal protein L11, C-terminal domain Family:Ribosomal protein L11, C-terminal domain
31 | c2ko4A_ |
| not modelled | 6.3 | 0 | PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15; PDBTitle: complex structure of the activation domain of gcn4 bound to the2 mediator co-activator domain of gal11/med15
32 | d1yvua2 |
| not modelled | 6.3 | 7 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:PIWI domain
33 | c2hxgB_ |
| not modelled | 6.0 | 12 | PDB header:isomerase Chain: B: PDB Molecule:l-arabinose isomerase; PDBTitle: crystal structure of mn2+ bound ecai
34 | d1iwga2 |
| not modelled | 5.8 | 15 | Fold:Ferredoxin-like Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
35 | d1vqoe2 |
| not modelled | 5.4 | 17 | Fold:Ribosomal protein L6 Superfamily:Ribosomal protein L6 Family:Ribosomal protein L6
36 | c4a1eE_ |
| not modelled | 5.4 | 21 | PDB header:ribosome Chain: E: PDB Molecule:60s ribosomal protein l9; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1