358 c1nijA_ Probab=89.23   E-value=1.4  Score=22.00  Aligned_columns=161  Identities=12%

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCCCCCCHHHCCCEECCCCCEECCCCCCCCC
Q ss_conf             99974888887227999999999843897899988899988466708886333333111110001079433545555667
Q batch____       110 IAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHMAPIMSHGLATNSIGYLVTD  189 (369)
Q Consensus       110 iav~s~KGGvGKTT~a~nLA~~La~~g~~VlliD~D~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (369)
                      |.+.+|==|.||||+--+|...  ..|.|+++|=.|...-++...+                 ....+............
T Consensus         5 v~iitGfLGaGKTTll~~ll~~--~~~~~~avi~Nefg~~~iD~~l-----------------l~~~~~~v~~l~~GCiC   65 (317)
T c1nijA_           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDDQL-----------------IGDRATQIKTLTNGCIC   65 (317)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCCSCCEEEEE-----------------ECTTSCEEEEETTSCEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHC--CCCCEEEEEEECCCCCCHHHHH-----------------HHHCCCEEEEECCCCEE
T ss_conf             8998089888988999999842--6997389997166444205889-----------------84079729997799542


Q ss_pred             CCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH-------HHCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf             430000000027999999988620458879997888688537889999-------8539048950377888999999999
Q batch____       190 DNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQN-------IPVTGAVVVTTPQDIALIDAKKGIV  262 (369)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~l~~~~~~~~D~iiiD~ppg~~~~~l~~~~l-------~~ad~viiv~~p~~~s~~~~~~~~~  262 (369)
                      ......-.......+.+..  .....+|+++|.+. |.++..--...+       ....---+++--+........+...
T Consensus        66 C~~~~~~~~~l~~l~~~~~--~~~~~~d~i~IE~s-G~a~p~~i~~~l~~~~~l~~~~~l~~vi~vvD~~~~~~~~~~~~  142 (317)
T c1nijA_          66 CSRSNELEDALLDLLDNLD--KGNIQFDRLVIECT-GMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT  142 (317)
T ss_dssp             ECTTSCHHHHHHHHHHHHH--HTSCCCSEEEEEEE-TTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCH
T ss_pred             CCCHHHHHHHHHHHHHHHC--CCCCCCCEEEEECC-CCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECHHHHHHHHHHH
T ss_conf             1324778999999998412--55468668998088-75798999988630820113089801789974026777663225


Q ss_pred             HHHHCCCCEEEEEEECCCCCCCCHHHHHHH
Q ss_conf             999739982499984332455303679998
Q batch____       263 MFEKVEVPVLGIVENMSVHICSNCGHHEPI  292 (369)
Q Consensus       263 ~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~  292 (369)
                      .+...=...-.+++|+.+.......-...+
T Consensus       143 ~~~~Qi~~Ad~ivlnk~D~~~~~~~i~~~i  172 (317)
T c1nijA_         143 IAQSQVGYADRILLTKTDVAGEAEKLHERL  172 (317)
T ss_dssp             HHHHHHHTCSEEEEECTTTCSCTHHHHHHH
T ss_pred             HHHHHHHHCCEEEEECCCCCCHHHHHHHHH
T ss_conf             564453107789960556689899999999