BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (608 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P04993 Exodeoxyribonuclease V alpha chain n=123 Tax=Ent... 1245 0.0 UniRef50_A7FFE8 Exodeoxyribonuclease V, alpha subunit n=30 Tax=E... 633 e-180 UniRef50_C4K847 Exonuclease V (RecBCD complex), alpha chain n=18... 576 e-163 UniRef50_A7K3N3 Exodeoxyribonuclease V alpha chain n=60 Tax=Gamm... 508 e-142 UniRef50_D0YW55 Exodeoxyribonuclease V alpha chain n=3 Tax=Gamma... 507 e-142 UniRef50_D0ICR8 Exodeoxyribonuclease V alpha chain n=1 Tax=Grimo... 502 e-140 UniRef50_A0KQ57 Exodeoxyribonuclease V, alpha subunit n=10 Tax=G... 478 e-133 UniRef50_Q2BKD7 Exodeoxyribonuclease V alpha chain n=1 Tax=Neptu... 464 e-129 UniRef50_C4L7B4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=To... 460 e-128 UniRef50_A6W0A8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ma... 454 e-126 UniRef50_Q1LST7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ba... 441 e-122 UniRef50_A4VRQ4 Exodeoxyribonuclease V alpha chain n=2 Tax=Prote... 439 e-121 UniRef50_Q2LTC7 Exodeoxyribonuclease V alpha chain n=1 Tax=Syntr... 437 e-121 UniRef50_B9M4M2 Exodeoxyribonuclease V, alpha subunit n=8 Tax=De... 420 e-116 UniRef50_Q1QYD2 DNA helicase/exodeoxyribonuclease V, alpha subun... 417 e-115 UniRef50_A1S6V1 Exodeoxyribonuclease V n=1 Tax=Shewanella amazon... 417 e-115 UniRef50_Q1N2Q9 Exodeoxyribonuclease V alpha chain n=1 Tax=Berma... 407 e-112 UniRef50_A1SUW2 DNA helicase/exodeoxyribonuclease V, alpha subun... 405 e-111 UniRef50_A4JS83 DNA helicase/exodeoxyribonuclease V, alpha subun... 398 e-109 UniRef50_C0QI06 RecD2 n=2 Tax=Desulfobacterium autotrophicum HRM... 398 e-109 UniRef50_A3YGD9 Exodeoxyribonuclease V alpha chain n=1 Tax=Marin... 396 e-108 UniRef50_C1D6T5 Exonuclease V alpha subunit RecD n=1 Tax=Laribac... 392 e-107 UniRef50_A1TWJ9 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Ma... 392 e-107 UniRef50_Q0VNI0 Exodeoxyribonuclease V alpha chain n=1 Tax=Alcan... 390 e-107 UniRef50_B8FB95 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 390 e-107 UniRef50_A8FUM3 Exodeoxyribonuclease V n=7 Tax=Shewanella RepID=... 390 e-107 UniRef50_Q7VRF0 Exonuclease V, alpha chain n=2 Tax=Candidatus Bl... 385 e-105 UniRef50_A9L0I2 Exodeoxyribonuclease V, alpha subunit n=12 Tax=S... 385 e-105 UniRef50_Q89AB2 Exodeoxyribonuclease V alpha chain n=1 Tax=Buchn... 382 e-104 UniRef50_Q02HF8 Exodeoxyribonuclease V alpha chain n=27 Tax=Bact... 382 e-104 UniRef50_Q3IJ15 Exonuclease V, alpha chain with recC and recD: 5... 370 e-101 UniRef50_B4X4Z2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 369 e-100 UniRef50_B5EPU7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Ac... 368 e-100 UniRef50_C0N790 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Me... 364 6e-99 UniRef50_B3ECZ3 Exodeoxyribonuclease V, alpha subunit n=7 Tax=Ch... 362 3e-98 UniRef50_A8ZX10 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 362 3e-98 UniRef50_A3MYX5 Exodeoxyribonuclease V alpha chain n=11 Tax=Past... 359 2e-97 UniRef50_C5CL22 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Be... 357 5e-97 UniRef50_Q15V09 DNA helicase/exodeoxyribonuclease V, alpha subun... 357 6e-97 UniRef50_B5JRL2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=ga... 355 4e-96 UniRef50_Q2SQD7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ha... 354 6e-96 UniRef50_D0IXL7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Co... 354 7e-96 UniRef50_C3X2X3 DNA helicase n=2 Tax=Oxalobacter formigenes RepI... 352 2e-95 UniRef50_Q5QUQ9 ATP-dependent exoDNAse (Exonuclease V), alpha su... 348 2e-94 UniRef50_C7LVF6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 345 4e-93 UniRef50_P45158 Exodeoxyribonuclease V alpha chain n=19 Tax=Past... 342 2e-92 UniRef50_B1XZ26 Exodeoxyribonuclease V, alpha subunit n=4 Tax=ce... 341 4e-92 UniRef50_A4B916 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Re... 339 1e-91 UniRef50_D1T987 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Bu... 337 1e-90 UniRef50_A3WKH6 ATP-dependent exoDNAse (Exonuclease V), alpha su... 332 4e-89 UniRef50_Q0AAH8 DNA helicase/exodeoxyribonuclease V, alpha subun... 326 2e-87 UniRef50_Q7NQR4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 323 1e-86 UniRef50_Q3B471 DNA helicase/exodeoxyribonuclease V, alpha subun... 322 2e-86 UniRef50_Q12LP3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Sh... 321 6e-86 UniRef50_C1SHH8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 320 7e-86 UniRef50_A6DNF1 Exonuclease V (RecBCD complex), alpha chain n=1 ... 318 4e-85 UniRef50_A4SEL8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 318 4e-85 UniRef50_B2JKV2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Bu... 314 7e-84 UniRef50_C5SAK6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 309 2e-82 UniRef50_Q480P0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Co... 301 6e-80 UniRef50_B0UUC7 Exodeoxyribonuclease V, alpha subunit n=9 Tax=ce... 298 4e-79 UniRef50_Q1NL94 Exodeoxyribonuclease V, alpha subunit n=3 Tax=De... 293 1e-77 UniRef50_C6NU54 Exodeoxyribonuclease V alpha chain n=1 Tax=Acidi... 292 2e-77 UniRef50_A1KCB0 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 291 5e-77 UniRef50_C7PDT2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 289 2e-76 UniRef50_Q8K9A8 Exodeoxyribonuclease V alpha chain n=4 Tax=Buchn... 288 6e-76 UniRef50_D0KVH2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ha... 286 2e-75 UniRef50_C1ACJ0 Exodeoxyribonuclease V alpha subunit n=1 Tax=Gem... 280 9e-74 UniRef50_D1N1Q4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Vi... 271 5e-71 UniRef50_Q6ANK0 Related to exodeoxyribonuclease V, alpha chain n... 261 5e-68 UniRef50_C1AXR1 Exodeoxyribonuclease V alpha chain n=5 Tax=Nocar... 257 9e-67 UniRef50_Q0BMQ9 Exodeoxyribonuclease V n=20 Tax=Francisella RepI... 256 2e-66 UniRef50_Q057F4 Exodeoxyribonuclease V, a chain n=1 Tax=Buchnera... 254 5e-66 UniRef50_C0VHS0 Exonuclease V alpha subunit n=7 Tax=Acinetobacte... 254 6e-66 UniRef50_A5WER9 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ps... 252 2e-65 UniRef50_UPI0001C3224F exodeoxyribonuclease V, alpha subunit n=2... 251 7e-65 UniRef50_Q6FF15 Exonuclease V, alpha subunit n=11 Tax=Acinetobac... 248 5e-64 UniRef50_Q8PEL4 Exodeoxyribonuclease V alpha chain n=1 Tax=Xanth... 246 2e-63 UniRef50_B2I7Y3 Exodeoxyribonuclease V, alpha subunit n=10 Tax=X... 245 3e-63 UniRef50_B4RTM2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 245 4e-63 UniRef50_A5EVY1 Exonuclease V, alpha subunit n=1 Tax=Dichelobact... 243 1e-62 UniRef50_C8XGW8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Na... 242 2e-62 UniRef50_D2U880 Probable exodeoxyribonuclease v, alpha subunit p... 241 8e-62 UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ac... 240 1e-61 UniRef50_P96919 Exodeoxyribonuclease V alpha chain n=27 Tax=Acti... 237 1e-60 UniRef50_C4GL20 Putative uncharacterized protein n=1 Tax=Kingell... 233 2e-59 UniRef50_D0L8X2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Co... 231 6e-59 UniRef50_UPI0001AEC2FF exodeoxyribonuclease V, alpha subunit n=1... 229 2e-58 UniRef50_B5JHU9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ve... 228 5e-58 UniRef50_C8PVE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=En... 223 1e-56 UniRef50_C0DUX7 Putative uncharacterized protein n=1 Tax=Eikenel... 223 1e-56 UniRef50_D0LWH5 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 223 2e-56 UniRef50_Q3BM41 Exodeoxyribonuclease V alpha chain n=8 Tax=Xanth... 221 7e-56 UniRef50_D0W4K0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ne... 221 9e-56 UniRef50_UPI0000E0F58B exodeoxyribonuclease V, alpha subunit n=1... 219 2e-55 UniRef50_C8NA26 Probable exonuclease V, alpha subunit n=1 Tax=Ca... 216 2e-54 UniRef50_A6W6P3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ki... 214 1e-53 UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=P... 212 3e-53 UniRef50_A2WB98 ATP-dependent exoDNAse (Exonuclease V) n=1 Tax=B... 211 5e-53 UniRef50_A3ETY4 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Le... 211 6e-53 UniRef50_C6HV36 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Le... 203 1e-50 UniRef50_UPI00016A6244 exodeoxyribonuclease V, beta subunit n=1 ... 201 1e-49 UniRef50_D1R7X6 Putative uncharacterized protein n=1 Tax=Parachl... 200 1e-49 UniRef50_Q140W3 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Bu... 199 2e-49 UniRef50_B4RLU6 RecD n=26 Tax=Neisseria RepID=B4RLU6_NEIG2 198 5e-49 UniRef50_Q2SUN7 Exodeoxyribonuclease V, alpha subunit n=27 Tax=P... 197 8e-49 UniRef50_Q6MFB5 Putative exodeoxyribonuclease V alpha chain recD... 196 3e-48 UniRef50_D1ULB4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Bu... 195 4e-48 UniRef50_A2C8A4 Possible exodeoxyribonuclease V 67 kD polypeptid... 190 2e-46 UniRef50_Q0IBA7 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Sy... 178 7e-43 UniRef50_Q05XZ5 Probable exodeoxyribonuclease V, alpha subunit R... 171 7e-41 UniRef50_B0SIS5 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Le... 169 3e-40 UniRef50_Q3B2W0 Helicase RecD/TraA n=19 Tax=Bacteria RepID=Q3B2W... 167 7e-40 UniRef50_Q6A849 Exonuclease V, alpha chain n=3 Tax=Propionibacte... 167 9e-40 UniRef50_B5IMW7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Cy... 165 5e-39 UniRef50_Q3AX67 DNA helicase/exodeoxyribonuclease V, alpha subun... 163 2e-38 UniRef50_Q6MDD6 Putative exodeoxyribonuclease V n=1 Tax=Candidat... 162 2e-38 UniRef50_D1R7Z3 Putative uncharacterized protein n=1 Tax=Parachl... 161 6e-38 UniRef50_Q46K41 DNA helicase/exodeoxyribonuclease V, alpha subun... 161 7e-38 UniRef50_B1I2W6 Helicase, RecD/TraA family n=1 Tax=Candidatus De... 161 8e-38 UniRef50_B3EIT2 Helicase, RecD/TraA family n=13 Tax=Bacteria Rep... 159 4e-37 UniRef50_A9BB03 Possible exodeoxyribonuclease V 67 kD polypeptid... 157 1e-36 UniRef50_C9RK23 Helicase, RecD/TraA family n=1 Tax=Fibrobacter s... 157 1e-36 UniRef50_D0LH80 Helicase, RecD/TraA family n=1 Tax=Haliangium oc... 156 2e-36 UniRef50_D1NBM8 Helicase, RecD/TraA family n=1 Tax=Victivallis v... 156 2e-36 UniRef50_B7KWK3 Helicase, RecD/TraA family n=16 Tax=Bacteria Rep... 156 2e-36 UniRef50_UPI00016C4690 helicase, RecD/TraA family protein n=1 Ta... 155 4e-36 UniRef50_A3Z806 Probable exodeoxyribonuclease V, alpha subunit R... 155 5e-36 UniRef50_C7RK95 Helicase, RecD/TraA family n=1 Tax=Candidatus Ac... 155 6e-36 UniRef50_Q04YR4 Exodeoxyribonuclease V, alpha subunit n=4 Tax=Le... 154 8e-36 UniRef50_Q7VBJ9 ATP-dependent exoDNAse alpha subunit n=1 Tax=Pro... 153 2e-35 UniRef50_A4XG10 ATP-dependent DNA helicase, RecD/TraA family n=2... 153 2e-35 UniRef50_Q14LX3 Putative exodeoxyribonuclease v alpha subunit pr... 152 4e-35 UniRef50_C0AD34 Exodeoxyribonuclease V n=2 Tax=Verrucomicrobia R... 152 5e-35 UniRef50_C9RQA9 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succi... 152 5e-35 UniRef50_D1A5Y8 Helicase, RecD/TraA family n=15 Tax=Bacteria Rep... 151 6e-35 UniRef50_B0B9E0 Exodeoxyribonuclease V alpha chain n=15 Tax=Chla... 150 9e-35 UniRef50_C3RPY6 Exonuclease V subunit alpha n=1 Tax=Mollicutes b... 150 1e-34 UniRef50_B7J2I8 Exodeoxyribonuclease V, alpha subunit n=23 Tax=B... 149 2e-34 UniRef50_A3YYL0 UvrD/REP helicase-like protein n=1 Tax=Synechoco... 147 9e-34 UniRef50_A6GES1 Exodeoxyribonuclease V n=1 Tax=Plesiocystis paci... 147 9e-34 UniRef50_UPI0001B44E5F RecD/TraA family helicase n=1 Tax=Clostri... 147 1e-33 UniRef50_C7RH25 Helicase, RecD/TraA family n=4 Tax=Anaerococcus ... 146 2e-33 UniRef50_B2A0E3 Helicase, RecD/TraA family n=3 Tax=Bacteria RepI... 145 5e-33 UniRef50_D1PL62 Helicase, RecD/TraA family n=3 Tax=Ruminococcace... 144 8e-33 UniRef50_A5CCM9 Helicase RecD/TraA, ATP-dependent exoDNAse (Exon... 144 1e-32 UniRef50_Q04B55 ATP-dependent DNA helicase, RecD/TraA family n=2... 144 1e-32 UniRef50_A8ZLV4 Helicase, RecD/TraA family n=18 Tax=Cyanobacteri... 144 1e-32 UniRef50_D2S7J1 Helicase, RecD/TraA family n=15 Tax=Actinomyceta... 143 2e-32 UniRef50_D2B1Q1 Exodeoxyribonuclease V n=9 Tax=Actinomycetales R... 142 3e-32 UniRef50_B7J7Z5 Helicase, RecD/TraA family n=1 Tax=Acidithiobaci... 142 4e-32 UniRef50_D2AQX1 Exodeoxyribonuclease V n=1 Tax=Streptosporangium... 142 4e-32 UniRef50_C8P085 RecD/TraA family helicase n=1 Tax=Erysipelothrix... 142 4e-32 UniRef50_A6DHN1 ATP-dependent exoDNAse (Exonuclease V), alpha su... 142 5e-32 UniRef50_A6L5S1 ATP-dependent exonuclease V, alpha subunit-helic... 140 2e-31 UniRef50_A9KS02 Helicase, RecD/TraA family n=32 Tax=Bacteria Rep... 139 2e-31 UniRef50_A1HT63 Helicase, RecD/TraA family n=1 Tax=Thermosinus c... 138 6e-31 UniRef50_D2RL74 Helicase, RecD/TraA family n=2 Tax=Acidaminococc... 138 6e-31 UniRef50_C1MI09 Predicted protein n=1 Tax=Micromonas pusilla CCM... 138 7e-31 UniRef50_C8X8R3 Exodeoxyribonuclease V n=1 Tax=Nakamurella multi... 136 2e-30 UniRef50_D2S6B9 Exodeoxyribonuclease V n=1 Tax=Geodermatophilus ... 136 3e-30 UniRef50_C7Q0I8 Helicase, RecD/TraA family n=1 Tax=Catenulispora... 136 3e-30 UniRef50_A8SRT9 Putative uncharacterized protein n=1 Tax=Coproco... 134 9e-30 UniRef50_A5N3G4 Predicted exodeoxyribonuclease n=26 Tax=Clostrid... 134 1e-29 UniRef50_C3CTA5 Helicase RecD/TraA n=1 Tax=Bacillus thuringiensi... 132 3e-29 UniRef50_B0S3H7 ATP-dependent exodeoxyribonuclease alpha subunit... 132 3e-29 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 132 3e-29 UniRef50_Q1J056 Helicase RecD/TraA n=3 Tax=Deinococcus RepID=Q1J... 132 4e-29 UniRef50_B0P898 Putative uncharacterized protein n=3 Tax=Bacteri... 132 5e-29 UniRef50_C5SD04 Helicase, RecD/TraA family n=1 Tax=Allochromatiu... 130 1e-28 UniRef50_A8ZX97 Helicase, RecD/TraA family n=1 Tax=Desulfococcus... 130 1e-28 UniRef50_A6NZ80 Putative uncharacterized protein n=1 Tax=Bactero... 129 2e-28 UniRef50_UPI0001C37B34 RecD/TraA family helicase n=1 Tax=Ruminoc... 129 3e-28 UniRef50_C0QIP1 RecD3 n=1 Tax=Desulfobacterium autotrophicum HRM... 128 8e-28 UniRef50_C8PAU3 Exodeoxyribonuclease V alpha subunit n=1 Tax=Lac... 128 8e-28 UniRef50_A6TL79 Helicase, RecD/TraA family n=35 Tax=Bacteria Rep... 127 2e-27 UniRef50_A4S3Z4 Predicted protein (Fragment) n=37 Tax=Eukaryota ... 127 2e-27 UniRef50_Q8R8A3 ATP-dependent exoDNAse (Exonuclease V), alpha su... 126 2e-27 UniRef50_A2BRT1 Possible exodeoxyribonuclease V 67 kD polypeptid... 126 2e-27 UniRef50_Q3AB49 Helicase, RecD/TraA family n=1 Tax=Carboxydother... 126 2e-27 UniRef50_A8SM75 Putative uncharacterized protein n=1 Tax=Parvimo... 126 3e-27 UniRef50_C9LLQ3 Helicase, RecD/TraA family n=1 Tax=Dialister inv... 125 4e-27 UniRef50_B4VXL3 Putative uncharacterized protein n=1 Tax=Microco... 125 6e-27 UniRef50_Q310C7 ATP-dependent DNA helicase, RecD/TraA family n=4... 124 8e-27 UniRef50_Q2LTP5 Exodeoxyribonuclease V alpha chain n=22 Tax=Bact... 124 1e-26 UniRef50_D1VRZ7 Helicase, RecD/TraA family n=1 Tax=Peptoniphilus... 124 2e-26 UniRef50_Q6F1E4 Exodeoxyribonuclease V n=1 Tax=Mesoplasma florum... 122 3e-26 UniRef50_A9NFP8 ATP-dependent exoDNAse (Exonuclease V), alpha su... 122 3e-26 UniRef50_B2A8J3 Helicase, RecD/TraA family n=2 Tax=Clostridia Re... 122 4e-26 UniRef50_B0MLK7 Putative uncharacterized protein n=1 Tax=Eubacte... 122 4e-26 UniRef50_UPI00016C0EC6 helicase, RecD/TraA family protein n=1 Ta... 122 4e-26 UniRef50_D1BM66 Helicase, RecD/TraA family n=3 Tax=Veillonella R... 121 6e-26 UniRef50_A0LD23 Helicase, RecD/TraA family n=1 Tax=Magnetococcus... 121 8e-26 UniRef50_B0TIF8 Exodeoxyribonuclease V, alpha chain, RecD n=1 Ta... 121 8e-26 UniRef50_D1U587 Helicase, RecD/TraA family n=2 Tax=Desulfovibrio... 120 1e-25 UniRef50_C2E8D7 Exodeoxyribonuclease V alpha chain n=1 Tax=Lacto... 120 1e-25 UniRef50_C6VR87 Exodeoxyribonuclease V, alpha chain n=44 Tax=Bac... 120 1e-25 UniRef50_C6BXI3 Helicase, RecD/TraA family n=5 Tax=Desulfovibrio... 120 2e-25 UniRef50_Q314D9 ATP-dependent DNA helicase, RecD/TraA family n=1... 120 2e-25 UniRef50_A4JFN0 AAA ATPase n=1 Tax=Burkholderia vietnamiensis G4... 120 2e-25 UniRef50_Q04EW7 ATP-dependent DNA helicase, RecD/TraA family n=2... 119 3e-25 UniRef50_B8FBC1 Helicase, RecD/TraA family n=1 Tax=Desulfatibaci... 119 4e-25 UniRef50_C9KLF6 Helicase, RecD/TraA family n=3 Tax=Veillonellace... 119 4e-25 UniRef50_C5B4P9 Putative Helicase, RecD/TraA family n=1 Tax=Meth... 119 4e-25 UniRef50_Q1WTZ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Lacto... 119 5e-25 UniRef50_B8J4Q4 Helicase, RecD/TraA family n=9 Tax=Bacteria RepI... 118 6e-25 UniRef50_B1C665 Putative uncharacterized protein n=1 Tax=Anaerof... 118 7e-25 UniRef50_Q03EZ9 ATP-dependent DNA helicase, RecD/TraA family n=1... 118 7e-25 UniRef50_B1MY70 ATP-dependent exoDNAse (Exonuclease V), alpha su... 117 1e-24 UniRef50_C1XYZ4 Putative uncharacterized protein n=1 Tax=Meiothe... 117 1e-24 UniRef50_B8I4C3 Exonuclease V subunit alpha n=1 Tax=Clostridium ... 117 1e-24 UniRef50_B3E889 Exodeoxyribonuclease V n=2 Tax=Bacteria RepID=B3... 117 2e-24 UniRef50_Q2SS34 Helicase, RecD/TraA family, putative n=3 Tax=Myc... 117 2e-24 UniRef50_C2KY21 Possible exodeoxyribonuclease V alpha subunit n=... 116 2e-24 UniRef50_Q97JX9 Exodeoxyribonuclease V, Alpha subunit, RecD n=1 ... 115 5e-24 UniRef50_Q98PE1 EXODEOXYRIBONUCLEASE V ALPHA CHAIN n=1 Tax=Mycop... 115 6e-24 UniRef50_D2ELG1 RecD/TraA family helicase n=1 Tax=Pediococcus ac... 115 6e-24 UniRef50_Q6KIJ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Mycop... 115 7e-24 UniRef50_A5ZS54 Putative uncharacterized protein n=2 Tax=Clostri... 114 8e-24 UniRef50_C7H0P7 Helicase, RecD/TraA family n=1 Tax=Eubacterium s... 114 1e-23 UniRef50_C3RKU1 Exodeoxyribonuclease subunit V alpha n=4 Tax=Bac... 114 1e-23 UniRef50_O34481 Uncharacterized protein yrrC n=119 Tax=Bacillale... 114 1e-23 UniRef50_B0P921 Putative uncharacterized protein n=2 Tax=Clostri... 114 2e-23 UniRef50_C4V2J7 Exodeoxyribonuclease V alpha subunit n=1 Tax=Sel... 114 2e-23 UniRef50_C7IID4 Exonuclease V subunit alpha n=1 Tax=Clostridium ... 112 4e-23 UniRef50_D1T3Y7 Putative ATP-dependent exoDNAse (Exonuclease V),... 112 4e-23 UniRef50_B2JBK4 Exodeoxyribonuclease V, alpha chain n=2 Tax=Nost... 112 5e-23 UniRef50_C5V224 AAA ATPase n=1 Tax=Gallionella ferruginea ES-2 R... 112 5e-23 UniRef50_B7C7R4 Putative uncharacterized protein (Fragment) n=1 ... 111 6e-23 UniRef50_B1ZHR2 Exodeoxyribonuclease V n=1 Tax=Methylobacterium ... 110 1e-22 UniRef50_UPI0001C367B5 helicase, RecD/TraA family protein n=1 Ta... 109 3e-22 UniRef50_Q9Z7F4 Exodeoxyribonuclease V, Alpha n=3 Tax=Chlamydoph... 109 3e-22 UniRef50_C7IFQ7 AAA ATPase n=1 Tax=Clostridium papyrosolvens DSM... 108 4e-22 UniRef50_Q58914 Uncharacterized protein MJ1519 n=1 Tax=Methanoca... 108 6e-22 UniRef50_C0QEU8 RecD1 n=2 Tax=Desulfobacterales RepID=C0QEU8_DESAH 108 7e-22 UniRef50_A4VZ41 ATP-dependent exoDNAse (Exonuclease V), alpha su... 107 1e-21 UniRef50_Q039P4 ATP-dependent DNA helicase, RecD/TraA family n=9... 107 1e-21 UniRef50_C0XKM5 Exodeoxyribonuclease V alpha subunit n=3 Tax=Lac... 107 2e-21 UniRef50_C5V7K0 AAA ATPase n=1 Tax=Gallionella ferruginea ES-2 R... 106 3e-21 UniRef50_A5GUA1 Exodeoxyribonuclease V alpha chain n=1 Tax=Synec... 103 1e-20 UniRef50_A9VCH2 Predicted protein n=1 Tax=Monosiga brevicollis R... 103 2e-20 UniRef50_Q2J9N4 Exodeoxyribonuclease V n=5 Tax=Frankia RepID=Q2J... 103 2e-20 UniRef50_Q6MSW8 EXODEOXYRIBONUCLEASE V ALPHA CHAIN n=2 Tax=Mycop... 103 3e-20 UniRef50_B1YJE6 Helicase, RecD/TraA family n=2 Tax=Exiguobacteri... 102 3e-20 UniRef50_B1BD28 Exodeoxyribonuclease V, alpha subunit n=3 Tax=ro... 102 3e-20 UniRef50_Q2HYH7 Helicase n=4 Tax=Bacteria RepID=Q2HYH7_BACTT 102 4e-20 UniRef50_UPI0001C31D3E helicase, RecD/TraA family n=1 Tax=Conexi... 102 4e-20 UniRef50_A1U312 AAA ATPase n=1 Tax=Marinobacter aquaeolei VT8 Re... 102 5e-20 UniRef50_C9B1G0 Helicase RecD/TraA n=4 Tax=Enterococcus RepID=C9... 101 9e-20 UniRef50_Q4A5E7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=My... 101 1e-19 >UniRef50_P04993 Exodeoxyribonuclease V alpha chain n=123 Tax=Enterobacteriaceae RepID=EX5A_ECOLI Length = 608 Score = 1245 bits (3221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 608/608 (100%), Positives = 608/608 (100%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN Sbjct: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA Sbjct: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT Sbjct: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL Sbjct: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ Sbjct: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR Sbjct: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD Sbjct: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR Sbjct: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK Sbjct: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL Sbjct: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 Query: 601 AALFSSRE 608 AALFSSRE Sbjct: 601 AALFSSRE 608 >UniRef50_A7FFE8 Exodeoxyribonuclease V, alpha subunit n=30 Tax=Enterobacteriaceae RepID=A7FFE8_YERP3 Length = 657 Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust. Identities = 361/643 (56%), Positives = 444/643 (69%), Gaps = 49/643 (7%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN---EA 63 L +A + LRPLDVQF+ +AGD+ P + LAAA+LS + G GHVCLPL L+ Sbjct: 5 LAQAARDRLLRPLDVQFSRMIAGDDDPRLQLAAAILSAEVGAGHVCLPLRYLQPELLFGG 64 Query: 64 SHPLLATCVSEIG---ELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 P L+ + + + W + L + VS G +PTP++L +RLYL RMW E V Sbjct: 65 RQPDLSLALWQAAGSPDKAQWLQALQNAPVVSDGSQPTPLVLQQERLYLQRMWQYEGDVV 124 Query: 121 RFFNE----VNH----------AIEVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRR 165 +F +N A VDE+LL +TLD LF + E++WQKVAAAVA TRR Sbjct: 125 QFIASDSVFINRDSDFMTSKGIATSVDESLLRETLDALFGYAGSEVDWQKVAAAVAATRR 184 Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 ISVISGGPGTGKTTTVAKLL ALI+++ G+R RI+LAAPTGKAAARLTESLGKA+RQ L Sbjct: 185 ISVISGGPGTGKTTTVAKLLTALIRISQGQRLRIQLAAPTGKAAARLTESLGKAIRQFSL 244 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 TD+++K P+ ASTLHRLLG QP SQRLR+H GNPL+LDVLVVDEASM+DLPMM+RLI A Sbjct: 245 TDDERKLFPDQASTLHRLLGVQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMARLIAA 304 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV-------- 337 LP A+VIFLGDRDQLASVEAGAVLGDIC +A G++ +RA+QL++LTG + Sbjct: 305 LPAKAKVIFLGDRDQLASVEAGAVLGDICRFAELGYSEQRAQQLTQLTGYLLTNNALTSN 364 Query: 338 -----------------PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 P T +++A++RDSLCLL+KSYRF SGIGQLA A+N G+ Sbjct: 365 VLASNVLTNKALANKAQPDETYSDSANVRDSLCLLRKSYRFDEKSGIGQLALAVNAGEYR 424 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 +V ++D+E+ L EDY +LE GY YL+ + A A ++ AF YQL Sbjct: 425 QALSVLNSAYSDVERFPLADEEDYQVLLEACAVGYQHYLERVAALAPAAEVLAAFGRYQL 484 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHR--HPHSRWYEGRPVMIARNDSALGLFNGDI 498 LCALR GPFGV+GLNERIEQ + +K I R P RWY GRPVMI NDSALGLFNGDI Sbjct: 485 LCALRSGPFGVSGLNERIEQVLHRKGFIIRPSGPSGRWYVGRPVMIELNDSALGLFNGDI 544 Query: 499 GIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 GIAL +G RV+F +PDGNIKSVQPSRLP HET +AMTVHKSQGSEF+H AL+LP+ Sbjct: 545 GIALHDNEGELRVYFQLPDGNIKSVQPSRLPSHETAYAMTVHKSQGSEFEHTALVLPNTF 604 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 PV+TRELVYTA+TRAR+ L+LY + +LS AI T T R SGL Sbjct: 605 MPVLTRELVYTAITRARQHLTLYCSDAVLSHAIRTPTLRLSGL 647 >UniRef50_C4K847 Exonuclease V (RecBCD complex), alpha chain n=18 Tax=Enterobacteriaceae RepID=C4K847_HAMD5 Length = 628 Score = 576 bits (1485), Expect = e-163, Method: Compositional matrix adjust. Identities = 322/628 (51%), Positives = 425/628 (67%), Gaps = 33/628 (5%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN---EA 63 L +A++ K LR LDVQFA +A P + LA ALLS DAG GHVCLPL+RL + Sbjct: 5 LNQALDQKLLRFLDVQFAQIIAAHHSPLLQLACALLSSDAGAGHVCLPLARLAPEYFFDG 64 Query: 64 SHPLLATCVSEIGELQN---WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 HP LA + + N W +S V G PTP++L +RLYL RMW NE V Sbjct: 65 RHPELAEALWQAAGKPNKNAWLNAFQSSSLVGEGTSPTPLVLEKERLYLQRMWKNEGQVI 124 Query: 121 RFFNEVNHAIE------VDEALLAQTLDKLFPVSD-EINWQKVAAAVALTRRISVISGGP 173 +F ++ +++E DE L Q LD+LF ++ +IN+QKVAAAVA+T ++++ISGGP Sbjct: 125 QFISD--YSLEKMTYHKKDECRLKQILDQLFTSNESDINFQKVAAAVAITSKVAIISGGP 182 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GTGKTTTVAKLL ALI++A RI LAAPTGKAA RLT+SLG A R+L L+ + +R+ Sbjct: 183 GTGKTTTVAKLLTALIRLAGERTLRIELAAPTGKAAVRLTQSLGNAYRELSLSAGESRRL 242 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 PE A TLHRLLGA + R+H NPL LDVLVVDEASM+DLPM++RLIDALP+ A+VI Sbjct: 243 PEKACTLHRLLGAYSKGHQSRYHKNNPLDLDVLVVDEASMVDLPMLARLIDALPNSAQVI 302 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT--------HVPAGTGTEA 345 FLGDRDQLASVEAG+VLG+I + + G++ RA +L+RLTG H P Sbjct: 303 FLGDRDQLASVEAGSVLGEIGRFLSLGYSTSRAEELNRLTGYDLKGHPIEHFP---NLCV 359 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ---QDFTDIEKRLLQSGE 402 A + D LCLL K+YRF SGIG+LA A+N G+ ++ + + + DI + L + Sbjct: 360 AHVCDQLCLLNKNYRFDKKSGIGELAQAVNSGEHHKAHSILRDVNKKYVDIRQHALSDAK 419 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 DY +L++ +A Y YL+L++ +P+ I+ AFN YQLLCALR G FG+ GLN +IE+ + Sbjct: 420 DYQKLLKDCVAAYQPYLELIKQGKDPETILHAFNRYQLLCALRTGSFGLEGLNTQIEKTL 479 Query: 463 QQK--RKIHRHP-HSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGN 518 + + P ++ WY GRP+MI NDS+LGLFNGD+G+ L D RV+F DG+ Sbjct: 480 CHSGLLSLSQKPFNNSWYSGRPIMIECNDSSLGLFNGDLGMTLYDHSGALRVYFQFSDGH 539 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 IKSVQP+RLP H T +AMTVHKSQGSEF+H AL+LP TP+VTRELVYTA+TRAR++L+ Sbjct: 540 IKSVQPNRLPAHSTAYAMTVHKSQGSEFEHTALVLPDHFTPIVTRELVYTAITRARQKLT 599 Query: 579 LYADERILSAAIATRTERRSGLAALFSS 606 LY+ +++L+ AI T T+RRSGL A S Sbjct: 600 LYSTDKVLNHAILTPTQRRSGLVARLKS 627 >UniRef50_A7K3N3 Exodeoxyribonuclease V alpha chain n=60 Tax=Gammaproteobacteria RepID=A7K3N3_VIBSE Length = 715 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 271/480 (56%), Positives = 352/480 (73%), Gaps = 20/480 (4%) Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER-C 197 QTLD+L P+S +NWQKVAAAVALTRR +VISGGPGTGKTTTV KLLAALI+ A E+ Sbjct: 232 QTLDELVPLSACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNL 291 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 I+L APTGKAAARLTES+GKA+++LP++ E K +IP ++STLHRLLGA P S RH+ Sbjct: 292 TIKLVAPTGKAAARLTESIGKAVQELPVSPELKAKIPTESSTLHRLLGAIPNSAEFRHNK 351 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPLHLD+LV+DEASM+DLPMM +++DALP HAR+I LGD+DQLASVEAGAVLGDIC++ Sbjct: 352 QNPLHLDILVIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFH 411 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G+ E+A +++LTG A TG A+S+ DSLC+LQKSYRF + SGIGQLA A+N G Sbjct: 412 ALGYGKEQASAIAKLTGFDTLAHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSG 471 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL-QARAEPDL------ 430 +V V+ +DF+DIE L S + Y M++ + YGRYL + Q +P Sbjct: 472 SAASVDNVWARDFSDIEHFAL-SSQHYNQMMQTLVQEYGRYLKRIGQQETDPKTGEPESL 530 Query: 431 ------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 ++ FN+ +LLCA+REG FGVAGLN+RIE+ + RK+ + WY GRPVM+ Sbjct: 531 THKAKAVLDTFNQCRLLCAIREGDFGVAGLNQRIEKAL-AARKLIQVQDEIWYHGRPVMV 589 Query: 485 ARNDSALGLFNGDIGIAL--DRGQGTR--VWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 RND LGL+NGDIGI + D + R V+F +PDG++KSV PSR+PEHET +AMT+HK Sbjct: 590 TRNDHGLGLYNGDIGICMRDDSEEEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHK 649 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFD+ +ILP +P++TREL+YT +TRA++RL+LYA+ +L I +T R SGL Sbjct: 650 SQGSEFDYTLMILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTTRASGL 709 >UniRef50_D0YW55 Exodeoxyribonuclease V alpha chain n=3 Tax=Gammaproteobacteria RepID=D0YW55_LISDA Length = 707 Score = 507 bits (1305), Expect = e-142, Method: Compositional matrix adjust. Identities = 315/701 (44%), Positives = 412/701 (58%), Gaps = 110/701 (15%) Query: 12 EHKQLRPLDVQFALTVA----GDEHPAV----TLAAALLSHDAGEGHVCLPLSRLENNEA 63 E LR +D QFA VA + P V +LA+A LS + G GHVCLPL+ + Sbjct: 10 EQGVLRAIDSQFAKFVARSVTSIDTPEVVQLVSLASAWLSSELGRGHVCLPLTAEDQQSM 69 Query: 64 S----HPLLATCVSEI-----GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWC 114 H LA V ++ Q W E L+ S AVS G +PTP++L RLYLNR W Sbjct: 70 GMFGLHGELAQQVVQLLPEALHHPQCWPEVLIQSHAVSDGSQPTPLVLSDGRLYLNRYWQ 129 Query: 115 NERTVARFFNEVNHAIEVDEAL----------LAQTLDKLFP------------------ 146 E++VA + A VD A L Q LD+LFP Sbjct: 130 FEQSVAGRILAMATAKGVDTAAQALSSHHIDQLQQNLDQLFPRVYHYLLSSLQALRLGET 189 Query: 147 -------------------VSDEI---NWQKVAAAV------------------------ 160 V+D+I +W+++ A + Sbjct: 190 TRVDSEEARRLEVIDKLDIVADQISQLDWKQIDAVLAQAQTISDLQILDTLVPSSFCLNW 249 Query: 161 -------ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 ALTR+ +VISGGPGTGKTTTV KLLAAL+ I L APTGKAAARLT Sbjct: 250 QKVAAAVALTRQFAVISGGPGTGKTTTVTKLLAALVMENPQHIPNIMLVAPTGKAAARLT 309 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 ES+ A++ LP+TDE K IP +ST+HRLLGA PG RHH GNPLHLDVLVVDEASM Sbjct: 310 ESITNAVKSLPVTDEIKAHIPTQSSTIHRLLGAIPGRVDFRHHKGNPLHLDVLVVDEASM 369 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +DLPMM+RL++A+P HA++I LGD+DQLASVEAGAVLGDIC+++ ++ ++A LS+LT Sbjct: 370 VDLPMMARLLEAMPAHAKLILLGDKDQLASVEAGAVLGDICSFSALSYSKQQAEVLSQLT 429 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 G + + T ++ + D LC+LQKSYRF + SGIGQLA AIN G + V+ V+QQ F DI Sbjct: 430 GFDLSSNT-SKTNVVADCLCMLQKSYRFHALSGIGQLAKAINGGRENKVQAVWQQGFKDI 488 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 L S + Y +M+ + + Y YLD ++ P ++QAF + +LLCALREG FGV G Sbjct: 489 NFYPL-STDSYKSMINQIVMFYRNYLDAIEQSQSPREVLQAFAQVRLLCALREGDFGVVG 547 Query: 454 LNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGT 508 LN+RIE + + KI + WY GRP+MI++ND LGL+NGDIGIA+ D G+ Sbjct: 548 LNQRIEHELGRIGKI-KQSDETWYIGRPIMISQNDHGLGLYNGDIGIAMLEPNTDIAAGS 606 Query: 509 ----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 +V+F M DG +K PSRLPEHET +AMT+HKSQGSEF ++LP +P++TRE Sbjct: 607 TPRMKVYFEMSDGEVKGFLPSRLPEHETVYAMTIHKSQGSEFADTVMVLPKDYSPILTRE 666 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 LVYT VTRA+ RL LY + +++ I T+T R SGL+ L S Sbjct: 667 LVYTGVTRAKARLYLYGQQEVMARGIRTKTLRASGLSHLLS 707 >UniRef50_D0ICR8 Exodeoxyribonuclease V alpha chain n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0ICR8_VIBHO Length = 665 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 309/669 (46%), Positives = 402/669 (60%), Gaps = 66/669 (9%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSR 57 M + ++L + +R +D QF+ + GDE+ V AAL+S + G+G+VC+ LS Sbjct: 1 MAISEKLEALYKRNAIRAIDRQFSQFIGEQLGDENSPVVGWAALVSFELGKGNVCVDLSA 60 Query: 58 LENNEASH--PLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWC- 114 LE P + ++ + +N L AS V G +PTP++L G RLYL R W Sbjct: 61 LEGARLFDLMPAESASLAALMVPENALSMLSASPVVGDGSQPTPLVLSGSRLYLYRYWAA 120 Query: 115 -------------------NERTV-------------ARF--------------FNEVNH 128 N R+V AR+ F ++ Sbjct: 121 ECLVVSEIAKRSGELPLPMNLRSVLDGLFTPDVAFLRARYPQWTDEEKAAKLADFFDITD 180 Query: 129 AIEVDEALLAQTL-------DKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTT 179 + ++D L L D L V D +NWQKVAAAVAL+ R +VISGGPGTGKTT Sbjct: 181 SSQIDYHALQAALEAGVSDNDVLSHVPDGARLNWQKVAAAVALSSRFAVISGGPGTGKTT 240 Query: 180 TVAKLLAALIQMADGERC-RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TVAKLLAA++ +D I+L APTGKAA RLTES+GKA+ LP+TD +++IP AS Sbjct: 241 TVAKLLAAIVSSSDNPNGPEIKLVAPTGKAANRLTESIGKAVEALPVTDSVRRKIPAQAS 300 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLLGA P RHH GN LHLDVLVVDEASM+DLP+M+RL+ ALP+HARVI LGDR Sbjct: 301 TIHRLLGAIPNRVEFRHHQGNRLHLDVLVVDEASMVDLPLMARLLSALPEHARVILLGDR 360 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQLASVEAGAVLGDIC A GF+ RA+ LS LTG +P G A + DS+CLL+KS Sbjct: 361 DQLASVEAGAVLGDICLGAGQGFSPPRAKLLSALTGFVLPEAAGLPAVA--DSVCLLRKS 418 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 YRF + SG+GQLA AIN GD + V Q F DI L + + Y + A+ GY Y Sbjct: 419 YRFHAQSGVGQLAYAINAGDTRTLDRVIQSGFRDIALHELDT-DIYSEAIHLAVQGYRPY 477 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 L + P +++ F+E +LLCAL +GPFGV GLN IE+ + + + S +Y Sbjct: 478 LTAMVDGLPPRDVLRRFSECRLLCALSDGPFGVKGLNSVIEKALAKAGLVSPGEES-FYP 536 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 GRPVM+ +ND LGL+NGDIGI + + +G RV F M DG +++ PSRLPEH+T +AMT+ Sbjct: 537 GRPVMVTQNDHGLGLYNGDIGIVVKQEEGLRVVFEMADGTVRAFLPSRLPEHQTAYAMTI 596 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF H L+LP TPV+TRELVYT VTRA+ RL +YA L A+ + +R S Sbjct: 597 HKSQGSEFSHTILVLPPTPTPVMTRELVYTGVTRAKDRLDVYATRASLERAVKRKNQRFS 656 Query: 599 GLAALFSSR 607 GLA +R Sbjct: 657 GLADALRAR 665 >UniRef50_A0KQ57 Exodeoxyribonuclease V, alpha subunit n=10 Tax=Gammaproteobacteria RepID=A0KQ57_AERHH Length = 684 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 317/674 (47%), Positives = 397/674 (58%), Gaps = 99/674 (14%) Query: 15 QLRPLDVQFALTVAG-DEHPAVTLAAALLSHDAGEGHVCLPLSRLENN------------ 61 ++R LD+QFA VA P + L AAL + G GHVCLPL L ++ Sbjct: 18 RIRQLDLQFARLVADLGGSPELVLGAALACFELGRGHVCLPLEMLTHSGNEKGSLRPFGL 77 Query: 62 --EASHPLLATCVSEIGELQNWEECLLASQAV-SRGDEPT----PMILCGDRLYLNRMWC 114 + S LLA ++ + W S V S DE P+ L RLYL R Sbjct: 78 DPDQSRDLLA----DLADPARWPALFAESPLVGSEQDEGLAPRWPLRLWHGRLYLTRYHD 133 Query: 115 NERTVARF---------FNEVNHAI----------------------------------- 130 E VAR + E+ A+ Sbjct: 134 FELGVARHLRALSERAEWPEIAPALSRLFARDYGLVFAALLKARLAPDFSARHFTLKYLD 193 Query: 131 -----EVD----EALLAQT--------LDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 EVD E LLA LD L P + N QK+AAA A R +VISGGP Sbjct: 194 LVFPNEVDWLAIEGLLASAQAASDLSKLDALVPEALCCNGQKLAAATAAARPFAVISGGP 253 Query: 174 GTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GTGKTTTVAKLLA L++ + G+ IRL APTGKAAARLTES+G AL+ L L E + Sbjct: 254 GTGKTTTVAKLLAILVETGLQAGKAPAIRLVAPTGKAAARLTESIGSALQALDLPPEWVE 313 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 IP +A TLHRLLG PG + RHHAGNPLHLD+LVVDEASM+DLPMM+RL+DALP HAR Sbjct: 314 AIPTEAGTLHRLLGVIPGRSQFRHHAGNPLHLDLLVVDEASMVDLPMMARLLDALPSHAR 373 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV---PAGTGTEAASL 348 +I LGD+DQLASVEAGAVLGDIC++ G + +A LSR TG + PAG A++ Sbjct: 374 LILLGDKDQLASVEAGAVLGDICSFIEQGISPAQADWLSRQTGYRLQGSPAG-----ATV 428 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 RDSLCLL KS+RF SGIGQLA A N GD TAV++V+ F DI +GE Y A++ Sbjct: 429 RDSLCLLAKSWRFDQHSGIGQLARACNSGDATAVESVWGAGFADISLH-PWAGEAYDALI 487 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI 468 + +AGYG YL +A P + +AFN +Q+LCALR+GPFGV GLNER+E + + I Sbjct: 488 AQGVAGYGSYLKAARAGEAPAAVFKAFNSFQILCALRDGPFGVLGLNERLELALSRAGLI 547 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRL 527 WY GRPVM+ RND +GL+NGD+G+ L G +VWF PDG ++++ PSRL Sbjct: 548 AC--DGDWYAGRPVMVVRNDHGVGLYNGDMGLCLPDETGRLKVWFEQPDGTLRALLPSRL 605 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 P HET +AMT+HKSQGSEF H L+LP +P++TRELVYT +TRA+ RL LY D +L+ Sbjct: 606 PPHETVYAMTIHKSQGSEFAHTVLVLPDSPSPLLTRELVYTGITRAKARLDLYGDRALLA 665 Query: 588 AAIATRTERRSGLA 601 A+ +TER SGLA Sbjct: 666 QAVRKKTERYSGLA 679 >UniRef50_Q2BKD7 Exodeoxyribonuclease V alpha chain n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKD7_9GAMM Length = 614 Score = 464 bits (1195), Expect = e-129, Method: Compositional matrix adjust. Identities = 286/602 (47%), Positives = 372/602 (61%), Gaps = 23/602 (3%) Query: 12 EHKQLRPLDVQFALTVAGDE--HPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLA 69 E+ +R +D QFA VA + P + AAL+S + G+VCLP RL + + Sbjct: 16 ENGLIRNVDFQFAKLVAEQKPSQPQLIYLAALVSFELASGNVCLPKLRLLSAKGYWD--- 72 Query: 70 TCVSEIGELQNWEECLLASQAVSRG----DEPTPMILCGDRLYLNRMWCNERTVARFFNE 125 + + Q+W L ++A G D T ++ +R YL R W E +A Sbjct: 73 EEIESVINQQDWSS--LKAEAFILGQPELDSNTLLLFDQERFYLKRYWEYESAIASQLIN 130 Query: 126 VNHAIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 ++VD ALL + L +LFP+++ EI+WQKVAAAVA+ +R SVISGGPGTGKTTTV KL Sbjct: 131 RAQTVDVDRALLKEGLAELFPMANQEIDWQKVAAAVAVQKRFSVISGGPGTGKTTTVIKL 190 Query: 185 LAALIQMADGE--RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 LA I A I+L APTGKAAARL ES+ A ++L L + + IPE A TLHR Sbjct: 191 LALYIAQAKAHSRNINIKLVAPTGKAAARLGESISSAKQRLSLDADIAELIPEQAGTLHR 250 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG P S R +H NPLHLD+LV+DEASM+DLPMM RL+ ALP AR+I LGDRDQLA Sbjct: 251 LLGVIPNSIRFKHSQENPLHLDLLVLDEASMVDLPMMCRLLAALPAEARLILLGDRDQLA 310 Query: 303 SVEAGAVLGDICAY-ANAGFTAERARQLSRLTGTH--VPAGTGTEAASLRDSLCLLQKSY 359 SVEAG+VLGDIC++ + ++A QL L +P GT A D L LL+KSY Sbjct: 311 SVEAGSVLGDICSWPGQLDYGPKQADQLFDLCQLPEVLPISEGTPFA---DCLALLRKSY 367 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 RF SGIGQLA A+N G+K AV V + ++D+++ L S + Y M+ E + + + L Sbjct: 368 RFDESSGIGQLARAVNLGNKQAVSCVLKAGYSDLQQHNL-SADSYELMISETVNFHAKLL 426 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 + P+ + + YQLLCALREGP+GV GLN+RI Q +Q + I WY G Sbjct: 427 RDIAQGLTPEQSLDYLSNYQLLCALREGPYGVVGLNDRIRQGLQSRGLIKE--EGLWYPG 484 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 RP+MI RND LGLFNGDIGIA G F G ++SV PSRLPEH+T +AMTVH Sbjct: 485 RPIMITRNDQNLGLFNGDIGIAYREPDGRIKVFFEQQGEVRSVLPSRLPEHQTVYAMTVH 544 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSG 599 KSQGSEF AL+LP +P++TREL+YT +TRAR L+L+ + IL+AA +TER G Sbjct: 545 KSQGSEFTRVALLLPPVDSPLMTRELLYTGITRARESLALFTTKGILTAATERKTERAGG 604 Query: 600 LA 601 LA Sbjct: 605 LA 606 >UniRef50_C4L7B4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B4_TOLAT Length = 632 Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust. Identities = 287/617 (46%), Positives = 376/617 (60%), Gaps = 29/617 (4%) Query: 11 VEHKQLRPLDVQFALTVA-GDEHPAVTLAAALLSHDAGEGHVCLPLS----RLENNEASH 65 +E + LR LDVQ A +A D +V LA AL S + G GHVC LS RL +A Sbjct: 16 LEARLLRDLDVQLAQLLARWDADESVQLAVALTSQELGRGHVCFDLSTWPERLAQWQAQL 75 Query: 66 PLLATCVSEI------GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 A E +LQ + + ++ P+ L RLYL+R + E+ V Sbjct: 76 SQAALSWPETTVAALDAKLQQSPLVRVITDPSDAEEQGQPLTLFAGRLYLSRYFRFEQQV 135 Query: 120 ARFFNEV----NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 A + + ++A+ E LA L +LF E +WQ VA A A R ++ISGGPGT Sbjct: 136 ACWLQQASLPADNAVNATE--LAAQLRQLFTPQPETDWQAVAVATACEGRFTLISGGPGT 193 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP--LTDEQKKRI 233 GKTTTV KLLA L+ ++ + IRLAAPTGKAAARLTES+ KA +L + + + I Sbjct: 194 GKTTTVTKLLALLVAQSE-QSLLIRLAAPTGKAAARLTESIAKAKTELATQVNADWLEGI 252 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 P ASTLHRLLG PG RHHA NPL LDVLVVDEASMIDLPMM+RL+ ALP AR+I Sbjct: 253 PTQASTLHRLLGVIPGQPEFRHHAQNPLPLDVLVVDEASMIDLPMMARLLAALPPQARLI 312 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 LGD+DQLASVEAGAVLGDIC + G + +A L + TG + L D LC Sbjct: 313 LLGDKDQLASVEAGAVLGDICRFVAQGISQPQAECLQQRTGYDLQPYVQVTGHPLCDRLC 372 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM-LEEAL 412 LL+KS+RF +DSGIG+LA A+N GD+ + V+ +D+ DI L S E + M ++ A Sbjct: 373 LLRKSWRFAADSGIGKLAEAVNNGDEKTAQAVWTRDYRDIR---LHSDEQRLEMAVKLAA 429 Query: 413 AGYGRYLDLLQARAEPD---LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH 469 GY YL LL + ++QAFN+ +LLCAL +GP+G+ G+N+ I Q +Q + ++ Sbjct: 430 EGYHAYLALLDKPMSAEGAVALLQAFNQIRLLCALHDGPWGINGMNQAIGQRLQTQGRLQ 489 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPE 529 + W+ GRPVMI ND LGL+NGDIGIA G+ RVWF +PDG PSRLP Sbjct: 490 M--TADWFAGRPVMITENDYGLGLYNGDIGIAASDGERLRVWFVLPDGKAHGFLPSRLPA 547 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 H+T WAMTVHKSQGSEF H L+LP + P++TREL+YT +TRAR +L L+A +L+ Sbjct: 548 HDTAWAMTVHKSQGSEFTHTLLLLPPETNPLLTRELLYTGITRAREQLDLFATPEVLALM 607 Query: 590 IATRTERRSGLAALFSS 606 + +TER SGL + + Sbjct: 608 VRKQTERYSGLVTMLET 624 >UniRef50_A6W0A8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0A8_MARMS Length = 639 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 277/606 (45%), Positives = 383/606 (63%), Gaps = 32/606 (5%) Query: 16 LRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN-------EASH 65 LR +D Q+ +A ++H AV +A AL S G GH+C+ L + N E Sbjct: 39 LRAIDCQWIEQLAHHAKEDHLAVHIAGALCSAYLGGGHICIDLESIWNRPPEGIELEELR 98 Query: 66 PLLATCVSEIGELQNWEECLLASQAVSRGDEPT--PMILCGDRLYLNRMWCNERTVARFF 123 +LA+C +I +W L S+ VS + PM+L G RLYL R + E+ V + Sbjct: 99 AVLASC--KINNAADWCAVLQDSRLVSSAGKVNERPMVLAGTRLYLYRYFQYEQQVLNYL 156 Query: 124 N-EVNHA-IEVDEALLAQTLDKLFPV-SDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + + A VD LL Q LFP S+E++WQKVA A A + SVISGGPGTGKTTT Sbjct: 157 KGQFSVAPFAVDAGLLMQ----LFPTQSEEVDWQKVAVANAASLPFSVISGGPGTGKTTT 212 Query: 181 VAKLLAALI--QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 V +LLA L+ +A+G+ RI LAAPTGKAAARLTES+ KA LPL+D+ K IPE AS Sbjct: 213 VTRLLALLVAQSLAEGKLLRIELAAPTGKAAARLTESISKAKADLPLSDDVKFAIPEQAS 272 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 TLHRLLG++ G R +H+ NPLHLDVL++DE SM+DLPMM++LIDA+ + R+I LGD+ Sbjct: 273 TLHRLLGSEFGRSRFKHNKDNPLHLDVLLLDEVSMVDLPMMAKLIDAMQPNGRLILLGDK 332 Query: 299 DQLASVEAGAVLGDIC-AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 DQLASVEAG+VLGD+ F E A +LS+LTG H+ + A ++ +L LL+ Sbjct: 333 DQLASVEAGSVLGDLSYGIEEVYFQPEWAERLSQLTGEHLAPFGNSSAPAISRALTLLRT 392 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY--IAMLEEALAGY 415 SYRF ++SGIG LA A+N G+ AV Q ++ D+E R + G+ IA L + GY Sbjct: 393 SYRFDANSGIGHLAKAMNAGNSQAVLRCLQSNYADVEWRAPEEGQTKADIATLAK---GY 449 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 Y + ++ + + F+ YQ+L A+R+G FGV +N ++E + Q+ ++ + PH Sbjct: 450 DEYWEAVRQNLDIAKLYSVFSRYQILTAVRQGEFGVEKVNAQLEHYFYQRGRV-KDPHV- 507 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 WY G+ VM+ RND+ALGLFNGDIG+ + D Q RVWF PDG+ + PSRL E E + Sbjct: 508 WYPGKAVMLTRNDAALGLFNGDIGLCMPDEFQRLRVWFMQPDGSFTGLLPSRLSEFEVVF 567 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 AMTVHKSQGSEFD AL+LP +PV+T+EL+YT +TRA++ L+ ++ +A ++R Sbjct: 568 AMTVHKSQGSEFDQVALLLPMAPSPVLTKELLYTGITRAKKMFILWGSSGLIRSATSSRI 627 Query: 595 ERRSGL 600 +R SGL Sbjct: 628 QRDSGL 633 >UniRef50_Q1LST7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LST7_BAUCH Length = 619 Score = 441 bits (1134), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/615 (40%), Positives = 368/615 (59%), Gaps = 20/615 (3%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHP--AVTLAAALLSHDAGEGHVCLPLSRLEN 60 ++ +L+A + RPLD+ FA + H A+ LA+A LS D G GHVCLPLS L Sbjct: 1 MENIILQAQKLGLWRPLDIHFAHLMVALSHSTDALFLASACLSADVGMGHVCLPLSLLTP 60 Query: 61 N---EASHPLLAT-CVSEIGELQ--NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWC 114 + E HP LA + G LQ +W+ LL S +VS G TP++L +LYL+R+W Sbjct: 61 DTLFEGLHPKLAQQAWQQAGSLQLNDWQNLLLTSPSVSDGSRSTPLVLDKQQLYLHRLWQ 120 Query: 115 NERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGP 173 +E TVA FF + + DE ++ L+ LFP ++ INWQK+A A+ALT ++S+IS Sbjct: 121 DECTVAHFFQR-SMLVPYDENIVRNILNALFPTTNNSINWQKIAIALALTSKVSLISYRT 179 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 K T + KLLAA++Q+ E I +AAPT K A+LT+ + +++ L D + +I Sbjct: 180 SNDKNTMITKLLAAILQINKSEYLHIIIAAPTSKVTAQLTDYIARSMMILT-HDYLRYKI 238 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 L++LLG QP S+R++++ NPL+LD+L++DE+S++DLPMM+ LI+ALP ARVI Sbjct: 239 TYQVINLYKLLGTQPNSRRIQYYCDNPLYLDILILDESSIVDLPMMANLINALPAQARVI 298 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR--DS 351 FLG+ DQ SV+ G V DI + G++ +R ++LSRLTG + S + DS Sbjct: 299 FLGNDDQFISVDTGTVFSDIFQLIDHGYSIKRCQELSRLTGYQLSNNRTNNMFSYQVTDS 358 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKT-AVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 LCLLQ + SGI LA IN G+ A+ + + DI DY M+ + Sbjct: 359 LCLLQNNNSLKDSSGISILANMINTGNNNDALILLNSSKYADIYYIQRHCELDYQRMVHD 418 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 + Y YL LL A P II+ FN Y+LL LR+G FGV LN IEQ + + + Sbjct: 419 CVTNYSNYLQLLNAGESPASIIEEFNRYRLLSMLRKGKFGVVCLNXCIEQTLIYYGLLKK 478 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV--WFAMPDGNIKSVQPSRLP 528 +S Y G+P+++ + +LGL+NGDIG+ L + ++ +F +P+ +IK V S LP Sbjct: 479 --NSSTYAGQPIILLHDIQSLGLYNGDIGLILSESKNNKLHAYFILPNNSIKVVATSYLP 536 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQR-TPVVTRELVYTAVTRARRRLSLYA-DERIL 586 ++ T +A+TV++SQ +F HAAL+LP + +P+ TREL+Y VT+AR+ LS+YA D IL Sbjct: 537 KYATAFAITVYQSQELKFTHAALVLPDEICSPIFTRELLYAGVTKARKFLSIYAPDNEIL 596 Query: 587 SAAIATRTERRSGLA 601 + I T+RRSGL Sbjct: 597 ADIITHPTQRRSGLT 611 >UniRef50_A4VRQ4 Exodeoxyribonuclease V alpha chain n=2 Tax=Proteobacteria RepID=A4VRQ4_PSEU5 Length = 616 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 271/570 (47%), Positives = 360/570 (63%), Gaps = 17/570 (2%) Query: 34 AVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSR 93 AV LAA L G VCLPL RL P +S + L W L AS V Sbjct: 29 AVLLAATLCCEALAAGDVCLPLERLAGR---RPWPDVDLS-MPALPVWRAQLEASTLVGT 84 Query: 94 GDEPTPMILCGDRLYLNRMWCNERTVA-RFFNEVNHAIEVDEALLAQTLDKLFPVSDE-I 151 D+ P+ L GDRLYL R E+ +A + A EVDEA LA++L +LF + + Sbjct: 85 PDDYAPLTLVGDRLYLARYQAYEQQLAEQLLARTGDAPEVDEARLAESLARLFAFNQQRP 144 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ++AAA A+ RR++VISGGPGTGKTTTV +LLAAL++ GER I LAAPTGKAAAR Sbjct: 145 DWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLAALLEQPGGERLAIGLAAPTGKAAAR 204 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E++ A +LP++D K+ +P++A TLHRLLG++ S R+RH A NPL LDVLVVDEA Sbjct: 205 MAEAIRNAKAELPVSDAVKEALPDEARTLHRLLGSRGDSPRVRHDAANPLALDVLVVDEA 264 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+DL +M++L+ ALP AR+I LGD+DQLA+VEAGAV ++C GF A A +L R Sbjct: 265 SMVDLALMAKLVAALPPKARLILLGDKDQLAAVEAGAVFAELC--EGRGFDAGAASELER 322 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 +TG VP T + L D++ LL S+RF DSGIG+LA IN GD + Q+ Sbjct: 323 ITGQPVP--VETPRSRLGDAVVLLTHSHRFAGDSGIGELARRINAGDAKGTVALLQEGRA 380 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 D+ S I LE+ GYG YL + + +P +AFN ++ L A REGPFGV Sbjct: 381 DLAWNATPSPTALIERLEQ---GYGGYLQAAR-QGDPGAAFEAFNGFRALTAQREGPFGV 436 Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW 511 G+NE +E + +R++ RWY GR VM+ +ND ALGLFNGD+G+ L QG RV+ Sbjct: 437 TGINEALE--TRFRRRLGVPARERWYPGRAVMVRQNDYALGLFNGDVGLCLKTEQGLRVF 494 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 F DG + P+RLP H++ +AMTVHKSQGSEF L LP Q +P++TR L YT +T Sbjct: 495 FEGDDG-YRGFAPARLPSHDSAFAMTVHKSQGSEFAEVLLALPDQPSPLLTRALFYTGIT 553 Query: 572 RARRRLSLYADERILSAAIATRTERRSGLA 601 RA+RR+ ++A L+ A++TR ER +GLA Sbjct: 554 RAKRRVEIWALPARLAEAVSTRAERAAGLA 583 >UniRef50_Q2LTC7 Exodeoxyribonuclease V alpha chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTC7_SYNAS Length = 670 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 268/629 (42%), Positives = 355/629 (56%), Gaps = 66/629 (10%) Query: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLA----------------T 70 ++G ++ V LAAAL S GHVCL L+ A PL+A + Sbjct: 40 ISGGDNQDVFLAAALTSRSNRGGHVCLDLAEY----AGRPLMADIREEPEDEILEEMPES 95 Query: 71 CVSEIGELQNWEECLLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNEVNHA 129 + L W E LLA V E P+IL RLYL R W E T+ RF + Sbjct: 96 ILLSCPPLSIWRETLLACSVVGTPGEYKPLILDDKSRLYLYRYWSYEDTLVRFIKSCGNP 155 Query: 130 IE-----------VDEALLAQTLDKLFP-------VSDE-----INWQKVAAAVALTRRI 166 E +D + L L FP D+ +WQK+AA L R+ Sbjct: 156 AESEDFRKISNVSLDLSGLGHNLQTFFPEDAGQFRFEDDKSKIFPDWQKIAALAVLRNRL 215 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 VISG PGTGKTTT A+ LA L ++ G + RI LAAPTGKAA RL E++ A ++ L Sbjct: 216 VVISGSPGTGKTTTAARALALLQILSRGPKLRIALAAPTGKAAVRLDEAMNSAYARVGLN 275 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 D+Q K A T+HRLLG GS RH GNPL DV+VVDEASM+DLP+M++L+ AL Sbjct: 276 DQQGK-----AMTVHRLLGTVAGSPYFRHGPGNPLPYDVIVVDEASMVDLPLMAKLVQAL 330 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQ-LSRLTGT--------- 335 +R+I LGDRDQLASVEAGAVLGD+C +AG F ++ RQ + R+TG Sbjct: 331 SPASRLILLGDRDQLASVEAGAVLGDLCGPDDAGNFFSQAFRQEIRRMTGESCLPPVPFR 390 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD-FTDIE 394 H+P + DS+ LQK+YRF +SGIGQL+ A+NRGDK V ++ +DI Sbjct: 391 HLPPVPFRHLPPVSDSMVQLQKNYRFDENSGIGQLSRAVNRGDKDRVFSILNSSRCSDIA 450 Query: 395 KRLLQSGEDYIAMLEEALAGYGR-YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 L ++EE L Y R Y+ ++ P++I F +++LCALR GPFGV Sbjct: 451 WENLPDPLGLPRLIEENLIHYFRKYMQMVINNDNPEVIFDYFERFRILCALRRGPFGVVY 510 Query: 454 LNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR--GQGTRVW 511 +N +E ++ +R I RWY GRP+MI RND +LGLFNGD+G+ L G G V+ Sbjct: 511 VNALLESMLRSERLIAG--SGRWYPGRPIMINRNDYSLGLFNGDVGLTLPEHGGSGLSVF 568 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 F +GN + P RLPEHET +AMTVHKSQGSEFD +IL + +P++TREL+YT V+ Sbjct: 569 FRDSEGNFRRFAPFRLPEHETVYAMTVHKSQGSEFDEVLMILSDRDSPLLTRELIYTGVS 628 Query: 572 RARRRLSLYADERILSAAIATRTERRSGL 600 RA++ L L+ E I+ AI+ R +R SGL Sbjct: 629 RAKKGLLLWGREDIIRQAISRRIKRTSGL 657 >UniRef50_B9M4M2 Exodeoxyribonuclease V, alpha subunit n=8 Tax=Desulfuromonadales RepID=B9M4M2_GEOSF Length = 609 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 250/597 (41%), Positives = 352/597 (58%), Gaps = 40/597 (6%) Query: 23 FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWE 82 F +A + + LAAAL S G+VCL L+ + + A + EI + W Sbjct: 26 FMCRLASSDDKELWLAAALASQAVSNGNVCLDLTDVCQSAAGY--------EIDDPAAWS 77 Query: 83 ECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVAR-FFNEVNHAIEVDEALLAQT 140 L V + TP++L +RLYL+R W E +AR ++ D LL + Sbjct: 78 ARLRELPVVGAPGDFTPLVLDSANRLYLHRYWSYESDLARALLRLADNKPVFDRELLREG 137 Query: 141 LDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 + +LFP + E +WQ++AA ++R+I+VI+GGPGTGKT+TV ++L LI+ A +C Sbjct: 138 MSRLFPEGNAGETDWQQLAALACVSRQITVIAGGPGTGKTSTVFRVLILLIEQATAGKCH 197 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTGKAA RL ES+ A +P+++ ++IP +T+HRLLG PGS R R++ Sbjct: 198 IALAAPTGKAAGRLGESIISARSGMPVSEHVLQQIPNQVTTIHRLLGHVPGSSRFRYNRD 257 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL DV+VVDEASM+ LP+M++L+DAL D R+I LGDRDQLASVEAGAVLGDIC N Sbjct: 258 NPLPFDVVVVDEASMVSLPLMAKLVDALRDTTRLILLGDRDQLASVEAGAVLGDIC---N 314 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAAS------LRDSLCLLQKSYRFGSDSGIGQLAA 372 G + ++ L + G E A L DS+ +L+KSYRFG+DSGIG+L Sbjct: 315 TGSSQRLSKAFRDLAEEVIGPGAAIEYADDADVHHLNDSIIVLRKSYRFGADSGIGELGR 374 Query: 373 AINRGD-KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-----GYGRYLDLLQARA 426 +N G+ A++ + Q + D LL + L+EALA G+ YL A + Sbjct: 375 LVNEGNGAAALELLSGQKYAD----LLFRENTGMEKLQEALAVTITDGFRPYLMAKTAES 430 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIAR 486 + ++++LCALR+GPFG +N + + + +K I PH RWY G+PVM+ R Sbjct: 431 A----FASLADFRILCALRQGPFGTEAVNRLVAKILAEKGLI--RPHGRWYAGQPVMVTR 484 Query: 487 NDSALGLFNGDIGIALDRGQGT---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 ND L LFNGDIGI L R +F DG+++S+ P RLPEHET +AMTVHKSQG Sbjct: 485 NDYNLRLFNGDIGIILPDPAADNELRAFFTTTDGSLRSILPLRLPEHETAFAMTVHKSQG 544 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SEF L+LP + + V+TREL+YTA+TRA+ + + + + A RT R+SGL Sbjct: 545 SEFSRILLLLPDRHSEVLTRELIYTALTRAKTGVEVCGPGDVFVKSSARRTLRKSGL 601 >UniRef50_Q1QYD2 DNA helicase/exodeoxyribonuclease V, alpha subunit n=3 Tax=cellular organisms RepID=Q1QYD2_CHRSD Length = 655 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 292/623 (46%), Positives = 381/623 (61%), Gaps = 49/623 (7%) Query: 16 LRPLDVQFALTVAGDEHPA-----VTLAAALLSHDAGEGHVCLPLSR------------- 57 LRPLD FA +A EH A V LAAAL SH G GHVCL L R Sbjct: 34 LRPLDAHFARFLA--EHDARAPVEVLLAAALASHQLGRGHVCLTLPRALAAPRDVLSLPP 91 Query: 58 LENN--EASHPLLATCVSEIGELQNWEECLLASQAV-SRGDEPTPMILCGDRLYLNRMWC 114 LE + S PL + + E W L S V S G TP++L G+RLYL R W Sbjct: 92 LEEDAPHESVPLPDDFLRGL-ESATWAARLAESPLVASPGPGTTPLVLVGERLYLRRYWR 150 Query: 115 NERTVARFFN-EVNHAIEVDEALLAQTLDKLFPVS----DEINWQKVAAAVALTRRISVI 169 E+ VA + + V EA LA L +LF + D +WQKVA +AL R+++I Sbjct: 151 AEQAVATHLGARLGRPLPV-EASLAAPLARLFSANGASEDAPDWQKVACTLALRNRLTII 209 Query: 170 SGGPGTGKTTTVAKLLAALIQM----ADGERC-RIRLAAPTGKAAARLTESLGKALRQLP 224 SGGPGTGKTTTV +LLA L + GER RI+LAAPTGKAAARL+ES+ A+ L Sbjct: 210 SGGPGTGKTTTVTRLLALLQTQALAASRGERALRIQLAAPTGKAAARLSESIAGAMSGLD 269 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 + + +P +A TLHRLLGA+P +++ RHHAG PL LD+LVVDEASM+DL +M+ L++ Sbjct: 270 VEADVAATLPREALTLHRLLGARPDTRQFRHHAGQPLSLDLLVVDEASMVDLELMAALLE 329 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYA-NAGFTAERARQLSRLTGTHVPAGTGT 343 ALPD AR+I LGD+DQLASVEAG+VLGD+CA A + G++ LS+L T + T Sbjct: 330 ALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSPAACEVLSQLADTDM---TPD 386 Query: 344 EAAS-LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 A S L D + +L+KS+RF + SGIG LAAA N GD A + +Q +TDI+ L S Sbjct: 387 PACSPLADHVVMLRKSFRFDAHSGIGALAAATNDGDVAAFRQAWQAQYTDIQ--WLASSN 444 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 + ALAGY + ++ A P ++ N++Q+LCAL+ GP+GV GLN RI + Sbjct: 445 AQREVERAALAGYRDFYRRVRDGASPADVLARLNDFQVLCALKRGPWGVEGLNARIAAGL 504 Query: 463 QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGTRVWFAMPDGNI 519 ++ I P WY GRPVM+ RND LGL+NGDIGIAL + G+ RV+FA G + Sbjct: 505 WREGWIE-DPQG-WYAGRPVMVTRNDPQLGLYNGDIGIALPDAEAGRRLRVFFATA-GGV 561 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 ++V PSRL ET +AMTVHKSQGSEF H +LP + P++TRELVYT +TRAR+RL+L Sbjct: 562 RAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGITRARQRLTL 621 Query: 580 Y-ADERILSAAIATRTERRSGLA 601 ++ +A+ R R SG A Sbjct: 622 AGGGASVVESALTRRVVRDSGFA 644 >UniRef50_A1S6V1 Exodeoxyribonuclease V n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6V1_SHEAM Length = 631 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 281/625 (44%), Positives = 371/625 (59%), Gaps = 40/625 (6%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59 L+ QL +L LD FAL +A D+ P + L L+S H CL LS L Sbjct: 14 LKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQLSRQHPCLDLSALM 73 Query: 60 ------NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMW 113 +A +LA + +G + N + AV DE P+IL G RLYL R Sbjct: 74 LGNPMGTRQAQLRILADYPALLGAVANLD-------AVGSPDENKPLILEGKRLYLKRYQ 126 Query: 114 CNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGG 172 E VA N + A A L+ LFPV E I+WQK+A A A ++++VI+GG Sbjct: 127 GFESRVAARLNAMAGTELSTHAHTAALLEALFPVGKEAIDWQKIAVATAAGKQLTVITGG 186 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL------PLT 226 PGTGKTTTV KLL L + IR+ APTGKAAARL+ES+ + ++L PL Sbjct: 187 PGTGKTTTVTKLLLLLSLSS---SLNIRMVAPTGKAAARLSESIKASKQRLTQELNSPLI 243 Query: 227 DEQK-KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 + +PEDASTLHRLLG QPG+ + RHH NPL LD+L+VDEASM+DLPMM RL+DA Sbjct: 244 SQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRLLDA 303 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG--FTAERARQLSRLTGTHVPAGTGT 343 LP HAR+I LGD+DQLASVEAGAVL DIC A G ++A + ++ LTGT + Sbjct: 304 LPGHARLILLGDQDQLASVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKL--APRA 361 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 +A L D+LC L S+RF D+GIGQLA A+N GDK V V+Q+++ ++ + + Sbjct: 362 DAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKVAAVWQKNYAELSWIPGDNSDG 421 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 A+++ A + Y YL ++ +AEP I+Q +NE+++LCA++ G +GV G+N I + Sbjct: 422 LAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAALA 481 Query: 464 QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD-RGQGTRVW--FAMPDGNIK 520 + I P +Y GRPVMI ND +LGLFNGDIGI L G R+ F DG + Sbjct: 482 RAGLI--EPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVL 539 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP----VVTRELVYTAVTRARRR 576 V P+RLP HET +AMTVHKSQGSEF AL LP Q TP ++ REL+YTA+TRA+ + Sbjct: 540 KVLPARLPGHETCYAMTVHKSQGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSK 599 Query: 577 LSLYADERILSAAIATRTERRSGLA 601 + E + AA RTER SGLA Sbjct: 600 FTCLGTEALFEAATQRRTERASGLA 624 >UniRef50_Q1N2Q9 Exodeoxyribonuclease V alpha chain n=1 Tax=Bermanella marisrubri RepID=Q1N2Q9_9GAMM Length = 620 Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust. Identities = 262/615 (42%), Positives = 369/615 (60%), Gaps = 54/615 (8%) Query: 12 EHKQ-LRPLDVQFA---LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPL 67 +H Q R +D QFA L ++ D+H A+ A L+S G+G+VC +S+ H + Sbjct: 12 QHGQAFREIDKQFAKFCLDLSKDDHLAII--ALLVSDQLGQGNVCFDISQ------PHSI 63 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF---- 123 L+ SE+ EL C LA QA S D+ P++ G R+YL R E V + Sbjct: 64 LSE--SELSEL-----CHLAKQANS-NDQNFPLVFEGSRIYLQRYHQYECFVEQAIRSRC 115 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVS---DEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + + +EVD L ++ LFP + EI+WQKVA +VA+ +VISGGPGTGKTTT Sbjct: 116 QQYENDLEVDSLL--NMINNLFPPNYSKQEIDWQKVAVSVAVQSAFTVISGGPGTGKTTT 173 Query: 181 VAKLLAALIQM--ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 V KLLA LI+ G + IRLAAPTGKAA RLTES+G+A +L + + K IPE+AS Sbjct: 174 VIKLLALLIEQYKVKGRQPIIRLAAPTGKAAMRLTESIGQAKHRLQVDEHVKDAIPEEAS 233 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 TLHRLL + NPLHLD+LVVDEASMIDLPMM++L+ ALP H +++ LGD+ Sbjct: 234 TLHRLLKRNREGD-FYFNQMNPLHLDILVVDEASMIDLPMMAKLLAALPKHGQLVLLGDK 292 Query: 299 DQLASVEAGAVLGDIC-AYANAGFTAERARQLSRLTGTHVPAGTGTEA----ASLRDSLC 353 DQL+SVEAG+VL DIC + GF+ + + +++LT + A A +R+ +C Sbjct: 293 DQLSSVEAGSVLADICDSGTRHGFSESQLKLINQLTDIPLDQLKQNVAELHGAEIRNHVC 352 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L+KS+RF SGI LA A N GD + +F+ DF+D+ L +L+ A Sbjct: 353 HLRKSHRFSDHSGIAALARAANNGDVNRWQQIFEGDFSDLNFFDLTESNRQTLILQSA-K 411 Query: 414 GYGRYLDLLQARAEPDLII----QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH 469 Y Y +L+ + D + + FN Y++LCA++EG GVAG+N+ +EQ + + Sbjct: 412 LYSEYQNLIASDDNSDAVARRVHEVFNRYRILCAVKEGELGVAGINQSLEQALGYQET-- 469 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR----GQGTRVWFAMPDGNIKSVQPS 525 WY GRP+MI +ND L L+NGD+GI L R R F D I+ +QP+ Sbjct: 470 ------WYAGRPIMIQQNDYGLNLYNGDVGIVLPRLIDGKTQLRAAFLNADSEIRWLQPA 523 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 RLP+HET +AMTVHKSQGSEF+H AL+LP PV+T+EL+YT +TRA+ RL+L A +++ Sbjct: 524 RLPQHETVYAMTVHKSQGSEFEHCALVLPEYPAPVLTKELLYTGITRAKARLTLLARDKL 583 Query: 586 LSAAIATRTERRSGL 600 ++ + + +R SGL Sbjct: 584 IAYTLRNQVQRASGL 598 >UniRef50_A1SUW2 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Psychromonas RepID=A1SUW2_PSYIN Length = 698 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 273/685 (39%), Positives = 382/685 (55%), Gaps = 99/685 (14%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVT-LAAALLSHDAGEGHVCLPLSR------- 57 QL + E LR +D FA +A +T L+AA S G GH+CLP+ Sbjct: 4 QLKQWKEQGLLRSIDYHFAAFMAEMGADKLTQLSAAFCSEYLGLGHICLPVEEIIIRLND 63 Query: 58 ---------------------LENNEASHPLLAT--CVSEIGEL---------------- 78 L+NN +H LL++ CV + L Sbjct: 64 KCSLSELDLQGFCREHDMECLLQNNFEAHALLSSSICVGDNAPLCLQFNALYLTRYALFE 123 Query: 79 QNWEECLLASQAVSRGDE---PTPMILCGDRLYLNRMWCNERT----------------- 118 Q + LL +S G + ++ + YL + WC + Sbjct: 124 QLIADKLLDQPKLSLGSDIKVELDVLFATNYTYLWQDWCRDPRQPLPLLCEKYIDLLPGS 183 Query: 119 ------VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGG 172 V + F++ +A ++ Q L L P + NWQKV+AA+ALT VISGG Sbjct: 184 TVDWVGVEQLFSQAENAQDL------QPLGSLIPENKRCNWQKVSAALALTTARCVISGG 237 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 PGTGKTTTV KLLA L++ I+L APTGKAAARLTES+ AL +L + K + Sbjct: 238 PGTGKTTTVTKLLALLLKFQ--PTLLIKLVAPTGKAAARLTESITHALVELNIEPGIKDK 295 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 +P+ A+T+HRLLG + S R + L++D+LVVDEASM+DLP+M++L+ ALPDHAR+ Sbjct: 296 MPKVATTIHRLLGVKANSNHFRFNQDEKLNVDLLVVDEASMVDLPLMAKLLMALPDHARL 355 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 I LGD+DQLASVEAGAVLGDIC + +G++A++A+ L+ LTG T + ++ D+L Sbjct: 356 ILLGDKDQLASVEAGAVLGDICHFIESGYSAKKAQLLADLTGYTSLTKTAPRSPNMADNL 415 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV-FQQDFTDIEKRL-LQSGEDYIAMLEE 410 CLL+KSYRF SGIG LA AIN G + K + D+ D++ + G+ +A L Sbjct: 416 CLLRKSYRFDQYSGIGYLAKAINSGRANSKKVMALCDDYNDLQHYPNTELGKKELAAL-- 473 Query: 411 ALAGYGRYLDLLQA-----RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ-- 463 L GY YL L R +++ FN++++LCA REG +GV LN+ E ++ Sbjct: 474 VLEGYRPYLQNLSTITVDNRNLAGQLLKQFNQFKILCATREGEWGVKCLNKLCETVLEKA 533 Query: 464 ------QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTRVWFAMPD 516 Q K +H + WY GRPVMI +N+ LGL+NGDIG+ LD RV+F MPD Sbjct: 534 GLLTTGQVHKDPQHAYVYWYVGRPVMITQNNYHLGLYNGDIGLCLLDESLQLRVYFQMPD 593 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 +I QPSRLP HET +AMTVHKSQGSEF+H L LP VV+REL+YTA+TRA+++ Sbjct: 594 ASIADFQPSRLPNHETVFAMTVHKSQGSEFEHTVLALPENHVSVVSRELIYTAITRAKKQ 653 Query: 577 LSLYADERILSAAIATRTERRSGLA 601 L+L+AD ++++A+ +T+R S L Sbjct: 654 LTLFADLSLMASAMRHKTKRFSRLV 678 >UniRef50_A4JS83 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Proteobacteria RepID=A4JS83_BURVG Length = 707 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 296/691 (42%), Positives = 381/691 (55%), Gaps = 89/691 (12%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCL----- 53 ++++ L E V LR +D FA +A D H + LAAAL SH G GH CL Sbjct: 21 QMERLLAEWVACGWLREVDAAFARFLASEAPDAHALLLLAAALASHQLGRGHACLDLQAT 80 Query: 54 ----------PLSRLENNEASHP-LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL 102 P +A P +L + V + +W+ L V G TP++L Sbjct: 81 LADPAFVLSLPPDGPAPRDADAPVMLPSHVLTGVTVAHWQAALGHGDLVGDGAGATPLVL 140 Query: 103 CGDRLYLNRMWCNERTVARFFNE-VNHAIEVDEAL----LAQTLDKLFPVSD-------- 149 G RLYL R W E+ V +E + ++E+ +A+ L L LFP+ Sbjct: 141 TGTRLYLRRYWQYEQRVCDALDERLARSVELADAVPADRLRDALRTLFPLRHTRAEPAGE 200 Query: 150 -EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM-----ADGERCRIRLAA 203 +WQK+A A+A SVI+GGPGTGKTTTV KLLA L + DG RIRLAA Sbjct: 201 RHPDWQKLACALAARSAFSVITGGPGTGKTTTVVKLLALLQSLALMAGGDGRALRIRLAA 260 Query: 204 PTGKAAARLTESLGKALRQLPLTD-----EQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 PTGKAAARL ES+ A QLP D + IP +TLHRLLG +P S+R RHHAG Sbjct: 261 PTGKAAARLNESIAGAAAQLPFDDFPQGASVRAAIPVSVTTLHRLLGTRPDSRRFRHHAG 320 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL LDVLV+DEASM+DL MM ++ ALP AR+I LGD+DQLASVEAGAVLG++C A Sbjct: 321 NPLSLDVLVIDEASMVDLEMMHAVLSALPARARLILLGDKDQLASVEAGAVLGELCQRAR 380 Query: 319 AG-FTAERARQLSRLTGTHVPAGTGTEAASLRD-SLCLLQKSYRFGSDSGIGQLAAAINR 376 AG +T + L ++TG V A A S D S+ +L+ S+RF ++SGIG+LA A+N Sbjct: 381 AGHYTPQTQAWLQQVTGEQVGAALVDPAGSALDQSIAMLRFSHRFSAESGIGKLAEAVNM 440 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML-------------------EEALAGYGR 417 G+ V V+ + D+ LL E A+L +A GY Sbjct: 441 GEPAEVARVWAHGYADLA--LLDCSEKPDAVLGALVVDGVADDDVERESADGQARRGYRH 498 Query: 418 YLDLLQARAEP------------DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 YL L+ P + ++ A E+QLLCALR GP+GV GLN R+E+ + Sbjct: 499 YLQTLRREQPPSGADQAGFDRWANAVLDAHGEFQLLCALRRGPWGVDGLNRRVERLLHAA 558 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGTRVWFAMPDGN-- 518 I P WY GRPV++ RND LGL NGDIGI L D RV FA DG+ Sbjct: 559 NLI--APTGEWYLGRPVLVTRNDYELGLMNGDIGITLALPAPDGEMRLRVAFAAGDGSGR 616 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 IK V PSRL ET +A+TVHKSQGSEF HAAL+LP +PV+TRELVYT +TRARR L+ Sbjct: 617 IKWVLPSRLQAVETVFALTVHKSQGSEFAHAALVLPDTLSPVLTRELVYTGITRARRFLT 676 Query: 579 LYA--DERILSAAIATRTERRSGLAALFSSR 607 + + I+ A+ R R SGL+A F +R Sbjct: 677 IASAGGRAIIEQAVQMRVLRASGLSAGFDAR 707 >UniRef50_C0QI06 RecD2 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI06_DESAH Length = 665 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 278/642 (43%), Positives = 361/642 (56%), Gaps = 65/642 (10%) Query: 16 LRPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLSRL------------EN 60 LRPLD F + + E A V L AAL+SH GH+CL L L E Sbjct: 35 LRPLDRAFVVFLHHQEKDAGFLVLLGAALVSHQLARGHICLDLGPLLADPDGVLALPPEG 94 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 A L + + WE+ L S V TP+ L RLYL R W R VA Sbjct: 95 MTAKETLTPSRLLSGVTQDLWEQHLDCSPLVGGDTGNTPLALVSGRLYLRRYWDCTRQVA 154 Query: 121 RFFNEVN-HAIEVDEALLAQTLDKLFPV--------SDEINWQKVAAAVALTRRISVISG 171 ++ I+V L Q LD +F EI+WQ VAAA+A T +S+ISG Sbjct: 155 EQIKRLSAKKIDVPHDL-EQRLDGIFGAMRTPEENEKTEIHWQSVAAAIAATNALSIISG 213 Query: 172 GPGTGKTTTVAKLLAAL--IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 GPGTGKTTTV +LL L + M G RI LAAPTGKAAARLTES+ KA+ +L L ++ Sbjct: 214 GPGTGKTTTVVQLLGILQTLAMEAGRGLRISLAAPTGKAAARLTESIAKAVDRLSLPVQE 273 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 K +P+ STLHRLLG++P S+ H NPLH+D+LVVDEASMIDL MM+ L+ A+P Sbjct: 274 K--MPKSVSTLHRLLGSRPDSRNFIHDQNNPLHVDLLVVDEASMIDLEMMNALLQAIPPG 331 Query: 290 ARVIFLGDRDQLASVEAGAVLGDIC-AYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 AR+I LGD+DQLASVEAG+VLGD+C + A A F L + TG + +G + Sbjct: 332 ARLILLGDKDQLASVEAGSVLGDLCESPATACFLPATVAFLQQATGFDLSEFSG-PGREI 390 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK------------R 396 + +L+KS+RFG SGIG LA A+N+GDK V V++Q F+DI + R Sbjct: 391 DQQIVVLRKSHRFGEHSGIGALAGAVNQGDKNGVAEVWRQGFSDIFQVRVPTCHDNRFHR 450 Query: 397 LLQSGED-------------YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCA 443 L+ G ++ L + +G D L+A ++ FN++Q+L Sbjct: 451 LVLDGHSTTTGKEGPQGYRVFLETLSQGPGAFGSETDWLKA------VLHGFNQFQVLTP 504 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 LR G +GV LN I + + I WY GRPV++ RND +LGL NGD+GI Sbjct: 505 LRRGEWGVEALNLAIADVLYRSDLIDAT--QGWYPGRPVLVTRNDYSLGLMNGDMGIVAP 562 Query: 504 RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 +G RV F M DG++K + PSRL ET +AMTVHKSQGSEFDH A++LP TPV+TR Sbjct: 563 TTRGMRVVFPMGDGSLKLLLPSRLSNVETVYAMTVHKSQGSEFDHTAMVLPGTVTPVITR 622 Query: 564 ELVYTAVTRARRRLSLYA-DERILSAAIATRTERRSGLAALF 604 ELVYT +TRAR +L E IL+AA+ RT+R SGL L Sbjct: 623 ELVYTGITRARSWFTLVCPHEVILAAAVEQRTQRASGLGELI 664 >UniRef50_A3YGD9 Exodeoxyribonuclease V alpha chain n=1 Tax=Marinomonas sp. MED121 RepID=A3YGD9_9GAMM Length = 668 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 272/632 (43%), Positives = 364/632 (57%), Gaps = 56/632 (8%) Query: 16 LRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 +R LD+ L +AG H V LAA + S G+GH CLPL RL ++ ++ + Sbjct: 39 IRQLDLHTCLRLAGHCHEQRSEVLLAALVTSFYLGQGHSCLPLKRLFDSPFANVTQSQWQ 98 Query: 73 SEIGELQNWE----ECLLASQAVSRGDEPTPMI------------LCGDRLYLNRMWCNE 116 S + L + C L + + + E P+I L G+RLYL R + E Sbjct: 99 SALHSLDVFSLDQLMCALKASPLVQLVESKPLIPKHVTTLSKPFVLDGERLYLARYYAFE 158 Query: 117 RTVARFFNEV-NHA-IEVDEALLAQTLDKLFPVS----DEINWQKVAAAVALTRRISVIS 170 V + + +HA D A L Q LFP +E +WQK+A A A + SVIS Sbjct: 159 TQVIEYIQKAQSHASYAFDGAWLTQ----LFPSGETALNEFDWQKIAVANAALQSFSVIS 214 Query: 171 GGPGTGKTTTVAKLLAALIQMADG--ERCRIRLAAPTGKAAARLTESLGKALRQL----P 224 GGPGTGKTTTV KLL L + A + I LAAPTGKAAARLT+S+ +A +L Sbjct: 215 GGPGTGKTTTVTKLLVLLARQAQALSQGLTIELAAPTGKAAARLTQSIIQAKDKLRKSTD 274 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 D IPE ASTLHRLLG++ G +H+A NPLHLDVL+VDEASM+DLPMM++L+ Sbjct: 275 FNDAVFDLIPEQASTLHRLLGSEYGRSGFKHNAKNPLHLDVLLVDEASMVDLPMMAKLLA 334 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDIC-AYANAGFTAERARQLSRLTGTHVP---AG 340 ALP +AR+I LGD+DQLASVEAG+VL D+ F+ A++L +LT T Sbjct: 335 ALPPNARLILLGDKDQLASVEAGSVLADLTYGIEPIQFSETWAKRLGQLTQTDFTDLIQH 394 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD---FTDIEKRL 397 A S+R SL LL KSYRF +SGIG LA+A+N GD ++ Q + D+ + Sbjct: 395 DENHAVSIRQSLSLLVKSYRFDQNSGIGHLASAVNLGDAAQSLSILNQSGDQYPDLAWQK 454 Query: 398 LQSGEDYIAMLEEALA-GYGRYL----DLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 L E + + ALA GY +Y +L A + Q F+ YQ+LCA+R G +GV Sbjct: 455 LDQVEKGLDI--AALAKGYDKYWLGVKGVLHDGASIQSLFQLFSNYQILCAVRSGDYGVE 512 Query: 453 GLNERI-EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG---T 508 LN ++ E F ++ R + +P WY G+ ++I RND+ LGLFNGDIGI L Q Sbjct: 513 SLNHQLQEHFYKRGRML--NPQG-WYAGKAIIITRNDANLGLFNGDIGICLPDEQDKERM 569 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 RVWF +PDG+ K+ PSRL E+E + MTVHKSQGSEF H L+LP +PV+T+EL+YT Sbjct: 570 RVWFELPDGSFKAYLPSRLSENEAVFVMTVHKSQGSEFQHVELVLPPYESPVMTKELIYT 629 Query: 569 AVTRARRRLSLYADERILSAAIATRTERRSGL 600 +TRA+ SL+A ++ I TR R SGL Sbjct: 630 GITRAKSHFSLWASVDVIKTGIQTRVARHSGL 661 >UniRef50_C1D6T5 Exonuclease V alpha subunit RecD n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T5_LARHH Length = 654 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 277/641 (43%), Positives = 364/641 (56%), Gaps = 55/641 (8%) Query: 11 VEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASH-- 65 V ++LRPLD A +AG D PAV LA L SH G GH L L+ + + A+ Sbjct: 15 VGTRRLRPLDRALARFLAGHVPDTPPAVLLATVLASHQLGRGHPALDLAAVHADPAATLG 74 Query: 66 -------PLLATCVSEIGELQNWEECLLASQAVSR--GDEPTPMILCGDRLYLNRMWCNE 116 P L G L W L ++ + R D P++L G LYL R W E Sbjct: 75 WADDGDTPDLTALPVFAGPLSGWLAQLESAACIDRPPADSGAPLVLAGHNLYLRRYWQCE 134 Query: 117 RTVA---------RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRIS 167 TV R + ++ +D LLA D + +WQ VA A+A Sbjct: 135 ETVVEAIRARLPQRLAVPDDLSVRLDR-LLADMRDADEAARRQTHWQSVAVALAARLGFC 193 Query: 168 VISGGPGTGKTTTVAKLLAALIQMA-DGERC--RIRLAAPTGKAAARLTESLGKALRQLP 224 +ISGGPGTGKTTTV +LL L + D R IRLAAPTGKAAARL +S+ +A+ +L Sbjct: 194 IISGGPGTGKTTTVVRLLGLLQGLTLDAGRTPLAIRLAAPTGKAAARLQDSIRQAVARL- 252 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 ++ +P + STLHRLLG P S+ RHHAG PL LDVLV+DEASMIDL MM+ ++ Sbjct: 253 -DPAVREHVPAEVSTLHRLLGPLPDSRHFRHHAGQPLPLDVLVIDEASMIDLEMMAAVLS 311 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICA--------YANAGFTAERARQLSRLTGTH 336 ALP HAR+I LGD+DQLASVEAGAVLG +CA A + E A L +G Sbjct: 312 ALPAHARLILLGDKDQLASVEAGAVLGSLCAGSRVDVQDPAQWAGSHEMAAWLGAASGYA 371 Query: 337 VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK- 395 V A G A +L D + +L+KS+RFG DSGIG+LA A+N GD + TV+ + I + Sbjct: 372 VKA-DGLPAGALTDHVVVLKKSHRFGDDSGIGELARAVNDGDASRAATVWPRHADSIARL 430 Query: 396 --------RLLQSGEDYIAMLEEALAGYGRYLDLLQA--RAEPD----LIIQAFNEYQLL 441 +L G + A Y YL+++ A + +PD +++AFN +++L Sbjct: 431 EPASRCIEQLALQGRSSGSPAGWQAASYRAYLEIMAAGDQGDPDGWARQVLEAFNRFRVL 490 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CALR+G GV+G+N IE ++ + S WY GRPVM+ +ND LGL NGD GIA Sbjct: 491 CALRQGEEGVSGVNAAIEASLRTAGLLPAG-RSEWYAGRPVMVLKNDYGLGLMNGDTGIA 549 Query: 502 LDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L T RV FA+PDG ++ V PSRL + E+ +AMTVHKSQGSEF H L+LP +P+ Sbjct: 550 LPMPDATLRVCFALPDGRVRQVLPSRLTDVESAFAMTVHKSQGSEFSHTVLLLPQHDSPI 609 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 +TRELVYT +TRAR RL+L I A++ RT R SGLA Sbjct: 610 LTRELVYTGITRARDRLTLVGSADIFRRAVSRRTVRHSGLA 650 >UniRef50_A1TWJ9 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Marinobacter RepID=A1TWJ9_MARAV Length = 750 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 277/690 (40%), Positives = 380/690 (55%), Gaps = 106/690 (15%) Query: 16 LRPLDVQFALTV------AGDE-HPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLL 68 +RPLD FA + GD P V L AAL SH G GHVC+ L+ L + L Sbjct: 57 IRPLDTGFARLIRELSEEQGDSPQPLVLLLAALTSHQVGRGHVCIDLATLLADAGQTLAL 116 Query: 69 --------ATCVSEIGELQ-----------NWEECLLASQ---AVSRGDEPTPMILCGDR 106 SE+ LQ +CL A Q AVS G P P++L G R Sbjct: 117 PPEEPANTGLSESEVANLQGRYPQELLSRVQLTDCLAALQGSLAVSDGSVPAPLVLNGTR 176 Query: 107 LYLNRMWCNERTVARFFNE-------VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAA 159 LYL R W E+ +A + + L+ L KLF + +++QK+A A Sbjct: 177 LYLRRFWRYEQRIAEGIQQRLALPSPLADPQSAASQTLSTALSKLFRSTAPVDYQKLACA 236 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLT 213 +A R +VI+GGPGTGKTTTV LLAAL +A G + RIRLAAPTGKAAARL Sbjct: 237 LAARNRFAVITGGPGTGKTTTVVNLLAALQAVAGESPERAGRKYRIRLAAPTGKAAARLN 296 Query: 214 ESLGKALRQLPLTD----EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 ES+G A+ +LPL D + + IP +TLHRLLG++P +++ RHH NPL +D+LV+D Sbjct: 297 ESIGGAVSKLPLADLPGSVKLEDIPTKVTTLHRLLGSRPDTRQFRHHRDNPLLVDILVID 356 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA-NAGFTAERARQ 328 EASM+D+ +M+ + DALP A++I LGD+DQLASV+AGAVLG++C A +A +T + AR Sbjct: 357 EASMVDVDLMASVFDALPASAQLILLGDKDQLASVDAGAVLGELCQRALDAHYTPDTARW 416 Query: 329 LSRLTGTHVPAG-TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA--VKTV 385 L+ +TG VP L ++ +L+KSYRFG DSGI QLA ++N + T+ + + Sbjct: 417 LAAITGAQVPDSLVDNSGQPLDQAVAMLRKSYRFGQDSGIRQLAESVNSSELTSQVLGQI 476 Query: 386 FQQDFTDI------------EKRLLQSGEDYIAMLEEAL-----------------AGYG 416 F D+ ++ L I EA GY Sbjct: 477 RDAGFDDVIWLNGQTPKPDPDQTLELICHHAITGSPEAFRNAGLGRVVNGEVLPTPVGYR 536 Query: 417 RYLDLLQA--------RAEPDL----IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 YL+++ + RA D +++AFN++Q+LCALR+GP+GV GLN+RI Q + Sbjct: 537 HYLEVIHSCDLTAGSPRAAWDAHAAEVLEAFNDFQVLCALRKGPWGVEGLNQRIAQQLLA 596 Query: 465 KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL----DRG------QGTRVWFAM 514 ++ I + WY GRPV++ ND LGL NGDIGI DR Q RV F Sbjct: 597 EKLIDK--TEGWYAGRPVLVTGNDYNLGLMNGDIGITFNVPWDRAANGEPKQTLRVAFPS 654 Query: 515 PD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 D G I+ + PSRL + ET +AMTVHKSQGSEF+H L+LP + +PV+T+ELVYT +TR Sbjct: 655 GDSTGGIRWISPSRLQQLETVYAMTVHKSQGSEFNHTCLVLPDRLSPVLTKELVYTGITR 714 Query: 573 ARRRLSLY-ADERILSAAIATRTERRSGLA 601 A+ SL D ++ ++ + R SGLA Sbjct: 715 AKDWFSLITGDAQVFKDSVGQQVVRASGLA 744 >UniRef50_Q0VNI0 Exodeoxyribonuclease V alpha chain n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VNI0_ALCBS Length = 645 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 265/607 (43%), Positives = 350/607 (57%), Gaps = 43/607 (7%) Query: 35 VTLAAALLSHDAGEGHVCLPL------SRLENNEASHPLLATCVSEIGELQNWEECLLAS 88 V L AA S+ GH+CL L ++L L+A GE NW L S Sbjct: 46 VLLLAAFTSNQQASGHLCLDLKNRALATQLWGTNPPPELVALLP---GEPNNWLHELQQS 102 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE-VNHAIEVDEALLAQTLDKLFPV 147 VS+ TP++L G RLYL R W E VA + + A + EA L + L KLFP Sbjct: 103 TLVSQNGS-TPLVLDGSRLYLRRNWAREVAVADAIEQKLATANPLPEAPLREALAKLFPG 161 Query: 148 SDE-INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL--IQMADGERCRIRLAAP 204 S+ +WQ+VA A+A IS+I+GGPGTGKTTTV +LL L + MAD +R RIRLAAP Sbjct: 162 SNNHTDWQQVACALASRSGISIITGGPGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAP 221 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TGKAAARLTES+G+ + +L + + IP + +TLHRLLG +P S+ RHH NPLH D Sbjct: 222 TGKAAARLTESIGEQVGKLHVDATVRDAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHAD 281 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 ++VVDEASMID+ MM+ L++AL H R+I LGD+DQLASVEAGAV+GD+C +A+ G + Sbjct: 282 LVVVDEASMIDMDMMACLLEALSPHTRLILLGDKDQLASVEAGAVMGDLCRHAHEGRYKQ 341 Query: 325 RARQLSRLT-GTHVPAGTGTE---AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 R + T G + T+ +L +L+ ++R GIG+LA A+N + Sbjct: 342 RTIEFVNNTCGADISDYQETDQNPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENLP 401 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYI-AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEY- 438 V+ FQ+ + ++ L S + +L G+ L A A P F+++ Sbjct: 402 QVRESFQRYPDSLYRQHLSSDSQQLETLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWA 461 Query: 439 ----------QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND 488 QLL LR GPFGV LN+RI +QQ+ P WY GRPVM+ RND Sbjct: 462 AGLLKQLTHQQLLSGLRSGPFGVEQLNQRITHHLQQQDLA---PEREWYPGRPVMMTRND 518 Query: 489 SALGLFNGDIGIA---LDRGQGT-----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 LGL NGD+G+ L+ +GT RV F +PDG IK V PSRL ET +AMTVHK Sbjct: 519 YQLGLMNGDVGLTLPLLETRKGTAELLLRVAFQLPDGRIKWVLPSRLDGVETVYAMTVHK 578 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL--YADERILSAAIATRTERRS 598 SQGSEF H L+LP P++TREL+YTAVTRAR R +L + +L +A+ RT R S Sbjct: 579 SQGSEFKHTLLVLPDAPHPLLTRELIYTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRAS 638 Query: 599 GLAALFS 605 GLA S Sbjct: 639 GLAERLS 645 >UniRef50_B8FB95 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB95_DESAA Length = 589 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/597 (40%), Positives = 348/597 (58%), Gaps = 29/597 (4%) Query: 15 QLRPLDVQFAL---TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATC 71 + +D QFA +AG P + AAAL+S EGH C+ L+ + + LL+ Sbjct: 3 EFEAIDGQFAAFLQKLAGGSDPVLQSAAALVSLKTREGHTCVELNSGLDQDC---LLSPD 59 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVARFFNE--VNH 128 E W + L S V E P+IL RLYL+R + ++ A+ E V Sbjct: 60 CPE--NPAQWIDALANSPVVGAPGEYRPLILDQAGRLYLHRYYEDQALTAKKILEWSVPD 117 Query: 129 AIEVDEALLAQTLDKLF-PVSD-EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLA 186 D+ LAQ LD+LF P+ + E +WQK AAA A+ R+ SVISGGPGTGKTT A+++ Sbjct: 118 PAYTDQDRLAQELDRLFTPLPNSETDWQKAAAATAVLRKFSVISGGPGTGKTTIAARIIR 177 Query: 187 ALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 L+ +ADG I + APTGKAAARL ESLGK L +L + + IP+ A T+HRL+GA Sbjct: 178 LLLSLADGRAPSIAITAPTGKAAARLLESLGKELSRLGVPPGMEDAIPKRAKTIHRLMGA 237 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 + S + H+A NP++ D+L+VDEASM++L +M+RL++ALPDH ++I LGD+DQLASV Sbjct: 238 RFNSSQFIHNADNPINADILIVDEASMVELSLMARLLEALPDHGKLILLGDKDQLASVGP 297 Query: 307 GAVLGDICAYANA-GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 G+V+GDIC+ + F+ E AR L++ G +P+ G A + D + L K+YRF DS Sbjct: 298 GSVMGDICSGPGSQAFSPEWARVLAKAAGQAIPSENGL--APIADGIVHLVKNYRFAKDS 355 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 GIG+LA + RGD + +I + + A+LEE L +L + A+ Sbjct: 356 GIGELADCVVRGDAAGAAASLESG-GEIIYEPVNNPRTLPALLEEPL--REGFLPFITAK 412 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI--HRHPHSRWYEGRPVM 483 P ++AF +++LC +R+GP+G+ N +E + I +P WYE RPV+ Sbjct: 413 -NPAQALEAFGGFRVLCGVRQGPWGMNSANSLVEDIFARDGLILLRNYP---WYEKRPVV 468 Query: 484 IARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 + RND+ + LFNGD G+ +D + F ++ S LP H+T +AMTVHKSQG Sbjct: 469 VNRNDAEMNLFNGDHGVYMD----GKAAFPGLQEELRHYARSMLPAHDTAFAMTVHKSQG 524 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SEF+ LILP + +PV+TREL+YTAVTR R RL + + A+ + T R SGL Sbjct: 525 SEFESVLLILPGENSPVLTRELLYTAVTRTRSRLRIVGAMPSIKKAVLSPTRRPSGL 581 >UniRef50_A8FUM3 Exodeoxyribonuclease V n=7 Tax=Shewanella RepID=A8FUM3_SHESH Length = 683 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 276/679 (40%), Positives = 380/679 (55%), Gaps = 91/679 (13%) Query: 5 KQLLEAVEHKQL-RPLDVQFALTVA--------GDEHPAVT------LAAALLSHDAGEG 49 K LL+ E ++L PLD FAL +A EH T L ALLS + Sbjct: 9 KALLKVWESERLITPLDRHFALEMAQLHKIKLHKTEHADHTYSELFLLICALLSRQLSQQ 68 Query: 50 HVCLPLSRLENNEASHPLLATCV-----SEIGELQNWEECLLASQAVSRGDEP-TPMILC 103 H CLP+ ++ + ++ C +EI E+ + +S + + P TP+IL Sbjct: 69 HTCLPIHQIMLDNPMQEPISNCQILCSHNEIIEILAQFNAI-SSPGLEQASSPSTPIILD 127 Query: 104 GDRLYLNRMWCNERTVARFFN-----EVN-HAIEVDEALLAQTLDKLFPVSDEI-----N 152 LYL R + E VA + E+N E++ TL+ LFP SDE+ + Sbjct: 128 NGDLYLQRYYQFETQVASYLTLLADVEINEQPTEINHT--RSTLEMLFPQSDEMGATDFD 185 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 WQK+A A A T+R++VI+GGPGTGKTTTV KLL L Q A IRL APTGKAAARL Sbjct: 186 WQKIATATAFTKRLAVITGGPGTGKTTTVTKLLFLLTQQA---AMTIRLVAPTGKAAARL 242 Query: 213 TESLGKALRQL-----PLTDE----QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL 263 +ES+ + +L P D+ R+PE+ASTLHRLLG P S + RHH NPL L Sbjct: 243 SESIKASKVRLKMELAPFADQIDLTSLSRVPEEASTLHRLLGVIPNSPKFRHHKDNPLRL 302 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA-------Y 316 D+LVVDEASM+DLPMM +L+ ALP HAR+I LGD+DQLASVEAGAVL DICA Sbjct: 303 DLLVVDEASMVDLPMMHKLLSALPTHARLILLGDQDQLASVEAGAVLADICAGLKQKNTR 362 Query: 317 ANAG-------FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 NA ++++ A LS L+G + +++ + DSLC+L S+RF D+GIGQ Sbjct: 363 TNASDAKWQMRYSSDYAGYLSTLSGFDLSPFI-SQSPKIGDSLCMLMHSHRFKGDAGIGQ 421 Query: 370 LAAAINRGDKTAVKTVFQQDFTD---IEKRLLQSGEDYI-AMLEEALAGYGRYLDLLQ-A 424 LA A+N DK + V+Q + + IE +G + A+L +A+ Y RYL++ + Sbjct: 422 LAGAVNNSDKGRIMQVWQTGYDELLWIEHLKTNAGNSGLDALLTQAVEHYRRYLEMAKDD 481 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 + II +NE+++LCA+R G +GV G+N+ + ++Q + I + +Y GRPV+I Sbjct: 482 NKDASEIIDCYNEFRVLCAMRAGEYGVDGINQGVTAALKQAKLI--SADTEFYPGRPVII 539 Query: 485 ARNDSALGLFNGDIGIALDRGQGT------------------RVWFAMPDGNIKSVQPSR 526 ND LGLFNGDIG+ L T F DG+I V P+R Sbjct: 540 QSNDYNLGLFNGDIGLILPDDLNTVSDHLAQDGDTAKHSARLMAHFIQADGSILKVLPAR 599 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTP----VVTRELVYTAVTRARRRLSLYAD 582 LP H+T +AMTVHKSQGSEF + AL+LP +P ++T+ELVYTA+TRA+ + Sbjct: 600 LPSHDTCFAMTVHKSQGSEFANVALVLPIWPSPAQKQLLTKELVYTAITRAKLHFTCLGS 659 Query: 583 ERILSAAIATRTERRSGLA 601 + + A T+R SGLA Sbjct: 660 QAVFEHASLQATQRSSGLA 678 >UniRef50_Q7VRF0 Exonuclease V, alpha chain n=2 Tax=Candidatus Blochmannia RepID=Q7VRF0_BLOFL Length = 640 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 224/641 (34%), Positives = 358/641 (55%), Gaps = 54/641 (8%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHP--------------AVTLAAALLSHDAGE 48 +Q L + + K LD+QF+ + + P + LA+ +S Sbjct: 1 MQHLLKKIISLKLHNELDIQFSKMLITESFPCDNTNNYYHNIKKIVLMLASIYVSTYVRS 60 Query: 49 GHVCLPLSRLENN---EASHP-LLATCVSEIGEL--QNWEECLLASQAVSRGDEPTPMIL 102 GH CLP+ L + + HP L+ + + +L +W++ LL+S AV G TP++L Sbjct: 61 GHTCLPIYLLSSGKLFQNYHPDLIHEIIQKTKKLSTNDWQDILLSSSAVGDGSSITPLVL 120 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT-----LDKLF-PVSDEINWQKV 156 RLYL+ +W +E TVA+FF V+H+ D++ L QT L+KLF S EINW K+ Sbjct: 121 NNRRLYLHYIWEHECTVAKFF--VHHS--NDDSYLDQTKITIILNKLFLKTSKEINWHKI 176 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A A+++ +ISG GTGKT+T+A+++ AL + + RI++ PTGK+A LT + Sbjct: 177 ATALSMIHSRILISGEAGTGKTSTIAQIITAL--LLYNNKLRIKMVTPTGKSATVLTHAC 234 Query: 217 GKA---LRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL----DVLVVD 269 K L QL +++ + A+T+H LG + ++ + +L D L++D Sbjct: 235 HKIFNDLNQLHMSNVHTSDLK--ATTIHNFLGLKLYNKYKYQYQYYSNYLNTNIDCLIID 292 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 EASMI L ++S+LI L ++ +VI +GD QL +E+G+V DIC ++N G++ ++ +L Sbjct: 293 EASMISLSLLSQLIMHLSNNTKVILIGDHHQLHPIESGSVFQDICQFSNFGYSIQQQEKL 352 Query: 330 SRLTGTHVPAGTGTE-----AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 +LT + + ++ D +C+ +K+YRF +SGI LA ++ GD +T Sbjct: 353 KKLTNHTLSMNNSSYTQNNYCNTIADKICIFKKNYRFHKNSGIIHLAKSVKIGDYN--QT 410 Query: 385 VF---QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA-RAEPDLIIQAFNEYQL 440 +F + +TD+ LQ +DYI ++ Y YL ++Q + ++ F Y++ Sbjct: 411 LFILHSKQYTDLSYNHLQKKKDYINLIIHCAKKYSNYLKIIQNNKVSIKHALKIFEYYRI 470 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 LCALR GPFGV LN IEQ + + I + HS Y GRP++I +N+ +L L+NG+IG+ Sbjct: 471 LCALRHGPFGVTQLNHYIEQVLNDQSLITLN-HSGNYIGRPIIILQNEPSLELYNGEIGL 529 Query: 501 ALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP 559 L Q +F IK++ ++LP +ET +AMT+HK+QGSEF H ++I P TP Sbjct: 530 LLLNSQNYLSAYFLSSLHEIKTIPINQLPSYETCFAMTIHKAQGSEFQHISIIFPYHHTP 589 Query: 560 VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 ++TREL+YTA+TRAR+ L LYA + +L I R SGL Sbjct: 590 ILTRELLYTAITRARQHLDLYATDNVLIHTINLMNHRYSGL 630 >UniRef50_A9L0I2 Exodeoxyribonuclease V, alpha subunit n=12 Tax=Shewanella RepID=A9L0I2_SHEB9 Length = 740 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 272/705 (38%), Positives = 368/705 (52%), Gaps = 131/705 (18%) Query: 16 LRPLDVQFALTVA-----GDEHPAVTLAAALLSHDAGEGHVCLPLSRL-----ENNEASH 65 L PLD FAL ++ +HP L ALLS H CL L+ + ++SH Sbjct: 43 LTPLDRHFALEMSHLHPSDSQHPLFILLCALLSQQLSSQHSCLVLAHIVPLNPMAEQSSH 102 Query: 66 PLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA----- 120 C + L+ E L AV + P+I RLYL R E +VA Sbjct: 103 -----CKISLS-LEALTETLQTFDAVGQAGSNKPLIFDNGRLYLQRYHQFETSVAASLIR 156 Query: 121 -------RFFNEVNHAIEVDEALLAQTLDKLFP--VSDE--------------------- 150 F EVNH + A L LD+LFP VSD Sbjct: 157 LSGSVSKHFSEEVNHQEQTQTAKLRSLLDQLFPATVSDPHSLTTNVLTTSVITKSDSTQS 216 Query: 151 ---INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 I+WQKVA A AL ++++VI+GG TT L L+QM + IRL APTGK Sbjct: 217 TAPIDWQKVATATALGKKLAVITGG-PGTGKTTTVTKLLLLLQMESQQE--IRLVAPTGK 273 Query: 208 AAARLTESLGKALRQLP--------LTDEQKKR-----------IPEDASTLHRLLGAQP 248 AAARL+ES+ + +L + DE + R IPE+ASTLHRLLG P Sbjct: 274 AAARLSESIKASKARLAKELSAHTDVVDEARNRNNQDFLTALGRIPEEASTLHRLLGVIP 333 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 S RHH GNPL LD+L+VDEASM+DLPMM +L+ ALP+HA +I LGD+DQLASVEAGA Sbjct: 334 NSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQLASVEAGA 393 Query: 309 VLGDIC-----------------AYANAG-----FTAERARQLSRLTGTHVPAGTGTEAA 346 VL DIC A N+ ++ E+A +LS LTG + ++A Sbjct: 394 VLADICAGLKMPVEPNNLAQNNTASNNSALWQMRYSKEQAERLSALTGFELTPYI-SDAP 452 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ---DFTDIEKRL-LQSGE 402 L DSLC+L S+RF D+GIGQLA+A+NR D + V+QQ + + +E + L + Sbjct: 453 KLGDSLCMLMHSHRFKGDAGIGQLASAVNRADLQGILQVWQQGPAELSWLEHSMALSQTQ 512 Query: 403 DYIA----------MLEEALAGYGRYLDLLQA---------RAEPDLIIQAFNEYQLLCA 443 ++ +LE+A YG YL L + R II++FN+Y++LCA Sbjct: 513 AKVSEPANNMGLNLLLEQACQQYGIYLSALNSDENHSDLSKRPSTAEIIESFNQYRILCA 572 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL- 502 +R G +GV G+N+ + Q + + I P +Y GRP++I ND LGLFNGDIG+ L Sbjct: 573 MRSGDYGVEGINQYVTQALANAKLI--KPLQEFYLGRPIIIQSNDYNLGLFNGDIGLILQ 630 Query: 503 --DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-- 558 D+ + F DG++ V P+RLP HET +AMTVHKSQGSEF AL+LP + Sbjct: 631 DEDKPERLMAHFIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALVLPPNPSLA 690 Query: 559 --PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 ++T+ELVYTA+TRA+ + + + A + T+R SGLA Sbjct: 691 QWQLLTKELVYTAITRAKVHFTCLGTQHVFERASSQATQRASGLA 735 >UniRef50_Q89AB2 Exodeoxyribonuclease V alpha chain n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX5A_BUCBP Length = 618 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 196/590 (33%), Positives = 335/590 (56%), Gaps = 17/590 (2%) Query: 26 TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE---ASHPLLATCVSEIGELQN-- 80 T+ +++ T + ++H GHVCLP +++ + +H L T + EI ++ Sbjct: 25 TMLFNKNTLATFLSICVNHFTNHGHVCLPHVLIQHQKIFFTNHIALITKLWEIAKINTCG 84 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 W E LL S +S G + TP I + Y+N+ W E+ + +F ++ + +++ + + Sbjct: 85 WIEQLLNSNTISNGSKNTPFIFYKNNFYINKFWLAEQKILKFISQKQNFKLINKNKIQKI 144 Query: 141 LDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR 200 L +F + + + QK+A +++ I+ I GGPGTGKTT + K+L L ++ I+ Sbjct: 145 LKNIFNTNID-DTQKLAIILSIINNITFIIGGPGTGKTTIILKILLVL-IRLHKKKINIK 202 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 L A TGKAA RL+ES+ + +++L LT+ +K + +TLH LL +P N Sbjct: 203 LTALTGKAANRLSESIHENIKKLNLTEHEKNIFNQKTTTLHNLLDLKPNKSFNYSCCKNK 262 Query: 261 LH-LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA 319 L+ L++L++DEASMID+ +M +LI ++P ++IFLGD +QL S+ G +L +IC+Y Sbjct: 263 LYNLNLLIIDEASMIDITIMDKLISSIPKTTKIIFLGDYNQLPSISGGNILKNICSYYQE 322 Query: 320 GFTAERARQLSRLTGTHVPAGT--GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 GF+ + L +L + T + +++ D + +L+KSYRF S I +++ + + Sbjct: 323 GFSTTTNKFLKQLFPNRITIKTIKKHQFSNINDKIIMLKKSYRFKKKSDIFKISEMLTKN 382 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 +KT++Q D+ + + S +Y ++ E Y +Y L+ II FN Sbjct: 383 KINNIKTLYQNINNDVNFKQISSKTNYNNIIFEITNSYSKYWSALKQSLPFLKIINIFNN 442 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLF 494 Y++LC L+ G FG+ LN IE+ M++ +K+ WY G+P++I +N+ + LF Sbjct: 443 YKILCILKNGLFGITELNLAIEKEMKKIGWIKKVTIINGQTWYFGKPILILKNNEEMNLF 502 Query: 495 NGDIGIAL-DRGQGTRVWFAMPDGN--IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 NG+ G+ L D + +V+F +P I S+ +PEH+T W MTVHKSQGSEF L Sbjct: 503 NGECGLTLLDANKKLKVFF-LPKNQEQIYSIPIHLVPEHQTNWTMTVHKSQGSEFSEVVL 561 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 ILP+ T ++T+EL+YTAVTR++++L++Y+DE I ++ R SGL+ Sbjct: 562 ILPTIMTSILTKELIYTAVTRSKKKLTIYSDENIFIKSLKKNIIRYSGLS 611 >UniRef50_Q02HF8 Exodeoxyribonuclease V alpha chain n=27 Tax=Bacteria RepID=Q02HF8_PSEAB Length = 721 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 289/670 (43%), Positives = 366/670 (54%), Gaps = 74/670 (11%) Query: 3 LQKQLLEAVEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL- 58 L +QL V LR LD V F + + P V LAAAL SH G GHVCL L Sbjct: 30 LLRQLDLWVARGWLRALDRAFVAFLVELQPQADPRVLLAAALTSHQLGHGHVCLDLEATL 89 Query: 59 -----------ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE----------- 96 E +E LL + + L W E L AS V DE Sbjct: 90 GAPDAALSLPPEGDEGRDVLLPSQLLRGVRLDAWREALAASSLVEVVDERPGDPEPSETA 149 Query: 97 PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDE--- 150 +P++LC RLYL R W +E +A E A LA L LF P D Sbjct: 150 TSPLVLCAQRLYLRRYWRHELEIALALRERLGRQAPLAADLAPRLAALFAQAPTEDGQRV 209 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL--IQMADGERCRIRLAAPTGKA 208 +WQK+A A+A S+I+GGPGTGKTTTV +LL L +A G+ RIRLAAPTGKA Sbjct: 210 TDWQKLACALAARGYFSLITGGPGTGKTTTVVRLLGLLQAPAVAAGQPLRIRLAAPTGKA 269 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 AARL+ES+G+ +R LPL ++ + IP + +TLHRLLG++P ++ RHH NPL LDVLVV Sbjct: 270 AARLSESIGQQVRALPLAEDVLQAIPAEVTTLHRLLGSRPDTRHFRHHRDNPLALDVLVV 329 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERAR 327 DEASMIDL MM+ L+DALP AR+I LGD+DQLASVEAGAVLGD+C A G ++AE Sbjct: 330 DEASMIDLEMMASLLDALPPQARLILLGDKDQLASVEAGAVLGDLCRDAEEGWYSAETRA 389 Query: 328 QLSRLTG-THVPAGTGT-EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR---GDKTAV 382 L R++G T G+ +A L +L+ S RFG+ SGIG+LA +NR GD A+ Sbjct: 390 WLQRVSGETWQGLREGSAQAHPLAQQTVMLRHSRRFGASSGIGRLARLVNRQQAGDARAL 449 Query: 383 KTVFQQDFTDIE---------KRLLQSGED-----------YIAMLEEALAGYGRYLDLL 422 D D+ RL G Y+ L E G L+ Sbjct: 450 LDSPPADLFDLRLRGERDAAFARLFVDGHPQAPGTPYGYRHYLQRLAEGRPAAGLALEDG 509 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 ++ AF+ ++LLCALR GP+GV GLN+R+ + + I H WYEGRPV Sbjct: 510 AWERWAQSVLTAFDAFRLLCALRRGPWGVEGLNQRVAAELLRLGLIEAD-HG-WYEGRPV 567 Query: 483 MIARNDSALGLFNGDIGIAL------DRGQ---GTRVWFAMPDGN--IKSVQPSRLPEHE 531 ++ RND +LGL NGDIGIAL D G RV F DG+ ++ V PSRL E + Sbjct: 568 LVTRNDYSLGLMNGDIGIALRLPERNDDGSLRFALRVAFPRNDGSGGVRFVLPSRLVEVD 627 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAI 590 T +AMTVHKSQGSEF H AL+LP PV+T+ELVYT +TRAR SL + A+ Sbjct: 628 TVFAMTVHKSQGSEFAHTALVLPDALNPVLTKELVYTGITRARDWFSLVESLPGVFEEAV 687 Query: 591 ATRTERRSGL 600 + R SGL Sbjct: 688 RRKVRRLSGL 697 >UniRef50_Q3IJ15 Exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=3 Tax=Alteromonadales RepID=Q3IJ15_PSEHT Length = 671 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 242/627 (38%), Positives = 348/627 (55%), Gaps = 41/627 (6%) Query: 11 VEHKQLRPLDVQFALTVAG------DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEAS 64 + ++R +DV+ A ++ + H + LL H CL LS ++ S Sbjct: 43 LSENRIRIVDVKLAEMLSKSNSDSENTHNEMFYLVLLLCLSQQSQHSCLTLSEVD---WS 99 Query: 65 HPL-------------LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNR 111 +P + +S E N+E+ L Q + P+ L RLY R Sbjct: 100 NPFNLRRSDFSKTQGSVPDKLSPFSEGFNYEQVLSYLQNHTSVGANKPLQLFNQRLYFAR 159 Query: 112 MWCNERTVA-RFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRISV 168 + E+T+A R + ++ LLA L++ F I +WQKVA A+A T+ SV Sbjct: 160 LAGYEQTLASRLITMSERTLNINNELLAALLNEYFTPDANIATDWQKVACAIAATKGFSV 219 Query: 169 ISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES-LGKALRQLPLTD 227 I+GGPGTGKTTTV KLLA L + I+L APTGKAAARL+ES LG + + Sbjct: 220 ITGGPGTGKTTTVTKLLAILQSLYKTAPLSIKLVAPTGKAAARLSESILGAKDKLTNIPA 279 Query: 228 EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 + + IPE A T+HRLLG +P + + RH+ NPLHLDVL++DEASM+DL +M++LI+ALP Sbjct: 280 DIRTLIPESAQTIHRLLGVKPFTNKFRHNKANPLHLDVLIIDEASMVDLSLMAKLIEALP 339 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICA----YANAGFTAERARQLSRL--TGTHVPAGT 341 HAR+I LGD+DQLASV+ G+V+ D+C G++ R +L+ L G Sbjct: 340 AHARLILLGDKDQLASVDTGSVMSDLCQGLVLGQTPGYSPARCDELNNLCFNGEAKLIAQ 399 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 A L D + LQ SYRF + SGIGQLA A+N + T V +Q+ + + + Sbjct: 400 SNSAFKLADCIAFLQHSYRFDAQSGIGQLALAVNTNN-TGVLNYVEQESVEGRFKDVILD 458 Query: 402 EDYIA-----MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE 456 D+IA +++ A + Y YL L+ A + +AF YQLL A+REG +GV LN+ Sbjct: 459 YDFIAKPIEKLVKSAASKYTHYLSLIAQGASVAEVHKAFASYQLLAAVREGDYGVNSLNQ 518 Query: 457 RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMP 515 RIE+ +QQ+ I P+ R Y G P+M+++ND L LFNGDIGI + D + F Sbjct: 519 RIERVLQQQGLITLSPNQRHYTGMPIMVSQNDYQLKLFNGDIGILMPDESGQLKALFIDE 578 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP--SQRTPVVTRELVYTAVTRA 573 GN ++ P+RLP H+ + MT+HKSQGSEF + A++LP Q + R+LVYT +TRA Sbjct: 579 QGNQRAFSPARLPAHDKVYVMTIHKSQGSEFSYTAMVLPPLKQARMGINRQLVYTGITRA 638 Query: 574 RRRLSLYADERILSAAIATRTERRSGL 600 + L AD+++L A+ R SGL Sbjct: 639 KNTFELVADKKVLLLAMNKSVSRASGL 665 >UniRef50_B4X4Z2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4Z2_9GAMM Length = 688 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 253/583 (43%), Positives = 337/583 (57%), Gaps = 46/583 (7%) Query: 35 VTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATC-----VSEI-GELQNWEECLLAS 88 V L AA S+ GH+CL L+N E + L T VS + G+ +W L S Sbjct: 46 VLLLAAFTSNQQASGHLCL---DLKNRELATQLWGTSPPPELVSLLPGKPDDWLHDLQHS 102 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE-VDEALLAQTLDKLFP- 146 VS+ D TP++L G RLYL R W E +VA ++ + + L L +LFP Sbjct: 103 PLVSQ-DGSTPLVLDGSRLYLRRNWAREVSVAEAISQRLATVSPLPAERLRDALARLFPN 161 Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL--IQMADGERCRIRLAAP 204 D+ +WQ+VA A+A I +I+GGPGTGKTTTV +LL L + M + +R RIRLAAP Sbjct: 162 AGDQTDWQQVACALASRSGIGIITGGPGTGKTTTVVRLLGLLQSLAMTENQRLRIRLAAP 221 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TGKAAARLTES+G+ + +L + + IP + +TLHRLLG +P S+ RHHA NPLH D Sbjct: 222 TGKAAARLTESIGEQVEKLEVETAVRDAIPTEVTTLHRLLGTRPDSRHFRHHADNPLHAD 281 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 ++VVDEASMID+ MM+ L++AL H R+I LGD+DQLASVEAGAV+GD+C +A+ G + Sbjct: 282 LVVVDEASMIDMDMMASLLEALSPHTRLILLGDKDQLASVEAGAVMGDLCRHAHQGRYQQ 341 Query: 325 RARQLSRLT-GTHVPAGTGTEAA---SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 + R T G + TE A +L +L+ ++R GIG+LA A+N + Sbjct: 342 GTIEFVRDTCGADISGYQETEQAPGNALAQQTAMLRTNWRSKDSPGIGELARAVNEENLP 401 Query: 381 AVKTVFQQDFTDIEKRLLQS-GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEY- 438 V+ FQQ + + L+S G+ +L + L QA A P + F+ + Sbjct: 402 QVRKAFQQYDDSLHRHPLRSDGQQLETLLLNGSGDHSGLRALFQAVATPPAQREEFDGWA 461 Query: 439 ----------QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND 488 QLL LR GPFGV LN+RI + +QQ+ P WY GRPVM+ RND Sbjct: 462 AALLKQLTHQQLLSGLRSGPFGVEQLNQRITRHLQQQDLA---PEREWYPGRPVMMTRND 518 Query: 489 SALGLFNGDIGIAL--------DRGQGT-----RVWFAMPDGNIKSVQPSRLPEHETTWA 535 LGL NGD+G+ L + G RV F +PDG IK V PSRL ET +A Sbjct: 519 YQLGLMNGDVGLTLPLLEEKKREERNGKPALLLRVAFQLPDGRIKWVLPSRLDGVETVYA 578 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 MTVHKSQGSEF H L+LP P++TREL+YTAVTRAR R + Sbjct: 579 MTVHKSQGSEFRHTLLVLPDAPHPLLTRELIYTAVTRARDRFT 621 >UniRef50_B5EPU7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU7_ACIF5 Length = 650 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 257/640 (40%), Positives = 346/640 (54%), Gaps = 60/640 (9%) Query: 16 LRPLDV---QFALTVAGDEHPAVTLAAALLSHDAGEGHVCL--------PLSRLENNEAS 64 LRPLD+ QF + + + LA ALL+ GEGH C+ P L+ Sbjct: 22 LRPLDLAFAQFLIRLDPQAPALLPLAGALLARLEGEGHTCIALEDFLGAPERFLDWPAPG 81 Query: 65 HPLLATCVSEIGELQNWEECLLASQAV----------SRGDEPTPMILCGDRLYLNRMWC 114 H +LAT + + W E L S+ V + G E TP++L RLYL R W Sbjct: 82 HAMLATALGDWPHAAQWTETLARSRCVQVTERNAPVPANGAE-TPLVLSAARLYLRRYWR 140 Query: 115 NERTVARFFNEVNHAIEVDEA---LLAQTLDKLFPVSDE----INWQKVAAAVALTRRIS 167 +++ +A + D A L L++LFP SDE + WQK+A A+AL S Sbjct: 141 DQQFIAEALRQRAQQRVADAANPEALRPWLEQLFPASDEPGDALPWQKIACALALRSHFS 200 Query: 168 VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 +I+GGPGTGKT T A+ +A L+ RI LAAPTGKAA R+ ESL A+ LP Sbjct: 201 IITGGPGTGKTYTAARFMA-LLMATSSTPLRIVLAAPTGKAAVRIDESLQSAVGTLP--- 256 Query: 228 EQKKRIPE---------DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 Q +IP+ A TLH LLGA+P S+R RH A NPL LDVLVVDEASMI M Sbjct: 257 -QLSQIPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLELDVLVVDEASMIHQEM 315 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 M+ L+ ALP AR+I LGD+DQLASVEAGAVL ++ + + + AE + G P Sbjct: 316 MAALLRALPPAARLILLGDQDQLASVEAGAVLAEL-SLGSGKYDAETCHYMQASCGA-AP 373 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 + L ++ LQ+S+RF ++ IG LA A++ G + Q T Sbjct: 374 RPGDNGPSPLAANIIRLQRSHRFNAE--IGALADAVHGGHPETAVRILQTAHTGTLAWQP 431 Query: 399 QSGEDYIAMLEEALAGYGRYL---------DLLQARAEPDLIIQAFNEYQLLCALREGPF 449 I L + YGR D Q A I+ + +++LCALR+GP+ Sbjct: 432 APAIHRILELARPESAYGRVWQAAGQPPPKDRQQHSAWVKTILNDYAGFRILCALRQGPW 491 Query: 450 GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGT 508 GV G+N IE ++Q++ + WY GRP ++ RND LGL NGDIGIAL D + Sbjct: 492 GVTGINRAIEDYLQRQGILQS--RGLWYAGRPTLVTRNDPNLGLSNGDIGIALPDPDKRL 549 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 RV+F + +++ PSRL E+ WAMTVHK+QGSEF H LILP + +PV++REL+YT Sbjct: 550 RVYFPNSEEAPRAILPSRLNHTESAWAMTVHKAQGSEFAHTVLILPPEDSPVLSRELLYT 609 Query: 569 AVTRARRRLSLYADERILSAAIATRTERRSGL-AALFSSR 607 A+TRAR+ +L A L AI +T R SGL AAL+ R Sbjct: 610 AITRARKCFTLIAPRERLENAIQRQTRRMSGLHAALYDPR 649 >UniRef50_C0N790 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N790_9GAMM Length = 578 Score = 364 bits (934), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 238/606 (39%), Positives = 342/606 (56%), Gaps = 46/606 (7%) Query: 7 LLEAVE--HKQ-LRPLDVQFALTVAGDE---HPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 + EA++ H+Q + L QFA + E V+L A LL+ +GHVCL L+ Sbjct: 1 MTEAIKLLHQQGVSGLACQFATFIDRKEAGKSTVVSLTAGLLTEAMSQGHVCLNLANPP- 59 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTV 119 E H L A + + W++ L +++V + + TP+IL LYL R W +E+ V Sbjct: 60 -EIIHQLNAFLPNNATD---WQQQLREAKSVGKPGDYTPLILTESGLLYLYRFWRDEQDV 115 Query: 120 ARFFNEVNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 A + HA++ V+ L Q L ++WQKVA A+AL+R ++VISGGPGTGKT Sbjct: 116 AHAIMQRRHAVDNVNLEQLQQDLANWHNPIAGVDWQKVAVAMALSRHLAVISGGPGTGKT 175 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T V K+L L +D RI LAAPTGKAAARL +S+ + + + Sbjct: 176 TIVLKILQCLQNQSDS--LRIGLAAPTGKAAARLQQSISQ-------------QQTAEVK 220 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 TLHRLLG + + R++A PL LDVL++DEASMID+ +M++L+ A+P AR+I LGD Sbjct: 221 TLHRLLGITEHNDQGRYNAERPLPLDVLIIDEASMIDISLMAKLMRAMPAKARLILLGDS 280 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRL---TGTHVPAGTGTEAASLRDSLCLL 355 QLASVE+GAVL ++ FTA+ Q L TH E A L DS L Sbjct: 281 QQLASVESGAVLANLSESQQGTFTADFVAQFPALGLEDNTH-----QNETALLIDSFVRL 335 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 Q SYRF +S +GQLA +N D + + I R D ++L GY Sbjct: 336 QHSYRFDKESLVGQLADHVNAADAETTLQLLNEQTEAIWFR-----TDERSLLNVLTTGY 390 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 +++ ++ R P IIQAF+++++L AL++GP V +N + +F+ QK + Sbjct: 391 NAFINAVENRLPPQDIIQAFDQFRVLAALKQGPQSVMSVNRLMSRFLAQK---GWRTNQT 447 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTW 534 +Y GRP+MI +ND LFNGDIGI L G + F + ++ V +RLP HET + Sbjct: 448 FYSGRPIMITQNDYRQQLFNGDIGIILRDADGHLKACFYFGEA-LRWVSLNRLPAHETVF 506 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 AMTVHKSQGSEFD +++LP + +P+++REL+YTA+TRAR+ L++ A E +L I R Sbjct: 507 AMTVHKSQGSEFDAVSILLPDEISPILSRELLYTAITRARKTLTILAVENVLKHTIHRRH 566 Query: 595 ERRSGL 600 +R SGL Sbjct: 567 QRESGL 572 >UniRef50_B3ECZ3 Exodeoxyribonuclease V, alpha subunit n=7 Tax=Chlorobiaceae RepID=B3ECZ3_CHLL2 Length = 588 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 238/603 (39%), Positives = 341/603 (56%), Gaps = 39/603 (6%) Query: 17 RPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 R +D Q A + DE + +LLS G+G+VCL L + P + Sbjct: 8 RSIDRQIAEYLCRSINDETGVMRTVVSLLSQAVGQGNVCLDLEEVAGEVVRIPGREEPL- 66 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTVAR--FFNEVNHAI 130 + +++ L + V R E P+IL RLYL R + + T+A Sbjct: 67 RLPDIERLVSALRSLHTVGRPGEHRPLILDEAGRLYLYRYFRYQETLAEAILARAATETG 126 Query: 131 EVDEALLAQTLDKLF-PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 DEA L+++LD+ F P + Q+ AA AL R SVISGGPGTGKTTTV ++L ++ Sbjct: 127 SPDEAALSESLDRYFGPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVVRILGLML 186 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG 249 + GER RI +AAPTGKAAARL S+ LP ++E K+ +P +T+HRLLG P Sbjct: 187 EQPGGERMRIAMAAPTGKAAARLASSIASLRETLPCSEEVKRHLPGQVTTIHRLLGTIPN 246 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 S RH+A NPL D ++VDEASM+DLP+M+ L+ AL HAR+I +GDRDQLASVEAGAV Sbjct: 247 STGFRHNARNPLPYDTIIVDEASMVDLPLMTALVTALMPHARLILIGDRDQLASVEAGAV 306 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 LGDIC A + +G+ A S++ + +L ++YRFG SGI Sbjct: 307 LGDICRAAES---------------------SGSAAFSIKGCVTVLDRNYRFGDGSGIAS 345 Query: 370 LAAAINRGDK-TAVKTVFQQDFTDIEKRLLQSGEDYIAML-EEALAGYGRYLDLLQARAE 427 L+ AIN GD A++ + T I + E L L G+ YL+ Sbjct: 346 LSRAINSGDAGEALRLLGDPANTTIALEATPTREAVRKRLAARVLEGFRPYLEA----ET 401 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 P+ ++ F+ +++L ALREGP+G AG+N +E + + + + +Y GRPV++ N Sbjct: 402 PEEALRLFDHFRILTALREGPWGAAGMNHTVETLLHEAGLL--TASTPFYRGRPVLVTEN 459 Query: 488 DSALGLFNGDIGIAL-DRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 D LFNGD GI L D G + +F DG ++S+ P LP H T +AMTVHKSQGSE Sbjct: 460 DYTHKLFNGDTGIILPDPETGKQKAYFIASDGTVRSIPPEFLPAHVTAFAMTVHKSQGSE 519 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 FD ++LP + T ++TREL+YT +TRAR+ +++++DE + SA++ RTERRSGL + Sbjct: 520 FDRVLMVLPPEDTILLTRELIYTGITRARQAVTVWSDETVFSASVKRRTERRSGLREMLV 579 Query: 606 SRE 608 ++ Sbjct: 580 DKQ 582 >UniRef50_A8ZX10 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX10_DESOH Length = 609 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 231/582 (39%), Positives = 321/582 (55%), Gaps = 37/582 (6%) Query: 37 LAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIG--ELQNWEECLLASQAVSR- 93 LAAAL GHVC L+R + L + + + + W + L S V+R Sbjct: 38 LAAALTLWHTRRGHVCFDLNRAD------AFLTDGLDGVSLPDGRQWADILSRSAVVARP 91 Query: 94 GDEPTPMILCGD-RLYLNRMWCNERTVARFFNEVNHAI-EVDEALLAQTLDKLFPVSDEI 151 G +P P++L G+ RLYL+R W + +A F I +VD L + L + FP Sbjct: 92 GGDPAPLVLDGEGRLYLHRYWAYQEQLADFIRSRAGIIRKVDAHRLKEGLTRWFPGQGPG 151 Query: 152 N---WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208 N Q+VAA ALT SVI+GGPGTGKT T A++LA L + A+ L APTGKA Sbjct: 152 NGPDMQRVAAVSALTHDFSVITGGPGTGKTLTAARILALLAEQAENRPLAAVLTAPTGKA 211 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 AARL E++ LR + R+ A T+HRLLGA PG+ RHH NP+ DV+VV Sbjct: 212 AARLGEAM-STLRGAVPGPASENRLEVRACTIHRLLGALPGTTVFRHHRHNPIAADVVVV 270 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERAR 327 DEASM D+ +M++++DALPDH R+I +GD+DQLASV AG+V DIC A F+A+ + Sbjct: 271 DEASMADVALMAKMVDALPDHCRLILVGDKDQLASVAAGSVFADICGAAGRNRFSADFLQ 330 Query: 328 QLSR---LTG--THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK--- 379 L LTG PAGT A L ++ L+ YRF G+ ++ + G Sbjct: 331 ALEAAGVLTGGMKAFPAGT----ARLAGNVVHLETVYRFEHRGGMEMVSRLVREGAAGEI 386 Query: 380 -TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEY 438 A+ T QD T E++ L + + + D L A P++++ + Sbjct: 387 VEALATPGHQDVTWTAP----DQEEWRERLARTVTAWVK--DCLSVSANPEMVLDRLGSF 440 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 ++LCALREGP G LN +E +Q+ + WY GRPVM+ +ND +L LFNGD+ Sbjct: 441 RVLCALREGPAGALALNRSVEHSLQRAGVVA--SGRLWYAGRPVMVLKNDYSLELFNGDV 498 Query: 499 GIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 GI L G V+F G ++ P R+PEHET +AMTVHK QGSEF+ ++P + Sbjct: 499 GITLWDGDRLSVFFKDDRGGVRKFHPGRIPEHETVYAMTVHKGQGSEFEKVVFVMPDRDG 558 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 PV+TRELVYTA+TRAR + + + I+ AA++ RRSGL Sbjct: 559 PVLTRELVYTALTRARSHIEIIGKKDIIEAAVSRSVSRRSGL 600 >UniRef50_A3MYX5 Exodeoxyribonuclease V alpha chain n=11 Tax=Pasteurellaceae RepID=A3MYX5_ACTP2 Length = 645 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 255/655 (38%), Positives = 365/655 (55%), Gaps = 70/655 (10%) Query: 7 LLEAVEHKQLRPLDVQFALTV--AGDEHPAV-------TLAAALLSHDAGEGHVCLPL-- 55 L E E + LD QFA + +P L AAL+S +GH + L Sbjct: 5 LYELKETNVISELDYQFAKMIDRKQQSYPYTEQQKNLAVLLAALVSFHVMQGHAAIRLDS 64 Query: 56 --SR----LENNEASHPLLATCVSEIGELQ--NWEECLLASQAVSRG-DEPTPMILCGDR 106 SR L N L + +IG + W+ L A S + PM+ Sbjct: 65 QASRFFFGLSNRNEEKALNDEILQKIGGITPLEWQGVLQNHIAFSSDPKQVAPMLFQHGL 124 Query: 107 LYLNRMWCNERTVARFFNEVNHAIEVDE-----ALLAQTLDKLFPVSDEINWQKVAAAVA 161 LY R W E +A N + A+E E AL Q L+KLF SDE+NWQK+A A A Sbjct: 125 LYFYRYWQAENNIA---NYLVKAVEFPEQIANTALDKQILEKLFEKSDEVNWQKIAVATA 181 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAAL--IQMADGE-RCRIRLAAPTGKAAARLTESLGK 218 + ++ S+ISGGPGTGKTTTVAKLLAAL Q+ G+ + L APTGKAAARL ES+ Sbjct: 182 IKQKFSIISGGPGTGKTTTVAKLLAALQEKQLRSGKAMLNVALVAPTGKAAARLKESITL 241 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 +L L L E IP AST+HRLLG +P S R+H+ NPLH+D+LVVDEASMIDL + Sbjct: 242 SLSVLNLNFE----IPTTASTIHRLLGIRPQSDEPRYHSKNPLHIDLLVVDEASMIDLFL 297 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTH-V 337 M +L+ AL + R+I LGD+DQLASVEAGA++G++ A+ G++ + L+++T V Sbjct: 298 MEKLMAALKPNTRLIILGDKDQLASVEAGAIMGELGAFLQQGYSRKHCDYLNQVTEYQLV 357 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR--------------GDKTAVK 383 P G ++ + DSLC L+KSYRF ++SGIGQLA +N D + ++ Sbjct: 358 PKG---KSLPICDSLCHLKKSYRFDANSGIGQLAKLVNEKQAVESWQLFAKGSADLSLIE 414 Query: 384 TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR------AEPDLIIQAFNE 437 DF + +++ +Q+ I ++A+ Y YL L++ R + I + F + Sbjct: 415 YAHTSDFPE-KQQWIQNCVKQIT--DKAVELYKEYLTLVKQRYNNPTKVSVNEIFEVFQK 471 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 + L ALR GV LN+RIE + + I +Y G+P++I +N +++GD Sbjct: 472 VRFLSALRISELGVEQLNKRIETALAAAKLISLEQSKNYYIGKPLLITQNSPQNHIYSGD 531 Query: 498 IGIAL-DRGQGTRVWF--AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 IGI L D +RV+F + DG + S+ +RLPE E + MTVHKSQGSEF+H LI P Sbjct: 532 IGIILPDENGISRVYFDTKIDDGYL-SLSLNRLPEFEPAYVMTVHKSQGSEFEHTLLITP 590 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA----LFS 605 PV+++EL+YTA+TRA++ +L+ ++++ A+ +R+SGL A LFS Sbjct: 591 LHFAPVMSKELIYTAITRAKKHFTLFGEKQVWLQAVNNNLQRQSGLKAQLMHLFS 645 >UniRef50_C5CL22 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Betaproteobacteria RepID=C5CL22_VARPS Length = 708 Score = 357 bits (917), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 252/630 (40%), Positives = 340/630 (53%), Gaps = 85/630 (13%) Query: 44 HDAGEGHVCLPLSRLENN---------EASHPLLATCVSEIGELQNWEECLLASQAVSRG 94 H G GH CL L L + E + L S G++ W S V Sbjct: 70 HMEGRGHSCLRLDELLRDPQAVLGWPPEPAAALRVALDSLPGDVDIWIATFQTSPLVGSD 129 Query: 95 DEPT---------PMILCGDRLYLNRMWCNERTVARFFNEVNHA-IEVDEALLAQTLDKL 144 D + P++L G LYL R W +ER VA + + + + VD + LD+L Sbjct: 130 DGASRSTTIDAHPPLMLRGHTLYLRRYWEDERRVAAQVDARSRSELPVDPVTVRMWLDRL 189 Query: 145 FPVSDE--------INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-E 195 FP I+WQK A AVAL ++S+++GGPGTGKT T A+LLA L + E Sbjct: 190 FPADTHASPDSEAAIDWQKAACAVALRSKLSILTGGPGTGKTYTAARLLALLYAVDPAPE 249 Query: 196 RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED------------ASTLHRL 243 R RI LAAPTGKAAARL +++ +L +L + R+ + A TLH L Sbjct: 250 RLRIALAAPTGKAAARLKQAIETSLTEL------QDRLGDSLSLGALAAHIGAARTLHAL 303 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 LGA+P ++ A +PL +DV++VDEASMI L MM+ L++ALP ARVI LGD+DQLAS Sbjct: 304 LGARPDTRAFGFDAAHPLDVDVVIVDEASMIHLEMMAALLEALPTQARVILLGDKDQLAS 363 Query: 304 VEAGAVLGDICAYANAG-FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 VEAGAVLGD+C +A G + A + +G H+PA + L +L+ S RFG Sbjct: 364 VEAGAVLGDLCRHAEHGLYRLSTAAYVEAASGQHIPAAYMGDGPPLAQQTVMLRASKRFG 423 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFT-----------DIEKRLLQSGEDY------I 405 IGQLA A NRGD A + + + D + RL G D + Sbjct: 424 --GAIGQLALAANRGDSAAAEALLRDDSSPAVAWLDGGSASTAVRLALQGRDAAGEAGGV 481 Query: 406 AMLEEALAGYGRYLDLLQARAEPD----------LIIQAFNEYQLLCALREGPFGVAGLN 455 A GYG YL LQAR D +++AF +++LCA+REG +G GLN Sbjct: 482 DDAVGAYGGYGVYLTALQARPRGDEAPAHAGWTLAVLRAFERFRVLCAVREGEWGAMGLN 541 Query: 456 ERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWF 512 + IE+ + + ++ + WYEGRPV++ RND+ LG+FNGDIGI L +G R +F Sbjct: 542 QAIERALVAEGRLTK--AGEWYEGRPVIVTRNDAGLGVFNGDIGITLKPAAKGAPLRAYF 599 Query: 513 AMPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 DG +++SV SRL ET +AMTVHKSQGSEF H AL+LP + + V+TRELVYT +T Sbjct: 600 L--DGESVRSVAVSRLAHVETAFAMTVHKSQGSEFAHTALVLPREPSRVLTRELVYTGIT 657 Query: 572 RARRRLSLYADERI-LSAAIATRTERRSGL 600 RAR +L L+ A+A T R SGL Sbjct: 658 RARDAFTLVTGRTASLADALAHPTHRASGL 687 >UniRef50_Q15V09 DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V09_PSEA6 Length = 737 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 242/595 (40%), Positives = 339/595 (56%), Gaps = 62/595 (10%) Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 NN +SH ++ + Q + L QA + P+IL G LY+ R W E + Sbjct: 147 NNTSSHDRYSSA-QHLPAQQLSAKQLHTHQAQEHQSQSKPLILQGHELYMQRYWQYEVQL 205 Query: 120 ARFFNEVNH-----AIEVDEALLAQTL----DKLFPVSD-----------------EINW 153 A N + IE ALL Q D + D EI+W Sbjct: 206 AEKINSMTGRTSTLDIEQGRALLGQLFVSAPDDVGDERDLNDVNRQSGHGHAQREPEIDW 265 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAAR 211 QKVA +A ++ +SVI+GGPGTGKTTTV +L+A L +A G++ +I+LAAPTGKAAAR Sbjct: 266 QKVAVCLAASQSVSVITGGPGTGKTTTVIRLMALLQGLARHKGKKLQIKLAAPTGKAAAR 325 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 L++S+ A+ +LP D K +P ST+HRLLG+ P S R + +PLH+DVL+VDEA Sbjct: 326 LSQSISAAMDKLP--DALKPDLPSQCSTIHRLLGSIPNSPYFRFNQQHPLHVDVLIVDEA 383 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA----------NAGF 321 SM+DLP+MS+L ALP HA+++ LGD+DQLASVEAG+VL DIC+ A + + Sbjct: 384 SMVDLPLMSKLFAALPRHAKIVLLGDKDQLASVEAGSVLSDICSAALNFSPTVFNQSPPY 443 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 + + + L + T A + +SL LL KSYRF SGIG+LA AIN G Sbjct: 444 SDQALGVVKDLCQIELNINT-LNKAPISNSLALLHKSYRFSEKSGIGRLARAINMGRLAN 502 Query: 382 VKTVFQQD-FTDIEKRLLQSGEDYIAMLEEALAGYGRYLD-LLQARAEPDLIIQAFNEY- 438 K +F D + D+ + Q+ +D A++ L Y RY + + Q A L Q + Sbjct: 503 AKALFSDDVYQDV---VWQTSDDPKALVNRLLPDYQRYFERVRQVCARGTLSTQGIEVFA 559 Query: 439 -----QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGL 493 Q+LCA +E +GV +N IE + + I +Y GRPVM+ +ND +LGL Sbjct: 560 LLQQQQVLCAQKEASWGVKQMNVLIESELNKHGAIEL--GRDFYIGRPVMLKQNDHSLGL 617 Query: 494 FNGDIGIAL--DRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 FNGDIGIA+ + +G +VWF ++ V PSRLP H+T +AMT+HKSQGSEFDH Sbjct: 618 FNGDIGIAMPDEENEGLMKVWFVTEQNTLRGVLPSRLPPHDTVYAMTIHKSQGSEFDHVY 677 Query: 551 LILPSQRT----PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 L LP T +++REL+YT +TRA++ +LY+DE+ LS ++A R +R SGLA Sbjct: 678 LCLPRIETRSQARLLSRELLYTGLTRAKKSFNLYSDEQALSISVARRCQRGSGLA 732 >UniRef50_B5JRL2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL2_9GAMM Length = 672 Score = 355 bits (910), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 246/613 (40%), Positives = 342/613 (55%), Gaps = 66/613 (10%) Query: 49 GHVCLPLSRL-----------------ENNEASHPLLATCVSEIGELQNW---EECLLAS 88 GH+CL L RL + A H LA+ + ++G W + L AS Sbjct: 55 GHICLDLDRLFTEQGECAQRMMGETPKHTSAAPHTNLASELYQLG----WPALKAALQAS 110 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF-NEVNHAIEVDE--ALLAQTLDKLF 145 Q V ++ P++L RLYL+ W E VA+ + + +A++ + A ++ LD LF Sbjct: 111 QFVGEKNDDKPLVLDESRLYLHSQWRTEHRVAQHLASRIKNALKPPQTPATRSKILDALF 170 Query: 146 PVSDE----INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRL 201 P S NWQK+A A AL SVI+GGPGTGKTTTV K+L AL+ + I L Sbjct: 171 PSSPNSEAATNWQKIACANALRGHFSVITGGPGTGKTTTVVKVLCALLAQQSDQTLHIYL 230 Query: 202 AAPTGKAAARLTESLGKALRQLPLT--------DEQKKRIPEDASTLHRLLGAQPGSQRL 253 AAPTGKAAAR+ ES+ AL + D ++++ A T+HRLLG P S+ Sbjct: 231 AAPTGKAAARMQESMNHALESHAIDPKLFDGQLDNWREQLQVKAKTIHRLLGVIPSSREF 290 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 RH+ +PL DV++VDEASMI L M L+ ALP+ ++ LGD+DQLASVEAGAV+GD+ Sbjct: 291 RHNERHPLRCDVVIVDEASMIALDQMDSLLRALPESTHLVLLGDKDQLASVEAGAVMGDL 350 Query: 314 CAYA-NAGFTAERARQLSRLTGTHVPAGTGTEAASLR-DSLCLLQKSYRFGSDSGIGQLA 371 C A + + + A LSR++G + A R + LLQ S+RF ++SGIGQLA Sbjct: 351 CQGADDIDYQPQHAEWLSRVSGETLKASAINPQGHDRLQCITLLQHSHRFDANSGIGQLA 410 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL--AGYGRYLDLLQARAEPD 429 AIN G + + +FQ+ +DI L + L GY YL LQ + Sbjct: 411 EAINGGHQNDIDPLFQR-HSDIGLVALTQWRSLCRLGNAELDATGYAHYLQQLQQQRPAA 469 Query: 430 L------------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK----RKIHRHPH 473 +++A N +QLLCALR G +GV +N+ IE +Q++ R + P Sbjct: 470 DAAPADFDQWALTLLKARNRFQLLCALRRGEWGVEAINQAIEADLQRQHLLPRDDEQQPK 529 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGTRVWFAMPDGN--IKSVQPSRLP 528 + WYEGRP+MI +ND +GL NGD G+ L D R++ PD + ++ + PSRL Sbjct: 530 AVWYEGRPIMIQKNDYPVGLMNGDTGLVLSKPDANGDNRLYAVFPDADQGVRWIAPSRLS 589 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL-YADERILS 587 ET +AMTVHKSQGSEF+H AL+LP + +PV++RELVYTAVTRA+ + SL AD ++L Sbjct: 590 HVETAFAMTVHKSQGSEFEHTALLLPPEDSPVLSRELVYTAVTRAKAQFSLCCADTQLLK 649 Query: 588 AAIATRTERRSGL 600 T R SGL Sbjct: 650 QLSQRPTMRSSGL 662 >UniRef50_Q2SQD7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD7_HAHCH Length = 645 Score = 354 bits (908), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 259/615 (42%), Positives = 355/615 (57%), Gaps = 45/615 (7%) Query: 16 LRPLDV----QFA--LTVAGDEH-PAVTLAAALLSHDAGEGHVCLPLSR-----LENNEA 63 LRPLD QFA T A +E + L AL S+ GH CL LS+ L + A Sbjct: 16 LRPLDYYLGQQFAELATAATEEQRELLALTVALTSNALANGHTCLDLSQYAGRSLWPDSA 75 Query: 64 SHPLLATCVSEIGELQNWEECLLAS---QAVSRGDEPTPMILC--GDR--LYLNRMWCNE 116 + A L+ W E LLAS QA S + P+ C DR YL R + E Sbjct: 76 EEDMRAFIAPS---LKLWREALLASGLTQADSDIGDAGPVSPCVLDDRNCFYLARYFEYE 132 Query: 117 RTVARFFNE-VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 R +A + + H + Q L + FP + Q +AAAVA + + I GGPGT Sbjct: 133 RQLAGLLQQRIAHHAAFPPEQVRQALLRFFPSVAAEDRQAIAAAVACRQGFTAIVGGPGT 192 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTTTVAKLL L ++++ RI LAAPTGKAAARL ES+ A QL +RIP+ Sbjct: 193 GKTTTVAKLLGMLGELSEPP-LRIALAAPTGKAAARLMESIRNAKLQLGERLSHPERIPD 251 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A TLHRLL + + HHAG+PL +D+L++DE SM+DL MM R+++ALP HAR++ L Sbjct: 252 TAYTLHRLLKVRGDGKGFVHHAGHPLPVDLLLIDEVSMVDLAMMLRIVEALPPHARLMLL 311 Query: 296 GDRDQLASVEAGAVLGDICAY-ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 GD +QLASVEAG+V+GDIC+ A AG + + A L ++ G P +AA + D + Sbjct: 312 GDSEQLASVEAGSVIGDICSQRATAGVSPDMASYLRKI-GLTPPYPEEEKAAPVADCVIR 370 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ------DFTDIEKRLLQSGEDYIAML 408 L+ S+RF + SGIG+LA AIN GD A VF+Q D+ ++ LQS ++ Sbjct: 371 LEVSHRFHARSGIGRLAQAINAGDSEAALQVFRQPEFEDADWENLPPSQLQS------II 424 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI 468 ++ A Y +A + + + A N +++LCA++EG GV +N+ +E +Q+K Sbjct: 425 QQTAA--NAYEPCFKADSV-ETALDAMNRFRILCAVKEGHGGVQEINQWVEAALQRKGLA 481 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIG-IALDRGQGT-RVWFAMPDGNIKSVQPSR 526 R + Y GRPVM+ RND +LGLFNGD+G I D G R WF DG ++S+ R Sbjct: 482 PR--YQLHYHGRPVMVTRNDYSLGLFNGDVGLIWRDPASGQLRAWFPDADGPLRSIPLYR 539 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 LP HET +AMT+HKSQGSEFDH + LP PV+TREL+YT VTRA++R+S++ +L Sbjct: 540 LPAHETVYAMTIHKSQGSEFDHCVVALPETDQPVLTRELLYTGVTRAKKRISVWGPRHLL 599 Query: 587 SAAIATRTERRSGLA 601 +I T+R SGLA Sbjct: 600 IKSIKRPTQRMSGLA 614 >UniRef50_D0IXL7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Comamonas testosteroni RepID=D0IXL7_COMTE Length = 696 Score = 354 bits (908), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 265/650 (40%), Positives = 361/650 (55%), Gaps = 70/650 (10%) Query: 16 LRPLDVQFALTVAGDE---HPAVTLAAALLSHDAGEGHVCLPLSRLE---NNEASHPLLA 69 LR LD A VA + PA+ +A A+L+ G GH CLPL L N + P A Sbjct: 44 LRRLDSALAAFVAAQDAEAGPALLVATAVLAQMEGRGHSCLPLKALAGDPNQILAWPKEA 103 Query: 70 TCVSEI------GELQNWEECLLASQAV-------SRGDEPTPMIL---CGDRLYLNRMW 113 + + G L +W + L S V D P++L LYL R W Sbjct: 104 ERLQQSLWEQLPGRLADWLQALRRSPVVRVVQPGAPAADRGQPLVLLDGAAPLLYLRRYW 163 Query: 114 CNERTVARFFNE--VNHAIEVDEALLAQTLDKLFPVSDE----INWQKVAAAVALTRRIS 167 ER+VA + A+ +DE + + L +LF S ++WQK+A A+AL +S Sbjct: 164 DYERSVAAHIAQRTAADAVALDEPRVREWLGRLFSSSAAAANAVDWQKLACALALRGHMS 223 Query: 168 VISGGPGTGKTTTVAKLLAALIQMA-DGERCRIRLAAPTGKAAARLTESLGKALRQLP-- 224 VI+GGPGTGKT T A+LLA L A D + R+ LAAPTGKAAARL +S+ +L +L Sbjct: 224 VITGGPGTGKTYTAARLLALLFATAPDAAQLRVALAAPTGKAAARLKQSIDSSLLELKEA 283 Query: 225 ----LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 L E + A TLH LL A+P ++R HHAGNPL +DVL+VDEASMI L MM+ Sbjct: 284 VGRELDLEALVKRMGAARTLHSLLRARPDTRRFAHHAGNPLDVDVLIVDEASMIHLEMMA 343 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRLTGTHVPA 339 L+ ALP AR+I LGD+DQLASVEAGAVLGD+C A G + + A + R+TG +PA Sbjct: 344 ALLQALPPTARLILLGDKDQLASVEAGAVLGDLCRDAQRGNYAPDTAAYVERVTGQSLPA 403 Query: 340 G--TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK-TAVKTVFQQDFTDIEKR 396 A L +L++S RFG IG LA A+N GD +A+ + Q + Sbjct: 404 QYLAPARALPLAQHTVMLRESRRFGGP--IGLLAQAVNAGDAPSAMALLRTQTQAGLHAE 461 Query: 397 LL-QSGEDYIAMLEEALAG------YGRYLDLL---------------QARAEPDLIIQA 434 L + G + A++ A+ G Y Y ++L + R ++ A Sbjct: 462 LWAREGGEVEAVVRSAVQGRGGMASYAAYAEVLAQHGQGKGCGFATEAEHRQWVREVLAA 521 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 F+ Y+LLCA+R+G +GVAGLN +EQ +Q I + WY GRPVM+ RND+ LG+F Sbjct: 522 FDRYRLLCAVRDGSWGVAGLNRAVEQALQAMGAIRK--EGEWYMGRPVMVTRNDAQLGVF 579 Query: 495 NGDIGIALDRGQGT---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 NGDIG+AL RV+F M + V +RL ET +AMTVHKSQGSEF+H AL Sbjct: 580 NGDIGMALPSFADPARLRVYF-MQGELLHHVSTARLAHVETAFAMTVHKSQGSEFEHTAL 638 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAIATRTERRSGL 600 +L +Q V++RELVYT +TRAR+ SL+ + +L +A+ + T+R SGL Sbjct: 639 VLAAQGGNVLSRELVYTGITRARKAFSLWTEVPGLLVSAMGSPTQRSSGL 688 >UniRef50_C3X2X3 DNA helicase n=2 Tax=Oxalobacter formigenes RepID=C3X2X3_OXAFO Length = 624 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 245/576 (42%), Positives = 333/576 (57%), Gaps = 32/576 (5%) Query: 38 AAALLSHDAGEGHVCLPLSRLENN-EASHPLLATCVSEIGELQNWEECLLASQAVSRGDE 96 AA +S G+ CL L+ L + E P ++ E LLAS V+ + Sbjct: 49 AAYRVSLAVSSGNACLALAELAGSGEGVSP------------ESIRETLLASGVVAEAAD 96 Query: 97 P--TPMILCGD-RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD--EI 151 P P+IL GD RLYL+R + ER +A N +VD AL+ LD LFP Sbjct: 97 PGNAPLILDGDERLYLHRYFDYERALAECIAARNVPGKVDAALIRPLLDILFPSGKGKPF 156 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQK A A+AL ++SGGPGTGKTTTVA LLA L++ D E RI LAAPTGKAA R Sbjct: 157 DWQKAAVALALREPFLIVSGGPGTGKTTTVASLLACLLE-TDPEN-RIVLAAPTGKAAMR 214 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E++ + PL + IP++A T+HRLLG +R HA NPL LD L+VDEA Sbjct: 215 MLEAISQRSSLFPL--HMQPLIPKEARTVHRLLGMTGDRGSVRFHATNPLPLDTLIVDEA 272 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+DL M SRL ALP HARVI LGD+DQLA+VEAG+V ++ F+ L + Sbjct: 273 SMLDLAMASRLFAALPAHARVILLGDKDQLAAVEAGSVFSELS--GKRVFSEACLADLEK 330 Query: 332 LTGTHVPAGTGT---EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 LTG P + +A L + + L ++YRF DSGIG+LAA I R ++ F Sbjct: 331 LTGLRPPPSLSSPSGQATPLENRVVWLTRNYRFSEDSGIGKLAADI-RMRRSEEALDFLC 389 Query: 389 DFTDIEKRLLQSGEDYIAM-LEEALA-GYGRYLDLLQARA-EPDLIIQAFNEYQLLCALR 445 D + + +A LE L Y Y D L+ +P + +AF+ +++LCA+R Sbjct: 390 SGKDASVVWFDTADTEVASRLETTLVTAYRDYFDCLENHPHDPVRVFRAFSRFRILCAVR 449 Query: 446 EGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 EGP GV +N I + + + + + W+ GRPVMI RND AL LFNGD+GIAL Sbjct: 450 EGPCGVKAVNRLIAAHLSKTGRAGQSASADWFAGRPVMIRRNDYALRLFNGDVGIALPDA 509 Query: 506 QG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 G V+F DG +++ PSRL EHET++AMTVH+SQGSEFD AL+LP+Q + V+ RE Sbjct: 510 SGRLAVFFPKEDGTFRALSPSRLGEHETSFAMTVHQSQGSEFDSVALLLPAQFSRVLCRE 569 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 LVYT +TRAR ++++ A + +L+ ++ R SGL Sbjct: 570 LVYTGITRAREKIAVMAPKTVLAESLKNNAVRHSGL 605 >UniRef50_Q5QUQ9 ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QUQ9_IDILO Length = 647 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 243/631 (38%), Positives = 328/631 (51%), Gaps = 80/631 (12%) Query: 16 LRPLDVQFA--LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEAS-------HP 66 +R +D+ F L AG+ V LAA SH+AG GH C+ + L+N S + Sbjct: 22 IRSIDLAFVEFLQQAGETRSEVLLAALCASHEAGRGHTCIDIKALQNEPESVLNLPPENR 81 Query: 67 LLATCVSEIGELQNW----EECLLASQAVS-RGDEPTPMILCGDRLYLNRMWCNERTVAR 121 CV+ + + E L+ S V G P++L +LYL R W E + Sbjct: 82 YSPNCVNPSELFRQFGTDVEAALIQSHCVDVDGKGNQPLVLSDGKLYLRRYWQYEAFIEN 141 Query: 122 FFN-EVNHAIEVDEALLAQTLDKLFPVSD-----EINWQKVAAAVALTRRISVISGGPGT 175 ++ ++ LL TL KLF D EINWQ+VA A + R SVI+GGPGT Sbjct: 142 DLQARMSDRPVTNDDLLKSTLAKLFDKPDGDKAEEINWQRVACANTVRNRFSVITGGPGT 201 Query: 176 GKTTTVAKLLAALIQMA---DGERCRIRLAAPTGKAAARLTESLGKALRQL-------PL 225 GKT TV +LL AL R+ LAAPTGKAAARLTES+ L +L L Sbjct: 202 GKTYTVVRLLTALQHQTLFLGLPPLRVSLAAPTGKAAARLTESIESELNRLRGDAKLATL 261 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 D PE TLHRLLG +P S+ +HHA NPL DV++VDEASMID+ MM+ L+ A Sbjct: 262 KDALDAIKPE-GKTLHRLLGVKPNSRAFKHHADNPLRTDVVIVDEASMIDIEMMTALLKA 320 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRLTGTHV-PAGTGT 343 P +AR++ +GD+DQLASVEAGAVLG++C A+ G + E A+ L + T V PA Sbjct: 321 TPKNARLVLIGDKDQLASVEAGAVLGNLCEGADQGHYHTETAQWLQHVADTPVLPAELID 380 Query: 344 EAASLR-DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVK------TVFQQDFTDIEKR 396 R + +KSYRF I LA AINR D A K V +D+ + Sbjct: 381 NNGEQRLQHVVKFRKSYRF--HGPIADLANAINRQDNAATKQELEKAKVADEDYP-VSLY 437 Query: 397 LLQSGED--YIAMLEEALAGYGRYLDLLQARAEPDL-------------------IIQAF 435 + S +D + A+++ L G L R D +Q Sbjct: 438 EVSSLDDPAFEALVKRNLTTSGSL--TLHVRNNADTNSNVTKTANAEDINKLAQEALQNL 495 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 + +Q+L ALREGP+GV +N+++ + + + WYEGRPVM+ +ND L L N Sbjct: 496 SNFQILTALREGPWGVKAVNQKVGEILGVNA-------NTWYEGRPVMVTKNDYGLKLNN 548 Query: 496 GDIGIALDRGQGTRVWFAMPDGNIKS-------VQPSRLPEHETTWAMTVHKSQGSEFDH 548 GDIG+ + + A PD KS V PSRL ET +AMTVHKSQGSEF H Sbjct: 549 GDIGLTFKDPEHGHLRVAFPDQTNKSENKGVRWVLPSRLTHIETVYAMTVHKSQGSEFKH 608 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSL 579 ++LP +PV+++EL+YT +TRA+ RLSL Sbjct: 609 TVMVLPDHDSPVLSKELLYTGITRAKERLSL 639 >UniRef50_C7LVF6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF6_DESBD Length = 588 Score = 345 bits (884), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 250/597 (41%), Positives = 328/597 (54%), Gaps = 47/597 (7%) Query: 22 QFALTVAGDEHPAVTLA-AALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 +FA ++A + H + AL+S EGHVCL L +E LA L Sbjct: 26 RFAASLAREGHANLVAGLTALVSLAVREGHVCLHL----GDEGVRERLAAL-----GLDG 76 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 C L + G P+IL G+RLY +R + +E +AR F + A D + A Sbjct: 77 THACQLTGVVGAPGSG-LPLILDGERLYFSRFFRDEEALARAFMRLAGAPPRD--IPADL 133 Query: 141 LDKLFPV-SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRI 199 L +F DE +WQ VA AL R+ VISGGPGTGKTTTVA++LA +M G RI Sbjct: 134 LPDIFKTKGDETDWQDVACFAALRSRLCVISGGPGTGKTTTVARILALASRMHTGANFRI 193 Query: 200 RLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGN 259 RLAAPTGKAA+R+TE+L +A + E + + A T+HRLLG G RH GN Sbjct: 194 RLAAPTGKAASRMTEALAEAFPEGSQLPELNACLAQGAQTVHRLLGWSSGG--FRHCQGN 251 Query: 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC--AYA 317 PL LD+LVVDEASM+DL + +RL+DALPD A ++ LGDR+QLASVEAGAVL ++C Sbjct: 252 PLPLDMLVVDEASMLDLELAARLMDALPDEASLVLLGDRNQLASVEAGAVLANLCREDIV 311 Query: 318 NA---GFTAERARQLSR-LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 NA FTA A+ ++ LT T +P L D + L+KS+RFG SGI L+ Sbjct: 312 NAFSPDFTAYAAKAGAQGLTATGIP-------VPLTDHVVELKKSWRFGQHSGIAALSTL 364 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA----MLEEALAGYGRYLDLLQARAEPD 429 I G + + TD+E + A +L EA G G D P Sbjct: 365 IRDGQAQMAGELLVEGRTDLEMLPCTGQANLTATLTPLLREAFRGLGGTTD-------PT 417 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDS 489 + F +LL +R+GP G LN + +H + WY GRPVMI ND Sbjct: 418 RAFEIFGTLRLLSPVRKGPRGTEALNR------LAREALHESASNYWYPGRPVMILENDY 471 Query: 490 ALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 LGLFNGD+GIAL RV+FA +G ++S P+RLP HET +AMTVHKSQGSEF H Sbjct: 472 NLGLFNGDVGIALHVEGTLRVFFAGTEG-LESHSPARLPRHETCYAMTVHKSQGSEFGHT 530 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 LILP + PV+ REL+YTA+TRA++R +L + AI + R SGL + +S Sbjct: 531 VLILPEEPCPVLGRELLYTALTRAKKRFTLLGTAEQVKDAIESPARRDSGLGEMLTS 587 >UniRef50_P45158 Exodeoxyribonuclease V alpha chain n=19 Tax=Pasteurellaceae RepID=EX5A_HAEIN Length = 640 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 242/642 (37%), Positives = 349/642 (54%), Gaps = 65/642 (10%) Query: 14 KQLRPL---DVQFALTVAGDE------HPAVTLA---AALLSHDAGEGHVCLPLSR-LEN 60 K+LR L D FA +A + P LA AAL S +G+ C L R LE+ Sbjct: 9 KELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCSQLDRYLEH 68 Query: 61 N-------EASHPLLATCVSEIGEL--QNWEECLLASQAVSRG--DEPTPMILCGDRLYL 109 N LA +IG L ++W+ L A ++ ++ PM LY Sbjct: 69 NLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMAFQFGALYF 128 Query: 110 NRMWCNERTVARFFNEV-----NHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALT 163 R W +E + ++ A DE + Q L+K FP E +WQKVA A A+ Sbjct: 129 YRAWQDEYRIVQYIKNTLKKYRTLAFSYDE--IHQKLEKYFPEKQEKTDWQKVAVATAIK 186 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL--- 220 S+I+GGPGTGKTTTV +LL L ++ D + I+L APTGKAA+RL ES+ AL Sbjct: 187 SPFSIITGGPGTGKTTTVTRLLLVLQELFDC-KLHIKLVAPTGKAASRLEESIKNALGFM 245 Query: 221 -RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 ++ ++ IP+ ASTLH LLG + R+++ NPL LDVLVVDE SMIDLPMM Sbjct: 246 QEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSMIDLPMM 305 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 ++LI+AL R+I LGD+ QLASVEAGAVLG++ + ++ E+A L TG V Sbjct: 306 AKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATTGYKVE- 364 Query: 340 GTGTEAAS-LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 G++ ++ +RD LC L +S RF DSGIG+L+ I +G +F ++ L Sbjct: 365 --GSDCSNPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLELFDHYPQELHFNSL 422 Query: 399 QSGEDYI-AMLEEALAGYGRYL----DLLQARAEPD-----------LIIQAFNEYQLLC 442 D + +++ A+ Y +L DL + + +P+ I FN + L Sbjct: 423 NDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNSVRFLT 482 Query: 443 ALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL 502 ALR GV LN+ I +++++ + WY G+P+MI ND + L+NGDIG+ L Sbjct: 483 ALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGDIGLCL 542 Query: 503 DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 G +VWF GN + V +R+P HE + MT+HKSQGSEF H ++LP++ PV++ Sbjct: 543 ANG---KVWF----GN-REVLTNRIPAHEPAFMMTIHKSQGSEFKHTVMVLPTEVNPVLS 594 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 RELV+T VTRA++ L+++ADE+I AI +R+SGL L Sbjct: 595 RELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLL 636 >UniRef50_B1XZ26 Exodeoxyribonuclease V, alpha subunit n=4 Tax=cellular organisms RepID=B1XZ26_LEPCP Length = 739 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 260/658 (39%), Positives = 351/658 (53%), Gaps = 105/658 (15%) Query: 47 GEGHVCLPLSRL--ENNEASHPL------------------------LATCVSEIG-ELQ 79 G GH CLPL +EA+ P LA + +G + Sbjct: 87 GRGHTCLPLDEWLASVDEAAAPTAPGGSHARPLTEPWLDGPADAQAALARQLRALGTDPG 146 Query: 80 NWEECLLASQAVSRGDE------PTPMILCGDRLYLNRMWCNERTVAR-FFNEVNHAIEV 132 W LL S AV+ E +P+IL G RLYL R + +E+ VA+ A+ V Sbjct: 147 EWRAALLCSGAVAAAGEIVATGLASPLILSGSRLYLRRHFRDEQAVAQAVVGRAAAAMPV 206 Query: 133 ----------------DEALLAQTLDKLF---PVSDEINWQKVAAAVALTRRISVISGGP 173 D A + LD+LF P D +WQ+ A A+AL R+++I+GGP Sbjct: 207 AEGAPQAQPHAGTEPPDAAQVRLWLDRLFGGPPAPDRFDWQRSACAIALRGRLALITGGP 266 Query: 174 GTGKTTTVAKLLAALIQM-ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ--- 229 GTGKT TVA+LLA ++ + + RI LAAPTGKAAARL +S+ AL+QL Sbjct: 267 GTGKTYTVARLLALVMAVHPQPQALRIALAAPTGKAAARLKQSIDSALQQLAAALPGALD 326 Query: 230 ----KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 ++R+ + TLH+LLGA+P ++R A +PL +D+LVVDEASM+ L MM+ L+ A Sbjct: 327 WGLLQQRL-SQSLTLHKLLGARPDTRRFGRDARHPLEVDLLVVDEASMVHLEMMAALLAA 385 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANA-GFTAERARQLSRLTGTHVPAG-TGT 343 LP +R++ LGD+DQLASVEAGAVLGD+C A A G+ + A + G +P Sbjct: 386 LPPASRLVLLGDKDQLASVEAGAVLGDLCVDAAAGGYDEDTAAWIQACVGQALPQPFRCG 445 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF---TDIEKRLLQS 400 + L +L++S RF + IG LA A+N GD TA + + D + Sbjct: 446 QPGPLAQQTVMLRESRRF--EGPIGALALAVNAGDVTAARRLLGLGVPAPADDGSLRAPT 503 Query: 401 GEDYIAMLEEAL----------AGYGRYLDLLQARA-------EPD---LIIQAFNEYQL 440 G A+ + A+ G+ YL LL+ A PD ++QAF ++ Sbjct: 504 GVTPAAVCDLAVHGRAGNDASATGFVNYLRLLREGAPRRADGPSPDGVRAVLQAFERCRV 563 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 LCA+REG +GVAGLN IE+ ++Q+ I R WYEGRPVM+ RND ALG+FNGDIG+ Sbjct: 564 LCAVREGEWGVAGLNAAIERQLRQQGWIAR--QGEWYEGRPVMVTRNDPALGVFNGDIGL 621 Query: 501 ALDRGQGT----------RVWFAMPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 AL RVWF DG +SV SRL ET +AMTVHKSQGSEF+H Sbjct: 622 ALRGPAQPGGAQGAGGPLRVWFL--DGEQPRSVLASRLAAVETAYAMTVHKSQGSEFEHT 679 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADE-RILSAAIATRTERRSGLAALFSS 606 L+LP PV+TRELVYT +TRARR +L A E + A+ RT R SGL L ++ Sbjct: 680 VLVLPPHANPVLTRELVYTGITRARRAFTLVAPEPAVFDLALQRRTRRASGLPDLLAA 737 >UniRef50_A4B916 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B916_9GAMM Length = 583 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 226/601 (37%), Positives = 318/601 (52%), Gaps = 45/601 (7%) Query: 16 LRPLDVQFALTVAGDEHPAVTL---AAALLSHDAGEGHVCL-PLSRLENNEASHPLLATC 71 PLD A + H L AAL S +GH CL P L EA + + Sbjct: 8 FHPLDSALADRICQWHHSDDELLWHTAALTSFALQQGHTCLWPEQAL--TEAPY----ST 61 Query: 72 VSEIGEL-----QNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN-E 125 +E+G + + W L A D +P+IL +RLYL R W E +ARF Sbjct: 62 YAELGGIALPSAETWLAHLAAFDLTP--DSESPLILENERLYLRRYWQFETEIARFLKRS 119 Query: 126 VNHAIEVDEALLAQT---LDKLFPVSDE-INWQKVAAAVALTRRISVISGGPGTGKTTTV 181 A+ + EA + LD+ FP+ D NWQ+ AA L VI GGPGTGKT TV Sbjct: 120 TTGALPLTEAQVRDVRNKLDQYFPLEDNRFNWQRCAAVNCLLDPTHVIIGGPGTGKTYTV 179 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 ++LA L ++D IRLAAPTGKAA RL E++ A R+L L IP+ A TLH Sbjct: 180 TRILALLSAVSDTPPI-IRLAAPTGKAAGRLAEAINDAKRELNLDLIDAGAIPDSAQTLH 238 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 RLLG P + RHH +P+ D+L++DE SM+DLPMM+RL A+ H RVI LGD DQL Sbjct: 239 RLLGVIPNQLQFRHHQEHPIEADILLIDEVSMVDLPMMARLTRAIAPHTRVILLGDADQL 298 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV AG+VL D+ + G++ R QL+ L P T + RD + L+ S RF Sbjct: 299 PSVAAGSVLADMVDKPHTGYSQARVSQLANLD----PKQTLNSQPNARDFVTELKYSRRF 354 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK-RLLQSGEDYIAMLEEALAGYGRYLD 420 SGIGQLA ++ GD + VF Q + D++ R + +++ A + D Sbjct: 355 SDTSGIGQLAKSVIAGDASQTVRVFSQ-YEDVQWVRDIDPSRLIHQWVDQHYALIAQQED 413 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 L++A A+ ++ LCA REG G +NERI + ++R+ ++ G+ Sbjct: 414 LVKAFAQ-------LKTFRALCATREGDQGTVHINERIVSLLNRQRQT-------FFHGQ 459 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRV-WFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 P+M+ +N L LFNGDIG+ G + WF DG+ + V RLP ET +AMT+H Sbjct: 460 PIMVTQNHYGLKLFNGDIGLVWPDEHGQLLAWFEQEDGH-RPVALGRLPGVETVYAMTIH 518 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSG 599 K+QGSEF+H AL+LP + ++TREL+YT +TRA+ R +++ + + R +G Sbjct: 519 KTQGSEFNHVALVLPDREHALITRELLYTGITRAKERCDVFSPSETWNRGVDRAVTRWAG 578 Query: 600 L 600 L Sbjct: 579 L 579 >UniRef50_D1T987 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1T987_9BURK Length = 696 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 250/642 (38%), Positives = 343/642 (53%), Gaps = 101/642 (15%) Query: 43 SHDAGEGHVCLPLSRL------ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE 96 S EGHVC+PL+ L + E LLA+ ++ G L Sbjct: 67 SRATAEGHVCVPLAALARRFDASSAEVRAALLASGMASDGAADTAGAAAL---------- 116 Query: 97 PTPMIL-CGDRLYLNRMWCNERTVARFF--------NEVNHAIEVDEALLAQTLDKLF-- 145 P+++ RLYL R + ER +A + N + A L + L + F Sbjct: 117 -RPLVIDAQGRLYLARYYDYERRLAHALVAQATADGSTANVDADTAPAALRERLLRYFGP 175 Query: 146 PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM-ADGERCRIRLAAP 204 P DE++WQ+VAA +AL+ R++++SGGPGTGKTTTV +LA L+ AD RI LAAP Sbjct: 176 PRDDEVDWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDARAD---LRIALAAP 232 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TGKAA R+ E+L +LP E +R+P+ + TLHRLLG+ PG R RHH NPL D Sbjct: 233 TGKAAQRMQEALLARAGELPA--ELAERLPQTSYTLHRLLGSGPGG-RFRHHRDNPLPYD 289 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 V+V+DEASMID+ M + L+DA+ R++ LGD+DQLA+VEAGAV ++ A + Sbjct: 290 VVVIDEASMIDVAMATHLLDAIGAQTRLVMLGDKDQLAAVEAGAVFAELSARPALSASGL 349 Query: 325 R-------------ARQLSRLT--GTHVP-----------------------AGTGTEAA 346 R AR L R + G P AG T A Sbjct: 350 RRVAQALDINEARLARALPRASRQGDEAPSDDFFVPPEALQTFEADASGDLFAGVATAAG 409 Query: 347 S---------------LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 L D + L+++YRFG +S IG+L+ AI G +A V + D T Sbjct: 410 DEQPDRDARSANEHNPLADCVVWLERNYRFGLESPIGRLSVAIRNGSPSAALDVLRTDPT 469 Query: 392 DIEKRLLQSGEDYIAMLEEAL-----AGYGRYLDLLQAR-----AEPDLIIQAFNEYQLL 441 ++ L ED L E AG+ Y D L A +P + A N +++L Sbjct: 470 EVCAAALH--EDAHTTLTERTMTRLAAGFAPYADALAATLASDTPDPLPLFDALNRFRIL 527 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CA R GP GV +N I +++ + ++W+ GRPVM+ RND ALGLFNGDIGIA Sbjct: 528 CATRLGPRGVDQVNAAIAAQVRRAAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIA 587 Query: 502 LDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L G RV+F DG +++V P+ LP H+T +A+TVHKSQGSEF+HA L+LPS + V Sbjct: 588 LPGAGGALRVYFRTGDGGVRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLVLPSAFSRV 647 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 ++RELVYTA+TRAR R+ + +L+ AIAT T+R SGLAA Sbjct: 648 LSRELVYTAITRARERVEVIGARAVLAQAIATPTQRDSGLAA 689 >UniRef50_A3WKH6 ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase n=1 Tax=Idiomarina baltica OS145 RepID=A3WKH6_9GAMM Length = 633 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 231/645 (35%), Positives = 347/645 (53%), Gaps = 83/645 (12%) Query: 9 EAVEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA-- 63 E EH+ +R LD V F L +G+ + A+ A L SH AG G L L L+ + Sbjct: 15 EWFEHEWIRALDRAMVDF-LFRSGETNVAMLALAMLTSHQAGRGLTSLKLEDLKASPERC 73 Query: 64 --------SH--PLLATCVSEIGELQ-NWEECLLASQAVSRGDEPTPMILC----GDRLY 108 SH L + ++E+ + +W+ +VS + +P++L G+RLY Sbjct: 74 LALPPSGRSHDVTLPSKLLNELSVFEGDWQ------TSVSLNSDSSPLVLNKSSDGERLY 127 Query: 109 LNRMW-CNERTVARFFNEVNHAIEVDEALLAQTLDKLF-PVSDEINWQKVAAAVALTRRI 166 L R W C +++ +EV++ L TLD LF S +++WQ++A A A Sbjct: 128 LRRYWYCEHYNSQNLEMRMDNTLEVNDDQLNMTLDALFGDTSKQLDWQRMACANAARSAF 187 Query: 167 SVISGGPGTGKTTTVAKLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 SVI+GGPGTGKT TV +LL L Q A G RI+LAAPTGKAAARL+ES+ +AL +L Sbjct: 188 SVITGGPGTGKTYTVVRLLVVLQQQFQQAHGRPLRIKLAAPTGKAAARLSESINEALSEL 247 Query: 224 PLTDEQKKRIPE-----------DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 + ++PE +AST+H+LLG S+R RHH NP+ D++V+DEAS Sbjct: 248 ------QTKLPETLQPLLATIQIEASTVHKLLGVIANSRRYRHHEKNPVRADLIVIDEAS 301 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+D+ MM+ L+ A P A+++ LGD+DQLASVEAGAVLG++C A G + ++ L Sbjct: 302 MLDIEMMTALLQATPTQAQLVLLGDKDQLASVEAGAVLGNLCEGAEKG--GYWSSTINSL 359 Query: 333 TGTHVPAGT----GTEAASLR-DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 TH EA R + +L+++ RF + I +A +IN + A++ F Sbjct: 360 ASTHAQRDALIQYQDEAGPKRLQHVVMLRQTRRF--EQAIADVANSINDQNTRAIEHFFS 417 Query: 388 QDFTDIEKRLL-------QSGEDYIAMLEEALAGYGRYLDLLQARAEP------DLIIQA 434 ++ + ++ + + ++++ + Y R L+ Q R P ++ A Sbjct: 418 APVSEYDSNIVTWLMLEHDRQDSFDLLIKQGFSHYLRALE--QWREAPAEQRDTAAVLDA 475 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 + +QLL LR GP+G LN + + + RWYEGRPVM+ +ND L L Sbjct: 476 YATFQLLTGLRNGPWGAHALNRYVADVLGVEA-------DRWYEGRPVMVTKNDYGLRLN 528 Query: 495 NGDIGIALDRGQGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 NGDIG+ + R+ A D G +K V PSRL ET + MTVHKSQGSEF H L+ Sbjct: 529 NGDIGVTFRMPETGRLRVAFFDSHGKVKWVLPSRLNHVETVYVMTVHKSQGSEFAHTVLV 588 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTER 596 P +PV+T+EL+YT VTRA+++L+L ++ + A++ R R Sbjct: 589 TPQHDSPVLTKELLYTGVTRAKKKLTLVVSKKSVFLNAVSKRINR 633 >UniRef50_Q0AAH8 DNA helicase/exodeoxyribonuclease V, alpha subunit n=3 Tax=Ectothiorhodospiraceae RepID=Q0AAH8_ALHEH Length = 703 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 278/679 (40%), Positives = 364/679 (53%), Gaps = 89/679 (13%) Query: 7 LLEA-VEHKQLRPLDVQFALTVAGDEH-----PAVTLAAALLSHDAGEGHVCLPLSRLEN 60 LLEA V+ LRPLD AL V +H P + L AAL SH G GHVCL L L+ Sbjct: 24 LLEAWVDGGWLRPLD--RALAVFLHQHVPQAPPLLLLLAALTSHQVGRGHVCLELPALQA 81 Query: 61 NEASHPLLATCVSEIGE------LQNWEECLLAS-----QAVSRGDEPTPMILCGDRLYL 109 + L G LQ +E LA+ + V G +P++ RLYL Sbjct: 82 DPDGTLSLPPEGGAEGAARPSRWLQGLDEAALAAALDCPELVQDGPGSSPLVRQEQRLYL 141 Query: 110 NRMW-CNERTVARFFNEVNHAIEVDEALLAQT----LDKLFPVSD--EINWQKVAAAVAL 162 R W C R + A + + L + L++LFP +WQ++A A+A Sbjct: 142 RRYWDCEVRIGQALHRRMAAAADWQQGLDGEATRRWLERLFPAGGGAATDWQRLACALAA 201 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGER---CRIRLAAPTGKAAARLTESLGKA 219 R +VI+GGPGTGKTTTV +LL L + RIR+AAPTGKAAARL S+ A Sbjct: 202 GRGFTVITGGPGTGKTTTVLRLLVLLQALQQAAADAPLRIRMAAPTGKAAARLNASVAGA 261 Query: 220 LRQLPL---TDEQKKR--IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 L +LPL D + R IP + T+HRLLGA+P S+ RH AG PL LDVLVVDEASMI Sbjct: 262 LARLPLDGVADAEALRAAIPTEVVTVHRLLGARPDSRHFRHRAGEPLPLDVLVVDEASMI 321 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRLT 333 DL +M+ L+DALP AR+I LGD+DQLASVEAGAV+G++C A+ G +T LS ++ Sbjct: 322 DLELMASLLDALPPEARLILLGDKDQLASVEAGAVMGELCHRADGGHYTPATTAWLSEVS 381 Query: 334 GTHVPAGTGTEAA-SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 G VPA A L + +L+ S+RFG+DSGIG LA A+N GD AV+ ++ + Sbjct: 382 GESVPADYRDPAGRPLDQHIVMLRHSHRFGADSGIGALARAVNGGDAAAVEALWAAGASH 441 Query: 393 ---------------IEKRLLQSGEDYIA--MLEEALAGYGRYLDLLQ-ARAEPDL---- 430 +E + G D+ A E GY YL+ + R D Sbjct: 442 PDIARLHLAGPEDPALEALAVAGGADHFAAGASGEGPRGYRYYLEAMHDGRPRDDAPRSA 501 Query: 431 -------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 ++QA +QLL A+R GP+GV LN+RI ++ + S WY GRPV+ Sbjct: 502 WDDWARSVLQAQGAFQLLGAVRRGPWGVEALNQRIAAALRDAGLVRA--TSAWYAGRPVI 559 Query: 484 IARNDSALGLFNGDIGIALDRGQG-------------------TRVWFAMPDGN--IKSV 522 + RND LGL NGD+G+AL +G RV F DG+ I+ V Sbjct: 560 VTRNDYDLGLINGDMGVALAVPEGLAGGAPSDDAGRRDGARTVLRVAFLASDGSGRIRWV 619 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 PSRL + ET +A+TVHK+QGSEF HAAL+LP + PV+TREL+YT +TRA SL Sbjct: 620 LPSRLEQVETAYALTVHKAQGSEFRHAALVLPDRVAPVLTRELLYTGITRASDWFSLLEP 679 Query: 583 E-RILSAAIATRTERRSGL 600 +L AI RT R GL Sbjct: 680 PGGVLVRAIRQRTLRSGGL 698 >UniRef50_Q7NQR4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chromobacterium violaceum RepID=Q7NQR4_CHRVO Length = 565 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 244/558 (43%), Positives = 319/558 (57%), Gaps = 42/558 (7%) Query: 49 GHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILC-GDRL 107 GHVCLPL+ EA+ L S V R E P+IL RL Sbjct: 41 GHVCLPLA--HRGEAA-------------------ALRGSPLVGRPGEYAPLILDEAGRL 79 Query: 108 YLNRMWCNERTVARFFNEVNHAIEV-DEALLAQTLDKLFPVSD--EINWQKVAAAVALTR 164 Y R W +E + + + + DEA LA L++LFP + E + QK+AAA+A + Sbjct: 80 YFARHWHDEDRLVQGLERLAQPLPPQDEARLADWLNRLFPGAGDGEPDRQKLAAALAARQ 139 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 R+ VISGGPGTGKTTTV +LLA L M+ + +AAPTGKAAARL+ES+ A +L Sbjct: 140 RLMVISGGPGTGKTTTVVRLLALLAAMSP-RPLVMAMAAPTGKAAARLSESVRAARDRLD 198 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 D ++++P A TLHRLLG +PG + RHHA NPL LDVLVVDEASMIDL +M+R + Sbjct: 199 ADDAVRRQLPAQAETLHRLLGLRPGVEAPRHHASNPLPLDVLVVDEASMIDLSLMARTVA 258 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 ALP AR+I LGDRDQL+SVEAGAVLG++C + E ++ L R+ G V G Sbjct: 259 ALPSQARLILLGDRDQLSSVEAGAVLGELC--GRIAYRDETSQWLQRVAGA-VLQGDAAP 315 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSGED 403 +L D + LL +S+RFG+DSGIG+LA +N G+ + ++ + + D+ ++ + +D Sbjct: 316 GGALTDCVALLTRSHRFGADSGIGELARRVNAGEGQGSLHVLDDAGWPDVWRQ--DAADD 373 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 E LA YLD + A A D +AF+ + LL A R VA N RIE+ ++ Sbjct: 374 -----AELLARRRGYLDAVAAGAGADEAQRAFSAFMLLAAERR---QVADCNRRIERELE 425 Query: 464 QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQ 523 + P WY GRPVMI ND LGLFNGDIG AL R G RV F DG + Sbjct: 426 AAGV--KQPGRDWYPGRPVMIGENDYGLGLFNGDIGFALQRPSGLRVLFPSADGGWREFA 483 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 P RLP HET +AMTVHKSQGSE+D L LP Q ++ R L+YTA+TRA+ R + D Sbjct: 484 PGRLPAHETVFAMTVHKSQGSEYDEVWLQLPQQAGALLNRALLYTAITRAKLRFAAVGDA 543 Query: 584 RILSAAIATRTERRSGLA 601 R SGL Sbjct: 544 EAWLRGAELAPRRDSGLG 561 >UniRef50_Q3B471 DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B471_PELLD Length = 586 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 247/614 (40%), Positives = 334/614 (54%), Gaps = 56/614 (9%) Query: 8 LEAVEHKQLRPLDVQFALTV----AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 ++ + ++ RP+D QF + G + + A+L+S G VCL L + E Sbjct: 1 MKYIRYEDERPIDRQFGGFIMRLSTGPGKGVLRVLASLVSRALEGGDVCLDLQSVAGREI 60 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTVARF 122 + E+ EL + L S VS G P++ G LYL R E +AR Sbjct: 61 MTGEEHVSIPELPELLD---VLSRSGVVSDGGGNLPLVKGRGSLLYLQRYHVAESGLARA 117 Query: 123 FNEVNHAIEV--DEALLAQT--LDKLFPVSDEIN--WQKVAAAVALTRRISVISGGPGTG 176 +N +E D A+T L +LFP E Q+ AA AL RR SVI+GGPGTG Sbjct: 118 I--LNRCLEPQGDPEKEARTALLLQLFPAESEDGGGMQRAAALQALRRRFSVIAGGPGTG 175 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTTTV K+LA L RI +AAPTGKAA RL+ S+ L TD ++ IP++ Sbjct: 176 KTTTVVKILALLAGEDGTGGGRIAMAAPTGKAALRLSGSVRMQKAALHCTDAARRAIPDE 235 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 ASTLHRLL A PG+ R RH NPL D +VVDEASM+ LP+M AL R+I LG Sbjct: 236 ASTLHRLLQAVPGTGRFRHGPLNPLPYDTVVVDEASMVALPLMHAFFSALSPSCRLILLG 295 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQLASVEAGAVLGDICA A RL G+ +L S+ +L+ Sbjct: 296 DPDQLASVEAGAVLGDICAAA-------------RLPGS-----------ALHGSVTVLE 331 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD-IEKRLLQSGEDYIAMLEEALA-- 413 ++YRF S I LA A+N G + D + + R G + + E LA Sbjct: 332 RNYRFDGGSDISDLARAVNGGRVEESLGLLAPDRGNGVVLRPPYVGWNERDGVPEELADA 391 Query: 414 ---GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP--FGVAGLNERIEQFMQQKRKI 468 GY +L+ +P + AF+ +++L A+ +GP GV GLN EQ +++ I Sbjct: 392 IMEGYRPFLEA----GDPPSALLAFDRFRMLGAIGDGPGLSGVRGLNMAAEQVLRRAGLI 447 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ--GTRVWFAMPDGNIKSVQPSR 526 P S +Y GRPVM+ ND ++ LFNGD GI + + VWF PDG++++V P R Sbjct: 448 --DPSSPFYHGRPVMVRENDYSMRLFNGDTGIVFNDPECDAPLVWFNAPDGSLRAVAPER 505 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 LP+HET +A+T+HKSQGSEFD ++LP Q +P+++REL+YTA+TRARR + + AD L Sbjct: 506 LPKHETAYAVTIHKSQGSEFDAVLMVLPRQDSPLLSRELLYTAITRARRSVEIRADPEAL 565 Query: 587 SAAIATRTERRSGL 600 SAAI T R SGL Sbjct: 566 SAAIRKGTARVSGL 579 >UniRef50_Q12LP3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LP3_SHEDO Length = 767 Score = 321 bits (822), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 184/402 (45%), Positives = 247/402 (61%), Gaps = 36/402 (8%) Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 IPE+ASTLHRLLG P S + RH NPL LD+LVVDEASM+DLPMM +L+ ALP AR+ Sbjct: 363 IPEEASTLHRLLGVIPNSHKFRHDEHNPLRLDLLVVDEASMVDLPMMHKLLSALPKDARL 422 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAG----------FTAERARQLSRLTGTHVPAGTG 342 I LGD+DQLASVEAGAVL DICA A ++ E+A L LTG + Sbjct: 423 ILLGDQDQLASVEAGAVLADICAGLKAPASSAAQWQMRYSHEQALLLEALTGEKLTRYIH 482 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ--- 399 + A L DSLC+L S+RF D+GIG LAAA+N D A++ V+QQ ++ Q Sbjct: 483 PQ-ARLGDSLCILFHSHRFKGDAGIGLLAAAVNHADIKAIRQVWQQQHQELNWFEHQADS 541 Query: 400 -SGEDYIAMLEEALAGYGRYLDLL------------QARAEPDLIIQAFNEYQLLCALRE 446 S + A+L +++ YG YL L+ A P II +FN+Y++LCA+R Sbjct: 542 NSAQGKDALLALSVSAYGDYLSLIADNKRQFEITDASALHSPKTIIDSFNQYRILCAMRA 601 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRG 505 G FGV G+N + Q ++Q++ I P +Y GRP++IA ND LGLFNGDIG+ L D+ Sbjct: 602 GEFGVDGINAALTQALKQRKLI--DPKQEFYLGRPIIIASNDYNLGLFNGDIGLILQDKD 659 Query: 506 QGTRVW--FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP---- 559 Q TR+ F DG++ VQP+RLP H+T +AMTVHKSQGSEF + +LP + + Sbjct: 660 QPTRLMAHFIKADGSVLKVQPARLPSHDTCYAMTVHKSQGSEFAKVSFVLPPKPSTAQWQ 719 Query: 560 VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 ++T+EL+YTA+TRA+ + + + A T R SGLA Sbjct: 720 LLTKELLYTAITRAKAQFYCLGSQPVFERASRQVTLRASGLA 761 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 118/230 (51%), Gaps = 31/230 (13%) Query: 12 EHKQLRPLDVQFALTVAG----DEHPA----VTLAAALLSHDAGEGHVCLPLSRLENNEA 63 E + L PLD FAL++ D H + L ALLS H CL LS++ + Sbjct: 43 ELRLLTPLDRHFALSLCDIEGLDNHSSEAELFMLICALLSRQLSNQHSCLVLSQI---DL 99 Query: 64 SHPLLATC------VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 ++P++ C S L E L AV + + TP+IL LYLN+ E Sbjct: 100 ANPMMEECYRAPASCSINLSLTELEHQLSQFSAVGQAGDNTPLILDTGCLYLNKYHFFET 159 Query: 118 TVARFFNEVNHA--IEVDEALLA-------QTLDKLFPVSD--EINWQKVAAAVALTRRI 166 VA N + I A A Q LD LFP ++ +I+WQKVA A ALT+ + Sbjct: 160 HVAHKLNRLAQTELIATSNAFDAGTLNQVRQQLDCLFPAAENAQIDWQKVATATALTKAL 219 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 +VI+GGPGTGKTTTV KLL L + I+L APTGKAAARL+ES+ Sbjct: 220 AVITGGPGTGKTTTVTKLLLLLQTQS---AMNIKLVAPTGKAAARLSESI 266 >UniRef50_C1SHH8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH8_9BACT Length = 585 Score = 320 bits (821), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 223/600 (37%), Positives = 322/600 (53%), Gaps = 47/600 (7%) Query: 17 RPLDVQFALTVAGD-EHPAVTLAAALLSHDAGEGHVCLPLSRLE------------NNEA 63 R +D+ FA +A P L AL+ + G+ CL ++ E NN Sbjct: 15 RDIDIYFARNLADTFGAPEGALLFALVFNVTEGGNTCLNMAEPEKISFYKSFNKEINNAF 74 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 S ++A +++ L + A+S P I G +Y+ + +E +V + Sbjct: 75 SENVIAGLITK--------GALCEAPAIS-----APFIKAGSSIYMKSFYSDENSVGIYI 121 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 A + + +DK FP E N QK AA SVISGGPGTGKT+TV Sbjct: 122 KNRVSAPYIMTPETEKLIDKYFP---ENNMQKAAAINTAMNSFSVISGGPGTGKTSTVFN 178 Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 LLA L +M+ E +I + APTGKAAARLTES+ + R+ + +IPE A T+HRL Sbjct: 179 LLAVLAEMS-SEPVKIAVCAPTGKAAARLTESISEK-REEYKHEAFIDQIPEKALTIHRL 236 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 LG S+ R + N L DV+V DEASMID+ M++L +AL D R+I LGD+DQLAS Sbjct: 237 LGMAGDSRVPRFNKENKLPYDVVVADEASMIDVRNMAKLTEALSDDCRLILLGDKDQLAS 296 Query: 304 VEAGAVLGDICAYANAG-FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 V+ GAV+GDIC+ A F+ +RA LS+ T + AG A D +L KSYR+ Sbjct: 297 VQPGAVMGDICSAAPVDEFSTDRAEILSKYTTGTIKAGKSPYA----DVTIMLDKSYRYD 352 Query: 363 SDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG-RYLD 420 S++GIG LAAA RGD KTA++ + +E L + E A GY R+ + Sbjct: 353 SNAGIGLLAAAAGRGDHKTALEVLLNDTTKKVEFLELDNN------FETAAGGYVLRHFE 406 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 + +L I+AFN++++L R+ G A +N +Q + R H +Y G Sbjct: 407 SYSREQDQNLAIEAFNKFRILTPHRQMNGGTAHINTIAQQTLF--RAGHTDNTKHFYHGM 464 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 PVM+ ND +L +FNG+ G+ L + + FA I+ + P+RLP H ++MTVHK Sbjct: 465 PVMVVENDYSLNIFNGETGLILGNSE-LKSCFAHDKDKIRHITPARLPAHVPAYSMTVHK 523 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFDH ILP + ++TREL YTAVTRA+ +L++ + + + ++ + ER SGL Sbjct: 524 SQGSEFDHVLFILPDSDSAILTRELFYTAVTRAKTKLTVISTKDAVRKCLSAKIERSSGL 583 >UniRef50_A6DNF1 Exonuclease V (RecBCD complex), alpha chain n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF1_9BACT Length = 601 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 221/580 (38%), Positives = 325/580 (56%), Gaps = 43/580 (7%) Query: 41 LLSHDAGEGHVCLPLSRL---ENNEASHPLLATCVSEIGELQNWEECL-LASQAVSRGDE 96 +LS+ A + H LPL + NE H VS + + E+ L + Q + +GDE Sbjct: 40 VLSYYANQQHSVLPLRDILIEYRNEDGH-----IVSHNIDFELDEQALKIYRQVMGQGDE 94 Query: 97 PTPMI--LCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP--VSDEIN 152 P+I L +YLN+ + E TVARF +++ + + L Q L+++FP ++ +IN Sbjct: 95 TKPLIVDLENQLIYLNKYYRAEATVARFISKLADQTQELDGQLTQKLNEVFPNQIAGKIN 154 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 WQKVAA +AL R VISGGPGTGKTTTV K+LA L++ RI L APTGKAA RL Sbjct: 155 WQKVAAFMALRSRFCVISGGPGTGKTTTVGKILALLLEQNPA--TRIDLLAPTGKAADRL 212 Query: 213 TESLGKALRQLPLTDEQK------KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVL 266 ES+ + +DE+ +IP A T+HR LG PG +HH D+L Sbjct: 213 GESIRNFISSQ--SDEKAFSAATLAKIPVQAQTIHRYLGFAPGGG-FKHHDKFKTPSDIL 269 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAER 325 ++DE+SM+ L + +I AL H RVI LGD+DQLA+VE G VLGD+ A F+ Sbjct: 270 LIDESSMVPLTLFRSVIQALQSHCRVILLGDKDQLAAVETGNVLGDLTAGGQINSFSPTF 329 Query: 326 ARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD--KTAVK 383 A++L L+ + + SL+D + L+ S+RF S SGIGQLA +N Sbjct: 330 AKELKELS-SELILNEDQSMGSLQDIMVKLEHSFRFDSSSGIGQLARDVNEQPVPHPLED 388 Query: 384 TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR--YLDLLQARAEPDLIIQAFNEYQLL 441 T + + + DI + L A EE +G R + + ++ P+ ++A N++++L Sbjct: 389 TQYFKAYDDIAHQALP------AKAEELFSGAIRQCFTEYKKSLRSPEEALKALNKFRIL 442 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CA R G FG + LN+ I Q I Y+GR +MI RND + L+NGDIGI Sbjct: 443 CASRNGSFGASKLNQHISQI------IFSQSDESLYKGRAIMITRNDYNIKLYNGDIGII 496 Query: 502 LDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L G + WF PD +++S PS LP++++ +AMT+HKSQGSE+ + LILP Q + Sbjct: 497 LPDDSGLPKAWFPGPDNSLRSFPPSMLPDYQSAFAMTIHKSQGSEYQNVHLILPDQADRL 556 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 +++EL+YT +TRA+ + +YA + L + +T+R SGL Sbjct: 557 LSKELIYTGITRAKSAIVIYASRKTLLSTCKRQTDRLSGL 596 >UniRef50_A4SEL8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEL8_PROVI Length = 570 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 227/586 (38%), Positives = 310/586 (52%), Gaps = 78/586 (13%) Query: 37 LAAALLSHDAGEGHVCLPLSRL-------ENNEASHPLLATCVSEIGELQNWEECLLASQ 89 LA ++ + A G VC L+ + + N + P +++ L S Sbjct: 34 LAVSMAARSAASGDVCFDLASIHETMVEYQGNRIAMP----------SMRDLRSLLYDSG 83 Query: 90 AVSRGDEPTPMILC-GDRLYLNRMWCNERTVA-RFFNEVNHAIEVDEALLAQTLDKLFPV 147 A P++L RLYL R W E +A R H E + L L + Sbjct: 84 AAVAPGATGPLVLDEKGRLYLYRYWKLEHDLAARLLKMAGH--RAPETAASDALSSLRTM 141 Query: 148 SD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 + Q+ A ALT ++++I+GGPGTGKT TV ++L+ L Q G + RI L APT Sbjct: 142 GELEAGGMQERAVIAALTGKLTIIAGGPGTGKTATVGRILSILRQQEGGRKKRIALCAPT 201 Query: 206 GKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDV 265 GKAAARL SL KA+ + E ST+HRLLG GS R RH+A NPL LD+ Sbjct: 202 GKAAARLQSSL-KAM-----SGEAGA-----VSTIHRLLGTIQGSTRFRHNARNPLPLDI 250 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAER 325 LVVDE SMI LP+M+ L+ A+ A +I LGD+ QLASVE+GAVLGDIC+ A Sbjct: 251 LVVDEVSMIALPLMAALVSAMRPEASLILLGDQYQLASVESGAVLGDICSAA-------- 302 Query: 326 ARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 AR+ P G S+ L KSYRF +S +G+L+ A+N G+ + + Sbjct: 303 ARE------PDSPIGA---------SVITLDKSYRFSGESALGRLSMAVNAGNAASALAL 347 Query: 386 FQQDFTDIEKRLLQSGEDYIAMLEE----ALAGYGRYLDLLQARAE-PDLIIQAFNEYQL 440 L +GE +A EE + GY YL+ AE P ++ F +++ Sbjct: 348 LMDISVSGISLLPVTGE--MAFREELKECIVEGYRPYLE-----AETPAGALRHFEGFRI 400 Query: 441 LCALREGP--FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 L ALREGP GV LN +E+ + Q I P +Y GRPVM++ ND +L LFNGD Sbjct: 401 LAALREGPGVTGVMKLNRMVEEILLQAGLI--DPVEDFYPGRPVMLSANDYSLNLFNGDT 458 Query: 499 GI----ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 GI AL G+ RV F DG+++++ P RLP HET +AMT+HKSQGSEFDH +ILP Sbjct: 459 GIVVEDALHPGR-MRVAFMTADGSLRTIAPERLPSHETAYAMTIHKSQGSEFDHVLMILP 517 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 +P++TREL+YT +TRAR L + + + A+ T R SGL Sbjct: 518 EAGSPLLTRELLYTGITRARALLEVRGEASVFEEAVKKTTIRLSGL 563 >UniRef50_B2JKV2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Burkholderia RepID=B2JKV2_BURP8 Length = 672 Score = 314 bits (804), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 245/628 (39%), Positives = 336/628 (53%), Gaps = 102/628 (16%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT----PMILC 103 EGHVC L L + E+ + LLAS S G +P P+++ Sbjct: 63 EGHVCTSLDELAQRYEA------------EVAHVRCALLASGVASDGMQPAYALRPLVVD 110 Query: 104 GD-RLYLNRMWCNERTVARFFNEVNHA-IEVDEAL--------LAQTLDKLF--PVSDEI 151 G RLYL R + ER +A+ + V+HA +E ++ + L + L + F P ++I Sbjct: 111 GQGRLYLARYYDYERRLAQ--SLVDHARVEHEDGVSGEMSPHALRERLLRYFGPPQDEQI 168 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ+VAA +AL+ R++++SGGPGTGKTTTV +LA L+ R+ LAAPTGKAA R Sbjct: 169 DWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDARPA--LRVALAAPTGKAAQR 226 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E+L LP E R+P + TLHRLLG P R RHH NPL DV+V+DEA Sbjct: 227 MQEALLARAGSLP--PELAARLPHTSFTLHRLLGTGPDG-RFRHHRENPLPYDVIVIDEA 283 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SMID+ M + L DAL ++ LGD+DQLA+VEAGAV G++ A FTA+ ++ Sbjct: 284 SMIDVAMATHLFDALARDTHLVMLGDKDQLAAVEAGAVFGELSA--QPAFTAQGVGSIAA 341 Query: 332 LTGT-------HVPA------------------------GTGTEA-----ASLRDSLCLL 355 G +PA G +EA A L D + L Sbjct: 342 ALGIGERSLRDALPATAICHDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVWL 401 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG---EDYIAMLEE-- 410 +++YRFG +S IG+L+ AI RG A + D DI+ + + ED A E Sbjct: 402 ERNYRFGLESAIGRLSLAIRRG---AAQEAL--DVMDIDPAVPCAAAFHEDMDAAPSEHT 456 Query: 411 ------------ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 + A + + A N +++LCA R G GV +N + Sbjct: 457 IHRLAAGFAAYADALTAALFSTSANAASHAPALFDALNRFRILCATRLGARGVDHMNAAM 516 Query: 459 EQFMQQKRKIHRHP---HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAM 514 Q R+ R P ++W+ GRP+M+ RND ALGLFNGDIGIAL G RV+F Sbjct: 517 AA---QVRRAARMPLAIGAQWFAGRPIMVTRNDYALGLFNGDIGIALPGADGALRVFFRG 573 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 DG +++V P+ LP H+T +A+TVHKSQGSEFDHA L+LPS + V++RELVYTAVTRAR Sbjct: 574 ADGALRAVSPAALPPHDTAFALTVHKSQGSEFDHAVLMLPSTFSRVLSRELVYTAVTRAR 633 Query: 575 RRLSLYADERILSAAIATRTERRSGLAA 602 R+ + +L AIAT T+R SGLAA Sbjct: 634 ERVEVVGSRAVLMRAIATPTQRDSGLAA 661 >UniRef50_C5SAK6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAK6_CHRVI Length = 740 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 274/725 (37%), Positives = 360/725 (49%), Gaps = 129/725 (17%) Query: 11 VEHKQLRPLDV---QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEAS--- 64 E LR LD+ +F + PAV LA AL S G GHVCL L+ N S Sbjct: 14 TEAGALRRLDLALTRFIRDQTPETDPAVLLAIALTSERNGHGHVCLDLAGALNRPYSVLT 73 Query: 65 --------HPLLAT---CVSEIGELQNWEECLLASQAVSR-------------------- 93 P +T + L +W L S A+ Sbjct: 74 HRSDWLTPPPGPSTELAALLAPLTLDDWVARLARSGAIEDRLGLASDPGLPARPAADTDA 133 Query: 94 --GDEPTPMILCG----DRLYLNRMWCNERTV-ARFFNEVNHAIEVDEALLAQTLDKLF- 145 E P+IL G LYL R W E+ + + + + E LD LF Sbjct: 134 RPNHEHPPLILDGAPERPLLYLRRYWTYEQRIRTGIAARLCRPVPLPEDATRDLLDLLFA 193 Query: 146 ------PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA---DGER 196 P +D + WQ++A A+A R +VI+GGPGTGKTTTV +LLA L +A G Sbjct: 194 GDGSGTPGTDTLPWQRIACALAARRAFAVITGGPGTGKTTTVVRLLALLQGLALTAGGPP 253 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR-----IPEDASTLHRLLGAQPGSQ 251 RIRLAAPTGKAAARL S+ + QLP R IP +A TLHRLLG +P S+ Sbjct: 254 LRIRLAAPTGKAAARLNASIAAQVDQLPFDRLPGGRAMRAAIPTEAGTLHRLLGPRPDSR 313 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 R+ A PL D++VVDEASMID+ +MS L+ AL AR+I LGD+DQLASVEAGAVLG Sbjct: 314 HFRYGADRPLPADIVVVDEASMIDVELMSALLAALRPDARLIVLGDKDQLASVEAGAVLG 373 Query: 312 DICAYA-NAGFTAERARQLSRLTGTHVPAG-TGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 D+C A A +T L R+TG +P L ++ +L+ SYRF ++ GIG Sbjct: 374 DLCRRARQAHYTPPTRDWLQRVTGARLPDDLIDPSGRPLDQAIAMLRHSYRFRAEGGIGA 433 Query: 370 LAAAINRG---------DKTAVKTVFQQDF-----TDIE----KRLLQSGEDYIAMLEEA 411 LA +N G A+ +F++ TD +RL +GE + Sbjct: 434 LAELVNAGVLDGRPVRDPLAALDRLFERQSDPSLQTDPGLGHLRRLRLTGEPDTQLDHLV 493 Query: 412 LAGYGRYLD-------------------------LLQAR----AEPD-------LIIQAF 435 AGY LD L + R A PD ++QA Sbjct: 494 RAGYWHGLDSTGDSGSRTSHGAAGLDPVPGYLAVLHRERPGDDAGPDAFDDWARAVLQAQ 553 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQ--KRKIHRHPHSRWYEGRPVMIARNDSALGL 493 +QLL LR+GP+GV GLN RI+ + Q + + +W+EGRPV++ RND ALGL Sbjct: 554 AGFQLLTPLRQGPWGVEGLNRRIQHLLSQGAQAPLTGAGERQWFEGRPVLVTRNDYALGL 613 Query: 494 FNGDIGIAL---DRGQGT------RVWFAMPDGN--IKSVQPSRLPEHETTWAMTVHKSQ 542 NGDIG+ L R G+ RV F DG+ I+ + PSRL ET +AMTVHKSQ Sbjct: 614 MNGDIGLTLRVPSRRDGSAGRLVLRVAFPAGDGSGAIRWILPSRLQAVETVFAMTVHKSQ 673 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS-LYADERILSAAIATRTERRSGLA 601 GSEF+H AL+LP PV+TREL+YTA+TR++ + LY+ E ++ A+ R ER SGLA Sbjct: 674 GSEFNHTALVLPEASNPVLTRELIYTAITRSKSSFTLLYSRESVIREALGRRVERVSGLA 733 Query: 602 ALFSS 606 S Sbjct: 734 MALES 738 >UniRef50_Q480P0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480P0_COLP3 Length = 769 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 208/615 (33%), Positives = 308/615 (50%), Gaps = 117/615 (19%) Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVNHA-----IEVDEALLAQTLDKLFPV------- 147 ++L D+LYL R + E + E HA + D + Q + KLFP Sbjct: 159 LVLQHDKLYLRRYFQFESDLG----EAIHARLLQQCQYDNDSIGQCIGKLFPNDLAQVEA 214 Query: 148 ----SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI---QMADGERCR-- 198 S EI+WQKVA A A+ + SVI+GGPGTGKT TV KLLAAL+ QM + + Sbjct: 215 QDVESLEIDWQKVAVANAINKNFSVIAGGPGTGKTYTVTKLLAALVMLEQMGLAKTGKQQ 274 Query: 199 ---------------IRLAAPTGKAAARLTESLGKALRQLP--LTDEQKKRIPEDASTLH 241 I L APTGKAA RL+ES+ A+ + D+ IP A TLH Sbjct: 275 AEVAQQKQQGTAVLNIALVAPTGKAAQRLSESIVNAISGFKNLIDDKVLAEIPTQAQTLH 334 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 RLLG P S RHH N L D++++DE SM+DLP+M+R+ AL D A+VI LGD DQL Sbjct: 335 RLLGVLPNSPNFRHHQDNRLPYDIVLIDEVSMVDLPLMTRVFRALKDTAKVILLGDADQL 394 Query: 302 ASVEAGAVLGDICAYANAGFTAERAR-----------QLSRLTGTHVPAGTGTEAASLRD 350 SV AG+VL DI + GF+ E + Q+S H E +S D Sbjct: 395 PSVAAGSVLADIAPRPHGGFSLENEQYLAQVCQLLPAQVSDYFSAHRLPSQSAEQSSF-D 453 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGD--------KTAVKTVFQQDFTDIEKRLLQSG- 401 L L KS RF GIG +A ++ +GD ++ Q+ F I+ LQ+G Sbjct: 454 YLTFLVKSRRFDGKGGIGLIANSVIKGDVKRSWRLLNDSLSQSTQEGF--IQGDYLQAGY 511 Query: 402 -------EDYIAMLEEALAGYGRYL-DLLQARAEP----DLIIQAF---NEYQLLCALRE 446 + + L A +L L++ +P + AF +++++LCA R+ Sbjct: 512 LQGDKSQKQQPSQLTLAQGDLTTWLAPLVKQYYQPIEHCSTVSDAFVLLSQFRVLCATRQ 571 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI---ALD 503 G +GV LNE I+ ++ + ++ Y G+P+MI ND LGL+NGDIGI +D Sbjct: 572 GDYGVERLNEVIKSYLGKNNAPYQQHQQTLYHGQPIMINENDYRLGLYNGDIGIIWKVID 631 Query: 504 RGQGTRVWFAMPDGNIKS--------------------VQPSRLPEHETTWAMTVHKSQG 543 + T + D ++S + PSRLP+ E+ +AMT+HK+QG Sbjct: 632 QAGKTHLMACFEDTTLESKSAESKVDESTETSQLTIRQILPSRLPQFESVYAMTIHKTQG 691 Query: 544 SEFDHAALILPSQRTP--------------VVTRELVYTAVTRARRRLSLYADERILSAA 589 SEF H A+++ + ++ +++REL+YT +TRA+++L++ A++R+ Sbjct: 692 SEFSHVAMVISATQSEQQTLQQGKQQGGSRLLSRELLYTGITRAKKQLTIAANQRVWQQG 751 Query: 590 IATRTERRSGLAALF 604 + + +R SGL F Sbjct: 752 VTAQVKRHSGLYLDF 766 >UniRef50_B0UUC7 Exodeoxyribonuclease V, alpha subunit n=9 Tax=cellular organisms RepID=B0UUC7_HAES2 Length = 674 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 223/648 (34%), Positives = 339/648 (52%), Gaps = 77/648 (11%) Query: 20 DVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE------ASHPLLATCVS 73 D Q L + L AAL + +GH CL + A L Sbjct: 27 DKQRELDYSSQVKNLAILLAALCNFHNQQGHTCLKIENFSFRNLFNLPYAEKSYLIDIKE 86 Query: 74 EIGEL--QNWEECLLASQAVSRG--DEPTPMILCGDRLYLNRMWCNERTVARFF-----N 124 +IG + W+ L+ A ++ +E P++L +RLY R W +E +A F Sbjct: 87 KIGNITQSEWQNLLINHIAFTQDPINEVKPLVLQNNRLYFYRTWQDEHRIAEFLIRTIKQ 146 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDE-------INWQKVAAAVALTRRISVISGGPGTGK 177 + N +++ + L K FPV E NWQK+A A A+ + +I+GGPGTGK Sbjct: 147 KENQPYPIEK--IQGILQKYFPVEHEDNSLKQKHNWQKIAVATAIHQPFCMITGGPGTGK 204 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL------PLTDEQKK 231 TTTV +LL AL ++A+G + IRL APTGKA+ RL S+ + L +++ K Sbjct: 205 TTTVTRLLLALQELAEG-KLVIRLVAPTGKASERLKISMKNSFNLLTKKELIKVSEHIKN 263 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 IP +A T+H L+G + ++ +++ NPL +D+LVVDEASM+DL +M++L+ AL + Sbjct: 264 AIPFNAETIHSLIGVRFFEEKTKYNKRNPLPIDLLVVDEASMVDLFLMAKLLQALKPSCK 323 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 +I LGD+DQL+SVEAGA+L ++ + +++ A L + TG ++ + +RD Sbjct: 324 LILLGDKDQLSSVEAGAILAELGTFRQYSISSKLADYLQQTTGENLEH--HADENLIRDC 381 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINR----------------------GDKTAVKTVFQQD 389 LC L+ S RFG IG+LA IN+ G+ V Q + Sbjct: 382 LCNLEGSRRFGKHPYIGKLAQLINQQKIAESWQLFHQYQQENNTNDTGEINLVDYSTQYE 441 Query: 390 FTDI-EKRLLQSGEDYIAML--EEALAGYGRYLDLLQARAEPDL--------IIQAFNEY 438 T+I E+ L Y + L + A+ Y YL L+ E +L I AFN+ Sbjct: 442 QTNIDEQPLAHHYSQYCSQLVVQSAVQNYEEYLQLIHKITENNLPIKLHIAAIFAAFNKV 501 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR-WYEGRPVMIARNDSALGLFNGD 497 + L ALR G G LN+ I + +++K + + HSR +Y G+P++I N+S LGL NGD Sbjct: 502 RFLTALRVGELGSENLNQLIAEQLKKKGLV-QFNHSRDFYIGKPIIITENNSRLGLANGD 560 Query: 498 IGIALDRGQ-----GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 I + L Q WF N K+ SR+PEH + MT+HKSQGSEF H ++ Sbjct: 561 IALYLAEKQPDGSLKGHFWFE----NGKAELASRIPEHSPAFTMTIHKSQGSEFSHTFVV 616 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 LP + PV+ +ELVYT VTRA ++++++D +I + A++ TER+SGL Sbjct: 617 LPCEANPVLCKELVYTGVTRAINQVTIFSDRKIWNMAVSKATERQSGL 664 >UniRef50_Q1NL94 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Deltaproteobacteria RepID=Q1NL94_9DELT Length = 645 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 198/525 (37%), Positives = 285/525 (54%), Gaps = 42/525 (8%) Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNE------VNHAIEVDEALLAQTLDKLFPVS--D 149 TP++L LYL R W E +A F + V + A+ L L S + Sbjct: 141 TPLVLADKLLYLRRYWQYESDLAAFIRQRAAPQGVTATPQAPPGQPAEQLAALAAGSGVE 200 Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 Q+ A A +R+++VISGGPGTGKTT + +LA L Q R+ L APTGKAA Sbjct: 201 LAAEQQRAVLAACSRQLTVISGGPGTGKTTIIFFILA-LSQRLATTPPRVLLLAPTGKAA 259 Query: 210 ARLTESL-GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL-RHHAGNPLHLDVLV 267 ARL +++ K +PE+A T+HR LG QP S + R A NPL D++V Sbjct: 260 ARLGQAVREKKEELAATAAVALAELPEEAMTIHRALGYQPASPTIFRRRADNPLAADLVV 319 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 VDEASM+D+ ++S+L A+P AR++ LGD+DQLASVEAG++LGDICA A+ Sbjct: 320 VDEASMVDIALLSKLFAAVPATARLVLLGDQDQLASVEAGSILGDICAAAS--------- 370 Query: 328 QLSRLTGTHVPAGTGT----EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVK 383 + P G T + SL + L++ +RF GIG L A+ G A Sbjct: 371 -----SPESEPPGATTAPLAQQGSLAAGVVTLRRGFRFDPGRGIGALVDAVRAGQPEAAL 425 Query: 384 TVFQQDFTD--IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 V D + + + L + G D A + ++G+ L P + +++LL Sbjct: 426 QVLANDQSGEVVCQPLAEPGADP-AFAQLLISGFRAALTA----TSPAQALAHLADFRLL 480 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 A R G GV LN + Q + WY G+P++I ND L LFNGD+G+ Sbjct: 481 AAHRRGAAGVEELNRCCRHILHQA-GLLPAAAGPWYRGQPLLITANDYNLRLFNGDLGVI 539 Query: 502 L----DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 D G+ R +F+ +G ++S+ PSRLP HET +AMT+HKSQGSEF+ A++LP + Sbjct: 540 WESTEDDGE-LRAFFSSAEGRLRSLSPSRLPAHETAFAMTIHKSQGSEFEQVAVVLPGEA 598 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 +P++TREL+YTA++RARR++ L+A +++ AI R R SGLAA Sbjct: 599 SPLLTRELLYTAISRARRKVLLFATPAVIAEAIGQRVRRTSGLAA 643 >UniRef50_C6NU54 Exodeoxyribonuclease V alpha chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU54_9GAMM Length = 654 Score = 292 bits (748), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 226/630 (35%), Positives = 330/630 (52%), Gaps = 84/630 (13%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCL--------PLSRLENNEASHPLLATCVSEIGE-LQN 80 D P + AA+ H G GH L PL L+ E + L ++ +G + Sbjct: 41 DIAPELLFLAAITVHLEGLGHTSLDVPAFLAQPLYYLDWPEQAGEALEEFLAAMGSGPEA 100 Query: 81 WEECLL-------------ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 W+ L+ RG E TP++ G RLYL R + +E + R ++ Sbjct: 101 WQAALIRGGRMLAQYHDRTPPNISQRGPE-TPLVWDGRRLYLRRHFRDEWEIDR---QLQ 156 Query: 128 HAIEVDEALLAQ---TLDKLF-PVSDEI--NWQKVAAAVALTRRISVISGGPGTGKTTTV 181 + A ++ TL +LF P S + Q++A A+A R ++I+GGPG+GKT T+ Sbjct: 157 SRVGTTVAYFSEGSATLTRLFGPASSSSAGDGQRLACALAAERGFTLITGGPGSGKTYTI 216 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL------PLTDEQKKRIPE 235 A+LL L+Q A R+ LAAPTGKAA R+ +L +++ L D ++ P Sbjct: 217 ARLLVLLMQAAP---RRVALAAPTGKAALRMDTALRQSVDDFVRRGDDDLADLLRQVPP- 272 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A TLHRLLGA+PG++RLRH A PL+ D+LVVDEASMI +M+ L+ A P +++I L Sbjct: 273 -AQTLHRLLGARPGTRRLRHDAHRPLNFDLLVVDEASMIQHDLMAALLRATPARSQLILL 331 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT-GTEAASLRDSLCL 354 GD DQLASVEAGAVL +IC A ++ A L R G + A + +A++L +++ Sbjct: 332 GDPDQLASVEAGAVLAEIC-RGRAVYSPATAEDLKRRWGIALAADSLRDDASALEEAVVR 390 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF---------------------QQDFTDI 393 L SYRF D I +LA AI GD V + + +F ++ Sbjct: 391 LSSSYRF--DGPIAKLATAIRSGDAECVIDLLAASTTVEGSALGWIDPRAGAGRANFLEL 448 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 +R +S + A LE+ +G + ++ ++ A + +++LCALREGP+GVAG Sbjct: 449 AERTWRSTQ---ARLEQVPSGETEHATWVRE------LLAAADTFRILCALREGPWGVAG 499 Query: 454 LNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWF 512 +N Q Q R WY GRPV++ RND G++NGD+G+ L QG +V+F Sbjct: 500 IN---AQMAAQLRPPGY--SGDWYPGRPVLVQRNDPIAGVYNGDLGLVLPDTQGRLQVYF 554 Query: 513 AM-PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 P + P RL + + +A+TVHK+QGSEF LILP + +PV++REL+YTAVT Sbjct: 555 PRGPQLAPLRLHPQRLGDATSAYALTVHKAQGSEFQRVLLILPPEDSPVLSRELLYTAVT 614 Query: 572 RARRRLSLYADERILSAAIATRTERRSGLA 601 RARR LS + R SGLA Sbjct: 615 RARREFIAVTPLETLSRILGRHGRRMSGLA 644 >UniRef50_A1KCB0 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease n=4 Tax=Proteobacteria RepID=A1KCB0_AZOSB Length = 650 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 227/537 (42%), Positives = 312/537 (58%), Gaps = 49/537 (9%) Query: 99 PMIL-CGDRLYLNRMWCNERTVA---RFFNEVNHAIEVDEALLAQTLDKLFPV--SDEIN 152 P++L DRLYL R++ E +A R E DE + A L LFP + + Sbjct: 121 PLVLDADDRLYLRRLYDLEGRLAQALRTRAEAAPGAVADERVRA-LLAPLFPAPAGEAPD 179 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 WQ++A A+AL RR++VISGGPGTGKTTTVA LL AL+ + + RI LAAPTGKAAAR+ Sbjct: 180 WQRIAVALALGRRLTVISGGPGTGKTTTVAALLGALLGLQ--PQARIALAAPTGKAAARM 237 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 E+L LP + +P +A T+HRLLG P R RHHAGNPL +DVLVVDEAS Sbjct: 238 LEALRGRAASLPAA--LRAALPGEAHTVHRLLGVTPQPGRFRHHAGNPLPVDVLVVDEAS 295 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DL + +RL+DALP AR++ LGD+DQLA+VEAGAV ++ A AR L Sbjct: 296 MLDLALAARLLDALPPEARLVLLGDKDQLAAVEAGAVFAEVSA----------ARALDAA 345 Query: 333 TGTHVPAGTGTEAASLRD--------------SLCLLQKSYRFGSDSGIGQLAAAINRGD 378 + A TG AA++ D S+ L +S+RF +DSGIG+LAA IN G Sbjct: 346 EVARLAALTGCSAAAMADELGPPAGAAGALAGSVVWLTRSHRFAADSGIGRLAADIN-GG 404 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGE--DYIAMLEEALAGYGRYLDLLQ---ARAEPD---- 429 + + D R L GE A+ + GY YL L+ A+A P Sbjct: 405 RGETALAWLAAGADPSARWLDDGEARPGAALWQAMETGYAPYLAALRESAAQATPPARAV 464 Query: 430 -LIIQAFNEYQLLCALREGPFGVAGLNERIEQFM--QQKRKIHRHPHSRWYEGRPVMIAR 486 AF+ +++L A+ +GP G+ LN + +++ Q + R +RWY GR V++ R Sbjct: 465 ATAFAAFDRFRVLAAVHDGPRGLGALNAHLARWLRAQLAHPLDRGAGARWYPGRAVIVLR 524 Query: 487 NDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 ND LGL+NGD+G+ L GT VWFA+ G +++ P RLP H+ +A+T+HKSQGSE Sbjct: 525 NDYLLGLYNGDVGLCLPDADGTLAVWFALQGGGFRALPPQRLPAHDDAFALTIHKSQGSE 584 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 F+ ++LP+Q V++REL+YT VTRA +R+ + + +AA T R SGLAA Sbjct: 585 FEEVLVVLPAQPVRVLSRELLYTGVTRAAQRVCVAGGAAVFAAACERPTRRHSGLAA 641 >UniRef50_C7PDT2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT2_CHIPD Length = 601 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 214/615 (34%), Positives = 326/615 (53%), Gaps = 77/615 (12%) Query: 33 PAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVS 92 PA+ A LLS EGH+CL L++ EA+ L A C + + ++ L ++ Sbjct: 18 PALKPYAYLLSRKLSEGHICLHLNK--PVEAAADLPAFCENMPTGSRTLQQIPLVAKG-- 73 Query: 93 RGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL----------D 142 G++ P +L +RLYL R + E F ++ + ++ +LA L Sbjct: 74 -GNDSQPFVLYQERLYLQRYFRYETI---FLQRIHQFLATEKEVLADRLKMLETHRTFIS 129 Query: 143 KLFPVS--------DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 LF D +WQ AA + ++I+GGPGTGKTTTVAK+LA L + Sbjct: 130 NLFAAGPAFVADGGDPADWQLSAAVTGVLNNFTIITGGPGTGKTTTVAKILAILYYL--D 187 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA-STLHRLLGAQPGSQRL 253 ++ LAAPTGKAAAR+ ESL QLP+ D + A ST+HRLL ++ S Sbjct: 188 PSLKVALAAPTGKAAARMAESLRNT--QLPVDDAITAQFRSLAPSTIHRLLRSRKDSPYF 245 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 ++ NPL+ DV+++DE SMID+ + ++L+DA+ + R+I LGD+DQLASVEAG++ GD+ Sbjct: 246 VYNRENPLNYDVVILDECSMIDVALFAKLLDAVGNGTRLILLGDKDQLASVEAGSLFGDL 305 Query: 314 CAYANA--GFTAERARQLS--------RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 C +A FT ER ++ +L + + A + L L L++S+RF Sbjct: 306 CQAQDALNMFTKERLALINSFIPDERRKLPDSQIKA---NDPHPLFQHLVELRRSHRFSG 362 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA---------LAG 414 D GIG+ + AI D+ A+ L G D +++E +AG Sbjct: 363 DKGIGKFSKAIIANDQVAIHG------------FLAPGADEQVVIDETYSKELFAQFVAG 410 Query: 415 YGRYLDLLQARAEPDL--IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHP 472 Y ++ E D+ +Q N+ ++LCA+REG G+ +N IE+ + KR I Sbjct: 411 YSAFI------VEKDVRKALQLLNDLRVLCAIREGEEGLYAINRNIEKILHDKRLI--RV 462 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV-WFAMPDGNIKSVQPSRLPEHE 531 ++ +YE RPV++ RN GLFNGD GI QG + WF +G +K++ P L E E Sbjct: 463 NAEFYENRPVILTRNYYEHGLFNGDTGIIRTDEQGVLMAWFEDSNGELKAILPGYLTEAE 522 Query: 532 TTWAMTVHKSQGSEFDHAALILP-SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 T +AMT+HKSQGSEF +ILP ++ P++TREL+YT VTRA++++ + + +L Sbjct: 523 TVFAMTIHKSQGSEFKEVMVILPRAKDVPILTRELLYTGVTRAKQKVYVQSSAEVLLLTA 582 Query: 591 ATRTERRSGLAALFS 605 ER SG+ F+ Sbjct: 583 TRFVERASGIGQRFA 597 >UniRef50_Q8K9A8 Exodeoxyribonuclease V alpha chain n=4 Tax=Buchnera aphidicola RepID=EX5A_BUCAP Length = 602 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 181/608 (29%), Positives = 323/608 (53%), Gaps = 38/608 (6%) Query: 7 LLEAVEHKQLRPL-DVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASH 65 LL+ +K++ L D F+ ++ ++ + L +A +S ++ GH+ LP+ E N Sbjct: 6 LLQNFANKKIITLVDFYFSQFIS-KKNSIIMLISACVSFESKNGHIFLPIEYFEKN---- 60 Query: 66 PLLATCVSEIGELQ--------------NWEECLLASQAVSRGDEP--TPMILCGDRLYL 109 C I Q NW L S+ +S GD TP++ D++YL Sbjct: 61 -----CFFSISNKQFINKILKCLNKKKINWS--LELSEHISCGDGSIITPLVFYKDKIYL 113 Query: 110 NRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVI 169 ++W E+ + E N +D L+ LF + QK+A + L I I Sbjct: 114 YKIWKAEKKILERLYEKNQFDTIDTQQCLNILNNLFSKKKH-DLQKIAVILTLINNIIFI 172 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG-KALRQLPLTDE 228 +GGPGTGKTT + K++ ALI+ A + +L+APTGKA L E L K L + L +E Sbjct: 173 TGGPGTGKTTIILKIIIALIKNAKKKIKI-QLSAPTGKATENLIEILNDKWLNRYLLKEE 231 Query: 229 QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 +K+ T+H+LLG S+++ + N L +D+L++DEASMID+ MMS ++ AL Sbjct: 232 KKQFSFNPIMTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSALSK 291 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG--TGTEAA 346 ++IF+GD +QL V++ ++L IC+YA G++ + L +T + + Sbjct: 292 KTKIIFIGDHNQLKPVKSSSILKYICSYAEDGYSLKTQSILQEITQNSIINYKINKKNTS 351 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 + D +C+L+KSYRF +GI L+ A+ + + +F+ ++ + S +Y Sbjct: 352 YISDKICVLKKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFFYEINSEIEYKK 411 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 M+ + + + + II+ F +Q+LC ++ G FGV +N+ +E+ M ++ Sbjct: 412 MINIIINNNKIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYKRN 471 Query: 467 KIHRHPHSR---WYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTRVWFAMPDGNIKSV 522 ++ + WY G+P++I N+ LG+FNG+IGI L + +V F D I+++ Sbjct: 472 IFNKRFYINNKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIENI 531 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 L ++T+W++TVHK+QGSEF++ +LILP++ ++ ++++YT +TR R++L++++ Sbjct: 532 PIEILKNYKTSWSITVHKAQGSEFNNISLILPNKNLKILKKDILYTGITRTRKQLNIFST 591 Query: 583 ERILSAAI 590 + I + Sbjct: 592 KEIFIKTV 599 >UniRef50_D0KVH2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVH2_HALNC Length = 714 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 214/545 (39%), Positives = 297/545 (54%), Gaps = 45/545 (8%) Query: 99 PMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS-DEINWQKVA 157 P + G LYL R W E+ + + + LD LFP + + +WQK+A Sbjct: 167 PFVREGGLLYLRRYWQQEQGIVAALRSRLTPDALPAEPIRHILDALFPSTIAQPDWQKIA 226 Query: 158 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC----RIRLAAPTGKAAARLT 213 AVA+ RR S+I+GGPGTGKTTTV K L L QM E RIRL APTGKAAARL Sbjct: 227 CAVAIRRRFSLITGGPGTGKTTTVVKFLL-LEQMRALEAGLPPRRIRLCAPTGKAAARLL 285 Query: 214 ES-LGKALRQLPLTD----EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 +S LG+ L D + +K +P+ T+HRL+G +P + A NPL DV+VV Sbjct: 286 QSILGQMDALLAPFDAAFPDLRKALPDTVETVHRLIGVRPNQIHPVYRAENPLPADVVVV 345 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY-ANAGFTAERAR 327 DEASMI + +M++L+ +L + +++ LGD+DQLASVE GAVLG++ + A +TAE Sbjct: 346 DEASMIGVELMAKLLASLDETTQLVLLGDKDQLASVEPGAVLGELSSVIAPDAYTAETRN 405 Query: 328 QLSRLTGTHVPAGTGTEAASLRD-----SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 L+ TG +P + T + + D + L SYRF S S IG LA +N GD + Sbjct: 406 WLAATTGQTLP-DSETNKSIVTDAALAQAAVQLHHSYRFDSASDIGALARCVNAGDASGA 464 Query: 383 KTVFQQDFTDIEKRLLQSGEDYIAM---LEEALAGY----GRYLDLLQARAEPDLIIQAF 435 T+ + + RL+ + + ++E+LA + L A I A Sbjct: 465 LTLLRTNKEQASVRLVADAAGHQPLRRIVQESLAPWLAALNEPLSAENQDARASAIFAAH 524 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 N+ Q+LCALR GP+GV GLN IE +++ + WY GRP+M+ RND AL L N Sbjct: 525 NKAQVLCALRHGPYGVTGLNRWIEDMLRRSGALAV--TGDWYIGRPIMVTRNDPALRLAN 582 Query: 496 GDIGIAL--------DRGQGTRVWFAMP-----DGNIKSVQPSRLPEHETTWAMTVHKSQ 542 G+IGI L RV F + I+ + P RL ET +A+TVHK+Q Sbjct: 583 GEIGITLPYVNPESPQSPPSLRVAFVNEIIEKGESPIRWIAPGRLTACETAFALTVHKAQ 642 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE-----RILSAAIATRTERR 597 GSEFDH+ L+LP+ PV+TREL+YTA+TRAR R +L + +L IA+R +R Sbjct: 643 GSEFDHSVLVLPAMPNPVLTRELIYTAITRARHRFTLVSAPTDTTFTVLKQGIASRVQRS 702 Query: 598 SGLAA 602 L A Sbjct: 703 GQLGA 707 >UniRef50_C1ACJ0 Exodeoxyribonuclease V alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ0_GEMAT Length = 579 Score = 280 bits (717), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 216/571 (37%), Positives = 295/571 (51%), Gaps = 47/571 (8%) Query: 39 AALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSR----G 94 A L+S + G G+ C+ L+ + L + + L +W + L AS +R Sbjct: 36 ALLVSAERGMGNSCVDLAAHAGRIIT---LGSRTVQFPALDDWGDVLRASGVCARVPHTQ 92 Query: 95 DEPTPM-ILCGDRLYLNRMWCNE-RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI- 151 D P+ +L G RLYL R E R + A V+ LFP D + Sbjct: 93 DANVPLFVLEGTRLYLLRYHRAEVRLAEAIVHRAQQATPVEALPDTPRFHALFPAVDGVV 152 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ AAA AL + V G TTVA L AL+ D LAAPTG+AAAR Sbjct: 153 DWQARAAATALASPL-VFVTGGPGTGKTTVAARLLALLLHRD-PTLTFALAAPTGRAAAR 210 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 L+E++G A + L + TLHRLLG +QR RHHA PL DV++VDEA Sbjct: 211 LSEAIGAAALRDALHELAPSLPGVSGKTLHRLLGYHTATQRFRHHAQRPLAEDVVIVDEA 270 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SMID+ MM L AL AR+I LGD DQLASV+ G VLGD+ A+ Sbjct: 271 SMIDVLMMDALFAALKPSARLIVLGDPDQLASVDTGFVLGDVTRAAH------------- 317 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDF 390 +++++R S+ L S+RFG GIG LA A G+ + A++ + Sbjct: 318 ---------DAVKSSAIRRSVVRLAYSWRFGQQVGIGLLAEATRVGESQQAMRALQDTAL 368 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG 450 TD+ +L +E LA ++ A P + A +++LCALR+GP G Sbjct: 369 TDVAWQLPHRSA------QELLAPVEPHVQAFLATDTPVAALAALARFRVLCALRDGPGG 422 Query: 451 VAGLNERIEQFMQ-QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR 509 V GLN E ++Q Q R + WY+ RPV++ ND+A L+NGD+G+ L Sbjct: 423 VTGLNALTEGWLQRQGRAV-----MGWYDHRPVLVTANDAATQLYNGDVGVTLAIDGVPM 477 Query: 510 VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 V F DG ++S PS+LP HET WAMTVHKSQGSEFDH ++LP + V+TREL+YTA Sbjct: 478 VHFPASDGGVRSFMPSQLPAHETAWAMTVHKSQGSEFDHVLVVLPEADSRVLTRELLYTA 537 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGL 600 VTRARR +++ +R++ AAI R SGL Sbjct: 538 VTRARRSVTISGSDRMIEAAIHRSVVRGSGL 568 >UniRef50_D1N1Q4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q4_9BACT Length = 635 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 231/638 (36%), Positives = 318/638 (49%), Gaps = 71/638 (11%) Query: 15 QLRPLDVQFA---LTVA-GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLAT 70 + P+D+ FA L A E + LAA S H C PL L +L Sbjct: 14 EFEPIDLAFADFMLRFARAPECEELYLAALFASRAVRLSHSCCPLRELAG------MLFP 67 Query: 71 CVSEIGELQ-------NWEECLLA---SQAVSR------GDEPTPM-ILCGDRLYLNRMW 113 G+ Q W E L A + AVSR PTP+ I RLYL R Sbjct: 68 ETPAEGQRQFRLPGCDAWLERLSAPALAAAVSRYPACRDAGFPTPLAIDDAGRLYLQRYL 127 Query: 114 CNERTVARFFNEVNHAIEVDEALLAQTLDKLF------PVSDEINWQKVAAAVALTRRIS 167 E VA+ E L D LF D ++Q++AA A +R + Sbjct: 128 VYELQVAQAVMHRARRPEHPPELPPGAFDALFINYRNGAAEDRPDFQRLAALAAASRDFT 187 Query: 168 VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 VISGGPGTGKTT VA LLA ++ A R+ L APTGKA ARL E+L + ++ + Sbjct: 188 VISGGPGTGKTTVVAALLA--LEFARAPELRVALCAPTGKAQARLGEALREDGLKIGTAE 245 Query: 228 EQKKRIPEDA-STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 ++RI E A ST+ RL+G+ P + R ++HAGNPL D+++VDE+SM+ LP+M+RL+ AL Sbjct: 246 AIRRRILELAPSTIDRLIGSAPLTHRTKYHAGNPLPFDLVIVDESSMVSLPLMARLMQAL 305 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDIC--AYANAGFTAERARQLSRLTGTHVPAGTGTE 344 R+I LGD +QLASVE+GAVL DIC NA A R L + G + + Sbjct: 306 APETRLILLGDPNQLASVESGAVLADICDSGKRNAFSGAIREAYLRQSPGVFL--AEPDD 363 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAIN--RGDKTAVKTVFQQDF-----TDIEKRL 397 A L +L L ++RF + IG++++AI + T K DF D + + Sbjct: 364 ARPLTGALAELTHNFRFDTAPAIGEVSSAIKLLQDGATPEKIEGLTDFIHHQQNDDFRTI 423 Query: 398 LQSGEDYIAMLEEALA-----GYGRYLDL--LQARAEPDLIIQAF---NEYQLLCALREG 447 + + A L + LA G +L L L + + +AF N +++L A+R G Sbjct: 424 AVTRDQLSARLRQELARELPGKRGCFLRLAELAEAGTAEALTEAFGLLNAFKVLAAVRRG 483 Query: 448 PFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG 507 PFGV LN I + K S G PVMI ND GL NGDIG+ G Sbjct: 484 PFGVEELNRLIRELFHWK--------SDDTPGMPVMILANDRLTGLSNGDIGLFWKDLAG 535 Query: 508 T---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 + R++F G +S + LPEHE +AMT+HKSQGS F A L+LP +PV+TRE Sbjct: 536 SGAIRIYFP---GFERSFLAAELPEHEPVFAMTIHKSQGSGFSRALLVLPDGDSPVLTRE 592 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 L+YT +TRA + + L++ + + RT R SGL A Sbjct: 593 LLYTGITRASKEVVLWSTPAVTRLMLERRTRRASGLQA 630 >UniRef50_Q6ANK0 Related to exodeoxyribonuclease V, alpha chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK0_DESPS Length = 527 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 202/543 (37%), Positives = 284/543 (52%), Gaps = 80/543 (14%) Query: 37 LAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE 96 + + L+ H AG G C+ L++ GEL + L++Q + Sbjct: 31 IISGLMQHLAG-GSSCVELAK------------------GELALLGKSTLSTQVAGIDET 71 Query: 97 P-TPMILCGDRLYLNRMWCNERTVARF---FNEVNHAIEVDEALLAQTLDKLFPVSDEIN 152 P TP++L G RLYL R + E +AR + + +D LLA T + +E N Sbjct: 72 PLTPLVLYGRRLYLQRYFVYEARLARQLLDYASGQSVLRIDPDLLAATFPEELDEGEE-N 130 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q+ AA AL V+SGGPGTGKTTTV ++LA L+ A G + + LAAPTGKAA RL Sbjct: 131 HQQKAAEKALQTPFLVVSGGPGTGKTTTVVRILA-LLHHAIGHKLDVALAAPTGKAAQRL 189 Query: 213 TESLGKALRQLPLTDEQKKR-----IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 ES+ +LP EQ +R +PE A TLHRLLG Q S R RH+ NPL D+++ Sbjct: 190 YESILGGADRLP---EQLRRDVGEWLPEKAVTLHRLLGTQLNSTRFRHNRENPLGWDLVL 246 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DEASMIDL MMS+L+DAL R+I LGD+DQLASVE+G VL + + Sbjct: 247 LDEASMIDLAMMSKLVDALKPGGRLILLGDKDQLASVESGTVLATVIS------------ 294 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 L+R + L K+YRF + I +A A N G+ Sbjct: 295 GLARCSAQ-------------------LIKTYRFNDE--IKAIAIATNAGNG-------H 326 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 + + +EKR + ED+ A +E Y + +L D + ++ +LC R G Sbjct: 327 RAWQLLEKRAV---EDWQAYIEGNYRKYISSVQMLSGSGAED-AFASLKKFMVLCGTRRG 382 Query: 448 PFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG 507 V G+N+ +E+ + R+ R +S WY GRP++I++ND LGL+NGDIGI L G Sbjct: 383 RRAVEGINQMVEEDLL--RQGLRGSNSSWYIGRPILISQNDYNLGLYNGDIGICLPDEDG 440 Query: 508 T-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 +VWF G P L +++T +AMTVHKSQGSEF ++LP + PV+ REL+ Sbjct: 441 MLKVWFETGSGTFIRFLPVALSDYDTVFAMTVHKSQGSEFTEVMMVLPIEDNPVLCRELI 500 Query: 567 YTA 569 YT Sbjct: 501 YTG 503 >UniRef50_C1AXR1 Exodeoxyribonuclease V alpha chain n=5 Tax=Nocardiaceae RepID=C1AXR1_RHOOB Length = 623 Score = 257 bits (656), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 214/622 (34%), Positives = 306/622 (49%), Gaps = 71/622 (11%) Query: 20 DVQFAL---TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIG 76 DV AL + G+ V LA AL G VCL L+R+ V E Sbjct: 27 DVHVALRLSALGGESSEDVVLATALAVRAVRSGSVCLDLTRIRE---------VTVDEES 77 Query: 77 ELQ----NWEECLLASQAVSRGDEPT--------PMILC----GDRLYLNRMWCNERTVA 120 E+ W E A+ R T P+ L G LYL+R + E T+ Sbjct: 78 EVDLDALPWPEDSTVVAALRRSPLVTGGPAGPLRPLRLVDTAEGGLLYLDRYFRQEATIR 137 Query: 121 RFFNE--VNHAIEVDEALLAQTLDKLF----------PVSDEINWQKVAAAVALTRRISV 168 R +E V + + VDE L + LD+LF P D Q++AAAVA T+ SV Sbjct: 138 RVLDERAVGYPL-VDERSLREGLDELFRDQHDHTAPAPSPDR---QRIAAAVAATQWTSV 193 Query: 169 ISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE 228 + GGPGTGKT TVA+LLA L + G RI LAAPTGKAAARL ES+ + L L E Sbjct: 194 VVGGPGTGKTHTVARLLALLTRQP-GPGRRIALAAPTGKAAARLQESVREQADALGLPPE 252 Query: 229 QKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 +A TLHRLLG Q G R R +A N L DV+VVDE SM+ L MM RL+ A+ Sbjct: 253 L------NAMTLHRLLGWQRGRGARFRFNANNHLPYDVIVVDETSMVSLTMMCRLLAAVR 306 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG------- 340 R++ +GD DQL SV+AGAVL D+ A +G L R+ G + A Sbjct: 307 PDTRLVLVGDPDQLTSVDAGAVLADLVARPVSGTENP---VLGRVVGADLDAADDPLEAA 363 Query: 341 -TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 + +E LR + L + RFG GI +LA A+ G++ V + + + Sbjct: 364 LSASERDRLRGGVVRLSRGRRFGG--GIAKLAVAVRDGEEELVIDILRGGGA---PEVSF 418 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 G + + L + + + +Q +++LLCA REGP+GV + Sbjct: 419 HGPEDLDALRADVVATAAAVTDSAESGDASAALQHSEKHRLLCAHREGPYGVQRWARQAM 478 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNI 519 +++ + P RWY G+P+M+ ND ++NGD G+ + R ++ A G Sbjct: 479 EWIGETTGQRLDP-DRWYPGQPLMVTANDHETKIYNGDTGVIVRRDD-DELFAAFVRGTE 536 Query: 520 KSV-QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 + P+ L +T +AMT+H+SQGS++D +++LP + ++TREL+YTA+TRAR + Sbjct: 537 PFLLHPTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGAASSLLTRELLYTAITRARNHVR 596 Query: 579 LYADERILSAAIATRTERRSGL 600 + E + A + R R SGL Sbjct: 597 IIGTEDAVRAGVQRRVLRASGL 618 >UniRef50_Q0BMQ9 Exodeoxyribonuclease V n=20 Tax=Francisella RepID=Q0BMQ9_FRATO Length = 622 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 187/525 (35%), Positives = 284/525 (54%), Gaps = 75/525 (14%) Query: 105 DRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTR 164 D LY+ R+W E +A F + + + +DKLF + EINWQK A +L Sbjct: 145 DSLYIKRLWNYENEIANFIKLKTIQNTQKDNRIEEVVDKLFEPAGEINWQKQAVIKSLNY 204 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL- 223 S+ISGGPGTGKTTTVAKLL A IQM + + RI L APTGKAA R+TESL L + Sbjct: 205 NFSIISGGPGTGKTTTVAKLLLA-IQMLNQNQQRIALLAPTGKAAQRMTESLKNTLATVI 263 Query: 224 --PLTDE---QKKRIPE----------------DASTLHRLLGAQPGSQRLRHHAGNPLH 262 LT E QK I + +A T+HR LG +P S ++++ + Sbjct: 264 PSSLTTESTIQKNDIFKQVQDELNSVAQYLNNLEAQTIHRFLGLRPNSTYVKYNQQSKAP 323 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 DV++VDEASM+D+ + +LI A+ D+ ++I +GD +QL SVEAG++L A FT Sbjct: 324 FDVIIVDEASMLDMNIFIKLIRAVADNTKLILIGDTNQLPSVEAGSLL--------ANFT 375 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 ++ G+ P T LL K+YR S I LAA++ +GD V Sbjct: 376 HDKY-------GSITPYTT------------LLIKNYR--SQQYINNLAASVLKGD---V 411 Query: 383 KTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG-RYLDLLQARAEPDLIIQAFNEYQLL 441 QQ+ +I+ L++ + Y L Y RY L + R + + + N++++L Sbjct: 412 NIDSQQN-ENIKFHSLRNLDIY-------LREYAKRYSQLEKCRDYKEALTE-LNKFRIL 462 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 A + G LN++IE+FM + P Y+G+P+MI +N +LGLFNGD+GI Sbjct: 463 VANKNLEIGTDKLNQKIEKFMSK-------PIDSNYKGKPIMITQNSYSLGLFNGDVGIM 515 Query: 502 LDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 G R +F D K+ + LP++E+ +AMT+HK+QGSEFD +ILP++ Sbjct: 516 WPDDTGKLRAYFDGKDA--KAFSLNMLPKYESVYAMTIHKTQGSEFDEIVIILPAEDNEA 573 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 ++++L+YTA+TRA+ +L++ +++ L +R S ++ L S Sbjct: 574 LSKQLLYTAITRAKYKLTIISEQSSLRDIAQKDIKRNSNISELVS 618 >UniRef50_Q057F4 Exodeoxyribonuclease V, a chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F4_BUCCC Length = 593 Score = 254 bits (650), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 163/575 (28%), Positives = 292/575 (50%), Gaps = 31/575 (5%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN--WEECLL 86 + P V L L + A GH C+P + + + I N W ++ Sbjct: 36 SNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVI 95 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP 146 +S S G + TP+++ +YL + W +E + + + ++ + + K Sbjct: 96 SSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCS 155 Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 + N QK A AL + + GGPGTGKT +A L+ LI+++ + +I+L APTG Sbjct: 156 NYIDKN-QKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKI-KIQLTAPTG 213 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR-HHAGNPLHLDV 265 KA +LT+S+ K L++ + +KK IP++ TLH+L Q + + + +D+ Sbjct: 214 KAVNKLTQSIYKILKKKNIQKNEKKMIPKEGITLHKLFKIQKETNKNNAKYIKRKKKIDI 273 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAER 325 L++DE+SMI L +M ++ + ++IF+GD QL SVE G++L Sbjct: 274 LIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSILKK------------- 320 Query: 326 ARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 + + +L+K+YRF +SGI L + + + + Sbjct: 321 ------------ICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKI 368 Query: 386 FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR 445 +++ + DI + L + DY+ ML++ Y +Y + + + P II FN+Y++LC + Sbjct: 369 YKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNKYRILCIIN 428 Query: 446 EGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 +G FG +N+ ++ + + + WY G+P++I +N+ L L NGDIGI L + Sbjct: 429 KGIFGTKKINQYLDNYFIKINN-KKKKKEFWYHGKPIIIKKNNIFLKLMNGDIGICLYKK 487 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 + +++F + G IK P L ++T W+ T+HKSQGSEF +I+P+ + ++EL Sbjct: 488 KKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKEL 547 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 YTA++RA++++++YA+++IL+ I ER SGL Sbjct: 548 FYTAISRAQKKVTIYANKKILNKIINNNKERYSGL 582 >UniRef50_C0VHS0 Exonuclease V alpha subunit n=7 Tax=Acinetobacter RepID=C0VHS0_9GAMM Length = 601 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 263/488 (53%), Gaps = 77/488 (15%) Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 E +Q+ A + L + +S+I+GGPGTGKT T+A+++AAL QM RI +AAPTGKAA Sbjct: 145 EDEFQQAALKMVLQQWVSIITGGPGTGKTYTLARIIAALNQMIPD--IRIAMAAPTGKAA 202 Query: 210 ARLTESLGKALRQLPL------TDEQKKRIPEDASTLHRLLGAQPGSQRL-RHHAGNPLH 262 R+ E+L + L TDE + + TLHRLLG G++++ R + PL Sbjct: 203 QRMQEALQNSFNDPKLIASGLVTDELRN---QSTQTLHRLLGM--GNRQIPRFNVKQPLP 257 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 DV+VVDEASM+DL + + L +A+PD R+I LGD +QLASV+ G+VL D+ Sbjct: 258 YDVIVVDEASMLDLNLATALFEAVPDSCRIILLGDANQLASVDVGSVLADL--------- 308 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 + L ++ LQ S RF + IGQLA I + + + Sbjct: 309 --------------------QQVEGLAENRVQLQNSRRFSDKAKIGQLARFI-QAQQASS 347 Query: 383 KTVFQQDFTDI-------EKRLLQSGEDYIAM--------------LEEALAGYGRYLDL 421 ++V Q +I E L + D I + ++ + G+ Y ++ Sbjct: 348 ESVLTQLEHEIVKPAPLQEMSLSKEMPDAIQLEYLPEQLDIEIEQYQQKLMYGFNDYAEI 407 Query: 422 LQARAEPDL-------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 L++ D +I+ F++Y++L A++ G G+ LN E+++ Q+ K + + Sbjct: 408 LKSYLHADQPEQYIQDVIRVFDDYRILAAVKHGALGIEQLNRYAERWLNQQLK--QIAVA 465 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALD-RGQGTRVWFAMPDGNIKSVQPSRLPEH-ET 532 WY GRPVM+ ND LG+ NGDIGI R Q + P N K + RLP + +T Sbjct: 466 EWYVGRPVMMTYNDYQLGISNGDIGICFKHRTQAQQFEVFFPSLN-KWIAAHRLPRNMQT 524 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 +A+T+HKSQGSEF H A++L + ++++EL+YTAVTRA++ ++L AD L A+ Sbjct: 525 AFALTIHKSQGSEFTHTAIVLDANAKKLLSQELIYTAVTRAKKVVTLLADPNALLQALTV 584 Query: 593 RTERRSGL 600 RT RRSGL Sbjct: 585 RTVRRSGL 592 >UniRef50_A5WER9 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Psychrobacter RepID=A5WER9_PSYWF Length = 787 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 195/574 (33%), Positives = 297/574 (51%), Gaps = 129/574 (22%) Query: 107 LYLNRMWCNERTVARFF-NEVNHAIEVDEALLAQTLDKLFPVSDEINWQKV-AAAVALTR 164 +L+R W E +A+ N +N I+ LD P D +N Q+V A VA Sbjct: 266 FWLHRTWQAEFNLAKTIQNILNQPIK--------PLDIHIP--DNLNAQQVQAVKVANEN 315 Query: 165 RISVISGGPGTGKTTTVAKLLAAL--------IQMADGERCRIR---------LAAPTGK 207 S+I+GGPGTGKT TVA+L+ AL Q A GE IR L+APTGK Sbjct: 316 AFSIITGGPGTGKTYTVAQLVIALQQAQANSDAQQALGEGSTIRFSTDSAGLALSAPTGK 375 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG-AQPGSQRLRHHAGNPLHLDVL 266 AA R+ ESL Q L + Q + ++A T+HRLLG + G R R+HAGNPL D++ Sbjct: 376 AAQRMQESL-----QAALDNAQVEVQLQEAKTIHRLLGIGRDG--RPRYHAGNPLGEDII 428 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 +VDEASM+ + + + L+ A+ AR+I LGD +QLA+V+AGAVL D+C Sbjct: 429 IVDEASMLGVELANYLVSAIKPGARLILLGDANQLAAVDAGAVLADLC------------ 476 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 ++ L H L +S RF +DSGIG+LA IN T ++ V+ Sbjct: 477 -RIDVLQPIHAQ----------------LTESRRFHADSGIGKLATQINTT-PTDMQQVW 518 Query: 387 Q-----------------------QDFTDIEKRLLQ-------SGEDYIAMLEEALAGYG 416 Q ++ D+E + S + I+ L + Y Sbjct: 519 QLLTHDEALQFQSVNIQLGSDATDREADDVETAVFNHQLINSLSNKKIISKLSQ---NYL 575 Query: 417 RYLDLLQ-------ARAEPDLI-------IQAFNEYQLLCALREGPFGVAGLNERIEQF- 461 YL+ + A++ P+ + + FN +++L A G +G +N+ + ++ Sbjct: 576 PYLNKIHQLIKHPIAKSVPEAVSLTVSELMSKFNRFRILTAGHNGEWGDHNINDYLTRWH 635 Query: 462 -MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTR--VWFAMP 515 Q K + + P W+ GRPVM+ +N+ LGLFNGDIGI L +G+G R V+F Sbjct: 636 MTQLKLPLGKSP---WFHGRPVMVLQNNYELGLFNGDIGICLQTQQKGEGGRLEVFF--- 689 Query: 516 DGNIKSVQPSRLPEH--ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 + I+ + + L + T +AMT+HKSQGSEFDH A+ + + ++++EL+YTAVTRA Sbjct: 690 ENKIQGIAVNLLNDELIATAYAMTIHKSQGSEFDHVAVTFDNSNSRLLSKELIYTAVTRA 749 Query: 574 RRRLSLYADERILSAAIATRTERRSGLAALFSSR 607 ++++S+++ +R L A+ T T+R +GLA F + Sbjct: 750 KKKVSIFSTKRALQKAVQTPTQRYTGLALQFEQK 783 >UniRef50_UPI0001C3224F exodeoxyribonuclease V, alpha subunit n=2 Tax=Actinobacteria (class) RepID=UPI0001C3224F Length = 616 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 203/542 (37%), Positives = 283/542 (52%), Gaps = 52/542 (9%) Query: 77 ELQNWEECLLASQAVSRGDE----PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE- 131 E W L V GDE TP+ L G LYL+R W ER VA A+ Sbjct: 97 ETGAWVAALAGCALVGVGDEDGADTTPLRLVGTALYLDRYWREERQVAADLRGRLEALPA 156 Query: 132 -VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ 190 VDEA L L +L P D+ Q+ A A A RR + ++GGPGTGKTTTVA++ A +++ Sbjct: 157 GVDEAALTARLKRLAP--DDAR-QRNAIAAAAVRRFATVAGGPGTGKTTTVAQIAALVVE 213 Query: 191 MADGER---CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE-DASTLHRLLGA 246 A E I LAAPTGKAAARL E + QL T + ++++ ASTLHRLLG Sbjct: 214 QARAEGRPVPLIALAAPTGKAAARLEEQVHHRAAQLDTTPDVREQLAGLRASTLHRLLGW 273 Query: 247 QPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 +PGS R RH L D+++VDEASM+ L +M+RL++A+ AR++ +GD DQLAS+E Sbjct: 274 RPGSHSRFRHDRHARLPHDMVIVDEASMVSLTLMARLLEAVRPDARLVLVGDPDQLASIE 333 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 AGAVLGDI A G + L++ YRFG+ Sbjct: 334 AGAVLGDIVRAARPGA-----------------------------GIVQLERVYRFGA-- 362 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED------YIAMLEEALAGYGRYL 419 GIG ++AA+ GD A+ ++ + +G+ +A + +A GR + Sbjct: 363 GIGAVSAAVRAGDADALVAALVSAPAEVTWIPIDAGDPATATAAVLAPVRDAATRAGREV 422 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 + + A ++LLCA R GP GV +E ++ +R Y G Sbjct: 423 IAAALGGDGRAALDALGAFRLLCAHRRGPHGVTTWMPLVEGWLAGDIAAT-GTWARDYPG 481 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 RP++I ND L LFNGD G+ + G G I +V+P+RL +T AMT+H Sbjct: 482 RPLLITANDYDLDLFNGDTGVVVASPSGGLTAAFERRGEIVAVRPARLRAVDTVHAMTIH 541 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSG 599 KSQGS+F AA+++P+ + ++TREL+YTAVTRARR L + E L AA+ R SG Sbjct: 542 KSQGSQFGTAAVVVPAADSRILTRELLYTAVTRARRHLIVIGTEDALRAAVHRPAARASG 601 Query: 600 LA 601 L+ Sbjct: 602 LS 603 >UniRef50_Q6FF15 Exonuclease V, alpha subunit n=11 Tax=Acinetobacter RepID=Q6FF15_ACIAD Length = 592 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 195/559 (34%), Positives = 294/559 (52%), Gaps = 63/559 (11%) Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER----TVARFF 123 L S + EL N+ L +QA + + PMI G+ L L R W E+ V R Sbjct: 55 LVVSSSIVAELGNY--VLDEAQAQT---QVAPMIYDGELLALYRYWMLEQRLAIQVVRLS 109 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 +V +EV + L ++D Q+ A ++ T+ S+I+GGPGTGKT T+A+ Sbjct: 110 QQVIPPVEV--------MPHLDLLTDP--HQQAAMSMVATQAFSLITGGPGTGKTYTLAR 159 Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT------DEQKKRIPEDA 237 ++A L Q RI +AAPTGKAA R+ E+L + LT E K++ + Sbjct: 160 IIAVLNQAIPN--IRIAMAAPTGKAAQRMQEALQASFNDEKLTASGLLSHELKQQTTQ-- 215 Query: 238 STLHRLLGAQPGSQRL-RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 TLHRLLG G Q+L R HA PL DV+VVDEASM+DL + + L +A+P R+I LG Sbjct: 216 -TLHRLLGL--GHQQLPRFHAKQPLPYDVIVVDEASMLDLKLATLLFEAVPAGCRLILLG 272 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT-EAASLRDSL--- 352 D +QLASV+ G+VL D+ A +++ +T G E A L Sbjct: 273 DANQLASVDVGSVLADL-----QQVEALEQNRVNLVTSRRFREGAKIGEFAQFIQCLDVT 327 Query: 353 -----CLLQKSYRFGSDSGIGQLAAAINRGDKTAVK----TVFQQDFTDIEKRLLQSGED 403 L + ++ + ++ +R D ++ V + T ++L+Q E Sbjct: 328 WDPQQILHEFEHQIAVPQALQPVSLLHDRDDMVQLEYLPPKVNLEHLTPYYQKLMQGFET 387 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 + L+ + R D A +E +IQAF++Y++L A+R G FG+ +N+ +EQ++ Sbjct: 388 FAQQLK-----HYRLHDY--AESEVAAVIQAFDDYRILVAIRFGDFGLEHINKMVEQWLT 440 Query: 464 QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNIKSV 522 Q I P WY GRPVM+ ND LGL NGDIGI R Q + P + K + Sbjct: 441 QYLGIL--PVGGWYIGRPVMMTYNDYQLGLSNGDIGICFRHRTQYDQFEVYFPSLD-KWI 497 Query: 523 QPSRLPEH-ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 +RLP++ +T +A+T+HKSQGSEF H A++ V+++EL+YTA+TRA++ +SL Sbjct: 498 AANRLPKNIQTAFALTIHKSQGSEFRHTAIVFDHMAQKVLSQELIYTAITRAKQAVSLLV 557 Query: 582 DERILSAAIATRTERRSGL 600 D+ L ++ RT R+SGL Sbjct: 558 DQDALLQSLIIRTTRKSGL 576 >UniRef50_Q8PEL4 Exodeoxyribonuclease V alpha chain n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PEL4_XANAC Length = 685 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 176/453 (38%), Positives = 235/453 (51%), Gaps = 55/453 (12%) Query: 198 RIRLAAPTGKAAARLTESL----GKALRQ-----------LPLTDEQKKR---------- 232 RI LAAPTG+AA R+ ESL +A+ Q LP E +R Sbjct: 204 RIALAAPTGRAAERMAESLRIALARAIEQGLPAEHQGASPLPPAGEGARRAGEGTAPTDF 263 Query: 233 -----IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 +P ASTLHRLLG P S RH A NPL D++VVDEASM+DLP+M +L+DA+ Sbjct: 264 SWHSALPTGASTLHRLLGVIPDSPHFRHDADNPLPFDLIVVDEASMVDLPLMCKLVDAVA 323 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT--AERARQLSRLTGT---HVPAGTG 342 D ++I LGD DQL SVEAG VL I A G T + AR L L G PA + Sbjct: 324 DGTQLILLGDADQLPSVEAGDVLAAILRAAGPGDTLPPDDARALQPLLGNAPVTAPAAS- 382 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSG 401 T L L + YR +D + LA A+ GD +TA+ + + + G Sbjct: 383 TPVGHLAGHRVHLLRGYRQAADFALAPLADAVRIGDAETALSLLRSGTLPGVH--FHEDG 440 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 +D +++ EAL + + L A +P ++ +LL A+R GP G GLN RIEQ Sbjct: 441 DDPLSLGREALLAHWQA---LTATNDPADALRQAGRLRLLTAVRAGPQGARGLNARIEQL 497 Query: 462 MQQKRKIHRH--PHSRWYEGRPVMIARNDSALGLFNGDIGIAL----------DRGQGTR 509 + + R S W+ GR ++I N GLFNGD+GI L D Sbjct: 498 LAESGSGARRLGAASPWFHGRLLLITENSYRHGLFNGDVGICLRSEASPASVRDPQAALV 557 Query: 510 VWF-AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 WF DG ++ P+ LP HE+ +AMTVHK+QGSEFD L LP++ V++REL+YT Sbjct: 558 AWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLYT 617 Query: 569 AVTRARRRLSLYADERILSAAIATRTERRSGLA 601 +TRARR L L E ++ +A+A R SGLA Sbjct: 618 GITRARRALHLAGSEAVIRSALARHAARISGLA 650 >UniRef50_B2I7Y3 Exodeoxyribonuclease V, alpha subunit n=10 Tax=Xanthomonadaceae RepID=B2I7Y3_XYLF2 Length = 639 Score = 245 bits (626), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 170/419 (40%), Positives = 227/419 (54%), Gaps = 30/419 (7%) Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK---RIPEDASTLHRLLGAQPGSQRLR 254 RI LAAPTG+AA R+ ESL A + +P AST+HRLLG P + R R Sbjct: 204 RIALAAPTGRAAERMAESLRAAAGHVSAAGGDAALFAALPSGASTVHRLLGVIPDTPRFR 263 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 H NPL DV+VVDEASM+DLP+M +L+DA+ D ++I LGD DQL SVEAG VL I Sbjct: 264 HCEDNPLPYDVIVVDEASMMDLPLMCKLVDAVADGTQLILLGDPDQLPSVEAGDVLAGIL 323 Query: 315 AYANAG--FTAERARQLSRLTGTHVPAGTGTEAASLRDSL----CLLQKSYRFGSDSGIG 368 A A +G A+ L+ L G A E +R L LQ S+R G D + Sbjct: 324 AAAGSGEVLDVADAQVLAPLLGAP-SAAVVAECHVVRGGLHGHRVHLQHSHRQGEDLALA 382 Query: 369 QLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL----DLLQA 424 LA A+ GD TAV + +R G + + + G G+ L L A Sbjct: 383 PLAEAVRLGDATAVLGML--------RRGTLRGVQFHEGVLDPCVGAGQVLLAHWRALAA 434 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 ++P + A +LL ALREGP G AG+N RIE+ + ++ GR +++ Sbjct: 435 LSDPVQALAAAGRLRLLTALREGPQGAAGINARIERLLGGGGV------DGYFHGRLLLM 488 Query: 485 ARNDSALGLFNGDIGIALDRGQGTR-VWFAMPDG-NIKSVQPSRLPEHETTWAMTVHKSQ 542 S LFNGDIG+ L GT WF+ G +++ P+ LP HE+ +AMTVHK+Q Sbjct: 489 TETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGEGVRAFAPAALPAHESAFAMTVHKAQ 548 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 GSEFD L LP Q + V++REL+YT +TRAR L + E +L AA+A + R SGLA Sbjct: 549 GSEFDTVWLQLPRQESRVLSRELIYTGLTRARHGLHVAGSESVLCAALARQAVRVSGLA 607 >UniRef50_B4RTM2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RTM2_ALTMD Length = 731 Score = 245 bits (625), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 200/599 (33%), Positives = 289/599 (48%), Gaps = 97/599 (16%) Query: 94 GDEPTPMILCGD--RLYLNRMWCNERTVARFFNE--VNHAIEVDEALLAQTL-DKLFPVS 148 G+E + D RLY R + E+ VAR E V H + D A + L +FP + Sbjct: 136 GNEQLAKLFVYDNGRLYSRRYYEFEQEVARSVVERAVLHPLHDDVADNVKALWPAIFPTT 195 Query: 149 --DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 D+ +WQ++A A +L +R VI+GGPGTGKT TV +LL AL Q D E +I LAAPTG Sbjct: 196 TTDQQDWQQIAVAKSLMQRFCVINGGPGTGKTYTVLRLLLAL-QACD-EELKIVLAAPTG 253 Query: 207 KAAARLTESLGKALRQL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 KA R+TES+ ++ L ++D +P +A TLHRLLG + +++ N L D Sbjct: 254 KAQQRMTESIMNSVEGLRGKVSDTALDSVPTEAVTLHRLLGLREHGVATKYNQHNKLSAD 313 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC--------AY 316 VL+VDEASM+DL +M+R++ ALPDHAR+ F+GD DQL +VE G VL + ++ Sbjct: 314 VLIVDEASMVDLALMTRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSDETALDFSH 373 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL-----QKSY--------RFGS 363 N E + L G VP+ A+L L LL KSY RF Sbjct: 374 ENPLAGGENSSNERTLGG--VPSSMRQHIATLCPHLPLLPVNEQAKSYVATLQAPQRFKG 431 Query: 364 DSGIGQLAAAINRGDKTAV--------------------KTVFQQDFTDIEKRLLQSG-- 401 + ++A AI RGD K+ ++ + LQ G Sbjct: 432 Q--VARVATAIQRGDANGALAAIAQKNSGSKQGDNASQPKSADEKSINTNSRSRLQPGVH 489 Query: 402 ---EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 E + E +L L +A++ + + N + L +R+G GV GLN + Sbjct: 490 LWPESQLGGRELQQLAKESFLPLFEAQSAEE-ALNRLNYVRWLTPIRKGAMGVEGLNNLV 548 Query: 459 EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWF---AM 514 F K KI R +Y+G+P+MI +N L NG++G+ G WF Sbjct: 549 --FDAIKHKIRRR-EGHFYQGQPIMIVKNHHPQRLSNGEVGVIWPDSTGKLYAWFYQDTY 605 Query: 515 PDGN------------------------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 +G ++S+ SR+P+ ET +AMT+HKSQGSEF+H Sbjct: 606 VEGQQAGKSLNDSSNNSSAQNLGQQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNHVV 665 Query: 551 LILPSQRTP----VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 LILP + + R LVYT +TRA+ + +D S +AT +R SGL++ S Sbjct: 666 LILPKPESEKAANLFHRGLVYTGLTRAKDGCLIISDSNTFSGMVATVDKRYSGLSSAIS 724 >UniRef50_A5EVY1 Exonuclease V, alpha subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVY1_DICNV Length = 524 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 185/528 (35%), Positives = 279/528 (52%), Gaps = 65/528 (12%) Query: 84 CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDK 143 L+ + ++ P++ G L+L R+W E +A + +A D+++L Sbjct: 55 ALIVTADAAKKGAVAPLVSDGTFLWLYRLWFQEWRLASCIQKKLNA--ADDSILEHN--- 109 Query: 144 LFPVSDEINW-QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 D +N QK A + LTR++S+I+GGPGTGKT TVA+++AAL +A I LA Sbjct: 110 --SFDDGLNAEQKQALKMGLTRQLSIINGGPGTGKTFTVARIVAAL--LARDPDLTIALA 165 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA-QPGSQRLRHHAGNPL 261 APTGKAA RL +L +A LT + A T+HRLLG G+ R H P Sbjct: 166 APTGKAAQRLEIALHQAFITAQLTRPTQLTT---AQTVHRLLGVDNTGTARYHEHYFLPY 222 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 DV+++DEASM+ L + ++L AL H R+I LGD QLA+VEAGAVL D+ Sbjct: 223 --DVVIIDEASMLSLELAAQLFQALAPHTRIILLGDAQQLAAVEAGAVLHDLA------- 273 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 + ++L + LQ+S RF SGIG LA +TA Sbjct: 274 ----------------------QQSALNHHVVTLQESRRFHQTSGIGILARCTQNASQTA 311 Query: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 + + + DI L +Y + E Y Y+ + A A D+++Q F+ Y++L Sbjct: 312 LTAALEHE--DIALSPLARRPNYDRLYEP----YRDYVAKVAAGAAVDVLLQQFDNYRIL 365 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 R G +G A +NE++++ + ++ + +Y+G PVM+ RN+ A G+FNGDIGI Sbjct: 366 TKTRYGAYGTAAVNEQMKK--RHLAQMGVNGKRAFYQGAPVMVTRNNYAHGVFNGDIGIC 423 Query: 502 L--DRGQGTRVW---FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 L +RGQ + FA+P +KS + + +A+T+HK+QGSEF+ AL+L Q Sbjct: 424 LADERGQMLVYFREDFAVPLLFLKS------DDLDFAYALTIHKAQGSEFEQVALLLDKQ 477 Query: 557 RTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +TRELVYT +TRA+++L L IL A+ T T+R +GL+ F Sbjct: 478 EEG-LTRELVYTGITRAKKQLLLETTPAILLKAMQTPTQRLTGLSTFF 524 >UniRef50_C8XGW8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGW8_NAKMY Length = 632 Score = 242 bits (618), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 222/587 (37%), Positives = 302/587 (51%), Gaps = 58/587 (9%) Query: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLL 86 +AG+ V LA A+ G VC+ L++ LLA + L +W + + Sbjct: 50 LAGEPDDRVRLAVAMAVRGIRSGSVCIDLAQARATL----LLADPGGDWPVLPDWRDAVR 105 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE--VNHAIEVDEALLAQTLDKL 144 AS V G P+ D LYL+R E+ V + VD LA LD+L Sbjct: 106 ASLLVGAG---RPLQWEFDLLYLDRYRTQEQQVRDDLRDRRAQPPPVVDRVALADGLDRL 162 Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 F D Q+ AA +A T +VI GGPGTGKTTTVA++LA L+ G R R+ +AAP Sbjct: 163 FAGGDP--GQRHAAELAATGWTTVIGGGPGTGKTTTVARVLALLMGQP-GARPRVAMAAP 219 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPE-DASTLHRLLGAQPG-SQRLRHHAGNPLH 262 TGKAAARL ++ L D +P ASTLHRLLG PG SQR RH N L Sbjct: 220 TGKAAARLQAAVQAQAVALSPADRHD--LPTLTASTLHRLLGWLPGRSQRFRHDRDNRLP 277 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 DV+VVDE SM+ L MM+RL++A+ AR+I +GD DQLASVEAGAVL D+ A G T Sbjct: 278 FDVVVVDETSMVSLTMMARLLEAVRPDARLILVGDPDQLASVEAGAVLADLVA----GLT 333 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDS-------------------LCLLQKSYRFGS 363 A A + + T G+ TE+A+ + + LL +++RFG Sbjct: 334 AVPAAPPATGSAT----GSATESAAGSAAGPGAVPPGPPAIAPARADAVALLDRTWRFGG 389 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA-------LAGYG 416 D I +LAAA+ GD A V + D+ L + ED + G Sbjct: 390 D--IAELAAAVRAGDADAALAVLARPGADVA---LIAPEDTAGAGAAVDAAVRPDVVGTA 444 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW 476 + E ++ + +++LCA R GP GV RIE ++ + + PH W Sbjct: 445 AAVRAAADAGEAQEALRRLDGHRVLCAHRSGPRGVTQWTYRIENWLAAEDLLP--PHRLW 502 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 Y GRPV++ ND L LFNGD+G+A+ G RV F+ G I P RL + +T AM Sbjct: 503 YPGRPVLVTANDYTLRLFNGDVGVAVLTGGQLRVSFSQ-HGRIVDYAPGRLADVQTVHAM 561 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 TVH+SQGS+FD ++LP +P+ TREL+YTA+TRA+ R+ L E Sbjct: 562 TVHRSQGSQFDRVTVVLPEADSPLCTRELLYTALTRAQTRVRLIGTE 608 >UniRef50_D2U880 Probable exodeoxyribonuclease v, alpha subunit protein n=1 Tax=Xanthomonas albilineans RepID=D2U880_XANAL Length = 647 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 178/424 (41%), Positives = 228/424 (53%), Gaps = 38/424 (8%) Query: 198 RIRLAAPTGKAAARLTESLGKALRQL---PLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 RI LAAPTG+AA R+ ESL A+ + + +P ASTLHRLLG S R R Sbjct: 214 RIALAAPTGRAAERMAESLRAAVAHACADGVDPALAEALPASASTLHRLLGVIRESPRFR 273 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 H NPL +V+VVDEASM+DLP+M +L++A+ D A++I LGD DQL SVEAG VL I Sbjct: 274 HDPDNPLPFEVIVVDEASMVDLPLMCKLVEAVADGAQLILLGDADQLPSVEAGDVLAAIL 333 Query: 315 AYANAG--FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 A G A L L G + T++ L L +SYR D + LA Sbjct: 334 QAAGPGDALQPADAHALRPLLGH---SAVATQSGGLIGHRVQLLRSYRQAQDFTLAPLAE 390 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGE-----------DYIAMLEEALAGYGRYLDL 421 A+ G+ D +LL+ GE D + +AL + R L Sbjct: 391 AVRTGE------------ADTTMQLLRKGELAGVHFHDGVDDPLVAGGDALFAHWRALG- 437 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR--WYEG 479 A P + A +LL A+R GP G LN RIEQ + HR S W+ G Sbjct: 438 --EAANPSEALHAAARLRLLTAVRAGPQGAHTLNARIEQRLAGPTSGHRRLGSATPWFHG 495 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRV-WFA-MPDGNIKSVQPSRLPEHETTWAMT 537 R ++I N GLFNGD+GI L QGT V WF+ DG+++ P+ LP HE+ +AMT Sbjct: 496 RLLLIVENSYRHGLFNGDVGICLRDAQGTLVAWFSGAGDGHVRGFHPAALPAHESAFAMT 555 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 VHK+QGSEFD L LPS+ V++RELVYT +TRARR L L A E +L AA+A R R Sbjct: 556 VHKAQGSEFDTVWLQLPSRDARVISRELVYTGLTRARRALHLAASEPLLRAALARRAARI 615 Query: 598 SGLA 601 SGLA Sbjct: 616 SGLA 619 >UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Actinomycetales RepID=C1RHS1_9CELL Length = 1794 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 312/599 (52%), Gaps = 38/599 (6%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN-------NEASHPLLATCVSEIGELQNW 81 G++ P V LAAAL G VC+ L+ + ++ PL A + + W Sbjct: 1203 GEDDPTVHLAAALAVRAVRAGSVCVDLADAPSLVAEGSPDDPDAPLPAGTLP-WPDTAAW 1261 Query: 82 EECLLASQAVSRG-DEPT--PMILCGDRLYLNRMWCNERTVARFFN-EVNHAIEVDEALL 137 + S V+ G D P P+ R+YL+R W +E+ V R + + ++VD+ L Sbjct: 1262 TAAVRGSGMVADGVDGPADRPVRWVDGRVYLDRYWRDEQVVRRDVDARLTSLLDVDDDAL 1321 Query: 138 AQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 + + FP + + Q+VAAA A R++V++GGPGTGKTTTVA+L+A L +A G Sbjct: 1322 RRAVHARFPRAQDAR-QRVAAATAAVSRLTVLTGGPGTGKTTTVARLVAVLRDVA-GPGL 1379 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLP------LTDEQKKRIPEDASTLHRLLGAQPGSQ 251 RI LAAPTGKAA RL E++ L +L P AST+HRLLG +P S Sbjct: 1380 RIALAAPTGKAATRLQEAVNAELARLDDAAVGGTVAAPGAARPLTASTIHRLLGWRPSST 1439 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 R H + L DV+V+DEASM+ LP+++R++DAL AR++ +GD DQLASVE GAVLG Sbjct: 1440 RFAHDHAHRLPHDVVVLDEASMVSLPLLARVLDALRPDARLVLVGDPDQLASVEVGAVLG 1499 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL------LQKSYRFGSDS 365 D+ A + +L+ L VP GT T A RD+ L L ++RFG + Sbjct: 1500 DLVARPT--RSGPLPARLAALLPDDVP-GTATSADDTRDAAALHGGVVRLVVTHRFGHE- 1555 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTD---IEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 + +LA A+ RGD A + + +E ED + L ++ G L Sbjct: 1556 -LAELADAVRRGDADATLALLRAGGAHASLVEPAAEVPTEDEVPGLRGDVSATGARLVAA 1614 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK-RKIHRHPHSRWYEGRP 481 + ++A ++LL A R GP GVA ++++++ + P S GRP Sbjct: 1615 ARAGDTAGALEALGVHRLLLAHRRGPAGVARWAALAQRWVEKTVGDLQPGPLSL---GRP 1671 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 +++ ND GL NGDIG+ + G G V + V+P RLP ET AMTVH++ Sbjct: 1672 LLVTVNDRTTGLSNGDIGVLVSDGAGGVVAAFGESHAPRLVRPHRLPAVETVHAMTVHRA 1731 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 QGS+F ++LP +P++TREL+YTAVTRA+ + + + A+ R SGL Sbjct: 1732 QGSQFTFVTVLLPPASSPLLTRELLYTAVTRAQEHVRVVGSAEAVRRAVERPVRRASGL 1790 >UniRef50_P96919 Exodeoxyribonuclease V alpha chain n=27 Tax=Actinomycetales RepID=EX5A_MYCTU Length = 575 Score = 237 bits (604), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 193/511 (37%), Positives = 281/511 (54%), Gaps = 55/511 (10%) Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLA 138 +W + AS ++ +P + L DRL YL+R W E V ++ + Sbjct: 86 DWLAAVRASPLLA---DPPVLHLYDDRLLYLDRYWREEEQVC---ADLLALLTSRRPAGV 139 Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--GE- 195 L +LFP + Q+ AA +AL++ ++V++GGPGTGKTTTVA+LLA + + A+ GE Sbjct: 140 PDLRRLFPTG--FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELAGEP 197 Query: 196 RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE-DASTLHRLLGAQPGSQRLR 254 R RI LAAPTGKAAARL E++ + + +L TD + R+ + A TLHRLLGA+PG+ R R Sbjct: 198 RPRIALAAPTGKAAARLAEAVRREMAKLDATD--RARLGDLHAVTLHRLLGAKPGA-RFR 254 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 N L +V+VVDE SM+ L +M+RL +A+ AR+I +GD DQLASVEAGAVL D+ Sbjct: 255 QDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLADLV 314 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL--LQKSYRFGSDSGIGQLAA 372 GF S+RD + L+ S+RFG IG LA Sbjct: 315 D----GF-------------------------SVRDDALVAQLRTSHRFGK--VIGTLAE 343 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 AI GD AV + + IE ED L L + L D+ + Sbjct: 344 AIRAGDGDAVLGLLRSGEERIE---FVDDEDPAPRLRAVLVPHALRLREAALLGASDVAL 400 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 +E++LLCA R+GP GV N R++ ++ ++ + P + WY GRP+++ ND L Sbjct: 401 ATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEE--TGQPPWTPWYAGRPLLVTANDYGLR 458 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 ++NGD G+ L G R + G + V RL + ET AMT+HKSQGS+ D ++ Sbjct: 459 VYNGDTGVVLAGPTGLRAVISGASGPL-DVATGRLGDVETMHAMTIHKSQGSQVDEVTVL 517 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 +P + + ++TREL+YTAVTRA+R++ + E Sbjct: 518 MPQEDSRLLTRELLYTAVTRAKRKVRVVGSE 548 >UniRef50_C4GL20 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GL20_9NEIS Length = 567 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 191/518 (36%), Positives = 265/518 (51%), Gaps = 38/518 (7%) Query: 94 GDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN-HAIEVDEALLAQTLDKLFPVSDEIN 152 D +P++L G RL++ + W E+ +A ++ H E LA+ L F D Sbjct: 70 SDASSPVVLHGRRLFIAKYWHLEKQLAAEIQRLSAHTPRQPEKPLAELLANWF-ADDTSR 128 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q+ AAA+AL + +ISGGPGTGKTTTVAKLLA L + R L APTGKAAARL Sbjct: 129 DQRAAAALALLKNFVLISGGPGTGKTTTVAKLLALLHRQ---PAPRTALVAPTGKAAARL 185 Query: 213 TESLGKALRQLPLTDEQKKRIPEDAS--TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 TESL +A +P D + +R + T+HRLLG +P + +HA NPL LD +++DE Sbjct: 186 TESLHRASAAIPDLDAEAQRYLASLTGQTVHRLLGLKPPQMQPEYHAHNPLPLDCVLIDE 245 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 ASM+D ++ +L+ ALP H RVI LGD DQL SV AGAVL + N E L Sbjct: 246 ASMMDNHLLYQLLAALPSHCRVILLGDADQLPSVGAGAVLDALS--HNHQMQPETTTALR 303 Query: 331 RLTG--THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 +L H P +L + L S+RF + SGIG LA A+ +G +A + + Sbjct: 304 QLLPDVEHFP--------TLAEQHARLTISHRFHAQSGIGNLARAVQQGSASAWHAIAEH 355 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 L + A++ + + Y ++A + AF E L L Sbjct: 356 -----PNELFAQPRNLAALVAQLYQHHTAYWQAIRAGN----LAAAFAEQSRLIVLTALR 406 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRG 505 +N +QQ H P S WY G+ +MI RN + L+NGDIGI + + G Sbjct: 407 HDAEHINNLYRTLLQQHG--HTRPQSPWYAGQIIMITRNAPSQQLYNGDIGIIMQPENDG 464 Query: 506 QGTRVWFAMPDGN---IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 R F N +S+ SRLPEHET +A+T HKSQGSE++ P+Q + Sbjct: 465 NDLRACFPSESANGSGYRSIPLSRLPEHETAYAITTHKSQGSEYEQVWFAAPAQAP--YS 522 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 R L+YTA+TRA+++ + DE AA A R S L Sbjct: 523 RALLYTAITRAKQQFVYWGDEAGFQAACAHNEHRNSAL 560 >UniRef50_D0L8X2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Corynebacterineae RepID=D0L8X2_GORB4 Length = 641 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 193/588 (32%), Positives = 294/588 (50%), Gaps = 63/588 (10%) Query: 49 GHVCLPLSRL-------ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT-PM 100 G CL L R+ + + P A +SE+ C L V G P P+ Sbjct: 71 GSTCLALDRIGDIPGLPDQPDLVLPAPAELLSEL------RRCPLV---VGTGAGPLRPL 121 Query: 101 ILCGDR----LYLNRMWCNERTVARFFN-EVNHAIEVDEALLAQTLDKLF---PVSDEIN 152 +L G LYL + + E T+ + +VD L +D +F S+ ++ Sbjct: 122 MLMGSDDGPLLYLQKYFRQEETIRTVLAARAATSPQVDPDRLRSAIDTVFGDVTSSETVD 181 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q++AAAV +R +V++GGPGTGKT TVA++LA L Q+ G R+ L APTG+AAA+L Sbjct: 182 LQRLAAAVVASRWTTVLAGGPGTGKTYTVARILAVL-QIVHGGSLRVGLCAPTGRAAAQL 240 Query: 213 TESL--GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 S+ G + P + A T+H LLG PGS R G+ L DV+VVDE Sbjct: 241 QASVSPGGSAGLDPTLITGAGAL--HAVTVHSLLGWYPGSNP-RFGRGHTLPHDVIVVDE 297 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN------AGFTAE 324 SM+ + MSR++DA ARVIF+GD QLASV+AGAVL D+ + AG +A Sbjct: 298 TSMLSMTAMSRVLDAARPDARVIFVGDPHQLASVDAGAVLADLVERTDTDPGPAAGESAH 357 Query: 325 RARQLS-------RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 + L R++ + G EAA + + L++ YRFG A Sbjct: 358 ASIALQAAGIGPERVSAEAIGPG---EAARISRGVITLRREYRFGGGIAAVAAAVNAGDA 414 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 + + + D +DIE D I + +GR L + ++A + Sbjct: 415 TRV-IDLLTDPDVSDIE----LIAPDNIDATRPDVTAWGRELRTAALACDAHAAVEALDS 469 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +++LCA REG +GV G + R+ +++ H W+ G+P+++ ND FNGD Sbjct: 470 HRVLCAHREGYWGVRGWSRRVAEWLG-----HDADRPGWFAGQPILVTANDRQTRTFNGD 524 Query: 498 IGIAL-DRGQGT----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 G+ + D G RV F G ++ ++ ++L E T +AMT+H+SQGS+FD ++ Sbjct: 525 TGVIIRDPHSGDPDDLRVAFRR-GGEVRLLRRTQLAEISTVYAMTIHRSQGSQFDRVTVV 583 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 LP + ++TREL+YTA+TRAR + + A ++ AA+ R +R SGL Sbjct: 584 LPPSGSELLTRELLYTAITRARTAVRVVAAPDVVRAAVERRVQRASGL 631 >UniRef50_UPI0001AEC2FF exodeoxyribonuclease V, alpha subunit n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC2FF Length = 735 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 196/591 (33%), Positives = 281/591 (47%), Gaps = 95/591 (16%) Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVNHAIEV---DEA--LLAQTLDKLFPV--SDEIN 152 + +LY R + E+ VAR N V A DEA + Q +FP +D + Sbjct: 141 FVYSNGKLYSRRYYEFEQEVAR--NVVKRAALTPLSDEASEKVKQLWPAIFPTETTDRQD 198 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 WQ++A A +L +R VI+GGPGTGKT TV +LL AL Q D E +I LAAPTGKA R+ Sbjct: 199 WQQIAVAKSLMQRFCVINGGPGTGKTYTVLRLLLAL-QACD-ENLKIVLAAPTGKAQQRM 256 Query: 213 TESLGKALRQL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 TES+ ++ L L D +P DA TLHRLLG + + + N L DVL+VDE Sbjct: 257 TESIMNSIDGLRGKLDDAVLNNVPTDAVTLHRLLGLREHGVSTKFNQHNQLAADVLIVDE 316 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF--TAERARQ 328 ASM+DL +M+R++ ALPDHAR+ F+GD DQL +VE G VL + + A F A Sbjct: 317 ASMVDLALMTRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSTEAASFDENANVPNG 376 Query: 329 LSRLTGTH-------VPAGTGTEAASLRDSLCLL-----QKSY--------RFGSDSGIG 368 + L VP+ A+L L LL KSY RF + Sbjct: 377 TNSLNSNDNAFSLGGVPSLMRQHIATLCPHLPLLPVDEQAKSYVATLQAPQRFKGQ--VA 434 Query: 369 QLAAAINRGDKTAVKTVFQQDFTD----------IEKRL-------LQSG-----EDYIA 406 ++A AI RGD + +D I+ L LQSG E ++ Sbjct: 435 KVATAIQRGDASGALAAITDKASDNDETAGLNSNIDSTLVSKTASRLQSGVHLWPEHQVS 494 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 + +L + A + + + N + L +R+G GV GLN + F K Sbjct: 495 GRDLHQLAKESFLPIFDAGSAEE-ALNRLNVVRWLTPVRKGGMGVEGLNNLV--FDAIKH 551 Query: 467 KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWF------AMPDGN- 518 KI R +Y+G+P+MI +N L NG++G+ +G WF + +G+ Sbjct: 552 KI-RKREGHFYQGQPIMIVKNHHPQRLSNGEVGVIWPDSKGKLYAWFYQDSQASGQNGSS 610 Query: 519 --------------------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS--- 555 ++S+ SR+P+ ET +AMT+HKSQGSEF+ LILP Sbjct: 611 QKASANAGDSADKTLAQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNQVVLILPKPDS 670 Query: 556 -QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 + + R LVYT +TRA+ + +D S + +R SG++ S Sbjct: 671 EKAANLFHRGLVYTGLTRAKDGCLIISDTATFSHMVQRVDKRYSGMSEAIS 721 >UniRef50_B5JHU9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHU9_9BACT Length = 564 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 183/539 (33%), Positives = 277/539 (51%), Gaps = 59/539 (10%) Query: 77 ELQNWEECLLASQAVSRGDEPT---PMILC-GDRLYLNRMWCNERTVARFFNEVNHAIEV 132 +L +WE+ +LA+ V+R + P++LC G LYL + + E+++A+ Sbjct: 75 DLSHWEK-ILANSPVARSETDAGCKPLVLCSGTALYLEKYYAFEQSLAK----------- 122 Query: 133 DEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 L+AQ + D A A R+ VI+GGPGTGKTT + L L+ Sbjct: 123 ---LIAQRCEP-----DSTEEIAEPAERAAKRKFFVITGGPGTGKTTLALRYLNTLLDKW 174 Query: 193 DGERC-RIRLAAPTGKAAARLTESLGKALRQLPL-TDEQKKRIPEDASTLHRLLGAQPGS 250 + R R APTGKAAARL ES+ + +L L +D ++ + T+HRLLGA P Sbjct: 175 ELSRPPRFAAIAPTGKAAARLAESIASGVARLELASDREEALLGIPCLTIHRLLGALPHR 234 Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 R ++ +PL D LV+DE+SMIDLP+M RL +ALP +V+ LGD+DQL+SV+ G+VL Sbjct: 235 TSFRKNSRHPLRFDTLVIDESSMIDLPLMLRLFEALPSDCQVLLLGDKDQLSSVDVGSVL 294 Query: 311 GDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 D+ A + E + L S+ L K+YRF DSGI Q Sbjct: 295 ADML------------------------AASELEGSPLSSSVLRLTKTYRFSEDSGIYQA 330 Query: 371 AAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPD 429 GD + D E L+ +D + + AL+ + RY + + P+ Sbjct: 331 CQLARDGDSEGFSEMLDSGREDFEFHALR--DDAKRIPKAALSRSFLRYKGIANS-TTPE 387 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS-RWYEGRPVMIARND 488 + A NE L R G FG N +E+ ++Q++ + P S + G P+++ ND Sbjct: 388 EGLLALNEGITLTPTRRGAFGSLEFNRLVERMIRQEQNL--DPLSTQSIHGAPIIVLEND 445 Query: 489 SALGLFNGDIGIA-LDRGQGTRV-WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 L L+NGD+G+ +D G +F DG + + S LP HE+ +A+T+HKSQGSEF Sbjct: 446 YELELYNGDLGLVWIDEISGIAFAFFGGADGVTRKFRLSELPRHESAFALTIHKSQGSEF 505 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 + + +TRELVYTA +RA+ RL ++A++ LS+AI + R + LA L + Sbjct: 506 LETVCLFAPEADRNLTRELVYTAFSRAKERLVVFAEKTTLSSAIGRQAFRATRLAELLA 564 >UniRef50_C8PVE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVE9_9GAMM Length = 653 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 192/639 (30%), Positives = 304/639 (47%), Gaps = 115/639 (17%) Query: 31 EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECL-LASQ 89 E P + L++ EGH ++ +E S L+A + NW + + Sbjct: 58 EKPKILQIFDELNNQLSEGHTVYEMTVNSADEKS--LIAALTTN-----NWASVIGVKED 110 Query: 90 AVSRGDEPTPMIL---------CGDR-----LYLNRMWCNERTVARFFNEVNH-AIEVDE 134 + D TP+IL G+ ++L+R W E+++A+ ++ H + Sbjct: 111 ELYNHDTNTPIILQKLNQAADGVGETQVNYIVWLHRQWHAEQSLAKQLMKIAHRKVAAFS 170 Query: 135 ALLA-QTLDK-LFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 + A Q +D L P + Q++A + +S+I GGPGTGKT TVAKL+ L + Sbjct: 171 GISASQDIDNGLAPNA----MQQLAIEKSSQHALSIIIGGPGTGKTFTVAKLVTTLQKEH 226 Query: 193 DGERCR--------IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 + +R + I L APTGKAA R+ +SL +L Q L DE+ ++A TLHRLL Sbjct: 227 EHKRKQDPNLPPLSITLTAPTGKAAQRMQQSLRISL-QKSLQDEEITL--DNAKTLHRLL 283 Query: 245 GAQPGSQRL-RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 G GS R+HA NPL D+++VDEASM+ L + S+L+DA+ R+I LGD +QLA+ Sbjct: 284 GI--GSDGTPRYHAKNPLPDDLIIVDEASMLGLELASQLVDAIKPTGRLILLGDANQLAA 341 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V+AG+VL D+CA L+ + L +S RF S Sbjct: 342 VDAGSVLSDLCA-----------------------------VTRLQPYITELTESKRFDS 372 Query: 364 DSGIGQLAAAINRG-----------------DKTAVKTVFQQDFTDIEKRLLQSGE---- 402 +S +GQ A AI + D A+K ++ D+ + Q+ Sbjct: 373 NSVVGQFALAIQQNLPAPKKIKLIQRLLQPIDLQAIKPSQSENPPDLAGKTQQTANIPFY 432 Query: 403 ------DYIAMLEEALAGYGRYLDLLQA-RAEPDLIIQA---------FNEYQLLCALRE 446 +A+ + Y + L+Q ++P I A F+ Y++LCA + Sbjct: 433 PIDASSSLLAVFNQLAKPYHPFFALMQQWYSQPVNIFAADNRKGLFEVFDSYRILCAGHQ 492 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRG 505 G G +N+++ + KI R + +Y G P++I ND LGLFNGDI I L +G Sbjct: 493 GQLGTQSINQKMSLAFTEFSKITR-TKAYFYHGLPIIIQNNDYQLGLFNGDIAICLLYQG 551 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 Q +A + +Q + +AMT+HKSQGSEF A+ + T ++++ L Sbjct: 552 Q----LYACFAEKVIPIQRLSRESCDYAYAMTIHKSQGSEFHTVAICIDKAHTRLLSQAL 607 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +YTAVTR++ LS+Y+ + A+ + R++GL F Sbjct: 608 IYTAVTRSKSALSIYSAKENFELAVTQKAVRQTGLQLQF 646 >UniRef50_C0DUX7 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DUX7_EIKCO Length = 588 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 199/538 (36%), Positives = 282/538 (52%), Gaps = 32/538 (5%) Query: 79 QNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA-IEVDE-AL 136 Q E A+ V G TP++L G RL+ R++ ER+VA + H + + E A Sbjct: 71 QEAEALRQAAPVVGDGGAFTPLVLRGRRLFSGRLFALERSVAAELQRIAHNRVRLPENAG 130 Query: 137 LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-E 195 L Q L FP + N Q++AAA+A+ + + +++GGPGTGKTTTVAKLLA L AD E Sbjct: 131 LRQRLRDWFPDAGH-NGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALLC--ADAVE 187 Query: 196 RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ--KKRIPEDASTLHRLLGAQPGSQRL 253 RI L APTGKAAA +T SL +AL + EQ + + T+HRLL P Sbjct: 188 MPRIALTAPTGKAAAHMTRSLHRALSSFKVGSEQVLQHLTVLEGQTVHRLLKLNPVVGYS 247 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + + PL D++V DEASM+DLP++ +L+ A+P+H R+I LGD +QL V GAVL + Sbjct: 248 KFNREQPLPFDIVVADEASMLDLPLLHQLLCAIPEHGRLILLGDENQLPPVGIGAVL-PV 306 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 A TA+ A QL+ VP L ++ L+ S+RF G+G LA A Sbjct: 307 LAQPTV-LTAKEAAQLAEWLPEGVPFEVRDNPPPLAGNVARLEYSHRFDPQRGVGALAQA 365 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 + G+ A + F + FTD L + E A+ Y Y + + +P Sbjct: 366 VVNGEAAAAEAAFAR-FTD---DLFRLPETPAALARHFTKQYEAYWQAVNS-GDPAACFS 420 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI----HRHPHSRWYEGRPVMIARNDS 489 A + +L A R + +F ++ RK+ R W+ G+ +M+A ND Sbjct: 421 AQQQLVVLAARRS----------QAAEFNREYRKLLAAQGRAAEQGWFAGQVLMVAENDY 470 Query: 490 ALGLFNGDIGIALDRGQGTRVWFAMPD-GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 A+ +FNGDIGI L G G +F PD G ++V SRLP H+T +AMTVHKSQGSE+ Sbjct: 471 AVNVFNGDIGIVLPHGDGLAAFF--PDAGGFRAVSLSRLPAHDTAFAMTVHKSQGSEYQE 528 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 L+ + + R L+YTA+TRARRR L AA+ + RR+GL S Sbjct: 529 VWLLGDEADSALFDRTLLYTAITRARRRFGYAGQMSALIAAVQRKNHRRTGLGEALQS 586 >UniRef50_D0LWH5 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWH5_HALO1 Length = 749 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 182/481 (37%), Positives = 238/481 (49%), Gaps = 38/481 (7%) Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 +SDE Q A A +R VISGGPGTGKT V +L L ++ + + LAAPTG Sbjct: 264 LSDE---QAAAVRAATRQRFCVISGGPGTGKTAIVVTILRTLARLGESPESAL-LAAPTG 319 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDAS---TLHRLLGAQPGSQRLRHHAGNPLHL 263 KAA R+ S+ AL +P D +++ E AS TLHRLLG P R R H NPL Sbjct: 320 KAANRMGSSIRSALLAVPDPDPVDRQLLERASEPQTLHRLLGYVPVLDRFRQHENNPLRA 379 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 ++VDEASMID +M RL+ A+P R++ LGD DQL SV+AGAVL D+ A A G Sbjct: 380 RTVIVDEASMIDAELMERLLRAVPSETRLVLLGDADQLPSVDAGAVLRDLVA-AGTGDDG 438 Query: 324 ERARQLSRLTGTHV--PAGT---GTEAASLRDSLCLLQKSYRFGSD---SGIGQL----- 370 AR+L+ V PAG G A R L R + GI L Sbjct: 439 GFARRLTHSYRMDVRDPAGRAILGAAQAMNRGETALALPIRRAAKELQWHGIELLDTVGA 498 Query: 371 AAAINRGDKTAVKTVFQQDFTD--IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP 428 A A DF D +KR+ E A L + + R+ D Sbjct: 499 TGATEGTTAPAADIAAVNDFVDHWYDKRIASDRE--FARL--STKTFQRHDDAFTPEDAA 554 Query: 429 DL--IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIAR 486 DL ++ + +LL R G +N R+ + + + P +Y G PVM+ R Sbjct: 555 DLRALMSIYERSRLLTVTRRYDTGAEAINRRLHRRVITAASVDYGPD--FYPGEPVMMRR 612 Query: 487 NDSALGLFNGDIGIAL---DRGQGTRVWFAMPDGN---IKSVQPSRLPEHETTWAMTVHK 540 ND GLFNGD G+ + + G+ R A G + S+ R+ E +AMTVHK Sbjct: 613 NDYERGLFNGDQGVVVRVSENGEPQRFRLAFARGEEFAVFSLDALRM-HVELAFAMTVHK 671 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEF AL+LP + P+ TRE++YT VTRARR + L +L AIA R ER SGL Sbjct: 672 SQGSEFSEVALVLPLEAIPLATREMLYTGVTRARRAVVLVGAPALLRTAIAQRGERFSGL 731 Query: 601 A 601 A Sbjct: 732 A 732 >UniRef50_Q3BM41 Exodeoxyribonuclease V alpha chain n=8 Tax=Xanthomonas RepID=Q3BM41_XANC5 Length = 791 Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 163/431 (37%), Positives = 217/431 (50%), Gaps = 60/431 (13%) Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 +P ASTLHRLLG P S H+A NPL D++VVDEASM+DLP+M +L+DA+ D ++ Sbjct: 338 LPSGASTLHRLLGVIPDSPHFHHNADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQL 397 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAG--FTAERARQLSRLTGT----HVPAGT-GTEA 345 I LGD DQL SVEAG VL I A G E A+ L L G+ PA T T + Sbjct: 398 ILLGDADQLPSVEAGDVLAAILQAAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRS 457 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSGEDY 404 L L + YR D + LA AI GD TA+ + + + + GED Sbjct: 458 GGLDGHRVHLLRGYRQAQDFALAPLADAIRAGDADTALALLRSGELPGVH--FHEDGEDP 515 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 +A+ +AL + R L Q +P ++ +LL A+R GP G GLN RIEQ + Sbjct: 516 LALGRDALLAHWRALANAQ---DPAAALRDAGRLRLLTAVRAGPQGARGLNARIEQLLAD 572 Query: 465 KRKIHRH--PHSRWYEGRPVMIARNDSALGLFNGDIGIAL-------------------- 502 R S W++GR ++I N GLFNGD+GI L Sbjct: 573 TGSGARRLGGASPWFQGRLLLITENSYRHGLFNGDVGICLRSDAGPSPGQGDASAVTARG 632 Query: 503 -----------------------DRGQGTRV-WF-AMPDGNIKSVQPSRLPEHETTWAMT 537 R QG V WF DG ++ P+ LP HE+ +AMT Sbjct: 633 HAAPSSRPGHAGDSARHDAPATDRRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMT 692 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 VHK+QGSEFD L LP++ V++REL+YT +TRARR L L A E ++ AA+A R Sbjct: 693 VHKAQGSEFDEVWLQLPTRDARVLSRELLYTGITRARRALHLAASEAVMRAALARHAARI 752 Query: 598 SGLAALFSSRE 608 SGLA +++ Sbjct: 753 SGLAWRLGAKD 763 >UniRef50_D0W4K0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4K0_NEICI Length = 593 Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 193/546 (35%), Positives = 278/546 (50%), Gaps = 40/546 (7%) Query: 78 LQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEV--DEA 135 L+ E L++ G+ +P+IL G++L+L RMW E +A + A D A Sbjct: 62 LKKEEASFLSTLKPVVGESASPLILEGEKLFLGRMWQLEYDLAAEIKRLAAAGTSVPDTA 121 Query: 136 LLAQTLDKLFP-VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 Q L K F V E Q+ AAA+AL + VI+GGPGTGKTTTVAKLLA LI DG Sbjct: 122 GARQNLAKWFQGVGSE--GQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA-LICSGDG 178 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE-DASTLHRLLGAQPGSQRL 253 I LAAPTGKAAA + +L +A+ D ++ + + + T+HRLL +P + Sbjct: 179 NLPHIALAAPTGKAAAHMARALHRAINSFDAPDNVRRHLLKLEGQTVHRLLKLRPPKMQP 238 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + PL DVL++DEASM+D +M +L+ A+ ARVI LGD +QL SV GAVL + Sbjct: 239 AFNPVYPLPFDVLIIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGVGAVLSVL 298 Query: 314 CAYANAGFTAERARQLSRLTGTH-VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 G E +L H P ++ L + L S+RFG +SGIG L+ Sbjct: 299 SQKTLLG--GEIYNKLVEYLPEHGFP--LCSDVPVLAQNTARLSFSHRFGDNSGIGCLSR 354 Query: 373 AINRGDKT---AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD 429 ++ GD+ A+ + F ++ E RL + L GY + +D + Sbjct: 355 SVVSGDEAQAWALFSRFDKELEHSECRL----NAQVERLYRTHKGYWQAVD----EGNIE 406 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDS 489 ++ +L A R+ NE ++++KR I H ++ G P+MI +ND Sbjct: 407 SAYTGISDVVVLAAWRQ---DADNFNEAYCNYVRRKRNIPE--HQAYFAGEPIMIRQNDY 461 Query: 490 ALGLFNGDIGIALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 ALGLFNGDIG+ +D R +F DG K V S LP+ E +AMTVHKSQGSE+ Sbjct: 462 ALGLFNGDIGLIMDNVQRSGSLSAYFPDTDG-FKKVAVSCLPDFEPAFAMTVHKSQGSEY 520 Query: 547 DHAALILPSQRTPV--------VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 L+ PS + ++REL+YTA+TRA+ + + E A AT R++ Sbjct: 521 REVWLLPPSAASSNEEDDALSGLSRELLYTAITRAKEKFVFFGGEETFRQAAATVKVRQT 580 Query: 599 GLAALF 604 L + Sbjct: 581 ALGNML 586 >UniRef50_UPI0000E0F58B exodeoxyribonuclease V, alpha subunit n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F58B Length = 674 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 150/535 (28%), Positives = 264/535 (49%), Gaps = 41/535 (7%) Query: 100 MILCGDRLYLNRMWCNERTVARFFNE-VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAA 158 +++ RL+ +++ E+ +++ ++ + + E + ++L+P + WQ +A+ Sbjct: 131 LVIDKQRLFSRKVYEYEQFISQQISQKITTSNERLNPNVKTVFEQLYPSPIKNIWQAIAS 190 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 AL + +I+GGPGTGKT TV + L + AD +R L APTGKAA R++ES+ Sbjct: 191 VTALNQSFFIINGGPGTGKTYTVIRTLLLHLAQAD-KRLNFALCAPTGKAAQRMSESIVN 249 Query: 219 ALRQLP---LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 ++ L + E IP AST+HRLLG ++H GNPL DVLV+DEASM+D Sbjct: 250 EVQHLSRQGIAPELLANIPTTASTVHRLLGLGYHRNYAKYHQGNPLPHDVLVIDEASMLD 309 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR-------- 327 +M R++ A+ R++ +GD QL SVE+G +L D+ F++ + Sbjct: 310 TRLMFRILSAVKPSTRILLIGDTAQLPSVESGNILKDVMPVHVNQFSSTMMQWVESVSSE 369 Query: 328 -QLSRLTGTHVPAGTGTE----AASLRDSL-------CLLQKSYRFGSDSGIGQLAAAIN 375 LT G ++ AA+L ++ L Y+ + I L I Sbjct: 370 LSSQYLTSCAEIPGENSQWNDYAATLLTNMRSTHHVNELANAIYQNNVNGAITALDNVIT 429 Query: 376 RGDKTAVK--------TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 R ++ K +++ D D E+++ Q+ I + +A Y L + E Sbjct: 430 RWSTSSPKLSNLASSTLLYRPDEVD-EQQVKQNFNALIKTMSDA------YFKPLLSMLE 482 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 P + ++++L +R G+ G+N+ I+Q + Y G+ ++I +N Sbjct: 483 PTDALALLRQFRILSPIRHSAMGIEGINKAIDQLLDPSTNKSADSDRHLYHGKAILITQN 542 Query: 488 DSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 D LG++NGD G+ L + Q + D ++ P R+ + ++ +AMT+HK+QGSEF Sbjct: 543 DMQLGIYNGDSGVILRNEAQQLTAYIDRGDQAPLAISPYRIAKFQSAYAMTIHKTQGSEF 602 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 D ++LPS +++EL+YT +TRA++ +++ AI T R + + Sbjct: 603 DQVLIVLPSGLIHPMSKELLYTGITRAKQYVAVTGAAPDFVKAIYTTHARHTNIV 657 >UniRef50_C8NA26 Probable exonuclease V, alpha subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA26_9GAMM Length = 606 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 189/572 (33%), Positives = 273/572 (47%), Gaps = 81/572 (14%) Query: 83 ECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLD 142 + L A+ ++ D P+ GDRL+++R + E +A E HA A T Sbjct: 50 DTLAATPLLADDDRAAPLTRRGDRLWISRNYQQEARLAAMLRERLHA--------ADTPA 101 Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 + P Q+ A +A +RR+++I+GGPGTGKT T+A+L+ A Q AD + RI LA Sbjct: 102 EPIPADGLRAEQQNAIRLARSRRLALINGGPGTGKTYTIARLIHA-EQQAD-PKIRIALA 159 Query: 203 APTGKAAARLTESLGKA-LRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPL 261 APTGKAA R+ ESL A ++ LP A TLHRLLG Q R+H L Sbjct: 160 APTGKAAKRMEESLAAAGVQDLP------------AQTLHRLLGIGTDGQ-ARYHMSRHL 206 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC---AYAN 318 D++++DEASM+ L + LI A R+I LGD DQLA+VE GA+L D+ A N Sbjct: 207 PHDLIIIDEASMLSLELAHALIAATATDTRLILLGDADQLAAVEPGAILHDLSHHPALQN 266 Query: 319 AGFTAERARQLSRLTGTHVPAGT-----GTEAASLRDSLCLLQK---------------- 357 T +++ +G A G L ++L +K Sbjct: 267 HRITLRESQRFRADSGIGQLAAILNGDDGQHGERLLEALAPYKKEQLPLFCRESDGLRLQ 326 Query: 358 ---------SYRFGSDSGIGQLAAA-INRGDKTAVKTVF---QQDFTDIEK-----RLLQ 399 S+ F +G G+ +R D T T F Q TD R Sbjct: 327 TAGAKTSADSHPFPCVAGEGRGGGVKTSRSDNTVTATSFDAGQPPVTDKNAGHKNLRSQN 386 Query: 400 SGEDYI-------AMLEEAL-AGYGRYLDLLQ-ARAEPDLIIQAFNEYQLLCALREGPFG 450 S E I A L AL A Y YL+ LQ A A P ++ +++Y++LCA G G Sbjct: 387 SDEKTIHWYPTPDANLYRALIAPYQPYLEKLQDAAANPQELLNTYDQYRILCAGHHGALG 446 Query: 451 VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV 510 +N + Q Q+ + P +Y G P+MI ND L+NGD GI + G ++ Sbjct: 447 TRRINAALRQLHQRAQGAD--PSLAYYHGLPLMILENDHRQQLYNGDTGICFEDDNGLQL 504 Query: 511 WFAMPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 + + + P+ L + +A+++HKSQGSE+ H AL L +++REL+YT Sbjct: 505 HLPGHEPVPLARLNPATLTD---AYALSIHKSQGSEYPHVALALDEHAERLLSRELLYTG 561 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGLA 601 +TR++ RL +YA L A AT T R +GLA Sbjct: 562 ITRSKGRLDIYASADALKNAAATPTRRHTGLA 593 >UniRef50_A6W6P3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W6P3_KINRD Length = 634 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 189/512 (36%), Positives = 281/512 (54%), Gaps = 36/512 (7%) Query: 99 PMILCGDRLYLNRMWCNERTVARFFNEVNHAIE-VDEALLAQTLDKLFP--VSDEINWQK 155 P+ L GD L+L+R W E VA + A+ D A + LD+L+P ++D+ Q+ Sbjct: 145 PLHLVGDGLWLDRYWRQELAVAEDLRARSAAVAGYDPAAVDAVLDRLWPGGLADD---QR 201 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 AAAV L +SV+ GGPGTGKTTTVA+LLAA+ ++ G R+ LAAPTGKAAARLTE+ Sbjct: 202 TAAAVCLAHGVSVLGGGPGTGKTTTVARLLAAVHALSPGP-PRVALAAPTGKAAARLTEA 260 Query: 216 LGKALRQLPLTDEQKKRI-PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 + A TD++++ + ASTLHRLLG +PGS R R+ A + L DV++VDEASM+ Sbjct: 261 VVSAAGTDGFTDDERRFLRSTTASTLHRLLGIRPGSVRARYDAEHRLPHDVVIVDEASMV 320 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG 334 L +M+RL+ AL AR++ +GD QLASVE GAVL D+ A A Sbjct: 321 GLGVMARLLAALRPGARLVLVGDPQQLASVEVGAVLADLVAPAERAAP------------ 368 Query: 335 THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ-----D 389 A ++ + LL++++RF GI +AAA+ RG V + + + Sbjct: 369 --------GAAPAVPHGVALLRRTHRFADRGGIAAIAAAVRRGAAEEVVDLLRAGGPDVE 420 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 F ++ L +G A+ E L ++ +A + A + ++ LCA R G Sbjct: 421 FLEVPDEELVAGAALEAVRAEVLRRSAAVVEAARAGDA-AAALTALDAHRTLCAHRRGTR 479 Query: 450 GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR 509 GV+ + +++ + + R Y G PV++ ND +G+FNGD G+ LDR GT Sbjct: 480 GVSHWSALAQRWAVEDLGVQPRTDGR-YVGLPVIVTANDPGVGVFNGDTGVVLDR-DGTL 537 Query: 510 VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 V V +RL E AMTVH+SQGS+FD ++ +R+P+ TRE+ YTA Sbjct: 538 VAAIARGAGPLLVPLARLAAVEPVHAMTVHRSQGSQFDVVTVLAAPERSPLATREMFYTA 597 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGLA 601 +TRA+ R+ + ++AA++ R +GLA Sbjct: 598 LTRAKVRVRVVGSPEAVAAAVSRPLARATGLA 629 >UniRef50_Q1BXL0 Exodeoxyribonuclease V, beta subunit n=111 Tax=Proteobacteria RepID=Q1BXL0_BURCA Length = 2007 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 121/262 (46%), Positives = 160/262 (61%), Gaps = 7/262 (2%) Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 L D + L+++YRFG DS IG+L+ AI RGD A D + +G+ + Sbjct: 1731 LADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALEALPADDSAAASFHDDAGDTLASS 1790 Query: 408 LEEALAG-YGRYLDLLQ---ARAEPDLI--IQAFNEYQLLCALREGPFGVAGLNERIEQF 461 E LA +G YLD L+ A PD + A N +++LCA R G G +N + Sbjct: 1791 TVERLARRFGVYLDALRDALAAPAPDPLPLFDALNRFRILCATRSGSRGAEHVNALVAAH 1850 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIK 520 ++ ++ + W+ GRP+MI RND ALGLFNGDIGIAL G RVWF DG + Sbjct: 1851 VRHAARVPLAVGAHWFTGRPIMITRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGTAR 1910 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 +V P+ LP HET +A+TVHKSQGSEFD AAL+LP+ V+TRELVYTAVTRAR R+ + Sbjct: 1911 AVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAVTRARTRVQVI 1970 Query: 581 ADERILSAAIATRTERRSGLAA 602 R+L+ A+ATRT+R SGLAA Sbjct: 1971 GPRRVLAQAVATRTQRDSGLAA 1992 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 121/283 (42%), Positives = 160/283 (56%), Gaps = 29/283 (10%) Query: 43 SHDAGEGHVCLPLSRLEN------NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE 96 S GHVC+ L L +E L A+ V G L +RGDE Sbjct: 1296 SRATASGHVCVALGALAQRYEAPLDEVRAALAASGVVAFGTL-------------ARGDE 1342 Query: 97 PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL----LAQTLDKLF-PVSDEI 151 ++ D LYL+R + ER +A DE L L +L + F P + E+ Sbjct: 1343 RPLIVDRLDHLYLSRYFDYERRLADALVAQAGVAAPDEGLSPDRLRDSLARYFGPATGEV 1402 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ+VAA VALT R++++SGGPGTGKTTTV +LA L+ G RI LAAPTGKAA R Sbjct: 1403 DWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPG--LRIALAAPTGKAAQR 1460 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E+L LP E R+P+ + TLHRLLG G+ RHH NPL D++VVDEA Sbjct: 1461 MQEALHARAGDLP--PELAARLPDTSYTLHRLLGGG-GAAGFRHHRDNPLPYDLIVVDEA 1517 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 SMID+ + + L+DAL AR++ LGD+DQLA+VEAGAV ++ Sbjct: 1518 SMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAVFAELS 1560 >UniRef50_A2WB98 ATP-dependent exoDNAse (Exonuclease V) n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WB98_9BURK Length = 732 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 121/264 (45%), Positives = 160/264 (60%), Gaps = 7/264 (2%) Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY- 404 A L D + L+++YRFG DS IG+L+ AI RGD A D +G+ Sbjct: 454 APLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQAALDALPADAAAAASFYDDAGDTLA 513 Query: 405 IAMLEEALAGYGRYLDLLQ---ARAEPDLI--IQAFNEYQLLCALREGPFGVAGLNERIE 459 +A +E + +G YLD L A PD + A N +++LCA R G G +N + Sbjct: 514 LATVERLASRFGAYLDALHDALAAPAPDPLPLFDALNRFRILCATRSGARGAEHVNALVA 573 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGN 518 +++ ++ + W+ GRPVM+ RND ALGLFNGDIGIAL G RVWF DG Sbjct: 574 AHVRRAARLPLAVGAHWFTGRPVMVTRNDYALGLFNGDIGIALPDAHGVLRVWFRRADGT 633 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 ++V P+ LP HET +A+TVHKSQGSEFD AAL+LP+ V+TRELVYTAVTRAR R+ Sbjct: 634 ARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAVTRARVRVQ 693 Query: 579 LYADERILSAAIATRTERRSGLAA 602 R+L+ A+ATRT+R SGLAA Sbjct: 694 AIGARRVLAQAVATRTQRDSGLAA 717 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 96/188 (51%), Positives = 128/188 (68%), Gaps = 8/188 (4%) Query: 137 LAQTLDKLF-PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE 195 L +L++ F PV+ E++WQ+VAA VALT R++++SGGPGTGKTTTV +LA L+ Sbjct: 81 LRDSLERYFGPVTGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAQPS- 139 Query: 196 RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRH 255 RI LAAPTGKAA R+ E+L LP E R+P+ + TLHRLLG G+ RH Sbjct: 140 -LRIALAAPTGKAAQRMQEALHARAGDLP--PELAARLPDTSYTLHRLLGGG-GAAGFRH 195 Query: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 H +PL D++VVDEASMID+ + + L+DAL AR++ LGD+DQLA+VEAGAV ++ A Sbjct: 196 HRDDPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAVFAELSA 255 Query: 316 YANAGFTA 323 FTA Sbjct: 256 RPT--FTA 261 >UniRef50_A3ETY4 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY4_9BACT Length = 575 Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 175/572 (30%), Positives = 275/572 (48%), Gaps = 65/572 (11%) Query: 35 VTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVS-R 93 V L A+LS +GHV + L +++ HP + + + + + WE L A V+ Sbjct: 48 VLLMVAILSRARRDGHVLIDLDEVQH----HPWVLSWKNRLPDPSRWEAILDAHPLVTGP 103 Query: 94 GDEPTPMILCGDRLYLNRMWCNERTVARFFNE--VNHAIEVDEALLAQTLDKLFPVSDEI 151 G+ P+P + LY + ++ E +AR E A E D A+ + L S + Sbjct: 104 GEGPSPFLYANRCLYFSALYRQESFLARSIRERLSLGAREPD----ARDQEILRLASGGV 159 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 ++ AL R +++GGPGTGKT T A++L + + +A PTGKAA R Sbjct: 160 EDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKILR--PEAHLVVATPTGKAARR 217 Query: 212 LTESLGKALRQLPLTDEQKKRIPE-DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 E+L +PE D TLHRLLG PG PL D+++VDE Sbjct: 218 FREALS---------------LPEVDVLTLHRLLGISPGGAS--PGEDRPLVQDLVLVDE 260 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR-QL 329 SM+DL +M+RL AL VI +GD DQL+SV G+V GD+ A A ++ R ++ Sbjct: 261 CSMVDLSLMARLFRALSPETSVILVGDPDQLSSVGPGSVFGDL---ALAMSVEQKTRPEI 317 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 SR S +L ++YR S G+LA + +GD V + Sbjct: 318 SR-------------------SFQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEILASG 358 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 R ++ I + + L +L ++++R+ + + ++ LL A+REGP Sbjct: 359 EKSGPIRWIEPRTGAIREIGKTLIEA--WLPVVESRSAEE-AWEKLGQFALLGAVREGPL 415 Query: 450 GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI-ALDRGQGT 508 G +N + + + R R+ PV++ N G NGD G+ ++ Sbjct: 416 GTRTVNRLLRNHFENRSGCTR----RFV---PVIVTENSVESGFMNGDPGLLEMEGNTAI 468 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 R +F P ++ P +P E +A+TVHKSQGSEFDH ++L S+ +++R L+YT Sbjct: 469 RAFFQGPGQTMRVASPLLMPAWEEAFALTVHKSQGSEFDHVTVLLGSESNALLSRSLLYT 528 Query: 569 AVTRARRRLSLYADERILSAAIATRTERRSGL 600 AVTRAR+RL++YA +L A++ R +GL Sbjct: 529 AVTRARKRLTVYASRGVLREALSNAGGRSTGL 560 >UniRef50_C6HV36 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV36_9BACT Length = 578 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 174/533 (32%), Positives = 261/533 (48%), Gaps = 74/533 (13%) Query: 79 QNWEECLLAS--QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL 136 + WE LL+S V R + P P+++ G LYL R W E VAR + A E +E++ Sbjct: 94 REWE-ALLSSLPSVVGRPEAPAPLVVEGGGLYLYRYWRAEVRVARLLAD-RLAGEREESV 151 Query: 137 LAQT-----LDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 T L+++FP + + + AA AL R+ V++GGPGTGKT T A+LL ++ Sbjct: 152 GEGTSRERLLEEIFPEAGGAS--RTAALAALGSRLLVLTGGPGTGKTWTAARLLLLFRRL 209 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 G R+ AAPTGKAAAR+ E+L + L + + TLHRLLGA Sbjct: 210 VPG--IRVVSAAPTGKAAARMGEALAEVL---------PPELAVPSMTLHRLLGAS---- 254 Query: 252 RLRHHA---GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 LR A G L D++++DE SM+DL +M L+ AL R++ +GD+DQL+ V AGA Sbjct: 255 -LRGIAPRRGEFLPWDLVLLDELSMVDLLLMESLLSALSPRTRLVLVGDQDQLSPVGAGA 313 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 V+GD+C +A E+ VP G L +L ++YR + Sbjct: 314 VMGDLCRALSA---QEKG----------VPRG-----------LVVLSRNYRQRESGLLQ 349 Query: 369 QLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP 428 + + + GD +F++ D+ + G ++E G+ L + Sbjct: 350 EFSRKVAEGDGEGALRLFERGDPDLVFAPVAEGWPENLLVE----GF----SPLATSSSD 401 Query: 429 DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND 488 ++ + L R+GP G + +E+ + R SR + P MI +N Sbjct: 402 GEALERLGGFMALSPFRDGPMGALRGSRHLERVFSRLRG------SRGFRA-PAMILQNS 454 Query: 489 SALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRL-PEHETTWAMTVHKSQGSEFD 547 GL NGD+GI G R+ FA P ++ P R+ P ET + MTVHKSQGSEFD Sbjct: 455 YDTGLMNGDLGIL----SGERLVFAAPGRPEPAILPLRMAPPWETAFVMTVHKSQGSEFD 510 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 L+L + P++TR L+YTA TRA++ L ++A + + R SGL Sbjct: 511 RVCLLLGGELHPLLTRRLLYTAATRAKKGLVVWASPESFLSMVRLSPARSSGL 563 >UniRef50_UPI00016A6244 exodeoxyribonuclease V, beta subunit n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A6244 Length = 660 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 122/287 (42%), Positives = 163/287 (56%), Gaps = 7/287 (2%) Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 A+R ++ + V A T A L D + L+++YRFG DS IG+L+ AI RGD Sbjct: 359 AQRVAAMTPVAPEDVEAAEATTPAPLADCVVWLERNYRFGLDSPIGRLSLAIRRGDVQEA 418 Query: 383 KTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG-YGRYLDLLQARAEPDLI-----IQAFN 436 +G+ A E LA + YLD L+ A N Sbjct: 419 LDALPASDAAAASFHEDAGDTLAATTVERLARRFSAYLDALRDALAAAAPDPLPLFDALN 478 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 +++LCA R G G +N + +++ + + W+ GRP+M+ RND ALGLFNG Sbjct: 479 RFRILCATRGGARGAEHVNALVAAHVRRAAHVPLAVGAHWFTGRPIMVTRNDYALGLFNG 538 Query: 497 DIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 DIGIAL QG RVWF DG ++V P+ LP HET +A+TVHKSQGSEFD AAL+LP+ Sbjct: 539 DIGIALPDAQGVLRVWFKRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPA 598 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 V+TRELVYTAVTRAR R+ + R+L+ AIATRT+R SGL+A Sbjct: 599 TFGRVLTRELVYTAVTRARTRVQVIGGRRLLAQAIATRTQRDSGLSA 645 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 110/231 (47%), Positives = 147/231 (63%), Gaps = 10/231 (4%) Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEA----LLAQTLDKLF 145 A+ RG+E ++ DRLYL R + ER +A A+ D+A +L + L + F Sbjct: 23 ALERGEERPLIVDRHDRLYLARYFAYERRLAEALVAQAGAVAADDAPPPDVLRERLARYF 82 Query: 146 -PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 P + E +WQ+VAA VALT R++++SGGPGTGKTTTV +LA L+ G RI LAAP Sbjct: 83 GPATGETDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPG--LRIALAAP 140 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TGKAA R+ E+L LP E R+P + TLHRLLG G+ RHH NPL D Sbjct: 141 TGKAAQRMQEALHARAGDLP--PELAARLPNTSYTLHRLLGGG-GAAGFRHHRDNPLPYD 197 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 ++VVDEASMID+ + + L+DAL AR++ LGD+DQLA+VEAGAV ++ A Sbjct: 198 LIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAGAVFAELSA 248 >UniRef50_D1R7X6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X6_9CHLA Length = 597 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 165/520 (31%), Positives = 248/520 (47%), Gaps = 75/520 (14%) Query: 108 YLNRMWCNE----RTVARFFNEVNHAIEVD--EALLAQTLD--KLFPVSDEINWQKVAAA 159 YL + W E V + N I+ D + ++ +D KL P Q A Sbjct: 114 YLQKHWQQETLWINCVKKVLMPANQWIDSDAIQTEVSHLIDNQKLLPE------QAQAIL 167 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER---CRIRLAAPTGKAAARLTESL 216 A + + +I GGPGTGKT T +L+ L E+ +I LAAPTGKAA+ L SL Sbjct: 168 KAAQQNLLLICGGPGTGKTYTAGQLIKTLWNHLPPEKQKTFQIALAAPTGKAASNLQNSL 227 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 KA LP IP+ A TLH LL P + + + +PL D++++DE+SMIDL Sbjct: 228 AKATENLP-----NWEIPK-AKTLHALLNIIP-YKYAKKRSFSPLAADLILIDESSMIDL 280 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTH 336 PMM +L +L A++I LGD QL +V G+ D+ Y +E A Q+ L Sbjct: 281 PMMIQLFSSLKPSAKLILLGDHHQLPAVGIGSPFRDLRTYMQN--KSEYADQVVEL---- 334 Query: 337 VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ-DFTDIEK 395 LR L GI A + GD + T+ + IEK Sbjct: 335 --------KTCLRAEL------------KGILDFAETVKSGDASGALTLLENAHLQGIEK 374 Query: 396 RLL---QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 L S ++ E A + + D +Q R+ P+ ++ FN ++L LR+GPFG+ Sbjct: 375 VFLDEKMSLSNFYTFFLEKTAPFFSF-DNIQNRS-PEELLTVFNRVRILSPLRKGPFGIE 432 Query: 453 GLNE-RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA--LDRGQGTR 509 LN +E+FMQ + P+++ +ND LFNG+IG+ L + +G + Sbjct: 433 TLNHLLLERFMQNHSTLSPF-------VAPILLTKNDHKSELFNGEIGVLVRLQKNEGLQ 485 Query: 510 V--WFAMP----DGN--IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 + P DG+ I+ + LP+ E + ++VHKSQGSEFD L+LPS + V Sbjct: 486 PGDYALFPCKAKDGSETIRRIPALLLPQFEYAYCLSVHKSQGSEFDQIFLMLPS-GSEVF 544 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 RE++YTAVTRA++ L ++ D + + ++R S Sbjct: 545 GREILYTAVTRAKKYLQIWTDPNTFTMTLKQTSKRLSSFV 584 >UniRef50_Q140W3 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Burkholderia RepID=Q140W3_BURXL Length = 704 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/344 (39%), Positives = 190/344 (55%), Gaps = 28/344 (8%) Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLG------DICAYANAG--FTAERARQLSR 331 +RL ALP +R LG+ + ++ A G D+ AYA++ F A +LS Sbjct: 358 TRLTQALPHASRS--LGEEQAGSFPQSNAPHGFEARPDDLFAYADSPEVFNEPLAGELSE 415 Query: 332 LTGTHVPAGTGTEAAS-LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD- 389 G G A + L D + L+++YRFG +S IG+L+ AI G +A V + D Sbjct: 416 --GAASSPGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSSAALDVLRIDP 473 Query: 390 --------FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI--IQAFNEYQ 439 + D L E +A L A Y L A PD + A N ++ Sbjct: 474 AESCAAALYEDTHATL---AERTVARLAAGFAPYADALAAALAADTPDPLPLFDALNRFR 530 Query: 440 LLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG 499 +LCA R GP GV +N + +++ + ++W+ GRPVM+ RND ALGLFNGDIG Sbjct: 531 ILCATRSGPRGVDQVNAAMAAQVRRSAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIG 590 Query: 500 IALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 IAL G RV F DG +++V P+ LP H+T +A+TVHKSQGSEF+HA L+LPS + Sbjct: 591 IALPGASGALRVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLMLPSAFS 650 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 V++RELVYTA+TRAR R+ + +L+ AIAT T+R SGLAA Sbjct: 651 RVLSRELVYTAITRARERVEVVGARAVLAQAIATPTQRDSGLAA 694 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 132/314 (42%), Positives = 176/314 (56%), Gaps = 45/314 (14%) Query: 43 SHDAGEGHVCLPLSRLENN-EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT--- 98 S EGHVC+PL+ L EAS +E+ L AS S G + Sbjct: 64 SRATAEGHVCVPLALLARRFEASG-------AEV------RAALFASGMASDGSQSAAAL 110 Query: 99 -PMILCGD-RLYLNRMWCNERTVARFFNEVNHA---------IEVDEALLAQTLDKLF-- 145 P+++ G RLYL R + ER +AR V HA + AQTL + Sbjct: 111 RPLVVDGQGRLYLARYYDYERRLARAL--VAHAGAGVGTRAAPGAEAGGNAQTLHERLLR 168 Query: 146 ----PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM-ADGERCRIR 200 P +E++WQ+VAA +AL+ +++++SGGPGTGKTTTV +LA L+ AD RI Sbjct: 169 YFGTPKDNEVDWQRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDARAD---LRIA 225 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 L APTGKAA R+ E+L LP E R+P+ + TLHRLLG+ PG R RHH NP Sbjct: 226 LGAPTGKAAQRMQEALLARAGDLP--PELAARLPQTSYTLHRLLGSGPGG-RFRHHRDNP 282 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 L DV+V+DEASMID+ M + L+DAL R++ LGD+DQLA+VEAGAV ++ A Sbjct: 283 LPYDVVVIDEASMIDVAMAAHLLDALAPQTRLVMLGDKDQLAAVEAGAVFAELS--ARPA 340 Query: 321 FTAERARQLSRLTG 334 FT E R+L+ G Sbjct: 341 FTQEGVRRLAEALG 354 >UniRef50_B4RLU6 RecD n=26 Tax=Neisseria RepID=B4RLU6_NEIG2 Length = 592 Score = 198 bits (503), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 195/579 (33%), Positives = 277/579 (47%), Gaps = 75/579 (12%) Query: 67 LLATCVSEIGE-LQNWEECL---------LASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 +LA C + + LQN + L++ A G P+IL G RL+L RMW E Sbjct: 41 VLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRLFLGRMWQLE 100 Query: 117 RTVARFFNEVNHA--IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 +A + A D A Q L K F + Q+ AAA+AL + VI+GGPG Sbjct: 101 YDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGS-EGQRDAAALALLQFFMVITGGPG 159 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 TGKTTTVAKLLA LI + I LAAPTGKAAA + +L +A+ + ++ + Sbjct: 160 TGKTTTVAKLLA-LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLL 218 Query: 235 E-DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 + + T+HRLL P + PL DVL+VDEASM+D +M +L+ A+ ARVI Sbjct: 219 KLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVLIVDEASMLDTALMLQLLKAVKTGARVI 278 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS--LRDS 351 LGD +QL SV GAVL + T RL G G A L + Sbjct: 279 LLGDENQLPSVGIGAVLSVLSQK-----TVLDGETHQRLAGFLPEHGFSVSANPPVLAQN 333 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE----------KRLLQSG 401 L S+RFG +SGIG LA A GD+ A +F + ++E +RL ++ Sbjct: 334 TAHLSFSHRFGDNSGIGCLARAAVSGDEGAW-ALFDRFPDELEHSECSPNARVERLYRAH 392 Query: 402 EDYI-----AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE 456 + Y +E A AG + L R + + +A+ Y Sbjct: 393 KAYWQAVKDGNIEAAYAGISDIVVLAAWRQDAEDFNEAYCSY------------------ 434 Query: 457 RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWFA 513 +RK++ H ++ G P+MI +ND AL LFNGDIG+ ++ R +FA Sbjct: 435 -------VRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFA 487 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT--------PVVTREL 565 DG K V S LPE E +AMTVHKSQGSE+ L+ PS +++EL Sbjct: 488 DADG-FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKEL 546 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +YTA+TRAR + + ++ A+ T R++ L ++ Sbjct: 547 LYTAITRAREKFVFFGGKKTFCQAVNTVKVRQTALGSML 585 >UniRef50_Q2SUN7 Exodeoxyribonuclease V, alpha subunit n=27 Tax=Proteobacteria RepID=Q2SUN7_BURTA Length = 899 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 115/264 (43%), Positives = 156/264 (59%), Gaps = 11/264 (4%) Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSG----- 401 L D + L+++YRFG DS IG+L+ AI RG + A+ + D D R G Sbjct: 629 LTDCVIWLERNYRFGLDSPIGRLSLAIRRGAVQDALDALSTAD--DAAARWCDDGGATLS 686 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLI--IQAFNEYQLLCALREGPFGVAGLNERIE 459 + L AGY L A +PD + N +++LCA R G G +N + Sbjct: 687 AATVGQLARGFAGYAAALRDALATPDPDPLPLFDVLNRFRVLCATRTGARGADEVNALVA 746 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGN 518 +++ ++ + W+ GRPVM+ RND ALGLFNGDIGIAL +G RVWF DG Sbjct: 747 AEVRRAVRVPLALGAHWFAGRPVMVTRNDYALGLFNGDIGIALPGARGALRVWFRGADGR 806 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 ++V P+ LP H+T +A+TVHKSQGSEFD AAL+LP+ V++RELVYTA+TRAR R+ Sbjct: 807 ARAVSPAALPPHDTAFALTVHKSQGSEFDDAALVLPASFNRVLSRELVYTAITRARSRVR 866 Query: 579 LYADERILSAAIATRTERRSGLAA 602 + +L+ AIATRT R SGLAA Sbjct: 867 VIGARAVLALAIATRTARDSGLAA 890 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 114/284 (40%), Positives = 157/284 (55%), Gaps = 36/284 (12%) Query: 49 GHVCLPLSRLENN------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL 102 GHVC+ L L + L A+ V+ A +++RG E P+++ Sbjct: 67 GHVCVSLRALAQRYDEPFADVRDALAASGVT-------------AFDSIARGAE-RPLVV 112 Query: 103 CGD-RLYLNRMWCNERTVARFF--------NEVNHAIEVDEALLAQTLDKLFPVSDE--I 151 D RLYL R + E +A + A E+ L + L + F E + Sbjct: 113 DRDGRLYLARYFEYETRLASALVARARCGGAQAGDAGELMPEALGERLVRYFGPQKERGV 172 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ+VAA VALT R++++SGGPGTGKTTTV ++A L+ RI LAAPTGKAA R Sbjct: 173 DWQRVAALVALTGRVTIVSGGPGTGKTTTVVGVIACLLDAH--PDLRIALAAPTGKAAQR 230 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E+L LP E R+P + TLHRLLG R HH NPL D++VVDEA Sbjct: 231 MQEALHARAGSLPA--ELAARLPRTSYTLHRLLGGG-PGGRFAHHRDNPLPYDLVVVDEA 287 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 SMID+ + + L+DAL +AR++ LGD+DQLA+VEAGAV ++ A Sbjct: 288 SMIDVALAAHLLDALAPNARLVLLGDKDQLAAVEAGAVFAELSA 331 >UniRef50_Q6MFB5 Putative exodeoxyribonuclease V alpha chain recD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB5_PARUW Length = 622 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 178/631 (28%), Positives = 290/631 (45%), Gaps = 94/631 (14%) Query: 9 EAVEHKQLRPLDVQFALTVAGDE--HPAVTLAAALLSHDAGEGHVCLPL---------SR 57 + + QL L+ L + D+ + + L L A EGH+C+ + + Sbjct: 39 QLLSKNQLSYLNYLLTLEIIKDQWINQNLVLFICHLLMAAQEGHLCVEIRNQTLFPTVKQ 98 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLL------------ASQAVSRGDEP-TPMILCG 104 L NEA+ PL EL+N +L A ++ P TP+ + Sbjct: 99 LWTNEAAAPLSNE------ELENLTHSILQGSQNIPVNFVTAMDSLENSVYPNTPICMHK 152 Query: 105 DRLYLNRMWCNERTVARFFN---EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA 161 YL + W E + N + + +E++ +L Q L++ + Q A Sbjct: 153 GNFYLQKHWVLETVFLKNLNKHLQTSPTLELNRVVLEQHLNECVLKKKLLLEQAQAILTG 212 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAAL---IQMADGERCRIRLAAPTGKAAARLTESLGK 218 +S+I+GGPGTGKT T + + ++ + C+I LAAPTGKAAA L +SL Sbjct: 213 CLSSLSLITGGPGTGKTFTAGRFIQIYWDSLKECQKKNCQIALAAPTGKAAANLQKSLSL 272 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 QL K P A TLH+LLG + R R+ +G L D+++VDE+SMID+ M Sbjct: 273 VTAQL------KDFPPLKAKTLHQLLGI---NNRSRNESGIRLAADLIIVDESSMIDVKM 323 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 M+ L +AL +R+I LGD+ QL SVEAG++ D L++L T +P Sbjct: 324 MAYLFEALKKGSRLILLGDQHQLPSVEAGSLFAD----------------LTKLK-TKIP 366 Query: 339 AGTGTE-AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 TE LR L S I LA IN+G ++ + RL Sbjct: 367 C---TELKVCLRTEL------------SSIVSLAHYINQGKGQETLSMLNETQIAGISRL 411 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNER 457 S + A +E + + L + I++ FN ++L +R+G FGV +N+ Sbjct: 412 NLSPDRREAQ-KEFVQHVMNHFPLSIKVHDNQKILELFNTIRILSPMRKGYFGVDSINQL 470 Query: 458 IEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-------GQGTRV 510 I + Q + S + P++I ND LFNG+ G+ + + + + Sbjct: 471 IWNHVSQIKL------SPGWLAIPIIIVTNDYKQNLFNGETGVLIRKLPLKSITSEDYAL 524 Query: 511 WFAMPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 + + +G N++ + LP++E + ++VHKSQGSEF+ L+LP + + RE+ YT Sbjct: 525 FPSKDEGENMRCLPACLLPKYELAYCLSVHKSQGSEFERVILMLP-EGSECFGREVFYTG 583 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGL 600 VTRAR+ + ++ + + I+ ++ R SG+ Sbjct: 584 VTRARKHIEVWGTDFTIEKTISQQSFRLSGI 614 >UniRef50_D1ULB4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1ULB4_9BURK Length = 790 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 113/263 (42%), Positives = 160/263 (60%), Gaps = 8/263 (3%) Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA- 406 L D + L+++YRFG +S IG+L+ AI G +A V D T L +A Sbjct: 519 LADCVVWLERNYRFGLESPIGRLSLAIRHGAASAALEVLVADATRHAAELHDDAHPTLAE 578 Query: 407 -MLEEALAGYGRYLDLLQARA-----EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 +E AG+ Y + L A +P + N +++LCA R GP GV +N + Sbjct: 579 RTVERLAAGFAPYANALAAALAEATPDPTPLFDGLNRFRVLCATRSGPRGVDQVNALMAA 638 Query: 461 FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNI 519 +++ + ++W+ GRPVM+ RND ALGLFNGDIGIAL G RV+F DG++ Sbjct: 639 QVRRAAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIALPGAGGVLRVYFRTGDGSL 698 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 ++V P+ LP H+T +A+TVHKSQGSEF+HA L+LPS + V++RELVYTA+TRAR R+ + Sbjct: 699 RAVSPAALPPHDTAFALTVHKSQGSEFEHAVLVLPSTFSRVLSRELVYTAITRARERVEV 758 Query: 580 YADERILSAAIATRTERRSGLAA 602 +L+ AIAT T+R SGLAA Sbjct: 759 IGARAVLAQAIATPTQRDSGLAA 781 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/168 (55%), Positives = 121/168 (72%), Gaps = 7/168 (4%) Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM-ADGERCRIRLAAPTGK 207 DE++WQ+VAA VAL+ R++++SGGPGTGKTTTV +LA L+ AD RI LAAPTGK Sbjct: 222 DEVDWQRVAAVVALSGRLTIVSGGPGTGKTTTVVGVLACLLDARAD---LRIALAAPTGK 278 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 AA R+ E+L LP E R+P+ + TLHRLLG+ PG R RHH NPL DV+V Sbjct: 279 AAQRMQEALLARAGDLP--PELAARLPQTSYTLHRLLGSGPGG-RFRHHRDNPLPYDVVV 335 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 +DEASMID+ M + L+DA+ H R++ LGD+DQLA+VEAGAV ++ A Sbjct: 336 IDEASMIDVAMAAHLLDAIAPHTRLVMLGDKDQLAAVEAGAVFAELSA 383 >UniRef50_A2C8A4 Possible exodeoxyribonuclease V 67 kD polypeptide n=2 Tax=Prochlorococcus marinus RepID=A2C8A4_PROM3 Length = 576 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 164/519 (31%), Positives = 248/519 (47%), Gaps = 77/519 (14%) Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVA 157 +PM+L G++L R + V + +N + V + T + D +N ++ A Sbjct: 87 SPMVLNGNQLSWRRWHGDMDAVIKEL--INRSNVVQATSICTTPSHHPALLDGLNPEQQA 144 Query: 158 AAVALTRR-ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A A+ + ++SGGPGTGKT+T+ ++LA + + G RI LAAPTGKAA RL E++ Sbjct: 145 AVEAIDNHGVVLLSGGPGTGKTSTIVQMLARAVTLRPG--LRIGLAAPTGKAARRLEEAV 202 Query: 217 GKALRQLPLTDEQK-KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 K L +P T Q +P STLHR L A+PG H +PL LD+LV+DE SM++ Sbjct: 203 RKGLEAIPPTQRQALTSLP--CSTLHRWLQARPGG--FGRHQQHPLMLDLLVIDEMSMVE 258 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL-----GDICAYANAGFTAERARQLS 330 L +M L+ ALP ++++ +GD DQL V +GAV DI N G A QL Sbjct: 259 LSLMQALLSALPIDSQLVMIGDPDQLPPVGSGAVWHQLQQADIRQQFNHG--AIHLHQLY 316 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 R G+ A+L LC D G+ ++ K+A Q + Sbjct: 317 RNRGS---------LATLSRVLC----------DQGLSAFWQQLSLLPKSANVEQHQCNL 357 Query: 391 TDIEKRLLQSGEDYI---------AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 + + + L+Q +++ MLE Y + + ++ + +L Sbjct: 358 SSMPRFLVQHLQEHSRTLQRLTAELMLELPDDAYTSTMLNTNLAVAAESLLDSLERLMVL 417 Query: 442 CALREGPFGV-----AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 C R G +GV A L + +E + RW G PVM N + LGL NG Sbjct: 418 CPKRRGFWGVDDVHRALLGQSLEAGVM-----------RWPLGTPVMCCENQAELGLANG 466 Query: 497 DIGIALDRGQGTRVWFAM--PDGNIKS--VQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 D+G+ + +G R+ F + G + + + P+RL E A+TVHKSQGSE DH L+ Sbjct: 467 DVGLVVGQGDNLRILFRVISEQGGLTTRFIHPARLSVVEPALALTVHKSQGSEADHVILL 526 Query: 553 LPSQRTPVVT------------RELVYTAVTRARRRLSL 579 P + T R+L+YTA+TRAR+R+ L Sbjct: 527 WPEIKAVSATSADGFESASSFERKLLYTAITRARQRVDL 565 >UniRef50_Q0IBA7 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Synechococcus RepID=Q0IBA7_SYNS3 Length = 559 Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 143/457 (31%), Positives = 227/457 (49%), Gaps = 55/457 (12%) Query: 148 SDEINWQKVAAAVALTRR-ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 +++++ ++ AA A+ R + ++SGGPGTGKT+TV +L L + R RLAAPTG Sbjct: 136 NNDLSPEQQAAVRAIDRYGVVLLSGGPGTGKTSTVLHML--LRAFEKQPKLRARLAAPTG 193 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVL 266 KAA RL + A+R P+T +P +TLHRLL A+PG H NPL LD+L Sbjct: 194 KAARRLQD----AIRSNPIT----ATLP--CTTLHRLLEARPGG--FGRHRRNPLELDLL 241 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 +VDE SM+DL + L+ ALP H ++I +GD QL + GA+ + + Sbjct: 242 IVDEMSMVDLELGRALLSALPTHCQLILVGDSAQLPPIGTGAIWQHL----------QEP 291 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 Q R + T TE R +L + R D G+ + ++ KT+ TV Sbjct: 292 NQNRRFKDGAI---TLTEVYRNRGALAQMSALLR---DQGLIPFWSQLSSLPKTSNITVS 345 Query: 387 QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL-----IIQAFNEYQLL 441 I + + + ++ L+E + G + A +PD ++ + +L Sbjct: 346 YSQTRQIPEAVHAALTRHLDHLKEKASALG-----INAHGQPDQQQAQDLLNILDTLMVL 400 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 C R GP+GV +++ + + + RW G PV+ + N LGL NGD+G+ Sbjct: 401 CPRRRGPWGVDAVHQNLLDGSEPQ---------RWPSGLPVLCSENQPELGLANGDLGVM 451 Query: 502 LDRGQGTRVWFAMPDGNIKS----VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 + G R F D + +S P+RL E A+T+HK+QG E D L+ P+ Sbjct: 452 VGEGVQQRALFLCSDPSGESRHALYHPARLRHLEPALALTIHKAQGCEMDKVLLLWPNFD 511 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 ++ L+YTA+TRA+++L L+AD + L + R+ Sbjct: 512 DRQIS-SLLYTAITRAKQQLLLFADPKALDLGRSARS 547 >UniRef50_Q05XZ5 Probable exodeoxyribonuclease V, alpha subunit RecD n=1 Tax=Synechococcus sp. RS9916 RepID=Q05XZ5_9SYNE Length = 549 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 166/522 (31%), Positives = 251/522 (48%), Gaps = 70/522 (13%) Query: 82 EEC-LLASQAVSRGDEPTPMILCGD-----RLYLNRMWCNERTVARFFNEVNHAIEVDEA 135 EEC L S V P +L G R +L+ C E+ + + A+ DE Sbjct: 77 EECGWLVSAGVLNAAPEAPFVLDGHWLRWRRWHLHLHHCLEQLLELGRTALPGALSEDEI 136 Query: 136 LLAQTLDKLFPVSDEINWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADG 194 A+T + ++ Q+ A +AL + R+ +++GGPGTGKT+TV ++LAA + Sbjct: 137 NAARTAAR----QAGLDTQQTQAVLALLQHRLVLLTGGPGTGKTSTVVQMLAAALTCNPA 192 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 +I+LAAPTGKAAARL +++ L +D +STLHRLL AQ G R R Sbjct: 193 --IQIQLAAPTGKAAARLQQAVSSGSNALG-SDAMHHLSSLPSSTLHRLLEAQ-GKNRYR 248 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + PL +D++VVDE SM+DLP+M L++ALPDHA+++ +GD DQL V GAVL ++ Sbjct: 249 RNRSLPLVVDLVVVDEVSMVDLPLMEALLEALPDHAQLLLVGDPDQLPPVGPGAVLQELS 308 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 +R +L PA LQ +YR ++ I LA + Sbjct: 309 -------QPQRRHELG-------PAAVE------------LQTTYR--NNGAIAALADQL 340 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML--------EEALAGYGRYLDLLQARA 426 + K Q D + L+ + +E L+ + L + Sbjct: 341 RQSSSGFSKAQLSQLLPDDNVQWLEVKRQGLPTRLLNDLRAHQERLSALAKALRWHDGQP 400 Query: 427 EPD---LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 PD +++ + L +R+GP+GV LN + + R+ +H W G PV+ Sbjct: 401 HPDDAAALLEQLEAWVALSPVRQGPWGVDTLNRAV--LGDRSRRSVQH----WPAGTPVL 454 Query: 484 IARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 N + GL NGDIG+ + Q TRV + + P++L E +A+TVHKSQG Sbjct: 455 NRHNRADQGLANGDIGVVVMHEQETRVLLP----GQRLLHPAQLTGAEPAFALTVHKSQG 510 Query: 544 SEFDHAALILPSQRTPVVTRE--LVYTAVTRARRRLSLYADE 583 S++ AL+LP PV ++ L YT +TRAR + L E Sbjct: 511 SQYSEVALLLP----PVRHQDPRLAYTGLTRARHNVLLITSE 548 >UniRef50_B0SIS5 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS5_LEPBA Length = 600 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 139/489 (28%), Positives = 218/489 (44%), Gaps = 75/489 (15%) Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC-RIRLAAPTGKAAARLTESLGKA 219 +T VISGGPGTGKTT V+ +L A ++ RI L APTG+A+ RLTES+ + Sbjct: 135 VITSNFRVISGGPGTGKTTVVSFILMAFDRLKLLPSMERIALVAPTGRASQRLTESIQRN 194 Query: 220 LRQL----PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 L + LT + T+H LL P + + + L D +++DE SM+D Sbjct: 195 LEKFQADPSLTSNFR------GQTIHNLLKINPTTNQAKFGEKRYLPYDFIIMDETSMVD 248 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 L +M+ A+ +I LGD +QL SV G VL D+ + LS L Sbjct: 249 LKLMNLFFSAIHFDTHIILLGDPNQLPSVGQGEVLTDLITTL-----KNKKEFLSELNSN 303 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE- 394 H +E + + ++++S+ S++ L I + D + DF I+ Sbjct: 304 H-RFSNDSEFSVFAE---IVKQSFDTNSNTKPFPLPKMITKSDLN-----LKHDFVWIQG 354 Query: 395 -KRLLQSG-----------EDYIAMLEEALAGYGRYLDLLQARA----EPD--------L 430 K+ + E + L E YL + EP+ Sbjct: 355 DKKTKSTNGNHPEIHDWNIESMVPFLWETF-----YLHTANKTSKFHWEPNALKDPKNKF 409 Query: 431 IIQAF-NEYQLLCALREGPFGVAGLNERI-----EQFMQQKRKIH----RHPHSRWYEGR 480 I ++ NEY+ L LR G FG+ + +I +Q K + H + S ++EG Sbjct: 410 IFESIVNEYRCLTILRNGYFGIEAIQGQILRYAKKQLTNPKNEFHLKYRQLSKSFYFEGM 469 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 P++I ND LFNGDIG+ + R F + D + S LP+HE + +T+HK Sbjct: 470 PIIIQSNDPMRKLFNGDIGLVVSIHSELRAVFPIED-RLYSFALDTLPDHEPAFFLTIHK 528 Query: 541 SQGSEFDHAALILPSQRT---------PVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 SQGSE+ L LP ++ R ++YTA+TRA+ R+ L D + + Sbjct: 529 SQGSEYKSILLYLPPMNVLDVDSENNLSILNRRILYTAITRAKERVILLGDFQTWEFGLQ 588 Query: 592 TRTERRSGL 600 + +R +G+ Sbjct: 589 SFRKRYTGI 597 >UniRef50_Q3B2W0 Helicase RecD/TraA n=19 Tax=Bacteria RepID=Q3B2W0_PELLD Length = 739 Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 218/455 (47%), Gaps = 75/455 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A +AL+ ++ +I+GGPG GKTT + LL+ + + ++ L APTG+AA RL+ Sbjct: 345 QREAVRLALSNKLLIITGGPGVGKTTIIRTLLS----IPEVFGLKVLLTAPTGRAAKRLS 400 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E+ G+ + T+HRLL P + + A NPL D+++VDEASM Sbjct: 401 EATGR-----------------EGRTIHRLLEFDPATFDFKRSAHNPLEADLVIVDEASM 443 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ID+ +M+RL+ A+P +A +I GD DQL V GAVL D+ + ++ RLT Sbjct: 444 IDVVLMNRLLPAIPKNAALILAGDVDQLPPVGPGAVLSDLISSGTV--------RVVRLT 495 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 A T ++Q ++R G+ + GD V++ DI Sbjct: 496 EIFRQAATS----------LIIQNAHRVNRGEGLLRHEGP-GLGDFYFVES---SSSDDI 541 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 ++L+Q ++ R + ++ Q+L + GP G Sbjct: 542 RRKLVQ---------------------IVAERIPERFGLDPLDDIQVLTPMNRGPLGAES 580 Query: 454 LNERIEQFMQ--QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI--ALDRGQGT- 508 LN +++ + ++I R + + G V+ N+ +FNGDIGI A+D +G Sbjct: 581 LNVLLQERLNGGGGKRIERFGVA-YGRGDKVIQTVNNYEKEVFNGDIGIISAIDHEEGEL 639 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 +V F DG Q L E WA+T+HKSQGSE+ + L P++ R L+YT Sbjct: 640 QVLF---DGREVRYQTGELDEMAPAWAITIHKSQGSEYPAVVIPLSMLHYPMLERNLIYT 696 Query: 569 AVTRARRRLSLYADERILSAAIA--TRTERRSGLA 601 A+TR R+ + + +E+ L A+ + R +GLA Sbjct: 697 ALTRGRKLVMVIGEEKALRLAVGKCSSKGRLTGLA 731 >UniRef50_Q6A849 Exonuclease V, alpha chain n=3 Tax=Propionibacterium acnes RepID=Q6A849_PROAC Length = 628 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 170/561 (30%), Positives = 261/561 (46%), Gaps = 86/561 (15%) Query: 81 WEECLLASQAVSRGDEPT---PMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALL 137 W L AS ++ D+P P L +YL + W E VAR D A L Sbjct: 103 WLSTLEASPVIAGRDDPLNRLPARLDDGLVYLEKYWQAEHDVAR-----------DLATL 151 Query: 138 AQTLDKLFPVSDEINWQKVAAAVALT-----------------RRISVISGGPGTGKTTT 180 A PVS + ++ A+A + R+SV++GGPGTGKTTT Sbjct: 152 AADPPSQGPVSADDVVSSISNALAASGIMLDPAQADAAIAAIMHRVSVLAGGPGTGKTTT 211 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 V LLAAL Q AD + LAAP+GKAAARL +S+ + ++P + K I DA+T+ Sbjct: 212 VCALLAAL-QQADPHLGAVALAAPSGKAAARLRDSVSQVSERMP---DDLKPIVADATTV 267 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 H LL Q + + L V+VVDEASM+ LP+ + L+ A+ R+I +GD Q Sbjct: 268 HSLLKWQGPGTSFGYDEQHKLPFGVVVVDEASMLSLPLAASLLSAIGPQTRLILVGDPGQ 327 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV+AG+VL DI + A+A +P + +L ++R Sbjct: 328 LVSVDAGSVLADIVSSADA-------------LQAQLP-------------VTILTCNHR 361 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVF------QQDFTDIEKRLLQSGEDYIAMLE----- 409 D I +L+ A+ GDK+ V D + SG I ++ Sbjct: 362 SRGD--IARLSEAVREGDKSTALDVLATAAGVTHDSPSPDSIATISGRRSITWIDADPAS 419 Query: 410 ----------EALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 E +A G + L + ++ + ++LLCA REGP+GV ++R+ Sbjct: 420 ITMADLPAVAEVIARTGARMLELAQASADAAALKLVDAHRLLCAHREGPYGVDEWSQRMV 479 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNI 519 + + RW G ++ N + LG+ NGD G+ ++ + P G Sbjct: 480 TVLSD--VLPGVGQGRWVLGETAIVTHNLAQLGVNNGDCGVIVETRPVPTIALPGPGGVP 537 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + + S +P + AMT+HK+QGS+F ++LP +P+++REL+YTA+TRAR L++ Sbjct: 538 RRLPCSLIPSLQPLQAMTIHKAQGSQFTDVTVVLPPPDSPLLSRELLYTAITRAREHLTV 597 Query: 580 YADERILSAAIATRTERRSGL 600 + AI +RRSG+ Sbjct: 598 VGTRESVERAIDRANDRRSGI 618 >UniRef50_B5IMW7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMW7_9CHRO Length = 548 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 167/517 (32%), Positives = 238/517 (46%), Gaps = 89/517 (17%) Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW-QKV 156 +P++L GDRL R + V L Q + + ++ Q+ Sbjct: 77 SPLVLDGDRLLWRRWHQQRQGVLESLGRRAGPAAAHPCSLEQARQQAAGHGEGLDAEQRR 136 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A A L + ++ GGPGTGKT+TV ++LAAL A G R++LAAPTGKAAARL ++ Sbjct: 137 AVAAVLHYGLVLLEGGPGTGKTSTVTRMLAALRAHAPG--ARMQLAAPTGKAAARLRAAI 194 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 A L L STLHRLL +Q +R H +PL LD+LV+DE SM+DL Sbjct: 195 AGAGSGLALP----------CSTLHRLLESQ--GERFARHRHHPLELDLLVIDEVSMVDL 242 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI-----------------CAYANA 319 +M ++DALP R++ +GD QL V GAVL ++ Y N Sbjct: 243 ALMGAVLDALPARCRLVLVGDAAQLPPVRPGAVLVELQSPRWRGALGGAVVELRTTYRNN 302 Query: 320 GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK 379 G A+ A QL R G E L + S+R G S + QL A N G + Sbjct: 303 GAIAQVAGQLRR---------QGAEPGELGAA-----TSWR-GLRSTLEQLPANANLGWR 347 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 A + + ++ + LE D ARA ++Q + Sbjct: 348 PASPRRLPPELLERLRQHQLQLQRLALSLEPG--------DRSAARA----LLQELDTLL 395 Query: 440 LLCALREGPFGV-----AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 +L +R G +GV A L + +EQ +Q W G PV+ RN LGL Sbjct: 396 VLSPVRRGRWGVEAVHRALLGDTVEQPIQA-----------WPIGTPVLCQRNLGDLGLA 444 Query: 495 NGDIGIALDR-----------GQGTRVWFAM-PDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 NGD+GI + G+G RV FA DG + + P++LP+ + A+TVHK+Q Sbjct: 445 NGDVGILVGAAAAAGAGRSPGGEGRRVLFAPGGDGELLWLHPAQLPDPQPALALTVHKAQ 504 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 GSE +++P P T L+YTA+TRAR++ L Sbjct: 505 GSEALEVWVLMPDSSRP--TDRLLYTALTRARQQAQL 539 >UniRef50_Q3AX67 DNA helicase/exodeoxyribonuclease V, alpha subunit n=5 Tax=Synechococcus RepID=Q3AX67_SYNS9 Length = 530 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 150/458 (32%), Positives = 221/458 (48%), Gaps = 86/458 (18%) Query: 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 +N ++ A +AL + + +ISGGPGTGKT+TV +LLA +Q+ + R+ LAAPTGKAA Sbjct: 128 LNREQRDAVLALDQASVVLISGGPGTGKTSTVVELLAR-VQLHHPD-LRMGLAAPTGKAA 185 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 RL +++ L+ LP TLHR L A G+ HA PL LD+LV+D Sbjct: 186 RRLGDAVRPRLKGLP------------CGTLHRWLEA--GAHGFARHAERPLKLDLLVID 231 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+DL +M L+ ALP R++ +GD QL V +GAV Sbjct: 232 EMSMLDLALMQALLSALPPCCRLVLVGDPAQLPPVGSGAV-------------------W 272 Query: 330 SRLTGTHVPAGTGTEAASL------RDSLCLLQKSYRFGS----DSGIGQLAAA----IN 375 RL + V GT A L R ++ L + R G G+ +L A I+ Sbjct: 273 HRLQQSDVRERFGTGAIHLKQTYRNRGAVAQLASALREGGIDAFQGGLAELDAEANVRIH 332 Query: 376 RGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAF 435 R + + ++ + +RLLQ E + E L+G +AEP ++ A Sbjct: 333 RESSRRLPPMIRRHWQGHHRRLLQLSEGLLDCSEAELSG----------QAEP--LLAAL 380 Query: 436 NEYQLLCALREGPFGVAGLNERI--EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGL 493 + +LC R GP+ + ++ + E R RW G PV+ N LGL Sbjct: 381 EQNLVLCPRRRGPWSLEDVHRSLLGEVIAADPR--------RWPSGLPVICGGNQPELGL 432 Query: 494 FNGDIGIALDRGQGTRVWF--AMPDGN--IKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 NGD+GI + G +R+ F A DG +K + P+RL E A+T+H++QGSE D Sbjct: 433 ANGDLGITVGAGDQSRLLFRVATDDGGVEVKRLHPARLRRLEPAVALTIHRAQGSEADAV 492 Query: 550 ALILPSQRTPVVTRE-------LVYTAVTRARRRLSLY 580 ++ P P+ + + L+YTA+TRAR L L Sbjct: 493 FVLWPQ---PLDSPDGSDHDCRLLYTAITRARVSLDLM 527 >UniRef50_Q6MDD6 Putative exodeoxyribonuclease V n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDD6_PARUW Length = 721 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 147/559 (26%), Positives = 249/559 (44%), Gaps = 85/559 (15%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASH-PLLATCVSEIGELQNWEECLLASQAVSRGDEPTP 99 +LS +G+GHVC P+ +H + A + + E EE ++ +Q + G + Sbjct: 219 VLSQLSGDGHVCYPVDEFLKEAETHLEVKADLIEKRLEGLQSEERIILAQLIHEGKKR-- 276 Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW---QKV 156 D +++ ++ E +AR + + + ++ + + +I QK Sbjct: 277 -----DFIWIKPLFIAETGIARELKRLKNGVSTFRSINKEKAVEWVQAQLKIELAPNQKE 331 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A A A++ ++ +I+GGPGTGK+T + A++Q+ +I LAAPTG+AA R++E Sbjct: 332 AVAKAISTKLHIITGGPGTGKST----ITNAILQITAILTQKILLAAPTGRAAKRMSEIT 387 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLL----GAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 + AST+H LL + G +R R NPL D++++DEAS Sbjct: 388 KRK-----------------ASTIHSLLEYDFKSTGGFKRNRE---NPLDCDLIIIDEAS 427 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 MID +M L+ ALPDH RVIF+GD QL SV G VL D+ Sbjct: 428 MIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMI------------------ 469 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 SL S+ L++ +R + S I A +N+G ++ DF Sbjct: 470 -------------TSLTISVTTLKEIFRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFF 516 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 IE Q E+ + + + L+ R + Q+L +++G G Sbjct: 517 IE---CQENEEVLNTI----------VKLVSQRLPNRYGFNPNQDIQVLAPMKKGLIGTE 563 Query: 453 GLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD-RGQGTRVW 511 LN+ ++ + K ++ G VM RND +FNGDIG L+ + +V Sbjct: 564 HLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDYQKEVFNGDIGYILNIDSEEQQVL 623 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 D + + L E +A++VHK QGSE + + + ++ R L+YT +T Sbjct: 624 IQFEDKEV-VYDYTDLDELILAYAISVHKFQGSECPCVVMPVHTSHFMLLHRNLLYTGIT 682 Query: 572 RARRRLSLYADERILSAAI 590 R ++ + L ++ L+ A+ Sbjct: 683 RGKKLVVLVGTKKALAIAV 701 >UniRef50_D1R7Z3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7Z3_9CHLA Length = 727 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 152/566 (26%), Positives = 258/566 (45%), Gaps = 100/566 (17%) Query: 41 LLSHDAGEGHVCLPLS----------RLENNEASHPLLATCVSEIGELQNWEECLLASQA 90 +LS A +G+VC P+ +E + S + + + E G +++++ Sbjct: 220 VLSELASDGNVCYPVDLFIEEANKVLEIEQEKISERI--SVLKEQGRVEHFK-------- 269 Query: 91 VSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA------IEVDEALLAQTLDKL 144 + EP I +L ++ E +AR + A ++VD+AL Q + Sbjct: 270 LIHAGEPLQFI------WLKPLFVAEVGIAREIQRLLSAPVVLRDVDVDKAL--QWIQAE 321 Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 + +N QK A A AL +++ +I+GGPGTGK+T + A++ + + +I LAAP Sbjct: 322 HCIDLAVN-QKEAVAQALFQKMHIITGGPGTGKST----ITKAILGITEKLTSKILLAAP 376 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG+AA R++E GK AST+H LL + + + +PL D Sbjct: 377 TGRAAKRMSEITGK-----------------KASTIHSLLEYDFKGKGFKRNRSSPLVCD 419 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 +L++DE+SMID +M L+ A+PD+ARVIF+GD +QL SV G VL D+ Sbjct: 420 LLIIDESSMIDTFLMYSLLKAIPDNARVIFVGDINQLPSVGPGNVLQDLI---------- 469 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 AS S+ L + +R + S I A INRG ++ Sbjct: 470 ---------------------ASQVVSVTTLNEIFRQAAGSFIITNAHRINRGMFPDIRN 508 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 + Q DF +E Q ED +L++ +A L+ R ++ Q+L + Sbjct: 509 LSQSDFFFVEA---QETED---VLKQIVA-------LVSQRLPKKYDFHPSDDIQVLAPM 555 Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR 504 ++G G+ LN +++ + + + VM RN+ + +FNGDIG +D Sbjct: 556 KKGNIGIDNLNAVLQETLNPNQTPLMRQGRKLMVNDKVMQIRNNYSKEVFNGDIGRIVDI 615 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 + + + S L E +A+++HK QGSE + + + ++ R Sbjct: 616 DHVEQQVVVKVEEREICYEFSELDEIVLAYAVSIHKYQGSECPCVVIPVHTSHFKLLYRN 675 Query: 565 LVYTAVTRARRRLSLYADERILSAAI 590 L+YTAVTR ++ + L ++ LS A+ Sbjct: 676 LLYTAVTRGKKLVVLVGTKKALSIAV 701 >UniRef50_Q46K41 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Prochlorococcus marinus RepID=Q46K41_PROMT Length = 573 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 142/529 (26%), Positives = 253/529 (47%), Gaps = 78/529 (14%) Query: 92 SRGDEPTPMILCGDRLYLNRMWCNE--RTVARFF---NEVNH-AIEVDEALLAQTLDKLF 145 ++GD +P++L GD + R NE T+ + +NH + E+ + A+ L+ L Sbjct: 82 TKGDN-SPIVLNGDLISWRRT-HNEIVETIQKILLRNQPINHLSKELPVRIEAKNLEHL- 138 Query: 146 PVSDEINWQKV-AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 N Q++ A + + +I ++SGGPGTGKT+T+ ++L L + I +AAP Sbjct: 139 ------NIQQIDAVNLVKSEQIILLSGGPGTGKTSTILQML--LEALTRNPTLSIAMAAP 190 Query: 205 TGKAAARLTESLGKALRQL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH 262 TGKAA +L +++ + P+ D+ IP + TLH+ L A P R ++ L Sbjct: 191 TGKAAKKLKDTIQAGIEDFDDPIKDKLS-NIP--SKTLHKWLEAGPNG--FRRNSQRLLK 245 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY-ANAGF 321 LD++V+DE SM+DL ++ L+DAL ++I +GD DQL + +G + + F Sbjct: 246 LDLIVIDEMSMVDLSTINGLLDALTKSCQIILVGDPDQLLPIGSGGIWQILQEKETKTNF 305 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 + +LT ++ G + A LR+ L D G+ +++ + + Sbjct: 306 QSNSV----KLTKSYRNKG---DIALLRNIL----------KDKGVDAFWQLLSKKEDST 348 Query: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL-------DLLQA--RAEPDLII 432 + I ++++ Y L+E Y+ +++ E + Sbjct: 349 NTLHYLSSIKSIPDPVVRTLVSYRKKLKELTENCINYIPDEAWQSSMIEVDQSVEIQKLF 408 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 + + +LC R GP+GV ++I +F+ KR + H +W E P+M N +G Sbjct: 409 KFIDNLLILCPQRYGPWGV----KKIHEFLLGKR-FEKEVH-KWGEATPIMAKSNQPEIG 462 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGN----IKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 L NGD+G+ + G+ R F + + + PSRL ++ +AMT+HK+QGSE D Sbjct: 463 LANGDVGVIIGNGEKRRFLFNVFSEEQRLVTRLINPSRLNRYDAAYAMTIHKAQGSEADQ 522 Query: 549 AALILPSQRTPVVTRE--------------LVYTAVTRARRRLSLYADE 583 L+ P+ T V+ E ++YTA+TRA+++L + ++ Sbjct: 523 VLLLWPT--TSKVSEEKTSNKFYSDDYEKRMLYTAITRAKKQLMVITNK 569 >UniRef50_B1I2W6 Helicase, RecD/TraA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2W6_DESAP Length = 688 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 212/455 (46%), Gaps = 83/455 (18%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL-IQMADGERCRIRLAAPTGKAAARL 212 Q A AL S+++GGPG GKT TV ++ A +Q G + L APTG+AA RL Sbjct: 307 QNAAVKTALESGFSILTGGPGVGKTQTVRAVIRAFELQNPWGG---VFLCAPTGRAARRL 363 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPLHLDVLVVDEA 271 +E G+ A T+H+LLG + G + R R NPL D+L++DEA Sbjct: 364 SEVTGR-----------------QAHTVHKLLGLRNGHADRNRK---NPLECDLLILDEA 403 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM L + RL++A+P++AR++F+GD DQL SV G +L D+ Sbjct: 404 SMACLVLTKRLLEAVPNNARILFVGDADQLPSVGPGNILRDLL----------------- 446 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 VP TE +R ++S I A INRG + + DF Sbjct: 447 ---DKVPTVRLTEI-------------FRQAAESQIVTNAHRINRGQMPLIDRS-KTDFI 489 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 +E+ + ED + +G G D L + Q+L +R+GP G Sbjct: 490 FLER---EDPEDIAKCVATCASGMG--YDPL--------------DVQVLSPMRKGPVGT 530 Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW 511 A LN+ I+ M R ++ ++ G V+ +N+ G+FNGDIGI V Sbjct: 531 AELNKLIQGGMSGPRV--KYGQYVFHVGDKVIHTKNNYDKGVFNGDIGIIKKIKMQHDVL 588 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 G + S L E E WA+TVHK+QGSEF + + + ++ R L+YTAVT Sbjct: 589 VQYSSGLV-SYSGDDLRELEPAWAVTVHKAQGSEFKAVIIPVTTSHYVMLHRNLIYTAVT 647 Query: 572 RARRRLSLYADERILSAAIATR--TERRSGLAALF 604 RAR ++ L ++ L+ A+ +R + L+ L Sbjct: 648 RAREKVILVGTKKALAIAVRNNKPIQRYTALSGLL 682 >UniRef50_B3EIT2 Helicase, RecD/TraA family n=13 Tax=Bacteria RepID=B3EIT2_CHLL2 Length = 740 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 210/449 (46%), Gaps = 73/449 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A A+ LT + +VI+GGPG GKTT L+ A++++ + +I L APTG+AA RL+ Sbjct: 342 QKEALALVLTNKATVITGGPGVGKTT----LVNAILRVIRKKTTKILLCAPTGRAAKRLS 397 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 ES G +A T+HRLL P S + +GNPL D++VVDE SM Sbjct: 398 ESTGM-----------------EAKTIHRLLEFDPNSGGFKRSSGNPLEADMVVVDETSM 440 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D+ +MS+L+ A+P A ++ +GD DQL SV GAVL DI A A + RLT Sbjct: 441 VDIVLMSKLLSAVPAKAALLLVGDADQLPSVGPGAVLTDII--------ASDAVPVVRLT 492 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 + +R + S I A IN G+ + ++ +D Sbjct: 493 -----------------------EIFRQAARSQIIVNAHRINNGE--IPRNAEGEELSDF 527 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 Q+ E+ + + + ++ R + Q+L + G G Sbjct: 528 YVVNSQTPENI----------HAKLMQMVTERIPARFGFHPVRDIQVLTPMNRGGLGSRA 577 Query: 454 LNERIEQFMQ--QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALDRGQGT- 508 LN +++ + + K+ R S + G V+ N+ +FNGDIG A+D + Sbjct: 578 LNAELQKALNGSAEPKVSRF-GSIFSPGDKVIQMVNNYDKEVFNGDIGAITAIDTEESEL 636 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 V F D + S L E +A ++HKSQGSE+ + L Q ++ R L+YT Sbjct: 637 TVDF---DKRPVRYEFSELDELALAYATSIHKSQGSEYLAVVIPLAMQHFTLLERNLIYT 693 Query: 569 AVTRARRRLSLYADERILSAAIATRTERR 597 AVTR ++ + + A + L+ A+ R R Sbjct: 694 AVTRGKKLVVIIAQPKALALAVTNRKADR 722 >UniRef50_A9BB03 Possible exodeoxyribonuclease V 67 kD polypeptide n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BB03_PROM4 Length = 574 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 148/521 (28%), Positives = 241/521 (46%), Gaps = 72/521 (13%) Query: 98 TPMILCGDRLYLNRMWCNER--TVARFFNEVNH-----AIEVDEALLAQTLDKLFPVSDE 150 +P+IL +RL R W E + + N IEVD+ + T+ + Sbjct: 87 SPIILENNRLGWYR-WDYEMKGIIKDLIKKSNQRPKLAIIEVDKDAIKSTV--------K 137 Query: 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 +N +++ A ++T + ++SGGPGTGKT+T+ ++L + + D E RI LAAPTGKA Sbjct: 138 LNSEQLLALESITSHNLVLLSGGPGTGKTSTIVEMLRKSLSI-DLE-LRIGLAAPTGKAT 195 Query: 210 ARLTESLGKALRQL-PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 RL ESL ++ +L P ++ RIP TLHR L A + + N L LD+LV+ Sbjct: 196 RRLQESLQSSIEELNPQVKDKFYRIP--CLTLHRWLKA--NERGFSKNETNQLDLDLLVI 251 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 DE SM+D+ +M +++ALP ++++ +GD +QL V +GAV ++ N Sbjct: 252 DEMSMVDISLMRGVLNALPKQSQLVLVGDPNQLPPVGSGAVWNELLKSQNQEILGSSRIN 311 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 LS++ R + LL K R DS N + VK+ Q Sbjct: 312 LSKVYRN-------------RGQIALLAKMIR--EDSFNVFWNQIQNLPLSSNVKS-HSQ 355 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA----EPDL------IIQAFNEY 438 + LL+ + A +++ L+ L+ + P+ +++ E Sbjct: 356 KKNSMPSFLLEKLKAKQAEIQKILSNSLETLNTVNTYPATINNPEFDNTIKKLLKTLEEL 415 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 +LC R G + V +++ + ++ +H W EG PV+ N LGL NGDI Sbjct: 416 AVLCPRRFGLWSVEHVHQALLGNSLEEGVMH------WPEGTPVICGENQQELGLSNGDI 469 Query: 499 GIALDRGQGTRVWFAMPDGN----IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 G+ R+ F + K + PSRL + + +A+T+HKSQGSE + L+ P Sbjct: 470 GVIFGSNNERRLIFRVITEKQTLEPKLIHPSRLRKVDPAYALTIHKSQGSEVNDVVLLWP 529 Query: 555 ------------SQRTPVVTRELVYTAVTRARRRLSLYADE 583 +R + L+YTA+TRA+ + L E Sbjct: 530 DDSYICDQQIKQDKRNENYDKSLMYTALTRAKNKFDLILPE 570 >UniRef50_C9RK23 Helicase, RecD/TraA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK23_FIBSS Length = 691 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 131/421 (31%), Positives = 195/421 (46%), Gaps = 68/421 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A +AL+R+IS+I+GGPGTGKTT + +L QM E C + L APTG+AA R+ Sbjct: 306 QKRAIQMALSRKISIITGGPGTGKTTILKGILYLARQM---EEC-VSLTAPTGRAAKRMG 361 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E G E A T+HRLL P S + N L ++L+VDE SM Sbjct: 362 ECCG-----------------EKARTIHRLLEVDPISGKFHRDGDNKLQCNLLIVDEFSM 404 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D + + L++A P +AR++ +GD DQL SV AG VL D+ L Sbjct: 405 VDTWLAASLLEATPLNARIVLVGDADQLPSVGAGNVLNDL------------------LR 446 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 +P+ LQ +R + I A+ IN+G + + +F + Sbjct: 447 CPKIPS-------------TRLQHIFRQAGGNDIADKASKINQG--ISPSPIEGTNFHFL 491 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 +D IA L G +D+ E QLL +R+GP G+ Sbjct: 492 PYESADEAKDIIARL--VTRGIKEKIDI------------NTQEMQLLTPMRKGPLGIYE 537 Query: 454 LNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFA 513 LN ++ + ++ + W G VM RN+ +FNGD+GI G+ T+ Sbjct: 538 LNNFLQDLLNPGKERIKIASGNWSTGDRVMQIRNNYDKNVFNGDVGIIYKIGKDTKKITV 597 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 D +P E +A T+HKSQGSE+ ++L S + ++ R L+YTA+TRA Sbjct: 598 FYDDKTVDYEPDEADELILAYACTIHKSQGSEYPAVIVVLDSSHSIMLQRNLIYTAITRA 657 Query: 574 R 574 + Sbjct: 658 K 658 >UniRef50_D0LH80 Helicase, RecD/TraA family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LH80_HALO1 Length = 768 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 133/451 (29%), Positives = 206/451 (45%), Gaps = 76/451 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ AA A+ + V++GGPG GKTT V ++ ++ + LAAPTG+AA RL Sbjct: 366 QRRAALAAVMDKSVVLTGGPGVGKTTIVRAIVFLFERLGRS----VTLAAPTGRAAKRLA 421 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 ES + DA+T+HRLL QP A NPL DV+++DE SM Sbjct: 422 ESTAR-----------------DAATIHRLLEFQPAGGGFFRSADNPLDSDVVIIDETSM 464 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D+ +++ L+DA+P A+++ +GD DQL SV GAVL D+ A RA + RLT Sbjct: 465 VDIALLAALLDAMPASAQLVLVGDIDQLPSVGPGAVLADLI--------ASRAATVVRLT 516 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV-----KTVFQQ 388 + +R +S I A IN G + + + Sbjct: 517 -----------------------EIFRQARESRIVMAAHEINSGMVPQLAPPQGTSAHRS 553 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 DF Y E+ + +DL+ R + Q+LC + G Sbjct: 554 DF-------------YFISREQPVRARETIVDLVAERIPEAFGFDPLADIQVLCPVHRGE 600 Query: 449 FGVAGLN----ERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD- 503 G LN ER+ + ++ ++ R S + G VM ND G+FNGDIG+ + Sbjct: 601 LGTIALNRALQERLTPAVDEQHQVTRGERS-YRVGDKVMQLENDYDRGVFNGDIGVIFEI 659 Query: 504 RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 G+ +V DG + + L + +A++VHKSQGSE+ L L +Q ++ R Sbjct: 660 AGERKKVLVDYMDGRVVGYEARDLDQLTHAYAISVHKSQGSEYPVVVLPLATQHYIMLQR 719 Query: 564 ELVYTAVTRARRRLSLYADERILSAAIATRT 594 L+YTAVTR + + + + + A+ +T Sbjct: 720 NLLYTAVTRGKSLVVIVGSAKAVRRAVENQT 750 >UniRef50_D1NBM8 Helicase, RecD/TraA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBM8_9BACT Length = 734 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 164/579 (28%), Positives = 252/579 (43%), Gaps = 126/579 (21%) Query: 38 AAALLSHD--AGEGHVCLPLSRLENNEASHPLLATCVSEIGE--------LQNWEECLLA 87 AAA+ S + G GHVCLPL+ L + +E G L+ ++ + Sbjct: 221 AAAVFSVNTLVGNGHVCLPLAELVRQTSELAKQPPAQAEAGIEAAIERRLLRKLDDMIYT 280 Query: 88 SQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPV 147 Q ++R + P ++ L V +F + H + D ++ Sbjct: 281 PQ-LARAETELPELVASLAL-----------VKKFAGQRMHPVPGDNGIVLNQ------- 321 Query: 148 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 Q+ V+L +S+I+GGPG GKTT V ++ ++ A+ RI LAAPTG+ Sbjct: 322 ----EQQRAVDEVSLVP-LSIITGGPGVGKTTVVGEI----VRRAEAAGLRIGLAAPTGR 372 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 AA RL++S G LT A TLHRLL P S R + + +PL +D+L+ Sbjct: 373 AAKRLSDSTG-------LT----------AKTLHRLLQFDPNSNRFQMDSSSPLEVDLLI 415 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 VDE SM+D+ + L A+ V+ +GD DQL SV G VL AGF Sbjct: 416 VDEVSMLDILLALALFRAVRPGTSVVLVGDADQLPSVGPGTVL--------AGFLESEWF 467 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG---DKTAVKT 384 Q++RL + +R +S I A +NRG +K + Sbjct: 468 QVTRLV-----------------------QIFRQAENSHIITNAHRVNRGLLPEKPQPGS 504 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 DF IE+ + +A++E+ +A + + AR D + ++ Q+L + Sbjct: 505 QALSDFYWIEQ---DDPDKALAVIEKMVA------ERIPARFHFDPV----DDVQILTPM 551 Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE-GRPVMIARNDSALGLFNGDIG---- 499 G G +NER++ + K R Y G +M N+ +FNGD+G Sbjct: 552 NRGSCGTVAINERLQALLNPGDKPEFRFGDRVYRAGDKLMQTANNYEKNVFNGDLGRLGR 611 Query: 500 IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHE--------TTWAMTVHKSQGSEFDHAAL 551 I+L T ++ + SRL E+ +A+TVHKSQGSEF L Sbjct: 612 ISLKDKTFTVIF-----------EGSRLVEYNFDEADQLTRAYAITVHKSQGSEFPVVIL 660 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 SQ ++ R L+YTA+TRAR+ L L R + A+ Sbjct: 661 PFLSQHYMMLQRNLLYTAMTRARKLLILVGSRRAVQMAV 699 >UniRef50_B7KWK3 Helicase, RecD/TraA family n=16 Tax=Bacteria RepID=B7KWK3_METC4 Length = 750 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 151/576 (26%), Positives = 255/576 (44%), Gaps = 120/576 (20%) Query: 48 EGHVCLPLSRLENN-----EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL 102 EGH LP++RL E PL+ + V+E + RGDE I+ Sbjct: 245 EGHCALPVARLTELAQKLLEVEAPLIRSAVAE---------------EIERGDEVIQDII 289 Query: 103 CGDR--LYLNRMWCNERTVA-RFFNEVNHA-----IEVDEAL--LAQTLDKLFPVSDEIN 152 GD+ ++L + ER +A R + I++ +AL + Q K S Sbjct: 290 -GDQACVFLRGLHAAERGIADRLIERASGTPPWSEIDLGKALPWVEQKTGKALSPS---- 344 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q A + L ++ VI+GGPG GKT+T L +++++ + + LAAPTG+AA R+ Sbjct: 345 -QAEAVRLLLASKLCVITGGPGVGKTST----LDSVLRILQAKGVHVLLAAPTGRAAKRM 399 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 TE G +A T+HRLL P +PL+ D+LV+DE S Sbjct: 400 TEQTGL-----------------EAKTIHRLLEIDPKHGGFTRDEESPLNCDLLVIDETS 442 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+D+P+M+ L+ A+P A ++ +GD DQL SV G VL D+ Sbjct: 443 MVDVPLMNALLKAVPPRAGLLLVGDVDQLPSVGPGQVLADVI------------------ 484 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 AS R + L + +R ++S I A IN G Sbjct: 485 -------------ASERVPVARLTEVFRQAAESRIIVNAHRINHGQMPE----------- 520 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 R + + Y+ +++ G G+ ++++ R + + Q+L ++ G G Sbjct: 521 -RPRPGEKADFYLIEIDDPEVGVGKLIEIVTRRIPRTFGLDPLRDVQVLTPMQRGSLGSR 579 Query: 453 GLNERIEQFMQQK--RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA--LDRGQGT 508 LN +++ + ++ R R+ G VM +ND +FNGD+G+ +D +G Sbjct: 580 NLNHELQRVLNPNPPAQVERF-GWRFAPGDRVMETQNDYDREVFNGDLGMVARIDDDEGA 638 Query: 509 RVW------FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 + P G + ++ P+ +A T+HKSQGSE+ + + +Q ++ Sbjct: 639 VIVTFDDREVIYPFGELDTLVPA--------FATTIHKSQGSEYPAVVIPIVTQHFNMLA 690 Query: 563 RELVYTAVTRARRRLSLYADERILSAAI-ATRTERR 597 R L+YT VTR ++ + L + + A+ + +T+RR Sbjct: 691 RNLLYTGVTRGKQLVVLIGQRKAIGMAVRSGQTKRR 726 >UniRef50_UPI00016C4690 helicase, RecD/TraA family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4690 Length = 777 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 144/514 (28%), Positives = 238/514 (46%), Gaps = 93/514 (18%) Query: 105 DRLYLNRMWCNERTVARFFNEVNH------AIEVDEAL--LAQTLDKLFPVSDEINWQKV 156 D L+L M+ E VAR + ++ V+ A+ + Q + F S Q+ Sbjct: 330 DLLFLKPMFLAEVGVARSIRALAAGPHPLPSVNVEAAVNWIEQKMGIAFATS-----QRA 384 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A A+T ++ V++ G T ++ A+I+M + R+ L APTG+AA RL ES Sbjct: 385 AIKAAVTNKMMVVT----GGPGTGKTTIVRAIIEMFLAKSLRVLLTAPTGRAAKRLNEST 440 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 G+ +A T+HRLL P ++ +A NPL +D+LVVDE SM+D+ Sbjct: 441 GR-----------------EAKTIHRLLEFNPQQRQFTRNAENPLDVDLLVVDETSMVDV 483 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTH 336 +M+RL+ A+P +A V+ +GD DQL SV AG+VL D+ + ++RLT H Sbjct: 484 VLMNRLLQAVPPYACVVLVGDVDQLPSVGAGSVLTDLI--------DSKVVPVARLTEVH 535 Query: 337 VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKR 396 R S I + A AIN G E + Sbjct: 536 -----------------------RQAESSWIVRAAHAINSGQ---------------EPQ 557 Query: 397 LLQSGED---YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 +G D Y +A R + +++ R + F + Q+L + GVA Sbjct: 558 SAPAGGDGDFYFVEANDADTVIQRVVQMVKERIPARFNLNPFRDIQVLSPQVKTALGVAN 617 Query: 454 LNERIEQFMQQKR----KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALDRGQG 507 +N ++Q + R ++ R+ + + G VM +N+ +FNGDIG A+D + Sbjct: 618 MNRELQQALNPARPGLAEVQRNGET-YRIGDKVMQVQNNYDREVFNGDIGRIDAIDTDE- 675 Query: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 ++ DG + S L E + ++A T+HKSQGSE+ + + +Q ++ R L+Y Sbjct: 676 -QMLVVDYDGRFVEYEFSDLDELQLSFACTIHKSQGSEYPAVVIPVHTQHFVMLQRNLLY 734 Query: 568 TAVTRARRRLSLYADERILSAAIAT-RTERRSGL 600 T +TR R+ ++L + + A++T T++R L Sbjct: 735 TGITRGRKLVALVGSRKAMRIAVSTADTKKRFSL 768 >UniRef50_A3Z806 Probable exodeoxyribonuclease V, alpha subunit RecD n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z806_9SYNE Length = 565 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 149/440 (33%), Positives = 219/440 (49%), Gaps = 51/440 (11%) Query: 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLA-ALIQMADGERCRIRLAAPTGKA 208 +N ++ A A+ R R+ ++SGGPGTGKT+TV ++LA AL AD RI LAAPTGKA Sbjct: 133 LNQEQREAVAAIGRHRVVLLSGGPGTGKTSTVVRMLAQALQHQAD---LRIGLAAPTGKA 189 Query: 209 AARLTESLGKALRQLPLT-DEQKKRIPEDASTLHRLLGAQPGSQ-RLRHHAGNPLHLDVL 266 AARL E++ L QLPL E+ ++P +TLHR L A+PG R RH PL LD+L Sbjct: 190 AARLQEAIRSGLPQLPLPLQERLGQLP--CATLHRWLQARPGGYGRHRH---RPLPLDLL 244 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 VVDE SM+DL M + L++AL +A++I +GD QL + GAV + A A Sbjct: 245 VVDELSMVDLAMATALLEALAANAQLILVGDAAQLPPIGVGAVWSHLQQPAQRQRFGSAA 304 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR-FGSDSGIGQLAAA-------INRGD 378 +L R+ A S LLQ+ F + +L AA + R D Sbjct: 305 VELHRV--------YRNRGALAHLSAVLLQEGMEAFWEAAAPDRLGAALAETNVELQRAD 356 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEY 438 + + +V + + ++L A L+ G + ++Q+ + Sbjct: 357 RRTIPSVVIEALQEQRQQLR-------AALQSVQPEPGDSGAFDAEAEAAEAVLQSLDSL 409 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 Q+LC R GP+GV E + + + + W G PV+ A N LGL NGD Sbjct: 410 QVLCPRRRGPWGV----EAVHRALLPAGGVQ-----EWPIGVPVLCAENQDELGLANGDR 460 Query: 499 GIALDRGQGTRVWF----AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 G+ + G+ R+ F A + ++ P+RL E A+TVHK+QGSE D ++ P Sbjct: 461 GLTVGLGEQRRLLFRSVDARGEAQLRLFHPARLKRLEPALALTVHKAQGSEADRVLVLWP 520 Query: 555 SQRTPV---VTRELVYTAVT 571 + + T L+YTA+T Sbjct: 521 DTMSEMPHDTTTALLYTAIT 540 >UniRef50_C7RK95 Helicase, RecD/TraA family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK95_9PROT Length = 752 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 132/450 (29%), Positives = 201/450 (44%), Gaps = 74/450 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A +AL+ ++ VI+GGPG GKTT V +L I G + L APTG+AA RL Sbjct: 333 QKEAIRLALSAKLLVITGGPGVGKTTLVNSILT--IMSVKG--VKPLLCAPTGRAAKRLG 388 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 ES G +A T+HRLL P + + + +A NPL DVL+ DE SM Sbjct: 389 ESTGL-----------------EAKTIHRLLEVNPLNGQFKRNADNPLECDVLIADECSM 431 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ID+P+ ++L+ A+ +I +GD DQL SV G L D+ + Sbjct: 432 IDVPLANQLLKAVATSTVMILVGDVDQLPSVGPGQFLADL------------------ID 473 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 VP + L + +R + S I + A INRG VF Sbjct: 474 SGSVP-------------VIRLTEVFRQAASSRIVRSAHQINRG-------VFPS----- 508 Query: 394 EKRLLQSGED---YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG 450 L GE Y+ EE +DL+Q R + + Q+LC + G G Sbjct: 509 ---LPGKGEASDFYLVAAEEPEVIAQTVVDLVQTRLPRKFHVDPVRDIQVLCPMNRGITG 565 Query: 451 VAGLNERIEQFMQQ--KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT 508 G+N+ ++ + + + + +R+ G VM N+ +FNGDIG + Sbjct: 566 ARGINQALQAALNPPGEHSVDKF-GNRFSVGDKVMQIENNYDRDVFNGDIGFVTGIDRDD 624 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 DG + + L E +A T+HK+QGSE+ + + +Q ++ R L+YT Sbjct: 625 EELAVTFDGRVVTYPFGELDELVLCYATTIHKAQGSEYPVVVMPISTQHYMMLKRNLIYT 684 Query: 569 AVTRARRRLSLYADERILSAAIATR-TERR 597 +TR + + L +R L+ A+ + ERR Sbjct: 685 GITRGKTLVVLVGQKRALAMAVKGKEVERR 714 >UniRef50_Q04YR4 Exodeoxyribonuclease V, alpha subunit n=4 Tax=Leptospira RepID=Q04YR4_LEPBL Length = 616 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 145/511 (28%), Positives = 228/511 (44%), Gaps = 57/511 (11%) Query: 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD 193 E +L K FP+ + Q L ++SGGPGTGKTT VA LL L Q+ Sbjct: 117 EKILKNLESKSFPLKEA---QVKTILSCLNSSFHIVSGGPGTGKTTVVAFLLEILNQLGQ 173 Query: 194 -GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 I L APTG+AA RLTES+ + L+++ E K T+H LL + Sbjct: 174 LPSPEEIALVAPTGRAAQRLTESIQENLKKI---SEMKGSDFLRGQTVHGLLSYKSSLGG 230 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA---------RVIFLGDRDQLAS 303 ++ L +++VDE SM+DL +M L +A+P R I +GD QL S Sbjct: 231 FYYNRERYLPHRLIIVDEVSMVDLNLMLSLWNAIPRDTKKDDRKIPLRFILIGDPHQLPS 290 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL---RDSLCLLQKSYR 360 VE GAVL D + +++A SRL G++ G + + + L ++ Sbjct: 291 VEKGAVLSDFLSV----LESKKANFASRLEGSNRQKSKGNVSKIVVLAEEILGYSPENLN 346 Query: 361 FGS--DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 G+ D + I K + V+ Q+ + L E + E Sbjct: 347 LGTKIDDSFPK-TTTIGENSKYESEVVWLQNPANKTSDHLSRDEVVEKLWTEIFHPGISK 405 Query: 419 LDLLQARAEPDL----IIQAFNE----YQLLCALREGPFGVAGLNERI------EQFMQQ 464 + + + DL I F E ++ L R G +GV + +I + F ++ Sbjct: 406 IGTWKVKDSFDLNEAGFILKFQEELKKFRCLTVFRNGYWGVEAIQTKIMNLAAQDLFHRK 465 Query: 465 KRK----IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT---RVWFAMPDG 517 +K R ++ G P++I +ND LFNGDIGI L R + T R F + +G Sbjct: 466 DQKPDFFAKRLSKRLYFIGLPILITQNDKNRKLFNGDIGIVL-RMESTGELRAVFPI-EG 523 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP----SQRTP----VVTRELVYTA 569 + LP+HE + M++HKSQGSE+D + +P SQ ++ R+++YT Sbjct: 524 KLLPFALDTLPKHEPAFVMSIHKSQGSEYDTILIYIPDHPESQEKERSHRLLNRQILYTG 583 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGL 600 +TRA+ ++ L + + IA +R +G Sbjct: 584 ITRAKNQVILAGNPKTWEIGIANSQKRNTGF 614 >UniRef50_Q7VBJ9 ATP-dependent exoDNAse alpha subunit n=1 Tax=Prochlorococcus marinus RepID=Q7VBJ9_PROMA Length = 564 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 145/513 (28%), Positives = 233/513 (45%), Gaps = 67/513 (13%) Query: 98 TPMILCGDRLYLNRMWCNE--RTVARF-FNEVNHAIEVD---EALLAQTLDKLFPVSDEI 151 +PM+L G+ L R W E + + + I+ D E L Q L Sbjct: 85 SPMVLQGNYLSWRR-WSEEMQNVIDQLTYKSFQQRIKKDQNCETLTRQGFSAL------- 136 Query: 152 NWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 N ++++A A++ + ++SGGPGTGKT T+ +L + + +I L APTGKA Sbjct: 137 NLEQLSAVEAISNHNLILLSGGPGTGKTHTIVNMLIKALSIHPN--LKIGLGAPTGKATR 194 Query: 211 RLTESLGKALRQLPLTDEQKKRIPE-DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 RL E++ ++ L L +E K ++ + TLHR L A G + N L LD+LV+D Sbjct: 195 RLEETIQQS--SLNLDEEYKIKLAKIPCLTLHRWLQAVEG--KFLKGKKNKLQLDILVID 250 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+DL +M +++ALP +++I +GD DQLA V GAV + + A L Sbjct: 251 EMSMVDLSLMQAVLNALPKESQLILVGDPDQLAPVGNGAVWHKLQEESTREIFKHCAIHL 310 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 S+L T + + + C + S S + L++ K + Sbjct: 311 SKLYRTRGEVASLAKVIRNKGLSCFFMELKNIPSSSNVNVLSST-----KEVIPIQIVNK 365 Query: 390 FTDIEKRL-LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 + + +L + E + + Y L +R ++ E +LC R G Sbjct: 366 IKEHQNKLRSHTKEARVYLRSNPTGNLHSYNQKLTSR-----VLDCLEELIVLCPRRHGL 420 Query: 449 FGVAGLNERIEQFM---QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 +G+ E I Q + Q + S W EG PV+ N S + L NGDIG+ + Sbjct: 421 WGI----EHIHQTILGNQSDEGV-----SSWPEGTPVICGANQSEIHLANGDIGVVIGED 471 Query: 506 QGTRVWF---AMPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 Q ++ F ++ G + + P+R+ E +A T+HK+QGSE +H + P P+ Sbjct: 472 QNKKLLFRVNSLEKGITTQLIHPARVKSLEPAFATTIHKAQGSEAEHVICLWPD---PIN 528 Query: 562 TRE---------------LVYTAVTRARRRLSL 579 T+E L+YTA+TRAR +L L Sbjct: 529 TKESANNELIRNENYERRLIYTAITRARTKLDL 561 >UniRef50_A4XG10 ATP-dependent DNA helicase, RecD/TraA family n=2 Tax=Clostridia RepID=A4XG10_CALS8 Length = 741 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 164/589 (27%), Positives = 261/589 (44%), Gaps = 123/589 (20%) Query: 47 GEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCG-D 105 EGH+CLP +L VS+ E Q+ E+ A ++ + + G + Sbjct: 225 NEGHICLPKEKL----------ILFVSKALE-QDTEKVEEALDSLIKAKRVVIDTVDGLE 273 Query: 106 RLYLNRMWCNERTVAR----FFNEVNHAIEVDEALLAQTLDKLFPVSDEINW---QKVAA 158 ++L + ER +A E + +++DE + F + I + QK A Sbjct: 274 MVFLYGFFECERYIAEKIASMLKEYDDILDIDERISE------FEKKNSIVFSQNQKKAI 327 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 +ALT+ +SVI+ G T ++ +I++ + E ++ L APTG+AA R+ + K Sbjct: 328 KMALTQGVSVIT----GGPGTGKTTIIKCIIEIFEQEGKKVFLCAPTGRAAKRMQQQCEK 383 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG--NPLHLDVLVVDEASMIDL 276 +A T+HRLL ++ G NPL DV++VDE SM+D Sbjct: 384 -----------------EAKTIHRLLEMTVTDSQVFFQKGPNNPLRCDVIIVDEMSMVDS 426 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTH 336 +M L+ A D R++ +GD+DQL SV AG +L D+ + Sbjct: 427 YIMYYLLSATKDTTRLVLVGDKDQLPSVGAGNILKDL------------------IRSDV 468 Query: 337 VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKR 396 VP TE YR DS I A IN G+ ++ DF I+K Sbjct: 469 VPYVRLTEV-------------YRQSEDSFIVLNAHRINNGEFPYLQK--NSDFYFIQK- 512 Query: 397 LLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 S E+ + + E + YL A+P + Q+LC ++G G+ +N Sbjct: 513 --NSPEEILKTIVELVTKKLPNYL-----SADP------LTDIQVLCPSKKGVVGMYNIN 559 Query: 456 ERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSAL---------------GLFNGD 497 ++Q++ K +K + + + G VM +N+ +L G+FNGD Sbjct: 560 RVLQQYLNPKDGSKKEVVYKENTFRVGDKVMQIKNNYSLEFTIIEGEEKGKVSTGIFNGD 619 Query: 498 IGIA--LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 IG+ +DR G+ + D + S L + E ++AMTVHKSQGSEF +++P Sbjct: 620 IGVIKDIDRA-GSAMEIVFDDDKLVFYDFSLLDDLELSYAMTVHKSQGSEF--RCIVMPV 676 Query: 556 QRT-PV-VTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGL 600 T P+ +TR L+YTAVTRA+ + L + L IA + E R S L Sbjct: 677 VETYPILMTRNLLYTAVTRAKELVVLVGKKSALEYMIANQKEAMRYSAL 725 >UniRef50_Q14LX3 Putative exodeoxyribonuclease v alpha subunit protein n=1 Tax=Spiroplasma citri RepID=Q14LX3_SPICI Length = 720 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 132/510 (25%), Positives = 226/510 (44%), Gaps = 85/510 (16%) Query: 82 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL 141 +E LLA S+ E +I D++Y+ ++ +E +A +N + D+ L + L Sbjct: 251 KEQLLAGLKYSK--EIKLLIFKNDKIYVAEVYHSEINIAAMLVGLNTTDQYDDQKLTEEL 308 Query: 142 DKLFPVSDEINW---QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 +KL +I + Q A A+ VI GGPGTGKTT V +++ L ++ ++ + Sbjct: 309 EKL-TNKKQIIYNMNQTKAIKTAVHSNFLVIIGGPGTGKTTVVDGVVSLLKKVY--QQSK 365 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTGKAA RL E G+ A T+H+LL + + ++ Sbjct: 366 IVLAAPTGKAAKRLREKTGRK-----------------ALTIHKLLKYDALTNQFFYNEN 408 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL D+L++DE SM+D +++++ A + ++I +GD +QL SV G +L DI + Sbjct: 409 NPLENDILILDEVSMVDSLLLAQIAKASVNLRKLILIGDPNQLPSVACGDLLRDII--QS 466 Query: 319 AGFTAERARQLSRLTGTH--VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 F + ++ R + + E D+ +K + F IN Sbjct: 467 DVFNVIKLEEVYRQEAGNDILELSYAIEQEHFEDNNLFDKKDFTF------------INE 514 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 D A+ TV + +I + E D +N Sbjct: 515 TDSQALLTVVGDLYQNISN-----------------------------QYEAD-----YN 540 Query: 437 EYQLLCALREGPFGVAGLNERIEQFM-----QQKRKIHRHPHSRWYEGRPVMIARNDSAL 491 Q++ + GP G+ LN ++ M Q++ KI H + VM +N L Sbjct: 541 AIQVIAPMYNGPVGINALNTYLQNRMNHAVGQKEIKI---GHRFFRVNDKVMQLKNRPEL 597 Query: 492 GLFNGDIGIALD--RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 ++NGD+GI +D + + + N+ + + +A +VHK QGSE+D+ Sbjct: 598 EIYNGDVGIIIDIKKDKNLNDVILVKYDNVITYTKELYYDITLAYACSVHKLQGSEYDNI 657 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSL 579 ++ ++ R L+YTA+TRA+ +L L Sbjct: 658 IFVITKSFWMMLKRNLIYTAITRAKTKLYL 687 >UniRef50_C0AD34 Exodeoxyribonuclease V n=2 Tax=Verrucomicrobia RepID=C0AD34_9BACT Length = 759 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 134/458 (29%), Positives = 205/458 (44%), Gaps = 72/458 (15%) Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 F +D+ Q+ A AL + S+++GGPGTGKT + L AL+ + ++ RI LAAP Sbjct: 352 FQFADQ---QRAALRAALVSKASILTGGPGTGKTAS----LRALVDILKAKKVRIHLAAP 404 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG+AA RLTE+ G A+T+HRLL H+ PL D Sbjct: 405 TGRAAQRLTETTGGY-----------------ATTIHRLLKYDAAKGGFVHNEHQPLATD 447 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 LVVDEASM+D + + L+ A+P A ++ +GD DQL SV AG VL DI A Sbjct: 448 FLVVDEASMLDTRLAAALLQAIPSRAHLLLVGDIDQLPSVGAGNVLKDIIAT-------- 499 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 HVP + L +R S I A AIN GD + T Sbjct: 500 ----------QHVP-------------VTRLNVIHRQQGQSQIVTTAHAINAGDPSLPPT 536 Query: 385 VFQ----QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 V Q + D+ S ED + + + + + +A P + + Q+ Sbjct: 537 VGDISAIQVWGDLVFLAADSAEDCVRKVIQLCTEF-----VPRALKWPHPV----KDVQV 587 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L + +G GV N +++ + + R P + G ++ RN+ LFNGDIG Sbjct: 588 LAPMHKGAAGVGNFNTQLQAALNPRAPGLRTPSGEFRVGDKIIQLRNNYDKNLFNGDIGT 647 Query: 501 --ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 A+D +G + A DG + A+++HKSQGSE+ + L Sbjct: 648 ITAVDAEEGA--FDATFDGETHVFARGDAGDLALAHAISIHKSQGSEYPVVIVPLMKAHF 705 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 ++ R L+YTA+TR ++++ + + + A+ R Sbjct: 706 MMLQRNLLYTAITRGKKKVYIVGEPAAYAMAVRNNEAR 743 >UniRef50_C9RQA9 Exodeoxyribonuclease V n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQA9_FIBSS Length = 706 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 132/469 (28%), Positives = 224/469 (47%), Gaps = 57/469 (12%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK--------KRIPE 235 LLA+ +M D I LAAP+GKAA R+ ESL L + DEQK +++ E Sbjct: 243 LLASHSEMLD---WNIYLAAPSGKAADRMRESLVGGLSNI--LDEQKTGDNERIFRKLNE 297 Query: 236 -DASTLHRLL--GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 ++ST+HRLL G P + + V+DEASMID+ M + L++A+P+ AR+ Sbjct: 298 LESSTIHRLLRFSRSKGCFTFNRKEQFPKN-SIFVIDEASMIDIEMFAALLEAIPEGARI 356 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL---TGTHVPAGTGTEAASLR 349 LGD QL SV++GAVLG+I + + + + +R + A E A Sbjct: 357 FILGDSFQLPSVDSGAVLGEILKVQSGKNFSVKLNESNRFDDRSNIGKLAAEIKEVAECN 416 Query: 350 DSLCLLQKSYRFGSDSGI--GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 DS + + + + + + DK K + D +K + E +I Sbjct: 417 DSNKFVPHKFTITGEEPVSENENTSFPEFKDKVLYKCLETDDKPLTKKEEEKLIESFIGK 476 Query: 408 LEEALAGYGRYLDLLQAR------AEPDLI-IQAFNEY-------QLLCALREGPFGVAG 453 E A + + + +PD I + N+ ++LCA R G G+ Sbjct: 477 WSEEFAKLPELAEQINPQRTGIEADDPDKIETKRRNDIWRLSLTKRILCAERRGLRGIEN 536 Query: 454 LNE----RIEQFMQQKRKIH----RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 +N+ +I+ + K+K + S ++ G+ ++I +N L+NGD GI + G Sbjct: 537 INKKVCSKIKSLWRTKKKKEGKTVQWDDSGYFPGQLLIITKNQEMFKLYNGDTGIVVFDG 596 Query: 506 QGTRVWFAMPDGNIKSVQPSR----------LPEH--ETTWAMTVHKSQGSEFDHAALIL 553 + + K +Q +R LPE T +A+T+HKSQGSE++H + L Sbjct: 597 NTPCLMLKKAAPHRKDLQKTRDDYVFYPLSVLPEDSISTAFAITIHKSQGSEYNHVTMFL 656 Query: 554 PSQ-RTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 P++ P++T +++YT +TRA +++ A++ AA+ T +ER +G++ Sbjct: 657 PTKIGHPLLTNQIIYTGITRAMESVTIIANDDTFRAAVTTVSERDTGIS 705 >UniRef50_D1A5Y8 Helicase, RecD/TraA family n=15 Tax=Bacteria RepID=D1A5Y8_THECD Length = 762 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 135/447 (30%), Positives = 206/447 (46%), Gaps = 69/447 (15%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A +ALTR+++V++GGPG GK+ TV +++++A ++ + L APTG+AA RL Sbjct: 356 QRQAVQLALTRKVAVLTGGPGCGKSFTVR----SVVELAKAKKATVLLVAPTGRAAKRLA 411 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E G +AST+HRLL QPG ++ +PL D++VVDE SM Sbjct: 412 ELTG-----------------HEASTVHRLLELQPGGDP-KYDRDHPLQADLVVVDECSM 453 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +DL + ++L+ A+P A ++ +GD DQL SV AG VL D+ L Sbjct: 454 LDLVLANKLVKAIPPGAHLLLVGDVDQLPSVGAGEVLRDL------------------LA 495 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 +P L K +R SGI A IN G A+ T F F Sbjct: 496 ADVIPH-------------VRLTKIFRQAQQSGIVVNAHKINAGRPPAL-TGFSDFFWFG 541 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 + SG L A +D++ R + + Q+L + GP G A Sbjct: 542 CEPPADSG------LNPAEETAKLVVDIVARRIPARFGLDPRRDVQVLTPMHRGPAGAAS 595 Query: 454 LNERIEQFMQQKRK---IHRHPHSRWYEGRPVMIARND---SALGLFNGDIGI--ALDRG 505 LN +++ + R+ RH + G V RN+ G+FNG +G+ L Sbjct: 596 LNALLQEALTPYREGVPERRHGGRVFRPGDKVTQLRNNYDKGKAGIFNGTVGVVTGLSLE 655 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 GT D + + L E +A+T+H+SQGSE+ + + ++ R L Sbjct: 656 DGTLTVVTDEDETV-DYDFAELDELAHAYAVTIHRSQGSEYPAVVVPITMSAWTMLQRNL 714 Query: 566 VYTAVTRARRRLSLYADERILSAAIAT 592 +YTAVTRAR+ + L R L+ A+ T Sbjct: 715 LYTAVTRARKLVVLVGSRRALAVAVRT 741 >UniRef50_B0B9E0 Exodeoxyribonuclease V alpha chain n=15 Tax=Chlamydiaceae RepID=B0B9E0_CHLT2 Length = 746 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 126/446 (28%), Positives = 205/446 (45%), Gaps = 71/446 (15%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A + +++I +ISGGPGTGK+T +L+ +++ ++ I LAAPTGKAA R+T Sbjct: 335 QKEALHASSSQKIHIISGGPGTGKSTITRAILSIFEKISSPKK--IILAAPTGKAAKRMT 392 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E GK T+H LL + R + +P+ D+++VDE+ M Sbjct: 393 EITGKR-----------------TQTIHSLLQYDFKTLSFRKNHEDPIDCDLVIVDESGM 435 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ID ++ R + ALPDHA +I +GD QL SV G VL D+ + Sbjct: 436 IDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDL------------------IL 477 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF-QQDFTD 392 H+ + L K +R +S I A +N+G+ + + ++DF Sbjct: 478 SHHI-------------EVTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGKKDFLF 524 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 +K ED EEA+ +++ L + P + Q+L +R+G G+ Sbjct: 525 FQK------ED----PEEAI----KHIIHLVSDFVPKKFGIFTKDIQVLAPMRKGVLGIL 570 Query: 453 GLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF 512 LN ++ + + + + G VM RN+ +FNGDIG T+ Sbjct: 571 NLNRELKAALNPNKLFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYVTSIDLSTKSLI 630 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT--RELVYTAV 570 DG S + L + +A ++HK QGSE + +ILP + V R L+YTA+ Sbjct: 631 VCVDGRYISYSQAELNDLIPAYATSIHKYQGSE--TSCIILPIHTSHYVMLYRNLLYTAI 688 Query: 571 TRARRRLSLYADERILSAAIATRTER 596 TR ++ + L ++ + AIA R ++ Sbjct: 689 TRGKKLVILVGTKK--AVAIAVRNDK 712 >UniRef50_C3RPY6 Exonuclease V subunit alpha n=1 Tax=Mollicutes bacterium D7 RepID=C3RPY6_9MOLU Length = 737 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 145/497 (29%), Positives = 215/497 (43%), Gaps = 100/497 (20%) Query: 111 RMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVIS 170 ++ N + R N ++H I+ E + F ++D+ QK A AL+ S+IS Sbjct: 306 KLVSNSKLKKRDKNRIHHYIDNYE-------ENHFKLADK---QKEAIESALSNTFSIIS 355 Query: 171 GGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 G PG+GKTT + + + + RI L APT KAA R+ +S G Sbjct: 356 GPPGSGKTTIIDVICSYFKYY--NKNIRINLCAPTAKAAKRMFDSTGIQ----------- 402 Query: 231 KRIPEDASTLHRLLGAQP--GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 AST+HRLL P G +++ NPL D+LVVDE SM+DL M L+ A+P+ Sbjct: 403 ------ASTIHRLLEFNPADGEGGFKYNEYNPLKTDILVVDEFSMVDLLMTENLLKAIPE 456 Query: 289 H-ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 +IF+GD +QL SV+AG VL D+ + +P+ Sbjct: 457 TITALIFVGDINQLPSVDAGRVLEDMLQ-------------------SKIPS-------- 489 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI-EKRLLQSGEDYIA 406 LL K YR DS + L A++ + +++ +DF EK L E + Sbjct: 490 -----TLLNKIYRQQEDSTL--LQKALDFSKEKSIELADTKDFFFYSEKNELAIQEGVVN 542 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 + + YG LL EG FGV LN I+ + K Sbjct: 543 LFISEVEKYG------------------IENVALLIPQNEGTFGVNTLNCLIQDKLNPKL 584 Query: 467 KIHRHPH----SRWYE-GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKS 521 P SR + G V+ N+ +FNG +G D G + F D I Sbjct: 585 -FDTTPELRSGSRKFRIGDRVIHTVNEDNHNVFNGMVGTITDIEIGDKD-FDTEDTIIVD 642 Query: 522 VQPSRLPEH--------ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 L E+ + +AMT+HKSQGSE+ +IL ++T++LVYT +TRA Sbjct: 643 YGEDELSEYHRDRFDNIKLAYAMTIHKSQGSEYKSVIMILHMANRFMLTKKLVYTGMTRA 702 Query: 574 RRRLSLYADERILSAAI 590 + L L DE ++ A+ Sbjct: 703 KSYLHLVGDEYAVNYAM 719 >UniRef50_B7J2I8 Exodeoxyribonuclease V, alpha subunit n=23 Tax=Borrelia RepID=B7J2I8_BORBZ Length = 610 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 125/464 (26%), Positives = 227/464 (48%), Gaps = 62/464 (13%) Query: 127 NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAA-VALTRRISVISGGPGTGKTTTVAKLL 185 NH E+++ + + L ++ +N +++ + AL ++SGGPGTGKTTT+ +L Sbjct: 173 NHKSELNDNKIQNIISNL--NTNNLNKEQITSVRKALKSNFFLLSGGPGTGKTTTINYIL 230 Query: 186 AALIQ-MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 A+ + + + ++ + + APTGKA+ RL S+ + + L + + +T+ +LL Sbjct: 231 KAINKTLNNKKKGLVAITAPTGKASLRLQTSIDYSFKNLEI----------ECNTIQKLL 280 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 G + +++ + N L+ DV+++DEASM+D +L+ A P ++I +GD++QL SV Sbjct: 281 GIKFINKKNLYDEENQLNFDVIIIDEASMVDAHTFLKLLKATPITTKLIMVGDKNQLPSV 340 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 G V S L G E L++++R S+ Sbjct: 341 NEGNV-------------------YSSLLGIQKINSDNVED---------LKENFR--SN 370 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQD----FTDIEK-RLLQSGEDYIAMLEEALAGYGRYL 419 I L+ AI + D T + + +IEK L + +Y L + + L Sbjct: 371 KEINLLSKAIYKEDSTLICKYINNNKNIQLKEIEKINLKKDLIEYTNNLYRKIPTFN--L 428 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 LL+ ++ + I++ E +L + G FG LNE I+ ++++ + + G Sbjct: 429 KLLK-ESKIETILETLLENIILSSKNFGKFGTKTLNEIIKTYLKK-------TYGSFI-G 479 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 + +MI + D LFNG+ G+ + F D K + L +E ++A T+H Sbjct: 480 QIIMITKTDYKNKLFNGERGVIFNENSKFYALFQRKDEKYKKINLDLLTNYEFSFATTIH 539 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 KSQGSE+ H +IL + P +T+EL+YTA+TRA+ L + +++ Sbjct: 540 KSQGSEYKHIKVIL--ENNPFLTKELMYTAITRAKDSLEIISNK 581 >UniRef50_A3YYL0 UvrD/REP helicase-like protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YYL0_9SYNE Length = 569 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 143/437 (32%), Positives = 213/437 (48%), Gaps = 79/437 (18%) Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KT+T+ ++LAA+++ G R++LAAPTGKAAARL +++ LP + Sbjct: 175 KTSTIVQMLAAVLEERPG--WRLQLAAPTGKAAARLRQAIAAGGSTLP-PPLGAQLAASP 231 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 +TLHRLL ++ +R + +PL LD+LVVDE SM+DLP+M+ L++A+PD A+++ +G Sbjct: 232 CTTLHRLLESR--GERFGRNREHPLALDLLVVDEVSMLDLPLMAALLEAMPDQAQLVLVG 289 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQLA V GAVL ++ A A RQ ++ DS L Sbjct: 290 DPDQLAPVGPGAVLQELQAPAR--------RQ------------------AMGDSAIELS 323 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY----------IA 406 +YR +D + A + RGD F QD + LL++ ++ A Sbjct: 324 TTYR--NDGALALAAGRLRRGDAHG----FLQDLS-----LLKASDNLSWWPCPAGRLPA 372 Query: 407 MLEEALAGYGRYLDLLQAR--AEPDLIIQAF-NEYQ---LLCALREGPFGVAGLNERIEQ 460 L E L + L L AR PD + Q +E + +L R G +GV LN+R+ Sbjct: 373 ELLERLRAHQAQLAQLAARWSENPDGLTQELLDEVERCVVLAPTRRGRWGVESLNQRL-- 430 Query: 461 FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI--------------ALDRGQ 506 R P S W G PV+ RN GL NGD+G+ + D G Sbjct: 431 ---LGDDWSRGPAS-WPPGTPVLCQRNLPEQGLANGDVGVVVDVEGQRQLLFWGSQDPGD 486 Query: 507 GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 G + G + V PSR+ E +A+T+HKSQGS++ +++P R L+ Sbjct: 487 GRNEGTSATGGGSRLVHPSRMAAAEVAFAITIHKSQGSQYQQVLVLMPEGEG-RWDRRLL 545 Query: 567 YTAVTRARRRLSLYADE 583 YTA+TRAR++ L E Sbjct: 546 YTALTRARQQAVLITPE 562 >UniRef50_A6GES1 Exodeoxyribonuclease V n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GES1_9DELT Length = 813 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 131/451 (29%), Positives = 201/451 (44%), Gaps = 67/451 (14%) Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 +++++GGPGTGK+T VA +L +A I LAAPTG+AA RL ++ G+A R Sbjct: 370 VTILTGGPGTGKSTVVANVL----NVAKAALVPIMLAAPTGRAAKRLEQTTGEAAR---- 421 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 T+HRLL Q + +H A +PL ++V+DE+SM+DL + LI + Sbjct: 422 -------------TVHRLLEVQGETGEFKHCANDPLPPGLVVIDESSMLDLELAEALITS 468 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 L R++ +GD DQL SV G VL D+ A G Sbjct: 469 LTADNRLLLVGDADQLPSVGPGNVLRDLIRAAET---------------------LGERG 507 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L + L + +R S I A + G A D D K +GE ++ Sbjct: 508 GELEVPVVRLDRIFRQQEGSTIVLNAHHVLSGRPLA------PDGADRGK----AGEFFV 557 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 +A + + +++ R + E Q+LC + +G G N ++ Sbjct: 558 LRAPDAERTHAKIVEMAAERIPAAFGLDRITEVQVLCPMHKGRAGTEAFNRALQARYTGD 617 Query: 466 RKIHRHPHSR---------WYEGRPVMIARNDSALGLFNGDIGIALDRGQ----GTRVWF 512 R+ P + + G VM RND G+FNGDIG+ L Q G Sbjct: 618 RECLEAPGAGRGKGGDGRVFRLGDRVMQIRNDYDRGVFNGDIGVVLRMDQSAANGAGTMT 677 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 +G++ + + L +A+++HKSQGSEF + + ++ ++ R L+YTA+TR Sbjct: 678 VDFEGSLSTYERKDLGSLRLAYAISIHKSQGSEFPAVLIPMLTEHHVMLRRNLLYTAMTR 737 Query: 573 ARRRLSLYADERILSAAI--ATRTERRSGLA 601 ARR L D R + AI A R +GLA Sbjct: 738 ARRLCVLVGDPRAIERAIRRADAAHRWTGLA 768 >UniRef50_UPI0001B44E5F RecD/TraA family helicase n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI0001B44E5F Length = 639 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 208/459 (45%), Gaps = 95/459 (20%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 +K A L ++S+I+GGPGTGKT ++ L + + +IRL APTGKA+ R+ Sbjct: 227 RKEALNTVLNSKLSIITGGPGTGKTFLTNIIVNCLKYI--NPKVKIRLLAPTGKASNRM- 283 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 K+ I ++ST+HR L P ++ + DV+++DEASM Sbjct: 284 ----------------KELIKMESSTIHRGLKINP----YKNTELEEITEDVVIIDEASM 323 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ID + +LI + ++ VI +GD DQL SV AG +L D+ + Sbjct: 324 IDASLFDKLISKINENTMVIIVGDVDQLPSVGAGLILKDL------------------ID 365 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 +P + L K +R DS I + +N G T +D DI Sbjct: 366 SNIIP-------------VVKLNKIFRQSKDSSIILNSHKVNSGLLTT-----SRDGIDI 407 Query: 394 EKRLLQSGEDYIAMLEEAL----AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 L ++G D+I E + + R + L + F + +L L+ Sbjct: 408 ---LNKTGSDFIFWKESNIFKIKSNILRSIKCLMEKYNF-----KFEDIYILTPLKLNEI 459 Query: 450 GVAGLNERIEQFMQQKRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ 506 GV +N ++Q K + ++ + G VM N+ LG+FNGDIG R Sbjct: 460 GVKEINRVLQQEFNPKSSNPEYVIDNYNCFRIGDRVMQNSNNYNLGVFNGDIGFI--RKI 517 Query: 507 GTRVW------------FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 T+V + + D N+ + + E E ++AMT+HKSQGSEF A+I+P Sbjct: 518 YTKVSQKGILEYEIEVEYKIHDKNVIYTE-DLIDELELSYAMTIHKSQGSEF--PAVIMP 574 Query: 555 ---SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 SQRT + R L+YT +TRA+ +L + +E L+ +I Sbjct: 575 IHHSQRTS-LNRNLIYTGMTRAKEKLIMIGEEEALNYSI 612 >UniRef50_C7RH25 Helicase, RecD/TraA family n=4 Tax=Anaerococcus RepID=C7RH25_ANAPD Length = 719 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/415 (28%), Positives = 187/415 (45%), Gaps = 88/415 (21%) Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 L APTG+AA R+ ES G EDA T+HRLLG +P + NP Sbjct: 357 LTAPTGRAAKRIKESTG-----------------EDAYTIHRLLGIRPDEVVAEFNEENP 399 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 + D ++VDE SM+D+ +M L+ A+ D +I +GD DQL SV G VL DI Sbjct: 400 IDKDYIIVDETSMVDIFLMKNLMAAIGDKTAIILVGDSDQLPSVGPGNVLKDIL------ 453 Query: 321 FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 T S+R L+K +R S I A IN+G K Sbjct: 454 ---------------------NTNVESVR-----LKKIFRQAGKSNIIVNAHRINQG-KY 486 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 + +DF I+ + D+I++L L++ R + Q+ Sbjct: 487 PILNEKDKDFFFID----TAASDFISVLTS----------LVKERLTKYYNFDPIKDIQI 532 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSAL--------- 491 L ++ +GV +N+ I++ + +++ + + + + VM RN+ L Sbjct: 533 LSPSKKTDWGVVNINDHIQESINKEKNLLKINNKIFKLNDKVMQVRNNYDLKSINHEEDY 592 Query: 492 --GLFNGDIGI-----ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 G++NGDIGI +D R DG + + + + + ++A+T+HKSQGS Sbjct: 593 DEGVYNGDIGIIENIDKIDESLDVR----FDDGRLIRYKKEDIKDLDLSYAITIHKSQGS 648 Query: 545 EFDHAALILP-SQRTPV-VTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 EF +I+P Q P+ +TR L+YT VTRAR+ + L +++IL + R Sbjct: 649 EF--PCVIIPMMQVAPMLLTRNLLYTGVTRARKIVILLGNKKILKTMVDNNKSNR 701 >UniRef50_B2A0E3 Helicase, RecD/TraA family n=3 Tax=Bacteria RepID=B2A0E3_OPITP Length = 871 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 131/446 (29%), Positives = 211/446 (47%), Gaps = 54/446 (12%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A ALT + S+++ G T +L AL+++ ++ R+ LAAPTG+AA RL Sbjct: 448 QRRAVRAALTSKFSILT----GGPGTGKTTILRALVEILKAKKVRVHLAAPTGRAAQRLA 503 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E+ G AST+HRLL P + + PL D L+VDEASM Sbjct: 504 ETTGGY-----------------ASTIHRLLKWDPAAGGFIANESTPLSTDFLIVDEASM 546 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D + S L+ A+P A ++ +GD DQL SV AG VL D+ A + QLS L Sbjct: 547 LDTRLASALLQAVPARAHLLLVGDIDQLPSVGAGNVLKDLIVVAEG---SAPHPQLSTLN 603 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKS--YRFGSDSGIGQLAAAINRGDKTAVKTVFQQ--- 388 ++ A+LR ++ + + S YR SGI A AIN GD + + F + Sbjct: 604 ---------SQPAALRAAIPVTRLSVVYRQKDHSGIVSTAHAINSGDAS-LPPAFGEIAD 653 Query: 389 --DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE 446 ++D+ ED + + + + + Q P+ I + Q+L + + Sbjct: 654 VPPWSDLAFITAADAEDCLRKVIQLCTEF-----VPQKLHWPNPIA----DVQVLAPMHK 704 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALDR 504 G GVA LN +++ + + R + V+ RN+ LFNGDIG +++D Sbjct: 705 GVAGVANLNVQLQAALNPHARGLRAATGEYRPADKVIQLRNNYDKNLFNGDIGSVVSVDA 764 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 GT V A DG + + + + +++HKSQGSE+ + L ++ R Sbjct: 765 EHGTMV--AEFDGEQHTFERGDFSDLALAYTISIHKSQGSEYPVVVIPLLKGHFMMLQRN 822 Query: 565 LVYTAVTRARRRLSLYADERILSAAI 590 L+YTA+TR R+++ L + + A+ Sbjct: 823 LIYTAITRGRKKVYLVGEPAAYAMAV 848 >UniRef50_D1PL62 Helicase, RecD/TraA family n=3 Tax=Ruminococcaceae RepID=D1PL62_9FIRM Length = 743 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 162/561 (28%), Positives = 240/561 (42%), Gaps = 109/561 (19%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 +L H+AG GH CLP ++L A L+ + E G +E L + + R + T Sbjct: 224 VLRHNAGNGHTCLPRAKLLETTAKFLLVTSLDIENG----LDELLQSGELQPRTFDDTEY 279 Query: 101 ILCGDRLYLNRMWCNERTVAR------FFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQ 154 I D L E AR F E +E D + A + + FP + Q Sbjct: 280 IFLPDLL-----SAEEDIAARLGELSTFPTEPPKTLESD--IHALEIVQGFPYAP---LQ 329 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 + A +AL+ R+ V++ G T + A++ + +GE R+ L APTG+AA RL+E Sbjct: 330 REAIRMALSNRVMVLT----GGPGTGKTTTVNAILSLYEGEYDRVALCAPTGRAAKRLSE 385 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ--PGSQRLRHHAGNPLHLDVLVVDEAS 272 LT AST+HRLL G+ R H+ N L DV+++DE S Sbjct: 386 ----------LTHHT-------ASTIHRLLEVDYTTGAVRFIHNEKNLLKYDVIILDEMS 428 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+D+ + L+ A H R+I +GD DQL SV G +LG+I L Sbjct: 429 MVDVKLFQSLLAAARYHCRIIMVGDADQLPSVGPGNILGEI------------------L 470 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 + VP TE +R S I Q A I +G++ K Q DF Sbjct: 471 SAGVVPTVRLTEI-------------FRQAQKSLIVQNAHRIVQGEQPQ-KGTAQDDFFI 516 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 +EK LA DL+ R + Q+LC ++G G Sbjct: 517 MEK--------------NGLACQKLICDLVSERLPRAYGFDPIRDIQVLCPAKKGTTGSV 562 Query: 453 GLNERIEQFMQ----QKRKIHRHPHSRWYE-GRPVMIARND-----------SALGLFNG 496 LN +++ + +K ++ S+ G VM +ND + +G +NG Sbjct: 563 ELNRCLQEVLNPPSPRKPQLGGEKGSKILRLGDKVMQIKNDYDITFERSGAEAGVGAYNG 622 Query: 497 DIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 D+GI + +R M D +L E E +A+T+HKSQGSEF A+I+P Sbjct: 623 DMGIITEVDVESRSVTVMMDDRKYVYSADQLGELEPAYAVTIHKSQGSEF--PAIIVPVA 680 Query: 557 RTP--VVTRELVYTAVTRARR 575 P + R L+YT VTRAR+ Sbjct: 681 DVPPRLRYRNLLYTGVTRARK 701 >UniRef50_A5CCM9 Helicase RecD/TraA, ATP-dependent exoDNAse (Exonuclease V) n=2 Tax=Orientia tsutsugamushi RepID=A5CCM9_ORITB Length = 731 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 126/440 (28%), Positives = 199/440 (45%), Gaps = 83/440 (18%) Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 AL ++ +I+GGPG GKTT L+ ++I + E I LAAPTG+AA RL+E+ Sbjct: 345 ALKSKVMIITGGPGVGKTT----LINSIINILKSEGVVILLAAPTGRAAKRLSEA----- 395 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 Q P A T+HRL+ ++PG Q +R L +L++DE SM+D+ M Sbjct: 396 TQHP------------AHTIHRLVYSRPG-QDVR--TITKLKCQLLILDEMSMVDVTTMY 440 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 I ALP A + +GD DQL SV G V D+ ++++ +T T + Sbjct: 441 AAISALPSTAALFLVGDIDQLPSVGPGQVFSDLI----------KSQKFPIVTLTEI--- 487 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS 400 +R + S I A IN G F I + S Sbjct: 488 ------------------FRQNNQSSIISNAHRINNG------------FFPILQSSQNS 517 Query: 401 GEDYIAML----EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE 456 D+ + E+A+ + +L+Q R I F + Q+L + G G LN Sbjct: 518 NNDFYFINSDTPEDAI---DKITELVQVRLPKKFSISPFTDIQILSPITRGIVGTKNLNS 574 Query: 457 RIEQFMQQKRKIHRHP---HSRWYEGRPVMIARNDSALGLFNGDIGI--ALD-RGQGTRV 510 +++ + + + + G VM N+ ++NGDIGI +D Q + Sbjct: 575 VLQKVLLPSNSANDELLIWGNIFKIGDKVMQVVNNYDKDIYNGDIGIINTIDHENQNIVI 634 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 F DGN S + E +A+T+HKSQG E+ + L Q P++ R+L+YTA+ Sbjct: 635 NF---DGNKISYDFDEIDEIVLAYAITIHKSQGGEYHTVIIPLMMQHYPMLQRKLIYTAI 691 Query: 571 TRARRRLSLYADERILSAAI 590 TRA++ + + ++ L+ AI Sbjct: 692 TRAKKLVIVVGQKKALNIAI 711 >UniRef50_Q04B55 ATP-dependent DNA helicase, RecD/TraA family n=27 Tax=Lactobacillus RepID=Q04B55_LACDB Length = 796 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 135/470 (28%), Positives = 210/470 (44%), Gaps = 84/470 (17%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA----PTGKAA 209 QK A A+T +S+++GGPG+GKTT + +L L +AD + A PTG+AA Sbjct: 328 QKQAIKNAVTSPVSILTGGPGSGKTTIIDGILLVLKDLADMDEEEAEEAILLAAPTGRAA 387 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 R+ E G A T+HRLLG G N L ++L+VD Sbjct: 388 KRMEEVTGYP-----------------AKTIHRLLGL--GIDNSEEMELNDLEGEILIVD 428 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+D+ + +L+ A+ + ++F+GD+DQL SV AG V D+ Sbjct: 429 EMSMVDIYLFEKLLSAISNVHHLVFVGDKDQLPSVGAGKVFADL---------------- 472 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 + +P C LQ +R DS I LA A+N G AV Sbjct: 473 --IEADFIPT-------------CQLQVVHRQKDDSTIIPLAHAVNEGANPAV------- 510 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 LLQ Y + A + QA + A ++ Q+L A+ G Sbjct: 511 -------LLQKTASYSFIPCRPHAVPSAVEQITQAALKSGF---AADDIQVLGAMYRGDG 560 Query: 450 GVAGLNERIEQFMQ----QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALD 503 G+ LN+ +++ + + + H + R V+ +ND G++NG+IG +A+D Sbjct: 561 GINSLNDTLQRVINPEKGNDKAVEAHGENFRLHDR-VLQLQNDPERGIYNGEIGKVVAVD 619 Query: 504 ----RGQGTRVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 + V + DGN + + L +A+T+HKSQGSEF L L Q Sbjct: 620 PEMLEDEDDEVKLLVNFDGNEVAYTQADLNNLTRAYAITIHKSQGSEFPLVILCLTMQNY 679 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAALFSSR 607 ++ R L+YTA+TRA ++L + +E+ + A+ + ERR+ L L R Sbjct: 680 IMLKRNLLYTAITRASQKLVMVGEEQAFAQAMRVKGNERRTNLVWLLKDR 729 >UniRef50_A8ZLV4 Helicase, RecD/TraA family n=18 Tax=Cyanobacteria RepID=A8ZLV4_ACAM1 Length = 753 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 152/567 (26%), Positives = 251/567 (44%), Gaps = 78/567 (13%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLL--ASQAVSR-GDEP 97 +LS A EGH LP L + L + +++ ++ A V R E Sbjct: 231 VLSESAEEGHCYLPQPELIDRAVKRLALPDYQPKPDQVEYLIHAMISDAELIVERLTHEG 290 Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQK 155 + +LC + + R V + ++ VD + LD+ +D Q+ Sbjct: 291 STKLLCYAPPFFQAEFHLSRRVLQLLAS---SLVVDNERVRAWLDRFMAQTDVSLSKQQQ 347 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 A +A ++R+ +++GGPGTGKT T ++A M I LA+PTG+AA RL+E Sbjct: 348 QAVEMAASQRVVILTGGPGTGKTFTTRTIVALWKAMGKD----IVLASPTGRAAQRLSEV 403 Query: 216 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 G +A T+HRLL P + + + ++ NP+ D +V+DEASM+D Sbjct: 404 TG-----------------HEAKTIHRLLEFDPKTMKFQRNSDNPIPADAVVIDEASMLD 446 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 L + + LI A+ +A+++ +GD DQL SV G VL D+ +T Sbjct: 447 LFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNVLLDL------------------ITSG 488 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK 395 +P + L + +R S I + A IN+G +++V TD Sbjct: 489 RIP-------------IIELTEVFRQAQASHIIRNAHRINQGQFPNLESVSPSPKTDCLW 535 Query: 396 RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 E+ + ++E + DLL P+L Q + Q+LC + G G LN Sbjct: 536 LGAPEPENGVQAIQELIN------DLL-----PELGFQPARDVQVLCPMTRGEVGTRKLN 584 Query: 456 ERIEQFMQ----QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG-QGTRV 510 + ++ + K ++ R R V+ ND +FNGD+G+ D + V Sbjct: 585 QVLQALINPPCPDKPELTRGGLILRVGDR-VLQQVNDYNREVFNGDMGVIEDINLEEIEV 643 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 + ++ S + L E WA+T+HKSQGSE+ L L Q +++R L+YT + Sbjct: 644 TVHYAERSV-SYDLADLNEIGLAWAVTIHKSQGSEYPVVILPLYMQHYIMLSRNLLYTGL 702 Query: 571 TRARRRLSLYADERILSAAIATRTERR 597 TRA++ L + +S AI +R+ Sbjct: 703 TRAKKLAILVGPKNAISMAIRQIKDRQ 729 >UniRef50_D2S7J1 Helicase, RecD/TraA family n=15 Tax=Actinomycetales RepID=D2S7J1_9ACTO Length = 754 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 164/575 (28%), Positives = 257/575 (44%), Gaps = 107/575 (18%) Query: 41 LLSHDAGEGHVCLPLSRL-----ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGD 95 +LS G+GH LP + L E + L+ C++ L ++ ++ + RG Sbjct: 225 VLSEATGQGHCFLPETELVAQAVEVLQVPAGLVGHCLA----LLVADQGVIREELPGRGG 280 Query: 96 EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW-- 153 EP + YL E ++A + A +VD ++D + ++W Sbjct: 281 EPATAVY-----YLVPFHRAEISLAAGLRRLVDA-DVDRMPAFASVDW----TAALSWLG 330 Query: 154 ----------QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 Q+ A +ALT R++V++GGPG GK+ TV +++ +A + RI LAA Sbjct: 331 RRTGVELAAGQQAAVRLALTERVAVLTGGPGCGKSFTVR----SIVTLAAAKGARIVLAA 386 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL 263 PTG+AA RLTE G +A T+HRLL +PG PL Sbjct: 387 PTGRAAKRLTELTGV-----------------EAVTVHRLLELRPGGDAA-FDRDRPLEA 428 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 D++VVDE+SM+DL + ++L+ A+P A ++ +GD DQL SV AG VL D+ A Sbjct: 429 DLVVVDESSMLDLLLANKLVRAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLA-------- 480 Query: 324 ERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVK 383 GT +P L + +R S SG+ A +N G V+ Sbjct: 481 ---------EGTPIPH-------------VRLTEVFRQASRSGVVTNAHRVNAGSFPQVR 518 Query: 384 TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCA 443 + DF L S +D EEA +D++ R + + Q+L Sbjct: 519 GL--DDF------FLFSTDDA----EEAAR---LTVDVVVRRIPARFGLDPRRDVQVLTP 563 Query: 444 LREGPFGVAGLNERIEQFMQQKR--KIHRHPHSRWYE-GRPVMIARND---SALGLFNGD 497 + GP G A LNE +++ + R + + R + G V RND A G+FNG Sbjct: 564 VHRGPAGAAVLNELLQEALTPARPDRAEKRFGGRVFRVGDKVSQIRNDYDKGANGVFNGT 623 Query: 498 IGI--ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 G+ A+D + T + +G L E +A+TVH+SQGSE+ + + + Sbjct: 624 QGVVTAIDPVEQT-LTVVTDEGEQIPYDFGELDELVHAYAVTVHRSQGSEYPCVVIPVTT 682 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 ++ R L+YTAVTRA++ + L R L A+ Sbjct: 683 SAWMMLQRNLLYTAVTRAKQLVVLVGSTRALGQAV 717 >UniRef50_D2B1Q1 Exodeoxyribonuclease V n=9 Tax=Actinomycetales RepID=D2B1Q1_STRRD Length = 738 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 127/452 (28%), Positives = 214/452 (47%), Gaps = 76/452 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q A +AL +++V++GGPG GK+ TV +++ +A ++ ++ LAAPTG+AA RL Sbjct: 343 QAHAVRLALCEKVAVLTGGPGCGKSFTVR----SIVTLARAKKAKVILAAPTGRAAKRLA 398 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E G +A+T+HRLL +PG NPL D++VVDEASM Sbjct: 399 ELTG-----------------HEATTVHRLLQLRPGGD-ATFDRDNPLDADLVVVDEASM 440 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +DL + ++L+ A+ ++F+GD DQL SV AG VL D+ A AE ++ R+ Sbjct: 441 LDLLLANKLVKAIAPGTHLLFVGDVDQLPSVGAGEVLRDLLA-------AE--EEIPRVR 491 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 TH+ +R +SG+ A +N G A++ + Sbjct: 492 LTHI---------------------FRQAQESGVVVNAHRVNTGLPPALEGM-------- 522 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 G+ ++ EE +D++ R + + Q+L + G G Sbjct: 523 -------GDFFLFPCEEPEEIAALTVDVVANRIPRKFGLNPRRDVQVLAPMHRGAAGAGN 575 Query: 454 LNERIEQFMQQKRK--IHRHPHSRWYE-GRPVMIARND---SALGLFNGDIGIALDRGQG 507 LN +++ + R+ R R Y G V RN+ A G+FNG +G+ +D Sbjct: 576 LNNALQEALTPSREGMPERRYGGRVYRVGDKVTQLRNNYDKGAAGVFNGTVGVVVDIKPD 635 Query: 508 TRVWFAMPDGNIKSVQPS--RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 + D + ++V+ + L E +A+++H+SQGSE+ + L + ++ R L Sbjct: 636 DHKLTVLTDED-ENVEYAFDELDELAHAYAVSIHRSQGSEYPAVVIPLATSAWMMLQRNL 694 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERR 597 +YTA+TRA++ + + R L+ A+ TR R Sbjct: 695 LYTAITRAKKLVVIVGSRRALAQAVRTRGAGR 726 >UniRef50_B7J7Z5 Helicase, RecD/TraA family n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J7Z5_ACIF2 Length = 711 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 203/450 (45%), Gaps = 89/450 (19%) Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 R++++++GGPG GKTT LL Q A R+ L APTG+AA R+ E+ G Sbjct: 335 RKLAILAGGPGMGKTT----LLKTCAQSAVASGMRVALCAPTGRAAKRMNEATGM----- 385 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 +A T+HRLL + G R+ NP+ D ++VDE SM+D+ + +L Sbjct: 386 ------------EAKTIHRLLEMKRGGLAERNR-DNPIEADWIIVDEVSMLDMELAWKLF 432 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 DA+P ARV+ +GD DQL SV G VL D+ A Sbjct: 433 DAIPARARVLLVGDPDQLPSVGPGQVLADLIACGKV------------------------ 468 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD---IEKRLLQS 400 ++ L K +R + SGI +A + +G V D +D ++ + Sbjct: 469 -------TVARLSKIFRQQAGSGIPVMATQVIQG----VVPNLDPDSSDCPFVDAECI-- 515 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE----YQLLCALREGPFGVAGLNE 456 GE+ EEA A R I+Q + Q L +R GP G LN+ Sbjct: 516 GEES----EEATAVVVRR------------IVQESEKLGSRMQALAPMRNGPLGTLKLNQ 559 Query: 457 RI-EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALDRGQGTRVWFA 513 + E F + HR R+ G V+ RN+ L ++NGD+G +A++ G V Sbjct: 560 ALREAFNPDAGQPHR---GRFRLGDWVIQTRNNYDLDVYNGDLGTVVAIEEGDEQAVVVD 616 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 D ++ L + + + +T+HKSQG +F A++ + ++ R L+YT +TRA Sbjct: 617 FEDRVVRYEDNEDLRDLDHAYCLTIHKSQGGQFPGVAMVATTAHFVMLKRNLLYTGMTRA 676 Query: 574 RRRLSLYADERILSAAI-ATRTERRSGLAA 602 + L L + +R L A + E+R L A Sbjct: 677 EKHLLLISTKRALQIACKKSGIEKRDTLLA 706 >UniRef50_D2AQX1 Exodeoxyribonuclease V n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AQX1_STRRD Length = 720 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 212/454 (46%), Gaps = 74/454 (16%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A +ALT +SV++GGPG GK+ TV +++AA ++ G + L APTGKAA RL+ Sbjct: 326 QRAAVNLALTSTVSVLTGGPGCGKSYTV-RVIAATVRAMGGT---VTLTAPTGKAAKRLS 381 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E L +LP A T+HRLL QP + +P D++VVDEASM Sbjct: 382 E-----LTRLP------------AMTVHRLLARQPEREEGTLFQQSPAEADLIVVDEASM 424 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +DL + +RL A+P + ++ +GD DQL S+ G+VL D+ R ++ R+ Sbjct: 425 LDLQLATRLTAAIPAGSHLLLVGDSDQLPSIGPGSVLADLL----------RVEEVPRIR 474 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 L + +R DSGI Q A I G+ A+ F ++ Sbjct: 475 ---------------------LARVFRQAQDSGIVQAAHRIRAGELPALPGRGGFWFEEL 513 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 + Q + + + EA+ R D+ ++ Q+LC +R+G G A Sbjct: 514 DDP-DQVADRVVHLATEAIP---RKQDI------------GRDQVQVLCPMRKGATGTAE 557 Query: 454 LNERIEQFMQQKRK---IHRHPHSRWYEGRPVMIARNDSALGLFNGDIG-IALDRGQGTR 509 L R+++ + R+ H S + G VM RN+ G+FNG+ + Q Sbjct: 558 LGRRLQERLNPAREGTAEHWSGPSVFRVGDRVMPIRNNYDKGVFNGETATVTAVNPQDRL 617 Query: 510 VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH-AALILPSQRTPVVTRELVYT 568 V DG + L E ++A++VH+SQGSE+ A I+ ++ R L+YT Sbjct: 618 VEIRTDDGENVTYTFDELDELTHSYAISVHRSQGSEYPFVVAPIVAEAGGVMLRRRLLYT 677 Query: 569 AVTRARRRLSLYADERILSAAIATRTERR-SGLA 601 VTRA+ + L L A+ RR +GLA Sbjct: 678 LVTRAKSWVVLVGQREALELAVHRLGYRRNTGLA 711 >UniRef50_C8P085 RecD/TraA family helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P085_ERYRH Length = 711 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 132/503 (26%), Positives = 231/503 (45%), Gaps = 83/503 (16%) Query: 104 GDRLYLNRMWCNERTVARFFNEVNHA---IEVD--EALLAQTLDKLFPVSDEINWQKVAA 158 GDRLY + +E V + + ++ ++D E+ +A +L D+ Q+ A Sbjct: 268 GDRLYHRTQYDSEVYVTQTLKDFKYSGYDFDLDDLESKIASIESQLRIEFDDT--QREAI 325 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 L + +++GGPGTGK+T ++ ++ L A+ I L APTG+AA RL E Sbjct: 326 ESFLREDVMILTGGPGTGKSTLLSGVVTLL--QANCPWLHITLCAPTGRAAKRLEE---- 379 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 LT+ Q A+T+H +L S + H NPL D+L++DE SM+D + Sbjct: 380 ------LTNVQ-------AATIHSVLKWDLESNKFGMHEENPLETDILIIDEFSMVDTWL 426 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 ++ ++ A +++F+GD+DQL SV +G VLGD+ A S++ T Sbjct: 427 LAHILKASEKVKKLLFVGDKDQLPSVSSGFVLGDLIA--------------SKVFKT--- 469 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 L+++YR + S + LA +N+G + + +D + R Sbjct: 470 --------------ISLERNYRQEAGSEVIDLAVNMNQGLLDV--SNYHRDVRFFDSRYG 513 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 + + +++EA+ R DL ++ Q+L + GP G+ LN + Sbjct: 514 SVKDIVLKVVDEAMQ---RGYDL--------------SDIQVLAPMYSGPAGIDNLNHFL 556 Query: 459 EQFMQ----QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAM 514 ++ QK +I + + EG ++ +N +FNGDIG+ ++ + R+ Sbjct: 557 QKMCNPESPQKAQI-MYGTRIFREGDKILQLKNQPDDFVFNGDIGMLVEV-EAKRLVVDF 614 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 DGN +PS +AM+VHK+QGSE+ L+ +++R L YT TR+ Sbjct: 615 -DGNFVEYEPSSYINITHAYAMSVHKAQGSEYPIVILVAVRDFYRMLSRRLYYTGATRSS 673 Query: 575 RRLSLYADERILSAAIATRTERR 597 + L L + + A+ E + Sbjct: 674 KSLVLVGELEAFNTAVKNHHEAK 696 >UniRef50_A6DHN1 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN1_9BACT Length = 737 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 131/466 (28%), Positives = 207/466 (44%), Gaps = 78/466 (16%) Query: 141 LDKLFP--------VSDEINW-QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 LDK +P ++ E+N QK A + +R+S+I+GGPG GKTTTV + ++Q Sbjct: 315 LDKQYPHAQSEVDFLNSELNTEQKQAVNTSFNKRLSIITGGPGVGKTTTVKE----IVQQ 370 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 + +I+LAAPTG+AA RL E+ G A T+HRLL + S+ Sbjct: 371 SRKHGKKIKLAAPTGRAAQRLGEASGAR-----------------ALTIHRLLMSDSESE 413 Query: 252 -RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH--ARVIFLGDRDQLASVEAGA 308 + L D+LVVDE SM+D+ + +L A+ DH ++ +GD DQL SV G Sbjct: 414 GEFVFNEYKKLKCDILVVDEVSMLDISLARKLFAAI-DHNETHLVLVGDPDQLPSVGPGF 472 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 VL D+ QL LT H + +R S S I Sbjct: 473 VLNDLI-----------ESQLIPLTALH--------------------QVFRQASSSRII 501 Query: 369 QLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP 428 A IN G + ++ + + D D E M+ + +++ R Sbjct: 502 TNAHRINLGQEPDLRQI-EGDHNDFYFIHQDDPEKLFPMISK----------MIKERIPQ 550 Query: 429 DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYEGRPVMIARN 487 I A + Q+L + G G LN +++ + +K SR+ G V+ N Sbjct: 551 KFDISA-KDIQILMPMNRGKCGCEALNLYLQEDLNDIHKKQFNFGKSRFILGDRVIQTVN 609 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 + +FNGD+G +D + + DG S + +A+T+HKSQGSEF Sbjct: 610 NYTKKVFNGDMGYIVDIYNEEKSFIIDFDGLQVSYDFEEAEQIRLAYAITIHKSQGSEFP 669 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 + + + ++ + L+YTA+TRA+ L L + + +S IA + Sbjct: 670 AVIVPMNTSHYIMLKKNLLYTAITRAKELLVLCSSRQAISQCIANK 715 >UniRef50_A6L5S1 ATP-dependent exonuclease V, alpha subunit-helicase superfamily I member n=7 Tax=Bacteria RepID=A6L5S1_BACV8 Length = 753 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 203/443 (45%), Gaps = 71/443 (16%) Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208 DE+ Q + A+ ++ V++GGPGTGKTTT ++AAL M RI LAAPTG+A Sbjct: 317 DEVQLQAIEEAI--RSKVMVLTGGPGTGKTTTTQGIIAALKHMG----LRILLAAPTGRA 370 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 A R++E+ G ++ T+HRLL P R+ NPL D L+V Sbjct: 371 AKRMSEATGM-----------------ESKTIHRLLEFNPKDGYKRNDE-NPLEGDALIV 412 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 DE SMID+ +M+ L+ A+P RV+F+GD DQL SV AG VL DI Sbjct: 413 DECSMIDIILMNNLMKAIPSSMRVVFVGDIDQLPSVGAGNVLRDI--------------- 457 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 + +P + L + +R S I A AIN+G Q Sbjct: 458 ---IESEKIP-------------VIRLTRIFRQAQTSRIVMSAHAINQGRFPDTSNGKQT 501 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 DF I++ EE ++L++ R P Q + Q+L ++ G Sbjct: 502 DFFFIQQ-------------EEPEKVAEEIVNLVKNRL-PKAYSQGVSNIQVLTPMQRGV 547 Query: 449 FGVAGLNERIEQFMQQKR-KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG 507 G A LN ++ + + ++R +S + +G VM RN+ +FNGD+G Sbjct: 548 VGAANLNMALQNALNPSQIALNRGGYS-FRQGDRVMQLRNNYDKDVFNGDLGYVESVDME 606 Query: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 R + + S L E +A T+HKSQGSE+ + + ++ R LVY Sbjct: 607 ERTLLVNFEERQVEYEASELDELTLAYATTIHKSQGSEYPIVVMPVLMTHYVMLQRNLVY 666 Query: 568 TAVTRARRRLSLYADERILSAAI 590 T +TRA++ L ++ LS AI Sbjct: 667 TGITRAKKICVLIGTKKALSFAI 689 >UniRef50_A9KS02 Helicase, RecD/TraA family n=32 Tax=Bacteria RepID=A9KS02_CLOPH Length = 742 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 159/600 (26%), Positives = 266/600 (44%), Gaps = 121/600 (20%) Query: 46 AGEGHVCLPLSRLENNEASHPLLA--TCVSEIGELQNWEECLLASQAVSRGDEPTPMILC 103 +G GHV LP+ L ++ T I L E+ L+ ++ G+E Sbjct: 223 SGNGHVYLPMHSLVGKTCEMLMVEADTVKRHITSLA-LEKKLVVKES---GEE------- 271 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEIN-----WQKVAA 158 +Y + E VA ++++ + ++ A Q +L + E N Q+ A Sbjct: 272 -QHVYSTSFYYMELNVANMLSDLSISYDISPA---QVETRLAKIEQETNLELDEMQRYAV 327 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 A+ + +I+GGPGTGKTTT+ +L + + E + LAAPTG+AA R+ E+ G Sbjct: 328 MEAVRSGLLIITGGPGTGKTTTINTIL----RFFEAEGMDMLLAAPTGRAAKRMKETTGY 383 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLL------GAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 +AST+HRLL + G + NPL DV+++DE S Sbjct: 384 -----------------EASTIHRLLELTKGMDDKDGRMSFERNELNPLEADVIIIDEMS 426 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+D+ +M L+ A+ R+I +GD +QL SV G VL D+ Sbjct: 427 MVDISLMHSLLKAITVGTRIILVGDVNQLPSVGPGNVLRDMI------------------ 468 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 E+ + + +L+K +R S+S I A IN G+ + +DF Sbjct: 469 -----------ESKAF--PVVMLKKIFRQASESDIIVNAHKINSGEHITLDNK-SKDF-- 512 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 L +D ++ ++ L P + + + Q+L +R+G GV Sbjct: 513 ----FLLKRDDVNVIISVIIS--------LVRDKMPKYVNASVYDIQVLTPMRKGELGVE 560 Query: 453 GLNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIARN----------------DSALGL 493 LN+ ++Q++ Q++K H + EG VM +N DS G+ Sbjct: 561 RLNQVLQQYLNPSSQEKKEKEHFGGIFREGDKVMQVKNNYQIAWETKSRYGITIDSGTGV 620 Query: 494 FNGDIGIALDRGQ-GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 FNGD G+ + + +G + + S+L E E +A+T+HKSQGSE+ A++ Sbjct: 621 FNGDTGVIKEINLFAEELTVEFDEGRLVTYPFSQLEELELAYAVTIHKSQGSEY--PAVV 678 Query: 553 LPSQRTP--VVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSSRE 608 LP P + R L+YTAVTRA++ +++ + ++ + I +E R SGL + R+ Sbjct: 679 LPIYSGPRMLFNRNLLYTAVTRAKQCVTIVGSDNMVQSMIDNESELKRYSGLQSRIMERK 738 >UniRef50_A1HT63 Helicase, RecD/TraA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT63_9FIRM Length = 719 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 130/420 (30%), Positives = 191/420 (45%), Gaps = 89/420 (21%) Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL---GAQPGSQRLR 254 +I LAAPTG+AA RL+E+ G+ +A T+HRLL G + G+ Sbjct: 365 KIVLAAPTGRAAKRLSETTGR-----------------EAQTVHRLLEAGGGEDGAPYFA 407 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + NPL DV++VDE SM+D+ +M+ L+ A+PD R++ +GD DQL +V G+VL D+ Sbjct: 408 RNEDNPLDADVVIVDEVSMMDIVLMNHLLRAIPDGCRLVLVGDVDQLPAVGPGSVLKDVI 467 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 + RL + L + +R +S I A I Sbjct: 468 -------------RCGRL------------------PVVRLTEVFRQAGESIIVHNAHRI 496 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 NRG + F +I +G++ +A EA+ R P Sbjct: 497 NRGLVPDCRKDANFQFREI------AGDEAVA---EAIVRLCR-------EELPAAGYDV 540 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY--------EGRPVMIAR 486 + Q+L + GV LN ++ + P W EG VM R Sbjct: 541 LRDVQVLSPMHRLVCGVENLNRLLQGALNPP-----DPAKGWIQAVNQTLREGDKVMQIR 595 Query: 487 NDSALGLFNGDIGI--ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 N+ G+FNGDIG A+D G V PDG + + L E + +AM+VHKSQGS Sbjct: 596 NNYTKGVFNGDIGFIAAIDDGV---VIVRYPDGPVMY-ERGELDELQLAYAMSVHKSQGS 651 Query: 545 EFDHAAL-ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-RTERRSGLAA 602 E+ L ++P R ++ R L+YTAVTRA+ R+ L + L+ A+A RT RR L A Sbjct: 652 EYPVVILPLVPGHRI-MLQRNLLYTAVTRAKERVILLGSKAALNTALANDRTRRRYSLLA 710 >UniRef50_D2RL74 Helicase, RecD/TraA family n=2 Tax=Acidaminococcus RepID=D2RL74_ACIFE Length = 721 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 188/616 (30%), Positives = 270/616 (43%), Gaps = 107/616 (17%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEA 63 L E VE R D A + DEH + A + L AG+GH C+P S L N A Sbjct: 185 LAEDVEGIGFRTADA-LARNLGMDEHGDERIRAGIHYTLLQGAGQGHTCVPDSWLVGNAA 243 Query: 64 SHPLLATCVSEIGEL--QNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 +L E+ ++ Q + LL +A RGD +C YL R E R Sbjct: 244 R--VLQVDPLEVRQVFDQLLRDNLL--RAEDRGDH-----VCVYPEYLYR--AEEGVAHR 292 Query: 122 FF---NEVNHAIEVDEALLAQTL--DKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + VN +VD + + D+ ++ E Q A ++ + V++GGPGTG Sbjct: 293 LLALRDNVNALWKVDYQKIIREWERDERIRLAPE---QAEAVKASVDHGVFVLTGGPGTG 349 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTT V +L+ + Q C+I LAAPTG+AA RL+ES GK Sbjct: 350 KTTVVKGILSVMEQAG----CKILLAAPTGRAAKRLSESAGKP----------------- 388 Query: 237 ASTLHRLLGAQP---GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 A T+HRLL P G + NPL D ++VDEASM+D+ +M L+ ALP R+I Sbjct: 389 ALTVHRLLEYTPNGEGDSFWGRNEDNPLEADAVIVDEASMMDIVLMYNLLKALPLGCRLI 448 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD DQL SV G+VL DI + +GT + Sbjct: 449 LVGDVDQLPSVGPGSVLQDI-----------------------IRSGTM--------PIV 477 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L+ +R S I + A IN+G + ++DF E + YI L LA Sbjct: 478 RLENVFRQAELSPIVRNAHRINQGLMPQWEG--EKDFRFREFATEEETMHYIVDLYVHLA 535 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHR 470 AR D I Q+L + + GV LN ++ M +++ +R Sbjct: 536 ----------ARQPQDAI-------QVLTPMHKNLCGVENLNNMLQARMNPPSPEKQEYR 578 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPD---GNIKSVQPSRL 527 EG VM RN+ +FNGDIG + QG V PD G + + + + Sbjct: 579 GSFLLLREGDKVMQIRNNYDKNVFNGDIG-RICSIQGAHVTVDFPDRAEGEAVTYEGAEV 637 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 + +AM+VHKSQGSE+ + L ++ R L YTA+TRA++++ L R L Sbjct: 638 SDLRLAYAMSVHKSQGSEYAVVLMPLVLSHYILLQRNLFYTAITRAKKQVYLAGSRRALR 697 Query: 588 AAIAT-RTERRSGLAA 602 A+ RT +R L A Sbjct: 698 TAVENDRTRKRYSLLA 713 >UniRef50_C1MI09 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MI09_9CHLO Length = 1068 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 147/498 (29%), Positives = 214/498 (42%), Gaps = 116/498 (23%) Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE--SLG 217 +AL ISV++GGPGTGKT V +A + A G + + + APTG+AA RL E S G Sbjct: 562 LALREPISVLTGGPGTGKTFAVH--IAVRLWRAMGRK--VLMCAPTGRAAQRLAEIASAG 617 Query: 218 KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ--------------------RLRHHA 257 +++ P +ST+HRLL + G + + Sbjct: 618 RSMSS-----------PVQSSTIHRLLEQRAGKRGGAGEEDDDPSDALEFAWKGKFARCK 666 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 +PL DV+VVDE+SM+DLP+ + L+DA+ A+V+F+GD DQL SV G+VL D+ Sbjct: 667 ASPLDADVVVVDESSMLDLPLCAALLDAVKPDAQVVFVGDADQLPSVGPGSVLRDV---- 722 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 L VPA L + +R SGI + A ++N G Sbjct: 723 --------------LQSRAVPA-------------VQLSEVFRQAEQSGIIRAAHSMNAG 755 Query: 378 DKTAVKTVFQQDFTDI------------EKRLLQSGE-------------DYIAMLEEAL 412 V T D T QSG ++ + E+ Sbjct: 756 RIPEVPTRRWDDATRTIVGPGPGGGGGSSSNANQSGPLSYQTETWEGADCVWVTVPEDGE 815 Query: 413 AGYGRYLDLLQARAEPDLI-IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK------ 465 Y L L A P L + + Q+L R G + LN F+Q++ Sbjct: 816 NAYEGALAALFDGALPALDGLNPTTDLQVLTPFRRGVASTSQLN----VFLQERLNPPSD 871 Query: 466 -RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI--ALDRGQGTRVWFA--------M 514 R + + EG V+ RND +FNGD+G A++ RV F + Sbjct: 872 GRLETKAGEITFREGDRVLQQRNDYVKEVFNGDLGTVDAVNGDGSVRVVFGGAAAAAALV 931 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 P + + S L + WA+TVHK+QGSE+ L L P++ RELVYTA +RA+ Sbjct: 932 PAREV-TYSRSELRDLLPAWALTVHKAQGSEYKAVVLCLAENHRPLLRRELVYTAASRAK 990 Query: 575 RRLSLYADERILSAAIAT 592 L + + ER L A+ T Sbjct: 991 EVLVILSPERALRTAVQT 1008 >UniRef50_C8X8R3 Exodeoxyribonuclease V n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8R3_NAKMY Length = 653 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 126/443 (28%), Positives = 199/443 (44%), Gaps = 83/443 (18%) Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 V+D + Q A A+A +S+++GGPGTGK+ TV A++++ I LAAPTG Sbjct: 234 VTDLDDVQAGAVALAAKHGVSLLTGGPGTGKSRTVE----AIVKLCTEVEASIALAAPTG 289 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP-----GSQRLRHHAGNPL 261 +AA RL E G A A+T+HRLL A+P S AGNP+ Sbjct: 290 RAAKRLEELAGSA-----------------ATTVHRLLDARPPDKGSTSYVFDRDAGNPI 332 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 ++VVDE SM+D+ + + LI A+ D A ++ +GD QL S+ G VLGD+ Sbjct: 333 EAKMIVVDETSMLDVELGAALISAIADGAHLVIVGDPAQLPSIGPGRVLGDLI------- 385 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 ++ +L + L K YR I +LA A+ G+ A Sbjct: 386 ----------------------DSGAL--PVTELTKLYRQDEGGTIARLAIAVRAGELPA 421 Query: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 V + + ++ + ++ +++ R D + ++ Q++ Sbjct: 422 VADPTHEVVIVPARGSEEAAHRVVQVVTDSIP---RVFDCER------------DQIQVV 466 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND---SALGLFNGDI 498 + GP G LN ++ + R + G V+ N G NG++ Sbjct: 467 TPVHRGPAGTQALNRALKAALNPGTGTVRG----FDPGDRVVATANHLDAEPTGYANGEV 522 Query: 499 GIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 G L G T RV F G + L + WA+TVH++QGSE++ +LP + Sbjct: 523 GTVLTCGDNTIRVSFT---GGEAEISGKALGDLLHGWAITVHRAQGSEWEAVVAVLPPEA 579 Query: 558 TPVVTRELVYTAVTRARRRLSLY 580 +++R LVYTA+TRARR LS+ Sbjct: 580 GNMLSRPLVYTALTRARRHLSVV 602 >UniRef50_D2S6B9 Exodeoxyribonuclease V n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S6B9_9ACTO Length = 659 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 205/440 (46%), Gaps = 96/440 (21%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A A L +S+++GGPGTGK+ TVA A++++ + + LAAPTG+AA RL Sbjct: 270 QKQAVAQVLGAGVSLLTGGPGTGKSRTVA----AVVKLLQAKGAEVALAAPTGRAAKRLE 325 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E LTD A T+HRLLGAQ S + PL DV+VVDEASM Sbjct: 326 E----------LTDHP-------AVTVHRLLGAQGTSGGFARNEEWPLDADVVVVDEASM 368 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D+ + + L++A D ++ +GD QL S+ G VLGD+ ++G Sbjct: 369 LDVELTAALLEACQDGTHLLLVGDPAQLPSIGPGHVLGDLI---DSGV------------ 413 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT-------VF 386 VP TE +L YR I +LA A+ G+ V + V Sbjct: 414 ---VPV---TELTTL----------YRQAEGGAIARLANAVRGGELPPVDSPDREVVVVP 457 Query: 387 QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE 446 + KR++Q D I R L R +P + Q++ + Sbjct: 458 AGGSAEAAKRVVQLVTDSIP----------RAL-----RIDPATV-------QVVTPVHR 495 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWY--EGRPVMIARNDSAL---GLFNGDIGIA 501 GP G LN+ + K +++ + W G V+ N L G NG+ G+ Sbjct: 496 GPAGTIELNKAL------KARLNPGDGTVWGFDVGDRVVATANHLDLEPTGFANGETGVV 549 Query: 502 LDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 G GT V FA G + +V S + + WA+TVH++QGSE+ ++LP + + Sbjct: 550 TGTGDGTLDVDFA--SGPV-TVSGSAMSDLRHGWAITVHRAQGSEWPGVVVVLPPEAGGM 606 Query: 561 VTRELVYTAVTRARRRLSLY 580 ++R LVYTA+TRA+R LS+ Sbjct: 607 LSRPLVYTALTRAQRHLSIV 626 >UniRef50_C7Q0I8 Helicase, RecD/TraA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0I8_CATAD Length = 740 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 141/495 (28%), Positives = 215/495 (43%), Gaps = 82/495 (16%) Query: 107 LYLNRMWCNERTVARFFNEVNHA---IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALT 163 ++ + ER +A V HA + V A+TLD P D Q+ A +ALT Sbjct: 291 VFAKTLHNTERALATAVTRVLHADSDVPVAARRRAETLDADHP--DLHEGQRAAVGMALT 348 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 +SV++GGPG GK+ TV K +A +++ G R+ LAAPTGKAA RL E G Sbjct: 349 HTVSVLTGGPGCGKSHTV-KTIAQIVKACGG---RVTLAAPTGKAAKRLAELTGMR---- 400 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 A T+HRL+ P + +PL D++VVDEASM+D+ + +L Sbjct: 401 -------------AMTVHRLVADLPDADPDALFEDSPLMADLIVVDEASMLDVFLGLKLA 447 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 +P ++ +GD DQL S+ G+VL D+ R ++R THV Sbjct: 448 RQVPPGTHLLLVGDVDQLPSIGPGSVLKDLL----------RVPDVARTELTHV------ 491 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 +R G S I A I G +T E Sbjct: 492 ---------------FRQGEGSSITTNAHLIRAGRMPNPRT----------------SEF 520 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 + +E+ R L++ R + ++ Q+L A R G G L R+++ + Sbjct: 521 WFDEVEDPAQVAERILEIATGRIPASHGVPP-SDVQVLAATRRGATGTVELGRRLQERLN 579 Query: 464 ---QKRKIHRHPHSRWYEGRPVMIARND---SALGLFNGDIGIALDRGQGTR-VWFAMPD 516 + H S + G VM RND + G+FNG + D +R V D Sbjct: 580 PADPDKAEHWAGTSVFRIGDKVMPIRNDPNKGSAGIFNGTTAVVSDLDPQSRTVQLRTDD 639 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP-VVTRELVYTAVTRARR 575 G+I L + +A++VH+SQGSE+ + L ++ P ++ R L+YT VTRA++ Sbjct: 640 GDIAVYDFDELDDLLHAYAISVHRSQGSEYPYVVAPLTTETGPLMLYRNLLYTLVTRAQK 699 Query: 576 RLSLYADERILSAAI 590 + L R L A+ Sbjct: 700 LVVLVGQRRALEIAV 714 >UniRef50_A8SRT9 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SRT9_9FIRM Length = 797 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 142/523 (27%), Positives = 226/523 (43%), Gaps = 116/523 (22%) Query: 119 VARFFNEVNHA-----IEVDEALLAQTLDKLFP-VSDE-----INWQKVAAAVALTRRIS 167 V ++ E+N A +++D + +DK+ V DE + Q+ A A+ ++ Sbjct: 330 VGDYYTELNSARMLTALDIDFSKAKLNIDKVIKTVEDEEKIQLADAQRQAVEKAVGHGVA 389 Query: 168 VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 VI+ G T ++ LI++ + R I LAAPTG+AA R+TE+ G A Sbjct: 390 VIT----GGPGTGKTTIINVLIRIYESLRMNIVLAAPTGRAAKRITEATGYA-------- 437 Query: 228 EQKKRIPEDASTLHRLLGAQPGSQR-------LRHHAGNPLHLDVLVVDEASMIDLPMMS 280 A T+HRLL G + NPL DV+++DE SM+D + Sbjct: 438 ---------AQTIHRLLELNGGVDDDGDSVYVFARNESNPLEADVIIIDEMSMVDSGIFY 488 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 L+ A+ R++ +GD +QL SV G VL DI A +G Sbjct: 489 SLLKAVTPGTRLVLVGDSNQLPSVGPGNVLKDIIA-----------------SGVF---- 527 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS 400 + +L + YR G DS I A IN G +K +DF I + Sbjct: 528 ----------HVSVLDRIYRQGKDSDIIGNAHKINAGVHIEIKNK-SEDFFFIPRN---- 572 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 Y ++ E L +L + P ++ Q+L +R+ G+ LN ++++ Sbjct: 573 --GYNEIISE--------LKVLMTKQLPSFFKVNSSDIQVLTPMRKFDLGIENLNRQLQE 622 Query: 461 FMQQKRKIHRHPHSR----WYEGRPVMIARND-----------------SALGLFNGDIG 499 + K + + R + +G VM +N+ +G+FNGDIG Sbjct: 623 ILNPSGK-GKPEYVRGDVVFRQGDKVMQVKNNYKQEWKIMDPTGRFAKEEGVGVFNGDIG 681 Query: 500 IAL---DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 D Q V F DG ++L E E +A+T+HKSQGSE+ ++LP Sbjct: 682 FVRTVDDYDQKIIVEF--DDGRQSEYPYNQLEELEHAFAITIHKSQGSEY--PVVVLPLL 737 Query: 557 RTP--VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 R P ++ R L+YTAVTRARR + + + + +A I E++ Sbjct: 738 RCPPKLLNRNLLYTAVTRARRCVVIVGNIGLANAMIDNEDEQK 780 >UniRef50_A5N3G4 Predicted exodeoxyribonuclease n=26 Tax=Clostridium RepID=A5N3G4_CLOK5 Length = 750 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 129/454 (28%), Positives = 200/454 (44%), Gaps = 111/454 (24%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 ++ +IQ+ + ++ +AAPTG+AA R++E+ + +A T+HRL Sbjct: 349 IINCMIQLFEKSNLKVLMAAPTGRAAKRMSEATKR-----------------EAKTIHRL 391 Query: 244 L--GAQPGSQRLRHHAG--NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 L G + + L G +PL DV+++DEASMID+ MM+ L+ A+ R+I +GD + Sbjct: 392 LEIGVESDDEALFFSRGEESPLQCDVVIIDEASMIDIVMMNNLLKAISLKTRLIIVGDSE 451 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL----L 355 QL SV G VL D L DS C+ L Sbjct: 452 QLPSVGPGNVLRD-----------------------------------LIDSRCIKVVRL 476 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 ++ +R +S I A IN G+ + +DF +I LE + Sbjct: 477 KEIFRQSRESMIIVNAHKINLGEMPILNKKL-KDFY------------FIKALE-----F 518 Query: 416 GRYLDLLQARAEPDLIIQAFNEY-------QLLCALREGPFGVAGLNERIEQFMQQKRKI 468 L+LL A L AFN + Q+L +R+G GV+ LN ++++ + K Sbjct: 519 SNILNLLVELANKRL--PAFNGHWDKMKHIQILSPMRKGILGVSNLNRKLQEALNPKSNN 576 Query: 469 HRHPHSR---WYEGRPVMIARNDSAL--------------GLFNGDIGIALDRGQGTRVW 511 + + R + G VM +N+ L G+FNGD G D + Sbjct: 577 KKEKYFRDMIFRVGDKVMQIKNNYTLKWTVISGEKEEKGMGIFNGDFGYIEDIDEEKDTV 636 Query: 512 FAMPDGNIKSVQPSR-LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV--VTRELVYT 568 + D + V S L E + + +T+HKSQGSEF +I+P PV + R L+YT Sbjct: 637 TVIFDEEKRVVYDSICLDELDLAYGITIHKSQGSEF--PVIIVPMFMGPVLLMNRNLLYT 694 Query: 569 AVTRARRRLSLYADERILSAAIATRT--ERRSGL 600 A+TRA+ + L D R L+ I+ ER S L Sbjct: 695 AITRAKEMVVLVGDLRALTFMISNNKSFERYSLL 728 >UniRef50_C3CTA5 Helicase RecD/TraA n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTA5_BACTU Length = 750 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 123/465 (26%), Positives = 211/465 (45%), Gaps = 79/465 (16%) Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 FP++++ Q A +AL IS+++GGPGTGKT T ++ + ++ + I L AP Sbjct: 344 FPLAEK---QAEAVYMALLNGISILTGGPGTGKTQTTNTIVQCIKKV--NPKATILLLAP 398 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHHAGNPLH 262 TGKA+ R+TE LT+ DAST+HR LG G++ L N L Sbjct: 399 TGKASKRMTE----------LTNM-------DASTIHRGLGLNSFGGTKEL-----NQLT 436 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 D +VVDE SM+D + ++L++ + ++ R++F+GD DQL SV G +L D+ Sbjct: 437 SDFIVVDEFSMVDAYLANKLVNNIGENTRILFVGDVDQLPSVGPGLILRDL--------- 487 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 + +P + L K +R +S I + + G T Sbjct: 488 ---------IDSGKIP-------------VTKLDKVFRQAENSQIVMNSYKVIHGKTTKD 525 Query: 383 KTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLC 442 + D T ++ +Q ++ + + ++ + R +D + ++ LL Sbjct: 526 PDGIRFDHTKGDEYFIQE-KNSLVIRKKIIESIQRMIDKYHYK---------LDDICLLS 575 Query: 443 ALREGPFGVAGLNERIEQFM---QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG 499 +R G G LN I+ R + + G V+ N+ LG++NG++G Sbjct: 576 PMRIGDLGTDELNRAIQLHFNPPNSSMDYQRDEFTTFRTGDKVIHTENNKDLGVYNGEVG 635 Query: 500 I--ALDRGQGT-RVWFAMPD-GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 + ++ +G +V PD + + + + + +A+T+HKSQGSEF + Sbjct: 636 VVSSIYTYEGEFKVDVEYPDREDPVAYTEKDMEQLQLAYAITIHKSQGSEFPIVIMPFHE 695 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAI--ATRTERRS 598 + + TR L+YT TRA++ L DE L+ I + T R S Sbjct: 696 SQLSMSTRNLIYTGRTRAKKILISIGDEETLNKGILKVSDTNRNS 740 >UniRef50_B0S3H7 ATP-dependent exodeoxyribonuclease alpha subunit n=2 Tax=Finegoldia magna RepID=B0S3H7_FINM2 Length = 743 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 122/429 (28%), Positives = 185/429 (43%), Gaps = 101/429 (23%) Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHH 256 I LAAPTG+AA RL+ES E+A T+HR+LG P H Sbjct: 360 IILAAPTGRAAKRLSESCN-----------------EEAKTIHRILGYIPVEDGTIFDHD 402 Query: 257 AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY 316 NP+ D++++DEASM+D+ + L+ AL + RV+F+GD DQL SV+AG VL D+ Sbjct: 403 EDNPIDCDLIIIDEASMMDIFIADSLLRALDSNTRVVFVGDCDQLPSVQAGNVLNDL--- 459 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 + G E +++ L K +R +S I A IN Sbjct: 460 --------------------IECG---EITTIK-----LTKIFRQAQNSNIIVNAHRINN 491 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE-EALAGYGRYLDLLQARAEPDLIIQAF 435 G+ L + G+D+ + E + LDL R F Sbjct: 492 GEFPI---------------LNEKGKDFFFIEENDPERAKQTILDLCAQRLPNFYKKDEF 536 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR---WYEGRPVMIARN----- 487 ++ +L +++ G LN +++ + K + R + VM +N Sbjct: 537 DDIIVLTPMKKSSCGTKELNTALQEVLNPKTPMTEEIEQRDRIFRLNDKVMQIKNDYTKE 596 Query: 488 ---DSALGLFNGDIGIALDRGQGTRVWFAMP---------DGNIKSVQPSRLPEHETTWA 535 D A+G+FNGDIG RV + P D S ++A Sbjct: 597 FIDDDAMGVFNGDIG---------RVTYVDPIDETVDVLFDDKTASFTKKECDGLTLSYA 647 Query: 536 MTVHKSQGSEFDHAALILPSQRTP--VVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +T+HKSQGSEF +++P + P ++TR L+YTA+TRAR + L +IL I+ Sbjct: 648 ITIHKSQGSEF--PIVVIPVTQAPFMLLTRNLLYTAITRAREIVVLVGSLKILRQMISNN 705 Query: 594 T--ERRSGL 600 +R SGL Sbjct: 706 KIMKRNSGL 714 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 148/502 (29%), Positives = 220/502 (43%), Gaps = 93/502 (18%) Query: 105 DRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTR 164 DRL++ M ++T N + +D ++ K+ DEI Q A A T Sbjct: 581 DRLWVQLMQARKQTG-------NPELSID---VSHIEKKIHMEYDEI--QADAIRKAATS 628 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 ++ +++GGPGTGKTTTV +LAA +I LAAPTG+AA RL E+ G Sbjct: 629 KVMILTGGPGTGKTTTVQGILAAYRAFG----LKILLAAPTGRAAKRLEETTGM------ 678 Query: 225 LTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 +A T+HRLL +P G Q+ H PL DVLVVDE SMID+ +M+ L Sbjct: 679 -----------EAKTIHRLLEYKPPEGYQKNEEH---PLEGDVLVVDECSMIDIILMNAL 724 Query: 283 IDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTG 342 + A+P R + +GD DQL SV AG VL D+ Sbjct: 725 LKAVPPGMRFVLVGDVDQLPSVGAGNVLRDMM---------------------------- 756 Query: 343 TEAASLRDSLCL----LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 DS C L + +R S I A IN G + DF IEK Sbjct: 757 -------DSGCFPVIRLTRIFRQAQTSRIVMNAHRINEGRLPDISNGNDADFFFIEK--- 806 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 EE ++L+Q + ++ Q+L +++G G A LN + Sbjct: 807 ----------EEPEEAVAEIVNLVQQKLS-RFYHTPVSQIQVLTPMQKGAVGAANLNLAL 855 Query: 459 EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGN 518 ++ + + + R + VM +N+ +FNGDIG G R DG Sbjct: 856 QEALNPQGEGLRRSGFVYRMDDKVMQIKNNYDKEVFNGDIGFIESVDVGARTLKVSFDGR 915 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 I S L E +A T+HK+QGSE+ + + ++ R L+YT +TRA++ L Sbjct: 916 IVEYDASELDELVHAYATTIHKAQGSEYPIVVMPVLMNHYVMLQRNLIYTGITRAKKILV 975 Query: 579 LYADERILSAAI--ATRTERRS 598 + ++ L+ A+ T T+R + Sbjct: 976 MVGTKKALAYAVRNVTVTKRNT 997 >UniRef50_Q1J056 Helicase RecD/TraA n=3 Tax=Deinococcus RepID=Q1J056_DEIGD Length = 726 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 171/594 (28%), Positives = 247/594 (41%), Gaps = 134/594 (22%) Query: 28 AGDEHPAVTLAAALLSHDAGE--GHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECL 85 A D+ +T AA AG+ GH LP +R E + T VS E+ Sbjct: 239 AQDDPRRLTAAAVYALQQAGQQGGHAFLPRARAERGVLHY----TRVSP-------EQAR 287 Query: 86 LASQAVSR----GDEPTPMILCGD-RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 LA + + D+PTP G+ R+YL + E+ +A L +T Sbjct: 288 LAVETATELGRLADDPTP---AGESRIYLPHVLRTEKKLAG---------------LIRT 329 Query: 141 LDKLFPVSDEINWQ-KVAAAVALTR------------RISVISGGPGTGKTTTVAKLLAA 187 L P E W V AA L+ R+ V++GGPGTGK+T A Sbjct: 330 LLATPPAGAE--WAVPVGAAQGLSEEQARVLQLLEDHRLVVLTGGPGTGKSTATR----A 383 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 + +A+ + L APTGKAA RL E G+ AST+HRLLG Sbjct: 384 VADLAERLGLEVGLCAPTGKAARRLGEVTGR-----------------PASTIHRLLGYG 426 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 P RH+ P D+L+VDE SM +M L+ A+ ARV+ +GD DQL V++G Sbjct: 427 PAG--FRHNHLEPAPYDLLIVDEVSMTGDALMLSLLAAVAPGARVLLVGDTDQLPPVDSG 484 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 L I A + RQ + E +R + LL Sbjct: 485 LPLLAIAQTAPTVRLSTVYRQAA-------------ENPIIRAAHGLLH----------- 520 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 GQ A + GD + D T+ E + G +A++ L G GR Sbjct: 521 GQ---APSWGDP-------RLDLTETEPDV---GARRVALMVRDLGGPGR---------- 557 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 Q+L +R+GP GV LN ++ R G V+ +N Sbjct: 558 ----------VQVLTPMRKGPLGVETLNRHLQALFNPGEGGTRIADGEARPGDVVVQTKN 607 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 D +FNG +G L + +G R+ DGNI + + L + +A+TVH++QGSE+ Sbjct: 608 DYQNEVFNGTVGTVL-KAEGGRLTVDF-DGNIVELAGAELFNLQLGYALTVHRAQGSEWP 665 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRR-LSLYADERILSAAIATRTERRSGL 600 +L P+++R L YTA+TRAR R L++ + AA R ER + L Sbjct: 666 TVLGVLHEVHMPMLSRNLAYTALTRARERFLAVGSASAWEKAAGRQREERNTAL 719 >UniRef50_B0P898 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0P898_9FIRM Length = 757 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 140/517 (27%), Positives = 217/517 (41%), Gaps = 108/517 (20%) Query: 100 MILCG------DRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT-LDKLFPVSDEIN 152 MIL G D +YL R++ E AR + + L+ Q ++ + PV +++ Sbjct: 280 MILNGAIVSVKDNIYLPRVFAQEDETAR---------RIAQRLVTQMPVEHIAPVLEQVK 330 Query: 153 ---------WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM-ADGERCRIRLA 202 Q+ A A +SVI+G PGTGKTT + +L ++ DG +I L Sbjct: 331 VEMGLRLSAQQEAAVYAAFRHGLSVITGSPGTGKTTVLRTILEVYRRLHPDG---KIALM 387 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG-AQPGSQRLRHHAGNPL 261 APTG+A+ R++ES G EDA TLH LG + R+ PL Sbjct: 388 APTGRASRRMSESTGF----------------EDARTLHSGLGLTSEEDEGSRNRKSEPL 431 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 D+++VDE SM+D+ + + + + +AR++ +GD DQL SV AG V +I Sbjct: 432 SADLIIVDEFSMVDMWLAEKFFERMKANARIVLVGDPDQLPSVGAGNVFREI-------- 483 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 + VP + +L + +R DS I A IN G+ Sbjct: 484 ----------IETQIVP-------------VTVLDQIFRQSKDSLIAYNAKFINEGN--- 517 Query: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 K + DF + S ED + E RY +Q Q+L Sbjct: 518 TKLFYGPDFVFVSG---DSQEDTAEKITE------RYCLEIQE--------SGIENVQIL 560 Query: 442 CALR-EGPFGVAGLNERIEQ----FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 R EG LNE I + F + +I P R +M +N + NG Sbjct: 561 SPFRSEGAASSEQLNETIRELVNPFRSAEEEIKFGPRIFRVNDR-IMQTKNTEKVS--NG 617 Query: 497 DIGI---ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 D+G D QG ++ G L + +A T+HK+ GSE++ + L Sbjct: 618 DLGFIRYIKDTDQGKKIGMDFGAGRTLEYGVDDLSNVDLAYATTIHKAMGSEYETVIMPL 677 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 T ++ R L+YT +TRA++R+ L +++L AI Sbjct: 678 LKAHTIMMYRNLLYTGITRAKKRVVLIGQKQVLFMAI 714 >UniRef50_C5SD04 Helicase, RecD/TraA family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD04_CHRVI Length = 694 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/162 (45%), Positives = 100/162 (61%), Gaps = 21/162 (12%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A A L ++++++GGPG GKTT V LL L + R+RL APTG+AA RL+ Sbjct: 331 QRAAIARVLAAKVAILTGGPGVGKTTVVNSLLLLL----QAKHTRVRLCAPTGRAAKRLS 386 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 ES G+ +A T+HRLL P + +H A NPL LD+LVVDE SM Sbjct: 387 ESTGR-----------------EARTIHRLLEFDPETFGFKHTADNPLDLDLLVVDEVSM 429 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 +D+ +M++L+ A+PDHA V+ +GD DQL SV GAVL D+ A Sbjct: 430 VDVSLMNQLLRAVPDHAGVLLVGDVDQLPSVGPGAVLADLIA 471 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQ--QKRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 + Q+L + G G LN ++ + + ++ R + + G V+ ND +F Sbjct: 520 DIQVLTPMNRGGLGARALNGALQAALNPTTQPRLERFGWT-YAPGDKVIQLVNDYDKEVF 578 Query: 495 NGDIG--IALDRGQGTRVW-FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 NGDIG +++D +G V F +G + L +A ++HKSQGSE+ + Sbjct: 579 NGDIGRVVSIDLEEGEVVIDF---EGRTVVYETGELDALALAYATSIHKSQGSEYPAVVI 635 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 L +Q ++ R L+YTAVTR RR + L A R L+ A+ Sbjct: 636 PLATQHYTLLQRNLLYTAVTRGRRLVVLIAQPRALAMAV 674 >UniRef50_A8ZX97 Helicase, RecD/TraA family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX97_DESOH Length = 736 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 118/417 (28%), Positives = 181/417 (43%), Gaps = 65/417 (15%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 L+ A+ + +G ++ LAAPTG+AA RL E GK +A TLHRL Sbjct: 355 LIRAIAAVFEGAGKKVMLAAPTGRAAKRLCEVSGK-----------------EAVTLHRL 397 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 LG + N L DV+VVDEASM+D+P+ L+ A P A ++ +GD QL S Sbjct: 398 LGIGFEETPFLKNQDNQLRADVIVVDEASMVDIPLFFALLSATPVTAGLVLVGDVYQLPS 457 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V G VL D+ A + SL + L + +R Sbjct: 458 VGPGNVLRDLIA-----------------------------SGSL--PVFELTQVFRQAE 486 Query: 364 DSGIGQLAAAINRGDK----TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 S I + A I R + +A F +EK ++ E+ A ++ Sbjct: 487 QSAIVRNAHRIRRSEPPDLASAAAISPDTGFWFVEK---ETQEEIAATIK---------- 533 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 DL +R + N+ Q+L + +GP G LN ++Q + ++ + + G Sbjct: 534 DLCVSRLPRTFGLDPANDIQVLTPMHKGPLGTIALNHALQQALNPDGPGNKETLAGFRPG 593 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 VM RN+ +FNGDIG R+ DG I E +A+TVH Sbjct: 594 DKVMHLRNNYTKEVFNGDIGTVAAVDTRRRMIDVNYDGRIVEYDVVEADELTLAYAITVH 653 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 KSQGSE+ L + ++ ++ R L YTA+TRAR+ + L + ++ A+ T + Sbjct: 654 KSQGSEYPAVVLPMTTRHYTMLERNLFYTAMTRARQLVVLVGTSKAVAVAMRKNTPK 710 >UniRef50_A6NZ80 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZ80_9BACE Length = 738 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 126/429 (29%), Positives = 186/429 (43%), Gaps = 83/429 (19%) Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ--PGSQRL--RHH 256 LAAPTG+AA RL E G +A T+HRLL Q PG+ +L H Sbjct: 372 LAAPTGRAAKRLGELCGM-----------------EAYTIHRLLETQFDPGTGKLVFAHD 414 Query: 257 AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY 316 PL D ++VDE SM+D+ +M L+ AL R++ +GD DQL SV G VL D+ Sbjct: 415 ESEPLKADAVIVDETSMVDVTLMRALLSALRGECRLVLVGDPDQLPSVGPGNVLSDL--- 471 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 + VP L + +R + S I A ++NR Sbjct: 472 ---------------IRSGRVPT-------------VRLTEIFRQAAQSAIVMNAHSVNR 503 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 G+ + +DF + + D I ++L + R + I A + Sbjct: 504 GELPDLHNSAAKDFFFLRRTDPVRVADTI-------------VELCKTRLPEKMGIPA-D 549 Query: 437 EYQLLCALREGPFGVAGLNERIEQFM---QQKRKIHRHPHSRWYEGRPVMIARN------ 487 + Q+L R G A LN I++ + Q + R + EG VM RN Sbjct: 550 QIQVLSPTRRHTTGTASLNRSIQEAVNPAQPGKAERRFGEYIFREGDRVMQVRNNYDIMW 609 Query: 488 ------DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 D+ +G+FNGDIG+ + V +G P L E E +A+TVHK+ Sbjct: 610 RGKDNTDTGMGIFNGDIGVIVKVDNRDEVITVDFEGRTVEYTPDMLMELEPAYAVTVHKA 669 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA-TRTERR-SG 599 QGSE+ L ++TR ++YTA+TRAR + DE ++ ++ R +RR SG Sbjct: 670 QGSEYRAVILAALDGAPMLLTRGVLYTAITRARELFIVVGDEGKVAQMVSNNRQQRRYSG 729 Query: 600 LAALFSSRE 608 L A +S E Sbjct: 730 LRARLASIE 738 >UniRef50_UPI0001C37B34 RecD/TraA family helicase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37B34 Length = 732 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 123/444 (27%), Positives = 198/444 (44%), Gaps = 88/444 (19%) Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 L A+I + + R+ L APTG+AA R+++ G +A T+HRLL Sbjct: 353 LNAIISIFEKRGLRVLLTAPTGRAAKRMSDLTGY-----------------EAKTIHRLL 395 Query: 245 GA---QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 + G H+ NPL DV+V+DE SM+D+ + +L+ AL ++I +GD DQL Sbjct: 396 EVVYDKGGRLTFAHNENNPLDCDVIVIDEMSMVDVLLFEKLLRALRLGCKLIMVGDSDQL 455 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV AG +LGD+ A+ T + +++ R R S C++ +++ Sbjct: 456 PSVGAGNLLGDLI--ASQAVTVIKLQEIFR---------------QARKS-CIVTNAHKI 497 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 S G+L ++R D DF ++ S E +L +DL Sbjct: 498 VS----GEL-PDLSRKD---------SDFFFFKR---NSPEAVCELL----------VDL 530 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH--RHPHSR---- 475 + R ++ Q++ R+G G +N + +Q+K H + P + Sbjct: 531 ARTRLPKAYNYSPVDDIQIIAPSRKGTLGTVEMN----KLLQEKINPHDDKKPEVKGKLF 586 Query: 476 -WYEGRPVMIARNDSAL----------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQP 524 + G VM RN+ + G+FNGDIG ++ TR DG + + Sbjct: 587 TFRLGDKVMQTRNNYDIIWKKDEEQGTGVFNGDIGKIININMMTRNVIIDFDGRLTAYPF 646 Query: 525 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER 584 L + E +A+TVHKSQG EF+ + L + R L+YTAVTRAR+ L + E Sbjct: 647 DTLDQIELAYAVTVHKSQGCEFEAVIMPLLGSFEKLCYRNLLYTAVTRARKLLIIIGSEE 706 Query: 585 ILSAAIAT--RTERRSGLAALFSS 606 +S + RT R + L + S+ Sbjct: 707 DISRMVENNRRTRRYTCLKKMLST 730 >UniRef50_C0QIP1 RecD3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIP1_DESAH Length = 733 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 147/506 (29%), Positives = 230/506 (45%), Gaps = 80/506 (15%) Query: 105 DRLYLNRMWCNERTVARFFNE-----VNHAIEVDEALLAQTLDKL-FPVSDEINWQKVAA 158 D++YL R+ E+ +A +N DEA+ + +L +S E Q Sbjct: 282 DQVYLKRLHMAEKGIAERIRAMLCVPINPVDLSDEAITMEVATRLAVKLSQE---QIDVV 338 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 + R+ VI+GGPGTGKTT + + A L ++ R + LAAPTG+AA RL++ Sbjct: 339 KQVMAHRVVVITGGPGTGKTTLIRAVCAVLKKL----RKTVTLAAPTGRAARRLSQ---- 390 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 +TD++ ASTLHRLL P + + NPL DV++VDEASM+D + Sbjct: 391 ------VTDKK-------ASTLHRLLLCDPDTGEFARNLSNPLDSDVVIVDEASMVDTML 437 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 M L+ A+P ++ +I +GD QL SV G VL DI A A + L+R+ Sbjct: 438 MFNLLLAVPVNSSLILVGDIFQLPSVGPGNVLSDIIAS-----KAVKTFSLTRI------ 486 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ--QDFTDIEKR 396 +R S I A AI G+ ++ +F IE Sbjct: 487 --------------------FRQAEQSPIVMNAHAIRNGEMPCLENSSDGLSEFYFIES- 525 Query: 397 LLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE 456 S E +A + E + + +A P + +E Q+L + +G G LN+ Sbjct: 526 --ASPERVVATIVELCSNRIK-------KAFPHV-----DEIQVLTPMHKGEAGTINLNQ 571 Query: 457 RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPD 516 +++Q + + + G VM +N+ +FNGDIGI + + D Sbjct: 572 KLQQVLNKAAGGIEARGLTFKTGDKVMHLKNNYQKEVFNGDIGIVHEVVKSEGRLSVDYD 631 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 G + L E +A++VHKSQGSE+ + + Q P++ R L+YTA+TR + Sbjct: 632 GRVVDYDLLELDELTLAYAVSVHKSQGSEYSAVVIAMTVQHYPLLQRNLLYTAMTRGKNL 691 Query: 577 LSLYADERILSAAI-ATRTE-RRSGL 600 + + R + A+ RT+ R SGL Sbjct: 692 VIVVGSRRSMEIALHNNRTDCRLSGL 717 >UniRef50_C8PAU3 Exodeoxyribonuclease V alpha subunit n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAU3_9LACO Length = 780 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 137/561 (24%), Positives = 249/561 (44%), Gaps = 92/561 (16%) Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 ++ L+ + EL ++ L + V+ + +++ D++ L M+ E+ +A Sbjct: 236 TYLLMDKWLENTSELLYIDDFDLLANEVNNLKKDNKVVIFDDKVSLTNMYTIEKDIANDL 295 Query: 124 NEVNHAIEVDEALLAQTLD-------KLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 ++ + + D L L+ + F +S + + QK A AL IS+++GGPGTG Sbjct: 296 KRISDSNKKDIPYLDDDLNSAIKHVEQKFDISYD-DTQKKAIKTALNNSISILTGGPGTG 354 Query: 177 KTTTVAKLLAALIQMAD-------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 KTT + +LA L ++ + LAAPTG+AA R++E G Sbjct: 355 KTTIIRGILATLQEIEKIPNDVLYTDDPPFLLAAPTGRAAKRMSELTGI----------- 403 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 DA T+HRLLG G L N L+ ++L++DE SM+D+ + L+ ++ Sbjct: 404 ------DAKTIHRLLGL--GISDLNQENMNELNGEILIIDEMSMVDMFLFKNLVSSIFQL 455 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 ++F+GD+DQL SV G + D+ A + A ++L+ H Sbjct: 456 KHIVFVGDKDQLPSVGPGNIFSDLIASS--------AFPTTKLSMIH------------- 494 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 R DS I LA IN+ + A +F + +I+ Sbjct: 495 ----------RQSDDSSIVDLAHKINQNNAQA--NIFTK----------TPNYSFISCKP 532 Query: 410 EALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ----Q 464 ++A + +D+ + ++ Q+L A+ G G+ LN+ ++ M Sbjct: 533 NSIADAIEKIVDIALEKG------FCADDIQVLTAMYNGVSGINSLNDLLQNIMNPAKID 586 Query: 465 KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALDRGQGTRVWFAMPDGNIKSV 522 +K+ H + + G V+ +N+ ++NG IG + +D Q + D + Sbjct: 587 SKKVEVH-NEFFRIGDRVLQLQNNPEKEIYNGQIGKVVGIDDSQKSAKLIVRFDDREVML 645 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 + L + +A+T+HKSQGSEF L L Q ++ + L+YT +TRA++ L + + Sbjct: 646 TSNDLSDLTRAYAITIHKSQGSEFPLVILALTMQNYIMLKKNLLYTGITRAQQNLVMIGE 705 Query: 583 ERILSAAIATR-TERRSGLAA 602 E+ A+ T +R++ L + Sbjct: 706 EQAYQMALKTEGNDRQTDLCS 726 >UniRef50_A6TL79 Helicase, RecD/TraA family n=35 Tax=Bacteria RepID=A6TL79_ALKMQ Length = 754 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 134/483 (27%), Positives = 213/483 (44%), Gaps = 111/483 (22%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A A+ ISVI+ G T + +LI++ + ++ LAAPTG+A+ R+T Sbjct: 331 QKEAIKEAIENGISVIT----GGPGTGKTTTINSLIKVFEKLELKMLLAAPTGRASKRMT 386 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR----LRHHAGNPLHLDVLVVD 269 E+ GK ++ T+HRLL G R + + NPL V+++D Sbjct: 387 EATGK-----------------ESKTIHRLLELGFGDDREGMLFQRNEDNPLDCHVIIID 429 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+D+ +M+ L+ ++ RV+ +GD DQL SV AG VL DI Sbjct: 430 EVSMVDIILMNSLMKSIARGTRVVLVGDVDQLPSVGAGNVLRDIID-------------- 475 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 S++ T L + +R +S I A IN+G + Q+D Sbjct: 476 SKVVKT-----------------IRLTEIFRQAQESMIVVNAHRINQGLYPQLNEK-QKD 517 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 F +++ + ED +A + ++L++ R A + Q+L +++G Sbjct: 518 FYFMKR---NAKEDVLATV----------VELVRDRLPKHYQFDALRDIQVLTPMKKGET 564 Query: 450 GVAGLNERIEQFMQQ----------KRKIHRHPHSRWYEGRPVMIARNDSAL-------- 491 G LN+ ++ + K KI R EG VM +N+ L Sbjct: 565 GTLNLNKELQAALNPPNVSKAEKDLKEKIFR-------EGDKVMQIKNNYTLKWRCLDPM 617 Query: 492 -------GLFNGDIGI--ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 G+FNGDIG ++D + + D + ++L E E +++T+HKSQ Sbjct: 618 AEEQKGEGVFNGDIGYVQSIDT-EAEELVILFDDQKQVNYSFTQLDELELAYSVTIHKSQ 676 Query: 543 GSEFDHAALILPSQRTP--VVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRS 598 GSEF +++P P ++TR L+YTAVTRAR + L E L + ER S Sbjct: 677 GSEF--PVVVIPITWGPPMLLTRNLLYTAVTRARSLVVLVGVESYLKKMVDNNKIIERYS 734 Query: 599 GLA 601 GL Sbjct: 735 GLG 737 >UniRef50_A4S3Z4 Predicted protein (Fragment) n=37 Tax=Eukaryota RepID=A4S3Z4_OSTLU Length = 772 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 152/529 (28%), Positives = 236/529 (44%), Gaps = 99/529 (18%) Query: 107 LYLNRMWCNERTVAR-FFNEVNH-AIEVDEALLAQTLDKLFPVSDEINW------QKVAA 158 LY + M E VA N + I+VD A + + L+ + + W QK Sbjct: 296 LYTSAMHSAEVAVASDVINRIRRPKIKVDSARVERWLEA---AAQKEGWRTLSETQKDFV 352 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 +AL +S+++GGPGTGKT ++ M + + APTG+AA RL E + Sbjct: 353 RLALESPVSILTGGPGTGKTFATHVIVRLWRAMGKS----VVMCAPTGRAAQRLME-ITT 407 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ-----------------RLRHHAGNPL 261 A R + P +ST+HRLL + R A NP+ Sbjct: 408 AGRDIA--------NPVTSSTIHRLLEFKAADALEGMEDDGPMQALSYKGRFSRDAKNPI 459 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 DV+VVDE+SM+DLP+ + L+ A+P A+V+F+GD DQL SV G++L D+ A N Sbjct: 460 QADVVVVDESSMLDLPLAAALLAAVPPSAQVVFVGDADQLPSVGPGSLLRDLLAARN--- 516 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 VP+ L +R + SGI + A AIN G Sbjct: 517 ---------------VPS-------------IALTDIFRQAAASGIVRAAHAINSGA--- 545 Query: 382 VKTVFQQDFTDIEKRLLQSGED--YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN--E 437 F ++ R + D ++++ E A LD + + P + F+ + Sbjct: 546 --------FLPLDIREQRHDPDCLWVSLPSETNASVEAVLDHILSDILP---ARGFSPKD 594 Query: 438 YQLLCALREGPFGVAGLNERIEQFM----QQKRKIHRHPHS---RWYEGRPVMIARNDSA 490 Q+L +R G LN ++ + + K+++ S + EG V+ RND Sbjct: 595 LQVLSPMRRGVASTGSLNNWLQTSLNPSCESKKEVAVGGFSGDVTFREGDRVLQQRNDYD 654 Query: 491 LGLFNGDIGIA--LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 +FNGD+G+ +D GT + D S L + +AMT+HK+QGSE+ Sbjct: 655 KEVFNGDLGVIQRIDTKAGTAIVSFGADFKEVSYTKGELRDLIPAYAMTIHKAQGSEYRA 714 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 L++ + P++ REL+YT VTRA+ L + A L+AAI T + R Sbjct: 715 VVLVMTNAHKPLLRRELLYTGVTRAKELLVIVAPRTALAAAIDTAGKDR 763 >UniRef50_Q8R8A3 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A3_THETN Length = 723 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 155/568 (27%), Positives = 245/568 (43%), Gaps = 122/568 (21%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 EGH+ LP++ L AS +L ++G + ++ L + A D+ ++ Sbjct: 224 EGHLYLPITTL-CKAASEKIL-----KVGYTKVLDQALYLTAAQELYDDEG-------KV 270 Query: 108 YLNRMWCNER----TVARFFNE----VNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAA 158 YL + + NE+ +A+ NE +N+ E + EA A+ + + P QK A Sbjct: 271 YLPKNFYNEKYIAEKIAKMLNEKPWRINNIDELIKEAEAAKNI-RYSP------KQKEAI 323 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 A+ IS+I+ G T +++AL+ + + + LA+PTGKAA RL E Sbjct: 324 KKAVENNISIIT----GGPGTGKTTIVSALLYIFQKQDKLVALASPTGKAAKRLEE---- 375 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPG----SQRLRHHAGNPLHLDVLVVDEASMI 274 + P A T+HRLL A+ S R + NPL DV+++DE SM+ Sbjct: 376 -VTIYP------------AKTIHRLLEARFDKEFRSVRFFRNENNPLDEDVVIIDEFSMV 422 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG 334 D + + L AL +++ +GD DQL SV AG VL D+ Sbjct: 423 DNELAASLFKALRKDTKLVIIGDMDQLPSVGAGNVLRDLIE------------------- 463 Query: 335 THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE 394 +G + D + +R G SGI + I G +DF I Sbjct: 464 ------SGIIPVTKLDVI------FRQGETSGIILNSKLIREGKMVRFNN---KDF--IF 506 Query: 395 KRLL---QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 L+ Q +++I LE+ G+ LD + Q+L +++ G Sbjct: 507 HELVKPEQVVDEFIKELEK-----GKTLD----------------DVQILTPMKKTDIGT 545 Query: 452 AGLN----ERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI---ALDR 504 LN ERI QK +I + + G VM +N+ +FNGD G A Sbjct: 546 LELNRLIQERINPPHPQKEEIA-YGSKIFRVGDKVMQTQNNYEKEIFNGDTGYVKRAYRD 604 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 +G R DG I + L E +A+T+HKSQGSE+D ++L ++ R Sbjct: 605 EEGLRHVVIDFDGRIVDLVEEELKEIIPAYAITIHKSQGSEYDTVIVVLAMNHYIMLKRN 664 Query: 565 LVYTAVTRARRRLSLYADERILSAAIAT 592 L+YTAVTRA+ + ++ D + + AI T Sbjct: 665 LLYTAVTRAKNVVKIFGDMQAIKIAINT 692 >UniRef50_A2BRT1 Possible exodeoxyribonuclease V 67 kD polypeptide n=7 Tax=Prochlorococcus marinus RepID=A2BRT1_PROMS Length = 567 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 140/545 (25%), Positives = 234/545 (42%), Gaps = 122/545 (22%) Query: 94 GDEPTPMILCGDRLYLNRMWCN--ERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI 151 G +P +L +L L++ W ER + F +++ + + +++ + +K+ DEI Sbjct: 84 GSLHSPFVLVNRKLSLSK-WSKKIERVINSFLKKID-TVNLMNSIIFKDDNKI----DEI 137 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 + I + GGPGTGKTT + KL+ + I L+APTGKA AR Sbjct: 138 ------KNIFKYSNIVFLQGGPGTGKTTLIIKLILE--LLQIDNFLNIGLSAPTGKATAR 189 Query: 212 LTE--------SLGKALRQLPLTDEQKKRIPEDASTLHR-LLGAQPGSQRLRHHAGNPLH 262 L E S K L Q+ TLHR +L +Q S +L+ Sbjct: 190 LKEALNDKKNISFNKFLDQIEF------------QTLHRWILNSQNKSLKLKFKLK---E 234 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 LD+ ++DE SM+++ ++ ++D L ++I +GD++QL+ V ++ + Y+ Sbjct: 235 LDIFIIDEMSMVNIDLIESVLDLLAKDCKIILVGDKNQLSPVNNCSIWNYLFEYS----- 289 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR------------FGSD-SGIGQ 369 + +S++ + L+K+YR F +D S + Q Sbjct: 290 ---------------------DNSSIKSCVVNLEKTYRNIGDIALISSLIFNNDFSLLNQ 328 Query: 370 LAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA--- 426 + + + + T+ + DI K LL S ++ L + + + + Sbjct: 329 KIKELEKDNNSKEITISKSSEKDIPKDLLFSITSHLKQLNISTSNLSKKKYIFDESIDNL 388 Query: 427 ---EPDLIIQAFNEYQ---LLCALREGPFGVAGLNERIEQFMQQKRKIHRHPH--SRWYE 478 E DL+ + F + Q +LC G + V LNE + F Q+K P+ E Sbjct: 389 LLNEKDLVDKIFLDLQSHLILCEKNSGIWSVEYLNEIV--FGQKK------PYDLKTLKE 440 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF-AMPDGN---IKSVQPSRLPEHETTW 534 G P+M +N++ LGL NGDIG+ + + F D N + + PS L Sbjct: 441 GIPIMCTKNNNELGLSNGDIGVLIGLKNKRKYLFRKFNDNNEEIVSLIDPSNLENVVPAI 500 Query: 535 AMTVHKSQGSEFDHAALILPSQ---RTPVVTRE----------------LVYTAVTRARR 575 A T+HKSQGSE + IL SQ R +E L YTAVTRA++ Sbjct: 501 AFTIHKSQGSESEKVN-ILWSQNYRRNKYAVKEKKDDQNIFCRDNFERRLFYTAVTRAKK 559 Query: 576 RLSLY 580 L+++ Sbjct: 560 TLNIF 564 >UniRef50_Q3AB49 Helicase, RecD/TraA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB49_CARHZ Length = 745 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 151/560 (26%), Positives = 248/560 (44%), Gaps = 121/560 (21%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 +GHV LPL+ + N LA IG + +E L S + G+ + L DRL Sbjct: 234 QGHVYLPLAEVYNKG-----LALLGEGIGP-ETLDEGL--SVLLRTGE----VCLERDRL 281 Query: 108 YLNRMWCNERTVAR----FFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALT 163 YL +++ E+TVAR + I + + L ++K +S + QK A ++ Sbjct: 282 YLKKLYDAEKTVARKVAFLLTITDKKINIKKPL--NEVEKKLGISYD-PLQKEALSLMFA 338 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 + I G TTV K L Q + +I LAAPTG+AA RL+ES G + Sbjct: 339 EKKLFILTGGPGTGKTTVIKGFIELYQRF-FPKNKIALAAPTGRAAKRLSESTG-----M 392 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQ----PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 P A+T+HRLL + G R++ PL D++++DE SM+DLP+ Sbjct: 393 P------------AATIHRLLEPEGETRSGELLFRYNKYEPLPYDLIIIDEVSMLDLPLA 440 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 + L +A+ R++ +GD +QL V G +L D+ A ++ R++ Sbjct: 441 AALFEAITPECRLVLVGDPNQLPPVGPGQLLKDLLA----------VEEIPRIS------ 484 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD---------KTAVKTVF---Q 387 L+ +R G D+GI ++A + GD + ++ VF Sbjct: 485 ---------------LKTVFRQGEDAGIIEVAHRVLTGDWSELERLLGRRILEDVFFLPA 529 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 +D +I LL+ ++++ YG P+ I +L +R+G Sbjct: 530 KDTENITNLLLK-------VVKKLWENYG---------YSPEDI-------AVLSPMRKG 566 Query: 448 PFGVAGLNERIEQ----FMQQKRKIHRHPHSRWYEGRPVMIARNDSAL---GLFNGDIGI 500 GV LN +++ F Q+ K + + VM +N+ G+FNG+ G Sbjct: 567 ALGVENLNVLLQKLFNGFETQEVKFF---GTSFKVNDKVMQIKNNYERGEDGVFNGETGF 623 Query: 501 ---ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 + G + + NIK + + L E ++A TVHK+QG E+ L+L + Sbjct: 624 IKKIIKSGDEEEIIVSFDGKNIK-YRKTDLEELTLSYATTVHKAQGMEYPVVILVLHNYH 682 Query: 558 TPVVTRELVYTAVTRARRRL 577 P++ R L+YTAVTRA++ L Sbjct: 683 YPLLKRNLLYTAVTRAKKML 702 >UniRef50_A8SM75 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SM75_9FIRM Length = 739 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 140/534 (26%), Positives = 226/534 (42%), Gaps = 115/534 (21%) Query: 107 LYLNRMWCNERTVARFFNEVNHAIE---VDEALLAQTLDK---------LFPVSDEINWQ 154 +Y+N + +E + F E N ++ V E+ +A L K LF + EI Sbjct: 252 VYMNLLLSSEVVIDNSFEESNIYLDYLYVSESYIASKLAKMALNDDFKILFDIEKEIKEA 311 Query: 155 KVAAAVALTR------------RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 + ++ L++ IS+I+GGPGTGKTT + + + I + +G I L Sbjct: 312 IKSLSIKLSKIQIDAIKSCFEENISIITGGPGTGKTTIINTI--SKIYLDNG--YNISLC 367 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ----RLRHHAG 258 APTG+AA R+ E+ G +A T+HR+LG P S ++ Sbjct: 368 APTGRAAKRIEETTGI-----------------EAKTIHRMLGYIPSSYDDIGHFEYNED 410 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL DV+++DE SM+D+ + +L+ + D+ R++ +GD DQL SV AG VL D+ Sbjct: 411 NPLDTDVIIIDEMSMVDVVLFEKLLRGMKDNTRLVIVGDVDQLPSVGAGNVLRDLINSKK 470 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 +T L +R S I A IN G Sbjct: 471 IKYTK-------------------------------LVDIFRQSESSNIIVNAHKINNGQ 499 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQAFN- 436 E L + D+ + E A +DL+ R P+ F+ Sbjct: 500 ---------------EPILNEKNSDFFFLKTETPAITRNVVVDLISKRL-PNAYGYDFSK 543 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH---PHSRWYEGRPVMIARNDSAL-- 491 + Q+L R+G GV LN ++ + K + + + VM +N+ L Sbjct: 544 DIQILTQSRKGICGVFELNRLLQDILNPKTETTDELLVGNKLFRVNDKVMQTKNNYNLSF 603 Query: 492 ---------GLFNGDIG--IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 G++NGD+G I +D+ ++ M D + L E +A+T+HK Sbjct: 604 FDSDGEENFGVYNGDMGHIIFIDKS-SKKLTVEMDDKRVIDYTLEDLDNLELAYAITIHK 662 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 SQGSEF + + + TR L+YTA+TRA+ + L D+ +++ I T Sbjct: 663 SQGSEFKSVIIPMFDGYRLLQTRNLLYTAITRAKENIILVGDKNVMNNMIRNNT 716 >UniRef50_C9LLQ3 Helicase, RecD/TraA family n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLQ3_9FIRM Length = 709 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 127/442 (28%), Positives = 192/442 (43%), Gaps = 100/442 (22%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 L+ A+I A+ L APTG+AA RL S G+ DA T+H+ Sbjct: 349 LIRAIITAAEQNGLEPALMAPTGRAAKRLAISSGR-----------------DADTIHKA 391 Query: 244 LGA---QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 L A + G + NPL D+++VDEASM+D+ + L+ AL D AR+I +GD DQ Sbjct: 392 LEASVRETGRTYFERNEANPLEEDLIIVDEASMLDISLFYHLLCALKDGARLILVGDIDQ 451 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L V AG L D+ ++ +VP + L++ +R Sbjct: 452 LPPVGAGEPLKDLMSWG------------------YVP-------------IVRLKRIFR 480 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 SGI + AA I +G+ ++GE I + Y +D Sbjct: 481 QEEGSGIVENAALIRKGEMCVPD---------------EAGEFRIVYAADDEDAYRIVMD 525 Query: 421 LLQ----ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS-R 475 L + E +++ Q+L + G GV LNE +++ + ++ P + Sbjct: 526 LCRELNYGNEENKMLL------QVLSPMYRGVCGVDHLNESLQEMIHGEKV----PDGMK 575 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDG-NIKSVQPSRLPEHET-- 532 ++ G VM RND G++NGD+G VW A P ++ + E E Sbjct: 576 FFPGDKVMQTRNDYEKGIYNGDVGT---------VWTATPQKVFVRYFDKEVVYEGEERF 626 Query: 533 ----TWAMTVHKSQGSEFDHAALIL-PSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 +A+TVHKSQGSE++ IL PSQ ++ R L+YT VTRAR+ L L Sbjct: 627 DLRLAYAVTVHKSQGSEYETVIFILRPSQHN-MLQRNLLYTGVTRARKNTILVTAPDALR 685 Query: 588 AAIATR-TERRSGLAALFSSRE 608 A+A + T R L F + E Sbjct: 686 RALAIQHTGNRYSLFLPFLNHE 707 >UniRef50_B4VXL3 Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VXL3_9CYAN Length = 777 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 85/488 (17%) Query: 105 DRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW---------QK 155 + LYL ++ E VA+ ++ L + L KL + + W Q+ Sbjct: 218 ESLYLKPIYRAEVNVAQLILYFASRSQLPIEPLKEWLQKL----EAVEWRESDLLAPEQR 273 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 A + + IS+I+GG G GKT +L LI R ++ LAAPTGKAA R+ + Sbjct: 274 QALLKSYAQPISIITGGAGRGKT----HILKYLINWLTECRFKVALAAPTGKAATRMKNA 329 Query: 216 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 G DA T+HRLL + Q+ + NPL +D L++DE SM+D Sbjct: 330 TGL-----------------DAQTIHRLLQWRGYGQKFEFNQDNPLPIDWLIIDEFSMVD 372 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 + + + L+ AL H R++ +GD +QL SV AG VL D+ L Sbjct: 373 IFLFNSLLKALEPHTRIVLVGDHNQLPSVGAGMVLRDL------------------LISE 414 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK 395 VP L+K YR +S I A + RG V Q+ + ++ Sbjct: 415 VVPCSR-------------LKKIYRQPEESPIIYAAEDVIRG----VVPNLQRFNSPLQW 457 Query: 396 RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 + + EA+A L R + +L Q +L ++G GV LN Sbjct: 458 QEVSDCALLCRHTPEAIADTIVELVAQMQRDQVNLKDQVM----VLAPQKKGVVGVQALN 513 Query: 456 ERIEQFMQQKRKIHRHPHSRWYE-----GRPVMIARN--DSALGLFNGDIGIALD---RG 505 +R++ K+ P E G V+ +N D+ + NG+ G ++ + Sbjct: 514 KRLQPLFNPKQP--EQPEVETGEVVYRVGDRVIQLKNRYDTIPAVMNGEGGWVIEVHPKS 571 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 Q RV A G + P + ++ +T HK+QGSEF + + L +++R+L Sbjct: 572 QPERVKVAFEGGAVVDYVPGIFEQIMHSFCLTCHKAQGSEFQYVIMPLSPSNHRMLSRQL 631 Query: 566 VYTAVTRA 573 +YT +TRA Sbjct: 632 LYTTMTRA 639 >UniRef50_Q310C7 ATP-dependent DNA helicase, RecD/TraA family n=4 Tax=Deltaproteobacteria RepID=Q310C7_DESDG Length = 698 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 211/463 (45%), Gaps = 87/463 (18%) Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A AL IS+ISGG G+GK+ T++ ++ + + +D E + LAAPTGKAA RL E Sbjct: 290 AVRSALQHSISLISGGAGSGKSYTIS-VINTICEESDLE---VVLAAPTGKAAKRLEEVS 345 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQ-PGSQRLRHHAGNPLHLDVLVVDEASMID 275 G++ +T+HRLLG G R + NP+ DVLVVDE SM+D Sbjct: 346 GRS-----------------GTTIHRLLGYDGKGFSRSKE---NPIDADVLVVDEFSMVD 385 Query: 276 LPMMSRLIDALPDHAR--VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +P+ L +A+ D +R V+ +GD +QL V G +L D+ +R Sbjct: 386 VPLAWHLFEAV-DLSRTTVLLVGDHNQLPPVGPGNILRDLIQ--------------TRAI 430 Query: 334 GTHVPAGTGTEAASLRDSL-CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD-FT 391 T + +A L+++ +L+ R S++ + + + + D FT Sbjct: 431 PTVILDKVVRQAGVLKENCTAVLKGEVRKTSEASV------------SGCRDWYLVDQFT 478 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 D +A L+L Q R + L + Q+L +GP G Sbjct: 479 D------------------PMAARSFLLELFQERLDT-LGFDIIKDVQVLTPTHKGPLGT 519 Query: 452 AGLNERIEQFMQQKRKIHRHP------HSRWYEGRPVMIARNDSALGLFNGDIGIALD-R 504 LNE +++ +Q+K P + + + V+ RN+ L + NG IG +D Sbjct: 520 KELNEELQRLIQRKLWNTEVPPVAMGRRAPFLKHDKVIQTRNNYDLNVMNGAIGYVVDVL 579 Query: 505 GQGTRV--WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 GT V + MP ++ P L + + +A+T+HK+QGSEF A +++ + + Sbjct: 580 ANGTLVIDFDGMP-VELEKGSPD-LQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHH 637 Query: 563 RELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGLAALF 604 R L+YT VTRARR + D I + A + + R LF Sbjct: 638 RNLLYTGVTRARRTAIVLGDHWGIQNCAKRCQVDDRRTFLPLF 680 >UniRef50_Q2LTP5 Exodeoxyribonuclease V alpha chain n=22 Tax=Bacteria RepID=Q2LTP5_SYNAS Length = 753 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 118/433 (27%), Positives = 189/433 (43%), Gaps = 79/433 (18%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 ++ A+I++ +I LAAPTG+AA R++E+ G +A T+HRL Sbjct: 383 IINAIIRIFSASGTKILLAAPTGRAAKRMSEATGM-----------------EAKTIHRL 425 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 L P + +PL ++L+VDEASMID+ +M L+ A+P + I +GD DQL S Sbjct: 426 LEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDGDQLPS 485 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL----LQKSY 359 V AG VL D+ +S CL L++ + Sbjct: 486 VGAGRVLNDVI-----------------------------------ESGCLPVVELREIF 510 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQ--DFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 R +S I A INRG ++ + DF +E+ + D I Sbjct: 511 RQARESSIINNAHEINRGKFPRLQPPGDRLDDFYFVEQEDPEKVVDLI------------ 558 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 + L++ R + + Q+L + G G LN ++ + + + + Sbjct: 559 -IRLVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQATLNPGKDGLQRGGRFYL 617 Query: 478 EGRPVMIARNDSALGLFNGDIG--IALDRG-QGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 G VM RN+ ++NGDIG + LD Q + F DG + L E ++ Sbjct: 618 VGDKVMQIRNNYDRDVYNGDIGRIVRLDHELQEATLNF---DGREVVYEYGDLEEIVLSY 674 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 A++VHKSQG+E+ + L Q ++ R L+YTAVTR ++ + + ++ L AIA R Sbjct: 675 AVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVIIGSKKAL--AIAVRN 732 Query: 595 ERRSGLAALFSSR 607 + L S R Sbjct: 733 NKTHKRFTLLSQR 745 >UniRef50_D1VRZ7 Helicase, RecD/TraA family n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRZ7_9FIRM Length = 727 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 115/429 (26%), Positives = 185/429 (43%), Gaps = 84/429 (19%) Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 L ALI + + +I+LAAPTG+AA R+ ES G DA T+H+LL Sbjct: 348 LKALIDVYEFMGKKIKLAAPTGRAAKRMKESTG-----------------HDALTIHKLL 390 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 + ++ L DVL+VDE SM+D+ +M L+ +L R+I +GD DQL SV Sbjct: 391 EINFTDSKDIYYDPIDLECDVLIVDEMSMVDIMLMETLLRSLEKGVRLILVGDPDQLPSV 450 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 AG VL DI ++ S++ + +R + Sbjct: 451 GAGNVLRDIID----------SKLFSQVNLVEI---------------------FRQKEE 479 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 S I + A IN+G++ + DF I ++ G + I DLL Sbjct: 480 SMIIKNAHLINKGERPILNN---NDFFLISEQGENKGLEIIK-------------DLLSK 523 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYEGRPVM 483 R I + ++ Q+L +++G G LN+ +++ + + + KI + R + Sbjct: 524 RLGEYYGIDS-SDIQVLSPMKKGLLGTFNLNKVLQELLNKSQEKIEVFGKTFKLYDRVIQ 582 Query: 484 IARN-------------DSALGLFNGDIGIALDRGQGTRVW-FAMPDGNIKSVQPSRLPE 529 + N ++ G+FNGD+G ++ D P L + Sbjct: 583 MKNNYDLEAIIENDFYKETTKGVFNGDLGYISSIDVEEKILEVTFDDAKKVKYLPEDLDQ 642 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTP--VVTRELVYTAVTRARRRLSLYADERILS 587 E ++AMT+HKSQGSEF +++P P ++TR L+YTA+TRA + + L L Sbjct: 643 LELSYAMTIHKSQGSEF--PVVVIPLFWAPPMLLTRNLIYTAITRASKLVVLVGKYEYLM 700 Query: 588 AAIATRTER 596 I R Sbjct: 701 KMIENNKTR 709 >UniRef50_Q6F1E4 Exodeoxyribonuclease V n=1 Tax=Mesoplasma florum RepID=Q6F1E4_MESFL Length = 743 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 126/536 (23%), Positives = 242/536 (45%), Gaps = 91/536 (16%) Query: 86 LASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN-------------HAIEV 132 L + + E + L +R+Y W E+ +A ++N ++ Sbjct: 261 LLFEGILYAKEKGILKLTKNRIYTEESWREEQIIADNIIKLNIPTKNANKEGISWEINQI 320 Query: 133 DEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 +E + + K F ++ Q+ A + ++S+I+GGPGTGKTT + ++ +M+ Sbjct: 321 EEEIAYENKIKDFKFDEK---QREALELFANNKLSIITGGPGTGKTTLIKGIVKLFNRMS 377 Query: 193 DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 E I A PTG+AAAR+ E+ K+ A+T+H+LL A+ + Sbjct: 378 GTEDYAI--ATPTGRAAARIRETYKKSY----------------ATTIHKLLEAKE-LNK 418 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 + NPL+ ++++DE SMID + + I + +V+ +GD +QL SV G D Sbjct: 419 FQITQNNPLNQKLVILDECSMIDNKLFASFIQSCDRVRKVVLVGDANQLPSVGYGNTFAD 478 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 + +L L L +R + +GI LA Sbjct: 479 LL-------------ELDFLKTIK------------------LDTVHRQKNGNGIVDLAY 507 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 + + + + + +++E + ++ + + E + G++ D L+ RA Sbjct: 508 KV-LNETLEISDL--ESMSNVEINFDYNNQNTMNKVTEIV---GQHWDDLEKRA------ 555 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIE----QFMQQKRKIHRHPHSRWYEGRPVMIARND 488 N Q++C + G G+ +N +I+ + ++ K+K++ R+ +M +ND Sbjct: 556 ---NHLQVICPMYGGELGIDEINAQIQNEFNENVKDKKKVYDRGDYRFVVEDKIMFLKND 612 Query: 489 SALGLFNGDIG--IALDRGQGTRVWFAMPDGNIKSV--QPSRLPEHETTWAMTVHKSQGS 544 + L L NGD+G I ++ R+ + + N K + QP + + ++A +VHK+QGS Sbjct: 613 TDLDLANGDVGKIIKINYDAIGRLKDVLTEFNDKEILLQPKNFSDVKLSYATSVHKTQGS 672 Query: 545 EFDHAALIL--PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 E+++ L++ P + + + L+YTAVTRA+ ++ + D + AI RR+ Sbjct: 673 EYNNVLLVIDSPKFNSGFINKTLIYTAVTRAKDKIVILGDSDLFFNAIKITPPRRN 728 >UniRef50_A9NFP8 ATP-dependent exoDNAse (Exonuclease V), alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFP8_ACHLI Length = 749 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 139/542 (25%), Positives = 240/542 (44%), Gaps = 102/542 (18%) Query: 65 HPLLATCVSEIGELQNWEECLLA------------SQAVSRGDEPTPMILCGDRLYLNRM 112 + L+ T SE G L +EE L++ A+ + ++L D+ +L ++ Sbjct: 216 YALITTSNSE-GNLYLFEEELMSRVSRVIDVDADFKPAIDELIKENKLVLEDDKYFLKQI 274 Query: 113 WCNERTVARFFNEVN-HAIE-VDEALLAQTLDKLFPVSDEINW---QKVAAAVALTRRIS 167 + +E +A+ E+ + ++ VD LL L ++ + I++ Q+ A A+ ++ Sbjct: 275 YRDEIDIAKRIKELKTYPLDHVDTELLELMLSQI-SIQKSIDYTEKQRQAIITAMQNPLT 333 Query: 168 VISGGPGT-------GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 VI+GGPGT G AK ++ D I L APTG+A+ R+ E L Sbjct: 334 VITGGPGTGKTTLIDGFLELYAKYFKINLKSKDATN-EIALMAPTGRASKRMRE-----L 387 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 P A T+H LG Q + + PL +++++DEASMID+ +M Sbjct: 388 LDFP------------ARTIHSHLGFD-FDQSFKSNKVQPLVQNLIIIDEASMIDIYLMK 434 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 RL++++ D RV+ +GD DQL SV G VLGD+ ++ VP Sbjct: 435 RLLNSIIDGTRVVIVGDEDQLPSVGPGYVLGDL------------------ISSNVVP-- 474 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS 400 + L + +R DS I +LA++IN + + + D T + Sbjct: 475 -----------VIRLNEIHRQAKDSHIVKLASSINNQNLSQEDLISHNDVTFYSG----T 519 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE- 459 GED ++ + G + DLI N+ Q+L +G G+ +N I+ Sbjct: 520 GEDIKRVIINQIGG--------AMKKGYDLI----NDIQVLIPQYKGDLGIDTMNLEIQA 567 Query: 460 QFMQQKRK--IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGTRVWF 512 +F + + +Y G V+ +ND + NGDIG+ D+ Q ++ Sbjct: 568 KFNPNYNQPPFMKFGDKTYYIGDKVIQLQNDKDKEIMNGDIGVVKAIRKNDKNQ--KILQ 625 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 DG + + + L + +++HKSQGSE+ L + ++ +EL+YTA+TR Sbjct: 626 VDFDGLLVNYDQNELDTLNLAYVISIHKSQGSEYQVVFLPIIKSYLHMLKKELIYTAITR 685 Query: 573 AR 574 A+ Sbjct: 686 AK 687 >UniRef50_B2A8J3 Helicase, RecD/TraA family n=2 Tax=Clostridia RepID=B2A8J3_NATTJ Length = 726 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 121/430 (28%), Positives = 190/430 (44%), Gaps = 81/430 (18%) Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 V K L + Q A G++ + LAAPTG+AA R++E+ G ++A T+ Sbjct: 354 VIKCLMDIFQKA-GQK--VMLAAPTGRAAKRMSEATG-----------------DEAKTI 393 Query: 241 HRLLGAQPGSQ---RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 HRLL + + + + PL D+L+VDEASMID +M+ L+ A+ R++ +GD Sbjct: 394 HRLLEFTYDKEEGMKFQRNQDRPLKGDLLIVDEASMIDTILMNNLLKAISPGTRLVLVGD 453 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 DQL SV AG VL DI S R L L++ Sbjct: 454 TDQLPSVGAGNVLQDII-------------------------------ESGRIPLVRLKR 482 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY----IAMLEEALA 413 +R +S + A IN G K + +DF + + + ED I++ + L Sbjct: 483 VFRQARESMVVVNAHRINEG-KFPILNAKGKDFYFLPR---EEPEDVVKTIISLCAKRLP 538 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ--QKRKIHRH 471 Y Y N+ Q+L +R GV LN+ +++ + QK K + Sbjct: 539 NYNGY--------------HPVNDIQVLSPMRRTVTGVENLNQSLQKVLNPPQKNKAEIN 584 Query: 472 PHSRWYE-GRPVMIARNDSALGLFNGDIGIALD-RGQGTRVWFAMPDGNIKSVQPSRLPE 529 Y G VM +ND +FNGD GI + V G + + L Sbjct: 585 FGGACYRTGDKVMQVKNDYEKNVFNGDTGIVTKVDAEENVVNVRYGHGEEIAYEGRELDA 644 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 + ++VHKSQGSE+ L + +Q ++ R L+YTAVTRA+ + L ++ + A Sbjct: 645 LVHAYCISVHKSQGSEYPVVVLPVTTQHYIMLQRNLLYTAVTRAKSLVVLVGTKKSIGIA 704 Query: 590 IAT-RTERRS 598 I+ +T+ R+ Sbjct: 705 ISNKKTDERN 714 >UniRef50_B0MLK7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLK7_9FIRM Length = 753 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 142/577 (24%), Positives = 243/577 (42%), Gaps = 112/577 (19%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 +L +A GH CLP +L + C + E + +E CL + + Sbjct: 226 VLHENANAGHTCLPTEKLRE--------SVCDNLGIERRQFESCLDDCEE----KDWVVR 273 Query: 101 ILCGDR--LYLNRMWCNERTVAR---FFNEVNHAIEVDEALLAQTLDKLFPVSDEINW-- 153 I G R +YL + E +A+ F + E D + + ++ S+ I + Sbjct: 274 ITLGKREFVYLPEYYLAETYIAKKLAFMLRTSAQYEKDYSDEIRGVE----FSENIQYED 329 Query: 154 -QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q+ A + LT + +++ G T L +I++ ++ RI L APTG+AA R+ Sbjct: 330 LQRAAISACLTGSVFILT----GGPGTGKTTTLNGVIKILKAQKKRILLCAPTGRAAKRM 385 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ---PGSQRLRHHAGNPLHLDVLVVD 269 ++ G E A T+HRLL G + + + NPL DV++ D Sbjct: 386 SDLTG-----------------EPARTIHRLLEVDFTAKGELKFKRNETNPLPADVVIAD 428 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+D +M L+ A+ ++ I +GD +QL SV AG VL D+ A Sbjct: 429 EMSMVDALLMCSLVRAIKPTSKFIMVGDSNQLPSVGAGNVLKDLIA-------------- 474 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 ++P+ L++ +R + S I A I G+ + Q D Sbjct: 475 ----SHYIPS-------------VELKEIFRQAAQSLIVTNAHRIVNGEFPVLDDR-QND 516 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 F + K LE +AG + L + R ++ Q+LC + G Sbjct: 517 FFFMNKS-----------LESDIAGL--VIQLAKQRLPDTYGFSPIDDIQVLCPTKMGMA 563 Query: 450 GVAGLNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIARNDSAL----------GLFNG 496 G LN++++ + Q + + + G VM +ND + G+FNG Sbjct: 564 GTKELNKQLQSALNPPSQNKAELKFFDVIFRTGDKVMQTKNDYDVLWTKNNEKGSGIFNG 623 Query: 497 DIGI--ALDR-GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 DIGI ++DR Q + F +G + L E +A+T+HKSQGSE+D + + Sbjct: 624 DIGIIRSVDRFSQNVTIDF---EGRVAIYTSEMLRRLEHAYAITIHKSQGSEYDAVIIPI 680 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 + ++ R L+YT VTRA++ + + + ++ + Sbjct: 681 TAFTHNLLYRNLLYTGVTRAKKMIIVIGTKELVKTMV 717 >UniRef50_UPI00016C0EC6 helicase, RecD/TraA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EC6 Length = 740 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 112/439 (25%), Positives = 198/439 (45%), Gaps = 89/439 (20%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 ++ ALI M + LAAPTG+AA R+ ++ E K T+HRL Sbjct: 349 IIKALIHMVAKLDETVLLAAPTGRAAKRM---------EIATQAETK--------TIHRL 391 Query: 244 L------GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 L SQ + NPL DVL+VDE SM+D+ +M ++ AL + R++ +GD Sbjct: 392 LEIAFNKDKSFESQFFCRNEDNPLETDVLIVDEISMVDIYLMDSILKALRCNQRLVLIGD 451 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 DQL SV AG +L DI + +G + + L++ Sbjct: 452 TDQLPSVGAGNILRDI-----------------------IKSG--------KIKVIRLEQ 480 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED-YIAMLEEALAGYG 416 +R +S I A IN G++ + + DF I+++ ++ + ++ + L Sbjct: 481 VFRQAKESAIIINAHKINHGEEI-IANKEKSDFFIIDEKTQNDVKNTLVDLMTKRLPAKY 539 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPH 473 LD+++ + Q+L +R+G GV LN ++ + K ++ + + + Sbjct: 540 EDLDVMK-------------DVQILVPMRKGLLGVHELNGVMQNALNLKSDDKEEYEYRN 586 Query: 474 SRWYEGRPVMIARN----------------DSALGLFNGDIGIALDRGQGTRVWFAMPDG 517 + + G VM +N D +G++NGD+G+ + + +V DG Sbjct: 587 TLYRVGDKVMQTKNNYNLIWKVPAGSGLVVDEGMGVYNGDMGVIKEIDKYEKVITVEFDG 646 Query: 518 NIK-SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 + + + L E + ++ T+HKSQGSE+ L L S T +++R L+YTAVTRA++ Sbjct: 647 KKRVDYEYANLGELDLSYVTTIHKSQGSEYPIVILPLFSGPTVLLSRNLLYTAVTRAKKM 706 Query: 577 LSLYADERILSAAIATRTE 595 + + + + I+ E Sbjct: 707 VIIVGNRETIRKMISNNKE 725 >UniRef50_D1BM66 Helicase, RecD/TraA family n=3 Tax=Veillonella RepID=D1BM66_VEIPT Length = 717 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 156/563 (27%), Positives = 245/563 (43%), Gaps = 107/563 (19%) Query: 47 GEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR 106 +GH CLP+ +L LL T V +I N+ E LL A+ + + Sbjct: 225 NQGHTCLPVDQLIGR--LDDLLQTDVDDIA---NFIESLLEQGALYSTYYEDILYIYPPE 279 Query: 107 LYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRI 166 +Y++ + T A+++ + D D QK A ++ + Sbjct: 280 MYVSEVEGVHYTREFLLQADPIALDISSFIEKFERDNYITFGDA---QKEAIQLSFFEKF 336 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 S+I+GGPGTGKTT + L+ Q+ G RI L APTG+AA RLTE+ Sbjct: 337 SLITGGPGTGKTTIIKALVKGF-QL--GGLGRIILCAPTGRAAKRLTEA----------- 382 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQR--LRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 +A+T+HRLL GS + +PL +DV+++DEASM+++ + L+ Sbjct: 383 ------TEFEATTIHRLLVPVQGSDSYDFTKNEDDPLDIDVIIIDEASMLNVRLFYSLMA 436 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 A+P A VI +GD DQL + AG VL D Sbjct: 437 AIPKEAHVIIVGDVDQLPPIGAGFVLKD-------------------------------- 464 Query: 345 AASLRDSLCL----LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS 400 L DS C+ L + YR S + I + A AINRG+ ++ V ++F+ I + Sbjct: 465 ---LLDSDCVPYTRLNQIYRQSSGNTIVESAYAINRGEMPNLEGV-SEEFSFIPVK---- 516 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 Y M++ + Y R Q E +L I Q++ +R G G +++ ++Q Sbjct: 517 --SYDMMMKAIIDVYKRE----QETIEDELDI------QIISPMRRGEAGSTLISQYVQQ 564 Query: 461 FMQQKRKIH---RHPHSRWYEGRPVMIARNDSALGLFNGDIGI--ALDRGQGTRVWFAMP 515 + R + G V+ ND L +FNG+IG+ A+ R Sbjct: 565 AVNPPDSYKGEVRVNGITYRVGDKVIQILNDYELEVFNGEIGVIYAITR----------T 614 Query: 516 DGNIKSVQPS-RLPEHET-----TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 D I+ + RLP E +A+TVHKSQGSE+ + + ++ R L+YTA Sbjct: 615 DICIRFIHKEVRLPIDEAHMIMPAYAITVHKSQGSEYGVVIIPFVPRYGGMLQRNLLYTA 674 Query: 570 VTRARRRLSLYADERILSAAIAT 592 VTRA+R++ + + A+ T Sbjct: 675 VTRAKRKVIIVGTTSAVERAVRT 697 >UniRef50_A0LD23 Helicase, RecD/TraA family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD23_MAGSM Length = 742 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 129/465 (27%), Positives = 204/465 (43%), Gaps = 84/465 (18%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A ++++++GGPG GKTT + +I+ A + ++L APTG+AA +L Sbjct: 346 QRQALKTITQDKVAILTGGPGMGKTT----ITRYVIEHAVENKQTVKLCAPTGRAAKQLA 401 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E+ G E A T+HRL+G GS D+LVVDE+SM Sbjct: 402 EATG-----------------EVALTIHRLMGK--GSDE-SVDGQRKFECDLLVVDESSM 441 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D M S L+ LPDH R++ +GD DQL SV AG VL D+ +G ++RLT Sbjct: 442 MDEWMASSLLQMLPDHCRLLLVGDADQLPSVAAGRVLQDLI---QSGVVP-----VARLT 493 Query: 334 GTHVPA-GTGTEAAS---LRDSLCLLQKSYRF-GSDSGIGQLAAAINRGDKTAVKTVFQQ 388 H A G+G + L + + ++F G+ L NR Sbjct: 494 EVHRQAEGSGIALGAVEILHGRRPQMARDFKFVAVTGGMEHLHQCANR------------ 541 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 I+K + G D G + ++ ++ ++A NE Sbjct: 542 MLEGIDKMMRVGGID------------GAEIQVITPMHGTEVGVKALNER---------- 579 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG----IALDR 504 L+E++ + Q +++ + G +M +ND L LFNGD G I+ D Sbjct: 580 -----LHEQLNPY-QAGQEVLELDGFAYRAGCRIMQTKNDYDLELFNGDQGEIVEISKD- 632 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 QG A D K + ++ +A+TVHKSQG +F++ + + ++ R Sbjct: 633 AQGELQVIAKFDEAQKLLDREQMGNIVPCYAITVHKSQGGQFNYVVTPVVTAHGKMLYRN 692 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALFSSR 607 L YT VTRAR+ + L L AI+ + +R +GL + R Sbjct: 693 LFYTCVTRARKGVVLVGSYEALVMAISYKENMQRNTGLLSRIEER 737 >UniRef50_B0TIF8 Exodeoxyribonuclease V, alpha chain, RecD n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TIF8_HELMI Length = 717 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 167/569 (29%), Positives = 240/569 (42%), Gaps = 91/569 (15%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 EGHV LP S L + + E E +N E V+ E + L GD Sbjct: 192 EGHVYLPASELLAQTGNILARSELYPEAPEEKNLHE------QVAEAAEAQVIRLFGDGC 245 Query: 108 YLNRMWCNERTVARFFNEVNHAIE---VDEALLAQTLDKLFPVSDEINWQKVAAAVALTR 164 YL ++ ER VAR ++ E VD + T+++ F + QK A Sbjct: 246 YLPELYRAERVVARVLRRLSEEGEPWPVDVESVIATMEEDFGIR-YAERQKAAFFGVANH 304 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 ++VI+GGPGTGKTT + L+A L+ A I L APTG+AA RL E+ G+ Sbjct: 305 GLTVITGGPGTGKTTIIRGLIA-LVNRAR-PNADIVLCAPTGRAAKRLAETTGQP----- 357 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 A T+H+ LG + G PL DV++VDE SM+D+P+M+ L+ Sbjct: 358 ------------AFTVHKALGLRGGKTDPFWDV-EPLEADVVIVDEVSMVDIPLMAGLLR 404 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 AL AR++ +GDRDQL SV G VL DI + L H+ T Sbjct: 405 ALKKGARLVLVGDRDQLPSVGPGQVLRDIIEHDVGAI----------LRLNHIFRQAETS 454 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 A ++ +S+R S G L R D ++ + +I LLQ+ Sbjct: 455 A--------IVTESHRIRS----GILPDLSGRKDFLFLR---RNSSAEILDALLQTVNRA 499 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN----ERIEQ 460 I AGYG + Q+L +R GV LN E++ Sbjct: 500 IKR-----AGYG------------------LADVQVLSPMRFTEVGVWNLNKLLQEQLNP 536 Query: 461 FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD------RGQGTRVWFAM 514 KR++ H + G VM +N+ +FNGD+G D Sbjct: 537 MNTGKREVKAGDHV-FRTGDKVMQLKNNYEKDVFNGDLGFIEDILLSGEEETDEDTIVVR 595 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 D + S S + +A TVHK+QGSE+ + + Q ++ R LVYTAVTRAR Sbjct: 596 FDEGLVSYGRSEWDQLMLAYATTVHKAQGSEYPVVVMPMTLQHRRMLRRNLVYTAVTRAR 655 Query: 575 RRLSLYADERILSAAIATRTE--RRSGLA 601 + L L+ A+ + R SGL+ Sbjct: 656 EKAILIGMADALAFAVTNEQDAFRYSGLS 684 >UniRef50_D1U587 Helicase, RecD/TraA family n=2 Tax=Desulfovibrio RepID=D1U587_9DELT Length = 736 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 145/513 (28%), Positives = 219/513 (42%), Gaps = 88/513 (17%) Query: 105 DRLYLNRMWCNERTVA-RFFNEVNHAIEVDEALLAQTL----DKL-FPVSDEINWQKVAA 158 D +YL + E + R + V+H V + +TL DKL F +SDE Q+ A Sbjct: 283 DAVYLMHFYHYENEITQRLYQLVSHPTPVSRKKIDKTLPLVEDKLGFKLSDE---QRRAV 339 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 A + ++ +I+GGPGTGKTT ++ L ++ ++ AAPTG+AA R+TE+ G Sbjct: 340 FEACSNKVFIITGGPGTGKTTITKAIMLTLKELG----LTVKQAAPTGRAAKRMTEATGH 395 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 A T+HRLL QP + L DVLV+DEASM+D + Sbjct: 396 P-----------------AHTVHRLLQYQPDGG-FHYCEDQKLKADVLVIDEASMVDAHL 437 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 ++ +LP R+I +GD +QL SV G VL D+ +ER VP Sbjct: 438 FVSILRSLPHTCRLILVGDVNQLPSVGPGNVLADL-------INSER-----------VP 479 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 T ++ ++R S Q D + Q+D ++K +L Sbjct: 480 CAVLTHIFRQAQESFIVVNAHRINSGQFPRQHPCQAPEADFFWIP---QEDSAKVQKLIL 536 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 S + E YG L R + Q+L + +G G LN + Sbjct: 537 DS------VCERIPERYG-----LDPR----------RDIQVLTPMHKGDVGTQALNAAL 575 Query: 459 EQFMQQKRKIHRHPHSR--------WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV 510 Q R PH R + G V+ +N+ +FNGD+G +D + Sbjct: 576 -----QARLNPPGPHVRELKRKFATYRAGDRVIQLKNNYDKEVFNGDLGWIVDVDTEAQE 630 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 DGN + L E +A++VHKSQGSE+ + + +Q ++ R L+YT + Sbjct: 631 LLVEFDGNNVQFEAGELDELGLAYAVSVHKSQGSEYTAVVMPIVTQHYMLLQRNLLYTGL 690 Query: 571 TRARRRLSLYADERILSAAI--ATRTERRSGLA 601 TRAR L ER + AT +R + LA Sbjct: 691 TRARELAVLIGSERAFQIGLNNATAGQRNTNLA 723 >UniRef50_C2E8D7 Exodeoxyribonuclease V alpha chain n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8D7_9LACO Length = 795 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 126/519 (24%), Positives = 221/519 (42%), Gaps = 122/519 (23%) Query: 100 MILCGDRLYLNRMWCNERTVA----RFFNEVNHAIEVDEALLAQTL-------------D 142 +++ G R+Y ++ +E+ +A R N + IE DE + + L D Sbjct: 276 IVIEGKRIYPKSLYNSEQEIAYDLYRLMNNRDEPIEYDEDEIDRCLEDVQTEFSITYGQD 335 Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 +L + D I + I G + ++ L ++ + I+LA Sbjct: 336 QLQAIKDAIKSPVFLLTGGPGTGKTTILRG--------ITEVYMKLNKIDRKDAKGIKLA 387 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH 262 APTG+AA ++ + G DAST+H LLG G++ + + + L+ Sbjct: 388 APTGRAAQKMANATGM-----------------DASTIHHLLGITGGNE-ISANDLDYLN 429 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 +L++DE+SM+D +M L+ +PD +VIF GD++QL SV G V D+ Sbjct: 430 GTLLIIDESSMVDTELMHMLLSCIPDSMQVIFCGDKNQLPSVGPGRVFADML-------- 481 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-------- 374 + Q+ TH+ YR G S I +L+ +I Sbjct: 482 --ESMQIPSKELTHI---------------------YRQGDGSSIVKLSRSIVNGEVPSD 518 Query: 375 ---NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI 431 GD++ +K +Q + KR++Q +L++ Sbjct: 519 LLEKTGDRSFIKCSGEQ-VCSVTKRIVQ------IVLKKG-------------------- 551 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEGRPVMIARND 488 Q+ ++ Q+L + GP G+ LN + M R K + ++ G V+ +N+ Sbjct: 552 -QSADDIQVLAPMYMGPAGINQLNRTLAPLMNPTRLNAKSVESGENEFHIGDRVLQLQNN 610 Query: 489 SALGLFNGDIG--IALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 +FNGDIG IA++ +G+GT + +G ++ + + M++HKSQG Sbjct: 611 PEKNIFNGDIGKIIAINESQKGRGTTMTVRF-EGREVELEQADFLNLTLAYCMSIHKSQG 669 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 SEF L + Q + + R L+YTA+TRA+ +L L + Sbjct: 670 SEFSIVILPMVRQYSRMYARNLLYTALTRAKLKLMLIGE 708 >UniRef50_C6VR87 Exodeoxyribonuclease V, alpha chain n=44 Tax=Bacilli RepID=C6VR87_LACPJ Length = 849 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 117/414 (28%), Positives = 182/414 (43%), Gaps = 84/414 (20%) Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTG+AA R+ E+ G LP AST+HRLLG G + Sbjct: 406 ILLAAPTGRAAKRMAETTG-----LP------------ASTIHRLLGLT-GREDGPEEPS 447 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 L +L++DE SM+D + +L+ A+P H +VI +GD+DQL SV AG V D+ ++ Sbjct: 448 KELDGGLLIIDEMSMVDTVLFQQLLTAIPSHMQVILVGDKDQLPSVGAGQVFHDLLQFS- 506 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 +L ++ T + YR G+DS I LA AI G Sbjct: 507 ---------ELPQIELTTI---------------------YRQGNDSSIIPLAHAIKDGH 536 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN-- 436 A V Q D + I Q ++E+ +A +A+A + F+ Sbjct: 537 LPADFAVNQPDRSFIACNAYQVNH----IVEQVVA---------RAKA------KGFSAE 577 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR----HPHSRWYEGRPVMIARNDSALG 492 E Q+L + G G+ LN +++ + H+ + + G V+ N Sbjct: 578 EVQILAPMYRGTAGIDQLNTTVQKIFNPLKSAHQKHLTYNGQDFRVGDKVLHLVNSPEDN 637 Query: 493 LFNGDIG--IALD-------RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 +FNGDIG + +D + ++ A D N + Q + ++M++HKSQG Sbjct: 638 VFNGDIGKIVGIDLANDSHNESKKDQITIAF-DQNEVTYQRNEWNRLTLAYSMSIHKSQG 696 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 S+F L L Q ++ R L+YTAVTRA + L L D + ++ + R Sbjct: 697 SQFKMVILPLVPQFARMLQRNLLYTAVTRAEQMLILLGDSQSFERSVTNESVNR 750 >UniRef50_C6BXI3 Helicase, RecD/TraA family n=5 Tax=Desulfovibrionales RepID=C6BXI3_DESAD Length = 730 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 112/402 (27%), Positives = 172/402 (42%), Gaps = 68/402 (16%) Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 +I+LAAPTG+AA RL+E+ G+ AST+HR+L P ++ Sbjct: 371 KIKLAAPTGRAAKRLSEATGR-----------------QASTIHRMLQFTPEDGGFYYNE 413 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 L DVLVVDEASM+D + ++ A+P RVIF+GD +QL SV G VL D+ Sbjct: 414 DQKLKADVLVVDEASMLDAQLCLAVLRAVPLTCRVIFVGDVNQLPSVGPGNVLSDLL--- 470 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 ++ Q+ H+ +R +S I A IN G Sbjct: 471 -------QSGQVQSAVLNHI---------------------FRQAQESYIVVNAHRINDG 502 Query: 378 DKTAVKTVF--QQDFTDIEKRLLQSGEDYIA--MLEEALAGYGRYLDLLQARAEPDLIIQ 433 + + DF I + Q +D I + E YG + Sbjct: 503 EFPMPHPADAPEADFYWIPQESTQKVQDMIVQTVCERIPERYG---------------LD 547 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKR-KIHRHPHSRWYEGRPVMIARNDSALG 492 + Q+L + +G G LN +++ + K + + G V+ RN+ Sbjct: 548 PMTDVQVLTPMHKGDVGTQKLNAVLQEKLNPGNGKGLKRGFVEYRVGDRVLQLRNNYEKE 607 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 +FNGD+G + A DGNI + S L E +A++VHKSQGSE+ + Sbjct: 608 VFNGDLGRVMYINTEENELTAEFDGNIVHYELSELDELTLAYAVSVHKSQGSEYPAVVMP 667 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 + SQ ++ R L+YT +TRAR+ L +R + + T Sbjct: 668 IVSQHYMLLQRNLLYTGLTRARKLAVLIGSKRAFTIGLNNVT 709 >UniRef50_Q314D9 ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314D9_DESDG Length = 740 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 123/445 (27%), Positives = 196/445 (44%), Gaps = 96/445 (21%) Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A AL IS+ISGG G+GK+ TV+ ++ A+ + D E + L+APTGKAA RL E Sbjct: 333 AVHSALQHSISLISGGAGSGKSYTVS-VINAVCEECDLE---VVLSAPTGKAAKRLEEVS 388 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 G+ +T+HRLLG S + NP+ D+L++DE SM+D+ Sbjct: 389 GRT-----------------GTTIHRLLGYDGKS--FSKDSNNPIDADILIIDEFSMVDV 429 Query: 277 PMMSRLIDALPDHAR--VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG 334 + L +A+ D AR ++ +GD +QL V G +L D+ ++NA T + + + Sbjct: 430 SLAWHLFNAV-DFARTAIVIVGDHNQLPPVGPGNILRDLI-HSNAIPTVILDKVVRQ--- 484 Query: 335 THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE 394 AG E +S +L+ R SD+ + FTD Sbjct: 485 ----AGVLKE-----NSTAILKGEVRKTSDAST-----------QGCRDWYLADQFTD-- 522 Query: 395 KRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGL 454 A LDL R + L + Q+L +GP G L Sbjct: 523 ----------------PGAARNFLLDLFDKRLDA-LGFDLIKDVQVLTPTHKGPLGTKSL 565 Query: 455 NERIEQFMQQKRKIHRHPHSRWYEGRP------VMIARNDSALGLFNGDIGIALDRGQGT 508 NE +++ +Q++ P ++ P V+ RN+ L + NG IG +D Sbjct: 566 NEDLQRLIQKRLWNVSVPETQLGRRSPFLKHDKVIQTRNNYDLNVMNGAIGHVVD----- 620 Query: 509 RVWFAMPDGN-----------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 +P+G I+ P+ L + + +A+T+HK+QGSEF A +++ Sbjct: 621 ----VLPNGTLLIDFEGVAVEIEKGSPN-LQDIQLAYALTIHKTQGSEFPCAVVVVHKAH 675 Query: 558 TPVVTRELVYTAVTRARRRLSLYAD 582 + + R L+YT VTRAR+ + D Sbjct: 676 SFMHHRNLLYTGVTRARKTAIVLGD 700 >UniRef50_A4JFN0 AAA ATPase n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JFN0_BURVG Length = 858 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 139/491 (28%), Positives = 210/491 (42%), Gaps = 108/491 (21%) Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 + Q+ A V R+++ISG PG GKTT + K +A +++ DG + AAPTGKAA Sbjct: 299 LEQQQQAVEVLFEGRVAIISGKPGAGKTTLL-KCVAPILEK-DGRA--VHYAAPTGKAAK 354 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL-DVLVVD 269 R+ +S I ST+HR+LG G + R NPL +V+D Sbjct: 355 RMRQS-----------------IERPTSTIHRMLGLGRGGAKARPDDENPLKTASAVVID 397 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 EASM+D + ++ ++ ++ +GD QL S+ AG VL D+ +NA TA Sbjct: 398 EASMLDAKLTLAILRSIGPKTLLVLVGDPGQLPSIRAGKVLADLM-DSNAFPTA------ 450 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 RLT R G+ S I ++A AI+ G+ D Sbjct: 451 -RLTNV-----------------------VRQGAQSDIVKVARAIDSGESP--------D 478 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGY--GRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 FT + + LEE A R ++L+ A+ D + + Q++ A G Sbjct: 479 FTLHPDSPPERKKSDCVFLEEPNAQRLGDRIANMLR-NAQVDAKMDPLRDAQVIAASNVG 537 Query: 448 PFGVAGLNERIEQFMQ----QKRKIHRHPHSRWYE-------GRPVMIARNDSA------ 490 P G LN ++ K ++H + + G VM N+++ Sbjct: 538 PTGAVALNATLQAAFNPPEPNKPELHVKRTVKGVDQSFALRFGDKVMQTSNEASKALFDG 597 Query: 491 ----------LGLFNGDIG--IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 G+FNGD+G +A+DR +W +G+ ++A TV Sbjct: 598 PSDRSKPLEEKGIFNGDVGYIVAMDR---VSMWVQFDNGHAHFSNDEARKSLTLSYANTV 654 Query: 539 HKSQGSEFDHAALIL----PSQRTPVVTRELVYTAVTRARRRLSLYADERILSA-----A 589 HK QGSE + LI S P++TR L YTA+TRAR + + ER L+ A Sbjct: 655 HKFQGSE---SPLIFFAMHESTPKPLLTRNLAYTAITRARTKCIVIGSERRLNEAAGRDA 711 Query: 590 IATRTERRSGL 600 +ATR R GL Sbjct: 712 LATRHTRLKGL 722 >UniRef50_Q04EW7 ATP-dependent DNA helicase, RecD/TraA family n=2 Tax=Oenococcus oeni RepID=Q04EW7_OENOB Length = 766 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 117/414 (28%), Positives = 178/414 (42%), Gaps = 78/414 (18%) Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 + LAAPTG+AAAR+TE G+ A T+H LLGA Sbjct: 376 VLLAAPTGRAAARITEVTGRQ-----------------AVTIHHLLGATSDG-YFDFDEN 417 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 N L ++V+DE SM+DL + + A+P+ R++ +GD+DQL SV AG +L D+ Sbjct: 418 NQLQAGLIVIDEMSMVDLQLFQHFLRAVPNGCRLLLVGDKDQLPSVGAGQILTDLIL--- 474 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG- 377 + Q + LQ ++R SGI L+ + RG Sbjct: 475 -------SDQFKTIE---------------------LQINHRQTKGSGIDLLSQDLKRGI 506 Query: 378 -DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 D+ + F +E+ L+ G I+ + A +G + LQ + +++ N Sbjct: 507 VDQKMFENGNDISFFSLEEYQLEQG---ISRILSAAMRFGIKKEDLQIITPTNRLVELLN 563 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 + P+ + + RI+ + + G VM N+ G+ NG Sbjct: 564 QL-------ARPY-LIDRDIRIDDL-----------STAFLAGDRVMQQENNPEKGVNNG 604 Query: 497 DIG--IALDRGQGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 DIG IA R F D GN + + + + ++A TVHKSQGSEF + + Sbjct: 605 DIGYVIATQLSGPLRSRFISVDFLGNTVMYKENEINQLRLSYASTVHKSQGSEFRNVIFV 664 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE-RRSGLAALFS 605 L S VTR LVYT VTRA + L L +R + AI T R++ L L + Sbjct: 665 LTSTFNNFVTRNLVYTGVTRAEKSLILIGSQRAFTDAINNPTPLRQTNLVKLLN 718 >UniRef50_B8FBC1 Helicase, RecD/TraA family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FBC1_DESAA Length = 730 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 103/390 (26%), Positives = 170/390 (43%), Gaps = 45/390 (11%) Query: 212 LTESLGKALRQLPLTDEQKKRIPE----DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 L ++GK++ Q+ T KR+ E DAST+HR L + + + PL DV++ Sbjct: 361 LFSAMGKSVLQVAPTGRAAKRLAEVTSRDASTIHRALAYDFKTGKFFRNEEEPLDADVII 420 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 VDEASM+D +M LI A+P +A +I +GD QL V G L DI Sbjct: 421 VDEASMVDAFLMYHLIKAIPMNAVLILVGDVSQLPPVGPGNALRDI-------------- 466 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 + VP + L K +R + S I + A +N G+ TV Sbjct: 467 ----IESGQVP-------------VFHLTKIFRQAAQSLIIRNAHRVNAGEDLV--TVRD 507 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 Q D + L + +E + L + + R + Q+L + +G Sbjct: 508 QSKEDPDFYFLSEND------QERMVSL--VLTMCRERIPNRFGFDPMTQIQVLTPMHKG 559 Query: 448 PFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG 507 P G LN ++++ + + + G VM +N+ + +FNGDIG + Sbjct: 560 PAGTINLNRQLQKILNPGPDLITRGEQCFRAGDKVMQIKNNYSKEVFNGDIGAITNVSPS 619 Query: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 ++ D S + E +A+++HKSQGSE+ ++L + ++ R LVY Sbjct: 620 SKSVVVEFDAGPVPYTFSEMEELVLAYAISIHKSQGSEYPAVIMLLSTAHYALLQRNLVY 679 Query: 568 TAVTRARRRLSLYADERILSAAIATRTERR 597 T +TRA+R + L ++ +S A+ T R Sbjct: 680 TGITRAKRLMVLVGSQKAVSLAVGNDTPSR 709 >UniRef50_C9KLF6 Helicase, RecD/TraA family n=3 Tax=Veillonellaceae RepID=C9KLF6_9FIRM Length = 740 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 119/412 (28%), Positives = 173/412 (41%), Gaps = 73/412 (17%) Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ----PGSQRLR 254 + L APTG+AA RL E+ G + A T+HR+L AQ G+ Sbjct: 385 VLLGAPTGRAAKRLAEATG-----------------QKAVTVHRMLEAQGAGGSGAPTFG 427 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + L DV+++DE SM+D+ +M + A+PD A VIF+GD DQL SV G VL DI Sbjct: 428 KNEDEQLEADVIILDEVSMMDISLMQHFLAAVPDGAHVIFVGDVDQLPSVGPGTVLRDI- 486 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 L +P S+C L +R +S I A AI Sbjct: 487 -----------------LRSGVIP------------SVC-LTDIFRQKGESSIVMNAHAI 516 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 N G F +I+ EEA+A + L + P Sbjct: 517 NAGRLPVCSPQGDFQFWEIDD-------------EEAVAA---QIVELCTKVLPQQGFSP 560 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSAL 491 + Q+L + G LN+ ++ + K R + + G V+ +N+ Sbjct: 561 LTDIQVLAPMHRLSCGTDNLNKVLQAALNPKSPQRPELTNAAQTFRLGDKVIQTKNNYTK 620 Query: 492 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 +FNGDIG + G R+ D + E +A+TVHKSQGSE+ L Sbjct: 621 QVFNGDIGFVMAIEPG-RMTVHFSDELEVDYENGEFGELALAYALTVHKSQGSEYPVVIL 679 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA-TRTERRSGLAA 602 L T ++ R L+YTAVTRA+R + L + L+ A+ RT +R L A Sbjct: 680 PLVRSHTIMMQRNLLYTAVTRAKREVVLLGSKAALNTAVGNNRTSKRYTLLA 731 >UniRef50_C5B4P9 Putative Helicase, RecD/TraA family n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P9_METEA Length = 866 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 136/461 (29%), Positives = 203/461 (44%), Gaps = 80/461 (17%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ AA A++ I +++GGPGTGKTTTV +L AL + ER ++ +A PTG++A R Sbjct: 449 QRQAAVSAVSEGICILTGGPGTGKTTTVRVILKALQSV---ER-KVAIAGPTGRSAKRAA 504 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 + G STLHR+L + + + PL D L+VDE SM Sbjct: 505 DVTGA-----------------KTSTLHRMLEWEAAAGGFTRNQRRPLQEDHLIVDEFSM 547 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D + + A+ + + +GD DQL SV +G +L D+ A + Sbjct: 548 VDTRLAAAFFQAVAPGSAITIVGDVDQLPSVGSGQILRDLIASGS--------------- 592 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 VP +C L +R +GI A IN G AV FT Sbjct: 593 ---VP-------------VCRLSVVHRQKDGNGIVAAAHNINAGALPAVSAKAADGFTFT 636 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 E Y A G L + R P+ I + Q+L +R+G GV Sbjct: 637 EA--------YGAN------GISEQLVRMVTRDLPERGIDVSRDVQILAGMRQGEIGVTK 682 Query: 454 LNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI-----ALDRG 505 LNE ++ + + + R H + G VM RN+ ++NG++G + RG Sbjct: 683 LNEILKATLNPAAEDGRTVRLGHRLFTVGDRVMQMRNNYEKKVYNGEVGQICWVGEVKRG 742 Query: 506 QG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 + T + P G+ + + WA TVHKSQG EF ++P+ +++ Sbjct: 743 EKEMVTAIRVEYP-GDQVVYTAEDADDIDYAWATTVHKSQGCEFPVVLFVVPNSHQSILS 801 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLA 601 R L+YTAVTRA++ L D R L +AIA T R +GLA Sbjct: 802 RNLLYTAVTRAKQECHLVGDGRALRSAIAKADTTRRYTGLA 842 >UniRef50_Q1WTZ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Lactobacillus salivarius RepID=Q1WTZ7_LACS1 Length = 824 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 120/417 (28%), Positives = 172/417 (41%), Gaps = 85/417 (20%) Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTG+AA R+ ES G LP AST+HR+LG +L Sbjct: 403 ILLAAPTGRAAKRMAESTG-----LP------------ASTIHRMLGINAHDDKLPEDI- 444 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 L +L+VDE SM+D +M L++++P H +VIF+GDR+QL SV+ G V D+ Sbjct: 445 QELEGALLIVDETSMVDTLIMDLLLNSIPSHMQVIFVGDRNQLPSVQPGQVFSDL----- 499 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 L +P L K YR G S I LA +I G+ Sbjct: 500 -------------LVSDALPKKE-------------LTKIYRQGEGSSIINLAHSIKNGE 533 Query: 379 KTAVKTVFQQD--FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 A T Q D F E L S + + +A G D Sbjct: 534 LPADFTKAQSDRAFIPCEAGQLTSA---VEQVVKAALNKGNSKD---------------- 574 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQ-----QKRKIHRHPHSRWYEGRPVMIARNDSAL 491 + Q+L + G G+ LN +++ + QK I R G V+ ND Sbjct: 575 DIQVLAPMYRGNVGINRLNTILQELLNPANPRQKEVIFNEQVFRI--GDRVLHLVNDPEN 632 Query: 492 GLFNGDIGIAL-------DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 +FNGDIG + + + A DGN + + M++HKSQGS Sbjct: 633 NVFNGDIGKIVGINIPKTKKDKKGEQIIADFDGNEVTFDKKDWINLTLAYCMSIHKSQGS 692 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAIATRTERRSGL 600 EF L + Q + R L+YT +TRA+++L L + +A R++GL Sbjct: 693 EFPIVVLAMLPQYQRMFARNLLYTGITRAKQKLVLLGNVSSFRQSAEIISLNRKTGL 749 >UniRef50_B8J4Q4 Helicase, RecD/TraA family n=9 Tax=Bacteria RepID=B8J4Q4_DESDA Length = 749 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 109/416 (26%), Positives = 178/416 (42%), Gaps = 63/416 (15%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 ++ A+I++ R RI LAAPTG+AA R+ E+ G+ R T+HRL Sbjct: 382 IINAIIRLFAEVRARILLAAPTGRAAKRMAETSGRESR-----------------TIHRL 424 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 L P + +PL +LVVDEASM+D + L+ A+P A ++ +GD QL S Sbjct: 425 LEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVGDVHQLPS 484 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V G VL DI A +G VP TE +R + Sbjct: 485 VGPGNVLADIIA-----------------SGV-VPVVELTEI-------------FRQSA 513 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQ--DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 +S I A INRG+ ++++ + DF I + + D + +DL Sbjct: 514 ESEIICNAHLINRGEVPSLESSKDRLSDFYFIHQNDPEKAADLM-------------VDL 560 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 ++ + ++ Q+L + +G G +N R+++ + R + Sbjct: 561 VRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEALNPNGLEVRRGERAFRLHDK 620 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 VM RN+ +FNGD+G R D + + L E +A+++HKS Sbjct: 621 VMQIRNNYDKDVFNGDMGRISFLDLADRTLSVTFDERVVPYEFDELDELAPAYAISIHKS 680 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 QGSE+ + + Q ++ R L+YT TR ++ + L + R L A+ R+ Sbjct: 681 QGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVGESRALHMAVKNNKTRK 736 >UniRef50_B1C665 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C665_9FIRM Length = 737 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 136/503 (27%), Positives = 226/503 (44%), Gaps = 120/503 (23%) Query: 141 LDKLFPVSDEIN------WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 DKL +EIN QK A A+ ++S+I+GGPGTGKTT + ++ L + G Sbjct: 306 FDKLIKKYEEINEINLDKTQKEAVISAIKSKVSIITGGPGTGKTTIINAIIYILGSI--G 363 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ--- 251 E+ L APTG+AA R++ES +A T+HRLL + + Sbjct: 364 EKYT--LTAPTGRAAKRMSEST-----------------KSEAKTIHRLLEYEYTLEDDH 404 Query: 252 --RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 + N + D +++DE SM+D+ + + A+ + ++F+GD DQL SV AG V Sbjct: 405 FLSFGKNEDNTIDSDYIIIDEMSMVDISLFDAFLKAVKNKTSLLFVGDIDQLPSVGAGNV 464 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 L D+ ++ P + L YR +S I Sbjct: 465 LSDL------------------ISSEIFP-------------VTKLDTIYRQDKESLIIT 493 Query: 370 LAAAINRG----------DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 A IN+G D + T+ Q+ I++ +L +Y RY Sbjct: 494 NAHRINKGKMPILKKEADDFYFINTITQE---KIKRNILNIVYNY------KNTPLKRY- 543 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM----QQKRKIHRHPHSR 475 DLL+ ++Q++ L++G GV+ LN+ ++ + K +I +H + Sbjct: 544 DLLK-------------DFQIISPLKKGLAGVSELNKSVQDILNPAHNTKNEI-QHGSTT 589 Query: 476 WYEGRPVMIARNDSAL------------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQ 523 + E VM +N+ + G+FNGD+GI + + + D + + Sbjct: 590 FRENDKVMQIKNNYQIKWTDINTLKKGEGVFNGDMGIIKKIDKEKQTLEIIFDDEKRVIY 649 Query: 524 PS-RLPEHETTWAMTVHKSQGSEFDHAALILP--SQRTPVVTRELVYTAVTRARRRLSLY 580 P ++ E ++A+TVHKSQGSEF A+I+P S + + R L+YTAVTRA+ + L Sbjct: 650 PKEQMEELNLSYAITVHKSQGSEF--KAIIIPIFSGYSGFLNRNLLYTAVTRAKEMVILI 707 Query: 581 ADERILSAAIAT--RTERRSGLA 601 + L + I + + +R++ LA Sbjct: 708 GEVNGLKSMIKSVQKNKRKTTLA 730 >UniRef50_Q03EZ9 ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EZ9_PEDPA Length = 814 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 129/465 (27%), Positives = 207/465 (44%), Gaps = 88/465 (18%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAP 204 Q A +AL+ +++I+GGPGTGKTT V L+ + ++ D + I+LAAP Sbjct: 348 QNAAIELALSHPLTIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESKFPIQLAAP 407 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG+AA RL+ Q +P A T+HRLLG G+ L++ L D Sbjct: 408 TGRAAKRLS---------------QVTNVP--AKTIHRLLGLN-GNDDLQNDEIKQLEGD 449 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 +LV+DE SM+D + S L++A+ +V+ +GD+DQL SV G + D+ Sbjct: 450 LLVIDEMSMVDTGLFSTLVNAINPDMQVVLVGDKDQLPSVGPGQIFNDL----------- 498 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 + +P L K YR DS I QLA I +G Sbjct: 499 -------IKSGKIPT-------------ISLTKIYRQEQDSSIIQLAHDIQKG------- 531 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP--DLIIQAFNEYQLLC 442 V +DFT +K + + LA + +D + A+ D I N+ Q+L Sbjct: 532 VLPEDFTKNKK-----DKSFF------LANANQIVDAIDQIAQKAVDKGISK-NDIQVLA 579 Query: 443 ALREGPFGVAGLNERIEQFMQ----QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 + G GV +N +++ + K K + + G V+ N +FNGDI Sbjct: 580 PMYRGSAGVDEINRHLQKVLNPPQTDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDI 639 Query: 499 ----GIALDR-GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 GI +++ G+G DGN + + L + + +++HKSQGSEF + + Sbjct: 640 GEITGIVMEKQGKGRAHLVVDYDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPM 699 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 Q ++ R L+YT +TRA + L + A++ + R+ Sbjct: 700 VHQYYRMLQRNLLYTGLTRASNSIILLGEPDAYQRAVSNESSNRN 744 >UniRef50_B1MY70 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=3 Tax=Leuconostoc RepID=B1MY70_LEUCK Length = 799 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 142/528 (26%), Positives = 235/528 (44%), Gaps = 109/528 (20%) Query: 105 DRLYLNRMWCNERTVARFFNEVNHA-IEVDEALLAQTLDKLFPVSDEI---NWQKVAAAV 160 D++Y ++ E VA+ + HA +D L A +D F ++ + Q A Sbjct: 284 DKIYATTLYVAENQVAQHLTRLVHAPAPID--LTAADVDSGFDTPSQLILDDTQIAAVKA 341 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAA---LIQ----MADGER-----CRIRLAAPTGKA 208 L ++ +++GGPGTGKTT V ++A ++Q AD + +++A+PTG+A Sbjct: 342 GLNAQVFLLTGGPGTGKTTIVKSIVATWQKILQHHAKFADNAQDFLKLYAVKMASPTGRA 401 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP-GSQRLRHHAGNPLHLDVLV 267 A R+TE G DA+T+HRLLG G + NP+ +L+ Sbjct: 402 AKRMTEVTG-----------------HDATTIHRLLGITDLGEPEFDNE--NPISGGLLI 442 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DEASM+D+ + ++L+ A+P ++I +GD DQL SV G VL D+ N+G Sbjct: 443 IDEASMLDIELTAKLLAAIPSGMKLIIVGDSDQLPSVGPGNVLADLV---NSGILP---- 495 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 H+ L+ YR G S I LA I G Sbjct: 496 --------HIE----------------LETIYRQGRGSSITALAQNIKSGR-------LP 524 Query: 388 QDFTDIEKRLLQSGED---YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 +DF L++ D ++ E+A + ++QA + + ++ Q+L + Sbjct: 525 EDF-------LENKHDRSTFMVSPEQAETAIKQ---VVQAAIKKNY---TQDDLQILTPI 571 Query: 445 REGPFGVAGLNERIEQFM---QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 + GV LN + + +K + H+ + +G V+ NDS ++NGD+G Sbjct: 572 YKTSAGVLTLNTMAQALFNPEKATKKSLQFGHTYFRKGDKVLQLENDSERDVYNGDMGTI 631 Query: 502 L------DRGQGTR-----VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 + D+G V F DG + L + +A TVHK+QG+EF Sbjct: 632 IAVQSKQDKGNEDHEDRLVVDF---DGKELAYTKKDLSQLTLAYATTVHKAQGNEFKLVI 688 Query: 551 LILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 ++L SQ ++ R L+YT +TRA+ L L D + + A T +R+ Sbjct: 689 MVLTSQFGLMLNRNLLYTGITRAKEALILVGDYQAFNRAAKTPVPQRA 736 >UniRef50_C1XYZ4 Putative uncharacterized protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYZ4_9DEIN Length = 641 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 134/502 (26%), Positives = 214/502 (42%), Gaps = 110/502 (21%) Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEAL--LAQTLDKLFPVSDEINWQKVAAAVALT 163 RL L R E+ +ARFF + + L Q +L+P +E + Sbjct: 226 RLGLTRYVQAEQAIARFFRRRPAPLRLAPPPAGLTQEQRQLWPRVEEGH----------- 274 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 ++++GGPGTGK+ T A AL++ A R + L APTGKAA RL+E Sbjct: 275 ---ALLTGGPGTGKSYTCA----ALLEAAHRARLEVVLLAPTGKAAVRLSE--------- 318 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 L D Q A T+H LG +R H +PL D++VVDEASM D+ +++ L+ Sbjct: 319 -LADHQ-------AHTIHARLGWD--GERFAHGPHHPLSADLVVVDEASMADVELLAALV 368 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE-RARQLSRLTGTHVPAGTG 342 AL H ++ +GD DQL V GA D+ G T + R QL R H Sbjct: 369 AALSPHTHLLLVGDADQLPPVGPGAPFQDLL----RGPTPQVRLTQLQRRAREH------ 418 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 + + SY+F + GQL + + RL ++ + Sbjct: 419 ----------PVTRLSYQFRA----GQLEPPHSE--------------EGLSWRLGETSQ 450 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 +LE+ +G+ +Q+L + GP G+ LN + Sbjct: 451 VLQWLLEDTQRLWGK------------------TRFQVLAPVYRGPLGIEALNRVL---- 488 Query: 463 QQKRKIHRHPHSRWY-------EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMP 515 K +++ + W G P++ RND ALGL NG + + + + + Sbjct: 489 --KERLNPGGYPDWRLGGLPVAPGDPLIQLRNDYALGLANGQL-MEVQSADAQSLLVRLD 545 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 DG+ K + S+ +A+++H+SQGS++ L++ + V RE++YT +TR++ Sbjct: 546 DGSYKPIPRSQSRHLRHAFAISIHRSQGSQWPCVLLVVSREHGAFVNREMLYTGLTRSQH 605 Query: 576 RLSLYADERILSAAIATRTERR 597 LY A+A R R Sbjct: 606 SAILYGQLEAYRDALARRASGR 627 >UniRef50_B8I4C3 Exonuclease V subunit alpha n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I4C3_CLOCE Length = 813 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 124/500 (24%), Positives = 197/500 (39%), Gaps = 114/500 (22%) Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAA 210 + QK A + +++G G+GKTTTV ++ L + + E LAAPTGKAA Sbjct: 372 SMQKEAVKAVFNTNMLILTGSAGSGKTTTVECMIYVLQRYFEKQEEMSFMLAAPTGKAAK 431 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 RLTE G +A TLHRLL ++ + GN L D++VVDE Sbjct: 432 RLTEITGF-----------------EAMTLHRLLQFSYENKGFFYRQGNELPYDLIVVDE 474 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 +SM+ + + L A+ V+ +GD Q+ SV AG VL D+ Sbjct: 475 SSMLSIDLAHALFTAISPGTTVVLIGDTQQIPSVGAGNVLDDM----------------- 517 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 + +P D ++ + R + G++ IN + V + D Sbjct: 518 -IKSGVIPTVKLNVIKRQEDGSGIIFNANRIIN----GEMPEIINANKDFFI--VEEDDK 570 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG 450 + KR L++ L + GY +D + Q++C + G Sbjct: 571 NRVIKRTLEA-------LNRLMTGYNYTID----------------DVQVICPQKTSELG 607 Query: 451 VAGLNERIEQ------------------FMQQKRKIH-------RHPHSRWYEGRPVMIA 485 +N+ I++ F Q + IH H H GR + Sbjct: 608 TYEMNKAIQEMVNPAAAGKAEVKRGNSVFRQGDKVIHLNNNYEATHYHKDAKTGRYIA-- 665 Query: 486 RNDSALGLFNGDIGIALDRGQGTRVWFAMPDGN------------------IKSVQPSRL 527 D G+FNGDIG ++ + + DG I Q + L Sbjct: 666 --DEGSGVFNGDIGRIIEISKIGEIDQESEDGEAAGDNNTEEKVAVQYDEFIIIYQINEL 723 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 E + +++TVHK QGS+ + A + + ++ R L YTAVTRA+R + + +S Sbjct: 724 EEIDLAYSLTVHKMQGSQCEAAIFLCHLRNYIMLNRNLGYTAVTRAKRMACIIGQRKAIS 783 Query: 588 AAI--ATRTERRSGLAALFS 605 + T+R + LA L S Sbjct: 784 VMVQNVKVTQRNTMLADLLS 803 >UniRef50_B3E889 Exodeoxyribonuclease V n=2 Tax=Bacteria RepID=B3E889_GEOLS Length = 1214 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 141/526 (26%), Positives = 211/526 (40%), Gaps = 143/526 (27%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q A R ISV+ G GTGKTT + ++ A I+ A G L APTGKAA R+ Sbjct: 584 QAAVCAKIFNRPISVVCGAAGTGKTTIIRSIIQA-IEKAHGTDATFLLLAPTGKAADRIR 642 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLL---GAQPGSQRLRHHAGN-PLHLDVLVVD 269 E GK +AST+H L G + L+H G + V+D Sbjct: 643 EKTGK-----------------EASTIHSFLARRGWLNPNLTLKHSGGQREDQVTTFVID 685 Query: 270 EASMIDLPMMSRLIDALPDHA--RVIFLGDRDQLASVEAGAVLGDICAY------ANAGF 321 EASM+DL +++ + A+ A R+I +GD +QL + G V DI + A+ G Sbjct: 686 EASMLDLELLAAVFRAINWSAVQRIILVGDPNQLPPIGRGKVFADIIEWLRKNHPASIGE 745 Query: 322 TAERARQL-SRLTGTHVPAGTGT-----------------EAASLRDSLCLLQKSYRFGS 363 RQ+ +RLTG GTG E S+R L +LQ+ Sbjct: 746 LTVNLRQMENRLTGK----GTGILDLASIYVRNPNRDQKDEEESIRAEL-MLQRLQDLPP 800 Query: 364 DSGIGQ-LAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL---AGYGRYL 419 D + + L +G + + + D+E+ SGE + AL A G+ Sbjct: 801 DGTVDKDLRVIYWKGADDLLSKIVNRIVADMEE---DSGEKFNPEAAHALWLAATRGK-- 855 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ------------------- 460 + PD +Q++ R FG +N RI+Q Sbjct: 856 ---EKNPRPDY-------HQVISPYRHEDFGTEAINLRIQQEARGVGMRRVGLLAGLTLF 905 Query: 461 --FMQQKRK-----IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI----ALDRGQ--- 506 +Q + + I + H R + +FNG++G ALD + Sbjct: 906 DKVIQVRNRGASDAIWAYNHQ----------TRQNERSSVFNGELGFVVPHALDGSKWQV 955 Query: 507 -------------------------GTRVWFAMPDGNIKSVQPSRLPEH--ETTWAMTVH 539 G + +AM +G K P PE E +A++VH Sbjct: 956 PEKTYYRIKRFQVRFSRKEHLAFAYGKELGYAM-EGTKKRYLPDEKPEDNLELAYAISVH 1014 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 KSQGSEF+ +LP Q+T +++ EL YT +TRA R ++ +E I Sbjct: 1015 KSQGSEFERVYFVLPKQKTALLSPELFYTGITRATRHCTVLIEEDI 1060 >UniRef50_Q2SS34 Helicase, RecD/TraA family, putative n=3 Tax=Mycoplasma mycoides group RepID=Q2SS34_MYCCT Length = 731 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 117/454 (25%), Positives = 202/454 (44%), Gaps = 81/454 (17%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK+A + +IS+I+GGPGTGKTT + +++ ++ I PTG+AAA++ Sbjct: 333 QKLALKNFVKNKISIITGGPGTGKTTIIKAIVSLFEKVYHSTNYAI--CTPTGRAAAKIR 390 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E+ + +A+T+H+LLG + + L + +PL D+L+VDE SM Sbjct: 391 ENFYDS----------------NATTMHKLLGYEKDKKFLINQ-DHPLDYDLLIVDECSM 433 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ID + S+ ++ +++ +GD DQLASV G V DI + Sbjct: 434 IDARLFSQFFLSINKAKKIVLIGDVDQLASVSYGNVFFDIIS------------------ 475 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 ++V + T L + +R D+GI LA I + D D+ Sbjct: 476 -SNVLSTTN------------LTQIHRQNLDNGIIDLAYMI------------KNDNFDL 510 Query: 394 EK-RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 K L++ E Y ++ L+ ++ E ++ QA Q++ + G+ Sbjct: 511 NKLNSLKNVECYFNKDKDWC------LEKVKEIYEKNINNQA--NIQVISPVYADILGIE 562 Query: 453 GLNERIEQFMQ----QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT 508 LN I+ I+ R+ VM +NDS L L NGDIG + + T Sbjct: 563 NLNNFIQYNFNLNILDTNNIYDRLRFRYAINDKVMYLKNDSELNLSNGDIG-YISQINKT 621 Query: 509 RVWFAMP----DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ-RTPVVTR 563 F+ + N + + ++ +VHK+QGSE+D L+L + + + Sbjct: 622 NNKFSSAIINFNNNFLEFSSEQFDDISLSYCCSVHKTQGSEYDKVILVLQNTLFNTFINK 681 Query: 564 ELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 +L+YTA+TRA+++L + D + I + + R Sbjct: 682 KLLYTAITRAKKQLFIIGDYDLFLLGINKQAKLR 715 >UniRef50_C2KY21 Possible exodeoxyribonuclease V alpha subunit n=1 Tax=Oribacterium sinus F0268 RepID=C2KY21_9FIRM Length = 759 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 126/451 (27%), Positives = 191/451 (42%), Gaps = 109/451 (24%) Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL---G 245 +Q+ G+ I LAAPTG+AA R+ E+ TD A TLHRLL G Sbjct: 356 LQLFTGQGKSIALAAPTGRAAKRMGEA----------TDY-------PAKTLHRLLEYMG 398 Query: 246 AQPGSQR------LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 + Q + + NPL DVL+VDE SM+DL +M L+ A+P R+I +GD + Sbjct: 399 REDQEQEDRDFSLFQRNEENPLEYDVLIVDEMSMVDLYLMDALLRAIPVGCRLILVGDSE 458 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL----L 355 QL SV AG VL DI A S C+ L Sbjct: 459 QLPSVGAGNVLKDIIA-----------------------------------SQCMKTISL 483 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 +K +R +S I A IN+G IE L + +D+ + + Sbjct: 484 KKIFRQAMESDIVVNAHKINQG---------------IEPDLGKKSKDFFFIRGQEPKQI 528 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRHP 472 + +L P + Q++ ++G GV LN +++ + + + + Sbjct: 529 LENIAILMKEKLPKYLSTDPLSIQVMSPQKKGLLGVENLNRFLQERLNPPGKNKPEYEGS 588 Query: 473 HSRWYEGRPVMIARNDSAL----------------GLFNGDIG--IALDRGQGTRVWFAM 514 + + G VM +ND L G+FNGDIG ++ Q T F Sbjct: 589 GNIFRLGDKVMQIKNDYQLAWEIPGNFNLPIESGEGVFNGDIGKITEINAYQKTVTVFFE 648 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP--VVTRELVYTAVTR 572 + S Q L E +A+T+HKSQGSE+ A++LP P +++R ++YTA+TR Sbjct: 649 ERKVVYSFQD--LENLELAYAITIHKSQGSEY--PAVLLPMYPGPKMLMSRNILYTAITR 704 Query: 573 ARRRLSLYADERILSAAIATRTE--RRSGLA 601 A+ + L ++ + E R SGLA Sbjct: 705 AKSCVCLLGQPKVFLEMLHNEQELKRYSGLA 735 >UniRef50_Q97JX9 Exodeoxyribonuclease V, Alpha subunit, RecD n=1 Tax=Clostridium acetobutylicum RepID=Q97JX9_CLOAB Length = 726 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 124/504 (24%), Positives = 199/504 (39%), Gaps = 105/504 (20%) Query: 122 FFNEVNHAI-EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 F N V H I E++ L + DK + +IN I V++G GTGK++ Sbjct: 302 FTNNVIHLIPEIERILRIKYDDKQKELFYKIN----------ENNILVLTGFAGTGKSS- 350 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 +L L+ + D + +L +PT KAA R+ E GK AST+ Sbjct: 351 ---VLNGLLNLFDKKNITYKLMSPTAKAAKRMEECTGKK-----------------ASTI 390 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HR LG G + + NP DV+++DE SM+D+ + ++ + + +++ LGD Q Sbjct: 391 HRALGLAEG--KFLVNEKNPFAEDVIIIDETSMVDIYLFLAVLKGIKNTTKLLCLGDYGQ 448 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL-LQKSY 359 L S+ AG VL D+ + G C+ L+K + Sbjct: 449 LESISAGNVLFDM-----------------------IQGGIP----------CVKLEKIF 475 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR-- 417 R DS + + I GD T K L+ G D L + R Sbjct: 476 RQKEDSSLLNVITNIRNGDNPLKNT---------HKTYLELGRDCKFWLGKKEQTLSRVL 526 Query: 418 --YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 Y + L+ + D+++ LC +++G GV LN+ +++ + Sbjct: 527 LCYKECLKHFSREDIMV--------LCPMKKGNSGVNKLNQELQKIANSQNTEELKLKDC 578 Query: 476 WYEGRP-VMIARNDS-------------ALGLFNGDIGIALDRGQGTRVWFAMPDGNIKS 521 Y+ VM +ND A G+FNGD G + + D I Sbjct: 579 AYKKEDLVMHIKNDYNANIFSEDCKDTIAKGIFNGDAGKIEKIDLENQKLYVSYDSGIVE 638 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 S L E ++A+T+HK QGS+ + L ++ R L+YTA +R L Sbjct: 639 YDNSNLNELMLSYALTIHKVQGSQSKVVIVALDMSHYKMLKRSLLYTAASRCVELLIFIC 698 Query: 582 DERILSAAIATR--TERRSGLAAL 603 D + S A+ T + + L L Sbjct: 699 DPKAFSIALNNNQVTHKNTFLGEL 722 >UniRef50_Q98PE1 EXODEOXYRIBONUCLEASE V ALPHA CHAIN n=1 Tax=Mycoplasma pulmonis RepID=Q98PE1_MYCPU Length = 694 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 104/453 (22%), Positives = 186/453 (41%), Gaps = 86/453 (18%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE--RCRIRLAAPTGKAAAR 211 QK AA + L +S+++G PG+GKT T+ +L ++I + + + I + APTGKAA + Sbjct: 301 QKEAATLCLKNSVSILTGYPGSGKTKTLKSILESIISDENKKVKKSNIAIMAPTGKAALQ 360 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E G +A T+H L +P + + + H+++LV+DE Sbjct: 361 IFEKTG-----------------FEAKTIHSFLKLKPKATEVSFFDVDFDHIEILVIDEF 403 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+ + + ++ L ++I +GD QL ++ AG +L D+ N + R Q+ R Sbjct: 404 SMVTVDLFFLILSTLSSIKKIIIVGDHRQLPAIGAGNLLEDLLELQNI--SVNRLSQIFR 461 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA--INRGDKTAVKTVFQQD 389 + + ++ +QK F ++S A N DK + Sbjct: 462 -----------NKTKDISENFLNVQKKIPFENNSENVNFIEANDTNFFDKIS-------- 502 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 + E L+ Y D+L+ I+ FN+++ Sbjct: 503 ----------------KLYFEDLSNY----DVLEKT-----ILIPFNKFET--------- 528 Query: 450 GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD-----R 504 G N I QK+ ++ + G VM N+ G++NG+IGI + Sbjct: 529 GAHKTNLHI-----QKKLFKKNDLKNFAIGDKVMQIENNYEKGVYNGEIGIIEKFVEKVK 583 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 + V+ D I +A TVHK QGSE ++ +TR+ Sbjct: 584 DKDKEVYINFGDKKINYSLEELNKNISLAYATTVHKFQGSESKIVIFVIFPILMNFLTRK 643 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRTERR 597 ++YTA +RA +L + + L+ I +++ Sbjct: 644 MIYTAFSRAVDKLYIIGSKSALNEVIMFSKDKK 676 >UniRef50_D2ELG1 RecD/TraA family helicase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELG1_PEDAC Length = 836 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 129/468 (27%), Positives = 206/468 (44%), Gaps = 87/468 (18%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAP 204 Q A +AL+ I++I+GGPGTGKTT V L+ + ++ D + I+LAAP Sbjct: 354 QNNAIRMALSHGITIITGGPGTGKTTIVKGLINSFAELHDLDLDPNANPDQDYPIQLAAP 413 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG+AA RL+E G +P A T+HRLLG G+ L L + Sbjct: 414 TGRAAKRLSEVTG---------------VP--AKTIHRLLGLN-GNDDLHDEQIQELRGE 455 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 +LVVDE SM+D + + LI A+ +V+ +GD+DQL SV G V D+ Sbjct: 456 LLVVDEMSMVDTGLFNTLISAINAEMQVVLVGDKDQLPSVGPGQVFSDLI---------- 505 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 R++++ ++ L K YR DS I Q+A +I G+ T Sbjct: 506 RSQKIPTIS---------------------LTKIYRQEQDSSIIQMAHSIQNGEMPDDFT 544 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCA 443 + D + I+ Q + + E A+A G + N+ Q+L Sbjct: 545 QNRPDKSFIKASAYQVVDAIDQIAERAVARGLSK------------------NDLQVLAP 586 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIH----RHPHSRWYEGRPVMIARNDSALGLFNGDIG 499 + G G+ +N +++ + + H H ++ G V+ N +FNGDIG Sbjct: 587 MYRGAAGIDEINRHLQRVLNPPQTDHPKYLEANHQQFRIGDKVLQLVNAPENNIFNGDIG 646 Query: 500 -----IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 + G+G DGN + + L + + +++HKSQGSEF L + Sbjct: 647 EITGIVTEKAGKGHAQLIVDYDGNEVTYGKNDLNQLTLAYCVSIHKSQGSEFPVVILPMV 706 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT-ERRSGLA 601 Q ++ R L+YT +TRA + L + A+ + R++GL Sbjct: 707 RQYYRMLQRNLLYTGLTRASDSIILLGEVEAYQRAVQNESANRQTGLV 754 >UniRef50_Q6KIJ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Mycoplasma mobile RepID=Q6KIJ7_MYCMO Length = 734 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 105/511 (20%), Positives = 205/511 (40%), Gaps = 132/511 (25%) Query: 128 HAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 H +++ + ++TLD + QK A +L ++ISG PG+GK+ + ++ Sbjct: 314 HTFNLEKIINSKTLDSI---------QKEAIIYSLNNSFNIISGIPGSGKSAIIKRIYKK 364 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 ++ E I + PTGKA L ++ ++A T+H L Sbjct: 365 AKEIYKDEE--IHVLTPTGKATIILKQN------------------NQEAKTIHSFLKWN 404 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 + + N H+ V+++DE SM+D + S L+ +P+ ++I +GD +QL S++ G Sbjct: 405 KDNNQFDFKTINYDHVKVIIIDEFSMVDTYVFSTLLKVVPNLEKLILVGDYNQLPSIKGG 464 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 +L D+ E+ + + L+ +YR Sbjct: 465 QILKDLI-----------------------------ESNLFK--VFFLKTNYR------- 486 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI--------AMLEEALAGYGR-- 417 Q+D DI K L +D I LE + Y Sbjct: 487 -------------------QKDKFDIMKNALMVNDDLIPTFNSENTLFLEASSENYFNKL 527 Query: 418 --YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-----KRKIHR 470 YLDL + + N +L EG G+ +N+ ++ + Q+ + ++ Sbjct: 528 TTYLDLFIEKHHNYTFFETMNLINILSVKYEGYGGINEINQSLQNYFQRHYFKDNQPFYK 587 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIG---------------IALDRGQGTRVWFAMP 515 P+ + + V+ ND ++NG++G I++D G + Sbjct: 588 TPNLKLFINDKVIQIENDPENDVYNGELGFINNVKLKENKEIDLISVDFGNKIITY---- 643 Query: 516 DGNIKS-VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 N+ + +Q +L +A++VHK QGS + ++ + +++++L+YTA +RA+ Sbjct: 644 --NLNNFLQSVKLA-----YAISVHKFQGSASEILIFLIFKNQKKLLSKKLIYTAFSRAK 696 Query: 575 RRLSLYADERILSAAIATRT--ERRSGLAAL 603 L + + S ++A +R++ L L Sbjct: 697 SFLIVIGEHEAFSISVAKENNLDRKTYLRYL 727 >UniRef50_A5ZS54 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZS54_9FIRM Length = 2375 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 126/466 (27%), Positives = 200/466 (42%), Gaps = 89/466 (19%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+VA IS+I+GGPG GKTT + ++A +Q A + I L APTG A R+ Sbjct: 1972 QQVAVKNVFENPISIITGGPGRGKTTVIRFIIA--VQEALDKNAVILLCAPTGIARRRMR 2029 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLG--AQPGSQRLRHHAGNPLHLDVLVVDEA 271 E + P A T+H+ +G + G + ++ P+ D+++ DE Sbjct: 2030 EC-----TEYP------------ALTIHKSIGLTGEAGEEEWKNE--QPIPDDLIIADEF 2070 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+D+ + +L ++ AR++ +GD+DQ+ SV G V +I Sbjct: 2071 SMVDMYLADKLFSSIKSGARLVLVGDKDQIESVGPGKVFQEI------------------ 2112 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 + +G + +L + +R +S I Q A IN K + VF F Sbjct: 2113 -----IDSGVF--------PVTVLDECFRQEGNSTISQNAIKIN---KNQLDLVFDDTFQ 2156 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR-EGPFG 450 I + I + ++LQ + E Q++ LR + G Sbjct: 2157 FIPASTPEEASRKIQKIYRK--------EVLQRNG-------SLEEVQVMSPLRKDTEAG 2201 Query: 451 VAGLNERIEQFMQQKRKIH---RHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL----- 502 LN + KR + + + + EG VM +N+ + NGDIG + Sbjct: 2202 TDALNLVLRDIANPKRFGYPEITNGRNTYREGDRVMQTKNNDEVA--NGDIGEVIGIFRK 2259 Query: 503 DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL-ILPSQRTPVV 561 D+ RV F DG + Q +A+TVHK+QGSE+ A L +LP R ++ Sbjct: 2260 DQKMVMRVDFG--DGRVMEYQEEDYWPLTLAYAITVHKAQGSEYPMAILPMLPCFRW-ML 2316 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSR 607 R + YTAVTRAR R + +R ++ AI RT+ S +F R Sbjct: 2317 RRNIFYTAVTRARERFIIVGSKRAIAQAI--RTDYISRRNTMFGYR 2360 >UniRef50_C7H0P7 Helicase, RecD/TraA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0P7_9FIRM Length = 741 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 139/516 (26%), Positives = 224/516 (43%), Gaps = 126/516 (24%) Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIE----------VDEALLAQTLDKLFPVSDEINW 153 G R+Y M+ E +A + ++++ A +DEA + + + +L P+ Sbjct: 277 GRRIYPFNMYTFEENLAVYISKLSKAETDDLRVDINNLIDEAEVTKGI-RLSPM------ 329 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A + + IS+I+GGPGTGKTT + +L+ L + +AAPTG+AA R+T Sbjct: 330 QRKAVSACMEESISIITGGPGTGKTTIIYTILSILKSAGK----NVEIAAPTGRAAMRIT 385 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLL--GAQPGSQRLRHHAGNPLHLDVLVVDEA 271 E+ +A T+HRLL G + ++ NPL D L++DEA Sbjct: 386 ETSSF-----------------EAKTIHRLLEYGGTESGKGFARNSKNPLECDALIIDEA 428 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+D+ + L A+ R+I +GD DQL SV AG VL D+ + R Sbjct: 429 SMVDVILAYSLFKAIKPGTRIIVVGDSDQLPSVGAGNVLADLI--------KSEVINVIR 480 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 LT + +R S I Q A AIN K + DF Sbjct: 481 LT-----------------------EIFRQNEKSMIVQNAHAINH-RKFPICNTEDGDFF 516 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 +E+ + + I L + A Y D +Q ++Q+LC ++G G Sbjct: 517 FLERSENPAIINVIMNLCKNSAKRNGY-DPMQ-------------DFQVLCIQKKGECGT 562 Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYE-----GRPVMIARNDSAL------------GLF 494 LN ++ + KI + ++ G VM +N+ L G+F Sbjct: 563 ENLNSILQNMLNP--KIDDNSEINYFGSVFRIGDKVMHIKNNYDLKWHSNRTGERGRGIF 620 Query: 495 NGDIG-----------IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 NG+IG +A++ G ++ P+ K +QP+ +A+TVHKSQG Sbjct: 621 NGEIGNIVFVSKADDVLAVEYTGGRVARYSKPE--FKEIQPA--------YAITVHKSQG 670 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 +EF + + + T+ L+YTAVTRA+ ++ L Sbjct: 671 NEFPVVIMPVVGAAPMLATKNLLYTAVTRAKDKVVL 706 >UniRef50_C3RKU1 Exodeoxyribonuclease subunit V alpha n=4 Tax=Bacteria RepID=C3RKU1_9MOLU Length = 731 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 107/424 (25%), Positives = 183/424 (43%), Gaps = 80/424 (18%) Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 RI L APTG+AA RLTE G A T+HRLL S + Sbjct: 366 RIGLVAPTGRAAKRLTELTGIY-----------------ACTIHRLLKWDLHSNTFAMNK 408 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL LDVL++DE SM+D ++S+L +A +V+F+GD QL SV G +L D+ Sbjct: 409 SNPLDLDVLIIDEFSMVDCLLLSKLFEAGRGINKVLFIGDYHQLPSVAPGNILQDL---- 464 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 + AG T L + +R DSGI QLA I Sbjct: 465 -------------------MEAGVKT---------IELDEIFRQAKDSGIIQLAHHIIHN 496 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAF-- 435 + + +F+Q + DI ++ + + + + ++ +A I + + Sbjct: 497 EIENMD-LFEQ-YRDI---------NFFPCINYDVV---KNVKIIVKKA----IDEGYDT 538 Query: 436 NEYQLLCALREGPFGVAGLNERIEQF---MQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 N+ Q+L + +G G+ LN+ ++ + + ++ + G ++ +N Sbjct: 539 NDIQVLVPMYQGVAGIDALNDALQDVFNPIDEFNDSYQIGRKEYRVGDKILQLKNRPDDD 598 Query: 493 LFNGDIGIALDRGQGTRVWFAMP------DGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 +FNGDIG ++ + + DGN + + M++HKSQG+EF Sbjct: 599 VFNGDIGTLVEICRKDNFEYLQDTLIVDFDGNFVEYTSNTFNTITHAYCMSIHKSQGNEF 658 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALF 604 + + S ++ R L+YTA+TRA++ L + + +A + R++ L + F Sbjct: 659 KIVIMAVLSDYYIMLRRNLLYTAITRAKQSLFILGSSKAFMHGLANYQDSRRKTSLKSRF 718 Query: 605 SSRE 608 + E Sbjct: 719 KTIE 722 >UniRef50_O34481 Uncharacterized protein yrrC n=119 Tax=Bacillales RepID=YRRC_BACSU Length = 798 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 111/413 (26%), Positives = 174/413 (42%), Gaps = 77/413 (18%) Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTG+AA R++ES G LP A T+HRLLG G++ H Sbjct: 405 IVLAAPTGRAAKRMSESTG-----LP------------AVTIHRLLGWN-GAEGFTHTED 446 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 P+ +L++DEASM+D+ + + L A+PDH ++I +GD DQL SV G VL D+ Sbjct: 447 QPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQIIIVGDEDQLPSVGPGQVLRDLL---- 502 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 A + RLT YR S I +LA + G Sbjct: 503 ----ASQVIPTVRLTDI-----------------------YRQAEGSSIVELAHQMKNGL 535 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEY 438 T +D + ++ G I + E + L + D+ Sbjct: 536 LPNNLTAPTKD-----RSFIRCGGSQIKEVVEKVVANA----LKKGYTAKDI-------- 578 Query: 439 QLLCALREGPFGVAGLNERIEQFM---QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 Q+L + G G+ LN ++ + ++KR+ + + G ++ N +FN Sbjct: 579 QVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFN 638 Query: 496 GDIG------IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 GDIG A + + + DGN + + + ++HKSQGSEF Sbjct: 639 GDIGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIV 698 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGL 600 L + ++ R L+YTA+TRA++ L L +E L + T R++ L Sbjct: 699 VLPVVKGYYRMLRRNLLYTAITRAKKFLILCGEEEALEWGVKNNDATVRQTSL 751 >UniRef50_B0P921 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P921_9FIRM Length = 753 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 129/462 (27%), Positives = 204/462 (44%), Gaps = 95/462 (20%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q++A A+T + +++GGPGTGKTT ++ ++ L +M + ++ LAAPTG+AA R++ Sbjct: 342 QRMAIVTAVTSPLMILTGGPGTGKTTAISAIIRLLGKMGE----KVALAAPTGRAAKRMS 397 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ----PGSQRLRHHAGNPLHLDVLVVD 269 E G ++ T+HRLL G + + + NPL D +++D Sbjct: 398 ELTGA-----------------ESKTIHRLLEVDFADGSGLTKFKRNEKNPLPFDAVIID 440 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+D + L+ AL R+I +GD DQL SV AG +LGD+ A Sbjct: 441 ETSMMDTLLFESLLRALKFSCRLILVGDPDQLPSVGAGNILGDLIA-------------- 486 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 G H+P + L + +R + S I A A+ G+ + V D Sbjct: 487 ----GGHLP-------------VVHLTEIFRQAAKSLIVTNAHAVVAGEYPRLD-VRDND 528 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 F + L A DL R + Q++ R G Sbjct: 529 FFFLPDTLAAHACATAA-------------DLYARRLPKRYGFSPMWDIQVIAPTRVGAA 575 Query: 450 GVAGLNERIEQFMQ----QKRKIHRHPHSRWYEGRPVMIARND-----------SALGLF 494 G A LN ++ + K++ P + + EG VM RN+ +G+F Sbjct: 576 GTAELNRVLQNAVNPPSPNKKEYVSGPVT-FREGDKVMQIRNNYDLVWQKDGGEDGMGVF 634 Query: 495 NGDIGIA--LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 NGDIG+ ++R T + + + E E +A+TVHKSQG+E+D L Sbjct: 635 NGDIGVIDLINRPSAT-IVVRFDEDRLAEYSFDMANELELAYAITVHKSQGNEYDAVILP 693 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 L ++ + R L+YTA+TRA++ L IL +A A +T Sbjct: 694 LMEGKSRMYYRSLLYTAITRAKKLLI------ILGSASAVKT 729 >UniRef50_C4V2J7 Exodeoxyribonuclease V alpha subunit n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2J7_9FIRM Length = 723 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 111/425 (26%), Positives = 181/425 (42%), Gaps = 77/425 (18%) Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 ++ ++I + + I LAAPTG+AA RL+E+ G A+T+HR+ Sbjct: 363 VIRSMIDIMGEQGLEILLAAPTGRAAKRLSEATGAP-----------------AATVHRM 405 Query: 244 LGAQ---PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 L AQ G A L DV+++DE SM+D+ +M L+ A+ +IF+GD DQ Sbjct: 406 LEAQGREDGEMHFARDAECMLEADVIIIDEVSMMDIVLMQHLLSAVLPGTHIIFVGDADQ 465 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L ++ G+VL D+ + F R Q+ +R Sbjct: 466 LPAIGPGSVLKDLL--RSGVFPCVRLTQI-----------------------------FR 494 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 + I A AIN G + T + DF+ + + I + ++L G Sbjct: 495 QNNRGTIVLNAHAINTG---CMPTFTEDDFSFVPAVSAEEAAKQILSICQSLIATG---- 547 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 + + Q+L +R GV N +++ + + + ++ + + G Sbjct: 548 ------------HSVMDMQVLSPMRREACGVDAFNRTLQEALNPQTEDNKLI-AGFRSGD 594 Query: 481 PVMIARNDSALGLFNGDIG--IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 VM RND +FNGD+G + +D ++ D + + M+V Sbjct: 595 KVMQIRNDYTKNVFNGDVGRIVWIDT---EKLIVQYTDDVDVTYTRDEFVSLTLAYVMSV 651 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-RTERR 597 HKSQGSE+ L L ++ R L+YTAVTRA++R+ L D L A++ RT RR Sbjct: 652 HKSQGSEYSTVILPLVRAHHIMLQRNLLYTAVTRAKKRVILVGDRTALFTAVSNDRTRRR 711 Query: 598 SGLAA 602 L A Sbjct: 712 YTLLA 716 >UniRef50_C7IID4 Exonuclease V subunit alpha n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IID4_9CLOT Length = 819 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 126/512 (24%), Positives = 211/512 (41%), Gaps = 119/512 (23%) Query: 141 LDKLFPVSDEI------NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 +DKL +E+ + QK + + +++G G+GKTTTV ++ L ++ + Sbjct: 374 VDKLIAEFEELKGFELEDMQKESVRAVFETNMLILTGSAGSGKTTTVECMIYVLQRVFEN 433 Query: 195 -ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 + LAAPTGKAA RLTE G +A T+HRLL ++ Sbjct: 434 RQEMSFMLAAPTGKAAKRLTEITGF-----------------EAMTIHRLLQFSYENKGF 476 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + GN L D++V+DE+SM+ + + L A+ V+ +GD QL SV AG VL D+ Sbjct: 477 FYRQGNELPYDLIVIDESSMLSIDLAHALFTAISPGTTVVMIGDTQQLPSVGAGNVLDDM 536 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 + +P D ++ + R + G++ Sbjct: 537 ------------------IKSGVIPTVKLNVIKRQADGSGIISNANRIIN----GEMPEI 574 Query: 374 INRGDKTAVKTVFQQDFTDIEK----RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD 429 IN+ +DF IE+ R+++ ++ L + Y +D Sbjct: 575 INQ----------NKDFFVIEEDDKYRVVKKTQE---ALNRLMTAYNHTID--------- 612 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFM----QQKRKIHRHPHSRWYEGRPVMIA 485 + Q++C + G LN+ I++ + + K++I R +S + EG V+ Sbjct: 613 -------DIQIICPQKSSEIGTYELNKAIQEMVNPAAENKQEIKR-GNSVFREGDKVIHL 664 Query: 486 RND------------------SALGLFNGDIGIALDRGQGTRVWFAMPDGN--------- 518 N+ + G+FNGDIG ++ V D N Sbjct: 665 SNNYETPHYRREPDTGRYFAQESCGIFNGDIGRIIEISNIKEVEAEDEDANTPEKKVAVQ 724 Query: 519 ----IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV-TRELVYTAVTRA 573 I + L E + + +TVHK QGS+ + AA+IL R V+ R L YTAVTRA Sbjct: 725 YDDFIIIYHINELEEIDLAYCLTVHKMQGSQCE-AAIILCHMRNYVMLNRNLGYTAVTRA 783 Query: 574 RRRLSLYADERILSAAIATR--TERRSGLAAL 603 ++ + ++ + ++ ER S L L Sbjct: 784 KKMACIIGQKKAIKLMVSNVKINERNSMLCDL 815 >UniRef50_D1T3Y7 Putative ATP-dependent exoDNAse (Exonuclease V), alpha subunit n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1T3Y7_9BURK Length = 757 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 136/507 (26%), Positives = 214/507 (42%), Gaps = 106/507 (20%) Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 RT+A + + + V+E + D+ S E Q++A +A R+ VISGG G G Sbjct: 315 RTIAPANSRLLSRVRVEELIAEFESDEQISFSAE---QRIAVHLAAENRLCVISGGAGVG 371 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTT +L + ++ + AA G+AA R+ G R L Q+K PE Sbjct: 372 KTT----ILRCIYRVYREASILVIQAALAGRAAKRMESVTGLPARTLAAL--QRKVTPE- 424 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 +L H V+VVDEASM+D+ M RL LP H R++ +G Sbjct: 425 ---------------QLSEHC-------VIVVDEASMVDIITMYRLCSLLPPHVRLLLVG 462 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D QL V G VL + + SR+ H L+ Sbjct: 463 DALQLMPVGPGLVLHALTSN-------------SRIPQVH------------------LE 491 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKR-LLQSGEDYIAMLEEALAGY 415 RF + I + A ++ G + + + ++ L +G ++ A + Sbjct: 492 VPQRFAGE--IARAATSVRTGTWPEIPSDLDAPVVFLRRKPALATGR-----VDSAWSIA 544 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ--------QKRK 467 L L Q EP Q+LCA + G GV LNE + + + Sbjct: 545 QTVLSLFQL--EP-------KASQILCARKRGKEGVLALNEACQNVLTGSAPCLTIWNSE 595 Query: 468 IHRHPHSRWYEGRPVMIARNDSALGLFNGDIG-----------IALDRGQ--GTRV-WFA 513 + ++ + G PV+ RN + GL NG +G + DRG G + W Sbjct: 596 LDALCNTGFRLGDPVVCTRNLYSAGLQNGSLGTLCKIEPEPKPVIADRGDMLGNAIAWID 655 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 DG + V S L + +A+T+HK+QGS+++ +I+P R ++ R L+YTA+TRA Sbjct: 656 WDDGECRPVFESLLDHLDLAYALTIHKAQGSQWER--VIIPITRHRLLDRTLIYTALTRA 713 Query: 574 RRRLSLYADERILSAAIATRTERRSGL 600 +R++ L DE +A A + R+GL Sbjct: 714 QRQVILVGDEE--AARHAVESLPRAGL 738 >UniRef50_B2JBK4 Exodeoxyribonuclease V, alpha chain n=2 Tax=Nostocaceae RepID=B2JBK4_NOSP7 Length = 705 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 119/453 (26%), Positives = 197/453 (43%), Gaps = 91/453 (20%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q++A +A R+ +++GGPG GKT T +++ M I LAAPTG+AA RL+ Sbjct: 301 QRLAVEMAAYSRVMILTGGPGCGKTFTTQIIVSLWKAMGKS----IALAAPTGRAAQRLS 356 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 + + QL +A T+H LL P + NPL +V EASM Sbjct: 357 Q-----ITQL------------EAKTIHCLLEFDPKTMGFLRDNQNPLPHTAIVALEASM 399 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +DL + S L+ A+ ++++ +GD DQL SV G L D+ N+G Sbjct: 400 LDLFLASSLVKAIQYGSQLLLVGDIDQLPSVGPGQFLSDLI---NSG------------- 443 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD- 392 HVP + L K +R S I A INR ++ + ++ Sbjct: 444 --HVP-------------VVRLTKVFRQAQQSAIIIAAHQINRSQFPTIEPISDNPVSEC 488 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 + + + + E + DL+ P L + Q+LC + G G Sbjct: 489 LWHGGGHHPKHGVKAISEIIT------DLI-----PRLGYNLATDVQVLCPMSRGLLGTR 537 Query: 453 GLNERIEQFMQ----QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI--ALDRGQ 506 LN ++Q + K +I R + EG ++ ND +FNGD GI A+D Sbjct: 538 NLNTVLQQLINPPSPDKVEITRG-GNLLREGDRIIQLTNDYNHEVFNGDFGIIKAID--- 593 Query: 507 GTRVWFAMPDGNIKSVQPSR---------LPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 P+ +VQ + L + +W++T+H+SQGSE+ L + +Q Sbjct: 594 --------PEEMEVTVQYGKHTVVRTGADLNQIALSWSLTIHQSQGSEYPVVILPIYTQP 645 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 +++R+ YTA+T A++ + ++ +S A+ Sbjct: 646 YMMLSRKQFYTALTCAKQLAIVVGSKKAISKAL 678 >UniRef50_C5V224 AAA ATPase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V224_9PROT Length = 772 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 130/498 (26%), Positives = 207/498 (41%), Gaps = 120/498 (24%) Query: 132 VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 V EAL A F ++ E Q+ A A+ + ISGG GTGKTT + +L + Sbjct: 338 VAEALTAHESSLEFELTGE---QREAVISAVMAPVCCISGGAGTGKTTILNAILGVFNVI 394 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 A+G C A G+AA R+ ES G+ A T+ + + Sbjct: 395 AEGIPCY--QMAVAGRAAQRMAESTGRP-----------------AQTIAKFI-----VT 430 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 LR + +LV+DEASM+DL M +LI LP R++F+GD QL V G + Sbjct: 431 HLRDKKSDLPPNIILVIDEASMVDLLSMYKLIGILPSATRILFVGDASQLPPVGDGLIFH 490 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 + F + ++ S L+G H A ++R+S L K Sbjct: 491 ALSDTPFPFFKLTQVKRQSELSGIH------RFATAIRESELELPKR------------- 531 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL-LQARAEPDL 430 +K LL+S + I E+ + R ++L L+A ++ Sbjct: 532 ---------------------TQKSLLESDDCSI----ESNSSINRLVELWLEAGGIGNI 566 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK--IHRHPHSRWY----------- 477 + L +++G GV +N ++++ R +R W Sbjct: 567 V---------LSPIKKGELGVDNINAQLQRAAGLNRPALYYRDEFRGWISWITSTGAQLL 617 Query: 478 EGRPVMIARN--DSALGLFNGDIGIALDRGQGTRVWFAMP------------DGNIKSVQ 523 EG P+++ N D + NGD+GI + F MP +G V Sbjct: 618 EGDPILVVVNNYDEEADIRNGDLGIITEV-------FDMPKYENGALGVMEINGVAIFVT 670 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 L + + +A+T+HKSQGSE+ ++LPS+ + ++ + L+YTAVTR +RL + D Sbjct: 671 SDILVKLQLGYAVTIHKSQGSEWPTCFVMLPSEASHMIDQTLLYTAVTRPIKRLVMIGDN 730 Query: 584 RILSAAIATRTERRSGLA 601 ++ AI RR LA Sbjct: 731 CLIEQAI-----RRGSLA 743 >UniRef50_B7C7R4 Putative uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7R4_9FIRM Length = 351 Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 94/402 (23%), Positives = 170/402 (42%), Gaps = 77/402 (19%) Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 +I+L APTG+A+ RL + L D+ T+H LL + Sbjct: 9 KIQLCAPTGRASKRLAQ-LSNC----------------DSRTIHSLLQWNLEDNSFGKNE 51 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 +PL +D ++VDE SM+D + ++L+ ALP+ R++ +GD DQL SV G VL D+ + Sbjct: 52 DDPLDVDFIIVDEFSMVDTHLFAQLLKALPNRCRILLIGDEDQLESVGPGKVLEDLIK-S 110 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 N T L+K +R + SGI LA I Sbjct: 111 NVIDTVH------------------------------LKKIFRQSNGSGIVTLAKEIREE 140 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 T +D + +R + +AL Y + +DL + Sbjct: 141 -----TTCHYEDGVEFIERT-------TPKIMDALIDYVKDMDL--------------DS 174 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLF 494 Q+L + +G G+ +N +++ K + + + + E VM+ +N ++ Sbjct: 175 MQILAPMYKGVAGIDEINRQMQVLFNPKSPQKNQMKVGTTIFRENDKVMLLKNLPDDDVY 234 Query: 495 NGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 NGDIG ++ V N+ L + W ++VHKSQG+E+ I+ Sbjct: 235 NGDIGTIVEIDTKRNVISVDFTNNVVDFSTDFLYYLKHAWCISVHKSQGNEYQSVFCIVD 294 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 ++ + L+YTA++RA+++L + ++++ + + +R Sbjct: 295 VNAKNMLEKRLLYTAISRAKKQLYIIGNKQLFETQVKLKQKR 336 >UniRef50_B1ZHR2 Exodeoxyribonuclease V n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZHR2_METPB Length = 637 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 129/459 (28%), Positives = 190/459 (41%), Gaps = 96/459 (20%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A + L + ++ GG G GKTT L A+ A + L A G+AA R+ Sbjct: 253 QREAVRLGLQAALGLMVGGAGVGKTTA----LRAICGAAGSHGHVVHLVALAGRAAVRMG 308 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLG-AQPGSQRLRHHAGNPLHLDVLVVDEAS 272 E+ AST+ LG + G L P L +VVDEAS Sbjct: 309 EA-----------------TAHPASTIAAFLGRIESGEVVL-----GPQTL--VVVDEAS 344 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DLP RL+ +P+ +R++ +GD QL + G V ++ + Sbjct: 345 MVDLPTFYRLLRRMPEGSRLLLVGDDAQLPPIGFGLVFHELVDVPD-------------- 390 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG-----DKTAVKTVFQ 387 +P T L + +R + +GI +AAA+ G DK F Sbjct: 391 ----IPKVT-------------LVRVHRQAAATGIPLVAAAVRSGTLPVMDKELTGPGFG 433 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 F D G+ + + +A+A G + D + ++LC + G Sbjct: 434 VAFLDGSS----DGQATLDDVVDAVATCGGWRD----------------DLRILCPTKGG 473 Query: 448 PFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD-RGQ 506 P G +N + R R P + G PVM RND L L NG +G GQ Sbjct: 474 PVGTEAVNACFHDLL--TRGHDRMPGRGFAAGEPVMFLRNDYRLDLRNGSLGTVTGFDGQ 531 Query: 507 GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 V F DG + L + +A+TVHK+QGS F +++P T ++ R LV Sbjct: 532 VLEVDF---DGRRHELSGRNLDDTALAYAVTVHKAQGSAFRR--VVMPVTPTRLLDRSLV 586 Query: 567 YTAVTRARRRLSLYADERILSAAI--ATRTERR-SGLAA 602 YTA+TRAR + L D R + A+ AT RR +GL A Sbjct: 587 YTAITRAREQAVLVGDRRAFARAVQAATSANRRFTGLKA 625 >UniRef50_UPI0001C367B5 helicase, RecD/TraA family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C367B5 Length = 759 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 120/450 (26%), Positives = 188/450 (41%), Gaps = 85/450 (18%) Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAA 209 N Q A +S+I+G PG+GKT+ + A+I+M + I+L APTG+A+ Sbjct: 340 NMQAKGVQQACMYNLSIITGPPGSGKTSAIK----AIIEMFRILHPKGIIKLMAPTGRAS 395 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHR-LLGAQPGSQRLRHHAGNPLHLDVLVV 268 R+ ES G E+ASTLH + + R + L D+++V Sbjct: 396 RRMVESTGF----------------EEASTLHSGMCIVSEEDENYRKKEPDLLEADLVIV 439 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 DE S++D+ +MS+ L + +++ +GD DQL SV AG VL ++ + G Sbjct: 440 DEVSLVDMWLMSQFFKRLKRNTKIVLVGDVDQLPSVGAGNVLYEMI---HCGL------- 489 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 +P + +L + +R S I A IN+G + Sbjct: 490 --------IP-------------VTVLDEIFRQEKGSTIPHNAKLINQG---CTRLHGSD 525 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR-EG 447 DF +I + +A A + + R ++ + Q+L R EG Sbjct: 526 DFI------------FIPSVNQAKAA-----ETIVERYCQEIAENGIEQVQILSPFREEG 568 Query: 448 PFGVAGLN----ERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI--- 500 VA LN ER+ F + +IH S + G +M +N + NGD+G Sbjct: 569 AASVAHLNAVIRERVNPFCSTEDEIHTGSKS-FRVGDRIMQTKNTEHVS--NGDLGFIRY 625 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 D +G RV G L E ++A TVHK GSEF + + Sbjct: 626 VKDTPEGKRVGMDFGPGRELEYGFEDLSHVELSYATTVHKGMGSEFSIILFPVLEAHKIM 685 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAI 590 + R L+YTAVTRA+ ++ L + L AI Sbjct: 686 LYRNLIYTAVTRAKTKVMLVGQKSALLTAI 715 >UniRef50_Q9Z7F4 Exodeoxyribonuclease V, Alpha n=3 Tax=Chlamydophila pneumoniae RepID=Q9Z7F4_CHLPN Length = 493 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 114/438 (26%), Positives = 188/438 (42%), Gaps = 111/438 (25%) Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 S++SGGPGTGKT A+L+ +L++ + RI + +PTGKA + + + L Sbjct: 149 FSIVSGGPGTGKTFLAAQLILSLVKQQ--PKLRIAIVSPTGKATSHIRQIL--------- 197 Query: 226 TDEQKKRIPEDA---STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 K I +D T+H L Q + R R+++ +DVL+VDE SM+ ++ L Sbjct: 198 ---MKYNIFDDMVLMQTVHHFL--QEYAYR-RYNS-----IDVLLVDEGSMVTFDLLYSL 246 Query: 283 IDALPDHAR--------VIFLGDRDQLASVEAGA--VLGDICAYANAGFTAERARQLSRL 332 + L + + +I LGD +QL + G L D+ Y Sbjct: 247 VQTLQGYEKDKKLYTSSLIILGDTNQLPPIGIGVGNPLQDLIGY---------------- 290 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 ++ L+ S+R + QL ++ RG+ + Sbjct: 291 ---------------FHENTFFLKTSHR-AKTGVVDQLTQSVLRGEMISFSP-------- 326 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 L S I +L+ R++ L+ ++E L + L +R GP+GV Sbjct: 327 -----LPSISSAIEVLK------NRFVKSLR-QSEARLCV--------LTPMRHGPWGVL 366 Query: 453 GLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF 512 LN I Q R P R P+M+ GLFNGD G+ + Q ++ F Sbjct: 367 NLNTMIHQ-----RLARSDPDLRI----PIMVTSRYETWGLFNGDTGLLCLKTQ--KLHF 415 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 + + L ++ + M+VHKSQGSE+D +I+P + + V ++YTA+TR Sbjct: 416 PQHE----PIDSRALSQYVYNYVMSVHKSQGSEYDEVIVIIP-KGSEVFGVSILYTAITR 470 Query: 573 ARRRLSLYADERILSAAI 590 A+ R+S++ D L I Sbjct: 471 AKYRVSVWGDPETLHKII 488 >UniRef50_C7IFQ7 AAA ATPase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IFQ7_9CLOT Length = 1178 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 113/496 (22%), Positives = 214/496 (43%), Gaps = 94/496 (18%) Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 + I VI+G GTGKTT V ++ A ++ + GE +L APTGKAA RL + GK Sbjct: 590 FQKPICVITGEAGTGKTTIVNAIINA-VEKSTGEGTTFQLLAPTGKAAERLRLATGK--- 645 Query: 222 QLPLTDEQKKRIPEDASTLHRLL---GAQPGSQRLRHHAGNPLHL-DVLVVDEASMIDLP 277 +A+T+H L G + + G +++DE SM+D Sbjct: 646 --------------NAATIHSFLVQRGWMNDNFTFKREGGVADETKKTIIIDECSMLDTV 691 Query: 278 MMSRLIDALPDHA--RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 ++ L ++ + R+IF+GD +QL + G +I Y + G Sbjct: 692 ILGTLFKSINFNCVQRIIFVGDHNQLPPIGTGKPFAEIIDYL--------KKYYPDYIGI 743 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIE 394 P E + SL L Q G+++ G L G+ +K +F ++ ++++ Sbjct: 744 LTPNIRLIEEGGI--SLELAQIFTENGNENEEGILQKLQYGGEIDKDLKVIFWKNESELK 801 Query: 395 KRLL--------QSGED--------YIAMLEEALAGYGRYLDLLQ-----------ARAE 427 ++++ + GE+ + + E + + R D Q + Sbjct: 802 EKVVSEIISKVRKDGEETEETVRYTFDRLFENQKSKFDRNPDNFQIISPYRNEEYGTESV 861 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 L+ Q FN Y + G G ++I Q++ + + + ++ +R Sbjct: 862 NQLMQQTFNNYNY---EKHGKLGGVTYFDKIIQYINRPKSYPYYAYN--------FSSRQ 910 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHET--------------- 532 L ++NG+IG + ++W + P + Q ++ ET Sbjct: 911 VERLEVYNGEIGFMVPHA-ADKLW-SKPFFRLSKFQ-AKFKGKETFGIEFNSDNMVTENV 967 Query: 533 --TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 +A++VHK+QGS+FD+ ILP +++ ++++EL YT +TRA++ +L+ ++ I A + Sbjct: 968 ELAYAISVHKAQGSDFDNVYFILPKKKSRLLSKELFYTGITRAKKHTTLFIEDDI-GALL 1026 Query: 591 ATRTERRSGLAALFSS 606 + R + S ++ + SS Sbjct: 1027 SLRRKEASEVSKINSS 1042 >UniRef50_Q58914 Uncharacterized protein MJ1519 n=1 Tax=Methanocaldococcus jannaschii RepID=Y1519_METJA Length = 1175 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 117/508 (23%), Positives = 205/508 (40%), Gaps = 91/508 (17%) Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 ++ Q A L R+ +++G GTGKTT V K + L++ G +I + PTGK+A Sbjct: 566 LDMQTEAVVNLLKNRVGILTGPAGTGKTT-VIKTIMELMKEVLG-LNKIYILTPTGKSAM 623 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ---------RLRHHAGN-P 260 + E L A T+HR + + RL GN Sbjct: 624 VVNEKLNNLAT---------------AKTIHRYIAEEFKDYFEGDNYFILRLDKITGNDK 668 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDA--LPDHARVIFLGDRDQLASVEAGAVLGDICAY-- 316 +D L++DE+SM+D+ M RL+ L + +IF+GD +QL V AG DI Y Sbjct: 669 KEIDALIIDESSMVDIETMGRLLGTIKLDNLKYLIFVGDINQLPPVGAGKPFYDIYNYLE 728 Query: 317 ---------------ANAGFTA------------ERARQLSRLTGTHVPAGTGTEAASLR 349 A++ ER + L+ + G E ++ Sbjct: 729 KVNPQSICKLEIVLRADSKKIVELSKLFLDIDKEERIKILNEMFKNKETLG-DNEIYRIK 787 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML- 408 +++ ++K G + ++ +T +K +DF D D + +L Sbjct: 788 ENIGGIEKEIITIEVVKDGNIKKSLENAIETILKENNTEDFFD-----FAVFNDKLQILV 842 Query: 409 -EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK 467 + +G Y+ L + E I + L FG + +++ Q +K Sbjct: 843 PTKTKGEFGSYMINLFIKQESKFIPDKYKN----KMLENWFFGDGKVADKVIQIRNNYKK 898 Query: 468 -IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSR 526 ++ +W + G+FNG +G A + + + I + Sbjct: 899 WVYDTERRKWVKEH-----------GVFNGMMGFAYTFKKWNKYQKKYENKTIIRFYYPK 947 Query: 527 L------PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 + E E +A+T+HKSQGS F++ LI+P V++E++YTA+TRA++RL + Sbjct: 948 IEAYTDEKEMEHAYAITIHKSQGSGFENVILIIPKGLNKFVSKEMLYTAITRAKKRLYVI 1007 Query: 581 ADERI---LSAAIATRTERRSGLAALFS 605 +E + L I+ R++ L F+ Sbjct: 1008 VEEELKNFLETNISDLARRKTNLLENFN 1035 >UniRef50_C0QEU8 RecD1 n=2 Tax=Desulfobacterales RepID=C0QEU8_DESAH Length = 826 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 87/150 (58%), Gaps = 23/150 (15%) Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 SV++GGPG GKTTT L+ + M + LAAPTG+AA R+ E +G Sbjct: 352 FSVLTGGPGCGKTTTTRVLVELIRAMGRS----VLLAAPTGRAAQRMEELIG-------- 399 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 ++A T+HRLLG Q GS R + +PL D L+VDE SM+D+ + + L+ A Sbjct: 400 ---------QEAKTIHRLLGWQNGS--FRKNEKSPLDCDFLIVDECSMLDITLTASLLKA 448 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICA 315 +P +V+F+GD DQL SV AG VL DI A Sbjct: 449 VPAACQVVFIGDSDQLPSVGAGNVLKDIIA 478 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 21/184 (11%) Query: 436 NEYQLLCALREGPFGVAGLNERIEQF----------MQQKRKIHRHPHSRWYEGRPVMIA 485 +E Q+L + G G LN I+ ++ +I R G V+ Sbjct: 645 SEIQILTPMTRGTLGTINLNRVIQAAVNPLTHGTAQLKVGERIFR-------VGDRVIHR 697 Query: 486 RNDSALGLFNGDIG--IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 +N+ LG+FNGDIG +++D + T V PDG Q + E + +A+T+HKSQG Sbjct: 698 KNNYDLGVFNGDIGRIVSIDNVELTCVVSFFPDGREVIYQKEEVIELDLAYAVTIHKSQG 757 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLA 601 SEF+ + + +Q ++ R L+YT +TRAR + L+ A+ + +R++ L Sbjct: 758 SEFEIVIIPVMTQHYKMLFRNLIYTGLTRARTLALFVGTRKALAMAVMNQDTGQRQTALE 817 Query: 602 ALFS 605 L + Sbjct: 818 QLLA 821 >UniRef50_A4VZ41 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=73 Tax=Streptococcaceae RepID=A4VZ41_STRS2 Length = 855 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 132/474 (27%), Positives = 212/474 (44%), Gaps = 93/474 (19%) Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLA--ALIQMAD----GERCRIRLAAPT 205 N QK A A+T + +++GGPGTGKTT + ++A A++ D E C + LAAPT Sbjct: 360 NIQKEAIVQAITNPLFILTGGPGTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPT 419 Query: 206 GKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDV 265 G+A R+ E G LP ++T+HR LG G + + + L D Sbjct: 420 GRATRRMNELTG-----LP------------SATIHRHLGLVEGQEE--SYRDDYLDADF 460 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAER 325 ++VDE SM+D + ++L + +V+ +GD +QL SV G VL D+ + Sbjct: 461 IIVDEFSMVDTWLANQLFQNISSQTQVLIVGDAEQLPSVSPGQVLADLL----------K 510 Query: 326 ARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 +L +T L++ YR DS I LA+ I +G A+ + Sbjct: 511 IDKLPSIT---------------------LERIYRQSDDSTIVTLASQIRQG---ALPSD 546 Query: 386 FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR 445 F++ D + ++ + I L E + G A I A NE Q+L + Sbjct: 547 FREKKAD--RSYFEAQNEQIPALIERIVG-----------AAIKSGIPA-NEVQILAPMY 592 Query: 446 EGPFGVAGLNERIEQF---MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL 502 G G+ LN + +++ H + +G V+ ND+ +FNGD+G Sbjct: 593 RGAAGIDQLNTMTQALLNPLEEGELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYIT 652 Query: 503 D---------RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 D + + F DG+ + + + +AM++HKSQGSEF +IL Sbjct: 653 DLLPAKYTDSKQDEITINF---DGSEVTYPRNEWYKITLAYAMSIHKSQGSEF--QVVIL 707 Query: 554 PSQRTP--VVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAALF 604 P RT ++ R LVYTA+TR++ +L L + A+ T R++ L F Sbjct: 708 PITRTSHRMLQRNLVYTAITRSKSKLILLGEISAFDYAVKNAGTVRKTYLVPRF 761 >UniRef50_Q039P4 ATP-dependent DNA helicase, RecD/TraA family n=9 Tax=Lactobacillus RepID=Q039P4_LACC3 Length = 822 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 119/429 (27%), Positives = 184/429 (42%), Gaps = 89/429 (20%) Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 L Q E I LAAPTG+AA R++E+ QLP AST+HRLLG Sbjct: 383 LDQYTTDEPFPIMLAAPTGRAAKRISET-----TQLP------------ASTIHRLLGLG 425 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 +Q A N L +L++DE SM+D + L+ AL +++ +GD+DQL SV G Sbjct: 426 VDTQEF---APNELPNGLLIIDEMSMVDTYLFRTLLTALHPGMKIVLVGDKDQLPSVGPG 482 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 V D+ R+ L + TH+ +R +DS I Sbjct: 483 QVFADLL----------RSGVLPQTALTHI---------------------HRQDADSSI 511 Query: 368 GQLAAAINRGDKTAVKTVFQQDFT--DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 LA A+N G DFT +++ L + + E + ++Q Sbjct: 512 IPLAHAVNAGK-------LPDDFTKPQVDRSFLACAP---SQVPEVVG------QVVQRA 555 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR----KIHRHPHSRWYEGRP 481 A I + Q+L + G G+ LN ++ + KR K + + + G Sbjct: 556 AVKQFSIA---DIQVLAPMYRGTAGIDRLNPLLQNILNPKRSARTKAIQFGETEYRIGDK 612 Query: 482 VMIARNDSALGLFNGDI----GIALDRGQGTR-----VWFAMPDGNIKSVQPSRLPEHET 532 V+ ND +FNG+I GI L + ++ + F DGN + + S + Sbjct: 613 VLQLVNDPNQNVFNGEIGQIVGITLGKEAESKTDELTIDF---DGNEITCKRSDFNKITL 669 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA- 591 +A ++HK+QGSEF L L Q ++ R L+YTA+TRA+ L L + A++ Sbjct: 670 AYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKSFLILVGELAAFQEAVSE 729 Query: 592 TRTERRSGL 600 R +GL Sbjct: 730 VAVNRHTGL 738 >UniRef50_C0XKM5 Exodeoxyribonuclease V alpha subunit n=3 Tax=Lactobacillus RepID=C0XKM5_LACHI Length = 837 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 127/524 (24%), Positives = 220/524 (41%), Gaps = 94/524 (17%) Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIE------VDEALLAQT--LDKLFPVS-DEINWQ 154 GDR+YL+ ++ E +A N + + D+A+ Q ++ F ++ D+ Q Sbjct: 300 GDRIYLSYVYNAEVQIAEHLNRIIKNKDDSEDHFSDDAIKNQIRMVESKFDINYDDSQSQ 359 Query: 155 KVAAAVA-----LTRRISVISGGPGTGKTTTVAKL--LAALIQMADGERCRIRLAAPTGK 207 + AV LT G T A+L + I + I LAAPTG+ Sbjct: 360 AIIKAVKSPAFILTGGPGTGKTTIINGIVNTYARLHEYSLDINEYKDKPFPIVLAAPTGR 419 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 AA +++S G LP AST+HRLLG G + + + + +L+ Sbjct: 420 AAKHMSDSTG-----LP------------ASTIHRLLGLN-GQESADYTSPKDIEGSLLI 461 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DE SM+D + L+ A+P+H ++IF+GD+DQL SV G V D+ Sbjct: 462 IDEMSMVDTFLFRLLMRAVPNHMQIIFVGDQDQLPSVGPGQVFHDL-------------- 507 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 LT +PA L YR S I QLA I+ G + F Sbjct: 508 ----LTSKQLPA-------------IHLDNIYRQEKGSSIVQLAHDIHAG---KLSDNFD 547 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 Q+ +D + + E + + E +A + D + Q+L + G Sbjct: 548 QNQSD--RSFIACNETQLPSVIEQVARRAKDKDF------------GLMDVQVLAPMYRG 593 Query: 448 PFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-- 502 G+ LN ++ Q + + H+ + G V+ N+ +FNGD+GI + Sbjct: 594 TAGIDHLNNILQNVWQVNPTGKSVTIRDHT-YRIGDKVLQLVNNPEQNVFNGDLGIIVGM 652 Query: 503 ----DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 ++ T++ + + + + + + + ++HK+QGSEF L + Q + Sbjct: 653 EAPKNQAIPTKIMIDFDETEV-TYEKNEWIQFTLAYCTSIHKAQGSEFPMVILPIVRQYS 711 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAI-ATRTERRSGLA 601 ++ R L+YTAVTRA L + +++ + + R++ L Sbjct: 712 RMLQRNLLYTAVTRASDFLIMLGEKQAFEQCVRSISVNRKTSLV 755 >UniRef50_C5V7K0 AAA ATPase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7K0_9PROT Length = 762 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 125/461 (27%), Positives = 192/461 (41%), Gaps = 101/461 (21%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A A+ + ISGG GTGKTT + +L +A E ++A G+AA R+ Sbjct: 354 QREAVIGAVLAPVCGISGGAGTGKTTILRAVLGCYESLAS-ELPSYQVAV-AGRAAQRIA 411 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD--VLVVDEA 271 ES GK A T+ +L+ G G P D +L+VDE+ Sbjct: 412 ESTGKP-----------------AQTIAKLIAEHTGE-------GKPELPDYLLLIVDES 447 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+DL M RL+ LP R+IF+GD Q+ V G V + + + F ++ + Sbjct: 448 SMLDLLSMYRLVRLLPYAVRIIFVGDSMQILPVGKGLVFHALQSSSVPFFELKQVMRQDE 507 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR-GDKTAVKTVFQQDF 390 +G H A LR+S L AA++R D V D Sbjct: 508 QSGIH------RFATDLRNSFVKLPP--------------AAVSRLVDSADCSLVESNDP 547 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG 450 + + LQ+G G G + +LC +R GP G Sbjct: 548 DQLAELWLQAG------------GIGAGI--------------------VLCPVRSGPLG 575 Query: 451 VAGLNERIE--------QFMQQKRKIHRHPH-----SRWYEGRPVMIARN--DSALGLFN 495 V +N ++ Q + Q R+ P + +G PV++ +N D + N Sbjct: 576 VDNINVTLQRKVGLERAQLLYQDRERGCLPWITSDGMQLLKGDPVLVTQNNYDDDADVRN 635 Query: 496 GDIGIALDRGQ---GTRVW--FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 GD+GI D T + M DG V L + +A+T+HKSQGS++ Sbjct: 636 GDLGILEDVADVLTDTERFGVIRMGDGRKIDVNLDLLGKLSLGYAVTIHKSQGSQWPTCF 695 Query: 551 LILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 + LP + ++ L+YTAVTRA +R+ L+ + R++ IA Sbjct: 696 IALPRNASRMIDLSLLYTAVTRALKRVVLFGEPRLIEIGIA 736 >UniRef50_A5GUA1 Exodeoxyribonuclease V alpha chain n=1 Tax=Synechococcus sp. RCC307 RepID=A5GUA1_SYNR3 Length = 477 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 123/404 (30%), Positives = 180/404 (44%), Gaps = 73/404 (18%) Query: 191 MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGS 250 +AD L APTGKAAARL E AL LP + + STLHR L A P Sbjct: 126 LADERERHTLLLAPTGKAAARLRE----ALSPLPASMQ--------CSTLHRALEANPSG 173 Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 R+ P++ +V+VVDE SM+D +M L++ALP + R++ +GD QL + +VL Sbjct: 174 GFGRNQQ-RPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVL 232 Query: 311 GDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 + +QL + H P L L++S+RF + +G Sbjct: 233 EPL------------EQQLKQ----HRP-----------QLLLQLERSHRFNDSTALGGF 265 Query: 371 AAAINRGDKTA---VKTVFQQDFTDIEKRLLQSG-----EDYIAMLEEALAGYGRYLDLL 422 + G TA + + + +++ L+ G + I + L L Sbjct: 266 VQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGWPLALQQRIEQHRQRLEQQAHNTALS 325 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 A A + + +L R G GV+ LN R Q R P W G P+ Sbjct: 326 DAEA-----LACLEDLLVLSPRRSGRQGVSQLNRRWLPLTQ------REPW-HWPAGTPL 373 Query: 483 MIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEH-----ETTWAMT 537 ++ RND++LGL NGD G+ QG A +G P RLP E A+T Sbjct: 374 LVGRNDASLGLANGDRGLVRPGPQGQEAVIATAEG------PRRLPLELLPCPEPALALT 427 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 VHKSQGS+ ++LP+ + R L+YTA+TRA+ RL L + Sbjct: 428 VHKSQGSQAREVIVVLPAGSG--LDRRLLYTALTRAQERLDLLS 469 >UniRef50_A9VCH2 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9VCH2_MONBE Length = 902 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 122/461 (26%), Positives = 200/461 (43%), Gaps = 83/461 (18%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q A L++R++V++GGPG GKTT V + L A +Q+ LT Sbjct: 493 QIAACNQLLSQRMAVLTGGPGVGKTT-VLRALVATLQL--------------NHKNVFLT 537 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL------RHHAGNPLHLDVLV 267 +A+R + E++ I DA T+H L S+RL ++ + V Sbjct: 538 TLSARAVRMI----EERTMI--DAHTIHSL---NTLSERLIFRITTEQYSDRIADMSCFV 588 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 VDEASM+ L+ LP +A + +GD DQL +++ + G + N Sbjct: 589 VDEASMLSFECFEILLRNLPPNASLYLIGDPDQLPPIDSPGLFGHLINRHN--------- 639 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA--AAINRGDKTAVKTV 385 +P L + YRF I +LA A+ N+ D + Sbjct: 640 ---------IPT-------------VRLSQQYRFSEAGSISKLATAASANQRDLPVLVKS 677 Query: 386 FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE--PDLIIQAFNEYQLLCA 443 + F+++ D + M A + + L + E PDL +Q + Q+L + Sbjct: 678 MPRSFSEL------GDSDCLIMPATASDLEPKLIFLFEKLREQFPDLDLQ--RDVQILTS 729 Query: 444 LRE-GPFGVAGLNERIEQFM--QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG- 499 RE G V+ +N ++ + QQKR+I R + G VM N+ FNG+IG Sbjct: 730 FREAGSASVSRINGILQDYFAQQQKRRIDRR--FNYAFGDRVMQVVNNRKHQAFNGNIGR 787 Query: 500 IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL---PSQ 556 ++ V F K E E +A T+HK+QGS+F +++ P++ Sbjct: 788 VSRLDNYSVTVQFEGTRRERKYSWEEARNELELCYATTIHKAQGSQFPVVIVMMGVDPTE 847 Query: 557 RT-PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 V T+ VYTA+TRA+R L L+ ++R+ S A++ + +R Sbjct: 848 HALSVATKPAVYTAITRAQRFLVLFGNDRVASDALSGKQDR 888 >UniRef50_Q2J9N4 Exodeoxyribonuclease V n=5 Tax=Frankia RepID=Q2J9N4_FRASC Length = 816 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 120/416 (28%), Positives = 182/416 (43%), Gaps = 73/416 (17%) Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 +SV++GGPGTGK+ TVA A++++A + LAAPTG+AA RL E G Sbjct: 392 VSVLTGGPGTGKSRTVA----AVVRLAWAAEAVVALAAPTGRAAKRLEELCGAP------ 441 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 ASTLHRLL AQ NP+ D++VVDEASM+D + + L+DA Sbjct: 442 -----------ASTLHRLLQAQGRGSGFARGEHNPIDADLVVVDEASMLDAELAAALLDA 490 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 D ++F+GD QL S+ G +L D+ L VP Sbjct: 491 CADGTHLMFVGDPAQLPSIGPGQILADL------------------LESGEVP------- 525 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 + L++ YR I +AAA+ E ++ SG Sbjct: 526 ------VTELRRLYRQADGGAIATMAAAVR-------GGELPPPGPGREVVVVPSGSSGE 572 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 A R + L+ + P + + Q++ + GP G LN ++ + Sbjct: 573 AAH--------RTVQLVT-NSIPRALGIPVADIQVVTPVHAGPAGTTALNTALKGTLNPG 623 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPS 525 S + G V+ N +G NG+IG + G+ + A P G + V Sbjct: 624 GGA----VSGFDIGDRVVATANHIDVGFANGEIGTVVALGERGALRVAFP-GGVVEVPAG 678 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 L + WA+TVH++QGSE+ + P + ++TR L+YTA+TRA+ LS+ A Sbjct: 679 VLGDLRHGWAVTVHRAQGSEWPAVVAVFPPEAGRMLTRPLIYTALTRAQAHLSIVA 734 >UniRef50_Q6MSW8 EXODEOXYRIBONUCLEASE V ALPHA CHAIN n=2 Tax=Mycoplasma RepID=Q6MSW8_MYCMS Length = 318 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 59/339 (17%) Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS-- 330 M+D + S+ I A+ +++F+GD +QL SVE G V DI ++++++ Sbjct: 1 MVDNNLFSQFISAIGQAKKIVFVGDINQLPSVEIGNVFEDII----------KSKKITTV 50 Query: 331 RLTGTHVPAGTGTE---AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 L TH A A ++D+ L+K Y N+ + KT Q Sbjct: 51 ELKSTHRQANNSKIVELAYMIKDNNFDLKKLYE--------------NQTTENQSKTDLQ 96 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 F D +++ L+ E + Y LD EP I Q++ ++ Sbjct: 97 TIFVDNQEQCLK----------EIINNYN--LDNKTGFHEPYKI-------QIISPFKDD 137 Query: 448 PFGVAGLNERIEQFMQQKRKIHRHP-------HSRWYEGRPVMIARNDSALGLFNGDIGI 500 GV +N+ I+ ++ K+ + +S +Y+ VM RN++ L NGDIG+ Sbjct: 138 ILGVKDINKFIQNNRFKQEKLDENTELCIQINNSEYYQKDKVMYLRNENDLS--NGDIGV 195 Query: 501 ALD-RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL-PSQRT 558 + D ++ + L +A TVHK+QGSEF+ L+L P + + Sbjct: 196 IQKIHKDSNELKINFNDKIFSTINNASLKNLTLCYACTVHKTQGSEFEKVILVLDPKRSS 255 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 + ++L+YTA+TRAR++L + A++ I E R Sbjct: 256 SFIDKKLIYTAITRARKQLVIIANKNSFINGINKNPETR 294 >UniRef50_B1YJE6 Helicase, RecD/TraA family n=2 Tax=Exiguobacterium RepID=B1YJE6_EXIS2 Length = 741 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 116/430 (26%), Positives = 189/430 (43%), Gaps = 102/430 (23%) Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG 249 Q+ GE L APTG+AA RL+E+ TD +P A T+HRLL Sbjct: 378 QVKSGEVYPYVLVAPTGRAAKRLSEA----------TD-----VP--AMTIHRLLKYDGT 420 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 + +L P+ VL++DE+SMID+ ++S L+ A+P+ +++F+GDRDQL SV G V Sbjct: 421 NFQLDED--QPIAGKVLIIDESSMIDIYLLSSLLRAVPNGMKILFVGDRDQLPSVGPGQV 478 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 L D+ + +P + L +R DS I + Sbjct: 479 LADL------------------MDTDGIP-------------VVRLNVVHRQAEDSSILR 507 Query: 370 LAAAINRGDKTA--VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARA 426 LA + +A + + + F + + +S A E+ALA GY ++ Sbjct: 508 LAHDLKNRVTSADLLAPLSDRRFYSLAPQ--ESLRGIAAFAEKALAKGYSKF-------- 557 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ----QKRKIHRHPHSRWY-EGRP 481 + Q+L G G+ LN +++ +KR++ + +R Y G Sbjct: 558 ----------DVQILAPTYRGQVGIDELNIVLQKVYNPEAPKKREVKQ--GTRIYRSGDK 605 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMP-----DGNIKSVQPSRLPEHETTW-- 534 ++ N++ ++NGDI G+ ++FA D I + + + + W Sbjct: 606 ILQLVNNAEENVYNGDI------GEIVNIFFAKENVDKVDKIIARFDQTEVEYNRSDWDQ 659 Query: 535 -----AMTVHKSQGSEFDHAALILPSQRTPVV--TRELVYTAVTRARRRLSLYADERILS 587 A+T+HK+QGSEF +++P T +R L+YTAVTRA+ L L+ D R Sbjct: 660 FTHAYAITIHKAQGSEF--PIVLMPVFFTGAFKHSRNLIYTAVTRAKASLLLFGDPRAFH 717 Query: 588 AAIATRTERR 597 A RR Sbjct: 718 KASQEEEPRR 727 >UniRef50_B1BD28 Exodeoxyribonuclease V, alpha subunit n=3 Tax=root RepID=B1BD28_CLOBO Length = 747 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 104/456 (22%), Positives = 196/456 (42%), Gaps = 96/456 (21%) Query: 142 DKLFPVSDEINWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR 200 DK ++DE ++ A L + +S+++ G+GK+ +V ++ M + Sbjct: 335 DKGIELTDE----QIGALDYLCKYNVSILTAPAGSGKSQSVK----MMVNMLEDNNKSYL 386 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-LRHHAGN 259 L PTGKA L+E + +A T+HR L P ++ ++ N Sbjct: 387 LMTPTGKAGDVLSEYTNR-----------------NAGTIHRQLKYNPQNENPWFYNEKN 429 Query: 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDH-ARVIFLGDRDQLASVEAGAVLGDICAYAN 318 L +D ++VDE M+D+ +M+ L+D + H +++ + D QL+SV G V D+ Sbjct: 430 KLDVDTVIVDEFGMVDIYLMNHLLDGIDIHKTKLVLVFDSYQLSSVGCGNVAHDL----- 484 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 L VP +L K +R+ ++ G+ Q+A I + Sbjct: 485 -------------LMSKVVPT-------------TILTKIFRY-NEGGLMQIATKIRNSE 517 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGEDYI-------AMLEEALAGYGRYLDLLQARAEPDLI 431 K +F + ++ S +DYI M++E + Y + LL+ + Sbjct: 518 K-----FLPSNFKGV--KIFGSEKDYIYIEKPQTKMIDEIIKIYSK---LLKDGYK---- 563 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ--KRKIHRHPHSRWYEGRPVM-IARND 488 F + +L A +G +G +N+ I++ +Q + + + + +Y+G V+ I N Sbjct: 564 ---FEDVMVLSAYNKGDYGTREINKNIQKLVQNNTENQYLQRGDTNFYKGDKVIQITNNY 620 Query: 489 SALG-------LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 A+ ++NG+ G+ ++ V NI + L + E + ++ HKS Sbjct: 621 QAMTIEGGEVEIYNGNTGVVIEVNFNEMV-VQFKHHNIIYAKDD-LEQLELGYCVSTHKS 678 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 QG + LI P T ++ L+Y VTR ++R+ Sbjct: 679 QGDNAKNIILITPRSHTYMLNSNLLYVGVTRGKKRV 714 >UniRef50_Q2HYH7 Helicase n=4 Tax=Bacteria RepID=Q2HYH7_BACTT Length = 767 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 109/451 (24%), Positives = 195/451 (43%), Gaps = 113/451 (25%) Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 + RI+++ G GTGKT T+ LL L + + + TGKA++R+ E R Sbjct: 396 IDNRITLLLGRAGTGKTYTLVNLLNRL----KPDPNKTIVCTYTGKASSRIRE----LFR 447 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 + L D + + T+H+ + S+ R+ N + L++DE SMI ++S+ Sbjct: 448 EYDLQDYK-------SLTIHKTCASNFNSKFFRNEY-NIIDCAYLIIDEVSMIPREILSK 499 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L+ A+P H ++IF GD QL V +++ ++ Sbjct: 500 LLQAVPSHVKIIFAGDDAQLPPVNDTSIIPEL---------------------------- 531 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 EA +++ L Q +R D+ +GQ + G K+ +F +D ++ +L+ G Sbjct: 532 --EALEFVNTVRLTQ-VFR-SEDAVLGQAYNVL--GRKSIDYNLFGEDMKELVLKLISDG 585 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 + + + ++++ ++ D I + F++Y+ LN+R Sbjct: 586 YQILTNTRKL----AKDINMIVQESKND-ITKCFDDYKY------------NLNDR---- 624 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTR-------VW 511 VMI N SA + NGD G +D RG R V+ Sbjct: 625 --------------------VMIIANSSARNVSNGDTGKIIDFDERGVCVRLDLEDREVF 664 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 + D + + P+ +A TVHKSQGSE+++ A+ + SQ + T L+YT +T Sbjct: 665 YKYEDT--EEIVPA--------YAFTVHKSQGSEYENVAVFVDSQ-PKLNTNNLLYTGIT 713 Query: 572 RARRRLSLYA-DERILSAAIATRTERRSGLA 601 RA++ + +Y +E +L+ I T E S + Sbjct: 714 RAKKDIKVYVPNEMVLTTMINTVPEPVSNVT 744 >UniRef50_UPI0001C31D3E helicase, RecD/TraA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D3E Length = 741 Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 117/439 (26%), Positives = 183/439 (41%), Gaps = 99/439 (22%) Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 A R+SV++GGPGTGKT ++ +++ Q+A +R R L APTG+AA R+TE+ G Sbjct: 338 AFVHRLSVVTGGPGTGKTASI-RMIG---QIARDQRARTMLVAPTGRAALRMTEATGL-- 391 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 DAST+H LG PG + H PL D+++VDE SM +L ++ Sbjct: 392 ---------------DASTVHSALGWIPGEGPV-HDEDTPLRCDLVIVDETSMANLELLV 435 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 L+ A+ V+ +GD DQLA V AG ++ Sbjct: 436 TLLRAIGPGTHVVLVGDADQLAPVGAGKPFAELV-------------------------- 469 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV--FQQDFTDIEKRLL 398 AS R LQ +R + S I Q A AI G+ + + D I + Sbjct: 470 -----ASGRVPTARLQHIFRQAAGSMIVQGAHAIRVGNPPSFVRAEEMRHDLFFIAR--- 521 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 D +A EE + L+ R + + Q+ + G G+ LN + Sbjct: 522 ---PDPVAAREE-------IVSLVSERLPQHYGVDPNADIQVFAPIYRGELGIDALNRSL 571 Query: 459 EQFMQQK-RKIHRHPHSRWYEGRPVM-IARNDSALGLFNGDIGIALDRGQGTRVWFAMPD 516 + R+I + R G +M + RN LG+ NG + LD G + D Sbjct: 572 RAALNPAGREIG---NGRLRVGDKLMLVGRNLHELGVMNGTLLRLLDEVGGG----SSED 624 Query: 517 GNIKSVQPSR----------------LPEHET-----TWAMTVHKSQGSEFDHAALIL-P 554 + + + +R +P E +A +VH+ QG E A ++ P Sbjct: 625 EDARDARGAREAGGVLVGVDGGAVVQIPATEVGQLQLAYACSVHRGQGIELPIAIVVAHP 684 Query: 555 SQRTPVVTRELVYTAVTRA 573 + + RE++YTA+TR+ Sbjct: 685 AAGGRFLRREMLYTAITRS 703 >UniRef50_A1U312 AAA ATPase n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1U312_MARAV Length = 747 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 124/471 (26%), Positives = 195/471 (41%), Gaps = 108/471 (22%) Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 F +S+E Q+ A A++ + ISGG GTGKTT + +++ +ADG C A Sbjct: 333 FTLSEE---QQQAVIGAVSAPVVGISGGAGTGKTTILQAIISVYQALADGIACLP--VAL 387 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 +G+AA R+ +S G +P A T+ +L+ G G PL D Sbjct: 388 SGRAAQRMAQSTG-----MP------------AQTIAKLIADHLGE-------GKPLLQD 423 Query: 265 --VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 ++++DEASM+DL M RL+ LP+ R IFLGD CA Sbjct: 424 HLLIIIDEASMVDLLSMYRLVRILPEATRFIFLGD----------------CA------- 460 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDS---LCLLQKSYRFGSDSGIGQLAAAINRGDK 379 QLS P G G ++ DS L + R S + + A A+ +G+ Sbjct: 461 -----QLS-------PVGGGLVFHAMYDSPIPFFELSQVRRQSVQSPVHRFAMAVRKGEV 508 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 + + + +L D + EA AG A ++ Sbjct: 509 LIPEMALKTLPESPDCCVLPPSLDRLTHFWEA-AG-------------------ALSDRI 548 Query: 440 LLCALREGPFGVAGLNERIEQFMQQKRK-IHR-HPHSRWYE-----------GRPVMIAR 486 +L R G +GV LN ++ + +R +H P W G PV++ R Sbjct: 549 ILSPRRSGDWGVTSLNTHFQKILGSERDDLHYLDPVKGWIPWITRFKQRLKLGDPVLVTR 608 Query: 487 N--DSALGLFNGDIGIALDRGQGTRV--W--FAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 N D L + NGD+GI + Q W +G K + L + +A+++HK Sbjct: 609 NIYDDELDVRNGDLGIITEVFQSVSAEGWSGVVYINGERKGINQELLEVLDLGYAISIHK 668 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +QGS++ ++ S+ ++ +VYTA TR RL L D L A++ Sbjct: 669 AQGSQWHTVFSVVTSEARRMLDASMVYTAATRPTDRLILVTDAHSLRGAVS 719 >UniRef50_C9B1G0 Helicase RecD/TraA n=4 Tax=Enterococcus RepID=C9B1G0_ENTCA Length = 884 Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 110/398 (27%), Positives = 171/398 (42%), Gaps = 77/398 (19%) Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 E I LAAPTG+AA R+ E+ G LP + T+HRLLG G ++ Sbjct: 389 ETFPILLAAPTGRAAKRMNETTG-----LP------------SGTIHRLLGLN-GREKAP 430 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + L +L+VDE SM+D + + L ++P + +VIF+GD+DQL SV G VL D+ Sbjct: 431 SISPKELEGGLLIVDEMSMVDTWLANTLFKSIPTNMQVIFVGDKDQLPSVGPGQVLHDLL 490 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 A +P TE YR G S I LA AI Sbjct: 491 AI------------------DAIPKQELTEI-------------YRQGDGSSIIPLAHAI 519 Query: 375 NRGDKTAVKTVFQQDFTDIEK-RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 G A DFT +K R + + Y +E +A +++ + Q Sbjct: 520 KNGQLPA-------DFTQNQKDRSFFACDAY--KIEPLIA------QIVKRAKDKGYTPQ 564 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSA 490 + Q+L + G G+ LN+ +++ +K + + G V+ N Sbjct: 565 ---DIQVLAPMYRGAAGIDALNKMMQEIFNPNDGTKKEVTFNDTVYRIGDKVLQLVNSPE 621 Query: 491 LGLFNGD----IGIALDRGQGTRV--WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 +FNGD +GI L + +V D N + + + + ++ ++HKSQGS Sbjct: 622 DNVFNGDMGQIVGITLAKQSEDKVDELVIQFDANEVTYKRNEWNKITLSYCCSIHKSQGS 681 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 EF L + Q ++ R L+YTAVTR++ L L + Sbjct: 682 EFQMVILPMVHQYQRMLQRNLLYTAVTRSKEMLILLGE 719 >UniRef50_Q4A5E7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5E7_MYCS5 Length = 740 Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/444 (22%), Positives = 179/444 (40%), Gaps = 87/444 (19%) Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A L I++ISG PGTGK+ + + L Q + + APTGKA+ ++ Sbjct: 346 QKSAYESFLKNNITIISGAPGTGKSHIIKHIHNTLKQNKYKNQKEYAILAPTGKASLSVS 405 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E +I ST+H L +P S+ + L++DE SM Sbjct: 406 E-----------------KINAKVSTIHSFLQIEPSSEHTIKVKQINTEVKFLIIDEFSM 448 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ++ + + LI A P+ +++ +GD DQL ++ G +L DI S+L Sbjct: 449 VNTYIFNLLIRACPNLIKLVLVGDVDQLPAIGPGNLLSDIVE--------------SKLF 494 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 ++ L K +R SDS N + ++KT +F D Sbjct: 495 -----------------NVFYLDKYFR--SDS-----IEIFNHFN--SIKTNSPPNFKD- 527 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ-----AFNEYQLLCALREGP 448 + Y +YLD + DL + + LL ++ G Sbjct: 528 -----------------GIINYIKYLDSKYLSSVVDLFCEIAKESGLDNLMLLSPMKVGD 570 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPH--SRWYEGRPVMIARNDSALGLFNGDIGIALD--- 503 G+ +N++I+ + ++ +++ V+ N ++NGDIG Sbjct: 571 KGLDAINKKIQDLINPDSELVYSTKFGNKFKINDRVIQQENRLDDDVYNGDIGFIRKKIG 630 Query: 504 -RGQGTRVWFAMPDGN-IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 + Q ++ + IK L + + + +TVHK QGSE D+ ++ Sbjct: 631 TKTQDIKILVEFKNNKLIKYPLNEFLSQIKLAYGITVHKFQGSEIDNVIFAFADTHKRML 690 Query: 562 TRELVYTAVTRARRRLSLYADERI 585 ++L+YT ++RA++++ + + +I Sbjct: 691 YKKLIYTGLSRAKKQIWIVTNNKI 714 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P04993 Exodeoxyribonuclease V alpha chain n=123 Tax=Ent... 883 0.0 UniRef50_A7FFE8 Exodeoxyribonuclease V, alpha subunit n=30 Tax=E... 630 e-179 UniRef50_C4K847 Exonuclease V (RecBCD complex), alpha chain n=18... 606 e-172 UniRef50_Q2LTC7 Exodeoxyribonuclease V alpha chain n=1 Tax=Syntr... 597 e-169 UniRef50_D0ICR8 Exodeoxyribonuclease V alpha chain n=1 Tax=Grimo... 585 e-165 UniRef50_B9M4M2 Exodeoxyribonuclease V, alpha subunit n=8 Tax=De... 578 e-163 UniRef50_C4L7B4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=To... 574 e-162 UniRef50_Q2BKD7 Exodeoxyribonuclease V alpha chain n=1 Tax=Neptu... 556 e-156 UniRef50_A6W0A8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ma... 553 e-156 UniRef50_Q1QYD2 DNA helicase/exodeoxyribonuclease V, alpha subun... 550 e-155 UniRef50_B8FB95 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 546 e-154 UniRef50_A1S6V1 Exodeoxyribonuclease V n=1 Tax=Shewanella amazon... 546 e-153 UniRef50_A4VRQ4 Exodeoxyribonuclease V alpha chain n=2 Tax=Prote... 544 e-153 UniRef50_A0KQ57 Exodeoxyribonuclease V, alpha subunit n=10 Tax=G... 540 e-152 UniRef50_A8ZX10 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 536 e-151 UniRef50_Q1LST7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ba... 535 e-150 UniRef50_C0QI06 RecD2 n=2 Tax=Desulfobacterium autotrophicum HRM... 534 e-150 UniRef50_B5EPU7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Ac... 534 e-150 UniRef50_A1TWJ9 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Ma... 528 e-148 UniRef50_Q5QUQ9 ATP-dependent exoDNAse (Exonuclease V), alpha su... 524 e-147 UniRef50_A3YGD9 Exodeoxyribonuclease V alpha chain n=1 Tax=Marin... 523 e-147 UniRef50_A4B916 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Re... 523 e-147 UniRef50_B3ECZ3 Exodeoxyribonuclease V, alpha subunit n=7 Tax=Ch... 519 e-145 UniRef50_Q02HF8 Exodeoxyribonuclease V alpha chain n=27 Tax=Bact... 519 e-145 UniRef50_Q2SQD7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ha... 518 e-145 UniRef50_C0N790 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Me... 516 e-145 UniRef50_A4JS83 DNA helicase/exodeoxyribonuclease V, alpha subun... 516 e-145 UniRef50_C1D6T5 Exonuclease V alpha subunit RecD n=1 Tax=Laribac... 516 e-144 UniRef50_Q0VNI0 Exodeoxyribonuclease V alpha chain n=1 Tax=Alcan... 515 e-144 UniRef50_A9L0I2 Exodeoxyribonuclease V, alpha subunit n=12 Tax=S... 515 e-144 UniRef50_A8FUM3 Exodeoxyribonuclease V n=7 Tax=Shewanella RepID=... 510 e-143 UniRef50_A7K3N3 Exodeoxyribonuclease V alpha chain n=60 Tax=Gamm... 509 e-142 UniRef50_C5CL22 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Be... 507 e-142 UniRef50_Q1N2Q9 Exodeoxyribonuclease V alpha chain n=1 Tax=Berma... 504 e-141 UniRef50_Q7VRF0 Exonuclease V, alpha chain n=2 Tax=Candidatus Bl... 503 e-141 UniRef50_A1SUW2 DNA helicase/exodeoxyribonuclease V, alpha subun... 499 e-140 UniRef50_B5JRL2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=ga... 498 e-139 UniRef50_D0YW55 Exodeoxyribonuclease V alpha chain n=3 Tax=Gamma... 498 e-139 UniRef50_D0IXL7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Co... 498 e-139 UniRef50_A3MYX5 Exodeoxyribonuclease V alpha chain n=11 Tax=Past... 496 e-139 UniRef50_Q3IJ15 Exonuclease V, alpha chain with recC and recD: 5... 494 e-138 UniRef50_P45158 Exodeoxyribonuclease V alpha chain n=19 Tax=Past... 491 e-137 UniRef50_B1XZ26 Exodeoxyribonuclease V, alpha subunit n=4 Tax=ce... 489 e-136 UniRef50_Q1NL94 Exodeoxyribonuclease V, alpha subunit n=3 Tax=De... 489 e-136 UniRef50_Q3B471 DNA helicase/exodeoxyribonuclease V, alpha subun... 488 e-136 UniRef50_C3X2X3 DNA helicase n=2 Tax=Oxalobacter formigenes RepI... 487 e-136 UniRef50_C7LVF6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 486 e-135 UniRef50_Q6MDD6 Putative exodeoxyribonuclease V n=1 Tax=Candidat... 486 e-135 UniRef50_A3WKH6 ATP-dependent exoDNAse (Exonuclease V), alpha su... 482 e-134 UniRef50_Q15V09 DNA helicase/exodeoxyribonuclease V, alpha subun... 481 e-134 UniRef50_Q0AAH8 DNA helicase/exodeoxyribonuclease V, alpha subun... 480 e-134 UniRef50_B4X4Z2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 477 e-133 UniRef50_C1SHH8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 476 e-132 UniRef50_A4SEL8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 473 e-132 UniRef50_C6NU54 Exodeoxyribonuclease V alpha chain n=1 Tax=Acidi... 472 e-131 UniRef50_Q89AB2 Exodeoxyribonuclease V alpha chain n=1 Tax=Buchn... 471 e-131 UniRef50_D1R7Z3 Putative uncharacterized protein n=1 Tax=Parachl... 469 e-130 UniRef50_D1T987 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Bu... 464 e-129 UniRef50_A6DNF1 Exonuclease V (RecBCD complex), alpha chain n=1 ... 459 e-127 UniRef50_C5SAK6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 456 e-127 UniRef50_D1N1Q4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Vi... 456 e-127 UniRef50_C7RK95 Helicase, RecD/TraA family n=1 Tax=Candidatus Ac... 456 e-126 UniRef50_A8ZLV4 Helicase, RecD/TraA family n=18 Tax=Cyanobacteri... 454 e-126 UniRef50_C1AXR1 Exodeoxyribonuclease V alpha chain n=5 Tax=Nocar... 454 e-126 UniRef50_B2JKV2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Bu... 453 e-125 UniRef50_Q480P0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Co... 449 e-124 UniRef50_B0UUC7 Exodeoxyribonuclease V, alpha subunit n=9 Tax=ce... 449 e-124 UniRef50_Q3B2W0 Helicase RecD/TraA n=19 Tax=Bacteria RepID=Q3B2W... 447 e-124 UniRef50_Q7NQR4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 446 e-123 UniRef50_D0KVH2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ha... 441 e-122 UniRef50_B7KWK3 Helicase, RecD/TraA family n=16 Tax=Bacteria Rep... 440 e-122 UniRef50_D1A5Y8 Helicase, RecD/TraA family n=15 Tax=Bacteria Rep... 436 e-120 UniRef50_D2B1Q1 Exodeoxyribonuclease V n=9 Tax=Actinomycetales R... 434 e-120 UniRef50_C7PDT2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 434 e-120 UniRef50_D2S7J1 Helicase, RecD/TraA family n=15 Tax=Actinomyceta... 431 e-119 UniRef50_C1ACJ0 Exodeoxyribonuclease V alpha subunit n=1 Tax=Gem... 430 e-119 UniRef50_D1NBM8 Helicase, RecD/TraA family n=1 Tax=Victivallis v... 429 e-118 UniRef50_UPI00016C4690 helicase, RecD/TraA family protein n=1 Ta... 428 e-118 UniRef50_Q140W3 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Bu... 428 e-118 UniRef50_B3EIT2 Helicase, RecD/TraA family n=13 Tax=Bacteria Rep... 427 e-118 UniRef50_A4XG10 ATP-dependent DNA helicase, RecD/TraA family n=2... 426 e-117 UniRef50_B0B9E0 Exodeoxyribonuclease V alpha chain n=15 Tax=Chla... 425 e-117 UniRef50_B1I2W6 Helicase, RecD/TraA family n=1 Tax=Candidatus De... 424 e-117 UniRef50_A6DHN1 ATP-dependent exoDNAse (Exonuclease V), alpha su... 424 e-117 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 423 e-116 UniRef50_D0LH80 Helicase, RecD/TraA family n=1 Tax=Haliangium oc... 422 e-116 UniRef50_B0MLK7 Putative uncharacterized protein n=1 Tax=Eubacte... 420 e-116 UniRef50_B8J4Q4 Helicase, RecD/TraA family n=9 Tax=Bacteria RepI... 420 e-116 UniRef50_D2RL74 Helicase, RecD/TraA family n=2 Tax=Acidaminococc... 420 e-116 UniRef50_B8FBC1 Helicase, RecD/TraA family n=1 Tax=Desulfatibaci... 419 e-115 UniRef50_A9KS02 Helicase, RecD/TraA family n=32 Tax=Bacteria Rep... 419 e-115 UniRef50_A6L5S1 ATP-dependent exonuclease V, alpha subunit-helic... 415 e-114 UniRef50_C9RK23 Helicase, RecD/TraA family n=1 Tax=Fibrobacter s... 415 e-114 UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ac... 413 e-113 UniRef50_A1KCB0 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 412 e-113 UniRef50_D0L8X2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Co... 411 e-113 UniRef50_C0ZAR4 Putative uncharacterized protein n=1 Tax=Breviba... 411 e-113 UniRef50_UPI0001C37B34 RecD/TraA family helicase n=1 Tax=Ruminoc... 411 e-113 UniRef50_B2A8J3 Helicase, RecD/TraA family n=2 Tax=Clostridia Re... 410 e-113 UniRef50_Q8K9A8 Exodeoxyribonuclease V alpha chain n=4 Tax=Buchn... 410 e-113 UniRef50_Q2LTP5 Exodeoxyribonuclease V alpha chain n=22 Tax=Bact... 410 e-112 UniRef50_A5CCM9 Helicase RecD/TraA, ATP-dependent exoDNAse (Exon... 410 e-112 UniRef50_C0AD34 Exodeoxyribonuclease V n=2 Tax=Verrucomicrobia R... 408 e-112 UniRef50_UPI0001C3224F exodeoxyribonuclease V, alpha subunit n=2... 408 e-112 UniRef50_A6GES1 Exodeoxyribonuclease V n=1 Tax=Plesiocystis paci... 407 e-112 UniRef50_A1HT63 Helicase, RecD/TraA family n=1 Tax=Thermosinus c... 407 e-112 UniRef50_O34481 Uncharacterized protein yrrC n=119 Tax=Bacillale... 405 e-111 UniRef50_C6BXI3 Helicase, RecD/TraA family n=5 Tax=Desulfovibrio... 405 e-111 UniRef50_A3ETY4 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Le... 405 e-111 UniRef50_A8SM75 Putative uncharacterized protein n=1 Tax=Parvimo... 404 e-111 UniRef50_C5SD04 Helicase, RecD/TraA family n=1 Tax=Allochromatiu... 404 e-111 UniRef50_B0P921 Putative uncharacterized protein n=2 Tax=Clostri... 403 e-111 UniRef50_A6NZ80 Putative uncharacterized protein n=1 Tax=Bactero... 403 e-111 UniRef50_D1PL62 Helicase, RecD/TraA family n=3 Tax=Ruminococcace... 403 e-111 UniRef50_D1U587 Helicase, RecD/TraA family n=2 Tax=Desulfovibrio... 402 e-110 UniRef50_B0TIF8 Exodeoxyribonuclease V, alpha chain, RecD n=1 Ta... 402 e-110 UniRef50_C8XGW8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Na... 402 e-110 UniRef50_A6TL79 Helicase, RecD/TraA family n=35 Tax=Bacteria Rep... 398 e-109 UniRef50_C0VHS0 Exonuclease V alpha subunit n=7 Tax=Acinetobacte... 398 e-109 UniRef50_B2A0E3 Helicase, RecD/TraA family n=3 Tax=Bacteria RepI... 398 e-109 UniRef50_C9KLF6 Helicase, RecD/TraA family n=3 Tax=Veillonellace... 397 e-109 UniRef50_B0S3H7 ATP-dependent exodeoxyribonuclease alpha subunit... 397 e-109 UniRef50_B4VXL3 Putative uncharacterized protein n=1 Tax=Microco... 397 e-109 UniRef50_A8ZX97 Helicase, RecD/TraA family n=1 Tax=Desulfococcus... 396 e-108 UniRef50_C0QEU8 RecD1 n=2 Tax=Desulfobacterales RepID=C0QEU8_DESAH 396 e-108 UniRef50_C7RH25 Helicase, RecD/TraA family n=4 Tax=Anaerococcus ... 396 e-108 UniRef50_B2JBK4 Exodeoxyribonuclease V, alpha chain n=2 Tax=Nost... 396 e-108 UniRef50_A5EVY1 Exonuclease V, alpha subunit n=1 Tax=Dichelobact... 395 e-108 UniRef50_B4RTM2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 395 e-108 UniRef50_A5WER9 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ps... 395 e-108 UniRef50_Q14LX3 Putative exodeoxyribonuclease v alpha subunit pr... 394 e-108 UniRef50_Q8R8A3 ATP-dependent exoDNAse (Exonuclease V), alpha su... 394 e-108 UniRef50_Q3AB49 Helicase, RecD/TraA family n=1 Tax=Carboxydother... 393 e-107 UniRef50_UPI0001AEC2FF exodeoxyribonuclease V, alpha subunit n=1... 392 e-107 UniRef50_C8P085 RecD/TraA family helicase n=1 Tax=Erysipelothrix... 392 e-107 UniRef50_D0W4K0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ne... 392 e-107 UniRef50_A6W6P3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ki... 392 e-107 UniRef50_UPI0000E0F58B exodeoxyribonuclease V, alpha subunit n=1... 391 e-107 UniRef50_A4S3Z4 Predicted protein (Fragment) n=37 Tax=Eukaryota ... 391 e-107 UniRef50_D1VRZ7 Helicase, RecD/TraA family n=1 Tax=Peptoniphilus... 391 e-107 UniRef50_Q12LP3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Sh... 391 e-107 UniRef50_Q04B55 ATP-dependent DNA helicase, RecD/TraA family n=2... 391 e-107 UniRef50_C7IID4 Exonuclease V subunit alpha n=1 Tax=Clostridium ... 390 e-107 UniRef50_A9WGW5 Helicase, RecD/TraA family n=4 Tax=Chloroflexi (... 390 e-106 UniRef50_Q057F4 Exodeoxyribonuclease V, a chain n=1 Tax=Buchnera... 389 e-106 UniRef50_C7H0P7 Helicase, RecD/TraA family n=1 Tax=Eubacterium s... 389 e-106 UniRef50_P96919 Exodeoxyribonuclease V alpha chain n=27 Tax=Acti... 387 e-106 UniRef50_C2KY21 Possible exodeoxyribonuclease V alpha subunit n=... 387 e-106 UniRef50_A7VSJ6 Putative uncharacterized protein n=1 Tax=Clostri... 387 e-106 UniRef50_B8I4C3 Exonuclease V subunit alpha n=1 Tax=Clostridium ... 387 e-106 UniRef50_Q6MFB5 Putative exodeoxyribonuclease V alpha chain recD... 386 e-105 UniRef50_C0QIP1 RecD3 n=1 Tax=Desulfobacterium autotrophicum HRM... 385 e-105 UniRef50_Q5WHN2 ATP-dependent exoDNAse alpha subunit n=2 Tax=Bac... 385 e-105 UniRef50_D0LWH5 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 384 e-105 UniRef50_A5N3G4 Predicted exodeoxyribonuclease n=26 Tax=Clostrid... 383 e-105 UniRef50_B4RLU6 RecD n=26 Tax=Neisseria RepID=B4RLU6_NEIG2 381 e-104 UniRef50_C3CTA5 Helicase RecD/TraA n=1 Tax=Bacillus thuringiensi... 381 e-104 UniRef50_A8SRT9 Putative uncharacterized protein n=1 Tax=Coproco... 380 e-103 UniRef50_C7Q0I8 Helicase, RecD/TraA family n=1 Tax=Catenulispora... 379 e-103 UniRef50_C9LLQ3 Helicase, RecD/TraA family n=1 Tax=Dialister inv... 379 e-103 UniRef50_C8PVE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=En... 378 e-103 UniRef50_Q6ANK0 Related to exodeoxyribonuclease V, alpha chain n... 378 e-103 UniRef50_C4V2J7 Exodeoxyribonuclease V alpha subunit n=1 Tax=Sel... 378 e-103 UniRef50_Q1J056 Helicase RecD/TraA n=3 Tax=Deinococcus RepID=Q1J... 377 e-103 UniRef50_Q039P4 ATP-dependent DNA helicase, RecD/TraA family n=9... 377 e-103 UniRef50_B1C665 Putative uncharacterized protein n=1 Tax=Anaerof... 377 e-103 UniRef50_B0P898 Putative uncharacterized protein n=3 Tax=Bacteri... 377 e-103 UniRef50_A5ZS54 Putative uncharacterized protein n=2 Tax=Clostri... 375 e-102 UniRef50_D2ELG1 RecD/TraA family helicase n=1 Tax=Pediococcus ac... 375 e-102 UniRef50_C1MI09 Predicted protein n=1 Tax=Micromonas pusilla CCM... 375 e-102 UniRef50_C0XKM5 Exodeoxyribonuclease V alpha subunit n=3 Tax=Lac... 375 e-102 UniRef50_D2AQX1 Exodeoxyribonuclease V n=1 Tax=Streptosporangium... 374 e-102 UniRef50_UPI00016C0EC6 helicase, RecD/TraA family protein n=1 Ta... 374 e-102 UniRef50_C3RPY6 Exonuclease V subunit alpha n=1 Tax=Mollicutes b... 374 e-102 UniRef50_C6VR87 Exodeoxyribonuclease V, alpha chain n=44 Tax=Bac... 374 e-102 UniRef50_C4GL20 Putative uncharacterized protein n=1 Tax=Kingell... 374 e-102 UniRef50_B5JHU9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ve... 373 e-101 UniRef50_C6HV36 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Le... 373 e-101 UniRef50_Q6FF15 Exonuclease V, alpha subunit n=11 Tax=Acinetobac... 372 e-101 UniRef50_A8VTZ2 Exodeoxyribonuclease V n=1 Tax=Bacillus seleniti... 372 e-101 UniRef50_Q0BMQ9 Exodeoxyribonuclease V n=20 Tax=Francisella RepI... 371 e-101 UniRef50_Q03EZ9 ATP-dependent DNA helicase, RecD/TraA family n=1... 370 e-101 UniRef50_Q1WTZ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Lacto... 370 e-101 UniRef50_Q8NW86 MW1569 protein n=68 Tax=Bacillales RepID=Q8NW86_... 370 e-100 UniRef50_D0BKH5 Helicase, RecD/TraA family n=2 Tax=Granulicatell... 369 e-100 UniRef50_C0DUX7 Putative uncharacterized protein n=1 Tax=Eikenel... 369 e-100 UniRef50_Q8EPS6 Conjugation transfer protein n=1 Tax=Oceanobacil... 369 e-100 UniRef50_B7J7Z5 Helicase, RecD/TraA family n=1 Tax=Acidithiobaci... 369 e-100 UniRef50_D1BM66 Helicase, RecD/TraA family n=3 Tax=Veillonella R... 368 e-100 UniRef50_A0LD23 Helicase, RecD/TraA family n=1 Tax=Magnetococcus... 367 e-100 UniRef50_C8PAU3 Exodeoxyribonuclease V alpha subunit n=1 Tax=Lac... 367 1e-99 UniRef50_B2I7Y3 Exodeoxyribonuclease V, alpha subunit n=10 Tax=X... 366 1e-99 UniRef50_C4FTN2 Putative uncharacterized protein n=1 Tax=Catonel... 363 8e-99 UniRef50_D1B8Y6 Helicase, RecD/TraA family n=1 Tax=Thermanaerovi... 363 1e-98 UniRef50_C8NA26 Probable exonuclease V, alpha subunit n=1 Tax=Ca... 362 2e-98 UniRef50_C2E8D7 Exodeoxyribonuclease V alpha chain n=1 Tax=Lacto... 362 2e-98 UniRef50_A8RCB5 Putative uncharacterized protein n=1 Tax=Eubacte... 361 5e-98 UniRef50_C9B1G0 Helicase RecD/TraA n=4 Tax=Enterococcus RepID=C9... 361 6e-98 UniRef50_Q8PEL4 Exodeoxyribonuclease V alpha chain n=1 Tax=Xanth... 360 1e-97 UniRef50_B2G6M2 Exodeoxyribonuclease V alpha subunit n=8 Tax=Lac... 359 2e-97 UniRef50_A6P2F0 Putative uncharacterized protein n=1 Tax=Bactero... 358 3e-97 UniRef50_UPI0001B44E5F RecD/TraA family helicase n=1 Tax=Clostri... 357 6e-97 UniRef50_C5RAF5 Exodeoxyribonuclease V alpha subunit n=1 Tax=Wei... 356 1e-96 UniRef50_C3RKU1 Exodeoxyribonuclease subunit V alpha n=4 Tax=Bac... 355 2e-96 UniRef50_B1MY70 ATP-dependent exoDNAse (Exonuclease V), alpha su... 355 4e-96 UniRef50_A9NFP8 ATP-dependent exoDNAse (Exonuclease V), alpha su... 353 1e-95 UniRef50_D1R7X6 Putative uncharacterized protein n=1 Tax=Parachl... 353 1e-95 UniRef50_B1YJE6 Helicase, RecD/TraA family n=2 Tax=Exiguobacteri... 353 2e-95 UniRef50_D2S6B9 Exodeoxyribonuclease V n=1 Tax=Geodermatophilus ... 351 6e-95 UniRef50_D2U880 Probable exodeoxyribonuclease v, alpha subunit p... 351 6e-95 UniRef50_C5B4P9 Putative Helicase, RecD/TraA family n=1 Tax=Meth... 350 1e-94 UniRef50_Q310C7 ATP-dependent DNA helicase, RecD/TraA family n=4... 350 1e-94 UniRef50_UPI0001C367B5 helicase, RecD/TraA family protein n=1 Ta... 346 1e-93 UniRef50_Q04YR4 Exodeoxyribonuclease V, alpha subunit n=4 Tax=Le... 345 4e-93 UniRef50_A2C8A4 Possible exodeoxyribonuclease V 67 kD polypeptid... 343 1e-92 UniRef50_B9YCG7 Putative uncharacterized protein n=1 Tax=Holdema... 342 2e-92 UniRef50_A0R7T4 ATPase n=1 Tax=Pelobacter propionicus DSM 2379 R... 341 3e-92 UniRef50_D2MPX0 Helicase, RecD/TraA family n=1 Tax=Bulleidia ext... 339 2e-91 UniRef50_Q314D9 ATP-dependent DNA helicase, RecD/TraA family n=1... 338 4e-91 UniRef50_Q6A849 Exonuclease V, alpha chain n=3 Tax=Propionibacte... 338 5e-91 UniRef50_Q0IBA7 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Sy... 337 9e-91 UniRef50_B0SIS5 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Le... 336 1e-90 UniRef50_Q3BM41 Exodeoxyribonuclease V alpha chain n=8 Tax=Xanth... 333 2e-89 UniRef50_A9BB03 Possible exodeoxyribonuclease V 67 kD polypeptid... 331 5e-89 UniRef50_A4VZ41 ATP-dependent exoDNAse (Exonuclease V), alpha su... 331 5e-89 UniRef50_C7XTE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=La... 326 1e-87 UniRef50_B7C7R4 Putative uncharacterized protein (Fragment) n=1 ... 326 1e-87 UniRef50_C5NYT1 Helicase, RecD/TraA family n=1 Tax=Gemella haemo... 326 2e-87 UniRef50_C6J5U6 Exodeoxyribonuclease V (Fragment) n=1 Tax=Paenib... 325 4e-87 UniRef50_A8S078 Putative uncharacterized protein n=1 Tax=Clostri... 323 9e-87 UniRef50_Q04EW7 ATP-dependent DNA helicase, RecD/TraA family n=2... 323 1e-86 UniRef50_Q30PF5 ATPase n=2 Tax=Campylobacterales RepID=Q30PF5_SULDN 323 1e-86 UniRef50_C9LC87 Helicase, RecD/TraA family n=6 Tax=Clostridiales... 322 2e-86 UniRef50_A5IZI9 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycop... 320 1e-85 UniRef50_C8X8R3 Exodeoxyribonuclease V n=1 Tax=Nakamurella multi... 320 1e-85 UniRef50_B5IMW7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Cy... 319 2e-85 UniRef50_Q6F1E4 Exodeoxyribonuclease V n=1 Tax=Mesoplasma florum... 319 2e-85 UniRef50_Q97JX9 Exodeoxyribonuclease V, Alpha subunit, RecD n=1 ... 318 4e-85 UniRef50_Q7VBJ9 ATP-dependent exoDNAse alpha subunit n=1 Tax=Pro... 318 5e-85 UniRef50_Q6N7J7 Possible Viral (Superfamily 1) RNA helicase n=1 ... 317 8e-85 UniRef50_A6P2H5 Putative uncharacterized protein n=1 Tax=Bactero... 316 2e-84 UniRef50_Q46K41 DNA helicase/exodeoxyribonuclease V, alpha subun... 316 2e-84 UniRef50_C3CUT3 Helicase, RecD/TraA n=1 Tax=Bacillus thuringiens... 315 3e-84 UniRef50_A4JFN0 AAA ATPase n=1 Tax=Burkholderia vietnamiensis G4... 315 3e-84 UniRef50_D1J8K8 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycop... 314 5e-84 UniRef50_UPI0001C31D3E helicase, RecD/TraA family n=1 Tax=Conexi... 313 1e-83 UniRef50_Q6KIJ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Mycop... 313 2e-83 UniRef50_C5B4H6 Putative Helicase, RecD/TraA family n=1 Tax=Meth... 311 4e-83 UniRef50_A4AB31 Putative uncharacterized protein n=1 Tax=Congreg... 311 5e-83 UniRef50_Q3AX67 DNA helicase/exodeoxyribonuclease V, alpha subun... 311 6e-83 Sequences not found previously or not previously below threshold: >UniRef50_P04993 Exodeoxyribonuclease V alpha chain n=123 Tax=Enterobacteriaceae RepID=EX5A_ECOLI Length = 608 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 608/608 (100%), Positives = 608/608 (100%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN Sbjct: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA Sbjct: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT Sbjct: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL Sbjct: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ Sbjct: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR Sbjct: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD Sbjct: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR Sbjct: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK Sbjct: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL Sbjct: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 Query: 601 AALFSSRE 608 AALFSSRE Sbjct: 601 AALFSSRE 608 >UniRef50_A7FFE8 Exodeoxyribonuclease V, alpha subunit n=30 Tax=Enterobacteriaceae RepID=A7FFE8_YERP3 Length = 657 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 360/653 (55%), Positives = 445/653 (68%), Gaps = 49/653 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN- 61 + L +A + LRPLDVQF+ +AGD+ P + LAAA+LS + G GHVCLPL L+ Sbjct: 1 MMTLLAQAARDRLLRPLDVQFSRMIAGDDDPRLQLAAAILSAEVGAGHVCLPLRYLQPEL 60 Query: 62 --EASHPLLATCVSEI---GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 P L+ + + + W + L + VS G +PTP++L +RLYL RMW E Sbjct: 61 LFGGRQPDLSLALWQAAGSPDKAQWLQALQNAPVVSDGSQPTPLVLQQERLYLQRMWQYE 120 Query: 117 RTVARFF--------------NEVNHAIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVA 161 V +F A VDE+LL +TLD LF + E++WQKVAAAVA Sbjct: 121 GDVVQFIASDSVFINRDSDFMTSKGIATSVDESLLRETLDALFGYAGSEVDWQKVAAAVA 180 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 TRRISVISGGPGTGKTTTVAKLL ALI+++ G+R RI+LAAPTGKAAARLTESLGKA+R Sbjct: 181 ATRRISVISGGPGTGKTTTVAKLLTALIRISQGQRLRIQLAAPTGKAAARLTESLGKAIR 240 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 Q LTD+++K P+ ASTLHRLLG QP SQRLR+H GNPL+LDVLVVDEASM+DLPMM+R Sbjct: 241 QFSLTDDERKLFPDQASTLHRLLGVQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMAR 300 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV---- 337 LI ALP A+VIFLGDRDQLASVEAGAVLGDIC +A G++ +RA+QL++LTG + Sbjct: 301 LIAALPAKAKVIFLGDRDQLASVEAGAVLGDICRFAELGYSEQRAQQLTQLTGYLLTNNA 360 Query: 338 ---------------------PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 P T +++A++RDSLCLL+KSYRF SGIGQLA A+N Sbjct: 361 LTSNVLASNVLTNKALANKAQPDETYSDSANVRDSLCLLRKSYRFDEKSGIGQLALAVNA 420 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 G+ +V ++D+E+ L EDY +LE GY YL+ + A A ++ AF Sbjct: 421 GEYRQALSVLNSAYSDVERFPLADEEDYQVLLEACAVGYQHYLERVAALAPAAEVLAAFG 480 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR--HPHSRWYEGRPVMIARNDSALGLF 494 YQLLCALR GPFGV+GLNERIEQ + +K I R P RWY GRPVMI NDSALGLF Sbjct: 481 RYQLLCALRSGPFGVSGLNERIEQVLHRKGFIIRPSGPSGRWYVGRPVMIELNDSALGLF 540 Query: 495 NGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 NGDIGIAL +G RV+F +PDGNIKSVQPSRLP HET +AMTVHKSQGSEF+H AL+L Sbjct: 541 NGDIGIALHDNEGELRVYFQLPDGNIKSVQPSRLPSHETAYAMTVHKSQGSEFEHTALVL 600 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 P+ PV+TRELVYTA+TRAR+ L+LY + +LS AI T T R SGL ++ Sbjct: 601 PNTFMPVLTRELVYTAITRARQHLTLYCSDAVLSHAIRTPTLRLSGLVDRLNT 653 >UniRef50_C4K847 Exonuclease V (RecBCD complex), alpha chain n=18 Tax=Enterobacteriaceae RepID=C4K847_HAMD5 Length = 628 Score = 606 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 318/627 (50%), Positives = 419/627 (66%), Gaps = 23/627 (3%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN- 61 + L +A++ K LR LDVQFA +A P + LA ALLS DAG GHVCLPL+RL Sbjct: 1 MMGLLNQALDQKLLRFLDVQFAQIIAAHHSPLLQLACALLSSDAGAGHVCLPLARLAPEY 60 Query: 62 --EASHPLLATCVSEI---GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 + HP LA + + W +S V G PTP++L +RLYL RMW NE Sbjct: 61 FFDGRHPELAEALWQAAGKPNKNAWLNAFQSSSLVGEGTSPTPLVLEKERLYLQRMWKNE 120 Query: 117 RTVARFFN----EVNHAIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVALTRRISVISG 171 V +F + E + DE L Q LD+LF ++ +IN+QKVAAAVA+T ++++ISG Sbjct: 121 GQVIQFISDYSLEKMTYHKKDECRLKQILDQLFTSNESDINFQKVAAAVAITSKVAIISG 180 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GPGTGKTTTVAKLL ALI++A RI LAAPTGKAA RLT+SLG A R+L L+ + + Sbjct: 181 GPGTGKTTTVAKLLTALIRLAGERTLRIELAAPTGKAAVRLTQSLGNAYRELSLSAGESR 240 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 R+PE A TLHRLLGA + R+H NPL LDVLVVDEASM+DLPM++RLIDALP+ A+ Sbjct: 241 RLPEKACTLHRLLGAYSKGHQSRYHKNNPLDLDVLVVDEASMVDLPMLARLIDALPNSAQ 300 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTH-----VPAGTGTEAA 346 VIFLGDRDQLASVEAG+VLG+I + + G++ RA +L+RLTG + A Sbjct: 301 VIFLGDRDQLASVEAGSVLGEIGRFLSLGYSTSRAEELNRLTGYDLKGHPIEHFPNLCVA 360 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ---DFTDIEKRLLQSGED 403 + D LCLL K+YRF SGIG+LA A+N G+ ++ + + DI + L +D Sbjct: 361 HVCDQLCLLNKNYRFDKKSGIGELAQAVNSGEHHKAHSILRDVNKKYVDIRQHALSDAKD 420 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 Y +L++ +A Y YL+L++ +P+ I+ AFN YQLLCALR G FG+ GLN +IE+ + Sbjct: 421 YQKLLKDCVAAYQPYLELIKQGKDPETILHAFNRYQLLCALRTGSFGLEGLNTQIEKTLC 480 Query: 464 QKRKI---HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNI 519 + + ++ WY GRP+MI NDS+LGLFNGD+G+ L D RV+F DG+I Sbjct: 481 HSGLLSLSQKPFNNSWYSGRPIMIECNDSSLGLFNGDLGMTLYDHSGALRVYFQFSDGHI 540 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 KSVQP+RLP H T +AMTVHKSQGSEF+H AL+LP TP+VTRELVYTA+TRAR++L+L Sbjct: 541 KSVQPNRLPAHSTAYAMTVHKSQGSEFEHTALVLPDHFTPIVTRELVYTAITRARQKLTL 600 Query: 580 YADERILSAAIATRTERRSGLAALFSS 606 Y+ +++L+ AI T T+RRSGL A S Sbjct: 601 YSTDKVLNHAILTPTQRRSGLVARLKS 627 >UniRef50_Q2LTC7 Exodeoxyribonuclease V alpha chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTC7_SYNAS Length = 670 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 262/643 (40%), Positives = 350/643 (54%), Gaps = 61/643 (9%) Query: 16 LRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHP------ 66 LD F + +G ++ V LAAAL S GHVCL L+ Sbjct: 26 FSDLDRHFGRLMEKISGGDNQDVFLAAALTSRSNRGGHVCLDLAEYAGRPLMADIREEPE 85 Query: 67 ------LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGD-RLYLNRMWCNERTV 119 + + + L W E LLA V E P+IL RLYL R W E T+ Sbjct: 86 DEILEEMPESILLSCPPLSIWRETLLACSVVGTPGEYKPLILDDKSRLYLYRYWSYEDTL 145 Query: 120 ARFFN-----------EVNHAIEVDEALLAQTLDKLFPVSDE------------INWQKV 156 RF + +D + L L FP +WQK+ Sbjct: 146 VRFIKSCGNPAESEDFRKISNVSLDLSGLGHNLQTFFPEDAGQFRFEDDKSKIFPDWQKI 205 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 AA L R+ VISG PGTGKTTT A+ LA L ++ G + RI LAAPTGKAA RL E++ Sbjct: 206 AALAVLRNRLVVISGSPGTGKTTTAARALALLQILSRGPKLRIALAAPTGKAAVRLDEAM 265 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 A ++ L D+Q K A T+HRLLG GS RH GNPL DV+VVDEASM+DL Sbjct: 266 NSAYARVGLNDQQGK-----AMTVHRLLGTVAGSPYFRHGPGNPLPYDVIVVDEASMVDL 320 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG--FTAERARQLSRLTG 334 P+M++L+ AL +R+I LGDRDQLASVEAGAVLGD+C +AG F+ +++ R+TG Sbjct: 321 PLMAKLVQALSPASRLILLGDRDQLASVEAGAVLGDLCGPDDAGNFFSQAFRQEIRRMTG 380 Query: 335 T---------HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 H+P + DS+ LQK+YRF +SGIGQL+ A+NRGDK V ++ Sbjct: 381 ESCLPPVPFRHLPPVPFRHLPPVSDSMVQLQKNYRFDENSGIGQLSRAVNRGDKDRVFSI 440 Query: 386 FQQDF-TDIEKRLLQSGEDYIAMLEEALAGY-GRYLDLLQARAEPDLIIQAFNEYQLLCA 443 +DI L ++EE L Y +Y+ ++ P++I F +++LCA Sbjct: 441 LNSSRCSDIAWENLPDPLGLPRLIEENLIHYFRKYMQMVINNDNPEVIFDYFERFRILCA 500 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 LR GPFGV +N +E ++ +R I RWY GRP+MI RND +LGLFNGD+G+ L Sbjct: 501 LRRGPFGVVYVNALLESMLRSERLI--AGSGRWYPGRPIMINRNDYSLGLFNGDVGLTLP 558 Query: 504 R--GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 G G V+F +GN + P RLPEHET +AMTVHKSQGSEFD +IL + +P++ Sbjct: 559 EHGGSGLSVFFRDSEGNFRRFAPFRLPEHETVYAMTVHKSQGSEFDEVLMILSDRDSPLL 618 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 TREL+YT V+RA++ L L+ E I+ AI+ R +R SGL Sbjct: 619 TRELIYTGVSRAKKGLLLWGREDIIRQAISRRIKRTSGLRDAL 661 >UniRef50_D0ICR8 Exodeoxyribonuclease V alpha chain n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0ICR8_VIBHO Length = 665 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 303/669 (45%), Positives = 394/669 (58%), Gaps = 66/669 (9%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSR 57 M + ++L + +R +D QF+ + GDE+ V AAL+S + G+G+VC+ LS Sbjct: 1 MAISEKLEALYKRNAIRAIDRQFSQFIGEQLGDENSPVVGWAALVSFELGKGNVCVDLSA 60 Query: 58 LENNEASHPLLATC--VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 LE + A ++ + +N L AS V G +PTP++L G RLYL R W Sbjct: 61 LEGARLFDLMPAESASLAALMVPENALSMLSASPVVGDGSQPTPLVLSGSRLYLYRYWAA 120 Query: 116 ERTVARFFNEVNHAIEV---------------------------DEALLAQTLD------ 142 E V + + + + DE A+ D Sbjct: 121 ECLVVSEIAKRSGELPLPMNLRSVLDGLFTPDVAFLRARYPQWTDEEKAAKLADFFDITD 180 Query: 143 -----------------------KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 P +NWQKVAAAVAL+ R +VISGGPGTGKTT Sbjct: 181 SSQIDYHALQAALEAGVSDNDVLSHVPDGARLNWQKVAAAVALSSRFAVISGGPGTGKTT 240 Query: 180 TVAKLLAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TVAKLLAA++ +D I+L APTGKAA RLTES+GKA+ LP+TD +++IP AS Sbjct: 241 TVAKLLAAIVSSSDNPNGPEIKLVAPTGKAANRLTESIGKAVEALPVTDSVRRKIPAQAS 300 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLLGA P RHH GN LHLDVLVVDEASM+DLP+M+RL+ ALP+HARVI LGDR Sbjct: 301 TIHRLLGAIPNRVEFRHHQGNRLHLDVLVVDEASMVDLPLMARLLSALPEHARVILLGDR 360 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQLASVEAGAVLGDIC A GF+ RA+ LS LTG +P G A + DS+CLL+KS Sbjct: 361 DQLASVEAGAVLGDICLGAGQGFSPPRAKLLSALTGFVLPEAAGLPA--VADSVCLLRKS 418 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 YRF + SG+GQLA AIN GD + V Q F DI L + + Y + A+ GY Y Sbjct: 419 YRFHAQSGVGQLAYAINAGDTRTLDRVIQSGFRDIALHELDT-DIYSEAIHLAVQGYRPY 477 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 L + P +++ F+E +LLCAL +GPFGV GLN IE+ + + + S +Y Sbjct: 478 LTAMVDGLPPRDVLRRFSECRLLCALSDGPFGVKGLNSVIEKALAKAGLVSPGEES-FYP 536 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 GRPVM+ +ND LGL+NGDIGI + + +G RV F M DG +++ PSRLPEH+T +AMT+ Sbjct: 537 GRPVMVTQNDHGLGLYNGDIGIVVKQEEGLRVVFEMADGTVRAFLPSRLPEHQTAYAMTI 596 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF H L+LP TPV+TRELVYT VTRA+ RL +YA L A+ + +R S Sbjct: 597 HKSQGSEFSHTILVLPPTPTPVMTRELVYTGVTRAKDRLDVYATRASLERAVKRKNQRFS 656 Query: 599 GLAALFSSR 607 GLA +R Sbjct: 657 GLADALRAR 665 >UniRef50_B9M4M2 Exodeoxyribonuclease V, alpha subunit n=8 Tax=Desulfuromonadales RepID=B9M4M2_GEOSF Length = 609 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 245/604 (40%), Positives = 350/604 (57%), Gaps = 29/604 (4%) Query: 16 LRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 +D FA + A + + LAAAL S G+VCL L+ + + A + Sbjct: 16 FSDMDRHFAAFMCRLASSDDKELWLAAALASQAVSNGNVCLDLTDVCQSAAGY------- 68 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTVARFFNEVNHAIE 131 EI + W L V + TP++L +RLYL+R W E +AR + Sbjct: 69 -EIDDPAAWSARLRELPVVGAPGDFTPLVLDSANRLYLHRYWSYESDLARALLRLADNKP 127 Query: 132 V-DEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 V D LL + + +LFP + E +WQ++AA ++R+I+VI+GGPGTGKT+TV ++L L Sbjct: 128 VFDRELLREGMSRLFPEGNAGETDWQQLAALACVSRQITVIAGGPGTGKTSTVFRVLILL 187 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 I+ A +C I LAAPTGKAA RL ES+ A +P+++ ++IP +T+HRLLG P Sbjct: 188 IEQATAGKCHIALAAPTGKAAGRLGESIISARSGMPVSEHVLQQIPNQVTTIHRLLGHVP 247 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 GS R R++ NPL DV+VVDEASM+ LP+M++L+DAL D R+I LGDRDQLASVEAGA Sbjct: 248 GSSRFRYNRDNPLPFDVVVVDEASMVSLPLMAKLVDALRDTTRLILLGDRDQLASVEAGA 307 Query: 309 VLGDICAYANAGFTAERARQLSR---LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 VLGDIC ++ ++ R L+ G + + L DS+ +L+KSYRFG+DS Sbjct: 308 VLGDICNTGSSQRLSKAFRDLAEEVIGPGAAIEYADDADVHHLNDSIIVLRKSYRFGADS 367 Query: 366 GIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQ 423 GIG+L +N G+ A++ + Q + D+ R E L + G+ YL Sbjct: 368 GIGELGRLVNEGNGAAALELLSGQKYADLLFRENTGMEKLQEALAVTITDGFRPYL---- 423 Query: 424 ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 + + ++++LCALR+GPFG +N + + + +K I PH RWY G+PVM Sbjct: 424 MAKTAESAFASLADFRILCALRQGPFGTEAVNRLVAKILAEKGLI--RPHGRWYAGQPVM 481 Query: 484 IARNDSALGLFNGDIGIALDR---GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 + RND L LFNGDIGI L R +F DG+++S+ P RLPEHET +AMTVHK Sbjct: 482 VTRNDYNLRLFNGDIGIILPDPAADNELRAFFTTTDGSLRSILPLRLPEHETAFAMTVHK 541 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEF L+LP + + V+TREL+YTA+TRA+ + + + + A RT R+SGL Sbjct: 542 SQGSEFSRILLLLPDRHSEVLTRELIYTALTRAKTGVEVCGPGDVFVKSSARRTLRKSGL 601 Query: 601 AALF 604 Sbjct: 602 REAL 605 >UniRef50_C4L7B4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B4_TOLAT Length = 632 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 286/616 (46%), Positives = 373/616 (60%), Gaps = 25/616 (4%) Query: 10 AVEHKQLRPLDVQFALTVA-GDEHPAVTLAAALLSHDAGEGHVCLPLS----RLENNEAS 64 +E + LR LDVQ A +A D +V LA AL S + G GHVC LS RL +A Sbjct: 15 LLEARLLRDLDVQLAQLLARWDADESVQLAVALTSQELGRGHVCFDLSTWPERLAQWQAQ 74 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPT-------PMILCGDRLYLNRMWCNER 117 A E + + L S V +P+ P+ L RLYL+R + E+ Sbjct: 75 LSQAALSWPETT-VAALDAKLQQSPLVRVITDPSDAEEQGQPLTLFAGRLYLSRYFRFEQ 133 Query: 118 TVARFFNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 VA + + + + V+ LA L +LF E +WQ VA A A R ++ISGGPGT Sbjct: 134 QVACWLQQASLPADNAVNATELAAQLRQLFTPQPETDWQAVAVATACEGRFTLISGGPGT 193 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP--LTDEQKKRI 233 GKTTTV KLLA L+ ++ + IRLAAPTGKAAARLTES+ KA +L + + + I Sbjct: 194 GKTTTVTKLLALLVAQSE-QSLLIRLAAPTGKAAARLTESIAKAKTELATQVNADWLEGI 252 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 P ASTLHRLLG PG RHHA NPL LDVLVVDEASMIDLPMM+RL+ ALP AR+I Sbjct: 253 PTQASTLHRLLGVIPGQPEFRHHAQNPLPLDVLVVDEASMIDLPMMARLLAALPPQARLI 312 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 LGD+DQLASVEAGAVLGDIC + G + +A L + TG + L D LC Sbjct: 313 LLGDKDQLASVEAGAVLGDICRFVAQGISQPQAECLQQRTGYDLQPYVQVTGHPLCDRLC 372 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 LL+KS+RF +DSGIG+LA A+N GD+ + V+ +D+ DI RL + ++ A Sbjct: 373 LLRKSWRFAADSGIGKLAEAVNNGDEKTAQAVWTRDYRDI--RLHSDEQRLEMAVKLAAE 430 Query: 414 GYGRYLDLLQARAEPD---LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 GY YL LL + ++QAFN+ +LLCAL +GP+G+ G+N+ I Q +Q + ++ Sbjct: 431 GYHAYLALLDKPMSAEGAVALLQAFNQIRLLCALHDGPWGINGMNQAIGQRLQTQGRLQM 490 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEH 530 W+ GRPVMI ND LGL+NGDIGIA G+ RVWF +PDG PSRLP H Sbjct: 491 TAD--WFAGRPVMITENDYGLGLYNGDIGIAASDGERLRVWFVLPDGKAHGFLPSRLPAH 548 Query: 531 ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 +T WAMTVHKSQGSEF H L+LP + P++TREL+YT +TRAR +L L+A +L+ + Sbjct: 549 DTAWAMTVHKSQGSEFTHTLLLLPPETNPLLTRELLYTGITRAREQLDLFATPEVLALMV 608 Query: 591 ATRTERRSGLAALFSS 606 +TER SGL + + Sbjct: 609 RKQTERYSGLVTMLET 624 >UniRef50_Q2BKD7 Exodeoxyribonuclease V alpha chain n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKD7_9GAMM Length = 614 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 281/606 (46%), Positives = 367/606 (60%), Gaps = 15/606 (2%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGD--EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEAS 64 L E+ +R +D QFA VA P + AAL+S + G+VCLP RL + + Sbjct: 11 LKGWAENGLIRNVDFQFAKLVAEQKPSQPQLIYLAALVSFELASGNVCLPKLRLLSAKGY 70 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRG--DEPTPMILCGDRLYLNRMWCNERTVARF 122 + + Q+W + + + D T ++ +R YL R W E +A Sbjct: 71 WD---EEIESVINQQDWSSLKAEAFILGQPELDSNTLLLFDQERFYLKRYWEYESAIASQ 127 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 ++VD ALL + L +LFP+++ EI+WQKVAAAVA+ +R SVISGGPGTGKTTTV Sbjct: 128 LINRAQTVDVDRALLKEGLAELFPMANQEIDWQKVAAAVAVQKRFSVISGGPGTGKTTTV 187 Query: 182 AKLLAALIQMADGE--RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 KLLA I A I+L APTGKAAARL ES+ A ++L L + + IPE A T Sbjct: 188 IKLLALYIAQAKAHSRNINIKLVAPTGKAAARLGESISSAKQRLSLDADIAELIPEQAGT 247 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 LHRLLG P S R +H NPLHLD+LV+DEASM+DLPMM RL+ ALP AR+I LGDRD Sbjct: 248 LHRLLGVIPNSIRFKHSQENPLHLDLLVLDEASMVDLPMMCRLLAALPAEARLILLGDRD 307 Query: 300 QLASVEAGAVLGDICAYA-NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 QLASVEAG+VLGDIC++ + ++A QL L +E D L LL+KS Sbjct: 308 QLASVEAGSVLGDICSWPGQLDYGPKQADQLFDLCQLP-EVLPISEGTPFADCLALLRKS 366 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 YRF SGIGQLA A+N G+K AV V + ++D+++ L S + Y M+ E + + + Sbjct: 367 YRFDESSGIGQLARAVNLGNKQAVSCVLKAGYSDLQQHNL-SADSYELMISETVNFHAKL 425 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 L + P+ + + YQLLCALREGP+GV GLN+RI Q +Q + I WY Sbjct: 426 LRDIAQGLTPEQSLDYLSNYQLLCALREGPYGVVGLNDRIRQGLQSRGLIKEEG--LWYP 483 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 GRP+MI RND LGLFNGDIGIA G F G ++SV PSRLPEH+T +AMTV Sbjct: 484 GRPIMITRNDQNLGLFNGDIGIAYREPDGRIKVFFEQQGEVRSVLPSRLPEHQTVYAMTV 543 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF AL+LP +P++TREL+YT +TRAR L+L+ + IL+AA +TER Sbjct: 544 HKSQGSEFTRVALLLPPVDSPLMTRELLYTGITRARESLALFTTKGILTAATERKTERAG 603 Query: 599 GLAALF 604 GLA Sbjct: 604 GLALRL 609 >UniRef50_A6W0A8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0A8_MARMS Length = 639 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 270/609 (44%), Positives = 376/609 (61%), Gaps = 20/609 (3%) Query: 7 LLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L + LR +D Q+ +A ++H AV +A AL S G GH+C+ L + N Sbjct: 30 LSDWQARGVLRAIDCQWIEQLAHHAKEDHLAVHIAGALCSAYLGGGHICIDLESIWNRPP 89 Query: 64 SHPLLATCVS-----EIGELQNWEECLLASQAVSRGDE--PTPMILCGDRLYLNRMWCNE 116 L + +I +W L S+ VS + PM+L G RLYL R + E Sbjct: 90 EGIELEELRAVLASCKINNAADWCAVLQDSRLVSSAGKVNERPMVLAGTRLYLYRYFQYE 149 Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPV-SDEINWQKVAAAVALTRRISVISGGPGT 175 + V + A+ A L +LFP S+E++WQKVA A A + SVISGGPGT Sbjct: 150 QQVLNYLKGQFSVAPF--AVDAGLLMQLFPTQSEEVDWQKVAVANAASLPFSVISGGPGT 207 Query: 176 GKTTTVAKLLAALI--QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GKTTTV +LLA L+ +A+G+ RI LAAPTGKAAARLTES+ KA LPL+D+ K I Sbjct: 208 GKTTTVTRLLALLVAQSLAEGKLLRIELAAPTGKAAARLTESISKAKADLPLSDDVKFAI 267 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 PE ASTLHRLLG++ G R +H+ NPLHLDVL++DE SM+DLPMM++LIDA+ + R+I Sbjct: 268 PEQASTLHRLLGSEFGRSRFKHNKDNPLHLDVLLLDEVSMVDLPMMAKLIDAMQPNGRLI 327 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 LGD+DQLASVEAG+VLGD+ F E A +LS+LTG H+ + A ++ +L Sbjct: 328 LLGDKDQLASVEAGSVLGDLSYGIEEVYFQPEWAERLSQLTGEHLAPFGNSSAPAISRAL 387 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 LL+ SYRF ++SGIG LA A+N G+ AV Q ++ D+E R + G+ A + Sbjct: 388 TLLRTSYRFDANSGIGHLAKAMNAGNSQAVLRCLQSNYADVEWRAPEEGQTK-ADIATLA 446 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHP 472 GY Y + ++ + + F+ YQ+L A+R+G FGV +N ++E + Q+ ++ + P Sbjct: 447 KGYDEYWEAVRQNLDIAKLYSVFSRYQILTAVRQGEFGVEKVNAQLEHYFYQRGRV-KDP 505 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNIKSVQPSRLPEHE 531 H WY G+ VM+ RND+ALGLFNGDIG+ + D Q RVWF PDG+ + PSRL E E Sbjct: 506 HV-WYPGKAVMLTRNDAALGLFNGDIGLCMPDEFQRLRVWFMQPDGSFTGLLPSRLSEFE 564 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +AMTVHKSQGSEFD AL+LP +PV+T+EL+YT +TRA++ L+ ++ +A + Sbjct: 565 VVFAMTVHKSQGSEFDQVALLLPMAPSPVLTKELLYTGITRAKKMFILWGSSGLIRSATS 624 Query: 592 TRTERRSGL 600 +R +R SGL Sbjct: 625 SRIQRDSGL 633 >UniRef50_Q1QYD2 DNA helicase/exodeoxyribonuclease V, alpha subunit n=3 Tax=cellular organisms RepID=Q1QYD2_CHRSD Length = 655 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 277/633 (43%), Positives = 365/633 (57%), Gaps = 39/633 (6%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHP---AVTLAAALLSHDAGEGHVCLPLSRL 58 L + L LRPLD FA +A + V LAAAL SH G GHVCL L R Sbjct: 20 SLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAAALASHQLGRGHVCLTLPRA 79 Query: 59 ENNEASHPLLATCVSEIG--------------ELQNWEECLLASQAV-SRGDEPTPMILC 103 L + E W L S V S G TP++L Sbjct: 80 LAAPRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARLAESPLVASPGPGTTPLVLV 139 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS----DEINWQKVAAA 159 G+RLYL R W E+ VA EA LA L +LF + D +WQKVA Sbjct: 140 GERLYLRRYWRAEQAVATHLGARLGRPLPVEASLAAPLARLFSANGASEDAPDWQKVACT 199 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMA-----DGERCRIRLAAPTGKAAARLTE 214 +AL R+++ISGGPGTGKTTTV +LLA L A RI+LAAPTGKAAARL+E Sbjct: 200 LALRNRLTIISGGPGTGKTTTVTRLLALLQTQALAASRGERALRIQLAAPTGKAAARLSE 259 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 S+ A+ L + + +P +A TLHRLLGA+P +++ RHHAG PL LD+LVVDEASM+ Sbjct: 260 SIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRHHAGQPLSLDLLVVDEASMV 319 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA-NAGFTAERARQLSRLT 333 DL +M+ L++ALPD AR+I LGD+DQLASVEAG+VLGD+CA A + G++ LS+L Sbjct: 320 DLELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSPAACEVLSQLA 379 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 T + + L D + +L+KS+RF + SGIG LAAA N GD A + +Q +TDI Sbjct: 380 DTDMTPDPA--CSPLADHVVMLRKSFRFDAHSGIGALAAATNDGDVAAFRQAWQAQYTDI 437 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 + + + + ALAGY + ++ A P ++ N++Q+LCAL+ GP+GV G Sbjct: 438 QWLASSNAQREVE--RAALAGYRDFYRRVRDGASPADVLARLNDFQVLCALKRGPWGVEG 495 Query: 454 LNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG---TRV 510 LN RI + ++ I WY GRPVM+ RND LGL+NGDIGIAL + RV Sbjct: 496 LNARIAAGLWREGWIEDPQG--WYAGRPVMVTRNDPQLGLYNGDIGIALPDAEAGRRLRV 553 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 +FA G +++V PSRL ET +AMTVHKSQGSEF H +LP + P++TRELVYT + Sbjct: 554 FFATA-GGVRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGI 612 Query: 571 TRARRRLSLY-ADERILSAAIATRTERRSGLAA 602 TRAR+RL+L ++ +A+ R R SG A Sbjct: 613 TRARQRLTLAGGGASVVESALTRRVVRDSGFAE 645 >UniRef50_B8FB95 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB95_DESAA Length = 589 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 240/599 (40%), Positives = 345/599 (57%), Gaps = 25/599 (4%) Query: 15 QLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATC 71 + +D QFA + AG P + AAAL+S EGH C+ L+ + + LL+ Sbjct: 3 EFEAIDGQFAAFLQKLAGGSDPVLQSAAALVSLKTREGHTCVELNSGLDQDC---LLSPD 59 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNE--VNH 128 E W + L S V E P+IL RLYL+R + ++ A+ E V Sbjct: 60 CPE--NPAQWIDALANSPVVGAPGEYRPLILDQAGRLYLHRYYEDQALTAKKILEWSVPD 117 Query: 129 AIEVDEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLA 186 D+ LAQ LD+LF + E +WQK AAA A+ R+ SVISGGPGTGKTT A+++ Sbjct: 118 PAYTDQDRLAQELDRLFTPLPNSETDWQKAAAATAVLRKFSVISGGPGTGKTTIAARIIR 177 Query: 187 ALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 L+ +ADG I + APTGKAAARL ESLGK L +L + + IP+ A T+HRL+GA Sbjct: 178 LLLSLADGRAPSIAITAPTGKAAARLLESLGKELSRLGVPPGMEDAIPKRAKTIHRLMGA 237 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 + S + H+A NP++ D+L+VDEASM++L +M+RL++ALPDH ++I LGD+DQLASV Sbjct: 238 RFNSSQFIHNADNPINADILIVDEASMVELSLMARLLEALPDHGKLILLGDKDQLASVGP 297 Query: 307 GAVLGDICAYANA-GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 G+V+GDIC+ + F+ E AR L++ G +P+ G A + D + L K+YRF DS Sbjct: 298 GSVMGDICSGPGSQAFSPEWARVLAKAAGQAIPSENGL--APIADGIVHLVKNYRFAKDS 355 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 GIG+LA + RGD + +I + + A+LEE L +L + A+ Sbjct: 356 GIGELADCVVRGDAAGAAASLESGG-EIIYEPVNNPRTLPALLEEPLR--EGFLPFITAK 412 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA 485 P ++AF +++LC +R+GP+G+ N +E + I + WYE RPV++ Sbjct: 413 -NPAQALEAFGGFRVLCGVRQGPWGMNSANSLVEDIFARDGLILLRNY-PWYEKRPVVVN 470 Query: 486 RNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 RND+ + LFNGD G+ +D + F ++ S LP H+T +AMTVHKSQGSE Sbjct: 471 RNDAEMNLFNGDHGVYMD----GKAAFPGLQEELRHYARSMLPAHDTAFAMTVHKSQGSE 526 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 F+ LILP + +PV+TREL+YTAVTR R RL + + A+ + T R SGL Sbjct: 527 FESVLLILPGENSPVLTRELLYTAVTRTRSRLRIVGAMPSIKKAVLSPTRRPSGLQDAL 585 >UniRef50_A1S6V1 Exodeoxyribonuclease V n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6V1_SHEAM Length = 631 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 268/629 (42%), Positives = 361/629 (57%), Gaps = 40/629 (6%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 L+ QL +L LD FAL +A D+ P + L L+S H CL LS L Sbjct: 13 ALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQLSRQHPCLDLSAL 72 Query: 59 E------NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRM 112 +A +LA + +G + N + AV DE P+IL G RLYL R Sbjct: 73 MLGNPMGTRQAQLRILADYPALLGAVANLD-------AVGSPDENKPLILEGKRLYLKRY 125 Query: 113 WCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISG 171 E VA N + A A L+ LFPV E I+WQK+A A A ++++VI+G Sbjct: 126 QGFESRVAARLNAMAGTELSTHAHTAALLEALFPVGKEAIDWQKIAVATAAGKQLTVITG 185 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP------- 224 GPGT + L+ ++ IR+ APTGKAAARL+ES+ + ++L Sbjct: 186 GPGT---GKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNSPL 242 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 ++ + +PEDASTLHRLLG QPG+ + RHH NPL LD+L+VDEASM+DLPMM RL+D Sbjct: 243 ISQDAIASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRLLD 302 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE--RARQLSRLTGTHVPAGTG 342 ALP HAR+I LGD+DQLASVEAGAVL DIC A G+ + ++ LTGT + Sbjct: 303 ALPGHARLILLGDQDQLASVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKL--APR 360 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 +A L D+LC L S+RF D+GIGQLA A+N GDK V V+Q+++ ++ + + Sbjct: 361 ADAPGLGDNLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKVAAVWQKNYAELSWIPGDNSD 420 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 A+++ A + Y YL ++ +AEP I+Q +NE+++LCA++ G +GV G+N I + Sbjct: 421 GLAALVQLAKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAAL 480 Query: 463 QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWFAMPDGNI 519 + I P +Y GRPVMI ND +LGLFNGDIGI L Q F DG + Sbjct: 481 ARAGLIE--PSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQV 538 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP----VVTRELVYTAVTRARR 575 V P+RLP HET +AMTVHKSQGSEF AL LP Q TP ++ REL+YTA+TRA+ Sbjct: 539 LKVLPARLPGHETCYAMTVHKSQGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKS 598 Query: 576 RLSLYADERILSAAIATRTERRSGLAALF 604 + + E + AA RTER SGLA Sbjct: 599 KFTCLGTEALFEAATQRRTERASGLADRL 627 >UniRef50_A4VRQ4 Exodeoxyribonuclease V alpha chain n=2 Tax=Proteobacteria RepID=A4VRQ4_PSEU5 Length = 616 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 271/592 (45%), Positives = 360/592 (60%), Gaps = 20/592 (3%) Query: 18 PLDVQFA---LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSE 74 PL+ F + AV LAA L G VCLPL RL Sbjct: 10 PLERAFVASLQRLEPQAPEAVLLAATLCCEALAAGDVCLPLERLAGRRP----WPDVDLS 65 Query: 75 IGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA-RFFNEVNHAIEVD 133 + L W L AS V D+ P+ L GDRLYL R E+ +A + A EVD Sbjct: 66 MPALPVWRAQLEASTLVGTPDDYAPLTLVGDRLYLARYQAYEQQLAEQLLARTGDAPEVD 125 Query: 134 EALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 EA LA++L +LF + + +WQ++AAA A+ RR++VISGGPGTGKTTTV +LLAAL++ Sbjct: 126 EARLAESLARLFAFNQQRPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLAALLEQP 185 Query: 193 DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 GER I LAAPTGKAAAR+ E++ A +LP++D K+ +P++A TLHRLLG++ S R Sbjct: 186 GGERLAIGLAAPTGKAAARMAEAIRNAKAELPVSDAVKEALPDEARTLHRLLGSRGDSPR 245 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 +RH A NPL LDVLVVDEASM+DL +M++L+ ALP AR+I LGD+DQLA+VEAGAV + Sbjct: 246 VRHDAANPLALDVLVVDEASMVDLALMAKLVAALPPKARLILLGDKDQLAAVEAGAVFAE 305 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 +C GF A A +L R+TG VP T + L D++ LL S+RF DSGIG+LA Sbjct: 306 LCE--GRGFDAGAASELERITGQPVP--VETPRSRLGDAVVLLTHSHRFAGDSGIGELAR 361 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 IN GD + Q+ D+ S I LE+ GYG YL + +P Sbjct: 362 RINAGDAKGTVALLQEGRADLAWNATPSPTALIERLEQ---GYGGYLQAARQG-DPGAAF 417 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 +AFN ++ L A REGPFGV G+NE +E +++ + RWY GR VM+ +ND ALG Sbjct: 418 EAFNGFRALTAQREGPFGVTGINEALETRFRRRLGVPARE--RWYPGRAVMVRQNDYALG 475 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 LFNGD+G+ L QG RV+F DG + P+RLP H++ +AMTVHKSQGSEF L Sbjct: 476 LFNGDVGLCLKTEQGLRVFFEGDDG-YRGFAPARLPSHDSAFAMTVHKSQGSEFAEVLLA 534 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 LP Q +P++TR L YT +TRA+RR+ ++A L+ A++TR ER +GLA Sbjct: 535 LPDQPSPLLTRALFYTGITRAKRRVEIWALPARLAEAVSTRAERAAGLAERL 586 >UniRef50_A0KQ57 Exodeoxyribonuclease V, alpha subunit n=10 Tax=Gammaproteobacteria RepID=A0KQ57_AERHH Length = 684 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 304/684 (44%), Positives = 391/684 (57%), Gaps = 85/684 (12%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAG-DEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 + ++L ++R LD+QFA VA P + L AAL + G GHVCLPL L ++ Sbjct: 6 MIERLKALALAGRIRQLDLQFARLVADLGGSPELVLGAALACFELGRGHVCLPLEMLTHS 65 Query: 62 EASHPLLA----------TCVSEIGELQNWEECLLASQAVSRGDEPT-----PMILCGDR 106 L ++++ + W S V + P+ L R Sbjct: 66 GNEKGSLRPFGLDPDQSRDLLADLADPARWPALFAESPLVGSEQDEGLAPRWPLRLWHGR 125 Query: 107 LY------------------------------LNRMWCNERTV--ARFFNEVNHA----- 129 LY L+R++ + + A Sbjct: 126 LYLTRYHDFELGVARHLRALSERAEWPEIAPALSRLFARDYGLVFAALLKARLAPDFSAR 185 Query: 130 ------------IEVD----EALLAQ--------TLDKLFPVSDEINWQKVAAAVALTRR 165 EVD E LLA LD L P + N QK+AAA A R Sbjct: 186 HFTLKYLDLVFPNEVDWLAIEGLLASAQAASDLSKLDALVPEALCCNGQKLAAATAAARP 245 Query: 166 ISVISGGPGTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 +VISGGPGTGKTTTVAKLLA L++ + G+ IRL APTGKAAARLTES+G AL+ L Sbjct: 246 FAVISGGPGTGKTTTVAKLLAILVETGLQAGKAPAIRLVAPTGKAAARLTESIGSALQAL 305 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 L E + IP +A TLHRLLG PG + RHHAGNPLHLD+LVVDEASM+DLPMM+RL+ Sbjct: 306 DLPPEWVEAIPTEAGTLHRLLGVIPGRSQFRHHAGNPLHLDLLVVDEASMVDLPMMARLL 365 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 DALP HAR+I LGD+DQLASVEAGAVLGDIC++ G + +A LSR TG + Sbjct: 366 DALPSHARLILLGDKDQLASVEAGAVLGDICSFIEQGISPAQADWLSRQTGYRLQGSPA- 424 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 A++RDSLCLL KS+RF SGIGQLA A N GD TAV++V+ F DI +GE Sbjct: 425 -GATVRDSLCLLAKSWRFDQHSGIGQLARACNSGDATAVESVWGAGFADISLHPW-AGEA 482 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 Y A++ + +AGYG YL +A P + +AFN +Q+LCALR+GPFGV GLNER+E + Sbjct: 483 YDALIAQGVAGYGSYLKAARAGEAPAAVFKAFNSFQILCALRDGPFGVLGLNERLELALS 542 Query: 464 QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSV 522 + I WY GRPVM+ RND +GL+NGD+G+ L G +VWF PDG ++++ Sbjct: 543 RAGLI--ACDGDWYAGRPVMVVRNDHGVGLYNGDMGLCLPDETGRLKVWFEQPDGTLRAL 600 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 PSRLP HET +AMT+HKSQGSEF H L+LP +P++TRELVYT +TRA+ RL LY D Sbjct: 601 LPSRLPPHETVYAMTIHKSQGSEFAHTVLVLPDSPSPLLTRELVYTGITRAKARLDLYGD 660 Query: 583 ERILSAAIATRTERRSGLAALFSS 606 +L+ A+ +TER SGLA Sbjct: 661 RALLAQAVRKKTERYSGLAERLGE 684 >UniRef50_A8ZX10 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX10_DESOH Length = 609 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 225/605 (37%), Positives = 321/605 (53%), Gaps = 26/605 (4%) Query: 18 PLDVQFALTVAGDEHP---AVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSE 74 LD +F + + + LAAAL GHVC L N + Sbjct: 16 ELDRRFGELLTALDPGGGKELFLAAALTLWHTRRGHVCFDL----NRADAFLTDGLDGVS 71 Query: 75 IGELQNWEECLLASQAVSR-GDEPTPMILCGD-RLYLNRMWCNERTVARFFNEVNHAI-E 131 + + + W + L S V+R G +P P++L G+ RLYL+R W + +A F I + Sbjct: 72 LPDGRQWADILSRSAVVARPGGDPAPLVLDGEGRLYLHRYWAYQEQLADFIRSRAGIIRK 131 Query: 132 VDEALLAQTLDKLFP---VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 VD L + L + FP + + Q+VAA ALT SVI+GGPGTGKT T A++LA L Sbjct: 132 VDAHRLKEGLTRWFPGQGPGNGPDMQRVAAVSALTHDFSVITGGPGTGKTLTAARILALL 191 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 + A+ L APTGKAAARL E++ LR + R+ A T+HRLLGA P Sbjct: 192 AEQAENRPLAAVLTAPTGKAAARLGEAMS-TLRGAVPGPASENRLEVRACTIHRLLGALP 250 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 G+ RHH NP+ DV+VVDEASM D+ +M++++DALPDH R+I +GD+DQLASV AG+ Sbjct: 251 GTTVFRHHRHNPIAADVVVVDEASMADVALMAKMVDALPDHCRLILVGDKDQLASVAAGS 310 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGT----GTEAASLRDSLCLLQKSYRFGSD 364 V DIC A G A L L V G A L ++ L+ YRF Sbjct: 311 VFADICGAA--GRNRFSADFLQALEAAGVLTGGMKAFPAGTARLAGNVVHLETVYRFEHR 368 Query: 365 SGIGQLAAAINRGDK-TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 G+ ++ + G V+ + D+ E++ L + + + D L Sbjct: 369 GGMEMVSRLVREGAAGEIVEALATPGHQDVTWTAPDQ-EEWRERLARTVTAWVK--DCLS 425 Query: 424 ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 A P++++ +++LCALREGP G LN +E +Q+ + WY GRPVM Sbjct: 426 VSANPEMVLDRLGSFRVLCALREGPAGALALNRSVEHSLQRAGVV--ASGRLWYAGRPVM 483 Query: 484 IARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 + +ND +L LFNGD+GI L G V+F G ++ P R+PEHET +AMTVHK QG Sbjct: 484 VLKNDYSLELFNGDVGITLWDGDRLSVFFKDDRGGVRKFHPGRIPEHETVYAMTVHKGQG 543 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAAL 603 SEF+ ++P + PV+TRELVYTA+TRAR + + + I+ AA++ RRSGL Sbjct: 544 SEFEKVVFVMPDRDGPVLTRELVYTALTRARSHIEIIGKKDIIEAAVSRSVSRRSGLVEA 603 Query: 604 FSSRE 608 ++ + Sbjct: 604 INNDQ 608 >UniRef50_Q1LST7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LST7_BAUCH Length = 619 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 246/618 (39%), Positives = 367/618 (59%), Gaps = 20/618 (3%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHP--AVTLAAALLSHDAGEGHVCLPLSRLEN 60 ++ +L+A + RPLD+ FA + H A+ LA+A LS D G GHVCLPLS L Sbjct: 1 MENIILQAQKLGLWRPLDIHFAHLMVALSHSTDALFLASACLSADVGMGHVCLPLSLLTP 60 Query: 61 N---EASHPLLATCVSEIG---ELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWC 114 + E HP LA + +L +W+ LL S +VS G TP++L +LYL+R+W Sbjct: 61 DTLFEGLHPKLAQQAWQQAGSLQLNDWQNLLLTSPSVSDGSRSTPLVLDKQQLYLHRLWQ 120 Query: 115 NERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGP 173 +E TVA FF + + DE ++ L+ LFP ++ INWQK+A A+ALT ++S+IS Sbjct: 121 DECTVAHFFQR-SMLVPYDENIVRNILNALFPTTNNSINWQKIAIALALTSKVSLISYRT 179 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 K T + KLLAA++Q+ E I +AAPT K A+LT+ + +++ L D + +I Sbjct: 180 SNDKNTMITKLLAAILQINKSEYLHIIIAAPTSKVTAQLTDYIARSMMILT-HDYLRYKI 238 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 L++LLG QP S+R++++ NPL+LD+L++DE+S++DLPMM+ LI+ALP ARVI Sbjct: 239 TYQVINLYKLLGTQPNSRRIQYYCDNPLYLDILILDESSIVDLPMMANLINALPAQARVI 298 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE--AASLRDS 351 FLG+ DQ SV+ G V DI + G++ +R ++LSRLTG + + + DS Sbjct: 299 FLGNDDQFISVDTGTVFSDIFQLIDHGYSIKRCQELSRLTGYQLSNNRTNNMFSYQVTDS 358 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKT-AVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 LCLLQ + SGI LA IN G+ A+ + + DI DY M+ + Sbjct: 359 LCLLQNNNSLKDSSGISILANMINTGNNNDALILLNSSKYADIYYIQRHCELDYQRMVHD 418 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 + Y YL LL A P II+ FN Y+LL LR+G FGV LN IEQ + + + Sbjct: 419 CVTNYSNYLQLLNAGESPASIIEEFNRYRLLSMLRKGKFGVVCLNXCIEQTLIYYGLLKK 478 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV--WFAMPDGNIKSVQPSRLP 528 + + Y G+P+++ + +LGL+NGDIG+ L + ++ +F +P+ +IK V S LP Sbjct: 479 NSST--YAGQPIILLHDIQSLGLYNGDIGLILSESKNNKLHAYFILPNNSIKVVATSYLP 536 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQR-TPVVTRELVYTAVTRARRRLSLYA-DERIL 586 ++ T +A+TV++SQ +F HAAL+LP + +P+ TREL+Y VT+AR+ LS+YA D IL Sbjct: 537 KYATAFAITVYQSQELKFTHAALVLPDEICSPIFTRELLYAGVTKARKFLSIYAPDNEIL 596 Query: 587 SAAIATRTERRSGLAALF 604 + I T+RRSGL Sbjct: 597 ADIITHPTQRRSGLTDRL 614 >UniRef50_C0QI06 RecD2 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI06_DESAH Length = 665 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 273/649 (42%), Positives = 358/649 (55%), Gaps = 53/649 (8%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLSRLE 59 + + + LRPLD F + + E A V L AAL+SH GH+CL L L Sbjct: 22 VLQLVETWTTLGWLRPLDRAFVVFLHHQEKDAGFLVLLGAALVSHQLARGHICLDLGPLL 81 Query: 60 NN------------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 + A L + + WE+ L S V TP+ L RL Sbjct: 82 ADPDGVLALPPEGMTAKETLTPSRLLSGVTQDLWEQHLDCSPLVGGDTGNTPLALVSGRL 141 Query: 108 YLNRMWCNERTVARFFNEV-NHAIEVDEALLAQTLDKLFPV--------SDEINWQKVAA 158 YL R W R VA + I+V L Q LD +F EI+WQ VAA Sbjct: 142 YLRRYWDCTRQVAEQIKRLSAKKIDVPHDL-EQRLDGIFGAMRTPEENEKTEIHWQSVAA 200 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESL 216 A+A T +S+ISGGPGTGKTTTV +LL L +A G RI LAAPTGKAAARLTES+ Sbjct: 201 AIAATNALSIISGGPGTGKTTTVVQLLGILQTLAMEAGRGLRISLAAPTGKAAARLTESI 260 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 KA+ +L L ++++P+ STLHRLLG++P S+ H NPLH+D+LVVDEASMIDL Sbjct: 261 AKAVDRLSLP--VQEKMPKSVSTLHRLLGSRPDSRNFIHDQNNPLHVDLLVVDEASMIDL 318 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY-ANAGFTAERARQLSRLTGT 335 MM+ L+ A+P AR+I LGD+DQLASVEAG+VLGD+C A A F L + TG Sbjct: 319 EMMNALLQAIPPGARLILLGDKDQLASVEAGSVLGDLCESPATACFLPATVAFLQQATGF 378 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK 395 + +G + + +L+KS+RFG SGIG LA A+N+GDK V V++Q F+DI + Sbjct: 379 DLSEFSG-PGREIDQQIVVLRKSHRFGEHSGIGALAGAVNQGDKNGVAEVWRQGFSDIFQ 437 Query: 396 RLLQSGEDYIAML-----------EEALAGYGRYLDLLQARAEP--------DLIIQAFN 436 + + D +E GY +L+ L ++ FN Sbjct: 438 VRVPTCHDNRFHRLVLDGHSTTTGKEGPQGYRVFLETLSQGPGAFGSETDWLKAVLHGFN 497 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 ++Q+L LR G +GV LN I + + I WY GRPV++ RND +LGL NG Sbjct: 498 QFQVLTPLRRGEWGVEALNLAIADVLYRSDLID--ATQGWYPGRPVLVTRNDYSLGLMNG 555 Query: 497 DIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 D+GI +G RV F M DG++K + PSRL ET +AMTVHKSQGSEFDH A++LP Sbjct: 556 DMGIVAPTTRGMRVVFPMGDGSLKLLLPSRLSNVETVYAMTVHKSQGSEFDHTAMVLPGT 615 Query: 557 RTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGLAALF 604 TPV+TRELVYT +TRAR +L IL+AA+ RT+R SGL L Sbjct: 616 VTPVITRELVYTGITRARSWFTLVCPHEVILAAAVEQRTQRASGLGELI 664 >UniRef50_B5EPU7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU7_ACIF5 Length = 650 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 247/644 (38%), Positives = 335/644 (52%), Gaps = 49/644 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLS---HDAGEGHVCLPLSR-- 57 + QL LRPLD+ FA + + A L + GEGH C+ L Sbjct: 9 MIDQLRAWTSAGWLRPLDLAFAQFLIRLDPQAPALLPLAGALLARLEGEGHTCIALEDFL 68 Query: 58 ------LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP---------TPMIL 102 L+ H +LAT + + W E L S+ V + TP++L Sbjct: 69 GAPERFLDWPAPGHAMLATALGDWPHAAQWTETLARSRCVQVTERNAPVPANGAETPLVL 128 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEA---LLAQTLDKLFPVSDE----INWQK 155 RLYL R W +++ +A + D A L L++LFP SDE + WQK Sbjct: 129 SAARLYLRRYWRDQQFIAEALRQRAQQRVADAANPEALRPWLEQLFPASDEPGDALPWQK 188 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 +A A+AL S+I+GGPGTGKT T A+ +A L+ + RI LAAPTGKAA R+ ES Sbjct: 189 IACALALRSHFSIITGGPGTGKTYTAARFMALLMATSSTP-LRIVLAAPTGKAAVRIDES 247 Query: 216 LGKALRQLPLTDEQKKRIPE-----DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 L A+ LP + A TLH LLGA+P S+R RH A NPL LDVLVVDE Sbjct: 248 LQSAVGTLPQLSQIPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLELDVLVVDE 307 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 ASMI MM+ L+ ALP AR+I LGD+DQLASVEAGAVL ++ + + + AE + Sbjct: 308 ASMIHQEMMAALLRALPPAARLILLGDQDQLASVEAGAVLAEL-SLGSGKYDAETCHYMQ 366 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 G P + L ++ LQ+S+RF ++ IG LA A++ G + Q Sbjct: 367 ASCGAA-PRPGDNGPSPLAANIIRLQRSHRFNAE--IGALADAVHGGHPETAVRILQTAH 423 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL---------QARAEPDLIIQAFNEYQLL 441 T I L + YGR Q A I+ + +++L Sbjct: 424 TGTLAWQPAPAIHRILELARPESAYGRVWQAAGQPPPKDRQQHSAWVKTILNDYAGFRIL 483 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CALR+GP+GV G+N IE ++Q++ + WY GRP ++ RND LGL NGDIGIA Sbjct: 484 CALRQGPWGVTGINRAIEDYLQRQGILQSRG--LWYAGRPTLVTRNDPNLGLSNGDIGIA 541 Query: 502 L-DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L D + RV+F + +++ PSRL E+ WAMTVHK+QGSEF H LILP + +PV Sbjct: 542 LPDPDKRLRVYFPNSEEAPRAILPSRLNHTESAWAMTVHKAQGSEFAHTVLILPPEDSPV 601 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 ++REL+YTA+TRAR+ +L A L AI +T R SGL A Sbjct: 602 LSRELLYTAITRARKCFTLIAPRERLENAIQRQTRRMSGLHAAL 645 >UniRef50_A1TWJ9 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Marinobacter RepID=A1TWJ9_MARAV Length = 750 Score = 528 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 266/707 (37%), Positives = 371/707 (52%), Gaps = 106/707 (14%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTV-------AGDEHPAVTLAAALLSHDAGEGHVCLPLS 56 + L + + +RPLD FA + P V L AAL SH G GHVC+ L+ Sbjct: 45 EALLGQWQQAGWIRPLDTGFARLIRELSEEQGDSPQPLVLLLAALTSHQVGRGHVCIDLA 104 Query: 57 RLENNEASHPLLATCVSEIGELQNWE----------------------ECLLASQAVSRG 94 L + L L E L S AVS G Sbjct: 105 TLLADAGQTLALPPEEPANTGLSESEVANLQGRYPQELLSRVQLTDCLAALQGSLAVSDG 164 Query: 95 DEPTPMILCGDRLYLNRMWCNERTVARFFNE-------VNHAIEVDEALLAQTLDKLFPV 147 P P++L G RLYL R W E+ +A + + L+ L KLF Sbjct: 165 SVPAPLVLNGTRLYLRRFWRYEQRIAEGIQQRLALPSPLADPQSAASQTLSTALSKLFRS 224 Query: 148 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRL 201 + +++QK+A A+A R +VI+GGPGTGKTTTV LLAAL +A G + RIRL Sbjct: 225 TAPVDYQKLACALAARNRFAVITGGPGTGKTTTVVNLLAALQAVAGESPERAGRKYRIRL 284 Query: 202 AAPTGKAAARLTESLGKALRQLPLTD----EQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 AAPTGKAAARL ES+G A+ +LPL D + + IP +TLHRLLG++P +++ RHH Sbjct: 285 AAPTGKAAARLNESIGGAVSKLPLADLPGSVKLEDIPTKVTTLHRLLGSRPDTRQFRHHR 344 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL +D+LV+DEASM+D+ +M+ + DALP A++I LGD+DQLASV+AGAVLG++C A Sbjct: 345 DNPLLVDILVIDEASMVDVDLMASVFDALPASAQLILLGDKDQLASVDAGAVLGELCQRA 404 Query: 318 -NAGFTAERARQLSRLTGTHVPAG-TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 +A +T + AR L+ +TG VP L ++ +L+KSYRFG DSGI QLA ++N Sbjct: 405 LDAHYTPDTARWLAAITGAQVPDSLVDNSGQPLDQAVAMLRKSYRFGQDSGIRQLAESVN 464 Query: 376 RGDKTA--VKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL--------------------- 412 + T+ + + F D+ Q+ + E + Sbjct: 465 SSELTSQVLGQIRDAGFDDVIWLNGQTPKPDPDQTLELICHHAITGSPEAFRNAGLGRVV 524 Query: 413 --------AGYGRYLDLL------------QARAEPDLIIQAFNEYQLLCALREGPFGVA 452 GY YL+++ A +++AFN++Q+LCALR+GP+GV Sbjct: 525 NGEVLPTPVGYRHYLEVIHSCDLTAGSPRAAWDAHAAEVLEAFNDFQVLCALRKGPWGVE 584 Query: 453 GLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---------- 502 GLN+RI Q + ++ I + WY GRPV++ ND LGL NGDIGI Sbjct: 585 GLNQRIAQQLLAEKLIDKTEG--WYAGRPVLVTGNDYNLGLMNGDIGITFNVPWDRAANG 642 Query: 503 DRGQGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 + Q RV F D G I+ + PSRL + ET +AMTVHKSQGSEF+H L+LP + +PV Sbjct: 643 EPKQTLRVAFPSGDSTGGIRWISPSRLQQLETVYAMTVHKSQGSEFNHTCLVLPDRLSPV 702 Query: 561 VTRELVYTAVTRARRRLSLY-ADERILSAAIATRTERRSGLAALFSS 606 +T+ELVYT +TRA+ SL D ++ ++ + R SGLA Sbjct: 703 LTKELVYTGITRAKDWFSLITGDAQVFKDSVGQQVVRASGLALRLGE 749 >UniRef50_Q5QUQ9 ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QUQ9_IDILO Length = 647 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 234/643 (36%), Positives = 324/643 (50%), Gaps = 72/643 (11%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTV--AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 L L E + +R +D+ F + AG+ V LAA SH+AG GH C+ + L+N Sbjct: 9 LFDALREWRDAGWIRSIDLAFVEFLQQAGETRSEVLLAALCASHEAGRGHTCIDIKALQN 68 Query: 61 NEASHPLLAT-------CVSEIGELQNW----EECLLASQAVS-RGDEPTPMILCGDRLY 108 S L CV+ + + E L+ S V G P++L +LY Sbjct: 69 EPESVLNLPPENRYSPNCVNPSELFRQFGTDVEAALIQSHCVDVDGKGNQPLVLSDGKLY 128 Query: 109 LNRMWCNERTVARFFN-EVNHAIEVDEALLAQTLDKLFPVSD-----EINWQKVAAAVAL 162 L R W E + ++ ++ LL TL KLF D EINWQ+VA A + Sbjct: 129 LRRYWQYEAFIENDLQARMSDRPVTNDDLLKSTLAKLFDKPDGDKAEEINWQRVACANTV 188 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGKA 219 R SVI+GGPGTGKT TV +LL AL R+ LAAPTGKAAARLTES+ Sbjct: 189 RNRFSVITGGPGTGKTYTVVRLLTALQHQTLFLGLPPLRVSLAAPTGKAAARLTESIESE 248 Query: 220 LRQL------PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 L +L + I + TLHRLLG +P S+ +HHA NPL DV++VDEASM Sbjct: 249 LNRLRGDAKLATLKDALDAIKPEGKTLHRLLGVKPNSRAFKHHADNPLRTDVVIVDEASM 308 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRL 332 ID+ MM+ L+ A P +AR++ +GD+DQLASVEAGAVLG++C A+ G + E A+ L + Sbjct: 309 IDIEMMTALLKATPKNARLVLIGDKDQLASVEAGAVLGNLCEGADQGHYHTETAQWLQHV 368 Query: 333 TGTHVPAGT--GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 T V + +KSYRF I LA AINR D A K ++ Sbjct: 369 ADTPVLPAELIDNNGEQRLQHVVKFRKSYRF--HGPIADLANAINRQDNAATKQELEKAK 426 Query: 391 TDIEKRLLQ-------SGEDYIAMLEEALAGYGRYLDLLQARAE---------------- 427 E + + A+++ L G ++ A+ Sbjct: 427 VADEDYPVSLYEVSSLDDPAFEALVKRNLTTSGSLTLHVRNNADTNSNVTKTANAEDINK 486 Query: 428 -PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIAR 486 +Q + +Q+L ALREGP+GV +N+++ +I + WYEGRPVM+ + Sbjct: 487 LAQEALQNLSNFQILTALREGPWGVKAVNQKV-------GEILGVNANTWYEGRPVMVTK 539 Query: 487 NDSALGLFNGDIGIALDRGQGTRVWFAMPD-------GNIKSVQPSRLPEHETTWAMTVH 539 ND L L NGDIG+ + + A PD ++ V PSRL ET +AMTVH Sbjct: 540 NDYGLKLNNGDIGLTFKDPEHGHLRVAFPDQTNKSENKGVRWVLPSRLTHIETVYAMTVH 599 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 KSQGSEF H ++LP +PV+++EL+YT +TRA+ RLSL Sbjct: 600 KSQGSEFKHTVMVLPDHDSPVLSKELLYTGITRAKERLSLVGS 642 >UniRef50_A3YGD9 Exodeoxyribonuclease V alpha chain n=1 Tax=Marinomonas sp. MED121 RepID=A3YGD9_9GAMM Length = 668 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 261/643 (40%), Positives = 357/643 (55%), Gaps = 48/643 (7%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLENN 61 +++ +R LD+ L +AG H V LAA + S G+GH CLPL RL ++ Sbjct: 28 EKIAHWPSLGLIRQLDLHTCLRLAGHCHEQRSEVLLAALVTSFYLGQGHSCLPLKRLFDS 87 Query: 62 EASHPLLATCVSEIGELQNWE-----ECLLASQAVSRGDE-----------PTPMILCGD 105 ++ + S + L + L AS V + P +L G+ Sbjct: 88 PFANVTQSQWQSALHSLDVFSLDQLMCALKASPLVQLVESKPLIPKHVTTLSKPFVLDGE 147 Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD----EINWQKVAAAVA 161 RLYL R + E V + + A L +LFP + E +WQK+A A A Sbjct: 148 RLYLARYYAFETQVIEYIQKAQSHASY--AFDGAWLTQLFPSGETALNEFDWQKIAVANA 205 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADG--ERCRIRLAAPTGKAAARLTESLGKA 219 + SVISGGPGTGKTTTV KLL L + A + I LAAPTGKAAARLT+S+ +A Sbjct: 206 ALQSFSVISGGPGTGKTTTVTKLLVLLARQAQALSQGLTIELAAPTGKAAARLTQSIIQA 265 Query: 220 LRQL----PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 +L D IPE ASTLHRLLG++ G +H+A NPLHLDVL+VDEASM+D Sbjct: 266 KDKLRKSTDFNDAVFDLIPEQASTLHRLLGSEYGRSGFKHNAKNPLHLDVLLVDEASMVD 325 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA-GFTAERARQLSRLTG 334 LPMM++L+ ALP +AR+I LGD+DQLASVEAG+VL D+ F+ A++L +LT Sbjct: 326 LPMMAKLLAALPPNARLILLGDKDQLASVEAGSVLADLTYGIEPIQFSETWAKRLGQLTQ 385 Query: 335 ---THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD-- 389 T + A S+R SL LL KSYRF +SGIG LA+A+N GD ++ Q Sbjct: 386 TDFTDLIQHDENHAVSIRQSLSLLVKSYRFDQNSGIGHLASAVNLGDAAQSLSILNQSGD 445 Query: 390 -FTDIEKRLLQSGEDYIAMLEEALAGYGRYL----DLLQARAEPDLIIQAFNEYQLLCAL 444 + D+ + L E + + GY +Y +L A + Q F+ YQ+LCA+ Sbjct: 446 QYPDLAWQKLDQVEKGLD-IAALAKGYDKYWLGVKGVLHDGASIQSLFQLFSNYQILCAV 504 Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR 504 R G +GV LN ++++ ++ ++ WY G+ ++I RND+ LGLFNGDIGI L Sbjct: 505 RSGDYGVESLNHQLQEHFYKRGRMLNPQG--WYAGKAIIITRNDANLGLFNGDIGICLPD 562 Query: 505 GQGT---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 Q RVWF +PDG+ K+ PSRL E+E + MTVHKSQGSEF H L+LP +PV+ Sbjct: 563 EQDKERMRVWFELPDGSFKAYLPSRLSENEAVFVMTVHKSQGSEFQHVELVLPPYESPVM 622 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 T+EL+YT +TRA+ SL+A ++ I TR R SGL Sbjct: 623 TKELIYTGITRAKSHFSLWASVDVIKTGIQTRVARHSGLIDKL 665 >UniRef50_A4B916 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B916_9GAMM Length = 583 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 216/598 (36%), Positives = 302/598 (50%), Gaps = 31/598 (5%) Query: 16 LRPLDVQFALTVAGDEHPAVTLA---AALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 PLD A + H L AAL S +GH CL + Sbjct: 8 FHPLDSALADRICQWHHSDDELLWHTAALTSFALQQGHTCLWPEQALTEAPYSTYAELGG 67 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE-VNHAIE 131 + + W L A D +P+IL +RLYL R W E +ARF A+ Sbjct: 68 IALPSAETWLAHLAAFDL--TPDSESPLILENERLYLRRYWQFETEIARFLKRSTTGALP 125 Query: 132 VDEALLA---QTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 + EA + LD+ FP+ D NWQ+ AA L VI GGPGTGKT TV ++LA Sbjct: 126 LTEAQVRDVRNKLDQYFPLEDNRFNWQRCAAVNCLLDPTHVIIGGPGTGKTYTVTRILAL 185 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 L ++D IRLAAPTGKAA RL E++ A R+L L IP+ A TLHRLLG Sbjct: 186 LSAVSDTPPI-IRLAAPTGKAAGRLAEAINDAKRELNLDLIDAGAIPDSAQTLHRLLGVI 244 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 P + RHH +P+ D+L++DE SM+DLPMM+RL A+ H RVI LGD DQL SV AG Sbjct: 245 PNQLQFRHHQEHPIEADILLIDEVSMVDLPMMARLTRAIAPHTRVILLGDADQLPSVAAG 304 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 +VL D+ + G++ R QL+ L P T + RD + L+ S RF SGI Sbjct: 305 SVLADMVDKPHTGYSQARVSQLANLD----PKQTLNSQPNARDFVTELKYSRRFSDTSGI 360 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 GQLA ++ GD + VF Q + D++ I + ++ L+ + + Sbjct: 361 GQLAKSVIAGDASQTVRVFSQ-YEDVQWVRDIDPSRLIHQWVD------QHYALIAQQED 413 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 ++ LCA REG G +NERI + ++R ++ G+P+M+ +N Sbjct: 414 LVKAFAQLKTFRALCATREGDQGTVHINERIVSLLNRQR-------QTFFHGQPIMVTQN 466 Query: 488 DSALGLFNGDIGIALDRGQGTRV-WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 L LFNGDIG+ G + WF DG+ + V RLP ET +AMT+HK+QGSEF Sbjct: 467 HYGLKLFNGDIGLVWPDEHGQLLAWFEQEDGH-RPVALGRLPGVETVYAMTIHKTQGSEF 525 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +H AL+LP + ++TREL+YT +TRA+ R +++ + + R +GL Sbjct: 526 NHVALVLPDREHALITRELLYTGITRAKERCDVFSPSETWNRGVDRAVTRWAGLGLKL 583 >UniRef50_B3ECZ3 Exodeoxyribonuclease V, alpha subunit n=7 Tax=Chlorobiaceae RepID=B3ECZ3_CHLL2 Length = 588 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 236/603 (39%), Positives = 340/603 (56%), Gaps = 39/603 (6%) Query: 17 RPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 R +D Q A + DE + +LLS G+G+VCL L + P + Sbjct: 8 RSIDRQIAEYLCRSINDETGVMRTVVSLLSQAVGQGNVCLDLEEVAGEVVRIPGREEPL- 66 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTVARFF--NEVNHAI 130 + +++ L + V R E P+IL RLYL R + + T+A Sbjct: 67 RLPDIERLVSALRSLHTVGRPGEHRPLILDEAGRLYLYRYFRYQETLAEAILARAATETG 126 Query: 131 EVDEALLAQTLDKLF-PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 DEA L+++LD+ F P + Q+ AA AL R SVISGGPGTGKTTTV ++L ++ Sbjct: 127 SPDEAALSESLDRYFGPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVVRILGLML 186 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG 249 + GER RI +AAPTGKAAARL S+ LP ++E K+ +P +T+HRLLG P Sbjct: 187 EQPGGERMRIAMAAPTGKAAARLASSIASLRETLPCSEEVKRHLPGQVTTIHRLLGTIPN 246 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 S RH+A NPL D ++VDEASM+DLP+M+ L+ AL HAR+I +GDRDQLASVEAGAV Sbjct: 247 STGFRHNARNPLPYDTIIVDEASMVDLPLMTALVTALMPHARLILIGDRDQLASVEAGAV 306 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 LGDIC A + +G+ A S++ + +L ++YRFG SGI Sbjct: 307 LGDICRAAES---------------------SGSAAFSIKGCVTVLDRNYRFGDGSGIAS 345 Query: 370 LAAAINRGDK-TAVKTVFQQDFTDIEKRLLQSGEDYIAML-EEALAGYGRYLDLLQARAE 427 L+ AIN GD A++ + T I + E L L G+ YL+ Sbjct: 346 LSRAINSGDAGEALRLLGDPANTTIALEATPTREAVRKRLAARVLEGFRPYLEA----ET 401 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 P+ ++ F+ +++L ALREGP+G AG+N +E + + + + +Y GRPV++ N Sbjct: 402 PEEALRLFDHFRILTALREGPWGAAGMNHTVETLLHEAGLLT--ASTPFYRGRPVLVTEN 459 Query: 488 DSALGLFNGDIGIALDRGQ--GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 D LFNGD GI L + + +F DG ++S+ P LP H T +AMTVHKSQGSE Sbjct: 460 DYTHKLFNGDTGIILPDPETGKQKAYFIASDGTVRSIPPEFLPAHVTAFAMTVHKSQGSE 519 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 FD ++LP + T ++TREL+YT +TRAR+ +++++DE + SA++ RTERRSGL + Sbjct: 520 FDRVLMVLPPEDTILLTRELIYTGITRARQAVTVWSDETVFSASVKRRTERRSGLREMLV 579 Query: 606 SRE 608 ++ Sbjct: 580 DKQ 582 >UniRef50_Q02HF8 Exodeoxyribonuclease V alpha chain n=27 Tax=Bacteria RepID=Q02HF8_PSEAB Length = 721 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 281/670 (41%), Positives = 358/670 (53%), Gaps = 74/670 (11%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSR-- 57 L +QL V LR LD F + P V LAAAL SH G GHVCL L Sbjct: 30 LLRQLDLWVARGWLRALDRAFVAFLVELQPQADPRVLLAAALTSHQLGHGHVCLDLEATL 89 Query: 58 ----------LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE----------- 96 E +E LL + + L W E L AS V DE Sbjct: 90 GAPDAALSLPPEGDEGRDVLLPSQLLRGVRLDAWREALAASSLVEVVDERPGDPEPSETA 149 Query: 97 PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDE--- 150 +P++LC RLYL R W +E +A E A LA L LF P D Sbjct: 150 TSPLVLCAQRLYLRRYWRHELEIALALRERLGRQAPLAADLAPRLAALFAQAPTEDGQRV 209 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKA 208 +WQK+A A+A S+I+GGPGTGKTTTV +LL L +A G+ RIRLAAPTGKA Sbjct: 210 TDWQKLACALAARGYFSLITGGPGTGKTTTVVRLLGLLQAPAVAAGQPLRIRLAAPTGKA 269 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 AARL+ES+G+ +R LPL ++ + IP + +TLHRLLG++P ++ RHH NPL LDVLVV Sbjct: 270 AARLSESIGQQVRALPLAEDVLQAIPAEVTTLHRLLGSRPDTRHFRHHRDNPLALDVLVV 329 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERAR 327 DEASMIDL MM+ L+DALP AR+I LGD+DQLASVEAGAVLGD+C A G ++AE Sbjct: 330 DEASMIDLEMMASLLDALPPQARLILLGDKDQLASVEAGAVLGDLCRDAEEGWYSAETRA 389 Query: 328 QLSRLTGTHVP--AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR---GDKTAV 382 L R++G +A L +L+ S RFG+ SGIG+LA +NR GD A+ Sbjct: 390 WLQRVSGETWQGLREGSAQAHPLAQQTVMLRHSRRFGASSGIGRLARLVNRQQAGDARAL 449 Query: 383 KTVFQQDFTDIEKRLLQSG--------------------EDYIAMLEEALAGYGRYLDLL 422 D D+ R + Y+ L E G L+ Sbjct: 450 LDSPPADLFDLRLRGERDAAFARLFVDGHPQAPGTPYGYRHYLQRLAEGRPAAGLALEDG 509 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 ++ AF+ ++LLCALR GP+GV GLN+R+ + + I WYEGRPV Sbjct: 510 AWERWAQSVLTAFDAFRLLCALRRGPWGVEGLNQRVAAELLRLGLIE--ADHGWYEGRPV 567 Query: 483 MIARNDSALGLFNGDIGIALDRGQ---------GTRVWFAMPDGN--IKSVQPSRLPEHE 531 ++ RND +LGL NGDIGIAL + RV F DG+ ++ V PSRL E + Sbjct: 568 LVTRNDYSLGLMNGDIGIALRLPERNDDGSLRFALRVAFPRNDGSGGVRFVLPSRLVEVD 627 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAI 590 T +AMTVHKSQGSEF H AL+LP PV+T+ELVYT +TRAR SL + A+ Sbjct: 628 TVFAMTVHKSQGSEFAHTALVLPDALNPVLTKELVYTGITRARDWFSLVESLPGVFEEAV 687 Query: 591 ATRTERRSGL 600 + R SGL Sbjct: 688 RRKVRRLSGL 697 >UniRef50_Q2SQD7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD7_HAHCH Length = 645 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 242/627 (38%), Positives = 341/627 (54%), Gaps = 33/627 (5%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAG-------DEHPAVTLAAALLSHDAGEGHVCL 53 M + + A + LRPLD A ++ + L AL S+ GH CL Sbjct: 1 MSIAHLIDAARQSNLLRPLDYYLGQQFAELATAATEEQRELLALTVALTSNALANGHTCL 60 Query: 54 PLSR-----LENNEASHPLLATCVSEIGELQNWEECLLASQA------VSRGDEPTPMIL 102 LS+ L + A + A L+ W E LLAS + +P +L Sbjct: 61 DLSQYAGRSLWPDSAEEDMRAFI---APSLKLWREALLASGLTQADSDIGDAGPVSPCVL 117 Query: 103 CG-DRLYLNRMWCNERTVARFFN-EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV 160 + YL R + ER +A + H + Q L + FP + Q +AAAV Sbjct: 118 DDRNCFYLARYFEYERQLAGLLQQRIAHHAAFPPEQVRQALLRFFPSVAAEDRQAIAAAV 177 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 A + + I GGPGTGKTTTVAKLL L ++++ RI LAAPTGKAAARL ES+ A Sbjct: 178 ACRQGFTAIVGGPGTGKTTTVAKLLGMLGELSE-PPLRIALAAPTGKAAARLMESIRNAK 236 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 QL +RIP+ A TLHRLL + + HHAG+PL +D+L++DE SM+DL MM Sbjct: 237 LQLGERLSHPERIPDTAYTLHRLLKVRGDGKGFVHHAGHPLPVDLLLIDEVSMVDLAMML 296 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC-AYANAGFTAERARQLSRLTGTHVPA 339 R+++ALP HAR++ LGD +QLASVEAG+V+GDIC A AG + + A L ++ G P Sbjct: 297 RIVEALPPHARLMLLGDSEQLASVEAGSVIGDICSQRATAGVSPDMASYLRKI-GLTPPY 355 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 +AA + D + L+ S+RF + SGIG+LA AIN GD A VF+Q + Sbjct: 356 PEEEKAAPVADCVIRLEVSHRFHARSGIGRLAQAINAGDSEAALQVFRQPEFEDADWENL 415 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 +++++ A + + + A N +++LCA++EG GV +N+ +E Sbjct: 416 PPSQLQSIIQQTAANA---YEPCFKADSVETALDAMNRFRILCAVKEGHGGVQEINQWVE 472 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR--GQGTRVWFAMPDG 517 +Q+K R + Y GRPVM+ RND +LGLFNGD+G+ R WF DG Sbjct: 473 AALQRKGLAPR--YQLHYHGRPVMVTRNDYSLGLFNGDVGLIWRDPASGQLRAWFPDADG 530 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 ++S+ RLP HET +AMT+HKSQGSEFDH + LP PV+TREL+YT VTRA++R+ Sbjct: 531 PLRSIPLYRLPAHETVYAMTIHKSQGSEFDHCVVALPETDQPVLTRELLYTGVTRAKKRI 590 Query: 578 SLYADERILSAAIATRTERRSGLAALF 604 S++ +L +I T+R SGLA Sbjct: 591 SVWGPRHLLIKSIKRPTQRMSGLARRI 617 >UniRef50_C0N790 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N790_9GAMM Length = 578 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 231/604 (38%), Positives = 333/604 (55%), Gaps = 35/604 (5%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDE---HPAVTLAAALLSHDAGEGHVCLPLSRLENNEAS 64 ++ + + + L QFA + E V+L A LL+ +GHVCL L+ E Sbjct: 5 IKLLHQQGVSGLACQFATFIDRKEAGKSTVVSLTAGLLTEAMSQGHVCLNLAN--PPEII 62 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVARFF 123 H L A + +W++ L +++V + + TP+IL LYL R W +E+ VA Sbjct: 63 HQLNAFLPNNAT---DWQQQLREAKSVGKPGDYTPLILTESGLLYLYRFWRDEQDVAHAI 119 Query: 124 NEVNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + HA++ V+ L Q L ++WQKVA A+AL+R ++VISGGPGTGKTT V Sbjct: 120 MQRRHAVDNVNLEQLQQDLANWHNPIAGVDWQKVAVAMALSRHLAVISGGPGTGKTTIVL 179 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 K+L L +D RI LAAPTGKAAARL +S+ ++ + TLHR Sbjct: 180 KILQCLQNQSDS--LRIGLAAPTGKAAARLQQSIS-------------QQQTAEVKTLHR 224 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG + + R++A PL LDVL++DEASMID+ +M++L+ A+P AR+I LGD QLA Sbjct: 225 LLGITEHNDQGRYNAERPLPLDVLIIDEASMIDISLMAKLMRAMPAKARLILLGDSQQLA 284 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SVE+GAVL ++ FTA+ Q L E A L DS LQ SYRF Sbjct: 285 SVESGAVLANLSESQQGTFTADFVAQFPALGLED--NTHQNETALLIDSFVRLQHSYRFD 342 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 +S +GQLA +N D + + I R D ++L GY +++ + Sbjct: 343 KESLVGQLADHVNAADAETTLQLLNEQTEAIWFRT-----DERSLLNVLTTGYNAFINAV 397 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 + R P IIQAF+++++L AL++GP V +N + +F+ QK + +Y GRP+ Sbjct: 398 ENRLPPQDIIQAFDQFRVLAALKQGPQSVMSVNRLMSRFLAQKG---WRTNQTFYSGRPI 454 Query: 483 MIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 MI +ND LFNGDIGI L G ++ V +RLP HET +AMTVHKSQ Sbjct: 455 MITQNDYRQQLFNGDIGIILRDADGHLKACFYFGEALRWVSLNRLPAHETVFAMTVHKSQ 514 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 GSEFD +++LP + +P+++REL+YTA+TRAR+ L++ A E +L I R +R SGL Sbjct: 515 GSEFDAVSILLPDEISPILSRELLYTAITRARKTLTILAVENVLKHTIHRRHQRESGLNQ 574 Query: 603 LFSS 606 Sbjct: 575 QLEK 578 >UniRef50_A4JS83 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Proteobacteria RepID=A4JS83_BURVG Length = 707 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 295/691 (42%), Positives = 373/691 (53%), Gaps = 89/691 (12%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 ++++ L E V LR +D FA +A D H + LAAAL SH G GH CL L Sbjct: 21 QMERLLAEWVACGWLREVDAAFARFLASEAPDAHALLLLAAALASHQLGRGHACLDLQAT 80 Query: 59 ENNEA----------------SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL 102 + A + +L + V + +W+ L V G TP++L Sbjct: 81 LADPAFVLSLPPDGPAPRDADAPVMLPSHVLTGVTVAHWQAALGHGDLVGDGAGATPLVL 140 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNH-----AIEVDEALLAQTLDKLFPV---------S 148 G RLYL R W E+ V +E A V L L LFP+ Sbjct: 141 TGTRLYLRRYWQYEQRVCDALDERLARSVELADAVPADRLRDALRTLFPLRHTRAEPAGE 200 Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM-----ADGERCRIRLAA 203 +WQK+A A+A SVI+GGPGTGKTTTV KLLA L + DG RIRLAA Sbjct: 201 RHPDWQKLACALAARSAFSVITGGPGTGKTTTVVKLLALLQSLALMAGGDGRALRIRLAA 260 Query: 204 PTGKAAARLTESLGKALRQLPLTD-----EQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 PTGKAAARL ES+ A QLP D + IP +TLHRLLG +P S+R RHHAG Sbjct: 261 PTGKAAARLNESIAGAAAQLPFDDFPQGASVRAAIPVSVTTLHRLLGTRPDSRRFRHHAG 320 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL LDVLV+DEASM+DL MM ++ ALP AR+I LGD+DQLASVEAGAVLG++C A Sbjct: 321 NPLSLDVLVIDEASMVDLEMMHAVLSALPARARLILLGDKDQLASVEAGAVLGELCQRAR 380 Query: 319 AG-FTAERARQLSRLTGTHVPAGTGTEAAS-LRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 AG +T + L ++TG V A A S L S+ +L+ S+RF ++SGIG+LA A+N Sbjct: 381 AGHYTPQTQAWLQQVTGEQVGAALVDPAGSALDQSIAMLRFSHRFSAESGIGKLAEAVNM 440 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML-------------------EEALAGYGR 417 G+ V V+ + D+ LL E A+L +A GY Sbjct: 441 GEPAEVARVWAHGYADLA--LLDCSEKPDAVLGALVVDGVADDDVERESADGQARRGYRH 498 Query: 418 YLDLLQARAEP------------DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 YL L+ P + ++ A E+QLLCALR GP+GV GLN R+E+ + Sbjct: 499 YLQTLRREQPPSGADQAGFDRWANAVLDAHGEFQLLCALRRGPWGVDGLNRRVERLLHAA 558 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGTRVWFAMPD--GN 518 I P WY GRPV++ RND LGL NGDIGI L D RV FA D G Sbjct: 559 NLI--APTGEWYLGRPVLVTRNDYELGLMNGDIGITLALPAPDGEMRLRVAFAAGDGSGR 616 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 IK V PSRL ET +A+TVHKSQGSEF HAAL+LP +PV+TRELVYT +TRARR L+ Sbjct: 617 IKWVLPSRLQAVETVFALTVHKSQGSEFAHAALVLPDTLSPVLTRELVYTGITRARRFLT 676 Query: 579 L--YADERILSAAIATRTERRSGLAALFSSR 607 + I+ A+ R R SGL+A F +R Sbjct: 677 IASAGGRAIIEQAVQMRVLRASGLSAGFDAR 707 >UniRef50_C1D6T5 Exonuclease V alpha subunit RecD n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T5_LARHH Length = 654 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 276/652 (42%), Positives = 362/652 (55%), Gaps = 53/652 (8%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 L L V ++LRPLD A +AG D PAV LA L SH G GH L L+ + Sbjct: 6 SLFAVLDTLVGTRRLRPLDRALARFLAGHVPDTPPAVLLATVLASHQLGRGHPALDLAAV 65 Query: 59 ENNEASH---------PLLATCVSEIGELQNWEECLLASQAVSR--GDEPTPMILCGDRL 107 + A+ P L G L W L ++ + R D P++L G L Sbjct: 66 HADPAATLGWADDGDTPDLTALPVFAGPLSGWLAQLESAACIDRPPADSGAPLVLAGHNL 125 Query: 108 YLNRMWCNERTV-----ARFFNEVNHAIEVD---EALLAQTLDKLFPVSDEINWQKVAAA 159 YL R W E TV AR + ++ + LLA D + +WQ VA A Sbjct: 126 YLRRYWQCEETVVEAIRARLPQRLAVPDDLSVRLDRLLADMRDADEAARRQTHWQSVAVA 185 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQM---ADGERCRIRLAAPTGKAAARLTESL 216 +A +ISGGPGTGKTTTV +LL L + A IRLAAPTGKAAARL +S+ Sbjct: 186 LAARLGFCIISGGPGTGKTTTVVRLLGLLQGLTLDAGRTPLAIRLAAPTGKAAARLQDSI 245 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 +A+ +L ++ +P + STLHRLLG P S+ RHHAG PL LDVLV+DEASMIDL Sbjct: 246 RQAVARL--DPAVREHVPAEVSTLHRLLGPLPDSRHFRHHAGQPLPLDVLVIDEASMIDL 303 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA--------YANAGFTAERARQ 328 MM+ ++ ALP HAR+I LGD+DQLASVEAGAVLG +CA A + E A Sbjct: 304 EMMAAVLSALPAHARLILLGDKDQLASVEAGAVLGSLCAGSRVDVQDPAQWAGSHEMAAW 363 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 L +G V A G A +L D + +L+KS+RFG DSGIG+LA A+N GD + TV+ + Sbjct: 364 LGAASGYAVKAD-GLPAGALTDHVVVLKKSHRFGDDSGIGELARAVNDGDASRAATVWPR 422 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAG---------YGRYLDLLQARAE------PDLIIQ 433 I + S L+ +G Y YL+++ A + +++ Sbjct: 423 HADSIARLEPASRCIEQLALQGRSSGSPAGWQAASYRAYLEIMAAGDQGDPDGWARQVLE 482 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGL 493 AFN +++LCALR+G GV+G+N IE ++ + S WY GRPVM+ +ND LGL Sbjct: 483 AFNRFRVLCALRQGEEGVSGVNAAIEASLRTAGLLP-AGRSEWYAGRPVMVLKNDYGLGL 541 Query: 494 FNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 NGD GIAL T RV FA+PDG ++ V PSRL + E+ +AMTVHKSQGSEF H L+ Sbjct: 542 MNGDTGIALPMPDATLRVCFALPDGRVRQVLPSRLTDVESAFAMTVHKSQGSEFSHTVLL 601 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 LP +P++TRELVYT +TRAR RL+L I A++ RT R SGLA Sbjct: 602 LPQHDSPILTRELVYTGITRARDRLTLVGSADIFRRAVSRRTVRHSGLAQRL 653 >UniRef50_Q0VNI0 Exodeoxyribonuclease V alpha chain n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VNI0_ALCBS Length = 645 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 268/641 (41%), Positives = 356/641 (55%), Gaps = 46/641 (7%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHP---AVTLAAALLSHDAGEGHVCLPL----- 55 + L+ ++ LR LDV A + V L AA S+ GH+CL L Sbjct: 12 EDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASGHLCLDLKNRAL 71 Query: 56 -SRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWC 114 ++L L+A GE NW L S VS+ + TP++L G RLYL R W Sbjct: 72 ATQLWGTNPPPELVALLP---GEPNNWLHELQQSTLVSQ-NGSTPLVLDGSRLYLRRNWA 127 Query: 115 NERTVARFF-NEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGG 172 E VA ++ A + EA L + L KLFP S+ +WQ+VA A+A IS+I+GG Sbjct: 128 REVAVADAIEQKLATANPLPEAPLREALAKLFPGSNNHTDWQQVACALASRSGISIITGG 187 Query: 173 PGTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 PGTGKTTTV +LL L MAD +R RIRLAAPTGKAAARLTES+G+ + +L + + Sbjct: 188 PGTGKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKLHVDATVR 247 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 IP + +TLHRLLG +P S+ RHH NPLH D++VVDEASMID+ MM+ L++AL H Sbjct: 248 DAIPTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLLEALSPHT 307 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG----THVPAGTGTEAA 346 R+I LGD+DQLASVEAGAV+GD+C +A+ G +R + T + Sbjct: 308 RLILLGDKDQLASVEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQETDQNPGN 367 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 +L +L+ ++R GIG+LA A+N + V+ FQ+ + ++ L S + Sbjct: 368 ALAQQTAMLRTNWRSKDSPGIGELARAVNEENLPQVRESFQRYPDSLYRQHLSSDSQQLE 427 Query: 407 -MLEEALAGYGRYLDLLQARAEPDLIIQAFNEY-----------QLLCALREGPFGVAGL 454 +L G+ L A A P F+++ QLL LR GPFGV L Sbjct: 428 TLLLNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSGPFGVEQL 487 Query: 455 NERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG------- 507 N+RI +QQ+ P WY GRPVM+ RND LGL NGD+G+ L + Sbjct: 488 NQRITHHLQQQDLA---PEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKGTAEL 544 Query: 508 -TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 RV F +PDG IK V PSRL ET +AMTVHKSQGSEF H L+LP P++TREL+ Sbjct: 545 LLRVAFQLPDGRIKWVLPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLTRELI 604 Query: 567 YTAVTRARRRLSL--YADERILSAAIATRTERRSGLAALFS 605 YTAVTRAR R +L + +L +A+ RT R SGLA S Sbjct: 605 YTAVTRARDRFTLLEFGKSAVLDSAVKKRTWRASGLAERLS 645 >UniRef50_A9L0I2 Exodeoxyribonuclease V, alpha subunit n=12 Tax=Shewanella RepID=A9L0I2_SHEB9 Length = 740 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 259/716 (36%), Positives = 354/716 (49%), Gaps = 121/716 (16%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVA-----GDEHPAVTLAAALLSHDAGEGHVCLPLSR 57 L + L + + + L PLD FAL ++ +HP L ALLS H CL L+ Sbjct: 30 LPELLKQWEQERLLTPLDRHFALEMSHLHPSDSQHPLFILLCALLSQQLSSQHSCLVLAH 89 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 + + C + L+ E L AV + P+I RLYL R E Sbjct: 90 IVPLNPMAEQSSHCKISL-SLEALTETLQTFDAVGQAGSNKPLIFDNGRLYLQRYHQFET 148 Query: 118 TVARFFNEV------------NHAIEVDEALLAQTLDKLFPVS----------------- 148 +VA + NH + A L LD+LFP + Sbjct: 149 SVAASLIRLSGSVSKHFSEEVNHQEQTQTAKLRSLLDQLFPATVSDPHSLTTNVLTTSVI 208 Query: 149 ---------DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRI 199 I+WQKVA A AL ++++VI+GGPGT + L+ + + I Sbjct: 209 TKSDSTQSTAPIDWQKVATATALGKKLAVITGGPGT---GKTTTVTKLLLLLQMESQQEI 265 Query: 200 RLAAPTGKAAARLTESLGKALRQLPL-------------------TDEQKKRIPEDASTL 240 RL APTGKAAARL+ES+ + +L RIPE+ASTL Sbjct: 266 RLVAPTGKAAARLSESIKASKARLAKELSAHTDVVDEARNRNNQDFLTALGRIPEEASTL 325 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLLG P S RHH GNPL LD+L+VDEASM+DLPMM +L+ ALP+HA +I LGD+DQ Sbjct: 326 HRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLILLGDQDQ 385 Query: 301 LASVEAGAVLGDICAYANAG----------------------FTAERARQLSRLTGTHVP 338 LASVEAGAVL DICA ++ E+A +LS LTG + Sbjct: 386 LASVEAGAVLADICAGLKMPVEPNNLAQNNTASNNSALWQMRYSKEQAERLSALTGFELT 445 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK--- 395 ++A L DSLC+L S+RF D+GIGQLA+A+NR D + V+QQ ++ Sbjct: 446 PYI-SDAPKLGDSLCMLMHSHRFKGDAGIGQLASAVNRADLQGILQVWQQGPAELSWLEH 504 Query: 396 -----------RLLQSGEDYIAMLEEALAGYGRYLDLLQ---------ARAEPDLIIQAF 435 + +LE+A YG YL L R II++F Sbjct: 505 SMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLSALNSDENHSDLSKRPSTAEIIESF 564 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 N+Y++LCA+R G +GV G+N+ + Q + + I P +Y GRP++I ND LGLFN Sbjct: 565 NQYRILCAMRSGDYGVEGINQYVTQALANAKLIK--PLQEFYLGRPIIIQSNDYNLGLFN 622 Query: 496 GDIGIAL---DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 GDIG+ L D+ + F DG++ V P+RLP HET +AMTVHKSQGSEF AL+ Sbjct: 623 GDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEFSRVALV 682 Query: 553 LPSQRT----PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 LP + ++T+ELVYTA+TRA+ + + + A + T+R SGLA Sbjct: 683 LPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFERASSQATQRASGLADRL 738 >UniRef50_A8FUM3 Exodeoxyribonuclease V n=7 Tax=Shewanella RepID=A8FUM3_SHESH Length = 683 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 259/681 (38%), Positives = 362/681 (53%), Gaps = 86/681 (12%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAG--------------DEHPAVTLAAALLSHDAGE 48 ++ L + + PLD FAL +A L ALLS + Sbjct: 8 IKALLKVWESERLITPLDRHFALEMAQLHKIKLHKTEHADHTYSELFLLICALLSRQLSQ 67 Query: 49 GHVCLPLSRLENNEASHPLLATCV-----SEIGELQNWEECLLASQAVSRGDEPTPMILC 103 H CLP+ ++ + ++ C +EI E+ + + TP+IL Sbjct: 68 QHTCLPIHQIMLDNPMQEPISNCQILCSHNEIIEILAQFNAISSPGLEQASSPSTPIILD 127 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALL-----AQTLDKLFPVSDE-----INW 153 LYL R + E VA + + +E++E TL+ LFP SDE +W Sbjct: 128 NGDLYLQRYYQFETQVASYLTLLAD-VEINEQPTEINHTRSTLEMLFPQSDEMGATDFDW 186 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK+A A A T+R++VI+GGPGTGKTTTV KLL L Q A IRL APTGKAAARL+ Sbjct: 187 QKIATATAFTKRLAVITGGPGTGKTTTVTKLLFLLTQQA---AMTIRLVAPTGKAAARLS 243 Query: 214 ESLGKALRQLP---------LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 ES+ + +L + R+PE+ASTLHRLLG P S + RHH NPL LD Sbjct: 244 ESIKASKVRLKMELAPFADQIDLTSLSRVPEEASTLHRLLGVIPNSPKFRHHKDNPLRLD 303 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG---- 320 +LVVDEASM+DLPMM +L+ ALP HAR+I LGD+DQLASVEAGAVL DICA Sbjct: 304 LLVVDEASMVDLPMMHKLLSALPTHARLILLGDQDQLASVEAGAVLADICAGLKQKNTRT 363 Query: 321 ----------FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 ++++ A LS L+G + +++ + DSLC+L S+RF D+GIGQL Sbjct: 364 NASDAKWQMRYSSDYAGYLSTLSGFDLSPFI-SQSPKIGDSLCMLMHSHRFKGDAGIGQL 422 Query: 371 AAAINRGDKTAVKTVFQQDFTDIEK----RLLQSGEDYIAMLEEALAGYGRYLDLLQ-AR 425 A A+N DK + V+Q + ++ + A+L +A+ Y RYL++ + Sbjct: 423 AGAVNNSDKGRIMQVWQTGYDELLWIEHLKTNAGNSGLDALLTQAVEHYRRYLEMAKDDN 482 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA 485 + II +NE+++LCA+R G +GV G+N+ + ++Q + I + +Y GRPV+I Sbjct: 483 KDASEIIDCYNEFRVLCAMRAGEYGVDGINQGVTAALKQAKLIS--ADTEFYPGRPVIIQ 540 Query: 486 RNDSALGLFNGDIGIALDRGQGT------------------RVWFAMPDGNIKSVQPSRL 527 ND LGLFNGDIG+ L T F DG+I V P+RL Sbjct: 541 SNDYNLGLFNGDIGLILPDDLNTVSDHLAQDGDTAKHSARLMAHFIQADGSILKVLPARL 600 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTP----VVTRELVYTAVTRARRRLSLYADE 583 P H+T +AMTVHKSQGSEF + AL+LP +P ++T+ELVYTA+TRA+ + + Sbjct: 601 PSHDTCFAMTVHKSQGSEFANVALVLPIWPSPAQKQLLTKELVYTAITRAKLHFTCLGSQ 660 Query: 584 RILSAAIATRTERRSGLAALF 604 + A T+R SGLA Sbjct: 661 AVFEHASLQATQRSSGLARRL 681 >UniRef50_A7K3N3 Exodeoxyribonuclease V alpha chain n=60 Tax=Gammaproteobacteria RepID=A7K3N3_VIBSE Length = 715 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 266/486 (54%), Positives = 350/486 (72%), Gaps = 20/486 (4%) Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-DGERC 197 QTLD+L P+S +NWQKVAAAVALTRR +VISGGPGTGKTTTV KLLAALI+ A + Sbjct: 232 QTLDELVPLSACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNL 291 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 I+L APTGKAAARLTES+GKA+++LP++ E K +IP ++STLHRLLGA P S RH+ Sbjct: 292 TIKLVAPTGKAAARLTESIGKAVQELPVSPELKAKIPTESSTLHRLLGAIPNSAEFRHNK 351 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPLHLD+LV+DEASM+DLPMM +++DALP HAR+I LGD+DQLASVEAGAVLGDIC++ Sbjct: 352 QNPLHLDILVIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFH 411 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G+ E+A +++LTG A TG A+S+ DSLC+LQKSYRF + SGIGQLA A+N G Sbjct: 412 ALGYGKEQASAIAKLTGFDTLAHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSG 471 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR------------ 425 +V V+ +DF+DIE L S + Y M++ + YGRYL + + Sbjct: 472 SAASVDNVWARDFSDIEHFALSS-QHYNQMMQTLVQEYGRYLKRIGQQETDPKTGEPESL 530 Query: 426 -AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 + ++ FN+ +LLCA+REG FGVAGLN+RIE+ + RK+ + WY GRPVM+ Sbjct: 531 THKAKAVLDTFNQCRLLCAIREGDFGVAGLNQRIEKALA-ARKLIQVQDEIWYHGRPVMV 589 Query: 485 ARNDSALGLFNGDIGIALDRGQGT----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 RND LGL+NGDIGI + +V+F +PDG++KSV PSR+PEHET +AMT+HK Sbjct: 590 TRNDHGLGLYNGDIGICMRDDSEEEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHK 649 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFD+ +ILP +P++TREL+YT +TRA++RL+LYA+ +L I +T R SGL Sbjct: 650 SQGSEFDYTLMILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTTRASGL 709 Query: 601 AALFSS 606 ++ Sbjct: 710 VQRLTN 715 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 16/161 (9%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGD------EHPAVTLAAALLSHDAGEGHVCLPL 55 L L LR LD QFA + ++ A+ A ++S + G+GH+CL L Sbjct: 13 SLLVVLERLAHKGALRQLDYQFACFIDSQTNDEQPDNQALAFIAGVVSSELGKGHICLSL 72 Query: 56 -------SRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLY 108 + L + A ++ + +W E L S V E P++ G+RLY Sbjct: 73 FDAQGQSTDLASKLGLFGESALALNTQLQGIDWIEVLQNSSVVGAQGEALPLMFDGERLY 132 Query: 109 LNRMWCNERTVARFFNEVNHAIEVDEA---LLAQTLDKLFP 146 L+R W E T+A N++ A+ + L++ L+ LF Sbjct: 133 LHRYWHYEVTLAEKLNQLGAAVNLQPQEFVRLSELLNHLFA 173 >UniRef50_C5CL22 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Betaproteobacteria RepID=C5CL22_VARPS Length = 708 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 262/675 (38%), Positives = 357/675 (52%), Gaps = 74/675 (10%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59 L + E LR LD FA + + A+ LAAAL+ H G GH CL L L Sbjct: 26 LLTMMASWREQGWLRRLDTAFARFLVDLSPTAPDALVLAAALVVHMEGRGHSCLRLDELL 85 Query: 60 NN---------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT---------PMI 101 + E + L S G++ W S V D + P++ Sbjct: 86 RDPQAVLGWPPEPAAALRVALDSLPGDVDIWIATFQTSPLVGSDDGASRSTTIDAHPPLM 145 Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNHA-IEVDEALLAQTLDKLFPV--------SDEIN 152 L G LYL R W +ER VA + + + + VD + LD+LFP I+ Sbjct: 146 LRGHTLYLRRYWEDERRVAAQVDARSRSELPVDPVTVRMWLDRLFPADTHASPDSEAAID 205 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAAR 211 WQK A AVAL ++S+++GGPGTGKT T A+LLA L + ER RI LAAPTGKAAAR Sbjct: 206 WQKAACAVALRSKLSILTGGPGTGKTYTAARLLALLYAVDPAPERLRIALAAPTGKAAAR 265 Query: 212 LTESLGKALRQL------PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDV 265 L +++ +L +L L+ A TLH LLGA+P ++ A +PL +DV Sbjct: 266 LKQAIETSLTELQDRLGDSLSLGALAAHIGAARTLHALLGARPDTRAFGFDAAHPLDVDV 325 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAE 324 ++VDEASMI L MM+ L++ALP ARVI LGD+DQLASVEAGAVLGD+C +A G + Sbjct: 326 VIVDEASMIHLEMMAALLEALPTQARVILLGDKDQLASVEAGAVLGDLCRHAEHGLYRLS 385 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 A + +G H+PA + L +L+ S RFG IGQLA A NRGD A + Sbjct: 386 TAAYVEAASGQHIPAAYMGDGPPLAQQTVMLRASKRFG--GAIGQLALAANRGDSAAAEA 443 Query: 385 VFQQDFT-----------------DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 + + D + ++ R + A GYG YL LQAR Sbjct: 444 LLRDDSSPAVAWLDGGSASTAVRLALQGRDAAGEAGGVDDAVGAYGGYGVYLTALQARPR 503 Query: 428 PD----------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 D +++AF +++LCA+REG +G GLN+ IE+ + + ++ + WY Sbjct: 504 GDEAPAHAGWTLAVLRAFERFRVLCAVREGEWGAMGLNQAIERALVAEGRLTKAG--EWY 561 Query: 478 EGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 EGRPV++ RND+ LG+FNGDIGI L +G R +F + +++SV SRL ET + Sbjct: 562 EGRPVIVTRNDAGLGVFNGDIGITLKPAAKGAPLRAYF-LDGESVRSVAVSRLAHVETAF 620 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI-LSAAIATR 593 AMTVHKSQGSEF H AL+LP + + V+TRELVYT +TRAR +L L+ A+A Sbjct: 621 AMTVHKSQGSEFAHTALVLPREPSRVLTRELVYTGITRARDAFTLVTGRTASLADALAHP 680 Query: 594 TERRSGLAALFSSRE 608 T R SGL + E Sbjct: 681 THRASGLLERLAPAE 695 >UniRef50_Q1N2Q9 Exodeoxyribonuclease V alpha chain n=1 Tax=Bermanella marisrubri RepID=Q1N2Q9_9GAMM Length = 620 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 257/630 (40%), Positives = 371/630 (58%), Gaps = 51/630 (8%) Query: 4 QKQLLEAVEH--KQLRPLDVQFALT---VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 + QL +E + R +D QFA ++ D+H + + A L+S G+G+VC +S+ Sbjct: 3 EYQLNRFLEQHGQAFREIDKQFAKFCLDLSKDDH--LAIIALLVSDQLGQGNVCFDISQ- 59 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 H +L+ SE+ EL C LA QA S D+ P++ G R+YL R E Sbjct: 60 -----PHSILSE--SELSEL-----CHLAKQANSN-DQNFPLVFEGSRIYLQRYHQYECF 106 Query: 119 VARFFNEVNHAIEVDEAL--LAQTLDKLFPVS---DEINWQKVAAAVALTRRISVISGGP 173 V + E D + L ++ LFP + EI+WQKVA +VA+ +VISGGP Sbjct: 107 VEQAIRSRCQQYENDLEVDSLLNMINNLFPPNYSKQEIDWQKVAVSVAVQSAFTVISGGP 166 Query: 174 GTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GTGKTTTV KLLA LI+ G + IRLAAPTGKAA RLTES+G+A +L + + K Sbjct: 167 GTGKTTTVIKLLALLIEQYKVKGRQPIIRLAAPTGKAAMRLTESIGQAKHRLQVDEHVKD 226 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 IPE+ASTLHRLL + NPLHLD+LVVDEASMIDLPMM++L+ ALP H + Sbjct: 227 AIPEEASTLHRLLKRNREGD-FYFNQMNPLHLDILVVDEASMIDLPMMAKLLAALPKHGQ 285 Query: 292 VIFLGDRDQLASVEAGAVLGDIC-AYANAGFTAERARQLSRLTGTHV----PAGTGTEAA 346 ++ LGD+DQL+SVEAG+VL DIC + GF+ + + +++LT + A Sbjct: 286 LVLLGDKDQLSSVEAGSVLADICDSGTRHGFSESQLKLINQLTDIPLDQLKQNVAELHGA 345 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 +R+ +C L+KS+RF SGI LA A N GD + +F+ DF+D+ L + + Sbjct: 346 EIRNHVCHLRKSHRFSDHSGIAALARAANNGDVNRWQQIFEGDFSDLNFFDL-TESNRQT 404 Query: 407 MLEEALAGYGRYLDLLQARAEPDLII----QAFNEYQLLCALREGPFGVAGLNERIEQFM 462 ++ ++ Y Y +L+ + D + + FN Y++LCA++EG GVAG+N+ +EQ + Sbjct: 405 LILQSAKLYSEYQNLIASDDNSDAVARRVHEVFNRYRILCAVKEGELGVAGINQSLEQAL 464 Query: 463 QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA----LDRGQGTRVWFAMPDGN 518 + WY GRP+MI +ND L L+NGD+GI +D R F D Sbjct: 465 GYQE--------TWYAGRPIMIQQNDYGLNLYNGDVGIVLPRLIDGKTQLRAAFLNADSE 516 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 I+ +QP+RLP+HET +AMTVHKSQGSEF+H AL+LP PV+T+EL+YT +TRA+ RL+ Sbjct: 517 IRWLQPARLPQHETVYAMTVHKSQGSEFEHCALVLPEYPAPVLTKELLYTGITRAKARLT 576 Query: 579 LYADERILSAAIATRTERRSGLAALFSSRE 608 L A +++++ + + +R SGL + E Sbjct: 577 LLARDKLIAYTLRNQVQRASGLRDRLWTVE 606 >UniRef50_Q7VRF0 Exonuclease V, alpha chain n=2 Tax=Candidatus Blochmannia RepID=Q7VRF0_BLOFL Length = 640 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 213/639 (33%), Positives = 342/639 (53%), Gaps = 38/639 (5%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHP--------------AVTLAAALLSHDAGE 48 +Q L + + K LD+QF+ + + P + LA+ +S Sbjct: 1 MQHLLKKIISLKLHNELDIQFSKMLITESFPCDNTNNYYHNIKKIVLMLASIYVSTYVRS 60 Query: 49 GHVCLPLSRLENNEASHPLLATCVSEIGEL------QNWEECLLASQAVSRGDEPTPMIL 102 GH CLP+ L + + + EI + +W++ LL+S AV G TP++L Sbjct: 61 GHTCLPIYLLSSGKLFQNYHPDLIHEIIQKTKKLSTNDWQDILLSSSAVGDGSSITPLVL 120 Query: 103 CGDRLYLNRMWCNERTVARFF-NEVNHAIEVDEALLAQTLDKLF-PVSDEINWQKVAAAV 160 RLYL+ +W +E TVA+FF + N +D+ + L+KLF S EINW K+A A+ Sbjct: 121 NNRRLYLHYIWEHECTVAKFFVHHSNDDSYLDQTKITIILNKLFLKTSKEINWHKIATAL 180 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 ++ +ISG GTGKT+T+A+++ AL + + RI++ PTGK+A LT + K Sbjct: 181 SMIHSRILISGEAGTGKTSTIAQIITAL--LLYNNKLRIKMVTPTGKSATVLTHACHKIF 238 Query: 221 RQLPLTDEQKKRIPE-DASTLHRLLGAQPGSQRLRHHAGNPL----HLDVLVVDEASMID 275 L + A+T+H LG + ++ + ++D L++DEASMI Sbjct: 239 NDLNQLHMSNVHTSDLKATTIHNFLGLKLYNKYKYQYQYYSNYLNTNIDCLIIDEASMIS 298 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 L ++S+LI L ++ +VI +GD QL +E+G+V DIC ++N G++ ++ +L +LT Sbjct: 299 LSLLSQLIMHLSNNTKVILIGDHHQLHPIESGSVFQDICQFSNFGYSIQQQEKLKKLTNH 358 Query: 336 HVPAG-----TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQD 389 + ++ D +C+ +K+YRF +SGI LA ++ GD + + + Sbjct: 359 TLSMNNSSYTQNNYCNTIADKICIFKKNYRFHKNSGIIHLAKSVKIGDYNQTLFILHSKQ 418 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA-RAEPDLIIQAFNEYQLLCALREGP 448 +TD+ LQ +DYI ++ Y YL ++Q + ++ F Y++LCALR GP Sbjct: 419 YTDLSYNHLQKKKDYINLIIHCAKKYSNYLKIIQNNKVSIKHALKIFEYYRILCALRHGP 478 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG- 507 FGV LN IEQ + + I + HS Y GRP++I +N+ +L L+NG+IG+ L Q Sbjct: 479 FGVTQLNHYIEQVLNDQSLITLN-HSGNYIGRPIIILQNEPSLELYNGEIGLLLLNSQNY 537 Query: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 +F IK++ ++LP +ET +AMT+HK+QGSEF H ++I P TP++TREL+Y Sbjct: 538 LSAYFLSSLHEIKTIPINQLPSYETCFAMTIHKAQGSEFQHISIIFPYHHTPILTRELLY 597 Query: 568 TAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 TA+TRAR+ L LYA + +L I R SGL Sbjct: 598 TAITRARQHLDLYATDNVLIHTINLMNHRYSGLFDQIKK 636 >UniRef50_A1SUW2 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Psychromonas RepID=A1SUW2_PSYIN Length = 698 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 267/685 (38%), Positives = 375/685 (54%), Gaps = 83/685 (12%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVT-LAAALLSHDAGEGHVCLPLSR---- 57 + QL + E LR +D FA +A +T L+AA S G GH+CLP+ Sbjct: 1 MLTQLKQWKEQGLLRSIDYHFAAFMAEMGADKLTQLSAAFCSEYLGLGHICLPVEEIIIR 60 Query: 58 ------------------------LENNEASHPLLAT--CVSEIGEL------------- 78 L+NN +H LL++ CV + L Sbjct: 61 LNDKCSLSELDLQGFCREHDMECLLQNNFEAHALLSSSICVGDNAPLCLQFNALYLTRYA 120 Query: 79 ---QNWEECLLASQAVSRGDE---PTPMILCGDRLYLNRMWC----------NERTVARF 122 Q + LL +S G + ++ + YL + WC E+ + Sbjct: 121 LFEQLIADKLLDQPKLSLGSDIKVELDVLFATNYTYLWQDWCRDPRQPLPLLCEKYIDLL 180 Query: 123 FNEVNHAI-------EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 + + + A Q L L P + NWQKV+AA+ALT VISGGPGT Sbjct: 181 PGSTVDWVGVEQLFSQAENAQDLQPLGSLIPENKRCNWQKVSAALALTTARCVISGGPGT 240 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTTTV KLLA L++ I+L APTGKAAARLTES+ AL +L + K ++P+ Sbjct: 241 GKTTTVTKLLALLLKFQPT--LLIKLVAPTGKAAARLTESITHALVELNIEPGIKDKMPK 298 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A+T+HRLLG + S R + L++D+LVVDEASM+DLP+M++L+ ALPDHAR+I L Sbjct: 299 VATTIHRLLGVKANSNHFRFNQDEKLNVDLLVVDEASMVDLPLMAKLLMALPDHARLILL 358 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD+DQLASVEAGAVLGDIC + +G++A++A+ L+ LTG T + ++ D+LCLL Sbjct: 359 GDKDQLASVEAGAVLGDICHFIESGYSAKKAQLLADLTGYTSLTKTAPRSPNMADNLCLL 418 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 +KSYRF SGIG LA AIN G + K + D + + + + L GY Sbjct: 419 RKSYRFDQYSGIGYLAKAINSGRANSKKVMALCDDYNDLQHYPNTELGKKELAALVLEGY 478 Query: 416 GRYLDLLQA-----RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH- 469 YL L R +++ FN++++LCA REG +GV LN+ E +++ + Sbjct: 479 RPYLQNLSTITVDNRNLAGQLLKQFNQFKILCATREGEWGVKCLNKLCETVLEKAGLLTT 538 Query: 470 -------RHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTRVWFAMPDGNIKS 521 +H + WY GRPVMI +N+ LGL+NGDIG+ LD RV+F MPD +I Sbjct: 539 GQVHKDPQHAYVYWYVGRPVMITQNNYHLGLYNGDIGLCLLDESLQLRVYFQMPDASIAD 598 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 QPSRLP HET +AMTVHKSQGSEF+H L LP VV+REL+YTA+TRA+++L+L+A Sbjct: 599 FQPSRLPNHETVFAMTVHKSQGSEFEHTVLALPENHVSVVSRELIYTAITRAKKQLTLFA 658 Query: 582 DERILSAAIATRTERRSGLAALFSS 606 D ++++A+ +T+R S L S Sbjct: 659 DLSLMASAMRHKTKRFSRLVERLKS 683 >UniRef50_B5JRL2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL2_9GAMM Length = 672 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 250/656 (38%), Positives = 344/656 (52%), Gaps = 63/656 (9%) Query: 12 EHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL---------- 58 + LR +DV + + A A A +S GH+CL L RL Sbjct: 15 QQGWLRAIDVALVQFLQQQDDSADDSALAAAALVSQQLSLGHICLDLDRLFTEQGECAQR 74 Query: 59 -------ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNR 111 + A H LA+ + ++G + L ASQ V ++ P++L RLYL+ Sbjct: 75 MMGETPKHTSAAPHTNLASELYQLGWPA-LKAALQASQFVGEKNDDKPLVLDESRLYLHS 133 Query: 112 MWCNERTVARFFNEVNH---AIEVDEALLAQTLDKLFPVSDE----INWQKVAAAVALTR 164 W E VA+ A ++ LD LFP S NWQK+A A AL Sbjct: 134 QWRTEHRVAQHLASRIKNALKPPQTPATRSKILDALFPSSPNSEAATNWQKIACANALRG 193 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 SVI+GGPGTGKTTTV K+L AL+ + I LAAPTGKAAAR+ ES+ AL Sbjct: 194 HFSVITGGPGTGKTTTVVKVLCALLAQQSDQTLHIYLAAPTGKAAARMQESMNHALESHA 253 Query: 225 LT--------DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 + D ++++ A T+HRLLG P S+ RH+ +PL DV++VDEASMI L Sbjct: 254 IDPKLFDGQLDNWREQLQVKAKTIHRLLGVIPSSREFRHNERHPLRCDVVIVDEASMIAL 313 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA-GFTAERARQLSRLTGT 335 M L+ ALP+ ++ LGD+DQLASVEAGAV+GD+C A+ + + A LSR++G Sbjct: 314 DQMDSLLRALPESTHLVLLGDKDQLASVEAGAVMGDLCQGADDIDYQPQHAEWLSRVSGE 373 Query: 336 HVPAGTGTEAASLR-DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE 394 + A R + LLQ S+RF ++SGIGQLA AIN G + + +FQ+ +DI Sbjct: 374 TLKASAINPQGHDRLQCITLLQHSHRFDANSGIGQLAEAINGGHQNDIDPLFQR-HSDIG 432 Query: 395 KRLLQSGEDYIAM--LEEALAGYGRYLDLLQAR------------AEPDLIIQAFNEYQL 440 L + E GY YL LQ + +++A N +QL Sbjct: 433 LVALTQWRSLCRLGNAELDATGYAHYLQQLQQQRPAADAAPADFDQWALTLLKARNRFQL 492 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRH----PHSRWYEGRPVMIARNDSALGLFNG 496 LCALR G +GV +N+ IE +Q++ + R P + WYEGRP+MI +ND +GL NG Sbjct: 493 LCALRRGEWGVEAINQAIEADLQRQHLLPRDDEQQPKAVWYEGRPIMIQKNDYPVGLMNG 552 Query: 497 DIGIALDR-----GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 D G+ L + F D ++ + PSRL ET +AMTVHKSQGSEF+H AL Sbjct: 553 DTGLVLSKPDANGDNRLYAVFPDADQGVRWIAPSRLSHVETAFAMTVHKSQGSEFEHTAL 612 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSL-YADERILSAAIATRTERRSGLAALFSS 606 +LP + +PV++RELVYTAVTRA+ + SL AD ++L T R SGL + Sbjct: 613 LLPPEDSPVLSRELVYTAVTRAKAQFSLCCADTQLLKQLSQRPTMRSSGLQRQLEN 668 >UniRef50_D0YW55 Exodeoxyribonuclease V alpha chain n=3 Tax=Gammaproteobacteria RepID=D0YW55_LISDA Length = 707 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 267/503 (53%), Positives = 347/503 (68%), Gaps = 20/503 (3%) Query: 119 VARFFNEVNHAIEVDEALLA-------QTLDKLFPVSDEINWQKVAAAVALTRRISVISG 171 VA ++++ ++D L Q LD L P S +NWQKVAAAVALTR+ +VISG Sbjct: 209 VADQISQLD-WKQIDAVLAQAQTISDLQILDTLVPSSFCLNWQKVAAAVALTRQFAVISG 267 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GPGTGKTTTV KLLAAL+ I L APTGKAAARLTES+ A++ LP+TDE K Sbjct: 268 GPGTGKTTTVTKLLAALVMENPQHIPNIMLVAPTGKAAARLTESITNAVKSLPVTDEIKA 327 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 IP +ST+HRLLGA PG RHH GNPLHLDVLVVDEASM+DLPMM+RL++A+P HA+ Sbjct: 328 HIPTQSSTIHRLLGAIPGRVDFRHHKGNPLHLDVLVVDEASMVDLPMMARLLEAMPAHAK 387 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 +I LGD+DQLASVEAGAVLGDIC+++ ++ ++A LS+LTG + + T ++ + D Sbjct: 388 LILLGDKDQLASVEAGAVLGDICSFSALSYSKQQAEVLSQLTGFDLSSNT-SKTNVVADC 446 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 LC+LQKSYRF + SGIGQLA AIN G + V+ V+QQ F DI L S + Y +M+ + Sbjct: 447 LCMLQKSYRFHALSGIGQLAKAINGGRENKVQAVWQQGFKDINFYPL-STDSYKSMINQI 505 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH 471 + Y YLD ++ P ++QAF + +LLCALREG FGV GLN+RIE + + KI + Sbjct: 506 VMFYRNYLDAIEQSQSPREVLQAFAQVRLLCALREGDFGVVGLNQRIEHELGRIGKIKQS 565 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQG----TRVWFAMPDGNIKSV 522 + WY GRP+MI++ND LGL+NGDIGIA+ D G +V+F M DG +K Sbjct: 566 DET-WYIGRPIMISQNDHGLGLYNGDIGIAMLEPNTDIAAGSTPRMKVYFEMSDGEVKGF 624 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 PSRLPEHET +AMT+HKSQGSEF ++LP +P++TRELVYT VTRA+ RL LY Sbjct: 625 LPSRLPEHETVYAMTIHKSQGSEFADTVMVLPKDYSPILTRELVYTGVTRAKARLYLYGQ 684 Query: 583 ERILSAAIATRTERRSGLAALFS 605 + +++ I T+T R SGL+ L S Sbjct: 685 QEVMARGIRTKTLRASGLSHLLS 707 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 60/171 (35%), Positives = 79/171 (46%), Gaps = 27/171 (15%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGD----EHPAVT----LAAALLSHDAGEGHVCLP 54 + L E LR +D QFA VA + P V LA+A LS + G GHVCLP Sbjct: 1 MLNMLDRLTEQGVLRAIDSQFAKFVARSVTSIDTPEVVQLVSLASAWLSSELGRGHVCLP 60 Query: 55 LSRLENN---------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGD 105 L+ + E + ++ + Q W E L+ S AVS G +PTP++L Sbjct: 61 LTAEDQQSMGMFGLHGELAQQVVQLLPEALHHPQCWPEVLIQSHAVSDGSQPTPLVLSDG 120 Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEA----------LLAQTLDKLFP 146 RLYLNR W E++VA + A VD A L Q LD+LFP Sbjct: 121 RLYLNRYWQFEQSVAGRILAMATAKGVDTAAQALSSHHIDQLQQNLDQLFP 171 >UniRef50_D0IXL7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Comamonas testosteroni RepID=D0IXL7_COMTE Length = 696 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 260/661 (39%), Positives = 358/661 (54%), Gaps = 70/661 (10%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLENN 61 L + LR LD A VA + PA+ +A A+L+ G GH CLPL L + Sbjct: 33 AALERLADAGLLRRLDSALAAFVAAQDAEAGPALLVATAVLAQMEGRGHSCLPLKALAGD 92 Query: 62 ---------EASHPLLATCVSEIGELQNWEECLLASQAV-------SRGDEPTPMILCGD 105 EA + G L +W + L S V D P++L Sbjct: 93 PNQILAWPKEAERLQQSLWEQLPGRLADWLQALRRSPVVRVVQPGAPAADRGQPLVLLDG 152 Query: 106 ---RLYLNRMWCNERTVARFFNEV--NHAIEVDEALLAQTLDKLF----PVSDEINWQKV 156 LYL R W ER+VA + A+ +DE + + L +LF ++ ++WQK+ Sbjct: 153 AAPLLYLRRYWDYERSVAAHIAQRTAADAVALDEPRVREWLGRLFSSSAAAANAVDWQKL 212 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-DGERCRIRLAAPTGKAAARLTES 215 A A+AL +SVI+GGPGTGKT T A+LLA L A D + R+ LAAPTGKAAARL +S Sbjct: 213 ACALALRGHMSVITGGPGTGKTYTAARLLALLFATAPDAAQLRVALAAPTGKAAARLKQS 272 Query: 216 LGKALRQLP------LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 + +L +L L E + A TLH LL A+P ++R HHAGNPL +DVL+VD Sbjct: 273 IDSSLLELKEAVGRELDLEALVKRMGAARTLHSLLRARPDTRRFAHHAGNPLDVDVLIVD 332 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQ 328 EASMI L MM+ L+ ALP AR+I LGD+DQLASVEAGAVLGD+C A G + + A Sbjct: 333 EASMIHLEMMAALLQALPPTARLILLGDKDQLASVEAGAVLGDLCRDAQRGNYAPDTAAY 392 Query: 329 LSRLTGTHVPAGTGTEAA--SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 + R+TG +PA A L +L++S RFG IG LA A+N GD + + Sbjct: 393 VERVTGQSLPAQYLAPARALPLAQHTVMLRESRRFG--GPIGLLAQAVNAGDAPSAMALL 450 Query: 387 QQDFTD--IEKRLLQSGEDYIAMLEEALAG------YGRYLDLLQA-------------- 424 + + + G + A++ A+ G Y Y ++L Sbjct: 451 RTQTQAGLHAELWAREGGEVEAVVRSAVQGRGGMASYAAYAEVLAQHGQGKGCGFATEAE 510 Query: 425 -RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 R ++ AF+ Y+LLCA+R+G +GVAGLN +EQ +Q I + WY GRPVM Sbjct: 511 HRQWVREVLAAFDRYRLLCAVRDGSWGVAGLNRAVEQALQAMGAIRK--EGEWYMGRPVM 568 Query: 484 IARNDSALGLFNGDIGIALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 + RND+ LG+FNGDIG+AL RV+F + + V +RL ET +AMTVHK Sbjct: 569 VTRNDAQLGVFNGDIGMALPSFADPARLRVYFMQGE-LLHHVSTARLAHVETAFAMTVHK 627 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAIATRTERRSG 599 SQGSEF+H AL+L +Q V++RELVYT +TRAR+ SL+ + +L +A+ + T+R SG Sbjct: 628 SQGSEFEHTALVLAAQGGNVLSRELVYTGITRARKAFSLWTEVPGLLVSAMGSPTQRSSG 687 Query: 600 L 600 L Sbjct: 688 L 688 >UniRef50_A3MYX5 Exodeoxyribonuclease V alpha chain n=11 Tax=Pasteurellaceae RepID=A3MYX5_ACTP2 Length = 645 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 238/646 (36%), Positives = 345/646 (53%), Gaps = 50/646 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTV---------AGDEHPAVTLAAALLSHDAGEGHVCL 53 + L E E + LD QFA + + L AAL+S +GH + Sbjct: 1 MLTLLYELKETNVISELDYQFAKMIDRKQQSYPYTEQQKNLAVLLAALVSFHVMQGHAAI 60 Query: 54 PLSR--------LENNEASHPLLATCVSEIGEL--QNWEECLLASQAVS-RGDEPTPMIL 102 L L N L + +IG + W+ L A S + PM+ Sbjct: 61 RLDSQASRFFFGLSNRNEEKALNDEILQKIGGITPLEWQGVLQNHIAFSSDPKQVAPMLF 120 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEV--DEALLAQTLDKLFPVSDEINWQKVAAAV 160 LY R W E +A + + E + AL Q L+KLF SDE+NWQK+A A Sbjct: 121 QHGLLYFYRYWQAENNIANYLVKAVEFPEQIANTALDKQILEKLFEKSDEVNWQKIAVAT 180 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQ---MADGERCRIRLAAPTGKAAARLTESLG 217 A+ ++ S+ISGGPGTGKTTTVAKLLAAL + + + L APTGKAAARL ES+ Sbjct: 181 AIKQKFSIISGGPGTGKTTTVAKLLAALQEKQLRSGKAMLNVALVAPTGKAAARLKESIT 240 Query: 218 KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 +L L L E IP AST+HRLLG +P S R+H+ NPLH+D+LVVDEASMIDL Sbjct: 241 LSLSVLNLNFE----IPTTASTIHRLLGIRPQSDEPRYHSKNPLHIDLLVVDEASMIDLF 296 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 +M +L+ AL + R+I LGD+DQLASVEAGA++G++ A+ G++ + L+++T + Sbjct: 297 LMEKLMAALKPNTRLIILGDKDQLASVEAGAIMGELGAFLQQGYSRKHCDYLNQVTEYQL 356 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 ++ + DSLC L+KSYRF ++SGIGQLA +N +F + D+ Sbjct: 357 --VPKGKSLPICDSLCHLKKSYRFDANSGIGQLAKLVNEKQAVESWQLFAKGSADLSLIE 414 Query: 398 LQSGEDYI-----------AMLEEALAGYGRYLDLLQARAEP------DLIIQAFNEYQL 440 D+ + ++A+ Y YL L++ R + I + F + + Sbjct: 415 YAHTSDFPEKQQWIQNCVKQITDKAVELYKEYLTLVKQRYNNPTKVSVNEIFEVFQKVRF 474 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L ALR GV LN+RIE + + I +Y G+P++I +N +++GDIGI Sbjct: 475 LSALRISELGVEQLNKRIETALAAAKLISLEQSKNYYIGKPLLITQNSPQNHIYSGDIGI 534 Query: 501 ALDRGQG-TRVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 L G +RV+F D S+ +RLPE E + MTVHKSQGSEF+H LI P Sbjct: 535 ILPDENGISRVYFDTKIDDGYLSLSLNRLPEFEPAYVMTVHKSQGSEFEHTLLITPLHFA 594 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 PV+++EL+YTA+TRA++ +L+ ++++ A+ +R+SGL A Sbjct: 595 PVMSKELIYTAITRAKKHFTLFGEKQVWLQAVNNNLQRQSGLKAQL 640 >UniRef50_Q3IJ15 Exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=3 Tax=Alteromonadales RepID=Q3IJ15_PSEHT Length = 671 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 239/632 (37%), Positives = 345/632 (54%), Gaps = 33/632 (5%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAG------DEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59 L + ++R +DV+ A ++ + H + LL H CL LS ++ Sbjct: 38 LLTYLLSENRIRIVDVKLAEMLSKSNSDSENTHNEMFYLVLLLCLSQQSQHSCLTLSEVD 97 Query: 60 NNEA----------SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYL 109 + + + +S E N+E+ L Q + P+ L RLY Sbjct: 98 WSNPFNLRRSDFSKTQGSVPDKLSPFSEGFNYEQVLSYLQNHTSVGANKPLQLFNQRLYF 157 Query: 110 NRMWCNERTVA-RFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRI 166 R+ E+T+A R + ++ LLA L++ F I +WQKVA A+A T+ Sbjct: 158 ARLAGYEQTLASRLITMSERTLNINNELLAALLNEYFTPDANIATDWQKVACAIAATKGF 217 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 225 SVI+GGPGTGKTTTV KLLA L + I+L APTGKAAARL+ES+ A +L + Sbjct: 218 SVITGGPGTGKTTTVTKLLAILQSLYKTAPLSIKLVAPTGKAAARLSESILGAKDKLTNI 277 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 + + IPE A T+HRLLG +P + + RH+ NPLHLDVL++DEASM+DL +M++LI+A Sbjct: 278 PADIRTLIPESAQTIHRLLGVKPFTNKFRHNKANPLHLDVLIIDEASMVDLSLMAKLIEA 337 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICA----YANAGFTAERARQLSRLT--GTHVPA 339 LP HAR+I LGD+DQLASV+ G+V+ D+C G++ R +L+ L G Sbjct: 338 LPAHARLILLGDKDQLASVDTGSVMSDLCQGLVLGQTPGYSPARCDELNNLCFNGEAKLI 397 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD----FTDIEK 395 A L D + LQ SYRF + SGIGQLA A+N + + V Q+ F D+ Sbjct: 398 AQSNSAFKLADCIAFLQHSYRFDAQSGIGQLALAVNTNNTGVLNYVEQESVEGRFKDVIL 457 Query: 396 RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 + +++ A + Y YL L+ A + +AF YQLL A+REG +GV LN Sbjct: 458 DYDFIAKPIEKLVKSAASKYTHYLSLIAQGASVAEVHKAFASYQLLAAVREGDYGVNSLN 517 Query: 456 ERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAM 514 +RIE+ +QQ+ I P+ R Y G P+M+++ND L LFNGDIGI + D + F Sbjct: 518 QRIERVLQQQGLITLSPNQRHYTGMPIMVSQNDYQLKLFNGDIGILMPDESGQLKALFID 577 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS--QRTPVVTRELVYTAVTR 572 GN ++ P+RLP H+ + MT+HKSQGSEF + A++LP Q + R+LVYT +TR Sbjct: 578 EQGNQRAFSPARLPAHDKVYVMTIHKSQGSEFSYTAMVLPPLKQARMGINRQLVYTGITR 637 Query: 573 ARRRLSLYADERILSAAIATRTERRSGLAALF 604 A+ L AD+++L A+ R SGL Sbjct: 638 AKNTFELVADKKVLLLAMNKSVSRASGLYERL 669 >UniRef50_P45158 Exodeoxyribonuclease V alpha chain n=19 Tax=Pasteurellaceae RepID=EX5A_HAEIN Length = 640 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 230/649 (35%), Positives = 335/649 (51%), Gaps = 56/649 (8%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDE---------HPAVTLAAALLSHDAGEGHVCL 53 + L + E + L D FA +A + L AAL S +G+ C Sbjct: 1 MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCS 60 Query: 54 PLSR--------LENNEASHPLLATCVSEIGEL--QNWEECLLASQAVSRG--DEPTPMI 101 L R L LA +IG L ++W+ L A ++ ++ PM Sbjct: 61 QLDRYLEHNLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMA 120 Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNH---AIEVDEALLAQTLDKLFPVSDE-INWQKVA 157 LY R W +E + ++ + + Q L+K FP E +WQKVA Sbjct: 121 FQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIHQKLEKYFPEKQEKTDWQKVA 180 Query: 158 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 A A+ S+I+GGPGTGKTTTV +LL L ++ D + I+L APTGKAA+RL ES+ Sbjct: 181 VATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFDCK-LHIKLVAPTGKAASRLEESIK 239 Query: 218 KAL----RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 AL ++ ++ IP+ ASTLH LLG + R+++ NPL LDVLVVDE SM Sbjct: 240 NALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSM 299 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 IDLPMM++LI+AL R+I LGD+ QLASVEAGAVLG++ + ++ E+A L T Sbjct: 300 IDLPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATT 359 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 G V + +RD LC L +S RF DSGIG+L+ I +G +F ++ Sbjct: 360 GYKVEGSDCSN--PIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLELFDHYPQEL 417 Query: 394 EKRLLQS-GEDYIAMLEEALAGYGRYLDLL---------------QARAEPDLIIQAFNE 437 L G+ +++ A+ Y +L +L Q + + I FN Sbjct: 418 HFNSLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNS 477 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 + L ALR GV LN+ I +++++ + WY G+P+MI ND + L+NGD Sbjct: 478 VRFLTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGD 537 Query: 498 IGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 IG+ L G +VWF + V +R+P HE + MT+HKSQGSEF H ++LP++ Sbjct: 538 IGLCLANG---KVWFGN-----REVLTNRIPAHEPAFMMTIHKSQGSEFKHTVMVLPTEV 589 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 PV++RELV+T VTRA++ L+++ADE+I AI +R+SGL L Sbjct: 590 NPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLED 638 >UniRef50_B1XZ26 Exodeoxyribonuclease V, alpha subunit n=4 Tax=cellular organisms RepID=B1XZ26_LEPCP Length = 739 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 264/692 (38%), Positives = 360/692 (52%), Gaps = 104/692 (15%) Query: 14 KQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLS-------------- 56 LR LD+ A + D + LAAALL+H+ G GH CLPL Sbjct: 51 GWLRALDLSLARLLVQQCPDASAHLALAAALLAHNEGRGHTCLPLDEWLASVDEAAAPTA 110 Query: 57 ------------RLENNEASHPLLATCVSEIG-ELQNWEECLLASQAVSRGDE------P 97 L+ + LA + +G + W LL S AV+ E Sbjct: 111 PGGSHARPLTEPWLDGPADAQAALARQLRALGTDPGEWRAALLCSGAVAAAGEIVATGLA 170 Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAI-----------------EVDEALLAQT 140 +P+IL G RLYL R + +E+ VA+ A D A + Sbjct: 171 SPLILSGSRLYLRRHFRDEQAVAQAVVGRAAAAMPVAEGAPQAQPHAGTEPPDAAQVRLW 230 Query: 141 LDKLF---PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER- 196 LD+LF P D +WQ+ A A+AL R+++I+GGPGTGKT TVA+LLA ++ + + Sbjct: 231 LDRLFGGPPAPDRFDWQRSACAIALRGRLALITGGPGTGKTYTVARLLALVMAVHPQPQA 290 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDE------QKKRIPEDASTLHRLLGAQPGS 250 RI LAAPTGKAAARL +S+ AL+QL ++ + TLH+LLGA+P + Sbjct: 291 LRIALAAPTGKAAARLKQSIDSALQQLAAALPGALDWGLLQQRLSQSLTLHKLLGARPDT 350 Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 +R A +PL +D+LVVDEASM+ L MM+ L+ ALP +R++ LGD+DQLASVEAGAVL Sbjct: 351 RRFGRDARHPLEVDLLVVDEASMVHLEMMAALLAALPPASRLVLLGDKDQLASVEAGAVL 410 Query: 311 GDIC-AYANAGFTAERARQLSRLTGTHVP-AGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 GD+C A G+ + A + G +P + L +L++S RF + IG Sbjct: 411 GDLCVDAAAGGYDEDTAAWIQACVGQALPQPFRCGQPGPLAQQTVMLRESRRF--EGPIG 468 Query: 369 QLAAAINRGDKTAVKTVFQ---QDFTDIEKRLLQSGEDYIAMLEEAL----------AGY 415 LA A+N GD TA + + D +G A+ + A+ G+ Sbjct: 469 ALALAVNAGDVTAARRLLGLGVPAPADDGSLRAPTGVTPAAVCDLAVHGRAGNDASATGF 528 Query: 416 GRYLDLLQARAEP----------DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 YL LL+ A ++QAF ++LCA+REG +GVAGLN IE+ ++Q+ Sbjct: 529 VNYLRLLREGAPRRADGPSPDGVRAVLQAFERCRVLCAVREGEWGVAGLNAAIERQLRQQ 588 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD----------RGQGTRVWFAMP 515 I R WYEGRPVM+ RND ALG+FNGDIG+AL G RVWF + Sbjct: 589 GWIARQG--EWYEGRPVMVTRNDPALGVFNGDIGLALRGPAQPGGAQGAGGPLRVWF-LD 645 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 +SV SRL ET +AMTVHKSQGSEF+H L+LP PV+TRELVYT +TRARR Sbjct: 646 GEQPRSVLASRLAAVETAYAMTVHKSQGSEFEHTVLVLPPHANPVLTRELVYTGITRARR 705 Query: 576 RLSLYA-DERILSAAIATRTERRSGLAALFSS 606 +L A + + A+ RT R SGL L ++ Sbjct: 706 AFTLVAPEPAVFDLALQRRTRRASGLPDLLAA 737 >UniRef50_Q1NL94 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Deltaproteobacteria RepID=Q1NL94_9DELT Length = 645 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 207/628 (32%), Positives = 310/628 (49%), Gaps = 42/628 (6%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLE 59 L L + + + D +A +A + PAV LA L +GHVC+ L + Sbjct: 34 LANILHHWRQRELIAEFDRHWAALLARLDPAASPAVLLAGTLARRAVDQGHVCVDLEAIC 93 Query: 60 NNEASHP---------LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLN 110 + + + + + + TP++L LYL Sbjct: 94 GQQWPADGDEKIRWPAAKSLASALAASSLVARQAMGDERQDGSETANTPLVLADKLLYLR 153 Query: 111 RMWCNERTVARFFNEVNHA------IEVDEALLAQTLDKLFPVS--DEINWQKVAAAVAL 162 R W E +A F + + A+ L L S + Q+ A A Sbjct: 154 RYWQYESDLAAFIRQRAAPQGVTATPQAPPGQPAEQLAALAAGSGVELAAEQQRAVLAAC 213 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG-KALR 221 +R+++VISGGPGTGKTT + +L AL Q R+ L APTGKAAARL +++ K Sbjct: 214 SRQLTVISGGPGTGKTTIIFFIL-ALSQRLATTPPRVLLLAPTGKAAARLGQAVREKKEE 272 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEASMIDLPMMS 280 +PE+A T+HR LG QP S R A NPL D++VVDEASM+D+ ++S Sbjct: 273 LAATAAVALAELPEEAMTIHRALGYQPASPTIFRRRADNPLAADLVVVDEASMVDIALLS 332 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 +L A+P AR++ LGD+DQLASVEAG++LGDICA A++ + + L Sbjct: 333 KLFAAVPATARLVLLGDQDQLASVEAGSILGDICAAASSPESEPPGATTAPL-------- 384 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT-DIEKRLLQ 399 + SL + L++ +RF GIG L A+ G A V D + ++ + L Sbjct: 385 --AQQGSLAAGVVTLRRGFRFDPGRGIGALVDAVRAGQPEAALQVLANDQSGEVVCQPLA 442 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 A + ++G+ L P + +++LL A R G GV LN Sbjct: 443 EPGADPAFAQLLISGFRAAL----TATSPAQALAHLADFRLLAAHRRGAAGVEELNRCCR 498 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA---LDRGQGTRVWFAMPD 516 + Q + WY G+P++I ND L LFNGD+G+ + R +F+ + Sbjct: 499 HILHQAGLLPAAAG-PWYRGQPLLITANDYNLRLFNGDLGVIWESTEDDGELRAFFSSAE 557 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 G ++S+ PSRLP HET +AMT+HKSQGSEF+ A++LP + +P++TREL+YTA++RARR+ Sbjct: 558 GRLRSLSPSRLPAHETAFAMTIHKSQGSEFEQVAVVLPGEASPLLTRELLYTAISRARRK 617 Query: 577 LSLYADERILSAAIATRTERRSGLAALF 604 + L+A +++ AI R R SGLAA Sbjct: 618 VLLFATPAVIAEAIGQRVRRTSGLAARL 645 >UniRef50_Q3B471 DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B471_PELLD Length = 586 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 236/612 (38%), Positives = 321/612 (52%), Gaps = 44/612 (7%) Query: 8 LEAVEHKQLRPLDVQFALTV----AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 ++ + ++ RP+D QF + G + + A+L+S G VCL L + E Sbjct: 1 MKYIRYEDERPIDRQFGGFIMRLSTGPGKGVLRVLASLVSRALEGGDVCLDLQSVAGREI 60 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVARF 122 + E+ EL + L S VS G P++ G LYL R E +AR Sbjct: 61 MTGEEHVSIPELPEL---LDVLSRSGVVSDGGGNLPLVKGRGSLLYLQRYHVAESGLARA 117 Query: 123 FNEVNHAIEVDEALLAQT--LDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKT 178 + D A+T L +LFP D Q+ AA AL RR SVI+GGPGTGKT Sbjct: 118 ILNRCLEPQGDPEKEARTALLLQLFPAESEDGGGMQRAAALQALRRRFSVIAGGPGTGKT 177 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TTV K+LA L RI +AAPTGKAA RL+ S+ L TD ++ IP++AS Sbjct: 178 TTVVKILALLAGEDGTGGGRIAMAAPTGKAALRLSGSVRMQKAALHCTDAARRAIPDEAS 237 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 TLHRLL A PG+ R RH NPL D +VVDEASM+ LP+M AL R+I LGD Sbjct: 238 TLHRLLQAVPGTGRFRHGPLNPLPYDTVVVDEASMVALPLMHAFFSALSPSCRLILLGDP 297 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQLASVEAGAVLGDICA A ++L S+ +L+++ Sbjct: 298 DQLASVEAGAVLGDICAAARLP------------------------GSALHGSVTVLERN 333 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD--IEKRLLQSGEDYIAMLEEALAGYG 416 YRF S I LA A+N G + D + + + + + EE Sbjct: 334 YRFDGGSDISDLARAVNGGRVEESLGLLAPDRGNGVVLRPPYVGWNERDGVPEELADAIM 393 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGP--FGVAGLNERIEQFMQQKRKIHRHPHS 474 +P + AF+ +++L A+ +GP GV GLN EQ +++ I P S Sbjct: 394 EGYRPFLEAGDPPSALLAFDRFRMLGAIGDGPGLSGVRGLNMAAEQVLRRAGLID--PSS 451 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQ--GTRVWFAMPDGNIKSVQPSRLPEHET 532 +Y GRPVM+ ND ++ LFNGD GI + + VWF PDG++++V P RLP+HET Sbjct: 452 PFYHGRPVMVRENDYSMRLFNGDTGIVFNDPECDAPLVWFNAPDGSLRAVAPERLPKHET 511 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 +A+T+HKSQGSEFD ++LP Q +P+++REL+YTA+TRARR + + AD LSAAI Sbjct: 512 AYAVTIHKSQGSEFDAVLMVLPRQDSPLLSRELLYTAITRARRSVEIRADPEALSAAIRK 571 Query: 593 RTERRSGLAALF 604 T R SGL Sbjct: 572 GTARVSGLKDAL 583 >UniRef50_C3X2X3 DNA helicase n=2 Tax=Oxalobacter formigenes RepID=C3X2X3_OXAFO Length = 624 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 239/594 (40%), Positives = 330/594 (55%), Gaps = 28/594 (4%) Query: 24 ALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE 83 A + + AA +S G+ CL L+ L + E ++ E Sbjct: 35 ASPLDRPGEALLKEAAYRVSLAVSSGNACLALAELAGS-----------GEGVSPESIRE 83 Query: 84 CLLASQAVSRGDEP--TPMILCGD-RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 LLAS V+ +P P+IL GD RLYL+R + ER +A N +VD AL+ Sbjct: 84 TLLASGVVAEAADPGNAPLILDGDERLYLHRYFDYERALAECIAARNVPGKVDAALIRPL 143 Query: 141 LDKLFPVSDE--INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 LD LFP +WQK A A+AL ++SGGPGTGKTTTVA LLA L++ R Sbjct: 144 LDILFPSGKGKPFDWQKAAVALALREPFLIVSGGPGTGKTTTVASLLACLLETDPEN--R 201 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTGKAA R+ E++ + PL + IP++A T+HRLLG +R HA Sbjct: 202 IVLAAPTGKAAMRMLEAISQRSSLFPL--HMQPLIPKEARTVHRLLGMTGDRGSVRFHAT 259 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL LD L+VDEASM+DL M SRL ALP HARVI LGD+DQLA+VEAG+V ++ Sbjct: 260 NPLPLDTLIVDEASMLDLAMASRLFAALPAHARVILLGDKDQLAAVEAGSVFSEL--SGK 317 Query: 319 AGFTAERARQLSRLTGTHVPAGTGT---EAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 F+ L +LTG P + +A L + + L ++YRF DSGIG+LAA I Sbjct: 318 RVFSEACLADLEKLTGLRPPPSLSSPSGQATPLENRVVWLTRNYRFSEDSGIGKLAADIR 377 Query: 376 -RGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR-AEPDLIIQ 433 R + A+ + + E + + Y Y D L+ +P + + Sbjct: 378 MRRSEEALDFLCSGKDASVVWFDTADTEVASRLETTLVTAYRDYFDCLENHPHDPVRVFR 437 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGL 493 AF+ +++LCA+REGP GV +N I + + + + + W+ GRPVMI RND AL L Sbjct: 438 AFSRFRILCAVREGPCGVKAVNRLIAAHLSKTGRAGQSASADWFAGRPVMIRRNDYALRL 497 Query: 494 FNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 FNGD+GIAL G V+F DG +++ PSRL EHET++AMTVH+SQGSEFD AL+ Sbjct: 498 FNGDVGIALPDASGRLAVFFPKEDGTFRALSPSRLGEHETSFAMTVHQSQGSEFDSVALL 557 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 LP+Q + V+ RELVYT +TRAR ++++ A + +L+ ++ R SGL Sbjct: 558 LPAQFSRVLCRELVYTGITRAREKIAVMAPKTVLAESLKNNAVRHSGLPERLRE 611 >UniRef50_C7LVF6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF6_DESBD Length = 588 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 240/607 (39%), Positives = 317/607 (52%), Gaps = 30/607 (4%) Query: 5 KQLLEAVEHKQLRPLDVQ---FALTVAGDEHPAVTL-AAALLSHDAGEGHVCLPLSRLEN 60 L D+ FA ++A + H + AL+S EGHVCL L Sbjct: 6 AILPRLAASTLFSEADLYQARFAASLAREGHANLVAGLTALVSLAVREGHVCLHL----G 61 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 +E LA + + V P+IL G+RLY +R + +E +A Sbjct: 62 DEGVRERLAALGLDGT------HACQLTGVVGAPGSGLPLILDGERLYFSRFFRDEEALA 115 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPV-SDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 R F + A D + A L +F DE +WQ VA AL R+ VISGGPGTGKTT Sbjct: 116 RAFMRLAGAPPRD--IPADLLPDIFKTKGDETDWQDVACFAALRSRLCVISGGPGTGKTT 173 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 TVA++LA +M G RIRLAAPTGKAA+R+TE+L +A + E + + A T Sbjct: 174 TVARILALASRMHTGANFRIRLAAPTGKAASRMTEALAEAFPEGSQLPELNACLAQGAQT 233 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +HRLLG G RH GNPL LD+LVVDEASM+DL + +RL+DALPD A ++ LGDR+ Sbjct: 234 VHRLLGWSSGG--FRHCQGNPLPLDMLVVDEASMLDLELAARLMDALPDEASLVLLGDRN 291 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QLASVEAGAVL ++C + + G TG L D + L+KS+ Sbjct: 292 QLASVEAGAVLANLCREDIVNAFSPDFTAYAAKAGAQGLTATGIPV-PLTDHVVELKKSW 350 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 RFG SGI L+ I G + + TD+E + A L L R L Sbjct: 351 RFGQHSGIAALSTLIRDGQAQMAGELLVEGRTDLEMLPCTGQANLTATLTPLLREAFRGL 410 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 +P + F +LL +R+GP G LN + + H + WY G Sbjct: 411 G---GTTDPTRAFEIFGTLRLLSPVRKGPRGTEALNRLAREAL------HESASNYWYPG 461 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 RPVMI ND LGLFNGD+GIAL RV+FA +G ++S P+RLP HET +AMTVH Sbjct: 462 RPVMILENDYNLGLFNGDVGIALHVEGTLRVFFAGTEG-LESHSPARLPRHETCYAMTVH 520 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSG 599 KSQGSEF H LILP + PV+ REL+YTA+TRA++R +L + AI + R SG Sbjct: 521 KSQGSEFGHTVLILPEEPCPVLGRELLYTALTRAKKRFTLLGTAEQVKDAIESPARRDSG 580 Query: 600 LAALFSS 606 L + +S Sbjct: 581 LGEMLTS 587 >UniRef50_Q6MDD6 Putative exodeoxyribonuclease V n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDD6_PARUW Length = 721 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 146/594 (24%), Positives = 248/594 (41%), Gaps = 82/594 (13%) Query: 24 ALTVAGDEHPAVTLAAA---LLSHDAGEGHVCLPLSRLENNEASHPLL-ATCVSEIGELQ 79 A + + + A +LS +G+GHVC P+ +H + A + + E Sbjct: 199 AQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEAETHLEVKADLIEKRLEGL 258 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQ 139 EE ++ +Q + G + D +++ ++ E +AR + + + ++ + Sbjct: 259 QSEERIILAQLIHEGKKR-------DFIWIKPLFIAETGIARELKRLKNGVSTFRSINKE 311 Query: 140 TLDKLFPVSDEINW---QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER 196 + +I QK A A A++ ++ +I+GGPGTGK+T +L Q+ Sbjct: 312 KAVEWVQAQLKIELAPNQKEAVAKAISTKLHIITGGPGTGKSTITNAIL----QITAILT 367 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGS-QRLRH 255 +I LAAPTG+AA R++E + AST+H LL S + Sbjct: 368 QKILLAAPTGRAAKRMSEITKR-----------------KASTIHSLLEYDFKSTGGFKR 410 Query: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 + NPL D++++DEASMID +M L+ ALPDH RVIF+GD QL SV G VL D+ Sbjct: 411 NRENPLDCDLIIIDEASMIDTFLMYSLLKALPDHTRVIFVGDIHQLPSVGPGNVLSDMI- 469 Query: 316 YANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 SL S+ L++ +R + S I A +N Sbjct: 470 ------------------------------TSLTISVTTLKEIFRQAAGSHIITNAHRVN 499 Query: 376 RGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAF 435 +G ++ DF IE + E + L+ R Sbjct: 500 KGMFPSLYNGQNSDFFFIECQ-------------ENEEVLNTIVKLVSQRLPNRYGFNPN 546 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 + Q+L +++G G LN+ ++ + K ++ G VM RND +FN Sbjct: 547 QDIQVLAPMKKGLIGTEHLNQSLQMILNPKEHALFRGGQKFQVGDKVMQIRNDYQKEVFN 606 Query: 496 GDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 GDIG L+ + + + L E +A++VHK QGSE + + + Sbjct: 607 GDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDELILAYAISVHKFQGSECPCVVMPVHT 666 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAALFSSR 607 ++ R L+YT +TR ++ + L ++ L+ A+ +R + L Sbjct: 667 SHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKRYTSLQNALMEI 720 >UniRef50_A3WKH6 ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase n=1 Tax=Idiomarina baltica OS145 RepID=A3WKH6_9GAMM Length = 633 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 219/636 (34%), Positives = 335/636 (52%), Gaps = 53/636 (8%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTV--AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 L+ E EH+ +R LD + +G+ + A+ A L SH AG G L L L+ Sbjct: 9 LRAIADEWFEHEWIRALDRAMVDFLFRSGETNVAMLALAMLTSHQAGRGLTSLKLEDLKA 68 Query: 61 NEASHPLLATCV--SEIGELQNWEECLLASQ-----AVSRGDEPTPMIL----CGDRLYL 109 + L ++ L + +VS + +P++L G+RLYL Sbjct: 69 SPERCLALPPSGRSHDVTLPSKLLNELSVFEGDWQTSVSLNSDSSPLVLNKSSDGERLYL 128 Query: 110 NRMWCNERTVARFF-NEVNHAIEVDEALLAQTLDKLF-PVSDEINWQKVAAAVALTRRIS 167 R W E ++ +++ +EV++ L TLD LF S +++WQ++A A A S Sbjct: 129 RRYWYCEHYNSQNLEMRMDNTLEVNDDQLNMTLDALFGDTSKQLDWQRMACANAARSAFS 188 Query: 168 VISGGPGTGKTTTVAKLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 VI+GGPGTGKT TV +LL L Q A G RI+LAAPTGKAAARL+ES+ +AL +L Sbjct: 189 VITGGPGTGKTYTVVRLLVVLQQQFQQAHGRPLRIKLAAPTGKAAARLSESINEALSELQ 248 Query: 225 LT-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 I +AST+H+LLG S+R RHH NP+ D++V+DEASM+D+ MM Sbjct: 249 TKLPETLQPLLATIQIEASTVHKLLGVIANSRRYRHHEKNPVRADLIVIDEASMLDIEMM 308 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 + L+ A P A+++ LGD+DQLASVEAGAVLG++C A G + ++ L TH Sbjct: 309 TALLQATPTQAQLVLLGDKDQLASVEAGAVLGNLCEGAEKG--GYWSSTINSLASTHAQR 366 Query: 340 GTGTE-----AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE 394 + + +L+++ RF + I +A +IN + A++ F ++ + Sbjct: 367 DALIQYQDEAGPKRLQHVVMLRQTRRF--EQAIADVANSINDQNTRAIEHFFSAPVSEYD 424 Query: 395 KRLL-------QSGEDYIAMLEEALAGYGRYLDLLQ----ARAEPDLIIQAFNEYQLLCA 443 ++ + + ++++ + Y R L+ + + + ++ A+ +QLL Sbjct: 425 SNIVTWLMLEHDRQDSFDLLIKQGFSHYLRALEQWREAPAEQRDTAAVLDAYATFQLLTG 484 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 LR GP+G LN + + RWYEGRPVM+ +ND L L NGDIG+ Sbjct: 485 LRNGPWGAHALNRYVADVLG-------VEADRWYEGRPVMVTKNDYGLRLNNGDIGVTFR 537 Query: 504 RGQGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 + R+ A D G +K V PSRL ET + MTVHKSQGSEF H L+ P +PV+ Sbjct: 538 MPETGRLRVAFFDSHGKVKWVLPSRLNHVETVYVMTVHKSQGSEFAHTVLVTPQHDSPVL 597 Query: 562 TRELVYTAVTRARRRLSLYADER-ILSAAIATRTER 596 T+EL+YT VTRA+++L+L ++ + A++ R R Sbjct: 598 TKELLYTGVTRAKKKLTLVVSKKSVFLNAVSKRINR 633 >UniRef50_Q15V09 DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V09_PSEA6 Length = 737 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 249/710 (35%), Positives = 354/710 (49%), Gaps = 118/710 (16%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVT----------LAAALLSHDAGEGHVCLPL 55 L + ++RPLDV FA + E + L AA LS GE CL L Sbjct: 33 ILQSLLSVGRIRPLDVAFAEFIMLHERNKLAVNTAGIHALGLLAAYLSSRLGEQDSCLNL 92 Query: 56 SRLEN------NEASHPLLATCV------------------------------------- 72 S P+L + + Sbjct: 93 DGFYQPFLPFYRFDSAPVLMSILEASSCVSVVEEPRFNQASDAVAGSDTRSDTGNNTSSH 152 Query: 73 ------SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 + Q + L QA + P+IL G LY+ R W E +A N + Sbjct: 153 DRYSSAQHLPAQQLSAKQLHTHQAQEHQSQSKPLILQGHELYMQRYWQYEVQLAEKINSM 212 Query: 127 N-HAIEVDEALLAQTLDKLF-------------------------PVSDEINWQKVAAAV 160 +D L +LF EI+WQKVA + Sbjct: 213 TGRTSTLDIEQGRALLGQLFVSAPDDVGDERDLNDVNRQSGHGHAQREPEIDWQKVAVCL 272 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGK 218 A ++ +SVI+GGPGTGKTTTV +L+A L +A G++ +I+LAAPTGKAAARL++S+ Sbjct: 273 AASQSVSVITGGPGTGKTTTVIRLMALLQGLARHKGKKLQIKLAAPTGKAAARLSQSISA 332 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 A+ +LP D K +P ST+HRLLG+ P S R + +PLH+DVL+VDEASM+DLP+ Sbjct: 333 AMDKLP--DALKPDLPSQCSTIHRLLGSIPNSPYFRFNQQHPLHVDVLIVDEASMVDLPL 390 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA----------NAGFTAERARQ 328 MS+L ALP HA+++ LGD+DQLASVEAG+VL DIC+ A + ++ + Sbjct: 391 MSKLFAALPRHAKIVLLGDKDQLASVEAGSVLSDICSAALNFSPTVFNQSPPYSDQALGV 450 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 + L + T +A + +SL LL KSYRF SGIG+LA AIN G K +F Sbjct: 451 VKDLCQIELNINTLNKA-PISNSLALLHKSYRFSEKSGIGRLARAINMGRLANAKALFSD 509 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD-------LIIQAFNEYQLL 441 D + + Q+ +D A++ L Y RY + ++ + + Q+L Sbjct: 510 DVY--QDVVWQTSDDPKALVNRLLPDYQRYFERVRQVCARGTLSTQGIEVFALLQQQQVL 567 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CA +E +GV +N IE + + I +Y GRPVM+ +ND +LGLFNGDIGIA Sbjct: 568 CAQKEASWGVKQMNVLIESELNKHGAIEL--GRDFYIGRPVMLKQNDHSLGLFNGDIGIA 625 Query: 502 LDRGQGT---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP---- 554 + + +VWF ++ V PSRLP H+T +AMT+HKSQGSEFDH L LP Sbjct: 626 MPDEENEGLMKVWFVTEQNTLRGVLPSRLPPHDTVYAMTIHKSQGSEFDHVYLCLPRIET 685 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 + +++REL+YT +TRA++ +LY+DE+ LS ++A R +R SGLA Sbjct: 686 RSQARLLSRELLYTGLTRAKKSFNLYSDEQALSISVARRCQRGSGLAKRL 735 >UniRef50_Q0AAH8 DNA helicase/exodeoxyribonuclease V, alpha subunit n=3 Tax=Ectothiorhodospiraceae RepID=Q0AAH8_ALHEH Length = 703 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 264/682 (38%), Positives = 346/682 (50%), Gaps = 84/682 (12%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 L V+ LRPLD A+ + P + L AAL SH G GHVCL L L+ + Sbjct: 23 ALLEAWVDGGWLRPLDRALAVFLHQHVPQAPPLLLLLAALTSHQVGRGHVCLELPALQAD 82 Query: 62 EASHPLLATCVSEIGE--LQNWEECLLAS---------QAVSRGDEPTPMILCGDRLYLN 110 L G W + L + + V G +P++ RLYL Sbjct: 83 PDGTLSLPPEGGAEGAARPSRWLQGLDEAALAAALDCPELVQDGPGSSPLVRQEQRLYLR 142 Query: 111 RMWCNERTVARFFNEVNHAIE-----VDEALLAQTLDKLFPVSD--EINWQKVAAAVALT 163 R W E + + + A +D + L++LFP +WQ++A A+A Sbjct: 143 RYWDCEVRIGQALHRRMAAAADWQQGLDGEATRRWLERLFPAGGGAATDWQRLACALAAG 202 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLAAPTGKAAARLTESLGKAL 220 R +VI+GGPGTGKTTTV +LL L + RIR+AAPTGKAAARL S+ AL Sbjct: 203 RGFTVITGGPGTGKTTTVLRLLVLLQALQQAAADAPLRIRMAAPTGKAAARLNASVAGAL 262 Query: 221 RQLPLT-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 +LPL + + IP + T+HRLLGA+P S+ RH AG PL LDVLVVDEASMID Sbjct: 263 ARLPLDGVADAEALRAAIPTEVVTVHRLLGARPDSRHFRHRAGEPLPLDVLVVDEASMID 322 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRLTG 334 L +M+ L+DALP AR+I LGD+DQLASVEAGAV+G++C A+ G +T LS ++G Sbjct: 323 LELMASLLDALPPEARLILLGDKDQLASVEAGAVMGELCHRADGGHYTPATTAWLSEVSG 382 Query: 335 THVPAGTGTEAA-SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD--KTAVKTVFQQDFT 391 VPA A L + +L+ S+RFG+DSGIG LA A+N GD Sbjct: 383 ESVPADYRDPAGRPLDQHIVMLRHSHRFGADSGIGALARAVNGGDAAAVEALWAAGASHP 442 Query: 392 DIEKRLLQSGEDYIAML---------------EEALAGYGRYLDLLQARAEPD------- 429 DI + L ED E GY YL+ + D Sbjct: 443 DIARLHLAGPEDPALEALAVAGGADHFAAGASGEGPRGYRYYLEAMHDGRPRDDAPRSAW 502 Query: 430 -----LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 ++QA +QLL A+R GP+GV LN+RI ++ + S WY GRPV++ Sbjct: 503 DDWARSVLQAQGAFQLLGAVRRGPWGVEALNQRIAAALRDAGLV--RATSAWYAGRPVIV 560 Query: 485 ARNDSALGLFNGDIGIALDRGQG-------------------TRVWFAMPD--GNIKSVQ 523 RND LGL NGD+G+AL +G RV F D G I+ V Sbjct: 561 TRNDYDLGLINGDMGVALAVPEGLAGGAPSDDAGRRDGARTVLRVAFLASDGSGRIRWVL 620 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 PSRL + ET +A+TVHK+QGSEF HAAL+LP + PV+TREL+YT +TRA SL Sbjct: 621 PSRLEQVETAYALTVHKAQGSEFRHAALVLPDRVAPVLTRELLYTGITRASDWFSLLEPP 680 Query: 584 -RILSAAIATRTERRSGLAALF 604 +L AI RT R GL Sbjct: 681 GGVLVRAIRQRTLRSGGLRTRL 702 >UniRef50_B4X4Z2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4Z2_9GAMM Length = 688 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 255/601 (42%), Positives = 337/601 (56%), Gaps = 43/601 (7%) Query: 17 RPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLS--RLENNEASHPLLATC 71 R LDV A + A V L AA S+ GH+CL L L Sbjct: 25 RDLDVAIARFLNQQCPQASYPVLLLAAFTSNQQASGHLCLDLKNRELATQLWGTSPPPEL 84 Query: 72 VSEI-GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAI 130 VS + G+ +W L S VS+ D TP++L G RLYL R W E +VA ++ + Sbjct: 85 VSLLPGKPDDWLHDLQHSPLVSQ-DGSTPLVLDGSRLYLRRNWAREVSVAEAISQRLATV 143 Query: 131 -EVDEALLAQTLDKLFP-VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + L L +LFP D+ +WQ+VA A+A I +I+GGPGTGKTTTV +LL L Sbjct: 144 SPLPAERLRDALARLFPNAGDQTDWQQVACALASRSGIGIITGGPGTGKTTTVVRLLGLL 203 Query: 189 IQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 +A + +R RIRLAAPTGKAAARLTES+G+ + +L + + IP + +TLHRLLG Sbjct: 204 QSLAMTENQRLRIRLAAPTGKAAARLTESIGEQVEKLEVETAVRDAIPTEVTTLHRLLGT 263 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 +P S+ RHHA NPLH D++VVDEASMID+ MM+ L++AL H R+I LGD+DQLASVEA Sbjct: 264 RPDSRHFRHHADNPLHADLVVVDEASMIDMDMMASLLEALSPHTRLILLGDKDQLASVEA 323 Query: 307 GAVLGDICAYANAGFTAERARQLSRLT-GTHVPAGTGTEAAS---LRDSLCLLQKSYRFG 362 GAV+GD+C +A+ G + + R T G + TE A L +L+ ++R Sbjct: 324 GAVMGDLCRHAHQGRYQQGTIEFVRDTCGADISGYQETEQAPGNALAQQTAMLRTNWRSK 383 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS-GEDYIAMLEEALAGYGRYLDL 421 GIG+LA A+N + V+ FQQ + + L+S G+ +L + L Sbjct: 384 DSPGIGELARAVNEENLPQVRKAFQQYDDSLHRHPLRSDGQQLETLLLNGSGDHSGLRAL 443 Query: 422 LQARAEPDLIIQAFNEY-----------QLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 QA A P + F+ + QLL LR GPFGV LN+RI + +QQ+ Sbjct: 444 FQAVATPPAQREEFDGWAAALLKQLTHQQLLSGLRSGPFGVEQLNQRITRHLQQQDLA-- 501 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-------------RVWFAMPDG 517 P WY GRPVM+ RND LGL NGD+G+ L + RV F +PDG Sbjct: 502 -PEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLEEKKREERNGKPALLLRVAFQLPDG 560 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 IK V PSRL ET +AMTVHKSQGSEF H L+LP P++TREL+YTAVTRAR R Sbjct: 561 RIKWVLPSRLDGVETVYAMTVHKSQGSEFRHTLLVLPDAPHPLLTRELIYTAVTRARDRF 620 Query: 578 S 578 + Sbjct: 621 T 621 >UniRef50_C1SHH8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH8_9BACT Length = 585 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 216/588 (36%), Positives = 310/588 (52%), Gaps = 23/588 (3%) Query: 17 RPLDVQFALTVAGD-EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEI 75 R +D+ FA +A P L AL+ + G+ CL ++ E + Sbjct: 15 RDIDIYFARNLADTFGAPEGALLFALVFNVTEGGNTCLNMAEPEKISFYKSFNKEINNAF 74 Query: 76 GELQNWEECLLASQAVSRGDE-PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDE 134 E N L+ A+ P I G +Y+ + +E +V + A + Sbjct: 75 SE--NVIAGLITKGALCEAPAISAPFIKAGSSIYMKSFYSDENSVGIYIKNRVSAPYIMT 132 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + +DK FP E N QK AA SVISGGPGTGKT+TV LLA L +M+ Sbjct: 133 PETEKLIDKYFP---ENNMQKAAAINTAMNSFSVISGGPGTGKTSTVFNLLAVLAEMS-S 188 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 E +I + APTGKAAARLTES+ + + + +IPE A T+HRLLG S+ R Sbjct: 189 EPVKIAVCAPTGKAAARLTESISEKREEYK-HEAFIDQIPEKALTIHRLLGMAGDSRVPR 247 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + N L DV+V DEASMID+ M++L +AL D R+I LGD+DQLASV+ GAV+GDIC Sbjct: 248 FNKENKLPYDVVVADEASMIDVRNMAKLTEALSDDCRLILLGDKDQLASVQPGAVMGDIC 307 Query: 315 AYAN-AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 + A F+ +RA LS+ T + AG + D +L KSYR+ S++GIG LAAA Sbjct: 308 SAAPVDEFSTDRAEILSKYTTGTIKAGK----SPYADVTIMLDKSYRYDSNAGIGLLAAA 363 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG-RYLDLLQARAEPDLII 432 RGD V D T + L + E A GY R+ + + +L I Sbjct: 364 AGRGDHKTALEVLLNDTTKKVEFL-----ELDNNFETAAGGYVLRHFESYSREQDQNLAI 418 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 +AFN++++L R+ G A +N +Q + + H +Y G PVM+ ND +L Sbjct: 419 EAFNKFRILTPHRQMNGGTAHINTIAQQTLFRAG--HTDNTKHFYHGMPVMVVENDYSLN 476 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 +FNG+ G+ L + + FA I+ + P+RLP H ++MTVHKSQGSEFDH I Sbjct: 477 IFNGETGLILGNSE-LKSCFAHDKDKIRHITPARLPAHVPAYSMTVHKSQGSEFDHVLFI 535 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 LP + ++TREL YTAVTRA+ +L++ + + + ++ + ER SGL Sbjct: 536 LPDSDSAILTRELFYTAVTRAKTKLTVISTKDAVRKCLSAKIERSSGL 583 >UniRef50_A4SEL8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEL8_PROVI Length = 570 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 213/603 (35%), Positives = 305/603 (50%), Gaps = 58/603 (9%) Query: 17 RPLDVQFALTVAGD------EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLAT 70 R D F+ + + + LA ++ + A G VC L+ + + Sbjct: 8 RAPDAYFSRFILRLIGRETCDSLPLRLAVSMAARSAASGDVCFDLASIHETMVEY---QG 64 Query: 71 CVSEIGELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTVA-RFFNEVNH 128 + +++ L S A P++L RLYL R W E +A R H Sbjct: 65 NRIAMPSMRDLRSLLYDSGAAVAPGATGPLVLDEKGRLYLYRYWKLEHDLAARLLKMAGH 124 Query: 129 AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 A A + + + Q+ A ALT ++++I+GGPGTGKT TV ++L+ L Sbjct: 125 RAPETAASDALSSLRTMGELEAGGMQERAVIAALTGKLTIIAGGPGTGKTATVGRILSIL 184 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 Q G + RI L APTGKAAARL SL + ST+HRLLG Sbjct: 185 RQQEGGRKKRIALCAPTGKAAARLQSSLKAMSGEAGAV-----------STIHRLLGTIQ 233 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 GS R RH+A NPL LD+LVVDE SMI LP+M+ L+ A+ A +I LGD+ QLASVE+GA Sbjct: 234 GSTRFRHNARNPLPLDILVVDEVSMIALPLMAALVSAMRPEASLILLGDQYQLASVESGA 293 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 VLGDIC+ A + + S+ L KSYRF +S +G Sbjct: 294 VLGDICSAA-----------------------AREPDSPIGASVITLDKSYRFSGESALG 330 Query: 369 QLAAAINRGDK-TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL-AGYGRYLDLLQARA 426 +L+ A+N G+ +A+ + + I + + L+E + GY YL+ Sbjct: 331 RLSMAVNAGNAASALALLMDISVSGISLLPVTGEMAFREELKECIVEGYRPYLEA----E 386 Query: 427 EPDLIIQAFNEYQLLCALREGP--FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 P ++ F +++L ALREGP GV LN +E+ + Q I P +Y GRPVM+ Sbjct: 387 TPAGALRHFEGFRILAALREGPGVTGVMKLNRMVEEILLQAGLID--PVEDFYPGRPVML 444 Query: 485 ARNDSALGLFNGDIGIALDRG---QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 + ND +L LFNGD GI ++ RV F DG+++++ P RLP HET +AMT+HKS Sbjct: 445 SANDYSLNLFNGDTGIVVEDALHPGRMRVAFMTADGSLRTIAPERLPSHETAYAMTIHKS 504 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 QGSEFDH +ILP +P++TREL+YT +TRAR L + + + A+ T R SGL Sbjct: 505 QGSEFDHVLMILPEAGSPLLTRELLYTGITRARALLEVRGEASVFEEAVKKTTIRLSGLC 564 Query: 602 ALF 604 + Sbjct: 565 DIL 567 >UniRef50_C6NU54 Exodeoxyribonuclease V alpha chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU54_9GAMM Length = 654 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 221/650 (34%), Positives = 328/650 (50%), Gaps = 59/650 (9%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCL----- 53 ++ K L + + PL+ A +A D P + AA+ H G GH L Sbjct: 10 RILKLLDDWHRAGWIGPLEPALARWMAERDPDIAPELLFLAAITVHLEGLGHTSLDVPAF 69 Query: 54 ---PLSRLENNEASHPLLATCVSEIGE-LQNWEECLL------------ASQAVSRGDEP 97 PL L+ E + L ++ +G + W+ L+ +S+ Sbjct: 70 LAQPLYYLDWPEQAGEALEEFLAAMGSGPEAWQAALIRGGRMLAQYHDRTPPNISQRGPE 129 Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDEINWQ 154 TP++ G RLYL R + +E + R + + TL +LF S + Q Sbjct: 130 TPLVWDGRRLYLRRHFRDEWEIDRQLQSRVGTTVAYFSEGSATLTRLFGPASSSSAGDGQ 189 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 ++A A+A R ++I+GGPG+GKT T+A+LL L+Q A R+ LAAPTGKAA R+ Sbjct: 190 RLACALAAERGFTLITGGPGSGKTYTIARLLVLLMQAAPR---RVALAAPTGKAALRMDT 246 Query: 215 SLGKALRQL----PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 +L +++ R A TLHRLLGA+PG++RLRH A PL+ D+LVVDE Sbjct: 247 ALRQSVDDFVRRGDDDLADLLRQVPPAQTLHRLLGARPGTRRLRHDAHRPLNFDLLVVDE 306 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 ASMI +M+ L+ A P +++I LGD DQLASVEAGAVL +IC A ++ A L Sbjct: 307 ASMIQHDLMAALLRATPARSQLILLGDPDQLASVEAGAVLAEIC-RGRAVYSPATAEDLK 365 Query: 331 RLTGTHVPAGTG-TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 R G + A + +A++L +++ L SYRF D I +LA AI GD V + Sbjct: 366 RRWGIALAADSLRDDASALEEAVVRLSSSYRF--DGPIAKLATAIRSGDAECVIDLLAAS 423 Query: 390 FT-------DIEKRLLQSGEDYIAMLEEALAGYGRYLDLL-----QARAEPDLIIQAFNE 437 T I+ R +++ + E L+ + + ++ A + Sbjct: 424 TTVEGSALGWIDPRAGAGRANFLELAERTWRSTQARLEQVPSGETEHATWVRELLAAADT 483 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +++LCALREGP+GVAG+N ++ ++ WY GRPV++ RND G++NGD Sbjct: 484 FRILCALREGPWGVAGINAQMAAQLRPPG-----YSGDWYPGRPVLVQRNDPIAGVYNGD 538 Query: 498 IGIALDRGQGTRVWFAMPDGNIKS---VQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 +G+ L QG R+ P G + + P RL + + +A+TVHK+QGSEF LILP Sbjct: 539 LGLVLPDTQG-RLQVYFPRGPQLAPLRLHPQRLGDATSAYALTVHKAQGSEFQRVLLILP 597 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 + +PV++REL+YTAVTRARR LS + R SGLA Sbjct: 598 PEDSPVLSRELLYTAVTRARREFIAVTPLETLSRILGRHGRRMSGLATRL 647 >UniRef50_Q89AB2 Exodeoxyribonuclease V alpha chain n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX5A_BUCBP Length = 618 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 196/614 (31%), Positives = 342/614 (55%), Gaps = 16/614 (2%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 M + L + V+ K + + + + +++ T + ++H GHVCLP +++ Sbjct: 1 MTITSILQKMVKLKIITSSNFYLSTML-FNKNTLATFLSICVNHFTNHGHVCLPHVLIQH 59 Query: 61 NEA---SHPLLATCVSEIGELQN--WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 + +H L T + EI ++ W E LL S +S G + TP I + Y+N+ W Sbjct: 60 QKIFFTNHIALITKLWEIAKINTCGWIEQLLNSNTISNGSKNTPFIFYKNNFYINKFWLA 119 Query: 116 ERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 E+ + +F ++ + +++ + + L +F + + + QK+A +++ I+ I GGPGT Sbjct: 120 EQKILKFISQKQNFKLINKNKIQKILKNIFNTNID-DTQKLAIILSIINNITFIIGGPGT 178 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTT + K+ ++ ++ I+L A TGKAA RL+ES+ + +++L LT+ +K + Sbjct: 179 GKTTIILKI-LLVLIRLHKKKINIKLTALTGKAANRLSESIHENIKKLNLTEHEKNIFNQ 237 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLH-LDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 +TLH LL +P N L+ L++L++DEASMID+ +M +LI ++P ++IF Sbjct: 238 KTTTLHNLLDLKPNKSFNYSCCKNKLYNLNLLIIDEASMIDITIMDKLISSIPKTTKIIF 297 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT--EAASLRDSL 352 LGD +QL S+ G +L +IC+Y GF+ + L +L + T + +++ D + Sbjct: 298 LGDYNQLPSISGGNILKNICSYYQEGFSTTTNKFLKQLFPNRITIKTIKKHQFSNINDKI 357 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 +L+KSYRF S I +++ + + +KT++Q D+ + + S +Y ++ E Sbjct: 358 IMLKKSYRFKKKSDIFKISEMLTKNKINNIKTLYQNINNDVNFKQISSKTNYNNIIFEIT 417 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH- 471 Y +Y L+ II FN Y++LC L+ G FG+ LN IE+ M++ I + Sbjct: 418 NSYSKYWSALKQSLPFLKIINIFNNYKILCILKNGLFGITELNLAIEKEMKKIGWIKKVT 477 Query: 472 --PHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPD-GNIKSVQPSRL 527 WY G+P++I +N+ + LFNG+ G+ L D + +V+F + I S+ + Sbjct: 478 IINGQTWYFGKPILILKNNEEMNLFNGECGLTLLDANKKLKVFFLPKNQEQIYSIPIHLV 537 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 PEH+T W MTVHKSQGSEF LILP+ T ++T+EL+YTAVTR++++L++Y+DE I Sbjct: 538 PEHQTNWTMTVHKSQGSEFSEVVLILPTIMTSILTKELIYTAVTRSKKKLTIYSDENIFI 597 Query: 588 AAIATRTERRSGLA 601 ++ R SGL+ Sbjct: 598 KSLKKNIIRYSGLS 611 >UniRef50_D1R7Z3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7Z3_9CHLA Length = 727 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 150/590 (25%), Positives = 249/590 (42%), Gaps = 81/590 (13%) Query: 24 ALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 A + D ++ A + LS A +G+VC P+ + Sbjct: 200 AQKLGIDSKSSIRTDAGVEFVLSELASDGNVCYPVDLFIEEANKVLEIEQEKISERISVL 259 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAI----EVDEAL 136 E+ + + EP I +L ++ E +AR + A +VD Sbjct: 260 KEQGRVEHFKLIHAGEPLQFI------WLKPLFVAEVGIAREIQRLLSAPVVLRDVDVDK 313 Query: 137 LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER 196 Q + + +N QK A A AL +++ +I+GGPGTGK+T +L ++ Sbjct: 314 ALQWIQAEHCIDLAVN-QKEAVAQALFQKMHIITGGPGTGKSTITKAILGITEKL----T 368 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHH 256 +I LAAPTG+AA R++E GK AST+H LL + + + Sbjct: 369 SKILLAAPTGRAAKRMSEITGK-----------------KASTIHSLLEYDFKGKGFKRN 411 Query: 257 AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY 316 +PL D+L++DE+SMID +M L+ A+PD+ARVIF+GD +QL SV G VL D+ A Sbjct: 412 RSSPLVCDLLIIDESSMIDTFLMYSLLKAIPDNARVIFVGDINQLPSVGPGNVLQDLIAS 471 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 S+ L + +R + S I A INR Sbjct: 472 QVV-------------------------------SVTTLNEIFRQAAGSFIITNAHRINR 500 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 G ++ + Q DF +E Q ED + + + L+ R + Sbjct: 501 GMFPDIRNLSQSDFFFVEA---QETEDVLKQI----------VALVSQRLPKKYDFHPSD 547 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 + Q+L +++G G+ LN +++ + + + VM RN+ + +FNG Sbjct: 548 DIQVLAPMKKGNIGIDNLNAVLQETLNPNQTPLMRQGRKLMVNDKVMQIRNNYSKEVFNG 607 Query: 497 DIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 DIG +D + + + S L E +A+++HK QGSE + + + Sbjct: 608 DIGRIVDIDHVEQQVVVKVEEREICYEFSELDEIVLAYAVSIHKYQGSECPCVVIPVHTS 667 Query: 557 RTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALF 604 ++ R L+YTAVTR ++ + L ++ LS A+ +R +GL Sbjct: 668 HFKLLYRNLLYTAVTRGKKLVVLVGTKKALSIAVRNDEIKKRYTGLKQAL 717 >UniRef50_D1T987 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1T987_9BURK Length = 696 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 241/645 (37%), Positives = 333/645 (51%), Gaps = 97/645 (15%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT--- 98 S EGHVC+PL+ L + LLAS S G T Sbjct: 66 ASRATAEGHVCVPLAALARRFDA------------SSAEVRAALLASGMASDGAADTAGA 113 Query: 99 ----PMILC-GDRLYLNRMWCNERTVARFFNEVNHA--------IEVDEALLAQTLDKLF 145 P+++ RLYL R + ER +A A + A L + L + F Sbjct: 114 AALRPLVIDAQGRLYLARYYDYERRLAHALVAQATADGSTANVDADTAPAALRERLLRYF 173 Query: 146 --PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 P DE++WQ+VAA +AL+ R++++SGGPGTGKTTTV +LA L+ RI LAA Sbjct: 174 GPPRDDEVDWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDA--RADLRIALAA 231 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL 263 PTGKAA R+ E+L +LP E +R+P+ + TLHRLLG+ PG R RHH NPL Sbjct: 232 PTGKAAQRMQEALLARAGELPA--ELAERLPQTSYTLHRLLGSGPGG-RFRHHRDNPLPY 288 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 DV+V+DEASMID+ M + L+DA+ R++ LGD+DQLA+VEAGAV ++ A + Sbjct: 289 DVVVIDEASMIDVAMATHLLDAIGAQTRLVMLGDKDQLAAVEAGAVFAELSARPALSASG 348 Query: 324 ER-------------ARQLSRLTGT----------------------------------- 335 R AR L R + Sbjct: 349 LRRVAQALDINEARLARALPRASRQGDEAPSDDFFVPPEALQTFEADASGDLFAGVATAA 408 Query: 336 -----HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 A + E L D + L+++YRFG +S IG+L+ AI G +A V + D Sbjct: 409 GDEQPDRDARSANEHNPLADCVVWLERNYRFGLESPIGRLSVAIRNGSPSAALDVLRTDP 468 Query: 391 TDIEKRLLQSGEDY---IAMLEEALAGYGRYLDLLQARA-----EPDLIIQAFNEYQLLC 442 T++ L + AG+ Y D L A +P + A N +++LC Sbjct: 469 TEVCAAALHEDAHTTLTERTMTRLAAGFAPYADALAATLASDTPDPLPLFDALNRFRILC 528 Query: 443 ALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL 502 A R GP GV +N I +++ + ++W+ GRPVM+ RND ALGLFNGDIGIAL Sbjct: 529 ATRLGPRGVDQVNAAIAAQVRRAAGVTLAVGAQWFAGRPVMVTRNDYALGLFNGDIGIAL 588 Query: 503 DRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 G RV+F DG +++V P+ LP H+T +A+TVHKSQGSEF+HA L+LPS + V+ Sbjct: 589 PGAGGALRVYFRTGDGGVRAVSPAALPPHDTAFALTVHKSQGSEFEHAVLVLPSAFSRVL 648 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 +RELVYTA+TRAR R+ + +L+ AIAT T+R SGLAA + Sbjct: 649 SRELVYTAITRARERVEVIGARAVLAQAIATPTQRDSGLAARIAE 693 >UniRef50_A6DNF1 Exonuclease V (RecBCD complex), alpha chain n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF1_9BACT Length = 601 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 220/610 (36%), Positives = 326/610 (53%), Gaps = 40/610 (6%) Query: 16 LRPLDVQFALTVAG-----DEHPAVTL--AAALLSHDAGEGHVCLPLSRLENNEASHPLL 68 +D QFA ++ H TL +LS+ A + H LPL + + Sbjct: 8 FSEIDRQFAQFISQRAGELSAHELETLEDICLVLSYYANQQHSVLPLRDILIEYRNED-- 65 Query: 69 ATCVSEIGELQNWEECL-LASQAVSRGDEPTPMI--LCGDRLYLNRMWCNERTVARFFNE 125 VS + + E+ L + Q + +GDE P+I L +YLN+ + E TVARF ++ Sbjct: 66 GHIVSHNIDFELDEQALKIYRQVMGQGDETKPLIVDLENQLIYLNKYYRAEATVARFISK 125 Query: 126 VNHAIEVDEALLAQTLDKLFP--VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 + + + L Q L+++FP ++ +INWQKVAA +AL R VISGGPGTGKTTTV K Sbjct: 126 LADQTQELDGQLTQKLNEVFPNQIAGKINWQKVAAFMALRSRFCVISGGPGTGKTTTVGK 185 Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGK----ALRQLPLTDEQKKRIPEDAST 239 +LA L++ RI L APTGKAA RL ES+ + + +IP A T Sbjct: 186 ILALLLEQ--NPATRIDLLAPTGKAADRLGESIRNFISSQSDEKAFSAATLAKIPVQAQT 243 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +HR LG PG +HH D+L++DE+SM+ L + +I AL H RVI LGD+D Sbjct: 244 IHRYLGFAPGGG-FKHHDKFKTPSDILLIDESSMVPLTLFRSVIQALQSHCRVILLGDKD 302 Query: 300 QLASVEAGAVLGDICAYANAG-FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 QLA+VE G VLGD+ A F+ A++L L+ + SL+D + L+ S Sbjct: 303 QLAAVETGNVLGDLTAGGQINSFSPTFAKELKELSSELI-LNEDQSMGSLQDIMVKLEHS 361 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQ--QDFTDIEKRLLQSGEDYIA--MLEEALAG 414 +RF S SGIGQLA +N Q + + DI + L + + + + + Sbjct: 362 FRFDSSSGIGQLARDVNEQPVPHPLEDTQYFKAYDDIAHQALPAKAEELFSGAIRQCFTE 421 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 Y + L P+ ++A N++++LCA R G FG + LN+ I Q I Sbjct: 422 YKKSLR------SPEEALKALNKFRILCASRNGSFGASKLNQHISQI------IFSQSDE 469 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETT 533 Y+GR +MI RND + L+NGDIGI L G + WF PD +++S PS LP++++ Sbjct: 470 SLYKGRAIMITRNDYNIKLYNGDIGIILPDDSGLPKAWFPGPDNSLRSFPPSMLPDYQSA 529 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +AMT+HKSQGSE+ + LILP Q ++++EL+YT +TRA+ + +YA + L + + Sbjct: 530 FAMTIHKSQGSEYQNVHLILPDQADRLLSKELIYTGITRAKSAIVIYASRKTLLSTCKRQ 589 Query: 594 TERRSGLAAL 603 T+R SGL Sbjct: 590 TDRLSGLLLR 599 >UniRef50_C5SAK6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAK6_CHRVI Length = 740 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 264/734 (35%), Positives = 352/734 (47%), Gaps = 129/734 (17%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 L +L E LR LD+ + + PAV LA AL S G GHVCL L+ Sbjct: 5 ALLSRLDAWTEAGALRRLDLALTRFIRDQTPETDPAVLLAIALTSERNGHGHVCLDLAGA 64 Query: 59 ENNEASHPLLATCVSEIGE--------------LQNWEECLLASQAVSR----------- 93 N S + L +W L S A+ Sbjct: 65 LNRPYSVLTHRSDWLTPPPGPSTELAALLAPLTLDDWVARLARSGAIEDRLGLASDPGLP 124 Query: 94 -----------GDEPTPMILCG----DRLYLNRMWCNERTVARFFN-EVNHAIEVDEALL 137 E P+IL G LYL R W E+ + + + + E Sbjct: 125 ARPAADTDARPNHEHPPLILDGAPERPLLYLRRYWTYEQRIRTGIAARLCRPVPLPEDAT 184 Query: 138 AQTLDKLF-------PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ 190 LD LF P +D + WQ++A A+A R +VI+GGPGTGKTTTV +LLA L Sbjct: 185 RDLLDLLFAGDGSGTPGTDTLPWQRIACALAARRAFAVITGGPGTGKTTTVVRLLALLQG 244 Query: 191 MAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD-----EQKKRIPEDASTLHR 242 +A G RIRLAAPTGKAAARL S+ + QLP + IP +A TLHR Sbjct: 245 LALTAGGPPLRIRLAAPTGKAAARLNASIAAQVDQLPFDRLPGGRAMRAAIPTEAGTLHR 304 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG +P S+ R+ A PL D++VVDEASMID+ +MS L+ AL AR+I LGD+DQLA Sbjct: 305 LLGPRPDSRHFRYGADRPLPADIVVVDEASMIDVELMSALLAALRPDARLIVLGDKDQLA 364 Query: 303 SVEAGAVLGDICAYA-NAGFTAERARQLSRLTGTHVPAGTGTEAA-SLRDSLCLLQKSYR 360 SVEAGAVLGD+C A A +T L R+TG +P + L ++ +L+ SYR Sbjct: 365 SVEAGAVLGDLCRRARQAHYTPPTRDWLQRVTGARLPDDLIDPSGRPLDQAIAMLRHSYR 424 Query: 361 FGSDSGIGQLAAAINRG------------------DKTAVKTVFQQDFTDIEKRLLQSGE 402 F ++ GIG LA +N G ++ + ++ +RL +GE Sbjct: 425 FRAEGGIGALAELVNAGVLDGRPVRDPLAALDRLFERQSDPSLQTDPGLGHLRRLRLTGE 484 Query: 403 DYIAMLEEALAGYGRYLD-------------------------LLQARAEPDLIIQAFNE 437 + AGY LD L + R D AF++ Sbjct: 485 PDTQLDHLVRAGYWHGLDSTGDSGSRTSHGAAGLDPVPGYLAVLHRERPGDDAGPDAFDD 544 Query: 438 -----------YQLLCALREGPFGVAGLNERIEQFMQQ--KRKIHRHPHSRWYEGRPVMI 484 +QLL LR+GP+GV GLN RI+ + Q + + +W+EGRPV++ Sbjct: 545 WARAVLQAQAGFQLLTPLRQGPWGVEGLNRRIQHLLSQGAQAPLTGAGERQWFEGRPVLV 604 Query: 485 ARNDSALGLFNGDIGIALDRGQG---------TRVWFAMPDGN--IKSVQPSRLPEHETT 533 RND ALGL NGDIG+ L RV F DG+ I+ + PSRL ET Sbjct: 605 TRNDYALGLMNGDIGLTLRVPSRRDGSAGRLVLRVAFPAGDGSGAIRWILPSRLQAVETV 664 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS-LYADERILSAAIAT 592 +AMTVHKSQGSEF+H AL+LP PV+TREL+YTA+TR++ + LY+ E ++ A+ Sbjct: 665 FAMTVHKSQGSEFNHTALVLPEASNPVLTRELIYTAITRSKSSFTLLYSRESVIREALGR 724 Query: 593 RTERRSGLAALFSS 606 R ER SGLA S Sbjct: 725 RVERVSGLAMALES 738 >UniRef50_D1N1Q4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q4_9BACT Length = 635 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 213/634 (33%), Positives = 293/634 (46%), Gaps = 49/634 (7%) Query: 12 EHKQLRPLDVQFALTVA----GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN-EASHP 66 + P+D+ FA + E + LAA S H C PL L P Sbjct: 11 ATGEFEPIDLAFADFMLRFARAPECEELYLAALFASRAVRLSHSCCPLRELAGMLFPETP 70 Query: 67 LLATCVSEIGELQNWEECLLAS---------QAVSRGDEPTPMILCG-DRLYLNRMWCNE 116 + W E L A A PTP+ + RLYL R E Sbjct: 71 AEGQRQFRLPGCDAWLERLSAPALAAAVSRYPACRDAGFPTPLAIDDAGRLYLQRYLVYE 130 Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLF------PVSDEINWQKVAAAVALTRRISVIS 170 VA+ E L D LF D ++Q++AA A +R +VIS Sbjct: 131 LQVAQAVMHRARRPEHPPELPPGAFDALFINYRNGAAEDRPDFQRLAALAAASRDFTVIS 190 Query: 171 GGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 GGPGTGKTT VA LLA ++ A R+ L APTGKA ARL E+L + ++ + + Sbjct: 191 GGPGTGKTTVVAALLA--LEFARAPELRVALCAPTGKAQARLGEALREDGLKIGTAEAIR 248 Query: 231 KRIPEDA-STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 +RI E A ST+ RL+G+ P + R ++HAGNPL D+++VDE+SM+ LP+M+RL+ AL Sbjct: 249 RRILELAPSTIDRLIGSAPLTHRTKYHAGNPLPFDLVIVDESSMVSLPLMARLMQALAPE 308 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 R+I LGD +QLASVE+GAVL DIC + R+ V +A L Sbjct: 309 TRLILLGDPNQLASVESGAVLADICDSGKRNAFSGAIREAYLRQSPGVFLAEPDDARPLT 368 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAIN-----------RGDKTAVKTVFQQDFTDIEKRLL 398 +L L ++RF + IG++++AI G + DF I Sbjct: 369 GALAELTHNFRFDTAPAIGEVSSAIKLLQDGATPEKIEGLTDFIHHQQNDDFRTIAVTRD 428 Query: 399 QSGEDYIAMLEEALAGYGR---YLDLLQARAEPDLIIQAF---NEYQLLCALREGPFGVA 452 Q L L G L L + + +AF N +++L A+R GPFGV Sbjct: 429 QLSARLRQELARELPGKRGCFLRLAELAEAGTAEALTEAFGLLNAFKVLAAVRRGPFGVE 488 Query: 453 GLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF 512 LN I + K G PVMI ND GL NGDIG+ G+ Sbjct: 489 ELNRLIRELFHWKSDDT--------PGMPVMILANDRLTGLSNGDIGLFWKDLAGSGAIR 540 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 G +S + LPEHE +AMT+HKSQGS F A L+LP +PV+TREL+YT +TR Sbjct: 541 IYFPGFERSFLAAELPEHEPVFAMTIHKSQGSGFSRALLVLPDGDSPVLTRELLYTGITR 600 Query: 573 ARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 A + + L++ + + RT R SGL A + Sbjct: 601 ASKEVVLWSTPAVTRLMLERRTRRASGLQARLAE 634 >UniRef50_C7RK95 Helicase, RecD/TraA family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK95_9PROT Length = 752 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 146/608 (24%), Positives = 248/608 (40%), Gaps = 84/608 (13%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEAS 64 L + + D + + +A D + L+ + +GH LP + L Sbjct: 191 LAQDIRGIGFLSADTIAQKVGIAKDSPLRAQAGISYALTEASAQGHCGLPYAELVPLAVK 250 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + + E Q + +L V E P + +L ++ E+++A Sbjct: 251 LLDIPESIIETAIAQEIADEVLVPDTV----EGQPSV------FLAPLYYAEQSLAAQVR 300 Query: 125 EVNHA----IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + A + +++ + + + QK A +AL+ ++ VI+GGPG GKTT Sbjct: 301 RLTTAASTLPDFAADKAIPWVEQKLAI-ELADSQKEAIRLALSAKLLVITGGPGVGKTTL 359 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 V +L + + + L APTG+AA RL ES G +A T+ Sbjct: 360 VNSILT----IMSVKGVKPLLCAPTGRAAKRLGESTG-----------------LEAKTI 398 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLL P + + + +A NPL DVL+ DE SMID+P+ ++L+ A+ +I +GD DQ Sbjct: 399 HRLLEVNPLNGQFKRNADNPLECDVLIADECSMIDVPLANQLLKAVATSTVMILVGDVDQ 458 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV G L D+ + + L + +R Sbjct: 459 LPSVGPGQFLADLIDSGSVP-------------------------------VIRLTEVFR 487 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 + S I + A INRG ++ ++ + Y+ EE +D Sbjct: 488 QAASSRIVRSAHQINRGVFPSLPGKG------------EASDFYLVAAEEPEVIAQTVVD 535 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH-RHPHSRWYEG 479 L+Q R + + Q+LC + G G G+N+ ++ + + +R+ G Sbjct: 536 LVQTRLPRKFHVDPVRDIQVLCPMNRGITGARGINQALQAALNPPGEHSVDKFGNRFSVG 595 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 VM N+ +FNGDIG + DG + + L E +A T+H Sbjct: 596 DKVMQIENNYDRDVFNGDIGFVTGIDRDDEELAVTFDGRVVTYPFGELDELVLCYATTIH 655 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA-TRTERR- 597 K+QGSE+ + + +Q ++ R L+YT +TR + + L +R L+ A+ ERR Sbjct: 656 KAQGSEYPVVVMPISTQHYMMLKRNLIYTGITRGKTLVVLVGQKRALAMAVKGKEVERRW 715 Query: 598 SGLAALFS 605 S L S Sbjct: 716 SKLKERLS 723 >UniRef50_A8ZLV4 Helicase, RecD/TraA family n=18 Tax=Cyanobacteria RepID=A8ZLV4_ACAM1 Length = 753 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 149/586 (25%), Positives = 244/586 (41%), Gaps = 79/586 (13%) Query: 24 ALTVAGDEHPAVTLAAALL---SHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 A ++ H + LL S A EGH LP L + L + +++ Sbjct: 211 ARSLGISPHSEYRYRSGLLHVLSESAEEGHCYLPQPELIDRAVKRLALPDYQPKPDQVEY 270 Query: 81 WEECLL--ASQAVSR-GDEPTPMILCGDRLYLNRMWCNERTVARF-FNEVNHAIEVDEAL 136 ++ A V R E + +LC Y + E ++R + ++ VD Sbjct: 271 LIHAMISDAELIVERLTHEGSTKLLC----YAPPFFQAEFHLSRRVLQLLASSLVVDNER 326 Query: 137 LAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + LD+ +D Q+ A +A ++R+ +++GGPGTGKT T ++A M Sbjct: 327 VRAWLDRFMAQTDVSLSKQQQQAVEMAASQRVVILTGGPGTGKTFTTRTIVALWKAM--- 383 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 I LA+PTG+AA RL+E G +A T+HRLL P + + + Sbjct: 384 -GKDIVLASPTGRAAQRLSEVTG-----------------HEAKTIHRLLEFDPKTMKFQ 425 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 ++ NP+ D +V+DEASM+DL + + LI A+ +A+++ +GD DQL SV G VL D+ Sbjct: 426 RNSDNPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLVGDTDQLPSVGPGNVLLDLI 485 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 R + L + +R S I + A I Sbjct: 486 TSG-------------------------------RIPIIELTEVFRQAQASHIIRNAHRI 514 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 N+G +++V TD E+ + ++E + P+L Q Sbjct: 515 NQGQFPNLESVSPSPKTDCLWLGAPEPENGVQAIQELIN-----------DLLPELGFQP 563 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIARNDSAL 491 + Q+LC + G G LN+ ++ + + G V+ ND Sbjct: 564 ARDVQVLCPMTRGEVGTRKLNQVLQALINPPCPDKPELTRGGLILRVGDRVLQQVNDYNR 623 Query: 492 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 +FNGD+G+ D S + L E WA+T+HKSQGSE+ L Sbjct: 624 EVFNGDMGVIEDINLEEIEVTVHYAERSVSYDLADLNEIGLAWAVTIHKSQGSEYPVVIL 683 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR 597 L Q +++R L+YT +TRA++ L + +S AI +R+ Sbjct: 684 PLYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISMAIRQIKDRQ 729 >UniRef50_C1AXR1 Exodeoxyribonuclease V alpha chain n=5 Tax=Nocardiaceae RepID=C1AXR1_RHOOB Length = 623 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 206/613 (33%), Positives = 297/613 (48%), Gaps = 37/613 (6%) Query: 12 EHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLL 68 E L DV AL ++ G+ V LA AL G VCL L+R+ Sbjct: 19 EAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGSVCLDLTRIREVTVDEESE 78 Query: 69 ATCVS-EIGELQNWEECLLASQAVSRGDEP--TPMIL----CGDRLYLNRMWCNERTVAR 121 + E L S V+ G P+ L G LYL+R + E T+ R Sbjct: 79 VDLDALPWPEDSTVVAALRRSPLVTGGPAGPLRPLRLVDTAEGGLLYLDRYFRQEATIRR 138 Query: 122 FFNEVNHAIE-VDEALLAQTLDKLF-------PVSDEINWQKVAAAVALTRRISVISGGP 173 +E VDE L + LD+LF + + Q++AAAVA T+ SV+ GGP Sbjct: 139 VLDERAVGYPLVDERSLREGLDELFRDQHDHTAPAPSPDRQRIAAAVAATQWTSVVVGGP 198 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GTGKT TVA+LLA L + G RI LAAPTGKAAARL ES+ + L L E Sbjct: 199 GTGKTHTVARLLALLTRQ-PGPGRRIALAAPTGKAAARLQESVREQADALGLPPEL---- 253 Query: 234 PEDASTLHRLLGAQPG-SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 +A TLHRLLG Q G R R +A N L DV+VVDE SM+ L MM RL+ A+ R+ Sbjct: 254 --NAMTLHRLLGWQRGRGARFRFNANNHLPYDVIVVDETSMVSLTMMCRLLAAVRPDTRL 311 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ-----LSRLTGTHVPAGTGTEAAS 347 + +GD DQL SV+AGAVL D+ A +G + L A + +E Sbjct: 312 VLVGDPDQLTSVDAGAVLADLVARPVSGTENPVLGRVVGADLDAADDPLEAALSASERDR 371 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 LR + L + RFG GI +LA A+ G++ V + + + G + + Sbjct: 372 LRGGVVRLSRGRRFG--GGIAKLAVAVRDGEEELVIDILRGG---GAPEVSFHGPEDLDA 426 Query: 408 LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK 467 L + + + +Q +++LLCA REGP+GV + +++ + Sbjct: 427 LRADVVATAAAVTDSAESGDASAALQHSEKHRLLCAHREGPYGVQRWARQAMEWIGETTG 486 Query: 468 IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRL 527 P RWY G+P+M+ ND ++NGD G+ + R + + P+ L Sbjct: 487 QRLDPD-RWYPGQPLMVTANDHETKIYNGDTGVIVRRDDDELFAAFVRGTEPFLLHPTHL 545 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 +T +AMT+H+SQGS++D +++LP + ++TREL+YTA+TRAR + + E + Sbjct: 546 SAVQTVYAMTIHRSQGSQYDTVSVVLPGAASSLLTRELLYTAITRARNHVRIIGTEDAVR 605 Query: 588 AAIATRTERRSGL 600 A + R R SGL Sbjct: 606 AGVQRRVLRASGL 618 >UniRef50_B2JKV2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Burkholderia RepID=B2JKV2_BURP8 Length = 672 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 226/622 (36%), Positives = 314/622 (50%), Gaps = 78/622 (12%) Query: 46 AGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT----PMI 101 EGHVC L L + E+ + LLAS S G +P P++ Sbjct: 61 TSEGHVCTSLDELAQRYEA------------EVAHVRCALLASGVASDGMQPAYALRPLV 108 Query: 102 LCG-DRLYLNRMWCNERTVARFFNEVNH-------AIEVDEALLAQTLDKLF--PVSDEI 151 + G RLYL R + ER +A+ + + E+ L + L + F P ++I Sbjct: 109 VDGQGRLYLARYYDYERRLAQSLVDHARVEHEDGVSGEMSPHALRERLLRYFGPPQDEQI 168 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ+VAA +AL+ R++++SGGPGTGKTTTV +LA L+ R+ LAAPTGKAA R Sbjct: 169 DWQRVAAVMALSGRLTIVSGGPGTGKTTTVVGVLACLLDARPA--LRVALAAPTGKAAQR 226 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 + E+L LP E R+P + TLHRLLG P R RHH NPL DV+V+DEA Sbjct: 227 MQEALLARAGSLP--PELAARLPHTSFTLHRLLGTGPDG-RFRHHRENPLPYDVIVIDEA 283 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI------------------ 313 SMID+ M + L DAL ++ LGD+DQLA+VEAGAV G++ Sbjct: 284 SMIDVAMATHLFDALARDTHLVMLGDKDQLAAVEAGAVFGELSAQPAFTAQGVGSIAAAL 343 Query: 314 ----------------CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 C A + L ++ A L D + L++ Sbjct: 344 GIGERSLRDALPATAICHDARSDQAEPLFDDLFAMSSGAPSEAKPARLAPLADCVVWLER 403 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTV------------FQQDFTDIEKRLLQSGEDYI 405 +YRFG +S IG+L+ AI RG V F +D Sbjct: 404 NYRFGLESAIGRLSLAIRRGAAQEALDVMDIDPAVPCAAAFHEDMDAAPSEHTIHRLAAG 463 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 + A + + A N +++LCA R G GV +N + +++ Sbjct: 464 FAAYADALTAALFSTSANAASHAPALFDALNRFRILCATRLGARGVDHMNAAMAAQVRRA 523 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQP 524 ++ ++W+ GRP+M+ RND ALGLFNGDIGIAL G RV+F DG +++V P Sbjct: 524 ARMPLAIGAQWFAGRPIMVTRNDYALGLFNGDIGIALPGADGALRVFFRGADGALRAVSP 583 Query: 525 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER 584 + LP H+T +A+TVHKSQGSEFDHA L+LPS + V++RELVYTAVTRAR R+ + Sbjct: 584 AALPPHDTAFALTVHKSQGSEFDHAVLMLPSTFSRVLSRELVYTAVTRARERVEVVGSRA 643 Query: 585 ILSAAIATRTERRSGLAALFSS 606 +L AIAT T+R SGLAA + Sbjct: 644 VLMRAIATPTQRDSGLAARIAE 665 >UniRef50_Q480P0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480P0_COLP3 Length = 769 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 206/688 (29%), Positives = 316/688 (45%), Gaps = 130/688 (18%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE------------------ 83 LS GH CLPLS + + +T N ++ Sbjct: 76 LSASLRAGHSCLPLSEVADQHWGKGFTSTKKKNNVNKDNQQDSEGLTEEHTQELSHAGFV 135 Query: 84 -------CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN-EVNHAIEVDEA 135 ++ S+ + ++L D+LYL R + E + + + + D Sbjct: 136 FAPLTQLQVMLSELNILASDQQLLVLQHDKLYLRRYFQFESDLGEAIHARLLQQCQYDND 195 Query: 136 LLAQTLDKLFP-----------VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 + Q + KLFP S EI+WQKVA A A+ + SVI+GGPGTGKT TV KL Sbjct: 196 SIGQCIGKLFPNDLAQVEAQDVESLEIDWQKVAVANAINKNFSVIAGGPGTGKTYTVTKL 255 Query: 185 LAALI--------------------QMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 LAAL+ + I L APTGKAA RL+ES+ A+ Sbjct: 256 LAALVMLEQMGLAKTGKQQAEVAQQKQQGTAVLNIALVAPTGKAAQRLSESIVNAISGFK 315 Query: 225 --LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 + D+ IP A TLHRLLG P S RHH N L D++++DE SM+DLP+M+R+ Sbjct: 316 NLIDDKVLAEIPTQAQTLHRLLGVLPNSPNFRHHQDNRLPYDIVLIDEVSMVDLPLMTRV 375 Query: 283 IDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT--------- 333 AL D A+VI LGD DQL SV AG+VL DI + GF+ E + L+++ Sbjct: 376 FRALKDTAKVILLGDADQLPSVAAGSVLADIAPRPHGGFSLENEQYLAQVCQLLPAQVSD 435 Query: 334 --GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 H E +S D L L KS RF GIG +A ++ +GD + + Sbjct: 436 YFSAHRLPSQSAEQSSF-DYLTFLVKSRRFDGKGGIGLIANSVIKGDVKRSWRLLNDSLS 494 Query: 392 ------DIEKRLLQSG-----------EDYIAMLEEALAGY-----GRYLDLLQARAEPD 429 I+ LQ+G + + + L + +Y ++ + Sbjct: 495 QSTQEGFIQGDYLQAGYLQGDKSQKQQPSQLTLAQGDLTTWLAPLVKQYYQPIEHCSTVS 554 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDS 489 +++++LCA R+G +GV LNE I+ ++ + ++ Y G+P+MI ND Sbjct: 555 DAFVLLSQFRVLCATRQGDYGVERLNEVIKSYLGKNNAPYQQHQQTLYHGQPIMINENDY 614 Query: 490 ALGLFNGDIGIA---LDRGQGTRVWFAMPDG--------------------NIKSVQPSR 526 LGL+NGDIGI +D+ T + D I+ + PSR Sbjct: 615 RLGLYNGDIGIIWKVIDQAGKTHLMACFEDTTLESKSAESKVDESTETSQLTIRQILPSR 674 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQ--------------RTPVVTRELVYTAVTR 572 LP+ E+ +AMT+HK+QGSEF H A+++ + + +++REL+YT +TR Sbjct: 675 LPQFESVYAMTIHKTQGSEFSHVAMVISATQSEQQTLQQGKQQGGSRLLSRELLYTGITR 734 Query: 573 ARRRLSLYADERILSAAIATRTERRSGL 600 A+++L++ A++R+ + + +R SGL Sbjct: 735 AKKQLTIAANQRVWQQGVTAQVKRHSGL 762 >UniRef50_B0UUC7 Exodeoxyribonuclease V, alpha subunit n=9 Tax=cellular organisms RepID=B0UUC7_HAES2 Length = 674 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 218/673 (32%), Positives = 342/673 (50%), Gaps = 76/673 (11%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPA---------VTLAAALLSHDAGEGHVCL 53 + L + E K ++ D FA +A + L AAL + +GH CL Sbjct: 1 MLNILYQLKERKFIQAGDYYFAKLIADKQRELDYSSQVKNLAILLAALCNFHNQQGHTCL 60 Query: 54 PLSRLENNE------ASHPLLATCVSEIGEL--QNWEECLLASQAVSRG--DEPTPMILC 103 + A L +IG + W+ L+ A ++ +E P++L Sbjct: 61 KIENFSFRNLFNLPYAEKSYLIDIKEKIGNITQSEWQNLLINHIAFTQDPINEVKPLVLQ 120 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT---LDKLFPVSDEIN-------W 153 +RLY R W +E +A F E + + L K FPV E N W Sbjct: 121 NNRLYFYRTWQDEHRIAEFLIRTIKQKENQPYPIEKIQGILQKYFPVEHEDNSLKQKHNW 180 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK+A A A+ + +I+GGPGTGKTTTV +LL AL ++A+G+ IRL APTGKA+ RL Sbjct: 181 QKIAVATAIHQPFCMITGGPGTGKTTTVTRLLLALQELAEGK-LVIRLVAPTGKASERLK 239 Query: 214 ESLGKALRQLP------LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 S+ + L +++ K IP +A T+H L+G + ++ +++ NPL +D+LV Sbjct: 240 ISMKNSFNLLTKKELIKVSEHIKNAIPFNAETIHSLIGVRFFEEKTKYNKRNPLPIDLLV 299 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 VDEASM+DL +M++L+ AL ++I LGD+DQL+SVEAGA+L ++ + +++ A Sbjct: 300 VDEASMVDLFLMAKLLQALKPSCKLILLGDKDQLSSVEAGAILAELGTFRQYSISSKLAD 359 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR----------- 376 L + TG ++ + +RD LC L+ S RFG IG+LA IN+ Sbjct: 360 YLQQTTGENLEH--HADENLIRDCLCNLEGSRRFGKHPYIGKLAQLINQQKIAESWQLFH 417 Query: 377 -----------GDKTAVKTVFQQDFTDIEKRLLQSGEDY---IAMLEEALAGYGRYLDLL 422 G+ V Q + T+I+++ L +++ A+ Y YL L+ Sbjct: 418 QYQQENNTNDTGEINLVDYSTQYEQTNIDEQPLAHHYSQYCSQLVVQSAVQNYEEYLQLI 477 Query: 423 QARAEPD--------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 E + I AFN+ + L ALR G G LN+ I + +++K + + Sbjct: 478 HKITENNLPIKLHIAAIFAAFNKVRFLTALRVGELGSENLNQLIAEQLKKKGLVQFNHSR 537 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQ---GTRVWFAMPDGNIKSVQPSRLPEHE 531 +Y G+P++I N+S LGL NGDI + L Q + F +G + SR+PEH Sbjct: 538 DFYIGKPIIITENNSRLGLANGDIALYLAEKQPDGSLKGHFWFENGKAE--LASRIPEHS 595 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 + MT+HKSQGSEF H ++LP + PV+ +ELVYT VTRA ++++++D +I + A++ Sbjct: 596 PAFTMTIHKSQGSEFSHTFVVLPCEANPVLCKELVYTGVTRAINQVTIFSDRKIWNMAVS 655 Query: 592 TRTERRSGLAALF 604 TER+SGL + Sbjct: 656 KATERQSGLGEVL 668 >UniRef50_Q3B2W0 Helicase RecD/TraA n=19 Tax=Bacteria RepID=Q3B2W0_PELLD Length = 739 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 150/612 (24%), Positives = 247/612 (40%), Gaps = 92/612 (15%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEAS 64 L + R D + ++ +A D + + + GH +P L + Sbjct: 203 LSRDIAGIGFRTADAIAQSIGIAADSPLRARAGMSWVLQELSSKGHCRVPEPMLLDAARQ 262 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGD--RLYLNRMWCNERTVARF 122 + V EE L A R +L G+ YL +W E+ V Sbjct: 263 LLQIPDSV--------LEEALQVECAAGRI----VAVLEGEERYCYLEYLWKAEQGVVEG 310 Query: 123 FNEVNH------AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + ++V+ ++ +S Q+ A +AL+ ++ +I+GGPG G Sbjct: 311 IRRIAGGKLPWGRLDVERSVTEAEERSRLELS---VSQREAVRLALSNKLLIITGGPGVG 367 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTT ++ L+ + + ++ L APTG+AA RL+E+ G+ + Sbjct: 368 KTT----IIRTLLSIPEVFGLKVLLTAPTGRAAKRLSEATGR-----------------E 406 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 T+HRLL P + + A NPL D+++VDEASMID+ +M+RL+ A+P +A +I G Sbjct: 407 GRTIHRLLEFDPATFDFKRSAHNPLEADLVIVDEASMIDVVLMNRLLPAIPKNAALILAG 466 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL V GAVL D+ + + L Sbjct: 467 DVDQLPPVGPGAVLSDLISSGTV-------------------------------RVVRLT 495 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 + +R + S I Q A +NRG+ + D S +D L Sbjct: 496 EIFRQAATSLIIQNAHRVNRGE--GLLRHEGPGLGDFYFVESSSSDDIRRKL-------- 545 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR-KIHRHPHSR 475 + ++ R + ++ Q+L + GP G LN +++ + K Sbjct: 546 --VQIVAERIPERFGLDPLDDIQVLTPMNRGPLGAESLNVLLQERLNGGGGKRIERFGVA 603 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 + G V+ N+ +FNGDIGI + DG Q L E WA Sbjct: 604 YGRGDKVIQTVNNYEKEVFNGDIGIISAIDHEEGELQVLFDGREVRYQTGELDEMAPAWA 663 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA--TR 593 +T+HKSQGSE+ + L P++ R L+YTA+TR R+ + + +E+ L A+ + Sbjct: 664 ITIHKSQGSEYPAVVIPLSMLHYPMLERNLIYTALTRGRKLVMVIGEEKALRLAVGKCSS 723 Query: 594 TERRSGLAALFS 605 R +GLA Sbjct: 724 KGRLTGLADALK 735 >UniRef50_Q7NQR4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chromobacterium violaceum RepID=Q7NQR4_CHRVO Length = 565 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 249/594 (41%), Positives = 321/594 (54%), Gaps = 45/594 (7%) Query: 19 LDVQFAL---TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEI 75 L Q A +A D V LS+ GHVCLPL+ Sbjct: 8 LPGQLARLFQRLAPDVDDRVLALIGELSNANLAGHVCLPLAH------------------ 49 Query: 76 GELQNWEECLLASQAVSRGDEPTPMILC-GDRLYLNRMWCNERTVARFFNEVNHAIE-VD 133 + L S V R E P+IL RLY R W +E + + + + D Sbjct: 50 ---RGEAAALRGSPLVGRPGEYAPLILDEAGRLYFARHWHDEDRLVQGLERLAQPLPPQD 106 Query: 134 EALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 EA LA L++LFP + E + QK+AAA+A +R+ VISGGPGTGKTTTV +LLA L M Sbjct: 107 EARLADWLNRLFPGAGDGEPDRQKLAAALAARQRLMVISGGPGTGKTTTVVRLLALLAAM 166 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 + + +AAPTGKAAARL+ES+ A +L D ++++P A TLHRLLG +PG + Sbjct: 167 SP-RPLVMAMAAPTGKAAARLSESVRAARDRLDADDAVRRQLPAQAETLHRLLGLRPGVE 225 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 RHHA NPL LDVLVVDEASMIDL +M+R + ALP AR+I LGDRDQL+SVEAGAVLG Sbjct: 226 APRHHASNPLPLDVLVVDEASMIDLSLMARTVAALPSQARLILLGDRDQLSSVEAGAVLG 285 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 ++C + E ++ L R+ G + G +L D + LL +S+RFG+DSGIG+LA Sbjct: 286 ELCGRI--AYRDETSQWLQRVAGAVLQ-GDAAPGGALTDCVALLTRSHRFGADSGIGELA 342 Query: 372 AAINRGDKTAVKTVFQQ-DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL 430 +N G+ V + D+ ++ E LA YLD + A A D Sbjct: 343 RRVNAGEGQGSLHVLDDAGWPDVWRQDAADD-------AELLARRRGYLDAVAAGAGADE 395 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSA 490 +AF+ + LL A R VA N RIE+ ++ + P WY GRPVMI ND Sbjct: 396 AQRAFSAFMLLAAERR---QVADCNRRIERELEAAG--VKQPGRDWYPGRPVMIGENDYG 450 Query: 491 LGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 LGLFNGDIG AL R G RV F DG + P RLP HET +AMTVHKSQGSE+D Sbjct: 451 LGLFNGDIGFALQRPSGLRVLFPSADGGWREFAPGRLPAHETVFAMTVHKSQGSEYDEVW 510 Query: 551 LILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 L LP Q ++ R L+YTA+TRA+ R + D R SGL Sbjct: 511 LQLPQQAGALLNRALLYTAITRAKLRFAAVGDAEAWLRGAELAPRRDSGLGDRL 564 >UniRef50_D0KVH2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVH2_HALNC Length = 714 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 238/682 (34%), Positives = 333/682 (48%), Gaps = 81/682 (11%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 +L L E V +R +D A V A D LA L SH AG+GHVCL ++ Sbjct: 32 ELLDILDEWVAAGWMRSIDRAVAGLVLNHAADISAPALLALVLASHQAGQGHVCLDMNAC 91 Query: 59 ENNEASHPLLATCVSEIGELQN-----------------WEECLLASQAV---------- 91 + S + + ++Q W+ L + V Sbjct: 92 LIDAKSLLRIPSGDGRGNDIQAVPRFTPADLLQGVTLTGWQAALDSCPGVVLQRPESSIH 151 Query: 92 --------SRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDK 143 + P + G LYL R W E+ + + + LD Sbjct: 152 GSSILGAPTSEQSNPPFVREGGLLYLRRYWQQEQGIVAALRSRLTPDALPAEPIRHILDA 211 Query: 144 LFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM----ADGERCR 198 LFP + + +WQK+A AVA+ RR S+I+GGPGTGKTTTV K L L QM A R Sbjct: 212 LFPSTIAQPDWQKIACAVAIRRRFSLITGGPGTGKTTTVVKFL-LLEQMRALEAGLPPRR 270 Query: 199 IRLAAPTGKAAARLTESLGKALRQL-----PLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 IRL APTGKAAARL +S+ + L + +K +P+ T+HRL+G +P Sbjct: 271 IRLCAPTGKAAARLLQSILGQMDALLAPFDAAFPDLRKALPDTVETVHRLIGVRPNQIHP 330 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + A NPL DV+VVDEASMI + +M++L+ +L + +++ LGD+DQLASVE GAVLG++ Sbjct: 331 VYRAENPLPADVVVVDEASMIGVELMAKLLASLDETTQLVLLGDKDQLASVEPGAVLGEL 390 Query: 314 CAY-ANAGFTAERARQLSRLTGTHVPAGTGTEA----ASLRDSLCLLQKSYRFGSDSGIG 368 + A +TAE L+ TG +P ++ A+L + L SYRF S S IG Sbjct: 391 SSVIAPDAYTAETRNWLAATTGQTLPDSETNKSIVTDAALAQAAVQLHHSYRFDSASDIG 450 Query: 369 QLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM-------LEEALAGYGRYLDL 421 LA +N GD + T+ + + RL+ + + L LA L Sbjct: 451 ALARCVNAGDASGALTLLRTNKEQASVRLVADAAGHQPLRRIVQESLAPWLAALNEPLSA 510 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 A I A N+ Q+LCALR GP+GV GLN IE +++ + WY GRP Sbjct: 511 ENQDARASAIFAAHNKAQVLCALRHGPYGVTGLNRWIEDMLRRSGALAVTGD--WYIGRP 568 Query: 482 VMIARNDSALGLFNGDIGIALD--------RGQGTRVWFAMP-----DGNIKSVQPSRLP 528 +M+ RND AL L NG+IGI L RV F + I+ + P RL Sbjct: 569 IMVTRNDPALRLANGEIGITLPYVNPESPQSPPSLRVAFVNEIIEKGESPIRWIAPGRLT 628 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE----- 583 ET +A+TVHK+QGSEFDH+ L+LP+ PV+TREL+YTA+TRAR R +L + Sbjct: 629 ACETAFALTVHKAQGSEFDHSVLVLPAMPNPVLTRELIYTAITRARHRFTLVSAPTDTTF 688 Query: 584 RILSAAIATRTERRSGLAALFS 605 +L IA+R +R L A + Sbjct: 689 TVLKQGIASRVQRSGQLGAKLA 710 >UniRef50_B7KWK3 Helicase, RecD/TraA family n=16 Tax=Bacteria RepID=B7KWK3_METC4 Length = 750 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 140/599 (23%), Positives = 239/599 (39%), Gaps = 82/599 (13%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSH-DAGEGHVCLPLSRLENNEAS 64 L + + D + L + + + + EGH LP++RL Sbjct: 202 LARDIRGIGFKTADAIAMKLGLTKEAPQRLRAGVSFALQTAMDEGHCALPVARLTELAQK 261 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVA-RF 122 + + ++ + RGDE I+ ++L + ER +A R Sbjct: 262 LLEVEAPLIRSA----------VAEEIERGDEVIQDIIGDQACVFLRGLHAAERGIADRL 311 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRISVISGGPGTGKTTT 180 + E L + L + + + Q A + L ++ VI+GGPG GKT+T Sbjct: 312 IERASGTPPWSEIDLGKALPWVEQKTGKALSPSQAEAVRLLLASKLCVITGGPGVGKTST 371 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 + +L L + + LAAPTG+AA R+TE G +A T+ Sbjct: 372 LDSVLRILQ----AKGVHVLLAAPTGRAAKRMTEQTG-----------------LEAKTI 410 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLL P +PL+ D+LV+DE SM+D+P+M+ L+ A+P A ++ +GD DQ Sbjct: 411 HRLLEIDPKHGGFTRDEESPLNCDLLVIDETSMVDVPLMNALLKAVPPRAGLLLVGDVDQ 470 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV G VL D+ A R + L + +R Sbjct: 471 LPSVGPGQVLADVIASE-------------------------------RVPVARLTEVFR 499 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 ++S I A IN G R + + Y+ +++ G G+ ++ Sbjct: 500 QAAESRIIVNAHRINHGQMPE------------RPRPGEKADFYLIEIDDPEVGVGKLIE 547 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH-RHPHSRWYEG 479 ++ R + + Q+L ++ G G LN +++ + R+ G Sbjct: 548 IVTRRIPRTFGLDPLRDVQVLTPMQRGSLGSRNLNHELQRVLNPNPPAQVERFGWRFAPG 607 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 VM +ND +FNGD+G+ D L +A T+H Sbjct: 608 DRVMETQNDYDREVFNGDLGMVARIDDDEGAVIVTFDDREVIYPFGELDTLVPAFATTIH 667 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-RTERR 597 KSQGSE+ + + +Q ++ R L+YT VTR ++ + L + + A+ + +T+RR Sbjct: 668 KSQGSEYPAVVIPIVTQHFNMLARNLLYTGVTRGKQLVVLIGQRKAIGMAVRSGQTKRR 726 >UniRef50_D1A5Y8 Helicase, RecD/TraA family n=15 Tax=Bacteria RepID=D1A5Y8_THECD Length = 762 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 155/582 (26%), Positives = 244/582 (41%), Gaps = 85/582 (14%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLL-ATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 LS A GH LP L + A + A V E EE ++ + G P Sbjct: 242 LSQAADAGHCYLPEPNLLSETAKILQVDAEQVGPCLEELVAEEGVVRETVRTTGGNQVPA 301 Query: 101 ILCGDRLYLNRMWCNERTVARFF--------NEVNHAIEVDEALLAQTLDKLFPVSDEIN 152 + YL + E ++A + + +VD L + + Sbjct: 302 V------YLLPFYRAECSLAAALLGLLRCDADRLAAFGDVDWEAALGWLARR-TGQQLAD 354 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q+ A +ALTR+++V++GGPG GK+ TV ++ ++A ++ + L APTG+AA RL Sbjct: 355 EQRQAVQLALTRKVAVLTGGPGCGKSFTVRSVV----ELAKAKKATVLLVAPTGRAAKRL 410 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 E G +AST+HRLL QPG ++ +PL D++VVDE S Sbjct: 411 AELTG-----------------HEASTVHRLLELQPGGD-PKYDRDHPLQADLVVVDECS 452 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DL + ++L+ A+P A ++ +GD DQL SV AG VL D+ L Sbjct: 453 MLDLVLANKLVKAIPPGAHLLLVGDVDQLPSVGAGEVLRDL------------------L 494 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 +P L K +R SGI A IN G A+ F+D Sbjct: 495 AADVIPH-------------VRLTKIFRQAQQSGIVVNAHKINAGRPPAL-----TGFSD 536 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 + D + L A +D++ R + + Q+L + GP G A Sbjct: 537 FFWFGCEPPAD--SGLNPAEETAKLVVDIVARRIPARFGLDPRRDVQVLTPMHRGPAGAA 594 Query: 453 GLNERIEQFMQQKRK---IHRHPHSRWYEGRPVMIARNDSALG---LFNGDIGIALDRG- 505 LN +++ + R+ RH + G V RN+ G +FNG +G+ Sbjct: 595 SLNALLQEALTPYREGVPERRHGGRVFRPGDKVTQLRNNYDKGKAGIFNGTVGVVTGLSL 654 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 + + + + L E +A+T+H+SQGSE+ + + ++ R L Sbjct: 655 EDGTLTVVTDEDETVDYDFAELDELAHAYAVTIHRSQGSEYPAVVVPITMSAWTMLQRNL 714 Query: 566 VYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 +YTAVTRAR+ + L R L+ A+ T R + LA Sbjct: 715 LYTAVTRARKLVVLVGSRRALAVAVRTPGTGRRHTALAHRLQ 756 >UniRef50_D2B1Q1 Exodeoxyribonuclease V n=9 Tax=Actinomycetales RepID=D2B1Q1_STRRD Length = 738 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 147/619 (23%), Positives = 251/619 (40%), Gaps = 93/619 (15%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEAS 64 L + V + D + A+ + D V LS A +GH LP L + Sbjct: 193 LADDVWGIGFKTADTIAQAVGIPHDSPERVKAGLRYTLSQAADDGHCYLPAPNLVADAVK 252 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + ++ + E + + V GD P + YL E ++A Sbjct: 253 ILEVPAELTVRCLEELVAEEGVVREEVPAGDSLVPAV------YLVPFHRAELSLAGSLR 306 Query: 125 EVNHAI--------EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + + VD + + L K ++ Q A +AL +++V++GGPG G Sbjct: 307 ALLTSGHDRLGVFGSVDWQVALEWLHK-QTDAELAPEQAHAVRLALCEKVAVLTGGPGCG 365 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 K+ TV ++ +A ++ ++ LAAPTG+AA RL E G + Sbjct: 366 KSFTVRSIVT----LARAKKAKVILAAPTGRAAKRLAELTG-----------------HE 404 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 A+T+HRLL +PG NPL D++VVDEASM+DL + ++L+ A+ ++F+G Sbjct: 405 ATTVHRLLQLRPGGD-ATFDRDNPLDADLVVVDEASMLDLLLANKLVKAIAPGTHLLFVG 463 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV AG VL D+ A L Sbjct: 464 DVDQLPSVGAGEVLRDLLAAEEEI------------------------------PRVRLT 493 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 +R +SG+ A +N G A++ + G+ ++ EE Sbjct: 494 HIFRQAQESGVVVNAHRVNTGLPPALEGM---------------GDFFLFPCEEPEEIAA 538 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHRHPH 473 +D++ R + + Q+L + G G LN +++ + R+ R+ Sbjct: 539 LTVDVVANRIPRKFGLNPRRDVQVLAPMHRGAAGAGNLNNALQEALTPSREGMPERRYGG 598 Query: 474 SRWYEGRPVMIARNDSALG---LFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRLPE 529 + G V RN+ G +FNG +G+ +D ++ + L E Sbjct: 599 RVYRVGDKVTQLRNNYDKGAAGVFNGTVGVVVDIKPDDHKLTVLTDEDENVEYAFDELDE 658 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 +A+++H+SQGSE+ + L + ++ R L+YTA+TRA++ + + R L+ A Sbjct: 659 LAHAYAVSIHRSQGSEYPAVVIPLATSAWMMLQRNLLYTAITRAKKLVVIVGSRRALAQA 718 Query: 590 IATR--TERRSGLAALFSS 606 + TR R + L S Sbjct: 719 VRTRGAGRRHTSLTHRLRS 737 >UniRef50_C7PDT2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT2_CHIPD Length = 601 Score = 434 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 209/614 (34%), Positives = 318/614 (51%), Gaps = 54/614 (8%) Query: 22 QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 81 QFA PA+ A LLS EGH+CL L++ EA+ L A C + + Sbjct: 10 QFAEYFQI---PALKPYAYLLSRKLSEGHICLHLNKPV--EAAADLPAFCENMPTGSRTL 64 Query: 82 EECLLASQAVSRGD-EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 ++ V++G + P +L +RLYL R + E F ++ + ++ +LA Sbjct: 65 QQI----PLVAKGGNDSQPFVLYQERLYLQRYFRYETI---FLQRIHQFLATEKEVLADR 117 Query: 141 L----------DKLFPVS--------DEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 L LF D +WQ AA + ++I+GGPGTGKTTTVA Sbjct: 118 LKMLETHRTFISNLFAAGPAFVADGGDPADWQLSAAVTGVLNNFTIITGGPGTGKTTTVA 177 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA-STLH 241 K+LA L + ++ LAAPTGKAAAR+ ESL QLP+ D + A ST+H Sbjct: 178 KILAILYYL--DPSLKVALAAPTGKAAARMAESLRNT--QLPVDDAITAQFRSLAPSTIH 233 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 RLL ++ S ++ NPL+ DV+++DE SMID+ + ++L+DA+ + R+I LGD+DQL Sbjct: 234 RLLRSRKDSPYFVYNRENPLNYDVVILDECSMIDVALFAKLLDAVGNGTRLILLGDKDQL 293 Query: 302 ASVEAGAVLGDICAYANA--GFTAERARQLSRLTGTHVP-----AGTGTEAASLRDSLCL 354 ASVEAG++ GD+C +A FT ER ++ + L L Sbjct: 294 ASVEAGSLFGDLCQAQDALNMFTKERLALINSFIPDERRKLPDSQIKANDPHPLFQHLVE 353 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L++S+RF D GIG+ + AI D+ A+ + +++ + + +AG Sbjct: 354 LRRSHRFSGDKGIGKFSKAIIANDQVAIHGFLAPGADE---QVVIDETYSKELFAQFVAG 410 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 Y ++ + +Q N+ ++LCA+REG G+ +N IE+ + KR I ++ Sbjct: 411 YSAFI----VEKDVRKALQLLNDLRVLCAIREGEEGLYAINRNIEKILHDKRLI--RVNA 464 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETT 533 +YE RPV++ RN GLFNGD GI QG WF +G +K++ P L E ET Sbjct: 465 EFYENRPVILTRNYYEHGLFNGDTGIIRTDEQGVLMAWFEDSNGELKAILPGYLTEAETV 524 Query: 534 WAMTVHKSQGSEFDHAALILPSQRT-PVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 +AMT+HKSQGSEF +ILP + P++TREL+YT VTRA++++ + + +L Sbjct: 525 FAMTIHKSQGSEFKEVMVILPRAKDVPILTRELLYTGVTRAKQKVYVQSSAEVLLLTATR 584 Query: 593 RTERRSGLAALFSS 606 ER SG+ F+ Sbjct: 585 FVERASGIGQRFAD 598 >UniRef50_D2S7J1 Helicase, RecD/TraA family n=15 Tax=Actinomycetales RepID=D2S7J1_9ACTO Length = 754 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 162/609 (26%), Positives = 253/609 (41%), Gaps = 93/609 (15%) Query: 16 LRPLDVQFALTVAGDEHPAVTLAAA--LLSHDAGEGHVCLPLSRLENNEAS-HPLLATCV 72 R D A + P A +LS G+GH LP + L + A V Sbjct: 198 FRTADTIAAAVGIPHDSPHRVEAGVQFVLSEATGQGHCFLPETELVAQAVEVLQVPAGLV 257 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEV 132 L ++ ++ + RG EP + YL E ++A + A +V Sbjct: 258 GHCLALLVADQGVIREELPGRGGEPATAVY-----YLVPFHRAEISLAAGLRRLVDA-DV 311 Query: 133 DEALLAQTLDKLFPVS--------DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 D ++D +S + Q+ A +ALT R++V++GGPG GK+ TV + Sbjct: 312 DRMPAFASVDWTAALSWLGRRTGVELAAGQQAAVRLALTERVAVLTGGPGCGKSFTVRSI 371 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 + +A + RI LAAPTG+AA RLTE G +A T+HRLL Sbjct: 372 VT----LAAAKGARIVLAAPTGRAAKRLTELTG-----------------VEAVTVHRLL 410 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 +PG PL D++VVDE+SM+DL + ++L+ A+P A ++ +GD DQL SV Sbjct: 411 ELRPGGD-AAFDRDRPLEADLVVVDESSMLDLLLANKLVRAVPPGAHLLLVGDVDQLPSV 469 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 AG VL D+ A GT +P L + +R S Sbjct: 470 GAGEVLRDLLA-----------------EGTPIPH-------------VRLTEVFRQASR 499 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 SG+ A +N G V+ + DF ++ ++A +D++ Sbjct: 500 SGVVTNAHRVNAGSFPQVRGL--DDF-------------FLFSTDDAEEAARLTVDVVVR 544 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM---QQKRKIHRHPHSRWYEGRP 481 R + + Q+L + GP G A LNE +++ + + R R + G Sbjct: 545 RIPARFGLDPRRDVQVLTPVHRGPAGAAVLNELLQEALTPARPDRAEKRFGGRVFRVGDK 604 Query: 482 VMIARNDSALG---LFNGDIGIALDRGQGTR-VWFAMPDGNIKSVQPSRLPEHETTWAMT 537 V RND G +FNG G+ + + +G L E +A+T Sbjct: 605 VSQIRNDYDKGANGVFNGTQGVVTAIDPVEQTLTVVTDEGEQIPYDFGELDELVHAYAVT 664 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RTE 595 VH+SQGSE+ + + + ++ R L+YTAVTRA++ + L R L A+ Sbjct: 665 VHRSQGSEYPCVVIPVTTSAWMMLQRNLLYTAVTRAKQLVVLVGSTRALGQAVRVTGSGR 724 Query: 596 RRSGLAALF 604 R + LA Sbjct: 725 RHTALAHRL 733 >UniRef50_C1ACJ0 Exodeoxyribonuclease V alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ0_GEMAT Length = 579 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 218/606 (35%), Positives = 301/606 (49%), Gaps = 45/606 (7%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHP 66 L EA +R VQ T A + A L+S + G G+ C+ L+ + Sbjct: 4 LDEAFADLVVRMAAVQAGTTEALLAREVLANTALLVSAERGMGNSCVDLAAHAGRIIT-- 61 Query: 67 LLATCVSEIGELQNWEECLLASQAVSR----GDEPTPM-ILCGDRLYLNRMWCNERTVAR 121 L + + L +W + L AS +R D P+ +L G RLYL R E +A Sbjct: 62 -LGSRTVQFPALDDWGDVLRASGVCARVPHTQDANVPLFVLEGTRLYLLRYHRAEVRLAE 120 Query: 122 FF-NEVNHAIEVDEALLAQTLDKLFPVSDEI-NWQKVAAAVALTRRISVISGGPGTGKTT 179 + A V+ LFP D + +WQ AAA AL + ++GGPGT Sbjct: 121 AIVHRAQQATPVEALPDTPRFHALFPAVDGVVDWQARAAATALASPLVFVTGGPGT--GK 178 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 T + + LAAPTG+AAARL+E++G A + L + T Sbjct: 179 TTVAARLLALLLHRDPTLTFALAAPTGRAAARLSEAIGAAALRDALHELAPSLPGVSGKT 238 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 LHRLLG +QR RHHA PL DV++VDEASMID+ MM L AL AR+I LGD D Sbjct: 239 LHRLLGYHTATQRFRHHAQRPLAEDVVIVDEASMIDVLMMDALFAALKPSARLIVLGDPD 298 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QLASV+ G VLGD+ A+ +++++R S+ L S+ Sbjct: 299 QLASVDTGFVLGDVTRAAHD----------------------AVKSSAIRRSVVRLAYSW 336 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQD-FTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 RFG GIG LA A G+ Q TD+ +L +E LA + Sbjct: 337 RFGQQVGIGLLAEATRVGESQQAMRALQDTALTDVAWQLPH------RSAQELLAPVEPH 390 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 + A P + A +++LCALR+GP GV GLN E ++Q++ + WY+ Sbjct: 391 VQAFLATDTPVAALAALARFRVLCALRDGPGGVTGLNALTEGWLQRQGRAVMG----WYD 446 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 RPV++ ND+A L+NGD+G+ L V F DG ++S PS+LP HET WAMTV Sbjct: 447 HRPVLVTANDAATQLYNGDVGVTLAIDGVPMVHFPASDGGVRSFMPSQLPAHETAWAMTV 506 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEFDH ++LP + V+TREL+YTAVTRARR +++ +R++ AAI R S Sbjct: 507 HKSQGSEFDHVLVVLPEADSRVLTRELLYTAVTRARRSVTISGSDRMIEAAIHRSVVRGS 566 Query: 599 GLAALF 604 GL Sbjct: 567 GLTDRL 572 >UniRef50_D1NBM8 Helicase, RecD/TraA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBM8_9BACT Length = 734 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 155/616 (25%), Positives = 240/616 (38%), Gaps = 104/616 (16%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEAS 64 L E V+ D + L +A D + AA ++ G GHVCLPL+ L + Sbjct: 190 LAEEVDGIGFLKADEIARNLGIAPDSIDRLAAAAVFSVNTLVGNGHVCLPLAELVRQTSE 249 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT------ 118 +E G E LL D +Y ++ E Sbjct: 250 LAKQPPAQAEAGIEAAIERRLLRKL--------------DDMIYTPQLARAETELPELVA 295 Query: 119 ----VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 V +F + H + D ++ Q+ A +S+I+GGPG Sbjct: 296 SLALVKKFAGQRMHPVPGDNGIVLNQ------------EQQRAVDEVSLVPLSIITGGPG 343 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 GKTT V +++ + A+ RI LAAPTG+AA RL++S G Sbjct: 344 VGKTTVVGEIV----RRAEAAGLRIGLAAPTGRAAKRLSDSTGLT--------------- 384 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 A TLHRLL P S R + + +PL +D+L+VDE SM+D+ + L A+ V+ Sbjct: 385 --AKTLHRLLQFDPNSNRFQMDSSSPLEVDLLIVDEVSMLDILLALALFRAVRPGTSVVL 442 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL SV G VL GF Q + Sbjct: 443 VGDADQLPSVGPGTVLA--------GFLESEWFQ-----------------------VTR 471 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L + +R +S I A +NRG Q +D + +A++E+ Sbjct: 472 LVQIFRQAENSHIITNAHRVNRGLLPEKPQPGSQALSDFYWIEQDDPDKALAVIEK---- 527 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPH 473 ++ R ++ Q+L + G G +NER++ + + R Sbjct: 528 ------MVAERIPARFHFDPVDDVQILTPMNRGSCGTVAINERLQALLNPGDKPEFRFGD 581 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDG-NIKSVQPSRLPEHET 532 + G +M N+ +FNGD+G + + + +G + + Sbjct: 582 RVYRAGDKLMQTANNYEKNVFNGDLGRLGRISLKDKTFTVIFEGSRLVEYNFDEADQLTR 641 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI-- 590 +A+TVHKSQGSEF L SQ ++ R L+YTA+TRAR+ L L R + A+ Sbjct: 642 AYAITVHKSQGSEFPVVILPFLSQHYMMLQRNLLYTAMTRARKLLILVGSRRAVQMAVDN 701 Query: 591 ATRTERRSGLAALFSS 606 A R S L ++ Sbjct: 702 ARLEPRFSLLTQRLAA 717 >UniRef50_UPI00016C4690 helicase, RecD/TraA family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4690 Length = 777 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 154/621 (24%), Positives = 259/621 (41%), Gaps = 100/621 (16%) Query: 22 QFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLAT--CVSEIG 76 Q A+++ AA+ L + G GHV P L A + + + Sbjct: 223 QLAVSLGIPPDSPFRAQAAVRHVLQEETGNGHVGFPEELLREKAAELTGIEPNGIIDAVE 282 Query: 77 ELQNWEECLLAS----------------QAVSRGDEPTPM---ILCGDRLYLNRMWCNER 117 +L+ +E + S Q+ G + P I D L+L M+ E Sbjct: 283 QLRITDEIVRDSVGKATGGKVNAPPPQPQSPGEGPDGEPAKVRISEEDLLFLKPMFLAEV 342 Query: 118 TVARFFNEVN----HAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 VAR + V+ +++ ++ + Q+ A A+T ++ V++GGP Sbjct: 343 GVARSIRALAAGPHPLPSVNVEAAVNWIEQKMGIAFATS-QRAAIKAAVTNKMMVVTGGP 401 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 T ++ A+I+M + R+ L APTG+AA RL ES G+ Sbjct: 402 ----GTGKTTIVRAIIEMFLAKSLRVLLTAPTGRAAKRLNESTGR--------------- 442 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 +A T+HRLL P ++ +A NPL +D+LVVDE SM+D+ +M+RL+ A+P +A V+ Sbjct: 443 --EAKTIHRLLEFNPQQRQFTRNAENPLDVDLLVVDETSMVDVVLMNRLLQAVPPYACVV 500 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD DQL SV AG+VL D+ + Sbjct: 501 LVGDVDQLPSVGAGSVLTDLIDSKVVP-------------------------------VA 529 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ-DFTDIEKRLLQSGEDYIAMLEEAL 412 L + +R S I + A AIN G + DF +E +A Sbjct: 530 RLTEVHRQAESSWIVRAAHAINSGQEPQSAPAGGDGDFYFVEA-------------NDAD 576 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IH 469 R + +++ R + F + Q+L + GVA +N ++Q + R Sbjct: 577 TVIQRVVQMVKERIPARFNLNPFRDIQVLSPQVKTALGVANMNRELQQALNPARPGLAEV 636 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPE 529 + + G VM +N+ +FNGDIG ++ DG + S L E Sbjct: 637 QRNGETYRIGDKVMQVQNNYDREVFNGDIGRIDAIDTDEQMLVVDYDGRFVEYEFSDLDE 696 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 + ++A T+HKSQGSE+ + + +Q ++ R L+YT +TR R+ ++L + + A Sbjct: 697 LQLSFACTIHKSQGSEYPAVVIPVHTQHFVMLQRNLLYTGITRGRKLVALVGSRKAMRIA 756 Query: 590 IATR--TERRSGLAALFSSRE 608 ++T +R S L ++ Sbjct: 757 VSTADTKKRFSLLKWRIKPQD 777 >UniRef50_Q140W3 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Burkholderia RepID=Q140W3_BURXL Length = 704 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 233/655 (35%), Positives = 319/655 (48%), Gaps = 109/655 (16%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT--- 98 S EGHVC+PL+ L + L AS S G + Sbjct: 63 ASRATAEGHVCVPLALLARRFEA------------SGAEVRAALFASGMASDGSQSAAAL 110 Query: 99 -PMILCG-DRLYLNRMWCNERTVARFFNEVNHAIEVDEAL-----------LAQTLDKLF 145 P+++ G RLYL R + ER +AR A A L + L + F Sbjct: 111 RPLVVDGQGRLYLARYYDYERRLARALVAHAGAGVGTRAAPGAEAGGNAQTLHERLLRYF 170 Query: 146 --PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 P +E++WQ+VAA +AL+ +++++SGGPGTGKTTTV +LA L+ RI L A Sbjct: 171 GTPKDNEVDWQRVAAVMALSGQLTIVSGGPGTGKTTTVVGVLACLLDA--RADLRIALGA 228 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL 263 PTGKAA R+ E+L LP E R+P+ + TLHRLLG+ PG R RHH NPL Sbjct: 229 PTGKAAQRMQEALLARAGDLP--PELAARLPQTSYTLHRLLGSGPGG-RFRHHRDNPLPY 285 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 DV+V+DEASMID+ M + L+DAL R++ LGD+DQLA+VEAGAV ++ A FT Sbjct: 286 DVVVIDEASMIDVAMAAHLLDALAPQTRLVMLGDKDQLAAVEAGAVFAEL--SARPAFTQ 343 Query: 324 ERARQLSRLTGTH-------VPAGTGTEAASLRDSLCLLQKSYRF--------------- 361 E R+L+ G +P + + S + F Sbjct: 344 EGVRRLAEALGIDETRLTQALPHASRSLGEEQAGSFPQSNAPHGFEARPDDLFAYADSPE 403 Query: 362 ------------GSDSGIGQLAAAIN-----------------------------RGDKT 380 G+ S G A+N G + Sbjct: 404 VFNEPLAGELSEGAASSPGPAPHALNPLADCVVWLERNYRFGLESPIGRLSLAIRNGSSS 463 Query: 381 AVKTVFQQDFTD------IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD--LII 432 A V + D + E E +A L A Y L A PD + Sbjct: 464 AALDVLRIDPAESCAAALYEDTHATLAERTVARLAAGFAPYADALAAALAADTPDPLPLF 523 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 A N +++LCA R GP GV +N + +++ + ++W+ GRPVM+ RND ALG Sbjct: 524 DALNRFRILCATRSGPRGVDQVNAAMAAQVRRSAGVTLAVGAQWFAGRPVMVTRNDYALG 583 Query: 493 LFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 LFNGDIGIAL G RV F DG +++V P+ LP H+T +A+TVHKSQGSEF+HA L Sbjct: 584 LFNGDIGIALPGASGALRVHFRTGDGGLRAVSPAALPPHDTAFALTVHKSQGSEFEHAVL 643 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 +LPS + V++RELVYTA+TRAR R+ + +L+ AIAT T+R SGLAA + Sbjct: 644 MLPSAFSRVLSRELVYTAITRARERVEVVGARAVLAQAIATPTQRDSGLAARIAE 698 >UniRef50_B3EIT2 Helicase, RecD/TraA family n=13 Tax=Bacteria RepID=B3EIT2_CHLL2 Length = 740 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 150/576 (26%), Positives = 236/576 (40%), Gaps = 88/576 (15%) Query: 41 LLSHDAGEGHVCLPLSRLENN-EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTP 99 +L A GH +P RL A + A V E ++ V + Sbjct: 236 VLQELASSGHCAVPKERLVQESAAMLDISAPIVEEAIAVET-----GKFNLVRETIDGAE 290 Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVN------HAIEVDEALLAQTLDKLFPVSDEINW 153 + YL + E A + I++ +A++ + +S Sbjct: 291 I------FYLAPLHRAEEKTAAALAALLRGRTPWKGIDLQKAVVQIAEETGLQLS---PS 341 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A A+ LT + +VI+GGPG GKTT V +L + + + +I L APTG+AA RL+ Sbjct: 342 QKEALALVLTNKATVITGGPGVGKTTLVNAILRVIRK----KTTKILLCAPTGRAAKRLS 397 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 ES G +A T+HRLL P S + +GNPL D++VVDE SM Sbjct: 398 ESTGM-----------------EAKTIHRLLEFDPNSGGFKRSSGNPLEADMVVVDETSM 440 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D+ +MS+L+ A+P A ++ +GD DQL SV GAVL DI A Sbjct: 441 VDIVLMSKLLSAVPAKAALLLVGDADQLPSVGPGAVLTDIIA------------------ 482 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 S + L + +R + S I A IN G+ + ++ +D Sbjct: 483 -------------SDAVPVVRLTEIFRQAARSQIIVNAHRINNGEIP--RNAEGEELSDF 527 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 Q+ E+ A L + ++ R + Q+L + G G Sbjct: 528 YVVNSQTPENIHAKL----------MQMVTERIPARFGFHPVRDIQVLTPMNRGGLGSRA 577 Query: 454 LNERIEQFMQQKRKIH-RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF 512 LN +++ + + S + G V+ N+ +FNGDIG Sbjct: 578 LNAELQKALNGSAEPKVSRFGSIFSPGDKVIQMVNNYDKEVFNGDIGAITAIDTEESELT 637 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 D + S L E +A ++HKSQGSE+ + L Q ++ R L+YTAVTR Sbjct: 638 VDFDKRPVRYEFSELDELALAYATSIHKSQGSEYLAVVIPLAMQHFTLLERNLIYTAVTR 697 Query: 573 ARRRLSLYADERILSAAIATRT--ERRSGLAALFSS 606 ++ + + A + L+ A+ R R + LA + Sbjct: 698 GKKLVVIIAQPKALALAVTNRKADRRMTTLALKLTE 733 >UniRef50_A4XG10 ATP-dependent DNA helicase, RecD/TraA family n=2 Tax=Clostridia RepID=A4XG10_CALS8 Length = 741 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 161/631 (25%), Positives = 265/631 (41%), Gaps = 110/631 (17%) Query: 7 LLEAVEHKQLRPLDV-QFALTVAGDEHPAVTL-AAALLSH-DAGEGHVCLPLSRLENNEA 63 LL+ + +D F L V+ D+ ++ LL+ EGH+CLP +L + Sbjct: 182 LLDVFPELDFKKVDRLAFDLGVSPDDMRRISAKIVNLLNMGSNNEGHICLPKEKLILFVS 241 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR-- 121 T E + + + A + V + M+ +L + ER +A Sbjct: 242 KALEQDTEKVE----EALDSLIKAKRVVIDTVDGLEMV------FLYGFFECERYIAEKI 291 Query: 122 --FFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 E + +++DE + S QK A +ALT+ +SVI+GGP T Sbjct: 292 ASMLKEYDDILDIDERISEFEKKNSIVFSQN---QKKAIKMALTQGVSVITGGP----GT 344 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 ++ +I++ + E ++ L APTG+AA R+ + K +A T Sbjct: 345 GKTTIIKCIIEIFEQEGKKVFLCAPTGRAAKRMQQQCEK-----------------EAKT 387 Query: 240 LHRLLGAQPGSQR--LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 +HRLL + + NPL DV++VDE SM+D +M L+ A D R++ +GD Sbjct: 388 IHRLLEMTVTDSQVFFQKGPNNPLRCDVIIVDEMSMVDSYIMYYLLSATKDTTRLVLVGD 447 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 +DQL SV AG +L D+ + L + Sbjct: 448 KDQLPSVGAGNILKDLIRSDVVPY-------------------------------VRLTE 476 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 YR DS I A IN G+ ++ DF I+K S E+ + + Sbjct: 477 VYRQSEDSFIVLNAHRINNGEFPYLQK--NSDFYFIQKN---SPEEILKTI--------- 522 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHS 474 ++L+ + L + Q+LC ++G G+ +N ++Q++ K +K + + Sbjct: 523 -VELVTKKLPNYLSADPLTDIQVLCPSKKGVVGMYNINRVLQQYLNPKDGSKKEVVYKEN 581 Query: 475 RWYEGRPVMIARNDSAL---------------GLFNGDIGIALDRGQ-GTRVWFAMPDGN 518 + G VM +N+ +L G+FNGDIG+ D + G+ + D Sbjct: 582 TFRVGDKVMQIKNNYSLEFTIIEGEEKGKVSTGIFNGDIGVIKDIDRAGSAMEIVFDDDK 641 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 + S L + E ++AMTVHKSQGSEF + + ++TR L+YTAVTRA+ + Sbjct: 642 LVFYDFSLLDDLELSYAMTVHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVV 701 Query: 579 LYADERILSAAIATRTE--RRSGLAALFSSR 607 L + L IA + E R S L + Sbjct: 702 LVGKKSALEYMIANQKEAMRYSALYDFLKRK 732 >UniRef50_B0B9E0 Exodeoxyribonuclease V alpha chain n=15 Tax=Chlamydiaceae RepID=B0B9E0_CHLT2 Length = 746 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 134/569 (23%), Positives = 236/569 (41%), Gaps = 81/569 (14%) Query: 42 LSHDAGEGHVCLPLSR--LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTP 99 L EGH C PL+ + + + + E++ L + V + Sbjct: 223 LDELQEEGHTCYPLNDFIVLVEKLLNEEAPEEIIRKEEIRTQIHFLSRQKTVYVKELE-- 280 Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVN------HAIEVDEALLAQTLDKLFPVSDEINW 153 ++ +++ E+ +A + +I EA+L ++ L + E Sbjct: 281 ---QDTYIWSRQLFLAEQQIAIDIRRLLFSSKRIRSINTQEAILE--VENLLDLKLE-EK 334 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 QK A + +++I +ISGGPGTGK+T +L+ +++ +I LAAPTGKAA R+T Sbjct: 335 QKEALHASSSQKIHIISGGPGTGKSTITRAILSIFEKIS--SPKKIILAAPTGKAAKRMT 392 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 E GK T+H LL + R + +P+ D+++VDE+ M Sbjct: 393 EITGKRT-----------------QTIHSLLQYDFKTLSFRKNHEDPIDCDLVIVDESGM 435 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 ID ++ R + ALPDHA +I +GD QL SV G VL D+ + Sbjct: 436 IDTILLQRFLAALPDHAILILIGDVHQLPSVGPGNVLKDLILSHHIE------------- 482 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 + L K +R +S I A +N+G+ + + + Sbjct: 483 ------------------VTYLTKIFRQLQNSNIITNAHKVNQGEFPVLNSSSGK----- 519 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 +D++ +E +++ L + P + Q+L +R+G G+ Sbjct: 520 --------KDFLFFQKEDPEEAIKHIIHLVSDFVPKKFGIFTKDIQVLAPMRKGVLGILN 571 Query: 454 LNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFA 513 LN ++ + + + + G VM RN+ +FNGDIG T+ Sbjct: 572 LNRELKAALNPNKLFIQGKFHSFSTGDRVMQTRNNYNKEVFNGDIGYVTSIDLSTKSLIV 631 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 DG S + L + +A ++HK QGSE L + + ++ R L+YTA+TR Sbjct: 632 CVDGRYISYSQAELNDLIPAYATSIHKYQGSETSCIILPIHTSHYVMLYRNLLYTAITRG 691 Query: 574 RRRLSLYADERILSAAIAT--RTERRSGL 600 ++ + L ++ ++ A+ R +GL Sbjct: 692 KKLVILVGTKKAVAIAVRNDKVQHRCTGL 720 >UniRef50_B1I2W6 Helicase, RecD/TraA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2W6_DESAP Length = 688 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 160/602 (26%), Positives = 250/602 (41%), Gaps = 98/602 (16%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDA--GEGHVCLPLSRLENNEAS 64 L E R D+ +A D V + +++ EGH LP L + + Sbjct: 175 LTELDLIGFHRADDIARRAGLAPDSSFRVKAGILYVLNESLWDEGHAYLPRDELISRSLT 234 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 L V + L E+ L + V E + L R E +AR Sbjct: 235 ---LLNHVEKSVSLDIVEKELSRLKGVHGSAEVS--------LAWAR--EYEEEIARDVK 281 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 + D L + L + ++ + Q A AL S+++GGPG GKT TV + Sbjct: 282 RLARQ-RFDVPPLPRDLIRGIELTPD---QNAAVKTALESGFSILTGGPGVGKTQTVRAV 337 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 + A + L APTG+AA RL+E G+ A T+H+LL Sbjct: 338 IRAFE--LQNPWGGVFLCAPTGRAARRLSEVTGR-----------------QAHTVHKLL 378 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 G + G + NPL D+L++DEASM L + RL++A+P++AR++F+GD DQL SV Sbjct: 379 GLRNG--HADRNRKNPLECDLLILDEASMACLVLTKRLLEAVPNNARILFVGDADQLPSV 436 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 G +L D+ L + +R ++ Sbjct: 437 GPGNILRDLLDKV---------------------------------PTVRLTEIFRQAAE 463 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 S I A INRG + + DF +E+ + ED + +G Sbjct: 464 SQIVTNAHRINRGQMPLIDR-SKTDFIFLER---EDPEDIAKCVATCASG---------- 509 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 + + Q+L +R+GP G A LN+ I+ M R ++ ++ G V+ Sbjct: 510 -----MGYDPL-DVQVLSPMRKGPVGTAELNKLIQGGMSGPR--VKYGQYVFHVGDKVIH 561 Query: 485 ARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 +N+ G+FNGDIGI V G + S L E E WA+TVHK+QGS Sbjct: 562 TKNNYDKGVFNGDIGIIKKIKMQHDVLVQYSSG-LVSYSGDDLRELEPAWAVTVHKAQGS 620 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAA 602 EF + + + ++ R L+YTAVTRAR ++ L ++ L+ A+ +R + L+ Sbjct: 621 EFKAVIIPVTTSHYVMLHRNLIYTAVTRAREKVILVGTKKALAIAVRNNKPIQRYTALSG 680 Query: 603 LF 604 L Sbjct: 681 LL 682 >UniRef50_A6DHN1 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN1_9BACT Length = 737 Score = 424 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 142/608 (23%), Positives = 246/608 (40%), Gaps = 86/608 (14%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH---DAGEGHVCLPLSRLENNE 62 L E++ D A + + A+ ++ + +GH C+P L N Sbjct: 200 ILAESIRGIGFIQADK-LAQNLGIEATNPFRTASGIVHTVKVQSQDGHTCMPREFLLNKA 258 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 + + T L+ + + + + LY + +E ++ Sbjct: 259 SEMLKVDTANI----LEGLQRAIKDGSIIEEVHQEM------SYLYERHLHNDEESL--- 305 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + + I++D+ + F S+ QK A + +R+S+I+GGPG GKTTTV Sbjct: 306 LDHLLGFIKLDKQYPHAQSEVDFLNSELNTEQKQAVNTSFNKRLSIITGGPGVGKTTTVK 365 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 +++ Q + +I+LAAPTG+AA RL E+ G A T+HR Sbjct: 366 EIV----QQSRKHGKKIKLAAPTGRAAQRLGEASGAR-----------------ALTIHR 404 Query: 243 LLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH-ARVIFLGDRDQ 300 LL + S+ + L D+LVVDE SM+D+ + +L A+ + ++ +GD DQ Sbjct: 405 LLMSDSESEGEFVFNEYKKLKCDILVVDEVSMLDISLARKLFAAIDHNETHLVLVGDPDQ 464 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV G VL D+ L L + +R Sbjct: 465 LPSVGPGFVLNDLIESQLIP-------------------------------LTALHQVFR 493 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 S S I A IN G + ++ + + D D E M+ + Sbjct: 494 QASSSRIITNAHRINLGQEPDLRQI-EGDHNDFYFIHQDDPEKLFPMISK---------- 542 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYEG 479 +++ R I A + Q+L + G G LN +++ + +K SR+ G Sbjct: 543 MIKERIPQKFDISA-KDIQILMPMNRGKCGCEALNLYLQEDLNDIHKKQFNFGKSRFILG 601 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 V+ N+ +FNGD+G +D + + DG S + +A+T+H Sbjct: 602 DRVIQTVNNYTKKVFNGDMGYIVDIYNEEKSFIIDFDGLQVSYDFEEAEQIRLAYAITIH 661 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERR 597 KSQGSEF + + + ++ + L+YTA+TRA+ L L + + +S IA + ++R Sbjct: 662 KSQGSEFPAVIVPMNTSHYIMLKKNLLYTAITRAKELLVLCSSRQAISQCIANKGMSKRF 721 Query: 598 SGLAALFS 605 + L Sbjct: 722 TLLKYKLQ 729 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 152/620 (24%), Positives = 242/620 (39%), Gaps = 104/620 (16%) Query: 24 ALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEAS--HPLLATCVSEIGEL 78 A + + V L + + LS A EGHV +L ++ V + ++ Sbjct: 453 AEKLGFQKESFVRLRSGIMYTLSSLADEGHVYAGRDQLIRKAVQLLEAEESSIVMTLDQM 512 Query: 79 QNWEECLLASQAVSRGDEPTPMILCG--------------DRLYLNRMWCNERTVARFFN 124 ++ + + + M G D +YL + E +A Sbjct: 513 IADKDVIREKITQTEPEASVQMYPEGREGQRADREENGTIDAIYLPPFYYAETGIADRLK 572 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDEI----------------NWQKVAAAVALTRRISV 168 + D + + + E+ Q A A T ++ + Sbjct: 573 RLAETPAQDRLWVQLMQARKQTGNPELSIDVSHIEKKIHMEYDEIQADAIRKAATSKVMI 632 Query: 169 ISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE 228 ++GGPGTGKTTTV +LAA +I LAAPTG+AA RL E+ G Sbjct: 633 LTGGPGTGKTTTVQGILAAY----RAFGLKILLAAPTGRAAKRLEETTGM---------- 678 Query: 229 QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 +A T+HRLL +P + + + +PL DVLVVDE SMID+ +M+ L+ A+P Sbjct: 679 -------EAKTIHRLLEYKP-PEGYQKNEEHPLEGDVLVVDECSMIDIILMNALLKAVPP 730 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 R + +GD DQL SV AG VL D+ Sbjct: 731 GMRFVLVGDVDQLPSVGAGNVLRDMMDSG------------------------------- 759 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 + L + +R S I A IN G + DF IEK Sbjct: 760 CFPVIRLTRIFRQAQTSRIVMNAHRINEGRLPDISNGNDADFFFIEK------------- 806 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI 468 EE ++L+Q + ++ Q+L +++G G A LN +++ + + + Sbjct: 807 EEPEEAVAEIVNLVQQKLS-RFYHTPVSQIQVLTPMQKGAVGAANLNLALQEALNPQGEG 865 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLP 528 R + VM +N+ +FNGDIG G R DG I S L Sbjct: 866 LRRSGFVYRMDDKVMQIKNNYDKEVFNGDIGFIESVDVGARTLKVSFDGRIVEYDASELD 925 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSA 588 E +A T+HK+QGSE+ + + ++ R L+YT +TRA++ L + ++ L+ Sbjct: 926 ELVHAYATTIHKAQGSEYPIVVMPVLMNHYVMLQRNLIYTGITRAKKILVMVGTKKALAY 985 Query: 589 AIAT--RTERRSGLAALFSS 606 A+ T+R + L Sbjct: 986 AVRNVTVTKRNTLLKERLQD 1005 >UniRef50_D0LH80 Helicase, RecD/TraA family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LH80_HALO1 Length = 768 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 152/600 (25%), Positives = 251/600 (41%), Gaps = 95/600 (15%) Query: 25 LTVAGDEHPAVTL-AAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE 83 L +A D + +L A +GHV +P L + A + + + Sbjct: 242 LGMARDAPERLEAGLIHVLGKLAEDGHVHVPEPNLLDTAAGILEVDAMLLPEALDRLETS 301 Query: 84 CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV------NHAIEVDEALL 137 L+ +A+ G + L +W +E A + + +++D+AL Sbjct: 302 QLVVCEALGD---------RGTCVSLTFLWQHESDAAARYAALVETPMRPRKLDLDQALA 352 Query: 138 AQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 A + ++ E Q+ AA A+ + V++GGPG GKTT V ++ ++ Sbjct: 353 AFEAEAELALTAE---QRRAALAAVMDKSVVLTGGPGVGKTTIVRAIVFLFERLGRS--- 406 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 + LAAPTG+AA RL ES + DA+T+HRLL QP A Sbjct: 407 -VTLAAPTGRAAKRLAESTAR-----------------DAATIHRLLEFQPAGGGFFRSA 448 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL DV+++DE SM+D+ +++ L+DA+P A+++ +GD DQL SV GAVL D+ A Sbjct: 449 DNPLDSDVVIIDETSMVDIALLAALLDAMPASAQLVLVGDIDQLPSVGPGAVLADLIA-- 506 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 S ++ L + +R +S I A IN G Sbjct: 507 -----------------------------SRAATVVRLTEIFRQARESRIVMAAHEINSG 537 Query: 378 DKTAVKT-----VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 + + DF I + E+ + +DL+ R Sbjct: 538 MVPQLAPPQGTSAHRSDFYFISR-------------EQPVRARETIVDLVAERIPEAFGF 584 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDS 489 + Q+LC + G G LN +++ + ++ + G VM ND Sbjct: 585 DPLADIQVLCPVHRGELGTIALNRALQERLTPAVDEQHQVTRGERSYRVGDKVMQLENDY 644 Query: 490 ALGLFNGDIGIALDR-GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 G+FNGDIG+ + G+ +V DG + + L + +A++VHKSQGSE+ Sbjct: 645 DRGVFNGDIGVIFEIAGERKKVLVDYMDGRVVGYEARDLDQLTHAYAISVHKSQGSEYPV 704 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSS 606 L L +Q ++ R L+YTAVTR + + + + + A+ +T R + LA Sbjct: 705 VVLPLATQHYIMLQRNLLYTAVTRGKSLVVIVGSAKAVRRAVENQTNTARWTWLAERIRE 764 >UniRef50_B0MLK7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLK7_9FIRM Length = 753 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 141/615 (22%), Positives = 245/615 (39%), Gaps = 102/615 (16%) Query: 16 LRPLDVQFAL--TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 R +D A A + +L +A GH CLP +L + C + Sbjct: 199 FRSVDRMAADLGFDAENSDRVRAGIVYVLHENANAGHTCLPTEKLRE--------SVCDN 250 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILCGDR--LYLNRMWCNERTVARFFN-EVNHAI 130 E + +E CL + + I G R +YL + E +A+ + + Sbjct: 251 LGIERRQFESCLDDCEE----KDWVVRITLGKREFVYLPEYYLAETYIAKKLAFMLRTSA 306 Query: 131 EVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 + ++ + F + + Q+ A + LT + +++GGP T L +I Sbjct: 307 QYEKDYSDEIRGVEFSENIQYEDLQRAAISACLTGSVFILTGGP----GTGKTTTLNGVI 362 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP- 248 ++ ++ RI L APTG+AA R+++ G E A T+HRLL Sbjct: 363 KILKAQKKRILLCAPTGRAAKRMSDLTG-----------------EPARTIHRLLEVDFT 405 Query: 249 --GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 G + + + NPL DV++ DE SM+D +M L+ A+ ++ I +GD +QL SV A Sbjct: 406 AKGELKFKRNETNPLPADVVIADEMSMVDALLMCSLVRAIKPTSKFIMVGDSNQLPSVGA 465 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G VL D+ A ++P+ L++ +R + S Sbjct: 466 GNVLKDLIA------------------SHYIPS-------------VELKEIFRQAAQSL 494 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I A I G+ + Q DF + K L G + L + R Sbjct: 495 IVTNAHRIVNGEFPVLDD-RQNDFFFMNKSLESDIA-------------GLVIQLAKQRL 540 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVM 483 ++ Q+LC + G G LN++++ + + + + G VM Sbjct: 541 PDTYGFSPIDDIQVLCPTKMGMAGTKELNKQLQSALNPPSQNKAELKFFDVIFRTGDKVM 600 Query: 484 IARNDSAL----------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 +ND + G+FNGDIGI + ++ +G + L E Sbjct: 601 QTKNDYDVLWTKNNEKGSGIFNGDIGIIRSVDRFSQNVTIDFEGRVAIYTSEMLRRLEHA 660 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +A+T+HKSQGSE+D + + + ++ R L+YT VTRA++ + + + ++ + Sbjct: 661 YAITIHKSQGSEYDAVIIPITAFTHNLLYRNLLYTGVTRAKKMIIVIGTKELVKTMVDNN 720 Query: 594 TE--RRSGLAALFSS 606 + R S L L Sbjct: 721 RKMLRYSLLRPLLEK 735 >UniRef50_B8J4Q4 Helicase, RecD/TraA family n=9 Tax=Bacteria RepID=B8J4Q4_DESDA Length = 749 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 141/616 (22%), Positives = 241/616 (39%), Gaps = 86/616 (13%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL--LSHDAGEGHVCLPLSRLENNEAS 64 L + D +HP A L L +G+V LP + L Sbjct: 206 LAMDIHGIGFVTADAAARKLGFEHDHPLRVQAGTLYVLQKATDDGNVYLPQTALME---- 261 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM---ILCGDRLYLNRMWCNERTVAR 121 + A + + + L A + + R D P +YL R + E A Sbjct: 262 -AVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGTQPETGVYLRRYFHCESKTAF 320 Query: 122 FFNEVNHAI-----EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + + + E +AL+ + + +L Q A + ++ V++GGP Sbjct: 321 YLQRLMRSPKSIRFENPDALVDKVVGEL--NISLAPEQLEAVRTSARSKVMVLTGGP--- 375 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T ++ A+I++ R RI LAAPTG+AA R+ E+ G+ + Sbjct: 376 -GTGKTTIINAIIRLFAEVRARILLAAPTGRAAKRMAETSGR-----------------E 417 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 + T+HRLL P + +PL +LVVDEASM+D + L+ A+P A ++ +G Sbjct: 418 SRTIHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVG 477 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D QL SV G VL DI A + L Sbjct: 478 DVHQLPSVGPGNVLADIIASGVVP-------------------------------VVELT 506 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ--DFTDIEKRLLQSGEDYIAMLEEALAG 414 + +R ++S I A INRG+ ++++ + DF I + + D + Sbjct: 507 EIFRQSAESEIICNAHLINRGEVPSLESSKDRLSDFYFIHQNDPEKAADLM--------- 557 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 +DL++ + ++ Q+L + +G G +N R+++ + R Sbjct: 558 ----VDLVRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEALNPNGLEVRRGER 613 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 + VM RN+ +FNGD+G R D + + L E + Sbjct: 614 AFRLHDKVMQIRNNYDKDVFNGDMGRISFLDLADRTLSVTFDERVVPYEFDELDELAPAY 673 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 A+++HKSQGSE+ + + Q ++ R L+YT TR ++ + L + R L A+ Sbjct: 674 AISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVGESRALHMAVKNNK 733 Query: 595 --ERRSGLAALFSSRE 608 +R + LA + E Sbjct: 734 TRKRYTRLAERLAPGE 749 >UniRef50_D2RL74 Helicase, RecD/TraA family n=2 Tax=Acidaminococcus RepID=D2RL74_ACIFE Length = 721 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 164/616 (26%), Positives = 246/616 (39%), Gaps = 100/616 (16%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEA 63 L E VE R D A + DEH + A + L AG+GH C+P S L N A Sbjct: 185 LAEDVEGIGFRTAD-ALARNLGMDEHGDERIRAGIHYTLLQGAGQGHTCVPDSWLVGNAA 243 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + Q + LL ++ RGD +Y ++ E VA Sbjct: 244 RVLQVDPLEVRQVFDQLLRDNLLRAE--DRGDHV--------CVYPEYLYRAEEGVAHRL 293 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVSDEIN---WQKVAAAVALTRRISVISGGPGTGKTTT 180 + + + Q + + + + I Q A ++ + V++GGPG T Sbjct: 294 LALRDNVNALWKVDYQKIIREWERDERIRLAPEQAEAVKASVDHGVFVLTGGPG----TG 349 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 ++ ++ + + C+I LAAPTG+AA RL+ES GK A T+ Sbjct: 350 KTTVVKGILSVMEQAGCKILLAAPTGRAAKRLSESAGK-----------------PALTV 392 Query: 241 HRLLGAQPGSQRLR---HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 HRLL P + + NPL D ++VDEASM+D+ +M L+ ALP R+I +GD Sbjct: 393 HRLLEYTPNGEGDSFWGRNEDNPLEADAVIVDEASMMDIVLMYNLLKALPLGCRLILVGD 452 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 DQL SV G+VL DI + L+ Sbjct: 453 VDQLPSVGPGSVLQDIIRSGTMP-------------------------------IVRLEN 481 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 +R S I + A IN+G + ++DF E + YI L LA Sbjct: 482 VFRQAELSPIVRNAHRINQGLMPQWEG--EKDFRFREFATEEETMHYIVDLYVHLAAR-- 537 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW- 476 Q + Q+L + + GV LN ++ M + + Sbjct: 538 ---------------QPQDAIQVLTPMHKNLCGVENLNNMLQARMNPPSPEKQEYRGSFL 582 Query: 477 --YEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPD---GNIKSVQPSRLPEHE 531 EG VM RN+ +FNGDIG QG V PD G + + + + + Sbjct: 583 LLREGDKVMQIRNNYDKNVFNGDIGRICSI-QGAHVTVDFPDRAEGEAVTYEGAEVSDLR 641 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +AM+VHKSQGSE+ + L ++ R L YTA+TRA++++ L R L A+ Sbjct: 642 LAYAMSVHKSQGSEYAVVLMPLVLSHYILLQRNLFYTAITRAKKQVYLAGSRRALRTAVE 701 Query: 592 TR--TERRSGLAALFS 605 +R S LA Sbjct: 702 NDRTRKRYSLLAERLK 717 >UniRef50_B8FBC1 Helicase, RecD/TraA family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FBC1_DESAA Length = 730 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 137/609 (22%), Positives = 228/609 (37%), Gaps = 76/609 (12%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL---SHDAGEGHVCLPLSRLENNE 62 +L E V D A + L A +L S + GH LP L + Sbjct: 180 KLAEDVAGIGFSTADG-IARKMGIPADSPKRLEAGVLHALSRASNNGHFYLPREELIHEA 238 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 AS + W+ + ++ E P+ D +YL + E +AR Sbjct: 239 ASLLDQNPSDVDNILSGMWQTGKVIFDKITDDPEN-PL----DIVYLTAYYATEVGLARR 293 Query: 123 FNEVNH-AIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTT 179 + + + + L+++ Q RISVI+GGP T Sbjct: 294 IQAFLTVPLNLKKIKAEEALERVHQRFAIRLSEEQLDVLEKIFGSRISVITGGP----GT 349 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 L+ ++ + + APTG+AA RL E + DAST Sbjct: 350 GKTTLVRSVQLLFSAMGKSVLQVAPTGRAAKRLAEVTSR-----------------DAST 392 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +HR L + + + PL DV++VDEASM+D +M LI A+P +A +I +GD Sbjct: 393 IHRALAYDFKTGKFFRNEEEPLDADVIIVDEASMVDAFLMYHLIKAIPMNAVLILVGDVS 452 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL V G L DI + L K + Sbjct: 453 QLPPVGPGNALRDIIESGQVP-------------------------------VFHLTKIF 481 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R + S I + A +N G+ D + + + + Y + L Sbjct: 482 RQAAQSLIIRNAHRVNAGE----------DLVTVRDQSKEDPDFYFLSENDQERMVSLVL 531 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 + + R + Q+L + +GP G LN ++++ + + + G Sbjct: 532 TMCRERIPNRFGFDPMTQIQVLTPMHKGPAGTINLNRQLQKILNPGPDLITRGEQCFRAG 591 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 VM +N+ + +FNGDIG + ++ D S + E +A+++H Sbjct: 592 DKVMQIKNNYSKEVFNGDIGAITNVSPSSKSVVVEFDAGPVPYTFSEMEELVLAYAISIH 651 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERR 597 KSQGSE+ ++L + ++ R LVYT +TRA+R + L ++ +S A+ T R Sbjct: 652 KSQGSEYPAVIMLLSTAHYALLQRNLVYTGITRAKRLMVLVGSQKAVSLAVGNDTPSRRA 711 Query: 598 SGLAALFSS 606 + LA Sbjct: 712 TRLAHRLRQ 720 >UniRef50_A9KS02 Helicase, RecD/TraA family n=32 Tax=Bacteria RepID=A9KS02_CLOPH Length = 742 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 143/634 (22%), Positives = 252/634 (39%), Gaps = 109/634 (17%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEAS 64 L E + + D + + + D V L +G GHV LP+ L Sbjct: 182 LAEDISGVGFKIADEIASRIGIRTDSDYRVKAGILYNLLLASGNGHVYLPMHSLVGKTCE 241 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 ++ + L V E +Y + E VA + Sbjct: 242 MLMVEADTVKRHITSL---ALEKKLVVKESGEE-------QHVYSTSFYYMELNVANMLS 291 Query: 125 EVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 +++ + ++ A + L K+ + + Q+ A A+ + +I+GGP T Sbjct: 292 DLSISYDISPAQVETRLAKIEQETNLELDEMQRYAVMEAVRSGLLIITGGP----GTGKT 347 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 + +++ + E + LAAPTG+AA R+ E+ G +AST+HR Sbjct: 348 TTINTILRFFEAEGMDMLLAAPTGRAAKRMKETTG-----------------YEASTIHR 390 Query: 243 LLGA------QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 LL + G + NPL DV+++DE SM+D+ +M L+ A+ R+I +G Sbjct: 391 LLELTKGMDDKDGRMSFERNELNPLEADVIIIDEMSMVDISLMHSLLKAITVGTRIILVG 450 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D +QL SV G VL D+ + +L+ Sbjct: 451 DVNQLPSVGPGNVLRDMIESKAFP-------------------------------VVMLK 479 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 K +R S+S I A IN G+ + +D+ + + + Sbjct: 480 KIFRQASESDIIVNAHKINSGEHITLDN---------------KSKDFFLLKRDDVNVII 524 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPH 473 + L P + + + Q+L +R+G GV LN+ ++Q++ ++K H Sbjct: 525 SVIISLVRDKMPKYVNASVYDIQVLTPMRKGELGVERLNQVLQQYLNPSSQEKKEKEHFG 584 Query: 474 SRWYEGRPVMIARNDSA----------------LGLFNGDIGIALDRG-QGTRVWFAMPD 516 + EG VM +N+ G+FNGD G+ + + + Sbjct: 585 GIFREGDKVMQVKNNYQIAWETKSRYGITIDSGTGVFNGDTGVIKEINLFAEELTVEFDE 644 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 G + + S+L E E +A+T+HKSQGSE+ L + S + R L+YTAVTRA++ Sbjct: 645 GRLVTYPFSQLEELELAYAVTIHKSQGSEYPAVVLPIYSGPRMLFNRNLLYTAVTRAKQC 704 Query: 577 LSLYADERILSAAIATRTE--RRSGLAALFSSRE 608 +++ + ++ + I +E R SGL + R+ Sbjct: 705 VTIVGSDNMVQSMIDNESELKRYSGLQSRIMERK 738 >UniRef50_A6L5S1 ATP-dependent exonuclease V, alpha subunit-helicase superfamily I member n=7 Tax=Bacteria RepID=A6L5S1_BACV8 Length = 753 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 146/568 (25%), Positives = 228/568 (40%), Gaps = 85/568 (14%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMI 101 L+ A EGHV +L +A++ + + Sbjct: 220 LNQLANEGHVYAEEEQLVQAALELLEADEAPIR--------------EALNNMVQTDDLK 265 Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAA 159 L + +YL + E + E + + L + + Q A Sbjct: 266 LEDEAIYLPPFYFAEVGTTNRLQALLRESEQNLFAKKVDVQALSKETGIEYDEVQLQAIE 325 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 A+ ++ V++GGPGTGKTTT ++AAL M RI LAAPTG+AA R++E+ G Sbjct: 326 EAIRSKVMVLTGGPGTGKTTTTQGIIAALKHM----GLRILLAAPTGRAAKRMSEATGM- 380 Query: 220 LRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 ++ T+HRLL P + + NPL D L+VDE SMID+ +M Sbjct: 381 ----------------ESKTIHRLLEFNPKDG-YKRNDENPLEGDALIVDECSMIDIILM 423 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 + L+ A+P RV+F+GD DQL SV AG VL DI Sbjct: 424 NNLMKAIPSSMRVVFVGDIDQLPSVGAGNVLRDIIESEKIP------------------- 464 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 + L + +R S I A AIN+G Q DF I++ + Sbjct: 465 ------------VIRLTRIFRQAQTSRIVMSAHAINQGRFPDTSNGKQTDFFFIQQEEPE 512 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 + I ++L++ R P Q + Q+L ++ G G A LN ++ Sbjct: 513 KVAEEI-------------VNLVKNRL-PKAYSQGVSNIQVLTPMQRGVVGAANLNMALQ 558 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNI 519 + + + +G VM RN+ +FNGD+G R + Sbjct: 559 NALNPSQIALNRGGYSFRQGDRVMQLRNNYDKDVFNGDLGYVESVDMEERTLLVNFEERQ 618 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + S L E +A T+HKSQGSE+ + + ++ R LVYT +TRA++ L Sbjct: 619 VEYEASELDELTLAYATTIHKSQGSEYPIVVMPVLMTHYVMLQRNLVYTGITRAKKICVL 678 Query: 580 YADERILSAAIATRT--ERRSGLAALFS 605 ++ LS AI + +R + L + Sbjct: 679 IGTKKALSFAIRNMSVLKRNTKLKERLN 706 >UniRef50_C9RK23 Helicase, RecD/TraA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK23_FIBSS Length = 691 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 146/585 (24%), Positives = 229/585 (39%), Gaps = 88/585 (15%) Query: 29 GDEHPAVTLAAALLSHDAG--EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLL 86 D A +A +GHV LP + L + L + G + + Sbjct: 185 KDSPERFQAALLYTLQEASVSDGHVFLPKNVLLERTFRNLRLMQD--DEGAINTLLDEFE 242 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKL-- 144 + R + GD Y ++ E+ +A E+ L + Sbjct: 243 KASECGR------ITREGDDCYFPPLYNAEQRIADNIKLRLRYNELSTEGFEDALAQWER 296 Query: 145 ---FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRL 201 F QK A +AL+R+IS+I+GGP T +L ++ +A + L Sbjct: 297 EHKFSFD---PIQKRAIQMALSRKISIITGGP----GTGKTTILKGILYLARQMEECVSL 349 Query: 202 AAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPL 261 APTG+AA R+ E G E A T+HRLL P S + N L Sbjct: 350 TAPTGRAAKRMGECCG-----------------EKARTIHRLLEVDPISGKFHRDGDNKL 392 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 ++L+VDE SM+D + + L++A P +AR++ +GD DQL SV AG VL D+ Sbjct: 393 QCNLLIVDEFSMVDTWLAASLLEATPLNARIVLVGDADQLPSVGAGNVLNDLLRCPKIPS 452 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 T LQ +R + I A+ IN+G + Sbjct: 453 T-------------------------------RLQHIFRQAGGNDIADKASKINQGISPS 481 Query: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 + +F + +D IA L R + I E QLL Sbjct: 482 --PIEGTNFHFLPYESADEAKDIIARL--------------VTRGIKEKIDINTQEMQLL 525 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 +R+GP G+ LN ++ + ++ + W G VM RN+ +FNGD+GI Sbjct: 526 TPMRKGPLGIYELNNFLQDLLNPGKERIKIASGNWSTGDRVMQIRNNYDKNVFNGDVGII 585 Query: 502 LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 G+ T+ D +P E +A T+HKSQGSE+ ++L S + ++ Sbjct: 586 YKIGKDTKKITVFYDDKTVDYEPDEADELILAYACTIHKSQGSEYPAVIVVLDSSHSIML 645 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALF 604 R L+YTA+TRA+ + + + A+ T R + L Sbjct: 646 QRNLIYTAITRAKGHVWILSAPGAFYQAVRNNRSTRRYTRLTEKL 690 >UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Actinomycetales RepID=C1RHS1_9CELL Length = 1794 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 210/623 (33%), Positives = 315/623 (50%), Gaps = 37/623 (5%) Query: 6 QLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRL---- 58 L + L DV+ A + G++ P V LAAAL G VC+ L+ Sbjct: 1177 LLTTFADAGVLTSADVRVAERLGDLTGEDDPTVHLAAALAVRAVRAGSVCVDLADAPSLV 1236 Query: 59 ---ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP---TPMILCGDRLYLNRM 112 ++ PL A + + W + S V+ G + P+ R+YL+R Sbjct: 1237 AEGSPDDPDAPLPAGTLP-WPDTAAWTAAVRGSGMVADGVDGPADRPVRWVDGRVYLDRY 1295 Query: 113 WCNERTVARFFN-EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISG 171 W +E+ V R + + ++VD+ L + + FP + + Q+VAAA A R++V++G Sbjct: 1296 WRDEQVVRRDVDARLTSLLDVDDDALRRAVHARFPRAQDAR-QRVAAATAAVSRLTVLTG 1354 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP------L 225 GPGTGKTTTVA+L+A L +A G RI LAAPTGKAA RL E++ L +L Sbjct: 1355 GPGTGKTTTVARLVAVLRDVA-GPGLRIALAAPTGKAATRLQEAVNAELARLDDAAVGGT 1413 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 P AST+HRLLG +P S R H + L DV+V+DEASM+ LP+++R++DA Sbjct: 1414 VAAPGAARPLTASTIHRLLGWRPSSTRFAHDHAHRLPHDVVVLDEASMVSLPLLARVLDA 1473 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP-----AG 340 L AR++ +GD DQLASVE GAVLGD+ A + +L+ L VP A Sbjct: 1474 LRPDARLVLVGDPDQLASVEVGAVLGDLVARPTR--SGPLPARLAALLPDDVPGTATSAD 1531 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD---IEKRL 397 +AA+L + L ++RFG + + +LA A+ RGD A + + +E Sbjct: 1532 DTRDAAALHGGVVRLVVTHRFGHE--LAELADAVRRGDADATLALLRAGGAHASLVEPAA 1589 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNER 457 ED + L ++ G L + ++A ++LL A R GP GVA Sbjct: 1590 EVPTEDEVPGLRGDVSATGARLVAAARAGDTAGALEALGVHRLLLAHRRGPAGVARWAAL 1649 Query: 458 IEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDG 517 ++++ ++ + GRP+++ ND GL NGDIG+ + G G V Sbjct: 1650 AQRWV--EKTVGDLQPGPLSLGRPLLVTVNDRTTGLSNGDIGVLVSDGAGGVVAAFGESH 1707 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 + V+P RLP ET AMTVH++QGS+F ++LP +P++TREL+YTAVTRA+ + Sbjct: 1708 APRLVRPHRLPAVETVHAMTVHRAQGSQFTFVTVLLPPASSPLLTRELLYTAVTRAQEHV 1767 Query: 578 SLYADERILSAAIATRTERRSGL 600 + + A+ R SGL Sbjct: 1768 RVVGSAEAVRRAVERPVRRASGL 1790 >UniRef50_A1KCB0 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease n=4 Tax=Proteobacteria RepID=A1KCB0_AZOSB Length = 650 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 229/608 (37%), Positives = 322/608 (52%), Gaps = 50/608 (8%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE-------CLLASQAVSRG 94 L + GHVCLPL+ + A + W+E L S+ + G Sbjct: 45 LCLASAAGHVCLPLAAIAVEVAPEWGEDDAGWDEQSALPWDEGADPAAVAALRSRLLESG 104 Query: 95 DEPT------------PMILC-GDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLAQ 139 P++L DRLYL R++ E +A+ A V + + Sbjct: 105 AVVAAADLAAAAHEAHPLVLDADDRLYLRRLYDLEGRLAQALRTRAEAAPGAVADERVRA 164 Query: 140 TLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 L LFP + +WQ++A A+AL RR++VISGGPGTGKTTTVA + + Sbjct: 165 LLAPLFPAPAGEAPDWQRIAVALALGRRLTVISGGPGTGKTTTVAA--LLGALLGLQPQA 222 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 RI LAAPTGKAAAR+ E+L LP + +P +A T+HRLLG P R RHHA Sbjct: 223 RIALAAPTGKAAARMLEALRGRAASLPA--ALRAALPGEAHTVHRLLGVTPQPGRFRHHA 280 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 GNPL +DVLVVDEASM+DL + +RL+DALP AR++ LGD+DQLA+VEAGAV ++ A Sbjct: 281 GNPLPVDVLVVDEASMLDLALAARLLDALPPEARLVLLGDKDQLAAVEAGAVFAEV--SA 338 Query: 318 NAGFTAERARQLSRLTG------THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 A +L+ LTG A +L S+ L +S+RF +DSGIG+LA Sbjct: 339 ARALDAAEVARLAALTGCSAAAMADELGPPAGAAGALAGSVVWLTRSHRFAADSGIGRLA 398 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY--IAMLEEALAGYGRYLDLLQARAEPD 429 A IN G D R L GE A+ + GY YL L+ A Sbjct: 399 ADINGGRGETALAWLAAG-ADPSARWLDDGEARPGAALWQAMETGYAPYLAALRESAAQA 457 Query: 430 --------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK--RKIHRHPHSRWYEG 479 AF+ +++L A+ +GP G+ LN + ++++ + + R +RWY G Sbjct: 458 TPPARAVATAFAAFDRFRVLAAVHDGPRGLGALNAHLARWLRAQLAHPLDRGAGARWYPG 517 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 R V++ RND LGL+NGD+G+ L GT VWFA+ G +++ P RLP H+ +A+T+ Sbjct: 518 RAVIVLRNDYLLGLYNGDVGLCLPDADGTLAVWFALQGGGFRALPPQRLPAHDDAFALTI 577 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF+ ++LP+Q V++REL+YT VTRA +R+ + + +AA T R S Sbjct: 578 HKSQGSEFEEVLVVLPAQPVRVLSRELLYTGVTRAAQRVCVAGGAAVFAAACERPTRRHS 637 Query: 599 GLAALFSS 606 GLAA + Sbjct: 638 GLAARLGA 645 >UniRef50_D0L8X2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Corynebacterineae RepID=D0L8X2_GORB4 Length = 641 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 193/623 (30%), Positives = 286/623 (45%), Gaps = 43/623 (6%) Query: 6 QLLEAVEHKQLRPLDVQ----FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 L L DV L AL G CL L R+ + Sbjct: 24 ILARWNAAGVLAAADVHVTDRLTRMCGEPLSDLALLGTALAVRAVRLGSTCLALDRI-GD 82 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT-PMIL----CGDRLYLNRMWCNE 116 P V + E V G P P++L G LYL + + E Sbjct: 83 IPGLPDQPDLVLPAPA-ELLSELRRCPLVVGTGAGPLRPLMLMGSDDGPLLYLQKYFRQE 141 Query: 117 RTVARFFN-EVNHAIEVDEALLAQTLDKLF---PVSDEINWQKVAAAVALTRRISVISGG 172 T+ + +VD L +D +F S+ ++ Q++AAAV +R +V++GG Sbjct: 142 ETIRTVLAARAATSPQVDPDRLRSAIDTVFGDVTSSETVDLQRLAAAVVASRWTTVLAGG 201 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 PGTGKT TVA++LA L Q+ G R+ L APTG+AAA+L S+ Sbjct: 202 PGTGKTYTVARILAVL-QIVHGGSLRVGLCAPTGRAAAQLQASVSPGGSAGLDPTLITGA 260 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A T+H LLG PGS R G+ L DV+VVDE SM+ + MSR++DA ARV Sbjct: 261 GALHAVTVHSLLGWYPGSN-PRFGRGHTLPHDVIVVDETSMLSMTAMSRVLDAARPDARV 319 Query: 293 IFLGDRDQLASVEAGAVLGDICAYAN------AGFTAERARQLSRL----TGTHVPAGTG 342 IF+GD QLASV+AGAVL D+ + AG +A + L A Sbjct: 320 IFVGDPHQLASVDAGAVLADLVERTDTDPGPAAGESAHASIALQAAGIGPERVSAEAIGP 379 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 EAA + + L++ YRFG AA + + D +DIE Sbjct: 380 GEAARISRGVITLRREYRFGGGIA-AVAAAVNAGDATRVIDLLTDPDVSDIELIAP---- 434 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 D I + +GR L + ++A + +++LCA REG +GV G + R+ +++ Sbjct: 435 DNIDATRPDVTAWGRELRTAALACDAHAAVEALDSHRVLCAHREGYWGVRGWSRRVAEWL 494 Query: 463 QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGTRVWFAMPDG 517 H W+ G+P+++ ND FNGD G+ + RV F G Sbjct: 495 -----GHDADRPGWFAGQPILVTANDRQTRTFNGDTGVIIRDPHSGDPDDLRVAFRRG-G 548 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 ++ ++ ++L E T +AMT+H+SQGS+FD ++LP + ++TREL+YTA+TRAR + Sbjct: 549 EVRLLRRTQLAEISTVYAMTIHRSQGSQFDRVTVVLPPSGSELLTRELLYTAITRARTAV 608 Query: 578 SLYADERILSAAIATRTERRSGL 600 + A ++ AA+ R +R SGL Sbjct: 609 RVVAAPDVVRAAVERRVQRASGL 631 >UniRef50_C0ZAR4 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAR4_BREBN Length = 753 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 150/634 (23%), Positives = 245/634 (38%), Gaps = 111/634 (17%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAG--EGHVCLPLSRLENNE 62 + + + V R D+ A +A V AA + +A EGHV LP+ L E Sbjct: 198 RLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFMLQEASYSEGHVYLPVEEL--CE 255 Query: 63 ASHPLLATCVSEI---GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + LL C + ++Q E L S ++ +R+YL ++ E + Sbjct: 256 KTLRLLEECGGHVFSGDDIQLAVEALFVSSKIA---------WEDERVYLPSLFFAELGL 306 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISGGPG 174 A+ E ++ L V DE+ Q+ A A+ + +++GGPG Sbjct: 307 AKRLRHFASRDEFGTFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPG 366 Query: 175 TGKTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 TGKTT + + Q+ + I L APTG+AA R+TE+ G Sbjct: 367 TGKTTVIRGICRVFSQLHGLSLDLKKYNEENPFPIVLVAPTGRAAKRMTETTG------- 419 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 A T+HRLLG + S H A +P+ +L+VDE SM+D+ + ++L Sbjct: 420 ----------LPAMTIHRLLGYKGES--FEHDAEHPIRGRLLIVDEMSMVDIWLANQLFR 467 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 A+PD ++I +GD DQL SV G VL D+ Sbjct: 468 AVPDDMQIIMVGDPDQLPSVGPGNVLLDMIRSGLLP------------------------ 503 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 L L + YR +S I +LA + +G+ A D + E Sbjct: 504 -------LVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTSLPQEVPEAV 556 Query: 405 IAM-LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 + GY + Q+L + +G GV LNE +++ Sbjct: 557 KQICFGAVKKGY------------------TAKDVQVLAPIYKGNAGVNRLNEELQELFN 598 Query: 464 QK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL------DRGQGTRVWFAM 514 K ++ + + G V+ N++ +FNGD+G + + + + A Sbjct: 599 PKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIVAIFFPNENAENQEMLVAA 658 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 D + S + + +VHKSQGSEF + ++ R+LVYT +TR++ Sbjct: 659 FDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSK 718 Query: 575 RRLSLYADERILSAAIATRTE--RRSGLAALFSS 606 L + + AA+ + E R S L Sbjct: 719 SFLIMCGEPDAFRAAVESDEEGVRYSYLEERLKQ 752 >UniRef50_UPI0001C37B34 RecD/TraA family helicase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37B34 Length = 732 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 147/622 (23%), Positives = 252/622 (40%), Gaps = 111/622 (17%) Query: 19 LDVQF------ALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLA 69 +D++F A + ++ + A L L + GH CLPL L + ++ Sbjct: 190 IDLEFKKADTIAHDLHIPKNSDKRVIAGLQYILRANTTLGHSCLPLDVLLTKAENALGIS 249 Query: 70 TCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR--LYLNRMWCNERTVA---RFFN 124 E+ +S + D+ + +R +YL + E +A + Sbjct: 250 ------------EKDFYSSYNAALDDDELFEYIKNEREYVYLPDYYYAESFIADRIKVLK 297 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 + + D L + + E Q+ A A++R + +++GGP T Sbjct: 298 DFTSPEDFDFDALIDIEQEEHGIEYE-ELQRRAITSAVSRGLMILTGGP----GTGKTTT 352 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 L A+I + + R+ L APTG+AA R+++ G +A T+HRLL Sbjct: 353 LNAIISIFEKRGLRVLLTAPTGRAAKRMSDLTG-----------------YEAKTIHRLL 395 Query: 245 GA---QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 + G H+ NPL DV+V+DE SM+D+ + +L+ AL ++I +GD DQL Sbjct: 396 EVVYDKGGRLTFAHNENNPLDCDVIVIDEMSMVDVLLFEKLLRALRLGCKLIMVGDSDQL 455 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV AG +LGD+ A ++ LQ+ +R Sbjct: 456 PSVGAGNLLGDLIASQ-------------------------------AVTVIKLQEIFRQ 484 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 S I A I G+ + DF ++ ++ + + +DL Sbjct: 485 ARKSCIVTNAHKIVSGELPDLSRK-DSDFFFFKRNSPEAVCELL-------------VDL 530 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYE 478 + R ++ Q++ R+G G +N+ +++ + K+ + + Sbjct: 531 ARTRLPKAYNYSPVDDIQIIAPSRKGTLGTVEMNKLLQEKINPHDDKKPEVKGKLFTFRL 590 Query: 479 GRPVMIARNDSA----------LGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLP 528 G VM RN+ G+FNGDIG ++ TR DG + + L Sbjct: 591 GDKVMQTRNNYDIIWKKDEEQGTGVFNGDIGKIININMMTRNVIIDFDGRLTAYPFDTLD 650 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSA 588 + E +A+TVHKSQG EF+ + L + R L+YTAVTRAR+ L + E +S Sbjct: 651 QIELAYAVTVHKSQGCEFEAVIMPLLGSFEKLCYRNLLYTAVTRARKLLIIIGSEEDISR 710 Query: 589 AI--ATRTERRSGLAALFSSRE 608 + RT R + L + S+ + Sbjct: 711 MVENNRRTRRYTCLKKMLSTDQ 732 >UniRef50_B2A8J3 Helicase, RecD/TraA family n=2 Tax=Clostridia RepID=B2A8J3_NATTJ Length = 726 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 131/601 (21%), Positives = 230/601 (38%), Gaps = 92/601 (15%) Query: 24 ALTVAGDEHPAVTLAAA---LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 A + AA LL + +G+ L L + ++ + E Sbjct: 201 AREMGVSVDSEERAKAAVVYLLEEKSQDGNTFLKREELIEALKELEVENVNLNSVLEELV 260 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDE-ALLAQ 139 E+ ++ G+ +Y + E+ +A + ++ + + + Sbjct: 261 EEKEIVVENIPE----------AGELIYPAPFFFAEQGIASRLKRLKDGVDRELFPRIQK 310 Query: 140 TLDKLFPVSDEI---NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER 196 +K + Q + V++GGP T ++ L+ + Sbjct: 311 IAEKYLEEQANLVLSPEQHQVIKQVPETGLMVVTGGP----GTGKTTVIKCLMDIFQKAG 366 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA---QPGSQRL 253 ++ LAAPTG+AA R++E+ G ++A T+HRLL + + Sbjct: 367 QKVMLAAPTGRAAKRMSEATG-----------------DEAKTIHRLLEFTYDKEEGMKF 409 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + + PL D+L+VDEASMID +M+ L+ A+ R++ +GD DQL SV AG VL DI Sbjct: 410 QRNQDRPLKGDLLIVDEASMIDTILMNNLLKAISPGTRLVLVGDTDQLPSVGAGNVLQDI 469 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 R L L++ +R +S + A Sbjct: 470 IESG-------------------------------RIPLVRLKRVFRQARESMVVVNAHR 498 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 IN G + +DF + + + ED + + + L R Sbjct: 499 INEGKFPILNAK-GKDFYFLPR---EEPEDVVKTI----------ISLCAKRLPNYNGYH 544 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSA 490 N+ Q+L +R GV LN+ +++ + + + + G VM +ND Sbjct: 545 PVNDIQVLSPMRRTVTGVENLNQSLQKVLNPPQKNKAEINFGGACYRTGDKVMQVKNDYE 604 Query: 491 LGLFNGDIGIALDRGQGTRVW-FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 +FNGD GI V G + + L + ++VHKSQGSE+ Sbjct: 605 KNVFNGDTGIVTKVDAEENVVNVRYGHGEEIAYEGRELDALVHAYCISVHKSQGSEYPVV 664 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSSR 607 L + +Q ++ R L+YTAVTRA+ + L ++ + AI+ + ER + L + Sbjct: 665 VLPVTTQHYIMLQRNLLYTAVTRAKSLVVLVGTKKSIGIAISNKKTDERNTFLQHRIAVY 724 Query: 608 E 608 E Sbjct: 725 E 725 >UniRef50_Q8K9A8 Exodeoxyribonuclease V alpha chain n=4 Tax=Buchnera aphidicola RepID=EX5A_BUCAP Length = 602 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 162/610 (26%), Positives = 304/610 (49%), Gaps = 31/610 (5%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 M + L K + +D F+ ++ ++ + L +A +S ++ GH+ LP+ E Sbjct: 1 MNMSHLLQNFANKKIITLVDFYFSQFISK-KNSIIMLISACVSFESKNGHIFLPIEYFEK 59 Query: 61 NEASHPLLATCVSEIGELQN-----WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 N +++I + N W L + G TP++ D++YL ++W Sbjct: 60 NCFFSISNKQFINKILKCLNKKKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKA 119 Query: 116 ERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 E+ + E N +D L+ LF + + QK+A + L I I+ Sbjct: 120 EKKILERLYEKNQFDTIDTQQCLNILNNLFS-KKKHDLQKIAVILTLINNIIFIT----- 173 Query: 176 GKTTTVAKLLAALIQMADGERCRI--------RLAAPTGKAAARLTESLG-KALRQLPLT 226 I + +L+APTGKA L E L K L + L Sbjct: 174 ----GGPGTGKTTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLK 229 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 +E+K+ T+H+LLG S+++ + N L +D+L++DEASMID+ MMS ++ AL Sbjct: 230 EEKKQFSFNPIMTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSAL 289 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 ++IF+GD +QL V++ ++L IC+YA G++ + L +T + + Sbjct: 290 SKKTKIIFIGDHNQLKPVKSSSILKYICSYAEDGYSLKTQSILQEITQNSIINYKINKKN 349 Query: 347 S--LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 + + D +C+L+KSYRF +GI L+ A+ + + +F+ ++ + S +Y Sbjct: 350 TSYISDKICVLKKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFFYEINSEIEY 409 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 M+ + + + + II+ F +Q+LC ++ G FGV +N+ +E+ M + Sbjct: 410 KKMINIIINNNKIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYK 469 Query: 465 KRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTRVWFAMPDGNIK 520 + ++ + WY G+P++I N+ LG+FNG+IGI L + +V F D I+ Sbjct: 470 RNIFNKRFYINNKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIE 529 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 ++ L ++T+W++TVHK+QGSEF++ +LILP++ ++ ++++YT +TR R++L+++ Sbjct: 530 NIPIEILKNYKTSWSITVHKAQGSEFNNISLILPNKNLKILKKDILYTGITRTRKQLNIF 589 Query: 581 ADERILSAAI 590 + + I + Sbjct: 590 STKEIFIKTV 599 >UniRef50_Q2LTP5 Exodeoxyribonuclease V alpha chain n=22 Tax=Bacteria RepID=Q2LTP5_SYNAS Length = 753 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 137/586 (23%), Positives = 230/586 (39%), Gaps = 79/586 (13%) Query: 28 AGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLL 86 A D H + H+ E GHV P L + E Sbjct: 231 ARDSHLRAEAGILYVLHELSEEGHVTYPAGPLIRKCEETLEIDRKFIAAA----LEGIAG 286 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAI----EVDEALLAQTLD 142 Q V P L + L + +E A + + E++ + Sbjct: 287 ERQIVIEDGASFPEALPDRTVSLAKYHLSETQTAARLRILLNTPSALREIETEKAIAWVQ 346 Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 + ++ N Q A A++ ++ VI+GGPG T ++ A+I++ +I LA Sbjct: 347 EKLSLTLAHN-QIEAIRAAVSNKLLVITGGPG----TGKTTIINAIIRIFSASGTKILLA 401 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH 262 APTG+AA R++E+ G +A T+HRLL P + +PL Sbjct: 402 APTGRAAKRMSEATGM-----------------EAKTIHRLLEYSPQKGGFQKDDTSPLD 444 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 ++L+VDEASMID+ +M L+ A+P + I +GD DQL SV AG VL D+ Sbjct: 445 CEMLIVDEASMIDIILMHHLVKAIPLPSSFIMIGDGDQLPSVGAGRVLNDVIESG----- 499 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 + L++ +R +S I A INRG + Sbjct: 500 --------------------------CLPVVELREIFRQARESSIINNAHEINRGKFPRL 533 Query: 383 KTVFQ--QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 + DF +E+ + D I + L++ R + + Q+ Sbjct: 534 QPPGDRLDDFYFVEQEDPEKVVDLI-------------IRLVRERIPQRFGLDPMEDIQV 580 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L + G G LN ++ + + + + G VM RN+ ++NGDIG Sbjct: 581 LTPMHRGLAGAGNLNSVLQATLNPGKDGLQRGGRFYLVGDKVMQIRNNYDRDVYNGDIGR 640 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 + + DG + L E ++A++VHKSQG+E+ + L Q + Sbjct: 641 IVRLDHELQEATLNFDGREVVYEYGDLEEIVLSYAVSVHKSQGAEYPAVIMPLLMQHYML 700 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALF 604 + R L+YTAVTR ++ + + ++ L+ A+ +R + L+ Sbjct: 701 LQRNLLYTAVTRGKKLVVIIGSKKALAIAVRNNKTHKRFTLLSQRL 746 >UniRef50_A5CCM9 Helicase RecD/TraA, ATP-dependent exoDNAse (Exonuclease V) n=2 Tax=Orientia tsutsugamushi RepID=A5CCM9_ORITB Length = 731 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 146/614 (23%), Positives = 238/614 (38%), Gaps = 91/614 (14%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNE 62 QL+ ++ + D A + E+ + A L L G G +P +L N Sbjct: 196 QLVSDIKGIGFKSAD-NIAKAIGIPENSMMRARAGLNYALVTAMGNGSCGMPTDKLIN-- 252 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 H LL VS I + ++ E + AV + + ++L + E +A Sbjct: 253 LCHELLNIDVSIIIDALSF-EINERNVAVENINGE-------ECIFLKGLAYAELKIAEL 304 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTT 180 ++ + + + + ++ Q+ A AL ++ +I+GGPG GKTT Sbjct: 305 LVHISKGKLAWNPISSNKITEYISNANIKLSPSQQDALNQALKSKVMIITGGPGVGKTTL 364 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 + ++ L E I LAAPTG+AA RL+E+ A T+ Sbjct: 365 INSIINILKS----EGVVILLAAPTGRAAKRLSEAT-----------------QHPAHTI 403 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRL+ ++PG L +L++DE SM+D+ M I ALP A + +GD DQ Sbjct: 404 HRLVYSRPGQDVRT---ITKLKCQLLILDEMSMVDVTTMYAAISALPSTAALFLVGDIDQ 460 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV G V D+ + L + +R Sbjct: 461 LPSVGPGQVFSDLIKSQKFP-------------------------------IVTLTEIFR 489 Query: 361 FGSDSGIGQLAAAINRGDKTAVKT--VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 + S I A IN G +++ DF I + D I Sbjct: 490 QNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKIT------------ 537 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHP---HSR 475 +L+Q R I F + Q+L + G G LN +++ + + + Sbjct: 538 -ELVQVRLPKKFSISPFTDIQILSPITRGIVGTKNLNSVLQKVLLPSNSANDELLIWGNI 596 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 + G VM N+ ++NGDIGI + DGN S + E +A Sbjct: 597 FKIGDKVMQVVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNKISYDFDEIDEIVLAYA 656 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE 595 +T+HKSQG E+ + L Q P++ R+L+YTA+TRA++ + + ++ L+ AI Sbjct: 657 ITIHKSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIKKNIA 716 Query: 596 --RRSGLAALFSSR 607 R S L Sbjct: 717 ELRYSMLKKKLMDI 730 >UniRef50_C0AD34 Exodeoxyribonuclease V n=2 Tax=Verrucomicrobia RepID=C0AD34_9BACT Length = 759 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 146/560 (26%), Positives = 224/560 (40%), Gaps = 77/560 (13%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 EGH L + L + A A E+ L D+P P + Sbjct: 252 EGHTALREADLIDYAAPLLETAAERLAARIDALVEQRDLIRHWPPDVDKPLP---GSALI 308 Query: 108 YLNRMWCNERTVARFFNEVNH------AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVA 161 L + E+ +A + I+ + AL F +D+ Q+ A A Sbjct: 309 QLPVLDRAEQKIAASIVRLTKTGSALPPIKTEAALDWAQQKAGFQFADQ---QRAALRAA 365 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 L + S+++GGPGTGKT L AL+ + ++ RI LAAPTG+AA RLTE+ G Sbjct: 366 LVSKASILTGGPGTGKT----ASLRALVDILKAKKVRIHLAAPTGRAAQRLTETTGGY-- 419 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 A+T+HRLL H+ PL D LVVDEASM+D + + Sbjct: 420 ---------------ATTIHRLLKYDAAKGGFVHNEHQPLATDFLVVDEASMLDTRLAAA 464 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L+ A+P A ++ +GD DQL SV AG VL DI A + Sbjct: 465 LLQAIPSRAHLLLVGDIDQLPSVGAGNVLKDIIATQHVP--------------------- 503 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ----QDFTDIEKRL 397 + L +R S I A AIN GD + TV Q + D+ Sbjct: 504 ----------VTRLNVIHRQQGQSQIVTTAHAINAGDPSLPPTVGDISAIQVWGDLVFLA 553 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNER 457 S ED + + + + +A P + Q+L + +G GV N + Sbjct: 554 ADSAEDCVRKVIQLCTEFVP-----RALKWP----HPVKDVQVLAPMHKGAAGVGNFNTQ 604 Query: 458 IEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDG 517 ++ + + R P + G ++ RN+ LFNGDIG + A DG Sbjct: 605 LQAALNPRAPGLRTPSGEFRVGDKIIQLRNNYDKNLFNGDIGTITAVDAEEGAFDATFDG 664 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 + A+++HKSQGSE+ + L ++ R L+YTA+TR ++++ Sbjct: 665 ETHVFARGDAGDLALAHAISIHKSQGSEYPVVIVPLMKAHFMMLQRNLLYTAITRGKKKV 724 Query: 578 SLYADERILSAAIATRTERR 597 + + + A+ R Sbjct: 725 YIVGEPAAYAMAVRNNEARA 744 >UniRef50_UPI0001C3224F exodeoxyribonuclease V, alpha subunit n=2 Tax=Actinobacteria (class) RepID=UPI0001C3224F Length = 616 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 215/624 (34%), Positives = 305/624 (48%), Gaps = 57/624 (9%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDA---GEGHVCLPLSRLENN 61 L + L DVQ A +A A + A GHV + L+ + Sbjct: 20 ALLRAFNDAGVLSIADVQVARRLAALGDVADAELLLAFALAARAPRLGHVLVDLATIRAT 79 Query: 62 EASHPLLATCVSEIGELQN--WEECLLASQAVSRGDEP----TPMILCGDRLYLNRMWCN 115 A + + + W L V GDE TP+ L G LYL+R W Sbjct: 80 VAVDTEERIDLDALPWPETGAWVAALAGCALVGVGDEDGADTTPLRLVGTALYLDRYWRE 139 Query: 116 ERTVARFFNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 ER VA A+ VDEA L L +L P + Q+ A A A RR + ++GGP Sbjct: 140 ERQVAADLRGRLEALPAGVDEAALTARLKRLAP---DDARQRNAIAAAAVRRFATVAGGP 196 Query: 174 GTGKTTTVAKLLAALIQMADGER---CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 GTGKTTTVA++ A +++ A E I LAAPTGKAAARL E + QL T + + Sbjct: 197 GTGKTTTVAQIAALVVEQARAEGRPVPLIALAAPTGKAAARLEEQVHHRAAQLDTTPDVR 256 Query: 231 KRIPE-DASTLHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 +++ ASTLHRLLG +PGS R RH L D+++VDEASM+ L +M+RL++A+ Sbjct: 257 EQLAGLRASTLHRLLGWRPGSHSRFRHDRHARLPHDMVIVDEASMVSLTLMARLLEAVRP 316 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 AR++ +GD DQLAS+EAGAVLGDI A G Sbjct: 317 DARLVLVGDPDQLASIEAGAVLGDIVRAARPG---------------------------- 348 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE------ 402 + L++ YRFG+ GIG ++AA+ GD A+ ++ + +G+ Sbjct: 349 -AGIVQLERVYRFGA--GIGAVSAAVRAGDADALVAALVSAPAEVTWIPIDAGDPATATA 405 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 +A + +A GR + + + A ++LLCA R GP GV +E ++ Sbjct: 406 AVLAPVRDAATRAGREVIAAALGGDGRAALDALGAFRLLCAHRRGPHGVTTWMPLVEGWL 465 Query: 463 QQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSV 522 +R Y GRP++I ND L LFNGD G+ + G G I +V Sbjct: 466 A-GDIAATGTWARDYPGRPLLITANDYDLDLFNGDTGVVVASPSGGLTAAFERRGEIVAV 524 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 +P+RL +T AMT+HKSQGS+F AA+++P+ + ++TREL+YTAVTRARR L + Sbjct: 525 RPARLRAVDTVHAMTIHKSQGSQFGTAAVVVPAADSRILTRELLYTAVTRARRHLIVIGT 584 Query: 583 ERILSAAIATRTERRSGLAALFSS 606 E L AA+ R SGL+ + Sbjct: 585 EDALRAAVHRPAARASGLSGRLGA 608 >UniRef50_A6GES1 Exodeoxyribonuclease V n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GES1_9DELT Length = 813 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 156/623 (25%), Positives = 241/623 (38%), Gaps = 85/623 (13%) Query: 7 LLEAVEHKQLRPLDV-QFALTVAGDEHPAVTLAAALLSHDA-GEGHVCLPLSRLENNEAS 64 L V+ + D AL V D V A +GH LP L + S Sbjct: 207 LAREVKGIGFQTADRIARALGVDLDSDERVDAGIVHALEKAKNDGHCALPPGSLLDQARS 266 Query: 65 HPLLATCVSEIG-----ELQNWEECLLASQAVSRG----DEPTPMILCGDRLYLNRMWCN 115 L E G + + L G P P + +L R Sbjct: 267 ILSLPEARIEAGIDRLIDAGDLIPRLRPESGFHSGEKGSGGPKPAGGPDELYFLERFDEA 326 Query: 116 ERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 E + + + + D L Q+ A +++++GGPGT Sbjct: 327 ETN-LVAALLALASAPSEAWPVGELPDHL------SEGQRRAVEAVARCGVTILTGGPGT 379 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GK+T VA +L +A I LAAPTG+AA RL ++ G+A Sbjct: 380 GKSTVVANVLN----VAKAALVPIMLAAPTGRAAKRLEQTTGEA---------------- 419 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A T+HRLL Q + +H A +PL ++V+DE+SM+DL + LI +L R++ + Sbjct: 420 -ARTVHRLLEVQGETGEFKHCANDPLPPGLVVIDESSMLDLELAEALITSLTADNRLLLV 478 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL SV G VL D+ A G L + L Sbjct: 479 GDADQLPSVGPGNVLRDLIRAAET---------------------LGERGGELEVPVVRL 517 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 + +R S I A + G A + ++GE ++ +A + Sbjct: 518 DRIFRQQEGSTIVLNAHHVLSGRPLAPDGADRG----------KAGEFFVLRAPDAERTH 567 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 + +++ R + E Q+LC + +G G N ++ R+ P + Sbjct: 568 AKIVEMAAERIPAAFGLDRITEVQVLCPMHKGRAGTEAFNRALQARYTGDRECLEAPGAG 627 Query: 476 ---------WYEGRPVMIARNDSALGLFNGDIGIALDRGQ----GTRVWFAMPDGNIKSV 522 + G VM RND G+FNGDIG+ L Q G +G++ + Sbjct: 628 RGKGGDGRVFRLGDRVMQIRNDYDRGVFNGDIGVVLRMDQSAANGAGTMTVDFEGSLSTY 687 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 + L +A+++HKSQGSEF + + ++ ++ R L+YTA+TRARR L D Sbjct: 688 ERKDLGSLRLAYAISIHKSQGSEFPAVLIPMLTEHHVMLRRNLLYTAMTRARRLCVLVGD 747 Query: 583 ERILSAAIAT--RTERRSGLAAL 603 R + AI R +GLA Sbjct: 748 PRAIERAIRRADAAHRWTGLAER 770 >UniRef50_A1HT63 Helicase, RecD/TraA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT63_9FIRM Length = 719 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 163/608 (26%), Positives = 244/608 (40%), Gaps = 92/608 (15%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEAS 64 L V+ R D + AL +A + +T + GH C+P L A Sbjct: 183 LALEVDGIGFRTADHIAMALGIATNHPGRLTAGIHFALLQTAQAGHCCVPEELLVQETAK 242 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + + + + L ++ +I Y ++ E+ VA Sbjct: 243 LLQVDQYEAAM----TLDRLLKENRLCVEDYHGLRLI------YPEYLYYAEKRVAERLL 292 Query: 125 EV---NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 + + + A + + QK A AL + V++GGPGTGKTTTV Sbjct: 293 RLKAKAKPVRTADYAAAAAAWEQGAGLELAAAQKEALVSALAYGVLVLTGGPGTGKTTTV 352 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 +LA L + +I LAAPTG+AA RL+E+ G+ +A T+H Sbjct: 353 RGILAVL----EDAGLKIVLAAPTGRAAKRLSETTGR-----------------EAQTVH 391 Query: 242 RLLGAQPGSQ---RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 RLL A G + NPL DV++VDE SM+D+ +M+ L+ A+PD R++ +GD Sbjct: 392 RLLEAGGGEDGAPYFARNEDNPLDADVVIVDEVSMMDIVLMNHLLRAIPDGCRLVLVGDV 451 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL +V G+VL D+ R + L + Sbjct: 452 DQLPAVGPGSVLKDVIRCG-------------------------------RLPVVRLTEV 480 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R +S I A INRG + F +I E + + E L Sbjct: 481 FRQAGESIIVHNAHRINRGLVPDCRKDANFQFREIAGDE-AVAEAIVRLCREEL------ 533 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSR 475 P + Q+L + GV LN ++ + + + + Sbjct: 534 ---------PAAGYDVLRDVQVLSPMHRLVCGVENLNRLLQGALNPPDPAKGWIQAVNQT 584 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 EG VM RN+ G+FNGDIG G V PDG + L E + +A Sbjct: 585 LREGDKVMQIRNNYTKGVFNGDIGFIAAIDDGV-VIVRYPDG-PVMYERGELDELQLAYA 642 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-RT 594 M+VHKSQGSE+ L L ++ R L+YTAVTRA+ R+ L + L+ A+A RT Sbjct: 643 MSVHKSQGSEYPVVILPLVPGHRIMLQRNLLYTAVTRAKERVILLGSKAALNTALANDRT 702 Query: 595 ERRSGLAA 602 RR L A Sbjct: 703 RRRYSLLA 710 >UniRef50_O34481 Uncharacterized protein yrrC n=119 Tax=Bacillales RepID=YRRC_BACSU Length = 798 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 148/630 (23%), Positives = 245/630 (38%), Gaps = 102/630 (16%) Query: 6 QLLEAVEHKQLRPLDVQFALT-VAGDEHPAVTLAAALLSHD--AGEGHVCLPLSRLENNE 62 QL++ VE D + ++G+ V A EGH + +L + Sbjct: 199 QLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIETEQLIIDT 258 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 S + + + A+ A+ E +++ R Y ++ E+ VA+ Sbjct: 259 QSLLNQSAREGQRIT------EMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKR 312 Query: 123 FNEVNHAIEVDEA-LLAQTLDKLFPVSDEIN-----WQKVAAAVALTRRISVISGGPGTG 176 + E + ++ L L + + ++ QK A AL+ + +++GGPGTG Sbjct: 313 VKHIASQTEYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGGPGTG 372 Query: 177 KTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 KTT + ++ ++ E I LAAPTG+AA R++ES G Sbjct: 373 KTTVIRGIVELYGELHGVSLDPSAYKKDEAFPIVLAAPTGRAAKRMSESTG--------- 423 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 A T+HRLLG G++ H P+ +L++DEASM+D+ + + L A+ Sbjct: 424 --------LPAVTIHRLLGWN-GAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAI 474 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 PDH ++I +GD DQL SV G VL D+ L +P Sbjct: 475 PDHIQIIIVGDEDQLPSVGPGQVLRDL------------------LASQVIPT------- 509 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L YR S I +LA + G T +D + I Q E Sbjct: 510 ------VRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEVVEK 563 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-- 464 ++ AL + Q+L + G G+ LN ++ + Sbjct: 564 VVANALKK-----------------GYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPK 606 Query: 465 -KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG------IALDRGQGTRVWFAMPDG 517 KR+ + + G ++ N +FNGDIG A + + + DG Sbjct: 607 EKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYAKENTEKEDMAVVSFDG 666 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 N + + + ++HKSQGSEF L + ++ R L+YTA+TRA++ L Sbjct: 667 NEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKFL 726 Query: 578 SLYADERILSAAIATR--TERRSGLAALFS 605 L +E L + T R++ L S Sbjct: 727 ILCGEEEALEWGVKNNDATVRQTSLKNRLS 756 >UniRef50_C6BXI3 Helicase, RecD/TraA family n=5 Tax=Desulfovibrionales RepID=C6BXI3_DESAD Length = 730 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 150/600 (25%), Positives = 241/600 (40%), Gaps = 89/600 (14%) Query: 22 QFALTVAGDEHPAVTLAAALLSHDAGE--GHVCLPLSRLENNEASHPLLATCVSEIGELQ 79 L A D + A E GH+ P +L + A +L+ Sbjct: 200 ALKLGFAPDSAQRIEAAIIYSLFSVSERGGHMFSPKVKLVEDVAKML-------GGVDLE 252 Query: 80 NWEECLLASQAVSR-GDEPTPMILCGDRLYLNRMWCNERTVARFFNE-VNHAIEVDEALL 137 E + + + R E P + ++L + ER + + + ++H V + Sbjct: 253 LISEGIHSLEERKRVRVENLPEQDIDEAVFLMHFYRFEREICKRLHGLISHPSPVSREKV 312 Query: 138 AQTLDKL-----FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 + L ++ F +SDE Q+ A A + +I+GGPGTGKTT ++ L ++ Sbjct: 313 EKALPEVESELGFELSDE---QREAVFEACVNKFFIITGGPGTGKTTITRAVVMTLKEL- 368 Query: 193 DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 +I+LAAPTG+AA RL+E+ G+ AST+HR+L P Sbjct: 369 ---GLKIKLAAPTGRAAKRLSEATGR-----------------QASTIHRMLQFTPEDGG 408 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 ++ L DVLVVDEASM+D + ++ A+P RVIF+GD +QL SV G VL D Sbjct: 409 FYYNEDQKLKADVLVVDEASMLDAQLCLAVLRAVPLTCRVIFVGDVNQLPSVGPGNVLSD 468 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 + +L +R +S I A Sbjct: 469 LLQSGQV-------------------------------QSAVLNHIFRQAQESYIVVNAH 497 Query: 373 AINRGDKTAVKTVF--QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL 430 IN G+ + DF I + Q +D I + + R Sbjct: 498 RINDGEFPMPHPADAPEADFYWIPQESTQKVQDMI-------------VQTVCERIPERY 544 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYEGRPVMIARNDS 489 + + Q+L + +G G LN +++ + K + + G V+ RN+ Sbjct: 545 GLDPMTDVQVLTPMHKGDVGTQKLNAVLQEKLNPGNGKGLKRGFVEYRVGDRVLQLRNNY 604 Query: 490 ALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 +FNGD+G + A DGNI + S L E +A++VHKSQGSE+ Sbjct: 605 EKEVFNGDLGRVMYINTEENELTAEFDGNIVHYELSELDELTLAYAVSVHKSQGSEYPAV 664 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSSR 607 + + SQ ++ R L+YT +TRAR+ L +R + + T +R + L Sbjct: 665 VMPIVSQHYMLLQRNLLYTGLTRARKLAVLIGSKRAFTIGLNNVTAGKRFTNLRHRIKQI 724 >UniRef50_A3ETY4 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY4_9BACT Length = 575 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 167/579 (28%), Positives = 265/579 (45%), Gaps = 57/579 (9%) Query: 28 AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLA 87 + +E V L A+LS +GHV + L +++ HP + + + + + WE L A Sbjct: 41 SEEETLLVLLMVAILSRARRDGHVLIDLDEVQH----HPWVLSWKNRLPDPSRWEAILDA 96 Query: 88 SQAV-SRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP 146 V G+ P+P + LY + ++ E +AR E + Q + +L Sbjct: 97 HPLVTGPGEGPSPFLYANRCLYFSALYRQESFLARSIRERLSLGAREPDARDQEILRL-- 154 Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 S + ++ AL R +++GGPGTGKT T A++L + + A PTG Sbjct: 155 ASGGVEDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKILRPEAHLVV--ATPTG 212 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVL 266 KAA R E+L D TLHRLLG PG PL D++ Sbjct: 213 KAARRFREALS--------------LPEVDVLTLHRLLGISPGGASP--GEDRPLVQDLV 256 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 +VDE SM+DL +M+RL AL VI +GD DQL+SV G+V GD+ + Sbjct: 257 LVDECSMVDLSLMARLFRALSPETSVILVGDPDQLSSVGPGSVFGDL--ALAMSVEQKTR 314 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 ++SR S +L ++YR S G+LA + +GD V + Sbjct: 315 PEISR-------------------SFQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEIL 355 Query: 387 QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE 446 R ++ I + + L +L ++++R+ + + ++ LL A+RE Sbjct: 356 ASGEKSGPIRWIEPRTGAIREIGKTL--IEAWLPVVESRS-AEEAWEKLGQFALLGAVRE 412 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRG 505 GP G +N + + + R PV++ N G NGD G+ ++ Sbjct: 413 GPLGTRTVNRLLRNHFENRSGCTRRFV-------PVIVTENSVESGFMNGDPGLLEMEGN 465 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 R +F P ++ P +P E +A+TVHKSQGSEFDH ++L S+ +++R L Sbjct: 466 TAIRAFFQGPGQTMRVASPLLMPAWEEAFALTVHKSQGSEFDHVTVLLGSESNALLSRSL 525 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +YTAVTRAR+RL++YA +L A++ R +GL Sbjct: 526 LYTAVTRARKRLTVYASRGVLREALSNAGGRSTGLFQAL 564 >UniRef50_A8SM75 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SM75_9FIRM Length = 739 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 135/589 (22%), Positives = 229/589 (38%), Gaps = 100/589 (16%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 L GHV P +L N + + T + E + LL+S+ V Sbjct: 217 LTQKAINFGHVYYPKEKLTNEVSKLIGVETELIEPVYM----NLLLSSEVVIDNS----- 267 Query: 101 ILCGDRLYLNRMWCNERTVARFF--NEVNHAIEVDEALLAQTLDKLFPVSDEINW-QKVA 157 +YL+ ++ +E +A +N ++ + + + + +S +++ Q A Sbjct: 268 -FEESNIYLDYLYVSESYIASKLAKMALNDDFKILFDIEKEIKEAIKSLSIKLSKIQIDA 326 Query: 158 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 IS+I+GGP T ++ + ++ I L APTG+AA R+ E+ G Sbjct: 327 IKSCFEENISIITGGP----GTGKTTIINTISKIYLDNGYNISLCAPTGRAAKRIEETTG 382 Query: 218 KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGS----QRLRHHAGNPLHLDVLVVDEASM 273 +A T+HR+LG P S ++ NPL DV+++DE SM Sbjct: 383 I-----------------EAKTIHRMLGYIPSSYDDIGHFEYNEDNPLDTDVIIIDEMSM 425 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D+ + +L+ + D+ R++ +GD DQL SV AG VL D+ +T Sbjct: 426 VDVVLFEKLLRGMKDNTRLVIVGDVDQLPSVGAGNVLRDLINSKKIKYTK---------- 475 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 L +R S I A IN G + + DF + Sbjct: 476 ---------------------LVDIFRQSESSNIIVNAHKINNGQEPILNEKN-SDFFFL 513 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 + + + +DL+ R + Q+L R+G GV Sbjct: 514 KTETPAITRNVV-------------VDLISKRLPNAYGYDFSKDIQILTQSRKGICGVFE 560 Query: 454 LNERIEQFMQQKRKIHRH---PHSRWYEGRPVMIARNDSAL-----------GLFNGDIG 499 LN ++ + K + + + VM +N+ L G++NGD+G Sbjct: 561 LNRLLQDILNPKTETTDELLVGNKLFRVNDKVMQTKNNYNLSFFDSDGEENFGVYNGDMG 620 Query: 500 -IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 I ++ M D + L E +A+T+HKSQGSEF + + Sbjct: 621 HIIFIDKSSKKLTVEMDDKRVIDYTLEDLDNLELAYAITIHKSQGSEFKSVIIPMFDGYR 680 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFS 605 + TR L+YTA+TRA+ + L D+ +++ I T R S L Sbjct: 681 LLQTRNLLYTAITRAKENIILVGDKNVMNNMIRNNTINSRYSNLENRIK 729 >UniRef50_C5SD04 Helicase, RecD/TraA family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD04_CHRVI Length = 694 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 151/609 (24%), Positives = 225/609 (36%), Gaps = 129/609 (21%) Query: 18 PLDVQ---------FALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASH 65 LD+ A + + A + L AG GH L + Sbjct: 190 ALDIHGIGFKTADSLAERLGIPRDSLMRAQAGVRHALQEIAGNGHCAAWRETLIEQATAL 249 Query: 66 -PLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + A + + + + E L+A +R L+L + E VAR Sbjct: 250 LEIPAPLIEQAIDAELDAERLIAESITARAA-----------LFLTPLQRAELGVARHVA 298 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDE------INWQKVAAAVALTRRISVISGGPGTGKT 178 + D D+ +P +E + Q+ A A L ++++++GGPG GKT Sbjct: 299 RLQ---PGDPPWGRIQTDRAWPWVEERTGLQLSDSQRAAIARVLAAKVAILTGGPGVGKT 355 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T V LL L + R+RL APTG+AA RL+ES G+ +A Sbjct: 356 TVVNSLLLLLQ----AKHTRVRLCAPTGRAAKRLSESTGR-----------------EAR 394 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLL P + +H A NPL LD+LVVDE SM+D+ +M++L+ A+PDHA V+ +GD Sbjct: 395 TIHRLLEFDPETFGFKHTADNPLDLDLLVVDEVSMVDVSLMNQLLRAVPDHAGVLLVGDV 454 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV GAVL D+ A L Sbjct: 455 DQLPSVGPGAVLADLIASGAVV-------------------------------TARLTDI 483 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R S I A IN G Sbjct: 484 FRQAEASRIVVNAHRINAGQFPEDPD---------------------------------- 509 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH-RHPHSRWY 477 + + Q+L + G G LN ++ + + + Sbjct: 510 --------PERFGLDPVADIQVLTPMNRGGLGARALNGALQAALNPTTQPRLERFGWTYA 561 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 G V+ ND +FNGDIG + +G + L +A + Sbjct: 562 PGDKVIQLVNDYDKEVFNGDIGRVVSIDLEEGEVVIDFEGRTVVYETGELDALALAYATS 621 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE-R 596 +HKSQGSE+ + L +Q ++ R L+YTAVTR RR + L A R L+ A+ R Sbjct: 622 IHKSQGSEYPAVVIPLATQHYTLLQRNLLYTAVTRGRRLVVLIAQPRALAMAVKQTGAGR 681 Query: 597 RSGLAALFS 605 + L Sbjct: 682 LTKLRERLQ 690 >UniRef50_B0P921 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P921_9FIRM Length = 753 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 144/606 (23%), Positives = 240/606 (39%), Gaps = 102/606 (16%) Query: 27 VAGDEHPAVTLAAALLSHDA--GEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEEC 84 +A D + ++ + GH CLP +L E + L+ T + + Sbjct: 220 LAPDSYERISAGLLHVLRHNVFHNGHTCLPEEKLL--ETAALLVETDTYHVSD------- 270 Query: 85 LLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL-LAQTLDK 143 + ++RG+ + LYL R + E + + + + A + + L + Sbjct: 271 -ALEELIARGELVRLAVKDRSFLYLPRYYEAECCIVNRLSLMLSKGAAEHAPDMEEILGR 329 Query: 144 LFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRL 201 L S Q++A A+T + +++GGP T ++A+I++ ++ L Sbjct: 330 LERESGIVYAELQRMAIVTAVTSPLMILTGGP----GTGKTTAISAIIRLLGKMGEKVAL 385 Query: 202 AAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP----GSQRLRHHA 257 AAPTG+AA R++E G ++ T+HRLL G + + + Sbjct: 386 AAPTGRAAKRMSELTGA-----------------ESKTIHRLLEVDFADGSGLTKFKRNE 428 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL D +++DE SM+D + L+ AL R+I +GD DQL SV AG +LGD+ A Sbjct: 429 KNPLPFDAVIIDETSMMDTLLFESLLRALKFSCRLILVGDPDQLPSVGAGNILGDLIA-- 486 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G H+P + L + +R + S I A A+ G Sbjct: 487 ----------------GGHLP-------------VVHLTEIFRQAAKSLIVTNAHAVVAG 517 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 + + V DF + L A DL R + Sbjct: 518 EYPRLD-VRDNDFFFLPDTLAAHACATAA-------------DLYARRLPKRYGFSPMWD 563 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIARNDSAL--- 491 Q++ R G G A LN ++ + +K + + EG VM RN+ L Sbjct: 564 IQVIAPTRVGAAGTAELNRVLQNAVNPPSPNKKEYVSGPVTFREGDKVMQIRNNYDLVWQ 623 Query: 492 --------GLFNGDIGIA-LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 G+FNGDIG+ L + + + E E +A+TVHKSQ Sbjct: 624 KDGGEDGMGVFNGDIGVIDLINRPSATIVVRFDEDRLAEYSFDMANELELAYAITVHKSQ 683 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGL 600 G+E+D L L ++ + R L+YTA+TRA++ L + + + R+ R + L Sbjct: 684 GNEYDAVILPLMEGKSRMYYRSLLYTAITRAKKLLIILGSASAVKTMVDNHKRSRRYTNL 743 Query: 601 AALFSS 606 L Sbjct: 744 RYLLDE 749 >UniRef50_A6NZ80 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZ80_9BACE Length = 738 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 154/612 (25%), Positives = 241/612 (39%), Gaps = 101/612 (16%) Query: 23 FALTVAGDEHPAVTLAAALL---SHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQ 79 AL + L A LL SH+ GH LP +L A L + L+ Sbjct: 202 LALDQGMEGDDPQRLEAGLLFELSHNLNNGHTFLPRRKLLAATAQLLGLEDLDTLGDGLE 261 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQ 139 E Q + G+E +YL ++ E VA+ E++ + + Sbjct: 262 ALIERGEVIQEETAGEEA---------VYLFDLYEAECFVAQRLAEMSREELLPPEDMDT 312 Query: 140 TLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 +D++ Q+ A +A ++ +++GGP T L ++ + D Sbjct: 313 VIDRIQRDQGITYAPQQRSAVELAARSQVMLLTGGP----GTGKTTSLRGVLALFDHMGL 368 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG--AQPGSQR--L 253 LAAPTG+AA RL E G +A T+HRLL PG+ + Sbjct: 369 DTALAAPTGRAAKRLGELCGM-----------------EAYTIHRLLETQFDPGTGKLVF 411 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 H PL D ++VDE SM+D+ +M L+ AL R++ +GD DQL SV G VL D+ Sbjct: 412 AHDESEPLKADAVIVDETSMVDVTLMRALLSALRGECRLVLVGDPDQLPSVGPGNVLSDL 471 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 R L + +R + S I A + Sbjct: 472 IRSG-------------------------------RVPTVRLTEIFRQAAQSAIVMNAHS 500 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 +NRG+ + +DF + + D I ++L + R + I Sbjct: 501 VNRGELPDLHNSAAKDFFFLRRTDPVRVADTI-------------VELCKTRLPEKMGI- 546 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSA 490 ++ Q+L R G A LN I++ + + R + EG VM RN+ Sbjct: 547 PADQIQVLSPTRRHTTGTASLNRSIQEAVNPAQPGKAERRFGEYIFREGDRVMQVRNNYD 606 Query: 491 ------------LGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 +G+FNGDIG+ + V +G P L E E +A+TV Sbjct: 607 IMWRGKDNTDTGMGIFNGDIGVIVKVDNRDEVITVDFEGRTVEYTPDMLMELEPAYAVTV 666 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA--TRTER 596 HK+QGSE+ L ++TR ++YTA+TRAR + DE ++ ++ + R Sbjct: 667 HKAQGSEYRAVILAALDGAPMLLTRGVLYTAITRARELFIVVGDEGKVAQMVSNNRQQRR 726 Query: 597 RSGLAALFSSRE 608 SGL A +S E Sbjct: 727 YSGLRARLASIE 738 >UniRef50_D1PL62 Helicase, RecD/TraA family n=3 Tax=Ruminococcaceae RepID=D1PL62_9FIRM Length = 743 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 151/594 (25%), Positives = 238/594 (40%), Gaps = 105/594 (17%) Query: 38 AAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP 97 +L H+AG GH CLP ++L A L+ + E G +E L + + R + Sbjct: 221 IVYVLRHNAGNGHTCLPRAKLLETTAKFLLVTSLDIENG----LDELLQSGELQPRTFDD 276 Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVN-----HAIEVDEALLAQTLDKLFPVSDEIN 152 T + ++L + E +A E++ ++ + A + + FP + Sbjct: 277 T------EYIFLPDLLSAEEDIAARLGELSTFPTEPPKTLESDIHALEIVQGFPYA---P 327 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q+ A +AL+ R+ V++GGP T + A++ + +GE R+ L APTG+AA RL Sbjct: 328 LQREAIRMALSNRVMVLTGGP----GTGKTTTVNAILSLYEGEYDRVALCAPTGRAAKRL 383 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ--PGSQRLRHHAGNPLHLDVLVVDE 270 +E AST+HRLL G+ R H+ N L DV+++DE Sbjct: 384 SELTHHT-----------------ASTIHRLLEVDYTTGAVRFIHNEKNLLKYDVIILDE 426 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 SM+D+ + L+ A H R+I +GD DQL SV G +LG+I + Sbjct: 427 MSMVDVKLFQSLLAAARYHCRIIMVGDADQLPSVGPGNILGEILSAGVVP---------- 476 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 L + +R S I Q A I +G++ K Q DF Sbjct: 477 ---------------------TVRLTEIFRQAQKSLIVQNAHRIVQGEQPQ-KGTAQDDF 514 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG 450 +EK L + DL+ R + Q+LC ++G G Sbjct: 515 FIMEKNGLACQK--------------LICDLVSERLPRAYGFDPIRDIQVLCPAKKGTTG 560 Query: 451 VAGLNERIEQFMQQ-----KRKIHRHPHSRWYEGRPVMIARNDSA-----------LGLF 494 LN +++ + + G VM +ND +G + Sbjct: 561 SVELNRCLQEVLNPPSPRKPQLGGEKGSKILRLGDKVMQIKNDYDITFERSGAEAGVGAY 620 Query: 495 NGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 NGD+GI + +R M D +L E E +A+T+HKSQGSEF + + Sbjct: 621 NGDMGIITEVDVESRSVTVMMDDRKYVYSADQLGELEPAYAVTIHKSQGSEFPAIIVPVA 680 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSS 606 + R L+YT VTRAR+ L I+ + + R S L L Sbjct: 681 DVPPRLRYRNLLYTGVTRARKLCILTGSHWIVEQMVRNVRQNLRYSCLRYLLKE 734 >UniRef50_D1U587 Helicase, RecD/TraA family n=2 Tax=Desulfovibrio RepID=D1U587_9DELT Length = 736 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 152/606 (25%), Positives = 238/606 (39%), Gaps = 93/606 (15%) Query: 16 LRPLDVQFALTV--AGDEHPAVTLAAALLSHDA--GEGHVCLPLSRLENNEASHPLLATC 71 R D Q A+ + A D + A + GH+ +P L ++ A + Sbjct: 197 FRTAD-QMAMKLGFAPDCAQRLEAAIVYALFTSCERSGHLFIPKDTLLSDVARMLDTSDY 255 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV-NHAI 130 L + EE E P D +YL + E + + ++ +H Sbjct: 256 DRLELALYSLEEKKRVRI------ENLPEQGVSDAVYLMHFYHYENEITQRLYQLVSHPT 309 Query: 131 EVDEALLAQTL----DKL-FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 185 V + +TL DKL F +SDE Q+ A A + ++ +I+GGPGTGKTT ++ Sbjct: 310 PVSRKKIDKTLPLVEDKLGFKLSDE---QRRAVFEACSNKVFIITGGPGTGKTTITKAIM 366 Query: 186 AALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 L ++ ++ AAPTG+AA R+TE+ G A T+HRLL Sbjct: 367 LTLKEL----GLTVKQAAPTGRAAKRMTEATG-----------------HPAHTVHRLLQ 405 Query: 246 AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 QP + L DVLV+DEASM+D + ++ +LP R+I +GD +QL SV Sbjct: 406 YQPDGG-FHYCEDQKLKADVLVIDEASMVDAHLFVSILRSLPHTCRLILVGDVNQLPSVG 464 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 G VL D+ R +L +R +S Sbjct: 465 PGNVLADLINSE-------------------------------RVPCAVLTHIFRQAQES 493 Query: 366 GIGQLAAAINRGDKTAVKT--VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 I A IN G + DF I + + I LD + Sbjct: 494 FIVVNAHRINSGQFPRQHPCQAPEADFFWIPQEDSAKVQKLI-------------LDSVC 540 Query: 424 ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW---YEGR 480 R + + Q+L + +G G LN ++ + R ++ G Sbjct: 541 ERIPERYGLDPRRDIQVLTPMHKGDVGTQALNAALQARLNPPGPHVRELKRKFATYRAGD 600 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 V+ +N+ +FNGD+G +D + DGN + L E +A++VHK Sbjct: 601 RVIQLKNNYDKEVFNGDLGWIVDVDTEAQELLVEFDGNNVQFEAGELDELGLAYAVSVHK 660 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRS 598 SQGSE+ + + +Q ++ R L+YT +TRAR L ER + T +R + Sbjct: 661 SQGSEYTAVVMPIVTQHYMLLQRNLLYTGLTRARELAVLIGSERAFQIGLNNATAGQRNT 720 Query: 599 GLAALF 604 LA Sbjct: 721 NLAYRL 726 >UniRef50_B0TIF8 Exodeoxyribonuclease V, alpha chain, RecD n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TIF8_HELMI Length = 717 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 151/595 (25%), Positives = 230/595 (38%), Gaps = 89/595 (14%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 + L EGHV LP S L + + E E +N Sbjct: 165 AHRLGFRGDEPKRLQAALVYCLYLARDEGHVYLPASELLAQTGNILARSELYPEAPEEKN 224 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH---AIEVDEALL 137 E V+ E + L GD YL ++ ER VAR ++ VD + Sbjct: 225 LHEQ------VAEAAEAQVIRLFGDGCYLPELYRAERVVARVLRRLSEEGEPWPVDVESV 278 Query: 138 AQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 T+++ F + QK A ++VI+GGPGTGKTT + L+A + + Sbjct: 279 IATMEEDFGIRY-AERQKAAFFGVANHGLTVITGGPGTGKTTIIRGLIALVNRA--RPNA 335 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 I L APTG+AA RL E+ G + A T+H+ LG + G Sbjct: 336 DIVLCAPTGRAAKRLAETTG-----------------QPAFTVHKALGLRGGKTDPFWDV 378 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 PL DV++VDE SM+D+P+M+ L+ AL AR++ +GDRDQL SV G VL DI + Sbjct: 379 -EPLEADVVIVDEVSMVDIPLMAGLLRALKKGARLVLVGDRDQLPSVGPGQVLRDIIEHD 437 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 ++ L +R S I + I G Sbjct: 438 V-------------------------------GAILRLNHIFRQAETSAIVTESHRIRSG 466 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 + ++DF + + D + Y + Sbjct: 467 ILPDLSG--RKDFLFLRRNSSAEILDALLQTVNRAIKRAGY---------------GLAD 509 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 Q+L +R GV LN+ +++ + ++ + + G VM +N+ +F Sbjct: 510 VQVLSPMRFTEVGVWNLNKLLQEQLNPMNTGKREVKAGDHVFRTGDKVMQLKNNYEKDVF 569 Query: 495 NGDIGIALD------RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 NGD+G D D + S S + +A TVHK+QGSE+ Sbjct: 570 NGDLGFIEDILLSGEEETDEDTIVVRFDEGLVSYGRSEWDQLMLAYATTVHKAQGSEYPV 629 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLA 601 + + Q ++ R LVYTAVTRAR + L L+ A+ + R SGL+ Sbjct: 630 VVMPMTLQHRRMLRRNLVYTAVTRAREKAILIGMADALAFAVTNEQDAFRYSGLS 684 >UniRef50_C8XGW8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGW8_NAKMY Length = 632 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 230/611 (37%), Positives = 312/611 (51%), Gaps = 37/611 (6%) Query: 16 LRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 L DV A +A G+ V LA A+ G VC+ L++ + LLA Sbjct: 36 LSAADVHVATRIAQLAGEPDDRVRLAVAMAVRGIRSGSVCIDLAQ----ARATLLLADPG 91 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN--EVNHAI 130 + L +W + + AS V G P+ D LYL+R E+ V Sbjct: 92 GDWPVLPDWRDAVRASLLVGAG---RPLQWEFDLLYLDRYRTQEQQVRDDLRDRRAQPPP 148 Query: 131 EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ 190 VD LA LD+LF D Q+ AA +A T +VI GGPGTGKTTTVA++LA L+ Sbjct: 149 VVDRVALADGLDRLFAGGD--PGQRHAAELAATGWTTVIGGGPGTGKTTTVARVLALLMG 206 Query: 191 MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG- 249 G R R+ +AAPTGKAAARL ++ L D ASTLHRLLG PG Sbjct: 207 Q-PGARPRVAMAAPTGKAAARLQAAVQAQAVALSPADRH-DLPTLTASTLHRLLGWLPGR 264 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 SQR RH N L DV+VVDE SM+ L MM+RL++A+ AR+I +GD DQLASVEAGAV Sbjct: 265 SQRFRHDRDNRLPFDVVVVDETSMVSLTMMARLLEAVRPDARLILVGDPDQLASVEAGAV 324 Query: 310 LGDICA-----------YANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 L D+ A +A +A + S VP G A + D++ LL ++ Sbjct: 325 LADLVAGLTAVPAAPPATGSATGSATESAAGSAAGPGAVPPGPPAIAPARADAVALLDRT 384 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS----GEDYIAMLEEALAG 414 +RFG D I +LAAA+ GD A V + D+ + G A + + G Sbjct: 385 WRFGGD--IAELAAAVRAGDADAALAVLARPGADVALIAPEDTAGAGAAVDAAVRPDVVG 442 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 + E ++ + +++LCA R GP GV RIE ++ + + PH Sbjct: 443 TAAAVRAAADAGEAQEALRRLDGHRVLCAHRSGPRGVTQWTYRIENWLAAEDLLP--PHR 500 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 WY GRPV++ ND L LFNGD+G+A+ G RV F+ G I P RL + +T Sbjct: 501 LWYPGRPVLVTANDYTLRLFNGDVGVAVLTGGQLRVSFSQ-HGRIVDYAPGRLADVQTVH 559 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 AMTVH+SQGS+FD ++LP +P+ TREL+YTA+TRA+ R+ L E + AA+A Sbjct: 560 AMTVHRSQGSQFDRVTVVLPEADSPLCTRELLYTALTRAQTRVRLIGTEAEVRAAVARPA 619 Query: 595 ERRSGLAALFS 605 R SGL + Sbjct: 620 ARASGLRLRMA 630 >UniRef50_A6TL79 Helicase, RecD/TraA family n=35 Tax=Bacteria RepID=A6TL79_ALKMQ Length = 754 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 147/617 (23%), Positives = 242/617 (39%), Gaps = 109/617 (17%) Query: 22 QFALTVAGDEHPAVTL---AAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGEL 78 A + H + +L+ GEGH P +L + E Sbjct: 203 AIARNMGVHPHSKYRIHSGIKYMLNTFQGEGHTYAPGVKLIQRAEELLRVEEGQVEGAIQ 262 Query: 79 QNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH----AIEVDE 134 + L + R D+ +Y + E V + + IE+D Sbjct: 263 EL---ALNQEIQLERIDDEII-------VYSMPYYYAESNVCKKLISLAQVELDPIEMDI 312 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 Q +++ ++ QK A A+ ISVI+GGP T + +LI++ + Sbjct: 313 DEELQKIEQAEEMT-LAKQQKEAIKEAIENGISVITGGP----GTGKTTTINSLIKVFEK 367 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-- 252 ++ LAAPTG+A+ R+TE+ GK ++ T+HRLL G R Sbjct: 368 LELKMLLAAPTGRASKRMTEATGK-----------------ESKTIHRLLELGFGDDREG 410 Query: 253 --LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 + + NPL V+++DE SM+D+ +M+ L+ ++ RV+ +GD DQL SV AG VL Sbjct: 411 MLFQRNEDNPLDCHVIIIDEVSMVDIILMNSLMKSIARGTRVVLVGDVDQLPSVGAGNVL 470 Query: 311 GDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 DI L + +R +S I Sbjct: 471 RDIIDSKVVK-------------------------------TIRLTEIFRQAQESMIVVN 499 Query: 371 AAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL 430 A IN+G + Q+DF +++ + ED +A + ++L++ R Sbjct: 500 AHRINQGLYPQLNEK-QKDFYFMKRN---AKEDVLATV----------VELVRDRLPKHY 545 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARN 487 A + Q+L +++G G LN+ ++ + + + EG VM +N Sbjct: 546 QFDALRDIQVLTPMKKGETGTLNLNKELQAALNPPNVSKAEKDLKEKIFREGDKVMQIKN 605 Query: 488 DSAL---------------GLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRLPEHE 531 + L G+FNGDIG + + D + ++L E E Sbjct: 606 NYTLKWRCLDPMAEEQKGEGVFNGDIGYVQSIDTEAEELVILFDDQKQVNYSFTQLDELE 665 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +++T+HKSQGSEF + + ++TR L+YTAVTRAR + L E L + Sbjct: 666 LAYSVTIHKSQGSEFPVVVIPITWGPPMLLTRNLLYTAVTRARSLVVLVGVESYLKKMVD 725 Query: 592 TRT--ERRSGLAALFSS 606 ER SGL Sbjct: 726 NNKIIERYSGLGRRLGK 742 >UniRef50_C0VHS0 Exonuclease V alpha subunit n=7 Tax=Acinetobacter RepID=C0VHS0_9GAMM Length = 601 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 274/583 (46%), Gaps = 75/583 (12%) Query: 56 SRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 + + L ++ +Q LA + + P + L L R W Sbjct: 57 AHVLQQLIEASLNGDSCIQVDLVQLEALGDLAIPSEKAATQVAPCVYDQQGLALYRYWQL 116 Query: 116 ERTVARFFNEVNH--AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 E+ +A+ + +D + L+ F Q+ A + L + +S+I+GGP Sbjct: 117 EQRLAQQICRLKRQMTPVIDISEYESLLEDEF--------QQAALKMVLQQWVSIITGGP 168 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ---LPLTDEQK 230 GTGKT T+A+++AAL QM RI +AAPTGKAA R+ E+L + + Sbjct: 169 GTGKTYTLARIIAALNQMI--PDIRIAMAAPTGKAAQRMQEALQNSFNDPKLIASGLVTD 226 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 + + TLHRLLG Q R + PL DV+VVDEASM+DL + + L +A+PD Sbjct: 227 ELRNQSTQTLHRLLGM-GNRQIPRFNVKQPLPYDVIVVDEASMLDLNLATALFEAVPDSC 285 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 R+I LGD +QLASV+ G+VL D+ + L + Sbjct: 286 RIILLGDANQLASVDVGSVLADL-----------------------------QQVEGLAE 316 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ--------------------QDF 390 + LQ S RF + IGQLA I ++ + Q D Sbjct: 317 NRVQLQNSRRFSDKAKIGQLARFIQAQQASSESVLTQLEHEIVKPAPLQEMSLSKEMPDA 376 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL-------IIQAFNEYQLLCA 443 +E Q + ++ + G+ Y ++L++ D +I+ F++Y++L A Sbjct: 377 IQLEYLPEQLDIEIEQYQQKLMYGFNDYAEILKSYLHADQPEQYIQDVIRVFDDYRILAA 436 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 ++ G G+ LN E+++ Q+ + + + WY GRPVM+ ND LG+ NGDIGI Sbjct: 437 VKHGALGIEQLNRYAERWLNQQ--LKQIAVAEWYVGRPVMMTYNDYQLGISNGDIGICFK 494 Query: 504 RGQGTRVWFAMPDGNIKSVQPSRLP-EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 + + K + RLP +T +A+T+HKSQGSEF H A++L + +++ Sbjct: 495 HRTQAQQFEVFFPSLNKWIAAHRLPRNMQTAFALTIHKSQGSEFTHTAIVLDANAKKLLS 554 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 +EL+YTAVTRA++ ++L AD L A+ RT RRSGL + Sbjct: 555 QELIYTAVTRAKKVVTLLADPNALLQALTVRTVRRSGLVQKIN 597 >UniRef50_B2A0E3 Helicase, RecD/TraA family n=3 Tax=Bacteria RepID=B2A0E3_OPITP Length = 871 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 132/513 (25%), Positives = 212/513 (41%), Gaps = 55/513 (10%) Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNH------AIEVDEALLAQTLDKLFPVSDEINWQK 155 L + L E+ +A + I+ D A+ F Q+ Sbjct: 393 LSSRLIQLPHNDRAEQKIAEVVQRLTRVASGLPPIKTDAAVTWAEQKAGFTF---HELQR 449 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 A ALT + S+++GGP T +L AL+++ ++ R+ LAAPTG+AA RL E+ Sbjct: 450 RAVRAALTSKFSILTGGP----GTGKTTILRALVEILKAKKVRVHLAAPTGRAAQRLAET 505 Query: 216 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 G AST+HRLL P + + PL D L+VDEASM+D Sbjct: 506 TGGY-----------------ASTIHRLLKWDPAAGGFIANESTPLSTDFLIVDEASMLD 548 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 + S L+ A+P A ++ +GD DQL SV AG VL D+ A + L+ Sbjct: 549 TRLASALLQAVPARAHLLLVGDIDQLPSVGAGNVLKDLIVVAEGSAPHPQLSTLN----- 603 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ----QDFT 391 + A + L YR SGI A AIN GD + + ++ Sbjct: 604 -----SQPAALRAAIPVTRLSVVYRQKDHSGIVSTAHAINSGDASLPPAFGEIADVPPWS 658 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 D+ ED + + + + Q P+ + Q+L + +G GV Sbjct: 659 DLAFITAADAEDCLRKVIQLCTEFVP-----QKLHWPN----PIADVQVLAPMHKGVAGV 709 Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW 511 A LN +++ + + R + V+ RN+ LFNGDIG + Sbjct: 710 ANLNVQLQAALNPHARGLRAATGEYRPADKVIQLRNNYDKNLFNGDIGSVVSVDAEHGTM 769 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 A DG + + + + +++HKSQGSE+ + L ++ R L+YTA+T Sbjct: 770 VAEFDGEQHTFERGDFSDLALAYTISIHKSQGSEYPVVVIPLLKGHFMMLQRNLIYTAIT 829 Query: 572 RARRRLSLYADERILSAAIAT--RTERRSGLAA 602 R R+++ L + + A+ +R + L Sbjct: 830 RGRKKVYLVGEPAAYAMAVRNSESKQRLTHLRE 862 >UniRef50_C9KLF6 Helicase, RecD/TraA family n=3 Tax=Veillonellaceae RepID=C9KLF6_9FIRM Length = 740 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 149/615 (24%), Positives = 237/615 (38%), Gaps = 96/615 (15%) Query: 6 QLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHD-AGEGHVCLPLSRLENNEA 63 QL VE D + +L +A D+ + A +GH C+P + LE + Sbjct: 200 QLASEVEGIGFVIADSIAMSLGIAADDRSRIAAGIDFALQKIAQQGHCCIPEAALEKQAS 259 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + ++ LA + V +Y ++ E AR Sbjct: 260 DLLKVEQASVRKVLQDLLQDKQLAVEYVG----------SETLIYPPYLYRAEIKAARKL 309 Query: 124 NEVNH-----AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 + A+E D L +++ + + QK A L + V++GGP Sbjct: 310 LYLQKYADPIAMEADPTTLVARWEQIAGIR-LADKQKEALEDVLQYGVFVLTGGP----G 364 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T ++ +I + + + L APTG+AA RL E+ G + A Sbjct: 365 TGKTTVVRGMIDLLHLQGLTVLLGAPTGRAAKRLAEATG-----------------QKAV 407 Query: 239 TLHRLLGAQ----PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 T+HR+L AQ G+ + L DV+++DE SM+D+ +M + A+PD A VIF Sbjct: 408 TVHRMLEAQGAGGSGAPTFGKNEDEQLEADVIILDEVSMMDISLMQHFLAAVPDGAHVIF 467 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL SV G VL DI L +P+ Sbjct: 468 VGDVDQLPSVGPGTVLRDI------------------LRSGVIPS-------------VC 496 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L +R +S I A AIN G F +I +D A+ + + Sbjct: 497 LTDIFRQKGESSIVMNAHAINAGRLPVCSPQGDFQFWEI--------DDEEAVAAQIVEL 548 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRH 471 + L P + Q+L + G LN+ ++ + K R + Sbjct: 549 CTKVL--------PQQGFSPLTDIQVLAPMHRLSCGTDNLNKVLQAALNPKSPQRPELTN 600 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHE 531 + G V+ +N+ +FNGDIG + G R+ D + E Sbjct: 601 AAQTFRLGDKVIQTKNNYTKQVFNGDIGFVMAIEPG-RMTVHFSDELEVDYENGEFGELA 659 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI- 590 +A+TVHKSQGSE+ L L T ++ R L+YTAVTRA+R + L + L+ A+ Sbjct: 660 LAYALTVHKSQGSEYPVVILPLVRSHTIMMQRNLLYTAVTRAKREVVLLGSKAALNTAVG 719 Query: 591 -ATRTERRSGLAALF 604 ++R + LA Sbjct: 720 NNRTSKRYTLLAERL 734 >UniRef50_B0S3H7 ATP-dependent exodeoxyribonuclease alpha subunit n=2 Tax=Finegoldia magna RepID=B0S3H7_FINM2 Length = 743 Score = 397 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 149/625 (23%), Positives = 238/625 (38%), Gaps = 97/625 (15%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLS 56 M+ L++ + R D+ A + + + AA G+ + Sbjct: 174 MQNPYTLIDDIRGIGFRTADI-IAQRIDIEPDSPFRIKAAFKYFMEKEANSNGNCYVLED 232 Query: 57 RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 L EI Q E L+ S ++ D +R+YL ++ +E Sbjct: 233 DLIEGVEKL-----LDIEIKNRQETLESLIVSGIIAIDDTD-----DENRVYLPQIEKSE 282 Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 A + DE + L KL + Q A ++T ++ +I+GGP Sbjct: 283 MRCAMNIANILKTEIEDEFDVEYELSKL-ESEHLDDLQIEAIKKSMTEKMLIITGGP--- 338 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T ++ + ++ I LAAPTG+AA RL+ES E+ Sbjct: 339 -GTGKTTIINNITKIFKNNDKEIILAAPTGRAAKRLSESCN-----------------EE 380 Query: 237 ASTLHRLLGAQP--GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 A T+HR+LG P H NP+ D++++DEASM+D+ + L+ AL + RV+F Sbjct: 381 AKTIHRILGYIPVEDGTIFDHDEDNPIDCDLIIIDEASMMDIFIADSLLRALDSNTRVVF 440 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL SV+AG VL D+ + Sbjct: 441 VGDCDQLPSVQAGNVLNDLIECGEI-------------------------------TTIK 469 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L K +R +S I A IN G+ + +DF IE+ + + I Sbjct: 470 LTKIFRQAQNSNIIVNAHRINNGEFPILNEK-GKDFFFIEENDPERAKQTI--------- 519 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 LDL R F++ +L +++ G LN +++ + K + Sbjct: 520 ----LDLCAQRLPNFYKKDEFDDIIVLTPMKKSSCGTKELNTALQEVLNPKTPMTEEIEQ 575 Query: 475 R---WYEGRPVMIARNDSAL--------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQ 523 R + VM +ND G+FNGDIG + D S Sbjct: 576 RDRIFRLNDKVMQIKNDYTKEFIDDDAMGVFNGDIGRVTYVDPIDETVDVLFDDKTASFT 635 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 ++A+T+HKSQGSEF + + ++TR L+YTA+TRAR + L Sbjct: 636 KKECDGLTLSYAITIHKSQGSEFPIVVIPVTQAPFMLLTRNLLYTAITRAREIVVLVGSL 695 Query: 584 RILSAAIATRT--ERRSGLAALFSS 606 +IL I+ +R SGL Sbjct: 696 KILRQMISNNKIMKRNSGLDRRIKQ 720 >UniRef50_B4VXL3 Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VXL3_9CYAN Length = 777 Score = 397 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 143/586 (24%), Positives = 230/586 (39%), Gaps = 89/586 (15%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMI 101 L +GH LP S L L +C + + L + ++ Sbjct: 162 LQDARNQGHCFLPSSELIEAALG---LLSCPGHTPNPRLLNQVLENAL-------TQKIV 211 Query: 102 LCGDR---LYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-----INW 153 + G LYL ++ E VA+ ++ L + L KL V Sbjct: 212 VEGRLSESLYLKPIYRAEVNVAQLILYFASRSQLPIEPLKEWLQKLEAVEWRESDLLAPE 271 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ A + + IS+I+GG G GKT +L LI R ++ LAAPTGKAA R+ Sbjct: 272 QRQALLKSYAQPISIITGGAGRGKTH----ILKYLINWLTECRFKVALAAPTGKAATRMK 327 Query: 214 ESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 + G DA T+HRLL + Q+ + NPL +D L++DE SM Sbjct: 328 NATG-----------------LDAQTIHRLLQWRGYGQKFEFNQDNPLPIDWLIIDEFSM 370 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +D+ + + L+ AL H R++ +GD +QL SV AG VL D+ L Sbjct: 371 VDIFLFNSLLKALEPHTRIVLVGDHNQLPSVGAGMVLRDL------------------LI 412 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 VP L+K YR +S I A + RG ++ + Sbjct: 413 SEVVPCS-------------RLKKIYRQPEESPIIYAAEDVIRGVVPNLQRFNSP----L 455 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 + + + EA+A L R + +L ++ +L ++G GV Sbjct: 456 QWQEVSDCALLCRHTPEAIADTIVELVAQMQRDQVNLK----DQVMVLAPQKKGVVGVQA 511 Query: 454 LNERIEQFMQQKRKIH---RHPHSRWYEGRPVMIARNDSAL--GLFNGDIGIALD---RG 505 LN+R++ K+ + G V+ +N + NG+ G ++ + Sbjct: 512 LNKRLQPLFNPKQPEQPEVETGEVVYRVGDRVIQLKNRYDTIPAVMNGEGGWVIEVHPKS 571 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 Q RV A G + P + ++ +T HK+QGSEF + + L +++R+L Sbjct: 572 QPERVKVAFEGGAVVDYVPGIFEQIMHSFCLTCHKAQGSEFQYVIMPLSPSNHRMLSRQL 631 Query: 566 VYTAVTRARR-RLSLYADERILSAAIA--TRTERRSGLAALFSSRE 608 +YT +TRA L A++ R + L L S E Sbjct: 632 LYTTMTRASYGGFIAVGRPETLKFAVSVDKPMRRYTQLPLLLSESE 677 >UniRef50_A8ZX97 Helicase, RecD/TraA family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX97_DESOH Length = 736 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 136/534 (25%), Positives = 214/534 (40%), Gaps = 69/534 (12%) Query: 77 ELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH-AIEVDEA 135 E +E ++ P P + +Y ++ E +A + D A Sbjct: 252 ETALFELARAEELVITEMPGPDPDVAI---VYPADLYAAETGIAARLAAFASVPVTTDRA 308 Query: 136 LLAQTLDKL--FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD 193 Q +D++ Q L+ R+ V++GGP T L+ A+ + + Sbjct: 309 DSDQIMDQVVRQLAIQPSVEQLAVIQNILSHRVVVVTGGP----GTGKTTLIRAIAAVFE 364 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 G ++ LAAPTG+AA RL E GK +A TLHRLLG Sbjct: 365 GAGKKVMLAAPTGRAAKRLCEVSGK-----------------EAVTLHRLLGIGFEETPF 407 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + N L DV+VVDEASM+D+P+ L+ A P A ++ +GD QL SV G VL D+ Sbjct: 408 LKNQDNQLRADVIVVDEASMVDIPLFFALLSATPVTAGLVLVGDVYQLPSVGPGNVLRDL 467 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 A + + L + +R S I + A Sbjct: 468 IASGSLP-------------------------------VFELTQVFRQAEQSAIVRNAHR 496 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 I R + + + + + ++ IA DL +R + Sbjct: 497 IRRSEPPDLASAAAISPDTGFWFVEKETQEEIA---------ATIKDLCVSRLPRTFGLD 547 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGL 493 N+ Q+L + +GP G LN ++Q + ++ + + G VM RN+ + Sbjct: 548 PANDIQVLTPMHKGPLGTIALNHALQQALNPDGPGNKETLAGFRPGDKVMHLRNNYTKEV 607 Query: 494 FNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 FNGDIG R+ DG I E +A+TVHKSQGSE+ L + Sbjct: 608 FNGDIGTVAAVDTRRRMIDVNYDGRIVEYDVVEADELTLAYAITVHKSQGSEYPAVVLPM 667 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFS 605 ++ ++ R L YTA+TRAR+ + L + ++ A+ T R S LAA + Sbjct: 668 TTRHYTMLERNLFYTAMTRARQLVVLVGTSKAVAVAMRKNTPKTRLSLLAARLN 721 >UniRef50_C0QEU8 RecD1 n=2 Tax=Desulfobacterales RepID=C0QEU8_DESAH Length = 826 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 145/646 (22%), Positives = 244/646 (37%), Gaps = 91/646 (14%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEASHPLLATCVSEIGELQ 79 V ++ ++ D + + GH L S++ + L +L Sbjct: 208 VALSIGLSLDSPQRIMAGIEHVLAAGRNFGHCFLTFSQINQQASELLQL--------DLT 259 Query: 80 NWEECLLASQAVSRGDEPTPMILCGD----RLYLNRMWCNERTVARFFNEVNHAIEVDEA 135 + LL R +++ Y ++ +ER VA+ VD Sbjct: 260 HGLTRLLDQMEQDRLVMVRHLVIDNKVAEPCYYSRSLYFDERYVAKRVKASIGPCPVDRQ 319 Query: 136 LLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD 193 + + + V+ + Q + + SV++GGPG GKTTT L+ + M Sbjct: 320 RVTAWIHRYCRVNAMELSLEQAASVEGIVGEPFSVLTGGPGCGKTTTTRVLVELIRAMGR 379 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 + LAAPTG+AA R+ E +G ++A T+HRLLG Q GS Sbjct: 380 S----VLLAAPTGRAAQRMEELIG-----------------QEAKTIHRLLGWQNGS--F 416 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 R + +PL D L+VDE SM+D+ + + L+ A+P +V+F+GD DQL SV AG VL DI Sbjct: 417 RKNEKSPLDCDFLIVDECSMLDITLTASLLKAVPAACQVVFIGDSDQLPSVGAGNVLKDI 476 Query: 314 CAY--------------ANAGFTAERARQLSRLT--------------GTHVPAGTGTEA 345 A A + A ++++ V Sbjct: 477 IASNSVACFRLTEIFRQARESLIIKYAHKINQGEIPWIESPFKRPDAWQQRVDCLFVDAD 536 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 + R+ L + + R D Q + N + + I K+ + Sbjct: 537 EATREQLTFINRVKRLVDDPRENQTSRVSNPFEFGVNDPGLHGNPITIPKKFQHVDLQQV 596 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFN------------------EYQLLCALREG 447 + + L + + A + E Q+L + G Sbjct: 597 CGAKTEIEELKAVLKKVHPWSSLRYGYTALDTVKMLFQHWIPKYYGSSSEIQILTPMTRG 656 Query: 448 PFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR 504 G LN I+ + + + G V+ +N+ LG+FNGDIG + Sbjct: 657 TLGTINLNRVIQAAVNPLTHGTAQLKVGERIFRVGDRVIHRKNNYDLGVFNGDIGRIVSI 716 Query: 505 GQGTRVWFA--MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 PDG Q + E + +A+T+HKSQGSEF+ + + +Q ++ Sbjct: 717 DNVELTCVVSFFPDGREVIYQKEEVIELDLAYAVTIHKSQGSEFEIVIIPVMTQHYKMLF 776 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSS 606 R L+YT +TRAR + L+ A+ + +R++ L L + Sbjct: 777 RNLIYTGLTRARTLALFVGTRKALAMAVMNQDTGQRQTALEQLLAQ 822 >UniRef50_C7RH25 Helicase, RecD/TraA family n=4 Tax=Anaerococcus RepID=C7RH25_ANAPD Length = 719 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 136/576 (23%), Positives = 234/576 (40%), Gaps = 100/576 (17%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 GH CL + L A+ L + + L + + + Sbjct: 224 NGHTCLKYNTLSQKSANLLKLEEGRIKEVINDDIIAGKLVLVEIEDI----------NYI 273 Query: 108 YLNRMWCNERTVARFF-NEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRI 166 Y + + E++VA +++N D + + +S + QK+A A + Sbjct: 274 YSSNLLKAEKSVAMAIASKINEKYGFDVKID-------YDLSVFSDEQKIAIEKAFESMV 326 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 VI+GGP T ++ A+ ++ L APTG+AA R+ ES G Sbjct: 327 LVITGGP----GTGKTTIINAICKILSQNGLSYALTAPTGRAAKRIKESTG--------- 373 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 EDA T+HRLLG +P + NP+ D ++VDE SM+D+ +M L+ A+ Sbjct: 374 --------EDAYTIHRLLGIRPDEVVAEFNEENPIDKDYIIVDETSMVDIFLMKNLMAAI 425 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 D +I +GD DQL SV G VL DI Sbjct: 426 GDKTAIILVGDSDQLPSVGPGNVLKDILNTNVES-------------------------- 459 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L+K +R S I A IN+G + +DF I+ + D+I+ Sbjct: 460 ------VRLKKIFRQAGKSNIIVNAHRINQGKYPILNEK-DKDFFFID----TAASDFIS 508 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 +L L++ R + Q+L ++ +GV +N+ I++ + +++ Sbjct: 509 VLTS----------LVKERLTKYYNFDPIKDIQILSPSKKTDWGVVNINDHIQESINKEK 558 Query: 467 KIHRHPHSRWYEGRPVMIARNDSAL-----------GLFNGDIGIALDRGQ-GTRVWFAM 514 + + + + VM RN+ L G++NGDIGI + + + Sbjct: 559 NLLKINNKIFKLNDKVMQVRNNYDLKSINHEEDYDEGVYNGDIGIIENIDKIDESLDVRF 618 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 DG + + + + + ++A+T+HKSQGSEF + + ++TR L+YT VTRAR Sbjct: 619 DDGRLIRYKKEDIKDLDLSYAITIHKSQGSEFPCVIIPMMQVAPMLLTRNLLYTGVTRAR 678 Query: 575 RRLSLYADERILSAAIATR--TERRSGLAALFSSRE 608 + + L +++IL + R + L+ E Sbjct: 679 KIVILLGNKKILKTMVDNNKSNRRFTNLSYWIGEME 714 >UniRef50_B2JBK4 Exodeoxyribonuclease V, alpha chain n=2 Tax=Nostocaceae RepID=B2JBK4_NOSP7 Length = 705 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 136/603 (22%), Positives = 230/603 (38%), Gaps = 77/603 (12%) Query: 14 KQLRPLDVQFALTVAGDEH-PAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 LR + F L VA D +L+ A +GH LP +L N A Sbjct: 161 GFLRTDKIAFNLGVAPDSQFRYRAGLIHVLNEAAADGHCYLPQPKLIENVIKLLTTADHT 220 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN-EVNHAIE 131 E L + + + + R +LC YL + E+ +A+ + Sbjct: 221 PEEDALADIIKDMALKDDLIREKSEDQTLLC----YLPTYFHTEQNLAQLIQSRFCQPVA 276 Query: 132 VDEALLAQTLDKLFPVSDEIN---WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 D + +++ F S +I Q++A +A R+ +++GGPG GKT T +++ Sbjct: 277 QDMPRVRAWIER-FTKSRKIKLSPQQRLAVEMAAYSRVMILTGGPGCGKTFTTQIIVSLW 335 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 M I LAAPTG+AA RL++ +A T+H LL P Sbjct: 336 KAM----GKSIALAAPTGRAAQRLSQIT-----------------QLEAKTIHCLLEFDP 374 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 + NPL +V EASM+DL + S L+ A+ ++++ +GD DQL SV G Sbjct: 375 KTMGFLRDNQNPLPHTAIVALEASMLDLFLASSLVKAIQYGSQLLLVGDIDQLPSVGPGQ 434 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 L D+ HVP + L K +R S I Sbjct: 435 FLSDLIN------------------SGHVP-------------VVRLTKVFRQAQQSAII 463 Query: 369 QLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP 428 A INR ++ + ++ + + + + P Sbjct: 464 IAAHQINRSQFPTIEPISDNPVSECLWHGGGHHPKHGV----------KAISEIITDLIP 513 Query: 429 DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIA 485 L + Q+LC + G G LN ++Q + + + EG ++ Sbjct: 514 RLGYNLATDVQVLCPMSRGLLGTRNLNTVLQQLINPPSPDKVEITRGGNLLREGDRIIQL 573 Query: 486 RNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 ND +FNGD GI + + L + +W++T+H+SQGSE Sbjct: 574 TNDYNHEVFNGDFGIIKAIDPEEMEVTVQYGKHTVVRTGADLNQIALSWSLTIHQSQGSE 633 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAAL 603 + L + +Q +++R+ YTA+T A++ + ++ +S A+ + R + L Sbjct: 634 YPVVILPIYTQPYMMLSRKQFYTALTCAKQLAIVVGSKKAISKALRSSDGQLRYTRLQQR 693 Query: 604 FSS 606 S Sbjct: 694 LES 696 >UniRef50_A5EVY1 Exonuclease V, alpha subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVY1_DICNV Length = 524 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 178/522 (34%), Positives = 273/522 (52%), Gaps = 53/522 (10%) Query: 84 CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDK 143 L+ + ++ P++ G L+L R+W E +A + +A D+++L Sbjct: 55 ALIVTADAAKKGAVAPLVSDGTFLWLYRLWFQEWRLASCIQKKLNAA--DDSILEHN--- 109 Query: 144 LFPVSDEIN-WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 D +N QK A + LTR++S+I+GGPGTGKT TVA+++AAL +A I LA Sbjct: 110 --SFDDGLNAEQKQALKMGLTRQLSIINGGPGTGKTFTVARIVAAL--LARDPDLTIALA 165 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH 262 APTGKAA RL +L +A LT + A T+HRLLG + R+H L Sbjct: 166 APTGKAAQRLEIALHQAFITAQLTRPTQLTT---AQTVHRLLGVD-NTGTARYHEHYFLP 221 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 DV+++DEASM+ L + ++L AL H R+I LGD QLA+VEAGAVL D+ Sbjct: 222 YDVVIIDEASMLSLELAAQLFQALAPHTRIILLGDAQQLAAVEAGAVLHDL--------- 272 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 + ++L + LQ+S RF SGIG LA +TA+ Sbjct: 273 --------------------AQQSALNHHVVTLQESRRFHQTSGIGILARCTQNASQTAL 312 Query: 383 KTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLC 442 + DI L +Y + E Y Y+ + A A D+++Q F+ Y++L Sbjct: 313 TAALEH--EDIALSPLARRPNYDRLYE----PYRDYVAKVAAGAAVDVLLQQFDNYRILT 366 Query: 443 ALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL 502 R G +G A +NE++++ + ++ + +Y+G PVM+ RN+ A G+FNGDIGI L Sbjct: 367 KTRYGAYGTAAVNEQMKK--RHLAQMGVNGKRAFYQGAPVMVTRNNYAHGVFNGDIGICL 424 Query: 503 DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 +G + + D + + + + +A+T+HK+QGSEF+ AL+L Q +T Sbjct: 425 ADERGQMLVYFREDF-AVPLLFLKSDDLDFAYALTIHKAQGSEFEQVALLLDKQEEG-LT 482 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 RELVYT +TRA+++L L IL A+ T T+R +GL+ F Sbjct: 483 RELVYTGITRAKKQLLLETTPAILLKAMQTPTQRLTGLSTFF 524 >UniRef50_B4RTM2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RTM2_ALTMD Length = 731 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 198/701 (28%), Positives = 298/701 (42%), Gaps = 125/701 (17%) Query: 23 FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLA--------TCVSE 74 F ++ ++ LS+ GH C+ L + +A + S Sbjct: 31 FIEQLSQEDAFIWAGILVYLSYMQRNGHSCIYLKDVAGTTLFEDAVALENNASAPSAKSS 90 Query: 75 IGELQNWEECLLASQAVSRGDEPTP----------------------------MILCGDR 106 E ++ + E P + R Sbjct: 91 ASEQNMALTQVMEPKVQQNKGEKAPKTGFEVPELTPLLKIVKSALGNEQLAKLFVYDNGR 150 Query: 107 LYLNRMWCNERTVARFFNEVNHAIEVDEAL---LAQTLDKLFPVS--DEINWQKVAAAVA 161 LY R + E+ VAR E + + + + +FP + D+ +WQ++A A + Sbjct: 151 LYSRRYYEFEQEVARSVVERAVLHPLHDDVADNVKALWPAIFPTTTTDQQDWQQIAVAKS 210 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 L +R VI+GGPGTGKT TV +LL AL A E +I LAAPTGKA R+TES+ ++ Sbjct: 211 LMQRFCVINGGPGTGKTYTVLRLLLAL--QACDEELKIVLAAPTGKAQQRMTESIMNSVE 268 Query: 222 QL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 L ++D +P +A TLHRLLG + +++ N L DVL+VDEASM+DL +M Sbjct: 269 GLRGKVSDTALDSVPTEAVTLHRLLGLREHGVATKYNQHNKLSADVLIVDEASMVDLALM 328 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA-GFTAERA-----RQLSRLT 333 +R++ ALPDHAR+ F+GD DQL +VE G VL + + A F+ E + T Sbjct: 329 TRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSDETALDFSHENPLAGGENSSNERT 388 Query: 334 GTHVPAGTGTEAASLRDSLCLL-----QKSY--------RFGSDSGIGQLAAAINRGDKT 380 VP+ A+L L LL KSY RF + ++A AI RGD Sbjct: 389 LGGVPSSMRQHIATLCPHLPLLPVNEQAKSYVATLQAPQRFKGQ--VARVATAIQRGDAN 446 Query: 381 AVKTVFQQ-----------------DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 Q D I + + + E+ G L + Sbjct: 447 GALAAIAQKNSGSKQGDNASQPKSADEKSINTNSRSRLQPGVHLWPESQLGGRELQQLAK 506 Query: 424 ARAEP-------DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW 476 P + + N + L +R+G GV GLN + ++ K R + Sbjct: 507 ESFLPLFEAQSAEEALNRLNYVRWLTPIRKGAMGVEGLNNLVFDAIKHK---IRRREGHF 563 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRGQGTR-VWF---AMPDGN-------------- 518 Y+G+P+MI +N L NG++G+ G WF +G Sbjct: 564 YQGQPIMIVKNHHPQRLSNGEVGVIWPDSTGKLYAWFYQDTYVEGQQAGKSLNDSSNNSS 623 Query: 519 ----------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP----VVTRE 564 ++S+ SR+P+ ET +AMT+HKSQGSEF+H LILP + + R Sbjct: 624 AQNLGQQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNHVVLILPKPESEKAANLFHRG 683 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 LVYT +TRA+ + +D S +AT +R SGL++ S Sbjct: 684 LVYTGLTRAKDGCLIISDSNTFSGMVATVDKRYSGLSSAIS 724 >UniRef50_A5WER9 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Psychrobacter RepID=A5WER9_PSYWF Length = 787 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 183/563 (32%), Positives = 277/563 (49%), Gaps = 109/563 (19%) Query: 108 YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKV-AAAVALTRRI 166 +L+R W E +A+ + + + LD P D +N Q+V A VA Sbjct: 267 WLHRTWQAEFNLAKTIQNILNQP-------IKPLDIHIP--DNLNAQQVQAVKVANENAF 317 Query: 167 SVISGGPGTGKTTTVAKLLAALIQ--------MADGERCRI---------RLAAPTGKAA 209 S+I+GGPGTGKT TVA+L+ AL Q A GE I L+APTGKAA Sbjct: 318 SIITGGPGTGKTYTVAQLVIALQQAQANSDAQQALGEGSTIRFSTDSAGLALSAPTGKAA 377 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 R+ ESL Q L + Q + ++A T+HRLLG R R+HAGNPL D+++VD Sbjct: 378 QRMQESL-----QAALDNAQVEVQLQEAKTIHRLLGIGRDG-RPRYHAGNPLGEDIIIVD 431 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 EASM+ + + + L+ A+ AR+I LGD +QLA+V+AGAVL D+C Sbjct: 432 EASMLGVELANYLVSAIKPGARLILLGDANQLAAVDAGAVLADLCR-------------- 477 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG--DKTAVKTVFQ 387 L+ L +S RF +DSGIG+LA IN D V + Sbjct: 478 ---------------IDVLQPIHAQLTESRRFHADSGIGKLATQINTTPTDMQQVWQLLT 522 Query: 388 QD----FTDIEKRLLQSGEDYIA--------------------MLEEALAGYGRYLDLLQ 423 D F + +L D A ++ + Y YL+ + Sbjct: 523 HDEALQFQSVNIQLGSDATDREADDVETAVFNHQLINSLSNKKIISKLSQNYLPYLNKIH 582 Query: 424 A--------------RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH 469 ++ FN +++L A G +G +N+ + ++ + K+ Sbjct: 583 QLIKHPIAKSVPEAVSLTVSELMSKFNRFRILTAGHNGEWGDHNINDYLTRWHMTQLKLP 642 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWFAMPDGNIKSVQPSR 526 S W+ GRPVM+ +N+ LGLFNGDIGI L +G+G R+ + I+ + + Sbjct: 643 L-GKSPWFHGRPVMVLQNNYELGLFNGDIGICLQTQQKGEGGRLEV-FFENKIQGIAVNL 700 Query: 527 LPE--HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER 584 L + T +AMT+HKSQGSEFDH A+ + + ++++EL+YTAVTRA++++S+++ +R Sbjct: 701 LNDELIATAYAMTIHKSQGSEFDHVAVTFDNSNSRLLSKELIYTAVTRAKKKVSIFSTKR 760 Query: 585 ILSAAIATRTERRSGLAALFSSR 607 L A+ T T+R +GLA F + Sbjct: 761 ALQKAVQTPTQRYTGLALQFEQK 783 >UniRef50_Q14LX3 Putative exodeoxyribonuclease v alpha subunit protein n=1 Tax=Spiroplasma citri RepID=Q14LX3_SPICI Length = 720 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 135/567 (23%), Positives = 237/567 (41%), Gaps = 85/567 (14%) Query: 47 GEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR 106 G L L+ L H + L S E +I D+ Sbjct: 227 NNGDTYLTLNELTKILQKH-------FSSLTKEQLLAGLKYS------KEIKLLIFKNDK 273 Query: 107 LYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTR 164 +Y+ ++ +E +A +N + D+ L + L+KL I Q A A+ Sbjct: 274 IYVAEVYHSEINIAAMLVGLNTTDQYDDQKLTEELEKLTNKKQIIYNMNQTKAIKTAVHS 333 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 VI GGPGTGKTT V +++ L ++ ++ +I LAAPTGKAA RL E G+ Sbjct: 334 NFLVIIGGPGTGKTTVVDGVVSLLKKVY--QQSKIVLAAPTGKAAKRLREKTGR------ 385 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 A T+H+LL + + ++ NPL D+L++DE SM+D +++++ Sbjct: 386 -----------KALTIHKLLKYDALTNQFFYNENNPLENDILILDEVSMVDSLLLAQIAK 434 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 A + ++I +GD +QL SV G +L DI Sbjct: 435 ASVNLRKLILIGDPNQLPSVACGDLLRDIIQSDVF------------------------- 469 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 ++ L++ YR + + I +L+ AI + ++DFT I + Q+ Sbjct: 470 ------NVIKLEEVYRQEAGNDILELSYAIEQEHFEDNNLFDKKDFTFINETDSQALLTV 523 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 + L + ++ + E D +N Q++ + GP G+ LN ++ M Sbjct: 524 VGDLYQNISN----------QYEAD-----YNAIQVIAPMYNGPVGINALNTYLQNRMNH 568 Query: 465 K--RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV--WFAMPDGNIK 520 +K + H + VM +N L ++NGD+GI +D + + + N+ Sbjct: 569 AVGQKEIKIGHRFFRVNDKVMQLKNRPELEIYNGDVGIIIDIKKDKNLNDVILVKYDNVI 628 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 + + +A +VHK QGSE+D+ ++ ++ R L+YTA+TRA+ +L L Sbjct: 629 TYTKELYYDITLAYACSVHKLQGSEYDNIIFVITKSFWMMLKRNLIYTAITRAKTKLYLI 688 Query: 581 ADERILSAAIAT-RTERRSGLAALFSS 606 + + +RR+ L + Sbjct: 689 GEPSAFLYGVNNLPQKRRTTLQEKIKT 715 >UniRef50_Q8R8A3 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A3_THETN Length = 723 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 137/576 (23%), Positives = 234/576 (40%), Gaps = 108/576 (18%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 EGH+ LP++ L + + ++G + ++ L + A D+ ++ Sbjct: 224 EGHLYLPITTLCKAA------SEKILKVGYTKVLDQALYLTAAQELYDDE-------GKV 270 Query: 108 YLNRMWCNERTVARFFNEVN-----HAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVAL 162 YL + + NE+ +A ++ +DE + K S + QK A A+ Sbjct: 271 YLPKNFYNEKYIAEKIAKMLNEKPWRINNIDELIKEAEAAKNIRYSPK---QKEAIKKAV 327 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 IS+I+GGP T +++AL+ + + + LA+PTGKAA RL E Sbjct: 328 ENNISIITGGP----GTGKTTIVSALLYIFQKQDKLVALASPTGKAAKRLEEVT------ 377 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQ----RLRHHAGNPLHLDVLVVDEASMIDLPM 278 A T+HRLL A+ + R + NPL DV+++DE SM+D + Sbjct: 378 -----------IYPAKTIHRLLEARFDKEFRSVRFFRNENNPLDEDVVIIDEFSMVDNEL 426 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 + L AL +++ +GD DQL SV AG VL D+ Sbjct: 427 AASLFKALRKDTKLVIIGDMDQLPSVGAGNVLRDLIESGIIP------------------ 468 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 + L +R G SGI + I G V + I L+ Sbjct: 469 -------------VTKLDVIFRQGETSGIILNSKLIREGKM-----VRFNNKDFIFHELV 510 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 + + ++E G + ++ Q+L +++ G LN I Sbjct: 511 KPEQVVDEFIKELEKG------------------KTLDDVQILTPMKKTDIGTLELNRLI 552 Query: 459 EQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWF 512 ++ + +++ + + G VM +N+ +FNGD G +G R Sbjct: 553 QERINPPHPQKEEIAYGSKIFRVGDKVMQTQNNYEKEIFNGDTGYVKRAYRDEEGLRHVV 612 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 DG I + L E +A+T+HKSQGSE+D ++L ++ R L+YTAVTR Sbjct: 613 IDFDGRIVDLVEEELKEIIPAYAITIHKSQGSEYDTVIVVLAMNHYIMLKRNLLYTAVTR 672 Query: 573 ARRRLSLYADERILSAAIAT--RTERRSGLAALFSS 606 A+ + ++ D + + AI T ++R + L + Sbjct: 673 AKNVVKIFGDMQAIKIAINTIDSSKRYTALKERLKN 708 >UniRef50_Q3AB49 Helicase, RecD/TraA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB49_CARHZ Length = 745 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 136/593 (22%), Positives = 242/593 (40%), Gaps = 111/593 (18%) Query: 38 AAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP 97 +L +GHV LPL+ + N + + E + +E L + R E Sbjct: 224 IVYVLKEALEQGHVYLPLAEVYNKGLA------LLGEGIGPETLDEGL---SVLLRTGE- 273 Query: 98 TPMILCGDRLYLNRMWCNERTVAR----FFNEVNHAIEVDEALLAQTLDKLFPVSDEINW 153 + L DRLYL +++ E+TVAR + I + + L ++K +S + Sbjct: 274 --VCLERDRLYLKKLYDAEKTVARKVAFLLTITDKKINIKKPL--NEVEKKLGISYD-PL 328 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAK--------LLAALIQMADG--ERCRIRLAA 203 QK A ++ + K + ++ I++ + +I LAA Sbjct: 329 QKEALSLMFAEK-----------KLFILTGGPGTGKTTVIKGFIELYQRFFPKNKIALAA 377 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG----AQPGSQRLRHHAGN 259 PTG+AA RL+ES G A+T+HRLL + G R++ Sbjct: 378 PTGRAAKRLSESTGM-----------------PAATIHRLLEPEGETRSGELLFRYNKYE 420 Query: 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA 319 PL D++++DE SM+DLP+ + L +A+ R++ +GD +QL V G +L D+ A Sbjct: 421 PLPYDLIIIDEVSMLDLPLAAALFEAITPECRLVLVGDPNQLPPVGPGQLLKDLLA---- 476 Query: 320 GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK 379 ++ R++ L+ +R G D+GI ++A + GD Sbjct: 477 ------VEEIPRIS---------------------LKTVFRQGEDAGIIEVAHRVLTGDW 509 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 + ++ + + + ED + + L + + + + Sbjct: 510 SELERLLGR----------RILEDVFFLPAKDTENITNLLLKVVKKLWENYGYSP-EDIA 558 Query: 440 LLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYEGRPVMIARNDSALG---LFN 495 +L +R+G GV LN +++ + + + + + VM +N+ G +FN Sbjct: 559 VLSPMRKGALGVENLNVLLQKLFNGFETQEVKFFGTSFKVNDKVMQIKNNYERGEDGVFN 618 Query: 496 GDIGIALD--RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 G+ G + DG + + L E ++A TVHK+QG E+ L+L Sbjct: 619 GETGFIKKIIKSGDEEEIIVSFDGKNIKYRKTDLEELTLSYATTVHKAQGMEYPVVILVL 678 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALF 604 + P++ R L+YTAVTRA++ L + L A+ E R S L Sbjct: 679 HNYHYPLLKRNLLYTAVTRAKKMLIVIGTPWALRQAVENIKEETRYSSLPERL 731 >UniRef50_UPI0001AEC2FF exodeoxyribonuclease V, alpha subunit n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC2FF Length = 735 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 192/711 (27%), Positives = 297/711 (41%), Gaps = 128/711 (18%) Query: 16 LRPLDVQFAL---TVAGDEHPAVTLAA---ALLSHDAGEGHVCLPLSRLENNEASHPLLA 69 + +D A + E + A A LS+ GH C+ L + ++A Sbjct: 18 IEAIDKFVAKEFGFIDELEQEEQFIWAGILAYLSYMQRNGHSCIYLKDIAGTTLFKEVVA 77 Query: 70 TC---------------------------------VSEIGELQNWEECLLASQAVSRGDE 96 + + Q + A+S Sbjct: 78 EQEAVLAAETNVHSNNGAVGASKSPVEQTEQEKAPKAGVDVPQLTPLLRIVKSALSNEQV 137 Query: 97 PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEA---LLAQTLDKLFPV--SDEI 151 + +LY R + E+ VAR + + + + Q +FP +D Sbjct: 138 AQLFVYSNGKLYSRRYYEFEQEVARNVVKRAALTPLSDEASEKVKQLWPAIFPTETTDRQ 197 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 +WQ++A A +L +R VI+GGPGTGKT TV +LL AL A E +I LAAPTGKA R Sbjct: 198 DWQQIAVAKSLMQRFCVINGGPGTGKTYTVLRLLLAL--QACDENLKIVLAAPTGKAQQR 255 Query: 212 LTESLGKALRQL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 +TES+ ++ L L D +P DA TLHRLLG + + + N L DVL+VD Sbjct: 256 MTESIMNSIDGLRGKLDDAVLNNVPTDAVTLHRLLGLREHGVSTKFNQHNQLAADVLIVD 315 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF-------- 321 EASM+DL +M+R++ ALPDHAR+ F+GD DQL +VE G VL + + A F Sbjct: 316 EASMVDLALMTRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSTEAASFDENANVPN 375 Query: 322 -TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL-----QKSY--------RFGSDSGI 367 T + + VP+ A+L L LL KSY RF + Sbjct: 376 GTNSLNSNDNAFSLGGVPSLMRQHIATLCPHLPLLPVDEQAKSYVATLQAPQRFKGQ--V 433 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL------ 421 ++A AI RGD + +D ++ + ++ + + + L Sbjct: 434 AKVATAIQRGDASGALAAITDKASDNDETAGLNSNIDSTLVSKTASRLQSGVHLWPEHQV 493 Query: 422 ---------------LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 + + + N + L +R+G GV GLN + ++ K Sbjct: 494 SGRDLHQLAKESFLPIFDAGSAEEALNRLNVVRWLTPVRKGGMGVEGLNNLVFDAIKHK- 552 Query: 467 KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR-VWFAMP------DGN- 518 R +Y+G+P+MI +N L NG++G+ +G WF +G+ Sbjct: 553 --IRKREGHFYQGQPIMIVKNHHPQRLSNGEVGVIWPDSKGKLYAWFYQDSQASGQNGSS 610 Query: 519 --------------------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 ++S+ SR+P+ ET +AMT+HKSQGSEF+ LILP + Sbjct: 611 QKASANAGDSADKTLAQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNQVVLILPKPDS 670 Query: 559 P----VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 + R LVYT +TRA+ + +D S + +R SG++ S Sbjct: 671 EKAANLFHRGLVYTGLTRAKDGCLIISDTATFSHMVQRVDKRYSGMSEAIS 721 >UniRef50_C8P085 RecD/TraA family helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P085_ERYRH Length = 711 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 123/522 (23%), Positives = 223/522 (42%), Gaps = 85/522 (16%) Query: 96 EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA---IEVD--EALLAQTLDKLFPVSDE 150 + ++ GDRLY + +E V + + ++ ++D E+ +A +L D Sbjct: 260 QSGELVEDGDRLYHRTQYDSEVYVTQTLKDFKYSGYDFDLDDLESKIASIESQLRIEFD- 318 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 + Q+ A L + +++GGPGTGK+T ++ ++ L A+ I L APTG+AA Sbjct: 319 -DTQREAIESFLREDVMILTGGPGTGKSTLLSGVVTLL--QANCPWLHITLCAPTGRAAK 375 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 RL E A+T+H +L S + H NPL D+L++DE Sbjct: 376 RLEELTN-----------------VQAATIHSVLKWDLESNKFGMHEENPLETDILIIDE 418 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 SM+D +++ ++ A +++F+GD+DQL SV +G VLGD+ A Sbjct: 419 FSMVDTWLLAHILKASEKVKKLLFVGDKDQLPSVSSGFVLGDLIASKVFK---------- 468 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 L+++YR + S + LA +N+G + + +D Sbjct: 469 ---------------------TISLERNYRQEAGSEVIDLAVNMNQGLLDV--SNYHRDV 505 Query: 391 TDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 + R + + +++EA+ GY ++ Q+L + GP Sbjct: 506 RFFDSRYGSVKDIVLKVVDEAMQRGYD------------------LSDIQVLAPMYSGPA 547 Query: 450 GVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ 506 G+ LN +++ ++ + + EG ++ +N +FNGDIG+ ++ Sbjct: 548 GIDNLNHFLQKMCNPESPQKAQIMYGTRIFREGDKILQLKNQPDDFVFNGDIGMLVEVEA 607 Query: 507 GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 + DGN +PS +AM+VHK+QGSE+ L+ +++R L Sbjct: 608 --KRLVVDFDGNFVEYEPSSYINITHAYAMSVHKAQGSEYPIVILVAVRDFYRMLSRRLY 665 Query: 567 YTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAALFSS 606 YT TR+ + L L + + A+ +R + L Sbjct: 666 YTGATRSSKSLVLVGELEAFNTAVKNHHEAKRNTYLTERLQE 707 >UniRef50_D0W4K0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4K0_NEICI Length = 593 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 190/599 (31%), Positives = 279/599 (46%), Gaps = 53/599 (8%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 ++F A++ L GH + L + Sbjct: 28 IRFLERYTDSGAEALSSYIERLFQALQNGHSFIRLKK----------------------- 64 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLA 138 E L++ G+ +P+IL G++L+L RMW E +A + A D A Sbjct: 65 EEASFLSTLKPVVGESASPLILEGEKLFLGRMWQLEYDLAAEIKRLAAAGTSVPDTAGAR 124 Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 Q L K F Q+ AAA+AL + VI+GGPGTGKTTTVAKLLA + DG Sbjct: 125 QNLAKWFQGVG-SEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLALICS-GDGNLPH 182 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI-PEDASTLHRLLGAQPGSQRLRHHA 257 I LAAPTGKAAA + +L +A+ D ++ + + T+HRLL +P + + Sbjct: 183 IALAAPTGKAAAHMARALHRAINSFDAPDNVRRHLLKLEGQTVHRLLKLRPPKMQPAFNP 242 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 PL DVL++DEASM+D +M +L+ A+ ARVI LGD +QL SV GAVL + Sbjct: 243 VYPLPFDVLIIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGVGAVLSVLSQKT 302 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G + + L P ++ L + L S+RFG +SGIG L+ ++ G Sbjct: 303 LLGGEIYN-KLVEYLPEHGFP--LCSDVPVLAQNTARLSFSHRFGDNSGIGCLSRSVVSG 359 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 D+ F+ +K L S A +E + Y + + ++ Sbjct: 360 DEAQA----WALFSRFDKELEHSECRLNAQVERLYRTHKGYWQAVDEG-NIESAYTGISD 414 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +L A R+ NE ++++KR I H ++ G P+MI +ND ALGLFNGD Sbjct: 415 VVVLAAWRQ---DADNFNEAYCNYVRRKRNIPE--HQAYFAGEPIMIRQNDYALGLFNGD 469 Query: 498 IGIALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 IG+ +D R +F DG K V S LP+ E +AMTVHKSQGSE+ L+ P Sbjct: 470 IGLIMDNVQRSGSLSAYFPDTDG-FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPP 528 Query: 555 SQRTPV--------VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 S + ++REL+YTA+TRA+ + + E A AT R++ L + Sbjct: 529 SAASSNEEDDALSGLSRELLYTAITRAKEKFVFFGGEETFRQAAATVKVRQTALGNMLK 587 >UniRef50_A6W6P3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W6P3_KINRD Length = 634 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 205/619 (33%), Positives = 304/619 (49%), Gaps = 44/619 (7%) Query: 6 QLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE 62 L E + L DV A + G++ V LA AL G V L L ++ Sbjct: 38 LLREFNDLGLLHAADVHVARRLGAVTGEDDERVLLAVALAVRAVRHGSVVLHLRQVPETV 97 Query: 63 ASHPL-----LATCVSEIGELQNWEECLLASQAV------SRGDEPTPMILCGDRLYLNR 111 + + T + + W L S + P+ L GD L+L+R Sbjct: 98 VPEDVEDSGAVGTVAVRWPDPEEWLAALRRSPLLVEHAPGETTGPAAPLHLVGDGLWLDR 157 Query: 112 MWCNERTVARFFNEVNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVIS 170 W E VA + A+ D A + LD+L+P + Q+ AAAV L +SV+ Sbjct: 158 YWRQELAVAEDLRARSAAVAGYDPAAVDAVLDRLWP-GGLADDQRTAAAVCLAHGVSVLG 216 Query: 171 GGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 GGPGTGKTTTVA+LLAA+ ++ G R+ LAAPTGKAAARLTE++ A TD+++ Sbjct: 217 GGPGTGKTTTVARLLAAVHALSPGPP-RVALAAPTGKAAARLTEAVVSAAGTDGFTDDER 275 Query: 231 KRIPE-DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 + + ASTLHRLLG +PGS R R+ A + L DV++VDEASM+ L +M+RL+ AL Sbjct: 276 RFLRSTTASTLHRLLGIRPGSVRARYDAEHRLPHDVVIVDEASMVGLGVMARLLAALRPG 335 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 AR++ +GD QLASVE GAVL D+ A A A ++ Sbjct: 336 ARLVLVGDPQQLASVEVGAVLADLVAPAE--------------------RAAPGAAPAVP 375 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 + LL++++RF GI +AAA+ RG V + + D+E + E Sbjct: 376 HGVALLRRTHRFADRGGIAAIAAAVRRGAAEEVVDLLRAGGPDVEFLEVPDEELVAGAAL 435 Query: 410 EALAG----YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 EA+ + + + A + ++ LCA R G GV+ + +++ + Sbjct: 436 EAVRAEVLRRSAAVVEAARAGDAAAALTALDAHRTLCAHRRGTRGVSHWSALAQRWAVED 495 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPS 525 + R Y G PV++ ND +G+FNGD G+ LDR A G + V + Sbjct: 496 LGVQPRTDGR-YVGLPVIVTANDPGVGVFNGDTGVVLDRDGTLVAAIARGAGPLL-VPLA 553 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 RL E AMTVH+SQGS+FD ++ +R+P+ TRE+ YTA+TRA+ R+ + Sbjct: 554 RLAAVEPVHAMTVHRSQGSQFDVVTVLAAPERSPLATREMFYTALTRAKVRVRVVGSPEA 613 Query: 586 LSAAIATRTERRSGLAALF 604 ++AA++ R +GLA Sbjct: 614 VAAAVSRPLARATGLAERL 632 >UniRef50_UPI0000E0F58B exodeoxyribonuclease V, alpha subunit n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F58B Length = 674 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 154/608 (25%), Positives = 274/608 (45%), Gaps = 48/608 (7%) Query: 36 TLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIG----------------ELQ 79 +A LL G+ + L+ L NN+ + + ++ E++ Sbjct: 56 FVAMLLLQQAQCAGNSYIDLTSLVNNQFFEKMDSDNPTQYATENGQSLTGAQCTSYEEIE 115 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF-NEVNHAIEVDEALLA 138 + L+A + +++ RL+ +++ E+ +++ ++ + E + Sbjct: 116 MSIQALIAHPIHGQL-----LVIDKQRLFSRKVYEYEQFISQQISQKITTSNERLNPNVK 170 Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 ++L+P + WQ +A+ AL + +I+GGPGTGKT TV + L + AD +R Sbjct: 171 TVFEQLYPSPIKNIWQAIASVTALNQSFFIINGGPGTGKTYTVIRTLLLHLAQAD-KRLN 229 Query: 199 IRLAAPTGKAAARLTESLGKALRQLP---LTDEQKKRIPEDASTLHRLLGAQPGSQRLRH 255 L APTGKAA R++ES+ ++ L + E IP AST+HRLLG ++ Sbjct: 230 FALCAPTGKAAQRMSESIVNEVQHLSRQGIAPELLANIPTTASTVHRLLGLGYHRNYAKY 289 Query: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 H GNPL DVLV+DEASM+D +M R++ A+ R++ +GD QL SVE+G +L D+ Sbjct: 290 HQGNPLPHDVLVIDEASMLDTRLMFRILSAVKPSTRILLIGDTAQLPSVESGNILKDVMP 349 Query: 316 YANAGFTAERARQ---------LSRLTGTHVPAGTGTEAASLRDSLC-----------LL 355 F++ + LT G ++ +L L Sbjct: 350 VHVNQFSSTMMQWVESVSSELSSQYLTSCAEIPGENSQWNDYAATLLTNMRSTHHVNELA 409 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG- 414 Y+ + I L I R ++ K T + + + + Sbjct: 410 NAIYQNNVNGAITALDNVITRWSTSSPKLSNLASSTLLYRPDEVDEQQVKQNFNALIKTM 469 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 Y L + EP + ++++L +R G+ G+N+ I+Q + Sbjct: 470 SDAYFKPLLSMLEPTDALALLRQFRILSPIRHSAMGIEGINKAIDQLLDPSTNKSADSDR 529 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 Y G+ ++I +ND LG++NGD G+ L + Q + D ++ P R+ + ++ Sbjct: 530 HLYHGKAILITQNDMQLGIYNGDSGVILRNEAQQLTAYIDRGDQAPLAISPYRIAKFQSA 589 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +AMT+HK+QGSEFD ++LPS +++EL+YT +TRA++ +++ AI T Sbjct: 590 YAMTIHKTQGSEFDQVLIVLPSGLIHPMSKELLYTGITRAKQYVAVTGAAPDFVKAIYTT 649 Query: 594 TERRSGLA 601 R + + Sbjct: 650 HARHTNIV 657 >UniRef50_A4S3Z4 Predicted protein (Fragment) n=37 Tax=Eukaryota RepID=A4S3Z4_OSTLU Length = 772 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 166/643 (25%), Positives = 260/643 (40%), Gaps = 104/643 (16%) Query: 10 AVEHKQLRPLDVQFALTVAGDEHPAVTLAAA---LLSHDA-GEGHVCLPLSRLENNEASH 65 AV +D A + + L AA +LS A GH LP S++ + + Sbjct: 186 AVRGATFHRVD-ALASRLGKAPNDPARLGAAIIEVLSAAAVSSGHAYLPWSKIVDGVRAL 244 Query: 66 PLLATCVSEIGELQNWEECLLASQAV-------SRGDEPTPMILCGD----RLYLNRMWC 114 +T E+ +Q + + + + + + GD LY + M Sbjct: 245 LGQSTITDEL-SMQAAADAMRTKGEIRVQRLPTASTAAGSIEVFEGDWSTAALYTSAMHS 303 Query: 115 NERTVA-RFFNEVNHA-IEVDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVI 169 E VA N + I+VD A + + L+ QK +AL +S++ Sbjct: 304 AEVAVASDVINRIRRPKIKVDSARVERWLEAAAQKEGWRTLSETQKDFVRLALESPVSIL 363 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 +GGPGTGKT ++ M + + APTG+AA RL E T + Sbjct: 364 TGGPGTGKTFATHVIVRLWRAM----GKSVVMCAPTGRAAQRLMEIT---------TAGR 410 Query: 230 KKRIPEDASTLHRLLGAQPGS-----------------QRLRHHAGNPLHLDVLVVDEAS 272 P +ST+HRLL + R A NP+ DV+VVDE+S Sbjct: 411 DIANPVTSSTIHRLLEFKAADALEGMEDDGPMQALSYKGRFSRDAKNPIQADVVVVDESS 470 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DLP+ + L+ A+P A+V+F+GD DQL SV G++L D+ A N Sbjct: 471 MLDLPLAAALLAAVPPSAQVVFVGDADQLPSVGPGSLLRDLLAARNVPS----------- 519 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 L +R + SGI + A AIN G + D Sbjct: 520 --------------------IALTDIFRQAAASGIVRAAHAINSGAFLPL---------D 550 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 I ++ ++++ E A LD + + P + Q+L +R G Sbjct: 551 IREQRHDPDCLWVSLPSETNASVEAVLDHILSDILPARGFSP-KDLQVLSPMRRGVASTG 609 Query: 453 GLNERIEQFMQQKRKIHRH-------PHSRWYEGRPVMIARNDSALGLFNGDIGIA--LD 503 LN ++ + + + + EG V+ RND +FNGD+G+ +D Sbjct: 610 SLNNWLQTSLNPSCESKKEVAVGGFSGDVTFREGDRVLQQRNDYDKEVFNGDLGVIQRID 669 Query: 504 RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 GT + D S L + +AMT+HK+QGSE+ L++ + P++ R Sbjct: 670 TKAGTAIVSFGADFKEVSYTKGELRDLIPAYAMTIHKAQGSEYRAVVLVMTNAHKPLLRR 729 Query: 564 ELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAALF 604 EL+YT VTRA+ L + A L+AAI T + R +GL Sbjct: 730 ELLYTGVTRAKELLVIVAPRTALAAAIDTAGKDRRCTGLVDRL 772 >UniRef50_D1VRZ7 Helicase, RecD/TraA family n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRZ7_9FIRM Length = 727 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 156/625 (24%), Positives = 247/625 (39%), Gaps = 104/625 (16%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEA 63 L+E + + D Q AL+ + + L LS GH LPL L N Sbjct: 181 LIEDIGGIGFKKAD-QIALSFGIKKDSEERIIQGLKYVLSRANLNGHTYLPLDILVKNAN 239 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARF 122 ++ I +L+N L S+ + D L Y E +A Sbjct: 240 KLLGIS-----IDDLENSLRGLSFSKDFYVDK------VGNDYLCYYAPYLRAENYIAGK 288 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSDEI-NWQKVAAAVALTRRISVISGGPGTGKTTTV 181 NE+N D + + + + ++ + Q+ A +L + +I+GGP T Sbjct: 289 LNEINITFHEDLDVNKKIEEIEKTRNIKLAHGQRQAIKKSLDHGVFLITGGP----GTGK 344 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 L ALI + + +I+LAAPTG+AA R+ ES G DA T+H Sbjct: 345 TTALKALIDVYEFMGKKIKLAAPTGRAAKRMKESTG-----------------HDALTIH 387 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 +LL + ++ L DVL+VDE SM+D+ +M L+ +L R+I +GD DQL Sbjct: 388 KLLEINFTDSKDIYYDPIDLECDVLIVDEMSMVDIMLMETLLRSLEKGVRLILVGDPDQL 447 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV AG VL DI S L + +R Sbjct: 448 PSVGAGNVLRDIIDSKLF-------------------------------SQVNLVEIFRQ 476 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 +S I + A IN+G++ + DF I ++ G + I DL Sbjct: 477 KEESMIIKNAHLINKGERPILNN---NDFFLISEQGENKGLEIIK-------------DL 520 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 L R I + ++ Q+L +++G G LN+ +++ + + ++ + Sbjct: 521 LSKRLGEYYGIDS-SDIQVLSPMKKGLLGTFNLNKVLQELLNKSQEKIEVFGKTFKLYDR 579 Query: 482 VMIARNDSAL--------------GLFNGDIGIALDRGQGTRVW-FAMPDGNIKSVQPSR 526 V+ +N+ L G+FNGD+G ++ D P Sbjct: 580 VIQMKNNYDLEAIIENDFYKETTKGVFNGDLGYISSIDVEEKILEVTFDDAKKVKYLPED 639 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L + E ++AMT+HKSQGSEF + L ++TR L+YTA+TRA + + L L Sbjct: 640 LDQLELSYAMTIHKSQGSEFPVVVIPLFWAPPMLLTRNLIYTAITRASKLVVLVGKYEYL 699 Query: 587 SAAIATRTE--RRSGLA-ALFSSRE 608 I R S L L + E Sbjct: 700 MKMIENNKTRIRYSNLKNKLIEANE 724 >UniRef50_Q12LP3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LP3_SHEDO Length = 767 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 186/421 (44%), Positives = 250/421 (59%), Gaps = 36/421 (8%) Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 +L L IPE+ASTLHRLLG P S + RH NPL LD+LVVDEASM+DL Sbjct: 347 SSSLLALKQLIASLSLIPEEASTLHRLLGVIPNSHKFRHDEHNPLRLDLLVVDEASMVDL 406 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG----------FTAERA 326 PMM +L+ ALP AR+I LGD+DQLASVEAGAVL DICA A ++ E+A Sbjct: 407 PMMHKLLSALPKDARLILLGDQDQLASVEAGAVLADICAGLKAPASSAAQWQMRYSHEQA 466 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 L LTG + +A L DSLC+L S+RF D+GIG LAAA+N D A++ V+ Sbjct: 467 LLLEALTGEKLTRYIHPQA-RLGDSLCILFHSHRFKGDAGIGLLAAAVNHADIKAIRQVW 525 Query: 387 QQDFTDIEKRLLQ----SGEDYIAMLEEALAGYGRYLDLLQ------------ARAEPDL 430 QQ ++ Q S + A+L +++ YG YL L+ A P Sbjct: 526 QQQHQELNWFEHQADSNSAQGKDALLALSVSAYGDYLSLIADNKRQFEITDASALHSPKT 585 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSA 490 II +FN+Y++LCA+R G FGV G+N + Q ++Q++ I P +Y GRP++IA ND Sbjct: 586 IIDSFNQYRILCAMRAGEFGVDGINAALTQALKQRKLID--PKQEFYLGRPIIIASNDYN 643 Query: 491 LGLFNGDIGIAL-DRGQGTRVW--FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 LGLFNGDIG+ L D+ Q TR+ F DG++ VQP+RLP H+T +AMTVHKSQGSEF Sbjct: 644 LGLFNGDIGLILQDKDQPTRLMAHFIKADGSVLKVQPARLPSHDTCYAMTVHKSQGSEFA 703 Query: 548 HAALILPSQRT----PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAAL 603 + +LP + + ++T+EL+YTA+TRA+ + + + A T R SGLA Sbjct: 704 KVSFVLPPKPSTAQWQLLTKELLYTAITRAKAQFYCLGSQPVFERASRQVTLRASGLARR 763 Query: 604 F 604 Sbjct: 764 L 764 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 79/247 (31%), Positives = 115/247 (46%), Gaps = 31/247 (12%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG--------DEHPAVTLAAALLSHDAGEGHVCL 53 L+++L E + L PLD FAL++ E L ALLS H CL Sbjct: 33 SLRERLKYWQELRLLTPLDRHFALSLCDIEGLDNHSSEAELFMLICALLSRQLSNQHSCL 92 Query: 54 PLSRLENNEASHPLLATCVSEIG------ELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 LS++ + ++P++ C L E L AV + + TP+IL L Sbjct: 93 VLSQI---DLANPMMEECYRAPASCSINLSLTELEHQLSQFSAVGQAGDNTPLILDTGCL 149 Query: 108 YLNRMWCNERTVARFFNEVNHAIEVDEA---------LLAQTLDKLFPVSDE--INWQKV 156 YLN+ E VA N + + + + Q LD LFP ++ I+WQKV Sbjct: 150 YLNKYHFFETHVAHKLNRLAQTELIATSNAFDAGTLNQVRQQLDCLFPAAENAQIDWQKV 209 Query: 157 AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESL 216 A A ALT+ ++VI+GGPGT + L+ + I+L APTGKAAARL+ES+ Sbjct: 210 ATATALTKALAVITGGPGT---GKTTTVTKLLLLLQTQSAMNIKLVAPTGKAAARLSESI 266 Query: 217 GKALRQL 223 + +L Sbjct: 267 KDSKAKL 273 >UniRef50_Q04B55 ATP-dependent DNA helicase, RecD/TraA family n=27 Tax=Lactobacillus RepID=Q04B55_LACDB Length = 796 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 145/600 (24%), Positives = 246/600 (41%), Gaps = 93/600 (15%) Query: 31 EHPAVTLAAALLSHDAGEGHVC-LPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQ 89 +H + AL S + +G + + L L ++ L + EL N ++ Sbjct: 200 DHLGIGFGIALDSLERADGSILAVLLQALTMEGETYLELEELLPAAKELTN-INFDRLAE 258 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD 149 AV+ + +++ R L + E + ++ + + + LD+ ++ Sbjct: 259 AVNDLQDKKKVVVEEGRASLLAPFQVESEIVTDLEDLLAKGK-EADYREKDLDQAIKRAE 317 Query: 150 E------INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 QK A A+T +S+++GGPG+GKTT + +L L +AD + A Sbjct: 318 RKLGISYDPEQKQAIKNAVTSPVSILTGGPGSGKTTIIDGILLVLKDLADMDEEEAEEAI 377 Query: 204 ----PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGN 259 PTG+AA R+ E G A T+HRLLG G N Sbjct: 378 LLAAPTGRAAKRMEEVTG-----------------YPAKTIHRLLGL--GIDNSEEMELN 418 Query: 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA 319 L ++L+VDE SM+D+ + +L+ A+ + ++F+GD+DQL SV AG V D+ Sbjct: 419 DLEGEILIVDEMSMVDIYLFEKLLSAISNVHHLVFVGDKDQLPSVGAGKVFADLIEADFI 478 Query: 320 GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK 379 C LQ +R DS I LA A+N G Sbjct: 479 P-------------------------------TCQLQVVHRQKDDSTIIPLAHAVNEGAN 507 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 AV ++ I R + + AL A ++ Q Sbjct: 508 PAVLLQKTASYSFIPCRPHAVPSAVEQITQAALKSGF-----------------AADDIQ 550 Query: 440 LLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR---WYEGRPVMIARNDSALGLFNG 496 +L A+ G G+ LN+ +++ + ++ + + + V+ +ND G++NG Sbjct: 551 VLGAMYRGDGGINSLNDTLQRVINPEKGNDKAVEAHGENFRLHDRVLQLQNDPERGIYNG 610 Query: 497 DIGIAL--------DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 +IG + D ++ DGN + + L +A+T+HKSQGSEF Sbjct: 611 EIGKVVAVDPEMLEDEDDEVKLLVNF-DGNEVAYTQADLNNLTRAYAITIHKSQGSEFPL 669 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAALFSSR 607 L L Q ++ R L+YTA+TRA ++L + +E+ + A+ + ERR+ L L R Sbjct: 670 VILCLTMQNYIMLKRNLLYTAITRASQKLVMVGEEQAFAQAMRVKGNERRTNLVWLLKDR 729 >UniRef50_C7IID4 Exonuclease V subunit alpha n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IID4_9CLOT Length = 819 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 139/639 (21%), Positives = 229/639 (35%), Gaps = 121/639 (18%) Query: 16 LRPLDVQFALTVAGDEHPAVTLAAALLS---HDAGEGHVCLPLSRLENNEASHPLLATCV 72 R D + A + D H + AAL S EGH L +L + Sbjct: 251 FRTCD-EIAKKLGIDSHSIFRMEAALKSVLETAETEGHCYLYRQQLLQATSKALSDNADK 309 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDR---LYLNRMWCNERTVARFFNEVNHA 129 EL + ++ + + DR +Y M E A + Sbjct: 310 ISEDELDEAYKRMIKTGLLVNITYTE----NEDRYEAVYTRDMHKLEYETALAIKNI--- 362 Query: 130 IEVDEALLAQTLDKLFPVSDEI------NWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 + + +DKL +E+ + QK + + +++G G+GKTTTV Sbjct: 363 VRCQPDISVAHVDKLIAEFEELKGFELEDMQKESVRAVFETNMLILTGSAGSGKTTTVEC 422 Query: 184 LLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 ++ L ++ + + LAAPTGKAA RLTE G +A T+HR Sbjct: 423 MIYVLQRVFENRQEMSFMLAAPTGKAAKRLTEITG-----------------FEAMTIHR 465 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LL ++ + GN L D++V+DE+SM+ + + L A+ V+ +GD QL Sbjct: 466 LLQFSYENKGFFYRQGNELPYDLIVIDESSMLSIDLAHALFTAISPGTTVVMIGDTQQLP 525 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SV AG VL D+ L R Sbjct: 526 SVGAGNVLDDMIKSGVIP-------------------------------TVKLNVIKRQA 554 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 SGI A I G+ + + F E + + L + Y +D Sbjct: 555 DGSGIISNANRIINGEMPEIINQNKDFFVIEEDDKYRVVKKTQEALNRLMTAYNHTID-- 612 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEG 479 + Q++C + G LN+ I++ + ++ + +S + EG Sbjct: 613 --------------DIQIICPQKSSEIGTYELNKAIQEMVNPAAENKQEIKRGNSVFREG 658 Query: 480 RPVMIARNDSAL------------------GLFNGDIGIALDRGQGTRVWFAMPDGN--- 518 V+ N+ G+FNGDIG ++ V D N Sbjct: 659 DKVIHLSNNYETPHYRREPDTGRYFAQESCGIFNGDIGRIIEISNIKEVEAEDEDANTPE 718 Query: 519 ----------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 I + L E + + +TVHK QGS+ + A ++ + ++ R L YT Sbjct: 719 KKVAVQYDDFIIIYHINELEEIDLAYCLTVHKMQGSQCEAAIILCHMRNYVMLNRNLGYT 778 Query: 569 AVTRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 AVTRA++ + ++ + ++ ER S L L Sbjct: 779 AVTRAKKMACIIGQKKAIKLMVSNVKINERNSMLCDLLK 817 >UniRef50_A9WGW5 Helicase, RecD/TraA family n=4 Tax=Chloroflexi (class) RepID=A9WGW5_CHLAA Length = 725 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 160/621 (25%), Positives = 239/621 (38%), Gaps = 104/621 (16%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNE 62 L + V+ R D + L +A D+ + AA L L+ + EGH LP L Sbjct: 183 LADEVDGVGFRTADAIAAGLGIARDDPQRI--AAGLRYTLAQASDEGHCYLPAGELTRRA 240 Query: 63 ASHPLLATC------VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 AS + T + Q W + ++A R +YL + E Sbjct: 241 ASLLSVTTAAVTDVFTQMVATNQLWRDPIVADPDPDRYP-----------IYLPPLAFAE 289 Query: 117 RTVARFFNE-VNHAIEVDEALLAQTLDKLFPVSDE------INWQKVAAAVALTRRISVI 169 VA + + + +F E + Q+ A ALT + ++ Sbjct: 290 IGVANAIRRLIQQRSSLAARYAPSRWNLVFAHLAERRGINLSDQQRRAVQTALTTPVMLL 349 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 +GGPG T L AL+ + R LAAPTG+AA RL+E+ G Sbjct: 350 TGGPG----TGKTTSLRALVMLLQARGYRPLLAAPTGRAARRLSEATG------------ 393 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 +A T+HRLL P R +A PL D+LV+DEASM+D+ + ++L+ A+P Sbjct: 394 -----LEARTIHRLLEYGPDG-TFRRNAEYPLDCDLLVIDEASMLDIVLANQLLKAIPAG 447 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 A ++ +GD DQL SV G VLGD+ Sbjct: 448 AHLVIVGDADQLPSVGPGRVLGDVIESGVVPR---------------------------- 479 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 L +R + SGI A IN G DF + Sbjct: 480 ---VHLDAIFRQAAGSGIAANARRINEGHLPEWGA--HDDFYFFAAATPERCAAL----- 529 Query: 410 EALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK-- 467 ++L+ R + Q+L +G GVA LN ++ + R Sbjct: 530 --------TVELVVERIPRRFGFDPRRDIQVLSPTHKGVAGVAALNAALQAALNPPRPGV 581 Query: 468 -IHRHPHSRWYEGRPVMIARNDSALGLFNGDIG-IALDRGQGTRVWFAMPDGNIKSVQPS 525 + + + G V+ RND ++NGD+G I G V DG Sbjct: 582 AEYHSGATIFRVGDRVIQQRNDYDRDVYNGDVGEIVAVDPTGPTVMVRFEDGRTIRYNGL 641 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 L + +A++VHKSQGSE+ L L P++ R L+YTAVTRAR+ + + D R Sbjct: 642 DLDDLTLAYALSVHKSQGSEYPVVVLPLLLSHQPLLQRNLIYTAVTRARQLVVIVGDRRA 701 Query: 586 LSAAI--ATRTERRSGLAALF 604 + AI A R +GL+ Sbjct: 702 VEVAIAAANVERRYTGLSIRL 722 >UniRef50_Q057F4 Exodeoxyribonuclease V, a chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F4_BUCCC Length = 593 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 161/581 (27%), Positives = 289/581 (49%), Gaps = 31/581 (5%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN--WEECLL 86 + P V L L + A GH C+P + + + I N W ++ Sbjct: 36 SNYSPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVI 95 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP 146 +S S G + TP+++ +YL + W +E + + + ++ + + K Sbjct: 96 SSMLCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCS 155 Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 + N QK A AL + + GGPGTGKT +A L ++ ++ +I+L APTG Sbjct: 156 NYIDKN-QKNAVKKALIHNLFFLLGGPGTGKTNIIAYL-ILILIKISKKKIKIQLTAPTG 213 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR-HHAGNPLHLDV 265 KA +LT+S+ K L++ + +KK IP++ TLH+L Q + + + +D+ Sbjct: 214 KAVNKLTQSIYKILKKKNIQKNEKKMIPKEGITLHKLFKIQKETNKNNAKYIKRKKKIDI 273 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAER 325 L++DE+SMI L +M ++ + ++IF+GD QL SVE G++L Sbjct: 274 LIIDESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSIL--------------- 318 Query: 326 ARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 + + +L+K+YRF +SGI L + + + + Sbjct: 319 ----------KKICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKI 368 Query: 386 FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR 445 +++ + DI + L + DY+ ML++ Y +Y + + + P II FN+Y++LC + Sbjct: 369 YKKKYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNKYRILCIIN 428 Query: 446 EGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 +G FG +N+ ++ + + + WY G+P++I +N+ L L NGDIGI L + Sbjct: 429 KGIFGTKKINQYLDNYFIKINNKKKKKE-FWYHGKPIIIKKNNIFLKLMNGDIGICLYKK 487 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 + +++F + G IK P L ++T W+ T+HKSQGSEF +I+P+ + ++EL Sbjct: 488 KKKKIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKEL 547 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 YTA++RA++++++YA+++IL+ I ER SGL Sbjct: 548 FYTAISRAQKKVTIYANKKILNKIINNNKERYSGLKKKIEE 588 >UniRef50_C7H0P7 Helicase, RecD/TraA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0P7_9FIRM Length = 741 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 143/628 (22%), Positives = 239/628 (38%), Gaps = 108/628 (17%) Query: 7 LLEAVEHKQLRPLDVQFA-LTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEAS 64 L++ ++ +D A L + D V + +AG GH LP L + A+ Sbjct: 188 LIKDIDGIGFLKVDKTVANLGLKYDSEKRVRAGILHIIENAGNLGHCYLPQEELVKSAAA 247 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMI---LCGDRLYLNRMWCNERTVAR 121 L ++ ++ + I G R+Y M+ E +A Sbjct: 248 -------------LLGVDDDIVTENLLPLAATNDIFIEEGSEGRRIYPFNMYTFEENLAV 294 Query: 122 FFNEVNHAIEVDEALLAQTLDKLFPVSDEIN---WQKVAAAVALTRRISVISGGPGTGKT 178 + ++++ A D + L V+ I Q+ A + + IS+I+GGP Sbjct: 295 YISKLSKAETDDLRVDINNLIDEAEVTKGIRLSPMQRKAVSACMEESISIITGGP----G 350 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T ++ ++ + + +AAPTG+AA R+TE+ +A Sbjct: 351 TGKTTIIYTILSILKSAGKNVEIAAPTGRAAMRITETSS-----------------FEAK 393 Query: 239 TLHRLLGA--QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 T+HRLL + ++ NPL D L++DEASM+D+ + L A+ R+I +G Sbjct: 394 TIHRLLEYGGTESGKGFARNSKNPLECDALIIDEASMVDVILAYSLFKAIKPGTRIIVVG 453 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV AG VL D+ ++ L Sbjct: 454 DSDQLPSVGAGNVLADLIKSEVI-------------------------------NVIRLT 482 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 + +R S I Q A AIN T DF +E+ + + I L + A Sbjct: 483 EIFRQNEKSMIVQNAHAINHRKFPICNT-EDGDFFFLERSENPAIINVIMNLCKNSAKRN 541 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPH 473 Y ++Q+LC ++G G LN ++ + K + Sbjct: 542 GY--------------DPMQDFQVLCIQKKGECGTENLNSILQNMLNPKIDDNSEINYFG 587 Query: 474 SRWYEGRPVMIARNDSAL------------GLFNGDIG-IALDRGQGTRVWFAMPDGNIK 520 S + G VM +N+ L G+FNG+IG I + G + Sbjct: 588 SVFRIGDKVMHIKNNYDLKWHSNRTGERGRGIFNGEIGNIVFVSKADDVLAVEYTGGRVA 647 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 E + +A+TVHKSQG+EF + + + T+ L+YTAVTRA+ ++ L Sbjct: 648 RYSKPEFKEIQPAYAITVHKSQGNEFPVVIMPVVGAAPMLATKNLLYTAVTRAKDKVVLV 707 Query: 581 ADERILSAAIATR--TERRSGLAALFSS 606 + + + +R S LA + Sbjct: 708 GKKTNIFYMLKNNFEEKRYSALAERLKN 735 >UniRef50_P96919 Exodeoxyribonuclease V alpha chain n=27 Tax=Actinomycetales RepID=EX5A_MYCTU Length = 575 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 209/594 (35%), Positives = 300/594 (50%), Gaps = 58/594 (9%) Query: 20 DVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIG 76 DV A + AG+ V LA A+ G VC+ L + L Sbjct: 29 DVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDLP------WP 82 Query: 77 ELQNWEECLLASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEA 135 + +W + AS ++ +P + L DRL YL+R W E V + + Sbjct: 83 DPADWLAAVRASPLLA---DPPVLHLYDDRLLYLDRYWREEEQVCADLLALLTS---RRP 136 Query: 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-- 193 L +LFP + Q+ AA +AL++ ++V++GGPGTGKTTTVA+LLA + + A+ Sbjct: 137 AGVPDLRRLFPTG--FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALVAEQAELA 194 Query: 194 -GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 R RI LAAPTGKAAARL E++ + + +L TD + A TLHRLLGA+PG+ R Sbjct: 195 GEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRAR-LGDLHAVTLHRLLGAKPGA-R 252 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 R N L +V+VVDE SM+ L +M+RL +A+ AR+I +GD DQLASVEAGAVL D Sbjct: 253 FRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVEAGAVLAD 312 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 + + + L+ S+RFG IG LA Sbjct: 313 LVDGFSV---------------------------RDDALVAQLRTSHRFGK--VIGTLAE 343 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 AI GD AV + + IE ED L L + L D+ + Sbjct: 344 AIRAGDGDAVLGLLRSGEERIE---FVDDEDPAPRLRAVLVPHALRLREAALLGASDVAL 400 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 +E++LLCA R+GP GV N R++ ++ + + P + WY GRP+++ ND L Sbjct: 401 ATLDEHRLLCAHRDGPTGVLHWNRRVQAWL--AEETGQPPWTPWYAGRPLLVTANDYGLR 458 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 ++NGD G+ L G R + G + V RL + ET AMT+HKSQGS+ D ++ Sbjct: 459 VYNGDTGVVLAGPTGLRAVISGASGPL-DVATGRLGDVETMHAMTIHKSQGSQVDEVTVL 517 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 +P + + ++TREL+YTAVTRA+R++ + E + AAIA R R SGL S Sbjct: 518 MPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRLQS 571 >UniRef50_C2KY21 Possible exodeoxyribonuclease V alpha subunit n=1 Tax=Oribacterium sinus F0268 RepID=C2KY21_9FIRM Length = 759 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 141/595 (23%), Positives = 229/595 (38%), Gaps = 118/595 (19%) Query: 48 EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 GH LP S L+ + E L+ + + G+ + Sbjct: 230 HGHCYLPFSILKREAERILEMPLEDLEEQLLEL--------------QLQGKVKVKGENV 275 Query: 108 YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEIN-----WQKVAAAVAL 162 Y + E VA ++N +E +EA + + + D Q+ A ++A Sbjct: 276 YRASTYYREMRVASRLLQLN--VEEEEAHVDSWEKAIDKLLDREKITLDPLQRKAVSLAA 333 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 + + VI+GGPG T + ++Q+ G+ I LAAPTG+AA R+ E+ Sbjct: 334 SSGVLVITGGPG----TGKTTTIKTILQLFTGQGKSIALAAPTGRAAKRMGEAT------ 383 Query: 223 LPLTDEQKKRIPEDASTLHRLLGA---------QPGSQRLRHHAGNPLHLDVLVVDEASM 273 A TLHRLL + + NPL DVL+VDE SM Sbjct: 384 -----------DYPAKTLHRLLEYMGREDQEQEDRDFSLFQRNEENPLEYDVLIVDEMSM 432 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 +DL +M L+ A+P R+I +GD +QL SV AG VL DI A Sbjct: 433 VDLYLMDALLRAIPVGCRLILVGDSEQLPSVGAGNVLKDIIASQ---------------- 476 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 L+K +R +S I A IN+G + + +DF I Sbjct: 477 ---------------CMKTISLKKIFRQAMESDIVVNAHKINQGIEPDLGKK-SKDFFFI 520 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 + + + IA+L ++ + L + Q++ ++G GV Sbjct: 521 RGQEPKQILENIAIL-------------MKEKLPKYLSTDPLS-IQVMSPQKKGLLGVEN 566 Query: 454 LNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSAL----------------GLF 494 LN +++ + + + + + G VM +ND L G+F Sbjct: 567 LNRFLQERLNPPGKNKPEYEGSGNIFRLGDKVMQIKNDYQLAWEIPGNFNLPIESGEGVF 626 Query: 495 NGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 NGDIG + + + L E +A+T+HKSQGSE+ L + Sbjct: 627 NGDIGKITEINAYQKTVTVFFEERKVVYSFQDLENLELAYAITIHKSQGSEYPAVLLPMY 686 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSSR 607 +++R ++YTA+TRA+ + L ++ + E R SGLA + Sbjct: 687 PGPKMLMSRNILYTAITRAKSCVCLLGQPKVFLEMLHNEQELKRYSGLAQQLQTI 741 >UniRef50_A7VSJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSJ6_9CLOT Length = 738 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 140/594 (23%), Positives = 233/594 (39%), Gaps = 109/594 (18%) Query: 38 AAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP 97 + +L H+ GH CLP RL AS+ + +++ + ++ L Sbjct: 219 ISYVLLHNMNNGHTCLPKDRLLPAAASYLEIEEELADEILYEMIQDLTLE---------- 268 Query: 98 TPMILCGDR--LYLNRMWCNERTVA-RFFNEVNHAIE----VDEALLAQTLDKLFPVSDE 150 + L R ++ +M E +A R +N + V+EA+ A + + Sbjct: 269 --LDLINGREFIFTPKMHQCEIYIAARMLMMLNFPAQSITGVEEAVAAIEAQSGIQYAQQ 326 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 QK A AL++ + +++GGPG T L ++ + + R+ LAAPTG+AA Sbjct: 327 ---QKQAITEALSKGMLILTGGPG----TGKTTTLNGILNILEQNGERVYLAAPTGRAAQ 379 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR---LRHHAGNPLHLDVLV 267 R++E + +A T+HRLL + Q + N L D L+ Sbjct: 380 RMSEVTRR-----------------EAKTIHRLLEVEWDPQDRPVFTRNEKNMLDCDTLI 422 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DE SM+D + ++ ALP R+I +GD DQL SV G VLGD+ A Sbjct: 423 LDELSMVDNALFEGVLRALPLGCRLILVGDTDQLPSVGPGNVLGDLIASGLLP------- 475 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 + L + +R S I A I +G + Sbjct: 476 ------------------------VVQLTEIFRQSMQSLIVTNAHQIVQGQMPELGRK-D 510 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREG 447 DF + + S D I +DL R + Q+L R+G Sbjct: 511 GDFFFLPNQDPVSIRDTI-------------VDLCLRRLPASYGYSPVFDIQVLSPGRKG 557 Query: 448 PFGVAGLNERIEQFMQQKRKIHRH----PHSRWYEGRPVMIARNDSAL-----------G 492 G LN+ ++ + K + EG VM +N+ + G Sbjct: 558 ELGTIALNQSLQSAVNPPEKGIKKAITVNGVLLREGDKVMQVKNNYNIPWEKDDGTLGEG 617 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 ++NGD+GI L+ + D + + + + E +A+TVHKSQGSEF+ + Sbjct: 618 VYNGDVGILLEVDRTGSAAVRYDD-KVAAYDLESIGDLELAYAVTVHKSQGSEFEAVVMP 676 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI--ATRTERRSGLAALF 604 + + R L+YT VTRA+ L + + + + +T+R +GL Sbjct: 677 MYPGPRQLYYRNLLYTGVTRAKNLLVMVGTPKTVERMVENNRKTKRYTGLCYFL 730 >UniRef50_B8I4C3 Exonuclease V subunit alpha n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I4C3_CLOCE Length = 813 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 142/635 (22%), Positives = 234/635 (36%), Gaps = 119/635 (18%) Query: 24 ALTVAGDEHPAVTLAAALLS---HDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 A + D H L AAL S +G+ L ++L A EL++ Sbjct: 239 ARKLGIDPHSVFRLEAALKSVLQTAEADGNCYLLKAKLLEMTAKALSNPDVTVTTDELED 298 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE------VDE 134 +L S ++ + + +Y M+ E A E+ VD+ Sbjct: 299 AYNRMLKSGSLVNIT-FSEDQQSFEAVYTKEMYKIEYETALAIKEIARCQPDVPMFSVDK 357 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + + F + + QK A + +++G G+GKTTTV ++ L + + Sbjct: 358 LIEEFEAMRGFNLE---SMQKEAVKAVFNTNMLILTGSAGSGKTTTVECMIYVLQRYFEK 414 Query: 195 -ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 E LAAPTGKAA RLTE G +A TLHRLL ++ Sbjct: 415 QEEMSFMLAAPTGKAAKRLTEITG-----------------FEAMTLHRLLQFSYENKGF 457 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + GN L D++VVDE+SM+ + + L A+ V+ +GD Q+ SV AG VL D+ Sbjct: 458 FYRQGNELPYDLIVVDESSMLSIDLAHALFTAISPGTTVVLIGDTQQIPSVGAGNVLDDM 517 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 L R SGI A Sbjct: 518 IKSGVIP-------------------------------TVKLNVIKRQEDGSGIIFNANR 546 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 I G+ + + F E + + + L + GY +D Sbjct: 547 IINGEMPEIINANKDFFIVEEDDKNRVIKRTLEALNRLMTGYNYTID------------- 593 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSA 490 + Q++C + G +N+ I++ + + + +S + +G V+ N+ Sbjct: 594 ---DVQVICPQKTSELGTYEMNKAIQEMVNPAAAGKAEVKRGNSVFRQGDKVIHLNNNYE 650 Query: 491 L------------------GLFNGDIGIALDRGQGTRVWFAMPDGN-------------- 518 G+FNGDIG ++ + + DG Sbjct: 651 ATHYHKDAKTGRYIADEGSGVFNGDIGRIIEISKIGEIDQESEDGEAAGDNNTEEKVAVQ 710 Query: 519 ----IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 I Q + L E + +++TVHK QGS+ + A + + ++ R L YTAVTRA+ Sbjct: 711 YDEFIIIYQINELEEIDLAYSLTVHKMQGSQCEAAIFLCHLRNYIMLNRNLGYTAVTRAK 770 Query: 575 RRLSLYADERILSAAIAT--RTERRSGLAALFSSR 607 R + + +S + T+R + LA L S + Sbjct: 771 RMACIIGQRKAISVMVQNVKVTQRNTMLADLLSLK 805 >UniRef50_Q6MFB5 Putative exodeoxyribonuclease V alpha chain recD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB5_PARUW Length = 622 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 276/633 (43%), Gaps = 80/633 (12%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDE--HPAVTLAAALLSHDAGEGHVCLPL-------- 55 + + + QL L+ L + D+ + + L L A EGH+C+ + Sbjct: 36 LVNQLLSKNQLSYLNYLLTLEIIKDQWINQNLVLFICHLLMAAQEGHLCVEIRNQTLFPT 95 Query: 56 -SRLENNEASHPLLATCVSEIGE--LQNWEECLLASQAVSRGDEP-----TPMILCGDRL 107 +L NEA+ PL + + LQ + + E TP+ + Sbjct: 96 VKQLWTNEAAAPLSNEELENLTHSILQGSQNIPVNFVTAMDSLENSVYPNTPICMHKGNF 155 Query: 108 YLNRMWCNERTVARFFN---EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTR 164 YL + W E + N + + +E++ +L Q L++ + Q A Sbjct: 156 YLQKHWVLETVFLKNLNKHLQTSPTLELNRVVLEQHLNECVLKKKLLLEQAQAILTGCLS 215 Query: 165 RISVISGGPGTGKTTTVAKLLAAL---IQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 +S+I+GGPGTGKT T + + ++ + C+I LAAPTGKAAA L +SL Sbjct: 216 SLSLITGGPGTGKTFTAGRFIQIYWDSLKECQKKNCQIALAAPTGKAAANLQKSLSLVTA 275 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 QL K P A TLH+LLG R R+ +G L D+++VDE+SMID+ MM+ Sbjct: 276 QL------KDFPPLKAKTLHQLLGIN---NRSRNESGIRLAADLIIVDESSMIDVKMMAY 326 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L +AL +R+I LGD+ QL SVEAG++ D+ T +P Sbjct: 327 LFEALKKGSRLILLGDQHQLPSVEAGSLFADLTK-----------------LKTKIPCTE 369 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 +CL + S I LA IN+G ++ + RL S Sbjct: 370 LK--------VCLRTEL------SSIVSLAHYINQGKGQETLSMLNETQIAGISRLNLSP 415 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 + A +E + + L + I++ FN ++L +R+G FGV +N+ I Sbjct: 416 DRREAQ-KEFVQHVMNHFPLSIKVHDNQKILELFNTIRILSPMRKGYFGVDSINQLIWNH 474 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL------DRGQGTRVWFAMP 515 + Q + P++I ND LFNG+ G+ + F Sbjct: 475 VSQIKLSPGWLAI------PIIIVTNDYKQNLFNGETGVLIRKLPLKSITSEDYALFPSK 528 Query: 516 D--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 D N++ + LP++E + ++VHKSQGSEF+ L+LP + + RE+ YT VTRA Sbjct: 529 DEGENMRCLPACLLPKYELAYCLSVHKSQGSEFERVILMLP-EGSECFGREVFYTGVTRA 587 Query: 574 RRRLSLYADERILSAAIATRTERRSGLAALFSS 606 R+ + ++ + + I+ ++ R SG+ Sbjct: 588 RKHIEVWGTDFTIEKTISQQSFRLSGIQTRLEK 620 >UniRef50_C0QIP1 RecD3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIP1_DESAH Length = 733 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 133/523 (25%), Positives = 214/523 (40%), Gaps = 74/523 (14%) Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE-----VNHAIEVDEALLAQTLDKL 144 A+ + +++ D++YL R+ E+ +A +N DEA+ + +L Sbjct: 267 ALGALADAGEVVVEQDQVYLKRLHMAEKGIAERIRAMLCVPINPVDLSDEAITMEVATRL 326 Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 Q + R+ VI+GGP T L+ A+ + R + LAAP Sbjct: 327 --AVKLSQEQIDVVKQVMAHRVVVITGGP----GTGKTTLIRAVCAVLKKLRKTVTLAAP 380 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG+AA RL++ K ASTLHRLL P + + NPL D Sbjct: 381 TGRAARRLSQVTDK-----------------KASTLHRLLLCDPDTGEFARNLSNPLDSD 423 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 V++VDEASM+D +M L+ A+P ++ +I +GD QL SV G VL DI A + Sbjct: 424 VVIVDEASMVDTMLMFNLLLAVPVNSSLILVGDIFQLPSVGPGNVLSDIIASKAVKTFS- 482 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 L + +R S I A AI G+ ++ Sbjct: 483 ------------------------------LTRIFRQAEQSPIVMNAHAIRNGEMPCLEN 512 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 ++ S E +A + E + + +E Q+L + Sbjct: 513 -SSDGLSEFYFIESASPERVVATIVELCSNRIK------------KAFPHVDEIQVLTPM 559 Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR 504 +G G LN++++Q + + + G VM +N+ +FNGDIGI + Sbjct: 560 HKGEAGTINLNQKLQQVLNKAAGGIEARGLTFKTGDKVMHLKNNYQKEVFNGDIGIVHEV 619 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 + DG + L E +A++VHKSQGSE+ + + Q P++ R Sbjct: 620 VKSEGRLSVDYDGRVVDYDLLELDELTLAYAVSVHKSQGSEYSAVVIAMTVQHYPLLQRN 679 Query: 565 LVYTAVTRARRRLSLYADERILSAAI-ATRTE-RRSGLAALFS 605 L+YTA+TR + + + R + A+ RT+ R SGL Sbjct: 680 LLYTAMTRGKNLVIVVGSRRSMEIALHNNRTDCRLSGLCRRLE 722 >UniRef50_Q5WHN2 ATP-dependent exoDNAse alpha subunit n=2 Tax=Bacillus RepID=Q5WHN2_BACSK Length = 761 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 135/627 (21%), Positives = 238/627 (37%), Gaps = 101/627 (16%) Query: 6 QLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHD--AGEGHVCLPLSRLENNE 62 L++ VE R D + A+ + G+ + L + +GH+ L L Sbjct: 197 LLIQDVEGVGFRRADQLGAAIGLTGNHPERLRAGLLYLLRECCMQQGHLYLQEEALITEG 256 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 + + EL+ + +E ++ DR+Y+ ++ E+ +A Sbjct: 257 TALLSSPNVQIDASELE---------AILIEMNEEGMLVREEDRIYMKSLYYAEKGIATN 307 Query: 123 FNEVNH---AIEVDEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGK 177 + E EA + +TL + N QK A A AL + +++GGPGTGK Sbjct: 308 IRRILSQELTQEFTEADIEKTLGHIEDTHAVTYSNTQKEAIATALRSPLLLLTGGPGTGK 367 Query: 178 TTTVAKLLAALIQM---------ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDE 228 TT + ++ A + + ++L APTG+A+ R+ E+ Sbjct: 368 TTVIKGIVEAYAALHGLSLEVAAYKNKSFPLKLTAPTGRASKRMAEAT------------ 415 Query: 229 QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 AST+H LLG + + L ++L+VDE SM+D + ++L A+P Sbjct: 416 -----ELPASTIHSLLGWKGSATGFEKGDHEQLEGELLIVDEMSMVDAWVANQLFKAIPK 470 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 +V+ +GD +QL SV G VL D+ L +P Sbjct: 471 GMQVVLVGDENQLPSVGPGQVLKDL------------------LEADVIPT--------- 503 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 L+ YR S I +LA ++ G + + D + Q + + Sbjct: 504 ----IQLKDIYRQAEGSSIIELAHSMKDGVLPSDFLTKKADRVFFPCQPNQVQQAVWQIC 559 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI 468 E A+ + E Q+L + G G+ LN ++ ++ Sbjct: 560 ENAMKK-----------------GYSAKEIQVLAPMYRGQAGINELNTMLQSLFNPAKEG 602 Query: 469 HR---HPHSRWYEGRPVMIARNDSALGLFNGDIGIAL------DRGQGTRVWFAMPDGNI 519 R + +G V+ N+ G++NGD G + + + DG Sbjct: 603 RRELPFGDVVFRKGDMVLQLVNNPEEGVYNGDRGEIVAVFYAKETTEKKDQLVVSFDGLE 662 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + + + + ++HK+QGSEF + + S ++ R L+YT +TRA++ L L Sbjct: 663 VTYEKKDFSQLTHAYCCSIHKAQGSEFPIVVMPVVSSYMRMLRRNLLYTGITRAKQYLLL 722 Query: 580 YADERILSAAIATRTE-RRSGLAALFS 605 D + + AI E R S L Sbjct: 723 CGDRKTMEQAIKHADEHRHSKLKERLQ 749 >UniRef50_D0LWH5 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWH5_HALO1 Length = 749 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 194/651 (29%), Positives = 269/651 (41%), Gaps = 77/651 (11%) Query: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSE----------IG 76 +AG AV L A A +G LP+ L + LL + +S + Sbjct: 91 LAGRHKRAVALLALATMISARQGSSRLPID-LAPDGYLARLLGSLLSAGEMQLAPAEVLR 149 Query: 77 ELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL 136 +++ + + R E P+I +Y +RM E +A E D ++ Sbjct: 150 DIEALPRLPALDKVIGRPGEYRPLIFSDGCIYQHRMLWCEDQLAARLRERLGGARDDTSM 209 Query: 137 LAQTLDKLFPVSDEI-----------------------------------------NWQK 155 + + + + Q Sbjct: 210 AGRAAPRTTAGTAAGAAGDSAGAVAGDAASEDAASAALAAVLARPAMVGADAVVLSDEQA 269 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 A A +R VISGGPGTGKT V +L L ++ + LAAPTGKAA R+ S Sbjct: 270 AAVRAATRQRFCVISGGPGTGKTAIVVTILRTLARLGESPESA-LLAAPTGKAANRMGSS 328 Query: 216 LGKALRQLPLTDEQKKRIPEDAS---TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 + AL +P D +++ E AS TLHRLLG P R R H NPL ++VDEAS Sbjct: 329 IRSALLAVPDPDPVDRQLLERASEPQTLHRLLGYVPVLDRFRQHENNPLRARTVIVDEAS 388 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 MID +M RL+ A+P R++ LGD DQL SV+AGAVL D+ A A G AR+L+ Sbjct: 389 MIDAELMERLLRAVPSETRLVLLGDADQLPSVDAGAVLRDLVA-AGTGDDGGFARRLTHS 447 Query: 333 TGTHV-----PAGTGTEAASLRDSLCLLQKSYRFGSD---SGIGQL----AAAINRG-DK 379 V A G A R L R + GI L A G Sbjct: 448 YRMDVRDPAGRAILGAAQAMNRGETALALPIRRAAKELQWHGIELLDTVGATGATEGTTA 507 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 A DF D + + A L + A+ ++ + + Sbjct: 508 PAADIAAVNDFVDHWYDKRIASDREFARLSTKTFQRHDDAFTPEDAADLRALMSIYERSR 567 Query: 440 LLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG 499 LL R G +N R+ + + + P +Y G PVM+ RND GLFNGD G Sbjct: 568 LLTVTRRYDTGAEAINRRLHRRVITAASVDYGPD--FYPGEPVMMRRNDYERGLFNGDQG 625 Query: 500 IALDRGQGT-----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 + + + R+ FA + + E +AMTVHKSQGSEF AL+LP Sbjct: 626 VVVRVSENGEPQRFRLAFARGEEFAVFSLDALRMHVELAFAMTVHKSQGSEFSEVALVLP 685 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 + P+ TRE++YT VTRARR + L +L AIA R ER SGLA + Sbjct: 686 LEAIPLATREMLYTGVTRARRAVVLVGAPALLRTAIAQRGERFSGLADKLA 736 >UniRef50_A5N3G4 Predicted exodeoxyribonuclease n=26 Tax=Clostridium RepID=A5N3G4_CLOK5 Length = 750 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 135/591 (22%), Positives = 234/591 (39%), Gaps = 108/591 (18%) Query: 47 GEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR 106 G+ +P+ L N S ++ + E +E L V + + Sbjct: 223 SRGNTYVPIDVLIRNGMSILGVSQ---KELEKNIYESSLNGKIKVEKYGDKI-------C 272 Query: 107 LYLNRMWCNERTVARFFN--EVNHAIEVDEALLAQTLDKLFPVSDEIN---WQKVAAAVA 161 ++ + E +V + N ++D + + K F ++ I QK A + Sbjct: 273 VFSMTYYYCELSVTKKILTLAFNKCKDIDLNIYEEI--KNFEKANNIKFAFSQKEAIKGS 330 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 + + +I+GGP T ++ +IQ+ + ++ +AAPTG+AA R++E+ + Sbjct: 331 VENSVEIITGGP----GTGKTTIINCMIQLFEKSNLKVLMAAPTGRAAKRMSEATKR--- 383 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQ----RLRHHAGNPLHLDVLVVDEASMIDLP 277 +A T+HRLL S +PL DV+++DEASMID+ Sbjct: 384 --------------EAKTIHRLLEIGVESDDEALFFSRGEESPLQCDVVIIDEASMIDIV 429 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 MM+ L+ A+ R+I +GD +QL SV G VL D+ Sbjct: 430 MMNNLLKAISLKTRLIIVGDSEQLPSVGPGNVLRDLID---------------------- 467 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 S + L++ +R +S I A IN G+ + +DF I+ Sbjct: 468 ---------SRCIKVVRLKEIFRQSRESMIIVNAHKINLGEMPILNKKL-KDFYFIKALE 517 Query: 398 LQSGEDYIAML-EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE 456 + + + L + L + + D ++ Q+L +R+G GV+ LN Sbjct: 518 FSNILNLLVELANKRLPAFNGHWDKMKH-------------IQILSPMRKGILGVSNLNR 564 Query: 457 RIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSAL--------------GLFNGDIG 499 ++++ + K +K + G VM +N+ L G+FNGD G Sbjct: 565 KLQEALNPKSNNKKEKYFRDMIFRVGDKVMQIKNNYTLKWTVISGEKEEKGMGIFNGDFG 624 Query: 500 IALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 D + V + L E + + +T+HKSQGSEF + + Sbjct: 625 YIEDIDEEKDTVTVIFDEEKRVVYDSICLDELDLAYGITIHKSQGSEFPVIIVPMFMGPV 684 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSSR 607 ++ R L+YTA+TRA+ + L D R L+ I+ ER S L Sbjct: 685 LLMNRNLLYTAITRAKEMVVLVGDLRALTFMISNNKSFERYSLLKYRIMDI 735 >UniRef50_B4RLU6 RecD n=26 Tax=Neisseria RepID=B4RLU6_NEIG2 Length = 592 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 192/600 (32%), Positives = 274/600 (45%), Gaps = 56/600 (9%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 ++F AG + + L GH + RL +EA Sbjct: 28 IRFLERYAGSGNEVLANCTERLFQALQNGHSFI---RLSGDEADA--------------- 69 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEV--DEALLA 138 L++ A G P+IL G RL+L RMW E +A + A D A Sbjct: 70 -----LSALAPVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGAR 124 Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 Q L K F + Q+ AAA+AL + VI+GGPGTGKTTTVAKLLA + + Sbjct: 125 QNLAKWFQGAG-SEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLALICGENE-NLPH 182 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI-PEDASTLHRLLGAQPGSQRLRHHA 257 I LAAPTGKAAA + +L +A+ + ++ + + T+HRLL P + Sbjct: 183 IALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDH 242 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 PL DVL+VDEASM+D +M +L+ A+ ARVI LGD +QL SV GAVL + Sbjct: 243 IRPLPFDVLIVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVL--SQ 300 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 E ++L+ H L + L S+RFG +SGIG LA A G Sbjct: 301 KTVLDGETHQRLAGFLPEH-GFSVSANPPVLAQNTAHLSFSHRFGDNSGIGCLARAAVSG 359 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 D+ A F L S A +E + Y ++ + ++ Sbjct: 360 DEGA-----WALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDG-NIEAAYAGISD 413 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +L A R+ NE ++++K I H ++ G P+MI +ND AL LFNGD Sbjct: 414 IVVLAAWRQ---DAEDFNEAYCSYVRRKMNIPE--HLAYFAGEPIMIRQNDYALELFNGD 468 Query: 498 IGIALDR---GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 IG+ ++ +FA DG K V S LPE E +AMTVHKSQGSE+ L LP Sbjct: 469 IGLIMEDVGRQGSLAAYFADADG-FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWL-LP 526 Query: 555 SQRTPV---------VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 P +++EL+YTA+TRAR + + ++ A+ T R++ L ++ Sbjct: 527 PSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAVNTVKVRQTALGSMLE 586 >UniRef50_C3CTA5 Helicase RecD/TraA n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTA5_BACTU Length = 750 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 129/586 (22%), Positives = 229/586 (39%), Gaps = 93/586 (15%) Query: 44 HDAGEGHVCL-------PLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE 96 +G +C+ L ++P I ++ + L S A+ + Sbjct: 233 RMQSKGDICIFKDELLDSLEEFIVRVGAYPKNQMISVPIQKIDAILQGLFTSGALVTEEN 292 Query: 97 PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVD-------EALLAQTLDKLFPVSD 149 + +Y E + E+ H+ + + + + FP+++ Sbjct: 293 NDGKV----CIYRADYHRIENNIVSGLKELVHSFKTPLCQKHHIDDFIQEYEKAYFPLAE 348 Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 + Q A +AL IS+++GGPGTGKT T ++ + ++ + I L APTGKA+ Sbjct: 349 K---QAEAVYMALLNGISILTGGPGTGKTQTTNTIVQCIKKV--NPKATILLLAPTGKAS 403 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 R+TE DAST+HR LG N L D +VVD Sbjct: 404 KRMTELTNM-----------------DASTIHRGLGLNSFGGT---KELNQLTSDFIVVD 443 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+D + ++L++ + ++ R++F+GD DQL SV G +L D+ Sbjct: 444 EFSMVDAYLANKLVNNIGENTRILFVGDVDQLPSVGPGLILRDLIDSGKIP--------- 494 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 + L K +R +S I + + G T + D Sbjct: 495 ----------------------VTKLDKVFRQAENSQIVMNSYKVIHGKTTKDPDGIRFD 532 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPF 449 T ++ +Q ++ + + ++ + R +D + ++ LL +R G Sbjct: 533 HTKGDEYFIQE-KNSLVIRKKIIESIQRMIDKYHYK---------LDDICLLSPMRIGDL 582 Query: 450 GVAGLNERIEQFMQQKRK---IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-- 504 G LN I+ R + + G V+ N+ LG++NG++G+ Sbjct: 583 GTDELNRAIQLHFNPPNSSMDYQRDEFTTFRTGDKVIHTENNKDLGVYNGEVGVVSSIYT 642 Query: 505 -GQGTRVWFAMPD-GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 +V PD + + + + + +A+T+HKSQGSEF + + + T Sbjct: 643 YEGEFKVDVEYPDREDPVAYTEKDMEQLQLAYAITIHKSQGSEFPIVIMPFHESQLSMST 702 Query: 563 RELVYTAVTRARRRLSLYADERILSAAI--ATRTERRSGLAALFSS 606 R L+YT TRA++ L DE L+ I + T R S + Sbjct: 703 RNLIYTGRTRAKKILISIGDEETLNKGILKVSDTNRNSRIKEKLQK 748 >UniRef50_A8SRT9 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SRT9_9FIRM Length = 797 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 134/530 (25%), Positives = 214/530 (40%), Gaps = 107/530 (20%) Query: 113 WCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE------INWQKVAAAVALTRRI 166 + E AR A+++D + +DK+ ++ + Q+ A A+ + Sbjct: 333 YYTELNSARMLT----ALDIDFSKAKLNIDKVIKTVEDEEKIQLADAQRQAVEKAVGHGV 388 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 +VI+GGPG T ++ LI++ + R I LAAPTG+AA R+TE+ G A Sbjct: 389 AVITGGPG----TGKTTIINVLIRIYESLRMNIVLAAPTGRAAKRITEATGYA------- 437 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQR-------LRHHAGNPLHLDVLVVDEASMIDLPMM 279 A T+HRLL G + NPL DV+++DE SM+D + Sbjct: 438 ----------AQTIHRLLELNGGVDDDGDSVYVFARNESNPLEADVIIIDEMSMVDSGIF 487 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 L+ A+ R++ +GD +QL SV G VL DI A Sbjct: 488 YSLLKAVTPGTRLVLVGDSNQLPSVGPGNVLKDIIASGVF-------------------- 527 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 + +L + YR G DS I A IN G +K +DF I + Sbjct: 528 -----------HVSVLDRIYRQGKDSDIIGNAHKINAGVHIEIKNK-SEDFFFIPRNGYN 575 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 + +L + P ++ Q+L +R+ G+ LN +++ Sbjct: 576 EIISELKVL--------------MTKQLPSFFKVNSSDIQVLTPMRKFDLGIENLNRQLQ 621 Query: 460 QFMQQKRK---IHRHPHSRWYEGRPVMIARNDSA-----------------LGLFNGDIG 499 + + K + + +G VM +N+ +G+FNGDIG Sbjct: 622 EILNPSGKGKPEYVRGDVVFRQGDKVMQVKNNYKQEWKIMDPTGRFAKEEGVGVFNGDIG 681 Query: 500 IALDRGQ-GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 ++ DG ++L E E +A+T+HKSQGSE+ L L Sbjct: 682 FVRTVDDYDQKIIVEFDDGRQSEYPYNQLEELEHAFAITIHKSQGSEYPVVVLPLLRCPP 741 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSS 606 ++ R L+YTAVTRARR + + + + +A I E R + A S Sbjct: 742 KLLNRNLLYTAVTRARRCVVIVGNIGLANAMIDNEDEQKRFTTFALRLSE 791 >UniRef50_C7Q0I8 Helicase, RecD/TraA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0I8_CATAD Length = 740 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 158/619 (25%), Positives = 243/619 (39%), Gaps = 94/619 (15%) Query: 6 QLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLA-AALLSHDAGEGHVCLPLSRLENNEA 63 L+E V D + A VA + + A + L +G + + L + A Sbjct: 189 LLIEKVRGIGFAIADKIALASGVAEQDPKRLRAALSDRLEAARRDGDCYMNRTHLLVDAA 248 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR----LYLNRMWCNERTV 119 + I E L A +AV +P P + ++ + ER + Sbjct: 249 RLVGQDRELVRIE-----LEQLAADRAVILEPDPNPGLEDVGPPATVVFAKTLHNTERAL 303 Query: 120 ARFFNEVNHA---IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 A V HA + V A+TLD P D Q+ A +ALT +SV++GGPG G Sbjct: 304 ATAVTRVLHADSDVPVAARRRAETLDADHP--DLHEGQRAAVGMALTHTVSVLTGGPGCG 361 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 K+ TV + Q+ R+ LAAPTGKAA RL E G Sbjct: 362 KSHTVKTI----AQIVKACGGRVTLAAPTGKAAKRLAELTGMR----------------- 400 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 A T+HRL+ P + +PL D++VVDEASM+D+ + +L +P ++ +G Sbjct: 401 AMTVHRLVADLPDADPDALFEDSPLMADLIVVDEASMLDVFLGLKLARQVPPGTHLLLVG 460 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL S+ G+VL D+ + T L Sbjct: 461 DVDQLPSIGPGSVLKDLLRVPDVART-------------------------------ELT 489 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 +R G S I A I G ++ E + +E+ Sbjct: 490 HVFRQGEGSSITTNAHLIRAGRMPN----------------PRTSEFWFDEVEDPAQVAE 533 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPH 473 R L++ R + ++ Q+L A R G G L R+++ + + H Sbjct: 534 RILEIATGRIPASHGVPP-SDVQVLAATRRGATGTVELGRRLQERLNPADPDKAEHWAGT 592 Query: 474 SRWYEGRPVMIARNDSALG---LFNGDIGIALD-RGQGTRVWFAMPDGNIKSVQPSRLPE 529 S + G VM RND G +FNG + D Q V DG+I L + Sbjct: 593 SVFRIGDKVMPIRNDPNKGSAGIFNGTTAVVSDLDPQSRTVQLRTDDGDIAVYDFDELDD 652 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTP-VVTRELVYTAVTRARRRLSLYADERILSA 588 +A++VH+SQGSE+ + L ++ P ++ R L+YT VTRA++ + L R L Sbjct: 653 LLHAYAISVHRSQGSEYPYVVAPLTTETGPLMLYRNLLYTLVTRAQKLVVLVGQRRALEI 712 Query: 589 AIATRTE-RRSGLAALFSS 606 A+ R + LA + Sbjct: 713 AVHNAGRARNTALAQRLQA 731 >UniRef50_C9LLQ3 Helicase, RecD/TraA family n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLQ3_9FIRM Length = 709 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 145/587 (24%), Positives = 233/587 (39%), Gaps = 95/587 (16%) Query: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLL 86 + D V +LS GHVC P ++ + ++ + E + Sbjct: 206 IPEDSDRIVHGIFYILSQAVSGGHVCGPSDQVYTAASELLRVSPEIVET----------V 255 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA---RFFNEVNHAIEVDEALLAQTLDK 143 +AV G P+ + LYL ++ E A E + A+ + Sbjct: 256 GREAVDFGTVPSVVYEGKTYLYLPYLYEAETESAYRVHHLMEAGPLGSANLAIERFEKEN 315 Query: 144 LFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 F ++ E Q+ A ++ + VI+GGPG T L+ A+I A+ L A Sbjct: 316 GFRLAKE---QRDAVEKSMKAGMMVITGGPG----TGKTTLIRAIITAAEQNGLEPALMA 368 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA---QPGSQRLRHHAGNP 260 PTG+AA RL S G+ DA T+H+ L A + G + NP Sbjct: 369 PTGRAAKRLAISSGR-----------------DADTIHKALEASVRETGRTYFERNEANP 411 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 L D+++VDEASM+D+ + L+ AL D AR+I +GD DQL V AG L D+ ++ Sbjct: 412 LEEDLIIVDEASMLDISLFYHLLCALKDGARLILVGDIDQLPPVGAGEPLKDLMSWGYVP 471 Query: 321 FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 + L++ +R SGI + AA I +G+ Sbjct: 472 -------------------------------IVRLKRIFRQEEGSGIVENAALIRKGEMC 500 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 ++GE I + Y +DL + + + Q+ Sbjct: 501 VPD---------------EAGEFRIVYAADDEDAYRIVMDLCRELNYGNEENKML--LQV 543 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L + G GV LNE +++ + ++ +++ G VM RND G++NGD+G Sbjct: 544 LSPMYRGVCGVDHLNESLQEMIHGEKVPD---GMKFFPGDKVMQTRNDYEKGIYNGDVGT 600 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 +V+ D + + + +A+TVHKSQGSE++ IL + + Sbjct: 601 VW-TATPQKVFVRYFDKEVV-YEGEERFDLRLAYAVTVHKSQGSEYETVIFILRPSQHNM 658 Query: 561 VTRELVYTAVTRARRRLSLYADERILSA--AIATRTERRSGLAALFS 605 + R L+YT VTRAR+ L L AI R S + Sbjct: 659 LQRNLLYTGVTRARKNTILVTAPDALRRALAIQHTGNRYSLFLPFLN 705 >UniRef50_C8PVE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVE9_9GAMM Length = 653 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 177/635 (27%), Positives = 287/635 (45%), Gaps = 105/635 (16%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECL-LAS 88 E P + L++ EGH ++ +E S + NW + + Sbjct: 57 KEKPKILQIFDELNNQLSEGHTVYEMTVNSADEKS-------LIAALTTNNWASVIGVKE 109 Query: 89 QAVSRGDEPTPMILCGDR--------------LYLNRMWCNERTVARFFNEVNHAIEVDE 134 + D TP+IL ++L+R W E+++A+ ++ H Sbjct: 110 DELYNHDTNTPIILQKLNQAADGVGETQVNYIVWLHRQWHAEQSLAKQLMKIAHRKVAAF 169 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + ++ + D ++ Q++A + +S+I GGPGTGKT TVAKL+ L + + Sbjct: 170 SGISASQDIDNGLAPNA-MQQLAIEKSSQHALSIIIGGPGTGKTFTVAKLVTTLQKEHEH 228 Query: 195 ER--------CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 +R I L APTGKAA R+ +SL +L++ +E ++A TLHRLLG Sbjct: 229 KRKQDPNLPPLSITLTAPTGKAAQRMQQSLRISLQKSLQDEEITL---DNAKTLHRLLGI 285 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 R+HA NPL D+++VDEASM+ L + S+L+DA+ R+I LGD +QLA+V+A Sbjct: 286 GSDG-TPRYHAKNPLPDDLIIVDEASMLGLELASQLVDAIKPTGRLILLGDANQLAAVDA 344 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G+VL D+CA L+ + L +S RF S+S Sbjct: 345 GSVLSDLCA-----------------------------VTRLQPYITELTESKRFDSNSV 375 Query: 367 IGQLAAAINRG-----------------DKTAVKTVFQQDFTD----------IEKRLLQ 399 +GQ A AI + D A+K ++ D I + Sbjct: 376 VGQFALAIQQNLPAPKKIKLIQRLLQPIDLQAIKPSQSENPPDLAGKTQQTANIPFYPID 435 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQ----------ARAEPDLIIQAFNEYQLLCALREGPF 449 + +A+ + Y + L+Q A + + F+ Y++LCA +G Sbjct: 436 ASSSLLAVFNQLAKPYHPFFALMQQWYSQPVNIFAADNRKGLFEVFDSYRILCAGHQGQL 495 Query: 450 GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR 509 G +N+++ + KI R + +Y G P++I ND LGLFNGDI I L Sbjct: 496 GTQSINQKMSLAFTEFSKITRT-KAYFYHGLPIIIQNNDYQLGLFNGDIAICLLYQGQLY 554 Query: 510 VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 FA + +Q + +AMT+HKSQGSEF A+ + T ++++ L+YTA Sbjct: 555 ACFA---EKVIPIQRLSRESCDYAYAMTIHKSQGSEFHTVAICIDKAHTRLLSQALIYTA 611 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 VTR++ LS+Y+ + A+ + R++GL F Sbjct: 612 VTRSKSALSIYSAKENFELAVTQKAVRQTGLQLQF 646 >UniRef50_Q6ANK0 Related to exodeoxyribonuclease V, alpha chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK0_DESPS Length = 527 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 198/564 (35%), Positives = 282/564 (50%), Gaps = 79/564 (14%) Query: 19 LDVQFALTV------AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 L+ F + AG+E + + L G C+ L++ Sbjct: 6 LEKHFTEFLTGISGLAGEEALRFSGIISGLMQHLAGGSSCVELAK--------------- 50 Query: 73 SEIGELQNWEECLLASQAVSRGDEP-TPMILCGDRLYLNRMWCNERTVARFFNEVNHA-- 129 GEL + L++Q + P TP++L G RLYL R + E +AR + Sbjct: 51 ---GELALLGKSTLSTQVAGIDETPLTPLVLYGRRLYLQRYFVYEARLARQLLDYASGQS 107 Query: 130 -IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + +D LLA T + +E N Q+ AA AL V+SGGPGTGKTTTV ++L AL Sbjct: 108 VLRIDPDLLAATFPEELDEGEE-NHQQKAAEKALQTPFLVVSGGPGTGKTTTVVRIL-AL 165 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP--LTDEQKKRIPEDASTLHRLLGA 246 + A G + + LAAPTGKAA RL ES+ +LP L + + +PE A TLHRLLG Sbjct: 166 LHHAIGHKLDVALAAPTGKAAQRLYESILGGADRLPEQLRRDVGEWLPEKAVTLHRLLGT 225 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 Q S R RH+ NPL D++++DEASMIDL MMS+L+DAL R+I LGD+DQLASVE+ Sbjct: 226 QLNSTRFRHNRENPLGWDLVLLDEASMIDLAMMSKLVDALKPGGRLILLGDKDQLASVES 285 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G VL T + L L K+YRF + Sbjct: 286 GTVLA-------------------------------TVISGLARCSAQLIKTYRFNDE-- 312 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I +A A N G+ + ++ ++ ED+ A +E Y + +L Sbjct: 313 IKAIAIATNAGNGHRAWQLLEK----------RAVEDWQAYIEGNYRKYISSVQMLSGSG 362 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIAR 486 D + ++ +LC R G V G+N+ +E+ + ++ R +S WY GRP++I++ Sbjct: 363 AED-AFASLKKFMVLCGTRRGRRAVEGINQMVEEDLLRQGL--RGSNSSWYIGRPILISQ 419 Query: 487 NDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 ND LGL+NGDIGI L G +VWF G P L +++T +AMTVHKSQGSE Sbjct: 420 NDYNLGLYNGDIGICLPDEDGMLKVWFETGSGTFIRFLPVALSDYDTVFAMTVHKSQGSE 479 Query: 546 FDHAALILPSQRTPVVTRELVYTA 569 F ++LP + PV+ REL+YT Sbjct: 480 FTEVMMVLPIEDNPVLCRELIYTG 503 >UniRef50_C4V2J7 Exodeoxyribonuclease V alpha subunit n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2J7_9FIRM Length = 723 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 148/614 (24%), Positives = 247/614 (40%), Gaps = 97/614 (15%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL---SHDAGEGHVCLPLSRLENNE 62 QL + V+ D A +++ +AA +L + A GH C+P + L + Sbjct: 194 QLAQEVDGIGFVTADT-IAAACGWEKNSMERIAAGILFELAQIASNGHCCIPEALLIEHT 252 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 A L ++I ++ E + AV E +Y +++ E A Sbjct: 253 AKR--LGVEHADIMDVLRREVKMHRVYAVDEMGE--------RLIYSPQLYHAEVETADL 302 Query: 123 FNEVNHAIE----VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 + E + A L T +K V+ Q+ A +L + +++GGP Sbjct: 303 LRMLKQKAEPIHVHNPAALVSTWEKEHDVT-LAQQQRDAVIASLLHGVVILTGGP----G 357 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T ++ ++I + + I LAAPTG+AA RL+E+ G A+ Sbjct: 358 TGKTTVIRSMIDIMGEQGLEILLAAPTGRAAKRLSEATGA-----------------PAA 400 Query: 239 TLHRLLGAQP---GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 T+HR+L AQ G A L DV+++DE SM+D+ +M L+ A+ +IF+ Sbjct: 401 TVHRMLEAQGREDGEMHFARDAECMLEADVIIIDEVSMMDIVLMQHLLSAVLPGTHIIFV 460 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL ++ G+VL D+ L P L Sbjct: 461 GDADQLPAIGPGSVLKDL------------------LRSGVFPC-------------VRL 489 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 + +R + I A AIN G + T + DF+ + + I + ++L Sbjct: 490 TQIFRQNNRGTIVLNAHAINTG---CMPTFTEDDFSFVPAVSAEEAAKQILSICQSLIAT 546 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 G + + Q+L +R GV N +++ + + + ++ Sbjct: 547 GHSV----------------MDMQVLSPMRREACGVDAFNRTLQEALNPQTEDNKLIAG- 589 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 + G VM RND +FNGD+G + ++ D + + Sbjct: 590 FRSGDKVMQIRNDYTKNVFNGDVGRIVWIDT-EKLIVQYTDDVDVTYTRDEFVSLTLAYV 648 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-RT 594 M+VHKSQGSE+ L L ++ R L+YTAVTRA++R+ L D L A++ RT Sbjct: 649 MSVHKSQGSEYSTVILPLVRAHHIMLQRNLLYTAVTRAKKRVILVGDRTALFTAVSNDRT 708 Query: 595 ERR-SGLAALFSSR 607 RR + LA + R Sbjct: 709 RRRYTLLAERLAER 722 >UniRef50_Q1J056 Helicase RecD/TraA n=3 Tax=Deinococcus RepID=Q1J056_DEIGD Length = 726 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 150/587 (25%), Positives = 228/587 (38%), Gaps = 98/587 (16%) Query: 24 ALTVAGDEHPAVTLAAALLSHDAGE--GHVCLPLSRLENNEASHPLLATCVSEIGELQNW 81 A A D+ +T AA AG+ GH LP +R E + ++ + + Sbjct: 235 AQGGAQDDPRRLTAAAVYALQQAGQQGGHAFLPRARAERGVLHYTRVSPEQARL------ 288 Query: 82 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL 141 A++ D+PTP R+YL + E+ +A + A+ Sbjct: 289 -AVETATELGRLADDPTPA--GESRIYLPHVLRTEKKLAGLIRTLLATPP----AGAEWA 341 Query: 142 DKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRL 201 + Q + R+ V++GGPGTGK+T A+ +A+ + L Sbjct: 342 VPVGAAQGLSEEQARVLQLLEDHRLVVLTGGPGTGKSTAT----RAVADLAERLGLEVGL 397 Query: 202 AAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPL 261 APTGKAA RL E G+ AST+HRLLG P RH+ P Sbjct: 398 CAPTGKAARRLGEVTGR-----------------PASTIHRLLGYGPAG--FRHNHLEPA 438 Query: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 D+L+VDE SM +M L+ A+ ARV+ +GD DQL V++G L I A Sbjct: 439 PYDLLIVDEVSMTGDALMLSLLAAVAPGARVLLVGDTDQLPPVDSGLPLLAIAQTA---- 494 Query: 322 TAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 L YR +++ I + A + G + Sbjct: 495 -----------------------------PTVRLSTVYRQAAENPIIRAAHGLLHGQAPS 525 Query: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 + D+ + G +A++ L G GR Q+L Sbjct: 526 ----WGDPRLDLTETEPDVGARRVALMVRDLGGPGR--------------------VQVL 561 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 +R+GP GV LN ++ R G V+ +ND +FNG +G Sbjct: 562 TPMRKGPLGVETLNRHLQALFNPGEGGTRIADGEARPGDVVVQTKNDYQNEVFNGTVGTV 621 Query: 502 LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 L + +G R+ DGNI + + L + +A+TVH++QGSE+ +L P++ Sbjct: 622 L-KAEGGRLTVDF-DGNIVELAGAELFNLQLGYALTVHRAQGSEWPTVLGVLHEVHMPML 679 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAI-ATRTERRSGLAALFSSR 607 +R L YTA+TRAR R A R ER + L R Sbjct: 680 SRNLAYTALTRARERFLAVGSASAWEKAAGRQREERNTALLERIRRR 726 >UniRef50_Q039P4 ATP-dependent DNA helicase, RecD/TraA family n=9 Tax=Lactobacillus RepID=Q039P4_LACC3 Length = 822 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 148/632 (23%), Positives = 234/632 (37%), Gaps = 108/632 (17%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDA----GEGHVCLPLSRLENN 61 QL+ ++ D Q A +A + L A++ GEG + L L Sbjct: 190 QLINDIDGIGFTRAD-QIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYVTLKSLVTQ 248 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 A V+ + QA+ + +I GDR++ R++ E + R Sbjct: 249 TLDLLERARNVAVSPD--------AVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQIGR 300 Query: 122 FFNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGGP-- 173 + A ++K + Q+ A AL I +++GGP Sbjct: 301 QLKGLAEADATATEPELAEIEKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGPGT 360 Query: 174 -------GTGKTTTVAKLLAA-LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 G +T L+ L Q E I LAAPTG+AA R++E+ Sbjct: 361 GKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPTGRAAKRISETT--------- 411 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 AST+HRLLG +Q A N L +L++DE SM+D + L+ A Sbjct: 412 --------QLPASTIHRLLGLGVDTQEF---APNELPNGLLIIDEMSMVDTYLFRTLLTA 460 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 L +++ +GD+DQL SV G V D+ TA Sbjct: 461 LHPGMKIVLVGDKDQLPSVGPGQVFADLLRSGVLPQTA---------------------- 498 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L +R +DS I LA A+N G T Q D + + Q E Sbjct: 499 ---------LTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACAPSQVPEVVG 549 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 +++ A + + Q+L + G G+ LN ++ + K Sbjct: 550 QVVQRAAVKQF-----------------SIADIQVLAPMYRGTAGIDRLNPLLQNILNPK 592 Query: 466 R----KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV------WFAMP 515 R K + + + G V+ ND +FNG+IG + G Sbjct: 593 RSARTKAIQFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKEAESKTDELTIDF 652 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 DGN + + S + +A ++HK+QGSEF L L Q ++ R L+YTA+TRA+ Sbjct: 653 DGNEITCKRSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRAKS 712 Query: 576 RLSLYADERILSAAIAT-RTERRSGLAALFSS 606 L L + A++ R +GL + Sbjct: 713 FLILVGELAAFQEAVSEVAVNRHTGLVDRLMT 744 >UniRef50_B1C665 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C665_9FIRM Length = 737 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 139/631 (22%), Positives = 245/631 (38%), Gaps = 110/631 (17%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNE 62 L++ V + D Q A++V + + + + LS +G+ + LE Sbjct: 181 ALIDDVYGIGFKRAD-QIAMSVGIEMESPYRIISGIKYTLSSCYRDGNTYILKDELEEKV 239 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 A + + N L + E +R +L ++ E A+ Sbjct: 240 AKILGVNKDIISH----NLANLFLDDSVILEVTE------DEERCFLKELYECEIESAKN 289 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGGPGTG 176 + E D + DKL +EIN QK A A+ ++S+I+GGP Sbjct: 290 LMGLISYNEKDSEEID--FDKLIKKYEEINEINLDKTQKEAVISAIKSKVSIITGGP--- 344 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T ++ A+I + + L APTG+AA R++ES + Sbjct: 345 -GTGKTTIINAIIYILGSIGEKYTLTAPTGRAAKRMSEST-----------------KSE 386 Query: 237 ASTLHRLLGAQPGSQR-----LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 A T+HRLL + + + N + D +++DE SM+D+ + + A+ + Sbjct: 387 AKTIHRLLEYEYTLEDDHFLSFGKNEDNTIDSDYIIIDEMSMVDISLFDAFLKAVKNKTS 446 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 ++F+GD DQL SV AG VL D+ + Sbjct: 447 LLFVGDIDQLPSVGAGNVLSDLISSEIFP------------------------------- 475 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 + L YR +S I A IN+G +K DF I + + I + Sbjct: 476 VTKLDTIYRQDKESLIITNAHRINKGKMPILKK-EADDFYFINTITQEKIKRNILNI--- 531 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKI 468 + + P ++Q++ L++G GV+ LN+ ++ + + Sbjct: 532 ---------VYNYKNTPLKRYDLLKDFQIISPLKKGLAGVSELNKSVQDILNPAHNTKNE 582 Query: 469 HRHPHSRWYEGRPVMIARNDSAL------------GLFNGDIGIALDRGQGTR-VWFAMP 515 +H + + E VM +N+ + G+FNGD+GI + + + Sbjct: 583 IQHGSTTFRENDKVMQIKNNYQIKWTDINTLKKGEGVFNGDMGIIKKIDKEKQTLEIIFD 642 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 D ++ E ++A+TVHKSQGSEF + + S + + R L+YTAVTRA+ Sbjct: 643 DEKRVIYPKEQMEELNLSYAITVHKSQGSEFKAIIIPIFSGYSGFLNRNLLYTAVTRAKE 702 Query: 576 RLSLYADERILSAAIA--TRTERRSGLAALF 604 + L + L + I + +R++ LA Sbjct: 703 MVILIGEVNGLKSMIKSVQKNKRKTTLAERL 733 >UniRef50_B0P898 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0P898_9FIRM Length = 757 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 137/604 (22%), Positives = 223/604 (36%), Gaps = 90/604 (14%) Query: 16 LRPLDVQFALTVAGDEHPAVTLAAALLSHDAG---EGHVCLPLSRLENNEASHPLLATCV 72 R +D + P A + D G GH+ + LE + L Sbjct: 204 FRRVDAIVQKSGGDLHDPMRIKGAVFCALDEGKSKRGHLYISSEELEKSA-----LKLLN 258 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF-NEVNHAIE 131 +I + + ++ D +YL R++ E AR + + Sbjct: 259 EKIPVPELRLHQQEVRDMMQEMILNGAIVSVKDNIYLPRVFAQEDETARRIAQRLVTQMP 318 Query: 132 VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 V+ K+ Q+ A A +SVI+G PGTGKTT + +L ++ Sbjct: 319 VEHIAPVLEQVKVEMGLRLSAQQEAAVYAAFRHGLSVITGSPGTGKTTVLRTILEVYRRL 378 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 +I L APTG+A+ R++ES G EDA TLH LG Sbjct: 379 H--PDGKIALMAPTGRASRRMSESTG----------------FEDARTLHSGLGLTSEED 420 Query: 252 RLRHHAG-NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 + PL D+++VDE SM+D+ + + + + +AR++ +GD DQL SV AG V Sbjct: 421 EGSRNRKSEPLSADLIIVDEFSMVDMWLAEKFFERMKANARIVLVGDPDQLPSVGAGNVF 480 Query: 311 GDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 +I + +L + +R DS I Sbjct: 481 REIIETQIVP-------------------------------VTVLDQIFRQSKDSLIAYN 509 Query: 371 AAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL 430 A IN G+ K + DF + SG+ E+ Y + Sbjct: 510 AKFINEGN---TKLFYGPDFVFV------SGDSQEDTAEKITERYCLEIQE--------- 551 Query: 431 IIQAFNEYQLLCALR-EGPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEGRPVMIAR 486 Q+L R EG LNE I + + R + + + +M + Sbjct: 552 --SGIENVQILSPFRSEGAASSEQLNETIRELVNPFRSAEEEIKFGPRIFRVNDRIMQTK 609 Query: 487 NDSALGLFNGDIGIA---LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 N + NGD+G D QG ++ G L + +A T+HK+ G Sbjct: 610 NTEK--VSNGDLGFIRYIKDTDQGKKIGMDFGAGRTLEYGVDDLSNVDLAYATTIHKAMG 667 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLA 601 SE++ + L T ++ R L+YT +TRA++R+ L +++L AI +R + L Sbjct: 668 SEYETVIMPLLKAHTIMMYRNLLYTGITRAKKRVVLIGQKQVLFMAIHRNEIGKRNTLLG 727 Query: 602 ALFS 605 Sbjct: 728 MRIQ 731 >UniRef50_A5ZS54 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZS54_9FIRM Length = 2375 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 134/589 (22%), Positives = 221/589 (37%), Gaps = 94/589 (15%) Query: 31 EHPAVTLAAAL--LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLAS 88 + P AA L +S GEGH+ L + VS + E Sbjct: 1852 DDPLRIKAAILHIMSEAEGEGHLYLKREDIIERVEKLLNHNKDVSPVSE----RAIRDTG 1907 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH----AIEVDEALLAQTLDKL 144 + D ++ Y + + E A ++ A+ VD L ++ Sbjct: 1908 NDMIHTDGS--LVCHDGGFYTRKSFQAELGAAAALVRLHMQTGMAVNVDRILRKIQKEQD 1965 Query: 145 FPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 ++ + Q+VA IS+I+GGPG GKTT + ++A +Q A + I L AP Sbjct: 1966 IILNAK---QQVAVKNVFENPISIITGGPGRGKTTVIRFIIA--VQEALDKNAVILLCAP 2020 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG A R+ E A T+H+ +G + P+ D Sbjct: 2021 TGIARRRMRECT-----------------EYPALTIHKSIGLTGEAGEEEWKNEQPIPDD 2063 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 +++ DE SM+D+ + +L ++ AR++ +GD+DQ+ SV G V +I Sbjct: 2064 LIIADEFSMVDMYLADKLFSSIKSGARLVLVGDKDQIESVGPGKVFQEIIDSGVFP---- 2119 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 + +L + +R +S I Q A IN+ + Sbjct: 2120 ---------------------------VTVLDECFRQEGNSTISQNAIKINK---NQLDL 2149 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 VF F I + I + ++LQ + E Q++ L Sbjct: 2150 VFDDTFQFIPASTPEEASRKIQKIYRK--------EVLQRNG-------SLEEVQVMSPL 2194 Query: 445 RE-GPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 R+ G LN + KR + + + EG VM +N+ + NGDIG Sbjct: 2195 RKDTEAGTDALNLVLRDIANPKRFGYPEITNGRNTYREGDRVMQTKNNDE--VANGDIGE 2252 Query: 501 ALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 + + Q + DG + Q +A+TVHK+QGSE+ A L + Sbjct: 2253 VIGIFRKDQKMVMRVDFGDGRVMEYQEEDYWPLTLAYAITVHKAQGSEYPMAILPMLPCF 2312 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALF 604 ++ R + YTAVTRAR R + +R ++ AI T + R + Sbjct: 2313 RWMLRRNIFYTAVTRARERFIIVGSKRAIAQAIRTDYISRRNTMFGYRI 2361 >UniRef50_D2ELG1 RecD/TraA family helicase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELG1_PEDAC Length = 836 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 134/542 (24%), Positives = 223/542 (41%), Gaps = 89/542 (16%) Query: 86 LASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV-NHAIEVDEALLAQTLDK- 143 +A Q + G + ++ ++YL ++ E + + + +V+E + + + + Sbjct: 284 IAEQVLELGKQGR-VVGENGQIYLKWLYQAEEAIGYQLQHLLKNPPKVNEKAVDRAIKRA 342 Query: 144 -LFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD--------- 193 + Q A +AL+ I++I+GGPGTGKTT V L+ + ++ D Sbjct: 343 EEHLALEYDETQNNAIRMALSHGITIITGGPGTGKTTIVKGLINSFAELHDLDLDPNANP 402 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 + I+LAAPTG+AA RL+E G A T+HRLLG G+ L Sbjct: 403 DQDYPIQLAAPTGRAAKRLSEVTG-----------------VPAKTIHRLLGLN-GNDDL 444 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 L ++LVVDE SM+D + + LI A+ +V+ +GD+DQL SV G V D+ Sbjct: 445 HDEQIQELRGELLVVDEMSMVDTGLFNTLISAINAEMQVVLVGDKDQLPSVGPGQVFSDL 504 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 L K YR DS I Q+A + Sbjct: 505 IRSQKIP-------------------------------TISLTKIYRQEQDSSIIQMAHS 533 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 I G+ T + D + I+ Q + + E A+A Sbjct: 534 IQNGEMPDDFTQNRPDKSFIKASAYQVVDAIDQIAERAVARGLSK--------------- 578 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKR----KIHRHPHSRWYEGRPVMIARNDS 489 N+ Q+L + G G+ +N +++ + + K H ++ G V+ N Sbjct: 579 --NDLQVLAPMYRGAAGIDEINRHLQRVLNPPQTDHPKYLEANHQQFRIGDKVLQLVNAP 636 Query: 490 ALGLFNGDIG-----IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 +FNGDIG + G+G DGN + + L + + +++HKSQGS Sbjct: 637 ENNIFNGDIGEITGIVTEKAGKGHAQLIVDYDGNEVTYGKNDLNQLTLAYCVSIHKSQGS 696 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT-ERRSGLAAL 603 EF L + Q ++ R L+YT +TRA + L + A+ + R++GL Sbjct: 697 EFPVVILPMVRQYYRMLQRNLLYTGLTRASDSIILLGEVEAYQRAVQNESANRQTGLVKR 756 Query: 604 FS 605 + Sbjct: 757 LN 758 >UniRef50_C1MI09 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MI09_9CHLO Length = 1068 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 160/670 (23%), Positives = 248/670 (37%), Gaps = 128/670 (19%) Query: 22 QFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLP-------LSRLENNEASHPLLAT 70 A + LAAA+L + + EGHV L ++RL + + L Sbjct: 400 ALAARLGKSADDPARLAAAMLQVLNVNASSEGHVYLHWREMRDGVARLLGPKQAAGLQKG 459 Query: 71 CVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR--------LYLNRMWCNERTVARF 122 + + ++ + A ++G + + ++ ++ E VA+ Sbjct: 460 ALVAAADELLAKKRINRIVAPAKGADEAASASDDEHDASWARYGVFAAVLYDAEAHVAKD 519 Query: 123 FNEVN--HAIEVDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVISGGPGTGK 177 D + + L Q+ +AL ISV++GGPGTGK Sbjct: 520 IARRLKMQKRAPDVPRVRRWLKAAAEREGWRLLSPAQEAFLDLALREPISVLTGGPGTGK 579 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 T V + M ++ + APTG+AA RL E P + Sbjct: 580 TFAVHIAVRLWRAMGR----KVLMCAPTGRAAQRLAEIASAGRS---------MSSPVQS 626 Query: 238 STLHRLLGAQPGSQ--------------------RLRHHAGNPLHLDVLVVDEASMIDLP 277 ST+HRLL + G + + +PL DV+VVDE+SM+DLP Sbjct: 627 STIHRLLEQRAGKRGGAGEEDDDPSDALEFAWKGKFARCKASPLDADVVVVDESSMLDLP 686 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 + + L+DA+ A+V+F+GD DQL SV G+VL D+ L V Sbjct: 687 LCAALLDAVKPDAQVVFVGDADQLPSVGPGSVLRDV------------------LQSRAV 728 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI---- 393 PA L + +R SGI + A ++N G V T D T Sbjct: 729 PA-------------VQLSEVFRQAEQSGIIRAAHSMNAGRIPEVPTRRWDDATRTIVGP 775 Query: 394 ---------------------EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL-I 431 + + ++ + E+ Y L L A P L Sbjct: 776 GPGGGGGSSSNANQSGPLSYQTETWEGADCVWVTVPEDGENAYEGALAALFDGALPALDG 835 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARND 488 + + Q+L R G + LN +++ + R + + EG V+ RND Sbjct: 836 LNPTTDLQVLTPFRRGVASTSQLNVFLQERLNPPSDGRLETKAGEITFREGDRVLQQRND 895 Query: 489 SALGLFNGDIGIALDRGQGTRVWFAMPDG---------NIKSVQPSRLPEHETTWAMTVH 539 +FNGD+G V + S L + WA+TVH Sbjct: 896 YVKEVFNGDLGTVDAVNGDGSVRVVFGGAAAAAALVPAREVTYSRSELRDLLPAWALTVH 955 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RTERR 597 K+QGSE+ L L P++ RELVYTA +RA+ L + + ER L A+ T R Sbjct: 956 KAQGSEYKAVVLCLAENHRPLLRRELVYTAASRAKEVLVILSPERALRTAVQTVGNNSRN 1015 Query: 598 SGLAALFSSR 607 + LA S Sbjct: 1016 TSLARRLSPH 1025 >UniRef50_C0XKM5 Exodeoxyribonuclease V alpha subunit n=3 Tax=Lactobacillus RepID=C0XKM5_LACHI Length = 837 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 142/622 (22%), Positives = 243/622 (39%), Gaps = 100/622 (16%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPL 67 + + K+ + ++ LT A E L A+ G S L N L Sbjct: 212 IRGISFKRADAIALKLGLTAASTERIRAGLLYAIQELCFENGDTYTTTSALLNMAG--DL 269 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 L T Q E L+ + ++ GDR+YL+ ++ E +A N + Sbjct: 270 LDTNTEHQVSGQQLGESLI------ELAKEHKVVGEGDRIYLSYVYNAEVQIAEHLNRII 323 Query: 128 HAIE------VDEALLAQT--LDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 + D+A+ Q ++ F ++ + + Q A A+ +++GGPGTGKTT Sbjct: 324 KNKDDSEDHFSDDAIKNQIRMVESKFDINYD-DSQSQAIIKAVKSPAFILTGGPGTGKTT 382 Query: 180 TVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 + ++ ++ + + I LAAPTG+AA +++S G Sbjct: 383 IINGIVNTYARLHEYSLDINEYKDKPFPIVLAAPTGRAAKHMSDSTG------------- 429 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 AST+HRLLG G + + + + +L++DE SM+D + L+ A+P+H Sbjct: 430 ----LPASTIHRLLGLN-GQESADYTSPKDIEGSLLIIDEMSMVDTFLFRLLMRAVPNHM 484 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 ++IF+GD+DQL SV G V D+ LT +PA Sbjct: 485 QIIFVGDQDQLPSVGPGQVFHDL------------------LTSKQLPA----------- 515 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 L YR S I QLA I+ G + Q D + I E + + E Sbjct: 516 --IHLDNIYRQEKGSSIVQLAHDIHAGKLSDNFDQNQSDRSFIA-----CNETQLPSVIE 568 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF--MQQKRKI 468 +A + D + Q+L + G G+ LN ++ + K Sbjct: 569 QVARRAKDKDF------------GLMDVQVLAPMYRGTAGIDHLNNILQNVWQVNPTGKS 616 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFA-----MPDGNIKSVQ 523 + G V+ N+ +FNGD+GI + D + + Sbjct: 617 VTIRDHTYRIGDKVLQLVNNPEQNVFNGDLGIIVGMEAPKNQAIPTKIMIDFDETEVTYE 676 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 + + + ++HK+QGSEF L + Q + ++ R L+YTAVTRA L + ++ Sbjct: 677 KNEWIQFTLAYCTSIHKAQGSEFPMVILPIVRQYSRMLQRNLLYTAVTRASDFLIMLGEK 736 Query: 584 RILSAAIAT-RTERRSGLAALF 604 + + + R++ L Sbjct: 737 QAFEQCVRSISVNRKTSLVQRL 758 >UniRef50_D2AQX1 Exodeoxyribonuclease V n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AQX1_STRRD Length = 720 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 151/606 (24%), Positives = 232/606 (38%), Gaps = 96/606 (15%) Query: 14 KQLRPLDVQFALTVAG----DEHPAVTLAAALLSH----DAGEGHVCLPLSRLENNEASH 65 Q+R + A +A EH + AA+L A +GH + Sbjct: 192 GQVRGIAFHTADRIALRSGVPEHSPQRIQAAVLDRLETAAARDGHCF----LPLPALLAA 247 Query: 66 PLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE 125 E + + L + V P G +Y E Sbjct: 248 AASLVEQEEELIRRAVDALLAERRVVVETAPDGP----GQVVYAKEQHGREVA------L 297 Query: 126 VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 185 H + A L Q+ A +ALT +SV++GGPG GK+ TV + Sbjct: 298 AAHLARLLRARSTLPLRAFEEHKGLDEDQRAAVNLALTSTVSVLTGGPGCGKSYTVRVIA 357 Query: 186 AALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 A + M + L APTGKAA RL+E A T+HRLL Sbjct: 358 ATVRAMGG----TVTLTAPTGKAAKRLSELTR-----------------LPAMTVHRLLA 396 Query: 246 AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 QP + +P D++VVDEASM+DL + +RL A+P + ++ +GD DQL S+ Sbjct: 397 RQPEREEGTLFQQSPAEADLIVVDEASMLDLQLATRLTAAIPAGSHLLLVGDSDQLPSIG 456 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 G+VL D+ R ++ R L + +R DS Sbjct: 457 PGSVLADLL----------RVEEVPR---------------------IRLARVFRQAQDS 485 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 GI Q A I G+ A+ F +++ + + L Sbjct: 486 GIVQAAHRIRAGELPALPGRGGFWFEELDDPDQVADR----------------VVHLATE 529 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHRHPHSRWYEGRPV 482 A P ++ Q+LC +R+G G A L R+++ + R+ H S + G V Sbjct: 530 AIPRKQDIGRDQVQVLCPMRKGATGTAELGRRLQERLNPAREGTAEHWSGPSVFRVGDRV 589 Query: 483 MIARNDSALGLFNGDIGIALD-RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 M RN+ G+FNG+ Q V DG + L E ++A++VH+S Sbjct: 590 MPIRNNYDKGVFNGETATVTAVNPQDRLVEIRTDDGENVTYTFDELDELTHSYAISVHRS 649 Query: 542 QGSEFDHAALILPSQR-TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERR-SG 599 QGSE+ + ++ ++ R L+YT VTRA+ + L L A+ RR +G Sbjct: 650 QGSEYPFVVAPIVAEAGGVMLRRRLLYTLVTRAKSWVVLVGQREALELAVHRLGYRRNTG 709 Query: 600 LAALFS 605 LA + Sbjct: 710 LALRLA 715 >UniRef50_UPI00016C0EC6 helicase, RecD/TraA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EC6 Length = 740 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 140/601 (23%), Positives = 245/601 (40%), Gaps = 113/601 (18%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASH-PLLATCVSEIGELQNWEECLLASQAVSRGDEPTP 99 +L+ +GH C LE + V+ E+ N E L V + + Sbjct: 216 VLNAIKSDGHTCCSKVFLEQEVMRLLDVDIELVNNAMEMLNLERKL-----VIKVYDSEV 270 Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVNHA-----IEVDEALLAQTLDKLFPVSDEINWQ 154 M+ C LY E+ +A+ + A D ++ + D + Q Sbjct: 271 MV-CNIALYYK-----EQEIAKRLMTLASAEKKLNANFDVRKEMAQTERELKI-DLVKEQ 323 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 + A ++ + ++VI+GGP T ++ ALI M + LAAPTG+AA R+ Sbjct: 324 REAIINSMVKGVTVITGGP----GTGKTTIIKALIHMVAKLDETVLLAAPTGRAAKRMEI 379 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGA------QPGSQRLRHHAGNPLHLDVLVV 268 + + T+HRLL SQ + NPL DVL+V Sbjct: 380 AT-----------------QAETKTIHRLLEIAFNKDKSFESQFFCRNEDNPLETDVLIV 422 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 DE SM+D+ +M ++ AL + R++ +GD DQL SV AG +L DI Sbjct: 423 DEISMVDIYLMDSILKALRCNQRLVLIGDTDQLPSVGAGNILRDIIKSGKIK-------- 474 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 + L++ +R +S I A IN G++ + + Sbjct: 475 -----------------------VIRLEQVFRQAKESAIIINAHKINHGEE-IIANKEKS 510 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL-IIQAFNEYQLLCALREG 447 DF I+++ ++ + +DL+ R + + Q+L +R+G Sbjct: 511 DFFIIDEKTQNDVKNTL-------------VDLMTKRLPAKYEDLDVMKDVQILVPMRKG 557 Query: 448 PFGVAGLNERIEQFMQ---QKRKIHRHPHSRWYEGRPVMIARNDSAL------------- 491 GV LN ++ + ++ + + ++ + G VM +N+ L Sbjct: 558 LLGVHELNGVMQNALNLKSDDKEEYEYRNTLYRVGDKVMQTKNNYNLIWKVPAGSGLVVD 617 Query: 492 ---GLFNGDIGIALDRGQGTRVWFAMPDGNIK-SVQPSRLPEHETTWAMTVHKSQGSEFD 547 G++NGD+G+ + + +V DG + + + L E + ++ T+HKSQGSE+ Sbjct: 618 EGMGVYNGDMGVIKEIDKYEKVITVEFDGKKRVDYEYANLGELDLSYVTTIHKSQGSEYP 677 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 L L S T +++R L+YTAVTRA++ + + + + I+ ER + L Sbjct: 678 IVILPLFSGPTVLLSRNLLYTAVTRAKKMVIIVGNRETIRKMISNNKEVERDTSLLHHLR 737 Query: 606 S 606 S Sbjct: 738 S 738 >UniRef50_C3RPY6 Exonuclease V subunit alpha n=1 Tax=Mollicutes bacterium D7 RepID=C3RPY6_9MOLU Length = 737 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 155/603 (25%), Positives = 249/603 (41%), Gaps = 103/603 (17%) Query: 28 AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLA 87 D++ + L GHV + L +++ + LAT E+ ++ +E + Sbjct: 215 CIDDNRLFAGIISSLKSIRNRGHVYINLD---SSDYNLLNLATQKLEV-DISYIKEAIFK 270 Query: 88 SQAVSRGDEPTPMILCGDR---LYLNRMWCNERTVARFFNEV---NHAIEVDEALLAQTL 141 Q E +I + +Y+ +M+ E+ V++ ++ + + D+ + + Sbjct: 271 LQ-----KEEKIVITNYNNYKIVYMRKMYDAEQNVSKLCAKLVSNSKLKKRDKNRIHHYI 325 Query: 142 DKLFPV-SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR 200 D + QK A AL+ S+ISG PG+GKTT + + + + RI Sbjct: 326 DNYEENHFKLADKQKEAIESALSNTFSIISGPPGSGKTTIIDVICSYFK--YYNKNIRIN 383 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHHAG 258 L APT KAA R+ +S G AST+HRLL P G +++ Sbjct: 384 LCAPTAKAAKRMFDSTGI-----------------QASTIHRLLEFNPADGEGGFKYNEY 426 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDH-ARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL D+LVVDE SM+DL M L+ A+P+ +IF+GD +QL SV+AG VL D+ Sbjct: 427 NPLKTDILVVDEFSMVDLLMTENLLKAIPETITALIFVGDINQLPSVDAGRVLEDMLQ-- 484 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 + +P+ LL K YR DS + L A++ Sbjct: 485 -----------------SKIPS-------------TLLNKIYRQQEDSTL--LQKALDFS 512 Query: 378 DKTAVKTVFQQDFTDI-EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 + +++ +DF EK L E + + + YG Sbjct: 513 KEKSIELADTKDFFFYSEKNELAIQEGVVNLFISEVEKYG------------------IE 554 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQK----RKIHRHPHSRWYEGRPVMIARNDSALG 492 LL EG FGV LN I+ + K R ++ G V+ N+ Sbjct: 555 NVALLIPQNEGTFGVNTLNCLIQDKLNPKLFDTTPELRSGSRKFRIGDRVIHTVNEDNHN 614 Query: 493 LFNGDIGIALDRGQGTR-------VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 +FNG +G D G + + + + R + +AMT+HKSQGSE Sbjct: 615 VFNGMVGTITDIEIGDKDFDTEDTIIVDYGEDELSEYHRDRFDNIKLAYAMTIHKSQGSE 674 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAALF 604 + +IL ++T++LVYT +TRA+ L L DE ++ A+ R S L L Sbjct: 675 YKSVIMILHMANRFMLTKKLVYTGMTRAKSYLHLVGDEYAVNYAMKRNIPPRNSRLDILL 734 Query: 605 SSR 607 + Sbjct: 735 KTI 737 >UniRef50_C6VR87 Exodeoxyribonuclease V, alpha chain n=44 Tax=Bacilli RepID=C6VR87_LACPJ Length = 849 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 160/635 (25%), Positives = 249/635 (39%), Gaps = 114/635 (17%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHD----AGEGHVCLPLSRLENNE 62 L+E ++ + D Q A + D L AALL+ G Sbjct: 205 LVEDIKGVGFKKAD-QIAAQLKIDPQADDRLKAALLTEINELCVENGDTY---------T 254 Query: 63 ASHPLLATCVSEIGELQNWE--ECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 + PLL + + +N + LA Q V E ++ +R+YL ++ E VA Sbjct: 255 TAQPLLNQTLQLLENARNVQIDPSKLADQLVVLAKENK-IVGDENRIYLRGLYEAEWRVA 313 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEI------NWQKVAAAVALTRRISVISGGPG 174 + A + DE L + +D Q A A+T + +++GGPG Sbjct: 314 EHLQRLL-AADNDEKLSERAVDHAIEHVGRASNITYDESQTEALKAAITAPVFLLTGGPG 372 Query: 175 TGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 TGKTT + L+A ++ D + I LAAPTG+AA R+ E+ G Sbjct: 373 TGKTTIIRGLVALYAELHDVALDINQYKDKPFPILLAAPTGRAAKRMAETTG-------- 424 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 AST+HRLLG G + L +L++DE SM+D + +L+ A Sbjct: 425 ---------LPASTIHRLLGLT-GREDGPEEPSKELDGGLLIIDEMSMVDTVLFQQLLTA 474 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 +P H +VI +GD+DQL SV AG V D+ ++ Sbjct: 475 IPSHMQVILVGDKDQLPSVGAGQVFHDLLQFSELPQ------------------------ 510 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L YR G+DS I LA AI G A V Q D + I Q Sbjct: 511 -------IELTTIYRQGNDSSIIPLAHAIKDGHLPADFAVNQPDRSFIACNAYQ------ 557 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 ++ + ARA+ + E Q+L + G G+ LN +++ Sbjct: 558 ---------VNHIVEQVVARAKAKGF--SAEEVQILAPMYRGTAGIDQLNTTVQKIFNPL 606 Query: 466 RKIHR----HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG---------QGTRVWF 512 + H+ + + G V+ N +FNGDIG + + ++ Sbjct: 607 KSAHQKHLTYNGQDFRVGDKVLHLVNSPEDNVFNGDIGKIVGIDLANDSHNESKKDQITI 666 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 A D N + Q + ++M++HKSQGS+F L L Q ++ R L+YTAVTR Sbjct: 667 AF-DQNEVTYQRNEWNRLTLAYSMSIHKSQGSQFKMVILPLVPQFARMLQRNLLYTAVTR 725 Query: 573 ARRRLSLYADERILSAAIATR-TERRSGLAALFSS 606 A + L L D + ++ R++ L Sbjct: 726 AEQMLILLGDSQSFERSVTNESVNRQTTLTKRLQQ 760 >UniRef50_C4GL20 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GL20_9NEIS Length = 567 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 188/521 (36%), Positives = 261/521 (50%), Gaps = 34/521 (6%) Query: 95 DEPTPMILCGDRLYLNRMWCNERTVARFFNEV-NHAIEVDEALLAQTLDKLFPVSDEINW 153 D +P++L G RL++ + W E+ +A + H E LA+ L F D Sbjct: 71 DASSPVVLHGRRLFIAKYWHLEKQLAAEIQRLSAHTPRQPEKPLAELLANWF-ADDTSRD 129 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 Q+ AAA+AL + +ISGGPGTGKTTTVAKLLA L + R L APTGKAAARLT Sbjct: 130 QRAAAALALLKNFVLISGGPGTGKTTTVAKLLALLHRQ---PAPRTALVAPTGKAAARLT 186 Query: 214 ESLGKALRQLPLTDEQKKRI--PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 ESL +A +P D + +R T+HRLLG +P + +HA NPL LD +++DEA Sbjct: 187 ESLHRASAAIPDLDAEAQRYLASLTGQTVHRLLGLKPPQMQPEYHAHNPLPLDCVLIDEA 246 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+D ++ +L+ ALP H RVI LGD DQL SV AGAVL + N E L + Sbjct: 247 SMMDNHLLYQLLAALPSHCRVILLGDADQLPSVGAGAVLDAL--SHNHQMQPETTTALRQ 304 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 L +L + L S+RF + SGIG LA A+ +G +A + Sbjct: 305 LLPDV------EHFPTLAEQHARLTISHRFHAQSGIGNLARAVQQGSASAWHAI-----A 353 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 + L + A++ + + Y ++A + +L ALR Sbjct: 354 EHPNELFAQPRNLAALVAQLYQHHTAYWQAIRAG-NLAAAFAEQSRLIVLTALRH---DA 409 Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGT 508 +N +QQ H P S WY G+ +MI RN + L+NGDIGI + + G Sbjct: 410 EHINNLYRTLLQQHG--HTRPQSPWYAGQIIMITRNAPSQQLYNGDIGIIMQPENDGNDL 467 Query: 509 RVWFAMPDGN---IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 R F N +S+ SRLPEHET +A+T HKSQGSE++ P+Q +R L Sbjct: 468 RACFPSESANGSGYRSIPLSRLPEHETAYAITTHKSQGSEYEQVWFAAPAQAPY--SRAL 525 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 +YTA+TRA+++ + DE AA A R S L Sbjct: 526 LYTAITRAKQQFVYWGDEAGFQAACAHNEHRNSALGMFLKE 566 >UniRef50_B5JHU9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHU9_9BACT Length = 564 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 179/566 (31%), Positives = 267/566 (47%), Gaps = 59/566 (10%) Query: 47 GEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP--TPMILC- 103 EGH L S P +L +WE+ L S + P++LC Sbjct: 51 REGHAFFDLGLPRGAGVSLP------RSWPDLSHWEKILANSPVARSETDAGCKPLVLCS 104 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALT 163 G LYL + + E+++A+ + +E A A Sbjct: 105 GTALYLEKYYAFEQSLAKLIAQRCEPDSTEEI-------------------AEPAERAAK 145 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQ 222 R+ VI+GGPGTGKTT + L L+ + R APTGKAAARL ES+ + + Sbjct: 146 RKFFVITGGPGTGKTTLALRYLNTLLDKWELSRPPRFAAIAPTGKAAARLAESIASGVAR 205 Query: 223 LPL-TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 L L +D ++ + T+HRLLGA P R ++ +PL D LV+DE+SMIDLP+M R Sbjct: 206 LELASDREEALLGIPCLTIHRLLGALPHRTSFRKNSRHPLRFDTLVIDESSMIDLPLMLR 265 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L +ALP +V+ LGD+DQL+SV+ G+VL D+ A + Sbjct: 266 LFEALPSDCQVLLLGDKDQLSSVDVGSVLADMLAASEL---------------------- 303 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 E + L S+ L K+YRF DSGI Q GD + D E L+ Sbjct: 304 --EGSPLSSSVLRLTKTYRFSEDSGIYQACQLARDGDSEGFSEMLDSGREDFEFHALR-- 359 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 +D + + AL+ + P+ + A NE L R G FG N +E+ Sbjct: 360 DDAKRIPKAALSRSFLRYKGIANSTTPEEGLLALNEGITLTPTRRGAFGSLEFNRLVERM 419 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTR-VWFAMPDGNI 519 ++Q++ + G P+++ ND L L+NGD+G+ +D G +F DG Sbjct: 420 IRQEQNLDPLSTQSI-HGAPIIVLENDYELELYNGDLGLVWIDEISGIAFAFFGGADGVT 478 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + + S LP HE+ +A+T+HKSQGSEF + + +TRELVYTA +RA+ RL + Sbjct: 479 RKFRLSELPRHESAFALTIHKSQGSEFLETVCLFAPEADRNLTRELVYTAFSRAKERLVV 538 Query: 580 YADERILSAAIATRTERRSGLAALFS 605 +A++ LS+AI + R + LA L + Sbjct: 539 FAEKTTLSSAIGRQAFRATRLAELLA 564 >UniRef50_C6HV36 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV36_9BACT Length = 578 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 173/605 (28%), Positives = 268/605 (44%), Gaps = 77/605 (12%) Query: 10 AVEHKQLRPLDVQFALTVAGDEHP-------AVTLAAALLSHDAGEGHVCLPLSRLENNE 62 A+ ++L +D A T+ P + L L S EGH L +E Sbjct: 22 ALTLERLAFVDRALAGTLLRLGAPRDSTSADVLALGTVLASSAPREGHTLFDL----GSE 77 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQ-AVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + + WE L + V R + P P+++ G LYL R W E VAR Sbjct: 78 QEPFPPLPLPPSLPPRREWEALLSSLPSVVGRPEAPAPLVVEGGGLYLYRYWRAEVRVAR 137 Query: 122 FFNEVNHAIEVDEAL-----LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + A E +E++ + L+++FP + + + AA AL R+ V++GGPGTG Sbjct: 138 LLADRL-AGEREESVGEGTSRERLLEEIFPEAGGAS--RTAALAALGSRLLVLTGGPGTG 194 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KT T A+ L+ R+ AAPTGKAAAR+ E+L + + Sbjct: 195 KTWTAAR--LLLLFRRLVPGIRVVSAAPTGKAAARMGEAL---------AEVLPPELAVP 243 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 + TLHRLLGA R G L D++++DE SM+DL +M L+ AL R++ +G Sbjct: 244 SMTLHRLLGASLRGIAPRR--GEFLPWDLVLLDELSMVDLLLMESLLSALSPRTRLVLVG 301 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D+DQL+ V AGAV+GD+C +A + + L +L Sbjct: 302 DQDQLSPVGAGAVMGDLCRALSA------------------------QEKGVPRGLVVLS 337 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 ++YR + + + + GD +F++ D+ + G ++E Sbjct: 338 RNYRQRESGLLQEFSRKVAEGDGEGALRLFERGDPDLVFAPVAEGWPENLLVE------- 390 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW 476 L + ++ + L R+GP G + +E+ + R + Sbjct: 391 -GFSPLATSSSDGEALERLGGFMALSPFRDGPMGALRGSRHLERVFSRLR-----GSRGF 444 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRL-PEHETTWA 535 P MI +N GL NGD+GI G R+ FA P ++ P R+ P ET + Sbjct: 445 RA--PAMILQNSYDTGLMNGDLGIL----SGERLVFAAPGRPEPAILPLRMAPPWETAFV 498 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE 595 MTVHKSQGSEFD L+L + P++TR L+YTA TRA++ L ++A + + Sbjct: 499 MTVHKSQGSEFDRVCLLLGGELHPLLTRRLLYTAATRAKKGLVVWASPESFLSMVRLSPA 558 Query: 596 RRSGL 600 R SGL Sbjct: 559 RSSGL 563 >UniRef50_Q6FF15 Exonuclease V, alpha subunit n=11 Tax=Acinetobacter RepID=Q6FF15_ACIAD Length = 592 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 177/542 (32%), Positives = 265/542 (48%), Gaps = 80/542 (14%) Query: 96 EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQK 155 + PMI G+ L L R W E+ +A ++ + + + LD L Q+ Sbjct: 78 QVAPMIYDGELLALYRYWMLEQRLAIQVVRLSQQV-IPPVEVMPHLDLLTD-----PHQQ 131 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 A ++ T+ S+I+GGPGTGKT T+A+++A L Q RI +AAPTGKAA R+ E+ Sbjct: 132 AAMSMVATQAFSLITGGPGTGKTYTLARIIAVLNQAI--PNIRIAMAAPTGKAAQRMQEA 189 Query: 216 LGKALRQLPLTDE---QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 L + LT + + TLHRLLG Q R HA PL DV+VVDEAS Sbjct: 190 LQASFNDEKLTASGLLSHELKQQTTQTLHRLLGL-GHQQLPRFHAKQPLPYDVIVVDEAS 248 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DL + + L +A+P R+I LGD +QLASV+ G+VL D+ Sbjct: 249 MLDLKLATLLFEAVPAGCRLILLGDANQLASVDVGSVLADL------------------- 289 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN----------------- 375 + +L + L S RF + IG+ A I Sbjct: 290 ----------QQVEALEQNRVNLVTSRRFREGAKIGEFAQFIQCLDVTWDPQQILHEFEH 339 Query: 376 -----RGDKTAVKTVFQQDFTDIEKRLLQSG-EDYIAMLEEALAGYGRYLDLLQ------ 423 + + + D +E + E ++ + G+ + L+ Sbjct: 340 QIAVPQALQPVSLLHDRDDMVQLEYLPPKVNLEHLTPYYQKLMQGFETFAQQLKHYRLHD 399 Query: 424 -ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 A +E +IQAF++Y++L A+R G FG+ +N+ +EQ++ Q I P WY GRPV Sbjct: 400 YAESEVAAVIQAFDDYRILVAIRFGDFGLEHINKMVEQWLTQYLGIL--PVGGWYIGRPV 457 Query: 483 MIARNDSALGLFNGDIGIALD---RGQGTRVWFAMPDGNIKSVQPSRLP-EHETTWAMTV 538 M+ ND LGL NGDIGI + V+F D K + +RLP +T +A+T+ Sbjct: 458 MMTYNDYQLGLSNGDIGICFRHRTQYDQFEVYFPSLD---KWIAANRLPKNIQTAFALTI 514 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF H A++ V+++EL+YTA+TRA++ +SL D+ L ++ RT R+S Sbjct: 515 HKSQGSEFRHTAIVFDHMAQKVLSQELIYTAITRAKQAVSLLVDQDALLQSLIIRTTRKS 574 Query: 599 GL 600 GL Sbjct: 575 GL 576 >UniRef50_A8VTZ2 Exodeoxyribonuclease V n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTZ2_9BACI Length = 766 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 145/632 (22%), Positives = 238/632 (37%), Gaps = 104/632 (16%) Query: 7 LLEAVEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L+E +E + D + LTV + L L GH + + L Sbjct: 196 LVEDIEGIGFQKADQIGRKQGLTVNHGDRLKAGLLFCLQEETFSNGHTYIEATELL---- 251 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 +LA + G + +E L+ Q + +E + R ++ ++ ER + Sbjct: 252 ---VLADQLLSAGVTEPIDESSLSQQLL-ELEEEDKIRYENGRCFVPSLYHAERGIVTHM 307 Query: 124 NEVNHAIE-VDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISGGPGTGK 177 + + + +E VD+ A+ L V +E+ Q+ A L + +++GGPGTGK Sbjct: 308 DRLLNRMEQVDQFPEAEIYKALGEVEEELGITYAESQREAVFTGLHSPVMILTGGPGTGK 367 Query: 178 TTTVAKLLAALIQMA-----------DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 TT + ++ ++ I +AAPTG+AA R+TES G Sbjct: 368 TTVIEGIVKVFGRLKGVSVDPAEYGKKDGPFPIVMAAPTGRAAKRMTESTG--------- 418 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 AST+HRLLG + ++ +P+ ++L++DE SM+D +M++L+ A Sbjct: 419 --------LPASTIHRLLGYKGENEGYFEKDDDDPIDGELLIIDEVSMVDTWLMNQLLKA 470 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 P +VIF+GD DQL SV G VL D+ A Sbjct: 471 TPTWMQVIFVGDEDQLPSVGPGQVLEDLLA------------------------------ 500 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 S L +R S I + I Q + + Sbjct: 501 -SDAAPNVRLVDIFRQEEGSRIIDFSHQIKESRLPPEGIDTSNKDLRFFPCQTQGVQTIV 559 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 + E G + + Q+L + +G GV LN ++ K Sbjct: 560 RQVCEGAVKKGYH----------------ARDIQVLAPMYKGEAGVDALNVMLQNLFNPK 603 Query: 466 RKIHR---HPHSRWYEGRPVMIARNDSALGLFNGDIG----IALDRGQGTRVW--FAMPD 516 R+ R + G V+ ND +FNGD G I + +V + Sbjct: 604 RERVREVQFGEVTYRVGDMVLQLINDPENNVFNGDRGEIVSIIRAKETVEKVMKITISFN 663 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 G + + L + T+HKSQGSEF + + ++ ++L+YT TRA+ Sbjct: 664 GEEVDYERNDLNMITHAYCCTIHKSQGSEFPIVVMPVVKSYWRMLRKKLIYTGATRAKGY 723 Query: 577 LSLYADERILSAAIAT--RTERRSGLAALFSS 606 L L + L A+ T T RR+ L S Sbjct: 724 LILCGEWDALEKAVVTGEETLRRTTLKERLLS 755 >UniRef50_Q0BMQ9 Exodeoxyribonuclease V n=20 Tax=Francisella RepID=Q0BMQ9_FRATO Length = 622 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 181/605 (29%), Positives = 292/605 (48%), Gaps = 75/605 (12%) Query: 26 TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECL 85 + + + L H GH CL ++ + N + + Sbjct: 64 DLEQKSNEILFHILMKLMHVYSHGHSCLKIADISNKTIFASEQSNQSDAKVGFKMPSSDK 123 Query: 86 LASQAVSRGDEPTPMILCG--DRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDK 143 +AS + + P+ D LY+ R+W E +A F + + + +DK Sbjct: 124 IASILDNLNYDNLPIYFAKQYDSLYIKRLWNYENEIANFIKLKTIQNTQKDNRIEEVVDK 183 Query: 144 LFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 LF + EINWQK A +L S+ISGGPGTGKTTTVAKLL A+ QM + + RI L A Sbjct: 184 LFEPAGEINWQKQAVIKSLNYNFSIISGGPGTGKTTTVAKLLLAI-QMLNQNQQRIALLA 242 Query: 204 PTGKAAARLTESLGKALRQL----------------------PLTDEQKKRIPEDASTLH 241 PTGKAA R+TESL L + L + +A T+H Sbjct: 243 PTGKAAQRMTESLKNTLATVIPSSLTTESTIQKNDIFKQVQDELNSVAQYLNNLEAQTIH 302 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 R LG +P S ++++ + DV++VDEASM+D+ + +LI A+ D+ ++I +GD +QL Sbjct: 303 RFLGLRPNSTYVKYNQQSKAPFDVIIVDEASMLDMNIFIKLIRAVADNTKLILIGDTNQL 362 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SVEAG++L + T + S+ LL K+YR Sbjct: 363 PSVEAGSLLANF---------------------------THDKYGSITPYTTLLIKNYR- 394 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 S I LAA++ +GD + Q +I+ L++ + Y+ Y + Sbjct: 395 -SQQYINNLAASVLKGDV----NIDSQQNENIKFHSLRNLDIYLR-------EYAKRYSQ 442 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 L+ + + N++++L A + G LN++IE+FM + P Y+G+P Sbjct: 443 LEKCRDYKEALTELNKFRILVANKNLEIGTDKLNQKIEKFMSK-------PIDSNYKGKP 495 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 +MI +N +LGLFNGD+GI G R +F D K+ + LP++E+ +AMT+HK Sbjct: 496 IMITQNSYSLGLFNGDVGIMWPDDTGKLRAYFDGKD--AKAFSLNMLPKYESVYAMTIHK 553 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 +QGSEFD +ILP++ ++++L+YTA+TRA+ +L++ +++ L +R S + Sbjct: 554 TQGSEFDEIVIILPAEDNEALSKQLLYTAITRAKYKLTIISEQSSLRDIAQKDIKRNSNI 613 Query: 601 AALFS 605 + L S Sbjct: 614 SELVS 618 >UniRef50_Q03EZ9 ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EZ9_PEDPA Length = 814 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 123/539 (22%), Positives = 217/539 (40%), Gaps = 87/539 (16%) Query: 88 SQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPV 147 + V + + ++ ++YL ++ E ++ + + + + + Sbjct: 280 ADQVLQLGKDGKVVGEDGQIYLKWLYNAEVAISYNVKRMVGESNSNVKGIKRAIKAAEKN 339 Query: 148 SD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GER 196 + + Q A +AL+ +++I+GGPGTGKTT V L+ + ++ D + Sbjct: 340 LNLKYDDTQNAAIELALSHPLTIITGGPGTGKTTIVKGLINSFAELNDISLDINEYTESK 399 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHH 256 I+LAAPTG+AA RL++ A T+HRLLG G+ L++ Sbjct: 400 FPIQLAAPTGRAAKRLSQVTN-----------------VPAKTIHRLLGLN-GNDDLQND 441 Query: 257 AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY 316 L D+LV+DE SM+D + S L++A+ +V+ +GD+DQL SV G + D+ Sbjct: 442 EIKQLEGDLLVIDEMSMVDTGLFSTLVNAINPDMQVVLVGDKDQLPSVGPGQIFNDLIKS 501 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 L K YR DS I QLA I + Sbjct: 502 GKIP-------------------------------TISLTKIYRQEQDSSIIQLAHDIQK 530 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 G T ++D + Q + + ++A+ N Sbjct: 531 GVLPEDFTKNKKDKSFFLANANQIVDAIDQIAQKAVDKGISK-----------------N 573 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQ----KRKIHRHPHSRWYEGRPVMIARNDSALG 492 + Q+L + G GV +N +++ + K K + + G V+ N Sbjct: 574 DIQVLAPMYRGSAGVDEINRHLQKVLNPPQTDKPKKIESGNQTFRIGDKVLQLVNSPENN 633 Query: 493 LFNGDIG-----IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 +FNGDIG + +G+G DGN + + L + + +++HKSQGSEF Sbjct: 634 IFNGDIGEITGIVMEKQGKGRAHLVVDYDGNEVTYAKTDLGQLTLAYCISIHKSQGSEFP 693 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAALFS 605 + + Q ++ R L+YT +TRA + L + A++ + R + L + Sbjct: 694 VVIMPMVHQYYRMLQRNLLYTGLTRASNSIILLGEPDAYQRAVSNESSNRNTSLERRIN 752 >UniRef50_Q1WTZ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Lactobacillus salivarius RepID=Q1WTZ7_LACS1 Length = 824 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 136/592 (22%), Positives = 217/592 (36%), Gaps = 119/592 (20%) Query: 49 GHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLY 108 G+ + L+ L LL + +E + Q + L+ + E + +++Y Sbjct: 245 GNTYVELNPLVTETLK--LLESNRNEAIDPQLVADQLI------KLTEEDKIKSDDNKVY 296 Query: 109 LNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS------DEINWQKVAAAVAL 162 + E +A + + D LDKL + D + QK A A+ Sbjct: 297 SRTFFNAEWNIAENLYRLLKSGNSDLPNNDALLDKLLIKAEDQLGIDYDSEQKRAIKDAI 356 Query: 163 TRRIS------------VISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAA 203 + +I+G + + A L + I LAA Sbjct: 357 KSPVFLLTGGPGTGKTTIING---------IVAVYALLNDIDLDIGKYDKDNPFPILLAA 407 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL 263 PTG+AA R+ ES G AST+HR+LG +L L Sbjct: 408 PTGRAAKRMAESTG-----------------LPASTIHRMLGINAHDDKLPED-IQELEG 449 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 +L+VDE SM+D +M L++++P H +VIF+GDR+QL SV+ G V D+ Sbjct: 450 ALLIVDETSMVDTLIMDLLLNSIPSHMQVIFVGDRNQLPSVQPGQVFSDL---------- 499 Query: 324 ERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVK 383 L +P L K YR G S I LA +I G+ A Sbjct: 500 --------LVSDALPKKE-------------LTKIYRQGEGSSIINLAHSIKNGELPADF 538 Query: 384 TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCA 443 T Q D I Q +++ AL ++ Q+L Sbjct: 539 TKAQSDRAFIPCEAGQLTSAVEQVVKAALNKGNSK-----------------DDIQVLAP 581 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHR---HPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 + G G+ LN +++ + + + G V+ ND +FNGDIG Sbjct: 582 MYRGNVGINRLNTILQELLNPANPRQKEVIFNEQVFRIGDRVLHLVNDPENNVFNGDIGK 641 Query: 501 AL-------DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 + + + A DGN + + M++HKSQGSEF L + Sbjct: 642 IVGINIPKTKKDKKGEQIIADFDGNEVTFDKKDWINLTLAYCMSIHKSQGSEFPIVVLAM 701 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA-TRTERRSGLAALF 604 Q + R L+YT +TRA+++L L + + R++GL Sbjct: 702 LPQYQRMFARNLLYTGITRAKQKLVLLGNVSSFRQSAEIISLNRKTGLLKRI 753 >UniRef50_Q8NW86 MW1569 protein n=68 Tax=Bacillales RepID=Q8NW86_STAAW Length = 825 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 134/630 (21%), Positives = 243/630 (38%), Gaps = 105/630 (16%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLSRLENN 61 QL+ ++ D Q A + + L AALL +GH LP++ + Sbjct: 194 QLIYDIKGIGFNKAD-QLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINVVI-- 250 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + + +L E+ E + +E L +E +I+ +++ + ++ +E + Sbjct: 251 DLTVDVLNYQDEEVIEPEKLDEMLQY------LNEEKRLIIDNEQVAIPSLYYSEIKSVQ 304 Query: 122 FFNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGGPGT 175 + + L ++ N QK A A+ ++ +++GGPGT Sbjct: 305 NLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGT 364 Query: 176 GKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 GKTT + ++ ++ + + LAAPTG+A+ RL ES G Sbjct: 365 GKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTG--------- 415 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 +A T+HRL+G + + N ++ ++++DE SM+D + + + A+ Sbjct: 416 --------LEAMTIHRLIGWNQDT-KPEDILENEINARLIIIDEMSMVDTWLFHQFLSAV 466 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 P A++IF+GD DQL SV G V D+ Sbjct: 467 PLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPR------------------------- 501 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L + YR S I +LA + G K + F D + I + Q Sbjct: 502 ------VNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRF-HDRSFINCQANQIPTVVEK 554 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 ++ A+ + Q+L + +G G+ LN+ ++ + K+ Sbjct: 555 VVTSAVNK-----------------GYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKK 597 Query: 467 KIHR---HPHSRWYEGRPVMIARNDSALGLFNGDIGIAL------DRGQGTRVWFAMPDG 517 K R + +G V+ N +FNGDIG+ + + V +G Sbjct: 598 KDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVVDFEG 657 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 N + + E + ++HKSQGSEF + + Q ++ R ++YT +TRA+ L Sbjct: 658 NEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKMSL 717 Query: 578 SLYADERILSAAIATRTE-RRSGLAALFSS 606 L D + T + R + L L + Sbjct: 718 VLLGDPEAFDIGLKTNGQARLTQLCTLLKN 747 >UniRef50_D0BKH5 Helicase, RecD/TraA family n=2 Tax=Granulicatella RepID=D0BKH5_9LACT Length = 845 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 143/636 (22%), Positives = 243/636 (38%), Gaps = 122/636 (19%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAG--EGHVCLPLSRLENNEA 63 LL+++E R +D + L +A D + A ++ D EGH L + A Sbjct: 190 LLQSIEGLGFRRIDAIAQQLEIAADSLYRIKGAVYVVVRDLSYQEGHTYLIDKEVV--LA 247 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + LL S + E L ++ + G +I + L L ++ E + Sbjct: 248 AQKLLEQTRSFLIEPDQIVNAL--NELIREG----IIISEENHLSLASLYYAEIGIVNAI 301 Query: 124 NEV------NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISV--------- 168 + +H E D Q + K F + + + QK A + + + Sbjct: 302 HHRLELSKKSHYSEEDIEEAIQHVQKKFGIIYD-DSQKQALIKIMQESLFILTGGPGTGK 360 Query: 169 ---ISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 I+G V ++ L ++ D + I+LAAPTG+AA R+ E G + Sbjct: 361 TTIING---------VVEMYRYLEEI-DVDSDAIQLAAPTGRAAKRMNELTGIS------ 404 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGS----QRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 AST+HR+LG + L D L++DE SM+D +M+R Sbjct: 405 -----------ASTIHRMLGISAEENVELESDDSDDTRSLSCDFLIIDEMSMVDTWLMNR 453 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L+ A P +++F+GD++QL SV G VL D L +P+ Sbjct: 454 LLRATPGKTKILFVGDKNQLPSVGPGQVLTDF------------------LLSNKIPS-- 493 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 L +R S I LA +I G T Q D T I R Q Sbjct: 494 -----------IELTHIHRQKDSSSIVTLAHSIKDGHLPMDFTQNQPDRTFIPCRSTQIL 542 Query: 402 EDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 + ++ +A+ GY + + Q+L + +G G+ +N+ ++ Sbjct: 543 DVIEQIVVKAIKKGYQK------------------KDIQVLAPMYKGEAGIHEINKMMQN 584 Query: 461 FMQQKR----KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG----IALDRGQGTRV-- 510 + K + + G V+ N + ++NGDIG I + +V Sbjct: 585 ILNPKIGNSVREIESFDRVFRVGDKVLQLVNVAEENIYNGDIGEVTAIIFAKENEDQVDK 644 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 + D + + + + ++HKSQGSEF L + Q ++ R L+YTAV Sbjct: 645 LYVAFDNVEVEYKRNDFIQLTHAYCCSIHKSQGSEFQMVILPMVGQYQRMLERNLLYTAV 704 Query: 571 TRARRRLSLYADERILSAAIATRTERR-SGLAALFS 605 TR+++ L + A ++ RR + L L Sbjct: 705 TRSKKFLIMCGQYEAFQEAANRQSARRQTCLKDLLQ 740 >UniRef50_C0DUX7 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DUX7_EIKCO Length = 588 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 196/586 (33%), Positives = 281/586 (47%), Gaps = 41/586 (6%) Query: 25 LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEEC 84 +A V L GH + L+ Q E Sbjct: 38 QRLAPQTAEPVLPLLDELFAAQEGGHSYITLA---------------------PQEAEAL 76 Query: 85 LLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLAQTLD 142 A+ V G TP++L G RL+ R++ ER+VA + H + A L Q L Sbjct: 77 RQAAPVVGDGGAFTPLVLRGRRLFSGRLFALERSVAAELQRIAHNRVRLPENAGLRQRLR 136 Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 FP + N Q++AAA+A+ + + +++GGPGTGKTTTVAKLLA L A E RI L Sbjct: 137 DWFPDAGH-NGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALLCADAV-EMPRIALT 194 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQ--KKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 APTGKAAA +T SL +AL + EQ + + T+HRLL P + + P Sbjct: 195 APTGKAAAHMTRSLHRALSSFKVGSEQVLQHLTVLEGQTVHRLLKLNPVVGYSKFNREQP 254 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 L D++V DEASM+DLP++ +L+ A+P+H R+I LGD +QL V GAVL + Sbjct: 255 LPFDIVVADEASMLDLPLLHQLLCAIPEHGRLILLGDENQLPPVGIGAVLPVL--AQPTV 312 Query: 321 FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 TA+ A QL+ VP L ++ L+ S+RF G+G LA A+ G+ Sbjct: 313 LTAKEAAQLAEWLPEGVPFEVRDNPPPLAGNVARLEYSHRFDPQRGVGALAQAVVNGEAA 372 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 A + F + FTD RL ++ + Y + ++ +P A + + Sbjct: 373 AAEAAFAR-FTDDLFRLPETPAALARHFTKQYEAYWQAVN----SGDPAACFSAQQQLVV 427 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L A R N + + + R W+ G+ +M+A ND A+ +FNGDIGI Sbjct: 428 LAARRSQAA---EFNREYRKLLAAQG---RAAEQGWFAGQVLMVAENDYAVNVFNGDIGI 481 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L G G +F G ++V SRLP H+T +AMTVHKSQGSE+ L+ + + Sbjct: 482 VLPHGDGLAAFFPDA-GGFRAVSLSRLPAHDTAFAMTVHKSQGSEYQEVWLLGDEADSAL 540 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 R L+YTA+TRARRR L AA+ + RR+GL S Sbjct: 541 FDRTLLYTAITRARRRFGYAGQMSALIAAVQRKNHRRTGLGEALQS 586 >UniRef50_Q8EPS6 Conjugation transfer protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPS6_OCEIH Length = 776 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 136/626 (21%), Positives = 232/626 (37%), Gaps = 105/626 (16%) Query: 10 AVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA-LLSHDAGEGHVCLPLSRLENNEASHPL 67 +E R D + +AG + +L GHV +PL Sbjct: 203 DIEGFGFRTADQIATQQGIAGTHESRIGAGIIFVLQRAIQSGHVYVPLRDCLEEVVDLLR 262 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 +AT EI S + + +I+ +++YL ++ E A + Sbjct: 263 IATSDIEI-----------VSFVFKQLNTAKKIIIIDEKVYLPSLYYAEDGFAANLKRIL 311 Query: 128 HAIEVDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + +A+ L + + +E Q A A+ ++ +++GGPGTGKTT + Sbjct: 312 DKPMEENIPMAEMLKIIGSIEEEEVLSYGKEQFDAINHAIHSKLMILTGGPGTGKTTVIK 371 Query: 183 KLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 +L A + L APTG+AA R+TES G Sbjct: 372 GILKAYASLQKVSLDPKDYKNKSDFPFVLTAPTGRAAKRMTESTGI-------------- 417 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A T+HRLLG G L +L+VDE SM+D+ + + L A+P +V Sbjct: 418 ---PAVTIHRLLGWN-GIGSFEKDEHEQLEGKLLIVDEFSMVDIWLANHLFKAIPADMQV 473 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV G VL D+ Sbjct: 474 LLVGDEDQLPSVGPGQVLTDLMHSNLLP-------------------------------T 502 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 LQ+ YR S I QLA I + + +A +DF+ I R Q E +++++A Sbjct: 503 VSLQEVYRQKEGSKIIQLAHEIKQDNCSANSLSNDRDFSFISCREPQMIEVISSVMKKAK 562 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIH 469 A N Q+L + G+ +N+ +++ + KR+ Sbjct: 563 AKGID-----------------LNNIQVLAPMYRSQAGINIINQELQKLINPPTEKRREI 605 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL------DRGQGTRVWFAMPDGNIKSVQ 523 + + G V+ N G++NGDIG + + + + Sbjct: 606 HYQDVIYRTGDRVIQLVNQPEDGVYNGDIGEIVAIFKPEENTEHEEQIVIAFEDREVVYI 665 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 + +++HKSQGSEF L + ++ + L+YTA+TR++ L + ++ Sbjct: 666 RKDYNNFTHAFCISIHKSQGSEFPIVLLPVVYAHHRMLRKNLLYTAITRSKESLIICGEQ 725 Query: 584 RILSAAIATR--TERRSGLAALFSSR 607 + T+ +R + L +R Sbjct: 726 PAFLKGVNTKDTNQRNTSLKDALVTR 751 >UniRef50_B7J7Z5 Helicase, RecD/TraA family n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J7Z5_ACIF2 Length = 711 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 135/564 (23%), Positives = 223/564 (39%), Gaps = 94/564 (16%) Query: 46 AGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGD 105 +GHV LL C +G Q E+ + Q + + + + Sbjct: 235 TEDGHV---------WTPEPTLLGLCKELLGVSQ--EKIVARIQVMQEAQQIATELGAPN 283 Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEIN-WQKVAAAVALTR 164 R R+ E ++A ++ FP + Q A R Sbjct: 284 RFASVRLSRMEISLAAKIRSLSGPAPKKTMR--------FPAGFVPDPTQIEALNQISDR 335 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 ++++++GGPG GKTT LL Q A R+ L APTG+AA R+ E+ G Sbjct: 336 KLAILAGGPGMGKTT----LLKTCAQSAVASGMRVALCAPTGRAAKRMNEATGM------ 385 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 +A T+HRLL + G R + NP+ D ++VDE SM+D+ + +L D Sbjct: 386 -----------EAKTIHRLLEMKRGGLAER-NRDNPIEADWIIVDEVSMLDMELAWKLFD 433 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 A+P ARV+ +GD DQL SV G VL D+ A Sbjct: 434 AIPARARVLLVGDPDQLPSVGPGQVLADLIACGKV------------------------- 468 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 ++ L K +R + SGI +A + +G + + + + E+ Sbjct: 469 ------TVARLSKIFRQQAGSGIPVMATQVIQGVVPNLDPDSSDCPFVDAECIGEESEEA 522 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 A++ + L + Q L +R GP G LN+ + + Sbjct: 523 TAVVVRRIVQESEKLG---------------SRMQALAPMRNGPLGTLKLNQALREAFNP 567 Query: 465 KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG--IALDRGQGTRVWFAMPDGNIKSV 522 R+ G V+ RN+ L ++NGD+G +A++ G V D ++ Sbjct: 568 DAGQPHRG--RFRLGDWVIQTRNNYDLDVYNGDLGTVVAIEEGDEQAVVVDFEDRVVRYE 625 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 L + + + +T+HKSQG +F A++ + ++ R L+YT +TRA + L L + Sbjct: 626 DNEDLRDLDHAYCLTIHKSQGGQFPGVAMVATTAHFVMLKRNLLYTGMTRAEKHLLLIST 685 Query: 583 ERILSAAIATR--TERRSGLAALF 604 +R L A +R + LA Sbjct: 686 KRALQIACKKSGIEKRDTLLAQRI 709 >UniRef50_D1BM66 Helicase, RecD/TraA family n=3 Tax=Veillonella RepID=D1BM66_VEIPT Length = 717 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 140/601 (23%), Positives = 243/601 (40%), Gaps = 100/601 (16%) Query: 23 FALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQ 79 A + + L A L L +GH CLP+ +L L +++ ++ Sbjct: 198 LAEHLGINGSDTRRLEAGLEWILRSLDNQGHTCLPVDQLIGR-----LDDLLQTDVDDIA 252 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF-----FNEVNHAIEVDE 134 N+ E LL A+ + +Y M+ +E + A+++ Sbjct: 253 NFIESLLEQGALYSTYYEDIL-----YIYPPEMYVSEVEGVHYTREFLLQADPIALDISS 307 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + D D QK A ++ + S+I+GGP T ++ AL++ Sbjct: 308 FIEKFERDNYITFGDA---QKEAIQLSFFEKFSLITGGP----GTGKTTIIKALVKGFQL 360 Query: 195 ERC-RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG--AQPGSQ 251 RI L APTG+AA RLTE+ +A+T+HRLL S Sbjct: 361 GGLGRIILCAPTGRAAKRLTEAT-----------------EFEATTIHRLLVPVQGSDSY 403 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 + +PL +DV+++DEASM+++ + L+ A+P A VI +GD DQL + AG VL Sbjct: 404 DFTKNEDDPLDIDVIIIDEASMLNVRLFYSLMAAIPKEAHVIIVGDVDQLPPIGAGFVLK 463 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 D+ +T L + YR S + I + A Sbjct: 464 DLLDSDCVPYT-------------------------------RLNQIYRQSSGNTIVESA 492 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI 431 AINRG+ ++ V ++F+ I + Y M++ + Y R + ++ Sbjct: 493 YAINRGEMPNLEGV-SEEFSFIP------VKSYDMMMKAIIDVYKREQETIEDEL----- 540 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARND 488 + Q++ +R G G +++ ++Q + + R + G V+ ND Sbjct: 541 -----DIQIISPMRRGEAGSTLISQYVQQAVNPPDSYKGEVRVNGITYRVGDKVIQILND 595 Query: 489 SALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 L +FNG+IG+ + T + ++ + +A+TVHKSQGSE+ Sbjct: 596 YELEVFNGEIGVIYAITR-TDICIRFIHKEVR-LPIDEAHMIMPAYAITVHKSQGSEYGV 653 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSS 606 + + ++ R L+YTAVTRA+R++ + + A+ T ER + Sbjct: 654 VIIPFVPRYGGMLQRNLLYTAVTRAKRKVIIVGTTSAVERAVRTVNADERYTLFKERLQG 713 Query: 607 R 607 R Sbjct: 714 R 714 >UniRef50_A0LD23 Helicase, RecD/TraA family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD23_MAGSM Length = 742 Score = 367 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 139/577 (24%), Positives = 225/577 (38%), Gaps = 93/577 (16%) Query: 45 DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAV---SRGDEPTPMI 101 EGH L R L ++ + E L Q G + +P + Sbjct: 240 ANNEGHTLLEEPRFHQQLTVLLALQGHQDQLNLVPMVLERLDLGQGPLVRVYGRDGSPFV 299 Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNHAIEVD---EALLAQTLDKLFPVSDEINWQKVAA 158 L R E+ +A + ++ ++ + + + F +S + Q+ A Sbjct: 300 Q------LTRYHDYEKQIAYHISRLHGPSPIETISDGWIERVSRGHFSLSVD---QRQAL 350 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 ++++++GGPG GKTT ++ + A + ++L APTG+AA +L E+ G Sbjct: 351 KTITQDKVAILTGGPGMGKTTITRYVI----EHAVENKQTVKLCAPTGRAAKQLAEATG- 405 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 E A T+HRL+G D+LVVDE+SM+D M Sbjct: 406 ----------------EVALTIHRLMGKGSDESV---DGQRKFECDLLVVDESSMMDEWM 446 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 S L+ LPDH R++ +GD DQL SV AG VL D+ Sbjct: 447 ASSLLQMLPDHCRLLLVGDADQLPSVAAGRVLQDLIQSGVVP------------------ 488 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 + L + +R SGI A I G + + +DF + Sbjct: 489 -------------VARLTEVHRQAEGSGIALGAVEILHGRRPQMA----RDFKFVA---- 527 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 +E R L+ + I A E Q++ + GV LNER+ Sbjct: 528 -----VTGGMEHLHQCANRMLEGIDKMMRVGGIDGA--EIQVITPMHGTEVGVKALNERL 580 Query: 459 EQFMQQKR---KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWF 512 + + + ++ + G +M +ND L LFNGD G ++ QG Sbjct: 581 HEQLNPYQAGQEVLELDGFAYRAGCRIMQTKNDYDLELFNGDQGEIVEISKDAQGELQVI 640 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 A D K + ++ +A+TVHKSQG +F++ + + ++ R L YT VTR Sbjct: 641 AKFDEAQKLLDREQMGNIVPCYAITVHKSQGGQFNYVVTPVVTAHGKMLYRNLFYTCVTR 700 Query: 573 ARRRLSLYADERILSAAIA--TRTERRSGLAALFSSR 607 AR+ + L L AI+ +R +GL + R Sbjct: 701 ARKGVVLVGSYEALVMAISYKENMQRNTGLLSRIEER 737 >UniRef50_C8PAU3 Exodeoxyribonuclease V alpha subunit n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAU3_9LACO Length = 780 Score = 367 bits (941), Expect = 1e-99, Method: Composition-based stats. Identities = 139/596 (23%), Positives = 244/596 (40%), Gaps = 102/596 (17%) Query: 28 AGDEHPAV-TLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLL 86 A D L LL +G+ L L+ + EL ++ L Sbjct: 212 ADDSRRLKGALMQVLLDSALKDGNTYL-------------LMDKWLENTSELLYIDDFDL 258 Query: 87 ASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL----- 141 + V+ + +++ D++ L M+ E+ +A ++ + + D L L Sbjct: 259 LANEVNNLKKDNKVVIFDDKVSLTNMYTIEKDIANDLKRISDSNKKDIPYLDDDLNSAIK 318 Query: 142 --DKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER--- 196 ++ F +S + + QK A AL IS+++GGPGTGKTT + +LA L ++ Sbjct: 319 HVEQKFDISYD-DTQKKAIKTALNNSISILTGGPGTGKTTIIRGILATLQEIEKIPNDVL 377 Query: 197 ----CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 LAAPTG+AA R++E G DA T+HRLLG G Sbjct: 378 YTDDPPFLLAAPTGRAAKRMSELTGI-----------------DAKTIHRLLGL--GISD 418 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 L N L+ ++L++DE SM+D+ + L+ ++ ++F+GD+DQL SV G + D Sbjct: 419 LNQENMNELNGEILIIDEMSMVDMFLFKNLVSSIFQLKHIVFVGDKDQLPSVGPGNIFSD 478 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 + A + L +R DS I LA Sbjct: 479 LIASSAFP-------------------------------TTKLSMIHRQSDDSSIVDLAH 507 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 IN+ + A +++ I + + +++ AL Sbjct: 508 KINQNNAQANIFTKTPNYSFISCKPNSIADAIEKIVDIALEKGF---------------- 551 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR---WYEGRPVMIARNDS 489 ++ Q+L A+ G G+ LN+ ++ M + + + G V+ +N+ Sbjct: 552 -CADDIQVLTAMYNGVSGINSLNDLLQNIMNPAKIDSKKVEVHNEFFRIGDRVLQLQNNP 610 Query: 490 ALGLFNGDIGIA--LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 ++NG IG +D Q + D + + L + +A+T+HKSQGSEF Sbjct: 611 EKEIYNGQIGKVVGIDDSQKSAKLIVRFDDREVMLTSNDLSDLTRAYAITIHKSQGSEFP 670 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAA 602 L L Q ++ + L+YT +TRA++ L + +E+ A+ T +R++ L + Sbjct: 671 LVILALTMQNYIMLKKNLLYTGITRAQQNLVMIGEEQAYQMALKTEGNDRQTDLCS 726 >UniRef50_B2I7Y3 Exodeoxyribonuclease V, alpha subunit n=10 Tax=Xanthomonadaceae RepID=B2I7Y3_XYLF2 Length = 639 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 231/630 (36%), Positives = 314/630 (49%), Gaps = 46/630 (7%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSR 57 M L L +A LR LD A ++ V AAAL S GH + L+ Sbjct: 1 MSLLAALNQA---GVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAH 57 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP-------TPMILCGDRLYLN 110 LLA + + W L AS+ V+ E P++L LYL Sbjct: 58 -------PGLLAGEMFDWPSAAEWVHLLRASRWVAEPSEGEAPAPTGQPLVLEQGVLYLR 110 Query: 111 RMWCNERTVARFFNEVNHA--IEVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRIS 167 R ER +A + A + A +A LFP + + Q +AAA+AL R + Sbjct: 111 RYREYERRLAIGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALAAALALQRALL 170 Query: 168 VISGGPGTGKTTTVAKLLAALIQMADGER---CRIRLAAPTGKAAARLTESLGKALRQLP 224 +++GGPGTGKTTT+A+LL + A + RI LAAPTG+AA R+ ESL A + Sbjct: 171 LVTGGPGTGKTTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVS 230 Query: 225 L---TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 +P AST+HRLLG P + R RH NPL DV+VVDEASM+DLP+M + Sbjct: 231 AAGGDAALFAALPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCK 290 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG--FTAERARQLSRLTG---TH 336 L+DA+ D ++I LGD DQL SVEAG VL I A A +G A+ L+ L G Sbjct: 291 LVDAVADGTQLILLGDPDQLPSVEAGDVLAGILAAAGSGEVLDVADAQVLAPLLGAPSAA 350 Query: 337 VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKR 396 V A L LQ S+R G D + LA A+ GD TAV + ++ R Sbjct: 351 VVAECHVVRGGLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGMLRRG----TLR 406 Query: 397 LLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE 456 +Q E + A + L A ++P + A +LL ALREGP G AG+N Sbjct: 407 GVQFHEGVLDPCVGAGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINA 466 Query: 457 RIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR-VWFAMP 515 RIE+ + ++ GR +++ S LFNGDIG+ L GT WF+ Sbjct: 467 RIERLL------GGGGVDGYFHGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGA 520 Query: 516 DGN-IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 G +++ P+ LP HE+ +AMTVHK+QGSEFD L LP Q + V++REL+YT +TRAR Sbjct: 521 GGEGVRAFAPAALPAHESAFAMTVHKAQGSEFDTVWLQLPRQESRVLSRELIYTGLTRAR 580 Query: 575 RRLSLYADERILSAAIATRTERRSGLAALF 604 L + E +L AA+A + R SGLA Sbjct: 581 HGLHVAGSESVLCAALARQAVRVSGLAWRL 610 >UniRef50_C4FTN2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTN2_9FIRM Length = 839 Score = 363 bits (933), Expect = 8e-99, Method: Composition-based stats. Identities = 156/612 (25%), Positives = 232/612 (37%), Gaps = 97/612 (15%) Query: 22 QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 81 A + + L A L + E VCL LAT + E Sbjct: 206 ALAEQLGIEADAVTRLVAGLYT-AVSE--VCLRSGDTYVQRPRLLALATKILERSRAYLI 262 Query: 82 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL 141 EE LA E T L + L ++ E + R ++ EV+ + Sbjct: 263 EEERLAEALDLAILEGTLYSLDQG-IMLPSLYHAEMGIVRRISDFFQYEEVETFSKTEIE 321 Query: 142 DKLFPVSDEI-----NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-- 194 DKL V+ E Q+ A +A+ +SVI+GGPGTGKTT + +L L ++ G Sbjct: 322 DKLDQVARETGINYDETQRQAMILAMQSPLSVITGGPGTGKTTLIRGIL-TLHRLLHGYH 380 Query: 195 --------ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 + + LAAPTG+AA R+ E AST+HRL+G Sbjct: 381 QGDLTNPYQTGPVLLAAPTGRAAKRMQEMTDI-----------------PASTIHRLIGF 423 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 + PL +LVVDE SM+D +M+ L A+ +VI +GD+ QL SV Sbjct: 424 NRETTVEGFDPT-PLEGQLLVVDEMSMVDTWLMNWLWMAIGYRIQVILVGDKHQLPSVGP 482 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G V D+ L K YR DS Sbjct: 483 GKVFSDLIESGVLP-------------------------------TISLTKIYRQAQDSS 511 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I QLA I +G Q D + I + Q + ++ AL Sbjct: 512 IIQLAHQIRQGRLPQNLMERQPDRSFIPCKTQQVAQVVEQVVGHALTR------------ 559 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVM 483 A N Q+L + +GP G+ LN+ ++ K+ + + G V+ Sbjct: 560 ----GFDA-NTLQVLAPMYKGPAGITALNQLLQGLFNPPSRKKPQLEYFDQIFRLGDKVL 614 Query: 484 IARNDSALGLFNGDIGIALD-------RGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 N++ G++NGDIG + V A D + + S + + Sbjct: 615 QLVNNAEEGVYNGDIGKIVGVFSAQASNSGSEEVVVAFDDDKELTYRRSDFDQLTLAYCC 674 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-RTE 595 +VHKSQGSE+ L L ++ ++L+YTAVTRA+ L L D A++ R Sbjct: 675 SVHKSQGSEYPLVILPLVDAYYRMLRQDLLYTAVTRAQSSLVLVGDPDAYVQAVSQDRDL 734 Query: 596 RRSGLAALFSSR 607 RR+ L L + Sbjct: 735 RRTNLKDLLEVK 746 >UniRef50_D1B8Y6 Helicase, RecD/TraA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Y6_THEAS Length = 715 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 146/612 (23%), Positives = 238/612 (38%), Gaps = 89/612 (14%) Query: 6 QLLEAVEHKQLRPLDV-QFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEA 63 QL V D + + D + + EGH LP L Sbjct: 182 QLAYDVAGIGFVTADRIAQRVGICRDAPERLDAGILFSMRRAVEEGHSMLPWDELLQRSR 241 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + + V + EL L A + +YL + E A Sbjct: 242 RLLAVDSGVEDRLELLCTLGMLEAEELGGL-----------RCVYLPGLRRAEAASAGAV 290 Query: 124 NEVNHA----IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 ++ + + + + L+ F + E Q+ A AL+ RI VI+GGPG T Sbjct: 291 RDMAASSGARLGWELEGMITALEGQFGIRLE-EPQRRAVKGALSHRIFVITGGPG----T 345 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 LL +++ R+ LAAPTG+AA R+ E +A T Sbjct: 346 GKTTLLRFTVRLCQMMGLRVLLAAPTGRAAKRMAEVTR-----------------VEAYT 388 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 LHR L P S R PL DV++VDE SM+DLPM RL+ + + A ++ +GD + Sbjct: 389 LHRALEYDPRSNRFGRGRSRPLEADVVIVDEFSMVDLPMFHRLLSGIGEDASLVLVGDSN 448 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL S+ G+VL D+ + + L++ + Sbjct: 449 QLPSIGPGSVLKDLISSGSVPK-------------------------------VELKEIF 477 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQ-DFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 R S I + + I G + + Q D +E ED ++ EA+ Sbjct: 478 RQAQRSLIIRNSYRILEGGTLELPPLSQGLDVAFVE-------EDDPSLAAEAV------ 524 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 +DL+ + + + Q+L + +G G L R+++ + + R + Sbjct: 525 VDLVGYEIPRCTGLSPW-DVQVLTPMHKGEAGARNLCLRLQEVLNPSGERLRRGEGGFRR 583 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 G V+ +ND L ++NGDIG+ GQ + +G ++ +A+T+ Sbjct: 584 GDKVIQLKNDYDLEIYNGDIGVV--EGQVDQGLLVDFEGRRVQIRREAEVNLALAYALTI 641 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TER 596 HKSQGSE+ + L Q ++ R L+YTA+TRA+R L R + A++T+ R Sbjct: 642 HKSQGSEYPAVVVPLLDQHFVMLKRNLLYTALTRAKRLAVLVGSRRAIERAVSTQEGNAR 701 Query: 597 RSGLAALFSSRE 608 L + RE Sbjct: 702 YGALRWRLAKRE 713 >UniRef50_C8NA26 Probable exonuclease V, alpha subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA26_9GAMM Length = 606 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 179/625 (28%), Positives = 271/625 (43%), Gaps = 90/625 (14%) Query: 38 AAALLSHDAG---EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRG 94 A L+ +G G + L L + +H T + + + L A+ ++ Sbjct: 4 LAHYLARQSGCPEHGSILADL--LTALQNAHDNGDTLIQLNDAQRAAADTLAATPLLADD 61 Query: 95 DEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQ 154 D P+ GDRL+++R + E +A E HA + + P Q Sbjct: 62 DRAAPLTRRGDRLWISRNYQQEARLAAMLRERLHAADTPAEPI--------PADGLRAEQ 113 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 + A +A +RR+++I+GGPGTGKT T+A+L+ A + + RI LAAPTGKAA R+ E Sbjct: 114 QNAIRLARSRRLALINGGPGTGKTYTIARLIHA--EQQADPKIRIALAAPTGKAAKRMEE 171 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 SL A Q A TLHRLLG Q R+H L D++++DEASM+ Sbjct: 172 SLAAAGVQ-----------DLPAQTLHRLLGIGTDGQ-ARYHMSRHLPHDLIIIDEASML 219 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC---AYANAGFTAERARQLSR 331 L + LI A R+I LGD DQLA+VE GA+L D+ A N T +++ Sbjct: 220 SLELAHALIAATATDTRLILLGDADQLAAVEPGAILHDLSHHPALQNHRITLRESQRFRA 279 Query: 332 LTGTH-----VPAGTGTEAASLRDSLCLLQK-------------------------SYRF 361 +G + G L ++L +K S+ F Sbjct: 280 DSGIGQLAAILNGDDGQHGERLLEALAPYKKEQLPLFCRESDGLRLQTAGAKTSADSHPF 339 Query: 362 GSDSGIGQ-------------LAAAINRGDKTAVKTVFQQ--------DFTDIEKRLLQS 400 +G G+ A + + G D I Sbjct: 340 PCVAGEGRGGGVKTSRSDNTVTATSFDAGQPPVTDKNAGHKNLRSQNSDEKTIHWYPTPD 399 Query: 401 GEDYIAMLEEALAGYGRYLDLLQ-ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 Y A++ A Y YL+ LQ A A P ++ +++Y++LCA G G +N + Sbjct: 400 ANLYRALI----APYQPYLEKLQDAAANPQELLNTYDQYRILCAGHHGALGTRRINAALR 455 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNI 519 Q Q+ + P +Y G P+MI ND L+NGD GI + G ++ +P Sbjct: 456 QLHQRAQGAD--PSLAYYHGLPLMILENDHRQQLYNGDTGICFEDDNGLQLH--LPGHEP 511 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + +A+++HKSQGSE+ H AL L +++REL+YT +TR++ RL + Sbjct: 512 VPLARLNPATLTDAYALSIHKSQGSEYPHVALALDEHAERLLSRELLYTGITRSKGRLDI 571 Query: 580 YADERILSAAIATRTERRSGLAALF 604 YA L A AT T R +GLA Sbjct: 572 YASADALKNAAATPTRRHTGLAWHL 596 >UniRef50_C2E8D7 Exodeoxyribonuclease V alpha chain n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8D7_9LACO Length = 795 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 131/629 (20%), Positives = 239/629 (37%), Gaps = 116/629 (18%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGD-EHPAVTLAAALLSHDA---GEGHVCLPLSRLENNE 62 L + + +D Q A + + L A L S G+ Sbjct: 188 LATEIRGLGFKRID-QIAQGMGISFDDQKRILGAVLTSLYEECYSNGNTY--------AN 238 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA-- 120 L + G + + + +++ G R+Y ++ +E+ +A Sbjct: 239 DKLLLKKSLQLLEGARSEKVDPEKVADTIIEAGHKRKIVIEGKRIYPKSLYNSEQEIAYD 298 Query: 121 --RFFNEVNHAIEVDEALLAQTLDKL---FPVSDEINWQKVAAAVALTRRIS-------- 167 R N + IE DE + + L+ + F ++ + Q A A+ + Sbjct: 299 LYRLMNNRDEPIEYDEDEIDRCLEDVQTEFSITYGQD-QLQAIKDAIKSPVFLLTGGPGT 357 Query: 168 ----VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 ++ G + ++ L ++ + I+LAAPTG+AA ++ + G Sbjct: 358 GKTTILRG---------ITEVYMKLNKIDRKDAKGIKLAAPTGRAAQKMANATGM----- 403 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 DAST+H LLG G + + + L+ +L++DE+SM+D +M L+ Sbjct: 404 ------------DASTIHHLLGIT-GGNEISANDLDYLNGTLLIIDESSMVDTELMHMLL 450 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 +PD +VIF GD++QL SV G V D+ L +P+ Sbjct: 451 SCIPDSMQVIFCGDKNQLPSVGPGRVFADM------------------LESMQIPSKE-- 490 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 L YR G S I +L+ +I G+ + D + I+ Sbjct: 491 -----------LTHIYRQGDGSSIVKLSRSIVNGEVPSDLLEKTGDRSFIKCSG------ 533 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 E+ + R + ++ + Q+ ++ Q+L + GP G+ LN + M Sbjct: 534 -----EQVCSVTKRIVQIVLKKG------QSADDIQVLAPMYMGPAGINQLNRTLAPLMN 582 Query: 464 QKR---KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR----VWFAMPD 516 R K + ++ G V+ +N+ +FNGDIG + + + + Sbjct: 583 PTRLNAKSVESGENEFHIGDRVLQLQNNPEKNIFNGDIGKIIAINESQKGRGTTMTVRFE 642 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 G ++ + + M++HKSQGSEF L + Q + + R L+YTA+TRA+ + Sbjct: 643 GREVELEQADFLNLTLAYCMSIHKSQGSEFSIVILPMVRQYSRMYARNLLYTALTRAKLK 702 Query: 577 LSLYADERILSAAIATRT-ERRSGLAALF 604 L L + + I R + L Sbjct: 703 LMLIGEPSAYANCIRAEALNRETMLKQQI 731 >UniRef50_A8RCB5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCB5_9FIRM Length = 722 Score = 361 bits (926), Expect = 5e-98, Method: Composition-based stats. Identities = 138/605 (22%), Positives = 235/605 (38%), Gaps = 103/605 (17%) Query: 23 FALTVAGDEHPAVTLAAALLSHDA----GEGHVCLPLSRLENNEASHPLLATCVSEIGEL 78 A ++ ++ + AA+LS+ G A + EL Sbjct: 202 LAANLSFEKDHPYRIKAAVLSNVMELCMSSGDSY------TTRIAIQRRMQKLFGNEIEL 255 Query: 79 QNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE-VDEALL 137 +++ E L + +I +R+Y + + E+ +A F NE + E +DE L Sbjct: 256 ESYLEQLEMERL---------LIREDERIYHHTQYDAEKGIAVFLNEFAYTQETIDENEL 306 Query: 138 AQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE 195 L+ L + Q+ A +S+I+GGPGTGKTT V +LA E Sbjct: 307 DSKLNALKERYHISYDSIQREAIRSFFNTPLSIITGGPGTGKTTIVQGILALAKIFLPNE 366 Query: 196 RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRH 255 RI L APTG+AA RL E A TLH LL + + Sbjct: 367 --RIALCAPTGRAAKRLAEVC-----------------DYPAMTLHSLLRWDLETNTFQA 407 Query: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 +A PL +V+++DE SM+D + L A + +++ +GD DQL SV G VL DI A Sbjct: 408 NAQEPLPYEVVIIDEFSMVDAWLFYHLAMACANVKKLLLIGDEDQLPSVGCGCVLRDILA 467 Query: 316 YANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 L K +R S + LA + Sbjct: 468 ANIIK-------------------------------TTRLHKIFRQHEGSDVITLAHQVK 496 Query: 376 RGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAF 435 G + DI + +D E+ L ++Q E + Sbjct: 497 EG------------YEDI----IDDAKDVAFFPAESHEIKDMVLKIVQNAFEKGF---SD 537 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALG 492 + Q+L + G G+ LN +++ + +K + + + E V+ +N G Sbjct: 538 TDVQVLAPMYGGVAGIDALNIALQKMINPADGYKKEVKVGYRIFREHDKVLQLKNQPDDG 597 Query: 493 LFNGDIGIALDRGQGTR------VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 ++NGDIG L+ A DG + + + + +++HK+QGSE+ Sbjct: 598 VYNGDIGTILEIISADEDIHHQHCIIADFDGVLVEYRGEAIYHLTHAYCISIHKAQGSEY 657 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR---TERRSGLAAL 603 L + + ++ + LVYTA+TRA++ L L + + ++ + T + + L+ + Sbjct: 658 PIVVLPIVADYRYMLQKRLVYTAITRAKKSLVLLGNREVFRRSLESNEHHTRKTTLLSKI 717 Query: 604 FSSRE 608 + E Sbjct: 718 LAYNE 722 >UniRef50_C9B1G0 Helicase RecD/TraA n=4 Tax=Enterococcus RepID=C9B1G0_ENTCA Length = 884 Score = 361 bits (926), Expect = 6e-98, Method: Composition-based stats. Identities = 146/631 (23%), Positives = 242/631 (38%), Gaps = 103/631 (16%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLSRLENN 61 QL+E +E + D A + + AA+L + G+ + L Sbjct: 191 QLVEDIEGIGFKRSDG-IAEQLGIEASSPQRFRAAVLHQIFAQSLQTGNTFIHAQDLLEQ 249 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 LL T + ++ Q V G + RLY N ++ +E +A Sbjct: 250 TLR--LLETSRPIEIAPDDLASTII--QLVEEGK----IQQEETRLYENSLYFSEWGIAS 301 Query: 122 FFNEV---NHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTG 176 + I E +++TL K+ + Q+ A A+ + +++GGPGTG Sbjct: 302 SIERLLSRKKEIVYPEKKISKTLRKIEKHLGITYGSSQEEAIKEAIRSPLFILTGGPGTG 361 Query: 177 KTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 KTT + ++ ++ D E I LAAPTG+AA R+ E+ G Sbjct: 362 KTTVINGIVQLFAELNDLDLEPSKYSDETFPILLAAPTGRAAKRMNETTGLPSG------ 415 Query: 228 EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 T+HRLLG G ++ + L +L+VDE SM+D + + L ++P Sbjct: 416 -----------TIHRLLGLN-GREKAPSISPKELEGGLLIVDEMSMVDTWLANTLFKSIP 463 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 + +VIF+GD+DQL SV G VL D+ A Sbjct: 464 TNMQVIFVGDKDQLPSVGPGQVLHDLLAIDAIPKQ------------------------- 498 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 L + YR G S I LA AI G A T Q+D + + + Sbjct: 499 ------ELTEIYRQGDGSSIIPLAHAIKNGQLPADFTQNQKDRSFFACDAYKIEPLIAQI 552 Query: 408 LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK-- 465 ++ A P + Q+L + G G+ LN+ +++ Sbjct: 553 VKRAK----------DKGYTPQ-------DIQVLAPMYRGAAGIDALNKMMQEIFNPNDG 595 Query: 466 -RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG----IALDRGQGTRV--WFAMPDGN 518 +K + + G V+ N +FNGD+G I L + +V D N Sbjct: 596 TKKEVTFNDTVYRIGDKVLQLVNSPEDNVFNGDMGQIVGITLAKQSEDKVDELVIQFDAN 655 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 + + + + ++ ++HKSQGSEF L + Q ++ R L+YTAVTR++ L Sbjct: 656 EVTYKRNEWNKITLSYCCSIHKSQGSEFQMVILPMVHQYQRMLQRNLLYTAVTRSKEMLI 715 Query: 579 LYADERILSAAIATRTE-RRSGLAALFSSRE 608 L + + + + R + L + E Sbjct: 716 LLGEPQAYQTCVNHESATRLTTLKERINGTE 746 >UniRef50_Q8PEL4 Exodeoxyribonuclease V alpha chain n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PEL4_XANAC Length = 685 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 170/461 (36%), Positives = 226/461 (49%), Gaps = 51/461 (11%) Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQL------------------------------P 224 RI LAAPTG+AA R+ ESL AL + P Sbjct: 201 PPPRIALAAPTGRAAERMAESLRIALARAIEQGLPAEHQGASPLPPAGEGARRAGEGTAP 260 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 +P ASTLHRLLG P S RH A NPL D++VVDEASM+DLP+M +L+D Sbjct: 261 TDFSWHSALPTGASTLHRLLGVIPDSPHFRHDADNPLPFDLIVVDEASMVDLPLMCKLVD 320 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT--AERARQLSRLTGT--HVPAG 340 A+ D ++I LGD DQL SVEAG VL I A G T + AR L L G Sbjct: 321 AVADGTQLILLGDADQLPSVEAGDVLAAILRAAGPGDTLPPDDARALQPLLGNAPVTAPA 380 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS 400 T L L + YR +D + LA A+ GD ++ + T + Sbjct: 381 ASTPVGHLAGHRVHLLRGYRQAADFALAPLADAVRIGDAETALSLLRSG-TLPGVHFHED 439 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 G+D +++ EAL + L A +P ++ +LL A+R GP G GLN RIEQ Sbjct: 440 GDDPLSLGREALLA---HWQALTATNDPADALRQAGRLRLLTAVRAGPQGARGLNARIEQ 496 Query: 461 FMQQKRKIHRHPH--SRWYEGRPVMIARNDSALGLFNGDIGIAL----------DRGQGT 508 + + R S W+ GR ++I N GLFNGD+GI L D Sbjct: 497 LLAESGSGARRLGAASPWFHGRLLLITENSYRHGLFNGDVGICLRSEASPASVRDPQAAL 556 Query: 509 RVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 WF DG ++ P+ LP HE+ +AMTVHK+QGSEFD L LP++ V++REL+Y Sbjct: 557 VAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELLY 616 Query: 568 TAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE 608 T +TRARR L L E ++ +A+A R SGLA + + Sbjct: 617 TGITRARRALHLAGSEAVIRSALARHAARISGLAWRLGAEQ 657 >UniRef50_B2G6M2 Exodeoxyribonuclease V alpha subunit n=8 Tax=Lactobacillus RepID=B2G6M2_LACRJ Length = 828 Score = 359 bits (922), Expect = 2e-97, Method: Composition-based stats. Identities = 130/543 (23%), Positives = 217/543 (39%), Gaps = 90/543 (16%) Query: 85 LLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLAQTLD 142 L+A+Q V ++ + +++Y ++ E +A + + + V + +T+ Sbjct: 277 LIANQIV-ELEKNQAISYADEKIYPTALYNAEWQIADHLHRLLTVDQEKVPATTIEKTVT 335 Query: 143 KLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------- 193 K+ S QK A AL ++ +++GGPGTGKTT + ++A+ ++ D Sbjct: 336 KVADQSGITYDQVQKEAIKTALNSKVMLLTGGPGTGKTTIIKGIVASYAKIHDLSLDVNE 395 Query: 194 --GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 + + LAAPTG+AA R++E+ AST+HRLLG Sbjct: 396 YKEKSFPVLLAAPTGRAAKRMSEAT-----------------DLPASTIHRLLGLNGREM 438 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 +A + L +L++DE SM+D + LI A+P V+ +GD+DQL SV G V Sbjct: 439 PTDMNARD-LEGSLLIIDEMSMVDTLLFKTLIQAVPTSMHVVLVGDKDQLPSVGPGQVFH 497 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 D+ +A L +R +DS I LA Sbjct: 498 DLLDFAELPK-------------------------------VELTNIHRQAADSTIIPLA 526 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI 431 AI G + T D + I + + + +DL + R Sbjct: 527 HAIKEGKLPSDLTNKMPDRSFISCHA-----------NQVPSVVQQIIDLSKKRD----- 570 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR---WYEGRPVMIARND 488 + N+ Q+L + G G+ LNE +Q + R + G V+ N Sbjct: 571 -YSANDIQILAPMYRGQAGIDRLNELAQQAYNPPANGKQEVDFRGLTFRVGDKVLQLVNV 629 Query: 489 SALGLFNGDIGIALDRGQGTRV------WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 +FNGDIG G V DGN S + + +++HK+Q Sbjct: 630 PEKNIFNGDIGKITAIESGRTVGKKNESITVDFDGNEVSYSRMEWNQLRLAYCISIHKAQ 689 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLA 601 GS+F L + Q + ++ R L+YTA+TRA +L L + ++ R++ L Sbjct: 690 GSQFKMVLLPIVQQFSRMLQRNLLYTAITRAAEKLVLIGEPYAAVTSVKNEAVNRKTSLV 749 Query: 602 ALF 604 Sbjct: 750 DRL 752 >UniRef50_A6P2F0 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P2F0_9BACE Length = 726 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 141/603 (23%), Positives = 220/603 (36%), Gaps = 104/603 (17%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEASHPLLATCVSEIGELQ 79 + A +A + + A GH+C+ + + + Sbjct: 207 LAQANGIARNAPERLDAGLLYTLKLAEHDGHLCMHKEAFVRKAVNLLHAPQVTWKGVAQR 266 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF------NEVNHAIEVD 133 +E + +IL D +Y M E VA +++ + ++D Sbjct: 267 AFEMI-----------QSGRLILYNDYVYRPIMARAEEEVAAGICDMLKRDKMPYMGDLD 315 Query: 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD 193 + + Q + F + E Q+ A ALT I +ISGGPGTGK + +L ++ Sbjct: 316 DEIDRQQAEMGFTFAQE---QRHAIRTALTSPICIISGGPGTGKASIQRAILNIYKKVFP 372 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 + APTG+AA R+ +S G AST+H+ L G Sbjct: 373 DSD--VVCCAPTGRAARRMEQSTG-----------------YPASTIHKALNLTAGELH- 412 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + L D+++VDE SM+D+ L +ALP + R+I +GD DQL SV GAVL ++ Sbjct: 413 KLRELQLLEADLVLVDEVSMMDMVTTWCLFNALPPNCRLILVGDADQLPSVGPGAVLNEL 472 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 A R +L K +R S + + A Sbjct: 473 LASG-------------------------------RLPAVILDKVFRQSEGSLVAENAQR 501 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 I G V + DF G+D+ +YL L R + Sbjct: 502 IRHG-------VSELDF----------GDDFQFWTSADEMQSAQYLMRLYKREVARFGV- 543 Query: 434 AFNEYQLLCALR-EGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDS 489 + LL R + GV LN + + + G VM +N Sbjct: 544 --DNVALLTPFRKKSETGVYSLNAALHDEVNPAVPGKAEIEVGQRVLRVGDKVMQMKNRD 601 Query: 490 ALGLFNGDIGIALDRGQGT---RVWFAMPDGNIKSV-QPSRLPEHETTWAMTVHKSQGSE 545 NGDIG QG V D + + L + E +A T+HKSQGSE Sbjct: 602 FA--SNGDIGYICTSTQGEDGLLVEVDFGDDRVVAYEDIEALRQLELAYATTIHKSQGSE 659 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAAL 603 +D + + ++ R L YTA TRA++R+ + D + AI T R + LA Sbjct: 660 YDAVLINIQDMHGKMLNRALFYTAETRAKKRVIIVGDWDAVVRAIQTADTKRRHTMLAMR 719 Query: 604 FSS 606 + Sbjct: 720 INE 722 >UniRef50_UPI0001B44E5F RecD/TraA family helicase n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI0001B44E5F Length = 639 Score = 357 bits (917), Expect = 6e-97, Method: Composition-based stats. Identities = 140/606 (23%), Positives = 239/606 (39%), Gaps = 100/606 (16%) Query: 28 AGDEHPAVTLAAALLSHDA-GEGHVCL-------PLSRLENNEASHPLLATCVSEIGELQ 79 A ++ V L++ G +C+ L+R N +S+ + +++ Sbjct: 96 ADNQKRVVCAILEYLNYRTDNNGDMCIYRDMVFSNLNRFLNRFSSY---SNNNISEDQIK 152 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQ 139 E L A + V + +Y + E + + + + E L + Sbjct: 153 FALEELEALKLVIIEKDEK----GNTYIYKSFYNYVENNIVNNIKNLLNKPKS-EFLQKK 207 Query: 140 TLDKLFPVSDEINW-----QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 ++ + + +K A L ++S+I+GGPGTGKT ++ L + Sbjct: 208 DINNFISYYESTFFTLDLKRKEALNTVLNSKLSIITGGPGTGKTFLTNIIVNCLKYI--N 265 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 + +IRL APTGKA+ R+ E + ++ST+HR L P + Sbjct: 266 PKVKIRLLAPTGKASNRMKELIKM-----------------ESSTIHRGLKINP----YK 304 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + + DV+++DEASMID + +LI + ++ VI +GD DQL SV AG +L D+ Sbjct: 305 NTELEEITEDVVIIDEASMIDASLFDKLISKINENTMVIIVGDVDQLPSVGAGLILKDLI 364 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 +P + L K +R DS I + + Sbjct: 365 D------------------SNIIP-------------VVKLNKIFRQSKDSSIILNSHKV 393 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 N G T +D DI L ++G D+I E + + + Sbjct: 394 NSGLLTT-----SRDGIDI---LNKTGSDFIFWKESNIFKIKSNILRSIKCLMEKYNFK- 444 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEGRPVMIARNDSAL 491 F + +L L+ GV +N ++Q K + ++ + G VM N+ L Sbjct: 445 FEDIYILTPLKLNEIGVKEINRVLQQEFNPKSSNPEYVIDNYNCFRIGDRVMQNSNNYNL 504 Query: 492 GLFNGDIGIALDR----------GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 G+FNGDIG V + + D N+ + E E ++AMT+HKS Sbjct: 505 GVFNGDIGFIRKIYTKVSQKGILEYEIEVEYKIHDKNVI-YTEDLIDELELSYAMTIHKS 563 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSG 599 QGSEF + + + + R L+YT +TRA+ +L + +E L+ +I R S Sbjct: 564 QGSEFPAVIMPIHHSQRTSLNRNLIYTGMTRAKEKLIMIGEEEALNYSIEQTKSLNRISR 623 Query: 600 LAALFS 605 L Sbjct: 624 LREKLE 629 >UniRef50_C5RAF5 Exodeoxyribonuclease V alpha subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAF5_WEIPA Length = 834 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 147/628 (23%), Positives = 235/628 (37%), Gaps = 104/628 (16%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPL 67 ++ V K++ +Q + D + + AA+ G + L L H L Sbjct: 206 IDGVSFKRIDQFALQQGIDALDDRRVSAGVIAAINLKTFESGDTYMVLPDLLA-TTKHLL 264 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 E+ E L QA+ + ++ G LY+ ++ +E +A+ ++ Sbjct: 265 EHAQRIEVDES-------LIKQALLTLTQEGVVVADGSYLYIREIFESENQIAKELIDLT 317 Query: 128 HAIEVDEALLA--QTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 + + + LD++ +D Q+ A ALT ++ +++GGPGTGKTT ++ Sbjct: 318 ERKQQTYSRKDVVKYLDEVESANDFKYDATQREAIIAALTNQLFILTGGPGTGKTTIISG 377 Query: 184 LLAALIQMADGERCR-------IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 ++A L ++ + + + L APTG+AA RL ES G A Sbjct: 378 VVATLKKLLRQDGIKSDEIDQGVHLVAPTGRAAKRLQESTGMA----------------- 420 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 AST+H LLG L L +LVVDE SM+D + + L+ A+ +VI +G Sbjct: 421 ASTIHHLLGITGREANLDDVDIEELTGQLLVVDEMSMVDTQLFATLLSAVRADMQVILVG 480 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D+DQL SV G V D+ A + L+ Sbjct: 481 DKDQLPSVGPGRVFYDLLASGILNYR-------------------------------ELE 509 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD--IEKRLLQSGEDYIAMLEEALAG 414 +R G S I LA + G DFTD I++ + + L E +A Sbjct: 510 TIHRQGKGSTIISLANDVKNGRLP-------DDFTDQKIDRSFFSAELRQVPNLVEKIAT 562 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ----KRKIHR 470 + + Q+L + GV LNE + K+ I Sbjct: 563 SW------------QKKGNSVADMQILAPMYRTQAGVNHLNEIAQNIFNPITNKKKTILV 610 Query: 471 HPHS---RWYEGRPVMIARNDSALGLFNGDIGIA--------LDRGQGTRVWFAMPDGNI 519 + G VM ND +FNGDIG V D Sbjct: 611 KNGDFTFTFRVGDKVMQTTNDPENNVFNGDIGYISTILLAKDKANTDKKDVITVSFDTGE 670 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + +A T+HKSQG+E+ + L + + ++ R L+YT +TRA L L Sbjct: 671 VIYTRENWQQLTLAYATTIHKSQGTEYKLVIMPLVNAFSRMLQRNLLYTGLTRASESLVL 730 Query: 580 YADERILSAAI-ATRTERRSGLAALFSS 606 E A+ T R++ L A Sbjct: 731 LGQESAYQQAVLTTGVNRQTTLQARIMQ 758 >UniRef50_C3RKU1 Exodeoxyribonuclease subunit V alpha n=4 Tax=Bacteria RepID=C3RKU1_9MOLU Length = 731 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 130/529 (24%), Positives = 212/529 (40%), Gaps = 84/529 (15%) Query: 96 EPTPMILCGDRLYLNRMWCNERTVARFFN-EVNHAIEV-DEALLAQTLDKLFPVS--DEI 151 + +I GD+ Y M E+ +A + +N E+ DE + + L Sbjct: 262 DEGLIIQRGDKYYYFEMDEAEKNIAEYLKIRINKPDELFDEKEVERLLTNYEKTQGICYA 321 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 QK A L +++GGPGTGKTT V LL + + RI L APTG+AA R Sbjct: 322 AKQKEALNYFLKSSCMILTGGPGTGKTTIVQALLKVYSVLYPDD--RIGLVAPTGRAAKR 379 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 LTE G A T+HRLL S + NPL LDVL++DE Sbjct: 380 LTELTGIY-----------------ACTIHRLLKWDLHSNTFAMNKSNPLDLDVLIIDEF 422 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SM+D ++S+L +A +V+F+GD QL SV G +L D+ Sbjct: 423 SMVDCLLLSKLFEAGRGINKVLFIGDYHQLPSVAPGNILQDLMEAGVK------------ 470 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ-QDF 390 L + +R DSGI QLA I + + Q +D Sbjct: 471 --------------------TIELDEIFRQAKDSGIIQLAHHIIHNEIENMDLFEQYRDI 510 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG 450 ++ ++++A+ D N+ Q+L + +G G Sbjct: 511 NFFPCINYDVVKNVKIIVKKAI----------------DEGYDT-NDIQVLVPMYQGVAG 553 Query: 451 VAGLNERIEQFMQQKRKI---HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG 507 + LN+ ++ + ++ + G ++ +N +FNGDIG ++ + Sbjct: 554 IDALNDALQDVFNPIDEFNDSYQIGRKEYRVGDKILQLKNRPDDDVFNGDIGTLVEICRK 613 Query: 508 TRV------WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 DGN + + M++HKSQG+EF + + S ++ Sbjct: 614 DNFEYLQDTLIVDFDGNFVEYTSNTFNTITHAYCMSIHKSQGNEFKIVIMAVLSDYYIML 673 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAALFSSRE 608 R L+YTA+TRA++ L + + +A + R++ L + F + E Sbjct: 674 RRNLLYTAITRAKQSLFILGSSKAFMHGLANYQDSRRKTSLKSRFKTIE 722 >UniRef50_B1MY70 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=3 Tax=Leuconostoc RepID=B1MY70_LEUCK Length = 799 Score = 355 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 138/612 (22%), Positives = 238/612 (38%), Gaps = 106/612 (17%) Query: 22 QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 81 Q + + + AA+++ GH + +L + S+ LL + Sbjct: 213 QLGIDRLDTKRLQAAVYAAIMNVSFQYGHTYVTREQL--RQISYQLLRENRIDSA----- 265 Query: 82 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL 141 A++ E + + D++Y ++ E VA+ + HA L A + Sbjct: 266 -----IDSAITMLIEQHVLTVDDDKIYATTLYVAENQVAQHLTRLVHA-PAPIDLTAADV 319 Query: 142 DKLFPVSDEI---NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER-- 196 D F ++ + Q A L ++ +++GGPGTGKTT V ++A ++ Sbjct: 320 DSGFDTPSQLILDDTQIAAVKAGLNAQVFLLTGGPGTGKTTIVKSIVATWQKILQHHAKF 379 Query: 197 ----------CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 +++A+PTG+AA R+TE G DA+T+HRLLG Sbjct: 380 ADNAQDFLKLYAVKMASPTGRAAKRMTEVTG-----------------HDATTIHRLLGI 422 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 NP+ +L++DEASM+D+ + ++L+ A+P ++I +GD DQL SV Sbjct: 423 T-DLGEPEFDNENPISGGLLIIDEASMLDIELTAKLLAAIPSGMKLIIVGDSDQLPSVGP 481 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G VL D+ L+ YR G S Sbjct: 482 GNVLADLVNSGILPH-------------------------------IELETIYRQGRGSS 510 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I LA I G + L++ D + ++QA Sbjct: 511 ITALAQNIKSGRLP--------------EDFLENKHDRSTFMVSPEQAETAIKQVVQAAI 556 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEGRPVM 483 + + ++ Q+L + + GV LN + ++ K + H+ + +G V+ Sbjct: 557 KKNY---TQDDLQILTPIYKTSAGVLTLNTMAQALFNPEKATKKSLQFGHTYFRKGDKVL 613 Query: 484 IARNDSALGLFNGDIGIAL--------DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 NDS ++NGD+G + DG + L + +A Sbjct: 614 QLENDSERDVYNGDMGTIIAVQSKQDKGNEDHEDRLVVDFDGKELAYTKKDLSQLTLAYA 673 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT- 594 TVHK+QG+EF ++L SQ ++ R L+YT +TRA+ L L D + + A T Sbjct: 674 TTVHKAQGNEFKLVIMVLTSQFGLMLNRNLLYTGITRAKEALILVGDYQAFNRAAKTPVP 733 Query: 595 ERRSGLAALFSS 606 +R + L + Sbjct: 734 QRATTLKQRLQA 745 >UniRef50_A9NFP8 ATP-dependent exoDNAse (Exonuclease V), alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFP8_ACHLI Length = 749 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 248/623 (39%), Gaps = 99/623 (15%) Query: 5 KQLLEAVEHKQLRPLDVQ--FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE 62 + + E ++ D+ F ++ L AL++ EG++ L L + Sbjct: 180 RLMYEIDGFGFIKSRDIAEKFGISKTDIRTLKAALVYALITTSNSEGNLYLFEEELMSRV 239 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 + + A+ + ++L D+ +L +++ +E +A+ Sbjct: 240 SRVIDVDADF---------------KPAIDELIKENKLVLEDDKYFLKQIYRDEIDIAKR 284 Query: 123 FNEVNHAI--EVDEALLAQTLDKL--FPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 E+ VD LL L ++ D Q+ A A+ ++VI+GGPGTGKT Sbjct: 285 IKELKTYPLDHVDTELLELMLSQISIQKSIDYTEKQRQAIITAMQNPLTVITGGPGTGKT 344 Query: 179 TTVAKLLAALIQ------MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 T + L + + I L APTG+A+ R+ E Sbjct: 345 TLIDGFLELYAKYFKINLKSKDATNEIALMAPTGRASKRMRE-----------------L 387 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 + A T+H LG Q + + PL +++++DEASMID+ +M RL++++ D RV Sbjct: 388 LDFPARTIHSHLGFDFD-QSFKSNKVQPLVQNLIIIDEASMIDIYLMKRLLNSIIDGTRV 446 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV G VLGD+ + + Sbjct: 447 VIVGDEDQLPSVGPGYVLGDLISSNVVP-------------------------------V 475 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L + +R DS I +LA++IN + + + D T +GED ++ + Sbjct: 476 IRLNEIHRQAKDSHIVKLASSINNQNLSQEDLISHNDVTFYS----GTGEDIKRVIINQI 531 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIH 469 G + N+ Q+L +G G+ +N I+ + Sbjct: 532 GGAMK------------KGYDLINDIQVLIPQYKGDLGIDTMNLEIQAKFNPNYNQPPFM 579 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGTRVWFAMPDGNIKSVQPSR 526 + +Y G V+ +ND + NGDIG+ + ++ DG + + + Sbjct: 580 KFGDKTYYIGDKVIQLQNDKDKEIMNGDIGVVKAIRKNDKNQKILQVDFDGLLVNYDQNE 639 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L + +++HKSQGSE+ L + ++ +EL+YTA+TRA+ L + D R+L Sbjct: 640 LDTLNLAYVISIHKSQGSEYQVVFLPIIKSYLHMLKKELIYTAITRAKSHLLVLGDLRLL 699 Query: 587 SAAIATRTE-RRSGLAALFSSRE 608 A E R + L + E Sbjct: 700 QYASNQLVEKRHTMLKERLTHDE 722 >UniRef50_D1R7X6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X6_9CHLA Length = 597 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 173/628 (27%), Positives = 267/628 (42%), Gaps = 77/628 (12%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHP 66 L +E + L A E PA + LLS GH+C +R++ + S Sbjct: 11 LNALLELEILPYEAYAVAKLSVEHEAPAAFICHLLLSTQ--NGHLC---TRIKQDVVSPS 65 Query: 67 LLATCVSEIGELQNWE------ECLLASQAVSRGDEPTPMILCGDR-LYLNRMWCNE--- 116 + + E + + E L+ R D+ + +I + YL + W E Sbjct: 66 IDEVWIGEPHQKELIEPLLLHLLDLVKEAVQKRSDDLSQIIYRREHAYYLQKHWQQETLW 125 Query: 117 -RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 V + N I+ D + + L + Q A A + + +I GGPGT Sbjct: 126 INCVKKVLMPANQWIDSDA--IQTEVSHLIDNQKLLPEQAQAILKAAQQNLLLICGGPGT 183 Query: 176 GKTTTVAKLLAALIQMADGER---CRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 GKT T +L+ L E+ +I LAAPTGKAA+ L SL KA LP + K Sbjct: 184 GKTYTAGQLIKTLWNHLPPEKQKTFQIALAAPTGKAASNLQNSLAKATENLPNWEIPK-- 241 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A TLH LL P + + + +PL D++++DE+SMIDLPMM +L +L A++ Sbjct: 242 ----AKTLHALLNIIPY-KYAKKRSFSPLAADLILIDESSMIDLPMMIQLFSSLKPSAKL 296 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 I LGD QL +V G+ D+ Y + D + Sbjct: 297 ILLGDHHQLPAVGIGSPFRDLRTYMQ-------------------------NKSEYADQV 331 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ-DFTDIEKRLLQSGEDYIAMLEEA 411 L+ R GI A + GD + T+ + IEK L Sbjct: 332 VELKTCLR-AELKGILDFAETVKSGDASGALTLLENAHLQGIEKVFLDEKMSLSNFYTFF 390 Query: 412 LAGYGRY--LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNE-RIEQFMQQKRKI 468 L + D +Q R+ P+ ++ FN ++L LR+GPFG+ LN +E+FMQ + Sbjct: 391 LEKTAPFFSFDNIQNRS-PEELLTVFNRVRILSPLRKGPFGIETLNHLLLERFMQNHSTL 449 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ------GTRVWFA----MPDGN 518 P+++ +ND LFNG+IG+ + + G F Sbjct: 450 SPFVA-------PILLTKNDHKSELFNGEIGVLVRLQKNEGLQPGDYALFPCKAKDGSET 502 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 I+ + LP+ E + ++VHKSQGSEFD L+LPS + V RE++YTAVTRA++ L Sbjct: 503 IRRIPALLLPQFEYAYCLSVHKSQGSEFDQIFLMLPS-GSEVFGREILYTAVTRAKKYLQ 561 Query: 579 LYADERILSAAIATRTERRSGLAALFSS 606 ++ D + + ++R S Sbjct: 562 IWTDPNTFTMTLKQTSKRLSSFVERMDD 589 >UniRef50_B1YJE6 Helicase, RecD/TraA family n=2 Tax=Exiguobacterium RepID=B1YJE6_EXIS2 Length = 741 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 150/601 (24%), Positives = 230/601 (38%), Gaps = 109/601 (18%) Query: 32 HPAVTLAAAL--LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQ 89 HP A+ + L +AGEGH + L LL E L+ E LL Sbjct: 216 HPERVAASIMHILEQEAGEGHAFATVESLLQRAPR--LLGEDPGE--RLEQAIELLLTED 271 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD 149 V L LYL ++ E A+ V E +A L + + + Sbjct: 272 KVK---------LEEGCLYLPTIFYAEVRAAKELARVMANGSEQEVDVATILSAIGQLEE 322 Query: 150 EINW-----QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD----------G 194 Q+ A +A+ + V++GGPGTGKTT + +L AL ++ D G Sbjct: 323 RFGMEYAVQQREAIELAVKAPLMVLTGGPGTGKTTVIKGILHALQEIHDWPLEKSQVKSG 382 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 E L APTG+AA RL+E+ A T+HRLL + Sbjct: 383 EVYPYVLVAPTGRAAKRLSEAT-----------------DVPAMTIHRLLKY--DGTNFQ 423 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 P+ VL++DE+SMID+ ++S L+ A+P+ +++F+GDRDQL SV G VL D+ Sbjct: 424 LDEDQPIAGKVLIIDESSMIDIYLLSSLLRAVPNGMKILFVGDRDQLPSVGPGQVLADLM 483 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 + L +R DS I +LA + Sbjct: 484 DTDGIP-------------------------------VVRLNVVHRQAEDSSILRLAHDL 512 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQ 433 +A D +S A E+ALA GY ++ Sbjct: 513 KNRVTSADLLAPLSDRRFYSLAPQESLRGIAAFAEKALAKGYSKF--------------- 557 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSA 490 + Q+L G G+ LN +++ K++ + + G ++ N++ Sbjct: 558 ---DVQILAPTYRGQVGIDELNIVLQKVYNPEAPKKREVKQGTRIYRSGDKILQLVNNAE 614 Query: 491 LGLFNGDIG------IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 ++NGDIG A + A D S + +A+T+HK+QGS Sbjct: 615 ENVYNGDIGEIVNIFFAKENVDKVDKIIARFDQTEVEYNRSDWDQFTHAYAITIHKAQGS 674 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA-TRTERRSGLAAL 603 EF + + +R L+YTAVTRA+ L L+ D R A RR+ L Sbjct: 675 EFPIVLMPVFFTGAFKHSRNLIYTAVTRAKASLLLFGDPRAFHKASQEEEPRRRTRLIER 734 Query: 604 F 604 Sbjct: 735 L 735 >UniRef50_D2S6B9 Exodeoxyribonuclease V n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S6B9_9ACTO Length = 659 Score = 351 bits (900), Expect = 6e-95, Method: Composition-based stats. Identities = 153/598 (25%), Positives = 232/598 (38%), Gaps = 99/598 (16%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLE---NNEASHPLLATCVSEIGELQNWEECL 85 D + A L +GH LP + E +A + + + E Sbjct: 137 QDTRRGRAVVAHTLRTATRDGHTVLPADLVVAALRAEGVADPVAAIGAAVESGEVLEHEP 196 Query: 86 LASQAVSRGDEPTPMILCGDR---------LYLNRMWCNERTVARFFNEVNHAIE--VDE 134 + + P + L L R E VA + E D Sbjct: 197 PEPEYDEDAGDLGPHQPDDELPEPDPALRTLSLARYGMAEEAVAENVARLAATAERIADP 256 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 A + L + QK A A L +S+++GGPGTGK+ TVA ++ L Sbjct: 257 AAVRSVARGL------DDAQKQAVAQVLGAGVSLLTGGPGTGKSRTVAAVVKLLQ----A 306 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 + + LAAPTG+AA RL E A T+HRLLGAQ S Sbjct: 307 KGAEVALAAPTGRAAKRLEELT-----------------DHPAVTVHRLLGAQGTSGGFA 349 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + PL DV+VVDEASM+D+ + + L++A D ++ +GD QL S+ G VLGD+ Sbjct: 350 RNEEWPLDADVVVVDEASMLDVELTAALLEACQDGTHLLLVGDPAQLPSIGPGHVLGDLI 409 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 + L YR I +LA A+ Sbjct: 410 DSGVVP-------------------------------VTELTTLYRQAEGGAIARLANAV 438 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 G+ V D D E ++ +G A R + L+ L I Sbjct: 439 RGGELPPV------DSPDREVVVVPAGGSAEAA--------KRVVQLVTDSIPRALRIDP 484 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSAL--- 491 Q++ + GP G LN+ ++ + + G V+ N L Sbjct: 485 AT-VQVVTPVHRGPAGTIELNKALKARLNPGDGTVWG----FDVGDRVVATANHLDLEPT 539 Query: 492 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 G NG+ G+ G GT + G +V S + + WA+TVH++QGSE+ + Sbjct: 540 GFANGETGVVTGTGDGT-LDVDFASG-PVTVSGSAMSDLRHGWAITVHRAQGSEWPGVVV 597 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLY-ADERILSAAIATRTE--RRSGLAALFSS 606 +LP + +++R LVYTA+TRA+R LS+ A L+ A++ RR+ LA L + Sbjct: 598 VLPPEAGGMLSRPLVYTALTRAQRHLSIVHASGAALARAVSQVDVRPRRTRLAQLLAE 655 >UniRef50_D2U880 Probable exodeoxyribonuclease v, alpha subunit protein n=1 Tax=Xanthomonas albilineans RepID=D2U880_XANAL Length = 647 Score = 351 bits (900), Expect = 6e-95, Method: Composition-based stats. Identities = 233/631 (36%), Positives = 308/631 (48%), Gaps = 41/631 (6%) Query: 5 KQLLEAVEHKQLRPLDVQFAL---TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 LR LD+ FA + PAV AAAL S GH L +R Sbjct: 2 NLFDALQRAGTLRTLDLAFAQSLQRLDPTTAPAVLAAAALASLAVASGHAGLDPARA--- 58 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSR------GDEPTPMILCGDRLYLNRMWCN 115 A + + +W L AS+ V++ P++L LYL R Sbjct: 59 NALLDSRDSTAPPLPTTDDWMRALAASRWVAQPVAEDAASADCPLVLERGLLYLRRYREY 118 Query: 116 ERTVARFFNEVNHAIEV--DEALLAQTLDKLFPVSDE--------INWQKVAAAVALTRR 165 ER +A + D A LA +LFP + + Q AAA+AL R Sbjct: 119 ERRLALGLRRLAAPSPPQGDLAALAPLFAQLFPRAGRQATLDDSFPDRQARAAALALRRA 178 Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADG---ERCRIRLAAPTGKAAARLTESLGKALRQ 222 + +++GGPGTGKTTT+A+LL I + RI LAAPTG+AA R+ ESL A+ Sbjct: 179 LLLVTGGPGTGKTTTIARLLLLRIAQSHTLSMPAPRIALAAPTGRAAERMAESLRAAVAH 238 Query: 223 L---PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 + + +P ASTLHRLLG S R RH NPL +V+VVDEASM+DLP+M Sbjct: 239 ACADGVDPALAEALPASASTLHRLLGVIRESPRFRHDPDNPLPFEVIVVDEASMVDLPLM 298 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG--FTAERARQLSRLTGTHV 337 +L++A+ D A++I LGD DQL SVEAG VL I A G A L L G Sbjct: 299 CKLVEAVADGAQLILLGDADQLPSVEAGDVLAAILQAAGPGDALQPADAHALRPLLGH-- 356 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 + T++ L L +SYR D + LA A+ G+ + ++ ++ Sbjct: 357 -SAVATQSGGLIGHRVQLLRSYRQAQDFTLAPLAEAVRTGEADTTMQLLRKG--ELAGVH 413 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNER 457 G D L + L A P + A +LL A+R GP G LN R Sbjct: 414 FHDGVD--DPLVAGGDALFAHWRALGEAANPSEALHAAARLRLLTAVRAGPQGAHTLNAR 471 Query: 458 IEQFMQQKRKIHRHPHS--RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV-WFAM 514 IEQ + HR S W+ GR ++I N GLFNGD+GI L QGT V WF+ Sbjct: 472 IEQRLAGPTSGHRRLGSATPWFHGRLLLIVENSYRHGLFNGDVGICLRDAQGTLVAWFSG 531 Query: 515 -PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 DG+++ P+ LP HE+ +AMTVHK+QGSEFD L LPS+ V++RELVYT +TRA Sbjct: 532 AGDGHVRGFHPAALPAHESAFAMTVHKAQGSEFDTVWLQLPSRDARVISRELVYTGLTRA 591 Query: 574 RRRLSLYADERILSAAIATRTERRSGLAALF 604 RR L L A E +L AA+A R R SGLA Sbjct: 592 RRALHLAASEPLLRAALARRAARISGLAWRL 622 >UniRef50_C5B4P9 Putative Helicase, RecD/TraA family n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P9_METEA Length = 866 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 156/620 (25%), Positives = 240/620 (38%), Gaps = 98/620 (15%) Query: 7 LLEAVEHKQLRPLD--VQFA-LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L E +E R D A +A + L L + GH LP S L A Sbjct: 306 LAETIEGIAFRSADEVAHSAGHQLADPKRIRGALRFFLDARTREGGHCGLPPSMLVETVA 365 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + + + A V+ P P++ +ER +A Sbjct: 366 DEIGVGAVAVRAELDEVADGRTHALDEVTNLIYPIPLL------------RDERDIADRI 413 Query: 124 ----NEVNHAIEVDEALLAQTLDKLFPVSDEINW-QKVAAAVALTRRISVISGGPGTGKT 178 E A E E + + ++ Q+ AA A++ I +++GGPGTGKT Sbjct: 414 LTLMAEAKPASETPEEACRLVDEAAAELGFVLDESQRQAAVSAVSEGICILTGGPGTGKT 473 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TTV +L AL + ++ +A PTG++A R + G S Sbjct: 474 TTVRVILKALQSV----ERKVAIAGPTGRSAKRAADVTGAKT-----------------S 512 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 TLHR+L + + + PL D L+VDE SM+D + + A+ + + +GD Sbjct: 513 TLHRMLEWEAAAGGFTRNQRRPLQEDHLIVDEFSMVDTRLAAAFFQAVAPGSAITIVGDV 572 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV +G +L D+ A + +C L Sbjct: 573 DQLPSVGSGQILRDLIASGSVP-------------------------------VCRLSVV 601 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R +GI A IN G AV FT E G Sbjct: 602 HRQKDGNGIVAAAHNINAGALPAVSAKAADGFTFTEAY--------------GANGISEQ 647 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSR 475 L + R P+ I + Q+L +R+G GV LNE ++ + + R H Sbjct: 648 LVRMVTRDLPERGIDVSRDVQILAGMRQGEIGVTKLNEILKATLNPAAEDGRTVRLGHRL 707 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIA-----LDRGQGTRVWFAMPD--GNIKSVQPSRLP 528 + G VM RN+ ++NG++G + RG+ V + G+ Sbjct: 708 FTVGDRVMQMRNNYEKKVYNGEVGQICWVGEVKRGEKEMVTAIRVEYPGDQVVYTAEDAD 767 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSA 588 + + WA TVHKSQG EF ++P+ +++R L+YTAVTRA++ L D R L + Sbjct: 768 DIDYAWATTVHKSQGCEFPVVLFVVPNSHQSILSRNLLYTAVTRAKQECHLVGDGRALRS 827 Query: 589 AIATR--TERRSGLAALFSS 606 AIA T R +GLA ++ Sbjct: 828 AIAKADTTRRYTGLALRLAA 847 >UniRef50_Q310C7 ATP-dependent DNA helicase, RecD/TraA family n=4 Tax=Deltaproteobacteria RepID=Q310C7_DESDG Length = 698 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 130/579 (22%), Positives = 225/579 (38%), Gaps = 84/579 (14%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 + GH + L ++A+ L+ + +++ + L+ QA++ Sbjct: 180 CVREALDNGHCWIEYEDLV-DQANLLLVMDALDSRVRIESALDALIEEQALACDSHGGRF 238 Query: 101 ILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV 160 ++ L + ER +A F + +++ S Q A Sbjct: 239 VVA-----LPEIVRMERELALLFGQAETPNPHFQSVKKLDALIRRCASTLNEKQLDAVRS 293 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 AL IS+ISGG G+GK+ T++ + + + + LAAPTGKAA RL E G++ Sbjct: 294 ALQHSISLISGGAGSGKSYTISVI----NTICEESDLEVVLAAPTGKAAKRLEEVSGRS- 348 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 +T+HRLLG + NP+ DVLVVDE SM+D+P+ Sbjct: 349 ----------------GTTIHRLLGY--DGKGFSRSKENPIDADVLVVDEFSMVDVPLAW 390 Query: 281 RLIDALP-DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 L +A+ V+ +GD +QL V G +L D+ Sbjct: 391 HLFEAVDLSRTTVLLVGDHNQLPPVGPGNILRDLIQ------------------------ 426 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 + +L K R + + A+ +G+ D Sbjct: 427 -------TRAIPTVILDKVVRQA--GVLKENCTAVLKGEVRKTSEASVSGCRDWY----- 472 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 + + +A L+L Q R + L + Q+L +GP G LNE ++ Sbjct: 473 ----LVDQFTDPMAARSFLLELFQERLDT-LGFDIIKDVQVLTPTHKGPLGTKELNEELQ 527 Query: 460 QFMQQKRKIHRHP------HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFA 513 + +Q+K P + + + V+ RN+ L + NG IG +D + Sbjct: 528 RLIQRKLWNTEVPPVAMGRRAPFLKHDKVIQTRNNYDLNVMNGAIGYVVDVLANGTL-VI 586 Query: 514 MPDGNIKSVQPS--RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 DG ++ L + + +A+T+HK+QGSEF A +++ + + R L+YT VT Sbjct: 587 DFDGMPVELEKGSPDLQDLQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNLLYTGVT 646 Query: 572 RARRRLSLYADERILSAAIAT--RTERRSGLAALFSSRE 608 RARR + D + +RR+ L + + Sbjct: 647 RARRTAIVLGDHWGIQNCAKRCQVDDRRTFLPLFLDAAQ 685 >UniRef50_UPI0001C367B5 helicase, RecD/TraA family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C367B5 Length = 759 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 137/610 (22%), Positives = 222/610 (36%), Gaps = 104/610 (17%) Query: 16 LRPLDVQFALTVAGDEHPAVTLAAALLS---HDAG-EGHVCLPLSRLENNEASHP----L 67 R +D GD H + + ALL G GH+ L L Sbjct: 205 FRRVDS-IRQKSGGDLHDPMRIKGALLCVLDEARGKSGHLYLEKKEHIKAALYLLNEKVL 263 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV- 126 L+ ++ + + L+ + AV E +Y ++ E AR Sbjct: 264 LSNNRIREQQVTDTLQELILNGAVVSMKEN---------IYKPNIFEMEDETARQIALRL 314 Query: 127 --NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 ++LL Q ++ F +S N Q A +S+I+G PG+GKT+ + + Sbjct: 315 LDRTPCPNMDSLLEQVKNR-FGLS-LSNMQAKGVQQACMYNLSIITGPPGSGKTSAIKAI 372 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR-L 243 + + + I+L APTG+A+ R+ ES G E+ASTLH + Sbjct: 373 IEMFRILH--PKGIIKLMAPTGRASRRMVESTG----------------FEEASTLHSGM 414 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 + R + L D+++VDE S++D+ +MS+ L + +++ +GD DQL S Sbjct: 415 CIVSEEDENYRKKEPDLLEADLVIVDEVSLVDMWLMSQFFKRLKRNTKIVLVGDVDQLPS 474 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V AG VL ++ + +L + +R Sbjct: 475 VGAGNVLYEMIHCGLIP-------------------------------VTVLDEIFRQEK 503 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 S I A IN+G + DF I + + + Sbjct: 504 GSTIPHNAKLINQG---CTRLHGSDDFIFIPS-----------------VNQAKAAETIV 543 Query: 424 ARAEPDLIIQAFNEYQLLCALRE-GPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEG 479 R ++ + Q+L RE G VA LN I + + + G Sbjct: 544 ERYCQEIAENGIEQVQILSPFREEGAASVAHLNAVIRERVNPFCSTEDEIHTGSKSFRVG 603 Query: 480 RPVMIARNDSALGLFNGDIGIA---LDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 +M +N + NGD+G D +G RV G L E ++A Sbjct: 604 DRIMQTKNTEH--VSNGDLGFIRYVKDTPEGKRVGMDFGPGRELEYGFEDLSHVELSYAT 661 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RT 594 TVHK GSEF + ++ R L+YTAVTRA+ ++ L + L AI Sbjct: 662 TVHKGMGSEFSIILFPVLEAHKIMLYRNLIYTAVTRAKTKVMLVGQKSALLTAIHRNGNN 721 Query: 595 ERRSGLAALF 604 +R + L Sbjct: 722 KRNTLLGHRI 731 >UniRef50_Q04YR4 Exodeoxyribonuclease V, alpha subunit n=4 Tax=Leptospira RepID=Q04YR4_LEPBL Length = 616 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 157/655 (23%), Positives = 260/655 (39%), Gaps = 106/655 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 KL+ +L+ E L+ + F+ + L + S + EG +C+P+ + E Sbjct: 12 KLKADILDLYESGALKKIPENFSDYL------LEILNSIWSSME--EGSLCVPVKK-EWR 62 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + V + E Q W +Y + ++ + Sbjct: 63 DVLKLKPPGLVVDKFENQEW-------------------------VYFEKTHRSKTDLES 97 Query: 122 FFNEVNH---AIEVDEALLAQTLDKL----FPVSDEINWQKVAAAVALTRRISVISGGPG 174 E +VD + L L FP+ + Q L ++SGGPG Sbjct: 98 LLKERIQNDVPPKVDRHRAEKILKNLESKSFPLKEA---QVKTILSCLNSSFHIVSGGPG 154 Query: 175 TGKTTTVAKLLAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 TGKTT VA LL L Q+ I L APTG+AA RLTES+ + L+++ E K Sbjct: 155 TGKTTVVAFLLEILNQLGQLPSPEEIALVAPTGRAAQRLTESIQENLKKIS---EMKGSD 211 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA--- 290 T+H LL + ++ L +++VDE SM+DL +M L +A+P Sbjct: 212 FLRGQTVHGLLSYKSSLGGFYYNRERYLPHRLIIVDEVSMVDLNLMLSLWNAIPRDTKKD 271 Query: 291 ------RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 R I +GD QL SVE GAVL D + + ++A SRL G++ G Sbjct: 272 DRKIPLRFILIGDPHQLPSVEKGAVLSDFLSVLES----KKANFASRLEGSNRQKSKGNV 327 Query: 345 AASLRDSLCLLQKSYR-----------FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 + + + +L S F + IG+ + K + V+ Q+ + Sbjct: 328 SKIVVLAEEILGYSPENLNLGTKIDDSFPKTTTIGENS-------KYESEVVWLQNPANK 380 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL--------IIQAFNEYQLLCALR 445 L E + E + + + DL + +++ L R Sbjct: 381 TSDHLSRDEVVEKLWTEIFHPGISKIGTWKVKDSFDLNEAGFILKFQEELKKFRCLTVFR 440 Query: 446 EGPFGVAGL-----NERIEQFMQQKRK-----IHRHPHSRWYEGRPVMIARNDSALGLFN 495 G +GV + N + +K + R ++ G P++I +ND LFN Sbjct: 441 NGYWGVEAIQTKIMNLAAQDLFHRKDQKPDFFAKRLSKRLYFIGLPILITQNDKNRKLFN 500 Query: 496 GDIGIALDRGQGTRVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 GDIGI L + P +G + LP+HE + M++HKSQGSE+D + +P Sbjct: 501 GDIGIVLRMESTGELRAVFPIEGKLLPFALDTLPKHEPAFVMSIHKSQGSEYDTILIYIP 560 Query: 555 SQR--------TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 ++ R+++YT +TRA+ ++ L + + IA +R +G Sbjct: 561 DHPESQEKERSHRLLNRQILYTGITRAKNQVILAGNPKTWEIGIANSQKRNTGFK 615 >UniRef50_A2C8A4 Possible exodeoxyribonuclease V 67 kD polypeptide n=2 Tax=Prochlorococcus marinus RepID=A2C8A4_PROM3 Length = 576 Score = 343 bits (881), Expect = 1e-92, Method: Composition-based stats. Identities = 160/557 (28%), Positives = 247/557 (44%), Gaps = 61/557 (10%) Query: 55 LSRLENNEASHPLLATCVSEIGELQNWEEC----LLASQAVSRGDEPTPMILCGDRLYLN 110 + L E L A + + W E LLAS + +PM+L G++L Sbjct: 42 MDALARGELQLNLTAMSPPQELKAMGWPEAHCQALLASGWLE--GAASPMVLNGNQLSWR 99 Query: 111 RMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEIN-WQKVAAAVALTRRISVI 169 R + V + +N + V + T + D +N Q+ A + ++ Sbjct: 100 RWHGDMDAVIKEL--INRSNVVQATSICTTPSHHPALLDGLNPEQQAAVEAIDNHGVVLL 157 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 SGGPGTGKT+T+ ++LA + + G RI LAAPTGKAA RL E++ K L +P T Q Sbjct: 158 SGGPGTGKTSTIVQMLARAVTLRPG--LRIGLAAPTGKAARRLEEAVRKGLEAIPPTQRQ 215 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 STLHR L A+PG H +PL LD+LV+DE SM++L +M L+ ALP Sbjct: 216 -ALTSLPCSTLHRWLQARPGG--FGRHQQHPLMLDLLVIDEMSMVELSLMQALLSALPID 272 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 ++++ +GD DQL V +GAV + A L +L R Sbjct: 273 SQLVMIGDPDQLPPVGSGAVWHQLQQADIRQQFNHGAIHLHQLYRN-------------R 319 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 SL L + D G+ ++ K+A Q + + + + L+Q +++ L+ Sbjct: 320 GSLATLSRVL---CDQGLSAFWQQLSLLPKSANVEQHQCNLSSMPRFLVQHLQEHSRTLQ 376 Query: 410 EALA---------GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 A Y + + ++ + +LC R G +GV ++ + Sbjct: 377 RLTAELMLELPDDAYTSTMLNTNLAVAAESLLDSLERLMVLCPKRRGFWGVDDVHRAL-- 434 Query: 461 FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDG--- 517 + RW G PVM N + LGL NGD+G+ + +G R+ F + Sbjct: 435 ----LGQSLEAGVMRWPLGTPVMCCENQAELGLANGDVGLVVGQGDNLRILFRVISEQGG 490 Query: 518 -NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS------------QRTPVVTRE 564 + + P+RL E A+TVHKSQGSE DH L+ P + R+ Sbjct: 491 LTTRFIHPARLSVVEPALALTVHKSQGSEADHVILLWPEIKAVSATSADGFESASSFERK 550 Query: 565 LVYTAVTRARRRLSLYA 581 L+YTA+TRAR+R+ L Sbjct: 551 LLYTAITRARQRVDLVT 567 >UniRef50_B9YCG7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG7_9FIRM Length = 732 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 129/593 (21%), Positives = 218/593 (36%), Gaps = 99/593 (16%) Query: 30 DEHPAVTLAAALLSH-DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLAS 88 D AL+ + G + L +H + C + E LL Sbjct: 217 DPRRLEAAMVALVDQMNMQSGDTFVSREGL-----AHQMKRQCAGLTYDFDELLESLLLQ 271 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN--EVNHAIEVDEALLAQTLDKLFP 146 + ++ R+Y + E +A+F VD L LD L Sbjct: 272 RR---------LVEEEGRIYHVDQYDAEVQIAQFLTLFPFEELESVDPETLQFELDALQE 322 Query: 147 VSDEINWQKV--AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 Q A + +++GGPGTGKTT V L A ++ + RI AP Sbjct: 323 KLAITYDQAQLDAIHTFFEQDAMILTGGPGTGKTTVVRALTALFKKLYPYQ--RIACCAP 380 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TG+AA RL E D T+H LLG S +PL +D Sbjct: 381 TGRAAKRLAELT-----------------ETDTFTIHSLLGWDLESNTFTKTEQDPLIVD 423 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAE 324 +L++DE SM+D + + L A ++ +GD DQL SV G VL D+ Sbjct: 424 LLIIDEFSMVDSWLFAALCKASVHVKKLCIIGDEDQLPSVRCGCVLKDLITSELFP---- 479 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 L L++ +R S + LA I +G + Sbjct: 480 ---------------------------LVRLERIFRQSEGSDVITLAHQIRQGQTEELDC 512 Query: 385 VFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 F + ++ + ++++Q+ IQ + Q+L + Sbjct: 513 HGDVAFFPVGLYEIKD----------------QVINVVQSALNKGYDIQ---DIQVLASK 553 Query: 445 REGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 GP G+ LN ++Q + ++ + + + EG ++ +N ++NGDIG+ Sbjct: 554 YNGPAGIDRLNAALQQCLNPPEQGKREWKAGYRTFREGDKILQLKNQPDDDVYNGDIGML 613 Query: 502 L------DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 + + G +G + L + ++VHKSQGSE+ + + Sbjct: 614 VEIVYANEDEAGKNRLIVDFEGILVEYTSDNLLNISHAYCISVHKSQGSEYPIVIMPVVR 673 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSS 606 ++ R L+YT VTRA++ L L ++ L IA++ R + L ++ Sbjct: 674 DYGIMLQRRLIYTGVTRAKKSLVLLGEKDALIRGIASQEHHLRSTTLTQRIAA 726 >UniRef50_A0R7T4 ATPase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7T4_PELPD Length = 686 Score = 341 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 135/627 (21%), Positives = 231/627 (36%), Gaps = 106/627 (16%) Query: 24 ALTVAGDEHPAVTLAAAL----LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQ 79 AL + D H LAA L S G+ + + + A + Sbjct: 119 ALRLGTDPHDPFRLAACLQFVMASMADDSGNTLVKPEDVISQAAKELDSENGSN------ 172 Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQ 139 E + + + + + ++ GD L L R E+ + V ++ Sbjct: 173 --IERIELAGELEQMEGREEIVRLGDMLALKRHHATEKRICEALRRRVELPPVPIKSPSE 230 Query: 140 TLDKLFPVSDEI-----NWQKVAAAV-ALTRRISVISGGPGTGKTTTVAKLLAALIQMAD 193 T + + +I Q + + A R ++G GTGK+T L+ L+ D Sbjct: 231 TQRFIESIEQKIGITFSEEQVDSIKMVAAGHRTIAVTGYAGTGKSTVSKALIQLLLSKFD 290 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 ++ + A +G A+ R+ G ++ T+H LG + Q Sbjct: 291 EDQ--VCCMALSGIASDRIRTLSG-----------------FNSFTIHSALGWR--GQEF 329 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 H N L V+V+DE SM++ +M LI+A+ A +I +GD QL + AG +I Sbjct: 330 EHGPDNQLGYQVIVLDEGSMVNSFIMRNLIEAVDRDAVLILMGDPGQLPPIGAGDPFRNI 389 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 + L + YR DS + A Sbjct: 390 IESGIIP-------------------------------VARLTRIYRQSDDSVLSFFAND 418 Query: 374 INRGDKTA--VKTVFQQDFTDIEKRLLQ-----SGEDYIAMLEEALAGYGRYLDLLQARA 426 I RG ++ +DF ++K L S +D + + EE +++ Sbjct: 419 IRRGVVPTGYLQEEGFKDFQFVQKNLPGNYFRLSDKDKVPLREENSQRIIEFIEAKMRAI 478 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVM 483 P I ++QLL +R+GP G LN+ ++ + + + + G V+ Sbjct: 479 SP-YIKNPILDFQLLSPIRKGPLGTEALNDVAQRVFNPGEHEGRAVQVGSVTFKPGDKVV 537 Query: 484 IARN------------DSALG--------LFNGDIGIALDRGQGTR-VWFAMPDGNIKSV 522 N D +FNG +G+ LD R + A P+G I Sbjct: 538 HTLNRDMQIVKAHSLSDYHNNIDSSETKRVFNGSVGVILDGDSDNRELLVAYPEGFIAKY 597 Query: 523 QPSRLPE--HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 L E +A+T HK QGSE+ + + S T ++T + +YTAVTRA++++ + Sbjct: 598 DSLLLSAGVLEMAYALTTHKCQGSEYRFVLIPISSAHTIMLTAQWLYTAVTRAKQKVLMV 657 Query: 581 ADERILSAAIA--TRTERRSGLAALFS 605 + + A T T R + L L S Sbjct: 658 GQKYMFERACKSLTETRRTTVLEKLIS 684 >UniRef50_D2MPX0 Helicase, RecD/TraA family n=1 Tax=Bulleidia extructa W1219 RepID=D2MPX0_9FIRM Length = 727 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 108/556 (19%), Positives = 212/556 (38%), Gaps = 93/556 (16%) Query: 70 TCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA 129 + L + EE + +S ++ ++ DR+Y + E +A N+ Sbjct: 240 ELLEHFIRLSHLEEAIFSS-VFNQILFHGSLVQEDDRIYSLAQYEAEVGIANVLNQFP-L 297 Query: 130 IEVDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 ++E + +++ + E+ Q A +++GGP T L Sbjct: 298 ETLEEYETKELQEEILSLQRELAIVYDETQIQAIHYFFQEDFVILTGGP----GTGKTTL 353 Query: 185 LAALIQMADG--ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 + A +Q+ + APTG+AA RL+E A+T+H Sbjct: 354 IRAFVQLFRRLYPTRNVVCCAPTGRAARRLSEVS-----------------DTKATTIHS 396 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LL + + + +P+ D+L++DE SM+D + ++ A ++ +GD +QL Sbjct: 397 LLQWNLEANVFQKNEEDPIQADLLIIDEFSMVDQWLFYHILRACGLVKKICVIGDEEQLP 456 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SV GA+L D+ G+ L YR Sbjct: 457 SVAPGAILRDLIESKRFGYRQ-------------------------------LTHIYRQK 485 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 S + +LA I + + + F +D E + + +++AL Sbjct: 486 EGSEVIRLALDIRQENLDLMN--FHEDVRFEECAVNEIRPKIQKEIQKAL---------- 533 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEG 479 D + +F + Q++ + G G+ LN +++ + +K H + EG Sbjct: 534 ------DEGL-SFEDIQVISPMYNGTAGIEALNSSLQELLNPHSDHKKEIHHGSRLFREG 586 Query: 480 RPVMIARNDSALGLFNGDIGIALDR-------GQGTRVWFAMPDGNIKSVQPSRLPEHET 532 V+ +N ++NGDIG + + V D + L + Sbjct: 587 DKVLQLKNQPDDDVYNGDIGFIEEIRMENPKQHESLSVIVLFGD-HCVEYSYQNLDKLNL 645 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI-- 590 + +++HKSQGSE+ + + SQ ++ + L+YTA+TR+ +RL ++ + I Sbjct: 646 AYCISIHKSQGSEYPMVIVPICSQHRSMLRKRLLYTAMTRSSKRLWIFGSKEEFERGIHL 705 Query: 591 ATRTERRSGLAALFSS 606 + + R++ L + Sbjct: 706 SEKNVRKTTLVQRLTQ 721 >UniRef50_Q314D9 ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314D9_DESDG Length = 740 Score = 338 bits (866), Expect = 4e-91, Method: Composition-based stats. Identities = 127/579 (21%), Positives = 233/579 (40%), Gaps = 88/579 (15%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 + +G+ + L ++A+ L+ + ++ + L++ + +S Sbjct: 223 CMHEALDQGNCWVEYEDLV-DQANLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRF 281 Query: 101 ILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAA 158 ++ L+ + E+ +A F + + + ++ + L KL E Q A Sbjct: 282 LVA-----LSDILKMEQDIAAIFTKADASNPHFKS--TRNLQKLILRQAETLNEKQLEAV 334 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 AL IS+ISGG G+GK+ TV+ + + + + L+APTGKAA RL E G+ Sbjct: 335 HSALQHSISLISGGAGSGKSYTVSVI----NAVCEECDLEVVLSAPTGKAAKRLEEVSGR 390 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 +T+HRLLG S + NP+ D+L++DE SM+D+ + Sbjct: 391 T-----------------GTTIHRLLGYDGKS--FSKDSNNPIDADILIIDEFSMVDVSL 431 Query: 279 MSRLIDALP-DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 L +A+ ++ +GD +QL V G +L D+ Sbjct: 432 AWHLFNAVDFARTAIVIVGDHNQLPPVGPGNILRDLIH---------------------- 469 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 S +L K R + + + AI +G+ Q D L Sbjct: 470 ---------SNAIPTVILDKVVRQA--GVLKENSTAILKGEVRKTSDASTQGCRD--WYL 516 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNER 457 D A L + + LD L + Q+L +GP G LNE Sbjct: 517 ADQFTDPGAARNFLLDLFDKRLDAL--------GFDLIKDVQVLTPTHKGPLGTKSLNED 568 Query: 458 IEQFMQQKRKIHRHPHSR------WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW 511 +++ +Q++ P ++ + + V+ RN+ L + NG IG +D + Sbjct: 569 LQRLIQKRLWNVSVPETQLGRRSPFLKHDKVIQTRNNYDLNVMNGAIGHVVDVLPNGTLL 628 Query: 512 FAMPDGNIKSVQPS--RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 +G ++ L + + +A+T+HK+QGSEF A +++ + + R L+YT Sbjct: 629 IDF-EGVAVEIEKGSPNLQDIQLAYALTIHKTQGSEFPCAVVVVHKAHSFMHHRNLLYTG 687 Query: 570 VTRARRRLSLYADERILSAAIA--TRTERRSGLAALFSS 606 VTRAR+ + D + +R++ L+ L ++ Sbjct: 688 VTRARKTAIVLGDRWGIRNCAKKCQVDDRKTFLSILLNN 726 >UniRef50_Q6A849 Exonuclease V, alpha chain n=3 Tax=Propionibacterium acnes RepID=Q6A849_PROAC Length = 628 Score = 338 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 177/640 (27%), Positives = 286/640 (44%), Gaps = 80/640 (12%) Query: 7 LLEAVEHKQLRPLDVQFA---LTVAGDEHPAVTLAAALLSHDAGEGHVCLP---LSRLEN 60 L L D+ A + G+ + V+LA AL + G V ++ + Sbjct: 13 LEPFARAGVLEASDIHLANLVCRIGGETNCDVSLAIALSCRELRRGSVFWDPHEIANVVR 72 Query: 61 NEASHPLLATCVS----------EIGELQNWEECLLASQAVSRGDEPT---PMILCGDRL 107 + P + + E W L AS ++ D+P P L + Sbjct: 73 QQILDPAIPDIETSDQAALFAELEWPPPGEWLSTLEASPVIAGRDDPLNRLPARLDDGLV 132 Query: 108 YLNRMWCNERTVARFFNEVNHAIEVD-----EALLAQTLDKLFPVSDEIN-WQKVAAAVA 161 YL + W E VAR + + +++ + L ++ Q AA A Sbjct: 133 YLEKYWQAEHDVARDLATLAADPPSQGPVSADDVVSSISNALAASGIMLDPAQADAAIAA 192 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 + R+SV++GGPGTGKTTTV LLAAL Q AD + LAAP+GKAAARL +S+ + Sbjct: 193 IMHRVSVLAGGPGTGKTTTVCALLAAL-QQADPHLGAVALAAPSGKAAARLRDSVSQVSE 251 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 ++P + K I DA+T+H LL Q + + L V+VVDEASM+ LP+ + Sbjct: 252 RMP---DDLKPIVADATTVHSLLKWQGPGTSFGYDEQHKLPFGVVVVDEASMLSLPLAAS 308 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L+ A+ R+I +GD QL SV+AG+VL DI + A+ Sbjct: 309 LLSAIGPQTRLILVGDPGQLVSVDAGSVLADIVSSAD----------------------- 345 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF--------------- 386 A + + +L ++R D I +L+ A+ GDK+ V Sbjct: 346 ---ALQAQLPVTILTCNHRSRGD--IARLSEAVREGDKSTALDVLATAAGVTHDSPSPDS 400 Query: 387 ------QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 ++ T I+ + + E +A G + L + ++ + ++L Sbjct: 401 IATISGRRSITWIDADPASITMADLPAVAEVIARTGARMLELAQASADAAALKLVDAHRL 460 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 LCA REGP+GV ++R+ + + RW G ++ N + LG+ NGD G+ Sbjct: 461 LCAHREGPYGVDEWSQRMVTVLSD--VLPGVGQGRWVLGETAIVTHNLAQLGVNNGDCGV 518 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 ++ + P G + + S +P + AMT+HK+QGS+F ++LP +P+ Sbjct: 519 IVETRPVPTIALPGPGGVPRRLPCSLIPSLQPLQAMTIHKAQGSQFTDVTVVLPPPDSPL 578 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 ++REL+YTA+TRAR L++ + AI +RRSG+ Sbjct: 579 LSRELLYTAITRAREHLTVVGTRESVERAIDRANDRRSGI 618 >UniRef50_Q0IBA7 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Synechococcus RepID=Q0IBA7_SYNS3 Length = 559 Score = 337 bits (864), Expect = 9e-91, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 243/570 (42%), Gaps = 54/570 (9%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLAS 88 + P V L AL + G + L L + + G + E L+AS Sbjct: 28 QNSEPLVELLRALTT-ALSRGEISLQLHD-------GAKVPDGIETDGWPRVHREALVAS 79 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS 148 + + ++L + L R + + + T +L + Sbjct: 80 GWLD--GDQAVLVLNHNSLSWRRWHGAMQELELELQRRCFQAPIHATNHGATTSRLSNNN 137 Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208 D Q+ A + ++SGGPGTGKT+TV +L L + R RLAAPTGKA Sbjct: 138 DLSPEQQAAVRAIDRYGVVLLSGGPGTGKTSTVLHML--LRAFEKQPKLRARLAAPTGKA 195 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 A RL +++ L +TLHRLL A+PG H NPL LD+L+V Sbjct: 196 ARRLQDAIRSNPITATL----------PCTTLHRLLEARPGG--FGRHRRNPLELDLLIV 243 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 DE SM+DL + L+ ALP H ++I +GD QL + GA+ + + A Sbjct: 244 DEMSMVDLELGRALLSALPTHCQLILVGDSAQLPPIGTGAIWQHLQEPNQNRRFKDGAIT 303 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 L+ + +L LL+ D G+ + ++ KT+ TV Sbjct: 304 LTEVYRNR---------GALAQMSALLR-------DQGLIPFWSQLSSLPKTSNITVSYS 347 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 I + + + ++ L+E + G + + ++ + +LC R GP Sbjct: 348 QTRQIPEAVHAALTRHLDHLKEKASALGINAHGQPDQQQAQDLLNILDTLMVLCPRRRGP 407 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT 508 +GV +++ + + RW G PV+ + N LGL NGD+G+ + G Sbjct: 408 WGVDAVHQNL---------LDGSEPQRWPSGLPVLCSENQPELGLANGDLGVMVGEGVQQ 458 Query: 509 RVWFAMPDGNIKS----VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRE 564 R F D + +S P+RL E A+T+HK+QG E D L+ P+ ++ Sbjct: 459 RALFLCSDPSGESRHALYHPARLRHLEPALALTIHKAQGCEMDKVLLLWPNFDDRQIS-S 517 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRT 594 L+YTA+TRA+++L L+AD + L + R+ Sbjct: 518 LLYTAITRAKQQLLLFADPKALDLGRSARS 547 >UniRef50_B0SIS5 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS5_LEPBA Length = 600 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 140/558 (25%), Positives = 231/558 (41%), Gaps = 60/558 (10%) Query: 91 VSRGDEPTPMILC----GDRLYLNRMW----CNERTVARFFNEVNHAIEVDEALLAQTLD 142 + + + P ++ +RLYL + E + F N + + Q Sbjct: 52 IDKMKDYFPFVIERTGKENRLYLQKSHSEKRNFESLLFTFLNHKTNQTKNTTITADQIKT 111 Query: 143 KLFPVSDE-----INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 + + E Q+ +T VISGGPGTGKTT V+ +L A ++ Sbjct: 112 IISGLETESKIKLAEEQRETIQDVITSNFRVISGGPGTGKTTVVSFILMAFDRLKLLPSM 171 Query: 198 -RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHH 256 RI L APTG+A+ RLTES+ + L + T+H LL P + + + Sbjct: 172 ERIALVAPTGRASQRLTESIQRNLEKFQADPSLTS--NFRGQTIHNLLKINPTTNQAKFG 229 Query: 257 AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAY 316 L D +++DE SM+DL +M+ A+ +I LGD +QL SV G VL D+ Sbjct: 230 EKRYLPYDFIIMDETSMVDLKLMNLFFSAIHFDTHIILLGDPNQLPSVGQGEVLTDLITT 289 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 + LS L H +E + + + ++S+ S++ L I + Sbjct: 290 LKN-----KKEFLSELNSNHR-FSNDSEFSVFAEIV---KQSFDTNSNTKPFPLPKMITK 340 Query: 377 GDKTAVKTVFQ-----------QDFTDIEKRLLQSG-----EDYIAMLEEALAGYGRYLD 420 D + +I ++S E + + + + Sbjct: 341 SDLNLKHDFVWIQGDKKTKSTNGNHPEIHDWNIESMVPFLWETFYLHTANKTSKFHWEPN 400 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI-----EQFMQQKRKIH----RH 471 L+ + NEY+ L LR G FG+ + +I +Q K + H + Sbjct: 401 ALKDPKNKFIFESIVNEYRCLTILRNGYFGIEAIQGQILRYAKKQLTNPKNEFHLKYRQL 460 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHE 531 S ++EG P++I ND LFNGDIG+ + R F + D + S LP+HE Sbjct: 461 SKSFYFEGMPIIIQSNDPMRKLFNGDIGLVVSIHSELRAVFPIED-RLYSFALDTLPDHE 519 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRT---------PVVTRELVYTAVTRARRRLSLYAD 582 + +T+HKSQGSE+ L LP ++ R ++YTA+TRA+ R+ L D Sbjct: 520 PAFFLTIHKSQGSEYKSILLYLPPMNVLDVDSENNLSILNRRILYTAITRAKERVILLGD 579 Query: 583 ERILSAAIATRTERRSGL 600 + + + +R +G+ Sbjct: 580 FQTWEFGLQSFRKRYTGI 597 >UniRef50_Q3BM41 Exodeoxyribonuclease V alpha chain n=8 Tax=Xanthomonas RepID=Q3BM41_XANC5 Length = 791 Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 175/536 (32%), Positives = 234/536 (43%), Gaps = 112/536 (20%) Query: 181 VAKLLAALIQMADG---ERCRIRLAAPTGKAAARLTESLG-------------------- 217 +A+LL I A RI LAAPTG+AA R+ ESL Sbjct: 232 IARLLLLRIAQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLP 291 Query: 218 -------------------------------KALRQLPLTDEQKKRIPEDASTLHRLLGA 246 A + + +P ASTLHRLLG Sbjct: 292 APSGSAGLITSTHPTNAAAPASTGAGLELQTHAASEQGGPPSWEALLPSGASTLHRLLGV 351 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 P S H+A NPL D++VVDEASM+DLP+M +L+DA+ D ++I LGD DQL SVEA Sbjct: 352 IPDSPHFHHNADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSVEA 411 Query: 307 GAVLGDICAYANAG--FTAERARQLSRLTGTH-----VPAGTGTEAASLRDSLCLLQKSY 359 G VL I A G E A+ L L G+ + T + L L + Y Sbjct: 412 GDVLAAILQAAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRSGGLDGHRVHLLRGY 471 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R D + LA AI GD + + + GED +A+ +AL + R L Sbjct: 472 RQAQDFALAPLADAIRAGDADTALALLRSGELPG-VHFHEDGEDPLALGRDALLAHWRAL 530 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH--PHSRWY 477 Q +P ++ +LL A+R GP G GLN RIEQ + R S W+ Sbjct: 531 ANAQ---DPAAALRDAGRLRLLTAVRAGPQGARGLNARIEQLLADTGSGARRLGGASPWF 587 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQG------------------------------ 507 +GR ++I N GLFNGD+GI L G Sbjct: 588 QGRLLLITENSYRHGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSA 647 Query: 508 --------------TRVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 WF DG ++ P+ LP HE+ +AMTVHK+QGSEFD L Sbjct: 648 RHDAPATDRRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQ 707 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE 608 LP++ V++REL+YT +TRARR L L A E ++ AA+A R SGLA +++ Sbjct: 708 LPTRDARVLSRELLYTGITRARRALHLAASEAVMRAALARHAARISGLAWRLGAKD 763 >UniRef50_A9BB03 Possible exodeoxyribonuclease V 67 kD polypeptide n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BB03_PROM4 Length = 574 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 142/579 (24%), Positives = 233/579 (40%), Gaps = 70/579 (12%) Query: 31 EHPAVTLAAALLSHDAGEGHVCLPLSRLEN-NEASHPLLATCVSEIGELQNWEECLLASQ 89 P + +L G + + L + E P T + W E Sbjct: 30 SQPHLQDLINILLESLSRGEIYISLDESKPPTEVKAPGWPTEHLRAIKQSGWLEQ----- 84 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERT--VARFFNEVNHAIEVDEALLAQTLDKLFPV 147 +P+IL +RL R W E + + N ++ A++ D + Sbjct: 85 ------STSPIILENNRLGWYR-WDYEMKGIIKDLIKKSNQRPKL--AIIEVDKDAIKST 135 Query: 148 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 + Q +A + + ++SGGPGTGKT+T+ ++L ++ RI LAAPTGK Sbjct: 136 VKLNSEQLLALESITSHNLVLLSGGPGTGKTSTIVEMLR--KSLSIDLELRIGLAAPTGK 193 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 A RL ESL ++ +L + K TLHR L A + + N L LD+LV Sbjct: 194 ATRRLQESLQSSIEELN-PQVKDKFYRIPCLTLHRWLKAN--ERGFSKNETNQLDLDLLV 250 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DE SM+D+ +M +++ALP ++++ +GD +QL V +GAV ++ N Sbjct: 251 IDEMSMVDISLMRGVLNALPKQSQLVLVGDPNQLPPVGSGAVWNELLKSQNQEILGSSRI 310 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 LS++ R + LL K R DS I ++ Sbjct: 311 NLSKVYRN-------------RGQIALLAKMIR--EDS-FNVFWNQIQNLPLSSNVKSHS 354 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP----------DLIIQAFNE 437 Q + LL+ + A +++ L+ L+ + +++ E Sbjct: 355 QKKNSMPSFLLEKLKAKQAEIQKILSNSLETLNTVNTYPATINNPEFDNTIKKLLKTLEE 414 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +LC R G + V +++ + W EG PV+ N LGL NGD Sbjct: 415 LAVLCPRRFGLWSVEHVHQAL------LGNSLEEGVMHWPEGTPVICGENQQELGLSNGD 468 Query: 498 IGIALDRGQGTRVWFAMPDG----NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 IG+ R+ F + K + PSRL + + +A+T+HKSQGSE + L+ Sbjct: 469 IGVIFGSNNERRLIFRVITEKQTLEPKLIHPSRLRKVDPAYALTIHKSQGSEVNDVVLLW 528 Query: 554 PSQRTPV------------VTRELVYTAVTRARRRLSLY 580 P + L+YTA+TRA+ + L Sbjct: 529 PDDSYICDQQIKQDKRNENYDKSLMYTALTRAKNKFDLI 567 >UniRef50_A4VZ41 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=73 Tax=Streptococcaceae RepID=A4VZ41_STRS2 Length = 855 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 137/625 (21%), Positives = 234/625 (37%), Gaps = 101/625 (16%) Query: 6 QLLEAVEHKQLRPLDV-QFALTVAGDEHPAVTL--AAALLSHDAGEGHVCLPLSRLENNE 62 QL+E V+ D L +A D +L+ G + + Sbjct: 214 QLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVE----ARDL 269 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 L S EL + ++ + G +++ N ++ E + Sbjct: 270 LEATLELLEKSRHTELDPAAVAKELTGLIADDK----VQQEGTKIFDNSLYFAEHGIHTN 325 Query: 123 FNEVNHA------IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + D L+ + ++ + N QK A A+T + +++GGPGTG Sbjct: 326 LTRLMGKNGFKPFPRADVEAAIAELESISSLTYD-NIQKEAIVQAITNPLFILTGGPGTG 384 Query: 177 KTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 KTT + ++A + E C + LAAPTG+A R+ E G Sbjct: 385 KTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRMNELTG------------- 431 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 ++T+HR LG G + + + L D ++VDE SM+D + ++L + Sbjct: 432 ----LPSATIHRHLGLVEGQEE--SYRDDYLDADFIIVDEFSMVDTWLANQLFQNISSQT 485 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 +V+ +GD +QL SV G VL D+ Sbjct: 486 QVLIVGDAEQLPSVSPGQVLADLLKIDKLPS----------------------------- 516 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 L++ YR DS I LA+ I +G A+ + F++ D + ++ + I L E Sbjct: 517 --ITLERIYRQSDDSTIVTLASQIRQG---ALPSDFREKKAD--RSYFEAQNEQIPALIE 569 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 + G + NE Q+L + G G+ LN + + + Sbjct: 570 RIVGAAIKSGI------------PANEVQILAPMYRGAAGIDQLNTMTQALLNPLEEGEL 617 Query: 471 ---HPHSRWYEGRPVMIARNDSALGLFNGDIGIALD------RGQGTRVWFAMPDGNIKS 521 H + +G V+ ND+ +FNGD+G D DG+ + Sbjct: 618 EFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDEITINFDGSEVT 677 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 + + +AM++HKSQGSEF L + ++ R LVYTA+TR++ +L L Sbjct: 678 YPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLILLG 737 Query: 582 DERILSAAIATR-TERRSGLAALFS 605 + A+ T R++ L F Sbjct: 738 EISAFDYAVKNAGTVRKTYLVPRFQ 762 >UniRef50_C7XTE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTE9_9LACO Length = 833 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 121/557 (21%), Positives = 202/557 (36%), Gaps = 90/557 (16%) Query: 80 NWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR---FFNEVNHAIEVDEAL 136 ++ Q D+ I +Y + E +A+ + + VD Sbjct: 276 QLDQASFNQQLNELVDQEQIQIEDHQHIYETAFYNAEWKIAQKLVELMKFSDDRPVDHQD 335 Query: 137 LAQTLDKLFPVSDEINWQKV--AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 Q + ++ Q A AL + +++GGPGTGKTT V L+ +++ Sbjct: 336 FQQAISEIEADKGYQYDQVQTSAIKEALESPVMLLTGGPGTGKTTIVNGLVETYLKLHPK 395 Query: 195 -ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG--SQ 251 I L APTG+AA ++ G +AST+HRLLG Sbjct: 396 LSEEDIMLVAPTGRAAKQINSVTGI-----------------EASTIHRLLGLTADINDD 438 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 +L +PL +L+VDE SM L + + LI A+ ++ +GD DQL SV G V Sbjct: 439 QLMQMDFDPLDAKLLIVDEMSMTSLALFTALISAVNQGTHLVLVGDCDQLPSVGPGQVFY 498 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 D+ A L+ YR S S I LA Sbjct: 499 DLLAAEGIPQR-------------------------------RLKHIYRQSSHSSIIPLA 527 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI 431 IN G TV Q+ F + A L + + L + + Sbjct: 528 HRINEG------TVTQELFAPESANQYAHRQFICASLNNIPQLITQAVKLYHEKHDV--- 578 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH---RHPHSRWYEGRPVMIARND 488 + Q+L ++ G G +N ++ + + + G VM ND Sbjct: 579 --PIMDIQILASIHGGVAGTVNINRVLQATLNPDKPTKPAIQLGSRILRVGDKVMQTVND 636 Query: 489 SALGLFNGDIGIALDRGQGT------------RVWFAMPDGNIKSVQPSRLPEHETTWAM 536 +FNGD+GI +V ++ ++ + + + + M Sbjct: 637 PDKNVFNGDLGIIKTIEGQNVIHGAPKAVAKQKVVVDFDGAEVEYLRLNEINALQLAYCM 696 Query: 537 TVHKSQGSEFDHAALILPSQRTP-------VVTRELVYTAVTRARRRLSLYADERILSAA 589 T+HK+QGS+ +I+ P ++ R L+YTAVTR+ + L + + Sbjct: 697 TIHKAQGSQAPVVIIIMTDDYFPRRPGIPTIMHRNLLYTAVTRSSQALLMVGSPQAFVNC 756 Query: 590 IATRTE-RRSGLAALFS 605 + T+ R++ L + Sbjct: 757 AQSPTKYRQTTLTKRIT 773 >UniRef50_B7C7R4 Putative uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7R4_9FIRM Length = 351 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 91/416 (21%), Positives = 171/416 (41%), Gaps = 79/416 (18%) Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 +I+L APTG+A+ RL + D+ T+H LL Sbjct: 6 PDSKIQLCAPTGRASKRLAQLSNC-----------------DSRTIHSLLQWNLEDNSFG 48 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + +PL +D ++VDE SM+D + ++L+ ALP+ R++ +GD DQL SV G VL D+ Sbjct: 49 KNEDDPLDVDFIIVDEFSMVDTHLFAQLLKALPNRCRILLIGDEDQLESVGPGKVLEDLI 108 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 L+K +R + SGI LA I Sbjct: 109 KSNVID-------------------------------TVHLKKIFRQSNGSGIVTLAKEI 137 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 ++ IE+ + + +AL Y + +DL Sbjct: 138 RE----ETTCHYEDGVEFIERTTPK--------IMDALIDYVKDMDL------------- 172 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSAL 491 + Q+L + +G G+ +N +++ K + + + + E VM+ +N Sbjct: 173 -DSMQILAPMYKGVAGIDEINRQMQVLFNPKSPQKNQMKVGTTIFRENDKVMLLKNLPDD 231 Query: 492 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 ++NGDIG ++ V N+ L + W ++VHKSQG+E+ Sbjct: 232 DVYNGDIGTIVEIDTKRNVISVDFTNNVVDFSTDFLYYLKHAWCISVHKSQGNEYQSVFC 291 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFS 605 I+ ++ + L+YTA++RA+++L + ++++ + + + R++ L + + Sbjct: 292 IVDVNAKNMLEKRLLYTAISRAKKQLYIIGNKQLFETQVKLKQKRVRQTTLREMIN 347 >UniRef50_C5NYT1 Helicase, RecD/TraA family n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYT1_9BACL Length = 777 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 126/622 (20%), Positives = 249/622 (40%), Gaps = 98/622 (15%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALL--SHDAGEGHVCLPLSRLENNEA 63 L++ ++ + +D + +A ++ + S G+ + + L N Sbjct: 190 LIKDIKGINFKTVDKIAETNEIAANDRERILYGFIYTINSFCFSTGNTYISKNTLLYNTF 249 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + + + +E +L+S + +I DR++L ++ +E ++ Sbjct: 250 NILYSSR------NIAVAKEDILSS--YDYALDSGKLIEIEDRVFLPEIYYSEYSIYSDI 301 Query: 124 NEVNHAIEVDEALLAQTLDKLFP-VSDEIN-----WQKVAAAVALTRRISVISGGPGTGK 177 ++ +E D + LDK V DE+ Q A + ++++GGPGTGK Sbjct: 302 SKRLE-LEDDFDISDSLLDKYIEEVEDELEISYDIVQIAAIKNCIKNNFAILTGGPGTGK 360 Query: 178 TTTVAKLLAALIQ--------MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 TT + ++ + + D R + L APTGKAA R++ES G Sbjct: 361 TTIILAVIKIFQKIKNYSIHDLLDESRSILTLCAPTGKAAKRMSESTGFY---------- 410 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLR-HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 AST+H+ +G + + + + +++++DE+SMID+ +M L+ + Sbjct: 411 -------ASTIHKAIGWSTEDENMEEFVSEKHIKSELVIIDESSMIDVFLMYNLLKIINK 463 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 A++I +GD DQL S+ G VL D+ S Sbjct: 464 DAKIILVGDNDQLPSIAPGNVLNDLIN-------------------------------SK 492 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 S L K +R +++ + +I +L++ +D Sbjct: 493 AISTVKLNKIFRQSE---------------HSSIINISHSIKNNIPFDVLENFDDK---- 533 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI 468 E A ++++ A + + A Q+L + +G G+ +N I+ + Sbjct: 534 EFISANKNEMINVISAIYDDLIKGSAKENIQILAPIYKGTSGINEINMAIQSRFNDNEEQ 593 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA--LDRGQGTRVWFAMPDGNIKSVQPSR 526 + + VM N +FNGDIG + + DGN + + + Sbjct: 594 IEYGELIYKVNDRVMQLVNRPEDNIFNGDIGYIEQIYKEGNKFKIVIDYDGNYVTYEKTE 653 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L + ++A ++HK+QGSEF++ + ++ + L YTA+TRA+++L L D ++ Sbjct: 654 LNQITLSYACSIHKAQGSEFENVIIPFIDNYNFMLNKNLTYTAITRAKKKLILCGDSKVF 713 Query: 587 SAAI--ATRTERRSGLAALFSS 606 +I R++ L F++ Sbjct: 714 YKSIEPTNVVTRQTSLEWFFTT 735 >UniRef50_C6J5U6 Exodeoxyribonuclease V (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5U6_9BACL Length = 378 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 93/426 (21%), Positives = 162/426 (38%), Gaps = 81/426 (19%) Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 I L APTG+AA +L E G ++ST+H +LG +PG++ Sbjct: 6 PEASIGLCAPTGRAARKLGELTGM-----------------NSSTIHMMLGFRPGAE-PE 47 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + PL D++ DE SM DL + L A+ + +V+ +GD DQL SV G VL D+ Sbjct: 48 YGDDMPLPFDLIFTDEVSMKDLQLAYHLFQAIGPNTKVVLIGDSDQLPSVGPGNVLHDMI 107 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 L + +R +S I A I Sbjct: 108 TAGVPH--------------------------------VRLTEIFRQAQESQIIMNAHRI 135 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 N G++ + + DF IE+ + + + R+LD Sbjct: 136 NNGEQIVIDK-NKDDFFFIEQPEPERIAHLVVL------SVLRFLDKGHK---------- 178 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSAL 491 + +L +++G G LN ++ + + + + +G V+ RND Sbjct: 179 LEDILVLSPMKKGVIGTEELNNALQAAVNPPALDKAEIKTVGRIYRQGDKVIQIRNDYKK 238 Query: 492 GLFNGDIGIALD----RGQGTRVWFA-----MPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 + NGDIG+ + + + + G + L + +A+T+HK+Q Sbjct: 239 KILNGDIGVVIGTALVKDEEGELTDEIGLACDFHGKVVVYSKHELKDLLLAYAITIHKAQ 298 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGL 600 G + + + + ++ R L+YT +TRA + + LS AI+ +R + L Sbjct: 299 GGQAPVVIMPVSTSHYVMLARNLIYTGLTRAEGVCVMIGTRKALSVAISNNKMVQRNTAL 358 Query: 601 AALFSS 606 S Sbjct: 359 RERIES 364 >UniRef50_A8S078 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S078_9CLOT Length = 655 Score = 323 bits (829), Expect = 9e-87, Method: Composition-based stats. Identities = 126/576 (21%), Positives = 215/576 (37%), Gaps = 93/576 (16%) Query: 41 LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM 100 + + EGH+ +L E + L + + L +Q+V + E + Sbjct: 130 CMEQENQEGHLF--QEKLLFQEKVYEKLNYGYEKGTVTE-----LEIAQSVYKMVEAGKL 182 Query: 101 ILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAA 158 LY + + E A+ + E + L + L K QK A Sbjct: 183 HFESGVLYAEKYYRYEHEAAKALAALLMQKEKEPEQLEEFLSKAQEELGICLAAKQKEAV 242 Query: 159 AVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 A + ++I+GGPGT TTV K++ + + G + L APTG+A+ R+ E G Sbjct: 243 KNAFSFLFTIITGGPGT-GKTTVEKVILYIHEKLRG--GSVLLMAPTGRASRRMAECTGC 299 Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 DAST+H LG S+ + + + L D+++VDE SM+D+ + Sbjct: 300 T----------------DASTMHSALGLV--SEEMESESCDFLEADLILVDEMSMVDMRL 341 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 + RV+ +GD +QL+SV G V ++ Sbjct: 342 AYEFFTRIKRGTRVVLIGDVNQLSSVGPGNVFRELIQCG--------------------- 380 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 + +L + +R G S I A + L Sbjct: 381 ----------AVPVTVLDQIFRQGKGSLIAANAYKMLNNSA-----------------AL 413 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE-GPFGVAGLNER 457 + GED++ + + ++ R +L I ++ Q+L R+ G V LNER Sbjct: 414 EYGEDFVFLPADNAECAAEIVEREYRRMTAELGI---DQVQVLTPYRKSGAVSVNALNER 470 Query: 458 IEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA----LDRGQGTRV 510 + + K + + + E V+ +N + NGD G LD Sbjct: 471 LWNLVNPKMPGKAEMKVRGRIFREKDKVIHNKN--KNEISNGDTGFITGIYLDEDNLEVS 528 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 PD + E +A TVHKSQGSE+ L ++ R ++YTA+ Sbjct: 529 RIEFPDNRCVEYSSEDMEMIEHAYATTVHKSQGSEYSVVILPWMPMFYKMLRRNILYTAI 588 Query: 571 TRARRRLSLYADERILSAAIAT--RTERRSGLAALF 604 TRA+ +L L ++ + A+ +R + L + Sbjct: 589 TRAKVKLILVGSKQAVYRAVHNTESDKRNTRLGEMI 624 >UniRef50_Q04EW7 ATP-dependent DNA helicase, RecD/TraA family n=2 Tax=Oenococcus oeni RepID=Q04EW7_OENOB Length = 766 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 144/601 (23%), Positives = 233/601 (38%), Gaps = 101/601 (16%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 +F ++ + +LL+ G L +L N ++ + E + Sbjct: 203 ARFNNFNHQEDQIDGAVIFSLLTAAQESGDTYLSKDQLVKN------VSELLESGPEFFD 256 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 +E L +++ R + + + R+ L + E +V V+ + Q Sbjct: 257 -QEILTEIESLQRKGQ---LFISDSRVSLAEYYRLEESVIDDLKRVSKNKQRSFTGKLQL 312 Query: 141 LDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR-- 198 +K S + QK A +I++++GGPGTGKTT + ++ + A+ Sbjct: 313 SNK----SLLDDKQKKAVESVFKNQITILTGGPGTGKTTVIKTVIQQWERAAEKSNSENK 368 Query: 199 -------IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 + LAAPTG+AAAR+TE G+ A T+H LLGA Sbjct: 369 FKQTKKLVLLAAPTGRAAARITEVTGR-----------------QAVTIHHLLGATSDG- 410 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 N L ++V+DE SM+DL + + A+P+ R++ +GD+DQL SV AG +L Sbjct: 411 YFDFDENNQLQAGLIVIDEMSMVDLQLFQHFLRAVPNGCRLLLVGDKDQLPSVGAGQILT 470 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 D+ LQ ++R SGI L+ Sbjct: 471 DLILSDQFK-------------------------------TIELQINHRQTKGSGIDLLS 499 Query: 372 AAINRG--DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD 429 + RG D+ + F +E+ L+ G R L Sbjct: 500 QDLKRGIVDQKMFENGNDISFFSLEEYQLE-------------QGISRILSAAMRFGIKK 546 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDS 489 + Q++ V LN+ ++ + + + G VM N+ Sbjct: 547 ------EDLQIITPTNR---LVELLNQLARPYLIDRDIRIDDLSTAFLAGDRVMQQENNP 597 Query: 490 ALGLFNGDIGIALDR--GQGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 G+ NGDIG + R F D GN + + + + ++A TVHKSQGSE Sbjct: 598 EKGVNNGDIGYVIATQLSGPLRSRFISVDFLGNTVMYKENEINQLRLSYASTVHKSQGSE 657 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE-RRSGLAALF 604 F + +L S VTR LVYT VTRA + L L +R + AI T R++ L L Sbjct: 658 FRNVIFVLTSTFNNFVTRNLVYTGVTRAEKSLILIGSQRAFTDAINNPTPLRQTNLVKLL 717 Query: 605 S 605 + Sbjct: 718 N 718 >UniRef50_Q30PF5 ATPase n=2 Tax=Campylobacterales RepID=Q30PF5_SULDN Length = 745 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 121/629 (19%), Positives = 226/629 (35%), Gaps = 124/629 (19%) Query: 23 FALTVAGDEHPAVTLAAA----LLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGEL 78 AL + + +++A LL++ +G+ C+ L E+ EL Sbjct: 193 LALKMGVKKDDENRISSAMDYVLLNYCEQQGNSCVAKEIL-------------FFELDEL 239 Query: 79 QNWEE--CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL 136 + + L + V R E + +++ +R+ R++ E+ + F +D Sbjct: 240 LTFSDKSYLYEASLVERVSEGSIVLMKNERVSPARLYDAEKYLYDEFKRRAK---LDNGG 296 Query: 137 LAQTLDKLFPVSDEI---NWQKVAAAVA-LTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 + LD LF ++ + QK A I + G GTGK+TT +L L Sbjct: 297 FTKDLD-LFLSEHDLKLGDEQKEALKKINEGSSILFLVGYAGTGKSTTSRSILDLLNTKY 355 Query: 193 DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 D + I A +G A+ R+ ++ G +++T+ LL Sbjct: 356 DKK--EIITCALSGIASQRIADTTG-----------------YESATIQSLL-------- 388 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 ++ + V+++DEASMI+ + +RL+ + A +I +GD QL + AG VL D Sbjct: 389 VKFEERDEFPYSVVLIDEASMINSSLFARLVRKVSKSALLIVVGDDAQLPPIGAGNVLSD 448 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 + A + L K YR D I +A Sbjct: 449 VLTLCLAP-------------------------------IVKLTKIYRQSEDKAITVIAN 477 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLL----------------QSGEDYIAMLEEALAGYG 416 I G K + +DF ++ + Q E+ ++ Sbjct: 478 DIRLGVVPEYKREY-EDFEFVDVSMQNYYALKNQLTQAELSSQREENSAQIVAVIAHKVV 536 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK-RKIHRHPHSR 475 ++ + R I + N +Q++ ++ G G LN ++ + +K + Sbjct: 537 ESIEKARYRLSNKQIKEYLNYFQVITPMKGGTLGSNNLNIVLQNYFNPNPKKCVKKGGVE 596 Query: 476 WYEGRPVMIARN----------------DSALGLFNGDIGIALDRGQGTRVWFAMPDGN- 518 + V+ +N + +FNG G+ + F Sbjct: 597 FRLMDKVVHTKNENMTSWSSEGFKNSEDSAQRRIFNGMSGLLFKIEEDDEQAFVFYPNED 656 Query: 519 -IKSVQPSRL-PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 + + L ++A+T+HK QG E+D + + + +L+YTAVTRA+ + Sbjct: 657 VVVVYEYEELRSHLMLSYALTIHKVQGMEYDIVVIPMSFSHYIMHNTKLIYTAVTRAKHK 716 Query: 577 LSLYADERILSAAIATR--TERRSGLAAL 603 L + +A T R + L L Sbjct: 717 CILVGESMAFESACKKLDITARDTVLLEL 745 >UniRef50_C9LC87 Helicase, RecD/TraA family n=6 Tax=Clostridiales RepID=C9LC87_RUMHA Length = 747 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 128/584 (21%), Positives = 217/584 (37%), Gaps = 105/584 (17%) Query: 38 AAALLSHDAGE-----GHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVS 92 + +S+ E GH+ L L + + + E + + + Sbjct: 222 ISGCVSYVLREAMKQNGHLYLEQEILVKDALKVLNKEPDLQPVTETEILK-------VLY 274 Query: 93 RGDEPTPMILCGDRLYLNRMWCNERT----VARFFNEVNHAIEVDEALLAQTLDKLFPVS 148 R +++ +R+Y+ + E +AR +E A+ +++ L D +S Sbjct: 275 RLVMQDSIVVEENRVYITKQHQEEEDTASMIARKLHEQIPALTIEKELEEAQEDLNITLS 334 Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-RCRIRLAAPTGK 207 ++ QK A + I +I+GGP T +L ++ + + ++L APTG+ Sbjct: 335 EQ---QKEAVRMVFANPICIITGGP----GTGKTTVLKVILYIYQKKCGNEVKLMAPTGR 387 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 AA R+ ES G DA+T+H LG + L D + Sbjct: 388 AARRMAESTGNG----------------DATTMHMALGLFGDGDYEA--LTDKLSADFIN 429 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 DE SM+D+ + + ARV+ +GD QL SV AG V + Sbjct: 430 ADEVSMVDMHLAYEFFYKIKAGARVLLVGDVHQLPSVGAGDVFRQLILCGKIP------- 482 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 + +L YR G DS I A IN G + Sbjct: 483 ------------------------VTVLNLVYRQGKDSNIPINAQLINEGK---TNLQWG 515 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR-E 446 DF +E SG D A + + + YL +Q + Q+L + Sbjct: 516 DDFQMVEC----SGADAAAQIVKNI-----YLKEIQMYG--------MEQVQILSPYKVR 558 Query: 447 GPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG---- 499 GV LN ++ + ++ + EG ++ +N NGD+G Sbjct: 559 SAAGVLELNRSLQDEVNPPVSGKRELHLGGEIFREGDRILQNKNTEFA--SNGDLGTLVQ 616 Query: 500 IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP 559 IA D V DG + ++ E A+T+HKSQGSE + P Sbjct: 617 IAEDEDNNPLVQIVFTDGRRVKYEAEQVEMIEHANAVTIHKSQGSECQVVIIPWLKAFYP 676 Query: 560 VVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLA 601 ++ R + YT +TRA++R+ + + + + AI T R++ LA Sbjct: 677 MLKRNIFYTGITRAKQRVYIVGEWKAVCQAIHTDDTGTRKTMLA 720 >UniRef50_A5IZI9 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IZI9_MYCAP Length = 756 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 118/522 (22%), Positives = 202/522 (38%), Gaps = 97/522 (18%) Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVAL 162 RL LN ++ E VA+ I++ ++ L Q ++ L QK A A AL Sbjct: 311 DSKRLSLNEVYEQELFVAKKL------IKIRDSELKQQVNPL-TSQKLAEEQKKAYASAL 363 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 +SVI+G PGTGK+ +A ++ L++ ++ I + PTG+A+ L G Sbjct: 364 NNPLSVITGYPGTGKSYLIAYIVETLLKDKHYKKKDIAVLTPTGRASTILAYKTGI---- 419 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280 +A T+H L + V+V+DE SM+ LP+M Sbjct: 420 -------------EARTIHSFLKLSKPDEDDSFIESFEKENPIKVVVIDEFSMVSLPIMY 466 Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 L+ R+I +GDRDQL + G +L DI Sbjct: 467 ELLKTCTSIERLILVGDRDQLPCIGKGNLLEDIINSKKLP-------------------- 506 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA--AINRGDKTAVKTVFQQDFTDIEKRLL 398 +L++ +R I AIN + T ++ IE+ + Sbjct: 507 -----------TFVLKEIHRTDK---IDIFEHFIAINDNKVPKIDT---ENVKFIEQNGI 549 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE--GPFGVAGLNE 456 + + + EE + Y + + +L G G+ +N+ Sbjct: 550 LFLNNIVKIYEEKVNKY------------------SIDNVIILLPSYLELGQPGINEVNK 591 Query: 457 RIEQFMQQ----KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF 512 R++++ + K+ + H + + G V+ ND +FNG+IGI + ++ F Sbjct: 592 RLQEWNIKRTGAKKNLSIHNNLTLFVGDRVIQTVNDYDKNVFNGEIGIVEEINTDSKNTF 651 Query: 513 A---MPDGNIKSVQPSR-LPEHETTWAMTVHKSQGSEFDHAAL-ILPSQRTPVVTRELVY 567 G S L +A+TVHK QGSE IL ++ + T++ +Y Sbjct: 652 IIVGFGQGKKVRYNRSEILENLSLAYAITVHKFQGSEASCVIFGILKNRVEHMFTKKFMY 711 Query: 568 TAVTRARRRLSLYADERILSAAIATRT---ERRSGLAALFSS 606 TAV+RA+ L L + + I +R + + L +L Sbjct: 712 TAVSRAKEELLLLGSKDLYIQKIQSRNADLKHYTNLKSLIEK 753 >UniRef50_C8X8R3 Exodeoxyribonuclease V n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8R3_NAKMY Length = 653 Score = 320 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 141/550 (25%), Positives = 224/550 (40%), Gaps = 101/550 (18%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMI 101 L+ A +GH P + + + IG ++ + RGDE Sbjct: 143 LARHARDGHTISPAGLVADGIRPFGIDPE--PAIGAALLTDDVVSVPAPDGRGDER---- 196 Query: 102 LCGDRLYLNR--MWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAA 159 +L R + E T+A + LA V+D + Q A A Sbjct: 197 ------WLARAPLAGAEATIAEGLARLTRTART----LAGERAVKRAVTDLDDVQAGAVA 246 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 +A +S+++GGPGTGK+ TV A++++ I LAAPTG+AA RL E G A Sbjct: 247 LAAKHGVSLLTGGPGTGKSRTV----EAIVKLCTEVEASIALAAPTGRAAKRLEELAGSA 302 Query: 220 LRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-----LRHHAGNPLHLDVLVVDEASMI 274 A+T+HRLL A+P + AGNP+ ++VVDE SM+ Sbjct: 303 -----------------ATTVHRLLDARPPDKGSTSYVFDRDAGNPIEAKMIVVDETSML 345 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG 334 D+ + + LI A+ D A ++ +GD QL S+ G VLGD+ Sbjct: 346 DVELGAALISAIADGAHLVIVGDPAQLPSIGPGRVLGDLIDSG----------------- 388 Query: 335 THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE 394 + L K YR I +LA A+ G+ AV + Sbjct: 389 --------------ALPVTELTKLYRQDEGGTIARLAIAVRAGELPAVADPTHEVVIVPA 434 Query: 395 KRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGL 454 + ++ + ++ +++ P + ++ Q++ + GP G L Sbjct: 435 RGSEEAAHRVVQVVTDSI---------------PRVFDCERDQIQVVTPVHRGPAGTQAL 479 Query: 455 NERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND---SALGLFNGDIGIALDRGQGT-RV 510 N ++ + R + G V+ N G NG++G L G T RV Sbjct: 480 NRALKAALNPGTGTVRG----FDPGDRVVATANHLDAEPTGYANGEVGTVLTCGDNTIRV 535 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 F G + L + WA+TVH++QGSE++ +LP + +++R LVYTA+ Sbjct: 536 SFT---GGEAEISGKALGDLLHGWAITVHRAQGSEWEAVVAVLPPEAGNMLSRPLVYTAL 592 Query: 571 TRARRRLSLY 580 TRARR LS+ Sbjct: 593 TRARRHLSVV 602 >UniRef50_B5IMW7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMW7_9CHRO Length = 548 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 150/515 (29%), Positives = 221/515 (42%), Gaps = 53/515 (10%) Query: 85 LLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKL 144 L AS S +P++L GDRL R + V L Q + Sbjct: 66 LAASPLCS--GPWSPLVLDGDRLLWRRWHQQRQGVLESLGRRAGPAAAHPCSLEQARQQA 123 Query: 145 FPVSDEIN-WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 + ++ Q+ A A L + ++ GGPGTGKT+TV ++LAAL A R++LAA Sbjct: 124 AGHGEGLDAEQRRAVAAVLHYGLVLLEGGPGTGKTSTVTRMLAALR--AHAPGARMQLAA 181 Query: 204 PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHL 263 PTGK A R + STLHRLL +Q +R H +PL L Sbjct: 182 PTGK----------AAARLRAAIAGAGSGLALPCSTLHRLLESQ--GERFARHRHHPLEL 229 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 D+LV+DE SM+DL +M ++DALP R++ +GD QL V GAVL ++ + G Sbjct: 230 DLLVIDEVSMVDLALMGAVLDALPARCRLVLVGDAAQLPPVRPGAVLVELQSPRWRGALG 289 Query: 324 ERARQLS---RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 +L R G S+R G S + QL A N G + Sbjct: 290 GAVVELRTTYRNNGAIAQVAGQLRRQGAEPGELGAATSWR-GLRSTLEQLPANANLGWRP 348 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 A + + ++ + LE R+ ++Q + + Sbjct: 349 ASPRRLPPELLERLRQHQLQLQRLALSLEPG------------DRSAARALLQELDTLLV 396 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L +R G +GV ++ + P W G PV+ RN LGL NGD+GI Sbjct: 397 LSPVRRGRWGVEAVHRAL------LGDTVEQPIQAWPIGTPVLCQRNLGDLGLANGDVGI 450 Query: 501 AL-----------DRGQGTRVWFA-MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 + G+G RV FA DG + + P++LP+ + A+TVHK+QGSE Sbjct: 451 LVGAAAAAGAGRSPGGEGRRVLFAPGGDGELLWLHPAQLPDPQPALALTVHKAQGSEALE 510 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 +++P P T L+YTA+TRAR++ L Sbjct: 511 VWVLMPDSSRP--TDRLLYTALTRARQQAQLITPP 543 >UniRef50_Q6F1E4 Exodeoxyribonuclease V n=1 Tax=Mesoplasma florum RepID=Q6F1E4_MESFL Length = 743 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 135/627 (21%), Positives = 247/627 (39%), Gaps = 108/627 (17%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPL 67 E ++L + V F L + E A G L + Sbjct: 196 KEIASFEELDKVAVHFGLELHSPERIAYWAWKLADDFLFASGDTYTNKDYLSRSLMRKLK 255 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 + ++ L + + E + L +R+Y W E+ +A ++N Sbjct: 256 I-------------QDTELLFEGILYAKEKGILKLTKNRIYTEESWREEQIIADNIIKLN 302 Query: 128 HA-------------IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 +++E + + K F ++ Q+ A + ++S+I+GGPG Sbjct: 303 IPTKNANKEGISWEINQIEEEIAYENKIKDFKFDEK---QREALELFANNKLSIITGGPG 359 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 TGKTT + ++ +M+ E I A PTG+AAAR+ E+ K+ Sbjct: 360 TGKTTLIKGIVKLFNRMSGTEDYAI--ATPTGRAAARIRETYKKSY-------------- 403 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 A+T+H+LL A+ + + NPL+ ++++DE SMID + + I + +V+ Sbjct: 404 --ATTIHKLLEAK-ELNKFQITQNNPLNQKLVILDECSMIDNKLFASFIQSCDRVRKVVL 460 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD +QL SV G D+ Sbjct: 461 VGDANQLPSVGYGNTFADLLELDFLK-------------------------------TIK 489 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L +R + +GI LA + +T+ D + + + + + Sbjct: 490 LDTVHRQKNGNGIVDLAYKVLN------ETLEISDLESMSNVEINFDYNNQNTMNKVTEI 543 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ----KRKIHR 470 G++ D L+ RA N Q++C + G G+ +N +I+ + K+K++ Sbjct: 544 VGQHWDDLEKRA---------NHLQVICPMYGGELGIDEINAQIQNEFNENVKDKKKVYD 594 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG-----TRVWFAMPDGNIKSVQPS 525 R+ +M +ND+ L L NGD+G + V D I +QP Sbjct: 595 RGDYRFVVEDKIMFLKNDTDLDLANGDVGKIIKINYDAIGRLKDVLTEFNDKEIL-LQPK 653 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALIL--PSQRTPVVTRELVYTAVTRARRRLSLYADE 583 + + ++A +VHK+QGSE+++ L++ P + + + L+YTAVTRA+ ++ + D Sbjct: 654 NFSDVKLSYATSVHKTQGSEYNNVLLVIDSPKFNSGFINKTLIYTAVTRAKDKIVILGDS 713 Query: 584 RILSAAIA-TRTERRSGLAA-LFSSRE 608 + AI T R + L + RE Sbjct: 714 DLFFNAIKITPPRRNTTLIETMLEKRE 740 >UniRef50_Q97JX9 Exodeoxyribonuclease V, Alpha subunit, RecD n=1 Tax=Clostridium acetobutylicum RepID=Q97JX9_CLOAB Length = 726 Score = 318 bits (815), Expect = 4e-85, Method: Composition-based stats. Identities = 119/522 (22%), Positives = 196/522 (37%), Gaps = 93/522 (17%) Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI------NWQKVAAA 159 RL W E+ ++ E I + L + L P + I + QK Sbjct: 274 RLAKRTTWETEKDISVRLKE---KINNSQKLFTNNVIHLIPEIERILRIKYDDKQKELFY 330 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 I V++G GTGK++ +L L+ + D + +L +PT KAA R+ E GK Sbjct: 331 KINENNILVLTGFAGTGKSS----VLNGLLNLFDKKNITYKLMSPTAKAAKRMEECTGK- 385 Query: 220 LRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 AST+HR LG G + + NP DV+++DE SM+D+ + Sbjct: 386 ----------------KASTIHRALGLAEG--KFLVNEKNPFAEDVIIIDETSMVDIYLF 427 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 ++ + + +++ LGD QL S+ AG VL D+ Sbjct: 428 LAVLKGIKNTTKLLCLGDYGQLESISAGNVLFDMIQGGIPC------------------- 468 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 L+K +R DS + + I GD + K L+ Sbjct: 469 -------------VKLEKIFRQKEDSSLLNVITNIRNGDNP---------LKNTHKTYLE 506 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 G D L + R L + + + + +LC +++G GV LN+ ++ Sbjct: 507 LGRDCKFWLGKKEQTLSRVLLCYKECLK----HFSREDIMVLCPMKKGNSGVNKLNQELQ 562 Query: 460 QFMQ-QKRKIHRHPHSRWYEGRPVMIARNDSA-------------LGLFNGDIGIALDRG 505 + Q + + + + VM +ND G+FNGD G Sbjct: 563 KIANSQNTEELKLKDCAYKKEDLVMHIKNDYNANIFSEDCKDTIAKGIFNGDAGKIEKID 622 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 + + D I S L E ++A+T+HK QGS+ + L ++ R L Sbjct: 623 LENQKLYVSYDSGIVEYDNSNLNELMLSYALTIHKVQGSQSKVVIVALDMSHYKMLKRSL 682 Query: 566 VYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 +YTA +R L D + S A+ T + + L L Sbjct: 683 LYTAASRCVELLIFICDPKAFSIALNNNQVTHKNTFLGELLK 724 >UniRef50_Q7VBJ9 ATP-dependent exoDNAse alpha subunit n=1 Tax=Prochlorococcus marinus RepID=Q7VBJ9_PROMA Length = 564 Score = 318 bits (814), Expect = 5e-85, Method: Composition-based stats. Identities = 143/574 (24%), Positives = 233/574 (40%), Gaps = 61/574 (10%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQ 89 D P + LL G + L + +E + G + LL S Sbjct: 27 DSSPHLEDLVKLLMESLSRGEIYLKIDEVEAQIN--------LKGSGWPNKHMKVLLDSG 78 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD 149 +++ +PM+L G+ L R + V + + + +TL + S Sbjct: 79 WINK--YNSPMVLQGNYLSWRRWSEEMQNVIDQLTYKSFQQRIKKDQNCETLTR-QGFSA 135 Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 Q A + ++SGGPGTGKT T+ +L + ++ +I L APTGKA Sbjct: 136 LNLEQLSAVEAISNHNLILLSGGPGTGKTHTIVNML--IKALSIHPNLKIGLGAPTGKAT 193 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 RL E++ ++ L + + K TLHR L A G + N L LD+LV+D Sbjct: 194 RRLEETIQQSSLNLD-EEYKIKLAKIPCLTLHRWLQAVEG--KFLKGKKNKLQLDILVID 250 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+DL +M +++ALP +++I +GD DQLA V GAV + + A L Sbjct: 251 EMSMVDLSLMQAVLNALPKESQLILVGDPDQLAPVGNGAVWHKLQEESTREIFKHCAIHL 310 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 S+L T R + L K R + G+ + ++ V Sbjct: 311 SKLYRT-------------RGEVASLAKVIR---NKGLSCFFMELKNIPSSSNVNVLSST 354 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLD-------LLQARAEPDLIIQAFNEYQLLC 442 I +++ +++ L YL + ++ E +LC Sbjct: 355 KEVIPIQIVNKIKEHQNKLRSHTKEARVYLRSNPTGNLHSYNQKLTSRVLDCLEELIVLC 414 Query: 443 ALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL 502 R G +G+ +++ I S W EG PV+ N S + L NGDIG+ + Sbjct: 415 PRRHGLWGIEHIHQTI------LGNQSDEGVSSWPEGTPVICGANQSEIHLANGDIGVVI 468 Query: 503 DRGQGTRVWFAMPDGN----IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS--- 555 Q ++ F + + + P+R+ E +A T+HK+QGSE +H + P Sbjct: 469 GEDQNKKLLFRVNSLEKGITTQLIHPARVKSLEPAFATTIHKAQGSEAEHVICLWPDPIN 528 Query: 556 ----QRTPVVT-----RELVYTAVTRARRRLSLY 580 ++ R L+YTA+TRAR +L L Sbjct: 529 TKESANNELIRNENYERRLIYTAITRARTKLDLV 562 >UniRef50_Q6N7J7 Possible Viral (Superfamily 1) RNA helicase n=1 Tax=Rhodopseudomonas palustris RepID=Q6N7J7_RHOPA Length = 1253 Score = 317 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 151/635 (23%), Positives = 251/635 (39%), Gaps = 90/635 (14%) Query: 14 KQLRPLDVQFALTVAGDEHPAVTLAAALLSHDA-GEGHVCLPLSRLENNEASHPLLATCV 72 +++ PL Q +T D+ L + +L H EGH LP S + + PL CV Sbjct: 480 REIAPLPAQARMTDGIDKRRVRALISDMLEHAVQNEGHTLLPRSWIVSRATGAPLDPRCV 539 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLN-RMWCNERT-----VARFFNEV 126 + + + L + +R + D L L R + RT V + Sbjct: 540 VDEDVIDMVADYLALTLETARTSD--------DELALKLRRYGASRTAITSAVHKRVGGK 591 Query: 127 NHAIE------VDEALLAQTLDKLFPVSDEINWQKV-AAAVALTRRISVISGGPGTGKTT 179 H+I VD L V + +K A R SV+ G G+GKTT Sbjct: 592 RHSIVHKWRALVDAVLPPMEAGPEAEVEELARREKSGALEQLACGRFSVLIGPAGSGKTT 651 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 LL L + + I L APTGKA RL E+ + L A Sbjct: 652 ----LLKVLCDLPEISSGGILLLAPTGKARVRLEEATKRLGEGQTL-----------AQF 696 Query: 240 LHRLLGAQPGSQRLRHHAGNPLH--LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 L R S R + P ++VDE SM+ +S LIDA+ R+I +GD Sbjct: 697 LQRYERYDGASGRYFRNPKAPREKGYRSVIVDECSMLTEDQLSALIDAIEGVDRLILVGD 756 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 QL + AG DIC +E Q ++ + LL + Sbjct: 757 PRQLPPIGAGRPFVDICRKLAP---SEETPQFPKVAPGYAELTIIGRQRGTDRGDVLLAR 813 Query: 358 SYRFGS-DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL---- 412 + D+G ++ A+ G + V+T +D+E RL +A+ + + Sbjct: 814 QFSGEPLDAGADEVWEALRSGTLSHVRTAHWALPSDLEPRLTDEIVRGLALADRSDQRGF 873 Query: 413 ------AGYGRYLDLLQARAEPDL--IIQAFNEYQLLCALREGPFGVAGLNERIEQFM-Q 463 + + ++ + RA+ +A +++Q+L +R G GV +N I++ Sbjct: 874 ELSIGGSEWEGHVLFWERRADQREGGAAEAAHDWQILSPVRAGAPGVEAINLAIQRRFRN 933 Query: 464 QKRKIHRHPHSRWYE---------GRPVMIARNDSALG---------LFNGDIGIALDRG 505 + R+ P++++ + G V+ RN+ + NGDIGI + Sbjct: 934 KVRERALTPNAKYPKPAGPQGILWGDKVINLRNNGRRRTYPRQEKPYVANGDIGIVVGGY 993 Query: 506 QGTRVWFAMPD---------GNIKSVQPSRL------PEHETTWAMTVHKSQGSEFDHAA 550 + ++ F D G + PE E +A+T+HK+QGS+F+ Sbjct: 994 KRGKMKFRPRDLEVEFASQPGVKFTYYAGEFSGEEGTPELELAYALTIHKTQGSQFERTF 1053 Query: 551 LILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 ++LP + ++REL+YTA+TR + L+L ++ I Sbjct: 1054 VVLP-RHCRPLSRELLYTALTRHQEELNLLHEDDI 1087 >UniRef50_A6P2H5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P2H5_9BACE Length = 512 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 128/511 (25%), Positives = 201/511 (39%), Gaps = 92/511 (18%) Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVAL 162 G R+YL + E A+F ++ E+ AL Q + ++ Q+ A + Sbjct: 64 EGRRIYLAKTLAYENAAAQFLADILSNNELQSAL--QDMPASTELTTLTGEQQSAIRMVF 121 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 R+S+I GG GTGKTT V L+A A L APTGKAA LTE G Sbjct: 122 GHRLSLILGGAGTGKTTLVRGLIA----QAPHRLSSCILCAPTGKAARNLTERTG----- 172 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDV---LVVDEASMIDLPMM 279 A T+H LG +P L P++ D+ +V+DEASM+ L M+ Sbjct: 173 ------------VQARTVHGALGLRPEENFLG-----PVYWDLTGLVVIDEASMMTLEML 215 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 + ++ + A V+ +GD +QL SV AG VL D+ A Sbjct: 216 AGILHKVSPFAHVVLIGDPNQLLSVGAGNVLTDLLA------------------------ 251 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK--TAVKTVFQQDFTDIEKRL 397 L L +R + + L + + + F F + + Sbjct: 252 --------LGVPCTQLTICHRQSAQA--AALGHNVRHFQECRSLADLRFDNSFYFVPQT- 300 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALR-EGPFGVAGLNE 456 D + + G + + + Q+L R G V+ LN+ Sbjct: 301 -----DEKRICQAVCCGGAKLYRMGGST-------------QVLSPFRSSGKLSVSSLND 342 Query: 457 RIEQFMQQKRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFA 513 + + +++ P + + EG VM+ ND + NGD+G Q + Sbjct: 343 ALRDMLNPAVPANQNPDWPDACFREGDRVMVLENDWQQMVCNGDVGHFYFLSQPGSFGIS 402 Query: 514 MPDGNIK-SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 P + + +A+TVHK+QGSE+D L L ++TR L+YTA++R Sbjct: 403 CPGQRRACWIGENPSDRLSLAYAITVHKAQGSEYDMVILPLVKSFGVMLTRNLLYTAISR 462 Query: 573 ARRRLSLYADERILSAAIAT-RTERRSGLAA 602 AR+ + L D L A+ R+S L A Sbjct: 463 ARKHVVLVGDPDALEEALRQEPKPRKSQLVA 493 >UniRef50_Q46K41 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Prochlorococcus marinus RepID=Q46K41_PROMT Length = 573 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 128/582 (21%), Positives = 243/582 (41%), Gaps = 67/582 (11%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCLPLSRLENN-EASHPLLATCVSEIGELQNWEECLLAS 88 + + A+ +L G V + + ++ N E + + + W + Sbjct: 29 ESNEALIDIVNVLMDGLSRGDVYIDMKKIPENLELKYKDWPSYHMKALLESGWTK----- 83 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS 148 + +P++L GD + R + N I L ++ Sbjct: 84 ------GDNSPIVLNGDLISWRRTHNEIVETIQKILLRNQPINHLSKELPVRIEA--KNL 135 Query: 149 DEINWQKV-AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 + +N Q++ A + + +I ++SGGPGTGKT+T+ ++L L + I +AAPTGK Sbjct: 136 EHLNIQQIDAVNLVKSEQIILLSGGPGTGKTSTILQML--LEALTRNPTLSIAMAAPTGK 193 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 AA +L +++ + + K + TLH+ L A P R ++ L LD++V Sbjct: 194 AAKKLKDTIQAGIEDFD-DPIKDKLSNIPSKTLHKWLEAGPNG--FRRNSQRLLKLDLIV 250 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DE SM+DL ++ L+DAL ++I +GD DQL + +G + + Sbjct: 251 IDEMSMVDLSTINGLLDALTKSCQIILVGDPDQLLPIGSGGIWQILQEKETK-------- 302 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 T + T++ + + LL+ D G+ +++ + + + Sbjct: 303 -----TNFQSNSVKLTKSYRNKGDIALLRNIL---KDKGVDAFWQLLSKKEDSTNTLHYL 354 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD---------LLQARAEPDLIIQAFNEY 438 I ++++ Y L+E Y+ + E + + + Sbjct: 355 SSIKSIPDPVVRTLVSYRKKLKELTENCINYIPDEAWQSSMIEVDQSVEIQKLFKFIDNL 414 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 +LC R GP+GV ++E + K +W E P+M N +GL NGD+ Sbjct: 415 LILCPQRYGPWGVKKIHEFL------LGKRFEKEVHKWGEATPIMAKSNQPEIGLANGDV 468 Query: 499 GIALDRGQGTRVWFAMPDGN----IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 G+ + G+ R F + + + PSRL ++ +AMT+HK+QGSE D L+ P Sbjct: 469 GVIIGNGEKRRFLFNVFSEEQRLVTRLINPSRLNRYDAAYAMTIHKAQGSEADQVLLLWP 528 Query: 555 SQ------------RTPVVTRELVYTAVTRARRRLSLYADER 584 + + + ++YTA+TRA+++L + ++ Sbjct: 529 TTSKVSEEKTSNKFYSDDYEKRMLYTAITRAKKQLMVITNKE 570 >UniRef50_C3CUT3 Helicase, RecD/TraA n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CUT3_BACTU Length = 871 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 116/576 (20%), Positives = 197/576 (34%), Gaps = 135/576 (23%) Query: 100 MILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL-LAQTLDKLFPVS--DEINWQKV 156 +++ DR+YL + E VA ++ E + + LDK + Q+ Sbjct: 358 IVIEQDRVYLEYIHSAEVRVAEELYRLSDTQEWKNQIDIKAELDKYLSAEGIELEEKQEE 417 Query: 157 AAAVALTRR--ISVISGGPGTGKTTTVAKLLAALIQMADGERCR--IRLAAPTGKAAARL 212 A RR V++G G GKT + +L + ++L APTGKAA Sbjct: 418 AILTFTKRRGGFYVLNGSAGCGKTFVLKIILKIFNIVCKSNGITPYLQLLAPTGKAAKVA 477 Query: 213 TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 +S E T+HR L + G + +A NPL +++V+DE+S Sbjct: 478 KKSTN-----------------EICLTVHRGLEFR-GGEGFTFNASNPLPGNIIVLDESS 519 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 +D+ + L+ A+ A VI++GD QL S+ G+VL DI Sbjct: 520 FLDVELSKDLLQAIKRGATVIWMGDIKQLPSIGPGSVLKDIIESGVLP------------ 567 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 + L R G SGI + A I G+ +D D Sbjct: 568 -------------------VVTLDVVKRQGKQSGIAKNAKKIIDGEMIETC----EDTKD 604 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 S + + + E++ + D ++ Q+L + G G Sbjct: 605 SYAVFRDSPKVILKNILESVKRVLTFPDY------------TLDDIQVLSPQKTGILGTY 652 Query: 453 GLNERIEQFMQQKRKIHRHPHSRW-----------YEGRPVMIARN-------------- 487 +N +++ + + + EG V+ RN Sbjct: 653 MINLLMQEAFNETESTVTSLNKEFTVDNERFSLYFKEGDKVINMRNNDLKVWYKKSYVST 712 Query: 488 --------------DSALGLFNGDIGIA---------------------LDRGQGTRVWF 512 D+ G+ NG+ G+ + R+ Sbjct: 713 EDSNVLLTQYTPNKDAKGGIANGETGVIEAIRKIKEPVDNKETIKGAVPAKTKEIIRIIV 772 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 DG I + + +A ++HKSQGS++ + + ++ L YT TR Sbjct: 773 KYDDGYI-FYDNKEKEDLDHAYAFSIHKSQGSQWRACIMPISMLHYRMLDNSLFYTGFTR 831 Query: 573 ARRRLSLYADERILSAAIATRT--ERRSGLAALFSS 606 A+ + +ER + AI T ER + L S Sbjct: 832 AQEFNVVIGEERAIKHAIKTYKSRERNTTLKERLES 867 >UniRef50_A4JFN0 AAA ATPase n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JFN0_BURVG Length = 858 Score = 315 bits (808), Expect = 3e-84, Method: Composition-based stats. Identities = 129/549 (23%), Positives = 202/549 (36%), Gaps = 102/549 (18%) Query: 92 SRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL---DKLFPVS 148 + ++ PM+ D + E A + AL + + Sbjct: 243 ATDEQGRPMVFSAD------FFDAEEQCAHILLRMAKDQSPYHALDRKQALADAQEITGL 296 Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208 + Q+ A V R+++ISG PG GKTT LL + + + + + AAPTGKA Sbjct: 297 KLLEQQQQAVEVLFEGRVAIISGKPGAGKTT----LLKCVAPILEKDGRAVHYAAPTGKA 352 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH-LDVLV 267 A R+ +S+ + ST+HR+LG G + R NPL +V Sbjct: 353 AKRMRQSIERPT-----------------STIHRMLGLGRGGAKARPDDENPLKTASAVV 395 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DEASM+D + ++ ++ ++ +GD QL S+ AG VL D+ Sbjct: 396 IDEASMLDAKLTLAILRSIGPKTLLVLVGDPGQLPSIRAGKVLADLMD------------ 443 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 S L R G+ S I ++A AI+ G+ Sbjct: 444 -------------------SNAFPTARLTNVVRQGAQSDIVKVARAIDSGESP------- 477 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE 446 DFT + + LEE A G + + A+ D + + Q++ A Sbjct: 478 -DFTLHPDSPPERKKSDCVFLEEPNAQRLGDRIANMLRNAQVDAKMDPLRDAQVIAASNV 536 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSR-----------WYEGRPVMIARND------- 488 GP G LN ++ H + G VM N+ Sbjct: 537 GPTGAVALNATLQAAFNPPEPNKPELHVKRTVKGVDQSFALRFGDKVMQTSNEASKALFD 596 Query: 489 ---------SALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 G+FNGD+G + + +W +G+ ++A TVH Sbjct: 597 GPSDRSKPLEEKGIFNGDVGYIVAMDR-VSMWVQFDNGHAHFSNDEARKSLTLSYANTVH 655 Query: 540 KSQGSEFDHAALILP-SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TER 596 K QGSE + S P++TR L YTA+TRAR + + ER L+ A R Sbjct: 656 KFQGSESPLIFFAMHESTPKPLLTRNLAYTAITRARTKCIVIGSERRLNEAAGRDALATR 715 Query: 597 RSGLAALFS 605 + L L S Sbjct: 716 HTRLKGLLS 724 >UniRef50_D1J8K8 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8K8_MYCHP Length = 747 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 101/519 (19%), Positives = 187/519 (36%), Gaps = 94/519 (18%) Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVAL 162 G L ++ E+ + + + E+ P Q A AL Sbjct: 301 DGTYLSAKDVFDMEKYIVKRLKHI-------ESSSNPKFINFMPSEMFHPLQLQAIETAL 353 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ 222 T ++++I+G PGTGKT +++ L+ + D + I PTG+A + K Sbjct: 354 TSKLTLITGNPGTGKTLITNEIIKQLLSVYDEDDLAI--VTPTGRATININNIQEKT--- 408 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 +A T+H L + + + N ++ L++DE SM+ + + L Sbjct: 409 -------------NAVTIHSFLEWDVDNDKFMINEKNAKPIECLIIDEFSMVSVDLFYSL 455 Query: 283 IDALPDHA--RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAG 340 + + ++ R+I +GD+DQL ++ AG ++ D Sbjct: 456 LKGIKKNSLKRIILVGDKDQLPAIGAGYLIRDFIESNIF--------------------- 494 Query: 341 TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS 400 +L K +R + I Q A IN+G K Q IE + Sbjct: 495 ----------QTIVLSKIFRQAENFDIIQDALDINKGKLPEFKGNNSQ---FIETKQSDL 541 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 + L DLLQ + +L + G+ +NE + Sbjct: 542 KSMLLFKLN----------DLLQQGYSKR-------DIAILSPIYNYETGIDQINETLNN 584 Query: 461 FMQQ--KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR--------- 509 F ++ + ++ V+ ND +FNG+IG G + Sbjct: 585 FFRKLDGNEQIKYRDHVLAIDDKVINLVNDPKTKVFNGEIGYISHFGFENKKNSFEKVLA 644 Query: 510 ---VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 V F + + + +VHK QGSE ++L S+ +++++L+ Sbjct: 645 SISVEFENDSKTVSYSRKDFFANTYPAYCTSVHKYQGSECKCVIVVLFSEAKKLLSKKLI 704 Query: 567 YTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAAL 603 YTA+TRA++ + ++ L I + R + + L Sbjct: 705 YTAITRAKKYCVVIGEKEALITGINNDDDSNRITNIKYL 743 >UniRef50_UPI0001C31D3E helicase, RecD/TraA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D3E Length = 741 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 138/609 (22%), Positives = 220/609 (36%), Gaps = 112/609 (18%) Query: 28 AGDEHPAVTLAAALLSHDAGEG----HVCLPLSRLENNEASHPLLATCVSEIGELQNWEE 83 A E PA T AA L H GEG C P + L ++ + Sbjct: 212 APLESPARTRAAIL--HALGEGERDGSTCQPAAALLLRTREL-----LSAQAPPPAAFLA 264 Query: 84 CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDE-ALLAQTLD 142 L V + + +Y ER +A + D+ + + D Sbjct: 265 ELEEGGDVETEQDDEAVW-----VYRAETARLERELAERVTALLDGDGSDKLSDPVEPPD 319 Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 + Q A R+SV++GGPGTGKT + + Q+A +R R L Sbjct: 320 AGADGVELTAEQWAGVRGAFVHRLSVVTGGPGTGKT----ASIRMIGQIARDQRARTMLV 375 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLH 262 APTG+AA R+TE+ G DAST+H LG PG + H PL Sbjct: 376 APTGRAALRMTEATG-----------------LDASTVHSALGWIPG-EGPVHDEDTPLR 417 Query: 263 LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT 322 D+++VDE SM +L ++ L+ A+ V+ +GD DQLA V AG ++ A Sbjct: 418 CDLVIVDETSMANLELLVTLLRAIGPGTHVVLVGDADQLAPVGAGKPFAELVASG----- 472 Query: 323 AERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAV 382 R LQ +R + S I Q A AI G+ + Sbjct: 473 --------------------------RVPTARLQHIFRQAAGSMIVQGAHAIRVGNPPSF 506 Query: 383 KTV--FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 + D I + + +A + L+ R + + Q+ Sbjct: 507 VRAEEMRHDLFFIARP-------------DPVAAREEIVSLVSERLPQHYGVDPNADIQV 553 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM-IARNDSALGLFNGDIG 499 + G G+ LN + + + + R G +M + RN LG+ NG + Sbjct: 554 FAPIYRGELGIDALNRSLRAALNPAGR--EIGNGRLRVGDKLMLVGRNLHELGVMNGTLL 611 Query: 500 IALDRGQGTRVWFAMPDGN-------------------IKSVQPSRLPEHETTWAMTVHK 540 LD G D + + + + + + +A +VH+ Sbjct: 612 RLLDEVGGGSS--EDEDARDARGAREAGGVLVGVDGGAVVQIPATEVGQLQLAYACSVHR 669 Query: 541 SQGSEFDHAALIL-PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERR 597 QG E A ++ P+ + RE++YTA+TR+ + +++ A T R Sbjct: 670 GQGIELPIAIVVAHPAAGGRFLRREMLYTAITRSTVATVIVGTPDMVARAARTTDAGRRH 729 Query: 598 SGLAALFSS 606 S LA + Sbjct: 730 SRLAQRLDA 738 >UniRef50_Q6KIJ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Mycoplasma mobile RepID=Q6KIJ7_MYCMO Length = 734 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 100/497 (20%), Positives = 201/497 (40%), Gaps = 77/497 (15%) Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 +F E ++E + L+K+ + QK A +L ++ISG PG+GK+ Sbjct: 298 KFIFEYISSLEKKISQHTFNLEKIINSKTLDSIQKEAIIYSLNNSFNIISGIPGSGKSAI 357 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 + ++ ++ E I + PTGKA L ++ ++A T+ Sbjct: 358 IKRIYKKAKEIYKDE--EIHVLTPTGKATIILKQN------------------NQEAKTI 397 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 H L + + N H+ V+++DE SM+D + S L+ +P+ ++I +GD +Q Sbjct: 398 HSFLKWNKDNNQFDFKTINYDHVKVIIIDEFSMVDTYVFSTLLKVVPNLEKLILVGDYNQ 457 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L S++ G +L D+ + L+ +YR Sbjct: 458 LPSIKGGQILKDLIESNLFK-------------------------------VFFLKTNYR 486 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 I + A +N + T ++ +E S E+Y L YLD Sbjct: 487 QKDKFDIMKNALMVND---DLIPTFNSENTLFLEA----SSENYFNKLT-------TYLD 532 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-----KRKIHRHPHSR 475 L + + N +L EG G+ +N+ ++ + Q+ + ++ P+ + Sbjct: 533 LFIEKHHNYTFFETMNLINILSVKYEGYGGINEINQSLQNYFQRHYFKDNQPFYKTPNLK 592 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIA----LDRGQGTRVWFAMPDGNIKSVQPSR-LPEH 530 + V+ ND ++NG++G L + + I + + L Sbjct: 593 LFINDKVIQIENDPENDVYNGELGFINNVKLKENKEIDLISVDFGNKIITYNLNNFLQSV 652 Query: 531 ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 + +A++VHK QGS + ++ + +++++L+YTA +RA+ L + + S ++ Sbjct: 653 KLAYAISVHKFQGSASEILIFLIFKNQKKLLSKKLIYTAFSRAKSFLIVIGEHEAFSISV 712 Query: 591 A--TRTERRSGLAALFS 605 A +R++ L L + Sbjct: 713 AKENNLDRKTYLRYLLN 729 >UniRef50_C5B4H6 Putative Helicase, RecD/TraA family n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4H6_METEA Length = 864 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 140/616 (22%), Positives = 227/616 (36%), Gaps = 107/616 (17%) Query: 28 AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLA 87 AGD+ + A+L GEG LP + + E + LL +++NW Sbjct: 213 AGDDRRIESAVLAVLDRARGEGSTGLPAA--KAAEEAAALLGRDGGMRAQVENWL----- 265 Query: 88 SQAVSRGDEPTPMILC----GDRLYLNRMWCNERTVARFFNEVNHAIEV-DEALLAQTLD 142 + G P+ + G ++L + E VAR ++ A V A + ++ Sbjct: 266 --LAAAGRRDGPVRVDRSPKGFVVHLPELLVAEAYVARRIMDMLRAPPVHTPARVDAAME 323 Query: 143 KLFPVSDEINW----QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 ++F + + Q+ A A ++ +++GGPGTGKTT L+A L ++ + Sbjct: 324 RVFAANPKFARFDAVQREAVRSAALSQVFILTGGPGTGKTTVTEALIAVLEELGHRQ--- 380 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR----LR 254 I L APTGKAA R + + + A TLHR L A+ + Sbjct: 381 IDLVAPTGKAAKRASAATKR-----------------KALTLHRRLLAREDKKTGGSMFG 423 Query: 255 HHAGNPLHL-DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + NPL VL+VDE SMID M+ ++DALP R++ +GD QL SV AG VL D+ Sbjct: 424 VNRENPLPAGTVLLVDETSMIDAQTMAAVVDALPPDGRLVLIGDPHQLPSVGAGNVLADL 483 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 + + L YR S I + + Sbjct: 484 LS--------------------------ARTGSRPLVPSVGLVNIYRQEETSSIARESRT 517 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 + G + + E E+ + ++ + L + Sbjct: 518 VKDGKVPFMDNKVRGGLAFYEHDASDIAEEIVRLVTGPMRA--------------QLGLD 563 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY---------EGRPVMI 484 + ++ GP G LN R+ + + G VM Sbjct: 564 PARDVAVMSPQAPGPAGTWELNARLSAALNPGGRAIEGVFHGPRDDPKMPLPRVGDRVMA 623 Query: 485 ARNDSALGLFNGDIGIALD------RGQGTRVWFAMPDG-------NIKSVQPSRLPEHE 531 +ND +FNGD+G G+ RV D + +R E Sbjct: 624 TKNDEENDVFNGDVGTVAGVEDRNADGRQKRVIKVAFDPDAPGARPRLVEYPVTRWRELI 683 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +A T+HK QGS+ A ++ S ++ R ++YT TR L + + L A++ Sbjct: 684 LAYACTIHKMQGSQATAAVIVASSAHAGMLDRTILYTGWTRPEELLFVVGERSALEDAVS 743 Query: 592 TRTE--RRSGLAALFS 605 R R + LA Sbjct: 744 RRASDLRWTRLAEFVE 759 >UniRef50_A4AB31 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AB31_9GAMM Length = 1227 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 140/640 (21%), Positives = 240/640 (37%), Gaps = 79/640 (12%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQ 89 D L LS EGH LP+ + S PL C + L E Sbjct: 460 DPRRVRPLCILTLSEAIEEGHTLLPVDWVIQRIRSRPLKPECKIDHDLLAVVIESFTGFI 519 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVD-EALLAQTL------D 142 + P + + Y + RTV + A + D ++L+A + D Sbjct: 520 DAVQLKNGAPALQLAE--YASTKQLIARTVEKRLKRKRTAGDFDWDSLVADAIGEGVPSD 577 Query: 143 KLFPVSDEINWQKVAAAV--ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR 200 + S+ Q+ AAA+ ISV++G GTGK+T LL AL ++ E + Sbjct: 578 PVLAASENKARQEKAAALEEIYQSGISVLTGSAGTGKST----LLKALCRIPGVEESGLL 633 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 L APTGKA RL ++ G + + K D T L + R R Sbjct: 634 LLAPTGKARVRLEQATGMFKQGQTIAQFLLKYGRYDGETGRYLWVSAADPCRDRK----- 688 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA- 319 ++VDE SM+ ++ L+ + + R+I +GD QL + AG DI Sbjct: 689 ----TVIVDECSMLTEDQLAALLSGIKNVERLILVGDPQQLPPIGAGRPFVDIVERLRPD 744 Query: 320 GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK 379 G + R + +P ++ R+ L D ++ I+ G Sbjct: 745 GESNYFPRVDAGYASLSIPRRQLSDGDKPREDLLFADYFSGGPLDPAADEVWTRISSGSI 804 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAM-LEEALAGYGRYLDLLQARAEPDLII------ 432 +K V D++ +L+ D + + EE AG+ + ++ +PD + Sbjct: 805 DGLKVVSWSTPDDLQAKLVGQLVDELGLDSEEDEAGFEVSIGGVRWDKDPDRVFFNNRWK 864 Query: 433 ------QAFNEYQLLCALREGPFGVAGLNERIEQFMQQK----------RKIHRHPHSRW 476 ++ ++Q+L LR GV +N ++ +++ + R Sbjct: 865 DRRGAAESAEDWQILSPLRASEVGVEAINRLLQSRFRERAQHMAAQRWPKIPKPMGPQRI 924 Query: 477 YEGRPVMIARNDSALG---------LFNGDIGIALDRGQGTR-----VWFAMPDGNIKSV 522 G V+ RN S + NGDIG+ + + Q + + + Sbjct: 925 LWGDKVINVRNSSKRKVWPDIDSPYVANGDIGVVVGKYQKGKGVPKHLEVELTAQTGPQY 984 Query: 523 Q---------------PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 P E +A+TVHK+QGSEF LI+P+ +++RE++Y Sbjct: 985 SAGSPQYKYFASEFSGEDANPPLELAYALTVHKTQGSEFGTTFLIIPN-PCRLLSREMLY 1043 Query: 568 TAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSR 607 TA+TR + R+ ++ L + S +A ++ Sbjct: 1044 TALTRHKDRVVVFHQGD-LRDIARFSSPDYSEIARRLTNI 1082 >UniRef50_Q3AX67 DNA helicase/exodeoxyribonuclease V, alpha subunit n=5 Tax=Synechococcus RepID=Q3AX67_SYNS9 Length = 530 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 162/572 (28%), Positives = 240/572 (41%), Gaps = 99/572 (17%) Query: 33 PAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVS 92 P + + L +G++ +PLS P V + G L+ Sbjct: 29 PELEQLSLALIEALEQGNLTVPLS---------PEREELVRQSGWLE------------- 66 Query: 93 RGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN---HAIEVDEALLAQTLD---KLFP 146 E +P++L G RL R V E + D + + P Sbjct: 67 --GEASPLVLQGQRLGWRRWMQAMDDVVEALVERATPSDPLPTDPSPTDPRSTDPGAIDP 124 Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 S Q+ A + +ISGGPGTGKT+TV +LLA + R+ LAAPTG Sbjct: 125 PSSLNREQRDAVLALDQASVVLISGGPGTGKTSTVVELLARV--QLHHPDLRMGLAAPTG 182 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVL 266 KAA RL +++ L+ LP TLHR L A G+ HA PL LD+L Sbjct: 183 KAARRLGDAVRPRLKGLP------------CGTLHRWLEA--GAHGFARHAERPLKLDLL 228 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 V+DE SM+DL +M L+ ALP R++ +GD QL V +GAV Sbjct: 229 VIDEMSMLDLALMQALLSALPPCCRLVLVGDPAQLPPVGSGAVWH--------------- 273 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 RL + V GT A L+++YR + + QLA+A+ G A + Sbjct: 274 ----RLQQSDVRERFGTGA-------IHLKQTYR--NRGAVAQLASALREGGIDAFQGGL 320 Query: 387 QQ-DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA----------EPDLIIQAF 435 + D + +S M+ G+ R L L + + ++ A Sbjct: 321 AELDAEANVRIHRESSRRLPPMIRRHWQGHHRRLLQLSEGLLDCSEAELSGQAEPLLAAL 380 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 + +LC R GP+ + ++ + ++ RW G PV+ N LGL N Sbjct: 381 EQNLVLCPRRRGPWSLEDVHRSL------LGEVIAADPRRWPSGLPVICGGNQPELGLAN 434 Query: 496 GDIGIALDRGQGTRVWF--AMPDG--NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 GD+GI + G +R+ F A DG +K + P+RL E A+T+H++QGSE D + Sbjct: 435 GDLGITVGAGDQSRLLFRVATDDGGVEVKRLHPARLRRLEPAVALTIHRAQGSEADAVFV 494 Query: 552 ILP----SQRTPVVTRELVYTAVTRARRRLSL 579 + P S L+YTA+TRAR L L Sbjct: 495 LWPQPLDSPDGSDHDCRLLYTAITRARVSLDL 526 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P04993 Exodeoxyribonuclease V alpha chain n=123 Tax=Ent... 684 0.0 UniRef50_C4K847 Exonuclease V (RecBCD complex), alpha chain n=18... 525 e-147 UniRef50_A7FFE8 Exodeoxyribonuclease V, alpha subunit n=30 Tax=E... 523 e-147 UniRef50_Q2LTC7 Exodeoxyribonuclease V alpha chain n=1 Tax=Syntr... 518 e-145 UniRef50_B9M4M2 Exodeoxyribonuclease V, alpha subunit n=8 Tax=De... 505 e-141 UniRef50_D0ICR8 Exodeoxyribonuclease V alpha chain n=1 Tax=Grimo... 497 e-139 UniRef50_C4L7B4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=To... 490 e-137 UniRef50_Q6MDD6 Putative exodeoxyribonuclease V n=1 Tax=Candidat... 486 e-135 UniRef50_B5EPU7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Ac... 479 e-134 UniRef50_Q2BKD7 Exodeoxyribonuclease V alpha chain n=1 Tax=Neptu... 479 e-133 UniRef50_B8FB95 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 476 e-132 UniRef50_D1R7Z3 Putative uncharacterized protein n=1 Tax=Parachl... 475 e-132 UniRef50_A6W0A8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ma... 471 e-131 UniRef50_A1S6V1 Exodeoxyribonuclease V n=1 Tax=Shewanella amazon... 471 e-131 UniRef50_Q5QUQ9 ATP-dependent exoDNAse (Exonuclease V), alpha su... 469 e-130 UniRef50_A8ZX10 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 468 e-130 UniRef50_A8ZLV4 Helicase, RecD/TraA family n=18 Tax=Cyanobacteri... 468 e-130 UniRef50_Q1QYD2 DNA helicase/exodeoxyribonuclease V, alpha subun... 466 e-129 UniRef50_C0QI06 RecD2 n=2 Tax=Desulfobacterium autotrophicum HRM... 465 e-129 UniRef50_A0KQ57 Exodeoxyribonuclease V, alpha subunit n=10 Tax=G... 464 e-129 UniRef50_C7RK95 Helicase, RecD/TraA family n=1 Tax=Candidatus Ac... 464 e-129 UniRef50_A4B916 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Re... 461 e-128 UniRef50_Q2SQD7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ha... 458 e-127 UniRef50_C0N790 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Me... 458 e-127 UniRef50_A4VRQ4 Exodeoxyribonuclease V alpha chain n=2 Tax=Prote... 456 e-127 UniRef50_Q3B2W0 Helicase RecD/TraA n=19 Tax=Bacteria RepID=Q3B2W... 456 e-126 UniRef50_Q1LST7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ba... 451 e-125 UniRef50_A3YGD9 Exodeoxyribonuclease V alpha chain n=1 Tax=Marin... 450 e-125 UniRef50_A1TWJ9 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Ma... 448 e-124 UniRef50_Q0VNI0 Exodeoxyribonuclease V alpha chain n=1 Tax=Alcan... 447 e-124 UniRef50_Q1NL94 Exodeoxyribonuclease V, alpha subunit n=3 Tax=De... 447 e-124 UniRef50_D1A5Y8 Helicase, RecD/TraA family n=15 Tax=Bacteria Rep... 446 e-124 UniRef50_B7KWK3 Helicase, RecD/TraA family n=16 Tax=Bacteria Rep... 446 e-123 UniRef50_B3ECZ3 Exodeoxyribonuclease V, alpha subunit n=7 Tax=Ch... 445 e-123 UniRef50_A8FUM3 Exodeoxyribonuclease V n=7 Tax=Shewanella RepID=... 444 e-123 UniRef50_A9L0I2 Exodeoxyribonuclease V, alpha subunit n=12 Tax=S... 443 e-122 UniRef50_Q3IJ15 Exonuclease V, alpha chain with recC and recD: 5... 442 e-122 UniRef50_A3MYX5 Exodeoxyribonuclease V alpha chain n=11 Tax=Past... 442 e-122 UniRef50_C1D6T5 Exonuclease V alpha subunit RecD n=1 Tax=Laribac... 441 e-122 UniRef50_Q1N2Q9 Exodeoxyribonuclease V alpha chain n=1 Tax=Berma... 440 e-122 UniRef50_D2B1Q1 Exodeoxyribonuclease V n=9 Tax=Actinomycetales R... 440 e-122 UniRef50_B5JRL2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=ga... 439 e-121 UniRef50_B0B9E0 Exodeoxyribonuclease V alpha chain n=15 Tax=Chla... 438 e-121 UniRef50_A1SUW2 DNA helicase/exodeoxyribonuclease V, alpha subun... 437 e-121 UniRef50_C1SHH8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 436 e-120 UniRef50_A6DHN1 ATP-dependent exoDNAse (Exonuclease V), alpha su... 436 e-120 UniRef50_A7K3N3 Exodeoxyribonuclease V alpha chain n=60 Tax=Gamm... 435 e-120 UniRef50_C5CL22 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Be... 434 e-120 UniRef50_B3EIT2 Helicase, RecD/TraA family n=13 Tax=Bacteria Rep... 434 e-120 UniRef50_Q7VRF0 Exonuclease V, alpha chain n=2 Tax=Candidatus Bl... 433 e-120 UniRef50_A3WKH6 ATP-dependent exoDNAse (Exonuclease V), alpha su... 433 e-119 UniRef50_Q02HF8 Exodeoxyribonuclease V alpha chain n=27 Tax=Bact... 432 e-119 UniRef50_B8J4Q4 Helicase, RecD/TraA family n=9 Tax=Bacteria RepI... 431 e-119 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 431 e-119 UniRef50_A5CCM9 Helicase RecD/TraA, ATP-dependent exoDNAse (Exon... 431 e-119 UniRef50_A6L5S1 ATP-dependent exonuclease V, alpha subunit-helic... 430 e-119 UniRef50_D1NBM8 Helicase, RecD/TraA family n=1 Tax=Victivallis v... 430 e-119 UniRef50_B0S3H7 ATP-dependent exodeoxyribonuclease alpha subunit... 429 e-118 UniRef50_B2JBK4 Exodeoxyribonuclease V, alpha chain n=2 Tax=Nost... 428 e-118 UniRef50_B8FBC1 Helicase, RecD/TraA family n=1 Tax=Desulfatibaci... 427 e-118 UniRef50_C7LVF6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=De... 427 e-118 UniRef50_UPI00016C4690 helicase, RecD/TraA family protein n=1 Ta... 427 e-118 UniRef50_C6NU54 Exodeoxyribonuclease V alpha chain n=1 Tax=Acidi... 427 e-118 UniRef50_D2S7J1 Helicase, RecD/TraA family n=15 Tax=Actinomyceta... 426 e-118 UniRef50_Q15V09 DNA helicase/exodeoxyribonuclease V, alpha subun... 426 e-117 UniRef50_P45158 Exodeoxyribonuclease V alpha chain n=19 Tax=Past... 426 e-117 UniRef50_C3X2X3 DNA helicase n=2 Tax=Oxalobacter formigenes RepI... 425 e-117 UniRef50_Q3B471 DNA helicase/exodeoxyribonuclease V, alpha subun... 425 e-117 UniRef50_D0IXL7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Co... 423 e-117 UniRef50_A4JS83 DNA helicase/exodeoxyribonuclease V, alpha subun... 423 e-117 UniRef50_B2A8J3 Helicase, RecD/TraA family n=2 Tax=Clostridia Re... 423 e-117 UniRef50_A4SEL8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 422 e-116 UniRef50_D0YW55 Exodeoxyribonuclease V alpha chain n=3 Tax=Gamma... 422 e-116 UniRef50_A9KS02 Helicase, RecD/TraA family n=32 Tax=Bacteria Rep... 421 e-116 UniRef50_D0LH80 Helicase, RecD/TraA family n=1 Tax=Haliangium oc... 421 e-116 UniRef50_C6BXI3 Helicase, RecD/TraA family n=5 Tax=Desulfovibrio... 419 e-115 UniRef50_C9RK23 Helicase, RecD/TraA family n=1 Tax=Fibrobacter s... 418 e-115 UniRef50_B1I2W6 Helicase, RecD/TraA family n=1 Tax=Candidatus De... 417 e-115 UniRef50_O34481 Uncharacterized protein yrrC n=119 Tax=Bacillale... 416 e-115 UniRef50_B1XZ26 Exodeoxyribonuclease V, alpha subunit n=4 Tax=ce... 416 e-114 UniRef50_C0AD34 Exodeoxyribonuclease V n=2 Tax=Verrucomicrobia R... 415 e-114 UniRef50_Q2LTP5 Exodeoxyribonuclease V alpha chain n=22 Tax=Bact... 415 e-114 UniRef50_B8I4C3 Exonuclease V subunit alpha n=1 Tax=Clostridium ... 414 e-114 UniRef50_C7IID4 Exonuclease V subunit alpha n=1 Tax=Clostridium ... 413 e-114 UniRef50_D1N1Q4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Vi... 413 e-114 UniRef50_B0MLK7 Putative uncharacterized protein n=1 Tax=Eubacte... 413 e-113 UniRef50_Q0AAH8 DNA helicase/exodeoxyribonuclease V, alpha subun... 412 e-113 UniRef50_C0QEU8 RecD1 n=2 Tax=Desulfobacterales RepID=C0QEU8_DESAH 412 e-113 UniRef50_C5SD04 Helicase, RecD/TraA family n=1 Tax=Allochromatiu... 412 e-113 UniRef50_Q89AB2 Exodeoxyribonuclease V alpha chain n=1 Tax=Buchn... 412 e-113 UniRef50_D1U587 Helicase, RecD/TraA family n=2 Tax=Desulfovibrio... 411 e-113 UniRef50_D1VRZ7 Helicase, RecD/TraA family n=1 Tax=Peptoniphilus... 411 e-113 UniRef50_B4X4Z2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 411 e-113 UniRef50_A4XG10 ATP-dependent DNA helicase, RecD/TraA family n=2... 411 e-113 UniRef50_B4VXL3 Putative uncharacterized protein n=1 Tax=Microco... 411 e-113 UniRef50_A6GES1 Exodeoxyribonuclease V n=1 Tax=Plesiocystis paci... 410 e-112 UniRef50_D2RL74 Helicase, RecD/TraA family n=2 Tax=Acidaminococc... 408 e-112 UniRef50_A6TL79 Helicase, RecD/TraA family n=35 Tax=Bacteria Rep... 407 e-112 UniRef50_C1AXR1 Exodeoxyribonuclease V alpha chain n=5 Tax=Nocar... 407 e-112 UniRef50_A6DNF1 Exonuclease V (RecBCD complex), alpha chain n=1 ... 407 e-112 UniRef50_A8SM75 Putative uncharacterized protein n=1 Tax=Parvimo... 406 e-111 UniRef50_C0ZAR4 Putative uncharacterized protein n=1 Tax=Breviba... 404 e-111 UniRef50_C7RH25 Helicase, RecD/TraA family n=4 Tax=Anaerococcus ... 404 e-111 UniRef50_UPI0001C37B34 RecD/TraA family helicase n=1 Tax=Ruminoc... 404 e-111 UniRef50_Q8R8A3 ATP-dependent exoDNAse (Exonuclease V), alpha su... 404 e-111 UniRef50_Q480P0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Co... 402 e-110 UniRef50_C8P085 RecD/TraA family helicase n=1 Tax=Erysipelothrix... 402 e-110 UniRef50_A1HT63 Helicase, RecD/TraA family n=1 Tax=Thermosinus c... 401 e-110 UniRef50_A6NZ80 Putative uncharacterized protein n=1 Tax=Bactero... 401 e-110 UniRef50_B0UUC7 Exodeoxyribonuclease V, alpha subunit n=9 Tax=ce... 400 e-110 UniRef50_C9KLF6 Helicase, RecD/TraA family n=3 Tax=Veillonellace... 399 e-109 UniRef50_C7H0P7 Helicase, RecD/TraA family n=1 Tax=Eubacterium s... 399 e-109 UniRef50_Q14LX3 Putative exodeoxyribonuclease v alpha subunit pr... 399 e-109 UniRef50_Q5WHN2 ATP-dependent exoDNAse alpha subunit n=2 Tax=Bac... 399 e-109 UniRef50_Q03EZ9 ATP-dependent DNA helicase, RecD/TraA family n=1... 395 e-108 UniRef50_C2KY21 Possible exodeoxyribonuclease V alpha subunit n=... 394 e-108 UniRef50_B1C665 Putative uncharacterized protein n=1 Tax=Anaerof... 394 e-108 UniRef50_B0P921 Putative uncharacterized protein n=2 Tax=Clostri... 394 e-108 UniRef50_D1T987 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Bu... 394 e-108 UniRef50_A8ZX97 Helicase, RecD/TraA family n=1 Tax=Desulfococcus... 393 e-107 UniRef50_D0KVH2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ha... 392 e-107 UniRef50_D1PL62 Helicase, RecD/TraA family n=3 Tax=Ruminococcace... 391 e-107 UniRef50_B0P898 Putative uncharacterized protein n=3 Tax=Bacteri... 390 e-107 UniRef50_Q039P4 ATP-dependent DNA helicase, RecD/TraA family n=9... 390 e-107 UniRef50_A5ZS54 Putative uncharacterized protein n=2 Tax=Clostri... 390 e-106 UniRef50_B2JKV2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Bu... 389 e-106 UniRef50_Q3AB49 Helicase, RecD/TraA family n=1 Tax=Carboxydother... 389 e-106 UniRef50_A5N3G4 Predicted exodeoxyribonuclease n=26 Tax=Clostrid... 388 e-106 UniRef50_A7VSJ6 Putative uncharacterized protein n=1 Tax=Clostri... 387 e-106 UniRef50_B0TIF8 Exodeoxyribonuclease V, alpha chain, RecD n=1 Ta... 387 e-106 UniRef50_Q04B55 ATP-dependent DNA helicase, RecD/TraA family n=2... 386 e-105 UniRef50_UPI00016C0EC6 helicase, RecD/TraA family protein n=1 Ta... 385 e-105 UniRef50_Q1WTZ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Lacto... 385 e-105 UniRef50_Q8EPS6 Conjugation transfer protein n=1 Tax=Oceanobacil... 385 e-105 UniRef50_A9WGW5 Helicase, RecD/TraA family n=4 Tax=Chloroflexi (... 384 e-105 UniRef50_C6VR87 Exodeoxyribonuclease V, alpha chain n=44 Tax=Bac... 384 e-105 UniRef50_D2ELG1 RecD/TraA family helicase n=1 Tax=Pediococcus ac... 384 e-105 UniRef50_Q8NW86 MW1569 protein n=68 Tax=Bacillales RepID=Q8NW86_... 384 e-105 UniRef50_C7Q0I8 Helicase, RecD/TraA family n=1 Tax=Catenulispora... 383 e-104 UniRef50_A8SRT9 Putative uncharacterized protein n=1 Tax=Coproco... 382 e-104 UniRef50_A4S3Z4 Predicted protein (Fragment) n=37 Tax=Eukaryota ... 382 e-104 UniRef50_C9LLQ3 Helicase, RecD/TraA family n=1 Tax=Dialister inv... 381 e-104 UniRef50_A8VTZ2 Exodeoxyribonuclease V n=1 Tax=Bacillus seleniti... 381 e-104 UniRef50_C9B1G0 Helicase RecD/TraA n=4 Tax=Enterococcus RepID=C9... 380 e-103 UniRef50_C0XKM5 Exodeoxyribonuclease V alpha subunit n=3 Tax=Lac... 379 e-103 UniRef50_B2A0E3 Helicase, RecD/TraA family n=3 Tax=Bacteria RepI... 379 e-103 UniRef50_C5SAK6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 379 e-103 UniRef50_C4V2J7 Exodeoxyribonuclease V alpha subunit n=1 Tax=Sel... 378 e-103 UniRef50_C3CTA5 Helicase RecD/TraA n=1 Tax=Bacillus thuringiensi... 378 e-103 UniRef50_D2AQX1 Exodeoxyribonuclease V n=1 Tax=Streptosporangium... 378 e-103 UniRef50_C3RPY6 Exonuclease V subunit alpha n=1 Tax=Mollicutes b... 377 e-103 UniRef50_D0BKH5 Helicase, RecD/TraA family n=2 Tax=Granulicatell... 377 e-103 UniRef50_Q1J056 Helicase RecD/TraA n=3 Tax=Deinococcus RepID=Q1J... 377 e-103 UniRef50_C1MI09 Predicted protein n=1 Tax=Micromonas pusilla CCM... 376 e-102 UniRef50_UPI0000E0F58B exodeoxyribonuclease V, alpha subunit n=1... 376 e-102 UniRef50_C0QIP1 RecD3 n=1 Tax=Desulfobacterium autotrophicum HRM... 375 e-102 UniRef50_D0L8X2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Co... 375 e-102 UniRef50_Q7NQR4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 375 e-102 UniRef50_B2G6M2 Exodeoxyribonuclease V alpha subunit n=8 Tax=Lac... 374 e-102 UniRef50_A0LD23 Helicase, RecD/TraA family n=1 Tax=Magnetococcus... 374 e-102 UniRef50_C2E8D7 Exodeoxyribonuclease V alpha chain n=1 Tax=Lacto... 374 e-102 UniRef50_C4FTN2 Putative uncharacterized protein n=1 Tax=Catonel... 374 e-102 UniRef50_C7PDT2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ch... 373 e-101 UniRef50_B7J7Z5 Helicase, RecD/TraA family n=1 Tax=Acidithiobaci... 372 e-101 UniRef50_D1BM66 Helicase, RecD/TraA family n=3 Tax=Veillonella R... 372 e-101 UniRef50_C8PAU3 Exodeoxyribonuclease V alpha subunit n=1 Tax=Lac... 371 e-101 UniRef50_C1ACJ0 Exodeoxyribonuclease V alpha subunit n=1 Tax=Gem... 371 e-101 UniRef50_Q310C7 ATP-dependent DNA helicase, RecD/TraA family n=4... 371 e-101 UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ac... 369 e-100 UniRef50_C3RKU1 Exodeoxyribonuclease subunit V alpha n=4 Tax=Bac... 367 e-100 UniRef50_D1B8Y6 Helicase, RecD/TraA family n=1 Tax=Thermanaerovi... 366 1e-99 UniRef50_A6P2F0 Putative uncharacterized protein n=1 Tax=Bactero... 365 2e-99 UniRef50_C0VHS0 Exonuclease V alpha subunit n=7 Tax=Acinetobacte... 365 3e-99 UniRef50_Q6MFB5 Putative exodeoxyribonuclease V alpha chain recD... 365 3e-99 UniRef50_B4RTM2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Al... 364 6e-99 UniRef50_A3ETY4 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Le... 364 6e-99 UniRef50_UPI0001AEC2FF exodeoxyribonuclease V, alpha subunit n=1... 363 9e-99 UniRef50_C5RAF5 Exodeoxyribonuclease V alpha subunit n=1 Tax=Wei... 363 1e-98 UniRef50_Q314D9 ATP-dependent DNA helicase, RecD/TraA family n=1... 362 2e-98 UniRef50_UPI0001B44E5F RecD/TraA family helicase n=1 Tax=Clostri... 362 3e-98 UniRef50_D2S6B9 Exodeoxyribonuclease V n=1 Tax=Geodermatophilus ... 362 3e-98 UniRef50_D0W4K0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ne... 360 1e-97 UniRef50_Q8K9A8 Exodeoxyribonuclease V alpha chain n=4 Tax=Buchn... 359 1e-97 UniRef50_A5EVY1 Exonuclease V, alpha subunit n=1 Tax=Dichelobact... 359 2e-97 UniRef50_UPI0001C367B5 helicase, RecD/TraA family protein n=1 Ta... 358 3e-97 UniRef50_D0LWH5 Exodeoxyribonuclease V n=1 Tax=Haliangium ochrac... 358 3e-97 UniRef50_UPI0001C3224F exodeoxyribonuclease V, alpha subunit n=2... 358 4e-97 UniRef50_D1R7X6 Putative uncharacterized protein n=1 Tax=Parachl... 358 4e-97 UniRef50_B1MY70 ATP-dependent exoDNAse (Exonuclease V), alpha su... 357 7e-97 UniRef50_B1YJE6 Helicase, RecD/TraA family n=2 Tax=Exiguobacteri... 356 1e-96 UniRef50_A8RCB5 Putative uncharacterized protein n=1 Tax=Eubacte... 356 1e-96 UniRef50_A5WER9 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Ps... 355 2e-96 UniRef50_D2MPX0 Helicase, RecD/TraA family n=1 Tax=Bulleidia ext... 354 4e-96 UniRef50_Q057F4 Exodeoxyribonuclease V, a chain n=1 Tax=Buchnera... 354 8e-96 UniRef50_A9NFP8 ATP-dependent exoDNAse (Exonuclease V), alpha su... 353 1e-95 UniRef50_A6W6P3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ki... 352 2e-95 UniRef50_A0R7T4 ATPase n=1 Tax=Pelobacter propionicus DSM 2379 R... 352 3e-95 UniRef50_C8PVE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=En... 350 1e-94 UniRef50_Q0BMQ9 Exodeoxyribonuclease V n=20 Tax=Francisella RepI... 349 2e-94 UniRef50_C8XGW8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Na... 345 3e-93 UniRef50_C5B4P9 Putative Helicase, RecD/TraA family n=1 Tax=Meth... 345 3e-93 UniRef50_Q6FF15 Exonuclease V, alpha subunit n=11 Tax=Acinetobac... 345 4e-93 UniRef50_B4RLU6 RecD n=26 Tax=Neisseria RepID=B4RLU6_NEIG2 344 5e-93 UniRef50_B5JHU9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ve... 341 5e-92 UniRef50_A1KCB0 DNA helicase, ATP-dependent dsDNA/ssDNA exonucle... 340 6e-92 UniRef50_A4VZ41 ATP-dependent exoDNAse (Exonuclease V), alpha su... 340 1e-91 UniRef50_B9YCG7 Putative uncharacterized protein n=1 Tax=Holdema... 340 1e-91 UniRef50_C6HV36 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Le... 340 1e-91 UniRef50_Q12LP3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Sh... 338 5e-91 UniRef50_P96919 Exodeoxyribonuclease V alpha chain n=27 Tax=Acti... 337 5e-91 UniRef50_Q30PF5 ATPase n=2 Tax=Campylobacterales RepID=Q30PF5_SULDN 337 5e-91 UniRef50_A2C8A4 Possible exodeoxyribonuclease V 67 kD polypeptid... 337 6e-91 UniRef50_C5NYT1 Helicase, RecD/TraA family n=1 Tax=Gemella haemo... 337 8e-91 UniRef50_C4GL20 Putative uncharacterized protein n=1 Tax=Kingell... 337 1e-90 UniRef50_A9BB03 Possible exodeoxyribonuclease V 67 kD polypeptid... 336 2e-90 UniRef50_Q04EW7 ATP-dependent DNA helicase, RecD/TraA family n=2... 335 4e-90 UniRef50_Q97JX9 Exodeoxyribonuclease V, Alpha subunit, RecD n=1 ... 335 4e-90 UniRef50_B2I7Y3 Exodeoxyribonuclease V, alpha subunit n=10 Tax=X... 332 2e-89 UniRef50_Q7VBJ9 ATP-dependent exoDNAse alpha subunit n=1 Tax=Pro... 332 2e-89 UniRef50_Q0IBA7 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Sy... 330 1e-88 UniRef50_C9LC87 Helicase, RecD/TraA family n=6 Tax=Clostridiales... 328 5e-88 UniRef50_C3CUT3 Helicase, RecD/TraA n=1 Tax=Bacillus thuringiens... 328 5e-88 UniRef50_C7XTE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=La... 326 1e-87 UniRef50_Q6ANK0 Related to exodeoxyribonuclease V, alpha chain n... 326 2e-87 UniRef50_A8S078 Putative uncharacterized protein n=1 Tax=Clostri... 326 2e-87 UniRef50_C8NA26 Probable exonuclease V, alpha subunit n=1 Tax=Ca... 325 4e-87 UniRef50_Q46K41 DNA helicase/exodeoxyribonuclease V, alpha subun... 323 9e-87 UniRef50_Q04YR4 Exodeoxyribonuclease V, alpha subunit n=4 Tax=Le... 323 1e-86 UniRef50_C0DUX7 Putative uncharacterized protein n=1 Tax=Eikenel... 323 1e-86 UniRef50_A8EUL3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Ar... 320 7e-86 UniRef50_Q6F1E4 Exodeoxyribonuclease V n=1 Tax=Mesoplasma florum... 320 1e-85 UniRef50_UPI0001C31D3E helicase, RecD/TraA family n=1 Tax=Conexi... 319 2e-85 UniRef50_A4AB31 Putative uncharacterized protein n=1 Tax=Congreg... 317 1e-84 UniRef50_D2U880 Probable exodeoxyribonuclease v, alpha subunit p... 316 1e-84 UniRef50_C8X8R3 Exodeoxyribonuclease V n=1 Tax=Nakamurella multi... 316 2e-84 UniRef50_Q6A849 Exonuclease V, alpha chain n=3 Tax=Propionibacte... 316 2e-84 UniRef50_A4JFN0 AAA ATPase n=1 Tax=Burkholderia vietnamiensis G4... 315 2e-84 UniRef50_UPI00016C66E9 RecD/TraA family helicase n=1 Tax=Clostri... 315 4e-84 UniRef50_B0SIS5 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Le... 314 5e-84 UniRef50_A6P2H5 Putative uncharacterized protein n=1 Tax=Bactero... 314 8e-84 UniRef50_Q6N7J7 Possible Viral (Superfamily 1) RNA helicase n=1 ... 313 1e-83 UniRef50_B7C7R4 Putative uncharacterized protein (Fragment) n=1 ... 312 2e-83 UniRef50_D1J8K8 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycop... 310 1e-82 UniRef50_C6J5U6 Exodeoxyribonuclease V (Fragment) n=1 Tax=Paenib... 309 2e-82 UniRef50_Q3AX67 DNA helicase/exodeoxyribonuclease V, alpha subun... 306 2e-81 UniRef50_A4A3A3 Putative uncharacterized protein n=1 Tax=Congreg... 303 1e-80 UniRef50_C5B4H6 Putative Helicase, RecD/TraA family n=1 Tax=Meth... 302 2e-80 UniRef50_A5IZI9 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycop... 302 2e-80 UniRef50_B5IMW7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Cy... 300 8e-80 UniRef50_C1XYZ4 Putative uncharacterized protein n=1 Tax=Meiothe... 298 4e-79 Sequences not found previously or not previously below threshold: >UniRef50_P04993 Exodeoxyribonuclease V alpha chain n=123 Tax=Enterobacteriaceae RepID=EX5A_ECOLI Length = 608 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 608/608 (100%), Positives = 608/608 (100%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN Sbjct: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA Sbjct: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT Sbjct: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL Sbjct: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ Sbjct: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR Sbjct: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD Sbjct: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR Sbjct: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK Sbjct: 481 PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL Sbjct: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 Query: 601 AALFSSRE 608 AALFSSRE Sbjct: 601 AALFSSRE 608 >UniRef50_C4K847 Exonuclease V (RecBCD complex), alpha chain n=18 Tax=Enterobacteriaceae RepID=C4K847_HAMD5 Length = 628 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 316/627 (50%), Positives = 419/627 (66%), Gaps = 23/627 (3%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN- 61 + L +A++ K LR LDVQFA +A P + LA ALLS DAG GHVCLPL+RL Sbjct: 1 MMGLLNQALDQKLLRFLDVQFAQIIAAHHSPLLQLACALLSSDAGAGHVCLPLARLAPEY 60 Query: 62 --EASHPLLATCVSEI---GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 + HP LA + + W +S V G PTP++L +RLYL RMW NE Sbjct: 61 FFDGRHPELAEALWQAAGKPNKNAWLNAFQSSSLVGEGTSPTPLVLEKERLYLQRMWKNE 120 Query: 117 ----RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVALTRRISVISG 171 + ++ + E + DE L Q LD+LF ++ +IN+QKVAAAVA+T ++++ISG Sbjct: 121 GQVIQFISDYSLEKMTYHKKDECRLKQILDQLFTSNESDINFQKVAAAVAITSKVAIISG 180 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GPGTGKTTTVAKLL ALI++A RI LAAPTGKAA RLT+SLG A R+L L+ + + Sbjct: 181 GPGTGKTTTVAKLLTALIRLAGERTLRIELAAPTGKAAVRLTQSLGNAYRELSLSAGESR 240 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 R+PE A TLHRLLGA + R+H NPL LDVLVVDEASM+DLPM++RLIDALP+ A+ Sbjct: 241 RLPEKACTLHRLLGAYSKGHQSRYHKNNPLDLDVLVVDEASMVDLPMLARLIDALPNSAQ 300 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL--- 348 VIFLGDRDQLASVEAG+VLG+I + + G++ RA +L+RLTG + +L Sbjct: 301 VIFLGDRDQLASVEAGSVLGEIGRFLSLGYSTSRAEELNRLTGYDLKGHPIEHFPNLCVA 360 Query: 349 --RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ---DFTDIEKRLLQSGED 403 D LCLL K+YRF SGIG+LA A+N G+ ++ + + DI + L +D Sbjct: 361 HVCDQLCLLNKNYRFDKKSGIGELAQAVNSGEHHKAHSILRDVNKKYVDIRQHALSDAKD 420 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 Y +L++ +A Y YL+L++ +P+ I+ AFN YQLLCALR G FG+ GLN +IE+ + Sbjct: 421 YQKLLKDCVAAYQPYLELIKQGKDPETILHAFNRYQLLCALRTGSFGLEGLNTQIEKTLC 480 Query: 464 QKRKI---HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNI 519 + + ++ WY GRP+MI NDS+LGLFNGD+G+ L D RV+F DG+I Sbjct: 481 HSGLLSLSQKPFNNSWYSGRPIMIECNDSSLGLFNGDLGMTLYDHSGALRVYFQFSDGHI 540 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 KSVQP+RLP H T +AMTVHKSQGSEF+H AL+LP TP+VTRELVYTA+TRAR++L+L Sbjct: 541 KSVQPNRLPAHSTAYAMTVHKSQGSEFEHTALVLPDHFTPIVTRELVYTAITRARQKLTL 600 Query: 580 YADERILSAAIATRTERRSGLAALFSS 606 Y+ +++L+ AI T T+RRSGL A S Sbjct: 601 YSTDKVLNHAILTPTQRRSGLVARLKS 627 >UniRef50_A7FFE8 Exodeoxyribonuclease V, alpha subunit n=30 Tax=Enterobacteriaceae RepID=A7FFE8_YERP3 Length = 657 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 358/653 (54%), Positives = 441/653 (67%), Gaps = 49/653 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE 62 + L +A + LRPLDVQF+ +AGD+ P + LAAA+LS + G GHVCLPL L+ Sbjct: 1 MMTLLAQAARDRLLRPLDVQFSRMIAGDDDPRLQLAAAILSAEVGAGHVCLPLRYLQPEL 60 Query: 63 ASHPLLATCVSEI------GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 + + W + L + VS G +PTP++L +RLYL RMW E Sbjct: 61 LFGGRQPDLSLALWQAAGSPDKAQWLQALQNAPVVSDGSQPTPLVLQQERLYLQRMWQYE 120 Query: 117 RTVARF--------------FNEVNHAIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVA 161 V +F A VDE+LL +TLD LF + E++WQKVAAAVA Sbjct: 121 GDVVQFIASDSVFINRDSDFMTSKGIATSVDESLLRETLDALFGYAGSEVDWQKVAAAVA 180 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 TRRISVISGGPGTGKTTTVAKLL ALI+++ G+R RI+LAAPTGKAAARLTESLGKA+R Sbjct: 181 ATRRISVISGGPGTGKTTTVAKLLTALIRISQGQRLRIQLAAPTGKAAARLTESLGKAIR 240 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 Q LTD+++K P+ ASTLHRLLG QP SQRLR+H GNPL+LDVLVVDEASM+DLPMM+R Sbjct: 241 QFSLTDDERKLFPDQASTLHRLLGVQPNSQRLRYHRGNPLNLDVLVVDEASMVDLPMMAR 300 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV---- 337 LI ALP A+VIFLGDRDQLASVEAGAVLGDIC +A G++ +RA+QL++LTG + Sbjct: 301 LIAALPAKAKVIFLGDRDQLASVEAGAVLGDICRFAELGYSEQRAQQLTQLTGYLLTNNA 360 Query: 338 ---------------------PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 P T +++A++RDSLCLL+KSYRF SGIGQLA A+N Sbjct: 361 LTSNVLASNVLTNKALANKAQPDETYSDSANVRDSLCLLRKSYRFDEKSGIGQLALAVNA 420 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 G+ +V ++D+E+ L EDY +LE GY YL+ + A A ++ AF Sbjct: 421 GEYRQALSVLNSAYSDVERFPLADEEDYQVLLEACAVGYQHYLERVAALAPAAEVLAAFG 480 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR--HPHSRWYEGRPVMIARNDSALGLF 494 YQLLCALR GPFGV+GLNERIEQ + +K I R P RWY GRPVMI NDSALGLF Sbjct: 481 RYQLLCALRSGPFGVSGLNERIEQVLHRKGFIIRPSGPSGRWYVGRPVMIELNDSALGLF 540 Query: 495 NGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 NGDIGIAL +G RV+F +PDGNIKSVQPSRLP HET +AMTVHKSQGSEF+H AL+L Sbjct: 541 NGDIGIALHDNEGELRVYFQLPDGNIKSVQPSRLPSHETAYAMTVHKSQGSEFEHTALVL 600 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 P+ PV+TRELVYTA+TRAR+ L+LY + +LS AI T T R SGL ++ Sbjct: 601 PNTFMPVLTRELVYTAITRARQHLTLYCSDAVLSHAIRTPTLRLSGLVDRLNT 653 >UniRef50_Q2LTC7 Exodeoxyribonuclease V alpha chain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LTC7_SYNAS Length = 670 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 260/670 (38%), Positives = 349/670 (52%), Gaps = 73/670 (10%) Query: 3 LQKQLLEAVEHKQ------------LRPLDVQFAL---TVAGDEHPAVTLAAALLSHDAG 47 + L + + LD F ++G ++ V LAAAL S Sbjct: 1 MTDLLKRILRKGEMPMLPDEALLFYFSDLDRHFGRLMEKISGGDNQDVFLAAALTSRSNR 60 Query: 48 EGHVCLPLSRLENNEASHP------------LLATCVSEIGELQNWEECLLASQAVSRGD 95 GHVCL L+ + + + L W E LLA V Sbjct: 61 GGHVCLDLAEYAGRPLMADIREEPEDEILEEMPESILLSCPPLSIWRETLLACSVVGTPG 120 Query: 96 EPTPMILCGD-RLYLNRMWCNERTVARFFN-----------EVNHAIEVDEALLAQTLDK 143 E P+IL RLYL R W E T+ RF + +D + L L Sbjct: 121 EYKPLILDDKSRLYLYRYWSYEDTLVRFIKSCGNPAESEDFRKISNVSLDLSGLGHNLQT 180 Query: 144 LFPVSDE------------INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 FP +WQK+AA L R+ VISG PGTGKTTT A+ LA L + Sbjct: 181 FFPEDAGQFRFEDDKSKIFPDWQKIAALAVLRNRLVVISGSPGTGKTTTAARALALLQIL 240 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 + G + RI LAAPTGKAA RL E++ A ++ L D+Q A T+HRLLG GS Sbjct: 241 SRGPKLRIALAAPTGKAAVRLDEAMNSAYARVGLNDQQG-----KAMTVHRLLGTVAGSP 295 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 RH GNPL DV+VVDEASM+DLP+M++L+ AL +R+I LGDRDQLASVEAGAVLG Sbjct: 296 YFRHGPGNPLPYDVIVVDEASMVDLPLMAKLVQALSPASRLILLGDRDQLASVEAGAVLG 355 Query: 312 DICAYANAGFTAERARQ-----------LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 D+C +AG +A + L + H+P + DS+ LQK+YR Sbjct: 356 DLCGPDDAGNFFSQAFRQEIRRMTGESCLPPVPFRHLPPVPFRHLPPVSDSMVQLQKNYR 415 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDF-TDIEKRLLQSGEDYIAMLEEALAGY-GRY 418 F +SGIGQL+ A+NRGDK V ++ +DI L ++EE L Y +Y Sbjct: 416 FDENSGIGQLSRAVNRGDKDRVFSILNSSRCSDIAWENLPDPLGLPRLIEENLIHYFRKY 475 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 + ++ P++I F +++LCALR GPFGV +N +E ++ +R I RWY Sbjct: 476 MQMVINNDNPEVIFDYFERFRILCALRRGPFGVVYVNALLESMLRSERLI--AGSGRWYP 533 Query: 479 GRPVMIARNDSALGLFNGDIGIALDR--GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 GRP+MI RND +LGLFNGD+G+ L G G V+F +GN + P RLPEHET +AM Sbjct: 534 GRPIMINRNDYSLGLFNGDVGLTLPEHGGSGLSVFFRDSEGNFRRFAPFRLPEHETVYAM 593 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 TVHKSQGSEFD +IL + +P++TREL+YT V+RA++ L L+ E I+ AI+ R +R Sbjct: 594 TVHKSQGSEFDEVLMILSDRDSPLLTRELIYTGVSRAKKGLLLWGREDIIRQAISRRIKR 653 Query: 597 RSGLAALFSS 606 SGL Sbjct: 654 TSGLRDALWE 663 >UniRef50_B9M4M2 Exodeoxyribonuclease V, alpha subunit n=8 Tax=Desulfuromonadales RepID=B9M4M2_GEOSF Length = 609 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 243/603 (40%), Positives = 347/603 (57%), Gaps = 27/603 (4%) Query: 16 LRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 +D FA + A + + LAAAL S G+VCL L+ + + A + Sbjct: 16 FSDMDRHFAAFMCRLASSDDKELWLAAALASQAVSNGNVCLDLTDVCQSAAGY------- 68 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNEVNHAIE 131 EI + W L V + TP++L +RLYL+R W E +AR + Sbjct: 69 -EIDDPAAWSARLRELPVVGAPGDFTPLVLDSANRLYLHRYWSYESDLARALLRLADNKP 127 Query: 132 V-DEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 V D LL + + +LFP + E +WQ++AA ++R+I+VI+GGPGTGKT+TV ++L L Sbjct: 128 VFDRELLREGMSRLFPEGNAGETDWQQLAALACVSRQITVIAGGPGTGKTSTVFRVLILL 187 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 I+ A +C I LAAPTGKAA RL ES+ A +P+++ ++IP +T+HRLLG P Sbjct: 188 IEQATAGKCHIALAAPTGKAAGRLGESIISARSGMPVSEHVLQQIPNQVTTIHRLLGHVP 247 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 GS R R++ NPL DV+VVDEASM+ LP+M++L+DAL D R+I LGDRDQLASVEAGA Sbjct: 248 GSSRFRYNRDNPLPFDVVVVDEASMVSLPLMAKLVDALRDTTRLILLGDRDQLASVEAGA 307 Query: 309 VLGDICAYANAGFTAERARQLSRL---TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 VLGDIC ++ ++ R L+ G + + L DS+ +L+KSYRFG+DS Sbjct: 308 VLGDICNTGSSQRLSKAFRDLAEEVIGPGAAIEYADDADVHHLNDSIIVLRKSYRFGADS 367 Query: 366 GIGQLAAAINRGDKTAVKTVFQ-QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 GIG+L +N G+ A + Q + D+ R E L + R + + Sbjct: 368 GIGELGRLVNEGNGAAALELLSGQKYADLLFRENTGMEKLQEALAVTITDGFRPYLMAKT 427 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 + + ++++LCALR+GPFG +N + + + +K I PH RWY G+PVM+ Sbjct: 428 ---AESAFASLADFRILCALRQGPFGTEAVNRLVAKILAEKGLI--RPHGRWYAGQPVMV 482 Query: 485 ARNDSALGLFNGDIGIALDR---GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 RND L LFNGDIGI L R +F DG+++S+ P RLPEHET +AMTVHKS Sbjct: 483 TRNDYNLRLFNGDIGIILPDPAADNELRAFFTTTDGSLRSILPLRLPEHETAFAMTVHKS 542 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 QGSEF L+LP + + V+TREL+YTA+TRA+ + + + + A RT R+SGL Sbjct: 543 QGSEFSRILLLLPDRHSEVLTRELIYTALTRAKTGVEVCGPGDVFVKSSARRTLRKSGLR 602 Query: 602 ALF 604 Sbjct: 603 EAL 605 >UniRef50_D0ICR8 Exodeoxyribonuclease V alpha chain n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0ICR8_VIBHO Length = 665 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 301/669 (44%), Positives = 394/669 (58%), Gaps = 66/669 (9%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSR 57 M + ++L + +R +D QF+ + GDE+ V AAL+S + G+G+VC+ LS Sbjct: 1 MAISEKLEALYKRNAIRAIDRQFSQFIGEQLGDENSPVVGWAALVSFELGKGNVCVDLSA 60 Query: 58 LENNEASHPLLATC--VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 LE + A ++ + +N L AS V G +PTP++L G RLYL R W Sbjct: 61 LEGARLFDLMPAESASLAALMVPENALSMLSASPVVGDGSQPTPLVLSGSRLYLYRYWAA 120 Query: 116 ERTVARFFNEVN-----------------------------------------------H 128 E V + + Sbjct: 121 ECLVVSEIAKRSGELPLPMNLRSVLDGLFTPDVAFLRARYPQWTDEEKAAKLADFFDITD 180 Query: 129 AIEVDEALLAQTLDKLFPVSD---------EINWQKVAAAVALTRRISVISGGPGTGKTT 179 + ++D L L+ +D +NWQKVAAAVAL+ R +VISGGPGTGKTT Sbjct: 181 SSQIDYHALQAALEAGVSDNDVLSHVPDGARLNWQKVAAAVALSSRFAVISGGPGTGKTT 240 Query: 180 TVAKLLAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TVAKLLAA++ +D I+L APTGKAA RLTES+GKA+ LP+TD +++IP AS Sbjct: 241 TVAKLLAAIVSSSDNPNGPEIKLVAPTGKAANRLTESIGKAVEALPVTDSVRRKIPAQAS 300 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLLGA P RHH GN LHLDVLVVDEASM+DLP+M+RL+ ALP+HARVI LGDR Sbjct: 301 TIHRLLGAIPNRVEFRHHQGNRLHLDVLVVDEASMVDLPLMARLLSALPEHARVILLGDR 360 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQLASVEAGAVLGDIC A GF+ RA+ LS LTG +P G A + DS+CLL+KS Sbjct: 361 DQLASVEAGAVLGDICLGAGQGFSPPRAKLLSALTGFVLPEAAGLPA--VADSVCLLRKS 418 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 YRF + SG+GQLA AIN GD + V Q F DI L + + Y + A+ GY Y Sbjct: 419 YRFHAQSGVGQLAYAINAGDTRTLDRVIQSGFRDIALHELDT-DIYSEAIHLAVQGYRPY 477 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 L + P +++ F+E +LLCAL +GPFGV GLN IE+ + + + +Y Sbjct: 478 LTAMVDGLPPRDVLRRFSECRLLCALSDGPFGVKGLNSVIEKALAKAGLVSP-GEESFYP 536 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 GRPVM+ +ND LGL+NGDIGI + + +G RV F M DG +++ PSRLPEH+T +AMT+ Sbjct: 537 GRPVMVTQNDHGLGLYNGDIGIVVKQEEGLRVVFEMADGTVRAFLPSRLPEHQTAYAMTI 596 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF H L+LP TPV+TRELVYT VTRA+ RL +YA L A+ + +R S Sbjct: 597 HKSQGSEFSHTILVLPPTPTPVMTRELVYTGVTRAKDRLDVYATRASLERAVKRKNQRFS 656 Query: 599 GLAALFSSR 607 GLA +R Sbjct: 657 GLADALRAR 665 >UniRef50_C4L7B4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7B4_TOLAT Length = 632 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 283/617 (45%), Positives = 369/617 (59%), Gaps = 23/617 (3%) Query: 8 LEAVEHKQLRPLDVQFALTVAG-DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA--- 63 +E + LR LDVQ A +A D +V LA AL S + G GHVC LS A Sbjct: 13 QALLEARLLRDLDVQLAQLLARWDADESVQLAVALTSQELGRGHVCFDLSTWPERLAQWQ 72 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT-------PMILCGDRLYLNRMWCNE 116 + A + + L S V +P+ P+ L RLYL+R + E Sbjct: 73 AQLSQAALSWPETTVAALDAKLQQSPLVRVITDPSDAEEQGQPLTLFAGRLYLSRYFRFE 132 Query: 117 RTVARFFNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 + VA + + + + V+ LA L +LF E +WQ VA A A R ++ISGGPG Sbjct: 133 QQVACWLQQASLPADNAVNATELAAQLRQLFTPQPETDWQAVAVATACEGRFTLISGGPG 192 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP--LTDEQKKR 232 TGKTTTV KLLA L+ ++ IRLAAPTGKAAARLTES+ KA +L + + + Sbjct: 193 TGKTTTVTKLLALLVAQSEQSLL-IRLAAPTGKAAARLTESIAKAKTELATQVNADWLEG 251 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 IP ASTLHRLLG PG RHHA NPL LDVLVVDEASMIDLPMM+RL+ ALP AR+ Sbjct: 252 IPTQASTLHRLLGVIPGQPEFRHHAQNPLPLDVLVVDEASMIDLPMMARLLAALPPQARL 311 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 I LGD+DQLASVEAGAVLGDIC + G + +A L + TG + L D L Sbjct: 312 ILLGDKDQLASVEAGAVLGDICRFVAQGISQPQAECLQQRTGYDLQPYVQVTGHPLCDRL 371 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 CLL+KS+RF +DSGIG+LA A+N GD+ + V+ +D+ DI RL + ++ A Sbjct: 372 CLLRKSWRFAADSGIGKLAEAVNNGDEKTAQAVWTRDYRDI--RLHSDEQRLEMAVKLAA 429 Query: 413 AGYGRYLDLLQARAEPD---LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH 469 GY YL LL + ++QAFN+ +LLCAL +GP+G+ G+N+ I Q +Q + ++ Sbjct: 430 EGYHAYLALLDKPMSAEGAVALLQAFNQIRLLCALHDGPWGINGMNQAIGQRLQTQGRLQ 489 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPE 529 W+ GRPVMI ND LGL+NGDIGIA G+ RVWF +PDG PSRLP Sbjct: 490 MTAD--WFAGRPVMITENDYGLGLYNGDIGIAASDGERLRVWFVLPDGKAHGFLPSRLPA 547 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 H+T WAMTVHKSQGSEF H L+LP + P++TREL+YT +TRAR +L L+A +L+ Sbjct: 548 HDTAWAMTVHKSQGSEFTHTLLLLPPETNPLLTRELLYTGITRAREQLDLFATPEVLALM 607 Query: 590 IATRTERRSGLAALFSS 606 + +TER SGL + + Sbjct: 608 VRKQTERYSGLVTMLET 624 >UniRef50_Q6MDD6 Putative exodeoxyribonuclease V n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDD6_PARUW Length = 721 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 145/611 (23%), Positives = 251/611 (41%), Gaps = 83/611 (13%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAA---ALLSHDAGEGHVCLPLSRLENNEA 63 L + + D A + + + A +LS +G+GHVC P+ Sbjct: 183 LARDIFGVGFKTADT-VAQKMGISKDSEQRIGAGIEYVLSQLSGDGHVCYPVDEFLKEAE 241 Query: 64 SHPLL-ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 +H + A + + E EE ++ +Q + G + D +++ ++ E +AR Sbjct: 242 THLEVKADLIEKRLEGLQSEERIILAQLIHEGKK-------RDFIWIKPLFIAETGIARE 294 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVS---DEINWQKVAAAVALTRRISVISGGPGTGKTT 179 + + + ++ + + + QK A A A++ ++ +I+GGPGTGK+T Sbjct: 295 LKRLKNGVSTFRSINKEKAVEWVQAQLKIELAPNQKEAVAKAISTKLHIITGGPGTGKST 354 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 +L + +I LAAPTG+AA R++E + AST Sbjct: 355 ITNAILQITAILTQ----KILLAAPTGRAAKRMSEITKR-----------------KAST 393 Query: 240 LHRLLGAQPGS-QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 +H LL S + + NPL D++++DEASMID +M L+ ALPDH RVIF+GD Sbjct: 394 IHSLLEYDFKSTGGFKRNRENPLDCDLIIIDEASMIDTFLMYSLLKALPDHTRVIFVGDI 453 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 QL SV G VL D+ L S+ L++ Sbjct: 454 HQLPSVGPGNVLSDMITS-------------------------------LTISVTTLKEI 482 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R + S I A +N+G ++ DF IE + + + I Sbjct: 483 FRQAAGSHIITNAHRVNKGMFPSLYNGQNSDFFFIECQENEEVLNTI------------- 529 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 + L+ R + Q+L +++G G LN+ ++ + K ++ Sbjct: 530 VKLVSQRLPNRYGFNPNQDIQVLAPMKKGLIGTEHLNQSLQMILNPKEHALFRGGQKFQV 589 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 G VM RND +FNGDIG L+ + + + L E +A++V Sbjct: 590 GDKVMQIRNDYQKEVFNGDIGYILNIDSEEQQVLIQFEDKEVVYDYTDLDELILAYAISV 649 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TER 596 HK QGSE + + + ++ R L+YT +TR ++ + L ++ L+ A+ +R Sbjct: 650 HKFQGSECPCVVMPVHTSHFMLLHRNLLYTGITRGKKLVVLVGTKKALAIAVKKDDVQKR 709 Query: 597 RSGLAALFSSR 607 + L Sbjct: 710 YTSLQNALMEI 720 >UniRef50_B5EPU7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EPU7_ACIF5 Length = 650 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 241/644 (37%), Positives = 327/644 (50%), Gaps = 49/644 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLS---HDAGEGHVCLPLSRLE 59 + QL LRPLD+ FA + + A L + GEGH C+ L Sbjct: 9 MIDQLRAWTSAGWLRPLDLAFAQFLIRLDPQAPALLPLAGALLARLEGEGHTCIALEDFL 68 Query: 60 NN--------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP---------TPMIL 102 H +LAT + + W E L S+ V + TP++L Sbjct: 69 GAPERFLDWPAPGHAMLATALGDWPHAAQWTETLARSRCVQVTERNAPVPANGAETPLVL 128 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIEVD---EALLAQTLDKLFPVSDE----INWQK 155 RLYL R W +++ +A + D L L++LFP SDE + WQK Sbjct: 129 SAARLYLRRYWRDQQFIAEALRQRAQQRVADAANPEALRPWLEQLFPASDEPGDALPWQK 188 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 +A A+AL S+I+GGPGTGKT T A+ +A L+ + RI LAAPTGKAA R+ ES Sbjct: 189 IACALALRSHFSIITGGPGTGKTYTAARFMALLMATS-STPLRIVLAAPTGKAAVRIDES 247 Query: 216 LGKALRQLPLTDEQKKRIPE-----DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 L A+ LP + A TLH LLGA+P S+R RH A NPL LDVLVVDE Sbjct: 248 LQSAVGTLPQLSQIPDMTAAFARLRPARTLHSLLGARPDSRRFRHDAANPLELDVLVVDE 307 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 ASMI MM+ L+ ALP AR+I LGD+DQLASVEAGAVL ++ +G Sbjct: 308 ASMIHQEMMAALLRALPPAARLILLGDQDQLASVEAGAVLAEL--SLGSGKYDAETCHYM 365 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 + + P + L ++ LQ+S+RF ++ IG LA A++ G + Q Sbjct: 366 QASCGAAPRPGDNGPSPLAANIIRLQRSHRFNAE--IGALADAVHGGHPETAVRILQTAH 423 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL---------IIQAFNEYQLL 441 T I L + YGR D I+ + +++L Sbjct: 424 TGTLAWQPAPAIHRILELARPESAYGRVWQAAGQPPPKDRQQHSAWVKTILNDYAGFRIL 483 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CALR+GP+GV G+N IE ++Q++ + WY GRP ++ RND LGL NGDIGIA Sbjct: 484 CALRQGPWGVTGINRAIEDYLQRQGILQSRG--LWYAGRPTLVTRNDPNLGLSNGDIGIA 541 Query: 502 LDR-GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L + RV+F + +++ PSRL E+ WAMTVHK+QGSEF H LILP + +PV Sbjct: 542 LPDPDKRLRVYFPNSEEAPRAILPSRLNHTESAWAMTVHKAQGSEFAHTVLILPPEDSPV 601 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 ++REL+YTA+TRAR+ +L A L AI +T R SGL A Sbjct: 602 LSRELLYTAITRARKCFTLIAPRERLENAIQRQTRRMSGLHAAL 645 >UniRef50_Q2BKD7 Exodeoxyribonuclease V alpha chain n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKD7_9GAMM Length = 614 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 277/605 (45%), Positives = 359/605 (59%), Gaps = 13/605 (2%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEH--PAVTLAAALLSHDAGEGHVCLPLSRLENNEAS 64 L E+ +R +D QFA VA + P + AAL+S + G+VCLP RL ++ Sbjct: 11 LKGWAENGLIRNVDFQFAKLVAEQKPSQPQLIYLAALVSFELASGNVCLPKLRLL---SA 67 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVS--RGDEPTPMILCGDRLYLNRMWCNERTVARF 122 + + Q+W + + D T ++ +R YL R W E +A Sbjct: 68 KGYWDEEIESVINQQDWSSLKAEAFILGQPELDSNTLLLFDQERFYLKRYWEYESAIASQ 127 Query: 123 FNEVNHAIEVDEALLAQTLDKLFP-VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 ++VD ALL + L +LFP + EI+WQKVAAAVA+ +R SVISGGPGTGKTTTV Sbjct: 128 LINRAQTVDVDRALLKEGLAELFPMANQEIDWQKVAAAVAVQKRFSVISGGPGTGKTTTV 187 Query: 182 AKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 KLLA I A I+L APTGKAAARL ES+ A ++L L + + IPE A T Sbjct: 188 IKLLALYIAQAKAHSRNINIKLVAPTGKAAARLGESISSAKQRLSLDADIAELIPEQAGT 247 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 LHRLLG P S R +H NPLHLD+LV+DEASM+DLPMM RL+ ALP AR+I LGDRD Sbjct: 248 LHRLLGVIPNSIRFKHSQENPLHLDLLVLDEASMVDLPMMCRLLAALPAEARLILLGDRD 307 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QLASVEAG+VLGDIC++ + +E D L LL+KSY Sbjct: 308 QLASVEAGSVLGDICSWPGQLDYGPKQADQLFDLCQLPEVLPISEGTPFADCLALLRKSY 367 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 RF SGIGQLA A+N G+K AV V + ++D+++ L S + Y M+ E + + + L Sbjct: 368 RFDESSGIGQLARAVNLGNKQAVSCVLKAGYSDLQQHNL-SADSYELMISETVNFHAKLL 426 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 + P+ + + YQLLCALREGP+GV GLN+RI Q +Q + I WY G Sbjct: 427 RDIAQGLTPEQSLDYLSNYQLLCALREGPYGVVGLNDRIRQGLQSRGLIKEEG--LWYPG 484 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 RP+MI RND LGLFNGDIGIA G F G ++SV PSRLPEH+T +AMTVH Sbjct: 485 RPIMITRNDQNLGLFNGDIGIAYREPDGRIKVFFEQQGEVRSVLPSRLPEHQTVYAMTVH 544 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSG 599 KSQGSEF AL+LP +P++TREL+YT +TRAR L+L+ + IL+AA +TER G Sbjct: 545 KSQGSEFTRVALLLPPVDSPLMTRELLYTGITRARESLALFTTKGILTAATERKTERAGG 604 Query: 600 LAALF 604 LA Sbjct: 605 LALRL 609 >UniRef50_B8FB95 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FB95_DESAA Length = 589 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 238/604 (39%), Positives = 338/604 (55%), Gaps = 25/604 (4%) Query: 14 KQLRPLDVQFA---LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLAT 70 + +D QFA +AG P + AAAL+S EGH C+ L+ + L Sbjct: 2 IEFEAIDGQFAAFLQKLAGGSDPVLQSAAALVSLKTREGHTCVELNSGLDQ--DCLLSPD 59 Query: 71 CVSEIGELQNWEECLLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNE--VN 127 C W + L S V E P+IL RLYL+R + ++ A+ E V Sbjct: 60 CPEN---PAQWIDALANSPVVGAPGEYRPLILDQAGRLYLHRYYEDQALTAKKILEWSVP 116 Query: 128 HAIEVDEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 185 D+ LAQ LD+LF + E +WQK AAA A+ R+ SVISGGPGTGKTT A+++ Sbjct: 117 DPAYTDQDRLAQELDRLFTPLPNSETDWQKAAAATAVLRKFSVISGGPGTGKTTIAARII 176 Query: 186 AALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 L+ +ADG I + APTGKAAARL ESLGK L +L + + IP+ A T+HRL+G Sbjct: 177 RLLLSLADGRAPSIAITAPTGKAAARLLESLGKELSRLGVPPGMEDAIPKRAKTIHRLMG 236 Query: 246 AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 A+ S + H+A NP++ D+L+VDEASM++L +M+RL++ALPDH ++I LGD+DQLASV Sbjct: 237 ARFNSSQFIHNADNPINADILIVDEASMVELSLMARLLEALPDHGKLILLGDKDQLASVG 296 Query: 306 AGAVLGDICAY-ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 G+V+GDIC+ + F+ E AR L++ G +P+ G A + D + L K+YRF D Sbjct: 297 PGSVMGDICSGPGSQAFSPEWARVLAKAAGQAIPSENG--LAPIADGIVHLVKNYRFAKD 354 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 SGIG+LA + RGD + +I + + A+LEE L Sbjct: 355 SGIGELADCVVRGDAAGAAASLESGG-EIIYEPVNNPRTLPALLEEPL---REGFLPFIT 410 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 P ++AF +++LC +R+GP+G+ N +E + I + WYE RPV++ Sbjct: 411 AKNPAQALEAFGGFRVLCGVRQGPWGMNSANSLVEDIFARDGLILLR-NYPWYEKRPVVV 469 Query: 485 ARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 RND+ + LFNGD G+ +D + F ++ S LP H+T +AMTVHKSQGS Sbjct: 470 NRNDAEMNLFNGDHGVYMD----GKAAFPGLQEELRHYARSMLPAHDTAFAMTVHKSQGS 525 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 EF+ LILP + +PV+TREL+YTAVTR R RL + + A+ + T R SGL Sbjct: 526 EFESVLLILPGENSPVLTRELLYTAVTRTRSRLRIVGAMPSIKKAVLSPTRRPSGLQDAL 585 Query: 605 SSRE 608 E Sbjct: 586 WKTE 589 >UniRef50_D1R7Z3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7Z3_9CHLA Length = 727 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 149/609 (24%), Positives = 251/609 (41%), Gaps = 82/609 (13%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEA 63 L + + D+ A + D ++ A + LS A +G+VC P+ Sbjct: 184 LARDIFGIGFKTADL-IAQKLGIDSKSSIRTDAGVEFVLSELASDGNVCYPVDLFIEEAN 242 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + E+ + + EP ++L ++ E +AR Sbjct: 243 KVLEIEQEKISERISVLKEQGRVEHFKLIHAGEPLQF------IWLKPLFVAEVGIAREI 296 Query: 124 NEVNHAI----EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 + A +VD Q + + D QK A A AL +++ +I+GGPGTGK+T Sbjct: 297 QRLLSAPVVLRDVDVDKALQWIQAEHCI-DLAVNQKEAVAQALFQKMHIITGGPGTGKST 355 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 +L ++ +I LAAPTG+AA R++E GK AST Sbjct: 356 ITKAILGITEKLTS----KILLAAPTGRAAKRMSEITGK-----------------KAST 394 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +H LL + + + +PL D+L++DE+SMID +M L+ A+PD+ARVIF+GD + Sbjct: 395 IHSLLEYDFKGKGFKRNRSSPLVCDLLIIDESSMIDTFLMYSLLKAIPDNARVIFVGDIN 454 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL SV G VL D+ A S+ L + + Sbjct: 455 QLPSVGPGNVLQDLIASQVV-------------------------------SVTTLNEIF 483 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R + S I A INRG ++ + Q DF +E + + I + Sbjct: 484 RQAAGSFIITNAHRINRGMFPDIRNLSQSDFFFVEAQETEDVLKQI-------------V 530 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEG 479 L+ R ++ Q+L +++G G+ LN +++ + + + Sbjct: 531 ALVSQRLPKKYDFHPSDDIQVLAPMKKGNIGIDNLNAVLQETLNPNQTPLMRQGRKLMVN 590 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 VM RN+ + +FNGDIG +D + + + S L E +A+++H Sbjct: 591 DKVMQIRNNYSKEVFNGDIGRIVDIDHVEQQVVVKVEEREICYEFSELDEIVLAYAVSIH 650 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERR 597 K QGSE + + + ++ R L+YTAVTR ++ + L ++ LS A+ +R Sbjct: 651 KYQGSECPCVVIPVHTSHFKLLYRNLLYTAVTRGKKLVVLVGTKKALSIAVRNDEIKKRY 710 Query: 598 SGLAALFSS 606 +GL Sbjct: 711 TGLKQALVE 719 >UniRef50_A6W0A8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W0A8_MARMS Length = 639 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 266/613 (43%), Positives = 373/613 (60%), Gaps = 20/613 (3%) Query: 7 LLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L + LR +D Q+ +A ++H AV +A AL S G GH+C+ L + N Sbjct: 30 LSDWQARGVLRAIDCQWIEQLAHHAKEDHLAVHIAGALCSAYLGGGHICIDLESIWNRPP 89 Query: 64 SHPLLATCVS-----EIGELQNWEECLLASQAVSRGDE--PTPMILCGDRLYLNRMWCNE 116 L + +I +W L S+ VS + PM+L G RLYL R + E Sbjct: 90 EGIELEELRAVLASCKINNAADWCAVLQDSRLVSSAGKVNERPMVLAGTRLYLYRYFQYE 149 Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPV-SDEINWQKVAAAVALTRRISVISGGPGT 175 + V + A+ A L +LFP S+E++WQKVA A A + SVISGGPGT Sbjct: 150 QQVLNYLKGQFSVAPF--AVDAGLLMQLFPTQSEEVDWQKVAVANAASLPFSVISGGPGT 207 Query: 176 GKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GKTTTV +LLA L+ +A+G+ RI LAAPTGKAAARLTES+ KA LPL+D+ K I Sbjct: 208 GKTTTVTRLLALLVAQSLAEGKLLRIELAAPTGKAAARLTESISKAKADLPLSDDVKFAI 267 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 PE ASTLHRLLG++ G R +H+ NPLHLDVL++DE SM+DLPMM++LIDA+ + R+I Sbjct: 268 PEQASTLHRLLGSEFGRSRFKHNKDNPLHLDVLLLDEVSMVDLPMMAKLIDAMQPNGRLI 327 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFT-AERARQLSRLTGTHVPAGTGTEAASLRDSL 352 LGD+DQLASVEAG+VLGD+ + E A +LS+LTG H+ + A ++ +L Sbjct: 328 LLGDKDQLASVEAGSVLGDLSYGIEEVYFQPEWAERLSQLTGEHLAPFGNSSAPAISRAL 387 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 LL+ SYRF ++SGIG LA A+N G+ AV Q ++ D+E R + G+ A + Sbjct: 388 TLLRTSYRFDANSGIGHLAKAMNAGNSQAVLRCLQSNYADVEWRAPEEGQTK-ADIATLA 446 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHP 472 GY Y + ++ + + F+ YQ+L A+R+G FGV +N ++E + Q+ ++ Sbjct: 447 KGYDEYWEAVRQNLDIAKLYSVFSRYQILTAVRQGEFGVEKVNAQLEHYFYQRGRV--KD 504 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRLPEHE 531 WY G+ VM+ RND+ALGLFNGDIG+ + Q RVWF PDG+ + PSRL E E Sbjct: 505 PHVWYPGKAVMLTRNDAALGLFNGDIGLCMPDEFQRLRVWFMQPDGSFTGLLPSRLSEFE 564 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +AMTVHKSQGSEFD AL+LP +PV+T+EL+YT +TRA++ L+ ++ +A + Sbjct: 565 VVFAMTVHKSQGSEFDQVALLLPMAPSPVLTKELLYTGITRAKKMFILWGSSGLIRSATS 624 Query: 592 TRTERRSGLAALF 604 +R +R SGL + Sbjct: 625 SRIQRDSGLISEL 637 >UniRef50_A1S6V1 Exodeoxyribonuclease V n=1 Tax=Shewanella amazonensis SB2B RepID=A1S6V1_SHEAM Length = 631 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 260/621 (41%), Positives = 345/621 (55%), Gaps = 24/621 (3%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 L+ QL +L LD FAL +A D+ P + L L+S H CL LS L Sbjct: 13 ALKAQLKLWQSQGELSALDRHFALQMAELHSDDSPLMLLMCVLVSRQLSRQHPCLDLSAL 72 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 A + AV DE P+IL G RLYL R E Sbjct: 73 MLGNPMGTRQAQLRILADYPA-LLGAVANLDAVGSPDENKPLILEGKRLYLKRYQGFESR 131 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGPGTGK 177 VA N + A A L+ LFPV E I+WQK+A A A ++++VI+GGPGT Sbjct: 132 VAARLNAMAGTELSTHAHTAALLEALFPVGKEAIDWQKIAVATAAGKQLTVITGGPGT-- 189 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP-------LTDEQK 230 + L+ ++ IR+ APTGKAAARL+ES+ + ++L ++ + Sbjct: 190 -GKTTTVTKLLLLLSLSSSLNIRMVAPTGKAAARLSESIKASKQRLTQELNSPLISQDAI 248 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 +PEDASTLHRLLG QPG+ + RHH NPL LD+L+VDEASM+DLPMM RL+DALP HA Sbjct: 249 ASLPEDASTLHRLLGFQPGNHKFRHHRDNPLDLDLLLVDEASMVDLPMMDRLLDALPGHA 308 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 R+I LGD+DQLASVEAGAVL DIC A G+ + T +A L D Sbjct: 309 RLILLGDQDQLASVEAGAVLADICEGARQGYRYSAVQTARIEGLTGTKLAPRADAPGLGD 368 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 +LC L S+RF D+GIGQLA A+N GDK V V+Q+++ ++ + + A+++ Sbjct: 369 NLCRLLHSHRFAEDAGIGQLAMAVNEGDKEKVAAVWQKNYAELSWIPGDNSDGLAALVQL 428 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 A + Y YL ++ +AEP I+Q +NE+++LCA++ G +GV G+N I + + I Sbjct: 429 AKSAYSEYLQAMKQQAEPKTILQKYNEFRVLCAMKNGEYGVDGINRAITAALARAGLI-- 486 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGI---ALDRGQGTRVWFAMPDGNIKSVQPSRL 527 P +Y GRPVMI ND +LGLFNGDIGI Q F DG + V P+RL Sbjct: 487 EPSQEFYAGRPVMIQSNDYSLGLFNGDIGILLPVEGDNQRLMTHFIQSDGQVLKVLPARL 546 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTP----VVTRELVYTAVTRARRRLSLYADE 583 P HET +AMTVHKSQGSEF AL LP Q TP ++ REL+YTA+TRA+ + + E Sbjct: 547 PGHETCYAMTVHKSQGSEFASVALSLPPQPTPSQQSLIGRELIYTAITRAKSKFTCLGTE 606 Query: 584 RILSAAIATRTERRSGLAALF 604 + AA RTER SGLA Sbjct: 607 ALFEAATQRRTERASGLADRL 627 >UniRef50_Q5QUQ9 ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase n=1 Tax=Idiomarina loihiensis RepID=Q5QUQ9_IDILO Length = 647 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 228/644 (35%), Positives = 316/644 (49%), Gaps = 72/644 (11%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTV--AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59 L L E + +R +D+ F + AG+ V LAA SH+AG GH C+ + L+ Sbjct: 8 TLFDALREWRDAGWIRSIDLAFVEFLQQAGETRSEVLLAALCASHEAGRGHTCIDIKALQ 67 Query: 60 NNEASHPLLATCVSEIGEL-----------QNWEECLLASQAVS-RGDEPTPMILCGDRL 107 N S L + E L+ S V G P++L +L Sbjct: 68 NEPESVLNLPPENRYSPNCVNPSELFRQFGTDVEAALIQSHCVDVDGKGNQPLVLSDGKL 127 Query: 108 YLNRMWCNERTVA-RFFNEVNHAIEVDEALLAQTLDKLFPV-----SDEINWQKVAAAVA 161 YL R W E + ++ ++ LL TL KLF ++EINWQ+VA A Sbjct: 128 YLRRYWQYEAFIENDLQARMSDRPVTNDDLLKSTLAKLFDKPDGDKAEEINWQRVACANT 187 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGK 218 + R SVI+GGPGTGKT TV +LL AL R+ LAAPTGKAAARLTES+ Sbjct: 188 VRNRFSVITGGPGTGKTYTVVRLLTALQHQTLFLGLPPLRVSLAAPTGKAAARLTESIES 247 Query: 219 ALRQL------PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 L +L + I + TLHRLLG +P S+ +HHA NPL DV++VDEAS Sbjct: 248 ELNRLRGDAKLATLKDALDAIKPEGKTLHRLLGVKPNSRAFKHHADNPLRTDVVIVDEAS 307 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR- 331 MID+ MM+ L+ A P +AR++ +GD+DQLASVEAGAVLG++C A+ G Q + Sbjct: 308 MIDIEMMTALLKATPKNARLVLIGDKDQLASVEAGAVLGNLCEGADQGHYHTETAQWLQH 367 Query: 332 --LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 T + +KSYRF I LA AINR D A K ++ Sbjct: 368 VADTPVLPAELIDNNGEQRLQHVVKFRKSYRFH--GPIADLANAINRQDNAATKQELEKA 425 Query: 390 FTDIEKRLLQ-------SGEDYIAMLEEALAGYGRYLDLLQARAE--------------- 427 E + + A+++ L G ++ A+ Sbjct: 426 KVADEDYPVSLYEVSSLDDPAFEALVKRNLTTSGSLTLHVRNNADTNSNVTKTANAEDIN 485 Query: 428 --PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA 485 +Q + +Q+L ALREGP+GV +N+++ +I + WYEGRPVM+ Sbjct: 486 KLAQEALQNLSNFQILTALREGPWGVKAVNQKV-------GEILGVNANTWYEGRPVMVT 538 Query: 486 RNDSALGLFNGDIGIALDRGQGTRVWFAMPD-------GNIKSVQPSRLPEHETTWAMTV 538 +ND L L NGDIG+ + + A PD ++ V PSRL ET +AMTV Sbjct: 539 KNDYGLKLNNGDIGLTFKDPEHGHLRVAFPDQTNKSENKGVRWVLPSRLTHIETVYAMTV 598 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 HKSQGSEF H ++LP +PV+++EL+YT +TRA+ RLSL Sbjct: 599 HKSQGSEFKHTVMVLPDHDSPVLSKELLYTGITRAKERLSLVGS 642 >UniRef50_A8ZX10 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX10_DESOH Length = 609 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 220/601 (36%), Positives = 314/601 (52%), Gaps = 20/601 (3%) Query: 19 LDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEI 75 LD +F + + + LAAAL GHVC L N + + Sbjct: 17 LDRRFGELLTALDPGGGKELFLAAALTLWHTRRGHVCFDL----NRADAFLTDGLDGVSL 72 Query: 76 GELQNWEECLLASQAVSR-GDEPTPMILCGD-RLYLNRMWCNERTVARFFNEVNHAI-EV 132 + + W + L S V+R G +P P++L G+ RLYL+R W + +A F I +V Sbjct: 73 PDGRQWADILSRSAVVARPGGDPAPLVLDGEGRLYLHRYWAYQEQLADFIRSRAGIIRKV 132 Query: 133 DEALLAQTLDKLFPVSDE---INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 D L + L + FP + Q+VAA ALT SVI+GGPGTGKT T A++LA L Sbjct: 133 DAHRLKEGLTRWFPGQGPGNGPDMQRVAAVSALTHDFSVITGGPGTGKTLTAARILALLA 192 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG 249 + A+ L APTGKAAARL E++ LR + R+ A T+HRLLGA PG Sbjct: 193 EQAENRPLAAVLTAPTGKAAARLGEAM-STLRGAVPGPASENRLEVRACTIHRLLGALPG 251 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 + RHH NP+ DV+VVDEASM D+ +M++++DALPDH R+I +GD+DQLASV AG+V Sbjct: 252 TTVFRHHRHNPIAADVVVVDEASMADVALMAKMVDALPDHCRLILVGDKDQLASVAAGSV 311 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA--ASLRDSLCLLQKSYRFGSDSGI 367 DIC A + Q G A A L ++ L+ YRF G+ Sbjct: 312 FADICGAAGRNRFSADFLQALEAAGVLTGGMKAFPAGTARLAGNVVHLETVYRFEHRGGM 371 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 ++ + G + E++ L + + + D L A Sbjct: 372 EMVSRLVREGAAGEIVEALATPGHQDVTWTAPDQEEWRERLARTVTAWVK--DCLSVSAN 429 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 P++++ +++LCALREGP G LN +E +Q+ + WY GRPVM+ +N Sbjct: 430 PEMVLDRLGSFRVLCALREGPAGALALNRSVEHSLQRAGVV--ASGRLWYAGRPVMVLKN 487 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 D +L LFNGD+GI L G V+F G ++ P R+PEHET +AMTVHK QGSEF+ Sbjct: 488 DYSLELFNGDVGITLWDGDRLSVFFKDDRGGVRKFHPGRIPEHETVYAMTVHKGQGSEFE 547 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSR 607 ++P + PV+TRELVYTA+TRAR + + + I+ AA++ RRSGL ++ Sbjct: 548 KVVFVMPDRDGPVLTRELVYTALTRARSHIEIIGKKDIIEAAVSRSVSRRSGLVEAINND 607 Query: 608 E 608 + Sbjct: 608 Q 608 >UniRef50_A8ZLV4 Helicase, RecD/TraA family n=18 Tax=Cyanobacteria RepID=A8ZLV4_ACAM1 Length = 753 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 148/614 (24%), Positives = 244/614 (39%), Gaps = 80/614 (13%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVT---LAAALLSHDAGEGHVCLPLSRLEN 60 +L V D A ++ H +LS A EGH LP L + Sbjct: 192 PYRLATDVYGIGFVTADE-IARSLGISPHSEYRYRSGLLHVLSESAEEGHCYLPQPELID 250 Query: 61 NEASHPLLATCVSEIGELQNWEECLL--ASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 L + +++ ++ A V R L Y + E Sbjct: 251 RAVKRLALPDYQPKPDQVEYLIHAMISDAELIVERLTHEGSTKL---LCYAPPFFQAEFH 307 Query: 119 VARFFNEV-NHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGT 175 ++R ++ ++ VD + LD+ +D Q+ A +A ++R+ +++GGPGT Sbjct: 308 LSRRVLQLLASSLVVDNERVRAWLDRFMAQTDVSLSKQQQQAVEMAASQRVVILTGGPGT 367 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKT T ++A + I LA+PTG+AA RL+E G Sbjct: 368 GKTFTTRTIVA----LWKAMGKDIVLASPTGRAAQRLSEVTGH----------------- 406 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 +A T+HRLL P + + + ++ NP+ D +V+DEASM+DL + + LI A+ +A+++ + Sbjct: 407 EAKTIHRLLEFDPKTMKFQRNSDNPIPADAVVIDEASMLDLFLANSLIKAIDTNAQLLLV 466 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL SV G VL D+ + L Sbjct: 467 GDTDQLPSVGPGNVLLDLITSGRIP-------------------------------IIEL 495 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 + +R S I + A IN+G +++V TD E+ + ++E + Sbjct: 496 TEVFRQAQASHIIRNAHRINQGQFPNLESVSPSPKTDCLWLGAPEPENGVQAIQELIND- 554 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHP 472 P+L Q + Q+LC + G G LN+ ++ + + Sbjct: 555 ----------LLPELGFQPARDVQVLCPMTRGEVGTRKLNQVLQALINPPCPDKPELTRG 604 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHET 532 G V+ ND +FNGD+G+ D S + L E Sbjct: 605 GLILRVGDRVLQQVNDYNREVFNGDMGVIEDINLEEIEVTVHYAERSVSYDLADLNEIGL 664 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 WA+T+HKSQGSE+ L L Q +++R L+YT +TRA++ L + +S AI Sbjct: 665 AWAVTIHKSQGSEYPVVILPLYMQHYIMLSRNLLYTGLTRAKKLAILVGPKNAISMAIRQ 724 Query: 593 --RTERRSGLAALF 604 +R + L Sbjct: 725 IKDRQRYTLLERRL 738 >UniRef50_Q1QYD2 DNA helicase/exodeoxyribonuclease V, alpha subunit n=3 Tax=cellular organisms RepID=Q1QYD2_CHRSD Length = 655 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 256/642 (39%), Positives = 343/642 (53%), Gaps = 57/642 (8%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLSRL 58 L + L LRPLD FA +A + A V LAAAL SH G GHVCL L R Sbjct: 20 SLFESLAWWEALGWLRPLDAHFARFLAEHDARAPVEVLLAAALASHQLGRGHVCLTLPRA 79 Query: 59 ENNEASHPLLATCVSEIG--------------ELQNWEECLLASQAVSRGDEPT-PMILC 103 L + E W L S V+ T P++L Sbjct: 80 LAAPRDVLSLPPLEEDAPHESVPLPDDFLRGLESATWAARLAESPLVASPGPGTTPLVLV 139 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF----PVSDEINWQKVAAA 159 G+RLYL R W E+ VA EA LA L +LF D +WQKVA Sbjct: 140 GERLYLRRYWRAEQAVATHLGARLGRPLPVEASLAAPLARLFSANGASEDAPDWQKVACT 199 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------------GERCRIRLAAP 204 +AL R+++IS + RI+LAAP Sbjct: 200 LALRNRLTIIS----------GGPGTGKTTTVTRLLALLQTQALAASRGERALRIQLAAP 249 Query: 205 TGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLD 264 TGKAAARL+ES+ A+ L + + +P +A TLHRLLGA+P +++ RHHAG PL LD Sbjct: 250 TGKAAARLSESIAGAMSGLDVEADVAATLPREALTLHRLLGARPDTRQFRHHAGQPLSLD 309 Query: 265 VLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA-YANAGFTA 323 +LVVDEASM+DL +M+ L++ALPD AR+I LGD+DQLASVEAG+VLGD+CA + G++ Sbjct: 310 LLVVDEASMVDLELMAALLEALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSP 369 Query: 324 ERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVK 383 LS+L T + + L D + +L+KS+RF + SGIG LAAA N GD A + Sbjct: 370 AACEVLSQLADTDMTP--DPACSPLADHVVMLRKSFRFDAHSGIGALAAATNDGDVAAFR 427 Query: 384 TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCA 443 +Q +TDI+ + + + ALAGY + ++ A P ++ N++Q+LCA Sbjct: 428 QAWQAQYTDIQWLASSNAQREVE--RAALAGYRDFYRRVRDGASPADVLARLNDFQVLCA 485 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 L+ GP+GV GLN RI + ++ I WY GRPVM+ RND LGL+NGDIGIAL Sbjct: 486 LKRGPWGVEGLNARIAAGLWREGWIEDPQG--WYAGRPVMVTRNDPQLGLYNGDIGIALP 543 Query: 504 RGQGTRVWFAMP--DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 + R G +++V PSRL ET +AMTVHKSQGSEF H +LP + P++ Sbjct: 544 DAEAGRRLRVFFATAGGVRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPIL 603 Query: 562 TRELVYTAVTRARRRLSLY-ADERILSAAIATRTERRSGLAA 602 TRELVYT +TRAR+RL+L ++ +A+ R R SG A Sbjct: 604 TRELVYTGITRARQRLTLAGGGASVVESALTRRVVRDSGFAE 645 >UniRef50_C0QI06 RecD2 n=2 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI06_DESAH Length = 665 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 263/647 (40%), Positives = 348/647 (53%), Gaps = 49/647 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLSRLE 59 + + + LRPLD F + + E A V L AAL+SH GH+CL L L Sbjct: 22 VLQLVETWTTLGWLRPLDRAFVVFLHHQEKDAGFLVLLGAALVSHQLARGHICLDLGPLL 81 Query: 60 NN------------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRL 107 + A L + + WE+ L S V TP+ L RL Sbjct: 82 ADPDGVLALPPEGMTAKETLTPSRLLSGVTQDLWEQHLDCSPLVGGDTGNTPLALVSGRL 141 Query: 108 YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF--------PVSDEINWQKVAAA 159 YL R W R VA ++ L Q LD +F EI+WQ VAAA Sbjct: 142 YLRRYWDCTRQVAEQIKRLSAKKIDVPHDLEQRLDGIFGAMRTPEENEKTEIHWQSVAAA 201 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLG 217 +A T +S+ISGGPGTGKTTTV +LL L +A G RI LAAPTGKAAARLTES+ Sbjct: 202 IAATNALSIISGGPGTGKTTTVVQLLGILQTLAMEAGRGLRISLAAPTGKAAARLTESIA 261 Query: 218 KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 KA+ +L L ++++P+ STLHRLLG++P S+ H NPLH+D+LVVDEASMIDL Sbjct: 262 KAVDRLSL--PVQEKMPKSVSTLHRLLGSRPDSRNFIHDQNNPLHVDLLVVDEASMIDLE 319 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 MM+ L+ A+P AR+I LGD+DQLASVEAG+VLGD+C + Sbjct: 320 MMNALLQAIPPGARLILLGDKDQLASVEAGSVLGDLCESPATACFLPATVAFLQQATGFD 379 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 + + + +L+KS+RFG SGIG LA A+N+GDK V V++Q F+DI + Sbjct: 380 LSEFSGPGREIDQQIVVLRKSHRFGEHSGIGALAGAVNQGDKNGVAEVWRQGFSDIFQVR 439 Query: 398 LQSGEDYIAML-----------EEALAGYGRYLDLLQARAEP--------DLIIQAFNEY 438 + + D +E GY +L+ L ++ FN++ Sbjct: 440 VPTCHDNRFHRLVLDGHSTTTGKEGPQGYRVFLETLSQGPGAFGSETDWLKAVLHGFNQF 499 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 Q+L LR G +GV LN I + + I WY GRPV++ RND +LGL NGD+ Sbjct: 500 QVLTPLRRGEWGVEALNLAIADVLYRSDLIDATQG--WYPGRPVLVTRNDYSLGLMNGDM 557 Query: 499 GIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 GI +G RV F M DG++K + PSRL ET +AMTVHKSQGSEFDH A++LP T Sbjct: 558 GIVAPTTRGMRVVFPMGDGSLKLLLPSRLSNVETVYAMTVHKSQGSEFDHTAMVLPGTVT 617 Query: 559 PVVTRELVYTAVTRARRRLSLYADERI-LSAAIATRTERRSGLAALF 604 PV+TRELVYT +TRAR +L + L+AA+ RT+R SGL L Sbjct: 618 PVITRELVYTGITRARSWFTLVCPHEVILAAAVEQRTQRASGLGELI 664 >UniRef50_A0KQ57 Exodeoxyribonuclease V, alpha subunit n=10 Tax=Gammaproteobacteria RepID=A0KQ57_AERHH Length = 684 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 301/684 (44%), Positives = 387/684 (56%), Gaps = 85/684 (12%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDE-HPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 + ++L ++R LD+QFA VA P + L AAL + G GHVCLPL L ++ Sbjct: 6 MIERLKALALAGRIRQLDLQFARLVADLGGSPELVLGAALACFELGRGHVCLPLEMLTHS 65 Query: 62 EASHPLLA----------TCVSEIGELQNWEECLLASQAVSRGDEPT-----PMILCGDR 106 L ++++ + W S V + P+ L R Sbjct: 66 GNEKGSLRPFGLDPDQSRDLLADLADPARWPALFAESPLVGSEQDEGLAPRWPLRLWHGR 125 Query: 107 LYLNRMW---------------CNER-TVARFFNEVNH---------------------- 128 LYL R E +A + + Sbjct: 126 LYLTRYHDFELGVARHLRALSERAEWPEIAPALSRLFARDYGLVFAALLKARLAPDFSAR 185 Query: 129 -----------AIEVDEALLA------------QTLDKLFPVSDEINWQKVAAAVALTRR 165 EVD + LD L P + N QK+AAA A R Sbjct: 186 HFTLKYLDLVFPNEVDWLAIEGLLASAQAASDLSKLDALVPEALCCNGQKLAAATAAARP 245 Query: 166 ISVISGGPGTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 +VISGGPGTGKTTTVAKLLA L++ + G+ IRL APTGKAAARLTES+G AL+ L Sbjct: 246 FAVISGGPGTGKTTTVAKLLAILVETGLQAGKAPAIRLVAPTGKAAARLTESIGSALQAL 305 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 L E + IP +A TLHRLLG PG + RHHAGNPLHLD+LVVDEASM+DLPMM+RL+ Sbjct: 306 DLPPEWVEAIPTEAGTLHRLLGVIPGRSQFRHHAGNPLHLDLLVVDEASMVDLPMMARLL 365 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 DALP HAR+I LGD+DQLASVEAGAVLGDIC++ G + +A LSR TG + Sbjct: 366 DALPSHARLILLGDKDQLASVEAGAVLGDICSFIEQGISPAQADWLSRQTGYRLQ--GSP 423 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 A++RDSLCLL KS+RF SGIGQLA A N GD TAV++V+ F DI +GE Sbjct: 424 AGATVRDSLCLLAKSWRFDQHSGIGQLARACNSGDATAVESVWGAGFADISLHPW-AGEA 482 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 Y A++ + +AGYG YL +A P + +AFN +Q+LCALR+GPFGV GLNER+E + Sbjct: 483 YDALIAQGVAGYGSYLKAARAGEAPAAVFKAFNSFQILCALRDGPFGVLGLNERLELALS 542 Query: 464 QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIKSV 522 + I WY GRPVM+ RND +GL+NGD+G+ L G +VWF PDG ++++ Sbjct: 543 RAGLIACDGD--WYAGRPVMVVRNDHGVGLYNGDMGLCLPDETGRLKVWFEQPDGTLRAL 600 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 PSRLP HET +AMT+HKSQGSEF H L+LP +P++TRELVYT +TRA+ RL LY D Sbjct: 601 LPSRLPPHETVYAMTIHKSQGSEFAHTVLVLPDSPSPLLTRELVYTGITRAKARLDLYGD 660 Query: 583 ERILSAAIATRTERRSGLAALFSS 606 +L+ A+ +TER SGLA Sbjct: 661 RALLAQAVRKKTERYSGLAERLGE 684 >UniRef50_C7RK95 Helicase, RecD/TraA family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK95_9PROT Length = 752 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 142/613 (23%), Positives = 246/613 (40%), Gaps = 84/613 (13%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 + +L + + D + + +A D + L+ + +GH LP + L Sbjct: 186 ENPYRLAQDIRGIGFLSADTIAQKVGIAKDSPLRAQAGISYALTEASAQGHCGLPYAELV 245 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + + E Q + +L V ++L ++ E+++ Sbjct: 246 PLAVKLLDIPESIIETAIAQEIADEVLVPDTVEGQPS----------VFLAPLYYAEQSL 295 Query: 120 ARFFNEVNHA----IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 A + A + +++ + + + QK A +AL+ ++ VI+GGPG Sbjct: 296 AAQVRRLTTAASTLPDFAADKAIPWVEQKLAI-ELADSQKEAIRLALSAKLLVITGGPGV 354 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTT V +L + + + L APTG+AA RL ES G Sbjct: 355 GKTTLVNSILT----IMSVKGVKPLLCAPTGRAAKRLGESTG-----------------L 393 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 +A T+HRLL P + + + +A NPL DVL+ DE SMID+P+ ++L+ A+ +I + Sbjct: 394 EAKTIHRLLEVNPLNGQFKRNADNPLECDVLIADECSMIDVPLANQLLKAVATSTVMILV 453 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL SV G L D+ + + L Sbjct: 454 GDVDQLPSVGPGQFLADLIDSGSVP-------------------------------VIRL 482 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 + +R + S I + A INRG ++ ++ + Y+ EE Sbjct: 483 TEVFRQAASSRIVRSAHQINRGVFPSLPGKG------------EASDFYLVAAEEPEVIA 530 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI-HRHPHS 474 +DL+Q R + + Q+LC + G G G+N+ ++ + + + Sbjct: 531 QTVVDLVQTRLPRKFHVDPVRDIQVLCPMNRGITGARGINQALQAALNPPGEHSVDKFGN 590 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 R+ G VM N+ +FNGDIG + DG + + L E + Sbjct: 591 RFSVGDKVMQIENNYDRDVFNGDIGFVTGIDRDDEELAVTFDGRVVTYPFGELDELVLCY 650 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI--AT 592 A T+HK+QGSE+ + + +Q ++ R L+YT +TR + + L +R L+ A+ Sbjct: 651 ATTIHKAQGSEYPVVVMPISTQHYMMLKRNLIYTGITRGKTLVVLVGQKRALAMAVKGKE 710 Query: 593 RTERRSGLAALFS 605 R S L S Sbjct: 711 VERRWSKLKERLS 723 >UniRef50_A4B916 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Reinekea blandensis MED297 RepID=A4B916_9GAMM Length = 583 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 214/598 (35%), Positives = 302/598 (50%), Gaps = 31/598 (5%) Query: 16 LRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 PLD A + + + AAL S +GH CL + Sbjct: 8 FHPLDSALADRICQWHHSDDELLWHTAALTSFALQQGHTCLWPEQALTEAPYSTYAELGG 67 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE-VNHAIE 131 + + W L A D +P+IL +RLYL R W E +ARF A+ Sbjct: 68 IALPSAETWLAHLAAFDL--TPDSESPLILENERLYLRRYWQFETEIARFLKRSTTGALP 125 Query: 132 VDEALLA---QTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 + EA + LD+ FP+ D NWQ+ AA L VI GGPGTGKT TV ++LA Sbjct: 126 LTEAQVRDVRNKLDQYFPLEDNRFNWQRCAAVNCLLDPTHVIIGGPGTGKTYTVTRILAL 185 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 L ++D IRLAAPTGKAA RL E++ A R+L L IP+ A TLHRLLG Sbjct: 186 LSAVSDTPPI-IRLAAPTGKAAGRLAEAINDAKRELNLDLIDAGAIPDSAQTLHRLLGVI 244 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 P + RHH +P+ D+L++DE SM+DLPMM+RL A+ H RVI LGD DQL SV AG Sbjct: 245 PNQLQFRHHQEHPIEADILLIDEVSMVDLPMMARLTRAIAPHTRVILLGDADQLPSVAAG 304 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 +VL D+ + G++ R QL+ L P T + RD + L+ S RF SGI Sbjct: 305 SVLADMVDKPHTGYSQARVSQLANLD----PKQTLNSQPNARDFVTELKYSRRFSDTSGI 360 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 GQLA ++ GD + VF Q + D++ I + ++ L+ + + Sbjct: 361 GQLAKSVIAGDASQTVRVFSQ-YEDVQWVRDIDPSRLIHQWVD------QHYALIAQQED 413 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 ++ LCA REG G +NERI + ++R ++ G+P+M+ +N Sbjct: 414 LVKAFAQLKTFRALCATREGDQGTVHINERIVSLLNRQR-------QTFFHGQPIMVTQN 466 Query: 488 DSALGLFNGDIGIALDRGQGTRV-WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 L LFNGDIG+ G + WF DG+ + V RLP ET +AMT+HK+QGSEF Sbjct: 467 HYGLKLFNGDIGLVWPDEHGQLLAWFEQEDGH-RPVALGRLPGVETVYAMTIHKTQGSEF 525 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +H AL+LP + ++TREL+YT +TRA+ R +++ + + R +GL Sbjct: 526 NHVALVLPDREHALITRELLYTGITRAKERCDVFSPSETWNRGVDRAVTRWAGLGLKL 583 >UniRef50_Q2SQD7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SQD7_HAHCH Length = 645 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 235/623 (37%), Positives = 331/623 (53%), Gaps = 25/623 (4%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAG-------DEHPAVTLAAALLSHDAGEGHVCL 53 M + + A + LRPLD A ++ + L AL S+ GH CL Sbjct: 1 MSIAHLIDAARQSNLLRPLDYYLGQQFAELATAATEEQRELLALTVALTSNALANGHTCL 60 Query: 54 PLSRLENNEASHPLLATCVSE--IGELQNWEECLLASQA------VSRGDEPTPMILCG- 104 LS+ + L+ W E LLAS + +P +L Sbjct: 61 DLSQYAGRSLWPDSAEEDMRAFIAPSLKLWREALLASGLTQADSDIGDAGPVSPCVLDDR 120 Query: 105 DRLYLNRMWCNERTVARF-FNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALT 163 + YL R + ER +A + H + Q L + FP + Q +AAAVA Sbjct: 121 NCFYLARYFEYERQLAGLLQQRIAHHAAFPPEQVRQALLRFFPSVAAEDRQAIAAAVACR 180 Query: 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 + + I GGPGTGKTTTVAKLL L ++++ RI LAAPTGKAAARL ES+ A QL Sbjct: 181 QGFTAIVGGPGTGKTTTVAKLLGMLGELSE-PPLRIALAAPTGKAAARLMESIRNAKLQL 239 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 +RIP+ A TLHRLL + + HHAG+PL +D+L++DE SM+DL MM R++ Sbjct: 240 GERLSHPERIPDTAYTLHRLLKVRGDGKGFVHHAGHPLPVDLLLIDEVSMVDLAMMLRIV 299 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 +ALP HAR++ LGD +QLASVEAG+V+GDIC+ + R G P Sbjct: 300 EALPPHARLMLLGDSEQLASVEAGSVIGDICSQRATAGVSPDMASYLRKIGLTPPYPEEE 359 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 +AA + D + L+ S+RF + SGIG+LA AIN GD A VF+Q + Sbjct: 360 KAAPVADCVIRLEVSHRFHARSGIGRLAQAINAGDSEAALQVFRQPEFEDADWENLPPSQ 419 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 +++++ A + + + A N +++LCA++EG GV +N+ +E +Q Sbjct: 420 LQSIIQQTAA---NAYEPCFKADSVETALDAMNRFRILCAVKEGHGGVQEINQWVEAALQ 476 Query: 464 QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR--GQGTRVWFAMPDGNIKS 521 +K R+ Y GRPVM+ RND +LGLFNGD+G+ R WF DG ++S Sbjct: 477 RKGLAPRYQLH--YHGRPVMVTRNDYSLGLFNGDVGLIWRDPASGQLRAWFPDADGPLRS 534 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 + RLP HET +AMT+HKSQGSEFDH + LP PV+TREL+YT VTRA++R+S++ Sbjct: 535 IPLYRLPAHETVYAMTIHKSQGSEFDHCVVALPETDQPVLTRELLYTGVTRAKKRISVWG 594 Query: 582 DERILSAAIATRTERRSGLAALF 604 +L +I T+R SGLA Sbjct: 595 PRHLLIKSIKRPTQRMSGLARRI 617 >UniRef50_C0N790 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N790_9GAMM Length = 578 Score = 458 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 231/604 (38%), Positives = 333/604 (55%), Gaps = 35/604 (5%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDE---HPAVTLAAALLSHDAGEGHVCLPLSRLENNEAS 64 ++ + + + L QFA + E V+L A LL+ +GHVCL L+ E Sbjct: 5 IKLLHQQGVSGLACQFATFIDRKEAGKSTVVSLTAGLLTEAMSQGHVCLNLAN--PPEII 62 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVARFF 123 H L A + + W++ L +++V + + TP+IL LYL R W +E+ VA Sbjct: 63 HQLNAFLPNNATD---WQQQLREAKSVGKPGDYTPLILTESGLLYLYRFWRDEQDVAHAI 119 Query: 124 NEVNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + HA++ V+ L Q L ++WQKVA A+AL+R ++VISGGPGTGKTT V Sbjct: 120 MQRRHAVDNVNLEQLQQDLANWHNPIAGVDWQKVAVAMALSRHLAVISGGPGTGKTTIVL 179 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 K+L L +D RI LAAPTGKAAARL +S+ ++ + TLHR Sbjct: 180 KILQCLQNQSDS--LRIGLAAPTGKAAARLQQSI-------------SQQQTAEVKTLHR 224 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG + + R++A PL LDVL++DEASMID+ +M++L+ A+P AR+I LGD QLA Sbjct: 225 LLGITEHNDQGRYNAERPLPLDVLIIDEASMIDISLMAKLMRAMPAKARLILLGDSQQLA 284 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SVE+GAVL ++ FTA+ Q L E A L DS LQ SYRF Sbjct: 285 SVESGAVLANLSESQQGTFTADFVAQFPALGLED--NTHQNETALLIDSFVRLQHSYRFD 342 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 +S +GQLA +N D + + I R D ++L GY +++ + Sbjct: 343 KESLVGQLADHVNAADAETTLQLLNEQTEAIWFRT-----DERSLLNVLTTGYNAFINAV 397 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 + R P IIQAF+++++L AL++GP V +N + +F+ QK + +Y GRP+ Sbjct: 398 ENRLPPQDIIQAFDQFRVLAALKQGPQSVMSVNRLMSRFLAQKG---WRTNQTFYSGRPI 454 Query: 483 MIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 MI +ND LFNGDIGI L G ++ V +RLP HET +AMTVHKSQ Sbjct: 455 MITQNDYRQQLFNGDIGIILRDADGHLKACFYFGEALRWVSLNRLPAHETVFAMTVHKSQ 514 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 GSEFD +++LP + +P+++REL+YTA+TRAR+ L++ A E +L I R +R SGL Sbjct: 515 GSEFDAVSILLPDEISPILSRELLYTAITRARKTLTILAVENVLKHTIHRRHQRESGLNQ 574 Query: 603 LFSS 606 Sbjct: 575 QLEK 578 >UniRef50_A4VRQ4 Exodeoxyribonuclease V alpha chain n=2 Tax=Proteobacteria RepID=A4VRQ4_PSEU5 Length = 616 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 269/597 (45%), Positives = 357/597 (59%), Gaps = 17/597 (2%) Query: 10 AVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLA 69 + L V + AV LAA L G VCLPL RL Sbjct: 5 DLPLGPLERAFVASLQRLEPQAPEAVLLAATLCCEALAAGDVCLPLERLAGRRP----WP 60 Query: 70 TCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA-RFFNEVNH 128 + L W L AS V D+ P+ L GDRLYL R E+ +A + Sbjct: 61 DVDLSMPALPVWRAQLEASTLVGTPDDYAPLTLVGDRLYLARYQAYEQQLAEQLLARTGD 120 Query: 129 AIEVDEALLAQTLDKLFPVSD-EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 A EVDEA LA++L +LF + +WQ++AAA A+ RR++VISGGPGTGKTTTV +LLAA Sbjct: 121 APEVDEARLAESLARLFAFNQQRPDWQRLAAAQAVRRRLAVISGGPGTGKTTTVVRLLAA 180 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 L++ GER I LAAPTGKAAAR+ E++ A +LP++D K+ +P++A TLHRLLG++ Sbjct: 181 LLEQPGGERLAIGLAAPTGKAAARMAEAIRNAKAELPVSDAVKEALPDEARTLHRLLGSR 240 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 S R+RH A NPL LDVLVVDEASM+DL +M++L+ ALP AR+I LGD+DQLA+VEAG Sbjct: 241 GDSPRVRHDAANPLALDVLVVDEASMVDLALMAKLVAALPPKARLILLGDKDQLAAVEAG 300 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 AV ++C GF A A +L R+TG VP T L D++ LL S+RF DSGI Sbjct: 301 AVFAELCE--GRGFDAGAASELERITGQPVPVETPRS--RLGDAVVLLTHSHRFAGDSGI 356 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 G+LA IN GD + Q+ D+ S A++E GYG YL + + Sbjct: 357 GELARRINAGDAKGTVALLQEGRADLAWNATPSPT---ALIERLEQGYGGYLQAARQ-GD 412 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 P +AFN ++ L A REGPFGV G+NE +E +++ + RWY GR VM+ +N Sbjct: 413 PGAAFEAFNGFRALTAQREGPFGVTGINEALETRFRRRLGVPARE--RWYPGRAVMVRQN 470 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 D ALGLFNGD+G+ L QG RV+F DG + P+RLP H++ +AMTVHKSQGSEF Sbjct: 471 DYALGLFNGDVGLCLKTEQGLRVFFEGDDG-YRGFAPARLPSHDSAFAMTVHKSQGSEFA 529 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 L LP Q +P++TR L YT +TRA+RR+ ++A L+ A++TR ER +GLA Sbjct: 530 EVLLALPDQPSPLLTRALFYTGITRAKRRVEIWALPARLAEAVSTRAERAAGLAERL 586 >UniRef50_Q3B2W0 Helicase RecD/TraA n=19 Tax=Bacteria RepID=Q3B2W0_PELLD Length = 739 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 148/615 (24%), Positives = 245/615 (39%), Gaps = 88/615 (14%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLA-AALLSHDAGEGHVCLPLSRLENN 61 +L + R D + ++ +A D + +L + +GH +P L + Sbjct: 200 PYRLSRDIAGIGFRTADAIAQSIGIAADSPLRARAGMSWVLQELSSKGHCRVPEPMLLDA 259 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + V EE L A R + YL +W E+ V Sbjct: 260 ARQLLQIPDSV--------LEEALQVECAAGRI--VAVLEGEERYCYLEYLWKAEQGVVE 309 Query: 122 FFNEVNH------AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 + ++V+ ++ + Q+ A +AL+ ++ +I+GGPG Sbjct: 310 GIRRIAGGKLPWGRLDVERSVTEAEER---SRLELSVSQREAVRLALSNKLLIITGGPGV 366 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTT ++ L+ + + ++ L APTG+AA RL+E+ G+ Sbjct: 367 GKTT----IIRTLLSIPEVFGLKVLLTAPTGRAAKRLSEATGR----------------- 405 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 + T+HRLL P + + A NPL D+++VDEASMID+ +M+RL+ A+P +A +I Sbjct: 406 EGRTIHRLLEFDPATFDFKRSAHNPLEADLVIVDEASMIDVVLMNRLLPAIPKNAALILA 465 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL V GAVL D+ + + L Sbjct: 466 GDVDQLPPVGPGAVLSDLISSGTV-------------------------------RVVRL 494 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 + +R + S I Q A +NRG+ + D S +D L Sbjct: 495 TEIFRQAATSLIIQNAHRVNRGE--GLLRHEGPGLGDFYFVESSSSDDIRRKL------- 545 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR-KIHRHPHS 474 + ++ R + ++ Q+L + GP G LN +++ + K Sbjct: 546 ---VQIVAERIPERFGLDPLDDIQVLTPMNRGPLGAESLNVLLQERLNGGGGKRIERFGV 602 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 + G V+ N+ +FNGDIGI + DG Q L E W Sbjct: 603 AYGRGDKVIQTVNNYEKEVFNGDIGIISAIDHEEGELQVLFDGREVRYQTGELDEMAPAW 662 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT-- 592 A+T+HKSQGSE+ + L P++ R L+YTA+TR R+ + + +E+ L A+ Sbjct: 663 AITIHKSQGSEYPAVVIPLSMLHYPMLERNLIYTALTRGRKLVMVIGEEKALRLAVGKCS 722 Query: 593 RTERRSGLAALFSSR 607 R +GLA Sbjct: 723 SKGRLTGLADALKGH 737 >UniRef50_Q1LST7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LST7_BAUCH Length = 619 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 241/620 (38%), Positives = 362/620 (58%), Gaps = 20/620 (3%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHP--AVTLAAALLSHDAGEGHVCLPLSRLEN 60 ++ +L+A + RPLD+ FA + H A+ LA+A LS D G GHVCLPLS L Sbjct: 1 MENIILQAQKLGLWRPLDIHFAHLMVALSHSTDALFLASACLSADVGMGHVCLPLSLLTP 60 Query: 61 NEASHPLLATCVSEI------GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWC 114 + L + +L +W+ LL S +VS G TP++L +LYL+R+W Sbjct: 61 DTLFEGLHPKLAQQAWQQAGSLQLNDWQNLLLTSPSVSDGSRSTPLVLDKQQLYLHRLWQ 120 Query: 115 NERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI-NWQKVAAAVALTRRISVISGGP 173 +E TVA FF + + DE ++ L+ LFP ++ NWQK+A A+ALT ++S+IS Sbjct: 121 DECTVAHFFQR-SMLVPYDENIVRNILNALFPTTNNSINWQKIAIALALTSKVSLISYRT 179 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 K T + KLLAA++Q+ E I +AAPT K A+LT+ + +++ L D + +I Sbjct: 180 SNDKNTMITKLLAAILQINKSEYLHIIIAAPTSKVTAQLTDYIARSMMILT-HDYLRYKI 238 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 L++LLG QP S+R++++ NPL+LD+L++DE+S++DLPMM+ LI+ALP ARVI Sbjct: 239 TYQVINLYKLLGTQPNSRRIQYYCDNPLYLDILILDESSIVDLPMMANLINALPAQARVI 298 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE--AASLRDS 351 FLG+ DQ SV+ G V DI + G++ +R ++LSRLTG + + + DS Sbjct: 299 FLGNDDQFISVDTGTVFSDIFQLIDHGYSIKRCQELSRLTGYQLSNNRTNNMFSYQVTDS 358 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRG-DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 LCLLQ + SGI LA IN G + A+ + + DI DY M+ + Sbjct: 359 LCLLQNNNSLKDSSGISILANMINTGNNNDALILLNSSKYADIYYIQRHCELDYQRMVHD 418 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 + Y YL LL A P II+ FN Y+LL LR+G FGV LN IEQ + + + Sbjct: 419 CVTNYSNYLQLLNAGESPASIIEEFNRYRLLSMLRKGKFGVVCLNXCIEQTLIYYGLLKK 478 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV--WFAMPDGNIKSVQPSRLP 528 + + Y G+P+++ + +LGL+NGDIG+ L + ++ +F +P+ +IK V S LP Sbjct: 479 NSST--YAGQPIILLHDIQSLGLYNGDIGLILSESKNNKLHAYFILPNNSIKVVATSYLP 536 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQR-TPVVTRELVYTAVTRARRRLSLYA-DERIL 586 ++ T +A+TV++SQ +F HAAL+LP + +P+ TREL+Y VT+AR+ LS+YA D IL Sbjct: 537 KYATAFAITVYQSQELKFTHAALVLPDEICSPIFTRELLYAGVTKARKFLSIYAPDNEIL 596 Query: 587 SAAIATRTERRSGLAALFSS 606 + I T+RRSGL Sbjct: 597 ADIITHPTQRRSGLTDRLRR 616 >UniRef50_A3YGD9 Exodeoxyribonuclease V alpha chain n=1 Tax=Marinomonas sp. MED121 RepID=A3YGD9_9GAMM Length = 668 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 254/643 (39%), Positives = 347/643 (53%), Gaps = 42/643 (6%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 +++ +R LD+ L +AG ++ V LAA + S G+GH CLPL RL Sbjct: 25 SFFEKIAHWPSLGLIRQLDLHTCLRLAGHCHEQRSEVLLAALVTSFYLGQGHSCLPLKRL 84 Query: 59 ENNEASHPLLATCVSEIGELQ-----NWEECLLASQAVSRGDE-----------PTPMIL 102 ++ ++ + S + L L AS V + P +L Sbjct: 85 FDSPFANVTQSQWQSALHSLDVFSLDQLMCALKASPLVQLVESKPLIPKHVTTLSKPFVL 144 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAI--EVDEALLAQTLDKLFPVSDEINWQKVAAAV 160 G+RLYL R + E V + + D A L Q +E +WQK+A A Sbjct: 145 DGERLYLARYYAFETQVIEYIQKAQSHASYAFDGAWLTQLFPSGETALNEFDWQKIAVAN 204 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADG--ERCRIRLAAPTGKAAARLTESLGK 218 A + SVISGGPGTGKTTTV KLL L + A + I LAAPTGKAAARLT+S+ + Sbjct: 205 AALQSFSVISGGPGTGKTTTVTKLLVLLARQAQALSQGLTIELAAPTGKAAARLTQSIIQ 264 Query: 219 ALRQL----PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 A +L D IPE ASTLHRLLG++ G +H+A NPLHLDVL+VDEASM+ Sbjct: 265 AKDKLRKSTDFNDAVFDLIPEQASTLHRLLGSEYGRSGFKHNAKNPLHLDVLLVDEASMV 324 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR----QLS 330 DLPMM++L+ ALP +AR+I LGD+DQLASVEAG+VL D+ +E QL+ Sbjct: 325 DLPMMAKLLAALPPNARLILLGDKDQLASVEAGSVLADLTYGIEPIQFSETWAKRLGQLT 384 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 + T + A S+R SL LL KSYRF +SGIG LA+A+N GD ++ Q Sbjct: 385 QTDFTDLIQHDENHAVSIRQSLSLLVKSYRFDQNSGIGHLASAVNLGDAAQSLSILNQSG 444 Query: 391 TDIEKRLLQSGEDYIA--MLEEALAGYGRYLDLLQ----ARAEPDLIIQAFNEYQLLCAL 444 Q + + GY +Y ++ A + Q F+ YQ+LCA+ Sbjct: 445 DQYPDLAWQKLDQVEKGLDIAALAKGYDKYWLGVKGVLHDGASIQSLFQLFSNYQILCAV 504 Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR 504 R G +GV LN ++++ ++ ++ WY G+ ++I RND+ LGLFNGDIGI L Sbjct: 505 RSGDYGVESLNHQLQEHFYKRGRML--NPQGWYAGKAIIITRNDANLGLFNGDIGICLPD 562 Query: 505 GQGT---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVV 561 Q RVWF +PDG+ K+ PSRL E+E + MTVHKSQGSEF H L+LP +PV+ Sbjct: 563 EQDKERMRVWFELPDGSFKAYLPSRLSENEAVFVMTVHKSQGSEFQHVELVLPPYESPVM 622 Query: 562 TRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 T+EL+YT +TRA+ SL+A ++ I TR R SGL Sbjct: 623 TKELIYTGITRAKSHFSLWASVDVIKTGIQTRVARHSGLIDKL 665 >UniRef50_A1TWJ9 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Marinobacter RepID=A1TWJ9_MARAV Length = 750 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 264/707 (37%), Positives = 370/707 (52%), Gaps = 106/707 (14%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTV-------AGDEHPAVTLAAALLSHDAGEGHVCLPLS 56 + L + + +RPLD FA + P V L AAL SH G GHVC+ L+ Sbjct: 45 EALLGQWQQAGWIRPLDTGFARLIRELSEEQGDSPQPLVLLLAALTSHQVGRGHVCIDLA 104 Query: 57 RLENNEASHPLLATC----------------------VSEIGELQNWEECLLASQAVSRG 94 L + L + +L + L S AVS G Sbjct: 105 TLLADAGQTLALPPEEPANTGLSESEVANLQGRYPQELLSRVQLTDCLAALQGSLAVSDG 164 Query: 95 DEPTPMILCGDRLYLNRMWCNERTVARFFNEV-------NHAIEVDEALLAQTLDKLFPV 147 P P++L G RLYL R W E+ +A + L+ L KLF Sbjct: 165 SVPAPLVLNGTRLYLRRFWRYEQRIAEGIQQRLALPSPLADPQSAASQTLSTALSKLFRS 224 Query: 148 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG------ERCRIRL 201 + +++QK+A A+A R +VI+GGPGTGKTTTV LLAAL +A + RIRL Sbjct: 225 TAPVDYQKLACALAARNRFAVITGGPGTGKTTTVVNLLAALQAVAGESPERAGRKYRIRL 284 Query: 202 AAPTGKAAARLTESLGKALRQLPLTDEQ----KKRIPEDASTLHRLLGAQPGSQRLRHHA 257 AAPTGKAAARL ES+G A+ +LPL D + IP +TLHRLLG++P +++ RHH Sbjct: 285 AAPTGKAAARLNESIGGAVSKLPLADLPGSVKLEDIPTKVTTLHRLLGSRPDTRQFRHHR 344 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL +D+LV+DEASM+D+ +M+ + DALP A++I LGD+DQLASV+AGAVLG++C A Sbjct: 345 DNPLLVDILVIDEASMVDVDLMASVFDALPASAQLILLGDKDQLASVDAGAVLGELCQRA 404 Query: 318 -NAGFTAERARQLSRLTGTHVPAG-TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 +A +T + AR L+ +TG VP L ++ +L+KSYRFG DSGI QLA ++N Sbjct: 405 LDAHYTPDTARWLAAITGAQVPDSLVDNSGQPLDQAVAMLRKSYRFGQDSGIRQLAESVN 464 Query: 376 RGDKTA--VKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL--------------------- 412 + T+ + + F D+ Q+ + E + Sbjct: 465 SSELTSQVLGQIRDAGFDDVIWLNGQTPKPDPDQTLELICHHAITGSPEAFRNAGLGRVV 524 Query: 413 --------AGYGRYLDLL------------QARAEPDLIIQAFNEYQLLCALREGPFGVA 452 GY YL+++ A +++AFN++Q+LCALR+GP+GV Sbjct: 525 NGEVLPTPVGYRHYLEVIHSCDLTAGSPRAAWDAHAAEVLEAFNDFQVLCALRKGPWGVE 584 Query: 453 GLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG------- 505 GLN+RI Q + ++ I + WY GRPV++ ND LGL NGDIGI + Sbjct: 585 GLNQRIAQQLLAEKLIDKTEG--WYAGRPVLVTGNDYNLGLMNGDIGITFNVPWDRAANG 642 Query: 506 ---QGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 Q RV F D G I+ + PSRL + ET +AMTVHKSQGSEF+H L+LP + +PV Sbjct: 643 EPKQTLRVAFPSGDSTGGIRWISPSRLQQLETVYAMTVHKSQGSEFNHTCLVLPDRLSPV 702 Query: 561 VTRELVYTAVTRARRRLSLY-ADERILSAAIATRTERRSGLAALFSS 606 +T+ELVYT +TRA+ SL D ++ ++ + R SGLA Sbjct: 703 LTKELVYTGITRAKDWFSLITGDAQVFKDSVGQQVVRASGLALRLGE 749 >UniRef50_Q0VNI0 Exodeoxyribonuclease V alpha chain n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VNI0_ALCBS Length = 645 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 266/638 (41%), Positives = 352/638 (55%), Gaps = 40/638 (6%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLS--RL 58 + L+ ++ LR LDV A + A V L AA S+ GH+CL L L Sbjct: 12 EDALILLRDNNLLRDLDVAIARFLKQQCPQASYEVLLLAAFTSNQQASGHLCLDLKNRAL 71 Query: 59 ENNEASHPLLATCVSEIG-ELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 V+ + E NW L S VS+ TP++L G RLYL R W E Sbjct: 72 ATQLWGTNPPPELVALLPGEPNNWLHELQQSTLVSQNG-STPLVLDGSRLYLRRNWAREV 130 Query: 118 TVARF-FNEVNHAIEVDEALLAQTLDKLFPVSDE-INWQKVAAAVALTRRISVISGGPGT 175 VA ++ A + EA L + L KLFP S+ +WQ+VA A+A IS+I+GGPGT Sbjct: 131 AVADAIEQKLATANPLPEAPLREALAKLFPGSNNHTDWQQVACALASRSGISIITGGPGT 190 Query: 176 GKTTTVAKLLAALI--QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GKTTTV +LL L MAD +R RIRLAAPTGKAAARLTES+G+ + +L + + I Sbjct: 191 GKTTTVVRLLGLLQSLAMADNQRLRIRLAAPTGKAAARLTESIGEQVGKLHVDATVRDAI 250 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 P + +TLHRLLG +P S+ RHH NPLH D++VVDEASMID+ MM+ L++AL H R+I Sbjct: 251 PTEVTTLHRLLGTRPDSRHFRHHGDNPLHADLVVVDEASMIDMDMMACLLEALSPHTRLI 310 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG----THVPAGTGTEAASLR 349 LGD+DQLASVEAGAV+GD+C +A+ G +R + T + +L Sbjct: 311 LLGDKDQLASVEAGAVMGDLCRHAHEGRYKQRTIEFVNNTCGADISDYQETDQNPGNALA 370 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL-QSGEDYIAML 408 +L+ ++R GIG+LA A+N + V+ FQ+ + ++ L + +L Sbjct: 371 QQTAMLRTNWRSKDSPGIGELARAVNEENLPQVRESFQRYPDSLYRQHLSSDSQQLETLL 430 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEY-----------QLLCALREGPFGVAGLNER 457 G+ L A A P F+++ QLL LR GPFGV LN+R Sbjct: 431 LNGSNGHTGLRALFSAVATPPAQRHDFDDWAAGLLKQLTHQQLLSGLRSGPFGVEQLNQR 490 Query: 458 IEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT--------R 509 I +QQ+ P WY GRPVM+ RND LGL NGD+G+ L + R Sbjct: 491 ITHHLQQQ---DLAPEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLETRKGTAELLLR 547 Query: 510 VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 V F +PDG IK V PSRL ET +AMTVHKSQGSEF H L+LP P++TREL+YTA Sbjct: 548 VAFQLPDGRIKWVLPSRLDGVETVYAMTVHKSQGSEFKHTLLVLPDAPHPLLTRELIYTA 607 Query: 570 VTRARRRLSL--YADERILSAAIATRTERRSGLAALFS 605 VTRAR R +L + +L +A+ RT R SGLA S Sbjct: 608 VTRARDRFTLLEFGKSAVLDSAVKKRTWRASGLAERLS 645 >UniRef50_Q1NL94 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Deltaproteobacteria RepID=Q1NL94_9DELT Length = 645 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 207/629 (32%), Positives = 308/629 (48%), Gaps = 42/629 (6%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRL 58 L L + + + D +A +A + PAV LA L +GHVC+ L + Sbjct: 33 NLANILHHWRQRELIAEFDRHWAALLARLDPAASPAVLLAGTLARRAVDQGHVCVDLEAI 92 Query: 59 ENNEASHPLLATCVSEIGELQNW---------EECLLASQAVSRGDEPTPMILCGDRLYL 109 + + + + + TP++L LYL Sbjct: 93 CGQQWPADGDEKIRWPAAKSLASALAASSLVARQAMGDERQDGSETANTPLVLADKLLYL 152 Query: 110 NRMWCNERTVARFFNEVNHA------IEVDEALLAQTLDKLFPVS--DEINWQKVAAAVA 161 R W E +A F + + A+ L L S + Q+ A A Sbjct: 153 RRYWQYESDLAAFIRQRAAPQGVTATPQAPPGQPAEQLAALAAGSGVELAAEQQRAVLAA 212 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG-KAL 220 +R+++VISGGPGTGKTT + +L AL Q R+ L APTGKAAARL +++ K Sbjct: 213 CSRQLTVISGGPGTGKTTIIFFIL-ALSQRLATTPPRVLLLAPTGKAAARLGQAVREKKE 271 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEASMIDLPMM 279 +PE+A T+HR LG QP S R A NPL D++VVDEASM+D+ ++ Sbjct: 272 ELAATAAVALAELPEEAMTIHRALGYQPASPTIFRRRADNPLAADLVVVDEASMVDIALL 331 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 S+L A+P AR++ LGD+DQLASVEAG++LGDICA A++ + + L Sbjct: 332 SKLFAAVPATARLVLLGDQDQLASVEAGSILGDICAAASSPESEPPGATTAPLAQQ---- 387 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT-DIEKRLL 398 SL + L++ +RF GIG L A+ G A V D + ++ + L Sbjct: 388 ------GSLAAGVVTLRRGFRFDPGRGIGALVDAVRAGQPEAALQVLANDQSGEVVCQPL 441 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 A + ++G+ L P + +++LL A R G GV LN Sbjct: 442 AEPGADPAFAQLLISGFRAALTAT----SPAQALAHLADFRLLAAHRRGAAGVEELNRCC 497 Query: 459 EQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA---LDRGQGTRVWFAMP 515 + Q + WY G+P++I ND L LFNGD+G+ + R +F+ Sbjct: 498 RHILHQAGLLPAAAG-PWYRGQPLLITANDYNLRLFNGDLGVIWESTEDDGELRAFFSSA 556 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 +G ++S+ PSRLP HET +AMT+HKSQGSEF+ A++LP + +P++TREL+YTA++RARR Sbjct: 557 EGRLRSLSPSRLPAHETAFAMTIHKSQGSEFEQVAVVLPGEASPLLTRELLYTAISRARR 616 Query: 576 RLSLYADERILSAAIATRTERRSGLAALF 604 ++ L+A +++ AI R R SGLAA Sbjct: 617 KVLLFATPAVIAEAIGQRVRRTSGLAARL 645 >UniRef50_D1A5Y8 Helicase, RecD/TraA family n=15 Tax=Bacteria RepID=D1A5Y8_THECD Length = 762 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 154/621 (24%), Positives = 246/621 (39%), Gaps = 85/621 (13%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENN 61 +L V + D + A+ + D + LS A GH LP L + Sbjct: 202 PYRLAADVWGIGFKTADTIAQAVGIPHDSPERIKAGLRYTLSQAADAGHCYLPEPNLLSE 261 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 A + + E + + V +YL + E ++A Sbjct: 262 TAKILQVDAEQVGPCLEELVAEEGVVRETVRTTGGNQV-----PAVYLLPFYRAECSLAA 316 Query: 122 FFN--------EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 + +VD L + + Q+ A +ALTR+++V++GGP Sbjct: 317 ALLGLLRCDADRLAAFGDVDWEAALGWLARR-TGQQLADEQRQAVQLALTRKVAVLTGGP 375 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 G GK+ TV ++ ++A ++ + L APTG+AA RL E G Sbjct: 376 GCGKSFTVRSVV----ELAKAKKATVLLVAPTGRAAKRLAELTGH--------------- 416 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 +AST+HRLL QPG ++ +PL D++VVDE SM+DL + ++L+ A+P A ++ Sbjct: 417 --EASTVHRLLELQPGGD-PKYDRDHPLQADLVVVDECSMLDLVLANKLVKAIPPGAHLL 473 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD DQL SV AG VL D+ A Sbjct: 474 LVGDVDQLPSVGAGEVLRDLLAADVIPH-------------------------------V 502 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L K +R SGI A IN G A+ F+D + D L A Sbjct: 503 RLTKIFRQAQQSGIVVNAHKINAGRPPAL-----TGFSDFFWFGCEPPADSG--LNPAEE 555 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHR 470 +D++ R + + Q+L + GP G A LN +++ + R+ R Sbjct: 556 TAKLVVDIVARRIPARFGLDPRRDVQVLTPMHRGPAGAASLNALLQEALTPYREGVPERR 615 Query: 471 HPHSRWYEGRPVMIARNDSALG---LFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSR 526 H + G V RN+ G +FNG +G+ + + + + Sbjct: 616 HGGRVFRPGDKVTQLRNNYDKGKAGIFNGTVGVVTGLSLEDGTLTVVTDEDETVDYDFAE 675 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L E +A+T+H+SQGSE+ + + ++ R L+YTAVTRAR+ + L R L Sbjct: 676 LDELAHAYAVTIHRSQGSEYPAVVVPITMSAWTMLQRNLLYTAVTRARKLVVLVGSRRAL 735 Query: 587 SAAIATR--TERRSGLAALFS 605 + A+ T R + LA Sbjct: 736 AVAVRTPGTGRRHTALAHRLQ 756 >UniRef50_B7KWK3 Helicase, RecD/TraA family n=16 Tax=Bacteria RepID=B7KWK3_METC4 Length = 750 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 137/609 (22%), Positives = 232/609 (38%), Gaps = 81/609 (13%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENN 61 +L + + D + L + + + + L EGH LP++RL Sbjct: 199 PYRLARDIRGIGFKTADAIAMKLGLTKEAPQRLRAGVSFALQTAMDEGHCALPVARLTEL 258 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA- 120 + + + E Q + I ++L + ER +A Sbjct: 259 AQKLLEVEAPLIRSAVAEEIERGDEVIQDI---------IGDQACVFLRGLHAAERGIAD 309 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKT 178 R + E L + L + + Q A + L ++ VI+GGPG GKT Sbjct: 310 RLIERASGTPPWSEIDLGKALPWVEQKTGKALSPSQAEAVRLLLASKLCVITGGPGVGKT 369 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 +T+ +L L + + LAAPTG+AA R+TE G +A Sbjct: 370 STLDSVLRIL----QAKGVHVLLAAPTGRAAKRMTEQTG-----------------LEAK 408 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLL P +PL+ D+LV+DE SM+D+P+M+ L+ A+P A ++ +GD Sbjct: 409 TIHRLLEIDPKHGGFTRDEESPLNCDLLVIDETSMVDVPLMNALLKAVPPRAGLLLVGDV 468 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV G VL D+ A + L + Sbjct: 469 DQLPSVGPGQVLADVIASERVP-------------------------------VARLTEV 497 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R ++S I A IN G R + + Y+ +++ G G+ Sbjct: 498 FRQAAESRIIVNAHRINHGQMPE------------RPRPGEKADFYLIEIDDPEVGVGKL 545 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI-HRHPHSRWY 477 ++++ R + + Q+L ++ G G LN +++ + R+ Sbjct: 546 IEIVTRRIPRTFGLDPLRDVQVLTPMQRGSLGSRNLNHELQRVLNPNPPAQVERFGWRFA 605 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 G VM +ND +FNGD+G+ D L +A T Sbjct: 606 PGDRVMETQNDYDREVFNGDLGMVARIDDDEGAVIVTFDDREVIYPFGELDTLVPAFATT 665 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA--TRTE 595 +HKSQGSE+ + + +Q ++ R L+YT VTR ++ + L + + A+ Sbjct: 666 IHKSQGSEYPAVVIPIVTQHFNMLARNLLYTGVTRGKQLVVLIGQRKAIGMAVRSGQTKR 725 Query: 596 RRSGLAALF 604 R + L Sbjct: 726 RFTKLREWL 734 >UniRef50_B3ECZ3 Exodeoxyribonuclease V, alpha subunit n=7 Tax=Chlorobiaceae RepID=B3ECZ3_CHLL2 Length = 588 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 230/601 (38%), Positives = 333/601 (55%), Gaps = 35/601 (5%) Query: 17 RPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 R +D Q A + DE + +LLS G+G+VCL L + P + Sbjct: 8 RSIDRQIAEYLCRSINDETGVMRTVVSLLSQAVGQGNVCLDLEEVAGEVVRIPGREEPL- 66 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNEVN--HAI 130 + +++ L + V R E P+IL RLYL R + + T+A Sbjct: 67 RLPDIERLVSALRSLHTVGRPGEHRPLILDEAGRLYLYRYFRYQETLAEAILARAATETG 126 Query: 131 EVDEALLAQTLDKLF-PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 DEA L+++LD+ F P + Q+ AA AL R SVISGGPGTGKTTTV ++L ++ Sbjct: 127 SPDEAALSESLDRYFGPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVVRILGLML 186 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG 249 + GER RI +AAPTGKAAARL S+ LP ++E K+ +P +T+HRLLG P Sbjct: 187 EQPGGERMRIAMAAPTGKAAARLASSIASLRETLPCSEEVKRHLPGQVTTIHRLLGTIPN 246 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 S RH+A NPL D ++VDEASM+DLP+M+ L+ AL HAR+I +GDRDQLASVEAGAV Sbjct: 247 STGFRHNARNPLPYDTIIVDEASMVDLPLMTALVTALMPHARLILIGDRDQLASVEAGAV 306 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 LGDIC A + +G+ A S++ + +L ++YRFG SGI Sbjct: 307 LGDICRAAES---------------------SGSAAFSIKGCVTVLDRNYRFGDGSGIAS 345 Query: 370 LAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD 429 L+ AIN GD + L++ A+ + A P+ Sbjct: 346 LSRAINSGDAGEALRLLGD--PANTTIALEATPTREAVRKRLAARVLEGFRPYLEAETPE 403 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDS 489 ++ F+ +++L ALREGP+G AG+N +E + + + + +Y GRPV++ ND Sbjct: 404 EALRLFDHFRILTALREGPWGAAGMNHTVETLLHEAGLLT--ASTPFYRGRPVLVTENDY 461 Query: 490 ALGLFNGDIGIALDRGQ--GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 LFNGD GI L + + +F DG ++S+ P LP H T +AMTVHKSQGSEFD Sbjct: 462 THKLFNGDTGIILPDPETGKQKAYFIASDGTVRSIPPEFLPAHVTAFAMTVHKSQGSEFD 521 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSR 607 ++LP + T ++TREL+YT +TRAR+ +++++DE + SA++ RTERRSGL + + Sbjct: 522 RVLMVLPPEDTILLTRELIYTGITRARQAVTVWSDETVFSASVKRRTERRSGLREMLVDK 581 Query: 608 E 608 + Sbjct: 582 Q 582 >UniRef50_A8FUM3 Exodeoxyribonuclease V n=7 Tax=Shewanella RepID=A8FUM3_SHESH Length = 683 Score = 444 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 252/679 (37%), Positives = 346/679 (50%), Gaps = 82/679 (12%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEH--------------PAVTLAAALLSHDAGE 48 ++ L + + PLD FAL +A L ALLS + Sbjct: 8 IKALLKVWESERLITPLDRHFALEMAQLHKIKLHKTEHADHTYSELFLLICALLSRQLSQ 67 Query: 49 GHVCLPLSRLENNEASHPLLATCVS-----EIGELQNWEECLLASQAVSRGDEPTPMILC 103 H CLP+ ++ + ++ C EI E+ + + TP+IL Sbjct: 68 QHTCLPIHQIMLDNPMQEPISNCQILCSHNEIIEILAQFNAISSPGLEQASSPSTPIILD 127 Query: 104 GDRLYLNRMWCNERTVARFFNEVNH----AIEVDEALLAQTLDKLFPVSDE-----INWQ 154 LYL R + E VA + + + TL+ LFP SDE +WQ Sbjct: 128 NGDLYLQRYYQFETQVASYLTLLADVEINEQPTEINHTRSTLEMLFPQSDEMGATDFDWQ 187 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 K+A A A T+R++VI+GGPGTGKTTTV KLL L Q A IRL APTGKAAARL+E Sbjct: 188 KIATATAFTKRLAVITGGPGTGKTTTVTKLLFLLTQQAA---MTIRLVAPTGKAAARLSE 244 Query: 215 SLGKALRQL---------PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDV 265 S+ + +L + R+PE+ASTLHRLLG P S + RHH NPL LD+ Sbjct: 245 SIKASKVRLKMELAPFADQIDLTSLSRVPEEASTLHRLLGVIPNSPKFRHHKDNPLRLDL 304 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAER 325 LVVDEASM+DLPMM +L+ ALP HAR+I LGD+DQLASVEAGAVL DICA T Sbjct: 305 LVVDEASMVDLPMMHKLLSALPTHARLILLGDQDQLASVEAGAVLADICAGLKQKNTRTN 364 Query: 326 ARQLSRLTGTHVPAG-------------TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 A +++ + DSLC+L S+RF D+GIGQLA Sbjct: 365 ASDAKWQMRYSSDYAGYLSTLSGFDLSPFISQSPKIGDSLCMLMHSHRFKGDAGIGQLAG 424 Query: 373 AINRGDKTAVKTVFQQDFTDIEK----RLLQSGEDYIAMLEEALAGYGRYLDLLQ-ARAE 427 A+N DK + V+Q + ++ + A+L +A+ Y RYL++ + + Sbjct: 425 AVNNSDKGRIMQVWQTGYDELLWIEHLKTNAGNSGLDALLTQAVEHYRRYLEMAKDDNKD 484 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 II +NE+++LCA+R G +GV G+N+ + ++Q + I + +Y GRPV+I N Sbjct: 485 ASEIIDCYNEFRVLCAMRAGEYGVDGINQGVTAALKQAKLI--SADTEFYPGRPVIIQSN 542 Query: 488 DSALGLFNGDIGIALDRG------------------QGTRVWFAMPDGNIKSVQPSRLPE 529 D LGLFNGDIG+ L F DG+I V P+RLP Sbjct: 543 DYNLGLFNGDIGLILPDDLNTVSDHLAQDGDTAKHSARLMAHFIQADGSILKVLPARLPS 602 Query: 530 HETTWAMTVHKSQGSEFDHAALILP----SQRTPVVTRELVYTAVTRARRRLSLYADERI 585 H+T +AMTVHKSQGSEF + AL+LP + ++T+ELVYTA+TRA+ + + + Sbjct: 603 HDTCFAMTVHKSQGSEFANVALVLPIWPSPAQKQLLTKELVYTAITRAKLHFTCLGSQAV 662 Query: 586 LSAAIATRTERRSGLAALF 604 A T+R SGLA Sbjct: 663 FEHASLQATQRSSGLARRL 681 >UniRef50_A9L0I2 Exodeoxyribonuclease V, alpha subunit n=12 Tax=Shewanella RepID=A9L0I2_SHEB9 Length = 740 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 251/722 (34%), Positives = 346/722 (47%), Gaps = 133/722 (18%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVA-----GDEHPAVTLAAALLSHDAGEGHVCLPLSR 57 L + L + + + L PLD FAL ++ +HP L ALLS H CL L+ Sbjct: 30 LPELLKQWEQERLLTPLDRHFALEMSHLHPSDSQHPLFILLCALLSQQLSSQHSCLVLAH 89 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 + + C + L+ E L AV + P+I RLYL R E Sbjct: 90 IVPLNPMAEQSSHCKISL-SLEALTETLQTFDAVGQAGSNKPLIFDNGRLYLQRYHQFET 148 Query: 118 TVARFFNEVNHAI------------EVDEALLAQTLDKLFPVS----------------- 148 +VA ++ ++ + A L LD+LFP + Sbjct: 149 SVAASLIRLSGSVSKHFSEEVNHQEQTQTAKLRSLLDQLFPATVSDPHSLTTNVLTTSVI 208 Query: 149 ---------DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------ 193 I+WQKVA A AL ++++VI+ Sbjct: 209 TKSDSTQSTAPIDWQKVATATALGKKLAVIT---------GGPGTGKTTTVTKLLLLLQM 259 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-------------------KRIP 234 + IRL APTGKAAARL+ES+ + +L RIP Sbjct: 260 ESQQEIRLVAPTGKAAARLSESIKASKARLAKELSAHTDVVDEARNRNNQDFLTALGRIP 319 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 E+ASTLHRLLG P S RHH GNPL LD+L+VDEASM+DLPMM +L+ ALP+HA +I Sbjct: 320 EEASTLHRLLGVIPNSPHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHASLIL 379 Query: 295 LGDRDQLASVEAGAVLGDICAYANAG----------------------FTAERARQLSRL 332 LGD+DQLASVEAGAVL DICA ++ E+A +LS L Sbjct: 380 LGDQDQLASVEAGAVLADICAGLKMPVEPNNLAQNNTASNNSALWQMRYSKEQAERLSAL 439 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 TG + ++A L DSLC+L S+RF D+GIGQLA+A+NR D + V+QQ + Sbjct: 440 TGFELTP-YISDAPKLGDSLCMLMHSHRFKGDAGIGQLASAVNRADLQGILQVWQQGPAE 498 Query: 393 IEK--------------RLLQSGEDYIAMLEEALAGYGRYLDLLQ---------ARAEPD 429 + + +LE+A YG YL L R Sbjct: 499 LSWLEHSMALSQTQAKVSEPANNMGLNLLLEQACQQYGIYLSALNSDENHSDLSKRPSTA 558 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDS 489 II++FN+Y++LCA+R G +GV G+N+ + Q + + I P +Y GRP++I ND Sbjct: 559 EIIESFNQYRILCAMRSGDYGVEGINQYVTQALANAKLI--KPLQEFYLGRPIIIQSNDY 616 Query: 490 ALGLFNGDIGIAL---DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 LGLFNGDIG+ L D+ + F DG++ V P+RLP HET +AMTVHKSQGSEF Sbjct: 617 NLGLFNGDIGLILQDEDKPERLMAHFIKADGSLLKVLPARLPSHETCYAMTVHKSQGSEF 676 Query: 547 DHAALILPSQRT----PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAA 602 AL+LP + ++T+ELVYTA+TRA+ + + + A + T+R SGLA Sbjct: 677 SRVALVLPPNPSLAQWQLLTKELVYTAITRAKVHFTCLGTQHVFERASSQATQRASGLAD 736 Query: 603 LF 604 Sbjct: 737 RL 738 >UniRef50_Q3IJ15 Exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase n=3 Tax=Alteromonadales RepID=Q3IJ15_PSEHT Length = 671 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 237/632 (37%), Positives = 345/632 (54%), Gaps = 33/632 (5%) Query: 6 QLLEAVEHKQLRPLDVQFALTVA------GDEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59 L + ++R +DV+ A ++ + H + LL H CL LS ++ Sbjct: 38 LLTYLLSENRIRIVDVKLAEMLSKSNSDSENTHNEMFYLVLLLCLSQQSQHSCLTLSEVD 97 Query: 60 NNEASHP----------LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYL 109 + + + +S E N+E+ L Q + P+ L RLY Sbjct: 98 WSNPFNLRRSDFSKTQGSVPDKLSPFSEGFNYEQVLSYLQNHTSVGANKPLQLFNQRLYF 157 Query: 110 NRMWCNERTVARFFNEVNHA-IEVDEALLAQTLDKLFPVSDE--INWQKVAAAVALTRRI 166 R+ E+T+A ++ + ++ LLA L++ F +WQKVA A+A T+ Sbjct: 158 ARLAGYEQTLASRLITMSERTLNINNELLAALLNEYFTPDANIATDWQKVACAIAATKGF 217 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 225 SVI+GGPGTGKTTTV KLLA L + I+L APTGKAAARL+ES+ A +L + Sbjct: 218 SVITGGPGTGKTTTVTKLLAILQSLYKTAPLSIKLVAPTGKAAARLSESILGAKDKLTNI 277 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 + + IPE A T+HRLLG +P + + RH+ NPLHLDVL++DEASM+DL +M++LI+A Sbjct: 278 PADIRTLIPESAQTIHRLLGVKPFTNKFRHNKANPLHLDVLIIDEASMVDLSLMAKLIEA 337 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICA----YANAGFTAERARQLSRL--TGTHVPA 339 LP HAR+I LGD+DQLASV+ G+V+ D+C G++ R +L+ L G Sbjct: 338 LPAHARLILLGDKDQLASVDTGSVMSDLCQGLVLGQTPGYSPARCDELNNLCFNGEAKLI 397 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD----FTDIEK 395 A L D + LQ SYRF + SGIGQLA A+N + + V Q+ F D+ Sbjct: 398 AQSNSAFKLADCIAFLQHSYRFDAQSGIGQLALAVNTNNTGVLNYVEQESVEGRFKDVIL 457 Query: 396 RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 + +++ A + Y YL L+ A + +AF YQLL A+REG +GV LN Sbjct: 458 DYDFIAKPIEKLVKSAASKYTHYLSLIAQGASVAEVHKAFASYQLLAAVREGDYGVNSLN 517 Query: 456 ERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAM 514 +RIE+ +QQ+ I P+ R Y G P+M+++ND L LFNGDIGI + G + F Sbjct: 518 QRIERVLQQQGLITLSPNQRHYTGMPIMVSQNDYQLKLFNGDIGILMPDESGQLKALFID 577 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS--QRTPVVTRELVYTAVTR 572 GN ++ P+RLP H+ + MT+HKSQGSEF + A++LP Q + R+LVYT +TR Sbjct: 578 EQGNQRAFSPARLPAHDKVYVMTIHKSQGSEFSYTAMVLPPLKQARMGINRQLVYTGITR 637 Query: 573 ARRRLSLYADERILSAAIATRTERRSGLAALF 604 A+ L AD+++L A+ R SGL Sbjct: 638 AKNTFELVADKKVLLLAMNKSVSRASGLYERL 669 >UniRef50_A3MYX5 Exodeoxyribonuclease V alpha chain n=11 Tax=Pasteurellaceae RepID=A3MYX5_ACTP2 Length = 645 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 237/646 (36%), Positives = 341/646 (52%), Gaps = 50/646 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTV---------AGDEHPAVTLAAALLSHDAGEGHVCL 53 + L E E + LD QFA + + L AAL+S +GH + Sbjct: 1 MLTLLYELKETNVISELDYQFAKMIDRKQQSYPYTEQQKNLAVLLAALVSFHVMQGHAAI 60 Query: 54 PLSR--------LENNEASHPLLATCVSEIG--ELQNWEECLLASQAVS-RGDEPTPMIL 102 L L N L + +IG W+ L A S + PM+ Sbjct: 61 RLDSQASRFFFGLSNRNEEKALNDEILQKIGGITPLEWQGVLQNHIAFSSDPKQVAPMLF 120 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAV 160 LY R W E +A + + E + AL Q L+KLF SDE+NWQK+A A Sbjct: 121 QHGLLYFYRYWQAENNIANYLVKAVEFPEQIANTALDKQILEKLFEKSDEVNWQKIAVAT 180 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC---RIRLAAPTGKAAARLTESLG 217 A+ ++ S+ISGGPGTGKTTTVAKLLAAL + + L APTGKAAARL ES+ Sbjct: 181 AIKQKFSIISGGPGTGKTTTVAKLLAALQEKQLRSGKAMLNVALVAPTGKAAARLKESIT 240 Query: 218 KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 +L L L IP AST+HRLLG +P S R+H+ NPLH+D+LVVDEASMIDL Sbjct: 241 LSLSVLNL----NFEIPTTASTIHRLLGIRPQSDEPRYHSKNPLHIDLLVVDEASMIDLF 296 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 +M +L+ AL + R+I LGD+DQLASVEAGA++G++ A+ G++ + L+++T + Sbjct: 297 LMEKLMAALKPNTRLIILGDKDQLASVEAGAIMGELGAFLQQGYSRKHCDYLNQVTEYQL 356 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 ++ + DSLC L+KSYRF ++SGIGQLA +N +F + D+ Sbjct: 357 --VPKGKSLPICDSLCHLKKSYRFDANSGIGQLAKLVNEKQAVESWQLFAKGSADLSLIE 414 Query: 398 LQSGED-----------YIAMLEEALAGYGRYLDLLQARAEP------DLIIQAFNEYQL 440 D + ++A+ Y YL L++ R + I + F + + Sbjct: 415 YAHTSDFPEKQQWIQNCVKQITDKAVELYKEYLTLVKQRYNNPTKVSVNEIFEVFQKVRF 474 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 L ALR GV LN+RIE + + I +Y G+P++I +N +++GDIGI Sbjct: 475 LSALRISELGVEQLNKRIETALAAAKLISLEQSKNYYIGKPLLITQNSPQNHIYSGDIGI 534 Query: 501 ALDRGQG-TRVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT 558 L G +RV+F D S+ +RLPE E + MTVHKSQGSEF+H LI P Sbjct: 535 ILPDENGISRVYFDTKIDDGYLSLSLNRLPEFEPAYVMTVHKSQGSEFEHTLLITPLHFA 594 Query: 559 PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 PV+++EL+YTA+TRA++ +L+ ++++ A+ +R+SGL A Sbjct: 595 PVMSKELIYTAITRAKKHFTLFGEKQVWLQAVNNNLQRQSGLKAQL 640 >UniRef50_C1D6T5 Exonuclease V alpha subunit RecD n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6T5_LARHH Length = 654 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 266/651 (40%), Positives = 351/651 (53%), Gaps = 51/651 (7%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 L L V ++LRPLD A +A D PAV LA L SH G GH L L+ + Sbjct: 6 SLFAVLDTLVGTRRLRPLDRALARFLAGHVPDTPPAVLLATVLASHQLGRGHPALDLAAV 65 Query: 59 ENNEASHPLLATCVSE---------IGELQNWEECLLASQAVSR--GDEPTPMILCGDRL 107 + A+ A G L W L ++ + R D P++L G L Sbjct: 66 HADPAATLGWADDGDTPDLTALPVFAGPLSGWLAQLESAACIDRPPADSGAPLVLAGHNL 125 Query: 108 YLNRMWCNERTV-----ARFFNEVNHAIEVD---EALLAQTLDKLFPVSDEINWQKVAAA 159 YL R W E TV AR + ++ + LLA D + +WQ VA A Sbjct: 126 YLRRYWQCEETVVEAIRARLPQRLAVPDDLSVRLDRLLADMRDADEAARRQTHWQSVAVA 185 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR---IRLAAPTGKAAARLTESL 216 +A +ISGGPGTGKTTTV +LL L + IRLAAPTGKAAARL +S+ Sbjct: 186 LAARLGFCIISGGPGTGKTTTVVRLLGLLQGLTLDAGRTPLAIRLAAPTGKAAARLQDSI 245 Query: 217 GKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL 276 +A+ +L ++ +P + STLHRLLG P S+ RHHAG PL LDVLV+DEASMIDL Sbjct: 246 RQAVARL--DPAVREHVPAEVSTLHRLLGPLPDSRHFRHHAGQPLPLDVLVIDEASMIDL 303 Query: 277 PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFT-------AERARQL 329 MM+ ++ ALP HAR+I LGD+DQLASVEAGAVLG +CA + + Sbjct: 304 EMMAAVLSALPAHARLILLGDKDQLASVEAGAVLGSLCAGSRVDVQDPAQWAGSHEMAAW 363 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 + G A +L D + +L+KS+RFG DSGIG+LA A+N GD + TV+ + Sbjct: 364 LGAASGYAVKADGLPAGALTDHVVVLKKSHRFGDDSGIGELARAVNDGDASRAATVWPRH 423 Query: 390 FTDIEKRLLQSGEDYIAMLEEA---------LAGYGRYLDLLQAR------AEPDLIIQA 434 I + S L+ A Y YL+++ A +++A Sbjct: 424 ADSIARLEPASRCIEQLALQGRSSGSPAGWQAASYRAYLEIMAAGDQGDPDGWARQVLEA 483 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 FN +++LCALR+G GV+G+N IE ++ + S WY GRPVM+ +ND LGL Sbjct: 484 FNRFRVLCALRQGEEGVSGVNAAIEASLRTAGLLP-AGRSEWYAGRPVMVLKNDYGLGLM 542 Query: 495 NGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALIL 553 NGD GIAL T RV FA+PDG ++ V PSRL + E+ +AMTVHKSQGSEF H L+L Sbjct: 543 NGDTGIALPMPDATLRVCFALPDGRVRQVLPSRLTDVESAFAMTVHKSQGSEFSHTVLLL 602 Query: 554 PSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 P +P++TRELVYT +TRAR RL+L I A++ RT R SGLA Sbjct: 603 PQHDSPILTRELVYTGITRARDRLTLVGSADIFRRAVSRRTVRHSGLAQRL 653 >UniRef50_Q1N2Q9 Exodeoxyribonuclease V alpha chain n=1 Tax=Bermanella marisrubri RepID=Q1N2Q9_9GAMM Length = 620 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 246/628 (39%), Positives = 353/628 (56%), Gaps = 47/628 (7%) Query: 4 QKQLLEAVEHKQ--LRPLDVQFALT-VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 + QL +E R +D QFA + + + + A L+S G+G+VC +S+ Sbjct: 3 EYQLNRFLEQHGQAFREIDKQFAKFCLDLSKDDHLAIIALLVSDQLGQGNVCFDISQPH- 61 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 I E ++ + D+ P++ G R+YL R E V Sbjct: 62 -------------SILSESELSELCHLAKQANSNDQNFPLVFEGSRIYLQRYHQYECFVE 108 Query: 121 RFFNEVNHAIEVDEAL--LAQTLDKLFP---VSDEINWQKVAAAVALTRRISVISGGPGT 175 + E D + L ++ LFP EI+WQKVA +VA+ +VISGGPGT Sbjct: 109 QAIRSRCQQYENDLEVDSLLNMINNLFPPNYSKQEIDWQKVAVSVAVQSAFTVISGGPGT 168 Query: 176 GKTTTVAKLLAALIQMADGERCR--IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GKTTTV KLLA LI+ + + IRLAAPTGKAA RLTES+G+A +L + + K I Sbjct: 169 GKTTTVIKLLALLIEQYKVKGRQPIIRLAAPTGKAAMRLTESIGQAKHRLQVDEHVKDAI 228 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 PE+ASTLHRLL + NPLHLD+LVVDEASMIDLPMM++L+ ALP H +++ Sbjct: 229 PEEASTLHRLLKRNREGD-FYFNQMNPLHLDILVVDEASMIDLPMMAKLLAALPKHGQLV 287 Query: 294 FLGDRDQLASVEAGAVLGDICAYA-NAGFTAERARQLSRLTGTHVPAGTGT----EAASL 348 LGD+DQL+SVEAG+VL DIC GF+ + + +++LT + A + Sbjct: 288 LLGDKDQLSSVEAGSVLADICDSGTRHGFSESQLKLINQLTDIPLDQLKQNVAELHGAEI 347 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 R+ +C L+KS+RF SGI LA A N GD + +F+ DF+D+ L +L Sbjct: 348 RNHVCHLRKSHRFSDHSGIAALARAANNGDVNRWQQIFEGDFSDLNFFDLTESNRQTLIL 407 Query: 409 EEALAGYGRYLDLL----QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 + A Y Y +L+ + A + + FN Y++LCA++EG GVAG+N+ +EQ + Sbjct: 408 QSA-KLYSEYQNLIASDDNSDAVARRVHEVFNRYRILCAVKEGELGVAGINQSLEQALGY 466 Query: 465 KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA----LDRGQGTRVWFAMPDGNIK 520 + WY GRP+MI +ND L L+NGD+GI +D R F D I+ Sbjct: 467 QE--------TWYAGRPIMIQQNDYGLNLYNGDVGIVLPRLIDGKTQLRAAFLNADSEIR 518 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 +QP+RLP+HET +AMTVHKSQGSEF+H AL+LP PV+T+EL+YT +TRA+ RL+L Sbjct: 519 WLQPARLPQHETVYAMTVHKSQGSEFEHCALVLPEYPAPVLTKELLYTGITRAKARLTLL 578 Query: 581 ADERILSAAIATRTERRSGLAALFSSRE 608 A +++++ + + +R SGL + E Sbjct: 579 ARDKLIAYTLRNQVQRASGLRDRLWTVE 606 >UniRef50_D2B1Q1 Exodeoxyribonuclease V n=9 Tax=Actinomycetales RepID=D2B1Q1_STRRD Length = 738 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 146/622 (23%), Positives = 249/622 (40%), Gaps = 93/622 (14%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENN 61 +L + V + D + A+ + D V LS A +GH LP L + Sbjct: 190 PYRLADDVWGIGFKTADTIAQAVGIPHDSPERVKAGLRYTLSQAADDGHCYLPAPNLVAD 249 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + ++ + E + + V GD P + YL E ++A Sbjct: 250 AVKILEVPAELTVRCLEELVAEEGVVREEVPAGDSLVPAV------YLVPFHRAELSLAG 303 Query: 122 FFNEVNHAI--------EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 + + VD + + L K ++ Q A +AL +++V++GGP Sbjct: 304 SLRALLTSGHDRLGVFGSVDWQVALEWLHK-QTDAELAPEQAHAVRLALCEKVAVLTGGP 362 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 G GK+ TV ++ +A ++ ++ LAAPTG+AA RL E G Sbjct: 363 GCGKSFTVRSIVT----LARAKKAKVILAAPTGRAAKRLAELTGH--------------- 403 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 +A+T+HRLL +PG NPL D++VVDEASM+DL + ++L+ A+ ++ Sbjct: 404 --EATTVHRLLQLRPGGD-ATFDRDNPLDADLVVVDEASMLDLLLANKLVKAIAPGTHLL 460 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 F+GD DQL SV AG VL D+ A Sbjct: 461 FVGDVDQLPSVGAGEVLRDLLAAEEE------------------------------IPRV 490 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L +R +SG+ A +N G A++ + DF + Sbjct: 491 RLTHIFRQAQESGVVVNAHRVNTGLPPALEGMG--DFFLFPCEEPEEIAAL--------- 539 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHR 470 +D++ R + + Q+L + G G LN +++ + R+ R Sbjct: 540 ----TVDVVANRIPRKFGLNPRRDVQVLAPMHRGAAGAGNLNNALQEALTPSREGMPERR 595 Query: 471 HPHSRWYEGRPVMIARNDSALG---LFNGDIGIALDR-GQGTRVWFAMPDGNIKSVQPSR 526 + + G V RN+ G +FNG +G+ +D ++ + Sbjct: 596 YGGRVYRVGDKVTQLRNNYDKGAAGVFNGTVGVVVDIKPDDHKLTVLTDEDENVEYAFDE 655 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L E +A+++H+SQGSE+ + L + ++ R L+YTA+TRA++ + + R L Sbjct: 656 LDELAHAYAVSIHRSQGSEYPAVVIPLATSAWMMLQRNLLYTAITRAKKLVVIVGSRRAL 715 Query: 587 SAAIATR--TERRSGLAALFSS 606 + A+ TR R + L S Sbjct: 716 AQAVRTRGAGRRHTSLTHRLRS 737 >UniRef50_B5JRL2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRL2_9GAMM Length = 672 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 250/665 (37%), Positives = 346/665 (52%), Gaps = 63/665 (9%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL- 58 L + A + LR +DV + + A A A +S GH+CL L RL Sbjct: 6 LPPAVERARQQGWLRAIDVALVQFLQQQDDSADDSALAAAALVSQQLSLGHICLDLDRLF 65 Query: 59 ----------------ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL 102 + A H LA+ + ++G + L ASQ V ++ P++L Sbjct: 66 TEQGECAQRMMGETPKHTSAAPHTNLASELYQLGWPA-LKAALQASQFVGEKNDDKPLVL 124 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNH---AIEVDEALLAQTLDKLFPVSDE----INWQK 155 RLYL+ W E VA+ A ++ LD LFP S NWQK Sbjct: 125 DESRLYLHSQWRTEHRVAQHLASRIKNALKPPQTPATRSKILDALFPSSPNSEAATNWQK 184 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 +A A AL SVI+GGPGTGKTTTV K+L AL+ + I LAAPTGKAAAR+ ES Sbjct: 185 IACANALRGHFSVITGGPGTGKTTTVVKVLCALLAQQSDQTLHIYLAAPTGKAAARMQES 244 Query: 216 LGKALRQLPLTDEQ--------KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 + AL + + ++++ A T+HRLLG P S+ RH+ +PL DV++ Sbjct: 245 MNHALESHAIDPKLFDGQLDNWREQLQVKAKTIHRLLGVIPSSREFRHNERHPLRCDVVI 304 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA-GFTAERA 326 VDEASMI L M L+ ALP+ ++ LGD+DQLASVEAGAV+GD+C A+ + + A Sbjct: 305 VDEASMIALDQMDSLLRALPESTHLVLLGDKDQLASVEAGAVMGDLCQGADDIDYQPQHA 364 Query: 327 RQLSRLTGTHVPAGTGTEAASLR-DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 LSR++G + A R + LLQ S+RF ++SGIGQLA AIN G + + + Sbjct: 365 EWLSRVSGETLKASAINPQGHDRLQCITLLQHSHRFDANSGIGQLAEAINGGHQNDIDPL 424 Query: 386 FQQDFTDIEKRLLQSGEDYIAM--LEEALAGYGRYLDLLQAR------------AEPDLI 431 FQ+ +DI L + E GY YL LQ + + Sbjct: 425 FQR-HSDIGLVALTQWRSLCRLGNAELDATGYAHYLQQLQQQRPAADAAPADFDQWALTL 483 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR----WYEGRPVMIARN 487 ++A N +QLLCALR G +GV +N+ IE +Q++ + R + WYEGRP+MI +N Sbjct: 484 LKARNRFQLLCALRRGEWGVEAINQAIEADLQRQHLLPRDDEQQPKAVWYEGRPIMIQKN 543 Query: 488 DSALGLFNGDIGIALDR-----GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542 D +GL NGD G+ L + F D ++ + PSRL ET +AMTVHKSQ Sbjct: 544 DYPVGLMNGDTGLVLSKPDANGDNRLYAVFPDADQGVRWIAPSRLSHVETAFAMTVHKSQ 603 Query: 543 GSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL-YADERILSAAIATRTERRSGLA 601 GSEF+H AL+LP + +PV++RELVYTAVTRA+ + SL AD ++L T R SGL Sbjct: 604 GSEFEHTALLLPPEDSPVLSRELVYTAVTRAKAQFSLCCADTQLLKQLSQRPTMRSSGLQ 663 Query: 602 ALFSS 606 + Sbjct: 664 RQLEN 668 >UniRef50_B0B9E0 Exodeoxyribonuclease V alpha chain n=15 Tax=Chlamydiaceae RepID=B0B9E0_CHLT2 Length = 746 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 134/607 (22%), Positives = 241/607 (39%), Gaps = 79/607 (13%) Query: 6 QLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEA 63 L + + + D + L V + + L EGH C PL+ Sbjct: 185 LLAKEMYGIGFKTADLIATCLGVPLNSPNRIVAGIQYSLDELQEEGHTCYPLNDFIVLVE 244 Query: 64 SHPLL--ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + E++ L + V + + ++ +++ E+ +A Sbjct: 245 KLLNEEAPEEIIRKEEIRTQIHFLSRQKTVYVKE-----LEQDTYIWSRQLFLAEQQIAI 299 Query: 122 FFNEVNHAIEVDEALLAQT----LDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGK 177 + + + ++ Q ++ L + QK A + +++I +ISGGPGTGK Sbjct: 300 DIRRLLFSSKRIRSINTQEAILEVENLLDL-KLEEKQKEALHASSSQKIHIISGGPGTGK 358 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 +T +L+ ++ +I LAAPTGKAA R+TE GK Sbjct: 359 STITRAILSIFEKI--SSPKKIILAAPTGKAAKRMTEITGKRT----------------- 399 Query: 238 STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 T+H LL + R + +P+ D+++VDE+ MID ++ R + ALPDHA +I +GD Sbjct: 400 QTIHSLLQYDFKTLSFRKNHEDPIDCDLVIVDESGMIDTILLQRFLAALPDHAILILIGD 459 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 QL SV G VL D+ + + L K Sbjct: 460 VHQLPSVGPGNVLKDLILSHHIE-------------------------------VTYLTK 488 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 +R +S I A +N+G+ + + + +D++ +E + Sbjct: 489 IFRQLQNSNIITNAHKVNQGEFPVLNSSSGK-------------KDFLFFQKEDPEEAIK 535 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 ++ L + P + Q+L +R+G G+ LN ++ + + + + Sbjct: 536 HIIHLVSDFVPKKFGIFTKDIQVLAPMRKGVLGILNLNRELKAALNPNKLFIQGKFHSFS 595 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 G VM RN+ +FNGDIG T+ DG S + L + +A + Sbjct: 596 TGDRVMQTRNNYNKEVFNGDIGYVTSIDLSTKSLIVCVDGRYISYSQAELNDLIPAYATS 655 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TE 595 +HK QGSE L + + ++ R L+YTA+TR ++ + L ++ ++ A+ Sbjct: 656 IHKYQGSETSCIILPIHTSHYVMLYRNLLYTAITRGKKLVILVGTKKAVAIAVRNDKVQH 715 Query: 596 RRSGLAA 602 R +GL Sbjct: 716 RCTGLQQ 722 >UniRef50_A1SUW2 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Psychromonas RepID=A1SUW2_PSYIN Length = 698 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 259/685 (37%), Positives = 367/685 (53%), Gaps = 83/685 (12%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAV-TLAAALLSHDAGEGHVCLPLSRLENN 61 + QL + E LR +D FA +A + L+AA S G GH+CLP+ + Sbjct: 1 MLTQLKQWKEQGLLRSIDYHFAAFMAEMGADKLTQLSAAFCSEYLGLGHICLPVEEIIIR 60 Query: 62 ------------------------------EASHPLLATCVSEIGEL------------- 78 + + CV + L Sbjct: 61 LNDKCSLSELDLQGFCREHDMECLLQNNFEAHALLSSSICVGDNAPLCLQFNALYLTRYA 120 Query: 79 ---QNWEECLLASQAVSRGDE---PTPMILCGDRLYLNRMWC----------NERTVARF 122 Q + LL +S G + ++ + YL + WC E+ + Sbjct: 121 LFEQLIADKLLDQPKLSLGSDIKVELDVLFATNYTYLWQDWCRDPRQPLPLLCEKYIDLL 180 Query: 123 FNEVNHAI-------EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 + + + A Q L L P + NWQKV+AA+ALT VISGGPGT Sbjct: 181 PGSTVDWVGVEQLFSQAENAQDLQPLGSLIPENKRCNWQKVSAALALTTARCVISGGPGT 240 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTTTV KLLA L++ I+L APTGKAAARLTES+ AL +L + K ++P+ Sbjct: 241 GKTTTVTKLLALLLKF--QPTLLIKLVAPTGKAAARLTESITHALVELNIEPGIKDKMPK 298 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A+T+HRLLG + S R + L++D+LVVDEASM+DLP+M++L+ ALPDHAR+I L Sbjct: 299 VATTIHRLLGVKANSNHFRFNQDEKLNVDLLVVDEASMVDLPLMAKLLMALPDHARLILL 358 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD+DQLASVEAGAVLGDIC + +G++A++A+ L+ LTG T + ++ D+LCLL Sbjct: 359 GDKDQLASVEAGAVLGDICHFIESGYSAKKAQLLADLTGYTSLTKTAPRSPNMADNLCLL 418 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 +KSYRF SGIG LA AIN G + K + D + + + + L GY Sbjct: 419 RKSYRFDQYSGIGYLAKAINSGRANSKKVMALCDDYNDLQHYPNTELGKKELAALVLEGY 478 Query: 416 GRYLD-----LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI-- 468 YL + R +++ FN++++LCA REG +GV LN+ E +++ + Sbjct: 479 RPYLQNLSTITVDNRNLAGQLLKQFNQFKILCATREGEWGVKCLNKLCETVLEKAGLLTT 538 Query: 469 ------HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTRVWFAMPDGNIKS 521 +H + WY GRPVMI +N+ LGL+NGDIG+ LD RV+F MPD +I Sbjct: 539 GQVHKDPQHAYVYWYVGRPVMITQNNYHLGLYNGDIGLCLLDESLQLRVYFQMPDASIAD 598 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 QPSRLP HET +AMTVHKSQGSEF+H L LP VV+REL+YTA+TRA+++L+L+A Sbjct: 599 FQPSRLPNHETVFAMTVHKSQGSEFEHTVLALPENHVSVVSRELIYTAITRAKKQLTLFA 658 Query: 582 DERILSAAIATRTERRSGLAALFSS 606 D ++++A+ +T+R S L S Sbjct: 659 DLSLMASAMRHKTKRFSRLVERLKS 683 >UniRef50_C1SHH8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHH8_9BACT Length = 585 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 215/588 (36%), Positives = 307/588 (52%), Gaps = 23/588 (3%) Query: 17 RPLDVQFALTVAGD-EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEI 75 R +D+ FA +A P L AL+ + G+ CL ++ + S Sbjct: 15 RDIDIYFARNLADTFGAPEGALLFALVFNVTEGGNTCLNMAE--PEKISFYKSFNKEINN 72 Query: 76 GELQNWEECLLASQAVSRGDE-PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDE 134 +N L+ A+ P I G +Y+ + +E +V + A + Sbjct: 73 AFSENVIAGLITKGALCEAPAISAPFIKAGSSIYMKSFYSDENSVGIYIKNRVSAPYIMT 132 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + +DK FP E N QK AA SVISGGPGTGKT+TV LLA L +M+ Sbjct: 133 PETEKLIDKYFP---ENNMQKAAAINTAMNSFSVISGGPGTGKTSTVFNLLAVLAEMS-S 188 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 E +I + APTGKAAARLTES+ + + + +IPE A T+HRLLG S+ R Sbjct: 189 EPVKIAVCAPTGKAAARLTESISEKREEYK-HEAFIDQIPEKALTIHRLLGMAGDSRVPR 247 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + N L DV+V DEASMID+ M++L +AL D R+I LGD+DQLASV+ GAV+GDIC Sbjct: 248 FNKENKLPYDVVVADEASMIDVRNMAKLTEALSDDCRLILLGDKDQLASVQPGAVMGDIC 307 Query: 315 -AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 A F+ +RA LS+ T + AG D +L KSYR+ S++GIG LAAA Sbjct: 308 SAAPVDEFSTDRAEILSKYTTGTIKAGKS----PYADVTIMLDKSYRYDSNAGIGLLAAA 363 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG-RYLDLLQARAEPDLII 432 RGD V D T + L E A GY R+ + + +L I Sbjct: 364 AGRGDHKTALEVLLNDTTKKVEFLELDNN-----FETAAGGYVLRHFESYSREQDQNLAI 418 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 +AFN++++L R+ G A +N +Q + + H +Y G PVM+ ND +L Sbjct: 419 EAFNKFRILTPHRQMNGGTAHINTIAQQTLFRAG--HTDNTKHFYHGMPVMVVENDYSLN 476 Query: 493 LFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 +FNG+ G+ L + + FA I+ + P+RLP H ++MTVHKSQGSEFDH I Sbjct: 477 IFNGETGLILGNSE-LKSCFAHDKDKIRHITPARLPAHVPAYSMTVHKSQGSEFDHVLFI 535 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 LP + ++TREL YTAVTRA+ +L++ + + + ++ + ER SGL Sbjct: 536 LPDSDSAILTRELFYTAVTRAKTKLTVISTKDAVRKCLSAKIERSSGL 583 >UniRef50_A6DHN1 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN1_9BACT Length = 737 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 142/610 (23%), Positives = 244/610 (40%), Gaps = 86/610 (14%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH---DAGEGHVCLPLSRLEN 60 L E++ D A + + A+ ++ + +GH C+P L N Sbjct: 198 PYILAESIRGIGFIQADK-LAQNLGIEATNPFRTASGIVHTVKVQSQDGHTCMPREFLLN 256 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 + + T L+ + + + + LY + +E ++ Sbjct: 257 KASEMLKVDTANI----LEGLQRAIKDGSIIEEVHQEM------SYLYERHLHNDEESLL 306 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + I++D+ + F S+ QK A + +R+S+I+GGPG GKTTT Sbjct: 307 DH---LLGFIKLDKQYPHAQSEVDFLNSELNTEQKQAVNTSFNKRLSIITGGPGVGKTTT 363 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 V +++ Q + +I+LAAPTG+AA RL E+ G A T+ Sbjct: 364 VKEIV----QQSRKHGKKIKLAAPTGRAAQRLGEASGAR-----------------ALTI 402 Query: 241 HRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH-ARVIFLGDR 298 HRLL + S+ + L D+LVVDE SM+D+ + +L A+ + ++ +GD Sbjct: 403 HRLLMSDSESEGEFVFNEYKKLKCDILVVDEVSMLDISLARKLFAAIDHNETHLVLVGDP 462 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV G VL D+ L L + Sbjct: 463 DQLPSVGPGFVLNDLIESQLIP-------------------------------LTALHQV 491 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R S S I A IN G + ++ + D D E M+ + Sbjct: 492 FRQASSSRIITNAHRINLGQEPDLRQIEG-DHNDFYFIHQDDPEKLFPMISK-------- 542 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWY 477 +++ R I A + Q+L + G G LN +++ + +K SR+ Sbjct: 543 --MIKERIPQKFDISA-KDIQILMPMNRGKCGCEALNLYLQEDLNDIHKKQFNFGKSRFI 599 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 G V+ N+ +FNGD+G +D + + DG S + +A+T Sbjct: 600 LGDRVIQTVNNYTKKVFNGDMGYIVDIYNEEKSFIIDFDGLQVSYDFEEAEQIRLAYAIT 659 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TE 595 +HKSQGSEF + + + ++ + L+YTA+TRA+ L L + + +S IA + ++ Sbjct: 660 IHKSQGSEFPAVIVPMNTSHYIMLKKNLLYTAITRAKELLVLCSSRQAISQCIANKGMSK 719 Query: 596 RRSGLAALFS 605 R + L Sbjct: 720 RFTLLKYKLQ 729 >UniRef50_A7K3N3 Exodeoxyribonuclease V alpha chain n=60 Tax=Gammaproteobacteria RepID=A7K3N3_VIBSE Length = 715 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 266/486 (54%), Positives = 350/486 (72%), Gaps = 20/486 (4%) Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-DGERC 197 QTLD+L P+S +NWQKVAAAVALTRR +VISGGPGTGKTTTV KLLAALI+ A + Sbjct: 232 QTLDELVPLSACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNL 291 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 I+L APTGKAAARLTES+GKA+++LP++ E K +IP ++STLHRLLGA P S RH+ Sbjct: 292 TIKLVAPTGKAAARLTESIGKAVQELPVSPELKAKIPTESSTLHRLLGAIPNSAEFRHNK 351 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPLHLD+LV+DEASM+DLPMM +++DALP HAR+I LGD+DQLASVEAGAVLGDIC++ Sbjct: 352 QNPLHLDILVIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFH 411 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G+ E+A +++LTG A TG A+S+ DSLC+LQKSYRF + SGIGQLA A+N G Sbjct: 412 ALGYGKEQASAIAKLTGFDTLAHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSG 471 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR------------ 425 +V V+ +DF+DIE L S + Y M++ + YGRYL + + Sbjct: 472 SAASVDNVWARDFSDIEHFAL-SSQHYNQMMQTLVQEYGRYLKRIGQQETDPKTGEPESL 530 Query: 426 -AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 + ++ FN+ +LLCA+REG FGVAGLN+RIE+ + RK+ + WY GRPVM+ Sbjct: 531 THKAKAVLDTFNQCRLLCAIREGDFGVAGLNQRIEKALA-ARKLIQVQDEIWYHGRPVMV 589 Query: 485 ARNDSALGLFNGDIGIALDRGQGT----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 RND LGL+NGDIGI + +V+F +PDG++KSV PSR+PEHET +AMT+HK Sbjct: 590 TRNDHGLGLYNGDIGICMRDDSEEEPRLKVFFELPDGSVKSVLPSRVPEHETAYAMTIHK 649 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL 600 SQGSEFD+ +ILP +P++TREL+YT +TRA++RL+LYA+ +L I +T R SGL Sbjct: 650 SQGSEFDYTLMILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTTRASGL 709 Query: 601 AALFSS 606 ++ Sbjct: 710 VQRLTN 715 Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 16/162 (9%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA------GDEHPAVTLAAALLSHDAGEGHVCLPL 55 L L LR LD QFA + ++ A+ A ++S + G+GH+CL L Sbjct: 13 SLLVVLERLAHKGALRQLDYQFACFIDSQTNDEQPDNQALAFIAGVVSSELGKGHICLSL 72 Query: 56 -------SRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLY 108 + L + A ++ + +W E L S V E P++ G+RLY Sbjct: 73 FDAQGQSTDLASKLGLFGESALALNTQLQGIDWIEVLQNSSVVGAQGEALPLMFDGERLY 132 Query: 109 LNRMWCNERTVARFFNEVNHAIEVDEA---LLAQTLDKLFPV 147 L+R W E T+A N++ A+ + L++ L+ LF Sbjct: 133 LHRYWHYEVTLAEKLNQLGAAVNLQPQEFVRLSELLNHLFAR 174 >UniRef50_C5CL22 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Betaproteobacteria RepID=C5CL22_VARPS Length = 708 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 258/675 (38%), Positives = 352/675 (52%), Gaps = 74/675 (10%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLE 59 L + E LR LD FA + A+ LAAAL+ H G GH CL L L Sbjct: 26 LLTMMASWREQGWLRRLDTAFARFLVDLSPTAPDALVLAAALVVHMEGRGHSCLRLDELL 85 Query: 60 NNEASHPLLATCVSEI---------GELQNWEECLLASQAVSRGDEPT---------PMI 101 + + + G++ W S V D + P++ Sbjct: 86 RDPQAVLGWPPEPAAALRVALDSLPGDVDIWIATFQTSPLVGSDDGASRSTTIDAHPPLM 145 Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNHA-IEVDEALLAQTLDKLFPV--------SDEIN 152 L G LYL R W +ER VA + + + + VD + LD+LFP I+ Sbjct: 146 LRGHTLYLRRYWEDERRVAAQVDARSRSELPVDPVTVRMWLDRLFPADTHASPDSEAAID 205 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-RCRIRLAAPTGKAAAR 211 WQK A AVAL ++S+++GGPGTGKT T A+LLA L + R RI LAAPTGKAAAR Sbjct: 206 WQKAACAVALRSKLSILTGGPGTGKTYTAARLLALLYAVDPAPERLRIALAAPTGKAAAR 265 Query: 212 LTESLGKALRQLP------LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDV 265 L +++ +L +L L+ A TLH LLGA+P ++ A +PL +DV Sbjct: 266 LKQAIETSLTELQDRLGDSLSLGALAAHIGAARTLHALLGARPDTRAFGFDAAHPLDVDV 325 Query: 266 LVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAE 324 ++VDEASMI L MM+ L++ALP ARVI LGD+DQLASVEAGAVLGD+C +A G + Sbjct: 326 VIVDEASMIHLEMMAALLEALPTQARVILLGDKDQLASVEAGAVLGDLCRHAEHGLYRLS 385 Query: 325 RARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKT 384 A + +G H+PA + L +L+ S RFG IGQLA A NRGD A + Sbjct: 386 TAAYVEAASGQHIPAAYMGDGPPLAQQTVMLRASKRFG--GAIGQLALAANRGDSAAAEA 443 Query: 385 VFQQD-----------------FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 + + D ++ R + A GYG YL LQAR Sbjct: 444 LLRDDSSPAVAWLDGGSASTAVRLALQGRDAAGEAGGVDDAVGAYGGYGVYLTALQARPR 503 Query: 428 PD----------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 D +++AF +++LCA+REG +G GLN+ IE+ + + ++ + WY Sbjct: 504 GDEAPAHAGWTLAVLRAFERFRVLCAVREGEWGAMGLNQAIERALVAEGRLTKAG--EWY 561 Query: 478 EGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWFAMPDGNIKSVQPSRLPEHETTW 534 EGRPV++ RND+ LG+FNGDIGI L +G R +F + +++SV SRL ET + Sbjct: 562 EGRPVIVTRNDAGLGVFNGDIGITLKPAAKGAPLRAYFLDGE-SVRSVAVSRLAHVETAF 620 Query: 535 AMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI-LSAAIATR 593 AMTVHKSQGSEF H AL+LP + + V+TRELVYT +TRAR +L L+ A+A Sbjct: 621 AMTVHKSQGSEFAHTALVLPREPSRVLTRELVYTGITRARDAFTLVTGRTASLADALAHP 680 Query: 594 TERRSGLAALFSSRE 608 T R SGL + E Sbjct: 681 THRASGLLERLAPAE 695 >UniRef50_B3EIT2 Helicase, RecD/TraA family n=13 Tax=Bacteria RepID=B3EIT2_CHLL2 Length = 740 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 147/610 (24%), Positives = 237/610 (38%), Gaps = 86/610 (14%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAA---ALLSHDAGEGHVCLPLSRLENNEA 63 L ++ D A + + A +L A GH +P RL A Sbjct: 200 LSLDIDGIGFLTADT-IASKLGIAHDSLIRAEAGVRHVLQELASSGHCAVPKERLVQESA 258 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE-RTVARF 122 + ++ + E + V + + YL + E +T A Sbjct: 259 AMLDISAPIVE----EAIAVETGKFNLVRETIDGAEI------FYLAPLHRAEEKTAAAL 308 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + L + + ++ + QK A A+ LT + +VI+GGPG GKTT Sbjct: 309 AALLRGRTPWKGIDLQKAVVQIAEETGLQLSPSQKEALALVLTNKATVITGGPGVGKTTL 368 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 V +L + + +I L APTG+AA RL+ES G +A T+ Sbjct: 369 VNAILRVIRKKTT----KILLCAPTGRAAKRLSESTGM-----------------EAKTI 407 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLL P S + +GNPL D++VVDE SM+D+ +MS+L+ A+P A ++ +GD DQ Sbjct: 408 HRLLEFDPNSGGFKRSSGNPLEADMVVVDETSMVDIVLMSKLLSAVPAKAALLLVGDADQ 467 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV GAVL DI A + L + +R Sbjct: 468 LPSVGPGAVLTDIIASDAVP-------------------------------VVRLTEIFR 496 Query: 361 FGSDSGIGQLAAAINRGDKTA-VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 + S I A IN G+ + DF + + ++ + + + Sbjct: 497 QAARSQIIVNAHRINNGEIPRNAEGEELSDFYVVNSQTPENI-------------HAKLM 543 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYE 478 ++ R + Q+L + G G LN +++ + S + Sbjct: 544 QMVTERIPARFGFHPVRDIQVLTPMNRGGLGSRALNAELQKALNGSAEPKVSRFGSIFSP 603 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 G V+ N+ +FNGDIG D + S L E +A ++ Sbjct: 604 GDKVIQMVNNYDKEVFNGDIGAITAIDTEESELTVDFDKRPVRYEFSELDELALAYATSI 663 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ER 596 HKSQGSE+ + L Q ++ R L+YTAVTR ++ + + A + L+ A+ R R Sbjct: 664 HKSQGSEYLAVVIPLAMQHFTLLERNLIYTAVTRGKKLVVIIAQPKALALAVTNRKADRR 723 Query: 597 RSGLAALFSS 606 + LA + Sbjct: 724 MTTLALKLTE 733 >UniRef50_Q7VRF0 Exonuclease V, alpha chain n=2 Tax=Candidatus Blochmannia RepID=Q7VRF0_BLOFL Length = 640 Score = 433 bits (1114), Expect = e-120, Method: Composition-based stats. Identities = 212/639 (33%), Positives = 339/639 (53%), Gaps = 38/639 (5%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHP--------------AVTLAAALLSHDAGE 48 +Q L + + K LD+QF+ + + P + LA+ +S Sbjct: 1 MQHLLKKIISLKLHNELDIQFSKMLITESFPCDNTNNYYHNIKKIVLMLASIYVSTYVRS 60 Query: 49 GHVCLPLSRLENNEASHPLLATCVSEIGE------LQNWEECLLASQAVSRGDEPTPMIL 102 GH CLP+ L + + + EI + +W++ LL+S AV G TP++L Sbjct: 61 GHTCLPIYLLSSGKLFQNYHPDLIHEIIQKTKKLSTNDWQDILLSSSAVGDGSSITPLVL 120 Query: 103 CGDRLYLNRMWCNERTVARFF-NEVNHAIEVDEALLAQTLDKLF-PVSDEINWQKVAAAV 160 RLYL+ +W +E TVA+FF + N +D+ + L+KLF S EINW K+A A+ Sbjct: 121 NNRRLYLHYIWEHECTVAKFFVHHSNDDSYLDQTKITIILNKLFLKTSKEINWHKIATAL 180 Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 ++ +ISG GTGKT+T+A+++ AL + + RI++ PTGK+A LT + K Sbjct: 181 SMIHSRILISGEAGTGKTSTIAQIITAL--LLYNNKLRIKMVTPTGKSATVLTHACHKIF 238 Query: 221 RQL-PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPL----HLDVLVVDEASMID 275 L L A+T+H LG + ++ + ++D L++DEASMI Sbjct: 239 NDLNQLHMSNVHTSDLKATTIHNFLGLKLYNKYKYQYQYYSNYLNTNIDCLIIDEASMIS 298 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 L ++S+LI L ++ +VI +GD QL +E+G+V DIC ++N G++ ++ +L +LT Sbjct: 299 LSLLSQLIMHLSNNTKVILIGDHHQLHPIESGSVFQDICQFSNFGYSIQQQEKLKKLTNH 358 Query: 336 HVPAGTGTEAAS-----LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF-QQD 389 + + + + D +C+ +K+YRF +SGI LA ++ GD + + Sbjct: 359 TLSMNNSSYTQNNYCNTIADKICIFKKNYRFHKNSGIIHLAKSVKIGDYNQTLFILHSKQ 418 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA-EPDLIIQAFNEYQLLCALREGP 448 +TD+ LQ +DYI ++ Y YL ++Q ++ F Y++LCALR GP Sbjct: 419 YTDLSYNHLQKKKDYINLIIHCAKKYSNYLKIIQNNKVSIKHALKIFEYYRILCALRHGP 478 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG- 507 FGV LN IEQ + + I + Y GRP++I +N+ +L L+NG+IG+ L Q Sbjct: 479 FGVTQLNHYIEQVLNDQSLITLNHSGN-YIGRPIIILQNEPSLELYNGEIGLLLLNSQNY 537 Query: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 +F IK++ ++LP +ET +AMT+HK+QGSEF H ++I P TP++TREL+Y Sbjct: 538 LSAYFLSSLHEIKTIPINQLPSYETCFAMTIHKAQGSEFQHISIIFPYHHTPILTRELLY 597 Query: 568 TAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 TA+TRAR+ L LYA + +L I R SGL Sbjct: 598 TAITRARQHLDLYATDNVLIHTINLMNHRYSGLFDQIKK 636 >UniRef50_A3WKH6 ATP-dependent exoDNAse (Exonuclease V), alpha subunit, superfamily I helicase n=1 Tax=Idiomarina baltica OS145 RepID=A3WKH6_9GAMM Length = 633 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 217/634 (34%), Positives = 327/634 (51%), Gaps = 49/634 (7%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTV--AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 L+ E EH+ +R LD + +G+ + A+ A L SH AG G L L L+ Sbjct: 9 LRAIADEWFEHEWIRALDRAMVDFLFRSGETNVAMLALAMLTSHQAGRGLTSLKLEDLKA 68 Query: 61 NEASHPLLATCVS--EIGELQNWEECLLASQ-----AVSRGDEPTPMIL----CGDRLYL 109 + L ++ L + +VS + +P++L G+RLYL Sbjct: 69 SPERCLALPPSGRSHDVTLPSKLLNELSVFEGDWQTSVSLNSDSSPLVLNKSSDGERLYL 128 Query: 110 NRMWCNERTVAR-FFNEVNHAIEVDEALLAQTLDKLF-PVSDEINWQKVAAAVALTRRIS 167 R W E ++ +++ +EV++ L TLD LF S +++WQ++A A A S Sbjct: 129 RRYWYCEHYNSQNLEMRMDNTLEVNDDQLNMTLDALFGDTSKQLDWQRMACANAARSAFS 188 Query: 168 VISGGPGTGKTTTVAKLLAALIQM---ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 VI+GGPGTGKT TV +LL L Q A G RI+LAAPTGKAAARL+ES+ +AL +L Sbjct: 189 VITGGPGTGKTYTVVRLLVVLQQQFQQAHGRPLRIKLAAPTGKAAARLSESINEALSELQ 248 Query: 225 L-----TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 I +AST+H+LLG S+R RHH NP+ D++V+DEASM+D+ MM Sbjct: 249 TKLPETLQPLLATIQIEASTVHKLLGVIANSRRYRHHEKNPVRADLIVIDEASMLDIEMM 308 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT---GTH 336 + L+ A P A+++ LGD+DQLASVEAGAVLG++C A G T Sbjct: 309 TALLQATPTQAQLVLLGDKDQLASVEAGAVLGNLCEGAEKGGYWSSTINSLASTHAQRDA 368 Query: 337 VPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKR 396 + + +L+++ RF I +A +IN + A++ F ++ + Sbjct: 369 LIQYQDEAGPKRLQHVVMLRQTRRFEQ--AIADVANSINDQNTRAIEHFFSAPVSEYDSN 426 Query: 397 -------LLQSGEDYIAMLEEALAGYGRYLDLLQ----ARAEPDLIIQAFNEYQLLCALR 445 + + ++++ + Y R L+ + + + ++ A+ +QLL LR Sbjct: 427 IVTWLMLEHDRQDSFDLLIKQGFSHYLRALEQWREAPAEQRDTAAVLDAYATFQLLTGLR 486 Query: 446 EGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 GP+G LN + + RWYEGRPVM+ +ND L L NGDIG+ Sbjct: 487 NGPWGAHALNRYVADVLG-------VEADRWYEGRPVMVTKNDYGLRLNNGDIGVTFRMP 539 Query: 506 QGTRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 + R+ A D G +K V PSRL ET + MTVHKSQGSEF H L+ P +PV+T+ Sbjct: 540 ETGRLRVAFFDSHGKVKWVLPSRLNHVETVYVMTVHKSQGSEFAHTVLVTPQHDSPVLTK 599 Query: 564 ELVYTAVTRARRRLSLYADER-ILSAAIATRTER 596 EL+YT VTRA+++L+L ++ + A++ R R Sbjct: 600 ELLYTGVTRAKKKLTLVVSKKSVFLNAVSKRINR 633 >UniRef50_Q02HF8 Exodeoxyribonuclease V alpha chain n=27 Tax=Bacteria RepID=Q02HF8_PSEAB Length = 721 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 279/679 (41%), Positives = 356/679 (52%), Gaps = 75/679 (11%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLE 59 L +QL V LR LD F + P V LAAAL SH G GHVCL L Sbjct: 30 LLRQLDLWVARGWLRALDRAFVAFLVELQPQADPRVLLAAALTSHQLGHGHVCLDLEATL 89 Query: 60 NNEASHPLLATCVSEIGE------------LQNWEECLLASQAVSRGDE----------- 96 + L E + L W E L AS V DE Sbjct: 90 GAPDAALSLPPEGDEGRDVLLPSQLLRGVRLDAWREALAASSLVEVVDERPGDPEPSETA 149 Query: 97 PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE------ 150 +P++LC RLYL R W +E +A E A LA L LF + Sbjct: 150 TSPLVLCAQRLYLRRYWRHELEIALALRERLGRQAPLAADLAPRLAALFAQAPTEDGQRV 209 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKA 208 +WQK+A A+A S+I+GGPGTGKTTTV +LL L +A G+ RIRLAAPTGKA Sbjct: 210 TDWQKLACALAARGYFSLITGGPGTGKTTTVVRLLGLLQAPAVAAGQPLRIRLAAPTGKA 269 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 AARL+ES+G+ +R LPL ++ + IP + +TLHRLLG++P ++ RHH NPL LDVLVV Sbjct: 270 AARLSESIGQQVRALPLAEDVLQAIPAEVTTLHRLLGSRPDTRHFRHHRDNPLALDVLVV 329 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERAR 327 DEASMIDL MM+ L+DALP AR+I LGD+DQLASVEAGAVLGD+C A G ++AE Sbjct: 330 DEASMIDLEMMASLLDALPPQARLILLGDKDQLASVEAGAVLGDLCRDAEEGWYSAETRA 389 Query: 328 QLSRLTGTHVPAGT--GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR---GDKTAV 382 L R++G +A L +L+ S RFG+ SGIG+LA +NR GD A+ Sbjct: 390 WLQRVSGETWQGLREGSAQAHPLAQQTVMLRHSRRFGASSGIGRLARLVNRQQAGDARAL 449 Query: 383 KTVFQQDFTDIEKRLLQSG--------------------EDYIAMLEEALAGYGRYLDLL 422 D D+ R + Y+ L E G L+ Sbjct: 450 LDSPPADLFDLRLRGERDAAFARLFVDGHPQAPGTPYGYRHYLQRLAEGRPAAGLALEDG 509 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 ++ AF+ ++LLCALR GP+GV GLN+R+ + + I WYEGRPV Sbjct: 510 AWERWAQSVLTAFDAFRLLCALRRGPWGVEGLNQRVAAELLRLGLI--EADHGWYEGRPV 567 Query: 483 MIARNDSALGLFNGDIGIALDRGQG---------TRVWFAMPDGN--IKSVQPSRLPEHE 531 ++ RND +LGL NGDIGIAL + RV F DG+ ++ V PSRL E + Sbjct: 568 LVTRNDYSLGLMNGDIGIALRLPERNDDGSLRFALRVAFPRNDGSGGVRFVLPSRLVEVD 627 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAI 590 T +AMTVHKSQGSEF H AL+LP PV+T+ELVYT +TRAR SL + A+ Sbjct: 628 TVFAMTVHKSQGSEFAHTALVLPDALNPVLTKELVYTGITRARDWFSLVESLPGVFEEAV 687 Query: 591 ATRTERRSGLAALFS-SRE 608 + R SGL RE Sbjct: 688 RRKVRRLSGLMLHLRPERE 706 >UniRef50_B8J4Q4 Helicase, RecD/TraA family n=9 Tax=Bacteria RepID=B8J4Q4_DESDA Length = 749 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 131/619 (21%), Positives = 235/619 (37%), Gaps = 82/619 (13%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAA---ALLSHDAGEGHVCLPLSRL 58 + +L + D A + + + + A +L +G+V LP + L Sbjct: 201 ENPYRLAMDIHGIGFVTADAA-ARKLGFEHDHPLRVQAGTLYVLQKATDDGNVYLPQTAL 259 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + + + + + + +YL R + E Sbjct: 260 MEAVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGT--QPETGVYLRRYFHCESK 317 Query: 119 VARFFNEVNHAI-----EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 A + + + E +AL+ + + +L Q A + ++ V++ Sbjct: 318 TAFYLQRLMRSPKSIRFENPDALVDKVVGEL--NISLAPEQLEAVRTSARSKVMVLT--- 372 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 G T ++ A+I++ R RI LAAPTG+AA R+ E+ G+ Sbjct: 373 -GGPGTGKTTIINAIIRLFAEVRARILLAAPTGRAAKRMAETSGR--------------- 416 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 ++ T+HRLL P + +PL +LVVDEASM+D + L+ A+P A ++ Sbjct: 417 --ESRTIHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLV 474 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD QL SV G VL DI A + Sbjct: 475 LVGDVHQLPSVGPGNVLADIIASGVVP-------------------------------VV 503 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVK--TVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 L + +R ++S I A INRG+ +++ DF I + + D Sbjct: 504 ELTEIFRQSAESEIICNAHLINRGEVPSLESSKDRLSDFYFIHQNDPEKAADL------- 556 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH 471 +DL++ + ++ Q+L + +G G +N R+++ + R Sbjct: 557 ------MVDLVRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEALNPNGLEVRR 610 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHE 531 + VM RN+ +FNGD+G R D + + L E Sbjct: 611 GERAFRLHDKVMQIRNNYDKDVFNGDMGRISFLDLADRTLSVTFDERVVPYEFDELDELA 670 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +A+++HKSQGSE+ + + Q ++ R L+YT TR ++ + L + R L A+ Sbjct: 671 PAYAISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVGESRALHMAVK 730 Query: 592 TRT--ERRSGLAALFSSRE 608 +R + LA + E Sbjct: 731 NNKTRKRYTRLAERLAPGE 749 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 141/637 (22%), Positives = 234/637 (36%), Gaps = 105/637 (16%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEA 63 L + + + D A + + V L + + LS A EGHV +L Sbjct: 437 LADDIWGIGFKTADS-IAEKLGFQKESFVRLRSGIMYTLSSLADEGHVYAGRDQLIRKAV 495 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT-----PMILCGDR-----------L 107 + Q + + + +++ + P G R + Sbjct: 496 QLLEAEESSIVMTLDQMIADKDVIREKITQTEPEASVQMYPEGREGQRADREENGTIDAI 555 Query: 108 YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS----------------DEI 151 YL + E +A + D + + + + Sbjct: 556 YLPPFYYAETGIADRLKRLAETPAQDRLWVQLMQARKQTGNPELSIDVSHIEKKIHMEYD 615 Query: 152 NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 Q A A T ++ +++ G T + ++ +I LAAPTG+AA R Sbjct: 616 EIQADAIRKAATSKVMILT----GGPGTGKTTTVQGILAAYRAFGLKILLAAPTGRAAKR 671 Query: 212 LTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 L E+ G +A T+HRLL +P + + + +PL DVLVVDE Sbjct: 672 LEETTGM-----------------EAKTIHRLLEYKP-PEGYQKNEEHPLEGDVLVVDEC 713 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSR 331 SMID+ +M+ L+ A+P R + +GD DQL SV AG VL D+ Sbjct: 714 SMIDIILMNALLKAVPPGMRFVLVGDVDQLPSVGAGNVLRDMMDSGCFP----------- 762 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 + L + +R S I A IN G + DF Sbjct: 763 --------------------VIRLTRIFRQAQTSRIVMNAHRINEGRLPDISNGNDADFF 802 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGV 451 IEK EE ++L+Q + ++ Q+L +++G G Sbjct: 803 FIEK-------------EEPEEAVAEIVNLVQQKLS-RFYHTPVSQIQVLTPMQKGAVGA 848 Query: 452 AGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW 511 A LN +++ + + + R + VM +N+ +FNGDIG G R Sbjct: 849 ANLNLALQEALNPQGEGLRRSGFVYRMDDKVMQIKNNYDKEVFNGDIGFIESVDVGARTL 908 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 DG I S L E +A T+HK+QGSE+ + + ++ R L+YT +T Sbjct: 909 KVSFDGRIVEYDASELDELVHAYATTIHKAQGSEYPIVVMPVLMNHYVMLQRNLIYTGIT 968 Query: 572 RARRRLSLYADERILSAAIAT--RTERRSGLAALFSS 606 RA++ L + ++ L+ A+ T+R + L Sbjct: 969 RAKKILVMVGTKKALAYAVRNVTVTKRNTLLKERLQD 1005 >UniRef50_A5CCM9 Helicase RecD/TraA, ATP-dependent exoDNAse (Exonuclease V) n=2 Tax=Orientia tsutsugamushi RepID=A5CCM9_ORITB Length = 731 Score = 431 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 140/618 (22%), Positives = 231/618 (37%), Gaps = 91/618 (14%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL 58 QL+ ++ + D A + E+ + A L L G G +P +L Sbjct: 192 SNPYQLVSDIKGIGFKSAD-NIAKAIGIPENSMMRARAGLNYALVTAMGNGSCGMPTDKL 250 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 N + ++ + L S ++ + I + ++L + E Sbjct: 251 INLCHELLNI--------DVSIIIDAL--SFEINERNVAVENINGEECIFLKGLAYAELK 300 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTG 176 +A ++ + + + + + Q+ A AL ++ +I+GGPG G Sbjct: 301 IAELLVHISKGKLAWNPISSNKITEYISNANIKLSPSQQDALNQALKSKVMIITGGPGVG 360 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTT + ++ L E I LAAPTG+AA RL+E+ Sbjct: 361 KTTLINSIINILK----SEGVVILLAAPTGRAAKRLSEATQH-----------------P 399 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 A T+HRL+ ++PG L +L++DE SM+D+ M I ALP A + +G Sbjct: 400 AHTIHRLVYSRPGQDVRTITK---LKCQLLILDEMSMVDVTTMYAAISALPSTAALFLVG 456 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV G V D+ + L Sbjct: 457 DIDQLPSVGPGQVFSDLIKSQKFP-------------------------------IVTLT 485 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVK--TVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 + +R + S I A IN G ++ DF I + D I Sbjct: 486 EIFRQNNQSSIISNAHRINNGFFPILQSSQNSNNDFYFINSDTPEDAIDKIT-------- 537 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM---QQKRKIHRH 471 +L+Q R I F + Q+L + G G LN +++ + Sbjct: 538 -----ELVQVRLPKKFSISPFTDIQILSPITRGIVGTKNLNSVLQKVLLPSNSANDELLI 592 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHE 531 + + G VM N+ ++NGDIGI + DGN S + E Sbjct: 593 WGNIFKIGDKVMQVVNNYDKDIYNGDIGIINTIDHENQNIVINFDGNKISYDFDEIDEIV 652 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +A+T+HKSQG E+ + L Q P++ R+L+YTA+TRA++ + + ++ L+ AI Sbjct: 653 LAYAITIHKSQGGEYHTVIIPLMMQHYPMLQRKLIYTAITRAKKLVIVVGQKKALNIAIK 712 Query: 592 TRTE--RRSGLAALFSSR 607 R S L Sbjct: 713 KNIAELRYSMLKKKLMDI 730 >UniRef50_A6L5S1 ATP-dependent exonuclease V, alpha subunit-helicase superfamily I member n=7 Tax=Bacteria RepID=A6L5S1_BACV8 Length = 753 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 149/611 (24%), Positives = 240/611 (39%), Gaps = 89/611 (14%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVT---LAAALLSHDAGEGHVCLPLSRL 58 + +L + + + D A + +++ L+ A EGHV +L Sbjct: 178 ENPYRLADDIWGIGFKTADS-IAAKMGYEKNDLRRCKSGIIYTLNQLANEGHVYAEEEQL 236 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 +A++ + + L + +YL + E Sbjct: 237 VQAALELLEADEAPIR--------------EALNNMVQTDDLKLEDEAIYLPPFYFAEVG 282 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTG 176 + E + + L + + Q A A+ ++ V++GGPGTG Sbjct: 283 TTNRLQALLRESEQNLFAKKVDVQALSKETGIEYDEVQLQAIEEAIRSKVMVLTGGPGTG 342 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTTT ++AAL M RI LAAPTG+AA R++E+ G + Sbjct: 343 KTTTTQGIIAALKHM----GLRILLAAPTGRAAKRMSEATGM-----------------E 381 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 + T+HRLL P + + NPL D L+VDE SMID+ +M+ L+ A+P RV+F+G Sbjct: 382 SKTIHRLLEFNP-KDGYKRNDENPLEGDALIVDECSMIDIILMNNLMKAIPSSMRVVFVG 440 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV AG VL DI + L Sbjct: 441 DIDQLPSVGAGNVLRDIIESEKIP-------------------------------VIRLT 469 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 + +R S I A AIN+G Q DF I++ + + I Sbjct: 470 RIFRQAQTSRIVMSAHAINQGRFPDTSNGKQTDFFFIQQEEPEKVAEEI----------- 518 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW 476 ++L++ R P Q + Q+L ++ G G A LN ++ + + + Sbjct: 519 --VNLVKNRL-PKAYSQGVSNIQVLTPMQRGVVGAANLNMALQNALNPSQIALNRGGYSF 575 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 +G VM RN+ +FNGD+G R + + S L E +A Sbjct: 576 RQGDRVMQLRNNYDKDVFNGDLGYVESVDMEERTLLVNFEERQVEYEASELDELTLAYAT 635 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT-- 594 T+HKSQGSE+ + + ++ R LVYT +TRA++ L ++ LS AI + Sbjct: 636 TIHKSQGSEYPIVVMPVLMTHYVMLQRNLVYTGITRAKKICVLIGTKKALSFAIRNMSVL 695 Query: 595 ERRSGLAALFS 605 +R + L + Sbjct: 696 KRNTKLKERLN 706 >UniRef50_D1NBM8 Helicase, RecD/TraA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBM8_9BACT Length = 734 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 151/621 (24%), Positives = 234/621 (37%), Gaps = 104/621 (16%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 K +L E V+ D + L +A D + AA ++ G GHVCLPL+ L Sbjct: 185 KNPYRLAEEVDGIGFLKADEIARNLGIAPDSIDRLAAAAVFSVNTLVGNGHVCLPLAELV 244 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT- 118 + +E G E L + D +Y ++ E Sbjct: 245 RQTSELAKQPPAQAEAGIEAAIERRL--------------LRKLDDMIYTPQLARAETEL 290 Query: 119 ---------VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVI 169 V +F + H + D ++ Q+ A +S+I Sbjct: 291 PELVASLALVKKFAGQRMHPVPGDNGIV------------LNQEQQRAVDEVSLVPLSII 338 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 +GGPG GKTT V +++ A+ RI LAAPTG+AA RL++S G Sbjct: 339 TGGPGVGKTTVVGEIVR----RAEAAGLRIGLAAPTGRAAKRLSDSTG------------ 382 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 A TLHRLL P S R + + +PL +D+L+VDE SM+D+ + L A+ Sbjct: 383 -----LTAKTLHRLLQFDPNSNRFQMDSSSPLEVDLLIVDEVSMLDILLALALFRAVRPG 437 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 V+ +GD DQL SV G VL Sbjct: 438 TSVVLVGDADQLPSVGPGTVLAGFLESEW------------------------------- 466 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 + L + +R +S I A +NRG Q +D + +A++E Sbjct: 467 FQVTRLVQIFRQAENSHIITNAHRVNRGLLPEKPQPGSQALSDFYWIEQDDPDKALAVIE 526 Query: 410 EALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKI 468 + ++ R ++ Q+L + G G +NER++ + + Sbjct: 527 K----------MVAERIPARFHFDPVDDVQILTPMNRGSCGTVAINERLQALLNPGDKPE 576 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRL 527 R + G +M N+ +FNGD+G + + Sbjct: 577 FRFGDRVYRAGDKLMQTANNYEKNVFNGDLGRLGRISLKDKTFTVIFEGSRLVEYNFDEA 636 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 + +A+TVHKSQGSEF L SQ ++ R L+YTA+TRAR+ L L R + Sbjct: 637 DQLTRAYAITVHKSQGSEFPVVILPFLSQHYMMLQRNLLYTAMTRARKLLILVGSRRAVQ 696 Query: 588 AAI--ATRTERRSGLAALFSS 606 A+ A R S L ++ Sbjct: 697 MAVDNARLEPRFSLLTQRLAA 717 >UniRef50_B0S3H7 ATP-dependent exodeoxyribonuclease alpha subunit n=2 Tax=Finegoldia magna RepID=B0S3H7_FINM2 Length = 743 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 146/625 (23%), Positives = 234/625 (37%), Gaps = 97/625 (15%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLS 56 M+ L++ + R D+ A + + + AA G+ + Sbjct: 174 MQNPYTLIDDIRGIGFRTADI-IAQRIDIEPDSPFRIKAAFKYFMEKEANSNGNCYVLED 232 Query: 57 RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 L EI Q E L+ S ++ D +R+YL ++ +E Sbjct: 233 DLIEGVEKLL-----DIEIKNRQETLESLIVSGIIAIDDTD-----DENRVYLPQIEKSE 282 Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 A + DE + L KL + Q A ++T ++ +I+ G Sbjct: 283 MRCAMNIANILKTEIEDEFDVEYELSKL-ESEHLDDLQIEAIKKSMTEKMLIIT----GG 337 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T ++ + ++ I LAAPTG+AA RL+ES E+ Sbjct: 338 PGTGKTTIINNITKIFKNNDKEIILAAPTGRAAKRLSES-----------------CNEE 380 Query: 237 ASTLHRLLGAQP--GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 A T+HR+LG P H NP+ D++++DEASM+D+ + L+ AL + RV+F Sbjct: 381 AKTIHRILGYIPVEDGTIFDHDEDNPIDCDLIIIDEASMMDIFIADSLLRALDSNTRVVF 440 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL SV+AG VL D+ Sbjct: 441 VGDCDQLPSVQAGNVLNDLIECGEIT-------------------------------TIK 469 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L K +R +S I A IN G+ + +DF IE+ + + I Sbjct: 470 LTKIFRQAQNSNIIVNAHRINNGEFPILNEK-GKDFFFIEENDPERAKQTI--------- 519 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR---KIHRH 471 LDL R F++ +L +++ G LN +++ + K + Sbjct: 520 ----LDLCAQRLPNFYKKDEFDDIIVLTPMKKSSCGTKELNTALQEVLNPKTPMTEEIEQ 575 Query: 472 PHSRWYEGRPVMIARNDSAL--------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQ 523 + VM +ND G+FNGDIG + D S Sbjct: 576 RDRIFRLNDKVMQIKNDYTKEFIDDDAMGVFNGDIGRVTYVDPIDETVDVLFDDKTASFT 635 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 ++A+T+HKSQGSEF + + ++TR L+YTA+TRAR + L Sbjct: 636 KKECDGLTLSYAITIHKSQGSEFPIVVIPVTQAPFMLLTRNLLYTAITRAREIVVLVGSL 695 Query: 584 RILSAAIATRT--ERRSGLAALFSS 606 +IL I+ +R SGL Sbjct: 696 KILRQMISNNKIMKRNSGLDRRIKQ 720 >UniRef50_B2JBK4 Exodeoxyribonuclease V, alpha chain n=2 Tax=Nostocaceae RepID=B2JBK4_NOSP7 Length = 705 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 130/615 (21%), Positives = 226/615 (36%), Gaps = 76/615 (12%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTL-AAALLSHDAGEGHVCLPLSRLE 59 QL + D + F L VA D +L+ A +GH LP +L Sbjct: 148 SNPYQLAADIYGIGFLRTDKIAFNLGVAPDSQFRYRAGLIHVLNEAAADGHCYLPQPKLI 207 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 N A E L + + + + R +LC YL + E+ + Sbjct: 208 ENVIKLLTTADHTPEEDALADIIKDMALKDDLIREKSEDQTLLC----YLPTYFHTEQNL 263 Query: 120 ARFFN-EVNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTG 176 A+ + D + +++ Q++A +A R+ +++GGPG G Sbjct: 264 AQLIQSRFCQPVAQDMPRVRAWIERFTKSRKIKLSPQQRLAVEMAAYSRVMILTGGPGCG 323 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KT T +++ + I LAAPTG+AA RL++ + Sbjct: 324 KTFTTQIIVS----LWKAMGKSIALAAPTGRAAQRLSQIT-----------------QLE 362 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 A T+H LL P + NPL +V EASM+DL + S L+ A+ ++++ +G Sbjct: 363 AKTIHCLLEFDPKTMGFLRDNQNPLPHTAIVALEASMLDLFLASSLVKAIQYGSQLLLVG 422 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV G L D+ + + L Sbjct: 423 DIDQLPSVGPGQFLSDLINSGHVP-------------------------------VVRLT 451 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 K +R S I A INR ++ + ++ + Sbjct: 452 KVFRQAQQSAIIIAAHQINRSQFPTIEPISDNPVSECLWHGGGHHPKHGV---------- 501 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRHPH 473 + + + P L + Q+LC + G G LN ++Q + + Sbjct: 502 KAISEIITDLIPRLGYNLATDVQVLCPMSRGLLGTRNLNTVLQQLINPPSPDKVEITRGG 561 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 + EG ++ ND +FNGD GI + + L + + Sbjct: 562 NLLREGDRIIQLTNDYNHEVFNGDFGIIKAIDPEEMEVTVQYGKHTVVRTGADLNQIALS 621 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 W++T+H+SQGSE+ L + +Q +++R+ YTA+T A++ + ++ +S A+ + Sbjct: 622 WSLTIHQSQGSEYPVVILPIYTQPYMMLSRKQFYTALTCAKQLAIVVGSKKAISKALRSS 681 Query: 594 --TERRSGLAALFSS 606 R + L S Sbjct: 682 DGQLRYTRLQQRLES 696 >UniRef50_B8FBC1 Helicase, RecD/TraA family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FBC1_DESAA Length = 730 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 134/611 (21%), Positives = 225/611 (36%), Gaps = 76/611 (12%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL---SHDAGEGHVCLPLSRLEN 60 +L E V D A + L A +L S + GH LP L + Sbjct: 178 PYKLAEDVAGIGFSTADG-IARKMGIPADSPKRLEAGVLHALSRASNNGHFYLPREELIH 236 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 AS + W+ + ++ E I +YL + E +A Sbjct: 237 EAASLLDQNPSDVDNILSGMWQTGKVIFDKITDDPENPLDI-----VYLTAYYATEVGLA 291 Query: 121 RFFNEVNH-AIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGK 177 R + + + + L+++ Q RISVI+ G Sbjct: 292 RRIQAFLTVPLNLKKIKAEEALERVHQRFAIRLSEEQLDVLEKIFGSRISVIT----GGP 347 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 T L+ ++ + + APTG+AA RL E + DA Sbjct: 348 GTGKTTLVRSVQLLFSAMGKSVLQVAPTGRAAKRLAEVTSR-----------------DA 390 Query: 238 STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 ST+HR L + + + PL DV++VDEASM+D +M LI A+P +A +I +GD Sbjct: 391 STIHRALAYDFKTGKFFRNEEEPLDADVIIVDEASMVDAFLMYHLIKAIPMNAVLILVGD 450 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 QL V G L DI + L K Sbjct: 451 VSQLPPVGPGNALRDIIESGQVP-------------------------------VFHLTK 479 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 +R + S I + A +N G+ ++ D E ++++ Sbjct: 480 IFRQAAQSLIIRNAHRVNAGEDLVTVRDQSKEDPDFYFLSENDQERMVSLV--------- 530 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 L + + R + Q+L + +GP G LN ++++ + + + Sbjct: 531 -LTMCRERIPNRFGFDPMTQIQVLTPMHKGPAGTINLNRQLQKILNPGPDLITRGEQCFR 589 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 G VM +N+ + +FNGDIG + ++ D S + E +A++ Sbjct: 590 AGDKVMQIKNNYSKEVFNGDIGAITNVSPSSKSVVVEFDAGPVPYTFSEMEELVLAYAIS 649 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--E 595 +HKSQGSE+ ++L + ++ R LVYT +TRA+R + L ++ +S A+ T Sbjct: 650 IHKSQGSEYPAVIMLLSTAHYALLQRNLVYTGITRAKRLMVLVGSQKAVSLAVGNDTPSR 709 Query: 596 RRSGLAALFSS 606 R + LA Sbjct: 710 RATRLAHRLRQ 720 >UniRef50_C7LVF6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVF6_DESBD Length = 588 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 238/608 (39%), Positives = 312/608 (51%), Gaps = 30/608 (4%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHP----AVTLAAALLSHDAGEGHVCLPLSRLE 59 L D+ A A V AL+S EGHVCL L Sbjct: 5 PAILPRLAASTLFSEADLYQARFAASLAREGHANLVAGLTALVSLAVREGHVCLHL---- 60 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 +E LA + + V P+IL G+RLY +R + +E + Sbjct: 61 GDEGVRERLAALGLDGTHACQL------TGVVGAPGSGLPLILDGERLYFSRFFRDEEAL 114 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKT 178 AR F + A D + A L +F DE +WQ VA AL R+ VISGGPGTGKT Sbjct: 115 ARAFMRLAGAPPRD--IPADLLPDIFKTKGDETDWQDVACFAALRSRLCVISGGPGTGKT 172 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TTVA++LA +M G RIRLAAPTGKAA+R+TE+L +A + E + + A Sbjct: 173 TTVARILALASRMHTGANFRIRLAAPTGKAASRMTEALAEAFPEGSQLPELNACLAQGAQ 232 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLLG G RH GNPL LD+LVVDEASM+DL + +RL+DALPD A ++ LGDR Sbjct: 233 TVHRLLGWSSGG--FRHCQGNPLPLDMLVVDEASMLDLELAARLMDALPDEASLVLLGDR 290 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 +QLASVEAGAVL ++C + + G TG L D + L+KS Sbjct: 291 NQLASVEAGAVLANLCREDIVNAFSPDFTAYAAKAGAQGLTATGIPV-PLTDHVVELKKS 349 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +RFG SGI L+ I G + + TD+E + A L L R Sbjct: 350 WRFGQHSGIAALSTLIRDGQAQMAGELLVEGRTDLEMLPCTGQANLTATLTPLLREAFRG 409 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 L +P + F +LL +R+GP G LN + + + + WY Sbjct: 410 LG---GTTDPTRAFEIFGTLRLLSPVRKGPRGTEALNRLAREALHESASNY------WYP 460 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 GRPVMI ND LGLFNGD+GIAL RV+FA +G ++S P+RLP HET +AMTV Sbjct: 461 GRPVMILENDYNLGLFNGDVGIALHVEGTLRVFFAGTEG-LESHSPARLPRHETCYAMTV 519 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598 HKSQGSEF H LILP + PV+ REL+YTA+TRA++R +L + AI + R S Sbjct: 520 HKSQGSEFGHTVLILPEEPCPVLGRELLYTALTRAKKRFTLLGTAEQVKDAIESPARRDS 579 Query: 599 GLAALFSS 606 GL + +S Sbjct: 580 GLGEMLTS 587 >UniRef50_UPI00016C4690 helicase, RecD/TraA family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4690 Length = 777 Score = 427 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 152/637 (23%), Positives = 254/637 (39%), Gaps = 99/637 (15%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL 58 +L + + D Q A+++ AA+ L + G GHV P L Sbjct: 204 ANPYRLSGDIWGFGFKTAD-QLAVSLGIPPDSPFRAQAAVRHVLQEETGNGHVGFPEELL 262 Query: 59 ENNEASHPLLAT--CVSEIGELQNWEECLLAS----------------QAVSRGDEPTPM 100 A + + + +L+ +E + S Q+ G + P Sbjct: 263 REKAAELTGIEPNGIIDAVEQLRITDEIVRDSVGKATGGKVNAPPPQPQSPGEGPDGEPA 322 Query: 101 ---ILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS---DEINWQ 154 I D L+L M+ E VAR + ++ + Q Sbjct: 323 KVRISEEDLLFLKPMFLAEVGVARSIRALAAGPHPLPSVNVEAAVNWIEQKMGIAFATSQ 382 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 + A A+T ++ V++ G T ++ A+I+M + R+ L APTG+AA RL E Sbjct: 383 RAAIKAAVTNKMMVVT----GGPGTGKTTIVRAIIEMFLAKSLRVLLTAPTGRAAKRLNE 438 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 S G+ +A T+HRLL P ++ +A NPL +D+LVVDE SM+ Sbjct: 439 STGR-----------------EAKTIHRLLEFNPQQRQFTRNAENPLDVDLLVVDETSMV 481 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG 334 D+ +M+RL+ A+P +A V+ +GD DQL SV AG+VL D+ Sbjct: 482 DVVLMNRLLQAVPPYACVVLVGDVDQLPSVGAGSVLTDLIDSKVVP-------------- 527 Query: 335 THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA-VKTVFQQDFTDI 393 + L + +R S I + A AIN G + DF + Sbjct: 528 -----------------VARLTEVHRQAESSWIVRAAHAINSGQEPQSAPAGGDGDFYFV 570 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 E + R + +++ R + F + Q+L + GVA Sbjct: 571 EANDADTV-------------IQRVVQMVKERIPARFNLNPFRDIQVLSPQVKTALGVAN 617 Query: 454 LNERIEQFMQQKRK---IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV 510 +N ++Q + R + + G VM +N+ +FNGDIG ++ Sbjct: 618 MNRELQQALNPARPGLAEVQRNGETYRIGDKVMQVQNNYDREVFNGDIGRIDAIDTDEQM 677 Query: 511 WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAV 570 DG + S L E + ++A T+HKSQGSE+ + + +Q ++ R L+YT + Sbjct: 678 LVVDYDGRFVEYEFSDLDELQLSFACTIHKSQGSEYPAVVIPVHTQHFVMLQRNLLYTGI 737 Query: 571 TRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 TR R+ ++L + + A++T +R S L Sbjct: 738 TRGRKLVALVGSRKAMRIAVSTADTKKRFSLLKWRIK 774 >UniRef50_C6NU54 Exodeoxyribonuclease V alpha chain n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU54_9GAMM Length = 654 Score = 427 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 214/649 (32%), Positives = 313/649 (48%), Gaps = 57/649 (8%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 ++ K L + + PL+ A +A D P + AA+ H G GH L + Sbjct: 10 RILKLLDDWHRAGWIGPLEPALARWMAERDPDIAPELLFLAAITVHLEGLGHTSLDVPAF 69 Query: 59 ENNEASHPLLATCVSEIGE---------LQNWEECLLA------------SQAVSRGDEP 97 + E E + W+ L+ +S+ Sbjct: 70 LAQPLYYLDWPEQAGEALEEFLAAMGSGPEAWQAALIRGGRMLAQYHDRTPPNISQRGPE 129 Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDEINWQ 154 TP++ G RLYL R + +E + R + + TL +LF S + Q Sbjct: 130 TPLVWDGRRLYLRRHFRDEWEIDRQLQSRVGTTVAYFSEGSATLTRLFGPASSSSAGDGQ 189 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL-- 212 ++A A+A R ++I+GGPG+GKT T+A+LL L+Q A R+ LAAPTGKAA R+ Sbjct: 190 RLACALAAERGFTLITGGPGSGKTYTIARLLVLLMQAA---PRRVALAAPTGKAALRMDT 246 Query: 213 --TESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 +S+ +R+ R A TLHRLLGA+PG++RLRH A PL+ D+LVVDE Sbjct: 247 ALRQSVDDFVRRGDDDLADLLRQVPPAQTLHRLLGARPGTRRLRHDAHRPLNFDLLVVDE 306 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 ASMI +M+ L+ A P +++I LGD DQLASVEAGAVL +IC A Sbjct: 307 ASMIQHDLMAALLRATPARSQLILLGDPDQLASVEAGAVLAEICRGRAVYSPATAEDLKR 366 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 R +A++L +++ L SYRF D I +LA AI GD V + Sbjct: 367 RWGIALAADSLRDDASALEEAVVRLSSSYRF--DGPIAKLATAIRSGDAECVIDLLAAST 424 Query: 391 T-------DIEKRLLQSGEDYIAMLEEALAGYGRYLDLL-----QARAEPDLIIQAFNEY 438 T I+ R +++ + E L+ + + ++ A + + Sbjct: 425 TVEGSALGWIDPRAGAGRANFLELAERTWRSTQARLEQVPSGETEHATWVRELLAAADTF 484 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 ++LCALREGP+GVAG+N ++ ++ WY GRPV++ RND G++NGD+ Sbjct: 485 RILCALREGPWGVAGINAQMAAQLRPPG-----YSGDWYPGRPVLVQRNDPIAGVYNGDL 539 Query: 499 GIALDRGQGTRVWFAMPDG---NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 G+ L QG R+ P G + P RL + + +A+TVHK+QGSEF LILP Sbjct: 540 GLVLPDTQG-RLQVYFPRGPQLAPLRLHPQRLGDATSAYALTVHKAQGSEFQRVLLILPP 598 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 + +PV++REL+YTAVTRARR LS + R SGLA Sbjct: 599 EDSPVLSRELLYTAVTRARREFIAVTPLETLSRILGRHGRRMSGLATRL 647 >UniRef50_D2S7J1 Helicase, RecD/TraA family n=15 Tax=Actinomycetales RepID=D2S7J1_9ACTO Length = 754 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 158/622 (25%), Positives = 252/622 (40%), Gaps = 93/622 (14%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA-LLSHDAGEGHVCLPLSRLENN 61 +L V R D + A+ + D V +LS G+GH LP + L Sbjct: 186 PYRLAAEVWGIGFRTADTIAAAVGIPHDSPHRVEAGVQFVLSEATGQGHCFLPETELVAQ 245 Query: 62 EASHPLLAT-CVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 + V L ++ ++ + RG EP + YL E ++A Sbjct: 246 AVEVLQVPAGLVGHCLALLVADQGVIREELPGRGGEPATAV-----YYLVPFHRAEISLA 300 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVS--------DEINWQKVAAAVALTRRISVISGG 172 + A +VD ++D +S + Q+ A +ALT R++V++GG Sbjct: 301 AGLRRLVDA-DVDRMPAFASVDWTAALSWLGRRTGVELAAGQQAAVRLALTERVAVLTGG 359 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 PG GK+ TV ++ +A + RI LAAPTG+AA RLTE G Sbjct: 360 PGCGKSFTVRSIVT----LAAAKGARIVLAAPTGRAAKRLTELTG--------------- 400 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 +A T+HRLL +PG PL D++VVDE+SM+DL + ++L+ A+P A + Sbjct: 401 --VEAVTVHRLLELRPGGD-AAFDRDRPLEADLVVVDESSMLDLLLANKLVRAVPPGAHL 457 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV AG VL D+ A Sbjct: 458 LLVGDVDQLPSVGAGEVLRDLLAEGTP------------------------------IPH 487 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L + +R S SG+ A +N G V+ + + ++ ++A Sbjct: 488 VRLTEVFRQASRSGVVTNAHRVNAGSFPQVRGL---------------DDFFLFSTDDAE 532 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM---QQKRKIH 469 +D++ R + + Q+L + GP G A LNE +++ + + R Sbjct: 533 EAARLTVDVVVRRIPARFGLDPRRDVQVLTPVHRGPAGAAVLNELLQEALTPARPDRAEK 592 Query: 470 RHPHSRWYEGRPVMIARNDSALG---LFNGDIGIALDRGQGTR-VWFAMPDGNIKSVQPS 525 R + G V RND G +FNG G+ + + +G Sbjct: 593 RFGGRVFRVGDKVSQIRNDYDKGANGVFNGTQGVVTAIDPVEQTLTVVTDEGEQIPYDFG 652 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 L E +A+TVH+SQGSE+ + + + ++ R L+YTAVTRA++ + L R Sbjct: 653 ELDELVHAYAVTVHRSQGSEYPCVVIPVTTSAWMMLQRNLLYTAVTRAKQLVVLVGSTRA 712 Query: 586 LSAAIA--TRTERRSGLAALFS 605 L A+ R + LA Sbjct: 713 LGQAVRVTGSGRRHTALAHRLR 734 >UniRef50_Q15V09 DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V09_PSEA6 Length = 737 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 247/710 (34%), Positives = 350/710 (49%), Gaps = 116/710 (16%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAGDEHPAVT----------LAAALLSHDAGEGHVCLP 54 L + ++RPLDV FA + E + L AA LS GE CL Sbjct: 32 SILQSLLSVGRIRPLDVAFAEFIMLHERNKLAVNTAGIHALGLLAAYLSSRLGEQDSCLN 91 Query: 55 LSRLEN------NEASHPLLATCVS----------------------------------- 73 L S P+L + + Sbjct: 92 LDGFYQPFLPFYRFDSAPVLMSILEASSCVSVVEEPRFNQASDAVAGSDTRSDTGNNTSS 151 Query: 74 --------EIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE 125 + Q + L QA + P+IL G LY+ R W E +A N Sbjct: 152 HDRYSSAQHLPAQQLSAKQLHTHQAQEHQSQSKPLILQGHELYMQRYWQYEVQLAEKINS 211 Query: 126 VNHAI-EVDEALLAQTLDKLF-------------------------PVSDEINWQKVAAA 159 + +D L +LF EI+WQKVA Sbjct: 212 MTGRTSTLDIEQGRALLGQLFVSAPDDVGDERDLNDVNRQSGHGHAQREPEIDWQKVAVC 271 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR--IRLAAPTGKAAARLTESLG 217 +A ++ +SVI+GGPGTGKTTTV +L+A L +A + + I+LAAPTGKAAARL++S+ Sbjct: 272 LAASQSVSVITGGPGTGKTTTVIRLMALLQGLARHKGKKLQIKLAAPTGKAAARLSQSIS 331 Query: 218 KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLP 277 A+ +LP D K +P ST+HRLLG+ P S R + +PLH+DVL+VDEASM+DLP Sbjct: 332 AAMDKLP--DALKPDLPSQCSTIHRLLGSIPNSPYFRFNQQHPLHVDVLIVDEASMVDLP 389 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA---------NAGFTAERARQ 328 +MS+L ALP HA+++ LGD+DQLASVEAG+VL DIC+ A + +++A Sbjct: 390 LMSKLFAALPRHAKIVLLGDKDQLASVEAGSVLSDICSAALNFSPTVFNQSPPYSDQALG 449 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 + + A + +SL LL KSYRF SGIG+LA AIN G K +F Sbjct: 450 VVKDLCQIELNINTLNKAPISNSLALLHKSYRFSEKSGIGRLARAINMGRLANAKALFSD 509 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD-------LIIQAFNEYQLL 441 D + + Q+ +D A++ L Y RY + ++ + + Q+L Sbjct: 510 DVY--QDVVWQTSDDPKALVNRLLPDYQRYFERVRQVCARGTLSTQGIEVFALLQQQQVL 567 Query: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 CA +E +GV +N IE + + I +Y GRPVM+ +ND +LGLFNGDIGIA Sbjct: 568 CAQKEASWGVKQMNVLIESELNKHGAIEL--GRDFYIGRPVMLKQNDHSLGLFNGDIGIA 625 Query: 502 LDRGQGT---RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP---- 554 + + +VWF ++ V PSRLP H+T +AMT+HKSQGSEFDH L LP Sbjct: 626 MPDEENEGLMKVWFVTEQNTLRGVLPSRLPPHDTVYAMTIHKSQGSEFDHVYLCLPRIET 685 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 + +++REL+YT +TRA++ +LY+DE+ LS ++A R +R SGLA Sbjct: 686 RSQARLLSRELLYTGLTRAKKSFNLYSDEQALSISVARRCQRGSGLAKRL 735 >UniRef50_P45158 Exodeoxyribonuclease V alpha chain n=19 Tax=Pasteurellaceae RepID=EX5A_HAEIN Length = 640 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 230/649 (35%), Positives = 336/649 (51%), Gaps = 56/649 (8%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDE---------HPAVTLAAALLSHDAGEGHVCL 53 + L + E + L D FA +A + L AAL S +G+ C Sbjct: 1 MLSVLHKLKELRILSQGDYYFAKLIADKQCHTDYAEPVKNLAILLAALCSWRYTQGNTCS 60 Query: 54 PLSR--------LENNEASHPLLATCVSEIGEL--QNWEECLLASQAVSRG--DEPTPMI 101 L R L LA +IG L ++W+ L A ++ ++ PM Sbjct: 61 QLDRYLEHNLFGLAYRTTEEDYLAEIHEKIGYLPVEDWQNALCGHMAFTQDPVNQIAPMA 120 Query: 102 LCGDRLYLNRMWCNERTVARFFNEVNH---AIEVDEALLAQTLDKLFPVSDE-INWQKVA 157 LY R W +E + ++ + + Q L+K FP E +WQKVA Sbjct: 121 FQFGALYFYRAWQDEYRIVQYIKNTLKKYRTLAFSYDEIHQKLEKYFPEKQEKTDWQKVA 180 Query: 158 AAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG 217 A A+ S+I+GGPGTGKTTTV +LL L ++ D + I+L APTGKAA+RL ES+ Sbjct: 181 VATAIKSPFSIITGGPGTGKTTTVTRLLLVLQELFD-CKLHIKLVAPTGKAASRLEESIK 239 Query: 218 KAL----RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273 AL ++ ++ IP+ ASTLH LLG + R+++ NPL LDVLVVDE SM Sbjct: 240 NALGFMQEKMNVSHSLFNAIPQKASTLHSLLGVNAFNDYTRYNSHNPLQLDVLVVDETSM 299 Query: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLT 333 IDLPMM++LI+AL R+I LGD+ QLASVEAGAVLG++ + ++ E+A L T Sbjct: 300 IDLPMMAKLINALKPETRLILLGDQAQLASVEAGAVLGELAQFVTQPYSHEQAAYLLATT 359 Query: 334 GTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDI 393 G V + +RD LC L +S RF DSGIG+L+ I +G +F ++ Sbjct: 360 GYKVEGSDCS--NPIRDCLCHLTESRRFDKDSGIGKLSEFIQKGKADDSLELFDHYPQEL 417 Query: 394 EKR-LLQSGEDYIAMLEEALAGYGRYL----DLLQARAEP-----------DLIIQAFNE 437 L G+ +++ A+ Y +L DL + + +P + I FN Sbjct: 418 HFNSLNDEGDAVNQVVKSAVENYRTFLKMLDDLRKQKIDPNAKNEQGISYAEAIQVQFNS 477 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 + L ALR GV LN+ I +++++ + WY G+P+MI ND + L+NGD Sbjct: 478 VRFLTALRNNNLGVENLNKEIALALREQKLLWFRNEQDWYIGKPIMITENDHNVRLYNGD 537 Query: 498 IGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR 557 IG+ L +VWF + V +R+P HE + MT+HKSQGSEF H ++LP++ Sbjct: 538 IGLCLA---NGKVWF-----GNREVLTNRIPAHEPAFMMTIHKSQGSEFKHTVMVLPTEV 589 Query: 558 TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 PV++RELV+T VTRA++ L+++ADE+I AI +R+SGL L Sbjct: 590 NPVLSRELVFTGVTRAKKELTVFADEKIWKTAIRQTVKRQSGLGKLLED 638 >UniRef50_C3X2X3 DNA helicase n=2 Tax=Oxalobacter formigenes RepID=C3X2X3_OXAFO Length = 624 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 233/592 (39%), Positives = 322/592 (54%), Gaps = 24/592 (4%) Query: 24 ALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE 83 A + + AA +S G+ CL L+ L + E ++ E Sbjct: 35 ASPLDRPGEALLKEAAYRVSLAVSSGNACLALAELAGS-----------GEGVSPESIRE 83 Query: 84 CLLASQAVSRGDEPT--PMILCGD-RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT 140 LLAS V+ +P P+IL GD RLYL+R + ER +A N +VD AL+ Sbjct: 84 TLLASGVVAEAADPGNAPLILDGDERLYLHRYFDYERALAECIAARNVPGKVDAALIRPL 143 Query: 141 LDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 LD LFP +WQK A A+AL ++SGGPGTGKTTTVA LLA L++ R Sbjct: 144 LDILFPSGKGKPFDWQKAAVALALREPFLIVSGGPGTGKTTTVASLLACLLE--TDPENR 201 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I LAAPTGKAA R+ E++ + PL + IP++A T+HRLLG +R HA Sbjct: 202 IVLAAPTGKAAMRMLEAISQRSSLFPL--HMQPLIPKEARTVHRLLGMTGDRGSVRFHAT 259 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC-AYA 317 NPL LD L+VDEASM+DL M SRL ALP HARVI LGD+DQLA+VEAG+V ++ Sbjct: 260 NPLPLDTLIVDEASMLDLAMASRLFAALPAHARVILLGDKDQLAAVEAGSVFSELSGKRV 319 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 + +L+ L + +A L + + L ++YRF DSGIG+LAA I Sbjct: 320 FSEACLADLEKLTGLRPPPSLSSPSGQATPLENRVVWLTRNYRFSEDSGIGKLAADIRMR 379 Query: 378 DKTAVKTVFQQDFT-DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA-RAEPDLIIQAF 435 + E + + Y Y D L+ +P + +AF Sbjct: 380 RSEEALDFLCSGKDASVVWFDTADTEVASRLETTLVTAYRDYFDCLENHPHDPVRVFRAF 439 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 + +++LCA+REGP GV +N I + + + + + W+ GRPVMI RND AL LFN Sbjct: 440 SRFRILCAVREGPCGVKAVNRLIAAHLSKTGRAGQSASADWFAGRPVMIRRNDYALRLFN 499 Query: 496 GDIGIALDRGQGTR-VWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 GD+GIAL G V+F DG +++ PSRL EHET++AMTVH+SQGSEFD AL+LP Sbjct: 500 GDVGIALPDASGRLAVFFPKEDGTFRALSPSRLGEHETSFAMTVHQSQGSEFDSVALLLP 559 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 +Q + V+ RELVYT +TRAR ++++ A + +L+ ++ R SGL Sbjct: 560 AQFSRVLCRELVYTGITRAREKIAVMAPKTVLAESLKNNAVRHSGLPERLRE 611 >UniRef50_Q3B471 DNA helicase/exodeoxyribonuclease V, alpha subunit n=1 Tax=Chlorobium luteolum DSM 273 RepID=Q3B471_PELLD Length = 586 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 235/603 (38%), Positives = 313/603 (51%), Gaps = 44/603 (7%) Query: 17 RPLDVQFALTV----AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 RP+D QF + G + + A+L+S G VCL L + E + Sbjct: 10 RPIDRQFGGFIMRLSTGPGKGVLRVLASLVSRALEGGDVCLDLQSVAGREI---MTGEEH 66 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMIL-CGDRLYLNRMWCNERTVARFFNEVNHAIE 131 I EL + L S VS G P++ G LYL R E +AR + Sbjct: 67 VSIPELPELLDVLSRSGVVSDGGGNLPLVKGRGSLLYLQRYHVAESGLARAILNRCLEPQ 126 Query: 132 VDEALLA--QTLDKLFPVSDEINW--QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 D A L +LFP E Q+ AA AL RR SVI+GGPGTGKTTTV K+LA Sbjct: 127 GDPEKEARTALLLQLFPAESEDGGGMQRAAALQALRRRFSVIAGGPGTGKTTTVVKILAL 186 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 L RI +AAPTGKAA RL+ S+ L TD ++ IP++ASTLHRLL A Sbjct: 187 LAGEDGTGGGRIAMAAPTGKAALRLSGSVRMQKAALHCTDAARRAIPDEASTLHRLLQAV 246 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 PG+ R RH NPL D +VVDEASM+ LP+M AL R+I LGD DQLASVEAG Sbjct: 247 PGTGRFRHGPLNPLPYDTVVVDEASMVALPLMHAFFSALSPSCRLILLGDPDQLASVEAG 306 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 AVLGDICA A ++L S+ +L+++YRF S I Sbjct: 307 AVLGDICAAARLP------------------------GSALHGSVTVLERNYRFDGGSDI 342 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTD--IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 LA A+N G + D + + + + + EE Sbjct: 343 SDLARAVNGGRVEESLGLLAPDRGNGVVLRPPYVGWNERDGVPEELADAIMEGYRPFLEA 402 Query: 426 AEPDLIIQAFNEYQLLCALREGPF--GVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 +P + AF+ +++L A+ +GP GV GLN EQ +++ I P S +Y GRPVM Sbjct: 403 GDPPSALLAFDRFRMLGAIGDGPGLSGVRGLNMAAEQVLRRAGLID--PSSPFYHGRPVM 460 Query: 484 IARNDSALGLFNGDIGIALDRGQ--GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 + ND ++ LFNGD GI + + VWF PDG++++V P RLP+HET +A+T+HKS Sbjct: 461 VRENDYSMRLFNGDTGIVFNDPECDAPLVWFNAPDGSLRAVAPERLPKHETAYAVTIHKS 520 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 QGSEFD ++LP Q +P+++REL+YTA+TRARR + + AD LSAAI T R SGL Sbjct: 521 QGSEFDAVLMVLPRQDSPLLSRELLYTAITRARRSVEIRADPEALSAAIRKGTARVSGLK 580 Query: 602 ALF 604 Sbjct: 581 DAL 583 >UniRef50_D0IXL7 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Comamonas testosteroni RepID=D0IXL7_COMTE Length = 696 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 259/669 (38%), Positives = 353/669 (52%), Gaps = 68/669 (10%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLEN 60 L + LR LD A VA + PA+ +A A+L+ G GH CLPL L Sbjct: 32 LAALERLADAGLLRRLDSALAAFVAAQDAEAGPALLVATAVLAQMEGRGHSCLPLKALAG 91 Query: 61 NEASHPLLATCVSEI---------GELQNWEECLLASQAV-------SRGDEPTPMILCG 104 + + G L +W + L S V D P++L Sbjct: 92 DPNQILAWPKEAERLQQSLWEQLPGRLADWLQALRRSPVVRVVQPGAPAADRGQPLVLLD 151 Query: 105 D---RLYLNRMWCNERTVARFFNEV--NHAIEVDEALLAQTLDKLFPVSDEI----NWQK 155 LYL R W ER+VA + A+ +DE + + L +LF S +WQK Sbjct: 152 GAAPLLYLRRYWDYERSVAAHIAQRTAADAVALDEPRVREWLGRLFSSSAAAANAVDWQK 211 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA-DGERCRIRLAAPTGKAAARLTE 214 +A A+AL +SVI+GGPGTGKT T A+LLA L A D + R+ LAAPTGKAAARL + Sbjct: 212 LACALALRGHMSVITGGPGTGKTYTAARLLALLFATAPDAAQLRVALAAPTGKAAARLKQ 271 Query: 215 SLGKALRQLP------LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 S+ +L +L L E + A TLH LL A+P ++R HHAGNPL +DVL+V Sbjct: 272 SIDSSLLELKEAVGRELDLEALVKRMGAARTLHSLLRARPDTRRFAHHAGNPLDVDVLIV 331 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERAR 327 DEASMI L MM+ L+ ALP AR+I LGD+DQLASVEAGAVLGD+C A G + + A Sbjct: 332 DEASMIHLEMMAALLQALPPTARLILLGDKDQLASVEAGAVLGDLCRDAQRGNYAPDTAA 391 Query: 328 QLSRLTGTHVPAGTGTEAA--SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTV 385 + R+TG +PA A L +L++S RFG IG LA A+N GD + + Sbjct: 392 YVERVTGQSLPAQYLAPARALPLAQHTVMLRESRRFG--GPIGLLAQAVNAGDAPSAMAL 449 Query: 386 FQQDFTDIEKRLLQSGE--DYIAMLEEALAG------YGRYLDLLQA------------- 424 + L + E + A++ A+ G Y Y ++L Sbjct: 450 LRTQTQAGLHAELWAREGGEVEAVVRSAVQGRGGMASYAAYAEVLAQHGQGKGCGFATEA 509 Query: 425 --RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 R ++ AF+ Y+LLCA+R+G +GVAGLN +EQ +Q I + WY GRPV Sbjct: 510 EHRQWVREVLAAFDRYRLLCAVRDGSWGVAGLNRAVEQALQAMGAIRKEG--EWYMGRPV 567 Query: 483 MIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGN-IKSVQPSRLPEHETTWAMTVHK 540 M+ RND+ LG+FNGDIG+AL R+ G + V +RL ET +AMTVHK Sbjct: 568 MVTRNDAQLGVFNGDIGMALPSFADPARLRVYFMQGELLHHVSTARLAHVETAFAMTVHK 627 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAIATRTERRSG 599 SQGSEF+H AL+L +Q V++RELVYT +TRAR+ SL+ + +L +A+ + T+R SG Sbjct: 628 SQGSEFEHTALVLAAQGGNVLSRELVYTGITRARKAFSLWTEVPGLLVSAMGSPTQRSSG 687 Query: 600 LAALFSSRE 608 L + Sbjct: 688 LLGFMERAQ 696 >UniRef50_A4JS83 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Proteobacteria RepID=A4JS83_BURVG Length = 707 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 287/689 (41%), Positives = 362/689 (52%), Gaps = 85/689 (12%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 ++++ L E V LR +D FA +A D H + LAAAL SH G GH CL L Sbjct: 21 QMERLLAEWVACGWLREVDAAFARFLASEAPDAHALLLLAAALASHQLGRGHACLDLQAT 80 Query: 59 ENNEASHPLLATCVSEIGELQN----------------WEECLLASQAVSRGDEPTPMIL 102 + A L + W+ L V G TP++L Sbjct: 81 LADPAFVLSLPPDGPAPRDADAPVMLPSHVLTGVTVAHWQAALGHGDLVGDGAGATPLVL 140 Query: 103 CGDRLYLNRMWCNERTVARFFNEVNHA-----IEVDEALLAQTLDKLFPV---------S 148 G RLYL R W E+ V +E V L L LFP+ Sbjct: 141 TGTRLYLRRYWQYEQRVCDALDERLARSVELADAVPADRLRDALRTLFPLRHTRAEPAGE 200 Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGER-----CRIRLAA 203 +WQK+A A+A SVI+GGPGTGKTTTV KLLA L +A RIRLAA Sbjct: 201 RHPDWQKLACALAARSAFSVITGGPGTGKTTTVVKLLALLQSLALMAGGDGRALRIRLAA 260 Query: 204 PTGKAAARLTESLGKALRQLPLTDE-----QKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 PTGKAAARL ES+ A QLP D + IP +TLHRLLG +P S+R RHHAG Sbjct: 261 PTGKAAARLNESIAGAAAQLPFDDFPQGASVRAAIPVSVTTLHRLLGTRPDSRRFRHHAG 320 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL LDVLV+DEASM+DL MM ++ ALP AR+I LGD+DQLASVEAGAVLG++C A Sbjct: 321 NPLSLDVLVIDEASMVDLEMMHAVLSALPARARLILLGDKDQLASVEAGAVLGELCQRAR 380 Query: 319 AG-FTAERARQLSRLTGTHVPAGTGTEAA-SLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 AG +T + L ++TG V A A +L S+ +L+ S+RF ++SGIG+LA A+N Sbjct: 381 AGHYTPQTQAWLQQVTGEQVGAALVDPAGSALDQSIAMLRFSHRFSAESGIGKLAEAVNM 440 Query: 377 GDKTAVKTVFQQDFTDIEKRLLQSGED-----------------YIAMLEEALAGYGRYL 419 G+ V V+ + D+ D + +A GY YL Sbjct: 441 GEPAEVARVWAHGYADLALLDCSEKPDAVLGALVVDGVADDDVERESADGQARRGYRHYL 500 Query: 420 DLLQARAEP------------DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK 467 L+ P + ++ A E+QLLCALR GP+GV GLN R+E+ + Sbjct: 501 QTLRREQPPSGADQAGFDRWANAVLDAHGEFQLLCALRRGPWGVDGLNRRVERLLHAANL 560 Query: 468 IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGTRVWFAMPD--GNIK 520 I P WY GRPV++ RND LGL NGDIGI L D RV FA D G IK Sbjct: 561 I--APTGEWYLGRPVLVTRNDYELGLMNGDIGITLALPAPDGEMRLRVAFAAGDGSGRIK 618 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL- 579 V PSRL ET +A+TVHKSQGSEF HAAL+LP +PV+TRELVYT +TRARR L++ Sbjct: 619 WVLPSRLQAVETVFALTVHKSQGSEFAHAALVLPDTLSPVLTRELVYTGITRARRFLTIA 678 Query: 580 -YADERILSAAIATRTERRSGLAALFSSR 607 I+ A+ R R SGL+A F +R Sbjct: 679 SAGGRAIIEQAVQMRVLRASGLSAGFDAR 707 >UniRef50_B2A8J3 Helicase, RecD/TraA family n=2 Tax=Clostridia RepID=B2A8J3_NATTJ Length = 726 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 129/618 (20%), Positives = 226/618 (36%), Gaps = 93/618 (15%) Query: 7 LLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L V + D A + E A LL + +G+ L L Sbjct: 185 LAREVFGIGFKTADK-IAREMGVSVDSEERAKAAVVYLLEEKSQDGNTFLKREELIEALK 243 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + ++ + E E+ ++ G+ +Y + E+ +A Sbjct: 244 ELEVENVNLNSVLEELVEEKEIVVENIPE----------AGELIYPAPFFFAEQGIASRL 293 Query: 124 NEVNHAIEVDE-ALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVISGGPGTGKTT 179 + ++ + + + +K Q + V++ G T Sbjct: 294 KRLKDGVDRELFPRIQKIAEKYLEEQANLVLSPEQHQVIKQVPETGLMVVT----GGPGT 349 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 ++ L+ + ++ LAAPTG+AA R++E+ G ++A T Sbjct: 350 GKTTVIKCLMDIFQKAGQKVMLAAPTGRAAKRMSEATG-----------------DEAKT 392 Query: 240 LHRLLGA---QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 +HRLL + + + + PL D+L+VDEASMID +M+ L+ A+ R++ +G Sbjct: 393 IHRLLEFTYDKEEGMKFQRNQDRPLKGDLLIVDEASMIDTILMNNLLKAISPGTRLVLVG 452 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV AG VL DI L L+ Sbjct: 453 DTDQLPSVGAGNVLQDIIESGRIP-------------------------------LVRLK 481 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 + +R +S + A IN G + +DF + + + Sbjct: 482 RVFRQARESMVVVNAHRINEGKFP-ILNAKGKDFYFLPREEPEDV-------------VK 527 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPH 473 + L R N+ Q+L +R GV LN+ +++ + + Sbjct: 528 TIISLCAKRLPNYNGYHPVNDIQVLSPMRRTVTGVENLNQSLQKVLNPPQKNKAEINFGG 587 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVW-FAMPDGNIKSVQPSRLPEHET 532 + + G VM +ND +FNGD GI V G + + L Sbjct: 588 ACYRTGDKVMQVKNDYEKNVFNGDTGIVTKVDAEENVVNVRYGHGEEIAYEGRELDALVH 647 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 + ++VHKSQGSE+ L + +Q ++ R L+YTAVTRA+ + L ++ + AI+ Sbjct: 648 AYCISVHKSQGSEYPVVVLPVTTQHYIMLQRNLLYTAVTRAKSLVVLVGTKKSIGIAISN 707 Query: 593 RT--ERRSGLAALFSSRE 608 + ER + L + E Sbjct: 708 KKTDERNTFLQHRIAVYE 725 >UniRef50_A4SEL8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chlorobium phaeovibrioides DSM 265 RepID=A4SEL8_PROVI Length = 570 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 208/603 (34%), Positives = 301/603 (49%), Gaps = 58/603 (9%) Query: 17 RPLDVQFALTVAGD------EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLAT 70 R D F+ + + + LA ++ + A G VC L+ + + Sbjct: 8 RAPDAYFSRFILRLIGRETCDSLPLRLAVSMAARSAASGDVCFDLASIHETMVEY---QG 64 Query: 71 CVSEIGELQNWEECLLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNEVNHA 129 + +++ L S A P++L RLYL R W E +A ++ Sbjct: 65 NRIAMPSMRDLRSLLYDSGAAVAPGATGPLVLDEKGRLYLYRYWKLEHDLAARLLKMAGH 124 Query: 130 IEVDEALLAQTLD-KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + A + + Q+ A ALT ++++I+GGPGTGKT TV ++L+ L Sbjct: 125 RAPETAASDALSSLRTMGELEAGGMQERAVIAALTGKLTIIAGGPGTGKTATVGRILSIL 184 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 Q G + RI L APTGKAAARL SL + ST+HRLLG Sbjct: 185 RQQEGGRKKRIALCAPTGKAAARLQSSLKAMSGEAGA-----------VSTIHRLLGTIQ 233 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 GS R RH+A NPL LD+LVVDE SMI LP+M+ L+ A+ A +I LGD+ QLASVE+GA Sbjct: 234 GSTRFRHNARNPLPLDILVVDEVSMIALPLMAALVSAMRPEASLILLGDQYQLASVESGA 293 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 VLGDIC+ A + + S+ L KSYRF +S +G Sbjct: 294 VLGDICS-----------------------AAAREPDSPIGASVITLDKSYRFSGESALG 330 Query: 369 QLAAAINRGDKTAVKTVF-QQDFTDIEKRLLQSGEDYIAMLEE-ALAGYGRYLDLLQARA 426 +L+ A+N G+ + + + I + + L+E + GY YL+ Sbjct: 331 RLSMAVNAGNAASALALLMDISVSGISLLPVTGEMAFREELKECIVEGYRPYLEA----E 386 Query: 427 EPDLIIQAFNEYQLLCALREGP--FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 P ++ F +++L ALREGP GV LN +E+ + Q I +Y GRPVM+ Sbjct: 387 TPAGALRHFEGFRILAALREGPGVTGVMKLNRMVEEILLQAGLIDPVED--FYPGRPVML 444 Query: 485 ARNDSALGLFNGDIGIALDR---GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 + ND +L LFNGD GI ++ RV F DG+++++ P RLP HET +AMT+HKS Sbjct: 445 SANDYSLNLFNGDTGIVVEDALHPGRMRVAFMTADGSLRTIAPERLPSHETAYAMTIHKS 504 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 QGSEFDH +ILP +P++TREL+YT +TRAR L + + + A+ T R SGL Sbjct: 505 QGSEFDHVLMILPEAGSPLLTRELLYTGITRARALLEVRGEASVFEEAVKKTTIRLSGLC 564 Query: 602 ALF 604 + Sbjct: 565 DIL 567 >UniRef50_D0YW55 Exodeoxyribonuclease V alpha chain n=3 Tax=Gammaproteobacteria RepID=D0YW55_LISDA Length = 707 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 259/476 (54%), Positives = 333/476 (69%), Gaps = 12/476 (2%) Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 Q LD L P S +NWQKVAAAVALTR+ +VISGGPGTGKTTTV KLLAAL+ Sbjct: 235 QILDTLVPSSFCLNWQKVAAAVALTRQFAVISGGPGTGKTTTVTKLLAALVMENPQHIPN 294 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 I L APTGKAAARLTES+ A++ LP+TDE K IP +ST+HRLLGA PG RHH G Sbjct: 295 IMLVAPTGKAAARLTESITNAVKSLPVTDEIKAHIPTQSSTIHRLLGAIPGRVDFRHHKG 354 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPLHLDVLVVDEASM+DLPMM+RL++A+P HA++I LGD+DQLASVEAGAVLGDIC+++ Sbjct: 355 NPLHLDVLVVDEASMVDLPMMARLLEAMPAHAKLILLGDKDQLASVEAGAVLGDICSFSA 414 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 ++ ++A LS+LTG + + ++ + D LC+LQKSYRF + SGIGQLA AIN G Sbjct: 415 LSYSKQQAEVLSQLTGFDL-SSNTSKTNVVADCLCMLQKSYRFHALSGIGQLAKAINGGR 473 Query: 379 KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEY 438 + V+ V+QQ F DI L + + Y +M+ + + Y YLD ++ P ++QAF + Sbjct: 474 ENKVQAVWQQGFKDINFYPLST-DSYKSMINQIVMFYRNYLDAIEQSQSPREVLQAFAQV 532 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 +LLCALREG FGV GLN+RIE + + KI + WY GRP+MI++ND LGL+NGDI Sbjct: 533 RLLCALREGDFGVVGLNQRIEHELGRIGKIKQSDE-TWYIGRPIMISQNDHGLGLYNGDI 591 Query: 499 GIAL---------DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 GIA+ +V+F M DG +K PSRLPEHET +AMT+HKSQGSEF Sbjct: 592 GIAMLEPNTDIAAGSTPRMKVYFEMSDGEVKGFLPSRLPEHETVYAMTIHKSQGSEFADT 651 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 ++LP +P++TRELVYT VTRA+ RL LY + +++ I T+T R SGL+ L S Sbjct: 652 VMVLPKDYSPILTRELVYTGVTRAKARLYLYGQQEVMARGIRTKTLRASGLSHLLS 707 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 64/194 (32%), Positives = 86/194 (44%), Gaps = 32/194 (16%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVA-----GDEHP---AVTLAAALLSHDAGEGHVCLP 54 + L E LR +D QFA VA D V+LA+A LS + G GHVCLP Sbjct: 1 MLNMLDRLTEQGVLRAIDSQFAKFVARSVTSIDTPEVVQLVSLASAWLSSELGRGHVCLP 60 Query: 55 LSRLENN---------EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGD 105 L+ + E + ++ + Q W E L+ S AVS G +PTP++L Sbjct: 61 LTAEDQQSMGMFGLHGELAQQVVQLLPEALHHPQCWPEVLIQSHAVSDGSQPTPLVLSDG 120 Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEA----------LLAQTLDKLFPVSD---EIN 152 RLYLNR W E++VA + A VD A L Q LD+LFP + Sbjct: 121 RLYLNRYWQFEQSVAGRILAMATAKGVDTAAQALSSHHIDQLQQNLDQLFPRVYHYLLSS 180 Query: 153 WQKVAAAVALTRRI 166 Q A + T R+ Sbjct: 181 LQ--ALRLGETTRV 192 >UniRef50_A9KS02 Helicase, RecD/TraA family n=32 Tax=Bacteria RepID=A9KS02_CLOPH Length = 742 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 140/638 (21%), Positives = 251/638 (39%), Gaps = 109/638 (17%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 + +L E + + D + + + D V L +G GHV LP+ L Sbjct: 177 ENPYRLAEDISGVGFKIADEIASRIGIRTDSDYRVKAGILYNLLLASGNGHVYLPMHSLV 236 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 ++ + L V E +Y + E V Sbjct: 237 GKTCEMLMVEADTVKRHITSL---ALEKKLVVKESGEE-------QHVYSTSFYYMELNV 286 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGK 177 A ++++ + ++ A + L K+ + + Q+ A A+ + +I+ G Sbjct: 287 ANMLSDLSISYDISPAQVETRLAKIEQETNLELDEMQRYAVMEAVRSGLLIIT----GGP 342 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 T + +++ + E + LAAPTG+AA R+ E+ G +A Sbjct: 343 GTGKTTTINTILRFFEAEGMDMLLAAPTGRAAKRMKETTG-----------------YEA 385 Query: 238 STLHRLLGAQPG------SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 ST+HRLL G + NPL DV+++DE SM+D+ +M L+ A+ R Sbjct: 386 STIHRLLELTKGMDDKDGRMSFERNELNPLEADVIIIDEMSMVDISLMHSLLKAITVGTR 445 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 +I +GD +QL SV G VL D+ Sbjct: 446 IILVGDVNQLPSVGPGNVLRDMIESKAFP------------------------------- 474 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 + +L+K +R S+S I A IN G+ + +D+ + + Sbjct: 475 VVMLKKIFRQASESDIIVNAHKINSGEHITLD---------------NKSKDFFLLKRDD 519 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKI 468 + + L P + + + Q+L +R+G GV LN+ ++Q++ ++K Sbjct: 520 VNVIISVIISLVRDKMPKYVNASVYDIQVLTPMRKGELGVERLNQVLQQYLNPSSQEKKE 579 Query: 469 HRHPHSRWYEGRPVMIARNDSAL----------------GLFNGDIGIALDRG-QGTRVW 511 H + EG VM +N+ + G+FNGD G+ + + Sbjct: 580 KEHFGGIFREGDKVMQVKNNYQIAWETKSRYGITIDSGTGVFNGDTGVIKEINLFAEELT 639 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 +G + + S+L E E +A+T+HKSQGSE+ L + S + R L+YTAVT Sbjct: 640 VEFDEGRLVTYPFSQLEELELAYAVTIHKSQGSEYPAVVLPIYSGPRMLFNRNLLYTAVT 699 Query: 572 RARRRLSLYADERILSAAIATRT--ERRSGLAALFSSR 607 RA++ +++ + ++ + I + +R SGL + R Sbjct: 700 RAKQCVTIVGSDNMVQSMIDNESELKRYSGLQSRIMER 737 >UniRef50_D0LH80 Helicase, RecD/TraA family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LH80_HALO1 Length = 768 Score = 421 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 151/621 (24%), Positives = 248/621 (39%), Gaps = 90/621 (14%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTL-AAALLSHDAGEGHVCLPLSRLE 59 + +L + + D + L +A D + +L A +GHV +P L Sbjct: 218 ENPYRLALDIWGIGFKTADSIAQNLGMARDAPERLEAGLIHVLGKLAEDGHVHVPEPNLL 277 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + A + + + L+ +A+ G + L +W +E Sbjct: 278 DTAAGILEVDAMLLPEALDRLETSQLVVCEALGD---------RGTCVSLTFLWQHESDA 328 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSDE---INWQKVAAAVALTRRISVISGGPGTG 176 A + + L F E Q+ AA A+ + V++GGPG G Sbjct: 329 AARYAALVETPMRPRKLDLDQALAAFEAEAELALTAEQRRAALAAVMDKSVVLTGGPGVG 388 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTT V ++ ++ + LAAPTG+AA RL ES + D Sbjct: 389 KTTIVRAIVFLFERL----GRSVTLAAPTGRAAKRLAESTAR-----------------D 427 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 A+T+HRLL QP A NPL DV+++DE SM+D+ +++ L+DA+P A+++ +G Sbjct: 428 AATIHRLLEFQPAGGGFFRSADNPLDSDVVIIDETSMVDIALLAALLDAMPASAQLVLVG 487 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQL SV GAVL D+ A ++ L Sbjct: 488 DIDQLPSVGPGAVLADLIAS-------------------------------RAATVVRLT 516 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAV-----KTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 + +R +S I A IN G + + + DF I + E+ Sbjct: 517 EIFRQARESRIVMAAHEINSGMVPQLAPPQGTSAHRSDFYFISR-------------EQP 563 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKI 468 + +DL+ R + Q+LC + G G LN +++ + ++ Sbjct: 564 VRARETIVDLVAERIPEAFGFDPLADIQVLCPVHRGELGTIALNRALQERLTPAVDEQHQ 623 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-GQGTRVWFAMPDGNIKSVQPSRL 527 + G VM ND G+FNGDIG+ + G+ +V DG + + L Sbjct: 624 VTRGERSYRVGDKVMQLENDYDRGVFNGDIGVIFEIAGERKKVLVDYMDGRVVGYEARDL 683 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 + +A++VHKSQGSE+ L L +Q ++ R L+YTAVTR + + + + + Sbjct: 684 DQLTHAYAISVHKSQGSEYPVVVLPLATQHYIMLQRNLLYTAVTRGKSLVVIVGSAKAVR 743 Query: 588 AAIAT--RTERRSGLAALFSS 606 A+ T R + LA Sbjct: 744 RAVENQTNTARWTWLAERIRE 764 >UniRef50_C6BXI3 Helicase, RecD/TraA family n=5 Tax=Desulfovibrionales RepID=C6BXI3_DESAD Length = 730 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 145/611 (23%), Positives = 239/611 (39%), Gaps = 80/611 (13%) Query: 7 LLEAVEHKQLRPLDV-QFALTVAGDEHPAVTLAAALLSHDAGE--GHVCLPLSRLENNEA 63 L + + D L A D + A E GH+ P +L + A Sbjct: 184 LAYEIRGIGFKTADAMALKLGFAPDSAQRIEAAIIYSLFSVSERGGHMFSPKVKLVEDVA 243 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRG-DEPTPMILCGDRLYLNRMWCNERTVARF 122 +L+ E + + + R E P + ++L + ER + + Sbjct: 244 KML-------GGVDLELISEGIHSLEERKRVRVENLPEQDIDEAVFLMHFYRFEREICKR 296 Query: 123 FNEV-NHAIEVDEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 + + +H V + + L ++ + + Q+ A A + +I+GGPGTGKTT Sbjct: 297 LHGLISHPSPVSREKVEKALPEVESELGFELSDEQREAVFEACVNKFFIITGGPGTGKTT 356 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 ++ L ++ +I+LAAPTG+AA RL+E+ G+ AST Sbjct: 357 ITRAVVMTLKEL----GLKIKLAAPTGRAAKRLSEATGR-----------------QAST 395 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +HR+L P ++ L DVLVVDEASM+D + ++ A+P RVIF+GD + Sbjct: 396 IHRMLQFTPEDGGFYYNEDQKLKADVLVVDEASMLDAQLCLAVLRAVPLTCRVIFVGDVN 455 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL SV G VL D+ +L + Sbjct: 456 QLPSVGPGNVLSDLLQSGQV-------------------------------QSAVLNHIF 484 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R +S I A IN G+ D +S + M+ + Sbjct: 485 RQAQESYIVVNAHRINDGEFPMPHPA-DAPEADFYWIPQESTQKVQDMI----------V 533 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHRHPHSRWYE 478 + R + + Q+L + +G G LN +++ + K + + Sbjct: 534 QTVCERIPERYGLDPMTDVQVLTPMHKGDVGTQKLNAVLQEKLNPGNGKGLKRGFVEYRV 593 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 G V+ RN+ +FNGD+G + A DGNI + S L E +A++V Sbjct: 594 GDRVLQLRNNYEKEVFNGDLGRVMYINTEENELTAEFDGNIVHYELSELDELTLAYAVSV 653 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ER 596 HKSQGSE+ + + SQ ++ R L+YT +TRAR+ L +R + + T +R Sbjct: 654 HKSQGSEYPAVVMPIVSQHYMLLQRNLLYTGLTRARKLAVLIGSKRAFTIGLNNVTAGKR 713 Query: 597 RSGLAALFSSR 607 + L Sbjct: 714 FTNLRHRIKQI 724 >UniRef50_C9RK23 Helicase, RecD/TraA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK23_FIBSS Length = 691 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 149/612 (24%), Positives = 229/612 (37%), Gaps = 85/612 (13%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLSR 57 + L E V D A V + AALL +GHV LP + Sbjct: 157 QNPYMLCEEVWGIGFLKADE-IAQKVGFPKDSPERFQAALLYTLQEASVSDGHVFLPKNV 215 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L + L + E + GD Y ++ E+ Sbjct: 216 LLERTFRNLRLMQDDEGAINTLL--------DEFEKASECGRITREGDDCYFPPLYNAEQ 267 Query: 118 TVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRISVISGGPGT 175 +A E+ L + QK A +AL+R+IS+I+ Sbjct: 268 RIADNIKLRLRYNELSTEGFEDALAQWEREHKFSFDPIQKRAIQMALSRKISIIT----G 323 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T +L ++ +A + L APTG+AA R+ E G E Sbjct: 324 GPGTGKTTILKGILYLARQMEECVSLTAPTGRAAKRMGECCG-----------------E 366 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A T+HRLL P S + N L ++L+VDE SM+D + + L++A P +AR++ + Sbjct: 367 KARTIHRLLEVDPISGKFHRDGDNKLQCNLLIVDEFSMVDTWLAASLLEATPLNARIVLV 426 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL SV AG VL D+ T L Sbjct: 427 GDADQLPSVGAGNVLNDLLRCPKIPST-------------------------------RL 455 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 Q +R + I A+ IN+G + +F + +D IA L Sbjct: 456 QHIFRQAGGNDIADKASKINQGISPSPIE--GTNFHFLPYESADEAKDIIARL------- 506 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 R + I E QLL +R+GP G+ LN ++ + ++ + Sbjct: 507 -------VTRGIKEKIDINTQEMQLLTPMRKGPLGIYELNNFLQDLLNPGKERIKIASGN 559 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 W G VM RN+ +FNGD+GI G+ T+ D +P E +A Sbjct: 560 WSTGDRVMQIRNNYDKNVFNGDVGIIYKIGKDTKKITVFYDDKTVDYEPDEADELILAYA 619 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-- 593 T+HKSQGSE+ ++L S + ++ R L+YTA+TRA+ + + + A+ Sbjct: 620 CTIHKSQGSEYPAVIVVLDSSHSIMLQRNLIYTAITRAKGHVWILSAPGAFYQAVRNNRS 679 Query: 594 TERRSGLAALFS 605 T R + L Sbjct: 680 TRRYTRLTEKLD 691 >UniRef50_B1I2W6 Helicase, RecD/TraA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I2W6_DESAP Length = 688 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 152/604 (25%), Positives = 240/604 (39%), Gaps = 98/604 (16%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHD--AGEGHVCLPLSRLENNEAS 64 L E R D+ +A D V + ++ EGH LP L + + Sbjct: 175 LTELDLIGFHRADDIARRAGLAPDSSFRVKAGILYVLNESLWDEGHAYLPRDELISRSLT 234 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + ++ L + + L E +AR Sbjct: 235 LLNHVEKSVSLDIVEKELSRLKG-------------VHGSAEVSLAWAREYEEEIARDVK 281 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 + D L + L + + Q A AL S+++GGPG GKT TV + Sbjct: 282 RLARQ-RFDVPPLPRDLIRGI---ELTPDQNAAVKTALESGFSILTGGPGVGKTQTVRAV 337 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 + A + L APTG+AA RL+E G+ A T+H+LL Sbjct: 338 IRAFE--LQNPWGGVFLCAPTGRAARRLSEVTGR-----------------QAHTVHKLL 378 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 G + G + NPL D+L++DEASM L + RL++A+P++AR++F+GD DQL SV Sbjct: 379 GLRNG--HADRNRKNPLECDLLILDEASMACLVLTKRLLEAVPNNARILFVGDADQLPSV 436 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 G +L D+ L + +R ++ Sbjct: 437 GPGNILRDLLDKV---------------------------------PTVRLTEIFRQAAE 463 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 S I A INRG + + DF +E+ + ED + +G Sbjct: 464 SQIVTNAHRINRGQMPLIDR-SKTDFIFLER---EDPEDIAKCVATCASG---------- 509 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI 484 + + Q+L +R+GP G A LN+ I+ M ++ ++ G V+ Sbjct: 510 -----MGYDPL-DVQVLSPMRKGPVGTAELNKLIQGGM--SGPRVKYGQYVFHVGDKVIH 561 Query: 485 ARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 +N+ G+FNGDIGI V G + S L E E WA+TVHK+QGS Sbjct: 562 TKNNYDKGVFNGDIGIIKKIKMQHDVLVQYSSG-LVSYSGDDLRELEPAWAVTVHKAQGS 620 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAA 602 EF + + + ++ R L+YTAVTRAR ++ L ++ L+ A+ +R + L+ Sbjct: 621 EFKAVIIPVTTSHYVMLHRNLIYTAVTRAREKVILVGTKKALAIAVRNNKPIQRYTALSG 680 Query: 603 LFSS 606 L Sbjct: 681 LLRD 684 >UniRef50_O34481 Uncharacterized protein yrrC n=119 Tax=Bacillales RepID=YRRC_BACSU Length = 798 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 241/634 (38%), Gaps = 102/634 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALT-VAGDEHPAVTLAAALLSH--DAGEGHVCLPLSRL 58 + QL++ VE D + ++G+ V A EGH + +L Sbjct: 195 ENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETTCLSEGHTYIETEQL 254 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + S + + + ++A E +++ R Y ++ E+ Sbjct: 255 IIDTQSLLNQSAREGQRITEMDAANAIIA------LGENKDIVIEDGRCYFPSLFYAEQN 308 Query: 119 VARFFNEVNHAIEVDEA-LLAQTLDKLFPVSDEIN-----WQKVAAAVALTRRISVISGG 172 VA+ + E + ++ L L + + ++ QK A AL+ + +++GG Sbjct: 309 VAKRVKHIASQTEYENQFPESEFLLALGELEERMDVQYAPSQKEAIQKALSSPMLLLTGG 368 Query: 173 PGTGKTTTVAKLLAALIQMA----------DGERCRIRLAAPTGKAAARLTESLGKALRQ 222 PGTGKTT + ++ ++ E I LAAPTG+AA R++ES G Sbjct: 369 PGTGKTTVIRGIVELYGELHGVSLDPSAYKKDEAFPIVLAAPTGRAAKRMSESTG----- 423 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 A T+HRLLG G++ H P+ +L++DEASM+D+ + + L Sbjct: 424 ------------LPAVTIHRLLGWN-GAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHL 470 Query: 283 IDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTG 342 A+PDH ++I +GD DQL SV G VL D+ A Sbjct: 471 FKAIPDHIQIIIVGDEDQLPSVGPGQVLRDLLASQVIP---------------------- 508 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 L YR S I +LA + G T +D + I Q E Sbjct: 509 ---------TVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKE 559 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 ++ AL + Q+L + G G+ LN ++ + Sbjct: 560 VVEKVVANALKK-----------------GYTAKDIQVLAPMYRGKAGINELNVMLQDIL 602 Query: 463 QQ---KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFA 513 KR+ + + G ++ N +FNGDIG + + Sbjct: 603 NPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEITSIFYAKENTEKEDMAVV 662 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 DGN + + + ++HKSQGSEF L + ++ R L+YTA+TRA Sbjct: 663 SFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRA 722 Query: 574 RRRLSLYADERILSAAIATR--TERRSGLAALFS 605 ++ L L +E L + T R++ L S Sbjct: 723 KKFLILCGEEEALEWGVKNNDATVRQTSLKNRLS 756 >UniRef50_B1XZ26 Exodeoxyribonuclease V, alpha subunit n=4 Tax=cellular organisms RepID=B1XZ26_LEPCP Length = 739 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 261/692 (37%), Positives = 355/692 (51%), Gaps = 104/692 (15%) Query: 14 KQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSR------------- 57 LR LD+ A + D + LAAALL+H+ G GH CLPL Sbjct: 51 GWLRALDLSLARLLVQQCPDASAHLALAAALLAHNEGRGHTCLPLDEWLASVDEAAAPTA 110 Query: 58 -------------LENNEASHPLLATCVSEIG-ELQNWEECLLASQAVSRGDE------P 97 L+ + LA + +G + W LL S AV+ E Sbjct: 111 PGGSHARPLTEPWLDGPADAQAALARQLRALGTDPGEWRAALLCSGAVAAAGEIVATGLA 170 Query: 98 TPMILCGDRLYLNRMWCNERTVARFFNEVNHAI-----------------EVDEALLAQT 140 +P+IL G RLYL R + +E+ VA+ A D A + Sbjct: 171 SPLILSGSRLYLRRHFRDEQAVAQAVVGRAAAAMPVAEGAPQAQPHAGTEPPDAAQVRLW 230 Query: 141 LDKLF---PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-R 196 LD+LF P D +WQ+ A A+AL R+++I+GGPGTGKT TVA+LLA ++ + Sbjct: 231 LDRLFGGPPAPDRFDWQRSACAIALRGRLALITGGPGTGKTYTVARLLALVMAVHPQPQA 290 Query: 197 CRIRLAAPTGKAAARLTESLGKALRQLPLTDE------QKKRIPEDASTLHRLLGAQPGS 250 RI LAAPTGKAAARL +S+ AL+QL ++ + TLH+LLGA+P + Sbjct: 291 LRIALAAPTGKAAARLKQSIDSALQQLAAALPGALDWGLLQQRLSQSLTLHKLLGARPDT 350 Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 +R A +PL +D+LVVDEASM+ L MM+ L+ ALP +R++ LGD+DQLASVEAGAVL Sbjct: 351 RRFGRDARHPLEVDLLVVDEASMVHLEMMAALLAALPPASRLVLLGDKDQLASVEAGAVL 410 Query: 311 GDIC-AYANAGFTAERARQLSRLTGTHVP-AGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 GD+C A G+ + A + G +P + L +L++S RF + IG Sbjct: 411 GDLCVDAAAGGYDEDTAAWIQACVGQALPQPFRCGQPGPLAQQTVMLRESRRF--EGPIG 468 Query: 369 QLAAAINRGDKTAVKTVFQQDFTD-------------IEKRLLQSGEDYIAMLEEALAGY 415 LA A+N GD TA + + + A + + G+ Sbjct: 469 ALALAVNAGDVTAARRLLGLGVPAPADDGSLRAPTGVTPAAVCDLAVHGRAGNDASATGF 528 Query: 416 GRYLDLLQARAE----------PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 YL LL+ A ++QAF ++LCA+REG +GVAGLN IE+ ++Q+ Sbjct: 529 VNYLRLLREGAPRRADGPSPDGVRAVLQAFERCRVLCAVREGEWGVAGLNAAIERQLRQQ 588 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD----------RGQGTRVWFAMP 515 I R WYEGRPVM+ RND ALG+FNGDIG+AL G RVWF Sbjct: 589 GWIARQG--EWYEGRPVMVTRNDPALGVFNGDIGLALRGPAQPGGAQGAGGPLRVWFLDG 646 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 + +SV SRL ET +AMTVHKSQGSEF+H L+LP PV+TRELVYT +TRARR Sbjct: 647 E-QPRSVLASRLAAVETAYAMTVHKSQGSEFEHTVLVLPPHANPVLTRELVYTGITRARR 705 Query: 576 RLSLYA-DERILSAAIATRTERRSGLAALFSS 606 +L A + + A+ RT R SGL L ++ Sbjct: 706 AFTLVAPEPAVFDLALQRRTRRASGLPDLLAA 737 >UniRef50_C0AD34 Exodeoxyribonuclease V n=2 Tax=Verrucomicrobia RepID=C0AD34_9BACT Length = 759 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 148/612 (24%), Positives = 235/612 (38%), Gaps = 71/612 (11%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAV-TLAAALLSHDAGEGHVCLPLSRLENN 61 ++ V+ + D + L A D P + + EGH L + L + Sbjct: 206 PYKVARDVDGIGFKTADRIAINLGFANDAPPRLDAGLIYAMDTLQEEGHTALREADLIDY 265 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 A A E+ L D+P P + L + E+ +A Sbjct: 266 AAPLLETAAERLAARIDALVEQRDLIRHWPPDVDKPLP---GSALIQLPVLDRAEQKIAA 322 Query: 122 FFNEVNHAI-EVDEALLAQTLD--KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 + + LD + + Q+ A AL + S+++GGPGTGKT Sbjct: 323 SIVRLTKTGSALPPIKTEAALDWAQQKAGFQFADQQRAALRAALVSKASILTGGPGTGKT 382 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 L AL+ + ++ RI LAAPTG+AA RLTE+ G A+ Sbjct: 383 ----ASLRALVDILKAKKVRIHLAAPTGRAAQRLTETTGGY-----------------AT 421 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLL H+ PL D LVVDEASM+D + + L+ A+P A ++ +GD Sbjct: 422 TIHRLLKYDAAKGGFVHNEHQPLATDFLVVDEASMLDTRLAAALLQAIPSRAHLLLVGDI 481 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV AG VL DI A + + L Sbjct: 482 DQLPSVGAGNVLKDIIATQHVP-------------------------------VTRLNVI 510 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R S I A AIN GD + TV +Q D + + ++ R Sbjct: 511 HRQQGQSQIVTTAHAINAGDPSLPPTVGDIS-------AIQVWGDLVFLAADSAEDCVRK 563 Query: 419 LDLLQARAEPDLII--QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW 476 + L P + + Q+L + +G GV N +++ + + R P + Sbjct: 564 VIQLCTEFVPRALKWPHPVKDVQVLAPMHKGAAGVGNFNTQLQAALNPRAPGLRTPSGEF 623 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 G ++ RN+ LFNGDIG + A DG + A+ Sbjct: 624 RVGDKIIQLRNNYDKNLFNGDIGTITAVDAEEGAFDATFDGETHVFARGDAGDLALAHAI 683 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 ++HKSQGSE+ + L ++ R L+YTA+TR ++++ + + + A+ R Sbjct: 684 SIHKSQGSEYPVVIVPLMKAHFMMLQRNLLYTAITRGKKKVYIVGEPAAYAMAVRNNEAR 743 Query: 597 R--SGLAALFSS 606 + L ++ Sbjct: 744 ARTTHLREKIAA 755 >UniRef50_Q2LTP5 Exodeoxyribonuclease V alpha chain n=22 Tax=Bacteria RepID=Q2LTP5_SYNAS Length = 753 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 135/615 (21%), Positives = 234/615 (38%), Gaps = 80/615 (13%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLE 59 + +L + D + + A D H + H+ E GHV P L Sbjct: 204 ENPYRLATDIFGIGFLTADRIAEKMGFARDSHLRAEAGILYVLHELSEEGHVTYPAGPLI 263 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + E Q V P L + L + +E Sbjct: 264 RKCEETLEIDRKFIAAALEGIAGER----QIVIEDGASFPEALPDRTVSLAKYHLSETQT 319 Query: 120 ARFFNEVNHAI----EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 A + + E++ + + ++ + Q A A++ ++ VI+ Sbjct: 320 AARLRILLNTPSALREIETEKAIAWVQEKLSLT-LAHNQIEAIRAAVSNKLLVIT----G 374 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T ++ A+I++ +I LAAPTG+AA R++E+ G Sbjct: 375 GPGTGKTTIINAIIRIFSASGTKILLAAPTGRAAKRMSEATGM----------------- 417 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 +A T+HRLL P + +PL ++L+VDEASMID+ +M L+ A+P + I + Sbjct: 418 EAKTIHRLLEYSPQKGGFQKDDTSPLDCEMLIVDEASMIDIILMHHLVKAIPLPSSFIMI 477 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL SV AG VL D+ + L Sbjct: 478 GDGDQLPSVGAGRVLNDVIESGCLP-------------------------------VVEL 506 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ--QDFTDIEKRLLQSGEDYIAMLEEALA 413 ++ +R +S I A INRG ++ DF +E+ + D I Sbjct: 507 REIFRQARESSIINNAHEINRGKFPRLQPPGDRLDDFYFVEQEDPEKVVDLI-------- 558 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPH 473 + L++ R + + Q+L + G G LN ++ + + + Sbjct: 559 -----IRLVRERIPQRFGLDPMEDIQVLTPMHRGLAGAGNLNSVLQATLNPGKDGLQRGG 613 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 + G VM RN+ ++NGDIG + + DG + L E + Sbjct: 614 RFYLVGDKVMQIRNNYDRDVYNGDIGRIVRLDHELQEATLNFDGREVVYEYGDLEEIVLS 673 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +A++VHKSQG+E+ + L Q ++ R L+YTAVTR ++ + + ++ L+ A+ Sbjct: 674 YAVSVHKSQGAEYPAVIMPLLMQHYMLLQRNLLYTAVTRGKKLVVIIGSKKALAIAVRNN 733 Query: 594 T--ERRSGLAALFSS 606 +R + L+ Sbjct: 734 KTHKRFTLLSQRLRK 748 >UniRef50_B8I4C3 Exonuclease V subunit alpha n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I4C3_CLOCE Length = 813 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 140/646 (21%), Positives = 236/646 (36%), Gaps = 114/646 (17%) Query: 10 AVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHP 66 + + D A + D H L AAL L +G+ L ++L A Sbjct: 226 DIRGFGFKSCDE-IARKLGIDPHSVFRLEAALKSVLQTAEADGNCYLLKAKLLEMTAKAL 284 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 EL++ +L S ++ + +Y M+ E A E+ Sbjct: 285 SNPDVTVTTDELEDAYNRMLKSGSLVNITFSED-QQSFEAVYTKEMYKIEYETALAIKEI 343 Query: 127 NH-AIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 +V + + +++ + + QK A + +++G G+GKTTTV Sbjct: 344 ARCQPDVPMFSVDKLIEEFEAMRGFNLESMQKEAVKAVFNTNMLILTGSAGSGKTTTVEC 403 Query: 184 LLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 ++ L + + E LAAPTGKAA RLTE G +A TLHR Sbjct: 404 MIYVLQRYFEKQEEMSFMLAAPTGKAAKRLTEITG-----------------FEAMTLHR 446 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LL ++ + GN L D++VVDE+SM+ + + L A+ V+ +GD Q+ Sbjct: 447 LLQFSYENKGFFYRQGNELPYDLIVVDESSMLSIDLAHALFTAISPGTTVVLIGDTQQIP 506 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SV AG VL D+ L R Sbjct: 507 SVGAGNVLDDMIKSGVIP-------------------------------TVKLNVIKRQE 535 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 SGI A I G+ + + F E + + + L + GY Sbjct: 536 DGSGIIFNANRIINGEMPEIINANKDFFIVEEDDKNRVIKRTLEALNRLMTGYN------ 589 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEG 479 ++ Q++C + G +N+ I++ + + + +S + +G Sbjct: 590 ----------YTIDDVQVICPQKTSELGTYEMNKAIQEMVNPAAAGKAEVKRGNSVFRQG 639 Query: 480 RPVMIARNDSAL------------------GLFNGDIGIALDRGQGTRVWFAMPDGN--- 518 V+ N+ G+FNGDIG ++ + + DG Sbjct: 640 DKVIHLNNNYEATHYHKDAKTGRYIADEGSGVFNGDIGRIIEISKIGEIDQESEDGEAAG 699 Query: 519 ---------------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 I Q + L E + +++TVHK QGS+ + A + + ++ R Sbjct: 700 DNNTEEKVAVQYDEFIIIYQINELEEIDLAYSLTVHKMQGSQCEAAIFLCHLRNYIMLNR 759 Query: 564 ELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAALFSSR 607 L YTAVTRA+R + + +S + T+R + LA L S + Sbjct: 760 NLGYTAVTRAKRMACIIGQRKAISVMVQNVKVTQRNTMLADLLSLK 805 >UniRef50_C7IID4 Exonuclease V subunit alpha n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IID4_9CLOT Length = 819 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 133/638 (20%), Positives = 228/638 (35%), Gaps = 109/638 (17%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPL 67 ++ R D A + D H + AAL L EGH L +L + Sbjct: 246 IKGFGFRTCDE-IAKKLGIDSHSIFRMEAALKSVLETAETEGHCYLYRQQLLQATSKALS 304 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 EL + ++ + + + +Y M E A + Sbjct: 305 DNADKISEDELDEAYKRMIKTGLLVNITYTENEDRY-EAVYTRDMHKLEYETALAIKNIV 363 Query: 128 H-AIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 ++ A + + + + + + + QK + + +++G G+GKTTTV + Sbjct: 364 RCQPDISVAHVDKLIAEFEELKGFELEDMQKESVRAVFETNMLILTGSAGSGKTTTVECM 423 Query: 185 LAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 + L ++ + + LAAPTGKAA RLTE G +A T+HRL Sbjct: 424 IYVLQRVFENRQEMSFMLAAPTGKAAKRLTEITG-----------------FEAMTIHRL 466 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 L ++ + GN L D++V+DE+SM+ + + L A+ V+ +GD QL S Sbjct: 467 LQFSYENKGFFYRQGNELPYDLIVIDESSMLSIDLAHALFTAISPGTTVVMIGDTQQLPS 526 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V AG VL D+ L R Sbjct: 527 VGAGNVLDDMIKSGVIP-------------------------------TVKLNVIKRQAD 555 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 SGI A I G+ + + F E + + L + Y Sbjct: 556 GSGIISNANRIINGEMPEIINQNKDFFVIEEDDKYRVVKKTQEALNRLMTAYN------- 608 Query: 424 ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGR 480 ++ Q++C + G LN+ I++ + ++ + +S + EG Sbjct: 609 ---------HTIDDIQIICPQKSSEIGTYELNKAIQEMVNPAAENKQEIKRGNSVFREGD 659 Query: 481 PVMIARNDSAL------------------GLFNGDIGIALDRGQGTRVWFAMPDGN---- 518 V+ N+ G+FNGDIG ++ V D N Sbjct: 660 KVIHLSNNYETPHYRREPDTGRYFAQESCGIFNGDIGRIIEISNIKEVEAEDEDANTPEK 719 Query: 519 ---------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 I + L E + + +TVHK QGS+ + A ++ + ++ R L YTA Sbjct: 720 KVAVQYDDFIIIYHINELEEIDLAYCLTVHKMQGSQCEAAIILCHMRNYVMLNRNLGYTA 779 Query: 570 VTRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 VTRA++ + ++ + ++ ER S L L Sbjct: 780 VTRAKKMACIIGQKKAIKLMVSNVKINERNSMLCDLLK 817 >UniRef50_D1N1Q4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1Q4_9BACT Length = 635 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 213/632 (33%), Positives = 292/632 (46%), Gaps = 49/632 (7%) Query: 14 KQLRPLDVQFALTVAG----DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE-ASHPLL 68 + P+D+ FA + E + LAA S H C PL L P Sbjct: 13 GEFEPIDLAFADFMLRFARAPECEELYLAALFASRAVRLSHSCCPLRELAGMLFPETPAE 72 Query: 69 ATCVSEIGELQNWEECLLAS---------QAVSRGDEPTPMILCG-DRLYLNRMWCNERT 118 + W E L A A PTP+ + RLYL R E Sbjct: 73 GQRQFRLPGCDAWLERLSAPALAAAVSRYPACRDAGFPTPLAIDDAGRLYLQRYLVYELQ 132 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLF------PVSDEINWQKVAAAVALTRRISVISGG 172 VA+ E L D LF D ++Q++AA A +R +VISGG Sbjct: 133 VAQAVMHRARRPEHPPELPPGAFDALFINYRNGAAEDRPDFQRLAALAAASRDFTVISGG 192 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 PGTGKTT VA LLA + A R+ L APTGKA ARL E+L + ++ + ++R Sbjct: 193 PGTGKTTVVAALLAL--EFARAPELRVALCAPTGKAQARLGEALREDGLKIGTAEAIRRR 250 Query: 233 IPEDA-STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 I E A ST+ RL+G+ P + R ++HAGNPL D+++VDE+SM+ LP+M+RL+ AL R Sbjct: 251 ILELAPSTIDRLIGSAPLTHRTKYHAGNPLPFDLVIVDESSMVSLPLMARLMQALAPETR 310 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 +I LGD +QLASVE+GAVL DIC + R+ V +A L + Sbjct: 311 LILLGDPNQLASVESGAVLADICDSGKRNAFSGAIREAYLRQSPGVFLAEPDDARPLTGA 370 Query: 352 LCLLQKSYRFGSDSGIGQLAAAIN-----------RGDKTAVKTVFQQDFTDIEKRLLQS 400 L L ++RF + IG++++AI G + DF I Q Sbjct: 371 LAELTHNFRFDTAPAIGEVSSAIKLLQDGATPEKIEGLTDFIHHQQNDDFRTIAVTRDQL 430 Query: 401 GEDYIAMLEEALAGYGR---YLDLLQARAEPDLIIQAF---NEYQLLCALREGPFGVAGL 454 L L G L L + + +AF N +++L A+R GPFGV L Sbjct: 431 SARLRQELARELPGKRGCFLRLAELAEAGTAEALTEAFGLLNAFKVLAAVRRGPFGVEEL 490 Query: 455 NERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAM 514 N I + K G PVMI ND GL NGDIG+ G+ Sbjct: 491 NRLIRELFHWKSDDT--------PGMPVMILANDRLTGLSNGDIGLFWKDLAGSGAIRIY 542 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 G +S + LPEHE +AMT+HKSQGS F A L+LP +PV+TREL+YT +TRA Sbjct: 543 FPGFERSFLAAELPEHEPVFAMTIHKSQGSGFSRALLVLPDGDSPVLTRELLYTGITRAS 602 Query: 575 RRLSLYADERILSAAIATRTERRSGLAALFSS 606 + + L++ + + RT R SGL A + Sbjct: 603 KEVVLWSTPAVTRLMLERRTRRASGLQARLAE 634 >UniRef50_B0MLK7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MLK7_9FIRM Length = 753 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 133/615 (21%), Positives = 235/615 (38%), Gaps = 98/615 (15%) Query: 14 KQLRPLDVQFAL--TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATC 71 R +D A A + +L +A GH CLP +L + + Sbjct: 197 IDFRSVDRMAADLGFDAENSDRVRAGIVYVLHENANAGHTCLPTEKLRESVCDNLG---- 252 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN-EVNHAI 130 E + ++ + V R + +YL + E +A+ + + Sbjct: 253 -IERRQFESCLDDCEEKDWVVRITLGKR-----EFVYLPEYYLAETYIAKKLAFMLRTSA 306 Query: 131 EVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 + ++ + F + + Q+ A + LT + +++ G T L +I Sbjct: 307 QYEKDYSDEIRGVEFSENIQYEDLQRAAISACLTGSVFILT----GGPGTGKTTTLNGVI 362 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP- 248 ++ ++ RI L APTG+AA R+++ G E A T+HRLL Sbjct: 363 KILKAQKKRILLCAPTGRAAKRMSDLTG-----------------EPARTIHRLLEVDFT 405 Query: 249 --GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 G + + + NPL DV++ DE SM+D +M L+ A+ ++ I +GD +QL SV A Sbjct: 406 AKGELKFKRNETNPLPADVVIADEMSMVDALLMCSLVRAIKPTSKFIMVGDSNQLPSVGA 465 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G VL D+ A L++ +R + S Sbjct: 466 GNVLKDLIASHYIPS-------------------------------VELKEIFRQAAQSL 494 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I A I G+ + Q DF + K L G + L + R Sbjct: 495 IVTNAHRIVNGEFPVLDD-RQNDFFFMNKSLESDI-------------AGLVIQLAKQRL 540 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVM 483 ++ Q+LC + G G LN++++ + + + + G VM Sbjct: 541 PDTYGFSPIDDIQVLCPTKMGMAGTKELNKQLQSALNPPSQNKAELKFFDVIFRTGDKVM 600 Query: 484 IARNDSAL----------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 +ND + G+FNGDIGI + ++ +G + L E Sbjct: 601 QTKNDYDVLWTKNNEKGSGIFNGDIGIIRSVDRFSQNVTIDFEGRVAIYTSEMLRRLEHA 660 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +A+T+HKSQGSE+D + + + ++ R L+YT VTRA++ + + + ++ + Sbjct: 661 YAITIHKSQGSEYDAVIIPITAFTHNLLYRNLLYTGVTRAKKMIIVIGTKELVKTMVDNN 720 Query: 594 TE--RRSGLAALFSS 606 + R S L L Sbjct: 721 RKMLRYSLLRPLLEK 735 >UniRef50_Q0AAH8 DNA helicase/exodeoxyribonuclease V, alpha subunit n=3 Tax=Ectothiorhodospiraceae RepID=Q0AAH8_ALHEH Length = 703 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 256/686 (37%), Positives = 341/686 (49%), Gaps = 90/686 (13%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLEN 60 L V+ LRPLD A+ + A L L SH G GHVCL L L+ Sbjct: 22 LALLEAWVDGGWLRPLDRALAVFLHQHVPQAPPLLLLLAALTSHQVGRGHVCLELPALQA 81 Query: 61 NEASHPLLATCVSEIGE--LQNWEECLLA---------SQAVSRGDEPTPMILCGDRLYL 109 + L G W + L + V G +P++ RLYL Sbjct: 82 DPDGTLSLPPEGGAEGAARPSRWLQGLDEAALAAALDCPELVQDGPGSSPLVRQEQRLYL 141 Query: 110 NRMWCNERTVARFFNEVNHAIE-----VDEALLAQTLDKLFPVSD--EINWQKVAAAVAL 162 R W E + + + A +D + L++LFP +WQ++A A+A Sbjct: 142 RRYWDCEVRIGQALHRRMAAAADWQQGLDGEATRRWLERLFPAGGGAATDWQRLACALAA 201 Query: 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGE------RCRIRLAAPTGKAAARLTESL 216 R +VI+GGPGT +L L+ + + RIR+AAPTGKAAARL S+ Sbjct: 202 GRGFTVITGGPGT---GKTTTVLRLLVLLQALQQAAADAPLRIRMAAPTGKAAARLNASV 258 Query: 217 GKALRQLPLT-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEA 271 AL +LPL + + IP + T+HRLLGA+P S+ RH AG PL LDVLVVDEA Sbjct: 259 AGALARLPLDGVADAEALRAAIPTEVVTVHRLLGARPDSRHFRHRAGEPLPLDVLVVDEA 318 Query: 272 SMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLS 330 SMIDL +M+ L+DALP AR+I LGD+DQLASVEAGAV+G++C A+ G +T LS Sbjct: 319 SMIDLELMASLLDALPPEARLILLGDKDQLASVEAGAVMGELCHRADGGHYTPATTAWLS 378 Query: 331 RLTGTHVPAGTGTEA-ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 ++G VPA A L + +L+ S+RFG+DSGIG LA A+N GD AV+ ++ Sbjct: 379 EVSGESVPADYRDPAGRPLDQHIVMLRHSHRFGADSGIGALARAVNGGDAAAVEALWAAG 438 Query: 390 --FTDIEKRLLQSGEDYIAML---------------EEALAGYGRYLDLLQARAE----- 427 DI + L ED E GY YL+ + Sbjct: 439 ASHPDIARLHLAGPEDPALEALAVAGGADHFAAGASGEGPRGYRYYLEAMHDGRPRDDAP 498 Query: 428 -------PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480 ++QA +QLL A+R GP+GV LN+RI ++ + S WY GR Sbjct: 499 RSAWDDWARSVLQAQGAFQLLGAVRRGPWGVEALNQRIAAALRDAGLV--RATSAWYAGR 556 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQG-------------------TRVWFAMPD--GNI 519 PV++ RND LGL NGD+G+AL +G RV F D G I Sbjct: 557 PVIVTRNDYDLGLINGDMGVALAVPEGLAGGAPSDDAGRRDGARTVLRVAFLASDGSGRI 616 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + V PSRL + ET +A+TVHK+QGSEF HAAL+LP + PV+TREL+YT +TRA SL Sbjct: 617 RWVLPSRLEQVETAYALTVHKAQGSEFRHAALVLPDRVAPVLTRELLYTGITRASDWFSL 676 Query: 580 YADE-RILSAAIATRTERRSGLAALF 604 +L AI RT R GL Sbjct: 677 LEPPGGVLVRAIRQRTLRSGGLRTRL 702 >UniRef50_C0QEU8 RecD1 n=2 Tax=Desulfobacterales RepID=C0QEU8_DESAH Length = 826 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 143/660 (21%), Positives = 239/660 (36%), Gaps = 84/660 (12%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENN 61 QL D V ++ ++ D + + GH L S++ Sbjct: 190 PYQLANDFYGIGFFSADKVALSIGLSLDSPQRIMAGIEHVLAAGRNFGHCFLTFSQINQQ 249 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + L L + + + V + Y ++ +ER VA+ Sbjct: 250 ASELLQLDLTHG----LTRLLDQMEQDRLVMVRHLVIDNKVAEPCYYSRSLYFDERYVAK 305 Query: 122 FFNEVNHAIEVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGKTT 179 VD + + + V+ + Q + + SV++GGPG GKTT Sbjct: 306 RVKASIGPCPVDRQRVTAWIHRYCRVNAMELSLEQAASVEGIVGEPFSVLTGGPGCGKTT 365 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 T L+ + M + LAAPTG+AA R+ E +G ++A T Sbjct: 366 TTRVLVELIRAM----GRSVLLAAPTGRAAQRMEELIG-----------------QEAKT 404 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +HRLLG Q GS R + +PL D L+VDE SM+D+ + + L+ A+P +V+F+GD D Sbjct: 405 IHRLLGWQNGS--FRKNEKSPLDCDFLIVDECSMLDITLTASLLKAVPAACQVVFIGDSD 462 Query: 300 QLASVEAGAVLGDICAYANAGFTA----------------------------ERARQLSR 331 QL SV AG VL DI A + E + Sbjct: 463 QLPSVGAGNVLKDIIASNSVACFRLTEIFRQARESLIIKYAHKINQGEIPWIESPFKRPD 522 Query: 332 LTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFT 391 V + R+ L + + R D Q + N + + Sbjct: 523 AWQQRVDCLFVDADEATREQLTFINRVKRLVDDPRENQTSRVSNPFEFGVNDPGLHGNPI 582 Query: 392 DIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL---------- 441 I K+ + + + L + + A + ++L Sbjct: 583 TIPKKFQHVDLQQVCGAKTEIEELKAVLKKVHPWSSLRYGYTALDTVKMLFQHWIPKYYG 642 Query: 442 --------CALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDSA 490 + G G LN I+ + + + G V+ +N+ Sbjct: 643 SSSEIQILTPMTRGTLGTINLNRVIQAAVNPLTHGTAQLKVGERIFRVGDRVIHRKNNYD 702 Query: 491 LGLFNGDIGIALDRGQGTRVWFA--MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 LG+FNGDIG + PDG Q + E + +A+T+HKSQGSEF+ Sbjct: 703 LGVFNGDIGRIVSIDNVELTCVVSFFPDGREVIYQKEEVIELDLAYAVTIHKSQGSEFEI 762 Query: 549 AALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSS 606 + + +Q ++ R L+YT +TRAR + L+ A+ + +R++ L L + Sbjct: 763 VIIPVMTQHYKMLFRNLIYTGLTRARTLALFVGTRKALAMAVMNQDTGQRQTALEQLLAQ 822 >UniRef50_C5SD04 Helicase, RecD/TraA family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SD04_CHRVI Length = 694 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 150/616 (24%), Positives = 226/616 (36%), Gaps = 121/616 (19%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL 58 + +L + + D A + + A + L AG GH L Sbjct: 184 ENPYRLALDIHGIGFKTADS-LAERLGIPRDSLMRAQAGVRHALQEIAGNGHCAAWRETL 242 Query: 59 ENNEASHPLLA-TCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 + + + + + + E L+A +R L+L + E Sbjct: 243 IEQATALLEIPAPLIEQAIDAELDAERLIAESITARAA-----------LFLTPLQRAEL 291 Query: 118 TVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE------INWQKVAAAVALTRRISVISG 171 VAR + D D+ +P +E + Q+ A A L ++++++G Sbjct: 292 GVARHVARLQ---PGDPPWGRIQTDRAWPWVEERTGLQLSDSQRAAIARVLAAKVAILTG 348 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GPG GKTT V LL L R+RL APTG+AA RL+ES G+ Sbjct: 349 GPGVGKTTVVNSLLLLLQAKHT----RVRLCAPTGRAAKRLSESTGR------------- 391 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 +A T+HRLL P + +H A NPL LD+LVVDE SM+D+ +M++L+ A+PDHA Sbjct: 392 ----EARTIHRLLEFDPETFGFKHTADNPLDLDLLVVDEVSMVDVSLMNQLLRAVPDHAG 447 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 V+ +GD DQL SV GAVL D+ A Sbjct: 448 VLLVGDVDQLPSVGPGAVLADLIASG-------------------------------AVV 476 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 L +R S I A IN G Sbjct: 477 TARLTDIFRQAEASRIVVNAHRINAGQFPEDPD--------------------------- 509 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRKIHR 470 + + Q+L + G G LN ++ + + Sbjct: 510 ---------------PERFGLDPVADIQVLTPMNRGGLGARALNGALQAALNPTTQPRLE 554 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEH 530 + G V+ ND +FNGDIG + +G + L Sbjct: 555 RFGWTYAPGDKVIQLVNDYDKEVFNGDIGRVVSIDLEEGEVVIDFEGRTVVYETGELDAL 614 Query: 531 ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 +A ++HKSQGSE+ + L +Q ++ R L+YTAVTR RR + L A R L+ A+ Sbjct: 615 ALAYATSIHKSQGSEYPAVVIPLATQHYTLLQRNLLYTAVTRGRRLVVLIAQPRALAMAV 674 Query: 591 ATRTE-RRSGLAALFS 605 R + L Sbjct: 675 KQTGAGRLTKLRERLQ 690 >UniRef50_Q89AB2 Exodeoxyribonuclease V alpha chain n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX5A_BUCBP Length = 618 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 196/613 (31%), Positives = 339/613 (55%), Gaps = 16/613 (2%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 M + L + V+ K + + + + +++ T + ++H GHVCLP +++ Sbjct: 1 MTITSILQKMVKLKIITSSNFYLSTML-FNKNTLATFLSICVNHFTNHGHVCLPHVLIQH 59 Query: 61 NE---ASHPLLATCVSEIGELQN--WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 + +H L T + EI ++ W E LL S +S G + TP I + Y+N+ W Sbjct: 60 QKIFFTNHIALITKLWEIAKINTCGWIEQLLNSNTISNGSKNTPFIFYKNNFYINKFWLA 119 Query: 116 ERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 E+ + +F ++ + +++ + + L +F ++ + QK+A +++ I+ I GGPGT Sbjct: 120 EQKILKFISQKQNFKLINKNKIQKILKNIFN-TNIDDTQKLAIILSIINNITFIIGGPGT 178 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GKTT + K+L + ++ I+L A TGKAA RL+ES+ + +++L LT+ +K + Sbjct: 179 GKTTIILKILLV-LIRLHKKKINIKLTALTGKAANRLSESIHENIKKLNLTEHEKNIFNQ 237 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPL-HLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 +TLH LL +P N L +L++L++DEASMID+ +M +LI ++P ++IF Sbjct: 238 KTTTLHNLLDLKPNKSFNYSCCKNKLYNLNLLIIDEASMIDITIMDKLISSIPKTTKIIF 297 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT--HVPAGTGTEAASLRDSL 352 LGD +QL S+ G +L +IC+Y GF+ + L +L + + +++ D + Sbjct: 298 LGDYNQLPSISGGNILKNICSYYQEGFSTTTNKFLKQLFPNRITIKTIKKHQFSNINDKI 357 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 +L+KSYRF S I +++ + + +KT++Q D+ + + S +Y ++ E Sbjct: 358 IMLKKSYRFKKKSDIFKISEMLTKNKINNIKTLYQNINNDVNFKQISSKTNYNNIIFEIT 417 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR-- 470 Y +Y L+ II FN Y++LC L+ G FG+ LN IE+ M++ I + Sbjct: 418 NSYSKYWSALKQSLPFLKIINIFNNYKILCILKNGLFGITELNLAIEKEMKKIGWIKKVT 477 Query: 471 -HPHSRWYEGRPVMIARNDSALGLFNGDIG-IALDRGQGTRVWFAMPD-GNIKSVQPSRL 527 WY G+P++I +N+ + LFNG+ G LD + +V+F + I S+ + Sbjct: 478 IINGQTWYFGKPILILKNNEEMNLFNGECGLTLLDANKKLKVFFLPKNQEQIYSIPIHLV 537 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 PEH+T W MTVHKSQGSEF LILP+ T ++T+EL+YTAVTR++++L++Y+DE I Sbjct: 538 PEHQTNWTMTVHKSQGSEFSEVVLILPTIMTSILTKELIYTAVTRSKKKLTIYSDENIFI 597 Query: 588 AAIATRTERRSGL 600 ++ R SGL Sbjct: 598 KSLKKNIIRYSGL 610 >UniRef50_D1U587 Helicase, RecD/TraA family n=2 Tax=Desulfovibrio RepID=D1U587_9DELT Length = 736 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 142/611 (23%), Positives = 228/611 (37%), Gaps = 81/611 (13%) Query: 7 LLEAVEHKQLRPLDV-QFALTVAGDEHPAVTLAAALLSH--DAGEGHVCLPLSRLENNEA 63 L + R D L A D + A GH+ +P L ++ A Sbjct: 188 LAYEIRGVGFRTADQMAMKLGFAPDCAQRLEAAIVYALFTSCERSGHLFIPKDTLLSDVA 247 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + L + EE E P D +YL + E + + Sbjct: 248 RMLDTSDYDRLELALYSLEEKKRVR------IENLPEQGVSDAVYLMHFYHYENEITQRL 301 Query: 124 NEV-NHAIEVDEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 ++ +H V + +TL + + Q+ A A + ++ +I+GGPGTGKTT Sbjct: 302 YQLVSHPTPVSRKKIDKTLPLVEDKLGFKLSDEQRRAVFEACSNKVFIITGGPGTGKTTI 361 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 ++ L ++ ++ AAPTG+AA R+TE+ G A T+ Sbjct: 362 TKAIMLTLKEL----GLTVKQAAPTGRAAKRMTEATGH-----------------PAHTV 400 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HRLL QP + L DVLV+DEASM+D + ++ +LP R+I +GD +Q Sbjct: 401 HRLLQYQPDGG-FHYCEDQKLKADVLVIDEASMVDAHLFVSILRSLPHTCRLILVGDVNQ 459 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV G VL D+ +L +R Sbjct: 460 LPSVGPGNVLADLINSERVP-------------------------------CAVLTHIFR 488 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 +S I A IN G Q D + ++ LD Sbjct: 489 QAQESFIVVNAHRINSGQFPRQHPC-QAPEADFFWIPQEDSAKVQKLI----------LD 537 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW---Y 477 + R + + Q+L + +G G LN ++ + R ++ Sbjct: 538 SVCERIPERYGLDPRRDIQVLTPMHKGDVGTQALNAALQARLNPPGPHVRELKRKFATYR 597 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 G V+ +N+ +FNGD+G +D + DGN + L E +A++ Sbjct: 598 AGDRVIQLKNNYDKEVFNGDLGWIVDVDTEAQELLVEFDGNNVQFEAGELDELGLAYAVS 657 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--E 595 VHKSQGSE+ + + +Q ++ R L+YT +TRAR L ER + T + Sbjct: 658 VHKSQGSEYTAVVMPIVTQHYMLLQRNLLYTGLTRARELAVLIGSERAFQIGLNNATAGQ 717 Query: 596 RRSGLAALFSS 606 R + LA + Sbjct: 718 RNTNLAYRLRN 728 >UniRef50_D1VRZ7 Helicase, RecD/TraA family n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRZ7_9FIRM Length = 727 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 149/628 (23%), Positives = 241/628 (38%), Gaps = 100/628 (15%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAA-ALLSHDAGEGHVCLPLSRLE 59 + L+E + + D + + + D + +LS GH LPL L Sbjct: 176 ENPYVLIEDIGGIGFKKADQIALSFGIKKDSEERIIQGLKYVLSRANLNGHTYLPLDILV 235 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 N ++ I +L+N L S+ + Y E + Sbjct: 236 KNANKLLGIS-----IDDLENSLRGLSFSKDFYVDK-----VGNDYLCYYAPYLRAENYI 285 Query: 120 ARFFNEVNHAIEVDEALLAQTLD-KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 A NE+N D + + + + + Q+ A +L + +I+ G Sbjct: 286 AGKLNEINITFHEDLDVNKKIEEIEKTRNIKLAHGQRQAIKKSLDHGVFLIT----GGPG 341 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T L ALI + + +I+LAAPTG+AA R+ ES G DA Sbjct: 342 TGKTTALKALIDVYEFMGKKIKLAAPTGRAAKRMKESTGH-----------------DAL 384 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+H+LL + ++ L DVL+VDE SM+D+ +M L+ +L R+I +GD Sbjct: 385 TIHKLLEINFTDSKDIYYDPIDLECDVLIVDEMSMVDIMLMETLLRSLEKGVRLILVGDP 444 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV AG VL DI S L + Sbjct: 445 DQLPSVGAGNVLRDIIDSK-------------------------------LFSQVNLVEI 473 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R +S I + A IN+G++ + DF I ++ G + I Sbjct: 474 FRQKEESMIIKNAHLINKGERPIL---NNNDFFLISEQGENKGLEIIK------------ 518 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 DLL R I + ++ Q+L +++G G LN+ +++ + + ++ + Sbjct: 519 -DLLSKRLGEYYGIDS-SDIQVLSPMKKGLLGTFNLNKVLQELLNKSQEKIEVFGKTFKL 576 Query: 479 GRPVMIARNDSAL--------------GLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQ 523 V+ +N+ L G+FNGD+G + + D Sbjct: 577 YDRVIQMKNNYDLEAIIENDFYKETTKGVFNGDLGYISSIDVEEKILEVTFDDAKKVKYL 636 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 P L + E ++AMT+HKSQGSEF + L ++TR L+YTA+TRA + + L Sbjct: 637 PEDLDQLELSYAMTIHKSQGSEFPVVVIPLFWAPPMLLTRNLIYTAITRASKLVVLVGKY 696 Query: 584 RILSAAIATRTE--RRSGLA-ALFSSRE 608 L I R S L L + E Sbjct: 697 EYLMKMIENNKTRIRYSNLKNKLIEANE 724 >UniRef50_B4X4Z2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Alcanivorax sp. DG881 RepID=B4X4Z2_9GAMM Length = 688 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 249/601 (41%), Positives = 330/601 (54%), Gaps = 43/601 (7%) Query: 17 RPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLS--RLENNEASHPLLATC 71 R LDV A + A V L AA S+ GH+CL L L Sbjct: 25 RDLDVAIARFLNQQCPQASYPVLLLAAFTSNQQASGHLCLDLKNRELATQLWGTSPPPEL 84 Query: 72 VSEIG-ELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF-NEVNHA 129 VS + + +W L S VS+ D TP++L G RLYL R W E +VA + Sbjct: 85 VSLLPGKPDDWLHDLQHSPLVSQ-DGSTPLVLDGSRLYLRRNWAREVSVAEAISQRLATV 143 Query: 130 IEVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + L L +LFP + D+ +WQ+VA A+A I +I+GGPGTGKTTTV +LL L Sbjct: 144 SPLPAERLRDALARLFPNAGDQTDWQQVACALASRSGIGIITGGPGTGKTTTVVRLLGLL 203 Query: 189 IQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA 246 +A + +R RIRLAAPTGKAAARLTES+G+ + +L + + IP + +TLHRLLG Sbjct: 204 QSLAMTENQRLRIRLAAPTGKAAARLTESIGEQVEKLEVETAVRDAIPTEVTTLHRLLGT 263 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 +P S+ RHHA NPLH D++VVDEASMID+ MM+ L++AL H R+I LGD+DQLASVEA Sbjct: 264 RPDSRHFRHHADNPLHADLVVVDEASMIDMDMMASLLEALSPHTRLILLGDKDQLASVEA 323 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTH----VPAGTGTEAASLRDSLCLLQKSYRFG 362 GAV+GD+C +A+ G + + R T +L +L+ ++R Sbjct: 324 GAVMGDLCRHAHQGRYQQGTIEFVRDTCGADISGYQETEQAPGNALAQQTAMLRTNWRSK 383 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ-SGEDYIAMLEEALAGYGRYLDL 421 GIG+LA A+N + V+ FQQ + + L+ G+ +L + L Sbjct: 384 DSPGIGELARAVNEENLPQVRKAFQQYDDSLHRHPLRSDGQQLETLLLNGSGDHSGLRAL 443 Query: 422 LQARAEPDLIIQAFNEY-----------QLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 QA A P + F+ + QLL LR GPFGV LN+RI + +QQ+ Sbjct: 444 FQAVATPPAQREEFDGWAAALLKQLTHQQLLSGLRSGPFGVEQLNQRITRHLQQQ---DL 500 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-------------RVWFAMPDG 517 P WY GRPVM+ RND LGL NGD+G+ L + RV F +PDG Sbjct: 501 APEREWYPGRPVMMTRNDYQLGLMNGDVGLTLPLLEEKKREERNGKPALLLRVAFQLPDG 560 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 IK V PSRL ET +AMTVHKSQGSEF H L+LP P++TREL+YTAVTRAR R Sbjct: 561 RIKWVLPSRLDGVETVYAMTVHKSQGSEFRHTLLVLPDAPHPLLTRELIYTAVTRARDRF 620 Query: 578 S 578 + Sbjct: 621 T 621 >UniRef50_A4XG10 ATP-dependent DNA helicase, RecD/TraA family n=2 Tax=Clostridia RepID=A4XG10_CALS8 Length = 741 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 157/631 (24%), Positives = 261/631 (41%), Gaps = 110/631 (17%) Query: 7 LLEAVEHKQLRPLDV-QFALTVAGDEHPAVTL-AAALLSH-DAGEGHVCLPLSRLENNEA 63 LL+ + +D F L V+ D+ ++ LL+ EGH+CLP +L + Sbjct: 182 LLDVFPELDFKKVDRLAFDLGVSPDDMRRISAKIVNLLNMGSNNEGHICLPKEKLILFVS 241 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR-- 121 T E + + + A + V + M+ +L + ER +A Sbjct: 242 KALEQDTEKVE----EALDSLIKAKRVVIDTVDGLEMV------FLYGFFECERYIAEKI 291 Query: 122 --FFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 E + +++DE + S QK A +ALT+ +SVI+ G T Sbjct: 292 ASMLKEYDDILDIDERISEFEKKNSIVFSQN---QKKAIKMALTQGVSVIT----GGPGT 344 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 ++ +I++ + E ++ L APTG+AA R+ + + ++A T Sbjct: 345 GKTTIIKCIIEIFEQEGKKVFLCAPTGRAAKRMQQ-----------------QCEKEAKT 387 Query: 240 LHRLLGAQPGSQR--LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 +HRLL + + NPL DV++VDE SM+D +M L+ A D R++ +GD Sbjct: 388 IHRLLEMTVTDSQVFFQKGPNNPLRCDVIIVDEMSMVDSYIMYYLLSATKDTTRLVLVGD 447 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 +DQL SV AG +L D+ + L + Sbjct: 448 KDQLPSVGAGNILKDLIRSDVVPY-------------------------------VRLTE 476 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 YR DS I A IN G+ ++ DF I+K + I Sbjct: 477 VYRQSEDSFIVLNAHRINNGEFPYLQK--NSDFYFIQKNSPEEILKTI------------ 522 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHS 474 ++L+ + L + Q+LC ++G G+ +N ++Q++ K +K + + Sbjct: 523 -VELVTKKLPNYLSADPLTDIQVLCPSKKGVVGMYNINRVLQQYLNPKDGSKKEVVYKEN 581 Query: 475 RWYEGRPVMIARNDSAL---------------GLFNGDIGIALDRGQ-GTRVWFAMPDGN 518 + G VM +N+ +L G+FNGDIG+ D + G+ + D Sbjct: 582 TFRVGDKVMQIKNNYSLEFTIIEGEEKGKVSTGIFNGDIGVIKDIDRAGSAMEIVFDDDK 641 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 + S L + E ++AMTVHKSQGSEF + + ++TR L+YTAVTRA+ + Sbjct: 642 LVFYDFSLLDDLELSYAMTVHKSQGSEFRCIVMPVVETYPILMTRNLLYTAVTRAKELVV 701 Query: 579 LYADERILSAAIATRTE--RRSGLAALFSSR 607 L + L IA + E R S L + Sbjct: 702 LVGKKSALEYMIANQKEAMRYSALYDFLKRK 732 >UniRef50_B4VXL3 Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VXL3_9CYAN Length = 777 Score = 411 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 143/626 (22%), Positives = 234/626 (37%), Gaps = 87/626 (13%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVT---LAAALLSHDAGEGHVCLPLSRL 58 Q++ ++ + D AL + + L +GH LP S L Sbjct: 120 TNPYQIINEIDGIGFKIADS-LALKLGMPPDSPLRYEQGIIQTLQDARNQGHCFLPSSEL 178 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 L E L + V G + LYL ++ E Sbjct: 179 IEAALGLLSCPGHTPNPRLLNQVLENALTQKIVVEG-------RLSESLYLKPIYRAEVN 231 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLF-----PVSDEINWQKVAAAVALTRRISVISGGP 173 VA+ ++ L + L KL Q+ A + + IS+I+GG Sbjct: 232 VAQLILYFASRSQLPIEPLKEWLQKLEAVEWRESDLLAPEQRQALLKSYAQPISIITGGA 291 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 G GKT + L+ L + R ++ LAAPTGKAA R+ + G Sbjct: 292 GRGKTHILKYLINWLTE----CRFKVALAAPTGKAATRMKNATG---------------- 331 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 DA T+HRLL + Q+ + NPL +D L++DE SM+D+ + + L+ AL H R++ Sbjct: 332 -LDAQTIHRLLQWRGYGQKFEFNQDNPLPIDWLIIDEFSMVDIFLFNSLLKALEPHTRIV 390 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD +QL SV AG VL D+ + Sbjct: 391 LVGDHNQLPSVGAGMVLRDLLISEVVPCS------------------------------- 419 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L+K YR +S I A + RG ++ ++ + + EA+A Sbjct: 420 RLKKIYRQPEESPIIYAAEDVIRGVVPNLQRFNSP----LQWQEVSDCALLCRHTPEAIA 475 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH-- 471 L R + +L ++ +L ++G GV LN+R++ K+ Sbjct: 476 DTIVELVAQMQRDQVNLK----DQVMVLAPQKKGVVGVQALNKRLQPLFNPKQPEQPEVE 531 Query: 472 -PHSRWYEGRPVMIARNDSAL--GLFNGDIGIALDR---GQGTRVWFAMPDGNIKSVQPS 525 + G V+ +N + NG+ G ++ Q RV A G + P Sbjct: 532 TGEVVYRVGDRVIQLKNRYDTIPAVMNGEGGWVIEVHPKSQPERVKVAFEGGAVVDYVPG 591 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR-RLSLYADER 584 + ++ +T HK+QGSEF + + L +++R+L+YT +TRA Sbjct: 592 IFEQIMHSFCLTCHKAQGSEFQYVIMPLSPSNHRMLSRQLLYTTMTRASYGGFIAVGRPE 651 Query: 585 ILSAAIA--TRTERRSGLAALFSSRE 608 L A++ R + L L S E Sbjct: 652 TLKFAVSVDKPMRRYTQLPLLLSESE 677 >UniRef50_A6GES1 Exodeoxyribonuclease V n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GES1_9DELT Length = 813 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 155/633 (24%), Positives = 242/633 (38%), Gaps = 89/633 (14%) Query: 1 MKLQ----KQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLP 54 M + +L V+ + D + AL V D V L +GH LP Sbjct: 197 MAMLVHHPYRLAREVKGIGFQTADRIARALGVDLDSDERVDAGIVHALEKAKNDGHCALP 256 Query: 55 LSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGD---------EPTPMILCGD 105 L + S L E G + + L + P P + Sbjct: 257 PGSLLDQARSILSLPEARIEAGIDRLIDAGDLIPRLRPESGFHSGEKGSGGPKPAGGPDE 316 Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRR 165 +L R E + + + + D L Q+ A Sbjct: 317 LYFLERFDEAETN-LVAALLALASAPSEAWPVGELPDHL------SEGQRRAVEAVARCG 369 Query: 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 +++++GGPGTGK+T VA +L I LAAPTG+AA RL ++ G+A Sbjct: 370 VTILTGGPGTGKSTVVANVLNVAKAAL----VPIMLAAPTGRAAKRLEQTTGEA------ 419 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 A T+HRLL Q + +H A +PL ++V+DE+SM+DL + LI + Sbjct: 420 -----------ARTVHRLLEVQGETGEFKHCANDPLPPGLVVIDESSMLDLELAEALITS 468 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 L R++ +GD DQL SV G VL D+ A G Sbjct: 469 LTADNRLLLVGDADQLPSVGPGNVLRDLIRAAET---------------------LGERG 507 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L + L + +R S I A + G A + ++GE ++ Sbjct: 508 GELEVPVVRLDRIFRQQEGSTIVLNAHHVLSGRPLAPDGADRG----------KAGEFFV 557 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 +A + + +++ R + E Q+LC + +G G N ++ Sbjct: 558 LRAPDAERTHAKIVEMAAERIPAAFGLDRITEVQVLCPMHKGRAGTEAFNRALQARYTGD 617 Query: 466 RKIHRHP---------HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ----GTRVWF 512 R+ P + G VM RND G+FNGDIG+ L Q G Sbjct: 618 RECLEAPGAGRGKGGDGRVFRLGDRVMQIRNDYDRGVFNGDIGVVLRMDQSAANGAGTMT 677 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 +G++ + + L +A+++HKSQGSEF + + ++ ++ R L+YTA+TR Sbjct: 678 VDFEGSLSTYERKDLGSLRLAYAISIHKSQGSEFPAVLIPMLTEHHVMLRRNLLYTAMTR 737 Query: 573 ARRRLSLYADERILSAAIAT--RTERRSGLAAL 603 ARR L D R + AI R +GLA Sbjct: 738 ARRLCVLVGDPRAIERAIRRADAAHRWTGLAER 770 >UniRef50_D2RL74 Helicase, RecD/TraA family n=2 Tax=Acidaminococcus RepID=D2RL74_ACIFE Length = 721 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 156/617 (25%), Positives = 237/617 (38%), Gaps = 100/617 (16%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEH--PAVTLAAAL-LSHDAGEGHVCLPLSRLENNEA 63 L E VE R D A + DEH + L AG+GH C+P S L N A Sbjct: 185 LAEDVEGIGFRTAD-ALARNLGMDEHGDERIRAGIHYTLLQGAGQGHTCVPDSWLVGNAA 243 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + Q + LL ++ +Y ++ E VA Sbjct: 244 RVLQVDPLEVRQVFDQLLRDNLLRAED----------RGDHVCVYPEYLYRAEEGVAHRL 293 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + + + Q + + + + Q A ++ + V++ G T Sbjct: 294 LALRDNVNALWKVDYQKIIREWERDERIRLAPEQAEAVKASVDHGVFVLT----GGPGTG 349 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 ++ ++ + + C+I LAAPTG+AA RL+ES GK A T+ Sbjct: 350 KTTVVKGILSVMEQAGCKILLAAPTGRAAKRLSESAGK-----------------PALTV 392 Query: 241 HRLLGAQPGSQR---LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 HRLL P + + NPL D ++VDEASM+D+ +M L+ ALP R+I +GD Sbjct: 393 HRLLEYTPNGEGDSFWGRNEDNPLEADAVIVDEASMMDIVLMYNLLKALPLGCRLILVGD 452 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 DQL SV G+VL DI + L+ Sbjct: 453 VDQLPSVGPGSVLQDIIRSGTMP-------------------------------IVRLEN 481 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 +R S I + A IN+G + ++DF E + YI L LA Sbjct: 482 VFRQAELSPIVRNAHRINQGLMPQWE--GEKDFRFREFATEEETMHYIVDLYVHLAAR-- 537 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW- 476 Q + Q+L + + GV LN ++ M + + Sbjct: 538 ---------------QPQDAIQVLTPMHKNLCGVENLNNMLQARMNPPSPEKQEYRGSFL 582 Query: 477 --YEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPD---GNIKSVQPSRLPEHE 531 EG VM RN+ +FNGDIG QG V PD G + + + + + Sbjct: 583 LLREGDKVMQIRNNYDKNVFNGDIGRICSI-QGAHVTVDFPDRAEGEAVTYEGAEVSDLR 641 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +AM+VHKSQGSE+ + L ++ R L YTA+TRA++++ L R L A+ Sbjct: 642 LAYAMSVHKSQGSEYAVVLMPLVLSHYILLQRNLFYTAITRAKKQVYLAGSRRALRTAVE 701 Query: 592 TR--TERRSGLAALFSS 606 +R S LA Sbjct: 702 NDRTRKRYSLLAERLKR 718 >UniRef50_A6TL79 Helicase, RecD/TraA family n=35 Tax=Bacteria RepID=A6TL79_ALKMQ Length = 754 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 147/635 (23%), Positives = 247/635 (38%), Gaps = 110/635 (17%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTL---AAALLSHDAGEGHVCLPLSRL 58 + +L + + + D A + H + +L+ GEGH P +L Sbjct: 184 ENPYRLADEIVGIGFKRAD-AIARNMGVHPHSKYRIHSGIKYMLNTFQGEGHTYAPGVKL 242 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + E + L + R D+ +Y + E Sbjct: 243 IQRAEELLRVEEGQVEGAIQEL---ALNQEIQLERIDDEII-------VYSMPYYYAESN 292 Query: 119 VARFFNEVNH----AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 V + + IE+D Q +++ ++ QK A A+ ISVI+ Sbjct: 293 VCKKLISLAQVELDPIEMDIDEELQKIEQAEEMT-LAKQQKEAIKEAIENGISVIT---- 347 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 G T + +LI++ + ++ LAAPTG+A+ R+TE+ GK Sbjct: 348 GGPGTGKTTTINSLIKVFEKLELKMLLAAPTGRASKRMTEATGK---------------- 391 Query: 235 EDASTLHRLLGAQPGSQR----LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 ++ T+HRLL G R + + NPL V+++DE SM+D+ +M+ L+ ++ Sbjct: 392 -ESKTIHRLLELGFGDDREGMLFQRNEDNPLDCHVIIIDEVSMVDIILMNSLMKSIARGT 450 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 RV+ +GD DQL SV AG VL DI Sbjct: 451 RVVLVGDVDQLPSVGAGNVLRDIIDSKVV------------------------------- 479 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 L + +R +S I A IN+G + Q+DF +++ + ED +A + Sbjct: 480 KTIRLTEIFRQAQESMIVVNAHRINQGLYPQLNEK-QKDFYFMKR---NAKEDVLATV-- 533 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RK 467 ++L++ R A + Q+L +++G G LN+ ++ + + Sbjct: 534 --------VELVRDRLPKHYQFDALRDIQVLTPMKKGETGTLNLNKELQAALNPPNVSKA 585 Query: 468 IHRHPHSRWYEGRPVMIARNDSAL---------------GLFNGDIGIALDRG-QGTRVW 511 + EG VM +N+ L G+FNGDIG + + Sbjct: 586 EKDLKEKIFREGDKVMQIKNNYTLKWRCLDPMAEEQKGEGVFNGDIGYVQSIDTEAEELV 645 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 D + ++L E E +++T+HKSQGSEF + + ++TR L+YTAVT Sbjct: 646 ILFDDQKQVNYSFTQLDELELAYSVTIHKSQGSEFPVVVIPITWGPPMLLTRNLLYTAVT 705 Query: 572 RARRRLSLYADERILSAAIATRT--ERRSGLAALF 604 RAR + L E L + ER SGL Sbjct: 706 RARSLVVLVGVESYLKKMVDNNKIIERYSGLGRRL 740 >UniRef50_C1AXR1 Exodeoxyribonuclease V alpha chain n=5 Tax=Nocardiaceae RepID=C1AXR1_RHOOB Length = 623 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 205/623 (32%), Positives = 293/623 (47%), Gaps = 37/623 (5%) Query: 6 QLLEAVEHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN-N 61 L E L DV AL + G+ V LA AL G VCL L+R+ Sbjct: 13 MLRVFNEAGVLAAADVHVALRLSALGGESSEDVVLATALAVRAVRSGSVCLDLTRIREVT 72 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAV--SRGDEPTPMIL----CGDRLYLNRMWCN 115 + E L S V P+ L G LYL+R + Sbjct: 73 VDEESEVDLDALPWPEDSTVVAALRRSPLVTGGPAGPLRPLRLVDTAEGGLLYLDRYFRQ 132 Query: 116 ERTVARFFNEVN-HAIEVDEALLAQTLDKLF-------PVSDEINWQKVAAAVALTRRIS 167 E T+ R +E VDE L + LD+LF + + Q++AAAVA T+ S Sbjct: 133 EATIRRVLDERAVGYPLVDERSLREGLDELFRDQHDHTAPAPSPDRQRIAAAVAATQWTS 192 Query: 168 VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 V+ GGPGTGKT TVA+LLA L + G RI LAAPTGKAAARL ES+ + L L Sbjct: 193 VVVGGPGTGKTHTVARLLALLTRQ-PGPGRRIALAAPTGKAAARLQESVREQADALGLPP 251 Query: 228 EQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 E +A TLHRLLG Q G R R +A N L DV+VVDE SM+ L MM RL+ A+ Sbjct: 252 EL------NAMTLHRLLGWQRGRGARFRFNANNHLPYDVIVVDETSMVSLTMMCRLLAAV 305 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA-----RQLSRLTGTHVPAGT 341 R++ +GD DQL SV+AGAVL D+ A +G L A + Sbjct: 306 RPDTRLVLVGDPDQLTSVDAGAVLADLVARPVSGTENPVLGRVVGADLDAADDPLEAALS 365 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 +E LR + L + RFG GI +LA A+ G++ V + + + G Sbjct: 366 ASERDRLRGGVVRLSRGRRFG--GGIAKLAVAVRDGEEELVIDILRGG---GAPEVSFHG 420 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 + + L + + + +Q +++LLCA REGP+GV + ++ Sbjct: 421 PEDLDALRADVVATAAAVTDSAESGDASAALQHSEKHRLLCAHREGPYGVQRWARQAMEW 480 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKS 521 + + P WY G+P+M+ ND ++NGD G+ + R + Sbjct: 481 IGETTGQRLDPDR-WYPGQPLMVTANDHETKIYNGDTGVIVRRDDDELFAAFVRGTEPFL 539 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 + P+ L +T +AMT+H+SQGS++D +++LP + ++TREL+YTA+TRAR + + Sbjct: 540 LHPTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGAASSLLTRELLYTAITRARNHVRIIG 599 Query: 582 DERILSAAIATRTERRSGLAALF 604 E + A + R R SGL Sbjct: 600 TEDAVRAGVQRRVLRASGLRRAI 622 >UniRef50_A6DNF1 Exonuclease V (RecBCD complex), alpha chain n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNF1_9BACT Length = 601 Score = 407 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 216/612 (35%), Positives = 322/612 (52%), Gaps = 38/612 (6%) Query: 15 QLRPLDVQFALTVAG-----DEHPAVTL--AAALLSHDAGEGHVCLPLSRLENNEASHPL 67 +D QFA ++ H TL +LS+ A + H LPL + + Sbjct: 7 IFSEIDRQFAQFISQRAGELSAHELETLEDICLVLSYYANQQHSVLPLRDILIEYRNEDG 66 Query: 68 LATCVSEIGELQNWEECL-LASQAVSRGDEPTPMI--LCGDRLYLNRMWCNERTVARFFN 124 VS + + E+ L + Q + +GDE P+I L +YLN+ + E TVARF + Sbjct: 67 --HIVSHNIDFELDEQALKIYRQVMGQGDETKPLIVDLENQLIYLNKYYRAEATVARFIS 124 Query: 125 EVNHAIEVDEALLAQTLDKLFP--VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 ++ + + L Q L+++FP ++ +INWQKVAA +AL R VISGGPGTGKTTTV Sbjct: 125 KLADQTQELDGQLTQKLNEVFPNQIAGKINWQKVAAFMALRSRFCVISGGPGTGKTTTVG 184 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK----ALRQLPLTDEQKKRIPEDAS 238 K+LA L++ RI L APTGKAA RL ES+ + + +IP A Sbjct: 185 KILALLLEQ--NPATRIDLLAPTGKAADRLGESIRNFISSQSDEKAFSAATLAKIPVQAQ 242 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HR LG PG +HH D+L++DE+SM+ L + +I AL H RVI LGD+ Sbjct: 243 TIHRYLGFAPGGG-FKHHDKFKTPSDILLIDESSMVPLTLFRSVIQALQSHCRVILLGDK 301 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQLA+VE G VLGD+ A + + + + + SL+D + L+ S Sbjct: 302 DQLAAVETGNVLGDLTAGGQINSFSPTFAKELKELSSELILNEDQSMGSLQDIMVKLEHS 361 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQ--QDFTDIEKRLLQSGEDYIA--MLEEALAG 414 +RF S SGIGQLA +N Q + + DI + L + + + + + Sbjct: 362 FRFDSSSGIGQLARDVNEQPVPHPLEDTQYFKAYDDIAHQALPAKAEELFSGAIRQCFTE 421 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 Y + L P+ ++A N++++LCA R G FG + LN+ I Q I Sbjct: 422 YKKSLR------SPEEALKALNKFRILCASRNGSFGASKLNQHISQI------IFSQSDE 469 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEHETT 533 Y+GR +MI RND + L+NGDIGI L G + WF PD +++S PS LP++++ Sbjct: 470 SLYKGRAIMITRNDYNIKLYNGDIGIILPDDSGLPKAWFPGPDNSLRSFPPSMLPDYQSA 529 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +AMT+HKSQGSE+ + LILP Q ++++EL+YT +TRA+ + +YA + L + + Sbjct: 530 FAMTIHKSQGSEYQNVHLILPDQADRLLSKELIYTGITRAKSAIVIYASRKTLLSTCKRQ 589 Query: 594 TERRSGLAALFS 605 T+R SGL Sbjct: 590 TDRLSGLLLRMK 601 >UniRef50_A8SM75 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SM75_9FIRM Length = 739 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 134/631 (21%), Positives = 237/631 (37%), Gaps = 103/631 (16%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSH--DAGEGHVCLPLSRL 58 + +L++ V+ D + + + + A + GHV P +L Sbjct: 175 ENPYKLIKNVKGIGFLKADEIALKNNLDKNSPYRIESAILYVLTQKAINFGHVYYPKEKL 234 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 N + + T + E + LL+S+ V +YL+ ++ +E Sbjct: 235 TNEVSKLIGVETELIEPVYMNL----LLSSEVVIDNS------FEESNIYLDYLYVSESY 284 Query: 119 VARFFNEVNHAIEVDE--ALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGT 175 +A ++ + + + + + +S Q A IS+I+ Sbjct: 285 IASKLAKMALNDDFKILFDIEKEIKEAIKSLSIKLSKIQIDAIKSCFEENISIIT----G 340 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T ++ + ++ I L APTG+AA R+ E+ G Sbjct: 341 GPGTGKTTIINTISKIYLDNGYNISLCAPTGRAAKRIEETTGI----------------- 383 Query: 236 DASTLHRLLGAQPGS----QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 +A T+HR+LG P S ++ NPL DV+++DE SM+D+ + +L+ + D+ R Sbjct: 384 EAKTIHRMLGYIPSSYDDIGHFEYNEDNPLDTDVIIIDEMSMVDVVLFEKLLRGMKDNTR 443 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 ++ +GD DQL SV AG VL D+ +T Sbjct: 444 LVIVGDVDQLPSVGAGNVLRDLINSKKIKYTK---------------------------- 475 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 L +R S I A IN G + + DF ++ + + Sbjct: 476 ---LVDIFRQSESSNIIVNAHKINNGQEPILNEK-NSDFFFLKTETPAITRNVV------ 525 Query: 412 LAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH 471 +DL+ R + Q+L R+G GV LN ++ + K + Sbjct: 526 -------VDLISKRLPNAYGYDFSKDIQILTQSRKGICGVFELNRLLQDILNPKTETTDE 578 Query: 472 ---PHSRWYEGRPVMIARNDSAL-----------GLFNGDIGIALDRGQ-GTRVWFAMPD 516 + + VM +N+ L G++NGD+G + + ++ M D Sbjct: 579 LLVGNKLFRVNDKVMQTKNNYNLSFFDSDGEENFGVYNGDMGHIIFIDKSSKKLTVEMDD 638 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 + L E +A+T+HKSQGSEF + + + TR L+YTA+TRA+ Sbjct: 639 KRVIDYTLEDLDNLELAYAITIHKSQGSEFKSVIIPMFDGYRLLQTRNLLYTAITRAKEN 698 Query: 577 LSLYADERILSAAIATRT--ERRSGLAALFS 605 + L D+ +++ I T R S L Sbjct: 699 IILVGDKNVMNNMIRNNTINSRYSNLENRIK 729 >UniRef50_C0ZAR4 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAR4_BREBN Length = 753 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 141/642 (21%), Positives = 233/642 (36%), Gaps = 124/642 (19%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAG--EGHVCLPLSRLEN 60 +L+E V + D + A +A V AA + +A EGHV LP+ L Sbjct: 196 PYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFMLQEASYSEGHVYLPVEELCE 255 Query: 61 NEASHPLL-ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 V ++Q E L S ++ +R+YL ++ E + Sbjct: 256 KTLRLLEECGGHVFSGDDIQLAVEALFVSSKIA---------WEDERVYLPSLFFAELGL 306 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRIS------- 167 A+ E ++ L V DE+ Q+ A A+ + Sbjct: 307 AKRLRHFASRDEFGTFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPG 366 Query: 168 -----VISGGPGTGKTTTVAKLLAAL-------IQMADGERCRIRLAAPTGKAAARLTES 215 VI G + ++ + L + + I L APTG+AA R+TE+ Sbjct: 367 TGKTTVIRG---------ICRVFSQLHGLSLDLKKYNEENPFPIVLVAPTGRAAKRMTET 417 Query: 216 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 G A T+HRLLG + S H A +P+ +L+VDE SM+D Sbjct: 418 TG-----------------LPAMTIHRLLGYKGES--FEHDAEHPIRGRLLIVDEMSMVD 458 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 + + ++L A+PD ++I +GD DQL SV G VL D+ Sbjct: 459 IWLANQLFRAVPDDMQIIMVGDPDQLPSVGPGNVLLDMIRSGLLP--------------- 503 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK 395 L L + YR +S I +LA + +G+ A D Sbjct: 504 ----------------LVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTS 547 Query: 396 RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 + E + A+ + Q+L + +G GV LN Sbjct: 548 LPQEVPEAVKQICFGAVKK-----------------GYTAKDVQVLAPIYKGNAGVNRLN 590 Query: 456 ERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQ 506 E +++ K ++ + + G V+ N++ +FNGD+G + + Sbjct: 591 EELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIVAIFFPNENAE 650 Query: 507 GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 + A D + S + + +VHKSQGSEF + ++ R+LV Sbjct: 651 NQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLV 710 Query: 567 YTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSS 606 YT +TR++ L + + AA+ + E R S L Sbjct: 711 YTGITRSKSFLIMCGEPDAFRAAVESDEEGVRYSYLEERLKQ 752 >UniRef50_C7RH25 Helicase, RecD/TraA family n=4 Tax=Anaerococcus RepID=C7RH25_ANAPD Length = 719 Score = 404 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 136/624 (21%), Positives = 240/624 (38%), Gaps = 101/624 (16%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLS--HDAGEGHVCLPLSRL 58 +L+E + D + + + ++ + GH CL + L Sbjct: 175 ANPYKLIEDIRGVGFTMADNIAINMQMDLTSKFRISAGVYYILNTEAEFNGHTCLKYNTL 234 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 A+ L + + L + + +Y + + E++ Sbjct: 235 SQKSANLLKLEEGRIKEVINDDIIAGKLVLVEIEDI----------NYIYSSNLLKAEKS 284 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 VA + + + L S + QK+A A + VI+ G Sbjct: 285 VAMAIASKINEKYGFDVKIDYDL------SVFSDEQKIAIEKAFESMVLVIT----GGPG 334 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T ++ A+ ++ L APTG+AA R+ ES G EDA Sbjct: 335 TGKTTIINAICKILSQNGLSYALTAPTGRAAKRIKESTG-----------------EDAY 377 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+HRLLG +P + NP+ D ++VDE SM+D+ +M L+ A+ D +I +GD Sbjct: 378 TIHRLLGIRPDEVVAEFNEENPIDKDYIIVDETSMVDIFLMKNLMAAIGDKTAIILVGDS 437 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL SV G VL DI L+K Sbjct: 438 DQLPSVGPGNVLKDILNT--------------------------------NVESVRLKKI 465 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R S I A IN+G + +DF I+ + D+I++L Sbjct: 466 FRQAGKSNIIVNAHRINQGKYPILNEK-DKDFFFID----TAASDFISVLT--------- 511 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 L++ R + Q+L ++ +GV +N+ I++ + +++ + + + + Sbjct: 512 -SLVKERLTKYYNFDPIKDIQILSPSKKTDWGVVNINDHIQESINKEKNLLKINNKIFKL 570 Query: 479 GRPVMIARNDSAL-----------GLFNGDIGIALDRGQ-GTRVWFAMPDGNIKSVQPSR 526 VM RN+ L G++NGDIGI + + + DG + + Sbjct: 571 NDKVMQVRNNYDLKSINHEEDYDEGVYNGDIGIIENIDKIDESLDVRFDDGRLIRYKKED 630 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 + + + ++A+T+HKSQGSEF + + ++TR L+YT VTRAR+ + L +++IL Sbjct: 631 IKDLDLSYAITIHKSQGSEFPCVIIPMMQVAPMLLTRNLLYTGVTRARKIVILLGNKKIL 690 Query: 587 SAAIATR--TERRSGLAALFSSRE 608 + R + L+ E Sbjct: 691 KTMVDNNKSNRRFTNLSYWIGEME 714 >UniRef50_UPI0001C37B34 RecD/TraA family helicase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37B34 Length = 732 Score = 404 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 139/617 (22%), Positives = 242/617 (39%), Gaps = 100/617 (16%) Query: 15 QLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLATC 71 + + D A + ++ + A L L + GH CLPL L + ++ Sbjct: 193 EFKKADT-IAHDLHIPKNSDKRVIAGLQYILRANTTLGHSCLPLDVLLTKAENALGISEK 251 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE 131 ++ L + + +YL + E +A + Sbjct: 252 ----DFYSSYNAALDDDELFEYIKNER------EYVYLPDYYYAESFIADRIKVLKDFTS 301 Query: 132 VDEALLAQTLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 ++ +D + Q+ A A++R + +++ G T L A+I Sbjct: 302 PEDFDFDALIDIEQEEHGIEYEELQRRAITSAVSRGLMILT----GGPGTGKTTTLNAII 357 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGA--- 246 + + R+ L APTG+AA R+++ G +A T+HRLL Sbjct: 358 SIFEKRGLRVLLTAPTGRAAKRMSDLTG-----------------YEAKTIHRLLEVVYD 400 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 + G H+ NPL DV+V+DE SM+D+ + +L+ AL ++I +GD DQL SV A Sbjct: 401 KGGRLTFAHNENNPLDCDVIVIDEMSMVDVLLFEKLLRALRLGCKLIMVGDSDQLPSVGA 460 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G +LGD+ A ++ LQ+ +R S Sbjct: 461 GNLLGDLIASQ-------------------------------AVTVIKLQEIFRQARKSC 489 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I A I G+ + DF ++ ++ + + +DL + R Sbjct: 490 IVTNAHKIVSGELPDLSRK-DSDFFFFKRNSPEAVCELL-------------VDLARTRL 535 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVM 483 ++ Q++ R+G G +N+ +++ + K+ + + G VM Sbjct: 536 PKAYNYSPVDDIQIIAPSRKGTLGTVEMNKLLQEKINPHDDKKPEVKGKLFTFRLGDKVM 595 Query: 484 IARNDSAL----------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 RN+ + G+FNGDIG ++ TR DG + + L + E Sbjct: 596 QTRNNYDIIWKKDEEQGTGVFNGDIGKIININMMTRNVIIDFDGRLTAYPFDTLDQIELA 655 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI--A 591 +A+TVHKSQG EF+ + L + R L+YTAVTRAR+ L + E +S + Sbjct: 656 YAVTVHKSQGCEFEAVIMPLLGSFEKLCYRNLLYTAVTRARKLLIIIGSEEDISRMVENN 715 Query: 592 TRTERRSGLAALFSSRE 608 RT R + L + S+ + Sbjct: 716 RRTRRYTCLKKMLSTDQ 732 >UniRef50_Q8R8A3 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A3_THETN Length = 723 Score = 404 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 138/622 (22%), Positives = 244/622 (39%), Gaps = 106/622 (17%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL 58 ++ E V+ D A ++ A + + L L EGH+ LP++ L Sbjct: 176 ANPYKIAEEVDGIGFIKADE-IARKFGIEQDNAYRIQSGLKYTLYLAETEGHLYLPITTL 234 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + ++G + ++ L + A D+ ++YL + + NE+ Sbjct: 235 CKAA------SEKILKVGYTKVLDQALYLTAAQELYDDE-------GKVYLPKNFYNEKY 281 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTG 176 +A ++ + + + + + + QK A A+ IS+I+ G Sbjct: 282 IAEKIAKMLNEKPWRINNIDELIKEAEAAKNIRYSPKQKEAIKKAVENNISIIT----GG 337 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T +++AL+ + + + LA+PTGKAA RL E Sbjct: 338 PGTGKTTIVSALLYIFQKQDKLVALASPTGKAAKRLEEVTI-----------------YP 380 Query: 237 ASTLHRLLGAQPG----SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A T+HRLL A+ S R + NPL DV+++DE SM+D + + L AL ++ Sbjct: 381 AKTIHRLLEARFDKEFRSVRFFRNENNPLDEDVVIIDEFSMVDNELAASLFKALRKDTKL 440 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV AG VL D+ + Sbjct: 441 VIIGDMDQLPSVGAGNVLRDLIESGIIP-------------------------------V 469 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L +R G SGI + I G + I L++ + ++E Sbjct: 470 TKLDVIFRQGETSGIILNSKLIREGKMVRF-----NNKDFIFHELVKPEQVVDEFIKELE 524 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIH 469 G + ++ Q+L +++ G LN I++ + +++ Sbjct: 525 KG------------------KTLDDVQILTPMKKTDIGTLELNRLIQERINPPHPQKEEI 566 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGTRVWFAMPDGNIKSVQPSR 526 + + G VM +N+ +FNGD G +G R DG I + Sbjct: 567 AYGSKIFRVGDKVMQTQNNYEKEIFNGDTGYVKRAYRDEEGLRHVVIDFDGRIVDLVEEE 626 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L E +A+T+HKSQGSE+D ++L ++ R L+YTAVTRA+ + ++ D + + Sbjct: 627 LKEIIPAYAITIHKSQGSEYDTVIVVLAMNHYIMLKRNLLYTAVTRAKNVVKIFGDMQAI 686 Query: 587 SAAIAT--RTERRSGLAALFSS 606 AI T ++R + L + Sbjct: 687 KIAINTIDSSKRYTALKERLKN 708 >UniRef50_Q480P0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480P0_COLP3 Length = 769 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 204/691 (29%), Positives = 315/691 (45%), Gaps = 128/691 (18%) Query: 38 AAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE-------------- 83 LS GH CLPLS + + +T N ++ Sbjct: 72 LFLALSASLRAGHSCLPLSEVADQHWGKGFTSTKKKNNVNKDNQQDSEGLTEEHTQELSH 131 Query: 84 -----------CLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN-EVNHAIE 131 ++ S+ + ++L D+LYL R + E + + + + Sbjct: 132 AGFVFAPLTQLQVMLSELNILASDQQLLVLQHDKLYLRRYFQFESDLGEAIHARLLQQCQ 191 Query: 132 VDEALLAQTLDKLFP-----------VSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 D + Q + KLFP S EI+WQKVA A A+ + SVI+GGPGTGKT T Sbjct: 192 YDNDSIGQCIGKLFPNDLAQVEAQDVESLEIDWQKVAVANAINKNFSVIAGGPGTGKTYT 251 Query: 181 VAKLLAAL--------------------IQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 V KLLAAL + I L APTGKAA RL+ES+ A+ Sbjct: 252 VTKLLAALVMLEQMGLAKTGKQQAEVAQQKQQGTAVLNIALVAPTGKAAQRLSESIVNAI 311 Query: 221 RQLP--LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 + D+ IP A TLHRLLG P S RHH N L D++++DE SM+DLP+ Sbjct: 312 SGFKNLIDDKVLAEIPTQAQTLHRLLGVLPNSPNFRHHQDNRLPYDIVLIDEVSMVDLPL 371 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG---- 334 M+R+ AL D A+VI LGD DQL SV AG+VL DI + GF+ E + L+++ Sbjct: 372 MTRVFRALKDTAKVILLGDADQLPSVAAGSVLADIAPRPHGGFSLENEQYLAQVCQLLPA 431 Query: 335 ------THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 + + + S D L L KS RF GIG +A ++ +GD + Sbjct: 432 QVSDYFSAHRLPSQSAEQSSFDYLTFLVKSRRFDGKGGIGLIANSVIKGDVKRSWRLLND 491 Query: 389 DFT------DIEKRLLQSG-----------EDYIAMLEEALAGY-----GRYLDLLQARA 426 + I+ LQ+G + + + L + +Y ++ + Sbjct: 492 SLSQSTQEGFIQGDYLQAGYLQGDKSQKQQPSQLTLAQGDLTTWLAPLVKQYYQPIEHCS 551 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIAR 486 +++++LCA R+G +GV LNE I+ ++ + ++ Y G+P+MI Sbjct: 552 TVSDAFVLLSQFRVLCATRQGDYGVERLNEVIKSYLGKNNAPYQQHQQTLYHGQPIMINE 611 Query: 487 NDSALGLFNGDIGI---ALDRGQGTRVWFAMPDG--------------------NIKSVQ 523 ND LGL+NGDIGI +D+ T + D I+ + Sbjct: 612 NDYRLGLYNGDIGIIWKVIDQAGKTHLMACFEDTTLESKSAESKVDESTETSQLTIRQIL 671 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ--------------RTPVVTRELVYTA 569 PSRLP+ E+ +AMT+HK+QGSEF H A+++ + + +++REL+YT Sbjct: 672 PSRLPQFESVYAMTIHKTQGSEFSHVAMVISATQSEQQTLQQGKQQGGSRLLSRELLYTG 731 Query: 570 VTRARRRLSLYADERILSAAIATRTERRSGL 600 +TRA+++L++ A++R+ + + +R SGL Sbjct: 732 ITRAKKQLTIAANQRVWQQGVTAQVKRHSGL 762 >UniRef50_C8P085 RecD/TraA family helicase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P085_ERYRH Length = 711 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 131/616 (21%), Positives = 245/616 (39%), Gaps = 99/616 (16%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA--LLSHDAGEGHVCLPLSRL 58 + +L+ V+ + D V +L A D+ V + G G + +L Sbjct: 180 ENPYRLVYDVDGIGFKTADKVAMSLGYALDDPLRVEALVLDRYKTICLGAGDSFITKDKL 239 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + + +++ + L+ S ++ GDRLY + +E Sbjct: 240 FDGVR--------MGDAERVESAYQALVQSGE---------LVEDGDRLYHRTQYDSEVY 282 Query: 119 VARFFNEVNHAI-EVDEALLAQTLDKLFP--VSDEINWQKVAAAVALTRRISVISGGPGT 175 V + + ++ + D L + + + + Q+ A L + +++GGPGT Sbjct: 283 VTQTLKDFKYSGYDFDLDDLESKIASIESQLRIEFDDTQREAIESFLREDVMILTGGPGT 342 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 GK+T ++ ++ L A+ I L APTG+AA RL E Sbjct: 343 GKSTLLSGVVTLL--QANCPWLHITLCAPTGRAAKRLEELTN-----------------V 383 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 A+T+H +L S + H NPL D+L++DE SM+D +++ ++ A +++F+ Sbjct: 384 QAATIHSVLKWDLESNKFGMHEENPLETDILIIDEFSMVDTWLLAHILKASEKVKKLLFV 443 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD+DQL SV +G VLGD+ A L Sbjct: 444 GDKDQLPSVSSGFVLGDLIASKV-------------------------------FKTISL 472 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 +++YR + S + LA +N+G + +D + R + + +++EA+ Sbjct: 473 ERNYRQEAGSEVIDLAVNMNQGLLDVSN--YHRDVRFFDSRYGSVKDIVLKVVDEAMQR- 529 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRHP 472 ++ Q+L + GP G+ LN +++ ++ + Sbjct: 530 ----------------GYDLSDIQVLAPMYSGPAGIDNLNHFLQKMCNPESPQKAQIMYG 573 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHET 532 + EG ++ +N +FNGDIG+ ++ DGN +PS Sbjct: 574 TRIFREGDKILQLKNQPDDFVFNGDIGMLVEVEAKR--LVVDFDGNFVEYEPSSYINITH 631 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 +AM+VHK+QGSE+ L+ +++R L YT TR+ + L L + + A+ Sbjct: 632 AYAMSVHKAQGSEYPIVILVAVRDFYRMLSRRLYYTGATRSSKSLVLVGELEAFNTAVKN 691 Query: 593 --RTERRSGLAALFSS 606 +R + L Sbjct: 692 HHEAKRNTYLTERLQE 707 >UniRef50_A1HT63 Helicase, RecD/TraA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HT63_9FIRM Length = 719 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 162/616 (26%), Positives = 243/616 (39%), Gaps = 95/616 (15%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENN 61 +L V+ R D + AL +A + +T L A GH C+P L Sbjct: 180 PYRLALEVDGIGFRTADHIAMALGIATNHPGRLTAGIHFALLQTAQAGHCCVPEELLVQE 239 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 A + + + + L ++ + +Y ++ E+ VA Sbjct: 240 TAKLLQVDQYEAAMT----LDRLLKENRLCVEDYHGLRL------IYPEYLYYAEKRVAE 289 Query: 122 FFNEVNHAIE----VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGK 177 + + D A A ++ + + QK A AL + V++GGPGTGK Sbjct: 290 RLLRLKAKAKPVRTADYAAAAAAWEQGAGL-ELAAAQKEALVSALAYGVLVLTGGPGTGK 348 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 TTTV +LA L + +I LAAPTG+AA RL+E+ G+ +A Sbjct: 349 TTTVRGILAVL----EDAGLKIVLAAPTGRAAKRLSETTGR-----------------EA 387 Query: 238 STLHRLLGAQPGSQR---LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 T+HRLL A G + NPL DV++VDE SM+D+ +M+ L+ A+PD R++ Sbjct: 388 QTVHRLLEAGGGEDGAPYFARNEDNPLDADVVIVDEVSMMDIVLMNHLLRAIPDGCRLVL 447 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL +V G+VL D+ + Sbjct: 448 VGDVDQLPAVGPGSVLKDVIRCGRLP-------------------------------VVR 476 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L + +R +S I A INRG + F +I + EE Sbjct: 477 LTEVFRQAGESIIVHNAHRINRGLVPDCRKDANFQFREIAGDEAVAEAIVRLCREEL--- 533 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI---HRH 471 P + Q+L + GV LN ++ + + Sbjct: 534 -------------PAAGYDVLRDVQVLSPMHRLVCGVENLNRLLQGALNPPDPAKGWIQA 580 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHE 531 + EG VM RN+ G+FNGDIG G V PDG + L E + Sbjct: 581 VNQTLREGDKVMQIRNNYTKGVFNGDIGFIAAIDDG-VVIVRYPDG-PVMYERGELDELQ 638 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +AM+VHKSQGSE+ L L ++ R L+YTAVTRA+ R+ L + L+ A+A Sbjct: 639 LAYAMSVHKSQGSEYPVVILPLVPGHRIMLQRNLLYTAVTRAKERVILLGSKAALNTALA 698 Query: 592 TR--TERRSGLAALFS 605 R S LA Sbjct: 699 NDRTRRRYSLLAERLR 714 >UniRef50_A6NZ80 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NZ80_9BACE Length = 738 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 148/632 (23%), Positives = 241/632 (38%), Gaps = 100/632 (15%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 L++ + D + + GD+ + LSH+ GH LP +L Sbjct: 182 SNPYLLVDEELGVRFDQADELALDQGMEGDDPQRLEAGLLFELSHNLNNGHTFLPRRKLL 241 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 A L ++ L + E L+ V + + + +YL ++ E V Sbjct: 242 AATAQLLGLE----DLDTLGDGLEALIERGEVIQEETAG-----EEAVYLFDLYEAECFV 292 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGK 177 A+ E++ + + +D++ Q+ A +A ++ +++ G Sbjct: 293 AQRLAEMSREELLPPEDMDTVIDRIQRDQGITYAPQQRSAVELAARSQVMLLT----GGP 348 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 T L ++ + D LAAPTG+AA RL E G +A Sbjct: 349 GTGKTTSLRGVLALFDHMGLDTALAAPTGRAAKRLGELCGM-----------------EA 391 Query: 238 STLHRLLGAQPGSQR----LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 T+HRLL Q H PL D ++VDE SM+D+ +M L+ AL R++ Sbjct: 392 YTIHRLLETQFDPGTGKLVFAHDESEPLKADAVIVDETSMVDVTLMRALLSALRGECRLV 451 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD DQL SV G VL D+ Sbjct: 452 LVGDPDQLPSVGPGNVLSDLIRSGRVP-------------------------------TV 480 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L + +R + S I A ++NRG+ + +DF + + D I Sbjct: 481 RLTEIFRQAAQSAIVMNAHSVNRGELPDLHNSAAKDFFFLRRTDPVRVADTI-------- 532 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHR 470 ++L + R + I ++ Q+L R G A LN I++ + + R Sbjct: 533 -----VELCKTRLPEKMGI-PADQIQVLSPTRRHTTGTASLNRSIQEAVNPAQPGKAERR 586 Query: 471 HPHSRWYEGRPVMIARNDSA------------LGLFNGDIGIALDRGQGTRVWFAMPDGN 518 + EG VM RN+ +G+FNGDIG+ + V +G Sbjct: 587 FGEYIFREGDRVMQVRNNYDIMWRGKDNTDTGMGIFNGDIGVIVKVDNRDEVITVDFEGR 646 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 P L E E +A+TVHK+QGSE+ L ++TR ++YTA+TRAR Sbjct: 647 TVEYTPDMLMELEPAYAVTVHKAQGSEYRAVILAALDGAPMLLTRGVLYTAITRARELFI 706 Query: 579 LYADERILSAAIATR--TERRSGLAALFSSRE 608 + DE ++ ++ R SGL A +S E Sbjct: 707 VVGDEGKVAQMVSNNRQQRRYSGLRARLASIE 738 >UniRef50_B0UUC7 Exodeoxyribonuclease V, alpha subunit n=9 Tax=cellular organisms RepID=B0UUC7_HAES2 Length = 674 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 199/684 (29%), Positives = 317/684 (46%), Gaps = 94/684 (13%) Query: 3 LQKQLLEAVEHKQLRPLDVQFALTVAGDEHPA---------VTLAAALLSHDAGEGHVCL 53 + L + E K ++ D FA +A + L AAL + +GH CL Sbjct: 1 MLNILYQLKERKFIQAGDYYFAKLIADKQRELDYSSQVKNLAILLAALCNFHNQQGHTCL 60 Query: 54 PLSR--------LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRG--DEPTPMILC 103 + L E S+ + W+ L+ A ++ +E P++L Sbjct: 61 KIENFSFRNLFNLPYAEKSYLIDIKEKIGNITQSEWQNLLINHIAFTQDPINEVKPLVLQ 120 Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQT---LDKLFPVSDEIN-------W 153 +RLY R W +E +A F E + + L K FPV E N W Sbjct: 121 NNRLYFYRTWQDEHRIAEFLIRTIKQKENQPYPIEKIQGILQKYFPVEHEDNSLKQKHNW 180 Query: 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---------RCRIRLAAP 204 QK+A A A+ + +I T + + IRL AP Sbjct: 181 QKIAVATAIHQPFCMI----------TGGPGTGKTTTVTRLLLALQELAEGKLVIRLVAP 230 Query: 205 TGKAAARLTESLGKALRQLP------LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAG 258 TGKA+ RL S+ + L +++ K IP +A T+H L+G + ++ +++ Sbjct: 231 TGKASERLKISMKNSFNLLTKKELIKVSEHIKNAIPFNAETIHSLIGVRFFEEKTKYNKR 290 Query: 259 NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYAN 318 NPL +D+LVVDEASM+DL +M++L+ AL ++I LGD+DQL+SVEAGA+L ++ + Sbjct: 291 NPLPIDLLVVDEASMVDLFLMAKLLQALKPSCKLILLGDKDQLSSVEAGAILAELGTFRQ 350 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD 378 +++ A L + TG ++ + +RD LC L+ S RFG IG+LA IN+ Sbjct: 351 YSISSKLADYLQQTTGENLE--HHADENLIRDCLCNLEGSRRFGKHPYIGKLAQLINQQK 408 Query: 379 KTAVKTVFQQ-------------DFTDIEKRLLQSGEDYIAM------------LEEALA 413 +F Q + D + Q+ D + ++ A+ Sbjct: 409 IAESWQLFHQYQQENNTNDTGEINLVDYSTQYEQTNIDEQPLAHHYSQYCSQLVVQSAVQ 468 Query: 414 GYGRYLDLLQA--------RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 Y YL L+ + I AFN+ + L ALR G G LN+ I + +++K Sbjct: 469 NYEEYLQLIHKITENNLPIKLHIAAIFAAFNKVRFLTALRVGELGSENLNQLIAEQLKKK 528 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT---RVWFAMPDGNIKSV 522 + + +Y G+P++I N+S LGL NGDI + L Q + F +G + Sbjct: 529 GLVQFNHSRDFYIGKPIIITENNSRLGLANGDIALYLAEKQPDGSLKGHFWFENGKAE-- 586 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 SR+PEH + MT+HKSQGSEF H ++LP + PV+ +ELVYT VTRA ++++++D Sbjct: 587 LASRIPEHSPAFTMTIHKSQGSEFSHTFVVLPCEANPVLCKELVYTGVTRAINQVTIFSD 646 Query: 583 ERILSAAIATRTERRSGLAALFSS 606 +I + A++ TER+SGL + Sbjct: 647 RKIWNMAVSKATERQSGLGEVLRK 670 >UniRef50_C9KLF6 Helicase, RecD/TraA family n=3 Tax=Veillonellaceae RepID=C9KLF6_9FIRM Length = 740 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 144/617 (23%), Positives = 227/617 (36%), Gaps = 96/617 (15%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSH-DAGEGHVCLPLSRLENN 61 QL VE D + +L +A D+ + A +GH C+P + LE Sbjct: 198 PYQLASEVEGIGFVIADSIAMSLGIAADDRSRIAAGIDFALQKIAQQGHCCIPEAALEKQ 257 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + + ++ LA + V +Y ++ E AR Sbjct: 258 ASDLLKVEQASVRKVLQDLLQDKQLAVEYVG----------SETLIYPPYLYRAEIKAAR 307 Query: 122 FFNEVNH-----AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 + A+E D L +++ + + QK A L + V++ G Sbjct: 308 KLLYLQKYADPIAMEADPTTLVARWEQIAGIR-LADKQKEALEDVLQYGVFVLT----GG 362 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T ++ +I + + + L APTG+AA RL E+ G + Sbjct: 363 PGTGKTTVVRGMIDLLHLQGLTVLLGAPTGRAAKRLAEATG-----------------QK 405 Query: 237 ASTLHRLLGAQP----GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A T+HR+L AQ G+ + L DV+++DE SM+D+ +M + A+PD A V Sbjct: 406 AVTVHRMLEAQGAGGSGAPTFGKNEDEQLEADVIILDEVSMMDISLMQHFLAAVPDGAHV 465 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 IF+GD DQL SV G VL DI Sbjct: 466 IFVGDVDQLPSVGPGTVLRDILRSGVIPS------------------------------- 494 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L +R +S I A AIN G D + + E A + E Sbjct: 495 VCLTDIFRQKGESSIVMNAHAINAGRLPVCSPQG-----DFQFWEIDDEEAVAAQIVELC 549 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIH 469 P + Q+L + G LN+ ++ + K R Sbjct: 550 TKV-----------LPQQGFSPLTDIQVLAPMHRLSCGTDNLNKVLQAALNPKSPQRPEL 598 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPE 529 + + G V+ +N+ +FNGDIG + G R+ D + E Sbjct: 599 TNAAQTFRLGDKVIQTKNNYTKQVFNGDIGFVMAIEPG-RMTVHFSDELEVDYENGEFGE 657 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 +A+TVHKSQGSE+ L L T ++ R L+YTAVTRA+R + L + L+ A Sbjct: 658 LALAYALTVHKSQGSEYPVVILPLVRSHTIMMQRNLLYTAVTRAKREVVLLGSKAALNTA 717 Query: 590 IATR--TERRSGLAALF 604 + ++R + LA Sbjct: 718 VGNNRTSKRYTLLAERL 734 >UniRef50_C7H0P7 Helicase, RecD/TraA family n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0P7_9FIRM Length = 741 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 139/625 (22%), Positives = 235/625 (37%), Gaps = 102/625 (16%) Query: 7 LLEAVEHKQLRPLDVQFA-LTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEAS 64 L++ ++ +D A L + D V + +AG GH LP L + A+ Sbjct: 188 LIKDIDGIGFLKVDKTVANLGLKYDSEKRVRAGILHIIENAGNLGHCYLPQEELVKSAAA 247 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + + +N + G R+Y M+ E +A + + Sbjct: 248 LLGVDDDIV----TENLLPLAATNDIFIEEGSE------GRRIYPFNMYTFEENLAVYIS 297 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 +++ A D + L V+ Q+ A + + IS+I+ G T Sbjct: 298 KLSKAETDDLRVDINNLIDEAEVTKGIRLSPMQRKAVSACMEESISIIT----GGPGTGK 353 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 ++ ++ + + +AAPTG+AA R+TE+ +A T+H Sbjct: 354 TTIIYTILSILKSAGKNVEIAAPTGRAAMRITETS-----------------SFEAKTIH 396 Query: 242 RLLGA--QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 RLL + ++ NPL D L++DEASM+D+ + L A+ R+I +GD D Sbjct: 397 RLLEYGGTESGKGFARNSKNPLECDALIIDEASMVDVILAYSLFKAIKPGTRIIVVGDSD 456 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL SV AG VL D+ ++ L + + Sbjct: 457 QLPSVGAGNVLADLIKSEVI-------------------------------NVIRLTEIF 485 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R S I Q A AIN T DF +E+ + + I L + A Y Sbjct: 486 RQNEKSMIVQNAHAINHRKFPICNT-EDGDFFFLERSENPAIINVIMNLCKNSAKRNGY- 543 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRW 476 ++Q+LC ++G G LN ++ + K + S + Sbjct: 544 -------------DPMQDFQVLCIQKKGECGTENLNSILQNMLNPKIDDNSEINYFGSVF 590 Query: 477 YEGRPVMIARNDSAL------------GLFNGDIGIALDRGQGTRVW-FAMPDGNIKSVQ 523 G VM +N+ L G+FNG+IG + + V G + Sbjct: 591 RIGDKVMHIKNNYDLKWHSNRTGERGRGIFNGEIGNIVFVSKADDVLAVEYTGGRVARYS 650 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 E + +A+TVHKSQG+EF + + + T+ L+YTAVTRA+ ++ L + Sbjct: 651 KPEFKEIQPAYAITVHKSQGNEFPVVIMPVVGAAPMLATKNLLYTAVTRAKDKVVLVGKK 710 Query: 584 RILSAAIATR--TERRSGLAALFSS 606 + + +R S LA + Sbjct: 711 TNIFYMLKNNFEEKRYSALAERLKN 735 >UniRef50_Q14LX3 Putative exodeoxyribonuclease v alpha subunit protein n=1 Tax=Spiroplasma citri RepID=Q14LX3_SPICI Length = 720 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 140/621 (22%), Positives = 246/621 (39%), Gaps = 94/621 (15%) Query: 2 KLQKQLLEA------VEHKQLRPLD-VQFALTVAGDEHPAVTLAAALL--SHDAGEGHVC 52 ++ L + ++ + +D + A + + A L G Sbjct: 173 QIYALLKKDPYSLLLKDNIAFKTIDKIYLAFEQEPFSNIRIGYYAWYLAKEFCNNNGDTY 232 Query: 53 LPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRM 112 L L+ L H + L S E +I D++Y+ + Sbjct: 233 LTLNELTKILQKH-------FSSLTKEQLLAGLKYS------KEIKLLIFKNDKIYVAEV 279 Query: 113 WCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVIS 170 + +E +A +N + D+ L + L+KL Q A A+ VI Sbjct: 280 YHSEINIAAMLVGLNTTDQYDDQKLTEELEKLTNKKQIIYNMNQTKAIKTAVHSNFLVII 339 Query: 171 GGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 GGPGTGKTT V +++ L ++ +I LAAPTGKAA RL E G+ Sbjct: 340 GGPGTGKTTVVDGVVSLLKKVYQQS--KIVLAAPTGKAAKRLREKTGR------------ 385 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 A T+H+LL + + ++ NPL D+L++DE SM+D +++++ A + Sbjct: 386 -----KALTIHKLLKYDALTNQFFYNENNPLENDILILDEVSMVDSLLLAQIAKASVNLR 440 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 ++I +GD +QL SV G +L DI Sbjct: 441 KLILIGDPNQLPSVACGDLLRDIIQSDV-------------------------------F 469 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 ++ L++ YR + + I +L+ AI + ++DFT I + Q+ Sbjct: 470 NVIKLEEVYRQEAGNDILELSYAIEQEHFEDNNLFDKKDFTFINETDSQA---------- 519 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK--RKI 468 L G + + E D N Q++ + GP G+ LN ++ M +K Sbjct: 520 LLTVVGDLYQNISNQYEADY-----NAIQVIAPMYNGPVGINALNTYLQNRMNHAVGQKE 574 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV--WFAMPDGNIKSVQPSR 526 + H + VM +N L ++NGD+GI +D + + + N+ + Sbjct: 575 IKIGHRFFRVNDKVMQLKNRPELEIYNGDVGIIIDIKKDKNLNDVILVKYDNVITYTKEL 634 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 + +A +VHK QGSE+D+ ++ ++ R L+YTA+TRA+ +L L + Sbjct: 635 YYDITLAYACSVHKLQGSEYDNIIFVITKSFWMMLKRNLIYTAITRAKTKLYLIGEPSAF 694 Query: 587 SAAIAT-RTERRSGLAALFSS 606 + +RR+ L + Sbjct: 695 LYGVNNLPQKRRTTLQEKIKT 715 >UniRef50_Q5WHN2 ATP-dependent exoDNAse alpha subunit n=2 Tax=Bacillus RepID=Q5WHN2_BACSK Length = 761 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 130/632 (20%), Positives = 233/632 (36%), Gaps = 103/632 (16%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSH--DAGEGHVCLPLSRL 58 L++ VE R D + A+ + G+ + L +GH+ L L Sbjct: 193 TNPYLLIQDVEGVGFRRADQLGAAIGLTGNHPERLRAGLLYLLRECCMQQGHLYLQEEAL 252 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + EL+ + +E ++ DR+Y+ ++ E+ Sbjct: 253 ITEGTALLSSPNVQIDASELEAI---------LIEMNEEGMLVREEDRIYMKSLYYAEKG 303 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI------NWQKVAAAVALTRRISVISGG 172 +A + E+ + ++K ++ N QK A A AL + +++GG Sbjct: 304 IATNIRRILSQ-ELTQEFTEADIEKTLGHIEDTHAVTYSNTQKEAIATALRSPLLLLTGG 362 Query: 173 PGTGKTTTVAKLLAALIQM---------ADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 PGTGKTT + ++ A + + ++L APTG+A+ R+ E+ Sbjct: 363 PGTGKTTVIKGIVEAYAALHGLSLEVAAYKNKSFPLKLTAPTGRASKRMAEAT------- 415 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 AST+H LLG + + L ++L+VDE SM+D + ++L Sbjct: 416 ----------ELPASTIHSLLGWKGSATGFEKGDHEQLEGELLIVDEMSMVDAWVANQLF 465 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 A+P +V+ +GD +QL SV G VL D+ Sbjct: 466 KAIPKGMQVVLVGDENQLPSVGPGQVLKDLLEADVIP----------------------- 502 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 L+ YR S I +LA ++ G + + D + Q + Sbjct: 503 --------TIQLKDIYRQAEGSSIIELAHSMKDGVLPSDFLTKKADRVFFPCQPNQVQQA 554 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 + E A+ + E Q+L + G G+ LN ++ Sbjct: 555 VWQICENAMKK-----------------GYSAKEIQVLAPMYRGQAGINELNTMLQSLFN 597 Query: 464 QKRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFAM 514 ++ R + +G V+ N+ G++NGD G + + Sbjct: 598 PAKEGRRELPFGDVVFRKGDMVLQLVNNPEEGVYNGDRGEIVAVFYAKETTEKKDQLVVS 657 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 DG + + + + ++HK+QGSEF + + S ++ R L+YT +TRA+ Sbjct: 658 FDGLEVTYEKKDFSQLTHAYCCSIHKAQGSEFPIVVMPVVSSYMRMLRRNLLYTGITRAK 717 Query: 575 RRLSLYADERILSAAIATRTE-RRSGLAALFS 605 + L L D + + AI E R S L Sbjct: 718 QYLLLCGDRKTMEQAIKHADEHRHSKLKERLQ 749 >UniRef50_Q03EZ9 ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03EZ9_PEDPA Length = 814 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 133/629 (21%), Positives = 236/629 (37%), Gaps = 104/629 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSR 57 + +L+E +E+ + D A ++ + A +L G + Sbjct: 203 ENPYRLVEDIENIGFKRAD-AIAASLNIKPDFEKRIQAGILEAIKTWCNATGDTYILADM 261 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L A I + V + + ++ ++YL ++ E Sbjct: 262 LLQEARKLLGTAVNAEAIADQ------------VLQLGKDGKVVGEDGQIYLKWLYNAEV 309 Query: 118 TVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE--INWQKVAAAVALTRRISVISGGPGT 175 ++ + + + + + + + Q A +AL+ +++I+GGPGT Sbjct: 310 AISYNVKRMVGESNSNVKGIKRAIKAAEKNLNLKYDDTQNAAIELALSHPLTIITGGPGT 369 Query: 176 GKTTTVAKLLAALIQM---------ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 GKTT V L+ + ++ + I+LAAPTG+AA RL++ Sbjct: 370 GKTTIVKGLINSFAELNDISLDINEYTESKFPIQLAAPTGRAAKRLSQVTN--------- 420 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 A T+HRLLG G+ L++ L D+LV+DE SM+D + S L++A+ Sbjct: 421 --------VPAKTIHRLLGLN-GNDDLQNDEIKQLEGDLLVIDEMSMVDTGLFSTLVNAI 471 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 +V+ +GD+DQL SV G + D+ Sbjct: 472 NPDMQVVLVGDKDQLPSVGPGQIFNDLIKSGKIP-------------------------- 505 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L K YR DS I QLA I +G T ++D + Q + Sbjct: 506 -----TISLTKIYRQEQDSSIIQLAHDIQKGVLPEDFTKNKKDKSFFLANANQIVDAIDQ 560 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-- 464 + ++A+ N+ Q+L + G GV +N +++ + Sbjct: 561 IAQKAVDKGISK-----------------NDIQVLAPMYRGSAGVDEINRHLQKVLNPPQ 603 Query: 465 --KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-----GQGTRVWFAMPDG 517 K K + + G V+ N +FNGDIG G+G DG Sbjct: 604 TDKPKKIESGNQTFRIGDKVLQLVNSPENNIFNGDIGEITGIVMEKQGKGRAHLVVDYDG 663 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 N + + L + + +++HKSQGSEF + + Q ++ R L+YT +TRA + Sbjct: 664 NEVTYAKTDLGQLTLAYCISIHKSQGSEFPVVIMPMVHQYYRMLQRNLLYTGLTRASNSI 723 Query: 578 SLYADERILSAAIAT-RTERRSGLAALFS 605 L + A++ + R + L + Sbjct: 724 ILLGEPDAYQRAVSNESSNRNTSLERRIN 752 >UniRef50_C2KY21 Possible exodeoxyribonuclease V alpha subunit n=1 Tax=Oribacterium sinus F0268 RepID=C2KY21_9FIRM Length = 759 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 144/642 (22%), Positives = 237/642 (36%), Gaps = 118/642 (18%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL 58 + ++ E +E + D A V ++ + A + L GH LP S L Sbjct: 182 ENPYRIAEELEGVGFKKCDE-LAKRVGVEKESPFRMRAGINYTLLQGEWHGHCYLPFSIL 240 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + E + + G+ +Y + E Sbjct: 241 KREAERILEMPLEDLEEQL--------------LELQLQGKVKVKGENVYRASTYYREMR 286 Query: 119 VARFFNEVN-HAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGT 175 VA ++N E + +DKL Q+ A ++A + + VI+ Sbjct: 287 VASRLLQLNVEEEEAHVDSWEKAIDKLLDREKITLDPLQRKAVSLAASSGVLVIT----G 342 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T + ++Q+ G+ I LAAPTG+AA R+ E+ Sbjct: 343 GPGTGKTTTIKTILQLFTGQGKSIALAAPTGRAAKRMGEAT-----------------DY 385 Query: 236 DASTLHRLLGA---------QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 A TLHRLL + + NPL DVL+VDE SM+DL +M L+ A+ Sbjct: 386 PAKTLHRLLEYMGREDQEQEDRDFSLFQRNEENPLEYDVLIVDEMSMVDLYLMDALLRAI 445 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 P R+I +GD +QL SV AG VL DI A Sbjct: 446 PVGCRLILVGDSEQLPSVGAGNVLKDIIASQ----------------------------- 476 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L+K +R +S I A IN+G + + +DF I + + + IA Sbjct: 477 --CMKTISLKKIFRQAMESDIVVNAHKINQGIEPDLGKK-SKDFFFIRGQEPKQILENIA 533 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 +L ++ + L + Q++ ++G GV LN +++ + Sbjct: 534 IL-------------MKEKLPKYLSTDPLS-IQVMSPQKKGLLGVENLNRFLQERLNPPG 579 Query: 467 K---IHRHPHSRWYEGRPVMIARNDSAL----------------GLFNGDIGIALDRGQG 507 K + + + G VM +ND L G+FNGDIG + Sbjct: 580 KNKPEYEGSGNIFRLGDKVMQIKNDYQLAWEIPGNFNLPIESGEGVFNGDIGKITEINAY 639 Query: 508 TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 + + L E +A+T+HKSQGSE+ L + +++R ++Y Sbjct: 640 QKTVTVFFEERKVVYSFQDLENLELAYAITIHKSQGSEYPAVLLPMYPGPKMLMSRNILY 699 Query: 568 TAVTRARRRLSLYADERILSAAIATRT--ERRSGLAALFSSR 607 TA+TRA+ + L ++ + +R SGLA + Sbjct: 700 TAITRAKSCVCLLGQPKVFLEMLHNEQELKRYSGLAQQLQTI 741 >UniRef50_B1C665 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C665_9FIRM Length = 737 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 136/635 (21%), Positives = 244/635 (38%), Gaps = 110/635 (17%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRL 58 L++ V + D Q A++V + + + + LS +G+ + L Sbjct: 177 TNPYALIDDVYGIGFKRAD-QIAMSVGIEMESPYRIISGIKYTLSSCYRDGNTYILKDEL 235 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 E A + + + L S + ++ +R +L ++ E Sbjct: 236 EEKVAKILGVNKDIISHNLANLF---LDDSVILEVTEDE-------ERCFLKELYECEIE 285 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGG 172 A+ + E D + DKL +EIN QK A A+ ++S+I+ Sbjct: 286 SAKNLMGLISYNEKDSEEID--FDKLIKKYEEINEINLDKTQKEAVISAIKSKVSIIT-- 341 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 G T ++ A+I + + L APTG+AA R++ES Sbjct: 342 --GGPGTGKTTIINAIIYILGSIGEKYTLTAPTGRAAKRMSESTK--------------- 384 Query: 233 IPEDASTLHRLLGAQPGSQR-----LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 +A T+HRLL + + + N + D +++DE SM+D+ + + A+ Sbjct: 385 --SEAKTIHRLLEYEYTLEDDHFLSFGKNEDNTIDSDYIIIDEMSMVDISLFDAFLKAVK 442 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 + ++F+GD DQL SV AG VL D+ + Sbjct: 443 NKTSLLFVGDIDQLPSVGAGNVLSDLISSEIFP--------------------------- 475 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 + L YR +S I A IN+G +K DF I + + I Sbjct: 476 ----VTKLDTIYRQDKESLIITNAHRINKGKMPILKKEA-DDFYFINTITQEKIKRNILN 530 Query: 408 LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK-- 465 + + P ++Q++ L++G GV+ LN+ ++ + Sbjct: 531 IV------------YNYKNTPLKRYDLLKDFQIISPLKKGLAGVSELNKSVQDILNPAHN 578 Query: 466 -RKIHRHPHSRWYEGRPVMIARNDSAL------------GLFNGDIGIALDRGQGTR-VW 511 + +H + + E VM +N+ + G+FNGD+GI + + + Sbjct: 579 TKNEIQHGSTTFRENDKVMQIKNNYQIKWTDINTLKKGEGVFNGDMGIIKKIDKEKQTLE 638 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 D ++ E ++A+TVHKSQGSEF + + S + + R L+YTAVT Sbjct: 639 IIFDDEKRVIYPKEQMEELNLSYAITVHKSQGSEFKAIIIPIFSGYSGFLNRNLLYTAVT 698 Query: 572 RARRRLSLYADERILSAAIA--TRTERRSGLAALF 604 RA+ + L + L + I + +R++ LA Sbjct: 699 RAKEMVILIGEVNGLKSMIKSVQKNKRKTTLAERL 733 >UniRef50_B0P921 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P921_9FIRM Length = 753 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 140/618 (22%), Positives = 232/618 (37%), Gaps = 103/618 (16%) Query: 16 LRPLDVQFAL-TVAGDEHPAVTLAAALLSHDA--GEGHVCLPLSRLENNEASHPLLATCV 72 D +A D + ++ + GH CLP +L A T Sbjct: 208 FELADAAAERSGLAPDSYERISAGLLHVLRHNVFHNGHTCLPEEKLLETAALLVETDTYH 267 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEV 132 + E L+A + R + LYL R + E + + + Sbjct: 268 VS-----DALEELIARGELVRLA-----VKDRSFLYLPRYYEAECCIVNRLSLMLSKGAA 317 Query: 133 DEALL-AQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 + A + L +L S Q++A A+T + +++ G T ++A+I Sbjct: 318 EHAPDMEEILGRLERESGIVYAELQRMAIVTAVTSPLMILT----GGPGTGKTTAISAII 373 Query: 190 QMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP- 248 ++ ++ LAAPTG+AA R++E G ++ T+HRLL Sbjct: 374 RLLGKMGEKVALAAPTGRAAKRMSELTGA-----------------ESKTIHRLLEVDFA 416 Query: 249 ---GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 G + + + NPL D +++DE SM+D + L+ AL R+I +GD DQL SV Sbjct: 417 DGSGLTKFKRNEKNPLPFDAVIIDETSMMDTLLFESLLRALKFSCRLILVGDPDQLPSVG 476 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 AG +LGD+ A + + L + +R + S Sbjct: 477 AGNILGDLIAGGHLP-------------------------------VVHLTEIFRQAAKS 505 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 I A A+ G+ + V DF + L A DL R Sbjct: 506 LIVTNAHAVVAGEYPRLD-VRDNDFFFLPDTLAAHACATAA-------------DLYARR 551 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPV 482 + Q++ R G G A LN ++ + +K + + EG V Sbjct: 552 LPKRYGFSPMWDIQVIAPTRVGAAGTAELNRVLQNAVNPPSPNKKEYVSGPVTFREGDKV 611 Query: 483 MIARNDSAL-----------GLFNGDIGIALDRGQGT-RVWFAMPDGNIKSVQPSRLPEH 530 M RN+ L G+FNGDIG+ + + + + + E Sbjct: 612 MQIRNNYDLVWQKDGGEDGMGVFNGDIGVIDLINRPSATIVVRFDEDRLAEYSFDMANEL 671 Query: 531 ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 E +A+TVHKSQG+E+D L L ++ + R L+YTA+TRA++ L + + + Sbjct: 672 ELAYAITVHKSQGNEYDAVILPLMEGKSRMYYRSLLYTAITRAKKLLIILGSASAVKTMV 731 Query: 591 AT--RTERRSGLAALFSS 606 R+ R + L L Sbjct: 732 DNHKRSRRYTNLRYLLDE 749 >UniRef50_D1T987 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1T987_9BURK Length = 696 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 235/670 (35%), Positives = 330/670 (49%), Gaps = 90/670 (13%) Query: 18 PLDVQFALTVAGDEHPA---------VTLAAALLSHDAGEGHVCLPLSRLENNEASHPLL 68 L FA + A S EGHVC+PL+ L + Sbjct: 33 ALAEGFARRIGMLARRGGASTEVVKWAARGAFAASRATAEGHVCVPLAALARRFDA---- 88 Query: 69 ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH 128 ++ L + A+ +I RLYL R + ER +A Sbjct: 89 SSAEVRAALLASGMASDGAADTAGAAALRPLVIDAQGRLYLARYYDYERRLAHALVAQAT 148 Query: 129 A--------IEVDEALLAQTLDKLF--PVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 A + A L + L + F P DE++WQ+VAA +AL+ R++++SGGPGTGKT Sbjct: 149 ADGSTANVDADTAPAALRERLLRYFGPPRDDEVDWQRVAAVMALSGRLTIVSGGPGTGKT 208 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 TTV +LA L+ RI LAAPTGKAA R+ E+L +LP E +R+P+ + Sbjct: 209 TTVVGVLACLLDA--RADLRIALAAPTGKAAQRMQEALLARAGELPA--ELAERLPQTSY 264 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 TLHRLLG+ PG R RHH NPL DV+V+DEASMID+ M + L+DA+ R++ LGD+ Sbjct: 265 TLHRLLGSGPGG-RFRHHRDNPLPYDVVVIDEASMIDVAMATHLLDAIGAQTRLVMLGDK 323 Query: 299 DQLASVEAGAVLGDI--------------------------------------------- 313 DQLA+VEAGAV ++ Sbjct: 324 DQLAAVEAGAVFAELSARPALSASGLRRVAQALDINEARLARALPRASRQGDEAPSDDFF 383 Query: 314 --------CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 +G + A + E L D + L+++YRFG +S Sbjct: 384 VPPEALQTFEADASGDLFAGVATAAGDEQPDRDARSANEHNPLADCVVWLERNYRFGLES 443 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED---YIAMLEEALAGYGRYLDLL 422 IG+L+ AI G +A V + D T++ L + AG+ Y D L Sbjct: 444 PIGRLSVAIRNGSPSAALDVLRTDPTEVCAAALHEDAHTTLTERTMTRLAAGFAPYADAL 503 Query: 423 QARA-----EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 A +P + A N +++LCA R GP GV +N I +++ + ++W+ Sbjct: 504 AATLASDTPDPLPLFDALNRFRILCATRLGPRGVDQVNAAIAAQVRRAAGVTLAVGAQWF 563 Query: 478 EGRPVMIARNDSALGLFNGDIGIAL-DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 GRPVM+ RND ALGLFNGDIGIAL G RV+F DG +++V P+ LP H+T +A+ Sbjct: 564 AGRPVMVTRNDYALGLFNGDIGIALPGAGGALRVYFRTGDGGVRAVSPAALPPHDTAFAL 623 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 TVHKSQGSEF+HA L+LPS + V++RELVYTA+TRAR R+ + +L+ AIAT T+R Sbjct: 624 TVHKSQGSEFEHAVLVLPSAFSRVLSRELVYTAITRARERVEVIGARAVLAQAIATPTQR 683 Query: 597 RSGLAALFSS 606 SGLAA + Sbjct: 684 DSGLAARIAE 693 >UniRef50_A8ZX97 Helicase, RecD/TraA family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX97_DESOH Length = 736 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 141/606 (23%), Positives = 230/606 (37%), Gaps = 74/606 (12%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAGE-GHVCLPLSRLENNEAS 64 L E + D + + D+ + G+V +S L ++ + Sbjct: 183 LAEDLPGPGFVIADTIALSSGARADDPRRIRACVRHTLDQNRTAGNVFAFVSHLVDHCGT 242 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 + E + ++ P P + +Y ++ E +A Sbjct: 243 QFHIDPADVETALFELARA---EELVITEMPGPDPDVAI---VYPADLYAAETGIAARLA 296 Query: 125 EVNH-AIEVDEALLAQTLDKLFP--VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 + D A Q +D++ Q L+ R+ V++ G T Sbjct: 297 AFASVPVTTDRADSDQIMDQVVRQLAIQPSVEQLAVIQNILSHRVVVVT----GGPGTGK 352 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 L+ A+ + +G ++ LAAPTG+AA RL E GK +A TLH Sbjct: 353 TTLIRAIAAVFEGAGKKVMLAAPTGRAAKRLCEVSGK-----------------EAVTLH 395 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 RLLG + N L DV+VVDEASM+D+P+ L+ A P A ++ +GD QL Sbjct: 396 RLLGIGFEETPFLKNQDNQLRADVIVVDEASMVDIPLFFALLSATPVTAGLVLVGDVYQL 455 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV G VL D+ A + + L + +R Sbjct: 456 PSVGPGNVLRDLIASGSLP-------------------------------VFELTQVFRQ 484 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 S I + A I R + + + + + ++ IA DL Sbjct: 485 AEQSAIVRNAHRIRRSEPPDLASAAAISPDTGFWFVEKETQEEIAAT---------IKDL 535 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 +R + N+ Q+L + +GP G LN ++Q + ++ + + G Sbjct: 536 CVSRLPRTFGLDPANDIQVLTPMHKGPLGTIALNHALQQALNPDGPGNKETLAGFRPGDK 595 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 VM RN+ +FNGDIG R+ DG I E +A+TVHKS Sbjct: 596 VMHLRNNYTKEVFNGDIGTVAAVDTRRRMIDVNYDGRIVEYDVVEADELTLAYAITVHKS 655 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSG 599 QGSE+ L + ++ ++ R L YTA+TRAR+ + L + ++ A+ T R S Sbjct: 656 QGSEYPAVVLPMTTRHYTMLERNLFYTAMTRARQLVVLVGTSKAVAVAMRKNTPKTRLSL 715 Query: 600 LAALFS 605 LAA + Sbjct: 716 LAARLN 721 >UniRef50_D0KVH2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVH2_HALNC Length = 714 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 231/682 (33%), Positives = 326/682 (47%), Gaps = 79/682 (11%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFA---LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 +L L E V +R +D A L A D LA L SH AG+GHVCL ++ Sbjct: 32 ELLDILDEWVAAGWMRSIDRAVAGLVLNHAADISAPALLALVLASHQAGQGHVCLDMNAC 91 Query: 59 ENNEASHPLLATCVSEIGELQN-----------------WEECLLASQAV---------- 91 + S + + ++Q W+ L + V Sbjct: 92 LIDAKSLLRIPSGDGRGNDIQAVPRFTPADLLQGVTLTGWQAALDSCPGVVLQRPESSIH 151 Query: 92 --------SRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDK 143 + P + G LYL R W E+ + + + LD Sbjct: 152 GSSILGAPTSEQSNPPFVREGGLLYLRRYWQQEQGIVAALRSRLTPDALPAEPIRHILDA 211 Query: 144 LFPVS-DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC---RI 199 LFP + + +WQK+A AVA+ RR S+I+GGPGTGKTTTV K L A RI Sbjct: 212 LFPSTIAQPDWQKIACAVAIRRRFSLITGGPGTGKTTTVVKFLLLEQMRALEAGLPPRRI 271 Query: 200 RLAAPTGKAAARLTESLGKALRQL-----PLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 RL APTGKAAARL +S+ + L + +K +P+ T+HRL+G +P Sbjct: 272 RLCAPTGKAAARLLQSILGQMDALLAPFDAAFPDLRKALPDTVETVHRLIGVRPNQIHPV 331 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + A NPL DV+VVDEASMI + +M++L+ +L + +++ LGD+DQLASVE GAVLG++ Sbjct: 332 YRAENPLPADVVVVDEASMIGVELMAKLLASLDETTQLVLLGDKDQLASVEPGAVLGELS 391 Query: 315 AYANA-GFTAERARQLSRLTGTHVPAGTGTEA----ASLRDSLCLLQKSYRFGSDSGIGQ 369 + +TAE L+ TG +P ++ A+L + L SYRF S S IG Sbjct: 392 SVIAPDAYTAETRNWLAATTGQTLPDSETNKSIVTDAALAQAAVQLHHSYRFDSASDIGA 451 Query: 370 LAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM-------LEEALAGYGRYLDLL 422 LA +N GD + T+ + + RL+ + + L LA L Sbjct: 452 LARCVNAGDASGALTLLRTNKEQASVRLVADAAGHQPLRRIVQESLAPWLAALNEPLSAE 511 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482 A I A N+ Q+LCALR GP+GV GLN IE +++ + WY GRP+ Sbjct: 512 NQDARASAIFAAHNKAQVLCALRHGPYGVTGLNRWIEDMLRRSGALAVTGD--WYIGRPI 569 Query: 483 MIARNDSALGLFNGDIGIALDRGQGTR-------------VWFAMPDGNIKSVQPSRLPE 529 M+ RND AL L NG+IGI L + I+ + P RL Sbjct: 570 MVTRNDPALRLANGEIGITLPYVNPESPQSPPSLRVAFVNEIIEKGESPIRWIAPGRLTA 629 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE-----R 584 ET +A+TVHK+QGSEFDH+ L+LP+ PV+TREL+YTA+TRAR R +L + Sbjct: 630 CETAFALTVHKAQGSEFDHSVLVLPAMPNPVLTRELIYTAITRARHRFTLVSAPTDTTFT 689 Query: 585 ILSAAIATRTERRSGLAALFSS 606 +L IA+R +R L A + Sbjct: 690 VLKQGIASRVQRSGQLGAKLAR 711 >UniRef50_D1PL62 Helicase, RecD/TraA family n=3 Tax=Ruminococcaceae RepID=D1PL62_9FIRM Length = 743 Score = 391 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 150/615 (24%), Positives = 231/615 (37%), Gaps = 101/615 (16%) Query: 16 LRPLDVQFALTVAGDEHPAV--TLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 +D A +L H+AG GH CLP ++L A L+ + Sbjct: 197 FSDVDKIAAALHVELGSRLRVTAGIVYVLRHNAGNGHTCLPRAKLLETTAKFLLVTSLDI 256 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVD 133 E +E L + + R + T + ++L + E +A E++ Sbjct: 257 E----NGLDELLQSGELQPRTFDDT------EYIFLPDLLSAEEDIAARLGELSTFPTEP 306 Query: 134 EALLAQTLDKLF--PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 L + L Q+ A +AL+ R+ V++ G T + A++ + Sbjct: 307 PKTLESDIHALEIVQGFPYAPLQREAIRMALSNRVMVLT----GGPGTGKTTTVNAILSL 362 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG--AQPG 249 +GE R+ L APTG+AA RL+E AST+HRLL G Sbjct: 363 YEGEYDRVALCAPTGRAAKRLSELTHHT-----------------ASTIHRLLEVDYTTG 405 Query: 250 SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV 309 + R H+ N L DV+++DE SM+D+ + L+ A H R+I +GD DQL SV G + Sbjct: 406 AVRFIHNEKNLLKYDVIILDEMSMVDVKLFQSLLAAARYHCRIIMVGDADQLPSVGPGNI 465 Query: 310 LGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQ 369 LG+I + L + +R S I Q Sbjct: 466 LGEILSAGVVP-------------------------------TVRLTEIFRQAQKSLIVQ 494 Query: 370 LAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPD 429 A I +G++ T Q DF +EK LA DL+ R Sbjct: 495 NAHRIVQGEQPQKGTA-QDDFFIMEKN--------------GLACQKLICDLVSERLPRA 539 Query: 430 LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH-----RHPHSRWYEGRPVMI 484 + Q+LC ++G G LN +++ + G VM Sbjct: 540 YGFDPIRDIQVLCPAKKGTTGSVELNRCLQEVLNPPSPRKPQLGGEKGSKILRLGDKVMQ 599 Query: 485 ARNDSAL-----------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETT 533 +ND + G +NGD+GI + +R M D +L E E Sbjct: 600 IKNDYDITFERSGAEAGVGAYNGDMGIITEVDVESRSVTVMMDDRKYVYSADQLGELEPA 659 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 +A+T+HKSQGSEF + + + R L+YT VTRAR+ L I+ + Sbjct: 660 YAVTIHKSQGSEFPAIIVPVADVPPRLRYRNLLYTGVTRARKLCILTGSHWIVEQMVRNV 719 Query: 594 TE--RRSGLAALFSS 606 + R S L L Sbjct: 720 RQNLRYSCLRYLLKE 734 >UniRef50_B0P898 Putative uncharacterized protein n=3 Tax=Bacteria RepID=B0P898_9FIRM Length = 757 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 135/610 (22%), Positives = 224/610 (36%), Gaps = 92/610 (15%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHD----AGEGHVCLPLSRLENNEASHP 66 + R +D GD H + + A+ + GH+ + LE + Sbjct: 199 ISGFGFRRVD-AIVQKSGGDLHDPMRIKGAVFCALDEGKSKRGHLYISSEELEKSALKLL 257 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF-NE 125 +I + + ++ D +YL R++ E AR Sbjct: 258 N-----EKIPVPELRLHQQEVRDMMQEMILNGAIVSVKDNIYLPRVFAQEDETARRIAQR 312 Query: 126 VNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 185 + + V+ K+ Q+ A A +SVI+G PGTGKTT + +L Sbjct: 313 LVTQMPVEHIAPVLEQVKVEMGLRLSAQQEAAVYAAFRHGLSVITGSPGTGKTTVLRTIL 372 Query: 186 AALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 ++ +I L APTG+A+ R++ES G EDA TLH LG Sbjct: 373 EVYRRLH--PDGKIALMAPTGRASRRMSESTG----------------FEDARTLHSGLG 414 Query: 246 AQPGSQRLRHHAG-NPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 + PL D+++VDE SM+D+ + + + + +AR++ +GD DQL SV Sbjct: 415 LTSEEDEGSRNRKSEPLSADLIIVDEFSMVDMWLAEKFFERMKANARIVLVGDPDQLPSV 474 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 AG V +I + +L + +R D Sbjct: 475 GAGNVFREIIETQIVP-------------------------------VTVLDQIFRQSKD 503 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 S I A IN G+ K + DF + SG+ E+ Y + Sbjct: 504 SLIAYNAKFINEGN---TKLFYGPDFVFV------SGDSQEDTAEKITERYCLEIQE--- 551 Query: 425 RAEPDLIIQAFNEYQLLCALR-EGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGR 480 Q+L R EG LNE I + + + + + Sbjct: 552 --------SGIENVQILSPFRSEGAASSEQLNETIRELVNPFRSAEEEIKFGPRIFRVND 603 Query: 481 PVMIARNDSALGLFNGDIGI---ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 +M +N + NGD+G D QG ++ G L + +A T Sbjct: 604 RIMQTKNTEK--VSNGDLGFIRYIKDTDQGKKIGMDFGAGRTLEYGVDDLSNVDLAYATT 661 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--E 595 +HK+ GSE++ + L T ++ R L+YT +TRA++R+ L +++L AI + Sbjct: 662 IHKAMGSEYETVIMPLLKAHTIMMYRNLLYTGITRAKKRVVLIGQKQVLFMAIHRNEIGK 721 Query: 596 RRSGLAALFS 605 R + L Sbjct: 722 RNTLLGMRIQ 731 >UniRef50_Q039P4 ATP-dependent DNA helicase, RecD/TraA family n=9 Tax=Lactobacillus RepID=Q039P4_LACC3 Length = 822 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 147/632 (23%), Positives = 232/632 (36%), Gaps = 108/632 (17%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAG----EGHVCLPLSRLE 59 QL+ ++ D Q A +A + L A++ EG + L L Sbjct: 188 PYQLINDIDGIGFTRAD-QIAAKLAIAPTSQLRLGGAVMDTLQRLTDGEGDTYVTLKSLV 246 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 A V+ + QA+ + +I GDR++ R++ E + Sbjct: 247 TQTLDLLERARNVAVSPD--------AVGQAIVTLAKDNALIAEGDRIFPKRLFDAEWQI 298 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGGP 173 R + A ++K + Q+ A AL I +++GGP Sbjct: 299 GRQLKGLAEADATATEPELAEIEKTLAAVEADTGIAYDATQRKAIVTALQSPIFLLTGGP 358 Query: 174 ---------GTGKTTTVAKLLAA-LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 G +T L+ L Q E I LAAPTG+AA R++E+ Sbjct: 359 GTGKTTVTDGIVRTYARLHDLSLDLDQYTTDEPFPIMLAAPTGRAAKRISETT------- 411 Query: 224 PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283 AST+HRLLG +Q A N L +L++DE SM+D + L+ Sbjct: 412 ----------QLPASTIHRLLGLGVDTQEF---APNELPNGLLIIDEMSMVDTYLFRTLL 458 Query: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGT 343 AL +++ +GD+DQL SV G V D+ TA Sbjct: 459 TALHPGMKIVLVGDKDQLPSVGPGQVFADLLRSGVLPQTA-------------------- 498 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGED 403 L +R +DS I LA A+N G T Q D + + Q E Sbjct: 499 -----------LTHIHRQDADSSIIPLAHAVNAGKLPDDFTKPQVDRSFLACAPSQVPEV 547 Query: 404 YIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ 463 +++ A + + Q+L + G G+ LN ++ + Sbjct: 548 VGQVVQRAAVKQF-----------------SIADIQVLAPMYRGTAGIDRLNPLLQNILN 590 Query: 464 QKR----KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV------WFA 513 KR K + + + G V+ ND +FNG+IG + G Sbjct: 591 PKRSARTKAIQFGETEYRIGDKVLQLVNDPNQNVFNGEIGQIVGITLGKEAESKTDELTI 650 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 DGN + + S + +A ++HK+QGSEF L L Q ++ R L+YTA+TRA Sbjct: 651 DFDGNEITCKRSDFNKITLAYATSIHKAQGSEFPMVILPLTLQSRRMLRRNLLYTAITRA 710 Query: 574 RRRLSLYADERILSAAIAT-RTERRSGLAALF 604 + L L + A++ R +GL Sbjct: 711 KSFLILVGELAAFQEAVSEVAVNRHTGLVDRL 742 >UniRef50_A5ZS54 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZS54_9FIRM Length = 2375 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 134/612 (21%), Positives = 216/612 (35%), Gaps = 93/612 (15%) Query: 11 VEHKQLRPLDVQFA----LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHP 66 V +D Q A A D ++S GEGH+ L + Sbjct: 1831 VHGFGFLTVD-QIAVKAKHFRADDPLRIKAAILHIMSEAEGEGHLYLKREDIIERVEKLL 1889 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 VS + E + ++ Y + + E A + Sbjct: 1890 NHNKDVSPVSERA------IRDTGNDMIHTDGSLVCHDGGFYTRKSFQAELGAAAALVRL 1943 Query: 127 NHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 + + + L K+ D Q+VA IS+I+GGPG GKTT + + Sbjct: 1944 HMQ-TGMAVNVDRILRKIQKEQDIILNAKQQVAVKNVFENPISIITGGPGRGKTTVIRFI 2002 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 +A Q A + I L APTG A R+ E A T+H+ + Sbjct: 2003 IAV--QEALDKNAVILLCAPTGIARRRMRECT-----------------EYPALTIHKSI 2043 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 G + P+ D+++ DE SM+D+ + +L ++ AR++ +GD+DQ+ SV Sbjct: 2044 GLTGEAGEEEWKNEQPIPDDLIIADEFSMVDMYLADKLFSSIKSGARLVLVGDKDQIESV 2103 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 G V +I + +L + +R + Sbjct: 2104 GPGKVFQEIIDSGVFP-------------------------------VTVLDECFRQEGN 2132 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 S I Q A IN+ + VF F I + I + ++LQ Sbjct: 2133 STISQNAIKINK---NQLDLVFDDTFQFIPASTPEEASRKIQKIYRK--------EVLQR 2181 Query: 425 RAEPDLIIQAFNEYQLLCALRE-GPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEGR 480 E Q++ LR+ G LN + KR + + + EG Sbjct: 2182 NGS-------LEEVQVMSPLRKDTEAGTDALNLVLRDIANPKRFGYPEITNGRNTYREGD 2234 Query: 481 PVMIARNDSALGLFNGDIGIALDR---GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMT 537 VM +N+ + NGDIG + Q + DG + Q +A+T Sbjct: 2235 RVMQTKNNDE--VANGDIGEVIGIFRKDQKMVMRVDFGDGRVMEYQEEDYWPLTLAYAIT 2292 Query: 538 VHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TE 595 VHK+QGSE+ A L + ++ R + YTAVTRAR R + +R ++ AI T + Sbjct: 2293 VHKAQGSEYPMAILPMLPCFRWMLRRNIFYTAVTRARERFIIVGSKRAIAQAIRTDYISR 2352 Query: 596 RRSGLAALFSSR 607 R + Sbjct: 2353 RNTMFGYRIRKI 2364 >UniRef50_B2JKV2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Burkholderia RepID=B2JKV2_BURP8 Length = 672 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 236/651 (36%), Positives = 324/651 (49%), Gaps = 78/651 (11%) Query: 17 RPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIG 76 R + + D AA S EGHVC L L + Sbjct: 32 RVSALALRGGASEDAVRWAARAAFSASRATSEGHVCTSLDELAQRYEA------------ 79 Query: 77 ELQNWEECLLASQAVSRGDEPT----PMILCG-DRLYLNRMWCNERTVARFFNEVNH--- 128 E+ + LLAS S G +P P+++ G RLYL R + ER +A+ + Sbjct: 80 EVAHVRCALLASGVASDGMQPAYALRPLVVDGQGRLYLARYYDYERRLAQSLVDHARVEH 139 Query: 129 ----AIEVDEALLAQTLDKLF--PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + E+ L + L + F P ++I+WQ+VAA +AL+ R++++SGGPGTGKTTTV Sbjct: 140 EDGVSGEMSPHALRERLLRYFGPPQDEQIDWQRVAAVMALSGRLTIVSGGPGTGKTTTVV 199 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 +LA L+ R+ LAAPTGKAA R+ E+L LP E R+P + TLHR Sbjct: 200 GVLACLLDA--RPALRVALAAPTGKAAQRMQEALLARAGSLP--PELAARLPHTSFTLHR 255 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG P R RHH NPL DV+V+DEASMID+ M + L DAL ++ LGD+DQLA Sbjct: 256 LLGTGPDG-RFRHHRENPLPYDVIVIDEASMIDVAMATHLFDALARDTHLVMLGDKDQLA 314 Query: 303 SVEAGAVLGDI----------------------------------CAYANAGFTAERARQ 328 +VEAGAV G++ C A + Sbjct: 315 AVEAGAVFGELSAQPAFTAQGVGSIAAALGIGERSLRDALPATAICHDARSDQAEPLFDD 374 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 L ++ A L D + L+++YRFG +S IG+L+ AI RG V Sbjct: 375 LFAMSSGAPSEAKPARLAPLADCVVWLERNYRFGLESAIGRLSLAIRRGAAQEALDVMDI 434 Query: 389 DF------TDIEKRLLQSGEDYIAMLEEALAGYGRYLDL------LQARAEPDLIIQAFN 436 D E E I L A Y L A + + A N Sbjct: 435 DPAVPCAAAFHEDMDAAPSEHTIHRLAAGFAAYADALTAALFSTSANAASHAPALFDALN 494 Query: 437 EYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNG 496 +++LCA R G GV +N + +++ ++ ++W+ GRP+M+ RND ALGLFNG Sbjct: 495 RFRILCATRLGARGVDHMNAAMAAQVRRAARMPLAIGAQWFAGRPIMVTRNDYALGLFNG 554 Query: 497 DIGIAL-DRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS 555 DIGIAL RV+F DG +++V P+ LP H+T +A+TVHKSQGSEFDHA L+LPS Sbjct: 555 DIGIALPGADGALRVFFRGADGALRAVSPAALPPHDTAFALTVHKSQGSEFDHAVLMLPS 614 Query: 556 QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 + V++RELVYTAVTRAR R+ + +L AIAT T+R SGLAA + Sbjct: 615 TFSRVLSRELVYTAVTRARERVEVVGSRAVLMRAIATPTQRDSGLAARIAE 665 >UniRef50_Q3AB49 Helicase, RecD/TraA family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB49_CARHZ Length = 745 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 135/624 (21%), Positives = 240/624 (38%), Gaps = 111/624 (17%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDEHPAVTL---AAALLSHDAGEGHVCLPLSRLENNEAS 64 + + P D A + + +L +GHV LPL+ + N + Sbjct: 192 IHELYGFAFAPFDK-LAKDWHFPPNHLYRIKASIVYVLKEALEQGHVYLPLAEVYNKGLA 250 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 E + +E L + R E + L DRLYL +++ E+TVAR Sbjct: 251 LL------GEGIGPETLDEGL---SVLLRTGE---VCLERDRLYLKKLYDAEKTVARKVA 298 Query: 125 EVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + + ++ ++K +S QK A ++ + K + Sbjct: 299 FLLTITDKKINIKKPLNEVEKKLGIS-YDPLQKEALSLMFAEK-----------KLFILT 346 Query: 183 K--------LLAALIQMADG--ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 ++ I++ + +I LAAPTG+AA RL+ES G Sbjct: 347 GGPGTGKTTVIKGFIELYQRFFPKNKIALAAPTGRAAKRLSESTGM-------------- 392 Query: 233 IPEDASTLHRLLG----AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 A+T+HRLL + G R++ PL D++++DE SM+DLP+ + L +A+ Sbjct: 393 ---PAATIHRLLEPEGETRSGELLFRYNKYEPLPYDLIIIDEVSMLDLPLAAALFEAITP 449 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 R++ +GD +QL V G +L D+ A Sbjct: 450 ECRLVLVGDPNQLPPVGPGQLLKDLLAVEEIPR--------------------------- 482 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 L+ +R G D+GI ++A + GD + ++ + + + ED + Sbjct: 483 ----ISLKTVFRQGEDAGIIEVAHRVLTGDWSELERLLGR----------RILEDVFFLP 528 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ-KRK 467 + L + + + + +L +R+G GV LN +++ + + Sbjct: 529 AKDTENITNLLLKVVKKLWENYGYSP-EDIAVLSPMRKGALGVENLNVLLQKLFNGFETQ 587 Query: 468 IHRHPHSRWYEGRPVMIARNDSAL---GLFNGDIGIALDRGQ--GTRVWFAMPDGNIKSV 522 + + + VM +N+ G+FNG+ G + DG Sbjct: 588 EVKFFGTSFKVNDKVMQIKNNYERGEDGVFNGETGFIKKIIKSGDEEEIIVSFDGKNIKY 647 Query: 523 QPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD 582 + + L E ++A TVHK+QG E+ L+L + P++ R L+YTAVTRA++ L + Sbjct: 648 RKTDLEELTLSYATTVHKAQGMEYPVVILVLHNYHYPLLKRNLLYTAVTRAKKMLIVIGT 707 Query: 583 ERILSAAIAT--RTERRSGLAALF 604 L A+ R S L Sbjct: 708 PWALRQAVENIKEETRYSSLPERL 731 >UniRef50_A5N3G4 Predicted exodeoxyribonuclease n=26 Tax=Clostridium RepID=A5N3G4_CLOK5 Length = 750 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 136/637 (21%), Positives = 239/637 (37%), Gaps = 108/637 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAA---ALLSHDAGEGHVCLPLSRL 58 + L E + + D A + ++ + + L++ G+ +P+ L Sbjct: 176 ENPYILTEEISGIGFKIADK-IARGLGIEKDSPFRVQSGIKYLINKFCSRGNTYVPIDVL 234 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 N S ++ + E +E L V + + ++ + E + Sbjct: 235 IRNGMSILGVSQ---KELEKNIYESSLNGKIKVEKYGDKI-------CVFSMTYYYCELS 284 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEIN---WQKVAAAVALTRRISVISGGPGT 175 V + + D L K F ++ I QK A ++ + +I+ Sbjct: 285 VTKKILTLAFNKCKDIDLNIYEEIKNFEKANNIKFAFSQKEAIKGSVENSVEIIT----G 340 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T ++ +IQ+ + ++ +AAPTG+AA R++E+ + Sbjct: 341 GPGTGKTTIINCMIQLFEKSNLKVLMAAPTGRAAKRMSEATKR----------------- 383 Query: 236 DASTLHRLLGAQPGSQ----RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 +A T+HRLL S +PL DV+++DEASMID+ MM+ L+ A+ R Sbjct: 384 EAKTIHRLLEIGVESDDEALFFSRGEESPLQCDVVIIDEASMIDIVMMNNLLKAISLKTR 443 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDS 351 +I +GD +QL SV G VL D+ Sbjct: 444 LIIVGDSEQLPSVGPGNVLRDLIDS-------------------------------RCIK 472 Query: 352 LCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEA 411 + L++ +R +S I A IN G+ + +DF I+ + + + Sbjct: 473 VVRLKEIFRQSRESMIIVNAHKINLGEMPILNKKL-KDFYFIKALEFSNILNLL------ 525 Query: 412 LAGYGRYLDLLQARAEPDLII-QAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RK 467 ++L R Q+L +R+G GV+ LN ++++ + K +K Sbjct: 526 -------VELANKRLPAFNGHWDKMKHIQILSPMRKGILGVSNLNRKLQEALNPKSNNKK 578 Query: 468 IHRHPHSRWYEGRPVMIARNDSAL--------------GLFNGDIGIALDRGQGT-RVWF 512 + G VM +N+ L G+FNGD G D + V Sbjct: 579 EKYFRDMIFRVGDKVMQIKNNYTLKWTVISGEKEEKGMGIFNGDFGYIEDIDEEKDTVTV 638 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 + L E + + +T+HKSQGSEF + + ++ R L+YTA+TR Sbjct: 639 IFDEEKRVVYDSICLDELDLAYGITIHKSQGSEFPVIIVPMFMGPVLLMNRNLLYTAITR 698 Query: 573 ARRRLSLYADERILSAAIATRT--ERRSGLAALFSSR 607 A+ + L D R L+ I+ ER S L Sbjct: 699 AKEMVVLVGDLRALTFMISNNKSFERYSLLKYRIMDI 735 >UniRef50_A7VSJ6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VSJ6_9CLOT Length = 738 Score = 387 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 133/616 (21%), Positives = 229/616 (37%), Gaps = 103/616 (16%) Query: 14 KQLRPLDVQFALTVAGDEHPA---VTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLAT 70 +D A ++ + +L H+ GH CLP RL AS+ + Sbjct: 193 IDFERVD-AIAASLERPHDERGRIRAGISYVLLHNMNNGHTCLPKDRLLPAAASYLEIEE 251 Query: 71 CVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAI 130 +++ + ++ L +I + ++ +M E +A + + Sbjct: 252 ELADEILYEMIQDLTL----------ELDLINGREFIFTPKMHQCEIYIAARMLMMLNFP 301 Query: 131 EVDEALLAQTLDKLFPVS--DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + + + + S QK A AL++ + +++ G T L + Sbjct: 302 AQSITGVEEAVAAIEAQSGIQYAQQQKQAITEALSKGMLILT----GGPGTGKTTTLNGI 357 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 + + + R+ LAAPTG+AA R++E + +A T+HRLL + Sbjct: 358 LNILEQNGERVYLAAPTGRAAQRMSEVTRR-----------------EAKTIHRLLEVEW 400 Query: 249 GSQR---LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 Q + N L D L++DE SM+D + ++ ALP R+I +GD DQL SV Sbjct: 401 DPQDRPVFTRNEKNMLDCDTLILDELSMVDNALFEGVLRALPLGCRLILVGDTDQLPSVG 460 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 G VLGD+ A + L + +R S Sbjct: 461 PGNVLGDLIASGLLP-------------------------------VVQLTEIFRQSMQS 489 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 I A I +G + DF + + S D I +DL R Sbjct: 490 LIVTNAHQIVQGQMPELGRKDG-DFFFLPNQDPVSIRDTI-------------VDLCLRR 535 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK----RKIHRHPHSRWYEGRP 481 + Q+L R+G G LN+ ++ + +K EG Sbjct: 536 LPASYGYSPVFDIQVLSPGRKGELGTIALNQSLQSAVNPPEKGIKKAITVNGVLLREGDK 595 Query: 482 VMIARNDSAL-----------GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEH 530 VM +N+ + G++NGD+GI L+ + D + + + + Sbjct: 596 VMQVKNNYNIPWEKDDGTLGEGVYNGDVGILLEVDRTGSAAVRYDD-KVAAYDLESIGDL 654 Query: 531 ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI 590 E +A+TVHKSQGSEF+ + + + R L+YT VTRA+ L + + + + Sbjct: 655 ELAYAVTVHKSQGSEFEAVVMPMYPGPRQLYYRNLLYTGVTRAKNLLVMVGTPKTVERMV 714 Query: 591 ATR--TERRSGLAALF 604 T+R +GL Sbjct: 715 ENNRKTKRYTGLCYFL 730 >UniRef50_B0TIF8 Exodeoxyribonuclease V, alpha chain, RecD n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TIF8_HELMI Length = 717 Score = 387 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 155/603 (25%), Positives = 235/603 (38%), Gaps = 91/603 (15%) Query: 16 LRPLDV--QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 D + L EGHV LP S L + + Sbjct: 158 FDQCDRIAHRLGFRGDEPKRLQAALVYCLYLARDEGHVYLPASELLAQTGNILARSELYP 217 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH---AI 130 E E +N E V+ E + L GD YL ++ ER VAR ++ Sbjct: 218 EAPEEKNLHEQ------VAEAAEAQVIRLFGDGCYLPELYRAERVVARVLRRLSEEGEPW 271 Query: 131 EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ 190 VD + T+++ F + QK A ++VI+GGPGTGKTT + L+A + + Sbjct: 272 PVDVESVIATMEEDFGIR-YAERQKAAFFGVANHGLTVITGGPGTGKTTIIRGLIALVNR 330 Query: 191 MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGS 250 I L APTG+AA RL E+ G + A T+H+ LG + G Sbjct: 331 A--RPNADIVLCAPTGRAAKRLAETTG-----------------QPAFTVHKALGLRGGK 371 Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 PL DV++VDE SM+D+P+M+ L+ AL AR++ +GDRDQL SV G VL Sbjct: 372 TDPFWDVE-PLEADVVIVDEVSMVDIPLMAGLLRALKKGARLVLVGDRDQLPSVGPGQVL 430 Query: 311 GDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 DI + ++ L +R S I Sbjct: 431 RDIIEHDV-------------------------------GAILRLNHIFRQAETSAIVTE 459 Query: 371 AAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL 430 + I G + ++DF + + S E A+L+ R Sbjct: 460 SHRIRSGILPDLS--GRKDFLFLRR--NSSAEILDALLQTVNRAIKR------------- 502 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARN 487 + Q+L +R GV LN+ +++ + ++ + + G VM +N Sbjct: 503 AGYGLADVQVLSPMRFTEVGVWNLNKLLQEQLNPMNTGKREVKAGDHVFRTGDKVMQLKN 562 Query: 488 DSALGLFNGDIGIALDR------GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 + +FNGD+G D D + S S + +A TVHK+ Sbjct: 563 NYEKDVFNGDLGFIEDILLSGEEETDEDTIVVRFDEGLVSYGRSEWDQLMLAYATTVHKA 622 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSG 599 QGSE+ + + Q ++ R LVYTAVTRAR + L L+ A+ + R SG Sbjct: 623 QGSEYPVVVMPMTLQHRRMLRRNLVYTAVTRAREKAILIGMADALAFAVTNEQDAFRYSG 682 Query: 600 LAA 602 L+ Sbjct: 683 LSQ 685 >UniRef50_Q04B55 ATP-dependent DNA helicase, RecD/TraA family n=27 Tax=Lactobacillus RepID=Q04B55_LACDB Length = 796 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 145/616 (23%), Positives = 239/616 (38%), Gaps = 106/616 (17%) Query: 16 LRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 + D + F + + E ++ A LL EG L L L Sbjct: 196 FKQADHLGIGFGIALDSLERADGSILAVLLQALTMEGETYLELEELLPAAKELTN----- 250 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEV 132 ++AV+ + +++ R L + E + ++ + Sbjct: 251 ---------INFDRLAEAVNDLQDKKKVVVEEGRASLLAPFQVESEIVTDLEDLLAKGK- 300 Query: 133 DEALLAQTLDKLFPVSD------EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLA 186 + + LD+ ++ QK A A+T +S+++GGPG+GKTT + +L Sbjct: 301 EADYREKDLDQAIKRAERKLGISYDPEQKQAIKNAVTSPVSILTGGPGSGKTTIIDGILL 360 Query: 187 ALIQMADGERCRIRLAA----PTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 L +AD + A PTG+AA R+ E G A T+HR Sbjct: 361 VLKDLADMDEEEAEEAILLAAPTGRAAKRMEEVTG-----------------YPAKTIHR 403 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG G N L ++L+VDE SM+D+ + +L+ A+ + ++F+GD+DQL Sbjct: 404 LLGL--GIDNSEEMELNDLEGEILIVDEMSMVDIYLFEKLLSAISNVHHLVFVGDKDQLP 461 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SV AG V D+ C LQ +R Sbjct: 462 SVGAGKVFADLIEADFIP-------------------------------TCQLQVVHRQK 490 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 DS I LA A+N G AV ++ I R + + AL Sbjct: 491 DDSTIIPLAHAVNEGANPAVLLQKTASYSFIPCRPHAVPSAVEQITQAAL---------- 540 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR---KIHRHPHSRWYEG 479 A ++ Q+L A+ G G+ LN+ +++ + ++ K + Sbjct: 541 -------KSGFAADDIQVLGAMYRGDGGINSLNDTLQRVINPEKGNDKAVEAHGENFRLH 593 Query: 480 RPVMIARNDSALGLFNGDIGIAL-------DRGQGTRVWFAMPDGNIKSVQPSRLPEHET 532 V+ +ND G++NG+IG + + DGN + + L Sbjct: 594 DRVLQLQNDPERGIYNGEIGKVVAVDPEMLEDEDDEVKLLVNFDGNEVAYTQADLNNLTR 653 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA- 591 +A+T+HKSQGSEF L L Q ++ R L+YTA+TRA ++L + +E+ + A+ Sbjct: 654 AYAITIHKSQGSEFPLVILCLTMQNYIMLKRNLLYTAITRASQKLVMVGEEQAFAQAMRV 713 Query: 592 TRTERRSGLAALFSSR 607 ERR+ L L R Sbjct: 714 KGNERRTNLVWLLKDR 729 >UniRef50_UPI00016C0EC6 helicase, RecD/TraA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EC6 Length = 740 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 138/637 (21%), Positives = 246/637 (38%), Gaps = 105/637 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRL 58 + L +E D A + + +L+ +GH C L Sbjct: 175 ENPYALARDIEGVGFTKADE-LAKKIGVEREHWGRIKAGILFVLNAIKSDGHTCCSKVFL 233 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 E + +I + N E L + + + +++C LY +R Sbjct: 234 EQEVMRLLDV-----DIELVNNAMEMLNLERKLVIKVYDSEVMVCNIALYYKEQEIAKRL 288 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 + E D ++ + D + Q+ A ++ + ++VI+ G Sbjct: 289 MTLASAEKKLNANFDVRKEMAQTERELKI-DLVKEQREAIINSMVKGVTVIT----GGPG 343 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T ++ ALI M + LAAPTG+AA R+ + + Sbjct: 344 TGKTTIIKALIHMVAKLDETVLLAAPTGRAAKRMEIAT-----------------QAETK 386 Query: 239 TLHRLLGA------QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 T+HRLL SQ + NPL DVL+VDE SM+D+ +M ++ AL + R+ Sbjct: 387 TIHRLLEIAFNKDKSFESQFFCRNEDNPLETDVLIVDEISMVDIYLMDSILKALRCNQRL 446 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV AG +L DI + Sbjct: 447 VLIGDTDQLPSVGAGNILRDIIKSGKI-------------------------------KV 475 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L++ +R +S I A IN G+ + + DF I+++ ++ + Sbjct: 476 IRLEQVFRQAKESAIIINAHKINHGE-EIIANKEKSDFFIIDEKTQNDVKNTL------- 527 Query: 413 AGYGRYLDLLQARAEPDL-IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKI 468 +DL+ R + + Q+L +R+G GV LN ++ + ++ Sbjct: 528 ------VDLMTKRLPAKYEDLDVMKDVQILVPMRKGLLGVHELNGVMQNALNLKSDDKEE 581 Query: 469 HRHPHSRWYEGRPVMIARNDSAL----------------GLFNGDIGIALDRGQGTRVWF 512 + + ++ + G VM +N+ L G++NGD+G+ + + +V Sbjct: 582 YEYRNTLYRVGDKVMQTKNNYNLIWKVPAGSGLVVDEGMGVYNGDMGVIKEIDKYEKVIT 641 Query: 513 AMPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 DG + + L E + ++ T+HKSQGSE+ L L S T +++R L+YTAVT Sbjct: 642 VEFDGKKRVDYEYANLGELDLSYVTTIHKSQGSEYPIVILPLFSGPTVLLSRNLLYTAVT 701 Query: 572 RARRRLSLYADERILSAAIATRT--ERRSGLAALFSS 606 RA++ + + + + I+ ER + L S Sbjct: 702 RAKKMVIIVGNRETIRKMISNNKEVERDTSLLHHLRS 738 >UniRef50_Q1WTZ7 Exodeoxyribonuclease V alpha chain n=2 Tax=Lactobacillus salivarius RepID=Q1WTZ7_LACS1 Length = 824 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 138/641 (21%), Positives = 223/641 (34%), Gaps = 122/641 (19%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAA--ALLSHDAGEGHVCLPLSRLEN 60 +L ++ D + A D + A +L G+ + L+ L Sbjct: 197 PYRLSVDIDGISFTKADQIAQQFGFASDSPGRIRGAIFQSLYDLTYATGNTYVELNPLVT 256 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 + +E + Q + L+ + E + +++Y + E +A Sbjct: 257 ETLKLL--ESNRNEAIDPQLVADQLI------KLTEEDKIKSDDNKVYSRTFFNAEWNIA 308 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVS------DEINWQKVAAAVALTRRIS------- 167 + + D LDKL + D + QK A A+ + Sbjct: 309 ENLYRLLKSGNSDLPNNDALLDKLLIKAEDQLGIDYDSEQKRAIKDAIKSPVFLLTGGPG 368 Query: 168 -----VISGGPGTGKTTTVAKLLAALIQMA-------DGERCRIRLAAPTGKAAARLTES 215 +I+G + + A L + I LAAPTG+AA R+ ES Sbjct: 369 TGKTTIING---------IVAVYALLNDIDLDIGKYDKDNPFPILLAAPTGRAAKRMAES 419 Query: 216 LGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMID 275 G AST+HR+LG +L L +L+VDE SM+D Sbjct: 420 TG-----------------LPASTIHRMLGINAHDDKLPEDIQE-LEGALLIVDETSMVD 461 Query: 276 LPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGT 335 +M L++++P H +VIF+GDR+QL SV+ G V D+ Sbjct: 462 TLIMDLLLNSIPSHMQVIFVGDRNQLPSVQPGQVFSDLLVSDALPKK------------- 508 Query: 336 HVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEK 395 L K YR G S I LA +I G+ A T Q D I Sbjct: 509 ------------------ELTKIYRQGEGSSIINLAHSIKNGELPADFTKAQSDRAFIPC 550 Query: 396 RLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLN 455 Q +++ AL ++ Q+L + G G+ LN Sbjct: 551 EAGQLTSAVEQVVKAALNKGNSK-----------------DDIQVLAPMYRGNVGINRLN 593 Query: 456 ERIEQFMQQKRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-------G 505 +++ + + + G V+ ND +FNGDIG + Sbjct: 594 TILQELLNPANPRQKEVIFNEQVFRIGDRVLHLVNDPENNVFNGDIGKIVGINIPKTKKD 653 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 + A DGN + + M++HKSQGSEF L + Q + R L Sbjct: 654 KKGEQIIADFDGNEVTFDKKDWINLTLAYCMSIHKSQGSEFPIVVLAMLPQYQRMFARNL 713 Query: 566 VYTAVTRARRRLSLYADERILSAAIA-TRTERRSGLAALFS 605 +YT +TRA+++L L + + R++GL Sbjct: 714 LYTGITRAKQKLVLLGNVSSFRQSAEIISLNRKTGLLKRIR 754 >UniRef50_Q8EPS6 Conjugation transfer protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8EPS6_OCEIH Length = 776 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 134/626 (21%), Positives = 230/626 (36%), Gaps = 105/626 (16%) Query: 10 AVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA-LLSHDAGEGHVCLPLSRLENNEASHPL 67 +E R D + +AG + +L GHV +PL Sbjct: 203 DIEGFGFRTADQIATQQGIAGTHESRIGAGIIFVLQRAIQSGHVYVPLRDCLEEVVDLLR 262 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 +AT E + S + + +I+ +++YL ++ E A + Sbjct: 263 IATSDIE-----------IVSFVFKQLNTAKKIIIIDEKVYLPSLYYAEDGFAANLKRIL 311 Query: 128 HAIEVDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISGGPGTGKTTTVA 182 + +A+ L + + +E Q A A+ ++ +++GGPGTGKTT + Sbjct: 312 DKPMEENIPMAEMLKIIGSIEEEEVLSYGKEQFDAINHAIHSKLMILTGGPGTGKTTVIK 371 Query: 183 KLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 +L A + L APTG+AA R+TES G Sbjct: 372 GILKAYASLQKVSLDPKDYKNKSDFPFVLTAPTGRAAKRMTESTGI-------------- 417 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A T+HRLLG G L +L+VDE SM+D+ + + L A+P +V Sbjct: 418 ---PAVTIHRLLGWN-GIGSFEKDEHEQLEGKLLIVDEFSMVDIWLANHLFKAIPADMQV 473 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV G VL D+ Sbjct: 474 LLVGDEDQLPSVGPGQVLTDLMHSNLLP-------------------------------T 502 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 LQ+ YR S I QLA I + + +A +DF+ I R Q E +++++A Sbjct: 503 VSLQEVYRQKEGSKIIQLAHEIKQDNCSANSLSNDRDFSFISCREPQMIEVISSVMKKA- 561 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIH 469 N Q+L + G+ +N+ +++ + KR+ Sbjct: 562 ----------------KAKGIDLNNIQVLAPMYRSQAGINIINQELQKLINPPTEKRREI 605 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFAMPDGNIKSVQ 523 + + G V+ N G++NGDIG + + + Sbjct: 606 HYQDVIYRTGDRVIQLVNQPEDGVYNGDIGEIVAIFKPEENTEHEEQIVIAFEDREVVYI 665 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 + +++HKSQGSEF L + ++ + L+YTA+TR++ L + ++ Sbjct: 666 RKDYNNFTHAFCISIHKSQGSEFPIVLLPVVYAHHRMLRKNLLYTAITRSKESLIICGEQ 725 Query: 584 RILSAAIATR--TERRSGLAALFSSR 607 + T+ +R + L +R Sbjct: 726 PAFLKGVNTKDTNQRNTSLKDALVTR 751 >UniRef50_A9WGW5 Helicase, RecD/TraA family n=4 Tax=Chloroflexi (class) RepID=A9WGW5_CHLAA Length = 725 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 152/617 (24%), Positives = 234/617 (37%), Gaps = 90/617 (14%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENN 61 +L + V+ R D + L +A D+ + L+ + EGH LP L Sbjct: 180 PYRLADEVDGVGFRTADAIAAGLGIARDDPQRIAAGLRYTLAQASDEGHCYLPAGELTRR 239 Query: 62 EASHPLLATC-VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 AS + T V+++ L V+ D +YL + E VA Sbjct: 240 AASLLSVTTAAVTDVFTQMVATNQLWRDPIVADPDP------DRYPIYLPPLAFAEIGVA 293 Query: 121 RFFNEV-NHAIEVDEALLAQTLDKLFP------VSDEINWQKVAAAVALTRRISVISGGP 173 + + + +F + + Q+ A ALT + +++ Sbjct: 294 NAIRRLIQQRSSLAARYAPSRWNLVFAHLAERRGINLSDQQRRAVQTALTTPVMLLT--- 350 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 G T L AL+ + R LAAPTG+AA RL+E+ G Sbjct: 351 -GGPGTGKTTSLRALVMLLQARGYRPLLAAPTGRAARRLSEATG---------------- 393 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 +A T+HRLL P R +A PL D+LV+DEASM+D+ + ++L+ A+P A ++ Sbjct: 394 -LEARTIHRLLEYGPDG-TFRRNAEYPLDCDLLVIDEASMLDIVLANQLLKAIPAGAHLV 451 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD DQL SV G VLGD+ Sbjct: 452 IVGDADQLPSVGPGRVLGDVIESGVVPR-------------------------------V 480 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L +R + SGI A IN G DF + Sbjct: 481 HLDAIFRQAAGSGIAANARRINEGHLPEWGAH--DDFYFFAAATPERCAAL--------- 529 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHR 470 ++L+ R + Q+L +G GVA LN ++ + R + Sbjct: 530 ----TVELVVERIPRRFGFDPRRDIQVLSPTHKGVAGVAALNAALQAALNPPRPGVAEYH 585 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRLPE 529 + + G V+ RND ++NGD+G + G V DG L + Sbjct: 586 SGATIFRVGDRVIQQRNDYDRDVYNGDVGEIVAVDPTGPTVMVRFEDGRTIRYNGLDLDD 645 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 +A++VHKSQGSE+ L L P++ R L+YTAVTRAR+ + + D R + A Sbjct: 646 LTLAYALSVHKSQGSEYPVVVLPLLLSHQPLLQRNLIYTAVTRARQLVVIVGDRRAVEVA 705 Query: 590 I--ATRTERRSGLAALF 604 I A R +GL+ Sbjct: 706 IAAANVERRYTGLSIRL 722 >UniRef50_C6VR87 Exodeoxyribonuclease V, alpha chain n=44 Tax=Bacilli RepID=C6VR87_LACPJ Length = 849 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 157/632 (24%), Positives = 238/632 (37%), Gaps = 108/632 (17%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSRLENNE 62 L+E ++ + D Q A + D L AALL+ G L N Sbjct: 205 LVEDIKGVGFKKAD-QIAAQLKIDPQADDRLKAALLTEINELCVENGDTYTTAQPLLNQT 263 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 A V + LA Q V E ++ +R+YL ++ E VA Sbjct: 264 LQLLENARNV-------QIDPSKLADQLVVLAKENK-IVGDENRIYLRGLYEAEWRVAEH 315 Query: 123 FNEVNHAIEVDEALLAQTLDKLFPVSD------EINWQKVAAAVALTRRISVISGGPGTG 176 + A + DE L + +D Q A A+T + +++GGPGTG Sbjct: 316 LQRLL-AADNDEKLSERAVDHAIEHVGRASNITYDESQTEALKAAITAPVFLLTGGPGTG 374 Query: 177 KTTTVAKLLAALIQM---------ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 KTT + L+A ++ + I LAAPTG+AA R+ E+ G Sbjct: 375 KTTIIRGLVALYAELHDVALDINQYKDKPFPILLAAPTGRAAKRMAETTG---------- 424 Query: 228 EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 AST+HRLLG L +L++DE SM+D + +L+ A+P Sbjct: 425 -------LPASTIHRLLGLTGREDGPEE-PSKELDGGLLIIDEMSMVDTVLFQQLLTAIP 476 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 H +VI +GD+DQL SV AG V D+ ++ Sbjct: 477 SHMQVILVGDKDQLPSVGAGQVFHDLLQFSELPQ-------------------------- 510 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 L YR G+DS I LA AI G A V Q D + I Q Sbjct: 511 -----IELTTIYRQGNDSSIIPLAHAIKDGHLPADFAVNQPDRSFIACNAYQ-------- 557 Query: 408 LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK 467 ++ + ARA+ + E Q+L + G G+ LN +++ + Sbjct: 558 -------VNHIVEQVVARAKAKGF--SAEEVQILAPMYRGTAGIDQLNTTVQKIFNPLKS 608 Query: 468 IHRH----PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG--------QGTRVWFAMP 515 H+ + G V+ N +FNGDIG + Sbjct: 609 AHQKHLTYNGQDFRVGDKVLHLVNSPEDNVFNGDIGKIVGIDLANDSHNESKKDQITIAF 668 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 D N + Q + ++M++HKSQGS+F L L Q ++ R L+YTAVTRA + Sbjct: 669 DQNEVTYQRNEWNRLTLAYSMSIHKSQGSQFKMVILPLVPQFARMLQRNLLYTAVTRAEQ 728 Query: 576 RLSLYADERILSAAIATRT-ERRSGLAALFSS 606 L L D + ++ + R++ L Sbjct: 729 MLILLGDSQSFERSVTNESVNRQTTLTKRLQQ 760 >UniRef50_D2ELG1 RecD/TraA family helicase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELG1_PEDAC Length = 836 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 141/630 (22%), Positives = 237/630 (37%), Gaps = 105/630 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSR 57 + QL +E+ + +D + L + +L+ G + Sbjct: 208 ENPYQLANDIENIGFKRVD-AIGQQLNFPVDFPGRLQSGILATIQEWCNSTGDTYMVAEI 266 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 + +I E V + ++ ++YL ++ E Sbjct: 267 MLQRAQQLLGNEINAEKIAEQ------------VLELGKQGRVVGENGQIYLKWLYQAEE 314 Query: 118 TVARFFNEVNH-AIEVDEALLAQTLDKLFP--VSDEINWQKVAAAVALTRRISVISGGPG 174 + + +V+E + + + + + Q A +AL+ I++I+GGPG Sbjct: 315 AIGYQLQHLLKNPPKVNEKAVDRAIKRAEEHLALEYDETQNNAIRMALSHGITIITGGPG 374 Query: 175 TGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 TGKTT V L+ + ++ D + I+LAAPTG+AA RL+E G Sbjct: 375 TGKTTIVKGLINSFAELHDLDLDPNANPDQDYPIQLAAPTGRAAKRLSEVTG-------- 426 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 A T+HRLLG G+ L L ++LVVDE SM+D + + LI A Sbjct: 427 ---------VPAKTIHRLLGLN-GNDDLHDEQIQELRGELLVVDEMSMVDTGLFNTLISA 476 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 + +V+ +GD+DQL SV G V D+ Sbjct: 477 INAEMQVVLVGDKDQLPSVGPGQVFSDLIRSQKIP------------------------- 511 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L K YR DS I Q+A +I G+ T + D + I+ Q + Sbjct: 512 ------TISLTKIYRQEQDSSIIQMAHSIQNGEMPDDFTQNRPDKSFIKASAYQVVDAID 565 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ- 464 + E A+A N+ Q+L + G G+ +N +++ + Sbjct: 566 QIAERAVARGLSK-----------------NDLQVLAPMYRGAAGIDEINRHLQRVLNPP 608 Query: 465 ---KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-----GQGTRVWFAMPD 516 K H ++ G V+ N +FNGDIG G+G D Sbjct: 609 QTDHPKYLEANHQQFRIGDKVLQLVNAPENNIFNGDIGEITGIVTEKAGKGHAQLIVDYD 668 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 GN + + L + + +++HKSQGSEF L + Q ++ R L+YT +TRA Sbjct: 669 GNEVTYGKNDLNQLTLAYCVSIHKSQGSEFPVVILPMVRQYYRMLQRNLLYTGLTRASDS 728 Query: 577 LSLYADERILSAAIATRT-ERRSGLAALFS 605 + L + A+ + R++GL + Sbjct: 729 IILLGEVEAYQRAVQNESANRQTGLVKRLN 758 >UniRef50_Q8NW86 MW1569 protein n=68 Tax=Bacillales RepID=Q8NW86_STAAW Length = 825 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 132/634 (20%), Positives = 241/634 (38%), Gaps = 105/634 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLSR 57 + QL+ ++ D Q A + + L AALL +GH LP++ Sbjct: 190 RNPYQLIYDIKGIGFNKAD-QLARNIGIAYNDNERLKAALLYTLEEECIKQGHTYLPINV 248 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 + + +L E+ E + +E L +E +I+ +++ + ++ +E Sbjct: 249 VIDLTV--DVLNYQDEEVIEPEKLDEMLQ------YLNEEKRLIIDNEQVAIPSLYYSEI 300 Query: 118 TVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISG 171 + + + L ++ N QK A A+ ++ +++G Sbjct: 301 KSVQNLFRIKTHTNKLTEIEQSDLQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTG 360 Query: 172 GPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQ 222 GPGTGKTT + ++ ++ + + LAAPTG+A+ RL ES G Sbjct: 361 GPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLAAPTGRASKRLQESTG----- 415 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 +A T+HRL+G + + N ++ ++++DE SM+D + + Sbjct: 416 ------------LEAMTIHRLIGWNQDT-KPEDILENEINARLIIIDEMSMVDTWLFHQF 462 Query: 283 IDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTG 342 + A+P A++IF+GD DQL SV G V D+ Sbjct: 463 LSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPR--------------------- 501 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 L + YR S I +LA + G K + F D + I + Q Sbjct: 502 ----------VNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRF-HDRSFINCQANQIPT 550 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 ++ A+ + Q+L + +G G+ LN+ ++ + Sbjct: 551 VVEKVVTSAVNK-----------------GYTMADIQVLAPMYKGNAGIKRLNQVLQDIL 593 Query: 463 QQKR---KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFA 513 K+ + + +G V+ N +FNGDIG+ + V Sbjct: 594 NPKKKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLVV 653 Query: 514 MPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 +GN + + E + ++HKSQGSEF + + Q ++ R ++YT +TRA Sbjct: 654 DFEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRA 713 Query: 574 RRRLSLYADERILSAAIATRTE-RRSGLAALFSS 606 + L L D + T + R + L L + Sbjct: 714 KMSLVLLGDPEAFDIGLKTNGQARLTQLCTLLKN 747 >UniRef50_C7Q0I8 Helicase, RecD/TraA family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q0I8_CATAD Length = 740 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 158/621 (25%), Positives = 242/621 (38%), Gaps = 94/621 (15%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVA-GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 L+E V D + A VA D + L +G + + L + Sbjct: 187 PYLLIEKVRGIGFAIADKIALASGVAEQDPKRLRAALSDRLEAARRDGDCYMNRTHLLVD 246 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILC----GDRLYLNRMWCNER 117 A + I E L A +AV +P P + ++ + ER Sbjct: 247 AARLVGQDRELVRIE-----LEQLAADRAVILEPDPNPGLEDVGPPATVVFAKTLHNTER 301 Query: 118 TVARFFNEVNHA---IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 +A V HA + V A+TLD P D Q+ A +ALT +SV++GGPG Sbjct: 302 ALATAVTRVLHADSDVPVAARRRAETLDADHP--DLHEGQRAAVGMALTHTVSVLTGGPG 359 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 GK+ TV + Q+ R+ LAAPTGKAA RL E G Sbjct: 360 CGKSHTVKTI----AQIVKACGGRVTLAAPTGKAAKRLAELTGMR--------------- 400 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 A T+HRL+ P + +PL D++VVDEASM+D+ + +L +P ++ Sbjct: 401 --AMTVHRLVADLPDADPDALFEDSPLMADLIVVDEASMLDVFLGLKLARQVPPGTHLLL 458 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL S+ G+VL D+ + T Sbjct: 459 VGDVDQLPSIGPGSVLKDLLRVPDVART-------------------------------E 487 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L +R G S I A I G ++ E + +E+ Sbjct: 488 LTHVFRQGEGSSITTNAHLIRAGRMP----------------NPRTSEFWFDEVEDPAQV 531 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QKRKIHRH 471 R L++ R + ++ Q+L A R G G L R+++ + + H Sbjct: 532 AERILEIATGRIPASHGV-PPSDVQVLAATRRGATGTVELGRRLQERLNPADPDKAEHWA 590 Query: 472 PHSRWYEGRPVMIARNDSAL---GLFNGDIGIALDRGQGTR-VWFAMPDGNIKSVQPSRL 527 S + G VM RND G+FNG + D +R V DG+I L Sbjct: 591 GTSVFRIGDKVMPIRNDPNKGSAGIFNGTTAVVSDLDPQSRTVQLRTDDGDIAVYDFDEL 650 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTP-VVTRELVYTAVTRARRRLSLYADERIL 586 + +A++VH+SQGSE+ + L ++ P ++ R L+YT VTRA++ + L R L Sbjct: 651 DDLLHAYAISVHRSQGSEYPYVVAPLTTETGPLMLYRNLLYTLVTRAQKLVVLVGQRRAL 710 Query: 587 SAAIATRTE-RRSGLAALFSS 606 A+ R + LA + Sbjct: 711 EIAVHNAGRARNTALAQRLQA 731 >UniRef50_A8SRT9 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SRT9_9FIRM Length = 797 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 145/688 (21%), Positives = 240/688 (34%), Gaps = 154/688 (22%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 ++ E + + D + L + D V A LS GH+ LP L Sbjct: 175 TNPYKIAEDITGIGFKTADEIADRLGIGKDSDFRVRAAIMYALSGANRLGHMYLPQKMLV 234 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGD------------------------ 95 + + + +L + Sbjct: 235 DKTYDLLMNEYMPYDPELEMTICNQILELSVAGKIIVKELGLNGESRDVGSESEKAGIEG 294 Query: 96 ---------------------EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDE 134 + P + +Y + E A + A+++D Sbjct: 295 SESMFDDGFDSVFDTQAEVQIDAPPETHTENIVYRVGDYYTELNSA----RMLTALDIDF 350 Query: 135 ALLAQTLDKLFPVSD------EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + +DK+ + + Q+ A A+ ++VI+ G T ++ L Sbjct: 351 SKAKLNIDKVIKTVEDEEKIQLADAQRQAVEKAVGHGVAVIT----GGPGTGKTTIINVL 406 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 I++ + R I LAAPTG+AA R+TE+ G A A T+HRLL Sbjct: 407 IRIYESLRMNIVLAAPTGRAAKRITEATGYA-----------------AQTIHRLLELNG 449 Query: 249 GSQR-------LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 G + NPL DV+++DE SM+D + L+ A+ R++ +GD +QL Sbjct: 450 GVDDDGDSVYVFARNESNPLEADVIIIDEMSMVDSGIFYSLLKAVTPGTRLVLVGDSNQL 509 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV G VL DI A + +L + YR Sbjct: 510 PSVGPGNVLKDIIASGV-------------------------------FHVSVLDRIYRQ 538 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 G DS I A IN G +K +DF I + + +L Sbjct: 539 GKDSDIIGNAHKINAGVHIEIKNK-SEDFFFIPRNGYNEIISELKVL------------- 584 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHRHPHSRWYE 478 + P ++ Q+L +R+ G+ LN ++++ + K + + + Sbjct: 585 -MTKQLPSFFKVNSSDIQVLTPMRKFDLGIENLNRQLQEILNPSGKGKPEYVRGDVVFRQ 643 Query: 479 GRPVMIARNDSAL-----------------GLFNGDIGIALDRGQ-GTRVWFAMPDGNIK 520 G VM +N+ G+FNGDIG ++ DG Sbjct: 644 GDKVMQVKNNYKQEWKIMDPTGRFAKEEGVGVFNGDIGFVRTVDDYDQKIIVEFDDGRQS 703 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 ++L E E +A+T+HKSQGSE+ L L ++ R L+YTAVTRARR + + Sbjct: 704 EYPYNQLEELEHAFAITIHKSQGSEYPVVVLPLLRCPPKLLNRNLLYTAVTRARRCVVIV 763 Query: 581 ADERILSAAIAT--RTERRSGLAALFSS 606 + + +A I +R + A S Sbjct: 764 GNIGLANAMIDNEDEQKRFTTFALRLSE 791 >UniRef50_A4S3Z4 Predicted protein (Fragment) n=37 Tax=Eukaryota RepID=A4S3Z4_OSTLU Length = 772 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 158/643 (24%), Positives = 249/643 (38%), Gaps = 104/643 (16%) Query: 10 AVEHKQLRPLDVQFALTVAGDEHPAVTLAAA----LLSHDAGEGHVCLPLSRLENNEASH 65 AV +D A + + L AA L + GH LP S++ + + Sbjct: 186 AVRGATFHRVD-ALASRLGKAPNDPARLGAAIIEVLSAAAVSSGHAYLPWSKIVDGVRAL 244 Query: 66 PLLATCVSEIGELQNWEECLLASQAV-------SRGDEPTPMILCGD----RLYLNRMWC 114 +T E+ +Q + + + + + + GD LY + M Sbjct: 245 LGQSTITDEL-SMQAAADAMRTKGEIRVQRLPTASTAAGSIEVFEGDWSTAALYTSAMHS 303 Query: 115 NERTVARFFNEVNHAIE--VDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVI 169 E VA + VD A + + L+ QK +AL +S++ Sbjct: 304 AEVAVASDVINRIRRPKIKVDSARVERWLEAAAQKEGWRTLSETQKDFVRLALESPVSIL 363 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 +GGPGTGKT ++ + + + APTG+AA RL E T + Sbjct: 364 TGGPGTGKTFATHVIVR----LWRAMGKSVVMCAPTGRAAQRLMEIT---------TAGR 410 Query: 230 KKRIPEDASTLHRLLGAQPGS-----------------QRLRHHAGNPLHLDVLVVDEAS 272 P +ST+HRLL + R A NP+ DV+VVDE+S Sbjct: 411 DIANPVTSSTIHRLLEFKAADALEGMEDDGPMQALSYKGRFSRDAKNPIQADVVVVDESS 470 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DLP+ + L+ A+P A+V+F+GD DQL SV G++L D+ A N Sbjct: 471 MLDLPLAAALLAAVPPSAQVVFVGDADQLPSVGPGSLLRDLLAARNVPS----------- 519 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 L +R + SGI + A AIN G D Sbjct: 520 --------------------IALTDIFRQAAASGIVRAAHAINSGAF---------LPLD 550 Query: 393 IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVA 452 I ++ ++++ E A LD + + P + Q+L +R G Sbjct: 551 IREQRHDPDCLWVSLPSETNASVEAVLDHILSDILPARGFSP-KDLQVLSPMRRGVASTG 609 Query: 453 GLNERIEQFMQQKRKIHRH-------PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG 505 LN ++ + + + + EG V+ RND +FNGD+G+ Sbjct: 610 SLNNWLQTSLNPSCESKKEVAVGGFSGDVTFREGDRVLQQRNDYDKEVFNGDLGVIQRID 669 Query: 506 QGTRVWFAMP--DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 D S L + +AMT+HK+QGSE+ L++ + P++ R Sbjct: 670 TKAGTAIVSFGADFKEVSYTKGELRDLIPAYAMTIHKAQGSEYRAVVLVMTNAHKPLLRR 729 Query: 564 ELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAALF 604 EL+YT VTRA+ L + A L+AAI T + R +GL Sbjct: 730 ELLYTGVTRAKELLVIVAPRTALAAAIDTAGKDRRCTGLVDRL 772 >UniRef50_C9LLQ3 Helicase, RecD/TraA family n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLQ3_9FIRM Length = 709 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 143/609 (23%), Positives = 237/609 (38%), Gaps = 91/609 (14%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAG-DEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 +++ + + +D + + + D V +LS GHVC P ++ Sbjct: 181 PYRMVSEIPGLGFKNVDRIALSEGIIPEDSDRIVHGIFYILSQAVSGGHVCGPSDQVYTA 240 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 + ++ + E + AV G P+ + LYL ++ E A Sbjct: 241 ASELLRVSPEIVETVGRE----------AVDFGTVPSVVYEGKTYLYLPYLYEAETESAY 290 Query: 122 FFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 + + A + A LA + Q+ A ++ + VI+ G T Sbjct: 291 RVHHLMEAGPLGSANLAIERFEKENGFRLAKEQRDAVEKSMKAGMMVIT----GGPGTGK 346 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 L+ A+I A+ L APTG+AA RL S G+ DA T+H Sbjct: 347 TTLIRAIITAAEQNGLEPALMAPTGRAAKRLAISSGR-----------------DADTIH 389 Query: 242 RLLGA---QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 + L A + G + NPL D+++VDEASM+D+ + L+ AL D AR+I +GD Sbjct: 390 KALEASVRETGRTYFERNEANPLEEDLIIVDEASMLDISLFYHLLCALKDGARLILVGDI 449 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 DQL V AG L D+ ++ + L++ Sbjct: 450 DQLPPVGAGEPLKDLMSWGYVP-------------------------------IVRLKRI 478 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 +R SGI + AA I +G+ ++GE I + Y Sbjct: 479 FRQEEGSGIVENAALIRKGEM---------------CVPDEAGEFRIVYAADDEDAYRIV 523 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYE 478 +DL + + + Q+L + G GV LNE +++ + ++ +++ Sbjct: 524 MDLCRELNYGNEENKML--LQVLSPMYRGVCGVDHLNESLQEMIHGEKV---PDGMKFFP 578 Query: 479 GRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTV 538 G VM RND G++NGD+G +V+ D + + + +A+TV Sbjct: 579 GDKVMQTRNDYEKGIYNGDVGTVW-TATPQKVFVRYFDKEVV-YEGEERFDLRLAYAVTV 636 Query: 539 HKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSA--AIATRTER 596 HKSQGSE++ IL + ++ R L+YT VTRAR+ L L AI R Sbjct: 637 HKSQGSEYETVIFILRPSQHNMLQRNLLYTGVTRARKNTILVTAPDALRRALAIQHTGNR 696 Query: 597 RSGLAALFS 605 S + Sbjct: 697 YSLFLPFLN 705 >UniRef50_A8VTZ2 Exodeoxyribonuclease V n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTZ2_9BACI Length = 766 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 142/637 (22%), Positives = 236/637 (37%), Gaps = 108/637 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCLPLSR 57 + +L+E +E + D Q + L A LL GH + + Sbjct: 191 QNPYRLVEDIEGIGFQKAD-QIGRKQGLTVNHGDRLKAGLLFCLQEETFSNGHTYIEATE 249 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L +LA + G + +E L+ Q + +E + R ++ ++ ER Sbjct: 250 L-------LVLADQLLSAGVTEPIDESSLSQQLL-ELEEEDKIRYENGRCFVPSLYHAER 301 Query: 118 TVARFFNEVNHAIE-VDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISG 171 + + + + +E VD+ A+ L V +E+ Q+ A L + +++G Sbjct: 302 GIVTHMDRLLNRMEQVDQFPEAEIYKALGEVEEELGITYAESQREAVFTGLHSPVMILTG 361 Query: 172 GPGTGKTTTVAKLLAALIQMA-----------DGERCRIRLAAPTGKAAARLTESLGKAL 220 GPGTGKTT + ++ ++ I +AAPTG+AA R+TES G Sbjct: 362 GPGTGKTTVIEGIVKVFGRLKGVSVDPAEYGKKDGPFPIVMAAPTGRAAKRMTESTG--- 418 Query: 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEASMIDLPMM 279 AST+HRLLG + ++ +P+ ++L++DE SM+D +M Sbjct: 419 --------------LPASTIHRLLGYKGENEGYFEKDDDDPIDGELLIIDEVSMVDTWLM 464 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 ++L+ A P +VIF+GD DQL SV G VL D+ A A Sbjct: 465 NQLLKATPTWMQVIFVGDEDQLPSVGPGQVLEDLLASDAAPN------------------ 506 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLL 398 L +R S I + I +D + Sbjct: 507 -------------VRLVDIFRQEEGSRIIDFSHQIKESRLPPEGIDTSNKDLRFFPCQT- 552 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 G + + A + Q+L + +G GV LN + Sbjct: 553 --------------QGVQTIVRQVCEGAVKKGYH--ARDIQVLAPMYKGEAGVDALNVML 596 Query: 459 EQFMQQKRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV----- 510 + KR+ R + G V+ ND +FNGD G + + Sbjct: 597 QNLFNPKRERVREVQFGEVTYRVGDMVLQLINDPENNVFNGDRGEIVSIIRAKETVEKVM 656 Query: 511 -WFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTA 569 +G + + L + T+HKSQGSEF + + ++ ++L+YT Sbjct: 657 KITISFNGEEVDYERNDLNMITHAYCCTIHKSQGSEFPIVVMPVVKSYWRMLRKKLIYTG 716 Query: 570 VTRARRRLSLYADERILSAAIAT--RTERRSGLAALF 604 TRA+ L L + L A+ T T RR+ L Sbjct: 717 ATRAKGYLILCGEWDALEKAVVTGEETLRRTTLKERL 753 >UniRef50_C9B1G0 Helicase RecD/TraA n=4 Tax=Enterococcus RepID=C9B1G0_ENTCA Length = 884 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 133/644 (20%), Positives = 229/644 (35%), Gaps = 121/644 (18%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSR 57 + QL+E +E + D A + + AA+L G+ + Sbjct: 187 ENPYQLVEDIEGIGFKRSDG-IAEQLGIEASSPQRFRAAVLHQIFAQSLQTGNTFIHAQD 245 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L + + + + + + E + RLY N ++ +E Sbjct: 246 LLEQTLRLLETSRPIEIAPD--------DLASTIIQLVEEGKIQQEETRLYENSLYFSEW 297 Query: 118 TVARFFNEVNHAIE---VDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRIS----- 167 +A + + E +++TL K+ + Q+ A A+ + Sbjct: 298 GIASSIERLLSRKKEIVYPEKKISKTLRKIEKHLGITYGSSQEEAIKEAIRSPLFILTGG 357 Query: 168 -------VISGGPGTGKTTTVAKLLAALIQM------ADGERCRIRLAAPTGKAAARLTE 214 VI+G + +L A L + E I LAAPTG+AA R+ E Sbjct: 358 PGTGKTTVING---------IVQLFAELNDLDLEPSKYSDETFPILLAAPTGRAAKRMNE 408 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 + G + T+HRLLG G ++ + L +L+VDE SM+ Sbjct: 409 TTG-----------------LPSGTIHRLLGLN-GREKAPSISPKELEGGLLIVDEMSMV 450 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG 334 D + + L ++P + +VIF+GD+DQL SV G VL D+ A Sbjct: 451 DTWLANTLFKSIPTNMQVIFVGDKDQLPSVGPGQVLHDLLAIDAIPKQ------------ 498 Query: 335 THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIE 394 L + YR G S I LA AI G A T Q+D + Sbjct: 499 -------------------ELTEIYRQGDGSSIIPLAHAIKNGQLPADFTQNQKDRSFFA 539 Query: 395 KRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGL 454 + +++ A D + Q+L + G G+ L Sbjct: 540 CDAYKIEPLIAQIVKRA----------------KDKGYTP-QDIQVLAPMYRGAAGIDAL 582 Query: 455 NERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------G 505 N+ +++ +K + + G V+ N +FNGD+G + Sbjct: 583 NKMMQEIFNPNDGTKKEVTFNDTVYRIGDKVLQLVNSPEDNVFNGDMGQIVGITLAKQSE 642 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 D N + + + + ++ ++HKSQGSEF L + Q ++ R L Sbjct: 643 DKVDELVIQFDANEVTYKRNEWNKITLSYCCSIHKSQGSEFQMVILPMVHQYQRMLQRNL 702 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTE-RRSGLAALFSSRE 608 +YTAVTR++ L L + + + + R + L + E Sbjct: 703 LYTAVTRSKEMLILLGEPQAYQTCVNHESATRLTTLKERINGTE 746 >UniRef50_C0XKM5 Exodeoxyribonuclease V alpha subunit n=3 Tax=Lactobacillus RepID=C0XKM5_LACHI Length = 837 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 132/632 (20%), Positives = 229/632 (36%), Gaps = 101/632 (15%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDA--GEGHVCLPLSRL 58 + QL+E + + D + L + + + G S L Sbjct: 203 ENPYQLVEDIRGISFKRADAIALKLGLTAASTERIRAGLLYAIQELCFENGDTYTTTSAL 262 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 N LL T Q E L+ + ++ GDR+YL+ ++ E Sbjct: 263 LNMAG--DLLDTNTEHQVSGQQLGESLI------ELAKEHKVVGEGDRIYLSYVYNAEVQ 314 Query: 119 VARFFNEVNHAIE-----VDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISG 171 +A N + + + + + + D + Q A A+ +++G Sbjct: 315 IAEHLNRIIKNKDDSEDHFSDDAIKNQIRMVESKFDINYDDSQSQAIIKAVKSPAFILTG 374 Query: 172 GPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQ 222 GPGTGKTT + ++ ++ + + I LAAPTG+AA +++S G Sbjct: 375 GPGTGKTTIINGIVNTYARLHEYSLDINEYKDKPFPIVLAAPTGRAAKHMSDSTG----- 429 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 AST+HRLLG G + + + + +L++DE SM+D + L Sbjct: 430 ------------LPASTIHRLLGLN-GQESADYTSPKDIEGSLLIIDEMSMVDTFLFRLL 476 Query: 283 IDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTG 342 + A+P+H ++IF+GD+DQL SV G V D+ Sbjct: 477 MRAVPNHMQIIFVGDQDQLPSVGPGQVFHDLLTSKQLPA--------------------- 515 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 L YR S I QLA I+ G + Q D + I Q Sbjct: 516 ----------IHLDNIYRQEKGSSIVQLAHDIHAGKLSDNFDQNQSDRSFIACNETQLPS 565 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF- 461 + A + D + + Q+L + G G+ LN ++ Sbjct: 566 VIEQVARRA--------------KDKDFGL---MDVQVLAPMYRGTAGIDHLNNILQNVW 608 Query: 462 -MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWF-----AMP 515 + K + G V+ N+ +FNGD+GI + Sbjct: 609 QVNPTGKSVTIRDHTYRIGDKVLQLVNNPEQNVFNGDLGIIVGMEAPKNQAIPTKIMIDF 668 Query: 516 DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARR 575 D + + + + + ++HK+QGSEF L + Q + ++ R L+YTAVTRA Sbjct: 669 DETEVTYEKNEWIQFTLAYCTSIHKAQGSEFPMVILPIVRQYSRMLQRNLLYTAVTRASD 728 Query: 576 RLSLYADERILSAAIAT-RTERRSGLAALFSS 606 L + +++ + + R++ L Sbjct: 729 FLIMLGEKQAFEQCVRSISVNRKTSLVQRLVE 760 >UniRef50_B2A0E3 Helicase, RecD/TraA family n=3 Tax=Bacteria RepID=B2A0E3_OPITP Length = 871 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 144/665 (21%), Positives = 237/665 (35%), Gaps = 111/665 (16%) Query: 8 LEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHV-------------- 51 ++ + D + L A D P + L EGH Sbjct: 243 AREIDGIGFKTADRIAINLGFANDAAPRLDAGLIFALETLQEEGHTAFGESDLCDYAANL 302 Query: 52 --------CLPLSRLE--------------------------------NNEASHPLLATC 71 C + L +E A+ Sbjct: 303 LETDSRLICARIDALVEAKQLVRHGGSGVAGVVDPGHGDVTPSSRPARRDEGVAAPSASG 362 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH--- 128 + + + + +R L + L E+ +A + Sbjct: 363 RVSVAAVADRGPGSTSPATPNRTSGSQLSALSSRLIQLPHNDRAEQKIAEVVQRLTRVAS 422 Query: 129 ---AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 185 I+ D A+ F + Q+ A ALT + S+++ G T +L Sbjct: 423 GLPPIKTDAAVTWAEQKAGFTFHEL---QRRAVRAALTSKFSILT----GGPGTGKTTIL 475 Query: 186 AALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 AL+++ ++ R+ LAAPTG+AA RL E+ G AST+HRLL Sbjct: 476 RALVEILKAKKVRVHLAAPTGRAAQRLAETTGGY-----------------ASTIHRLLK 518 Query: 246 AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 P + + PL D L+VDEASM+D + S L+ A+P A ++ +GD DQL SV Sbjct: 519 WDPAAGGFIANESTPLSTDFLIVDEASMLDTRLASALLQAVPARAHLLLVGDIDQLPSVG 578 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 AG VL D+ A + L+ + A + L YR S Sbjct: 579 AGNVLKDLIVVAEGSAPHPQLSTLN----------SQPAALRAAIPVTRLSVVYRQKDHS 628 Query: 366 GIGQLAAAINRGDKTAVKTVFQ----QDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 GI A AIN GD + + ++D+ ED + + + + Sbjct: 629 GIVSTAHAINSGDASLPPAFGEIADVPPWSDLAFITAADAEDCLRKVIQLCTEFVP---- 684 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 Q P + Q+L + +G GVA LN +++ + + R + Sbjct: 685 -QKLHWP----NPIADVQVLAPMHKGVAGVANLNVQLQAALNPHARGLRAATGEYRPADK 739 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 V+ RN+ LFNGDIG + A DG + + + + +++HKS Sbjct: 740 VIQLRNNYDKNLFNGDIGSVVSVDAEHGTMVAEFDGEQHTFERGDFSDLALAYTISIHKS 799 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSG 599 QGSE+ + L ++ R L+YTA+TR R+++ L + + A+ +R + Sbjct: 800 QGSEYPVVVIPLLKGHFMMLQRNLIYTAITRGRKKVYLVGEPAAYAMAVRNSESKQRLTH 859 Query: 600 LAALF 604 L Sbjct: 860 LREKI 864 >UniRef50_C5SAK6 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAK6_CHRVI Length = 740 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 264/734 (35%), Positives = 346/734 (47%), Gaps = 129/734 (17%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 L +L E LR LD+ + + PAV LA AL S G GHVCL L+ Sbjct: 5 ALLSRLDAWTEAGALRRLDLALTRFIRDQTPETDPAVLLAIALTSERNGHGHVCLDLAGA 64 Query: 59 ENNEASHPLLATCVSEIG--------------ELQNWEECLLASQAVSR----------- 93 N S + L +W L S A+ Sbjct: 65 LNRPYSVLTHRSDWLTPPPGPSTELAALLAPLTLDDWVARLARSGAIEDRLGLASDPGLP 124 Query: 94 -----------GDEPTPMILCGD----RLYLNRMWCNERTVAR-FFNEVNHAIEVDEALL 137 E P+IL G LYL R W E+ + + + + E Sbjct: 125 ARPAADTDARPNHEHPPLILDGAPERPLLYLRRYWTYEQRIRTGIAARLCRPVPLPEDAT 184 Query: 138 AQTLDKLF-------PVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ 190 LD LF P +D + WQ++A A+A R +VI+GGPGTGKTTTV +LLA L Sbjct: 185 RDLLDLLFAGDGSGTPGTDTLPWQRIACALAARRAFAVITGGPGTGKTTTVVRLLALLQG 244 Query: 191 MAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD-----EQKKRIPEDASTLHR 242 +A G RIRLAAPTGKAAARL S+ + QLP + IP +A TLHR Sbjct: 245 LALTAGGPPLRIRLAAPTGKAAARLNASIAAQVDQLPFDRLPGGRAMRAAIPTEAGTLHR 304 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 LLG +P S+ R+ A PL D++VVDEASMID+ +MS L+ AL AR+I LGD+DQLA Sbjct: 305 LLGPRPDSRHFRYGADRPLPADIVVVDEASMIDVELMSALLAALRPDARLIVLGDKDQLA 364 Query: 303 SVEAGAVLGDICAYANAG-FTAERARQLSRLTGTHVPAG-TGTEAASLRDSLCLLQKSYR 360 SVEAGAVLGD+C A +T L R+TG +P L ++ +L+ SYR Sbjct: 365 SVEAGAVLGDLCRRARQAHYTPPTRDWLQRVTGARLPDDLIDPSGRPLDQAIAMLRHSYR 424 Query: 361 FGSDSGIGQLAAAINRGDK---TAVKTVFQQDFTD---------------IEKRLLQSGE 402 F ++ GIG LA +N G + D +RL +GE Sbjct: 425 FRAEGGIGALAELVNAGVLDGRPVRDPLAALDRLFERQSDPSLQTDPGLGHLRRLRLTGE 484 Query: 403 DYIAMLEEALAGYGRYLD-------------------------LLQARAEPDLIIQAFNE 437 + AGY LD L + R D AF++ Sbjct: 485 PDTQLDHLVRAGYWHGLDSTGDSGSRTSHGAAGLDPVPGYLAVLHRERPGDDAGPDAFDD 544 Query: 438 -----------YQLLCALREGPFGVAGLNERIEQFMQQKRKIHR--HPHSRWYEGRPVMI 484 +QLL LR+GP+GV GLN RI+ + Q + +W+EGRPV++ Sbjct: 545 WARAVLQAQAGFQLLTPLRQGPWGVEGLNRRIQHLLSQGAQAPLTGAGERQWFEGRPVLV 604 Query: 485 ARNDSALGLFNGDIGIALDRGQGT---------RVWFAMPDGN--IKSVQPSRLPEHETT 533 RND ALGL NGDIG+ L RV F DG+ I+ + PSRL ET Sbjct: 605 TRNDYALGLMNGDIGLTLRVPSRRDGSAGRLVLRVAFPAGDGSGAIRWILPSRLQAVETV 664 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS-LYADERILSAAIAT 592 +AMTVHKSQGSEF+H AL+LP PV+TREL+YTA+TR++ + LY+ E ++ A+ Sbjct: 665 FAMTVHKSQGSEFNHTALVLPEASNPVLTRELIYTAITRSKSSFTLLYSRESVIREALGR 724 Query: 593 RTERRSGLAALFSS 606 R ER SGLA S Sbjct: 725 RVERVSGLAMALES 738 >UniRef50_C4V2J7 Exodeoxyribonuclease V alpha subunit n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2J7_9FIRM Length = 723 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 138/617 (22%), Positives = 234/617 (37%), Gaps = 95/617 (15%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 QL + V+ D + A + + L+ A GH C+P + L Sbjct: 190 TNPYQLAQEVDGIGFVTADTIAAACGWEKNSMERIAAGILFELAQIASNGHCCIPEALLI 249 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + A + ++I ++ E + AV E +Y +++ E Sbjct: 250 EHTAKRLGVE--HADIMDVLRREVKMHRVYAVDEMGE--------RLIYSPQLYHAEVET 299 Query: 120 ARFFNEVNHAIEV----DEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 A + E + A L T +K V+ Q+ A +L + +++ Sbjct: 300 ADLLRMLKQKAEPIHVHNPAALVSTWEKEHDVT-LAQQQRDAVIASLLHGVVILT----G 354 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T ++ ++I + + I LAAPTG+AA RL+E+ G Sbjct: 355 GPGTGKTTVIRSMIDIMGEQGLEILLAAPTGRAAKRLSEATGA----------------- 397 Query: 236 DASTLHRLLGAQP---GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 A+T+HR+L AQ G A L DV+++DE SM+D+ +M L+ A+ + Sbjct: 398 PAATVHRMLEAQGREDGEMHFARDAECMLEADVIIIDEVSMMDIVLMQHLLSAVLPGTHI 457 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 IF+GD DQL ++ G+VL D+ Sbjct: 458 IFVGDADQLPAIGPGSVLKDLLRSGVFP-------------------------------C 486 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L + +R + I A AIN G T + DF+ + + I + ++L Sbjct: 487 VRLTQIFRQNNRGTIVLNAHAINTGCMP---TFTEDDFSFVPAVSAEEAAKQILSICQSL 543 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHP 472 G + + Q+L +R GV N +++ + + + Sbjct: 544 IATGHSV----------------MDMQVLSPMRREACGVDAFNRTLQEALNPQTE-DNKL 586 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHET 532 + + G VM RND +FNGD+G + ++ D + Sbjct: 587 IAGFRSGDKVMQIRNDYTKNVFNGDVGRIVWIDT-EKLIVQYTDDVDVTYTRDEFVSLTL 645 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 + M+VHKSQGSE+ L L ++ R L+YTAVTRA++R+ L D L A++ Sbjct: 646 AYVMSVHKSQGSEYSTVILPLVRAHHIMLQRNLLYTAVTRAKKRVILVGDRTALFTAVSN 705 Query: 593 R--TERRSGLAALFSSR 607 R + LA + R Sbjct: 706 DRTRRRYTLLAERLAER 722 >UniRef50_C3CTA5 Helicase RecD/TraA n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CTA5_BACTU Length = 750 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 133/623 (21%), Positives = 229/623 (36%), Gaps = 98/623 (15%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAALL----SHDAGEGHVCL-------PLSRLE 59 + D A + + A+L +G +C+ L Sbjct: 197 ISKLDFTHADK-IAYALGKPSDGVERIKHAILFYIEHRMQSKGDICIFKDELLDSLEEFI 255 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 ++P I ++ + L S A+ + + +Y E + Sbjct: 256 VRVGAYPKNQMISVPIQKIDAILQGLFTSGALVTEENNDGKV----CIYRADYHRIENNI 311 Query: 120 ARFFNEVNHAIEVD-------EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGG 172 E+ H+ + + + + FP Q A +AL IS+++GG Sbjct: 312 VSGLKELVHSFKTPLCQKHHIDDFIQEYEKAYFP---LAEKQAEAVYMALLNGISILTGG 368 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 PGTGKT T ++ + ++ + I L APTGKA+ R+TE Sbjct: 369 PGTGKTQTTNTIVQCIKKV--NPKATILLLAPTGKASKRMTELTNM-------------- 412 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 DAST+HR LG N L D +VVDE SM+D + ++L++ + ++ R+ Sbjct: 413 ---DASTIHRGLGLNSFGGT---KELNQLTSDFIVVDEFSMVDAYLANKLVNNIGENTRI 466 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 +F+GD DQL SV G +L D+ + Sbjct: 467 LFVGDVDQLPSVGPGLILRDLIDSGKIP-------------------------------V 495 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L K +R +S I + + G T + D T ++ +Q + + ++ + Sbjct: 496 TKLDKVFRQAENSQIVMNSYKVIHGKTTKDPDGIRFDHTKGDEYFIQEKNSLV-IRKKII 554 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IH 469 R +D + ++ LL +R G G LN I+ Sbjct: 555 ESIQRMIDKYHYK---------LDDICLLSPMRIGDLGTDELNRAIQLHFNPPNSSMDYQ 605 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR---GQGTRVWFAMPDGN-IKSVQPS 525 R + + G V+ N+ LG++NG++G+ +V PD + Sbjct: 606 RDEFTTFRTGDKVIHTENNKDLGVYNGEVGVVSSIYTYEGEFKVDVEYPDREDPVAYTEK 665 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 + + + +A+T+HKSQGSEF + + + TR L+YT TRA++ L DE Sbjct: 666 DMEQLQLAYAITIHKSQGSEFPIVIMPFHESQLSMSTRNLIYTGRTRAKKILISIGDEET 725 Query: 586 LSAAIAT--RTERRSGLAALFSS 606 L+ I T R S + Sbjct: 726 LNKGILKVSDTNRNSRIKEKLQK 748 >UniRef50_D2AQX1 Exodeoxyribonuclease V n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AQX1_STRRD Length = 720 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 155/612 (25%), Positives = 236/612 (38%), Gaps = 93/612 (15%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSRLE 59 +L+ V D AL EH + AA+L A +GH LPL L Sbjct: 187 PYRLIGQVRGIAFHTADR-IALRSGVPEHSPQRIQAAVLDRLETAAARDGHCFLPLPALL 245 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 AS + + + L + V P G +Y E + Sbjct: 246 AAAASLVEQEEELIR----RAVDALLAERRVVVETAPDGP----GQVVYAKEQHGREVAL 297 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTT 179 A + A L Q+ A +ALT +SV++GGPG GK+ Sbjct: 298 AAHLARLLRARSTLP------LRAFEEHKGLDEDQRAAVNLALTSTVSVLTGGPGCGKSY 351 Query: 180 TVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAST 239 TV + A + M + L APTGKAA RL+E A T Sbjct: 352 TVRVIAATVRAM----GGTVTLTAPTGKAAKRLSELTR-----------------LPAMT 390 Query: 240 LHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 +HRLL QP + +P D++VVDEASM+DL + +RL A+P + ++ +GD D Sbjct: 391 VHRLLARQPEREEGTLFQQSPAEADLIVVDEASMLDLQLATRLTAAIPAGSHLLLVGDSD 450 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL S+ G+VL D+ L + + Sbjct: 451 QLPSIGPGSVLADLLRVEEVPR-------------------------------IRLARVF 479 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R DSGI Q A I G+ A+ F +++ Q + + + EA+ Sbjct: 480 RQAQDSGIVQAAHRIRAGELPALPGRGGFWFEELD-DPDQVADRVVHLATEAI------- 531 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK---IHRHPHSRW 476 P ++ Q+LC +R+G G A L R+++ + R+ H S + Sbjct: 532 --------PRKQDIGRDQVQVLCPMRKGATGTAELGRRLQERLNPAREGTAEHWSGPSVF 583 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 G VM RN+ G+FNG+ Q V DG + L E ++A Sbjct: 584 RVGDRVMPIRNNYDKGVFNGETATVTAVNPQDRLVEIRTDDGENVTYTFDELDELTHSYA 643 Query: 536 MTVHKSQGSEFDHAALILPSQRTP-VVTRELVYTAVTRARRRLSLYADERILSAAIATRT 594 ++VH+SQGSE+ + ++ ++ R L+YT VTRA+ + L L A+ Sbjct: 644 ISVHRSQGSEYPFVVAPIVAEAGGVMLRRRLLYTLVTRAKSWVVLVGQREALELAVHRLG 703 Query: 595 -ERRSGLAALFS 605 R +GLA + Sbjct: 704 YRRNTGLALRLA 715 >UniRef50_C3RPY6 Exonuclease V subunit alpha n=1 Tax=Mollicutes bacterium D7 RepID=C3RPY6_9MOLU Length = 737 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 150/604 (24%), Positives = 241/604 (39%), Gaps = 105/604 (17%) Query: 28 AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLA 87 D++ + L GHV + L +++ + LAT E+ Sbjct: 215 CIDDNRLFAGIISSLKSIRNRGHVYINLD---SSDYNLLNLATQKLEVDIS-------YI 264 Query: 88 SQAVSRGDEPTPMILCGDR----LYLNRMWCNERTVARFFNEV---NHAIEVDEALLAQT 140 +A+ + + +++ +Y+ +M+ E+ V++ ++ + + D+ + Sbjct: 265 KEAIFKLQKEEKIVITNYNNYKIVYMRKMYDAEQNVSKLCAKLVSNSKLKKRDKNRIHHY 324 Query: 141 LDKLFPV-SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRI 199 +D + QK A AL+ S+ISG PG+GKTT + + + + RI Sbjct: 325 IDNYEENHFKLADKQKEAIESALSNTFSIISGPPGSGKTTIIDVICSYFK--YYNKNIRI 382 Query: 200 RLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHHA 257 L APT KAA R+ +S G AST+HRLL P G +++ Sbjct: 383 NLCAPTAKAAKRMFDSTGI-----------------QASTIHRLLEFNPADGEGGFKYNE 425 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDH-ARVIFLGDRDQLASVEAGAVLGDICAY 316 NPL D+LVVDE SM+DL M L+ A+P+ +IF+GD +QL SV+AG VL D+ Sbjct: 426 YNPLKTDILVVDEFSMVDLLMTENLLKAIPETITALIFVGDINQLPSVDAGRVLEDMLQS 485 Query: 317 ANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR 376 LL K YR DS + L A++ Sbjct: 486 KIPS--------------------------------TLLNKIYRQQEDSTL--LQKALDF 511 Query: 377 GDKTAVKTVFQQDFTDI-EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAF 435 + +++ +DF EK L E + + + YG Sbjct: 512 SKEKSIELADTKDFFFYSEKNELAIQEGVVNLFISEVEKYG------------------I 553 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQK----RKIHRHPHSRWYEGRPVMIARNDSAL 491 LL EG FGV LN I+ + K R ++ G V+ N+ Sbjct: 554 ENVALLIPQNEGTFGVNTLNCLIQDKLNPKLFDTTPELRSGSRKFRIGDRVIHTVNEDNH 613 Query: 492 GLFNGDIGIALDR-------GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 +FNG +G D + + + R + +AMT+HKSQGS Sbjct: 614 NVFNGMVGTITDIEIGDKDFDTEDTIIVDYGEDELSEYHRDRFDNIKLAYAMTIHKSQGS 673 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-TERRSGLAAL 603 E+ +IL ++T++LVYT +TRA+ L L DE ++ A+ R S L L Sbjct: 674 EYKSVIMILHMANRFMLTKKLVYTGMTRAKSYLHLVGDEYAVNYAMKRNIPPRNSRLDIL 733 Query: 604 FSSR 607 + Sbjct: 734 LKTI 737 >UniRef50_D0BKH5 Helicase, RecD/TraA family n=2 Tax=Granulicatella RepID=D0BKH5_9LACT Length = 845 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 134/640 (20%), Positives = 232/640 (36%), Gaps = 124/640 (19%) Query: 4 QKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAG--EGHVCL-PLSRLE 59 LL+++E R +D + L +A D + A ++ D EGH L + Sbjct: 187 PYVLLQSIEGLGFRRIDAIAQQLEIAADSLYRIKGAVYVVVRDLSYQEGHTYLIDKEVVL 246 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + + + E ++ N L+ +I + L L ++ E + Sbjct: 247 AAQKLLEQTRSFLIEPDQIVNALNELIR---------EGIIISEENHLSLASLYYAEIGI 297 Query: 120 ARFFNEV------NHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISV----- 168 + +H E D Q + K F + + QK A + + + Sbjct: 298 VNAIHHRLELSKKSHYSEEDIEEAIQHVQKKFGII-YDDSQKQALIKIMQESLFILTGGP 356 Query: 169 -------ISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 I+G V ++ L ++ D + I+LAAPTG+AA R+ E G + Sbjct: 357 GTGKTTIING---------VVEMYRYLEEI-DVDSDAIQLAAPTGRAAKRMNELTGIS-- 404 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRH----HAGNPLHLDVLVVDEASMIDLP 277 AST+HR+LG L D L++DE SM+D Sbjct: 405 ---------------ASTIHRMLGISAEENVELESDDSDDTRSLSCDFLIIDEMSMVDTW 449 Query: 278 MMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHV 337 +M+RL+ A P +++F+GD++QL SV G VL D Sbjct: 450 LMNRLLRATPGKTKILFVGDKNQLPSVGPGQVLTDFLLSNKIPS---------------- 493 Query: 338 PAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRL 397 L +R S I LA +I G T Q D T I R Sbjct: 494 ---------------IELTHIHRQKDSSSIVTLAHSIKDGHLPMDFTQNQPDRTFIPCRS 538 Query: 398 LQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNER 457 Q + ++ +A+ + + Q+L + +G G+ +N+ Sbjct: 539 TQILDVIEQIVVKAIKKGYQK-----------------KDIQVLAPMYKGEAGIHEINKM 581 Query: 458 IEQFMQQKR----KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-------GQ 506 ++ + K + + G V+ N + ++NGDIG Q Sbjct: 582 MQNILNPKIGNSVREIESFDRVFRVGDKVLQLVNVAEENIYNGDIGEVTAIIFAKENEDQ 641 Query: 507 GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV 566 +++ A D + + + + ++HKSQGSEF L + Q ++ R L+ Sbjct: 642 VDKLYVAF-DNVEVEYKRNDFIQLTHAYCCSIHKSQGSEFQMVILPMVGQYQRMLERNLL 700 Query: 567 YTAVTRARRRLSLYADERILSAAIATRT-ERRSGLAALFS 605 YTAVTR+++ L + A ++ R++ L L Sbjct: 701 YTAVTRSKKFLIMCGQYEAFQEAANRQSARRQTCLKDLLQ 740 >UniRef50_Q1J056 Helicase RecD/TraA n=3 Tax=Deinococcus RepID=Q1J056_DEIGD Length = 726 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 151/601 (25%), Positives = 226/601 (37%), Gaps = 99/601 (16%) Query: 11 VEHKQLRPLDVQ-FALTVAGDEHPAVTLAAALLSHDAGE--GHVCLPLSRLENNEASHPL 67 VE D A A D+ +T AA AG+ GH LP +R E + Sbjct: 221 VEGIGFLTADRLWQAQGGAQDDPRRLTAAAVYALQQAGQQGGHAFLPRARAERGVLHYTR 280 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 ++ + + A++ D+PTP R+YL + E+ +A + Sbjct: 281 VSPEQARLAVE-------TATELGRLADDPTPA--GESRIYLPHVLRTEKKLAGLIRTLL 331 Query: 128 HAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAA 187 A+ + Q + R+ V++GGPGTGK+T + Sbjct: 332 ATPP----AGAEWAVPVGAAQGLSEEQARVLQLLEDHRLVVLTGGPGTGKSTATRAV--- 384 Query: 188 LIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQ 247 +A+ + L APTGKAA RL E G+ AST+HRLLG Sbjct: 385 -ADLAERLGLEVGLCAPTGKAARRLGEVTGR-----------------PASTIHRLLGYG 426 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 P RH+ P D+L+VDE SM +M L+ A+ ARV+ +GD DQL V++G Sbjct: 427 PAG--FRHNHLEPAPYDLLIVDEVSMTGDALMLSLLAAVAPGARVLLVGDTDQLPPVDSG 484 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 L I A L YR +++ I Sbjct: 485 LPLLAIAQTA---------------------------------PTVRLSTVYRQAAENPI 511 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 + A + G + + D+ + G +A++ L G GR Sbjct: 512 IRAAHGLLHGQAPS----WGDPRLDLTETEPDVGARRVALMVRDLGGPGR---------- 557 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 Q+L +R+GP GV LN ++ R G V+ +N Sbjct: 558 ----------VQVLTPMRKGPLGVETLNRHLQALFNPGEGGTRIADGEARPGDVVVQTKN 607 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFD 547 D +FNG +G L G DGNI + + L + +A+TVH++QGSE+ Sbjct: 608 DYQNEVFNGTVGTVLKAEGGR--LTVDFDGNIVELAGAELFNLQLGYALTVHRAQGSEWP 665 Query: 548 HAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAI-ATRTERRSGLAALFSS 606 +L P+++R L YTA+TRAR R A R ER + L Sbjct: 666 TVLGVLHEVHMPMLSRNLAYTALTRARERFLAVGSASAWEKAAGRQREERNTALLERIRR 725 Query: 607 R 607 R Sbjct: 726 R 726 >UniRef50_C1MI09 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MI09_9CHLO Length = 1068 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 156/681 (22%), Positives = 248/681 (36%), Gaps = 129/681 (18%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAALLS----HDAGEGHVCLP-------LSRLE 59 + D A + LAAA+L + + EGHV L ++RL Sbjct: 390 LRGATFHRAD-ALAARLGKSADDPARLAAAMLQVLNVNASSEGHVYLHWREMRDGVARLL 448 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDR--------LYLNR 111 + + L + + ++ + A ++G + + ++ Sbjct: 449 GPKQAAGLQKGALVAAADELLAKKRINRIVAPAKGADEAASASDDEHDASWARYGVFAAV 508 Query: 112 MWCNERTVARFFNEVNH--AIEVDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRI 166 ++ E VA+ D + + L Q+ +AL I Sbjct: 509 LYDAEAHVAKDIARRLKMQKRAPDVPRVRRWLKAAAEREGWRLLSPAQEAFLDLALREPI 568 Query: 167 SVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 SV++GGPGTGKT V +++ ++ + APTG+AA RL E + Sbjct: 569 SVLTGGPGTGKTFAVH----IAVRLWRAMGRKVLMCAPTGRAAQRLAEI---------AS 615 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQ--------------------RLRHHAGNPLHLDVL 266 + P +ST+HRLL + G + + +PL DV+ Sbjct: 616 AGRSMSSPVQSSTIHRLLEQRAGKRGGAGEEDDDPSDALEFAWKGKFARCKASPLDADVV 675 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 VVDE+SM+DLP+ + L+DA+ A+V+F+GD DQL SV G+VL D+ Sbjct: 676 VVDESSMLDLPLCAALLDAVKPDAQVVFVGDADQLPSVGPGSVLRDVLQSRAVPA----- 730 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 L + +R SGI + A ++N G V T Sbjct: 731 --------------------------VQLSEVFRQAEQSGIIRAAHSMNAGRIPEVPTRR 764 Query: 387 QQDFTDIEKRLLQ-------------------------SGEDYIAMLEEALAGYGRYLDL 421 D T + ++ + E+ Y L Sbjct: 765 WDDATRTIVGPGPGGGGGSSSNANQSGPLSYQTETWEGADCVWVTVPEDGENAYEGALAA 824 Query: 422 LQARAEPDL-IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWY 477 L A P L + + Q+L R G + LN +++ + R + + Sbjct: 825 LFDGALPALDGLNPTTDLQVLTPFRRGVASTSQLNVFLQERLNPPSDGRLETKAGEITFR 884 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDG---------NIKSVQPSRLP 528 EG V+ RND +FNGD+G V + S L Sbjct: 885 EGDRVLQQRNDYVKEVFNGDLGTVDAVNGDGSVRVVFGGAAAAAALVPAREVTYSRSELR 944 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSA 588 + WA+TVHK+QGSE+ L L P++ RELVYTA +RA+ L + + ER L Sbjct: 945 DLLPAWALTVHKAQGSEYKAVVLCLAENHRPLLRRELVYTAASRAKEVLVILSPERALRT 1004 Query: 589 AIAT--RTERRSGLAALFSSR 607 A+ T R + LA S Sbjct: 1005 AVQTVGNNSRNTSLARRLSPH 1025 >UniRef50_UPI0000E0F58B exodeoxyribonuclease V, alpha subunit n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0F58B Length = 674 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 151/605 (24%), Positives = 269/605 (44%), Gaps = 42/605 (6%) Query: 36 TLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN-----------WEEC 84 +A LL G+ + L+ L NN+ + + ++ E Sbjct: 56 FVAMLLLQQAQCAGNSYIDLTSLVNNQFFEKMDSDNPTQYATENGQSLTGAQCTSYEEIE 115 Query: 85 LLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF-NEVNHAIEVDEALLAQTLDK 143 + ++ +++ RL+ +++ E+ +++ ++ + E + ++ Sbjct: 116 MSIQALIAHPIHGQLLVIDKQRLFSRKVYEYEQFISQQISQKITTSNERLNPNVKTVFEQ 175 Query: 144 LFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 L+P + WQ +A+ AL + +I+GGPGTGKT TV + L L +R L A Sbjct: 176 LYPSPIKNIWQAIASVTALNQSFFIINGGPGTGKTYTVIRTL-LLHLAQADKRLNFALCA 234 Query: 204 PTGKAAARLTESLGKALRQL---PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 PTGKAA R++ES+ ++ L + E IP AST+HRLLG ++H GNP Sbjct: 235 PTGKAAQRMSESIVNEVQHLSRQGIAPELLANIPTTASTVHRLLGLGYHRNYAKYHQGNP 294 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 L DVLV+DEASM+D +M R++ A+ R++ +GD QL SVE+G +L D+ Sbjct: 295 LPHDVLVIDEASMLDTRLMFRILSAVKPSTRILLIGDTAQLPSVESGNILKDVMPVHVNQ 354 Query: 321 FTAERARQLSRLTGTHVP------AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 F++ + + ++ A E + D L + R S + +LA AI Sbjct: 355 FSSTMMQWVESVSSELSSQYLTSCAEIPGENSQWNDYAATLLTNMR--STHHVNELANAI 412 Query: 375 NRGDKTAVKTVFQQ----------------DFTDIEKRLLQSGEDYIAMLEEALAGYG-R 417 + + T T + + + + Sbjct: 413 YQNNVNGAITALDNVITRWSTSSPKLSNLASSTLLYRPDEVDEQQVKQNFNALIKTMSDA 472 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 Y L + EP + ++++L +R G+ G+N+ I+Q + Y Sbjct: 473 YFKPLLSMLEPTDALALLRQFRILSPIRHSAMGIEGINKAIDQLLDPSTNKSADSDRHLY 532 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRG-QGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 G+ ++I +ND LG++NGD G+ L Q + D ++ P R+ + ++ +AM Sbjct: 533 HGKAILITQNDMQLGIYNGDSGVILRNEAQQLTAYIDRGDQAPLAISPYRIAKFQSAYAM 592 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTER 596 T+HK+QGSEFD ++LPS +++EL+YT +TRA++ +++ AI T R Sbjct: 593 TIHKTQGSEFDQVLIVLPSGLIHPMSKELLYTGITRAKQYVAVTGAAPDFVKAIYTTHAR 652 Query: 597 RSGLA 601 + + Sbjct: 653 HTNIV 657 >UniRef50_C0QIP1 RecD3 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIP1_DESAH Length = 733 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 139/609 (22%), Positives = 228/609 (37%), Gaps = 90/609 (14%) Query: 9 EAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA-LLSHDAGEGHVCLPLSRLENNEASHP 66 + V D + D+ + LL +GHV L S Sbjct: 198 KDVPEAGFEVADAIALKAGFKPDDPERIKACLLFLLCKKECDGHVFAEFEALNLGCESLT 257 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 E +A+ + +++ D++YL R+ E+ +A + Sbjct: 258 GAGREDVE--------------KALGALADAGEVVVEQDQVYLKRLHMAEKGIAERIRAM 303 Query: 127 N----HAIEV-DEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTV 181 + +++ DEA+ + +L Q + R+ VI+ G T Sbjct: 304 LCVPINPVDLSDEAITMEVATRLA--VKLSQEQIDVVKQVMAHRVVVIT----GGPGTGK 357 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 L+ A+ + R + LAAPTG+AA RL++ + ASTLH Sbjct: 358 TTLIRAVCAVLKKLRKTVTLAAPTGRAARRLSQVT-----------------DKKASTLH 400 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 RLL P + + NPL DV++VDEASM+D +M L+ A+P ++ +I +GD QL Sbjct: 401 RLLLCDPDTGEFARNLSNPLDSDVVIVDEASMVDTMLMFNLLLAVPVNSSLILVGDIFQL 460 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SV G VL DI A L + +R Sbjct: 461 PSVGPGNVLSDIIASK-------------------------------AVKTFSLTRIFRQ 489 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 S I A AI G+ ++ ++ S E +A + E + Sbjct: 490 AEQSPIVMNAHAIRNGEMPCLEN-SSDGLSEFYFIESASPERVVATIVELCSNRI----- 543 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 +E Q+L + +G G LN++++Q + + + G Sbjct: 544 -------KKAFPHVDEIQVLTPMHKGEAGTINLNQKLQQVLNKAAGGIEARGLTFKTGDK 596 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 VM +N+ +FNGDIGI + + DG + L E +A++VHKS Sbjct: 597 VMHLKNNYQKEVFNGDIGIVHEVVKSEGRLSVDYDGRVVDYDLLELDELTLAYAVSVHKS 656 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSG 599 QGSE+ + + Q P++ R L+YTA+TR + + + R + A+ R SG Sbjct: 657 QGSEYSAVVIAMTVQHYPLLQRNLLYTAMTRGKNLVIVVGSRRSMEIALHNNRTDCRLSG 716 Query: 600 LAALFSSRE 608 L E Sbjct: 717 LCRRLEMPE 725 >UniRef50_D0L8X2 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Corynebacterineae RepID=D0L8X2_GORB4 Length = 641 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 185/625 (29%), Positives = 275/625 (44%), Gaps = 45/625 (7%) Query: 6 QLLEAVEHKQLRPLDVQ----FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 L L DV L AL G CL L R + Sbjct: 24 ILARWNAAGVLAAADVHVTDRLTRMCGEPLSDLALLGTALAVRAVRLGSTCLALDR-IGD 82 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP--TPMIL----CGDRLYLNRMWCN 115 P V + L V P++L G LYL + + Sbjct: 83 IPGLPDQPDLV--LPAPAELLSELRRCPLVVGTGAGPLRPLMLMGSDDGPLLYLQKYFRQ 140 Query: 116 ERTVAR-FFNEVNHAIEVDEALLAQTLDKLF---PVSDEINWQKVAAAVALTRRISVISG 171 E T+ + +VD L +D +F S+ ++ Q++AAAV +R +V++G Sbjct: 141 EETIRTVLAARAATSPQVDPDRLRSAIDTVFGDVTSSETVDLQRLAAAVVASRWTTVLAG 200 Query: 172 GPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKK 231 GPGTGKT TVA++LA L Q+ G R+ L APTG+AAA+L S+ Sbjct: 201 GPGTGKTYTVARILAVL-QIVHGGSLRVGLCAPTGRAAAQLQASVSPGGSAGLDPTLITG 259 Query: 232 RIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 291 A T+H LLG PGS R G+ L DV+VVDE SM+ + MSR++DA AR Sbjct: 260 AGALHAVTVHSLLGWYPGSN-PRFGRGHTLPHDVIVVDETSMLSMTAMSRVLDAARPDAR 318 Query: 292 VIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL----------TGTHVPAGT 341 VIF+GD QLASV+AGAVL D+ + A Sbjct: 319 VIFVGDPHQLASVDAGAVLADLVERTDTDPGPAAGESAHASIALQAAGIGPERVSAEAIG 378 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 EAA + + L++ YRFG A + + D +DIE Sbjct: 379 PGEAARISRGVITLRREYRFGGGIAAVAAAVN-AGDATRVIDLLTDPDVSDIELIAP--- 434 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 D I + +GR L + ++A + +++LCA REG +GV G + R+ ++ Sbjct: 435 -DNIDATRPDVTAWGRELRTAALACDAHAAVEALDSHRVLCAHREGYWGVRGWSRRVAEW 493 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL-----DRGQGTRVWFAMPD 516 + W+ G+P+++ ND FNGD G+ + RV F Sbjct: 494 LGHDADRP-----GWFAGQPILVTANDRQTRTFNGDTGVIIRDPHSGDPDDLRVAFRRG- 547 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 G ++ ++ ++L E T +AMT+H+SQGS+FD ++LP + ++TREL+YTA+TRAR Sbjct: 548 GEVRLLRRTQLAEISTVYAMTIHRSQGSQFDRVTVVLPPSGSELLTRELLYTAITRARTA 607 Query: 577 LSLYADERILSAAIATRTERRSGLA 601 + + A ++ AA+ R +R SGL Sbjct: 608 VRVVAAPDVVRAAVERRVQRASGLR 632 >UniRef50_Q7NQR4 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chromobacterium violaceum RepID=Q7NQR4_CHRVO Length = 565 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 246/585 (42%), Positives = 317/585 (54%), Gaps = 42/585 (7%) Query: 25 LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEEC 84 +A D V LS+ GHVCLPL+ + Sbjct: 17 QRLAPDVDDRVLALIGELSNANLAGHVCLPLAH---------------------RGEAAA 55 Query: 85 LLASQAVSRGDEPTPMILCG-DRLYLNRMWCNERTVARFFNEVNHA-IEVDEALLAQTLD 142 L S V R E P+IL RLY R W +E + + + DEA LA L+ Sbjct: 56 LRGSPLVGRPGEYAPLILDEAGRLYFARHWHDEDRLVQGLERLAQPLPPQDEARLADWLN 115 Query: 143 KLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR 200 +LFP + E + QK+AAA+A +R+ VISGGPGTGKTTTV +LLA L M+ + Sbjct: 116 RLFPGAGDGEPDRQKLAAALAARQRLMVISGGPGTGKTTTVVRLLALLAAMSPRP-LVMA 174 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 +AAPTGKAAARL+ES+ A +L D ++++P A TLHRLLG +PG + RHHA NP Sbjct: 175 MAAPTGKAAARLSESVRAARDRLDADDAVRRQLPAQAETLHRLLGLRPGVEAPRHHASNP 234 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 L LDVLVVDEASMIDL +M+R + ALP AR+I LGDRDQL+SVEAGAVLG++C Sbjct: 235 LPLDVLVVDEASMIDLSLMARTVAALPSQARLILLGDRDQLSSVEAGAVLGELC--GRIA 292 Query: 321 FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 + E ++ L R+ G + G +L D + LL +S+RFG+DSGIG+LA +N G+ Sbjct: 293 YRDETSQWLQRVAGAVLQ-GDAAPGGALTDCVALLTRSHRFGADSGIGELARRVNAGEGQ 351 Query: 381 AVKTVFQQ-DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 V + D+ ++ E LA YLD + A A D +AF+ + Sbjct: 352 GSLHVLDDAGWPDVWRQDAADD-------AELLARRRGYLDAVAAGAGADEAQRAFSAFM 404 Query: 440 LLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIG 499 LL A R VA N RIE+ ++ + P WY GRPVMI ND LGLFNGDIG Sbjct: 405 LLAAERRQ---VADCNRRIERELEAAG--VKQPGRDWYPGRPVMIGENDYGLGLFNGDIG 459 Query: 500 IALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP 559 AL R G RV F DG + P RLP HET +AMTVHKSQGSE+D L LP Q Sbjct: 460 FALQRPSGLRVLFPSADGGWREFAPGRLPAHETVFAMTVHKSQGSEYDEVWLQLPQQAGA 519 Query: 560 VVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 ++ R L+YTA+TRA+ R + D R SGL Sbjct: 520 LLNRALLYTAITRAKLRFAAVGDAEAWLRGAELAPRRDSGLGDRL 564 >UniRef50_B2G6M2 Exodeoxyribonuclease V alpha subunit n=8 Tax=Lactobacillus RepID=B2G6M2_LACRJ Length = 828 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 140/629 (22%), Positives = 235/629 (37%), Gaps = 100/629 (15%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA--LLSHDAGEGHVCLPLSRL 58 + QL ++ D V L +A D+ + A L G L Sbjct: 198 ENPYQLAAEIDGISFNRADQVAQKLGIATDDSRRIDAAIIQTLDDLTMETGDTFTTTKPL 257 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + L+A+Q V ++ + +++Y ++ E Sbjct: 258 LQQTIQLLAQGSGGRVSTD-------LIANQIV-ELEKNQAISYADEKIYPTALYNAEWQ 309 Query: 119 VARFFNEVN--HAIEVDEALLAQTLDKLFPVSDEINWQ--KVAAAVALTRRISVISGGPG 174 +A + + +V + +T+ K+ S Q K A AL ++ +++GGPG Sbjct: 310 IADHLHRLLTVDQEKVPATTIEKTVTKVADQSGITYDQVQKEAIKTALNSKVMLLTGGPG 369 Query: 175 TGKTTTVAKLLAALIQM---------ADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 TGKTT + ++A+ ++ + + LAAPTG+AA R++E+ Sbjct: 370 TGKTTIIKGIVASYAKIHDLSLDVNEYKEKSFPVLLAAPTGRAAKRMSEAT--------- 420 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 AST+HRLLG +A + L +L++DE SM+D + LI A Sbjct: 421 --------DLPASTIHRLLGLNGREMPTDMNARD-LEGSLLIIDEMSMVDTLLFKTLIQA 471 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 +P V+ +GD+DQL SV G V D+ +A Sbjct: 472 VPTSMHVVLVGDKDQLPSVGPGQVFHDLLDFAELPK------------------------ 507 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L +R +DS I LA AI G + T D + I Q Sbjct: 508 -------VELTNIHRQAADSTIIPLAHAIKEGKLPSDLTNKMPDRSFISCHANQVP---- 556 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 + + +DL + R + N+ Q+L + G G+ LNE +Q Sbjct: 557 -------SVVQQIIDLSKKRD------YSANDIQILAPMYRGQAGIDRLNELAQQAYNPP 603 Query: 466 ---RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV------WFAMPD 516 ++ + G V+ N +FNGDIG G V D Sbjct: 604 ANGKQEVDFRGLTFRVGDKVLQLVNVPEKNIFNGDIGKITAIESGRTVGKKNESITVDFD 663 Query: 517 GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRR 576 GN S + + +++HK+QGS+F L + Q + ++ R L+YTA+TRA + Sbjct: 664 GNEVSYSRMEWNQLRLAYCISIHKAQGSQFKMVLLPIVQQFSRMLQRNLLYTAITRAAEK 723 Query: 577 LSLYADERILSAAIATRT-ERRSGLAALF 604 L L + ++ R++ L Sbjct: 724 LVLIGEPYAAVTSVKNEAVNRKTSLVDRL 752 >UniRef50_A0LD23 Helicase, RecD/TraA family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD23_MAGSM Length = 742 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 139/621 (22%), Positives = 231/621 (37%), Gaps = 93/621 (14%) Query: 2 KLQKQLLEAVEHKQLRPLDVQ-FALTVAGDEHPAVTLAA--ALLSHDAGEGHVCLPLSRL 58 + L + V + D L + + + L+ EGH L R Sbjct: 195 ENPYLLAQ-VRGITFQRADAAALQLGMQRLDPRRIEAGMQEILIQLANNEGHTLLEEPRF 253 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAV---SRGDEPTPMILCGDRLYLNRMWCN 115 L ++ + E L Q G + +P + L R Sbjct: 254 HQQLTVLLALQGHQDQLNLVPMVLERLDLGQGPLVRVYGRDGSPFVQ------LTRYHDY 307 Query: 116 ERTVARFFNEVNHAIEVDEALLAQTLDKLFPV-SDEINWQKVAAAVALTRRISVISGGPG 174 E+ +A + ++ ++ + ++++ Q+ A ++++++GGPG Sbjct: 308 EKQIAYHISRLHGPSPIET-ISDGWIERVSRGHFSLSVDQRQALKTITQDKVAILTGGPG 366 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 GKTT ++ ++ + ++L APTG+AA +L E+ G Sbjct: 367 MGKTTITRYVIEHAVE----NKQTVKLCAPTGRAAKQLAEATG----------------- 405 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 E A T+HRL+G D+LVVDE+SM+D M S L+ LPDH R++ Sbjct: 406 EVALTIHRLMGKGSDESV---DGQRKFECDLLVVDESSMMDEWMASSLLQMLPDHCRLLL 462 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL SV AG VL D+ + Sbjct: 463 VGDADQLPSVAAGRVLQDLIQSGVVP-------------------------------VAR 491 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L + +R SGI A I G + +DF + E L G Sbjct: 492 LTEVHRQAEGSGIALGAVEILHGRRPQ----MARDFKFVAVTG--GMEHLHQCANRMLEG 545 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRH 471 + + + E Q++ + GV LNER+ + + +++ Sbjct: 546 IDKMM---------RVGGIDGAEIQVITPMHGTEVGVKALNERLHEQLNPYQAGQEVLEL 596 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRG---QGTRVWFAMPDGNIKSVQPSRLP 528 + G +M +ND L LFNGD G ++ QG A D K + ++ Sbjct: 597 DGFAYRAGCRIMQTKNDYDLELFNGDQGEIVEISKDAQGELQVIAKFDEAQKLLDREQMG 656 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSA 588 +A+TVHKSQG +F++ + + ++ R L YT VTRAR+ + L L Sbjct: 657 NIVPCYAITVHKSQGGQFNYVVTPVVTAHGKMLYRNLFYTCVTRARKGVVLVGSYEALVM 716 Query: 589 AI--ATRTERRSGLAALFSSR 607 AI +R +GL + R Sbjct: 717 AISYKENMQRNTGLLSRIEER 737 >UniRef50_C2E8D7 Exodeoxyribonuclease V alpha chain n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E8D7_9LACO Length = 795 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 131/628 (20%), Positives = 237/628 (37%), Gaps = 114/628 (18%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGD-EHPAVTLAAALLS---HDAGEGHVCLPLSRLENNE 62 L + + +D Q A + + L A L S G+ + + Sbjct: 188 LATEIRGLGFKRID-QIAQGMGISFDDQKRILGAVLTSLYEECYSNGNTY--ANDKLLLK 244 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA-- 120 S LL SE + + + ++ +++ G R+Y ++ +E+ +A Sbjct: 245 KSLQLLEGARSEKVDPEKVADTII------EAGHKRKIVIEGKRIYPKSLYNSEQEIAYD 298 Query: 121 --RFFNEVNHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRIS--------- 167 R N + IE DE + + L+ + Q A A+ + Sbjct: 299 LYRLMNNRDEPIEYDEDEIDRCLEDVQTEFSITYGQDQLQAIKDAIKSPVFLLTGGPGTG 358 Query: 168 ---VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLP 224 ++ G + ++ L ++ + I+LAAPTG+AA ++ + G Sbjct: 359 KTTILRG---------ITEVYMKLNKIDRKDAKGIKLAAPTGRAAQKMANATGM------ 403 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 DAST+H LLG G + + + L+ +L++DE+SM+D +M L+ Sbjct: 404 -----------DASTIHHLLGIT-GGNEISANDLDYLNGTLLIIDESSMVDTELMHMLLS 451 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTE 344 +PD +VIF GD++QL SV G V D+ Sbjct: 452 CIPDSMQVIFCGDKNQLPSVGPGRVFADMLESMQIPSK---------------------- 489 Query: 345 AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 L YR G S I +L+ +I G+ + D + I+ Sbjct: 490 ---------ELTHIYRQGDGSSIVKLSRSIVNGEVPSDLLEKTGDRSFIKCSG------- 533 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 E+ + R + ++ + Q+ ++ Q+L + GP G+ LN + M Sbjct: 534 ----EQVCSVTKRIVQIVLKKG------QSADDIQVLAPMYMGPAGINQLNRTLAPLMNP 583 Query: 465 KR---KIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR----VWFAMPDG 517 R K + ++ G V+ +N+ +FNGDIG + + + +G Sbjct: 584 TRLNAKSVESGENEFHIGDRVLQLQNNPEKNIFNGDIGKIIAINESQKGRGTTMTVRFEG 643 Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 ++ + + M++HKSQGSEF L + Q + + R L+YTA+TRA+ +L Sbjct: 644 REVELEQADFLNLTLAYCMSIHKSQGSEFSIVILPMVRQYSRMYARNLLYTALTRAKLKL 703 Query: 578 SLYADERILSAAIATRT-ERRSGLAALF 604 L + + I R + L Sbjct: 704 MLIGEPSAYANCIRAEALNRETMLKQQI 731 >UniRef50_C4FTN2 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTN2_9FIRM Length = 839 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 149/636 (23%), Positives = 232/636 (36%), Gaps = 106/636 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSR 57 L+ VE D A + + L A L + G + R Sbjct: 187 NNPYALVAKVEGVGFNKAD-ALAEQLGIEADAVTRLVAGLYTAVSEVCLRSGDTYVQRPR 245 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L + E ++A+ + + L ++ E Sbjct: 246 LLALATKILERSR--------AYLIEEERLAEALDLAILEGTLYSLDQGIMLPSLYHAEM 297 Query: 118 TVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI-----NWQKVAAAVALTRRISVISGG 172 + R ++ EV+ + DKL V+ E Q+ A +A+ +SVI+GG Sbjct: 298 GIVRRISDFFQYEEVETFSKTEIEDKLDQVARETGINYDETQRQAMILAMQSPLSVITGG 357 Query: 173 PGTGKTTTVAKLLAALIQMADG----------ERCRIRLAAPTGKAAARLTESLGKALRQ 222 PGTGKTT + +L L ++ G + + LAAPTG+AA R+ E Sbjct: 358 PGTGKTTLIRGIL-TLHRLLHGYHQGDLTNPYQTGPVLLAAPTGRAAKRMQEMTDI---- 412 Query: 223 LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRL 282 AST+HRL+G + PL +LVVDE SM+D +M+ L Sbjct: 413 -------------PASTIHRLIGFNRETTVEGFDPT-PLEGQLLVVDEMSMVDTWLMNWL 458 Query: 283 IDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTG 342 A+ +VI +GD+ QL SV G V D+ Sbjct: 459 WMAIGYRIQVILVGDKHQLPSVGPGKVFSDLIESGVLP---------------------- 496 Query: 343 TEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE 402 L K YR DS I QLA I +G Q D + I + Q + Sbjct: 497 ---------TISLTKIYRQAQDSSIIQLAHQIRQGRLPQNLMERQPDRSFIPCKTQQVAQ 547 Query: 403 DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFM 462 ++ AL A N Q+L + +GP G+ LN+ ++ Sbjct: 548 VVEQVVGHALTR----------------GFDA-NTLQVLAPMYKGPAGITALNQLLQGLF 590 Query: 463 QQ---KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-------GQGTRVWF 512 K+ + + G V+ N++ G++NGDIG + V Sbjct: 591 NPPSRKKPQLEYFDQIFRLGDKVLQLVNNAEEGVYNGDIGKIVGVFSAQASNSGSEEVVV 650 Query: 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTR 572 A D + + S + + +VHKSQGSE+ L L ++ ++L+YTAVTR Sbjct: 651 AFDDDKELTYRRSDFDQLTLAYCCSVHKSQGSEYPLVILPLVDAYYRMLRQDLLYTAVTR 710 Query: 573 ARRRLSLYADERILSAAIATRTE-RRSGLAALFSSR 607 A+ L L D A++ + RR+ L L + Sbjct: 711 AQSSLVLVGDPDAYVQAVSQDRDLRRTNLKDLLEVK 746 >UniRef50_C7PDT2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PDT2_CHIPD Length = 601 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 203/611 (33%), Positives = 306/611 (50%), Gaps = 48/611 (7%) Query: 22 QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNW 81 QFA PA+ A LLS EGH+CL L++ A P + Sbjct: 10 QFAEYFQI---PALKPYAYLLSRKLSEGHICLHLNKPVEAAADLPAFCENMPTGSRT--- 63 Query: 82 EECLLASQAVSRGD-EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE-------VD 133 L V++G + P +L +RLYL R + E + ++ + Sbjct: 64 ---LQQIPLVAKGGNDSQPFVLYQERLYLQRYFRYETIFLQRIHQFLATEKEVLADRLKM 120 Query: 134 EALLAQTLDKLFPVS--------DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLL 185 + LF D +WQ AA + ++I+GGPGTGKTTTVAK+L Sbjct: 121 LETHRTFISNLFAAGPAFVADGGDPADWQLSAAVTGVLNNFTIITGGPGTGKTTTVAKIL 180 Query: 186 AALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA-STLHRLL 244 A L ++ LAAPTGKAAAR+ ESL QLP+ D + A ST+HRLL Sbjct: 181 AIL--YYLDPSLKVALAAPTGKAAARMAESLRNT--QLPVDDAITAQFRSLAPSTIHRLL 236 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 ++ S ++ NPL+ DV+++DE SMID+ + ++L+DA+ + R+I LGD+DQLASV Sbjct: 237 RSRKDSPYFVYNRENPLNYDVVILDECSMIDVALFAKLLDAVGNGTRLILLGDKDQLASV 296 Query: 305 EAGAVLGDICAYANA--GFTAERARQLSRLTGTHVPAG-----TGTEAASLRDSLCLLQK 357 EAG++ GD+C +A FT ER ++ + L L L++ Sbjct: 297 EAGSLFGDLCQAQDALNMFTKERLALINSFIPDERRKLPDSQIKANDPHPLFQHLVELRR 356 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 S+RF D GIG+ + AI D+ A+ + +++ + + +AGY Sbjct: 357 SHRFSGDKGIGKFSKAIIANDQVAIHGFLAPGADE---QVVIDETYSKELFAQFVAGYSA 413 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWY 477 ++ + +Q N+ ++LCA+REG G+ +N IE+ + KR I ++ +Y Sbjct: 414 FIV----EKDVRKALQLLNDLRVLCAIREGEEGLYAINRNIEKILHDKRLI--RVNAEFY 467 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 E RPV++ RN GLFNGD GI QG WF +G +K++ P L E ET +AM Sbjct: 468 ENRPVILTRNYYEHGLFNGDTGIIRTDEQGVLMAWFEDSNGELKAILPGYLTEAETVFAM 527 Query: 537 TVHKSQGSEFDHAALILPSQRT-PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE 595 T+HKSQGSEF +ILP + P++TREL+YT VTRA++++ + + +L E Sbjct: 528 TIHKSQGSEFKEVMVILPRAKDVPILTRELLYTGVTRAKQKVYVQSSAEVLLLTATRFVE 587 Query: 596 RRSGLAALFSS 606 R SG+ F+ Sbjct: 588 RASGIGQRFAD 598 >UniRef50_B7J7Z5 Helicase, RecD/TraA family n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J7Z5_ACIF2 Length = 711 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 131/600 (21%), Positives = 220/600 (36%), Gaps = 94/600 (15%) Query: 11 VEHKQLRPLDVQFAL-TVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLENNEASHPLL 68 V D + D V L +GHV P L + Sbjct: 198 VRGIGFSLADQAAGKLGIRADADYRVDAGIEHTLQTRTEDGHVWTPEPTLLGLCKELLGV 257 Query: 69 ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH 128 + E+ + Q + + + +R R+ E ++A ++ Sbjct: 258 SQ-----------EKIVARIQVMQEAQQIATELGAPNRFASVRLSRMEISLAAKIRSLSG 306 Query: 129 AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + Q A R++++++GGPG GKTT LL Sbjct: 307 PAPKKTM-------RFPAGFVPDPTQIEALNQISDRKLAILAGGPGMGKTT----LLKTC 355 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 Q A R+ L APTG+AA R+ E+ G +A T+HRLL + Sbjct: 356 AQSAVASGMRVALCAPTGRAAKRMNEATGM-----------------EAKTIHRLLEMKR 398 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 G + NP+ D ++VDE SM+D+ + +L DA+P ARV+ +GD DQL SV G Sbjct: 399 GGL-AERNRDNPIEADWIIVDEVSMLDMELAWKLFDAIPARARVLLVGDPDQLPSVGPGQ 457 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 VL D+ A + L K +R + SGI Sbjct: 458 VLADLIACGKVT-------------------------------VARLSKIFRQQAGSGIP 486 Query: 369 QLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP 428 +A + +G + + + + E+ A++ + L Sbjct: 487 VMATQVIQGVVPNLDPDSSDCPFVDAECIGEESEEATAVVVRRIVQESEKL--------- 537 Query: 429 DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND 488 + Q L +R GP G LN+ + + R+ G V+ RN+ Sbjct: 538 ------GSRMQALAPMRNGPLGTLKLNQALREAFNPDAGQPHRG--RFRLGDWVIQTRNN 589 Query: 489 SALGLFNGDIGIALDRGQG-TRVWFAMPDGNIKSV-QPSRLPEHETTWAMTVHKSQGSEF 546 L ++NGD+G + +G + + + L + + + +T+HKSQG +F Sbjct: 590 YDLDVYNGDLGTVVAIEEGDEQAVVVDFEDRVVRYEDNEDLRDLDHAYCLTIHKSQGGQF 649 Query: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALF 604 A++ + ++ R L+YT +TRA + L L + +R L A +R + LA Sbjct: 650 PGVAMVATTAHFVMLKRNLLYTGMTRAEKHLLLISTKRALQIACKKSGIEKRDTLLAQRI 709 >UniRef50_D1BM66 Helicase, RecD/TraA family n=3 Tax=Veillonella RepID=D1BM66_VEIPT Length = 717 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 136/606 (22%), Positives = 239/606 (39%), Gaps = 95/606 (15%) Query: 15 QLRPLDVQFALTVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLATC 71 D A + + L A L L +GH CLP+ +L Sbjct: 191 LFGTADT-LAEHLGINGSDTRRLEAGLEWILRSLDNQGHTCLPVDQLIGRLDDLL----- 244 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE 131 +++ ++ N+ E LL A+ + +Y M+ +E + E + Sbjct: 245 QTDVDDIANFIESLLEQGALYSTYYEDIL-----YIYPPEMYVSEVEGVHYTREFLLQAD 299 Query: 132 VDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 ++ ++K + + QK A ++ + S+I+ G T ++ AL+ Sbjct: 300 PIALDISSFIEKFERDNYITFGDAQKEAIQLSFFEKFSLIT----GGPGTGKTTIIKALV 355 Query: 190 QMADGERC-RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG--A 246 + RI L APTG+AA RLTE+ +A+T+HRLL Sbjct: 356 KGFQLGGLGRIILCAPTGRAAKRLTEAT-----------------EFEATTIHRLLVPVQ 398 Query: 247 QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEA 306 S + +PL +DV+++DEASM+++ + L+ A+P A VI +GD DQL + A Sbjct: 399 GSDSYDFTKNEDDPLDIDVIIIDEASMLNVRLFYSLMAAIPKEAHVIIVGDVDQLPPIGA 458 Query: 307 GAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSG 366 G VL D+ +T L + YR S + Sbjct: 459 GFVLKDLLDSDCVPYT-------------------------------RLNQIYRQSSGNT 487 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 I + A AINRG+ ++ V ++F+ I + Y M++ + Y R + ++ Sbjct: 488 IVESAYAINRGEMPNLEGV-SEEFSFIP------VKSYDMMMKAIIDVYKREQETIEDEL 540 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVM 483 + Q++ +R G G +++ ++Q + + R + G V+ Sbjct: 541 ----------DIQIISPMRRGEAGSTLISQYVQQAVNPPDSYKGEVRVNGITYRVGDKVI 590 Query: 484 IARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 ND L +FNG+IG+ T + + +A+TVHKSQG Sbjct: 591 QILNDYELEVFNGEIGVIYAIT-RTDICIRFIH-KEVRLPIDEAHMIMPAYAITVHKSQG 648 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA--TRTERRSGLA 601 SE+ + + ++ R L+YTAVTRA+R++ + + A+ ER + Sbjct: 649 SEYGVVIIPFVPRYGGMLQRNLLYTAVTRAKRKVIIVGTTSAVERAVRTVNADERYTLFK 708 Query: 602 ALFSSR 607 R Sbjct: 709 ERLQGR 714 >UniRef50_C8PAU3 Exodeoxyribonuclease V alpha subunit n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PAU3_9LACO Length = 780 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 137/625 (21%), Positives = 244/625 (39%), Gaps = 104/625 (16%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAAL----LSHDAGEGHVCLPLSRLE 59 L+ + D A + + L AL L +G+ L Sbjct: 186 PYALIAETRGYGFKIADS-IANKLGFKADDSRRLKGALMQVLLDSALKDGNTYL------ 238 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 L+ + EL ++ L + V+ + +++ D++ L M+ E+ + Sbjct: 239 -------LMDKWLENTSELLYIDDFDLLANEVNNLKKDNKVVIFDDKVSLTNMYTIEKDI 291 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSD------EINWQKVAAAVALTRRISVISGGP 173 A ++ + + D L L+ + + QK A AL IS+++GGP Sbjct: 292 ANDLKRISDSNKKDIPYLDDDLNSAIKHVEQKFDISYDDTQKKAIKTALNNSISILTGGP 351 Query: 174 GTGKTTTVAKLLAALIQMADGER-------CRIRLAAPTGKAAARLTESLGKALRQLPLT 226 GTGKTT + +LA L ++ LAAPTG+AA R++E G Sbjct: 352 GTGKTTIIRGILATLQEIEKIPNDVLYTDDPPFLLAAPTGRAAKRMSELTGI-------- 403 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 DA T+HRLLG G L N L+ ++L++DE SM+D+ + L+ ++ Sbjct: 404 ---------DAKTIHRLLGL--GISDLNQENMNELNGEILIIDEMSMVDMFLFKNLVSSI 452 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 ++F+GD+DQL SV G + D+ A + Sbjct: 453 FQLKHIVFVGDKDQLPSVGPGNIFSDLIASSAFP-------------------------- 486 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L +R DS I LA IN+ + A +++ I + + Sbjct: 487 -----TTKLSMIHRQSDDSSIVDLAHKINQNNAQANIFTKTPNYSFISCKPNSIADAIEK 541 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 +++ AL ++ Q+L A+ G G+ LN+ ++ M + Sbjct: 542 IVDIALEK-----------------GFCADDIQVLTAMYNGVSGINSLNDLLQNIMNPAK 584 Query: 467 KIHRHPHSR---WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV--WFAMPDGNIKS 521 + + G V+ +N+ ++NG IG + + D Sbjct: 585 IDSKKVEVHNEFFRIGDRVLQLQNNPEKEIYNGQIGKVVGIDDSQKSAKLIVRFDDREVM 644 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 + + L + +A+T+HKSQGSEF L L Q ++ + L+YT +TRA++ L + Sbjct: 645 LTSNDLSDLTRAYAITIHKSQGSEFPLVILALTMQNYIMLKKNLLYTGITRAQQNLVMIG 704 Query: 582 DERILSAAIATR-TERRSGLAALFS 605 +E+ A+ T +R++ L + Sbjct: 705 EEQAYQMALKTEGNDRQTDLCSKIQ 729 >UniRef50_C1ACJ0 Exodeoxyribonuclease V alpha subunit n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ACJ0_GEMAT Length = 579 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 215/609 (35%), Positives = 296/609 (48%), Gaps = 45/609 (7%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 +L EA +R VQ T A + A L+S + G G+ C+ L + Sbjct: 1 MSRLDEAFADLVVRMAAVQAGTTEALLAREVLANTALLVSAERGMGNSCVD---LAAHAG 57 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT-----PMILCGDRLYLNRMWCNERT 118 L + + L +W + L AS +R +L G RLYL R E Sbjct: 58 RIITLGSRTVQFPALDDWGDVLRASGVCARVPHTQDANVPLFVLEGTRLYLLRYHRAEVR 117 Query: 119 VARFFNEVNHAI-EVDEALLAQTLDKLFPVSDEI-NWQKVAAAVALTRRISVISGGPGTG 176 +A V+ LFP D + +WQ AAA AL + ++GGPGT Sbjct: 118 LAEAIVHRAQQATPVEALPDTPRFHALFPAVDGVVDWQARAAATALASPLVFVTGGPGT- 176 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 T + + LAAPTG+AAARL+E++G A + L + Sbjct: 177 -GKTTVAARLLALLLHRDPTLTFALAAPTGRAAARLSEAIGAAALRDALHELAPSLPGVS 235 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 TLHRLLG +QR RHHA PL DV++VDEASMID+ MM L AL AR+I LG Sbjct: 236 GKTLHRLLGYHTATQRFRHHAQRPLAEDVVIVDEASMIDVLMMDALFAALKPSARLIVLG 295 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D DQLASV+ G VLGD+ A+ +++++R S+ L Sbjct: 296 DPDQLASVDTGFVLGDVTRAAHDAV----------------------KSSAIRRSVVRLA 333 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD-FTDIEKRLLQSGEDYIAMLEEALAGY 415 S+RFG GIG LA A G+ Q TD+ +L +E LA Sbjct: 334 YSWRFGQQVGIGLLAEATRVGESQQAMRALQDTALTDVAWQLPH------RSAQELLAPV 387 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 ++ A P + A +++LCALR+GP GV GLN E ++Q++ + Sbjct: 388 EPHVQAFLATDTPVAALAALARFRVLCALRDGPGGVTGLNALTEGWLQRQGRAVMG---- 443 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 WY+ RPV++ ND+A L+NGD+G+ L V F DG ++S PS+LP HET WA Sbjct: 444 WYDHRPVLVTANDAATQLYNGDVGVTLAIDGVPMVHFPASDGGVRSFMPSQLPAHETAWA 503 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE 595 MTVHKSQGSEFDH ++LP + V+TREL+YTAVTRARR +++ +R++ AAI Sbjct: 504 MTVHKSQGSEFDHVLVVLPEADSRVLTRELLYTAVTRARRSVTISGSDRMIEAAIHRSVV 563 Query: 596 RRSGLAALF 604 R SGL Sbjct: 564 RGSGLTDRL 572 >UniRef50_Q310C7 ATP-dependent DNA helicase, RecD/TraA family n=4 Tax=Deltaproteobacteria RepID=Q310C7_DESDG Length = 698 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 134/621 (21%), Positives = 234/621 (37%), Gaps = 92/621 (14%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 L+ + + +D A + + GH + L + Sbjct: 141 PYILIREIRGFGFKKVDK-IARKLGTPKDHTPRIRAGLNFCVREALDNGHCWIEYEDLVD 199 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 + L+ + +++ + L+ QA++ + + L + ER +A Sbjct: 200 QA-NLLLVMDALDSRVRIESALDALIEEQALACDSHGGRFV-----VALPEIVRMERELA 253 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFP--VSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 F + +++ + LD L S Q A AL IS+ISGG G+GK+ Sbjct: 254 LLFGQAETPNPHFQSV--KKLDALIRRCASTLNEKQLDAVRSALQHSISLISGGAGSGKS 311 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T ++ + + + + LAAPTGKAA RL E G++ + Sbjct: 312 YT----ISVINTICEESDLEVVLAAPTGKAAKRLEEVSGRS-----------------GT 350 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP-DHARVIFLGD 297 T+HRLLG + NP+ DVLVVDE SM+D+P+ L +A+ V+ +GD Sbjct: 351 TIHRLLGY--DGKGFSRSKENPIDADVLVVDEFSMVDVPLAWHLFEAVDLSRTTVLLVGD 408 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 +QL V G +L D+ +L K Sbjct: 409 HNQLPPVGPGNILRDLIQTRAIP-------------------------------TVILDK 437 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 R + + A+ +G+ D + + +A Sbjct: 438 VVRQA--GVLKENCTAVLKGEVRKTSEASVSGCRDWY---------LVDQFTDPMAARSF 486 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK------RKIHRH 471 L+L Q R + L + Q+L +GP G LNE +++ +Q+K + Sbjct: 487 LLELFQERLDT-LGFDIIKDVQVLTPTHKGPLGTKELNEELQRLIQRKLWNTEVPPVAMG 545 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPS--RLPE 529 + + + V+ RN+ L + NG IG +D + DG ++ L + Sbjct: 546 RRAPFLKHDKVIQTRNNYDLNVMNGAIGYVVDVLANGTL-VIDFDGMPVELEKGSPDLQD 604 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 + +A+T+HK+QGSEF A +++ + + R L+YT VTRARR + D + Sbjct: 605 LQLAYALTIHKTQGSEFPCAVVVIHKAHSFMHHRNLLYTGVTRARRTAIVLGDHWGIQNC 664 Query: 590 IAT--RTERRSGLAALFSSRE 608 +RR+ L + + Sbjct: 665 AKRCQVDDRRTFLPLFLDAAQ 685 >UniRef50_C1RHS1 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Actinomycetales RepID=C1RHS1_9CELL Length = 1794 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 206/621 (33%), Positives = 306/621 (49%), Gaps = 31/621 (4%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE 62 L + L DV+ A + ++ P V LAAAL G VC+ L+ + Sbjct: 1177 LLTTFADAGVLTSADVRVAERLGDLTGEDDPTVHLAAALAVRAVRAGSVCVDLADAPSLV 1236 Query: 63 AS------HPLLATCVSEIGELQNWEECLLASQAVSRGDE---PTPMILCGDRLYLNRMW 113 A L + W + S V+ G + P+ R+YL+R W Sbjct: 1237 AEGSPDDPDAPLPAGTLPWPDTAAWTAAVRGSGMVADGVDGPADRPVRWVDGRVYLDRYW 1296 Query: 114 CNERTVARF-FNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGG 172 +E+ V R + ++VD+ L + + FP + + Q+VAAA A R++V++GG Sbjct: 1297 RDEQVVRRDVDARLTSLLDVDDDALRRAVHARFPRAQDA-RQRVAAATAAVSRLTVLTGG 1355 Query: 173 PGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL------PLT 226 PGTGKTTTVA+L+A L +A G RI LAAPTGKAA RL E++ L +L Sbjct: 1356 PGTGKTTTVARLVAVLRDVA-GPGLRIALAAPTGKAATRLQEAVNAELARLDDAAVGGTV 1414 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 P AST+HRLLG +P S R H + L DV+V+DEASM+ LP+++R++DAL Sbjct: 1415 AAPGAARPLTASTIHRLLGWRPSSTRFAHDHAHRLPHDVVVLDEASMVSLPLLARVLDAL 1474 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL---SRLTGTHVPAGTGT 343 AR++ +GD DQLASVE GAVLGD+ A + GT A Sbjct: 1475 RPDARLVLVGDPDQLASVEVGAVLGDLVARPTRSGPLPARLAALLPDDVPGTATSADDTR 1534 Query: 344 EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD---IEKRLLQS 400 +AA+L + L ++RFG + + +LA A+ RGD A + + +E Sbjct: 1535 DAAALHGGVVRLVVTHRFGHE--LAELADAVRRGDADATLALLRAGGAHASLVEPAAEVP 1592 Query: 401 GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQ 460 ED + L ++ G L + ++A ++LL A R GP GVA ++ Sbjct: 1593 TEDEVPGLRGDVSATGARLVAAARAGDTAGALEALGVHRLLLAHRRGPAGVARWAALAQR 1652 Query: 461 FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIK 520 ++ ++ + GRP+++ ND GL NGDIG+ + G G V + Sbjct: 1653 WV--EKTVGDLQPGPLSLGRPLLVTVNDRTTGLSNGDIGVLVSDGAGGVVAAFGESHAPR 1710 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 V+P RLP ET AMTVH++QGS+F ++LP +P++TREL+YTAVTRA+ + + Sbjct: 1711 LVRPHRLPAVETVHAMTVHRAQGSQFTFVTVLLPPASSPLLTRELLYTAVTRAQEHVRVV 1770 Query: 581 ADERILSAAIATRTERRSGLA 601 + A+ R SGL Sbjct: 1771 GSAEAVRRAVERPVRRASGLR 1791 >UniRef50_C3RKU1 Exodeoxyribonuclease subunit V alpha n=4 Tax=Bacteria RepID=C3RKU1_9MOLU Length = 731 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 128/630 (20%), Positives = 229/630 (36%), Gaps = 108/630 (17%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAG--EGHVCLPLSRL 58 QL+E ++ + D + D + G G L + Sbjct: 178 NNPYQLVEDIDGIGFKTADELALKTGGTLDNPNRIKAGIIYSIKQYGFNTGSTYCYLDEI 237 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + + E + ++ + + +I GD+ Y M E+ Sbjct: 238 KIMFSKIIYN-------------IEEVSFNEYLDELIDEGLIIQRGDKYYYFEMDEAEKN 284 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGG 172 +A + + DE + +++L ++ QK A L +++ Sbjct: 285 IAEYLKIRINKP--DELFDEKEVERLLTNYEKTQGICYAAKQKEALNYFLKSSCMILT-- 340 Query: 173 PGTGKTTTVAKLLAALIQMADG--ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 G T ++ AL+++ RI L APTG+AA RLTE G Sbjct: 341 --GGPGTGKTTIVQALLKVYSVLYPDDRIGLVAPTGRAAKRLTELTGIY----------- 387 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 A T+HRLL S + NPL LDVL++DE SM+D ++S+L +A Sbjct: 388 ------ACTIHRLLKWDLHSNTFAMNKSNPLDLDVLIIDEFSMVDCLLLSKLFEAGRGIN 441 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 +V+F+GD QL SV G +L D+ Sbjct: 442 KVLFIGDYHQLPSVAPGNILQDLMEAGV-------------------------------- 469 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ-QDFTDIEKRLLQSGEDYIAMLE 409 L + +R DSGI QLA I + + Q +D ++ +++ Sbjct: 470 KTIELDEIFRQAKDSGIIQLAHHIIHNEIENMDLFEQYRDINFFPCINYDVVKNVKIIVK 529 Query: 410 EALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI- 468 +A+ N+ Q+L + +G G+ LN+ ++ + Sbjct: 530 KAIDE-----------------GYDTNDIQVLVPMYQGVAGIDALNDALQDVFNPIDEFN 572 Query: 469 --HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV------WFAMPDGNIK 520 ++ + G ++ +N +FNGDIG ++ + DGN Sbjct: 573 DSYQIGRKEYRVGDKILQLKNRPDDDVFNGDIGTLVEICRKDNFEYLQDTLIVDFDGNFV 632 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 + + M++HKSQG+EF + + S ++ R L+YTA+TRA++ L + Sbjct: 633 EYTSNTFNTITHAYCMSIHKSQGNEFKIVIMAVLSDYYIMLRRNLLYTAITRAKQSLFIL 692 Query: 581 ADERILSAAIAT--RTERRSGLAALFSSRE 608 + +A + R++ L + F + E Sbjct: 693 GSSKAFMHGLANYQDSRRKTSLKSRFKTIE 722 >UniRef50_D1B8Y6 Helicase, RecD/TraA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8Y6_THEAS Length = 715 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 141/615 (22%), Positives = 228/615 (37%), Gaps = 87/615 (14%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAAL-LSHDAGEGHVCLPLSRLE 59 QL V D + + + D + + EGH LP L Sbjct: 178 SNPYQLAYDVAGIGFVTADRIAQRVGICRDAPERLDAGILFSMRRAVEEGHSMLPWDELL 237 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + + V + EL L A + +YL + E Sbjct: 238 QRSRRLLAVDSGVEDRLELLCTLGMLEAEELGGL-----------RCVYLPGLRRAEAAS 286 Query: 120 ARFFNEVNHAIEVDEALLAQ----TLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 A ++ + + L+ F + E Q+ A AL+ RI VI+ Sbjct: 287 AGAVRDMAASSGARLGWELEGMITALEGQFGIRLEEP-QRRAVKGALSHRIFVIT----G 341 Query: 176 GKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPE 235 G T LL +++ R+ LAAPTG+AA R+ E Sbjct: 342 GPGTGKTTLLRFTVRLCQMMGLRVLLAAPTGRAAKRMAEVTR-----------------V 384 Query: 236 DASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 +A TLHR L P S R PL DV++VDE SM+DLPM RL+ + + A ++ + Sbjct: 385 EAYTLHRALEYDPRSNRFGRGRSRPLEADVVIVDEFSMVDLPMFHRLLSGIGEDASLVLV 444 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD +QL S+ G+VL D+ + + L Sbjct: 445 GDSNQLPSIGPGSVLKDLISSGSVPK-------------------------------VEL 473 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGY 415 ++ +R S I + + I G +E L G D + E+ + Sbjct: 474 KEIFRQAQRSLIIRNSYRILEGGT-------------LELPPLSQGLDVAFVEEDDPSLA 520 Query: 416 GRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 + L P + + Q+L + +G G L R+++ + + R Sbjct: 521 AEAVVDLVGYEIPRCTGLSPWDVQVLTPMHKGEAGARNLCLRLQEVLNPSGERLRRGEGG 580 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWA 535 + G V+ +ND L ++NGDIG+ GQ + +G ++ +A Sbjct: 581 FRRGDKVIQLKNDYDLEIYNGDIGVV--EGQVDQGLLVDFEGRRVQIRREAEVNLALAYA 638 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-- 593 +T+HKSQGSE+ + L Q ++ R L+YTA+TRA+R L R + A++T+ Sbjct: 639 LTIHKSQGSEYPAVVVPLLDQHFVMLKRNLLYTALTRAKRLAVLVGSRRAIERAVSTQEG 698 Query: 594 TERRSGLAALFSSRE 608 R L + RE Sbjct: 699 NARYGALRWRLAKRE 713 >UniRef50_A6P2F0 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P2F0_9BACE Length = 726 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 138/613 (22%), Positives = 216/613 (35%), Gaps = 105/613 (17%) Query: 12 EHKQLRPLD-VQFALTVAGDEHPAVTLAAALLSHDAG-EGHVCLPLSRLENNEASHPLLA 69 + D + A +A + + A +GH+C+ + Sbjct: 197 DQIDFETADQLAQANGIARNAPERLDAGLLYTLKLAEHDGHLCMHKEAFVRKAVNLLHAP 256 Query: 70 TCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA 129 + + +E + +IL D +Y M E VA ++ Sbjct: 257 QVTWKGVAQRAFE-----------MIQSGRLILYNDYVYRPIMARAEEEVAAGICDMLKR 305 Query: 130 ------IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAK 183 ++D+ + Q + F + Q+ A ALT I +ISGGPGTGK + Sbjct: 306 DKMPYMGDLDDEIDRQQAEMGFTFAQ---EQRHAIRTALTSPICIISGGPGTGKASIQRA 362 Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 +L ++ + APTG+AA R+ +S G AST+H+ Sbjct: 363 ILNIYKKVFPDSD--VVCCAPTGRAARRMEQSTG-----------------YPASTIHKA 403 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 L G + L D+++VDE SM+D+ L +ALP + R+I +GD DQL S Sbjct: 404 LNLTAGELH-KLRELQLLEADLVLVDEVSMMDMVTTWCLFNALPPNCRLILVGDADQLPS 462 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V GAVL ++ A +L K +R Sbjct: 463 VGPGAVLNELLASGRLPA-------------------------------VILDKVFRQSE 491 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 S + + A I G L G+D+ +YL L Sbjct: 492 GSLVAENAQRIRHG-----------------VSELDFGDDFQFWTSADEMQSAQYLMRLY 534 Query: 424 ARAEPDLIIQAFNEYQLLCALR-EGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEG 479 R + + LL R + GV LN + + + G Sbjct: 535 KREVARFGV---DNVALLTPFRKKSETGVYSLNAALHDEVNPAVPGKAEIEVGQRVLRVG 591 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGT---RVWFAMPDGNIKSV-QPSRLPEHETTWA 535 VM +N NGDIG QG V D + + L + E +A Sbjct: 592 DKVMQMKNRDFA--SNGDIGYICTSTQGEDGLLVEVDFGDDRVVAYEDIEALRQLELAYA 649 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR-- 593 T+HKSQGSE+D + + ++ R L YTA TRA++R+ + D + AI T Sbjct: 650 TTIHKSQGSEYDAVLINIQDMHGKMLNRALFYTAETRAKKRVIIVGDWDAVVRAIQTADT 709 Query: 594 TERRSGLAALFSS 606 R + LA + Sbjct: 710 KRRHTMLAMRINE 722 >UniRef50_C0VHS0 Exonuclease V alpha subunit n=7 Tax=Acinetobacter RepID=C0VHS0_9GAMM Length = 601 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 174/583 (29%), Positives = 273/583 (46%), Gaps = 75/583 (12%) Query: 56 SRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 + + L ++ +Q LA + + P + L L R W Sbjct: 57 AHVLQQLIEASLNGDSCIQVDLVQLEALGDLAIPSEKAATQVAPCVYDQQGLALYRYWQL 116 Query: 116 ERTVARFFNEVNHA--IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGP 173 E+ +A+ + +D + L+ F Q+ A + L + +S+I+GGP Sbjct: 117 EQRLAQQICRLKRQMTPVIDISEYESLLEDEF--------QQAALKMVLQQWVSIITGGP 168 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQ---LPLTDEQK 230 GTGKT T+A+++AAL QM RI +AAPTGKAA R+ E+L + + Sbjct: 169 GTGKTYTLARIIAALNQM--IPDIRIAMAAPTGKAAQRMQEALQNSFNDPKLIASGLVTD 226 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 + + TLHRLLG Q R + PL DV+VVDEASM+DL + + L +A+PD Sbjct: 227 ELRNQSTQTLHRLLGM-GNRQIPRFNVKQPLPYDVIVVDEASMLDLNLATALFEAVPDSC 285 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 R+I LGD +QLASV+ G+VL D+ L + Sbjct: 286 RIILLGDANQLASVDVGSVLADLQQ-----------------------------VEGLAE 316 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ--------------------QDF 390 + LQ S RF + IGQLA I ++ + Q D Sbjct: 317 NRVQLQNSRRFSDKAKIGQLARFIQAQQASSESVLTQLEHEIVKPAPLQEMSLSKEMPDA 376 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL-------IIQAFNEYQLLCA 443 +E Q + ++ + G+ Y ++L++ D +I+ F++Y++L A Sbjct: 377 IQLEYLPEQLDIEIEQYQQKLMYGFNDYAEILKSYLHADQPEQYIQDVIRVFDDYRILAA 436 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 ++ G G+ LN E+++ Q+ + + + WY GRPVM+ ND LG+ NGDIGI Sbjct: 437 VKHGALGIEQLNRYAERWLNQQ--LKQIAVAEWYVGRPVMMTYNDYQLGISNGDIGICFK 494 Query: 504 RGQGTRVWFAMPDGNIKSVQPSRLP-EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVT 562 + + K + RLP +T +A+T+HKSQGSEF H A++L + +++ Sbjct: 495 HRTQAQQFEVFFPSLNKWIAAHRLPRNMQTAFALTIHKSQGSEFTHTAIVLDANAKKLLS 554 Query: 563 RELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 +EL+YTAVTRA++ ++L AD L A+ RT RRSGL + Sbjct: 555 QELIYTAVTRAKKVVTLLADPNALLQALTVRTVRRSGLVQKIN 597 >UniRef50_Q6MFB5 Putative exodeoxyribonuclease V alpha chain recD n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MFB5_PARUW Length = 622 Score = 365 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 165/633 (26%), Positives = 268/633 (42%), Gaps = 80/633 (12%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAGDE--HPAVTLAAALLSHDAGEGHVCLPL-------- 55 + + + QL L+ L + D+ + + L L A EGH+C+ + Sbjct: 36 LVNQLLSKNQLSYLNYLLTLEIIKDQWINQNLVLFICHLLMAAQEGHLCVEIRNQTLFPT 95 Query: 56 -SRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGD-------EPTPMILCGDRL 107 +L NEA+ PL + + + V+ D TP+ + Sbjct: 96 VKQLWTNEAAAPLSNEELENLTHSILQGSQNIPVNFVTAMDSLENSVYPNTPICMHKGNF 155 Query: 108 YLNRMWCNERTVARFFN---EVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTR 164 YL + W E + N + + +E++ +L Q L++ + Q A Sbjct: 156 YLQKHWVLETVFLKNLNKHLQTSPTLELNRVVLEQHLNECVLKKKLLLEQAQAILTGCLS 215 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCR---IRLAAPTGKAAARLTESLGKALR 221 +S+I+GGPGTGKT T + + + + I LAAPTGKAAA L +SL Sbjct: 216 SLSLITGGPGTGKTFTAGRFIQIYWDSLKECQKKNCQIALAAPTGKAAANLQKSLSLVTA 275 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 QL P A TLH+LLG R R+ +G L D+++VDE+SMID+ MM+ Sbjct: 276 QLKDFP------PLKAKTLHQLLGIN---NRSRNESGIRLAADLIIVDESSMIDVKMMAY 326 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L +AL +R+I LGD+ QL SVEAG++ D+ Sbjct: 327 LFEALKKGSRLILLGDQHQLPSVEAGSLFADLTKLKT----------------------- 363 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSG 401 + L+ R S I LA IN+G ++ + RL S Sbjct: 364 -------KIPCTELKVCLR-TELSSIVSLAHYINQGKGQETLSMLNETQIAGISRLNLSP 415 Query: 402 EDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 + A +E + + L + I++ FN ++L +R+G FGV +N+ I Sbjct: 416 DRREAQ-KEFVQHVMNHFPLSIKVHDNQKILELFNTIRILSPMRKGYFGVDSINQLIWNH 474 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD------RGQGTRVWFAMP 515 + Q + P++I ND LFNG+ G+ + F Sbjct: 475 VSQIKLSPGWLAI------PIIIVTNDYKQNLFNGETGVLIRKLPLKSITSEDYALFPSK 528 Query: 516 D--GNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRA 573 D N++ + LP++E + ++VHKSQGSEF+ L+LP + + RE+ YT VTRA Sbjct: 529 DEGENMRCLPACLLPKYELAYCLSVHKSQGSEFERVILMLP-EGSECFGREVFYTGVTRA 587 Query: 574 RRRLSLYADERILSAAIATRTERRSGLAALFSS 606 R+ + ++ + + I+ ++ R SG+ Sbjct: 588 RKHIEVWGTDFTIEKTISQQSFRLSGIQTRLEK 620 >UniRef50_B4RTM2 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RTM2_ALTMD Length = 731 Score = 364 bits (934), Expect = 6e-99, Method: Composition-based stats. Identities = 186/702 (26%), Positives = 285/702 (40%), Gaps = 125/702 (17%) Query: 23 FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLA--------TCVSE 74 F ++ ++ LS+ GH C+ L + +A + S Sbjct: 31 FIEQLSQEDAFIWAGILVYLSYMQRNGHSCIYLKDVAGTTLFEDAVALENNASAPSAKSS 90 Query: 75 IGELQNWEECLLASQAVSRGDEPTP----------------------------MILCGDR 106 E ++ + E P + R Sbjct: 91 ASEQNMALTQVMEPKVQQNKGEKAPKTGFEVPELTPLLKIVKSALGNEQLAKLFVYDNGR 150 Query: 107 LYLNRMWCNERTVARFFNEVNHAIEVDEAL---LAQTLDKLFPVS--DEINWQKVAAAVA 161 LY R + E+ VAR E + + + + +FP + D+ +WQ++A A + Sbjct: 151 LYSRRYYEFEQEVARSVVERAVLHPLHDDVADNVKALWPAIFPTTTTDQQDWQQIAVAKS 210 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 L +R VI+GGPGTGKT TV +LL AL A E +I LAAPTGKA R+TES+ ++ Sbjct: 211 LMQRFCVINGGPGTGKTYTVLRLLLAL--QACDEELKIVLAAPTGKAQQRMTESIMNSVE 268 Query: 222 QL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMM 279 L ++D +P +A TLHRLLG + +++ N L DVL+VDEASM+DL +M Sbjct: 269 GLRGKVSDTALDSVPTEAVTLHRLLGLREHGVATKYNQHNKLSADVLIVDEASMVDLALM 328 Query: 280 SRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC--------------AYANAGFTAER 325 +R++ ALPDHAR+ F+GD DQL +VE G VL + A Sbjct: 329 TRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSDETALDFSHENPLAGGENSSNERT 388 Query: 326 ARQLSRLTGTHVPAGTGTEA-----ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 + H+ + + LQ RF + ++A AI RGD Sbjct: 389 LGGVPSSMRQHIATLCPHLPLLPVNEQAKSYVATLQAPQRFKGQ--VARVATAIQRGDAN 446 Query: 381 AVKTVF-----------------QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 D I + + + E+ G L + Sbjct: 447 GALAAIAQKNSGSKQGDNASQPKSADEKSINTNSRSRLQPGVHLWPESQLGGRELQQLAK 506 Query: 424 -------ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRW 476 + + N + L +R+G GV GLN + ++ K R + Sbjct: 507 ESFLPLFEAQSAEEALNRLNYVRWLTPIRKGAMGVEGLNNLVFDAIKHK---IRRREGHF 563 Query: 477 YEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMP---DGN-------------- 518 Y+G+P+MI +N L NG++G+ G WF +G Sbjct: 564 YQGQPIMIVKNHHPQRLSNGEVGVIWPDSTGKLYAWFYQDTYVEGQQAGKSLNDSSNNSS 623 Query: 519 ----------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS----QRTPVVTRE 564 ++S+ SR+P+ ET +AMT+HKSQGSEF+H LILP + + R Sbjct: 624 AQNLGQQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNHVVLILPKPESEKAANLFHRG 683 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 LVYT +TRA+ + +D S +AT +R SGL++ S Sbjct: 684 LVYTGLTRAKDGCLIISDSNTFSGMVATVDKRYSGLSSAISR 725 >UniRef50_A3ETY4 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ETY4_9BACT Length = 575 Score = 364 bits (934), Expect = 6e-99, Method: Composition-based stats. Identities = 163/579 (28%), Positives = 255/579 (44%), Gaps = 57/579 (9%) Query: 28 AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLA 87 + +E V L A+LS +GHV + L +++ HP + + + + + WE L A Sbjct: 41 SEEETLLVLLMVAILSRARRDGHVLIDLDEVQH----HPWVLSWKNRLPDPSRWEAILDA 96 Query: 88 SQAVSRGDE-PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP 146 V+ E P+P + LY + ++ E +AR E + Q + +L Sbjct: 97 HPLVTGPGEGPSPFLYANRCLYFSALYRQESFLARSIRERLSLGAREPDARDQEILRLA- 155 Query: 147 VSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 S + ++ AL R +++GGPGTGKT T A++L + +A PTG Sbjct: 156 -SGGVEDRRRLLEGALFRPFFLLTGGPGTGKTYTSAEILKVWKILRPEAHL--VVATPTG 212 Query: 207 KAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVL 266 KAA R E+L D TLHRLLG PG PL D++ Sbjct: 213 KAARRFREAL--------------SLPEVDVLTLHRLLGISPGGASP--GEDRPLVQDLV 256 Query: 267 VVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERA 326 +VDE SM+DL +M+RL AL VI +GD DQL+SV G+V GD+ + Sbjct: 257 LVDECSMVDLSLMARLFRALSPETSVILVGDPDQLSSVGPGSVFGDLALAMSVEQKTR-- 314 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF 386 + S +L ++YR S G+LA + +GD V + Sbjct: 315 -------------------PEISRSFQVLTRNYRQDSWDDFGRLAEGVRQGDAGTVLEIL 355 Query: 387 QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALRE 446 R ++ I + + L + + + ++ LL A+RE Sbjct: 356 ASGEKSGPIRWIEPRTGAIREIGKTL---IEAWLPVVESRSAEEAWEKLGQFALLGAVRE 412 Query: 447 GPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRG 505 GP G +N + + + R PV++ N G NGD G+ ++ Sbjct: 413 GPLGTRTVNRLLRNHFENRSGCTRRFV-------PVIVTENSVESGFMNGDPGLLEMEGN 465 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTREL 565 R +F P ++ P +P E +A+TVHKSQGSEFDH ++L S+ +++R L Sbjct: 466 TAIRAFFQGPGQTMRVASPLLMPAWEEAFALTVHKSQGSEFDHVTVLLGSESNALLSRSL 525 Query: 566 VYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 +YTAVTRAR+RL++YA +L A++ R +GL Sbjct: 526 LYTAVTRARKRLTVYASRGVLREALSNAGGRSTGLFQAL 564 >UniRef50_UPI0001AEC2FF exodeoxyribonuclease V, alpha subunit n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC2FF Length = 735 Score = 363 bits (932), Expect = 9e-99, Method: Composition-based stats. Identities = 187/712 (26%), Positives = 291/712 (40%), Gaps = 128/712 (17%) Query: 15 QLRPLDVQFAL---TVAGDEHPAVTLAA---ALLSHDAGEGHVCLPLSRLENNEASHPLL 68 + +D A + E + A A LS+ GH C+ L + ++ Sbjct: 17 GIEAIDKFVAKEFGFIDELEQEEQFIWAGILAYLSYMQRNGHSCIYLKDIAGTTLFKEVV 76 Query: 69 ATC---------------------------------VSEIGELQNWEECLLASQAVSRGD 95 A + + Q + A+S Sbjct: 77 AEQEAVLAAETNVHSNNGAVGASKSPVEQTEQEKAPKAGVDVPQLTPLLRIVKSALSNEQ 136 Query: 96 EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEAL---LAQTLDKLFPV--SDE 150 + +LY R + E+ VAR + + + + Q +FP +D Sbjct: 137 VAQLFVYSNGKLYSRRYYEFEQEVARNVVKRAALTPLSDEASEKVKQLWPAIFPTETTDR 196 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 +WQ++A A +L +R VI+GGPGTGKT TV +LL AL A E +I LAAPTGKA Sbjct: 197 QDWQQIAVAKSLMQRFCVINGGPGTGKTYTVLRLLLAL--QACDENLKIVLAAPTGKAQQ 254 Query: 211 RLTESLGKALRQL--PLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268 R+TES+ ++ L L D +P DA TLHRLLG + + + N L DVL+V Sbjct: 255 RMTESIMNSIDGLRGKLDDAVLNNVPTDAVTLHRLLGLREHGVSTKFNQHNQLAADVLIV 314 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF------- 321 DEASM+DL +M+R++ ALPDHAR+ F+GD DQL +VE G VL + + A F Sbjct: 315 DEASMVDLALMTRIVRALPDHARLYFIGDADQLPAVELGNVLEQLVSTEAASFDENANVP 374 Query: 322 --TAERARQLSRLTGTHVPAGTGTEAASLRDS-------------LCLLQKSYRFGSDSG 366 T + + VP+ A+L + LQ RF Sbjct: 375 NGTNSLNSNDNAFSLGGVPSLMRQHIATLCPHLPLLPVDEQAKSYVATLQAPQRFKGQ-- 432 Query: 367 IGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL----- 421 + ++A AI RGD + +D ++ + ++ + + + L Sbjct: 433 VAKVATAIQRGDASGALAAITDKASDNDETAGLNSNIDSTLVSKTASRLQSGVHLWPEHQ 492 Query: 422 ----------------LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 + + + N + L +R+G GV GLN + ++ K Sbjct: 493 VSGRDLHQLAKESFLPIFDAGSAEEALNRLNVVRWLTPVRKGGMGVEGLNNLVFDAIKHK 552 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT-RVWFAMPDGN------ 518 R +Y+G+P+MI +N L NG++G+ +G WF Sbjct: 553 ---IRKREGHFYQGQPIMIVKNHHPQRLSNGEVGVIWPDSKGKLYAWFYQDSQASGQNGS 609 Query: 519 ---------------------IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS-- 555 ++S+ SR+P+ ET +AMT+HKSQGSEF+ LILP Sbjct: 610 SQKASANAGDSADKTLAQKQALRSISLSRVPQFETVYAMTIHKSQGSEFNQVVLILPKPD 669 Query: 556 --QRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 + + R LVYT +TRA+ + +D S + +R SG++ S Sbjct: 670 SEKAANLFHRGLVYTGLTRAKDGCLIISDTATFSHMVQRVDKRYSGMSEAIS 721 >UniRef50_C5RAF5 Exodeoxyribonuclease V alpha subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAF5_WEIPA Length = 834 Score = 363 bits (932), Expect = 1e-98, Method: Composition-based stats. Identities = 144/636 (22%), Positives = 234/636 (36%), Gaps = 105/636 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGD--EHPAVTL--AAALLSHDAGEGHVCLPLSR 57 QL+ ++ + +D QFAL D + V+ AA+ G + L Sbjct: 197 NNPYQLVIDIDGVSFKRID-QFALQQGIDALDDRRVSAGVIAAINLKTFESGDTYMVLPD 255 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L A + + L QA+ + ++ G LY+ ++ +E Sbjct: 256 LLATTKHLLEHAQRIE--------VDESLIKQALLTLTQEGVVVADGSYLYIREIFESEN 307 Query: 118 TVARFFNEVNHAIEVDEALLA--QTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGP 173 +A+ ++ + + + LD++ +D Q+ A ALT ++ +++GGP Sbjct: 308 QIAKELIDLTERKQQTYSRKDVVKYLDEVESANDFKYDATQREAIIAALTNQLFILTGGP 367 Query: 174 GTGKTTTVAKLLAALIQMADGERCR-------IRLAAPTGKAAARLTESLGKALRQLPLT 226 GTGKTT ++ ++A L ++ + + + L APTG+AA RL ES G A Sbjct: 368 GTGKTTIISGVVATLKKLLRQDGIKSDEIDQGVHLVAPTGRAAKRLQESTGMA------- 420 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 AST+H LLG L L +LVVDE SM+D + + L+ A+ Sbjct: 421 ----------ASTIHHLLGITGREANLDDVDIEELTGQLLVVDEMSMVDTQLFATLLSAV 470 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 +VI +GD+DQL SV G V D+ A + Sbjct: 471 RADMQVILVGDKDQLPSVGPGRVFYDLLASGILNYR------------------------ 506 Query: 347 SLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIA 406 L+ +R G S I LA + G T + D + L Q Sbjct: 507 -------ELETIHRQGKGSTIISLANDVKNGRLPDDFTDQKIDRSFFSAELRQVPN---- 555 Query: 407 MLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR 466 ++E+ + + + + Q+L + GV LNE + Sbjct: 556 LVEKIATSWQKK-------------GNSVADMQILAPMYRTQAGVNHLNEIAQNIFNPIT 602 Query: 467 KIHR-------HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR--------GQGTRVW 511 + + G VM ND +FNGDIG V Sbjct: 603 NKKKTILVKNGDFTFTFRVGDKVMQTTNDPENNVFNGDIGYISTILLAKDKANTDKKDVI 662 Query: 512 FAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVT 571 D + +A T+HKSQG+E+ + L + + ++ R L+YT +T Sbjct: 663 TVSFDTGEVIYTRENWQQLTLAYATTIHKSQGTEYKLVIMPLVNAFSRMLQRNLLYTGLT 722 Query: 572 RARRRLSLYADERILSAAI-ATRTERRSGLAALFSS 606 RA L L E A+ T R++ L A Sbjct: 723 RASESLVLLGQESAYQQAVLTTGVNRQTTLQARIMQ 758 >UniRef50_Q314D9 ATP-dependent DNA helicase, RecD/TraA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q314D9_DESDG Length = 740 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 126/617 (20%), Positives = 236/617 (38%), Gaps = 88/617 (14%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVA--GDEHPAVTLAA-ALLSHDAGEGHVCLPLSRLEN 60 L+ + + +D A + D P + + +G+ + L + Sbjct: 184 PYILIRELRGFGFKKVDK-IARKLGTPKDHTPRIRAGIQYCMHEALDQGNCWVEYEDLVD 242 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 + L+ + ++ + L++ + +S + + L+ + E+ +A Sbjct: 243 QA-NLLLVMDNLDSRIRIEASLDNLISERLLSCESHAGRFL-----VALSDILKMEQDIA 296 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 F + + + ++ L Q A AL IS+ISGG G+GK+ T Sbjct: 297 AIFTKADASNPHFKSTRNLQKLILRQAETLNEKQLEAVHSALQHSISLISGGAGSGKSYT 356 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 V+ + + + + L+APTGKAA RL E G+ +T+ Sbjct: 357 VSVI----NAVCEECDLEVVLSAPTGKAAKRLEEVSGRT-----------------GTTI 395 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP-DHARVIFLGDRD 299 HRLLG + + NP+ D+L++DE SM+D+ + L +A+ ++ +GD + Sbjct: 396 HRLLGY--DGKSFSKDSNNPIDADILIIDEFSMVDVSLAWHLFNAVDFARTAIVIVGDHN 453 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL V G +L D+ +L K Sbjct: 454 QLPPVGPGNILRDLIHSNAIP-------------------------------TVILDKVV 482 Query: 360 RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYL 419 R + + + AI +G+ Q D L D A L + + L Sbjct: 483 RQA--GVLKENSTAILKGEVRKTSDASTQGCRD--WYLADQFTDPGAARNFLLDLFDKRL 538 Query: 420 DLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK------RKIHRHPH 473 D L + Q+L +GP G LNE +++ +Q++ + Sbjct: 539 DAL--------GFDLIKDVQVLTPTHKGPLGTKSLNEDLQRLIQKRLWNVSVPETQLGRR 590 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSR--LPEHE 531 S + + V+ RN+ L + NG IG +D + +G ++ L + + Sbjct: 591 SPFLKHDKVIQTRNNYDLNVMNGAIGHVVDVLPNGTLLI-DFEGVAVEIEKGSPNLQDIQ 649 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +A+T+HK+QGSEF A +++ + + R L+YT VTRAR+ + D + Sbjct: 650 LAYALTIHKTQGSEFPCAVVVVHKAHSFMHHRNLLYTGVTRARKTAIVLGDRWGIRNCAK 709 Query: 592 --TRTERRSGLAALFSS 606 +R++ L+ L ++ Sbjct: 710 KCQVDDRKTFLSILLNN 726 >UniRef50_UPI0001B44E5F RecD/TraA family helicase n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI0001B44E5F Length = 639 Score = 362 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 136/621 (21%), Positives = 232/621 (37%), Gaps = 98/621 (15%) Query: 14 KQLRPLDVQFALTVAGDEHPAVTLAAALLSHDA----GEGHVCLPLSRLENNEASHPLL- 68 + D A + + A+L + G +C+ + +N Sbjct: 80 IKFIYADK-IANNLGLSADNQKRVVCAILEYLNYRTDNNGDMCIYRDMVFSNLNRFLNRF 138 Query: 69 ---ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNE 125 + +++ E L A + V + +Y + E + Sbjct: 139 SSYSNNNISEDQIKFALEELEALKLVIIEKDEK----GNTYIYKSFYNYVENNIVNNIKN 194 Query: 126 VNHAIEVDEALLAQTLDKLFPVSD-----EINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + + + E L + ++ + +K A L ++S+I+GGPGTGKT Sbjct: 195 LLNKPKS-EFLQKKDINNFISYYESTFFTLDLKRKEALNTVLNSKLSIITGGPGTGKTFL 253 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 ++ L + + +IRL APTGKA+ R+ E + ++ST+ Sbjct: 254 TNIIVNCLKYI--NPKVKIRLLAPTGKASNRMKELIKM-----------------ESSTI 294 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 HR L P ++ + DV+++DEASMID + +LI + ++ VI +GD DQ Sbjct: 295 HRGLKINP----YKNTELEEITEDVVIIDEASMIDASLFDKLISKINENTMVIIVGDVDQ 350 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L SV AG +L D+ + L K +R Sbjct: 351 LPSVGAGLILKDLIDSNIIP-------------------------------VVKLNKIFR 379 Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLD 420 DS I + +N G +D DI L ++G D+I E + + Sbjct: 380 QSKDSSIILNSHKVNSG-----LLTTSRDGIDI---LNKTGSDFIFWKESNIFKIKSNIL 431 Query: 421 LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR---HPHSRWY 477 + F + +L L+ GV +N ++Q K ++ + Sbjct: 432 RSIKCLMEKYNFK-FEDIYILTPLKLNEIGVKEINRVLQQEFNPKSSNPEYVIDNYNCFR 490 Query: 478 EGRPVMIARNDSALGLFNGDIGIALDR----------GQGTRVWFAMPDGNIKSVQPSRL 527 G VM N+ LG+FNGDIG V + + D N+ + Sbjct: 491 IGDRVMQNSNNYNLGVFNGDIGFIRKIYTKVSQKGILEYEIEVEYKIHDKNVI-YTEDLI 549 Query: 528 PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 E E ++AMT+HKSQGSEF + + + + R L+YT +TRA+ +L + +E L+ Sbjct: 550 DELELSYAMTIHKSQGSEFPAVIMPIHHSQRTSLNRNLIYTGMTRAKEKLIMIGEEEALN 609 Query: 588 AAIATRT--ERRSGLAALFSS 606 +I R S L Sbjct: 610 YSIEQTKSLNRISRLREKLER 630 >UniRef50_D2S6B9 Exodeoxyribonuclease V n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S6B9_9ACTO Length = 659 Score = 362 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 148/598 (24%), Positives = 227/598 (37%), Gaps = 99/598 (16%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLE---NNEASHPLLATCVSEIGELQNWEECL 85 D + A L +GH LP + E +A + + + E Sbjct: 137 QDTRRGRAVVAHTLRTATRDGHTVLPADLVVAALRAEGVADPVAAIGAAVESGEVLEHEP 196 Query: 86 LASQAVSRGDEPTPMILCGDR---------LYLNRMWCNERTVARFFNEVNHAIE--VDE 134 + + P + L L R E VA + E D Sbjct: 197 PEPEYDEDAGDLGPHQPDDELPEPDPALRTLSLARYGMAEEAVAENVARLAATAERIADP 256 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 A + + QK A A L +S+++GGPGTGK+ TVA ++ L Sbjct: 257 AAVRSVAR------GLDDAQKQAVAQVLGAGVSLLTGGPGTGKSRTVAAVVKLL----QA 306 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 + + LAAPTG+AA RL E A T+HRLLGAQ S Sbjct: 307 KGAEVALAAPTGRAAKRLEELTDH-----------------PAVTVHRLLGAQGTSGGFA 349 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + PL DV+VVDEASM+D+ + + L++A D ++ +GD QL S+ G VLGD+ Sbjct: 350 RNEEWPLDADVVVVDEASMLDVELTAALLEACQDGTHLLLVGDPAQLPSIGPGHVLGDLI 409 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 + L YR I +LA A+ Sbjct: 410 DSGVVP-------------------------------VTELTTLYRQAEGGAIARLANAV 438 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 G+ V + E + + R + L+ L I Sbjct: 439 RGGELPPVDS--------------PDREVVVVPAGGSAEAAKRVVQLVTDSIPRALRIDP 484 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSAL--- 491 Q++ + GP G LN+ ++ + + G V+ N L Sbjct: 485 AT-VQVVTPVHRGPAGTIELNKALKARLNPGDGTVWG----FDVGDRVVATANHLDLEPT 539 Query: 492 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 G NG+ G+ G GT + G +V S + + WA+TVH++QGSE+ + Sbjct: 540 GFANGETGVVTGTGDGT-LDVDFASG-PVTVSGSAMSDLRHGWAITVHRAQGSEWPGVVV 597 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLY-ADERILSAAIATRT--ERRSGLAALFSS 606 +LP + +++R LVYTA+TRA+R LS+ A L+ A++ RR+ LA L + Sbjct: 598 VLPPEAGGMLSRPLVYTALTRAQRHLSIVHASGAALARAVSQVDVRPRRTRLAQLLAE 655 >UniRef50_D0W4K0 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4K0_NEICI Length = 593 Score = 360 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 191/600 (31%), Positives = 279/600 (46%), Gaps = 53/600 (8%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 ++F A++ L GH + L + Sbjct: 28 IRFLERYTDSGAEALSSYIERLFQALQNGHSFIRLKK----------------------- 64 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLA 138 E L++ G+ +P+IL G++L+L RMW E +A + A D A Sbjct: 65 EEASFLSTLKPVVGESASPLILEGEKLFLGRMWQLEYDLAAEIKRLAAAGTSVPDTAGAR 124 Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 Q L K F Q+ AAA+AL + VI+GGPGTGKTTTVAKLLA + DG Sbjct: 125 QNLAKWFQGVG-SEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLALICS-GDGNLPH 182 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI-PEDASTLHRLLGAQPGSQRLRHHA 257 I LAAPTGKAAA + +L +A+ D ++ + + T+HRLL +P + + Sbjct: 183 IALAAPTGKAAAHMARALHRAINSFDAPDNVRRHLLKLEGQTVHRLLKLRPPKMQPAFNP 242 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 PL DVL++DEASM+D +M +L+ A+ ARVI LGD +QL SV GAVL + Sbjct: 243 VYPLPFDVLIIDEASMLDTVLMLQLLKAVKTGARVILLGDENQLPSVGVGAVLSVLSQKT 302 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G E +L H ++ L + L S+RFG +SGIG L+ ++ G Sbjct: 303 LLG--GEIYNKLVEYLPEHGFPL-CSDVPVLAQNTARLSFSHRFGDNSGIGCLSRSVVSG 359 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 D + F+ +K L S A +E + Y + + ++ Sbjct: 360 D----EAQAWALFSRFDKELEHSECRLNAQVERLYRTHKGYWQAVDE-GNIESAYTGISD 414 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +L A R+ NE ++++KR I H ++ G P+MI +ND ALGLFNGD Sbjct: 415 VVVLAAWRQ---DADNFNEAYCNYVRRKRNIPE--HQAYFAGEPIMIRQNDYALGLFNGD 469 Query: 498 IGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 IG+ +D Q +F DG K V S LP+ E +AMTVHKSQGSE+ L+ P Sbjct: 470 IGLIMDNVQRSGSLSAYFPDTDG-FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPP 528 Query: 555 SQRTPV--------VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 S + ++REL+YTA+TRA+ + + E A AT R++ L + Sbjct: 529 SAASSNEEDDALSGLSRELLYTAITRAKEKFVFFGGEETFRQAAATVKVRQTALGNMLKR 588 >UniRef50_Q8K9A8 Exodeoxyribonuclease V alpha chain n=4 Tax=Buchnera aphidicola RepID=EX5A_BUCAP Length = 602 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 162/613 (26%), Positives = 304/613 (49%), Gaps = 31/613 (5%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 M + L K + +D F+ ++ ++ + L +A +S ++ GH+ LP+ E Sbjct: 1 MNMSHLLQNFANKKIITLVDFYFSQFISK-KNSIIMLISACVSFESKNGHIFLPIEYFEK 59 Query: 61 NEASHPLLATCVSEIGELQN-----WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCN 115 N +++I + N W L + G TP++ D++YL ++W Sbjct: 60 NCFFSISNKQFINKILKCLNKKKINWSLELSEHISCGDGSIITPLVFYKDKIYLYKIWKA 119 Query: 116 ERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGT 175 E+ + E N +D L+ LF + + QK+A + L I I+ Sbjct: 120 EKKILERLYEKNQFDTIDTQQCLNILNNLF-SKKKHDLQKIAVILTLINNIIFIT----- 173 Query: 176 GKTTTVAKLLAALIQMADGERCRI--------RLAAPTGKAAARLTESLG-KALRQLPLT 226 I + +L+APTGKA L E L K L + L Sbjct: 174 ----GGPGTGKTTIILKIIIALIKNAKKKIKIQLSAPTGKATENLIEILNDKWLNRYLLK 229 Query: 227 DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL 286 +E+K+ T+H+LLG S+++ + N L +D+L++DEASMID+ MMS ++ AL Sbjct: 230 EEKKQFSFNPIMTIHQLLGISKKSEKIFFNKNNLLMIDILIIDEASMIDILMMSNILSAL 289 Query: 287 PDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAA 346 ++IF+GD +QL V++ ++L IC+YA G++ + L +T + + Sbjct: 290 SKKTKIIFIGDHNQLKPVKSSSILKYICSYAEDGYSLKTQSILQEITQNSIINYKINKKN 349 Query: 347 S--LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDY 404 + + D +C+L+KSYRF +GI L+ A+ + + +F+ ++ + S +Y Sbjct: 350 TSYISDKICVLKKSYRFEKKTGIYILSNAVYNKETKIFEKLFKNSIENVFFYEINSEIEY 409 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 M+ + + + + II+ F +Q+LC ++ G FGV +N+ +E+ M + Sbjct: 410 KKMINIIINNNKIFWRKIYEKKNIKEIIKTFKNHQILCIVKNGFFGVNFINKILEEEMYK 469 Query: 465 KRKIHRH---PHSRWYEGRPVMIARNDSALGLFNGDIGIA-LDRGQGTRVWFAMPDGNIK 520 + ++ + WY G+P++I N+ LG+FNG+IGI L + +V F D I+ Sbjct: 470 RNIFNKRFYINNKLWYIGKPIIITENNQCLGIFNGEIGITNLSQKNTLQVSFLKKDNFIE 529 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 ++ L ++T+W++TVHK+QGSEF++ +LILP++ ++ ++++YT +TR R++L+++ Sbjct: 530 NIPIEILKNYKTSWSITVHKAQGSEFNNISLILPNKNLKILKKDILYTGITRTRKQLNIF 589 Query: 581 ADERILSAAIATR 593 + + I + Sbjct: 590 STKEIFIKTVLKN 602 >UniRef50_A5EVY1 Exonuclease V, alpha subunit n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVY1_DICNV Length = 524 Score = 359 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 173/530 (32%), Positives = 266/530 (50%), Gaps = 51/530 (9%) Query: 75 IGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDE 134 E + L+ + ++ P++ G L+L R+W E +A + +A + Sbjct: 46 AAENAIADGALIVTADAAKKGAVAPLVSDGTFLWLYRLWFQEWRLASCIQKKLNAAD--- 102 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 L+ QK A + LTR++S+I+GGPGTGKT TVA+++AAL +A Sbjct: 103 ---DSILEHNSFDDGLNAEQKQALKMGLTRQLSIINGGPGTGKTFTVARIVAAL--LARD 157 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 I LAAPTGKAA RL +L +A LT + A T+HRLLG + R Sbjct: 158 PDLTIALAAPTGKAAQRLEIALHQAFITAQLTRPTQL---TTAQTVHRLLGVD-NTGTAR 213 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 +H L DV+++DEASM+ L + ++L AL H R+I LGD QLA+VEAGAVL D+ Sbjct: 214 YHEHYFLPYDVVIIDEASMLSLELAAQLFQALAPHTRIILLGDAQQLAAVEAGAVLHDLA 273 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 ++L + LQ+S RF SGIG LA Sbjct: 274 QQ-----------------------------SALNHHVVTLQESRRFHQTSGIGILARCT 304 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 +TA+ + DI L +Y + Y Y+ + A A D+++Q Sbjct: 305 QNASQTALTAALEH--EDIALSPLARRPNYDRL----YEPYRDYVAKVAAGAAVDVLLQQ 358 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLF 494 F+ Y++L R G +G A +NE++++ + + + +Y+G PVM+ RN+ A G+F Sbjct: 359 FDNYRILTKTRYGAYGTAAVNEQMKKRHLAQMGV--NGKRAFYQGAPVMVTRNNYAHGVF 416 Query: 495 NGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 NGDIGI L + ++ + + + + + +A+T+HK+QGSEF+ AL+L Sbjct: 417 NGDIGICLA-DERGQMLVYFREDFAVPLLFLKSDDLDFAYALTIHKAQGSEFEQVALLLD 475 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 Q +TRELVYT +TRA+++L L IL A+ T T+R +GL+ F Sbjct: 476 KQE-EGLTRELVYTGITRAKKQLLLETTPAILLKAMQTPTQRLTGLSTFF 524 >UniRef50_UPI0001C367B5 helicase, RecD/TraA family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C367B5 Length = 759 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 130/611 (21%), Positives = 215/611 (35%), Gaps = 94/611 (15%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAALLS---HDAG-EGHVCLPLSRLENNEASHP 66 + R +D GD H + + ALL G GH+ L Sbjct: 200 IPGFGFRRVDS-IRQKSGGDLHDPMRIKGALLCVLDEARGKSGHLYLEKKEHIKAALYLL 258 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN-E 125 +S + + + ++ + +Y ++ E AR Sbjct: 259 NEKVLLSNNRIREQ-----QVTDTLQELILNGAVVSMKENIYKPNIFEMEDETARQIALR 313 Query: 126 VNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 + + L + + F +S N Q A +S+I+G PG+GKT+ + + Sbjct: 314 LLDRTPCPNMDSLLEQVKNRFGLS-LSNMQAKGVQQACMYNLSIITGPPGSGKTSAIKAI 372 Query: 185 LAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 + + + I+L APTG+A+ R+ ES G E+ASTLH + Sbjct: 373 IEMFRILH--PKGIIKLMAPTGRASRRMVESTG----------------FEEASTLHSGM 414 Query: 245 GAQPGSQR-LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 R + L D+++VDE S++D+ +MS+ L + +++ +GD DQL S Sbjct: 415 CIVSEEDENYRKKEPDLLEADLVIVDEVSLVDMWLMSQFFKRLKRNTKIVLVGDVDQLPS 474 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V AG VL ++ + +L + +R Sbjct: 475 VGAGNVLYEMIHCGLIP-------------------------------VTVLDEIFRQEK 503 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 S I A IN+G + DF I + + + Sbjct: 504 GSTIPHNAKLINQG---CTRLHGSDDFIFIPSVNQA-----------------KAAETIV 543 Query: 424 ARAEPDLIIQAFNEYQLLCALR-EGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEG 479 R ++ + Q+L R EG VA LN I + + + G Sbjct: 544 ERYCQEIAENGIEQVQILSPFREEGAASVAHLNAVIRERVNPFCSTEDEIHTGSKSFRVG 603 Query: 480 RPVMIARNDSALGLFNGDIGI---ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAM 536 +M +N + NGD+G D +G RV G L E ++A Sbjct: 604 DRIMQTKNTEH--VSNGDLGFIRYVKDTPEGKRVGMDFGPGRELEYGFEDLSHVELSYAT 661 Query: 537 TVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RT 594 TVHK GSEF + ++ R L+YTAVTRA+ ++ L + L AI Sbjct: 662 TVHKGMGSEFSIILFPVLEAHKIMLYRNLIYTAVTRAKTKVMLVGQKSALLTAIHRNGNN 721 Query: 595 ERRSGLAALFS 605 +R + L Sbjct: 722 KRNTLLGHRIR 732 >UniRef50_D0LWH5 Exodeoxyribonuclease V n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWH5_HALO1 Length = 749 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 188/653 (28%), Positives = 258/653 (39%), Gaps = 73/653 (11%) Query: 23 FALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSR-----LENNEASHPLLATCVSEIGE 77 ++AG AV L A A +G LP+ L S E Sbjct: 87 LQWSLAGRHKRAVALLALATMISARQGSSRLPIDLAPDGYLARLLGSLLSAGEMQLAPAE 146 Query: 78 LQNWEECLLASQA----VSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVD 133 + E L A + R E P+I +Y +RM E +A E D Sbjct: 147 VLRDIEALPRLPALDKVIGRPGEYRPLIFSDGCIYQHRMLWCEDQLAARLRERLGGARDD 206 Query: 134 EALLAQTLDKLFPVSD-----------------------------------------EIN 152 ++ + + + + Sbjct: 207 TSMAGRAAPRTTAGTAAGAAGDSAGAVAGDAASEDAASAALAAVLARPAMVGADAVVLSD 266 Query: 153 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 Q A A +R VISGGPGTGKT V +L L ++ + LAAPTGKAA R+ Sbjct: 267 EQAAAVRAATRQRFCVISGGPGTGKTAIVVTILRTLARLGESPESA-LLAAPTGKAANRM 325 Query: 213 TESLGKALRQLPLTDEQKKRIPEDA---STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 S+ AL +P D +++ E A TLHRLLG P R R H NPL ++VD Sbjct: 326 GSSIRSALLAVPDPDPVDRQLLERASEPQTLHRLLGYVPVLDRFRQHENNPLRARTVIVD 385 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA---NAGFTAERA 326 EASMID +M RL+ A+P R++ LGD DQL SV+AGAVL D+ A + GF Sbjct: 386 EASMIDAELMERLLRAVPSETRLVLLGDADQLPSVDAGAVLRDLVAAGTGDDGGFARRLT 445 Query: 327 RQLSRLTGTHVPAGTGTEAASLRDSLCLLQ-KSYRFGSD---SGIGQL----AAAINRG- 377 A ++ L R + GI L A G Sbjct: 446 HSYRMDVRDPAGRAILGAAQAMNRGETALALPIRRAAKELQWHGIELLDTVGATGATEGT 505 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 A DF D + + A L + A+ ++ + Sbjct: 506 TAPAADIAAVNDFVDHWYDKRIASDREFARLSTKTFQRHDDAFTPEDAADLRALMSIYER 565 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +LL R G +N R+ + + + P +Y G PVM+ RND GLFNGD Sbjct: 566 SRLLTVTRRYDTGAEAINRRLHRRVITAASVDYGPD--FYPGEPVMMRRNDYERGLFNGD 623 Query: 498 IGIALDRGQGT-----RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALI 552 G+ + + R+ FA + + E +AMTVHKSQGSEF AL+ Sbjct: 624 QGVVVRVSENGEPQRFRLAFARGEEFAVFSLDALRMHVELAFAMTVHKSQGSEFSEVALV 683 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 LP + P+ TRE++YT VTRARR + L +L AIA R ER SGLA + Sbjct: 684 LPLEAIPLATREMLYTGVTRARRAVVLVGAPALLRTAIAQRGERFSGLADKLA 736 >UniRef50_UPI0001C3224F exodeoxyribonuclease V, alpha subunit n=2 Tax=Actinobacteria (class) RepID=UPI0001C3224F Length = 616 Score = 358 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 213/625 (34%), Positives = 304/625 (48%), Gaps = 57/625 (9%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDA---GEGHVCLPLSRLEN 60 L + L DVQ A +A A + A GHV + L+ + Sbjct: 19 PALLRAFNDAGVLSIADVQVARRLAALGDVADAELLLAFALAARAPRLGHVLVDLATIRA 78 Query: 61 NEASHPLLATCVSEIGELQ--NWEECLLASQAVS----RGDEPTPMILCGDRLYLNRMWC 114 A + + + W L V G + TP+ L G LYL+R W Sbjct: 79 TVAVDTEERIDLDALPWPETGAWVAALAGCALVGVGDEDGADTTPLRLVGTALYLDRYWR 138 Query: 115 NERTVARFFNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGG 172 ER VA A+ VDEA L L +L P + Q+ A A A RR + ++GG Sbjct: 139 EERQVAADLRGRLEALPAGVDEAALTARLKRLAP---DDARQRNAIAAAAVRRFATVAGG 195 Query: 173 PGTGKTTTVAKLLAALIQMADGERCR---IRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 PGTGKTTTVA++ A +++ A E I LAAPTGKAAARL E + QL T + Sbjct: 196 PGTGKTTTVAQIAALVVEQARAEGRPVPLIALAAPTGKAAARLEEQVHHRAAQLDTTPDV 255 Query: 230 KKRI-PEDASTLHRLLGAQPGS-QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 ++++ ASTLHRLLG +PGS R RH L D+++VDEASM+ L +M+RL++A+ Sbjct: 256 REQLAGLRASTLHRLLGWRPGSHSRFRHDRHARLPHDMVIVDEASMVSLTLMARLLEAVR 315 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 AR++ +GD DQLAS+EAGAVLGDI A G Sbjct: 316 PDARLVLVGDPDQLASIEAGAVLGDIVRAARPG--------------------------- 348 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGE----- 402 + L++ YRFG +GIG ++AA+ GD A+ ++ + +G+ Sbjct: 349 --AGIVQLERVYRFG--AGIGAVSAAVRAGDADALVAALVSAPAEVTWIPIDAGDPATAT 404 Query: 403 -DYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQF 461 +A + +A GR + + + A ++LLCA R GP GV +E + Sbjct: 405 AAVLAPVRDAATRAGREVIAAALGGDGRAALDALGAFRLLCAHRRGPHGVTTWMPLVEGW 464 Query: 462 MQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKS 521 + +R Y GRP++I ND L LFNGD G+ + G G I + Sbjct: 465 LAGD-IAATGTWARDYPGRPLLITANDYDLDLFNGDTGVVVASPSGGLTAAFERRGEIVA 523 Query: 522 VQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYA 581 V+P+RL +T AMT+HKSQGS+F AA+++P+ + ++TREL+YTAVTRARR L + Sbjct: 524 VRPARLRAVDTVHAMTIHKSQGSQFGTAAVVVPAADSRILTRELLYTAVTRARRHLIVIG 583 Query: 582 DERILSAAIATRTERRSGLAALFSS 606 E L AA+ R SGL+ + Sbjct: 584 TEDALRAAVHRPAARASGLSGRLGA 608 >UniRef50_D1R7X6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R7X6_9CHLA Length = 597 Score = 358 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 159/618 (25%), Positives = 248/618 (40%), Gaps = 63/618 (10%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVC--LPLSRLENNEAS 64 L +E + L A E PA + LLS GH+C + + + Sbjct: 11 LNALLELEILPYEAYAVAKLSVEHEAPAAFICHLLLS--TQNGHLCTRIKQDVVSPSIDE 68 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEP--TPMILCGDRLYLNRMWCNERTVARF 122 + E+ E L +AV + + + YL + W E Sbjct: 69 VWIGEPHQKELIEPLLLHLLDLVKEAVQKRSDDLSQIIYRREHAYYLQKHWQQETLWINC 128 Query: 123 FNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 +V +D + + L + Q A A + + +I GGPGTGKT T Sbjct: 129 VKKVLMPANQWIDSDAIQTEVSHLIDNQKLLPEQAQAILKAAQQNLLLICGGPGTGKTYT 188 Query: 181 VAKLLAALIQMADGERCR---IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 +L+ L E+ + I LAAPTGKAA+ L SL KA LP + A Sbjct: 189 AGQLIKTLWNHLPPEKQKTFQIALAAPTGKAASNLQNSLAKATENLPNWEIP------KA 242 Query: 238 STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 TLH LL P + + + +PL D++++DE+SMIDLPMM +L +L A++I LGD Sbjct: 243 KTLHALLNIIPY-KYAKKRSFSPLAADLILIDESSMIDLPMMIQLFSSLKPSAKLILLGD 301 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 QL +V G+ D+ Y + D + L+ Sbjct: 302 HHQLPAVGIGSPFRDLRTYMQ-------------------------NKSEYADQVVELKT 336 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ-DFTDIEKRLLQSGEDYIAMLEEALAGYG 416 R GI A + GD + T+ + IEK L L Sbjct: 337 CLR-AELKGILDFAETVKSGDASGALTLLENAHLQGIEKVFLDEKMSLSNFYTFFLEKTA 395 Query: 417 RYLDLLQ-ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSR 475 + P+ ++ FN ++L LR+GPFG+ LN + + Q + Sbjct: 396 PFFSFDNIQNRSPEELLTVFNRVRILSPLRKGPFGIETLNHLLLERFMQNHSTLSPFVA- 454 Query: 476 WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV----------WFAMPDGNIKSVQPS 525 P+++ +ND LFNG+IG+ + + + I+ + Sbjct: 455 -----PILLTKNDHKSELFNGEIGVLVRLQKNEGLQPGDYALFPCKAKDGSETIRRIPAL 509 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 LP+ E + ++VHKSQGSEFD L+LPS + V RE++YTAVTRA++ L ++ D Sbjct: 510 LLPQFEYAYCLSVHKSQGSEFDQIFLMLPS-GSEVFGREILYTAVTRAKKYLQIWTDPNT 568 Query: 586 LSAAIATRTERRSGLAAL 603 + + ++R S Sbjct: 569 FTMTLKQTSKRLSSFVER 586 >UniRef50_B1MY70 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=3 Tax=Leuconostoc RepID=B1MY70_LEUCK Length = 799 Score = 357 bits (916), Expect = 7e-97, Method: Composition-based stats. Identities = 138/633 (21%), Positives = 236/633 (37%), Gaps = 109/633 (17%) Query: 4 QKQLLEAVEHKQLRPLDV---QFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLEN 60 +L+ + + DV Q + + + AA+++ GH + +L Sbjct: 192 PYRLVFEFDGISFKVADVVGQQLGIDRLDTKRLQAAVYAAIMNVSFQYGHTYVTREQLRQ 251 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVA 120 S I A++ E + + D++Y ++ E VA Sbjct: 252 ISYQLLRENRIDSAIDS------------AITMLIEQHVLTVDDDKIYATTLYVAENQVA 299 Query: 121 RFFNEVNHAIEVDEALLAQTLDKLFPVSD---EINWQKVAAAVALTRRISVISGGPGTGK 177 + + HA L A +D F + Q A L ++ +++GGPGTGK Sbjct: 300 QHLTRLVHA-PAPIDLTAADVDSGFDTPSQLILDDTQIAAVKAGLNAQVFLLTGGPGTGK 358 Query: 178 TTTVAKLLAALIQMADGER------------CRIRLAAPTGKAAARLTESLGKALRQLPL 225 TT V ++A ++ +++A+PTG+AA R+TE G Sbjct: 359 TTIVKSIVATWQKILQHHAKFADNAQDFLKLYAVKMASPTGRAAKRMTEVTGH------- 411 Query: 226 TDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDA 285 DA+T+HRLLG NP+ +L++DEASM+D+ + ++L+ A Sbjct: 412 ----------DATTIHRLLGIT-DLGEPEFDNENPISGGLLIIDEASMLDIELTAKLLAA 460 Query: 286 LPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEA 345 +P ++I +GD DQL SV G VL D+ Sbjct: 461 IPSGMKLIIVGDSDQLPSVGPGNVLADLVNSGILPH------------------------ 496 Query: 346 ASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYI 405 L+ YR G S I LA I G + D + Q+ Sbjct: 497 -------IELETIYRQGRGSSITALAQNIKSGRLPEDFLENKHDRSTFMVSPEQAETAIK 549 Query: 406 AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 +++ A+ ++ Q+L + + GV LN + + Sbjct: 550 QVVQAAIKK-----------------NYTQDDLQILTPIYKTSAGVLTLNTMAQALFNPE 592 Query: 466 RKIHR---HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR--------GQGTRVWFAM 514 + + H+ + +G V+ NDS ++NGD+G + Sbjct: 593 KATKKSLQFGHTYFRKGDKVLQLENDSERDVYNGDMGTIIAVQSKQDKGNEDHEDRLVVD 652 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 DG + L + +A TVHK+QG+EF ++L SQ ++ R L+YT +TRA+ Sbjct: 653 FDGKELAYTKKDLSQLTLAYATTVHKAQGNEFKLVIMVLTSQFGLMLNRNLLYTGITRAK 712 Query: 575 RRLSLYADERILSAAIATR-TERRSGLAALFSS 606 L L D + + A T +R + L + Sbjct: 713 EALILVGDYQAFNRAAKTPVPQRATTLKQRLQA 745 >UniRef50_B1YJE6 Helicase, RecD/TraA family n=2 Tax=Exiguobacterium RepID=B1YJE6_EXIS2 Length = 741 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 149/626 (23%), Positives = 234/626 (37%), Gaps = 109/626 (17%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAA-ALLSHDAGEGHVCLPLSRLENNEAS 64 L+ V + D + L + G V + +L +AGEGH + L Sbjct: 191 LMYEVSGIGFKTADQIASHLGLIGLHPERVAASIMHILEQEAGEGHAFATVESLLQRAPR 250 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 L+ E LL V L LYL ++ E A+ Sbjct: 251 LLGEDP----GERLEQAIELLLTEDKVK---------LEEGCLYLPTIFYAEVRAAKELA 297 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSD-----EINWQKVAAAVALTRRISVISGGPGTGKTT 179 V E +A L + + + Q+ A +A+ + V++GGPGTGKTT Sbjct: 298 RVMANGSEQEVDVATILSAIGQLEERFGMEYAVQQREAIELAVKAPLMVLTGGPGTGKTT 357 Query: 180 TVAKLLAALIQMAD----------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 + +L AL ++ D GE L APTG+AA RL+E+ Sbjct: 358 VIKGILHALQEIHDWPLEKSQVKSGEVYPYVLVAPTGRAAKRLSEAT------------- 404 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 A T+HRLL + P+ VL++DE+SMID+ ++S L+ A+P+ Sbjct: 405 ----DVPAMTIHRLLKY--DGTNFQLDEDQPIAGKVLIIDESSMIDIYLLSSLLRAVPNG 458 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 +++F+GDRDQL SV G VL D+ Sbjct: 459 MKILFVGDRDQLPSVGPGQVLADLMDTDGIP----------------------------- 489 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 + L +R DS I +LA + +A D +S A E Sbjct: 490 --VVRLNVVHRQAEDSSILRLAHDLKNRVTSADLLAPLSDRRFYSLAPQESLRGIAAFAE 547 Query: 410 EALA-GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ---QK 465 +ALA GY ++ + Q+L G G+ LN +++ K Sbjct: 548 KALAKGYSKF------------------DVQILAPTYRGQVGIDELNIVLQKVYNPEAPK 589 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFAMPDGNI 519 ++ + + G ++ N++ ++NGDIG ++ A D Sbjct: 590 KREVKQGTRIYRSGDKILQLVNNAEENVYNGDIGEIVNIFFAKENVDKVDKIIARFDQTE 649 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 S + +A+T+HK+QGSEF + + +R L+YTAVTRA+ L L Sbjct: 650 VEYNRSDWDQFTHAYAITIHKAQGSEFPIVLMPVFFTGAFKHSRNLIYTAVTRAKASLLL 709 Query: 580 YADERILSAAIA-TRTERRSGLAALF 604 + D R A RR+ L Sbjct: 710 FGDPRAFHKASQEEEPRRRTRLIERL 735 >UniRef50_A8RCB5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCB5_9FIRM Length = 722 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 128/621 (20%), Positives = 233/621 (37%), Gaps = 103/621 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH----DAGEGHVCLPLSR 57 + +++ ++ D A ++ ++ + AA+LS+ G Sbjct: 182 ENPYRMVTDIDGIGFATADK-LAANLSFEKDHPYRIKAAVLSNVMELCMSSGDSYTTRIA 240 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 ++ + + + + + +I +R+Y + + E+ Sbjct: 241 IQRRMQKL---------------FGNEIELESYLEQLEMERLLIREDERIYHHTQYDAEK 285 Query: 118 TVARFFNEVNHAIE-VDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPG 174 +A F NE + E +DE L L+ L + Q+ A +S+I+GGPG Sbjct: 286 GIAVFLNEFAYTQETIDENELDSKLNALKERYHISYDSIQREAIRSFFNTPLSIITGGPG 345 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 TGKTT V +LA E RI L APTG+AA RL E Sbjct: 346 TGKTTIVQGILALAKIFLPNE--RIALCAPTGRAAKRLAEV-----------------CD 386 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 A TLH LL + + +A PL +V+++DE SM+D + L A + +++ Sbjct: 387 YPAMTLHSLLRWDLETNTFQANAQEPLPYEVVIIDEFSMVDAWLFYHLAMACANVKKLLL 446 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD DQL SV G VL DI A Sbjct: 447 IGDEDQLPSVGCGCVLRDILAANII-------------------------------KTTR 475 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L K +R S + LA + G + + +D + + + +++ A Sbjct: 476 LHKIFRQHEGSDVITLAHQVKEGYEDIIDDA--KDVAFFPAESHEIKDMVLKIVQNAFEK 533 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRH 471 + Q+L + G G+ LN +++ + +K + Sbjct: 534 GFSD-----------------TDVQVLAPMYGGVAGIDALNIALQKMINPADGYKKEVKV 576 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR------VWFAMPDGNIKSVQPS 525 + + E V+ +N G++NGDIG L+ A DG + + Sbjct: 577 GYRIFREHDKVLQLKNQPDDGVYNGDIGTILEIISADEDIHHQHCIIADFDGVLVEYRGE 636 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 + + +++HK+QGSE+ L + + ++ + LVYTA+TRA++ L L + + Sbjct: 637 AIYHLTHAYCISIHKAQGSEYPIVVLPIVADYRYMLQKRLVYTAITRAKKSLVLLGNREV 696 Query: 586 LSAAIATRTE--RRSGLAALF 604 ++ + R++ L + Sbjct: 697 FRRSLESNEHHTRKTTLLSKI 717 >UniRef50_A5WER9 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Psychrobacter RepID=A5WER9_PSYWF Length = 787 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 180/564 (31%), Positives = 271/564 (48%), Gaps = 109/564 (19%) Query: 107 LYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRI 166 +L+R W E +A+ + + + LD P + Q A VA Sbjct: 266 FWLHRTWQAEFNLAKTIQNILNQP-------IKPLDIHIP-DNLNAQQVQAVKVANENAF 317 Query: 167 SVISGGPGTGKTTTVAKLLAALIQ--------MADGERCRI---------RLAAPTGKAA 209 S+I+GGPGTGKT TVA+L+ AL Q A GE I L+APTGKAA Sbjct: 318 SIITGGPGTGKTYTVAQLVIALQQAQANSDAQQALGEGSTIRFSTDSAGLALSAPTGKAA 377 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 R+ ESL Q L + Q + ++A T+HRLLG R R+HAGNPL D+++VD Sbjct: 378 QRMQESL-----QAALDNAQVEVQLQEAKTIHRLLGIGRDG-RPRYHAGNPLGEDIIIVD 431 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 EASM+ + + + L+ A+ AR+I LGD +QLA+V+AGAVL D+C Sbjct: 432 EASMLGVELANYLVSAIKPGARLILLGDANQLAAVDAGAVLADLCR-------------- 477 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG--DKTAVKTVFQ 387 L+ L +S RF +DSGIG+LA IN D V + Sbjct: 478 ---------------IDVLQPIHAQLTESRRFHADSGIGKLATQINTTPTDMQQVWQLLT 522 Query: 388 QD----FTDIEKRLLQSGEDYIA--------------------MLEEALAGYGRYLDLLQ 423 D F + +L D A ++ + Y YL+ + Sbjct: 523 HDEALQFQSVNIQLGSDATDREADDVETAVFNHQLINSLSNKKIISKLSQNYLPYLNKIH 582 Query: 424 A--------------RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH 469 ++ FN +++L A G +G +N+ + ++ + K+ Sbjct: 583 QLIKHPIAKSVPEAVSLTVSELMSKFNRFRILTAGHNGEWGDHNINDYLTRWHMTQLKLP 642 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD---RGQGTRVWFAMPD---GNIKSVQ 523 S W+ GRPVM+ +N+ LGLFNGDIGI L +G+G R+ + G ++ Sbjct: 643 L-GKSPWFHGRPVMVLQNNYELGLFNGDIGICLQTQQKGEGGRLEVFFENKIQGIAVNLL 701 Query: 524 PSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 L T +AMT+HKSQGSEFDH A+ + + ++++EL+YTAVTRA++++S+++ + Sbjct: 702 NDEL--IATAYAMTIHKSQGSEFDHVAVTFDNSNSRLLSKELIYTAVTRAKKKVSIFSTK 759 Query: 584 RILSAAIATRTERRSGLAALFSSR 607 R L A+ T T+R +GLA F + Sbjct: 760 RALQKAVQTPTQRYTGLALQFEQK 783 >UniRef50_D2MPX0 Helicase, RecD/TraA family n=1 Tax=Bulleidia extructa W1219 RepID=D2MPX0_9FIRM Length = 727 Score = 354 bits (909), Expect = 4e-96, Method: Composition-based stats. Identities = 113/628 (17%), Positives = 220/628 (35%), Gaps = 109/628 (17%) Query: 1 MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLS----HDAGEGHVCLPLS 56 ++ +L+E ++ + D + D+ + A +LS G+ + Sbjct: 181 LENPYRLVEDIQGIGFKMADK-IGQYLGIDKKDERRIYAYILSLVDKMTMNGGNSFVGYQ 239 Query: 57 RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 L + L + Q ++ DR+Y + E Sbjct: 240 ELLEHFIRLSHLEEAIFSSVFNQILFH--------------GSLVQEDDRIYSLAQYEAE 285 Query: 117 RTVARFFNE--VNHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGG 172 +A N+ + E + L + + L Q A +++ Sbjct: 286 VGIANVLNQFPLETLEEYETKELQEEILSLQRELAIVYDETQIQAIHYFFQEDFVILT-- 343 Query: 173 PGTGKTTTVAKLLAALIQMADG--ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 G T L+ A +Q+ + APTG+AA RL+E Sbjct: 344 --GGPGTGKTTLIRAFVQLFRRLYPTRNVVCCAPTGRAARRLSEVS-------------- 387 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 A+T+H LL + + + +P+ D+L++DE SM+D + ++ A Sbjct: 388 ---DTKATTIHSLLQWNLEANVFQKNEEDPIQADLLIIDEFSMVDQWLFYHILRACGLVK 444 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 ++ +GD +QL SV GA+L D+ G+ Sbjct: 445 KICVIGDEEQLPSVAPGAILRDLIESKRFGYR---------------------------- 476 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 L YR S + +LA I + + F +D E + + +++ Sbjct: 477 ---QLTHIYRQKEGSEVIRLALDIRQENLD--LMNFHEDVRFEECAVNEIRPKIQKEIQK 531 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRK 467 AL +F + Q++ + G G+ LN +++ + +K Sbjct: 532 ALDE-----------------GLSFEDIQVISPMYNGTAGIEALNSSLQELLNPHSDHKK 574 Query: 468 IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR-------GQGTRVWFAMPDGNIK 520 H + EG V+ +N ++NGDIG + + V D + Sbjct: 575 EIHHGSRLFREGDKVLQLKNQPDDDVYNGDIGFIEEIRMENPKQHESLSVIVLFGD-HCV 633 Query: 521 SVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLY 580 L + + +++HKSQGSE+ + + SQ ++ + L+YTA+TR+ +RL ++ Sbjct: 634 EYSYQNLDKLNLAYCISIHKSQGSEYPMVIVPICSQHRSMLRKRLLYTAMTRSSKRLWIF 693 Query: 581 ADERILSAAI--ATRTERRSGLAALFSS 606 + I + + R++ L + Sbjct: 694 GSKEEFERGIHLSEKNVRKTTLVQRLTQ 721 >UniRef50_Q057F4 Exodeoxyribonuclease V, a chain n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057F4_BUCCC Length = 593 Score = 354 bits (907), Expect = 8e-96, Method: Composition-based stats. Identities = 161/578 (27%), Positives = 287/578 (49%), Gaps = 31/578 (5%) Query: 32 HPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN--WEECLLASQ 89 P V L L + A GH C+P + + + I N W +++S Sbjct: 39 SPEVILVILYLIYSARHGHSCIPKKHFVKKKIKRKNVFIKLLNIVSKNNINWFNTVISSM 98 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD 149 S G + TP+++ +YL + W +E + + + ++ + + K Sbjct: 99 LCSNGTQKTPLVIDKKYIYLYKYWYSENKIIELLYQKKSKKKKNKIEYKKLIKKYCSNYI 158 Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 + N QK A AL + + GGPGTGKT +A L+ LI+++ + APTGKA Sbjct: 159 DKN-QKNAVKKALIHNLFFLLGGPGTGKTNIIAYLILILIKISKKKIKIQL-TAPTGKAV 216 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL-RHHAGNPLHLDVLVV 268 +LT+S+ K L++ + +KK IP++ TLH+L Q + + + +D+L++ Sbjct: 217 NKLTQSIYKILKKKNIQKNEKKMIPKEGITLHKLFKIQKETNKNNAKYIKRKKKIDILII 276 Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 DE+SMI L +M ++ + ++IF+GD QL SVE G++L Sbjct: 277 DESSMISLNIMEIILTCIKKKTKIIFVGDVYQLPSVETGSIL------------------ 318 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 + + +L+K+YRF +SGI L + + + ++++ Sbjct: 319 -------KKICNFKKKKKEKKKIFFVLKKNYRFNKNSGINFLINQLKKKKIKDINKIYKK 371 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 + DI + L + DY+ ML++ Y +Y + + + P II FN+Y++LC + +G Sbjct: 372 KYKDIIWKNLNTSNDYLNMLKKIKLYYKKYWNYVNKKKNPKKIIHKFNKYRILCIINKGI 431 Query: 449 FGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT 508 FG +N+ ++ + + + WY G+P++I +N+ L L NGDIGI L + + Sbjct: 432 FGTKKINQYLDNYFIKINNKKKKKEF-WYHGKPIIIKKNNIFLKLMNGDIGICLYKKKKK 490 Query: 509 RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYT 568 +++F + G IK P L ++T W+ T+HKSQGSEF +I+P+ + ++EL YT Sbjct: 491 KIYFLLSTGKIKKFNPEILFHYKTAWSTTIHKSQGSEFLSVNIIIPNYFSNKFSKELFYT 550 Query: 569 AVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 A++RA++++++YA+++IL+ I ER SGL Sbjct: 551 AISRAQKKVTIYANKKILNKIINNNKERYSGLKKKIEE 588 >UniRef50_A9NFP8 ATP-dependent exoDNAse (Exonuclease V), alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFP8_ACHLI Length = 749 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 136/623 (21%), Positives = 243/623 (39%), Gaps = 99/623 (15%) Query: 5 KQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAA--ALLSHDAGEGHVCLPLSRLENNE 62 + + E ++ D+ ++ + + A AL++ EG++ L L + Sbjct: 180 RLMYEIDGFGFIKSRDIAEKFGISKTDIRTLKAALVYALITTSNSEGNLYLFEEELMSRV 239 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 + + A+ + ++L D+ +L +++ +E +A+ Sbjct: 240 SRVIDVDADF---------------KPAIDELIKENKLVLEDDKYFLKQIYRDEIDIAKR 284 Query: 123 FNEVNHAI--EVDEALLAQTLDKL--FPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 E+ VD LL L ++ D Q+ A A+ ++VI+GGPGTGKT Sbjct: 285 IKELKTYPLDHVDTELLELMLSQISIQKSIDYTEKQRQAIITAMQNPLTVITGGPGTGKT 344 Query: 179 TTVAKLLAALIQMADGERC------RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR 232 T + L + I L APTG+A+ R+ E Sbjct: 345 TLIDGFLELYAKYFKINLKSKDATNEIALMAPTGRASKRMRE-----------------L 387 Query: 233 IPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 + A T+H LG Q + + PL +++++DEASMID+ +M RL++++ D RV Sbjct: 388 LDFPARTIHSHLGFDFD-QSFKSNKVQPLVQNLIIIDEASMIDIYLMKRLLNSIIDGTRV 446 Query: 293 IFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSL 352 + +GD DQL SV G VLGD+ + + Sbjct: 447 VIVGDEDQLPSVGPGYVLGDLISSNVVP-------------------------------V 475 Query: 353 CLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL 412 L + +R DS I +LA++IN + + + D T I + A+ Sbjct: 476 IRLNEIHRQAKDSHIVKLASSINNQNLSQEDLISHNDVTFYSGTGEDIKRVIINQIGGAM 535 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIH 469 N+ Q+L +G G+ +N I+ + Sbjct: 536 ----------------KKGYDLINDIQVLIPQYKGDLGIDTMNLEIQAKFNPNYNQPPFM 579 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR---GQGTRVWFAMPDGNIKSVQPSR 526 + +Y G V+ +ND + NGDIG+ + ++ DG + + + Sbjct: 580 KFGDKTYYIGDKVIQLQNDKDKEIMNGDIGVVKAIRKNDKNQKILQVDFDGLLVNYDQNE 639 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L + +++HKSQGSE+ L + ++ +EL+YTA+TRA+ L + D R+L Sbjct: 640 LDTLNLAYVISIHKSQGSEYQVVFLPIIKSYLHMLKKELIYTAITRAKSHLLVLGDLRLL 699 Query: 587 SAAIAT-RTERRSGLAALFSSRE 608 A +R + L + E Sbjct: 700 QYASNQLVEKRHTMLKERLTHDE 722 >UniRef50_A6W6P3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W6P3_KINRD Length = 634 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 203/620 (32%), Positives = 301/620 (48%), Gaps = 44/620 (7%) Query: 6 QLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE 62 L E + L DV A + G++ V LA AL G V L L ++ Sbjct: 38 LLREFNDLGLLHAADVHVARRLGAVTGEDDERVLLAVALAVRAVRHGSVVLHLRQVPETV 97 Query: 63 ASHPL-----LATCVSEIGELQNWEECLLASQAVSR------GDEPTPMILCGDRLYLNR 111 + + T + + W L S + P+ L GD L+L+R Sbjct: 98 VPEDVEDSGAVGTVAVRWPDPEEWLAALRRSPLLVEHAPGETTGPAAPLHLVGDGLWLDR 157 Query: 112 MWCNERTVARFFNEVNHAIE-VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVIS 170 W E VA + A+ D A + LD+L+P + Q+ AAAV L +SV+ Sbjct: 158 YWRQELAVAEDLRARSAAVAGYDPAAVDAVLDRLWP-GGLADDQRTAAAVCLAHGVSVLG 216 Query: 171 GGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 GGPGTGKTTTVA+LLAA+ ++ G R+ LAAPTGKAAARLTE++ A TD+++ Sbjct: 217 GGPGTGKTTTVARLLAAVHALSPGPP-RVALAAPTGKAAARLTEAVVSAAGTDGFTDDER 275 Query: 231 KRI-PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 + + ASTLHRLLG +PGS R R+ A + L DV++VDEASM+ L +M+RL+ AL Sbjct: 276 RFLRSTTASTLHRLLGIRPGSVRARYDAEHRLPHDVVIVDEASMVGLGVMARLLAALRPG 335 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 AR++ +GD QLASVE GAVL D+ A ++ Sbjct: 336 ARLVLVGDPQQLASVEVGAVLADLV--------------------APAERAAPGAAPAVP 375 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 + LL++++RF GI +AAA+ RG V + + D+E + E Sbjct: 376 HGVALLRRTHRFADRGGIAAIAAAVRRGAAEEVVDLLRAGGPDVEFLEVPDEELVAGAAL 435 Query: 410 EALAG----YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK 465 EA+ + + + A + ++ LCA R G GV+ + +++ + Sbjct: 436 EAVRAEVLRRSAAVVEAARAGDAAAALTALDAHRTLCAHRRGTRGVSHWSALAQRWAVED 495 Query: 466 RKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPS 525 + R Y G PV++ ND +G+FNGD G+ LDR A G V + Sbjct: 496 LGVQPRTDGR-YVGLPVIVTANDPGVGVFNGDTGVVLDRDGTLVAAIARGAG-PLLVPLA 553 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 RL E AMTVH+SQGS+FD ++ +R+P+ TRE+ YTA+TRA+ R+ + Sbjct: 554 RLAAVEPVHAMTVHRSQGSQFDVVTVLAAPERSPLATREMFYTALTRAKVRVRVVGSPEA 613 Query: 586 LSAAIATRTERRSGLAALFS 605 ++AA++ R +GLA Sbjct: 614 VAAAVSRPLARATGLAERLR 633 >UniRef50_A0R7T4 ATPase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7T4_PELPD Length = 686 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 135/640 (21%), Positives = 230/640 (35%), Gaps = 107/640 (16%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAAL----LSHDAGEGHVCLPLSRLENNEASHP 66 V + D AL + D H LAA L S G+ + + + A Sbjct: 107 VNGIGFKKADD-VALRLGTDPHDPFRLAACLQFVMASMADDSGNTLVKPEDVISQAAKEL 165 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 + E + + + + + ++ GD L L R E+ + Sbjct: 166 DSENGSN--------IERIELAGELEQMEGREEIVRLGDMLALKRHHATEKRICEALRRR 217 Query: 127 NHAIEVDEALLAQTLDKLFPVSDE-----INWQKVAAAV-ALTRRISVISGGPGTGKTTT 180 V ++T + + + Q + + A R ++G GTGK+T Sbjct: 218 VELPPVPIKSPSETQRFIESIEQKIGITFSEEQVDSIKMVAAGHRTIAVTGYAGTGKSTV 277 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 L+ L+ D + ++ A +G A+ R+ G T+ Sbjct: 278 SKALIQLLLSKFDED--QVCCMALSGIASDRIRTLSGFNSF-----------------TI 318 Query: 241 HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ 300 H LG + Q H N L V+V+DE SM++ +M LI+A+ A +I +GD Q Sbjct: 319 HSALGWR--GQEFEHGPDNQLGYQVIVLDEGSMVNSFIMRNLIEAVDRDAVLILMGDPGQ 376 Query: 301 LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360 L + AG +I + L + YR Sbjct: 377 LPPIGAGDPFRNIIESGIIP-------------------------------VARLTRIYR 405 Query: 361 FGSDSGIGQLAAAINRGDKTA--VKTVFQQDFTDIEKRLL-----QSGEDYIAMLEEALA 413 DS + A I RG ++ +DF ++K L S +D + + EE Sbjct: 406 QSDDSVLSFFANDIRRGVVPTGYLQEEGFKDFQFVQKNLPGNYFRLSDKDKVPLREENSQ 465 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHR 470 +++ P I ++QLL +R+GP G LN+ ++ + + + Sbjct: 466 RIIEFIEAKMRAISP-YIKNPILDFQLLSPIRKGPLGTEALNDVAQRVFNPGEHEGRAVQ 524 Query: 471 HPHSRWYEGRPVMIARN------------DSA--------LGLFNGDIGIALD-RGQGTR 509 + G V+ N D +FNG +G+ LD Sbjct: 525 VGSVTFKPGDKVVHTLNRDMQIVKAHSLSDYHNNIDSSETKRVFNGSVGVILDGDSDNRE 584 Query: 510 VWFAMPDGNIKSVQPSRLPE--HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 + A P+G I L E +A+T HK QGSE+ + + S T ++T + +Y Sbjct: 585 LLVAYPEGFIAKYDSLLLSAGVLEMAYALTTHKCQGSEYRFVLIPISSAHTIMLTAQWLY 644 Query: 568 TAVTRARRRLSLYADERILSAAIA--TRTERRSGLAALFS 605 TAVTRA++++ + + + A T T R + L L S Sbjct: 645 TAVTRAKQKVLMVGQKYMFERACKSLTETRRTTVLEKLIS 684 >UniRef50_C8PVE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVE9_9GAMM Length = 653 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 159/602 (26%), Positives = 269/602 (44%), Gaps = 37/602 (6%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCL-------PLSRLENNEASHPLLATCVSEIGELQNWE 82 E P + L++ EGH L ++ + + EL N + Sbjct: 57 KEKPKILQIFDELNNQLSEGHTVYEMTVNSADEKSLIAALTTNNWASVIGVKEDELYNHD 116 Query: 83 -ECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL 141 + Q +++ + ++L+R W E+++A+ ++ H + ++ + Sbjct: 117 TNTPIILQKLNQAADGVGETQVNYIVWLHRQWHAEQSLAKQLMKIAHRKVAAFSGISASQ 176 Query: 142 DKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG------- 194 D + Q++A + +S+I GGPGTGKT TVAKL+ L + + Sbjct: 177 D-IDNGLAPNAMQQLAIEKSSQHALSIIIGGPGTGKTFTVAKLVTTLQKEHEHKRKQDPN 235 Query: 195 -ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 I L APTGKAA R+ +SL + L + + ++ ++A TLHRLLG Sbjct: 236 LPPLSITLTAPTGKAAQRMQQSLRIS---LQKSLQDEEITLDNAKTLHRLLGIGSDG-TP 291 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 R+HA NPL D+++VDEASM+ L + S+L+DA+ R+I LGD +QLA+V+AG+VL D+ Sbjct: 292 RYHAKNPLPDDLIIVDEASMLGLELASQLVDAIKPTGRLILLGDANQLAAVDAGSVLSDL 351 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 CA + R V + ++ I A Sbjct: 352 CAVTRLQPYITELTESKRFDSNSVVGQFALAIQQNLPAPKKIKLI--QRLLQPIDLQAIK 409 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP----- 428 ++ + Q +I + + +A+ + Y + L+Q Sbjct: 410 PSQSENPPDLAGKTQQTANIPFYPIDASSSLLAVFNQLAKPYHPFFALMQQWYSQPVNIF 469 Query: 429 -----DLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVM 483 + + F+ Y++LCA +G G +N+++ + KI R + +Y G P++ Sbjct: 470 AADNRKGLFEVFDSYRILCAGHQGQLGTQSINQKMSLAFTEFSKITRT-KAYFYHGLPII 528 Query: 484 IARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQG 543 I ND LGLFNGDI I L FA + +Q + +AMT+HKSQG Sbjct: 529 IQNNDYQLGLFNGDIAICLLYQGQLYACFA---EKVIPIQRLSRESCDYAYAMTIHKSQG 585 Query: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAAL 603 SEF A+ + T ++++ L+YTAVTR++ LS+Y+ + A+ + R++GL Sbjct: 586 SEFHTVAICIDKAHTRLLSQALIYTAVTRSKSALSIYSAKENFELAVTQKAVRQTGLQLQ 645 Query: 604 FS 605 F Sbjct: 646 FD 647 >UniRef50_Q0BMQ9 Exodeoxyribonuclease V n=20 Tax=Francisella RepID=Q0BMQ9_FRATO Length = 622 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 171/602 (28%), Positives = 280/602 (46%), Gaps = 73/602 (12%) Query: 26 TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECL 85 + + + L H GH CL ++ + N + + Sbjct: 64 DLEQKSNEILFHILMKLMHVYSHGHSCLKIADISNKTIFASEQSNQSDAKVGFKMPSSDK 123 Query: 86 LASQAVSRGDEPTPMILCGDR--LYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDK 143 +AS + + P+ LY+ R+W E +A F + + + +DK Sbjct: 124 IASILDNLNYDNLPIYFAKQYDSLYIKRLWNYENEIANFIKLKTIQNTQKDNRIEEVVDK 183 Query: 144 LFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 LF + EINWQK A +L S+ISGGPGTGKTTTVAKLL A+ + + RI L A Sbjct: 184 LFEPAGEINWQKQAVIKSLNYNFSIISGGPGTGKTTTVAKLLLAIQMLNQNQ-QRIALLA 242 Query: 204 PTGKAAARLTESLGKALRQL----------------------PLTDEQKKRIPEDASTLH 241 PTGKAA R+TESL L + L + +A T+H Sbjct: 243 PTGKAAQRMTESLKNTLATVIPSSLTTESTIQKNDIFKQVQDELNSVAQYLNNLEAQTIH 302 Query: 242 RLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQL 301 R LG +P S ++++ + DV++VDEASM+D+ + +LI A+ D+ ++I +GD +QL Sbjct: 303 RFLGLRPNSTYVKYNQQSKAPFDVIIVDEASMLDMNIFIKLIRAVADNTKLILIGDTNQL 362 Query: 302 ASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRF 361 SVEAG++L T + S+ LL K+YR Sbjct: 363 PSVEAGSLLA---------------------------NFTHDKYGSITPYTTLLIKNYR- 394 Query: 362 GSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDL 421 S I LAA++ +GD + + L+ L Y + Sbjct: 395 -SQQYINNLAASVLKGDVNIDSQQNENIKF-----------HSLRNLDIYLREYAKRYSQ 442 Query: 422 LQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRP 481 L+ + + N++++L A + G LN++IE+FM + + Y+G+P Sbjct: 443 LEKCRDYKEALTELNKFRILVANKNLEIGTDKLNQKIEKFMSKPIDSN-------YKGKP 495 Query: 482 VMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKS 541 +MI +N +LGLFNGD+GI G ++ + K+ + LP++E+ +AMT+HK+ Sbjct: 496 IMITQNSYSLGLFNGDVGIMWPDDTG-KLRAYFDGKDAKAFSLNMLPKYESVYAMTIHKT 554 Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 QGSEFD +ILP++ ++++L+YTA+TRA+ +L++ +++ L +R S ++ Sbjct: 555 QGSEFDEIVIILPAEDNEALSKQLLYTAITRAKYKLTIISEQSSLRDIAQKDIKRNSNIS 614 Query: 602 AL 603 L Sbjct: 615 EL 616 >UniRef50_C8XGW8 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGW8_NAKMY Length = 632 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 227/621 (36%), Positives = 312/621 (50%), Gaps = 37/621 (5%) Query: 6 QLLEAVEHKQLRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNE 62 L A L DV A +A + V LA A+ G VC+ L++ Sbjct: 26 LLRAANVADVLSAADVHVATRIAQLAGEPDDRVRLAVAMAVRGIRSGSVCIDLAQ----A 81 Query: 63 ASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARF 122 + LLA + L +W + + AS V G P+ D LYL+R E+ V Sbjct: 82 RATLLLADPGGDWPVLPDWRDAVRASLLVGAG---RPLQWEFDLLYLDRYRTQEQQVRDD 138 Query: 123 FNEVNHAIE--VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTT 180 + VD LA LD+LF D Q+ AA +A T +VI GGPGTGKTTT Sbjct: 139 LRDRRAQPPPVVDRVALADGLDRLFAGGD--PGQRHAAELAATGWTTVIGGGPGTGKTTT 196 Query: 181 VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL 240 VA++LA L+ G R R+ +AAPTGK AA ++ +A ++ ASTL Sbjct: 197 VARVLALLMGQ-PGARPRVAMAAPTGK-AAARLQAAVQAQAVALSPADRHDLPTLTASTL 254 Query: 241 HRLLGAQPG-SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 HRLLG PG SQR RH N L DV+VVDE SM+ L MM+RL++A+ AR+I +GD D Sbjct: 255 HRLLGWLPGRSQRFRHDRDNRLPFDVVVVDETSMVSLTMMARLLEAVRPDARLILVGDPD 314 Query: 300 QLASVEAGAVLGDIC-----------AYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 QLASVEAGAVL D+ A +A +A + S VP G A + Sbjct: 315 QLASVEAGAVLADLVAGLTAVPAAPPATGSATGSATESAAGSAAGPGAVPPGPPAIAPAR 374 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS----GEDY 404 D++ LL +++RFG D I +LAAA+ GD A V + D+ + G Sbjct: 375 ADAVALLDRTWRFGGD--IAELAAAVRAGDADAALAVLARPGADVALIAPEDTAGAGAAV 432 Query: 405 IAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ 464 A + + G + E ++ + +++LCA R GP GV RIE ++ Sbjct: 433 DAAVRPDVVGTAAAVRAAADAGEAQEALRRLDGHRVLCAHRSGPRGVTQWTYRIENWLAA 492 Query: 465 KRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQP 524 + + PH WY GRPV++ ND L LFNGD+G+A+ G RV F G I P Sbjct: 493 EDLLP--PHRLWYPGRPVLVTANDYTLRLFNGDVGVAVLTGGQLRVSF-SQHGRIVDYAP 549 Query: 525 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER 584 RL + +T AMTVH+SQGS+FD ++LP +P+ TREL+YTA+TRA+ R+ L E Sbjct: 550 GRLADVQTVHAMTVHRSQGSQFDRVTVVLPEADSPLCTRELLYTALTRAQTRVRLIGTEA 609 Query: 585 ILSAAIATRTERRSGLAALFS 605 + AA+A R SGL + Sbjct: 610 EVRAAVARPAARASGLRLRMA 630 >UniRef50_C5B4P9 Putative Helicase, RecD/TraA family n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4P9_METEA Length = 866 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 152/616 (24%), Positives = 234/616 (37%), Gaps = 90/616 (14%) Query: 7 LLEAVEHKQLRPLD--VQFA-LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L E +E R D A +A + L L + GH LP S L A Sbjct: 306 LAETIEGIAFRSADEVAHSAGHQLADPKRIRGALRFFLDARTREGGHCGLPPSMLVETVA 365 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + + + A V+ P P++ + + Sbjct: 366 DEIGVGAVAVRAELDEVADGRTHALDEVTNLIYPIPLLRDERDIA--------DRILTLM 417 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVSDEINW-QKVAAAVALTRRISVISGGPGTGKTTTVA 182 E A E E + + ++ Q+ AA A++ I +++GGPGTGKTTTV Sbjct: 418 AEAKPASETPEEACRLVDEAAAELGFVLDESQRQAAVSAVSEGICILTGGPGTGKTTTVR 477 Query: 183 KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHR 242 +L AL + ++ +A PTG++A R + G STLHR Sbjct: 478 VILKALQSVER----KVAIAGPTGRSAKRAADVTGAKT-----------------STLHR 516 Query: 243 LLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLA 302 +L + + + PL D L+VDE SM+D + + A+ + + +GD DQL Sbjct: 517 MLEWEAAAGGFTRNQRRPLQEDHLIVDEFSMVDTRLAAAFFQAVAPGSAITIVGDVDQLP 576 Query: 303 SVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFG 362 SV +G +L D+ A + +C L +R Sbjct: 577 SVGSGQILRDLIASGSVP-------------------------------VCRLSVVHRQK 605 Query: 363 SDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLL 422 +GI A IN G AV FT E G L + Sbjct: 606 DGNGIVAAAHNINAGALPAVSAKAADGFTFTEAY--------------GANGISEQLVRM 651 Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEG 479 R P+ I + Q+L +R+G GV LNE ++ + + R H + G Sbjct: 652 VTRDLPERGIDVSRDVQILAGMRQGEIGVTKLNEILKATLNPAAEDGRTVRLGHRLFTVG 711 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGTR-------VWFAMPDGNIKSVQPSRLPEHET 532 VM RN+ ++NG++G G+ R G+ + + Sbjct: 712 DRVMQMRNNYEKKVYNGEVGQICWVGEVKRGEKEMVTAIRVEYPGDQVVYTAEDADDIDY 771 Query: 533 TWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT 592 WA TVHKSQG EF ++P+ +++R L+YTAVTRA++ L D R L +AIA Sbjct: 772 AWATTVHKSQGCEFPVVLFVVPNSHQSILSRNLLYTAVTRAKQECHLVGDGRALRSAIAK 831 Query: 593 R--TERRSGLAALFSS 606 T R +GLA ++ Sbjct: 832 ADTTRRYTGLALRLAA 847 >UniRef50_Q6FF15 Exonuclease V, alpha subunit n=11 Tax=Acinetobacter RepID=Q6FF15_ACIAD Length = 592 Score = 345 bits (884), Expect = 4e-93, Method: Composition-based stats. Identities = 166/523 (31%), Positives = 247/523 (47%), Gaps = 30/523 (5%) Query: 96 EPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQK 155 + PMI G+ L L R W E+ +A ++ + + + LD L Q+ Sbjct: 78 QVAPMIYDGELLALYRYWMLEQRLAIQVVRLSQQV-IPPVEVMPHLDLL-----TDPHQQ 131 Query: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTES 215 A ++ T+ S+I+GGPGTGKT T+A+++A L Q RI +AAPTGKAA R+ E+ Sbjct: 132 AAMSMVATQAFSLITGGPGTGKTYTLARIIAVLNQA--IPNIRIAMAAPTGKAAQRMQEA 189 Query: 216 LGKALRQ---LPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272 L + + + TLHRLLG Q R HA PL DV+VVDEAS Sbjct: 190 LQASFNDEKLTASGLLSHELKQQTTQTLHRLLGL-GHQQLPRFHAKQPLPYDVIVVDEAS 248 Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRL 332 M+DL + + L +A+P R+I LGD +QLASV+ G+VL D+ R Sbjct: 249 MLDLKLATLLFEAVPAGCRLILLGDANQLASVDVGSVLADLQQVEALEQNRVNLVTSRRF 308 Query: 333 TGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392 L + Q + F + Q + D Sbjct: 309 REGAKIGEFAQFIQCLDVTWDPQQILHEFEHQIAVPQALQ-------PVSLLHDRDDMVQ 361 Query: 393 IEKRLLQSGEDYI--------AMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCAL 444 +E + +++ E Y A +E +IQAF++Y++L A+ Sbjct: 362 LEYLPPKVNLEHLTPYYQKLMQGFETFAQQLKHYRLHDYAESEVAAVIQAFDDYRILVAI 421 Query: 445 REGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR 504 R G FG+ +N+ +EQ++ Q I WY GRPVM+ ND LGL NGDIGI Sbjct: 422 RFGDFGLEHINKMVEQWLTQYLGILPVGG--WYIGRPVMMTYNDYQLGLSNGDIGICFRH 479 Query: 505 GQGTRVWFAMPDGNIKSVQPSRLP-EHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTR 563 + K + +RLP +T +A+T+HKSQGSEF H A++ V+++ Sbjct: 480 RTQYDQFEVYFPSLDKWIAANRLPKNIQTAFALTIHKSQGSEFRHTAIVFDHMAQKVLSQ 539 Query: 564 ELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 EL+YTA+TRA++ +SL D+ L ++ RT R+SGL + Sbjct: 540 ELIYTAITRAKQAVSLLVDQDALLQSLIIRTTRKSGLIKKINK 582 >UniRef50_B4RLU6 RecD n=26 Tax=Neisseria RepID=B4RLU6_NEIG2 Length = 592 Score = 344 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 190/600 (31%), Positives = 271/600 (45%), Gaps = 54/600 (9%) Query: 21 VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 ++F AG + + L GH + LS E + S Sbjct: 28 IRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSAL-------------- 73 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAI--EVDEALLA 138 A G P+IL G RL+L RMW E +A + A D A Sbjct: 74 ---------APVVGTSAAPLILEGRRLFLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGAR 124 Query: 139 QTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCR 198 Q L K F + Q+ AAA+AL + VI+GGPGTGKTTTVAKLLA + + Sbjct: 125 QNLAKWFQGAG-SEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLALICGENENLP-H 182 Query: 199 IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI-PEDASTLHRLLGAQPGSQRLRHHA 257 I LAAPTGKAAA + +L +A+ + ++ + + T+HRLL P + Sbjct: 183 IALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDH 242 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 PL DVL+VDEASM+D +M +L+ A+ ARVI LGD +QL SV GAVL + Sbjct: 243 IRPLPFDVLIVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVL--SQ 300 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 E ++L+ H L + L S+RFG +SGIG LA A G Sbjct: 301 KTVLDGETHQRLAGFLPEH-GFSVSANPPVLAQNTAHLSFSHRFGDNSGIGCLARAAVSG 359 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 D+ A F L S A +E + Y ++ + ++ Sbjct: 360 DEGA-----WALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKD-GNIEAAYAGISD 413 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497 +L A R+ NE ++++K I H ++ G P+MI +ND AL LFNGD Sbjct: 414 IVVLAAWRQ---DAEDFNEAYCSYVRRKMNIPE--HLAYFAGEPIMIRQNDYALELFNGD 468 Query: 498 IGIALDR---GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 IG+ ++ +FA DG K V S LPE E +AMTVHKSQGSE+ L+ P Sbjct: 469 IGLIMEDVGRQGSLAAYFADADG-FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPP 527 Query: 555 SQRT--------PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 S +++EL+YTA+TRAR + + ++ A+ T R++ L ++ Sbjct: 528 SDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAVNTVKVRQTALGSMLER 587 >UniRef50_B5JHU9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHU9_9BACT Length = 564 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 184/601 (30%), Positives = 275/601 (45%), Gaps = 64/601 (10%) Query: 16 LRPLDVQFALTVAGD---EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCV 72 D + D + + LAAAL + A EGH L S P Sbjct: 17 FTAADRMLVAHLRDDWGESNSWILLAAALANLSAREGHAFFDLGLPRGAGVSLPR----- 71 Query: 73 SEIGELQNWEECLLASQAVSRGDEPT--PMIL-CGDRLYLNRMWCNERTVARFFNEVNHA 129 +L +WE+ L S + P++L G LYL + + E+++A+ + Sbjct: 72 -SWPDLSHWEKILANSPVARSETDAGCKPLVLCSGTALYLEKYYAFEQSLAKLIAQRCEP 130 Query: 130 IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI 189 +E A R+ VI+GGPGTGKTT + L L+ Sbjct: 131 DSTEEIAEPA-------------------ERAAKRKFFVITGGPGTGKTTLALRYLNTLL 171 Query: 190 QMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLT-DEQKKRIPEDASTLHRLLGAQ 247 + R APTGKAAARL ES+ + +L L D ++ + T+HRLLGA Sbjct: 172 DKWELSRPPRFAAIAPTGKAAARLAESIASGVARLELASDREEALLGIPCLTIHRLLGAL 231 Query: 248 PGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAG 307 P R ++ +PL D LV+DE+SMIDLP+M RL +ALP +V+ LGD+DQL+SV+ G Sbjct: 232 PHRTSFRKNSRHPLRFDTLVIDESSMIDLPLMLRLFEALPSDCQVLLLGDKDQLSSVDVG 291 Query: 308 AVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGI 367 +VL D+ A + E + L S+ L K+YRF DSGI Sbjct: 292 SVLADMLAASEL------------------------EGSPLSSSVLRLTKTYRFSEDSGI 327 Query: 368 GQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAE 427 Q GD + D E L +D + + AL+ + Sbjct: 328 YQACQLARDGDSEGFSEMLDSGREDFEFHAL--RDDAKRIPKAALSRSFLRYKGIANSTT 385 Query: 428 PDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487 P+ + A NE L R G FG N +E+ ++Q++ + G P+++ N Sbjct: 386 PEEGLLALNEGITLTPTRRGAFGSLEFNRLVERMIRQEQNLDPLSTQSI-HGAPIIVLEN 444 Query: 488 DSALGLFNGDIGIALDRGQGTRVWFAMP---DGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 D L L+NGD+G+ + + + FA DG + + S LP HE+ +A+T+HKSQGS Sbjct: 445 DYELELYNGDLGLVW-IDEISGIAFAFFGGADGVTRKFRLSELPRHESAFALTIHKSQGS 503 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 EF + + +TRELVYTA +RA+ RL ++A++ LS+AI + R + LA L Sbjct: 504 EFLETVCLFAPEADRNLTRELVYTAFSRAKERLVVFAEKTTLSSAIGRQAFRATRLAELL 563 Query: 605 S 605 + Sbjct: 564 A 564 >UniRef50_A1KCB0 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease n=4 Tax=Proteobacteria RepID=A1KCB0_AZOSB Length = 650 Score = 340 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 229/607 (37%), Positives = 322/607 (53%), Gaps = 48/607 (7%) Query: 42 LSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEE------------CLLASQ 89 L + GHVCLPL+ + A + W+E LL S Sbjct: 45 LCLASAAGHVCLPLAAIAVEVAPEWGEDDAGWDEQSALPWDEGADPAAVAALRSRLLESG 104 Query: 90 AVSRGDEPT-------PMILC-GDRLYLNRMWCNERTVARFFNEVNHAIE--VDEALLAQ 139 AV + P++L DRLYL R++ E +A+ A V + + Sbjct: 105 AVVAAADLAAAAHEAHPLVLDADDRLYLRRLYDLEGRLAQALRTRAEAAPGAVADERVRA 164 Query: 140 TLDKLFPV--SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 L LFP + +WQ++A A+AL RR++VISGGPGTGKTTTVA + + Sbjct: 165 LLAPLFPAPAGEAPDWQRIAVALALGRRLTVISGGPGTGKTTTVAA--LLGALLGLQPQA 222 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 RI LAAPTGKAAAR+ E+L LP + +P +A T+HRLLG P R RHHA Sbjct: 223 RIALAAPTGKAAARMLEALRGRAASLPAA--LRAALPGEAHTVHRLLGVTPQPGRFRHHA 280 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 GNPL +DVLVVDEASM+DL + +RL+DALP AR++ LGD+DQLA+VEAGAV ++ A Sbjct: 281 GNPLPVDVLVVDEASMLDLALAARLLDALPPEARLVLLGDKDQLAAVEAGAVFAEV--SA 338 Query: 318 NAGFTAERARQLSRLTG------THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 A +L+ LTG A +L S+ L +S+RF +DSGIG+LA Sbjct: 339 ARALDAAEVARLAALTGCSAAAMADELGPPAGAAGALAGSVVWLTRSHRFAADSGIGRLA 398 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA-GYGRYLDLLQARAEPD- 429 A IN G + L A L +A+ GY YL L+ A Sbjct: 399 ADINGGRGETALAWLAAGADPSARWLDDGEARPGAALWQAMETGYAPYLAALRESAAQAT 458 Query: 430 -------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK--RKIHRHPHSRWYEGR 480 AF+ +++L A+ +GP G+ LN + ++++ + + R +RWY GR Sbjct: 459 PPARAVATAFAAFDRFRVLAAVHDGPRGLGALNAHLARWLRAQLAHPLDRGAGARWYPGR 518 Query: 481 PVMIARNDSALGLFNGDIGIALDRGQGTR-VWFAMPDGNIKSVQPSRLPEHETTWAMTVH 539 V++ RND LGL+NGD+G+ L GT VWFA+ G +++ P RLP H+ +A+T+H Sbjct: 519 AVIVLRNDYLLGLYNGDVGLCLPDADGTLAVWFALQGGGFRALPPQRLPAHDDAFALTIH 578 Query: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSG 599 KSQGSEF+ ++LP+Q V++REL+YT VTRA +R+ + + +AA T R SG Sbjct: 579 KSQGSEFEEVLVVLPAQPVRVLSRELLYTGVTRAAQRVCVAGGAAVFAAACERPTRRHSG 638 Query: 600 LAALFSS 606 LAA + Sbjct: 639 LAARLGA 645 >UniRef50_A4VZ41 ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member n=73 Tax=Streptococcaceae RepID=A4VZ41_STRS2 Length = 855 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 135/628 (21%), Positives = 229/628 (36%), Gaps = 99/628 (15%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAA--LLSHDAGEGHVCLPLSRL 58 + QL+E V+ D + L +A D L+ G + Sbjct: 210 ENPYQLVEDVQGLGFTIADRIAENLGIASDSPQRFRAGMLFSLIHRSMETGDTYVE---- 265 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 + L S EL + ++ + G +++ N ++ E Sbjct: 266 ARDLLEATLELLEKSRHTELDPAAVAKELTGLIADDK----VQQEGTKIFDNSLYFAEHG 321 Query: 119 VARFFNEVNHA---IEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALTRRISVISGGP 173 + + A + + +L +S N QK A A+T + +++GGP Sbjct: 322 IHTNLTRLMGKNGFKPFPRADVEAAIAELESISSLTYDNIQKEAIVQAITNPLFILTGGP 381 Query: 174 GTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 GTGKTT + ++A + E C + LAAPTG+A R+ E G Sbjct: 382 GTGKTTVINGIIAVYAILHKIDLTRNREECPVLLAAPTGRATRRMNELTG---------- 431 Query: 228 EQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALP 287 ++T+HR LG G + + + L D ++VDE SM+D + ++L + Sbjct: 432 -------LPSATIHRHLGLVEGQEE--SYRDDYLDADFIIVDEFSMVDTWLANQLFQNIS 482 Query: 288 DHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 +V+ +GD +QL SV G VL D+ Sbjct: 483 SQTQVLIVGDAEQLPSVSPGQVLADLLKIDKLPS-------------------------- 516 Query: 348 LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAM 407 L++ YR DS I LA+ I +G + + D + E A+ Sbjct: 517 -----ITLERIYRQSDDSTIVTLASQIRQGALPSDFREKKADRS----YFEAQNEQIPAL 567 Query: 408 LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK 467 +E + + NE Q+L + G G+ LN + + + Sbjct: 568 IERIVGAAIKS-------------GIPANEVQILAPMYRGAAGIDQLNTMTQALLNPLEE 614 Query: 468 ---IHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFAMPDGN 518 H + +G V+ ND+ +FNGD+G D DG+ Sbjct: 615 GELEFLHNEQAFRQGDRVIHLVNDAEANVFNGDLGYITDLLPAKYTDSKQDEITINFDGS 674 Query: 519 IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLS 578 + + + +AM++HKSQGSEF L + ++ R LVYTA+TR++ +L Sbjct: 675 EVTYPRNEWYKITLAYAMSIHKSQGSEFQVVILPITRTSHRMLQRNLVYTAITRSKSKLI 734 Query: 579 LYADERILSAAIATR-TERRSGLAALFS 605 L + A+ T R++ L F Sbjct: 735 LLGEISAFDYAVKNAGTVRKTYLVPRFQ 762 >UniRef50_B9YCG7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCG7_9FIRM Length = 732 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 133/624 (21%), Positives = 225/624 (36%), Gaps = 103/624 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVA---GDEHPAVTLAAALLSHD-AGEGHVCLPLSR 57 + ++++ V+ D A+++ D AL+ G + Sbjct: 187 ENPYRMVDEVDGIGFATADK-VAMSLGFELEDPRRLEAAMVALVDQMNMQSGDTFVSREG 245 Query: 58 LENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNER 117 L +H + C + E LL ++ R+Y + E Sbjct: 246 L-----AHQMKRQCAGLTYDFDELLESLLLQ---------RRLVEEEGRIYHVDQYDAEV 291 Query: 118 TVARFFN--EVNHAIEVDEALLAQTLDKLFPVSDEINWQKV--AAAVALTRRISVISGGP 173 +A+F VD L LD L Q A + +++GGP Sbjct: 292 QIAQFLTLFPFEELESVDPETLQFELDALQEKLAITYDQAQLDAIHTFFEQDAMILTGGP 351 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GTGKTT V L A ++ + RI APTG+AA RL E Sbjct: 352 GTGKTTVVRALTALFKKLYPYQ--RIACCAPTGRAAKRLAELT----------------- 392 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 D T+H LLG S +PL +D+L++DE SM+D + + L A ++ Sbjct: 393 ETDTFTIHSLLGWDLESNTFTKTEQDPLIVDLLIIDEFSMVDSWLFAALCKASVHVKKLC 452 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD DQL SV G VL D+ L Sbjct: 453 IIGDEDQLPSVRCGCVLKDLITSELFP-------------------------------LV 481 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L++ +R S + LA I +G + D L + + I +++ AL Sbjct: 482 RLERIFRQSEGSDVITLAHQIRQGQTEELDCHG--DVAFFPVGLYEIKDQVINVVQSALN 539 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHR 470 + Q+L + GP G+ LN ++Q + ++ + Sbjct: 540 K-----------------GYDIQDIQVLASKYNGPAGIDRLNAALQQCLNPPEQGKREWK 582 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDR------GQGTRVWFAMPDGNIKSVQP 524 + + EG ++ +N ++NGDIG+ ++ G +G + Sbjct: 583 AGYRTFREGDKILQLKNQPDDDVYNGDIGMLVEIVYANEDEAGKNRLIVDFEGILVEYTS 642 Query: 525 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER 584 L + ++VHKSQGSE+ + + ++ R L+YT VTRA++ L L ++ Sbjct: 643 DNLLNISHAYCISVHKSQGSEYPIVIMPVVRDYGIMLQRRLIYTGVTRAKKSLVLLGEKD 702 Query: 585 ILSAAIATRTE--RRSGLAALFSS 606 L IA++ R + L ++ Sbjct: 703 ALIRGIASQEHHLRSTTLTQRIAA 726 >UniRef50_C6HV36 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HV36_9BACT Length = 578 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 167/608 (27%), Positives = 260/608 (42%), Gaps = 75/608 (12%) Query: 7 LLEAVEHKQLRPLDVQFALTVAGDEHPA-------VTLAAALLSHDAGEGHVCLPLSRLE 59 + A+ ++L +D A T+ P + L L S EGH L Sbjct: 19 IHAALTLERLAFVDRALAGTLLRLGAPRDSTSADVLALGTVLASSAPREGHTLFDL---- 74 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQ-AVSRGDEPTPMILCGDRLYLNRMWCNERT 118 +E + + WE L + V R + P P+++ G LYL R W E Sbjct: 75 GSEQEPFPPLPLPPSLPPRREWEALLSSLPSVVGRPEAPAPLVVEGGGLYLYRYWRAEVR 134 Query: 119 VARFFNEVNHAIEVDE----ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 VAR + + + L+++FP + + + AA AL R+ V++GGPG Sbjct: 135 VARLLADRLAGEREESVGEGTSRERLLEEIFPEAGGAS--RTAALAALGSRLLVLTGGPG 192 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 TGKT T A+ L+ R+ AAPTGKAAAR+ E+L + + Sbjct: 193 TGKTWTAAR--LLLLFRRLVPGIRVVSAAPTGKAAARMGEAL---------AEVLPPELA 241 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 + TLHRLLGA R L D++++DE SM+DL +M L+ AL R++ Sbjct: 242 VPSMTLHRLLGASLRGIAPRRGE--FLPWDLVLLDELSMVDLLLMESLLSALSPRTRLVL 299 Query: 295 LGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCL 354 +GD+DQL+ V AGAV+GD+C + + L + Sbjct: 300 VGDQDQLSPVGAGAVMGDLCRAL------------------------SAQEKGVPRGLVV 335 Query: 355 LQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 L ++YR + + + + GD +F++ D+ + G ++E Sbjct: 336 LSRNYRQRESGLLQEFSRKVAEGDGEGALRLFERGDPDLVFAPVAEGWPENLLVEG---- 391 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHS 474 L + ++ + L R+GP G + +E+ + Sbjct: 392 ----FSPLATSSSDGEALERLGGFMALSPFRDGPMGALRGSRHLERVFSR-----LRGSR 442 Query: 475 RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRL-PEHETT 533 + P MI +N GL NGD+GI G R+ FA P ++ P R+ P ET Sbjct: 443 GFRA--PAMILQNSYDTGLMNGDLGILS----GERLVFAAPGRPEPAILPLRMAPPWETA 496 Query: 534 WAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR 593 + MTVHKSQGSEFD L+L + P++TR L+YTA TRA++ L ++A + + Sbjct: 497 FVMTVHKSQGSEFDRVCLLLGGELHPLLTRRLLYTAATRAKKGLVVWASPESFLSMVRLS 556 Query: 594 TERRSGLA 601 R SGL Sbjct: 557 PARSSGLE 564 >UniRef50_Q12LP3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Shewanella denitrificans OS217 RepID=Q12LP3_SHEDO Length = 767 Score = 338 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 181/419 (43%), Positives = 243/419 (57%), Gaps = 36/419 (8%) Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 +L L IPE+ASTLHRLLG P S + RH NPL LD+LVVDEASM+DLPM Sbjct: 349 SLLALKQLIASLSLIPEEASTLHRLLGVIPNSHKFRHDEHNPLRLDLLVVDEASMVDLPM 408 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG----------FTAERARQ 328 M +L+ ALP AR+I LGD+DQLASVEAGAVL DICA A ++ E+A Sbjct: 409 MHKLLSALPKDARLILLGDQDQLASVEAGAVLADICAGLKAPASSAAQWQMRYSHEQALL 468 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 L LTG + +A L DSLC+L S+RF D+GIG LAAA+N D A++ V+QQ Sbjct: 469 LEALTGEKLTRYIHPQAR-LGDSLCILFHSHRFKGDAGIGLLAAAVNHADIKAIRQVWQQ 527 Query: 389 DFTDIEKRLLQ----SGEDYIAMLEEALAGYGRYLDLLQAR------------AEPDLII 432 ++ Q S + A+L +++ YG YL L+ P II Sbjct: 528 QHQELNWFEHQADSNSAQGKDALLALSVSAYGDYLSLIADNKRQFEITDASALHSPKTII 587 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 +FN+Y++LCA+R G FGV G+N + Q ++Q++ I P +Y GRP++IA ND LG Sbjct: 588 DSFNQYRILCAMRAGEFGVDGINAALTQALKQRKLID--PKQEFYLGRPIIIASNDYNLG 645 Query: 493 LFNGDIGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 LFNGDIG+ L F DG++ VQP+RLP H+T +AMTVHKSQGSEF Sbjct: 646 LFNGDIGLILQDKDQPTRLMAHFIKADGSVLKVQPARLPSHDTCYAMTVHKSQGSEFAKV 705 Query: 550 ALILPSQRT----PVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALF 604 + +LP + + ++T+EL+YTA+TRA+ + + + A T R SGLA Sbjct: 706 SFVLPPKPSTAQWQLLTKELLYTAITRAKAQFYCLGSQPVFERASRQVTLRASGLARRL 764 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 25/244 (10%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAG--------DEHPAVTLAAALLSHDAGEGHVCL 53 L+++L E + L PLD FAL++ E L ALLS H CL Sbjct: 33 SLRERLKYWQELRLLTPLDRHFALSLCDIEGLDNHSSEAELFMLICALLSRQLSNQHSCL 92 Query: 54 PLSRLENNEASHPL---LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLN 110 LS+++ S L E L AV + + TP+IL LYLN Sbjct: 93 VLSQIDLANPMMEECYRAPASCSINLSLTELEHQLSQFSAVGQAGDNTPLILDTGCLYLN 152 Query: 111 RMWCNERTVARFFNEVNHAIEVDEA---------LLAQTLDKLFPVSDE--INWQKVAAA 159 + E VA N + + + + Q LD LFP ++ I+WQKVA A Sbjct: 153 KYHFFETHVAHKLNRLAQTELIATSNAFDAGTLNQVRQQLDCLFPAAENAQIDWQKVATA 212 Query: 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 ALT+ ++VI+ G T + L+ + I+L APTGKAAARL+ES+ + Sbjct: 213 TALTKALAVIT---GGPGTGKTTTVTKLLLLLQTQSAMNIKLVAPTGKAAARLSESIKDS 269 Query: 220 LRQL 223 +L Sbjct: 270 KAKL 273 >UniRef50_P96919 Exodeoxyribonuclease V alpha chain n=27 Tax=Actinomycetales RepID=EX5A_MYCTU Length = 575 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 207/601 (34%), Positives = 298/601 (49%), Gaps = 56/601 (9%) Query: 12 EHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLL 68 + L DV A + AG+ V LA A+ G VC+ L + L Sbjct: 21 QAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLLSIARVAGHDDL- 79 Query: 69 ATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH 128 + +W + AS ++ P + LYL+R W E V ++ Sbjct: 80 -----PWPDPADWLAAVRASPLLADP--PVLHLYDDRLLYLDRYWREEEQV---CADLLA 129 Query: 129 AIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 + L +LFP + Q+ AA +AL++ ++V++GGPGTGKTTTVA+LLA + Sbjct: 130 LLTSRRPAGVPDLRRLFPTG--FDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLALV 187 Query: 189 IQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLG 245 + A+ R RI LAAPTGKAAARL E++ + + +L TD + A TLHRLLG Sbjct: 188 AEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRA-RLGDLHAVTLHRLLG 246 Query: 246 AQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVE 305 A+PG+ R R N L +V+VVDE SM+ L +M+RL +A+ AR+I +GD DQLASVE Sbjct: 247 AKPGA-RFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASVE 305 Query: 306 AGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDS 365 AGAVL D+ + + L+ S+RFG Sbjct: 306 AGAVLADLVDGFSV---------------------------RDDALVAQLRTSHRFGK-- 336 Query: 366 GIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425 IG LA AI GD AV + + IE ED L L + L Sbjct: 337 VIGTLAEAIRAGDGDAVLGLLRSGEERIEF---VDDEDPAPRLRAVLVPHALRLREAALL 393 Query: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA 485 D+ + +E++LLCA R+GP GV N R++ ++ ++ P + WY GRP+++ Sbjct: 394 GASDVALATLDEHRLLCAHRDGPTGVLHWNRRVQAWLAEETGQP--PWTPWYAGRPLLVT 451 Query: 486 RNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSE 545 ND L ++NGD G+ L G R + G V RL + ET AMT+HKSQGS+ Sbjct: 452 ANDYGLRVYNGDTGVVLAGPTGLRAVISGASG-PLDVATGRLGDVETMHAMTIHKSQGSQ 510 Query: 546 FDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFS 605 D +++P + + ++TREL+YTAVTRA+R++ + E + AAIA R R SGL Sbjct: 511 VDEVTVLMPQEDSRLLTRELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 Query: 606 S 606 S Sbjct: 571 S 571 >UniRef50_Q30PF5 ATPase n=2 Tax=Campylobacterales RepID=Q30PF5_SULDN Length = 745 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 118/638 (18%), Positives = 224/638 (35%), Gaps = 119/638 (18%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTLAAA----LLSHDAGEGHVCLPLSRLENNEASHP 66 + + D AL + + +++A LL++ +G+ C+ L Sbjct: 182 INSIGFKRADE-LALKMGVKKDDENRISSAMDYVLLNYCEQQGNSCVAKEILFFELDELL 240 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 + + L + V R E + +++ +R+ R++ E+ + F Sbjct: 241 TFSD-----------KSYLYEASLVERVSEGSIVLMKNERVSPARLYDAEKYLYDEFKRR 289 Query: 127 NHAIEVDEALLAQTLDKLFPVSDEI--NWQKVAAAVALT-RRISVISGGPGTGKTTTVAK 183 +D + LD D + QK A I + G GTGK+TT Sbjct: 290 AK---LDNGGFTKDLDLFLSEHDLKLGDEQKEALKKINEGSSILFLVGYAGTGKSTTSRS 346 Query: 184 LLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 +L L D + I A +G A+ R+ ++ G +++T+ L Sbjct: 347 ILDLLNTKYD--KKEIITCALSGIASQRIADTTG-----------------YESATIQSL 387 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 L ++ + V+++DEASMI+ + +RL+ + A +I +GD QL Sbjct: 388 L--------VKFEERDEFPYSVVLIDEASMINSSLFARLVRKVSKSALLIVVGDDAQLPP 439 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 + AG VL D+ A + L K YR Sbjct: 440 IGAGNVLSDVLTLCLAP-------------------------------IVKLTKIYRQSE 468 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL----------------QSGEDYIAM 407 D I +A I G K + +DF ++ + Q E+ + Sbjct: 469 DKAITVIANDIRLGVVPEYKREY-EDFEFVDVSMQNYYALKNQLTQAELSSQREENSAQI 527 Query: 408 LEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK-R 466 + ++ + R I + N +Q++ ++ G G LN ++ + + Sbjct: 528 VAVIAHKVVESIEKARYRLSNKQIKEYLNYFQVITPMKGGTLGSNNLNIVLQNYFNPNPK 587 Query: 467 KIHRHPHSRWYEGRPVMIARND----------------SALGLFNGDIGIALDRGQGTRV 510 K + + V+ +N+ + +FNG G+ + Sbjct: 588 KCVKKGGVEFRLMDKVVHTKNENMTSWSSEGFKNSEDSAQRRIFNGMSGLLFKIEEDDEQ 647 Query: 511 WFAMP--DGNIKSVQPSRL-PEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 F + + + L ++A+T+HK QG E+D + + + +L+Y Sbjct: 648 AFVFYPNEDVVVVYEYEELRSHLMLSYALTIHKVQGMEYDIVVIPMSFSHYIMHNTKLIY 707 Query: 568 TAVTRARRRLSLYADERILSAAIATR--TERRSGLAAL 603 TAVTRA+ + L + +A T R + L L Sbjct: 708 TAVTRAKHKCILVGESMAFESACKKLDITARDTVLLEL 745 >UniRef50_A2C8A4 Possible exodeoxyribonuclease V 67 kD polypeptide n=2 Tax=Prochlorococcus marinus RepID=A2C8A4_PROM3 Length = 576 Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats. Identities = 155/591 (26%), Positives = 249/591 (42%), Gaps = 64/591 (10%) Query: 17 RPLDVQFALTVAGDEHPA-VTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEI 75 R L + + L G + L L+ + + Sbjct: 15 RALHQTLLRRLPPKASSVHLEDLVNALMDALARGELQLNLT--------AMSPPQELKAM 66 Query: 76 GELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEA 135 G + + LLAS + +PM+L G++L R + V + ++ ++ + Sbjct: 67 GWPEAHCQALLASGWLE--GAASPMVLNGNQLSWRRWHGDMDAVIKELINRSNVVQA-TS 123 Query: 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE 195 + + Q+ A + ++SGGPGTGKT+T+ ++LA + + Sbjct: 124 ICTTPSHHPALLDGLNPEQQAAVEAIDNHGVVLLSGGPGTGKTSTIVQMLARAVTL--RP 181 Query: 196 RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRH 255 RI LAAPTGKAA RL E++ K L +P T Q STLHR L A+PG Sbjct: 182 GLRIGLAAPTGKAARRLEEAVRKGLEAIPPTQRQ-ALTSLPCSTLHRWLQARPGG--FGR 238 Query: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 H +PL LD+LV+DE SM++L +M L+ ALP ++++ +GD DQL V +GAV + Sbjct: 239 HQQHPLMLDLLVIDEMSMVELSLMQALLSALPIDSQLVMIGDPDQLPPVGSGAVWHQLQQ 298 Query: 316 YANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 A L +L R SL L + D G+ ++ Sbjct: 299 ADIRQQFNHGAIHLHQLYRN-------------RGSLATLSRVL---CDQGLSAFWQQLS 342 Query: 376 RGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA---------GYGRYLDLLQARA 426 K+A Q + + + + L+Q +++ L+ A Y + Sbjct: 343 LLPKSANVEQHQCNLSSMPRFLVQHLQEHSRTLQRLTAELMLELPDDAYTSTMLNTNLAV 402 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIAR 486 + ++ + +LC R G +GV ++ + + RW G PVM Sbjct: 403 AAESLLDSLERLMVLCPKRRGFWGVDDVHRAL------LGQSLEAGVMRWPLGTPVMCCE 456 Query: 487 NDSALGLFNGDIGIALDRGQGTRVWFAMPDGN----IKSVQPSRLPEHETTWAMTVHKSQ 542 N + LGL NGD+G+ + +G R+ F + + + P+RL E A+TVHKSQ Sbjct: 457 NQAELGLANGDVGLVVGQGDNLRILFRVISEQGGLTTRFIHPARLSVVEPALALTVHKSQ 516 Query: 543 GSEFDHAALILPS------------QRTPVVTRELVYTAVTRARRRLSLYA 581 GSE DH L+ P + R+L+YTA+TRAR+R+ L Sbjct: 517 GSEADHVILLWPEIKAVSATSADGFESASSFERKLLYTAITRARQRVDLVT 567 >UniRef50_C5NYT1 Helicase, RecD/TraA family n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYT1_9BACL Length = 777 Score = 337 bits (864), Expect = 8e-91, Method: Composition-based stats. Identities = 121/622 (19%), Positives = 243/622 (39%), Gaps = 98/622 (15%) Query: 7 LLEAVEHKQLRPLD-VQFALTVAGDEHPAVTLAAALL--SHDAGEGHVCLPLSRLENNEA 63 L++ ++ + +D + +A ++ + S G+ + + L N Sbjct: 190 LIKDIKGINFKTVDKIAETNEIAANDRERILYGFIYTINSFCFSTGNTYISKNTLLYNTF 249 Query: 64 SHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFF 123 + + + +E +L+S + +I DR++L ++ +E ++ Sbjct: 250 NILYSSR------NIAVAKEDILSSY--DYALDSGKLIEIEDRVFLPEIYYSEYSIYSDI 301 Query: 124 NEVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGGPGTGK 177 ++ +E D + LDK ++ Q A + ++++GGPGTGK Sbjct: 302 SKRLE-LEDDFDISDSLLDKYIEEVEDELEISYDIVQIAAIKNCIKNNFAILTGGPGTGK 360 Query: 178 TTTVAKLLAALIQ--------MADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 TT + ++ + + D R + L APTGKAA R++ES G Sbjct: 361 TTIILAVIKIFQKIKNYSIHDLLDESRSILTLCAPTGKAAKRMSESTGFY---------- 410 Query: 230 KKRIPEDASTLHRLLGA-QPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPD 288 AST+H+ +G + + +++++DE+SMID+ +M L+ + Sbjct: 411 -------ASTIHKAIGWSTEDENMEEFVSEKHIKSELVIIDESSMIDVFLMYNLLKIINK 463 Query: 289 HARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASL 348 A++I +GD DQL S+ G VL D+ Sbjct: 464 DAKIILVGDNDQLPSIAPGNVLNDLINSK------------------------------- 492 Query: 349 RDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAML 408 S L K +R +++ + +I +L++ +D + Sbjct: 493 AISTVKLNKIFRQSE---------------HSSIINISHSIKNNIPFDVLENFDDKEFI- 536 Query: 409 EEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI 468 A ++++ A + + A Q+L + +G G+ +N I+ + Sbjct: 537 ---SANKNEMINVISAIYDDLIKGSAKENIQILAPIYKGTSGINEINMAIQSRFNDNEEQ 593 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR--VWFAMPDGNIKSVQPSR 526 + + VM N +FNGDIG + DGN + + + Sbjct: 594 IEYGELIYKVNDRVMQLVNRPEDNIFNGDIGYIEQIYKEGNKFKIVIDYDGNYVTYEKTE 653 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L + ++A ++HK+QGSEF++ + ++ + L YTA+TRA+++L L D ++ Sbjct: 654 LNQITLSYACSIHKAQGSEFENVIIPFIDNYNFMLNKNLTYTAITRAKKKLILCGDSKVF 713 Query: 587 SAAIA--TRTERRSGLAALFSS 606 +I R++ L F++ Sbjct: 714 YKSIEPTNVVTRQTSLEWFFTT 735 >UniRef50_C4GL20 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GL20_9NEIS Length = 567 Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 191/597 (31%), Positives = 275/597 (46%), Gaps = 55/597 (9%) Query: 18 PLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGE 77 ++ FA +A V L G+ + +S+ E + + Sbjct: 17 SVNRLFAQ-IAPAAAETVAPFVERLFAALSHGNTFIYISQAEADALAQAAP--------- 66 Query: 78 LQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALL 137 + D +P++L G RL++ + W E+ +A ++ Sbjct: 67 -------------LVGSDASSPVVLHGRRLFIAKYWHLEKQLAAEIQRLSAHTPRQPEKP 113 Query: 138 AQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 L + D Q+ AAA+AL + +ISGGPGTGKTTTVAKLLA L + Sbjct: 114 LAELLANWFADDTSRDQRAAAALALLKNFVLISGGPGTGKTTTVAKLLALLHRQ---PAP 170 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKR--IPEDASTLHRLLGAQPGSQRLRH 255 R L APTGKAAARLTESL +A +P D + +R T+HRLLG +P + + Sbjct: 171 RTALVAPTGKAAARLTESLHRASAAIPDLDAEAQRYLASLTGQTVHRLLGLKPPQMQPEY 230 Query: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICA 315 HA NPL LD +++DEASM+D ++ +L+ ALP H RVI LGD DQL SV AGAVL + Sbjct: 231 HAHNPLPLDCVLIDEASMMDNHLLYQLLAALPSHCRVILLGDADQLPSVGAGAVLDAL-- 288 Query: 316 YANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 N E L +L +L + L S+RF + SGIG LA A+ Sbjct: 289 SHNHQMQPETTTALRQLLPDV------EHFPTLAEQHARLTISHRFHAQSGIGNLARAVQ 342 Query: 376 RGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAF 435 +G +A + + L + A++ + + Y ++A Sbjct: 343 QGSASAWHAI-----AEHPNELFAQPRNLAALVAQLYQHHTAYWQAIRAGNLA-AAFAEQ 396 Query: 436 NEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFN 495 + +L ALR +N +QQ H P S WY G+ +MI RN + L+N Sbjct: 397 SRLIVLTALRH---DAEHINNLYRTLLQQHG--HTRPQSPWYAGQIIMITRNAPSQQLYN 451 Query: 496 GDIGIAL---DRGQGTRVWFAMPDGN---IKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 GDIGI + + G R F N +S+ SRLPEHET +A+T HKSQGSE++ Sbjct: 452 GDIGIIMQPENDGNDLRACFPSESANGSGYRSIPLSRLPEHETAYAITTHKSQGSEYEQV 511 Query: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 P+Q +R L+YTA+TRA+++ + DE AA A R S L Sbjct: 512 WFAAPAQAPY--SRALLYTAITRAKQQFVYWGDEAGFQAACAHNEHRNSALGMFLKE 566 >UniRef50_A9BB03 Possible exodeoxyribonuclease V 67 kD polypeptide n=1 Tax=Prochlorococcus marinus str. MIT 9211 RepID=A9BB03_PROM4 Length = 574 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 138/576 (23%), Positives = 232/576 (40%), Gaps = 64/576 (11%) Query: 31 EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQA 90 P + +L G + + L T V G + S Sbjct: 30 SQPHLQDLINILLESLSRGEIYISLDE--------SKPPTEVKAPGWPTEHLRAIKQSGW 81 Query: 91 VSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE 150 + + +P+IL +RL R + + + + ++ A++ D + Sbjct: 82 LEQST--SPIILENNRLGWYRWDYEMKGIIKDLIKKSNQRPK-LAIIEVDKDAIKSTVKL 138 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 + Q +A + + ++SGGPGTGKT+T+ ++L ++ RI LAAPTGKA Sbjct: 139 NSEQLLALESITSHNLVLLSGGPGTGKTSTIVEMLR--KSLSIDLELRIGLAAPTGKATR 196 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 RL ESL ++ +L + K TLHR L A + + N L LD+LV+DE Sbjct: 197 RLQESLQSSIEELNP-QVKDKFYRIPCLTLHRWLKA--NERGFSKNETNQLDLDLLVIDE 253 Query: 271 ASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLS 330 SM+D+ +M +++ALP ++++ +GD +QL V +GAV ++ N LS Sbjct: 254 MSMVDISLMRGVLNALPKQSQLVLVGDPNQLPPVGSGAVWNELLKSQNQEILGSSRINLS 313 Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390 ++ R + LL K R DS I ++ Q Sbjct: 314 KVYRN-------------RGQIALLAKMIR--EDSF-NVFWNQIQNLPLSSNVKSHSQKK 357 Query: 391 TDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEP----------DLIIQAFNEYQL 440 + LL+ + A +++ L+ L+ + +++ E + Sbjct: 358 NSMPSFLLEKLKAKQAEIQKILSNSLETLNTVNTYPATINNPEFDNTIKKLLKTLEELAV 417 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 LC R G + V +++ + W EG PV+ N LGL NGDIG+ Sbjct: 418 LCPRRFGLWSVEHVHQAL------LGNSLEEGVMHWPEGTPVICGENQQELGLSNGDIGV 471 Query: 501 ALDRGQGTRVWFAMPDG----NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQ 556 R+ F + K + PSRL + + +A+T+HKSQGSE + L+ P Sbjct: 472 IFGSNNERRLIFRVITEKQTLEPKLIHPSRLRKVDPAYALTIHKSQGSEVNDVVLLWPDD 531 Query: 557 RT------------PVVTRELVYTAVTRARRRLSLY 580 + L+YTA+TRA+ + L Sbjct: 532 SYICDQQIKQDKRNENYDKSLMYTALTRAKNKFDLI 567 >UniRef50_Q04EW7 ATP-dependent DNA helicase, RecD/TraA family n=2 Tax=Oenococcus oeni RepID=Q04EW7_OENOB Length = 766 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 144/621 (23%), Positives = 234/621 (37%), Gaps = 101/621 (16%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSRL 58 + QL+ V+ + Q A ++ + +LL+ G L +L Sbjct: 182 ENPYQLIGQVDGFTFQDA-QQIARFNNFNHQEDQIDGAVIFSLLTAAQESGDTYLSKDQL 240 Query: 59 ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERT 118 N + + +E L +++ R + + + R+ L + E + Sbjct: 241 VKNVSELLESGPEFFD-------QEILTEIESLQRKGQ---LFISDSRVSLAEYYRLEES 290 Query: 119 VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 V V+ + Q +K S + QK A +I++++GGPGTGKT Sbjct: 291 VIDDLKRVSKNKQRSFTGKLQLSNK----SLLDDKQKKAVESVFKNQITILTGGPGTGKT 346 Query: 179 TTVAKLLAALIQMADGERCR---------IRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 T + ++ + A+ + LAAPTG+AAAR+TE G+ Sbjct: 347 TVIKTVIQQWERAAEKSNSENKFKQTKKLVLLAAPTGRAAARITEVTGR----------- 395 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 A T+H LLGA N L ++V+DE SM+DL + + A+P+ Sbjct: 396 ------QAVTIHHLLGATSDG-YFDFDENNQLQAGLIVIDEMSMVDLQLFQHFLRAVPNG 448 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 R++ +GD+DQL SV AG +L D+ Sbjct: 449 CRLLLVGDKDQLPSVGAGQILTDLILSDQ------------------------------- 477 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLE 409 LQ ++R SGI L+ + RG D + Q + +L Sbjct: 478 FKTIELQINHRQTKGSGIDLLSQDLKRGIVDQKMFENGNDISFFSLEEYQLEQGISRILS 537 Query: 410 EALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH 469 A+ + + Q++ V LN+ ++ + Sbjct: 538 AAMRFGIKK-----------------EDLQIITPTNR---LVELLNQLARPYLIDRDIRI 577 Query: 470 RHPHSRWYEGRPVMIARNDSALGLFNGDIGIALD--RGQGTRVWFAMPD--GNIKSVQPS 525 + + G VM N+ G+ NGDIG + R F D GN + + Sbjct: 578 DDLSTAFLAGDRVMQQENNPEKGVNNGDIGYVIATQLSGPLRSRFISVDFLGNTVMYKEN 637 Query: 526 RLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERI 585 + + ++A TVHKSQGSEF + +L S VTR LVYT VTRA + L L +R Sbjct: 638 EINQLRLSYASTVHKSQGSEFRNVIFVLTSTFNNFVTRNLVYTGVTRAEKSLILIGSQRA 697 Query: 586 LSAAIATRTE-RRSGLAALFS 605 + AI T R++ L L + Sbjct: 698 FTDAINNPTPLRQTNLVKLLN 718 >UniRef50_Q97JX9 Exodeoxyribonuclease V, Alpha subunit, RecD n=1 Tax=Clostridium acetobutylicum RepID=Q97JX9_CLOAB Length = 726 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 125/628 (19%), Positives = 219/628 (34%), Gaps = 113/628 (17%) Query: 2 KLQKQLLEAVEHKQLRPLD-VQFALTVAGDEH-PAVTLAAALLSHDAGEGHVCLPLSRLE 59 K +L ++ + +D + ++ + D + L G + + Sbjct: 186 KNPYKLYMDIKGFGFKTVDSIALSMGIEPDSNFRTKAAILYCLEQKEQNGDTYAFIEDIH 245 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTV 119 + ++ + + L + RL W E+ + Sbjct: 246 QQVEKLLNI--------KINDIKNYL----------DKEYYYFDVLRLAKRTTWETEKDI 287 Query: 120 ARFFNEVNHAIEVDEALLAQTLDKLFPVSDEI------NWQKVAAAVALTRRISVISGGP 173 + I + L + L P + I + QK I V++G Sbjct: 288 ---SVRLKEKINNSQKLFTNNVIHLIPEIERILRIKYDDKQKELFYKINENNILVLTGFA 344 Query: 174 GTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRI 233 GTGK++ + LL + D + +L +PT KAA R+ E GK Sbjct: 345 GTGKSSVLNGLLN----LFDKKNITYKLMSPTAKAAKRMEECTGK--------------- 385 Query: 234 PEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 AST+HR LG G + + NP DV+++DE SM+D+ + ++ + + +++ Sbjct: 386 --KASTIHRALGLAEG--KFLVNEKNPFAEDVIIIDETSMVDIYLFLAVLKGIKNTTKLL 441 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 LGD QL S+ AG VL D+ Sbjct: 442 CLGDYGQLESISAGNVLFDMIQGGIP--------------------------------CV 469 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALA 413 L+K +R DS + + I GD + K L+ G D L + Sbjct: 470 KLEKIFRQKEDSSLLNVITNIRNGDNP---------LKNTHKTYLELGRDCKFWLGKKEQ 520 Query: 414 GYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ-QKRKIHRHP 472 R L + + + + +LC +++G GV LN+ +++ Q + + Sbjct: 521 TLSRVLLCYKECLK----HFSREDIMVLCPMKKGNSGVNKLNQELQKIANSQNTEELKLK 576 Query: 473 HSRWYEGRPVMIARNDSA-------------LGLFNGDIGIALDRGQGTRVWFAMPDGNI 519 + + VM +ND G+FNGD G + + D I Sbjct: 577 DCAYKKEDLVMHIKNDYNANIFSEDCKDTIAKGIFNGDAGKIEKIDLENQKLYVSYDSGI 636 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 S L E ++A+T+HK QGS+ + L ++ R L+YTA +R L Sbjct: 637 VEYDNSNLNELMLSYALTIHKVQGSQSKVVIVALDMSHYKMLKRSLLYTAASRCVELLIF 696 Query: 580 YADERILSAAIATR--TERRSGLAALFS 605 D + S A+ T + + L L Sbjct: 697 ICDPKAFSIALNNNQVTHKNTFLGELLK 724 >UniRef50_B2I7Y3 Exodeoxyribonuclease V, alpha subunit n=10 Tax=Xanthomonadaceae RepID=B2I7Y3_XYLF2 Length = 639 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 226/627 (36%), Positives = 308/627 (49%), Gaps = 43/627 (6%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLEN 60 L + LR LD A ++ + V AAAL S GH + L+ Sbjct: 1 MSLLAALNQAGVLRTLDDALARSLCRLDPKTPDKVAAAAALASMAVAHGHAGVDLAH--- 57 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP-------TPMILCGDRLYLNRMW 113 LLA + + W L AS+ V+ E P++L LYL R Sbjct: 58 ----PGLLAGEMFDWPSAAEWVHLLRASRWVAEPSEGEAPAPTGQPLVLEQGVLYLRRYR 113 Query: 114 CNERTVARFFNEVNHA--IEVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVIS 170 ER +A + A + A +A LFP + + Q +AAA+AL R + +++ Sbjct: 114 EYERRLAIGLRRIAAARLPPAESAAVATVFAALFPQARAGQDRQALAAALALQRALLLVT 173 Query: 171 GGPGTGKTTTVAKLLAALIQMADGER---CRIRLAAPTGKAAARLTESLGKAL---RQLP 224 GGPGTGKTTT+A+LL + A + RI LAAPTG+AA R+ ESL A Sbjct: 174 GGPGTGKTTTIARLLLLRVAQARQQGQASLRIALAAPTGRAAERMAESLRAAAGHVSAAG 233 Query: 225 LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLID 284 +P AST+HRLLG P + R RH NPL DV+VVDEASM+DLP+M +L+D Sbjct: 234 GDAALFAALPSGASTVHRLLGVIPDTPRFRHCEDNPLPYDVIVVDEASMMDLPLMCKLVD 293 Query: 285 ALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF-----TAERARQLSRLTGTHVPA 339 A+ D ++I LGD DQL SVEAG VL I A A +G A+ L V A Sbjct: 294 AVADGTQLILLGDPDQLPSVEAGDVLAGILAAAGSGEVLDVADAQVLAPLLGAPSAAVVA 353 Query: 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ 399 L LQ S+R G D + LA A+ GD TAV + ++ R +Q Sbjct: 354 ECHVVRGGLHGHRVHLQHSHRQGEDLALAPLAEAVRLGDATAVLGMLRRG----TLRGVQ 409 Query: 400 SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 E + A + L A ++P + A +LL ALREGP G AG+N RIE Sbjct: 410 FHEGVLDPCVGAGQVLLAHWRALAALSDPVQALAAAGRLRLLTALREGPQGAAGINARIE 469 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR-VWFAMPDGN 518 + + ++ GR +++ S LFNGDIG+ L GT WF+ G Sbjct: 470 RLLGG------GGVDGYFHGRLLLMTETSSRQRLFNGDIGVCLRDDDGTMWAWFSGAGGE 523 Query: 519 -IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRL 577 +++ P+ LP HE+ +AMTVHK+QGSEFD L LP Q + V++REL+YT +TRAR L Sbjct: 524 GVRAFAPAALPAHESAFAMTVHKAQGSEFDTVWLQLPRQESRVLSRELIYTGLTRARHGL 583 Query: 578 SLYADERILSAAIATRTERRSGLAALF 604 + E +L AA+A + R SGLA Sbjct: 584 HVAGSESVLCAALARQAVRVSGLAWRL 610 >UniRef50_Q7VBJ9 ATP-dependent exoDNAse alpha subunit n=1 Tax=Prochlorococcus marinus RepID=Q7VBJ9_PROMA Length = 564 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 145/576 (25%), Positives = 232/576 (40%), Gaps = 61/576 (10%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQ 89 D P + LL G + L + +E + G + LL S Sbjct: 27 DSSPHLEDLVKLLMESLSRGEIYLKIDEVEAQI--------NLKGSGWPNKHMKVLLDSG 78 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSD 149 ++ +PM+L G+ L R + V + + + +TL + S Sbjct: 79 WIN--KYNSPMVLQGNYLSWRRWSEEMQNVIDQLTYKSFQQRIKKDQNCETLTR-QGFSA 135 Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209 Q A + ++SGGPGTGKT T+ +L + ++ +I L APTGKA Sbjct: 136 LNLEQLSAVEAISNHNLILLSGGPGTGKTHTIVNML--IKALSIHPNLKIGLGAPTGKAT 193 Query: 210 ARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVD 269 RL E++ ++ L + + K TLHR L A G + N L LD+LV+D Sbjct: 194 RRLEETIQQSSLNLD-EEYKIKLAKIPCLTLHRWLQAVEG--KFLKGKKNKLQLDILVID 250 Query: 270 EASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQL 329 E SM+DL +M +++ALP +++I +GD DQLA V GAV + + A L Sbjct: 251 EMSMVDLSLMQAVLNALPKESQLILVGDPDQLAPVGNGAVWHKLQEESTREIFKHCAIHL 310 Query: 330 SRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQD 389 S+L T R + L K R + G+ + ++ V Sbjct: 311 SKLYRT-------------RGEVASLAKVIR---NKGLSCFFMELKNIPSSSNVNVLSST 354 Query: 390 FTDIEKRLLQSGEDYIAMLEEALAGYGRYLD-------LLQARAEPDLIIQAFNEYQLLC 442 I +++ +++ L YL + ++ E +LC Sbjct: 355 KEVIPIQIVNKIKEHQNKLRSHTKEARVYLRSNPTGNLHSYNQKLTSRVLDCLEELIVLC 414 Query: 443 ALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL 502 R G +G+ +++ I S W EG PV+ N S + L NGDIG+ + Sbjct: 415 PRRHGLWGIEHIHQTI------LGNQSDEGVSSWPEGTPVICGANQSEIHLANGDIGVVI 468 Query: 503 DRGQGTRVWFA---MPDG-NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPS--- 555 Q ++ F + G + + P+R+ E +A T+HK+QGSE +H + P Sbjct: 469 GEDQNKKLLFRVNSLEKGITTQLIHPARVKSLEPAFATTIHKAQGSEAEHVICLWPDPIN 528 Query: 556 ---------QRTPVVTRELVYTAVTRARRRLSLYAD 582 R R L+YTA+TRAR +L L Sbjct: 529 TKESANNELIRNENYERRLIYTAITRARTKLDLVIS 564 >UniRef50_Q0IBA7 Exodeoxyribonuclease V, alpha subunit n=3 Tax=Synechococcus RepID=Q0IBA7_SYNS3 Length = 559 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 141/540 (26%), Positives = 229/540 (42%), Gaps = 46/540 (8%) Query: 51 VCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLN 110 L + + + G + E L+AS + + ++L + L Sbjct: 42 TALSRGEISLQLHDGAKVPDGIETDGWPRVHREALVASGWLD--GDQAVLVLNHNSLSWR 99 Query: 111 RMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVIS 170 R + + + T +L +D Q+ A + ++S Sbjct: 100 RWHGAMQELELELQRRCFQAPIHATNHGATTSRLSNNNDLSPEQQAAVRAIDRYGVVLLS 159 Query: 171 GGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 GGPGTGKT+TV +L L + R RLAAPTGKAA RL +++ Sbjct: 160 GGPGTGKTSTVLHML--LRAFEKQPKLRARLAAPTGKAARRLQDAIRSN----------P 207 Query: 231 KRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA 290 +TLHRLL A+PG H NPL LD+L+VDE SM+DL + L+ ALP H Sbjct: 208 ITATLPCTTLHRLLEARPGG--FGRHRRNPLELDLLIVDEMSMVDLELGRALLSALPTHC 265 Query: 291 RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD 350 ++I +GD QL + GA+ + + A L+ + +L Sbjct: 266 QLILVGDSAQLPPIGTGAIWQHLQEPNQNRRFKDGAITLTEVYRNR---------GALAQ 316 Query: 351 SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE 410 LL+ D G+ + ++ KT+ TV I + + + ++ L+E Sbjct: 317 MSALLR-------DQGLIPFWSQLSSLPKTSNITVSYSQTRQIPEAVHAALTRHLDHLKE 369 Query: 411 ALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR 470 + G + + ++ + +LC R GP+GV +++ + + Sbjct: 370 KASALGINAHGQPDQQQAQDLLNILDTLMVLCPRRRGPWGVDAVHQNL---------LDG 420 Query: 471 HPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFA--MPDGNIK--SVQPSR 526 RW G PV+ + N LGL NGD+G+ + G R F P G + P+R Sbjct: 421 SEPQRWPSGLPVLCSENQPELGLANGDLGVMVGEGVQQRALFLCSDPSGESRHALYHPAR 480 Query: 527 LPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERIL 586 L E A+T+HK+QG E D L+ P+ ++ L+YTA+TRA+++L L+AD + L Sbjct: 481 LRHLEPALALTIHKAQGCEMDKVLLLWPNFDDRQIS-SLLYTAITRAKQQLLLFADPKAL 539 >UniRef50_C9LC87 Helicase, RecD/TraA family n=6 Tax=Clostridiales RepID=C9LC87_RUMHA Length = 747 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 115/613 (18%), Positives = 210/613 (34%), Gaps = 101/613 (16%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTL---AAALLSHDA-GEGHVCLPLSRLENNEASHP 66 V+ +D A + + + + +L GH+ L L + Sbjct: 197 VKGFGFLTVD-AIARQCCAATNDPMRISGCVSYVLREAMKQNGHLYLEQEILVKDALKVL 255 Query: 67 LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEV 126 + + E + + + R +++ +R+Y+ + E A Sbjct: 256 NKEPDLQPVTETEILK-------VLYRLVMQDSIVVEENRVYITKQHQEEEDTASMIARK 308 Query: 127 NHAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL 184 H ++ + + L++ + QK A + I +I+ G T + Sbjct: 309 LH-EQIPALTIEKELEEAQEDLNITLSEQQKEAVRMVFANPICIIT----GGPGTGKTTV 363 Query: 185 LAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 L ++ + + ++L APTG+AA R+ ES G DA+T+H Sbjct: 364 LKVILYIYQKKCGNEVKLMAPTGRAARRMAESTGNG----------------DATTMHMA 407 Query: 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLAS 303 LG L D + DE SM+D+ + + ARV+ +GD QL S Sbjct: 408 LGLFGDGDYEALTDK--LSADFINADEVSMVDMHLAYEFFYKIKAGARVLLVGDVHQLPS 465 Query: 304 VEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGS 363 V AG V + + +L YR G Sbjct: 466 VGAGDVFRQLILCGKIP-------------------------------VTVLNLVYRQGK 494 Query: 364 DSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ 423 DS I A IN G + DF +E +G +++ Sbjct: 495 DSNIPINAQLINEGKTN---LQWGDDFQMVEC-----------------SGADAAAQIVK 534 Query: 424 ARAEPDLIIQAFNEYQLLCALR-EGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEG 479 ++ + + Q+L + GV LN ++ + ++ + EG Sbjct: 535 NIYLKEIQMYGMEQVQILSPYKVRSAAGVLELNRSLQDEVNPPVSGKRELHLGGEIFREG 594 Query: 480 RPVMIARNDSALGLFNGDIGIALDRGQGT----RVWFAMPDGNIKSVQPSRLPEHETTWA 535 ++ +N NGD+G + + V DG + ++ E A Sbjct: 595 DRILQNKNTEFA--SNGDLGTLVQIAEDEDNNPLVQIVFTDGRRVKYEAEQVEMIEHANA 652 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT- 594 +T+HKSQGSE + P++ R + YT +TRA++R+ + + + + AI T Sbjct: 653 VTIHKSQGSECQVVIIPWLKAFYPMLKRNIFYTGITRAKQRVYIVGEWKAVCQAIHTDDT 712 Query: 595 -ERRSGLAALFSS 606 R++ LA Sbjct: 713 GTRKTMLAVKIQQ 725 >UniRef50_C3CUT3 Helicase, RecD/TraA n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CUT3_BACTU Length = 871 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 126/724 (17%), Positives = 217/724 (29%), Gaps = 186/724 (25%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGD---EHPAVTLAAALLSHDAGEGHVCLPLSRL 58 + L + + D A + D + L EGH L L Sbjct: 211 ENPYLLARKIPGYGFKKCDK-IAKDIHFDMLSDERIQEGIIHGLDEATKEGHCFLHKDDL 269 Query: 59 ENNEASHPL--LATCVSEIGELQNWEECLL-----ASQAVSRGDEPT------------- 98 L + SE + +E + + R + Sbjct: 270 IEKTREILRVTLPSKESERLLKETIDEKISYYFGTIQVMIPRDELNAYYERWKSARYKNE 329 Query: 99 ---------------------------PMILCGDRLYLNRMWCNERTVARFFNEVNHAIE 131 +++ DR+YL + E VA ++ E Sbjct: 330 KEKCLYPLFDIPYELIEEEIENLLTFERIVIEQDRVYLEYIHSAEVRVAEELYRLSDTQE 389 Query: 132 VDEAL-LAQTLDKLFPVS--DEINWQKVAAAVALTRR--ISVISGGPGTGKTTTVAKLLA 186 + + LDK + Q+ A RR V++G G GKT + +L Sbjct: 390 WKNQIDIKAELDKYLSAEGIELEEKQEEAILTFTKRRGGFYVLNGSAGCGKTFVLKIILK 449 Query: 187 ALIQMADGERCR--IRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 + ++L APTGKAA +S E T+HR L Sbjct: 450 IFNIVCKSNGITPYLQLLAPTGKAAKVAKKSTN-----------------EICLTVHRGL 492 Query: 245 GAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASV 304 + G + +A NPL +++V+DE+S +D+ + L+ A+ A VI++GD QL S+ Sbjct: 493 EFR-GGEGFTFNASNPLPGNIIVLDESSFLDVELSKDLLQAIKRGATVIWMGDIKQLPSI 551 Query: 305 EAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSD 364 G+VL DI + L R G Sbjct: 552 GPGSVLKDIIESGVLP-------------------------------VVTLDVVKRQGKQ 580 Query: 365 SGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQA 424 SGI + A I G+ + + ++ + ++ L Sbjct: 581 SGIAKNAKKIIDGEMIETCEDTKDSYAVFRDSPKVILKNILESVKRVLT----------- 629 Query: 425 RAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIH-----------RHPH 473 ++ Q+L + G G +N +++ + Sbjct: 630 -----FPDYTLDDIQVLSPQKTGILGTYMINLLMQEAFNETESTVTSLNKEFTVDNERFS 684 Query: 474 SRWYEGRPVMIARN----------------------------DSALGLFNGDIGIALDR- 504 + EG V+ RN D+ G+ NG+ G+ Sbjct: 685 LYFKEGDKVINMRNNDLKVWYKKSYVSTEDSNVLLTQYTPNKDAKGGIANGETGVIEAIR 744 Query: 505 --------------------GQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGS 544 + R+ DG + + +A ++HKSQGS Sbjct: 745 KIKEPVDNKETIKGAVPAKTKEIIRIIVKYDDG-YIFYDNKEKEDLDHAYAFSIHKSQGS 803 Query: 545 EFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIAT--RTERRSGLAA 602 ++ + + ++ L YT TRA+ + +ER + AI T ER + L Sbjct: 804 QWRACIMPISMLHYRMLDNSLFYTGFTRAQEFNVVIGEERAIKHAIKTYKSRERNTTLKE 863 Query: 603 LFSS 606 S Sbjct: 864 RLES 867 >UniRef50_C7XTE9 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Lactobacillus coleohominis 101-4-CHN RepID=C7XTE9_9LACO Length = 833 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 128/634 (20%), Positives = 219/634 (34%), Gaps = 111/634 (17%) Query: 10 AVEHKQLRPLDVQFALT---VAGDEHPAVTLAAALLSHDA--GEGHVCLPLSRLENNEAS 64 + + +D Q A +A D+ + A + +G + + L Sbjct: 213 FTDGIPFQNVD-QIARRFYSIAPDDSRRLQGAILYSLKELIYRQGGSYVSQADLFAATNR 271 Query: 65 HPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFN 124 ++ Q D+ I +Y + E +A+ Sbjct: 272 CLN-----------YQLDQASFNQQLNELVDQEQIQIEDHQHIYETAFYNAEWKIAQKLV 320 Query: 125 EVNHAIEVDEALLAQTLDKLFPVSDEINW------QKVAAAVALTRRISVISGGPGTGKT 178 E+ + D + Q + + Q A AL + +++GGPGTGKT Sbjct: 321 ELMKFSD-DRPVDHQDFQQAISEIEADKGYQYDQVQTSAIKEALESPVMLLTGGPGTGKT 379 Query: 179 TTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 T V L+ +++ I L APTG+AA ++ G +A Sbjct: 380 TIVNGLVETYLKLHPKLSEEDIMLVAPTGRAAKQINSVTGI-----------------EA 422 Query: 238 STLHRLLGAQPG--SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFL 295 ST+HRLLG +L +PL +L+VDE SM L + + LI A+ ++ + Sbjct: 423 STIHRLLGLTADINDDQLMQMDFDPLDAKLLIVDEMSMTSLALFTALISAVNQGTHLVLV 482 Query: 296 GDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLL 355 GD DQL SV G V D+ A L Sbjct: 483 GDCDQLPSVGPGQVFYDLLAAEGIPQR-------------------------------RL 511 Query: 356 QKSYRFGSDSGIGQLAAAINRGDKT-AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAG 414 + YR S S I LA IN G T + + + + S + ++ +A+ Sbjct: 512 KHIYRQSSHSSIIPLAHRINEGTVTQELFAPESANQYAHRQFICASLNNIPQLITQAVKL 571 Query: 415 YGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRH 471 Y D+ + Q+L ++ G G +N ++ + + + Sbjct: 572 YHEKHDV------------PIMDIQILASIHGGVAGTVNINRVLQATLNPDKPTKPAIQL 619 Query: 472 PHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV-----------WFAMPDGNIK 520 G VM ND +FNGD+GI + DG Sbjct: 620 GSRILRVGDKVMQTVNDPDKNVFNGDLGIIKTIEGQNVIHGAPKAVAKQKVVVDFDGAEV 679 Query: 521 SVQP-SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP-------VVTRELVYTAVTR 572 + + + + MT+HK+QGS+ +I+ P ++ R L+YTAVTR Sbjct: 680 EYLRLNEINALQLAYCMTIHKAQGSQAPVVIIIMTDDYFPRRPGIPTIMHRNLLYTAVTR 739 Query: 573 ARRRLSLYADERILSAAIATRTE-RRSGLAALFS 605 + + L + + + T+ R++ L + Sbjct: 740 SSQALLMVGSPQAFVNCAQSPTKYRQTTLTKRIT 773 >UniRef50_Q6ANK0 Related to exodeoxyribonuclease V, alpha chain n=1 Tax=Desulfotalea psychrophila RepID=Q6ANK0_DESPS Length = 527 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 189/550 (34%), Positives = 275/550 (50%), Gaps = 71/550 (12%) Query: 26 TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECL 85 +AG+E + + L G C+ L E + +T +++ + Sbjct: 19 GLAGEEALRFSGIISGLMQHLAGGSSCV---ELAKGELALLGKSTLSTQVAGI------- 68 Query: 86 LASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA---IEVDEALLAQTLD 142 TP++L G RLYL R + E +AR + + +D LLA T Sbjct: 69 -------DETPLTPLVLYGRRLYLQRYFVYEARLARQLLDYASGQSVLRIDPDLLAATFP 121 Query: 143 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 + +E + QK A AL V+SGGPGTGKTTTV ++LA L A G + + LA Sbjct: 122 EELDEGEENHQQKAA-EKALQTPFLVVSGGPGTGKTTTVVRILALLHH-AIGHKLDVALA 179 Query: 203 APTGKAAARLTESLGKALRQLP--LTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 APTGKAA RL ES+ +LP L + + +PE A TLHRLLG Q S R RH+ NP Sbjct: 180 APTGKAAQRLYESILGGADRLPEQLRRDVGEWLPEKAVTLHRLLGTQLNSTRFRHNRENP 239 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320 L D++++DEASMIDL MMS+L+DAL R+I LGD+DQLASVE+G VL + + Sbjct: 240 LGWDLVLLDEASMIDLAMMSKLVDALKPGGRLILLGDKDQLASVESGTVLATVIS----- 294 Query: 321 FTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKT 380 L L K+YRF + I +A A N G+ Sbjct: 295 --------------------------GLARCSAQLIKTYRFNDE--IKAIAIATNAGNGH 326 Query: 381 AVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 + ++ ++ ED+ A +E Y + +L + + + + ++ + Sbjct: 327 RAWQLLEK----------RAVEDWQAYIEGNYRKYISSVQML-SGSGAEDAFASLKKFMV 375 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 LC R G V G+N+ +E+ + ++ R +S WY GRP++I++ND LGL+NGDIGI Sbjct: 376 LCGTRRGRRAVEGINQMVEEDLLRQGL--RGSNSSWYIGRPILISQNDYNLGLYNGDIGI 433 Query: 501 ALDRGQG-TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTP 559 L G +VWF G P L +++T +AMTVHKSQGSEF ++LP + P Sbjct: 434 CLPDEDGMLKVWFETGSGTFIRFLPVALSDYDTVFAMTVHKSQGSEFTEVMMVLPIEDNP 493 Query: 560 VVTRELVYTA 569 V+ REL+YT Sbjct: 494 VLCRELIYTG 503 >UniRef50_A8S078 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S078_9CLOT Length = 655 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 119/621 (19%), Positives = 209/621 (33%), Gaps = 114/621 (18%) Query: 11 VEHKQLRPLDVQFALTVAGDEHPAVTL---AAALLSHDAGEGHVCLPLSRLENNEASHPL 67 + +D A + + + + EGH+ +L E + Sbjct: 98 ISGFGFLTVDE-IARKTGCSPKDPMRIEGCIEYCMEQENQEGHLF--QEKLLFQEKVYEK 154 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 L + + L +Q+V + E + LY + + E A+ + Sbjct: 155 LNYGYEKGTVTE-----LEIAQSVYKMVEAGKLHFESGVLYAEKYYRYEHEAAKALAALL 209 Query: 128 HAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTT----- 180 E + L + L K QK A A + ++I+ Sbjct: 210 MQKEKEPEQLEEFLSKAQEELGICLAAKQKEAVKNAFSFLFTIIT---------GGPGTG 260 Query: 181 ---VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 V K++ + + + L APTG+A+ R+ E G DA Sbjct: 261 KTTVEKVILYIHEKLR--GGSVLLMAPTGRASRRMAECTG----------------CTDA 302 Query: 238 STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 ST+H LG + L D+++VDE SM+D+ + + RV+ +GD Sbjct: 303 STMHSALGLVSEEMESESC--DFLEADLILVDEMSMVDMRLAYEFFTRIKRGTRVVLIGD 360 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 +QL+SV G V ++ + +L + Sbjct: 361 VNQLSSVGPGNVFRELIQCGAVP-------------------------------VTVLDQ 389 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 +R G S I A + L+ GED++ + + Sbjct: 390 IFRQGKGSLIAANAYKMLN-----------------NSAALEYGEDFVFLPADNAECAAE 432 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALRE-GPFGVAGLNERIEQFMQQK---RKIHRHPH 473 ++ R +L I ++ Q+L R+ G V LNER+ + K + + Sbjct: 433 IVEREYRRMTAELGI---DQVQVLTPYRKSGAVSVNALNERLWNLVNPKMPGKAEMKVRG 489 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIAL----DRGQGTRVWFAMPDGNIKSVQPSRLPE 529 + E V+ +N + NGD G D PD + Sbjct: 490 RIFREKDKVIHNKN--KNEISNGDTGFITGIYLDEDNLEVSRIEFPDNRCVEYSSEDMEM 547 Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAA 589 E +A TVHKSQGSE+ L ++ R ++YTA+TRA+ +L L ++ + A Sbjct: 548 IEHAYATTVHKSQGSEYSVVILPWMPMFYKMLRRNILYTAITRAKVKLILVGSKQAVYRA 607 Query: 590 IAT--RTERRSGLAAL-FSSR 607 + +R + L + R Sbjct: 608 VHNTESDKRNTRLGEMILKER 628 >UniRef50_C8NA26 Probable exonuclease V, alpha subunit n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA26_9GAMM Length = 606 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 177/626 (28%), Positives = 267/626 (42%), Gaps = 90/626 (14%) Query: 38 AAALLSHDAG---EGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRG 94 A L+ +G G + L L + +H T + + + L A+ ++ Sbjct: 4 LAHYLARQSGCPEHGSILADL--LTALQNAHDNGDTLIQLNDAQRAAADTLAATPLLADD 61 Query: 95 DEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQ 154 D P+ GDRL+++R + E +A E HA + + P Q Sbjct: 62 DRAAPLTRRGDRLWISRNYQQEARLAAMLRERLHAADTPAEPI--------PADGLRAEQ 113 Query: 155 KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTE 214 + A +A +RR+++I+GGPGTGKT T+A+L+ A + + RI LAAPTGKAA R+ E Sbjct: 114 QNAIRLARSRRLALINGGPGTGKTYTIARLIHA--EQQADPKIRIALAAPTGKAAKRMEE 171 Query: 215 SLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMI 274 SL A Q A TLHRLLG Q R+H L D++++DEASM+ Sbjct: 172 SLAAAGVQ-----------DLPAQTLHRLLGIGTDGQ-ARYHMSRHLPHDLIIIDEASML 219 Query: 275 DLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAV----------------LGDICAYAN 318 L + LI A R+I LGD DQLA+VE GA+ L + + Sbjct: 220 SLELAHALIAATATDTRLILLGDADQLAAVEPGAILHDLSHHPALQNHRITLRESQRFRA 279 Query: 319 AGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK-----------------SYRF 361 + A L+ G H A ++ L L + S+ F Sbjct: 280 DSGIGQLAAILNGDDGQHGERLLEALAPYKKEQLPLFCRESDGLRLQTAGAKTSADSHPF 339 Query: 362 GSDSGIGQ-------------LAAAINRGDKTAVKTVFQQ--------DFTDIEKRLLQS 400 +G G+ A + + G D I Sbjct: 340 PCVAGEGRGGGVKTSRSDNTVTATSFDAGQPPVTDKNAGHKNLRSQNSDEKTIHWYPTPD 399 Query: 401 GEDYIAMLEEALAGYGRYLDLLQ-ARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIE 459 Y A++ A Y YL+ LQ A A P ++ +++Y++LCA G G +N + Sbjct: 400 ANLYRALI----APYQPYLEKLQDAAANPQELLNTYDQYRILCAGHHGALGTRRINAALR 455 Query: 460 QFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNI 519 Q Q+ + P +Y G P+MI ND L+NGD GI + G ++ +P Sbjct: 456 QLHQRAQGAD--PSLAYYHGLPLMILENDHRQQLYNGDTGICFEDDNGLQLH--LPGHEP 511 Query: 520 KSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL 579 + +A+++HKSQGSE+ H AL L +++REL+YT +TR++ RL + Sbjct: 512 VPLARLNPATLTDAYALSIHKSQGSEYPHVALALDEHAERLLSRELLYTGITRSKGRLDI 571 Query: 580 YADERILSAAIATRTERRSGLAALFS 605 YA L A AT T R +GLA Sbjct: 572 YASADALKNAAATPTRRHTGLAWHLD 597 >UniRef50_Q46K41 DNA helicase/exodeoxyribonuclease V, alpha subunit n=2 Tax=Prochlorococcus marinus RepID=Q46K41_PROMT Length = 573 Score = 323 bits (829), Expect = 9e-87, Method: Composition-based stats. Identities = 125/582 (21%), Positives = 239/582 (41%), Gaps = 65/582 (11%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN-EASHPLLATCVSEIGELQNWEECLLA 87 + + A+ +L G V + + ++ N E + + + W + Sbjct: 28 IESNEALIDIVNVLMDGLSRGDVYIDMKKIPENLELKYKDWPSYHMKALLESGWTK---- 83 Query: 88 SQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPV 147 + +P++L GD + R + N I L ++ + Sbjct: 84 -------GDNSPIVLNGDLISWRRTHNEIVETIQKILLRNQPINHLSKELPVRIEAK-NL 135 Query: 148 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGK 207 Q A + + +I ++SGGPGTGKT+T+ ++L L + I +AAPTGK Sbjct: 136 EHLNIQQIDAVNLVKSEQIILLSGGPGTGKTSTILQML--LEALTRNPTLSIAMAAPTGK 193 Query: 208 AAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLV 267 AA +L +++ + + K + TLH+ L A P R ++ L LD++V Sbjct: 194 AAKKLKDTIQAGIEDFD-DPIKDKLSNIPSKTLHKWLEAGPNG--FRRNSQRLLKLDLIV 250 Query: 268 VDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERAR 327 +DE SM+DL ++ L+DAL ++I +GD DQL + +G + + + Sbjct: 251 IDEMSMVDLSTINGLLDALTKSCQIILVGDPDQLLPIGSGGIWQILQEKETKTNFQSNSV 310 Query: 328 QLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQ 387 +L++ + + LL+ D G+ +++ + + + Sbjct: 311 KLTKSYRN-------------KGDIALLRNIL---KDKGVDAFWQLLSKKEDSTNTLHYL 354 Query: 388 QDFTDIEKRLLQSGEDYIAMLEEAL---------AGYGRYLDLLQARAEPDLIIQAFNEY 438 I ++++ Y L+E + + + E + + + Sbjct: 355 SSIKSIPDPVVRTLVSYRKKLKELTENCINYIPDEAWQSSMIEVDQSVEIQKLFKFIDNL 414 Query: 439 QLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDI 498 +LC R GP+GV ++E + K +W E P+M N +GL NGD+ Sbjct: 415 LILCPQRYGPWGVKKIHEFL------LGKRFEKEVHKWGEATPIMAKSNQPEIGLANGDV 468 Query: 499 GIALDRGQGTRVWFAMPDGN----IKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 G+ + G+ R F + + + PSRL ++ +AMT+HK+QGSE D L+ P Sbjct: 469 GVIIGNGEKRRFLFNVFSEEQRLVTRLINPSRLNRYDAAYAMTIHKAQGSEADQVLLLWP 528 Query: 555 SQ------------RTPVVTRELVYTAVTRARRRLSLYADER 584 + + + ++YTA+TRA+++L + ++ Sbjct: 529 TTSKVSEEKTSNKFYSDDYEKRMLYTAITRAKKQLMVITNKE 570 >UniRef50_Q04YR4 Exodeoxyribonuclease V, alpha subunit n=4 Tax=Leptospira RepID=Q04YR4_LEPBL Length = 616 Score = 323 bits (829), Expect = 1e-86, Method: Composition-based stats. Identities = 152/647 (23%), Positives = 249/647 (38%), Gaps = 90/647 (13%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61 KL+ +L+ E L+ + F+ + L + S EG +C+P+ + + Sbjct: 12 KLKADILDLYESGALKKIPENFSDYL------LEILNSIWSS--MEEGSLCVPVKKEWRD 63 Query: 62 EASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVAR 121 V + E Q W +Y + ++ + Sbjct: 64 VLK-LKPPGLVVDKFENQEW-------------------------VYFEKTHRSKTDLES 97 Query: 122 FFNEVNH---AIEVDEALLAQTLDKLFPVS-DEINWQKVAAAVALTRRISVISGGPGTGK 177 E +VD + L L S Q L ++SGGPGTGK Sbjct: 98 LLKERIQNDVPPKVDRHRAEKILKNLESKSFPLKEAQVKTILSCLNSSFHIVSGGPGTGK 157 Query: 178 TTTVAKLLAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 TT VA LL L Q+ I L APTG+AA RLTES+ L E K Sbjct: 158 TTVVAFLLEILNQLGQLPSPEEIALVAPTGRAAQRLTESIQ---ENLKKISEMKGSDFLR 214 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHA------ 290 T+H LL + ++ L +++VDE SM+DL +M L +A+P Sbjct: 215 GQTVHGLLSYKSSLGGFYYNRERYLPHRLIIVDEVSMVDLNLMLSLWNAIPRDTKKDDRK 274 Query: 291 ---RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAAS 347 R I +GD QL SVE GAVL D + + ++A SRL G++ G + Sbjct: 275 IPLRFILIGDPHQLPSVEKGAVLSDFLSVLES----KKANFASRLEGSNRQKSKGNVSKI 330 Query: 348 LRDSLCLLQKSYR-----------FGSDSGIGQLAA---AINRGDKTAVKTVFQQDFTDI 393 + + +L S F + IG+ + + A KT ++ Sbjct: 331 VVLAEEILGYSPENLNLGTKIDDSFPKTTTIGENSKYESEVVWLQNPANKTSDHLSRDEV 390 Query: 394 EKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 ++L E + + + + L + +++ L R G +GV Sbjct: 391 VEKLWT--EIFHPGISKIGTWKVKDSFDLNEAGFILKFQEELKKFRCLTVFRNGYWGVEA 448 Query: 454 L-----NERIEQFMQQKRKIHRHP-----HSRWYEGRPVMIARNDSALGLFNGDIGIALD 503 + N + +K + ++ G P++I +ND LFNGDIGI L Sbjct: 449 IQTKIMNLAAQDLFHRKDQKPDFFAKRLSKRLYFIGLPILITQNDKNRKLFNGDIGIVLR 508 Query: 504 RGQGTRVWFAMP-DGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQR----- 557 + P +G + LP+HE + M++HKSQGSE+D + +P Sbjct: 509 MESTGELRAVFPIEGKLLPFALDTLPKHEPAFVMSIHKSQGSEYDTILIYIPDHPESQEK 568 Query: 558 ---TPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601 ++ R+++YT +TRA+ ++ L + + IA +R +G Sbjct: 569 ERSHRLLNRQILYTGITRAKNQVILAGNPKTWEIGIANSQKRNTGFK 615 >UniRef50_C0DUX7 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DUX7_EIKCO Length = 588 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 192/596 (32%), Positives = 278/596 (46%), Gaps = 44/596 (7%) Query: 18 PLDVQFA---LTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSE 74 P A +A V L GH + L+ Sbjct: 28 PAAQAAAEVLQRLAPQTAEPVLPLLDELFAAQEGGHSYITLA------------------ 69 Query: 75 IGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIE--V 132 Q E A+ V G TP++L G RL+ R++ ER+VA + H Sbjct: 70 ---PQEAEALRQAAPVVGDGGAFTPLVLRGRRLFSGRLFALERSVAAELQRIAHNRVRLP 126 Query: 133 DEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMA 192 + A L Q L FP + N Q++AAA+A+ + + +++GGPGTGKTTTVAKLLA L A Sbjct: 127 ENAGLRQRLRDWFPDAG-HNGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALLCADA 185 Query: 193 DGERCRIRLAAPTGKAAARLTESLGK--ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGS 250 RI L APTGKAAA +T SL + + ++ + + T+HRLL P Sbjct: 186 VEMP-RIALTAPTGKAAAHMTRSLHRALSSFKVGSEQVLQHLTVLEGQTVHRLLKLNPVV 244 Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310 + + PL D++V DEASM+DLP++ +L+ A+P+H R+I LGD +QL V GAVL Sbjct: 245 GYSKFNREQPLPFDIVVADEASMLDLPLLHQLLCAIPEHGRLILLGDENQLPPVGIGAVL 304 Query: 311 GDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQL 370 + TA+ A QL+ VP L ++ L+ S+RF G+G L Sbjct: 305 PVLAQ--PTVLTAKEAAQLAEWLPEGVPFEVRDNPPPLAGNVARLEYSHRFDPQRGVGAL 362 Query: 371 AAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDL 430 A A+ G+ A + F + D+ + E A+ Y Y + + +P Sbjct: 363 AQAVVNGEAAAAEAAFARFTDDLFRLP----ETPAALARHFTKQYEAYWQAVNS-GDPAA 417 Query: 431 IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSA 490 A + +L A R N + + + R W+ G+ +M+A ND A Sbjct: 418 CFSAQQQLVVLAARRSQAA---EFNREYRKLLAAQG---RAAEQGWFAGQVLMVAENDYA 471 Query: 491 LGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 + +FNGDIGI L G G +F G ++V SRLP H+T +AMTVHKSQGSE+ Sbjct: 472 VNVFNGDIGIVLPHGDGLAAFFPDAGG-FRAVSLSRLPAHDTAFAMTVHKSQGSEYQEVW 530 Query: 551 LILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 L+ + + R L+YTA+TRARRR L AA+ + RR+GL S Sbjct: 531 LLGDEADSALFDRTLLYTAITRARRRFGYAGQMSALIAAVQRKNHRRTGLGEALQS 586 >UniRef50_A8EUL3 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUL3_ARCB4 Length = 775 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 120/658 (18%), Positives = 237/658 (36%), Gaps = 127/658 (19%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGE-----GHVCLPLS 56 + L+ ++ + D A ++ D + A L++ E G+ + Sbjct: 181 QNPYILIN-IKGIGFKRADE-IAKSLGIDPKSEFRIM-ACLNYTLREFCDNNGNSSIDKF 237 Query: 57 RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 L + +E L S + + +R+ L+ ++ E Sbjct: 238 HLYKLLDESLRFSN-----------QELLYESAISKMLVDEELFVTSENRVALSMLYYAE 286 Query: 117 RTVARFFNEVNHAIE------VDEALLAQTLDKLFPVSDEINWQKVAAAVALTR-RISVI 169 + + FF+ DE L+ + F + QK A + + + + Sbjct: 287 KRILEFFSRRKDEKNKKIIASFDEYLVKKQETLGF---ELSVEQKKAVELINSGEKTLFL 343 Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 G GTGK+T+ +L L ++ + I A +G A+ R++++ G Sbjct: 344 IGYAGTGKSTSSRAILELLEEIMSYDD--IMTIALSGIASQRISDTTG------------ 389 Query: 230 KKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 ++ST+ LL ++H + +++DEASM++ ++I + D Sbjct: 390 -----YNSSTIQSLL--------VKHKEKDFFPYKAILLDEASMVNSVTFYQIISKIDDD 436 Query: 290 ARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLR 349 I +GD QL ++ AG +L D Y A Sbjct: 437 TIFIIVGDDGQLPAIGAGNILADAIKYELAP----------------------------- 467 Query: 350 DSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQ---------- 399 +C L K YR + I +A I RG+ + K + +DF I+ + Sbjct: 468 --ICKLTKIYRQNENQAIAVIANDIRRGEIPSYKEDY-EDFRFIDVSIANYYAMKNSVSS 524 Query: 400 ------SGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAG 453 GE+ +L L Y+ + I +A +Q++ ++ G GV Sbjct: 525 NDFADLRGENSEYILNNILNISSTYIQDYYDFIKKKKISKALTLFQVITPMKGGVLGVDN 584 Query: 454 LNERIEQFMQ-QKRKIHRHPHSRWYEGRPVMIARNDS-----------------ALGLFN 495 LN ++++ K K + V+ +N++ ++N Sbjct: 585 LNIQLQKLFNHTKGKAFASKIYEYKLTDKVIHIKNENMKAQTMSMYKSGSTDFLERRVYN 644 Query: 496 GDIGIALDRG-QGTRVWFAMP-DGNIKSVQPSRLPE-HETTWAMTVHKSQGSEFDHAALI 552 G +G+ + + + P D + + + +T+HK+QG E+D+A + Sbjct: 645 GQLGLIIKLDFEEEKCIVLYPNDDMVVFYDFENVHHLLSLAYCLTIHKTQGMEYDNALIP 704 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALFSSRE 608 + + +L+YTA+TRA++ + +E +A T R S + L S +E Sbjct: 705 MSFSHYIMHNTKLLYTAITRAKKMCFIVGEEEAFKSACKKLEITIRESVINDLLSKKE 762 >UniRef50_Q6F1E4 Exodeoxyribonuclease V n=1 Tax=Mesoplasma florum RepID=Q6F1E4_MESFL Length = 743 Score = 320 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 130/623 (20%), Positives = 239/623 (38%), Gaps = 100/623 (16%) Query: 8 LEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPL 67 E ++L + V F L + E A G L + Sbjct: 196 KEIASFEELDKVAVHFGLELHSPERIAYWAWKLADDFLFASGDTYTNKDYLSRSLMRKLK 255 Query: 68 LATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVN 127 ++ L + + E + L +R+Y W E+ +A ++N Sbjct: 256 -------------IQDTELLFEGILYAKEKGILKLTKNRIYTEESWREEQIIADNIIKLN 302 Query: 128 HAI----------EVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGK 177 E+++ + Q+ A + ++S+I+GGPGTGK Sbjct: 303 IPTKNANKEGISWEINQIEEEIAYENKIKDFKFDEKQREALELFANNKLSIITGGPGTGK 362 Query: 178 TTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDA 237 TT + ++ +M+ E I A PTG+AAAR+ E+ K+ A Sbjct: 363 TTLIKGIVKLFNRMSGTEDYAI--ATPTGRAAARIRETYKKSY----------------A 404 Query: 238 STLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGD 297 +T+H+LL A+ + + NPL+ ++++DE SMID + + I + +V+ +GD Sbjct: 405 TTIHKLLEAK-ELNKFQITQNNPLNQKLVILDECSMIDNKLFASFIQSCDRVRKVVLVGD 463 Query: 298 RDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 +QL SV G D+ L Sbjct: 464 ANQLPSVGYGNTFADLLELDFL-------------------------------KTIKLDT 492 Query: 358 SYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 +R + +GI LA + +T+ D + + + + + G+ Sbjct: 493 VHRQKNGNGIVDLAYKVLN------ETLEISDLESMSNVEINFDYNNQNTMNKVTEIVGQ 546 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQ----QKRKIHRHPH 473 + D L+ RA N Q++C + G G+ +N +I+ K+K++ Sbjct: 547 HWDDLEKRA---------NHLQVICPMYGGELGIDEINAQIQNEFNENVKDKKKVYDRGD 597 Query: 474 SRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG----TRVWFAMPDGNIKSVQPSRLPE 529 R+ +M +ND+ L L NGD+G + + + +QP + Sbjct: 598 YRFVVEDKIMFLKNDTDLDLANGDVGKIIKINYDAIGRLKDVLTEFNDKEILLQPKNFSD 657 Query: 530 HETTWAMTVHKSQGSEFDHAALIL--PSQRTPVVTRELVYTAVTRARRRLSLYADERILS 587 + ++A +VHK+QGSE+++ L++ P + + + L+YTAVTRA+ ++ + D + Sbjct: 658 VKLSYATSVHKTQGSEYNNVLLVIDSPKFNSGFINKTLIYTAVTRAKDKIVILGDSDLFF 717 Query: 588 AAIA-TRTERRSGLAA-LFSSRE 608 AI T R + L + RE Sbjct: 718 NAIKITPPRRNTTLIETMLEKRE 740 >UniRef50_UPI0001C31D3E helicase, RecD/TraA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D3E Length = 741 Score = 319 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 127/621 (20%), Positives = 209/621 (33%), Gaps = 106/621 (17%) Query: 13 HKQLRPLDVQFALTVAGD---EHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLA 69 D A + L +G C P + L Sbjct: 197 GVGFVTAD-AIAHGLGAPLESPARTRAAILHALGEGERDGSTCQPAAALLLRTRELLS-- 253 Query: 70 TCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA 129 ++ + L V + + +Y ER +A + Sbjct: 254 ---AQAPPPAAFLAELEEGGDVETEQDDEAVW-----VYRAETARLERELAERVTALLDG 305 Query: 130 IEVDE-ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL 188 D+ + + D + Q A R+SV++GGPGTGKT + + Sbjct: 306 DGSDKLSDPVEPPDAGADGVELTAEQWAGVRGAFVHRLSVVTGGPGTGKT----ASIRMI 361 Query: 189 IQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP 248 Q+A +R R L APTG+AA R+TE+ G DAST+H LG P Sbjct: 362 GQIARDQRARTMLVAPTGRAALRMTEATG-----------------LDASTVHSALGWIP 404 Query: 249 GSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGA 308 G + H PL D+++VDE SM +L ++ L+ A+ V+ +GD DQLA V AG Sbjct: 405 G-EGPVHDEDTPLRCDLVIVDETSMANLELLVTLLRAIGPGTHVVLVGDADQLAPVGAGK 463 Query: 309 VLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIG 368 ++ A LQ +R + S I Sbjct: 464 PFAELVASGRVP-------------------------------TARLQHIFRQAAGSMIV 492 Query: 369 QLAAAINRGDKTAVKTV--FQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARA 426 Q A AI G+ + + D I + +A + L+ R Sbjct: 493 QGAHAIRVGNPPSFVRAEEMRHDLFFIARPDP-------------VAAREEIVSLVSERL 539 Query: 427 EPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIA- 485 + + Q+ + G G+ LN + + + + R G +M+ Sbjct: 540 PQHYGVDPNADIQVFAPIYRGELGIDALNRSLRAALNPAGREI--GNGRLRVGDKLMLVG 597 Query: 486 RNDSALGLFNGDIGIALDRGQGTRVWFAMPDG-----------------NIKSVQPSRLP 528 RN LG+ NG + LD G + + + + Sbjct: 598 RNLHELGVMNGTLLRLLDEVGGGSSEDEDARDARGAREAGGVLVGVDGGAVVQIPATEVG 657 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQR-TPVVTRELVYTAVTRARRRLSLYADERILS 587 + + +A +VH+ QG E A ++ + RE++YTA+TR+ + +++ Sbjct: 658 QLQLAYACSVHRGQGIELPIAIVVAHPAAGGRFLRREMLYTAITRSTVATVIVGTPDMVA 717 Query: 588 AAIAT--RTERRSGLAALFSS 606 A T R S LA + Sbjct: 718 RAARTTDAGRRHSRLAQRLDA 738 >UniRef50_A4AB31 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4AB31_9GAMM Length = 1227 Score = 317 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 136/640 (21%), Positives = 230/640 (35%), Gaps = 79/640 (12%) Query: 30 DEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQ 89 D L LS EGH LP+ + S PL C + L E Sbjct: 460 DPRRVRPLCILTLSEAIEEGHTLLPVDWVIQRIRSRPLKPECKIDHDLLAVVIESFTGFI 519 Query: 90 AVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL-------D 142 + P + + ++ RTV + A + D L D Sbjct: 520 DAVQLKNGAPALQLAEYASTKQLIA--RTVEKRLKRKRTAGDFDWDSLVADAIGEGVPSD 577 Query: 143 KLFPVSDEINWQ--KVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR 200 + S+ Q A ISV++G GTGK+T LL AL ++ E + Sbjct: 578 PVLAASENKARQEKAAALEEIYQSGISVLTGSAGTGKST----LLKALCRIPGVEESGLL 633 Query: 201 LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260 L APTGKA RL ++ G + + K D T L + R R Sbjct: 634 LLAPTGKARVRLEQATGMFKQGQTIAQFLLKYGRYDGETGRYLWVSAADPCRDRK----- 688 Query: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA- 319 ++VDE SM+ ++ L+ + + R+I +GD QL + AG DI Sbjct: 689 ----TVIVDECSMLTEDQLAALLSGIKNVERLILVGDPQQLPPIGAGRPFVDIVERLRPD 744 Query: 320 GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK 379 G + R + +P ++ R+ L D ++ I+ G Sbjct: 745 GESNYFPRVDAGYASLSIPRRQLSDGDKPREDLLFADYFSGGPLDPAADEVWTRISSGSI 804 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAM-LEEALAGYGRYLDLLQARAEPDLII------ 432 +K V D++ +L+ D + + EE AG+ + ++ +PD + Sbjct: 805 DGLKVVSWSTPDDLQAKLVGQLVDELGLDSEEDEAGFEVSIGGVRWDKDPDRVFFNNRWK 864 Query: 433 ------QAFNEYQLLCALREGPFGVAGLNERIEQFMQQ----------KRKIHRHPHSRW 476 ++ ++Q+L LR GV +N ++ ++ + R Sbjct: 865 DRRGAAESAEDWQILSPLRASEVGVEAINRLLQSRFRERAQHMAAQRWPKIPKPMGPQRI 924 Query: 477 YEGRPVMIARNDSALG---------LFNGDIGIALDRGQGTR-----VWFAMPDGNIKSV 522 G V+ RN S + NGDIG+ + + Q + + + Sbjct: 925 LWGDKVINVRNSSKRKVWPDIDSPYVANGDIGVVVGKYQKGKGVPKHLEVELTAQTGPQY 984 Query: 523 QP---------------SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVY 567 P E +A+TVHK+QGSEF LI+P+ +++RE++Y Sbjct: 985 SAGSPQYKYFASEFSGEDANPPLELAYALTVHKTQGSEFGTTFLIIPN-PCRLLSREMLY 1043 Query: 568 TAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSR 607 TA+TR + R+ ++ L + S +A ++ Sbjct: 1044 TALTRHKDRVVVFHQGD-LRDIARFSSPDYSEIARRLTNI 1082 >UniRef50_D2U880 Probable exodeoxyribonuclease v, alpha subunit protein n=1 Tax=Xanthomonas albilineans RepID=D2U880_XANAL Length = 647 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 229/630 (36%), Positives = 307/630 (48%), Gaps = 37/630 (5%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVAGDEH---PAVTLAAALLSHDAGEGHVCLPLSRLEN 60 LR LD+ FA ++ + PAV AAAL S GH L + Sbjct: 1 MNLFDALQRAGTLRTLDLAFAQSLQRLDPTTAPAVLAAAALASLAVASGHAGLDPA---R 57 Query: 61 NEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPT------PMILCGDRLYLNRMWC 114 A + + +W L AS+ V++ P++L LYL R Sbjct: 58 ANALLDSRDSTAPPLPTTDDWMRALAASRWVAQPVAEDAASADCPLVLERGLLYLRRYRE 117 Query: 115 NERTVARFFNEVNHAIEV--DEALLAQTLDKLFPVSDE--------INWQKVAAAVALTR 164 ER +A + D A LA +LFP + + Q AAA+AL R Sbjct: 118 YERRLALGLRRLAAPSPPQGDLAALAPLFAQLFPRAGRQATLDDSFPDRQARAAALALRR 177 Query: 165 RISVISGGPGTGKTTTVAKLLAALIQMADG---ERCRIRLAAPTGKAAARLTESLGKALR 221 + +++GGPGTGKTTT+A+LL I + RI LAAPTG+AA R+ ESL A+ Sbjct: 178 ALLLVTGGPGTGKTTTIARLLLLRIAQSHTLSMPAPRIALAAPTGRAAERMAESLRAAVA 237 Query: 222 ---QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278 + + +P ASTLHRLLG S R RH NPL +V+VVDEASM+DLP+ Sbjct: 238 HACADGVDPALAEALPASASTLHRLLGVIRESPRFRHDPDNPLPFEVIVVDEASMVDLPL 297 Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVP 338 M +L++A+ D A++I LGD DQL SVEAG VL I A G + A L Sbjct: 298 MCKLVEAVADGAQLILLGDADQLPSVEAGDVLAAILQAAGPGDALQPADA-HALRPLLGH 356 Query: 339 AGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLL 398 + T++ L L +SYR D + LA A+ G+ + ++ E + Sbjct: 357 SAVATQSGGLIGHRVQLLRSYRQAQDFTLAPLAEAVRTGEADTTMQLLRKG----ELAGV 412 Query: 399 QSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI 458 + L + L A P + A +LL A+R GP G LN RI Sbjct: 413 HFHDGVDDPLVAGGDALFAHWRALGEAANPSEALHAAARLRLLTAVRAGPQGAHTLNARI 472 Query: 459 EQFMQQKRKIHRHPHS--RWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRV-WFAM- 514 EQ + HR S W+ GR ++I N GLFNGD+GI L QGT V WF+ Sbjct: 473 EQRLAGPTSGHRRLGSATPWFHGRLLLIVENSYRHGLFNGDVGICLRDAQGTLVAWFSGA 532 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 DG+++ P+ LP HE+ +AMTVHK+QGSEFD L LPS+ V++RELVYT +TRAR Sbjct: 533 GDGHVRGFHPAALPAHESAFAMTVHKAQGSEFDTVWLQLPSRDARVISRELVYTGLTRAR 592 Query: 575 RRLSLYADERILSAAIATRTERRSGLAALF 604 R L L A E +L AA+A R R SGLA Sbjct: 593 RALHLAASEPLLRAALARRAARISGLAWRL 622 >UniRef50_C8X8R3 Exodeoxyribonuclease V n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8R3_NAKMY Length = 653 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 136/573 (23%), Positives = 218/573 (38%), Gaps = 96/573 (16%) Query: 29 GDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLAS 88 D L L+ A +GH P + + + LL Sbjct: 130 DDPRRGRALVQWTLARHARDGHTISPAGLVADGIRPFGIDPEPAIG--------AALLTD 181 Query: 89 QAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVS 148 VS L + E T+A + LA V+ Sbjct: 182 DVVSVPAPDG--RGDERWLARAPLAGAEATIAEGLARLTRT----ARTLAGERAVKRAVT 235 Query: 149 DEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKA 208 D + Q A A+A +S+++GGPGTGK+ TV ++ ++ I LAAPTG+A Sbjct: 236 DLDDVQAGAVALAAKHGVSLLTGGPGTGKSRTVEAIVKLCTEVEAS----IALAAPTGRA 291 Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR-----LRHHAGNPLHL 263 A RL E G A A+T+HRLL A+P + AGNP+ Sbjct: 292 AKRLEELAGSA-----------------ATTVHRLLDARPPDKGSTSYVFDRDAGNPIEA 334 Query: 264 DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTA 323 ++VVDE SM+D+ + + LI A+ D A ++ +GD QL S+ G VLGD+ Sbjct: 335 KMIVVDETSMLDVELGAALISAIADGAHLVIVGDPAQLPSIGPGRVLGDLIDSGALP--- 391 Query: 324 ERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVK 383 + L K YR I +LA A+ G+ AV Sbjct: 392 ----------------------------VTELTKLYRQDEGGTIARLAIAVRAGELPAVA 423 Query: 384 TVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCA 443 + + ++ + ++ +++ P + ++ Q++ Sbjct: 424 DPTHEVVIVPARGSEEAAHRVVQVVTDSI---------------PRVFDCERDQIQVVTP 468 Query: 444 LREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSAL---GLFNGDIGI 500 + GP G LN ++ + R + G V+ N G NG++G Sbjct: 469 VHRGPAGTQALNRALKAALNPGTGTVRG----FDPGDRVVATANHLDAEPTGYANGEVGT 524 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 L G T G + L + WA+TVH++QGSE++ +LP + + Sbjct: 525 VLTCGDNT--IRVSFTGGEAEISGKALGDLLHGWAITVHRAQGSEWEAVVAVLPPEAGNM 582 Query: 561 VTRELVYTAVTRARRRLSLYADE-RILSAAIAT 592 ++R LVYTA+TRARR LS+ ++ + Sbjct: 583 LSRPLVYTALTRARRHLSVVHAAGPAVARGVRE 615 >UniRef50_Q6A849 Exonuclease V, alpha chain n=3 Tax=Propionibacterium acnes RepID=Q6A849_PROAC Length = 628 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 176/646 (27%), Positives = 277/646 (42%), Gaps = 80/646 (12%) Query: 7 LLEAVEHKQLRPLDVQFAL---TVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEA 63 L L D+ A + G+ + V+LA AL + G V + N Sbjct: 13 LEPFARAGVLEASDIHLANLVCRIGGETNCDVSLAIALSCRELRRGSVFWDPHEIANVVR 72 Query: 64 SHPLLATCVS-------------EIGELQNWEECLLASQAVSRGDEPT---PMILCGDRL 107 L E W L AS ++ D+P P L + Sbjct: 73 QQILDPAIPDIETSDQAALFAELEWPPPGEWLSTLEASPVIAGRDDPLNRLPARLDDGLV 132 Query: 108 YLNRMWCNERTVARFFNEVN----HAIEVDEALLAQTLDKLFPVSD--EINWQKVAAAVA 161 YL + W E VAR + V + ++ S Q AA A Sbjct: 133 YLEKYWQAEHDVARDLATLAADPPSQGPVSADDVVSSISNALAASGIMLDPAQADAAIAA 192 Query: 162 LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR 221 + R+SV++GGPGTGKTTTV LLAAL Q + LAAP+GKAAARL +S+ + Sbjct: 193 IMHRVSVLAGGPGTGKTTTVCALLAALQQADPHLGA-VALAAPSGKAAARLRDSVSQVSE 251 Query: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281 ++P + I DA+T+H LL Q + + L V+VVDEASM+ LP+ + Sbjct: 252 RMPDDLKP---IVADATTVHSLLKWQGPGTSFGYDEQHKLPFGVVVVDEASMLSLPLAAS 308 Query: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGT 341 L+ A+ R+I +GD QL SV+AG+VL DI + A Sbjct: 309 LLSAIGPQTRLILVGDPGQLVSVDAGSVLADIVSSA------------------------ 344 Query: 342 GTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVF--------------- 386 +A + + +L ++R D I +L+ A+ GDK+ V Sbjct: 345 --DALQAQLPVTILTCNHRSRGD--IARLSEAVREGDKSTALDVLATAAGVTHDSPSPDS 400 Query: 387 ------QQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQL 440 ++ T I+ + + E +A G + L + ++ + ++L Sbjct: 401 IATISGRRSITWIDADPASITMADLPAVAEVIARTGARMLELAQASADAAALKLVDAHRL 460 Query: 441 LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI 500 LCA REGP+GV ++R+ + + RW G ++ N + LG+ NGD G+ Sbjct: 461 LCAHREGPYGVDEWSQRMVTVLSD--VLPGVGQGRWVLGETAIVTHNLAQLGVNNGDCGV 518 Query: 501 ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV 560 ++ + P G + + S +P + AMT+HK+QGS+F ++LP +P+ Sbjct: 519 IVETRPVPTIALPGPGGVPRRLPCSLIPSLQPLQAMTIHKAQGSQFTDVTVVLPPPDSPL 578 Query: 561 VTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSS 606 ++REL+YTA+TRAR L++ + AI +RRSG+ + Sbjct: 579 LSRELLYTAITRAREHLTVVGTRESVERAIDRANDRRSGIQRRWEE 624 >UniRef50_A4JFN0 AAA ATPase n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JFN0_BURVG Length = 858 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 140/643 (21%), Positives = 218/643 (33%), Gaps = 108/643 (16%) Query: 4 QKQLLEAVEHKQLRPLDVQFALTVA--GDEHPAVTLAAALLSHD--AGEGHVCLPLSRLE 59 L EA + D+ VA ++ AAL AG G + + Sbjct: 149 PHLLTEAPGIGFFKADDLALRAGVATASEQRQLACARAALTEACDNAGGGARLGDVEQKV 208 Query: 60 NNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEP--TPMILCGDRLYLNRMWCNER 117 + G + + PM+ D + E Sbjct: 209 CHFLGANGAMGAPEARGRAPTALHMARQKGLLKDATDEQGRPMVFSAD------FFDAEE 262 Query: 118 TVARFFNEVNHAIEVDEALLAQTL---DKLFPVSDEINWQKVAAAVALTRRISVISGGPG 174 A + AL + + + Q+ A V R+++ISG PG Sbjct: 263 QCAHILLRMAKDQSPYHALDRKQALADAQEITGLKLLEQQQQAVEVLFEGRVAIISGKPG 322 Query: 175 TGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIP 234 GKTT LL + + + + + AAPTGKAA R+ +S+ + Sbjct: 323 AGKTT----LLKCVAPILEKDGRAVHYAAPTGKAAKRMRQSIER---------------- 362 Query: 235 EDASTLHRLLGAQPGSQRLRHHAGNPLH-LDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 ST+HR+LG G + R NPL +V+DEASM+D + ++ ++ ++ Sbjct: 363 -PTSTIHRMLGLGRGGAKARPDDENPLKTASAVVIDEASMLDAKLTLAILRSIGPKTLLV 421 Query: 294 FLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLC 353 +GD QL S+ AG VL D+ Sbjct: 422 LVGDPGQLPSIRAGKVLADLMDSNAFP-------------------------------TA 450 Query: 354 LLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEE-AL 412 L R G+ S I ++A AI+ G+ DFT + + LEE Sbjct: 451 RLTNVVRQGAQSDIVKVARAIDSGESP--------DFTLHPDSPPERKKSDCVFLEEPNA 502 Query: 413 AGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHP 472 G + + A+ D + + Q++ A GP G LN ++ Sbjct: 503 QRLGDRIANMLRNAQVDAKMDPLRDAQVIAASNVGPTGAVALNATLQAAFNPPEPNKPEL 562 Query: 473 HSR-----------WYEGRPVMIARND----------------SALGLFNGDIGIALDRG 505 H + G VM N+ G+FNGD+G + Sbjct: 563 HVKRTVKGVDQSFALRFGDKVMQTSNEASKALFDGPSDRSKPLEEKGIFNGDVGYIVAMD 622 Query: 506 QGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP-SQRTPVVTRE 564 +W +G+ ++A TVHK QGSE + S P++TR Sbjct: 623 -RVSMWVQFDNGHAHFSNDEARKSLTLSYANTVHKFQGSESPLIFFAMHESTPKPLLTRN 681 Query: 565 LVYTAVTRARRRLSLYADERILSAAIATR--TERRSGLAALFS 605 L YTA+TRAR + + ER L+ A R + L L S Sbjct: 682 LAYTAITRARTKCIVIGSERRLNEAAGRDALATRHTRLKGLLS 724 >UniRef50_UPI00016C66E9 RecD/TraA family helicase n=1 Tax=Clostridium difficile QCD-76w55 RepID=UPI00016C66E9 Length = 807 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 124/691 (17%), Positives = 225/691 (32%), Gaps = 161/691 (23%) Query: 2 KLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAA---LLSHDAGEGHVCLPLSRL 58 + L++ + D AL + + L A LL GH LPL + Sbjct: 185 ENPYMLIKEIRGYGFLKCDK-IALDLGIELDNINRLKAGVKFLLQEALLSGHCYLPLELI 243 Query: 59 ENNEASHPLLA--------------TCVSEIGELQNWEECLLASQAV------------- 91 + + L+ + + + ++ LLA + Sbjct: 244 IEDAINLLNLSLSYKEMCSCNKSSSDEIIKFDKTYKLDKYLLAEKICLYEKNKKTKNNYI 303 Query: 92 -------------SRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVD-EALL 137 ++ D +YL ++ +E+ +A + ++ + + Sbjct: 304 LFSIKEELILEAIEELINENEIVNEDDCIYLKYLYLSEKLLAERLKLFTNYNQIYIKDEV 363 Query: 138 AQTLDKLFPVSD--EINWQKVAAAVAL--TRRISVISGGPGTGKTTTVAKLLAALIQMAD 193 + L+++ + Q+ A + V++G GTGKT T+ +L +++ Sbjct: 364 EKVLNEVCSEKGYILEDKQREACIEFNLYNNGLFVLNGPAGTGKTFTLNLILEVAKRLSK 423 Query: 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRL 253 + +I APTGKA+ + + D ST+HR LG P Sbjct: 424 -RKLKIEAVAPTGKASKVVRNATYM-----------------DCSTIHRSLGYVPY-MGF 464 Query: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDI 313 + N + D++V DE +MID+ + I A+ +++I +GD QL SV G VL DI Sbjct: 465 TMNEFNQFNKDIIVCDEGTMIDIELGWNFIKAIKTTSKLIIMGDVHQLPSVGPGTVLKDI 524 Query: 314 CAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAA 373 + L R SGI + A Sbjct: 525 IESQIV-------------------------------KVITLDVLKRQDLLSGIAKNANG 553 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGE-DYIAMLEEALAGYGRYLDLLQARAEPDLII 432 + +DF +E+ ++ I+ + + YG Sbjct: 554 VVEKKM-VCPNEEDKDFYVLERDSVRKVRLAVISSIRRLVDKYG---------------- 596 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRK------------------IHRHPHS 474 E Q+L R G G N I++ Sbjct: 597 --LEEIQVLLPQRTGSLGTNVFNYIIQKEFNPYANSEKKVLKTKFEAQIAEVGAPEEVSL 654 Query: 475 RWYEGRPVMIARNDSALGLF----------------NGDIGIALDR----GQGTRVWFAM 514 + V+ +N+ + L+ NG+ G+ D G RV Sbjct: 655 FIAKNDKVIHVKNNYNMALYELKDGSFKKINKTDVTNGECGVVYDVVPLEKGGLRVIVQY 714 Query: 515 PDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRAR 574 + + E E ++A+T+HKSQGS + L + Q ++ L+YT +TRAR Sbjct: 715 D--EYFAFYDDGVDELELSYAITIHKSQGSAWRAILLPIVPQHIYMLYNNLIYTGMTRAR 772 Query: 575 RRLSLYADERILSAAIATR--TERRSGLAAL 603 L++ + + I +R + L Sbjct: 773 DFLAMIGSIKTIQQGIKKDIAIKRNTKLKDR 803 >UniRef50_B0SIS5 Exodeoxyribonuclease V, alpha subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SIS5_LEPBA Length = 600 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 136/561 (24%), Positives = 225/561 (40%), Gaps = 66/561 (11%) Query: 91 VSRGDEPTPMILC----GDRLYLNRMW----CNERTVARFFNEVNHAIE---VDEALLAQ 139 + + + P ++ +RLYL + E + F N + + + + Sbjct: 52 IDKMKDYFPFVIERTGKENRLYLQKSHSEKRNFESLLFTFLNHKTNQTKNTTITADQIKT 111 Query: 140 TLDKLFPVSD--EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 + L S Q+ +T VISGGPGTGKTT V+ +L A ++ Sbjct: 112 IISGLETESKIKLAEEQRETIQDVITSNFRVISGGPGTGKTTVVSFILMAFDRLKLLPSM 171 Query: 198 -RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHH 256 RI L APTG+A+ RLTES+ + L + T+H LL P + + + Sbjct: 172 ERIALVAPTGRASQRLTESIQRNLEKFQADPSLTSNFR--GQTIHNLLKINPTTNQAKFG 229 Query: 257 AGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC-- 314 L D +++DE SM+DL +M+ A+ +I LGD +QL SV G VL D+ Sbjct: 230 EKRYLPYDFIIMDETSMVDLKLMNLFFSAIHFDTHIILLGDPNQLPSVGQGEVLTDLITT 289 Query: 315 ---------------AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 ++N + A + + T+ + S L+ + Sbjct: 290 LKNKKEFLSELNSNHRFSNDSEFSVFAEIVKQSFDTNSNTKPFPLPKMITKSDLNLKHDF 349 Query: 360 R--FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGR 417 G G+ + +IE + E + + + Sbjct: 350 VWIQGDKK------TKSTNGNHPEIHDW------NIESMVPFLWETFYLHTANKTSKFHW 397 Query: 418 YLDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERI-----EQFMQQKRKIHRHP 472 + L+ + NEY+ L LR G FG+ + +I +Q K + H Sbjct: 398 EPNALKDPKNKFIFESIVNEYRCLTILRNGYFGIEAIQGQILRYAKKQLTNPKNEFHLKY 457 Query: 473 HSR----WYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLP 528 ++EG P++I ND LFNGDIG+ + R F + D + S LP Sbjct: 458 RQLSKSFYFEGMPIIIQSNDPMRKLFNGDIGLVVSIHSELRAVFPIED-RLYSFALDTLP 516 Query: 529 EHETTWAMTVHKSQGSEFDHAALILPSQRT---------PVVTRELVYTAVTRARRRLSL 579 +HE + +T+HKSQGSE+ L LP ++ R ++YTA+TRA+ R+ L Sbjct: 517 DHEPAFFLTIHKSQGSEYKSILLYLPPMNVLDVDSENNLSILNRRILYTAITRAKERVIL 576 Query: 580 YADERILSAAIATRTERRSGL 600 D + + + +R +G+ Sbjct: 577 LGDFQTWEFGLQSFRKRYTGI 597 >UniRef50_A6P2H5 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P2H5_9BACE Length = 512 Score = 314 bits (804), Expect = 8e-84, Method: Composition-based stats. Identities = 128/552 (23%), Positives = 202/552 (36%), Gaps = 84/552 (15%) Query: 57 RLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNE 116 L + S + + E+ A + + + + G R+YL + E Sbjct: 20 ELAGDAYSTAEELYQLCKQKHPSLSEDAFRADKTFLQ--KEGRIAQEGRRIYLAKTLAYE 77 Query: 117 RTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTG 176 A+F ++ E+ AL Q + ++ Q+ A + R+S+I GG GTG Sbjct: 78 NAAAQFLADILSNNELQSAL--QDMPASTELTTLTGEQQSAIRMVFGHRLSLILGGAGTG 135 Query: 177 KTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPED 236 KTT V L+A A L APTGKAA LTE G Sbjct: 136 KTTLVRGLIA----QAPHRLSSCILCAPTGKAARNLTERTG-----------------VQ 174 Query: 237 ASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLG 296 A T+H LG +P L + ++V+DEASM+ L M++ ++ + A V+ +G Sbjct: 175 ARTVHGALGLRPEENFLGPVYWDL--TGLVVIDEASMMTLEMLAGILHKVSPFAHVVLIG 232 Query: 297 DRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQ 356 D +QL SV AG VL D+ A L Sbjct: 233 DPNQLLSVGAGNVLTDLLALGVP--------------------------------CTQLT 260 Query: 357 KSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYG 416 +R + + L + + + D + A+ Y Sbjct: 261 ICHRQSAQAA--ALGHNVRHFQECRSLADLRFDNSFYFVPQTDEKRICQAVCCGGAKLYR 318 Query: 417 RYLDLLQARAEPDLIIQAFNEYQLLCALR-EGPFGVAGLNERIEQFMQ---QKRKIHRHP 472 Q+L R G V+ LN+ + + + P Sbjct: 319 MGGST-----------------QVLSPFRSSGKLSVSSLNDALRDMLNPAVPANQNPDWP 361 Query: 473 HSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIK-SVQPSRLPEHE 531 + + EG VM+ ND + NGD+G Q + P + + Sbjct: 362 DACFREGDRVMVLENDWQQMVCNGDVGHFYFLSQPGSFGISCPGQRRACWIGENPSDRLS 421 Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIA 591 +A+TVHK+QGSE+D L L ++TR L+YTA++RAR+ + L D L A+ Sbjct: 422 LAYAITVHKAQGSEYDMVILPLVKSFGVMLTRNLLYTAISRARKHVVLVGDPDALEEALR 481 Query: 592 TRTE-RRSGLAA 602 + R+S L A Sbjct: 482 QEPKPRKSQLVA 493 >UniRef50_Q6N7J7 Possible Viral (Superfamily 1) RNA helicase n=1 Tax=Rhodopseudomonas palustris RepID=Q6N7J7_RHOPA Length = 1253 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 145/654 (22%), Positives = 245/654 (37%), Gaps = 92/654 (14%) Query: 14 KQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAG-EGHVCLPLSRLENNEASHPLLATCV 72 +++ PL Q +T D+ L + +L H EGH LP S + + PL CV Sbjct: 480 REIAPLPAQARMTDGIDKRRVRALISDMLEHAVQNEGHTLLPRSWIVSRATGAPLDPRCV 539 Query: 73 SEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNH---- 128 + + + L + +R + + L R + + ++ Sbjct: 540 VDEDVIDMVADYLALTLETARTSDDELALK------LRRYGASRTAITSAVHKRVGGKRH 593 Query: 129 ------AIEVDEALLAQTLDKLFPVSDEINWQKV-AAAVALTRRISVISGGPGTGKTTTV 181 VD L V + +K A R SV+ G G+GKTT Sbjct: 594 SIVHKWRALVDAVLPPMEAGPEAEVEELARREKSGALEQLACGRFSVLIGPAGSGKTT-- 651 Query: 182 AKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLH 241 LL L + + I L APTGKA RL E+ + L A L Sbjct: 652 --LLKVLCDLPEISSGGILLLAPTGKARVRLEEATKRLGEGQTL-----------AQFLQ 698 Query: 242 RLLGAQPGSQRLRHHAGNPLH--LDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRD 299 R S R + P ++VDE SM+ +S LIDA+ R+I +GD Sbjct: 699 RYERYDGASGRYFRNPKAPREKGYRSVIVDECSMLTEDQLSALIDAIEGVDRLILVGDPR 758 Query: 300 QLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSY 359 QL + AG DIC +E Q ++ + LL + + Sbjct: 759 QLPPIGAGRPFVDICRKLAP---SEETPQFPKVAPGYAELTIIGRQRGTDRGDVLLARQF 815 Query: 360 -RFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEAL------ 412 D+G ++ A+ G + V+T +D+E RL +A+ + + Sbjct: 816 SGEPLDAGADEVWEALRSGTLSHVRTAHWALPSDLEPRLTDEIVRGLALADRSDQRGFEL 875 Query: 413 ----AGYGRYLDLLQARAEPDLII--QAFNEYQLLCALREGPFGVAGLNERIEQFMQQK- 465 + + ++ + RA+ +A +++Q+L +R G GV +N I++ + K Sbjct: 876 SIGGSEWEGHVLFWERRADQREGGAAEAAHDWQILSPVRAGAPGVEAINLAIQRRFRNKV 935 Query: 466 ---------RKIHRHPHSRWYEGRPVMIARNDSALG---------LFNGDIGIALDRGQG 507 + G V+ RN+ + NGDIGI + + Sbjct: 936 RERALTPNAKYPKPAGPQGILWGDKVINLRNNGRRRTYPRQEKPYVANGDIGIVVGGYKR 995 Query: 508 TRVWFAMPD---------GNIKSVQPSRL------PEHETTWAMTVHKSQGSEFDHAALI 552 ++ F D G + PE E +A+T+HK+QGS+F+ ++ Sbjct: 996 GKMKFRPRDLEVEFASQPGVKFTYYAGEFSGEEGTPELELAYALTIHKTQGSQFERTFVV 1055 Query: 553 LPSQRTPVVTRELVYTAVTRARRRLSLYADER--ILSA----AIATRTERRSGL 600 LP + ++REL+YTA+TR + L+L ++ L + + R + L Sbjct: 1056 LP-RHCRPLSRELLYTALTRHQEELNLLHEDDIGALRRYSDPSASEIARRMTDL 1108 >UniRef50_B7C7R4 Putative uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7R4_9FIRM Length = 351 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 87/419 (20%), Positives = 168/419 (40%), Gaps = 79/419 (18%) Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 +I+L APTG+A+ RL + D+ T+H LL Sbjct: 6 PDSKIQLCAPTGRASKRLAQ-----------------LSNCDSRTIHSLLQWNLEDNSFG 48 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 + +PL +D ++VDE SM+D + ++L+ ALP+ R++ +GD DQL SV G VL D+ Sbjct: 49 KNEDDPLDVDFIIVDEFSMVDTHLFAQLLKALPNRCRILLIGDEDQLESVGPGKVLEDLI 108 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI 374 L+K +R + SGI LA I Sbjct: 109 KSNVID-------------------------------TVHLKKIFRQSNGSGIVTLAKEI 137 Query: 375 NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQA 434 ++ IE+ + + I +++ Sbjct: 138 RE----ETTCHYEDGVEFIERTTPKIMDALIDYVKDM----------------------D 171 Query: 435 FNEYQLLCALREGPFGVAGLNERIEQFMQQK---RKIHRHPHSRWYEGRPVMIARNDSAL 491 + Q+L + +G G+ +N +++ K + + + + E VM+ +N Sbjct: 172 LDSMQILAPMYKGVAGIDEINRQMQVLFNPKSPQKNQMKVGTTIFRENDKVMLLKNLPDD 231 Query: 492 GLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAAL 551 ++NGDIG ++ V N+ L + W ++VHKSQG+E+ Sbjct: 232 DVYNGDIGTIVEIDTKRNVISVDFTNNVVDFSTDFLYYLKHAWCISVHKSQGNEYQSVFC 291 Query: 552 ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAALFSSRE 608 I+ ++ + L+YTA++RA+++L + ++++ + + + R++ L + + + Sbjct: 292 IVDVNAKNMLEKRLLYTAISRAKKQLYIIGNKQLFETQVKLKQKRVRQTTLREMINLVQ 350 >UniRef50_D1J8K8 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8K8_MYCHP Length = 747 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 207/591 (35%), Gaps = 100/591 (16%) Query: 32 HPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS-EIGELQNWEECLLASQA 90 PA L + L + G+ + L + + T ++ N E L+ ++ Sbjct: 234 KPATHLYKSFLKYLYNSGNTRILKDYLYDQLINFASQDTEWPRDVETFNNSVELLVQNKY 293 Query: 91 VSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE 150 + + G L ++ E+ + + + + P Sbjct: 294 LIEIEYE-----DGTYLSAKDVFDMEKYIVKRLKHIESSSNP-------KFINFMPSEMF 341 Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 Q A ALT ++++I+G PGTGKT +++ L+ + D + I PTG+A Sbjct: 342 HPLQLQAIETALTSKLTLITGNPGTGKTLITNEIIKQLLSVYDEDDLAIV--TPTGRATI 399 Query: 211 RLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDE 270 + + +A T+H L + + + N ++ L++DE Sbjct: 400 NIN----------------NIQEKTNAVTIHSFLEWDVDNDKFMINEKNAKPIECLIIDE 443 Query: 271 ASMIDLPMMSRLIDALPDHA--RVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ 328 SM+ + + L+ + ++ R+I +GD+DQL ++ AG ++ D Sbjct: 444 FSMVSVDLFYSLLKGIKKNSLKRIILVGDKDQLPAIGAGYLIRDFIESNI---------- 493 Query: 329 LSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQ 388 +L K +R + I Q A IN+G K Sbjct: 494 ---------------------FQTIVLSKIFRQAENFDIIQDALDINKGKLPEFK---GN 529 Query: 389 DFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGP 448 + IE + + L DLLQ + +L + Sbjct: 530 NSQFIETKQSDLKSMLLFKLN----------DLLQQGYSKR-------DIAILSPIYNYE 572 Query: 449 FGVAGLNERIEQFMQ--QKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQ 506 G+ +NE + F + + ++ V+ ND +FNG+IG G Sbjct: 573 TGIDQINETLNNFFRKLDGNEQIKYRDHVLAIDDKVINLVNDPKTKVFNGEIGYISHFGF 632 Query: 507 GTR----------VWFAMP-DGNIKSVQPSR-LPEHETTWAMTVHKSQGSEFDHAALILP 554 + + D S + +VHK QGSE ++L Sbjct: 633 ENKKNSFEKVLASISVEFENDSKTVSYSRKDFFANTYPAYCTSVHKYQGSECKCVIVVLF 692 Query: 555 SQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE--RRSGLAAL 603 S+ +++++L+YTA+TRA++ + ++ L I + R + + L Sbjct: 693 SEAKKLLSKKLIYTAITRAKKYCVVIGEKEALITGINNDDDSNRITNIKYL 743 >UniRef50_C6J5U6 Exodeoxyribonuclease V (Fragment) n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5U6_9BACL Length = 378 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 94/428 (21%), Positives = 160/428 (37%), Gaps = 81/428 (18%) Query: 193 DGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR 252 I L APTG+AA +L E G +ST+H +LG +PG++ Sbjct: 4 HYPEASIGLCAPTGRAARKLGELTGMN-----------------SSTIHMMLGFRPGAE- 45 Query: 253 LRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGD 312 + PL D++ DE SM DL + L A+ + +V+ +GD DQL SV G VL D Sbjct: 46 PEYGDDMPLPFDLIFTDEVSMKDLQLAYHLFQAIGPNTKVVLIGDSDQLPSVGPGNVLHD 105 Query: 313 ICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA 372 + L + +R +S I A Sbjct: 106 MITAGVPH--------------------------------VRLTEIFRQAQESQIIMNAH 133 Query: 373 AINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLII 432 IN G+ V + DF IE+ + + + R+LD Sbjct: 134 RINNGE-QIVIDKNKDDFFFIEQPEPERIAHLVVL------SVLRFLDK----------G 176 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQ---KRKIHRHPHSRWYEGRPVMIARNDS 489 + +L +++G G LN ++ + + + + +G V+ RND Sbjct: 177 HKLEDILVLSPMKKGVIGTEELNNALQAAVNPPALDKAEIKTVGRIYRQGDKVIQIRNDY 236 Query: 490 ALGLFNGDIGIALD----RGQGTRVW-----FAMPDGNIKSVQPSRLPEHETTWAMTVHK 540 + NGDIG+ + + + + G + L + +A+T+HK Sbjct: 237 KKKILNGDIGVVIGTALVKDEEGELTDEIGLACDFHGKVVVYSKHELKDLLLAYAITIHK 296 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT--ERRS 598 +QG + + + + ++ R L+YT +TRA + + LS AI+ +R + Sbjct: 297 AQGGQAPVVIMPVSTSHYVMLARNLIYTGLTRAEGVCVMIGTRKALSVAISNNKMVQRNT 356 Query: 599 GLAALFSS 606 L S Sbjct: 357 ALRERIES 364 >UniRef50_Q3AX67 DNA helicase/exodeoxyribonuclease V, alpha subunit n=5 Tax=Synechococcus RepID=Q3AX67_SYNS9 Length = 530 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 151/574 (26%), Positives = 230/574 (40%), Gaps = 80/574 (13%) Query: 22 QFALTVAGDEH-PAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQN 80 + + + P + + L +G++ +PL + E+ Sbjct: 17 ALVRRIPPNRNGPELEQLSLALIEALEQGNLTVPL-------------SPEREELVRQSG 63 Query: 81 WEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA------IEVDE 134 W E E +P++L G RL R V E Sbjct: 64 WLE-----------GEASPLVLQGQRLGWRRWMQAMDDVVEALVERATPSDPLPTDPSPT 112 Query: 135 ALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG 194 + + P S Q+ A + +ISGGPGTGKT+TV +LLA + Sbjct: 113 DPRSTDPGAIDPPSSLNREQRDAVLALDQASVVLISGGPGTGKTSTVVELLARV--QLHH 170 Query: 195 ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLR 254 R+ LAAPTGKAA RL +++ L+ LP TLHR L A G+ Sbjct: 171 PDLRMGLAAPTGKAARRLGDAVRPRLKGLP------------CGTLHRWLEA--GAHGFA 216 Query: 255 HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDIC 314 HA PL LD+LV+DE SM+DL +M L+ ALP R++ +GD QL V +GAV + Sbjct: 217 RHAERPLKLDLLVIDEMSMLDLALMQALLSALPPCCRLVLVGDPAQLPPVGSGAVWHRLQ 276 Query: 315 AYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAA-A 373 A L + A G + + A Sbjct: 277 QSDVRERFGTGAIHLKQTYRNRGAVAQLASALREGGIDAF------QGGLAELDAEANVR 330 Query: 374 INRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQ 433 I+R + + ++ + +RLLQ E + E L+G + + ++ Sbjct: 331 IHRESSRRLPPMIRRHWQGHHRRLLQLSEGLLDCSEAELSG------------QAEPLLA 378 Query: 434 AFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGL 493 A + +LC R GP+ + ++ + ++ RW G PV+ N LGL Sbjct: 379 ALEQNLVLCPRRRGPWSLEDVHRSL------LGEVIAADPRRWPSGLPVICGGNQPELGL 432 Query: 494 FNGDIGIALDRGQGTRVWFA--MPDG--NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549 NGD+GI + G +R+ F DG +K + P+RL E A+T+H++QGSE D Sbjct: 433 ANGDLGITVGAGDQSRLLFRVATDDGGVEVKRLHPARLRRLEPAVALTIHRAQGSEADAV 492 Query: 550 ALILP----SQRTPVVTRELVYTAVTRARRRLSL 579 ++ P S L+YTA+TRAR L L Sbjct: 493 FVLWPQPLDSPDGSDHDCRLLYTAITRARVSLDL 526 >UniRef50_A4A3A3 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3A3_9GAMM Length = 742 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 118/625 (18%), Positives = 210/625 (33%), Gaps = 130/625 (20%) Query: 16 LRPLDVQFAL-TVAGDEHPAVTLAAAL---LSHDAGEGHVCLPLSRLENNEASHPLLATC 71 +D FA V + L AA+ L G C ++++ Sbjct: 214 WNRVD-HFARERVGVKINDTRRLCAAVEEALYRILKTGSTCASRTQVKRKLVD------- 265 Query: 72 VSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHA-- 129 + L+ A++ E ++ L W ER+VA++ + A Sbjct: 266 -------SILGDSKLSESALTIAAESGNVVEHDQMLATTGSWLIERSVAQYIELLAGAKM 318 Query: 130 -----------IEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKT 178 +D + ++ + QK A +A T ++ +I GG GTGKT Sbjct: 319 EASQLQLSNKHPSIDATIAKFEVE---EGYELTAEQKDAVRMAATNKLCLIIGGAGTGKT 375 Query: 179 TTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDAS 238 T + L + A +I A GKAA R+T++ + AS Sbjct: 376 TVLKCLYQVIN--ASEPFAQIYQMALAGKAALRMTDATAR-----------------PAS 416 Query: 239 TLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDR 298 T+ + N +V+DE+SM+D+ + ++ LP R++ +GD Sbjct: 417 TICAFTK--------NNDQDNIPPGSWIVIDESSMVDVLSFANILSRLPSGCRIVLVGDP 468 Query: 299 DQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKS 358 QL V G VL + + G L+ Sbjct: 469 YQLPPVGPGKVLNALVDLPSLGR-------------------------------VELKVV 497 Query: 359 YRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 R +GI +A + G + D + E + + + + Sbjct: 498 KRQSGKTGIPLVAGNVREGKWPEIGVSEVGDLSAEEGVFFINSGSPLDTVVDLYGR---- 553 Query: 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKI---------- 468 + Q++ L + LN R ++ +I Sbjct: 554 -------------LLGLGSVQIIAPLVKA---CDELNVRCQEKYNSSSEIASWHSDVNLS 597 Query: 469 HRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGTR----VWFAMPDGNIKSVQP 524 + R+ G PV+ ND L NG +G+ + + +GN Sbjct: 598 DKIAFGRYRVGDPVIFKINDYDRDLRNGSMGLVSAVHEAREAQDTLCTISFEGNSIEANQ 657 Query: 525 SRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER 584 S L +A+TVHKSQGS++D + + V R ++YTA+TR+ +++ L + Sbjct: 658 SDLQNVSLAYAITVHKSQGSQWDRVLMPV-MADARNVERSMLYTAITRSVKQIVLVGCQE 716 Query: 585 ILSAAIATRT--ERRSGLAALFSSR 607 + A+ +R L L ++R Sbjct: 717 AVRNAVKRVAVDDRAVNLGKLLAAR 741 >UniRef50_C5B4H6 Putative Helicase, RecD/TraA family n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4H6_METEA Length = 864 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 135/613 (22%), Positives = 218/613 (35%), Gaps = 99/613 (16%) Query: 28 AGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLA 87 AGD+ + A+L GEG LP ++ A+ + E Sbjct: 213 AGDDRRIESAVLAVLDRARGEGSTGLPAAKAAEEAAALLGRDGGMRAQVENWLLAAAGRR 272 Query: 88 SQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEV-DEALLAQTLDKLFP 146 V P + ++L + E VAR ++ A V A + ++++F Sbjct: 273 DGPVRVDRSPKGFV-----VHLPELLVAEAYVARRIMDMLRAPPVHTPARVDAAMERVFA 327 Query: 147 VSDEINW----QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 + + Q+ A A ++ +++GGPGTGKTT L+A L ++ + I L Sbjct: 328 ANPKFARFDAVQREAVRSAALSQVFILTGGPGTGKTTVTEALIAVLEELGHRQ---IDLV 384 Query: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQR----LRHHAG 258 APTGKAA R + + + A TLHR L A+ + + Sbjct: 385 APTGKAAKRASAATKR-----------------KALTLHRRLLAREDKKTGGSMFGVNRE 427 Query: 259 NPLHL-DVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 NPL VL+VDE SMID M+ ++DALP R++ +GD QL SV AG VL D+ + Sbjct: 428 NPLPAGTVLLVDETSMIDAQTMAAVVDALPPDGRLVLIGDPHQLPSVGAGNVLADLLSA- 486 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 + L YR S I + + + G Sbjct: 487 -------------------------RTGSRPLVPSVGLVNIYRQEETSSIARESRTVKDG 521 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNE 437 + + E E+ + ++ + L + + Sbjct: 522 KVPFMDNKVRGGLAFYEHDASDIAEEIVRLVTGPMRA--------------QLGLDPARD 567 Query: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHR--------HPHSRW-YEGRPVMIARND 488 ++ GP G LN R+ + + P G VM +ND Sbjct: 568 VAVMSPQAPGPAGTWELNARLSAALNPGGRAIEGVFHGPRDDPKMPLPRVGDRVMATKND 627 Query: 489 SALGLFNGDIGIALDRG-------QGTRVWFAMPDG------NIKSVQPSRLPEHETTWA 535 +FNGD+G Q + A + +R E +A Sbjct: 628 EENDVFNGDVGTVAGVEDRNADGRQKRVIKVAFDPDAPGARPRLVEYPVTRWRELILAYA 687 Query: 536 MTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE 595 T+HK QGS+ A ++ S ++ R ++YT TR L + + L A++ R Sbjct: 688 CTIHKMQGSQATAAVIVASSAHAGMLDRTILYTGWTRPEELLFVVGERSALEDAVSRRAS 747 Query: 596 --RRSGLAALFSS 606 R + LA Sbjct: 748 DLRWTRLAEFVER 760 >UniRef50_A5IZI9 Exodeoxyribonuclease V alpha chain n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IZI9_MYCAP Length = 756 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 119/541 (21%), Positives = 208/541 (38%), Gaps = 93/541 (17%) Query: 82 EECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTL 141 ++ ++ S V RL LN ++ E VA+ I++ ++ L Q + Sbjct: 290 DDLIIESLNVMIQRGEVYFDSDSKRLSLNEVYEQELFVAK------KLIKIRDSELKQQV 343 Query: 142 DKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRL 201 + L QK A A AL +SVI+G PGTGK+ +A ++ L++ ++ I + Sbjct: 344 NPL-TSQKLAEEQKKAYASALNNPLSVITGYPGTGKSYLIAYIVETLLKDKHYKKKDIAV 402 Query: 202 AAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQP--GSQRLRHHAGN 259 PTG+A+ L G +A T+H L Sbjct: 403 LTPTGRASTILAYKTGI-----------------EARTIHSFLKLSKPDEDDSFIESFEK 445 Query: 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANA 319 + V+V+DE SM+ LP+M L+ R+I +GDRDQL + G +L DI Sbjct: 446 ENPIKVVVIDEFSMVSLPIMYELLKTCTSIERLILVGDRDQLPCIGKGNLLEDIINSKKL 505 Query: 320 GFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDK 379 +L++ +R I + AIN Sbjct: 506 P-------------------------------TFVLKEIHR-TDKIDIFEHFIAINDNKV 533 Query: 380 TAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQ 439 + T ++ IE+ + + + + EE + Y + Sbjct: 534 PKIDT---ENVKFIEQNGILFLNNIVKIYEEKVNKYS------------------IDNVI 572 Query: 440 LLCALR--EGPFGVAGLNERIEQFMQQ----KRKIHRHPHSRWYEGRPVMIARNDSALGL 493 +L G G+ +N+R++++ + K+ + H + + G V+ ND + Sbjct: 573 ILLPSYLELGQPGINEVNKRLQEWNIKRTGAKKNLSIHNNLTLFVGDRVIQTVNDYDKNV 632 Query: 494 FNGDIGIALDRGQGTR---VWFAMPDGNIKSVQPSR-LPEHETTWAMTVHKSQGSEFDHA 549 FNG+IGI + ++ + G S L +A+TVHK QGSE Sbjct: 633 FNGEIGIVEEINTDSKNTFIIVGFGQGKKVRYNRSEILENLSLAYAITVHKFQGSEASCV 692 Query: 550 AL-ILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRT---ERRSGLAALFS 605 IL ++ + T++ +YTAV+RA+ L L + + I +R + + L +L Sbjct: 693 IFGILKNRVEHMFTKKFMYTAVSRAKEELLLLGSKDLYIQKIQSRNADLKHYTNLKSLIE 752 Query: 606 S 606 Sbjct: 753 K 753 >UniRef50_B5IMW7 Exodeoxyribonuclease V, alpha subunit n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IMW7_9CHRO Length = 548 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 153/583 (26%), Positives = 235/583 (40%), Gaps = 78/583 (13%) Query: 19 LDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVSEIGEL 78 L PA+ ++ +G + LPL E Sbjct: 21 LAEALPRLYGCPADPAIPAVIDAMARALADGELELPLPDPEQR----------------- 63 Query: 79 QNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLA 138 L AS S +P++L GDRL R + V L Sbjct: 64 ----RHLAASPLCS--GPWSPLVLDGDRLLWRRWHQQRQGVLESLGRRAGPAAAHPCSLE 117 Query: 139 QTLDKLFPVSDEIN-WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC 197 Q + + ++ Q+ A A L + ++ GGPGTGKT+TV ++LAAL A Sbjct: 118 QARQQAAGHGEGLDAEQRRAVAAVLHYGLVLLEGGPGTGKTSTVTRMLAALR--AHAPGA 175 Query: 198 RIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHA 257 R++LAAPTGK A R + STLHRLL +Q +R H Sbjct: 176 RMQLAAPTGK----------AAARLRAAIAGAGSGLALPCSTLHRLLESQ--GERFARHR 223 Query: 258 GNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA 317 +PL LD+LV+DE SM+DL +M ++DALP R++ +GD QL V GAVL ++ + Sbjct: 224 HHPLELDLLVIDEVSMVDLALMGAVLDALPARCRLVLVGDAAQLPPVRPGAVLVELQSPR 283 Query: 318 NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRG 377 G +L + + R G++ G A + RG Sbjct: 284 WRGALGGAVVELRTTYRNNGAIAQVAG------------QLRRQGAEPGELGAATS-WRG 330 Query: 378 DKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQ-----ARAEPDLII 432 ++ ++ + ++ R +LE + L R+ ++ Sbjct: 331 LRSTLEQLPAN--ANLGWRPASPRRLPPELLERLRQHQLQLQRLALSLEPGDRSAARALL 388 Query: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492 Q + +L +R G +GV ++ + P W G PV+ RN LG Sbjct: 389 QELDTLLVLSPVRRGRWGVEAVHRAL------LGDTVEQPIQAWPIGTPVLCQRNLGDLG 442 Query: 493 LFNGDIGIALDR-----------GQGTRVWF-AMPDGNIKSVQPSRLPEHETTWAMTVHK 540 L NGD+GI + G+G RV F DG + + P++LP+ + A+TVHK Sbjct: 443 LANGDVGILVGAAAAAGAGRSPGGEGRRVLFAPGGDGELLWLHPAQLPDPQPALALTVHK 502 Query: 541 SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE 583 +QGSE +++P P T L+YTA+TRAR++ L Sbjct: 503 AQGSEALEVWVLMPDSSRP--TDRLLYTALTRARQQAQLITPP 543 >UniRef50_C1XYZ4 Putative uncharacterized protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XYZ4_9DEIN Length = 641 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 132/593 (22%), Positives = 214/593 (36%), Gaps = 126/593 (21%) Query: 14 KQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEASHPLLATCVS 73 R A + L A +GH P A L Sbjct: 163 GLTRAEADHLARRHGREGLAPQGQILEELLEQARQGHTFPPYPHPLPEAARPLL------ 216 Query: 74 EIGELQNWEECLLASQAVSRGDEPTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVD 133 T + RL L R E+ +ARFF + + Sbjct: 217 -----------------------DTLLYREPGRLGLTRYVQAEQAIARFFRRRPAPLRLA 253 Query: 134 EAL--LAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQM 191 L Q +L+P +E ++++GGPGTGK+ T AAL++ Sbjct: 254 PPPAGLTQEQRQLWPRVEE--------------GHALLTGGPGTGKSYT----CAALLEA 295 Query: 192 ADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQ 251 A R + L APTGKAA RL+E A T+H LG + Sbjct: 296 AHRARLEVVLLAPTGKAAVRLSELADH-----------------QAHTIHARLGW--DGE 336 Query: 252 RLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLG 311 R H +PL D++VVDEASM D+ +++ L+ AL H ++ +GD DQL V GA Sbjct: 337 RFAHGPHHPLSADLVVVDEASMADVELLAALVAALSPHTHLLLVGDADQLPPVGPGAPFQ 396 Query: 312 DICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLA 371 D+ L + R + + +L+ Sbjct: 397 DLLRGPTPQ--------------------------------VRLTQLQRRAREHPVTRLS 424 Query: 372 AAINRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLI 431 G + + RL ++ + +LE+ +G+ Sbjct: 425 YQFRAGQLEPPHSEEG-----LSWRLGETSQVLQWLLEDTQRLWGK-------------- 465 Query: 432 IQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKR-KIHRHPHSRWYEGRPVMIARNDSA 490 +Q+L + GP G+ LN +++ + R G P++ RND A Sbjct: 466 ----TRFQVLAPVYRGPLGIEALNRVLKERLNPGGYPDWRLGGLPVAPGDPLIQLRNDYA 521 Query: 491 LGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA 550 LGL NG + + + DG+ K + S+ +A+++H+SQGS++ Sbjct: 522 LGLANGQLMEVQSADAQ-SLLVRLDDGSYKPIPRSQSRHLRHAFAISIHRSQGSQWPCVL 580 Query: 551 LILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTE-RRSGLAA 602 L++ + V RE++YT +TR++ LY A+A R R++ L+ Sbjct: 581 LVVSREHGAFVNREMLYTGLTRSQHSAILYGQLEAYRDALARRASGRQTWLSQ 633 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.132 0.362 Lambda K H 0.267 0.0405 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,334,735,074 Number of Sequences: 3077464 Number of extensions: 138057548 Number of successful extensions: 635955 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2669 Number of HSP's successfully gapped in prelim test: 5018 Number of HSP's that attempted gapping in prelim test: 608320 Number of HSP's gapped (non-prelim): 18257 length of query: 608 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 473 effective length of database: 624,938,716 effective search space: 295596012668 effective search space used: 295596012668 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 96 (41.6 bits)