BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (69 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R...   102   4e-21
UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI       100   2e-20
UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX              47   2e-04
UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero...    47   3e-04
UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID...    45   8e-04
UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax...    44   0.002
UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp...    43   0.003
UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9...    43   0.004
UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK...    40   0.023
UniRef50_C4TZJ3 Putative uncharacterized protein n=1 Tax=Yersini...    40   0.030
UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba...    39   0.041

>UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26
          Length = 70

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/69 (73%), Positives = 57/69 (82%)

Query: 1  MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEV 60
          MLNTCR+     K KEK+AMKQ KAM++ALIVIC+T +V ALVTRKDLCEV IRTGQTEV
Sbjct: 1  MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEV 60

Query: 61 AVFTAYESE 69
          AVF  YESE
Sbjct: 61 AVFVDYESE 69


>UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI
          Length = 50

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 20 MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE
Sbjct: 1  MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50


>UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX
          Length = 52

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 30/44 (68%)

Query: 25 AMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
          +++  ++++C+T ++   +TRK LCE+  R G  EVA F AYES
Sbjct: 7  SLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYES 50


>UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae
          RepID=D2TJU7_CITRO
          Length = 50

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
           K ++ +LIVIC+T ++   + R  LCE+HIR G  E+A F A E
Sbjct: 3  QKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACE 47


>UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ
          Length = 52

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 26 MIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
          +   +++ICIT ++   +TR  LCE+ ++ GQ E A F AYES
Sbjct: 8  LFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYES 50


>UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001C3405D
          Length = 50

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 24 KAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          +A+++ L +IC T ++   + R  LCE+H R  +TE+A   AYE++
Sbjct: 4  RALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAK 49


>UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
           RepID=A4SUJ6_AERS4
          Length = 120

 Score = 43.1 bits (100), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 9   LTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
           L  + ++ K A    K  +V+L+++CITA+    + R  LCE+ +  G+TE+ +  AYE+
Sbjct: 59  LIAKPLQPKEASMFGKTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEA 118

Query: 69  E 69
           +
Sbjct: 119 K 119


>UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX
          Length = 53

 Score = 42.7 bits (99), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 20 MKQHK-AMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          MKQ K A+   L+++C T ++   +TR  LCEV ++ G  EV    AYES 
Sbjct: 1  MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYESN 51


>UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI
          Length = 49

 Score = 40.0 bits (92), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
          +H  ++V L++ICIT +   L+TR+ L E+  R G  EVA   A  S
Sbjct: 2  KHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTS 48


>UniRef50_C4TZJ3 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii
          ATCC 33638 RepID=C4TZJ3_YERKR
          Length = 49

 Score = 39.7 bits (91), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 32 VICITAVVAALVTRKDLCEVHIRTGQTEVAVF 63
          +ICITAV+   + R  LCEVHI+ G  E+A F
Sbjct: 10 MICITAVLIIWMIRHSLCEVHIKLGGAEIAAF 41


>UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=A7MPJ9_ENTS8
          Length = 56

 Score = 39.3 bits (90), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 18 RAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVA 61
          + MK    ++  L ++CIT ++ AL+ +  LCE+ IR+G  EVA
Sbjct: 5  KGMKPLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVA 48


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R...    94   1e-18
UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX              67   2e-10
UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI        67   3e-10
UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID...    64   1e-09
UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero...    62   6e-09

Sequences not found previously or not previously below threshold:

UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9...    57   3e-07
UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax...    50   2e-05
UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK...    48   8e-05
UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo...    45   5e-04
UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba...    45   0.001
UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob...    43   0.002
UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp...    43   0.002
UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX           43   0.003
UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr...    42   0.008
UniRef50_C4TZJ3 Putative uncharacterized protein n=1 Tax=Yersini...    40   0.019
UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba...    40   0.025
UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ...    40   0.027
UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=...    39   0.045

>UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26
          Length = 70

 Score = 93.9 bits (232), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 57/69 (82%)

Query: 1  MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEV 60
          MLNTCR+     K KEK+AMKQ KAM++ALIVIC+T +V ALVTRKDLCEV IRTGQTEV
Sbjct: 1  MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEV 60

Query: 61 AVFTAYESE 69
          AVF  YESE
Sbjct: 61 AVFVDYESE 69


>UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX
          Length = 52

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 30/46 (65%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
            +++  ++++C+T ++   +TRK LCE+  R G  EVA F AYES
Sbjct: 5  RSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYES 50


>UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI
          Length = 50

 Score = 66.5 bits (161), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 20 MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE
Sbjct: 1  MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50


>UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ
          Length = 52

 Score = 63.8 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
             +   +++ICIT ++   +TR  LCE+ ++ GQ E A F AYES
Sbjct: 5  RSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYES 50


>UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae
          RepID=D2TJU7_CITRO
          Length = 50

 Score = 61.9 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 29/45 (64%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
           K ++ +LIVIC+T ++   + R  LCE+HIR G  E+A F A E
Sbjct: 3  QKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACE 47


>UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX
          Length = 53

 Score = 56.5 bits (135), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 20 MKQHK-AMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
          MKQ K A+   L+++C T ++   +TR  LCEV ++ G  EV    AYES
Sbjct: 1  MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50


>UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001C3405D
          Length = 50

 Score = 50.0 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
           +A+++ L +IC T ++   + R  LCE+H R  +TE+A   AYE++
Sbjct: 3  KRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAK 49


>UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI
          Length = 49

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
          +H  ++V L++ICIT +   L+TR+ L E+  R G  EVA   A  S
Sbjct: 2  KHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTS 48


>UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342
          RepID=B5RJZ0_KLEP3
          Length = 55

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 26 MIVALIVICITAVVAALVTRKDLCEVHI 53
          ++  ++++C+T +    +TRK LCE+  
Sbjct: 8  LLWCVLIVCLTLLAFTYLTRKSLCEIRY 35


>UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=A7MPJ9_ENTS8
          Length = 56

 Score = 44.6 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 18 RAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAY 66
          + MK    ++  L ++CIT ++ AL+ +  LCE+ IR+G  EVA   A 
Sbjct: 5  KGMKPLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLAC 53


>UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=C9Y1C5_CROTZ
          Length = 50

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 20 MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAY 66
          MK  K +    +V C+T ++ AL+    LCE+ I+ G  EVA   + 
Sbjct: 1  MKPLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSC 47


>UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
           RepID=A4SUJ6_AERS4
          Length = 120

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%)

Query: 15  KEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
           + K A    K  +V+L+++CITA+    + R  LCE+ +  G+TE+ +  AYE++
Sbjct: 65  QPKEASMFGKTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAK 119


>UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX
          Length = 50

 Score = 43.0 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
           +  ++ LIVIC+T +    + R  LC + ++ G T +    AYE
Sbjct: 3  QRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYE 47


>UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria
          RepID=A7MEL1_ENTS8
          Length = 52

 Score = 41.5 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          +    I  +I++C+T ++   ++R+ LCE+ +R    E+    A +
Sbjct: 4  KDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACK 49


>UniRef50_C4TZJ3 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii
          ATCC 33638 RepID=C4TZJ3_YERKR
          Length = 49

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 32 VICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          +ICITAV+   + R  LCEVHI+ G  E+A F   + +
Sbjct: 10 MICITAVLIIWMIRHSLCEVHIKLGGAEIAAFLQCKQQ 47


>UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223
          RepID=B8EG05_SHEB2
          Length = 68

 Score = 40.0 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 17 KRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          ++ M + K   ++L ++C T + A  + R DLC+V  R G   + V  AYE
Sbjct: 15 RQDMPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVVLAYE 65


>UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D675_VIBVU
          Length = 65

 Score = 40.0 bits (92), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 17 KRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          +R +   K  + AL+V+CITAV+   +    LC++  +  Q ++++  AYE
Sbjct: 13 RRQVMPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYE 63


>UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57
          Length = 50

 Score = 39.2 bits (90), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 24 KAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          K  +VA+IV+C+T +   L+    LCE  ++    E     AYE
Sbjct: 4  KYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYE 47


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R...    89   4e-17
UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX              69   5e-11
UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI        64   1e-09
UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9...    63   2e-09
UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID...    63   2e-09
UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba...    63   4e-09
UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero...    61   1e-08
UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax...    59   5e-08
UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK...    58   1e-07
UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo...    48   8e-05

Sequences not found previously or not previously below threshold:

UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob...    52   4e-06
UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX           45   6e-04
UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr...    45   9e-04
UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp...    44   0.001
UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ...    43   0.003
UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba...    41   0.011
UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=...    41   0.013
UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Esc...    40   0.019
UniRef50_C4TZJ3 Putative uncharacterized protein n=1 Tax=Yersini...    40   0.023
UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S...    39   0.054
UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24       38   0.097

>UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26
          Length = 70

 Score = 89.3 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 57/69 (82%)

Query: 1  MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEV 60
          MLNTCR+     K KEK+AMKQ KAM++ALIVIC+T +V ALVTRKDLCEV IRTGQTEV
Sbjct: 1  MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEV 60

Query: 61 AVFTAYESE 69
          AVF  YESE
Sbjct: 61 AVFVDYESE 69


>UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX
          Length = 52

 Score = 68.8 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 30/47 (63%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
             +++  ++++C+T ++   +TRK LCE+  R G  EVA F AYES
Sbjct: 4  PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYES 50


>UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI
          Length = 50

 Score = 63.8 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 20 MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE
Sbjct: 1  MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50


>UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX
          Length = 53

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 21 KQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
          +   A+   L+++C T ++   +TR  LCEV ++ G  EV    AYES
Sbjct: 3  QPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50


>UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ
          Length = 52

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 23 HKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 68
             +   +++ICIT ++   +TR  LCE+ ++ GQ E A F AYES
Sbjct: 5  RSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYES 50


>UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter
          RepID=A7MPJ9_ENTS8
          Length = 56

 Score = 62.7 bits (151), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 18 RAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          + MK    ++  L ++CIT ++ AL+ +  LCE+ IR+G  EVA   A   +
Sbjct: 5  KGMKPLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56


>UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae
          RepID=D2TJU7_CITRO
          Length = 50

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
            K ++ +LIVIC+T ++   + R  LCE+HIR G  E+A F A E +
Sbjct: 2  PQKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVK 49


>UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter
          cancerogenus ATCC 35316 RepID=UPI0001C3405D
          Length = 50

 Score = 58.8 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
            +A+++ L +IC T ++   + R  LCE+H R  +TE+A   AYE++
Sbjct: 2  PKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAK 49


>UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI
          Length = 49

 Score = 57.7 bits (138), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          +H  ++V L++ICIT +   L+TR+ L E+  R G  EVA   A  S 
Sbjct: 2  KHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTSR 49


>UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=C9Y1C5_CROTZ
          Length = 50

 Score = 52.3 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 20 MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          MK  K +    +V C+T ++ AL+    LCE+ I+ G  EVA   +    
Sbjct: 1  MKPLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSCSDR 50


>UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342
          RepID=B5RJZ0_KLEP3
          Length = 55

 Score = 48.0 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 18/32 (56%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHI 53
              ++  ++++C+T +    +TRK LCE+  
Sbjct: 4  PPSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35


>UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX
          Length = 50

 Score = 45.3 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
            +  ++ LIVIC+T +    + R  LC + ++ G T +    AYE +
Sbjct: 2  PQRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVK 49


>UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria
          RepID=A7MEL1_ENTS8
          Length = 52

 Score = 44.6 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 22 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          +    I  +I++C+T ++   ++R+ LCE+ +R    E+    A +
Sbjct: 4  KDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACK 49


>UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449
           RepID=A4SUJ6_AERS4
          Length = 120

 Score = 44.2 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 31/46 (67%)

Query: 24  KAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
           K  +V+L+++CITA+    + R  LCE+ +  G+TE+ +  AYE++
Sbjct: 74  KTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAK 119


>UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D675_VIBVU
          Length = 65

 Score = 42.7 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 17 KRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          +R +   K  + AL+V+CITAV+   +    LC++  +  Q ++++  AYE
Sbjct: 13 RRQVMPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYE 63


>UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223
          RepID=B8EG05_SHEB2
          Length = 68

 Score = 41.1 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 17 KRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYE 67
          ++ M + K   ++L ++C T + A  + R DLC+V  R G   + V  AYE
Sbjct: 15 RQDMPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVVLAYE 65


>UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57
          Length = 50

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 24 KAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          K  +VA+IV+C+T +   L+    LCE  ++    E     AYE +
Sbjct: 4  KYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPK 49


>UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Escherichia coli UTI89
           RepID=Q1RBZ5_ECOUT
          Length = 163

 Score = 40.3 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 36  TAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
           T +    +TR+ L E+  R G  EVA   A  S 
Sbjct: 131 TILTFT-LTRQSLYELRFRDGDKEVAALMACTSR 163


>UniRef50_C4TZJ3 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii
          ATCC 33638 RepID=C4TZJ3_YERKR
          Length = 49

 Score = 40.0 bits (92), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 24/38 (63%)

Query: 32 VICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          +ICITAV+   + R  LCEVHI+ G  E+A F   + +
Sbjct: 10 MICITAVLIIWMIRHSLCEVHIKLGGAEIAAFLQCKQQ 47


>UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI
          Length = 68

 Score = 38.8 bits (89), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 24 KAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          K  ++ L+ +C T +  +L+ R+ LCE++I  G T V V  AYE+ 
Sbjct: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR 67


>UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24
          Length = 65

 Score = 38.0 bits (87), Expect = 0.097,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 30 LIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69
          +  +C T +  +L+ R+ LCE++I  G T V V  AYE+ 
Sbjct: 1  MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR 40


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.320    0.143    0.393 

Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,612,125
Number of Sequences: 3077464
Number of extensions: 9702803
Number of successful extensions: 37988
Number of sequences better than 1.0e-01: 23
Number of HSP's better than  0.1 without gapping: 55
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37933
Number of HSP's gapped (non-prelim): 58
length of query: 69
length of database: 1,040,396,356
effective HSP length: 41
effective length of query: 28
effective length of database: 914,220,332
effective search space: 25598169296
effective search space used: 25598169296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 87 (38.0 bits)