Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	L	I	V	P	Q	W	P	Q	P	K	G	V	A	A	C	S	S	T	R	I	G	G	V	S	L	P	P	Y	D	S	L	N	L	G	A	H	C	G	D	N	P	D	H	V	E	E	N	R	K	R	L	F	A	A	G	N	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	S	K	P	V	W	L	E	Q	V	H	G	K	D	V	L	K	L	T	G	E	P	Y	A	S	K	R	A	D	A	S	Y	S	N	T	P	G	T	V	C	A	V	M	T	A	D	C	L	P	V	L	F	C	N	R	A	G	T	E	V
Secondary structure
SS confidence
Disorder																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	A	A	H	A	G	W	R	G	L	C	A	G	V	L	E	E	T	V	S	C	F	A	D	N	P	E	N	I	L	A	W	L	G	P	A	I	G	P	R	A	F	E	V	G	G	E	V	R	E	A	F	M	A	V	D	A	K	A	S
Secondary structure
SS confidence
Disorder																																										?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	A	F	I	Q	H	G	D	K	Y	L	A	D	I	Y	Q	L	A	R	Q	R	L	A	N	V	G	V	E	Q	I	F	G	G	D	R	C	T	Y	T	E	N	E	T	F	F	S	Y	R	R	D	K	T	T	G	R	M	A	S	F	I
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.
Sequence		W	L	I
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1rw0 chain A Region: 1 - 243 Aligned: 243 Modelled: 243 Confidence: 100.0% Identity: 87% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: YfiH-like Phyre2 PDB 1xaf chain A Region: 2 - 243 Aligned: 242 Modelled: 242 Confidence: 100.0% Identity: 97% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: YfiH-like Phyre2 PDB 1rv9 chain A Region: 4 - 242 Aligned: 237 Modelled: 239 Confidence: 100.0% Identity: 50% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: YfiH-like Phyre2 PDB 1t8h chain A Region: 1 - 242 Aligned: 242 Modelled: 242 Confidence: 100.0% Identity: 36% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: YfiH-like Phyre2 PDB 1xfj chain A Region: 1 - 242 Aligned: 242 Modelled: 242 Confidence: 100.0% Identity: 38% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: YfiH-like Phyre2 PDB 2f9z chain C domain 1 Region: 88 - 153 Aligned: 66 Modelled: 66 Confidence: 93.2% Identity: 17% Fold: CNF1/YfiH-like putative cysteine hydrolases Superfamily: CNF1/YfiH-like putative cysteine hydrolases Family: CheD-like Phyre2 PDB 1np7 chain A domain 2 Region: 108 - 216 Aligned: 98 Modelled: 100 Confidence: 49.0% Identity: 12% Fold: Cryptochrome/photolyase, N-terminal domain Superfamily: Cryptochrome/photolyase, N-terminal domain Family: Cryptochrome/photolyase, N-terminal domain Phyre2 PDB 3sds chain A Region: 24 - 95 Aligned: 70 Modelled: 72 Confidence: 46.9% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial; PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis Phyre2 PDB 3giw chain A Region: 158 - 214 Aligned: 53 Modelled: 57 Confidence: 38.1% Identity: 9% PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function duf574; PDBTitle: crystal structure of a duf574 family protein (sav_2177) from2 streptomyces avermitilis ma-4680 at 1.45 a resolution Phyre2 PDB 3grf chain A Region: 28 - 95 Aligned: 67 Modelled: 68 Confidence: 35.2% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: x-ray structure of ornithine transcarbamoylase from giardia2 lamblia Phyre2 PDB 3g7k chain D Region: 23 - 93 Aligned: 59 Modelled: 71 Confidence: 33.4% Identity: 25% PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase Phyre2 PDB 2qe6 chain B Region: 158 - 214 Aligned: 52 Modelled: 57 Confidence: 28.1% Identity: 13% PDB header:transferase Chain: B: PDB Molecule:uncharacterized protein tfu_2867; PDBTitle: crystal structure of a putative methyltransferase (tfu_2867) from2 thermobifida fusca yx at 1.95 a resolution Phyre2 PDB 1kjk chain A Region: 218 - 239 Aligned: 21 Modelled: 22 Confidence: 26.8% Identity: 33% PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: solution structure of the lambda integrase amino-terminal2 domain Phyre2 PDB 1z1b chain A domain 1 Region: 218 - 239 Aligned: 21 Modelled: 22 Confidence: 24.4% Identity: 33% Fold: DNA-binding domain Superfamily: DNA-binding domain Family: lambda integrase N-terminal domain Phyre2 PDB 1owl chain A domain 2 Region: 108 - 216 Aligned: 97 Modelled: 109 Confidence: 23.8% Identity: 12% Fold: Cryptochrome/photolyase, N-terminal domain Superfamily: Cryptochrome/photolyase, N-terminal domain Family: Cryptochrome/photolyase, N-terminal domain Phyre2 PDB 1ecj chain B Region: 128 - 224 Aligned: 93 Modelled: 97 Confidence: 22.4% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer Phyre2 PDB 2otc chain A Region: 29 - 95 Aligned: 66 Modelled: 66 Confidence: 21.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine transcarbamoylase complexed with n-2 (phosphonacetyl)-l-ornithine Phyre2 PDB 1duv chain G domain 2 Region: 40 - 95 Aligned: 56 Modelled: 56 Confidence: 20.3% Identity: 18% Fold: ATC-like Superfamily: Aspartate/ornithine carbamoyltransferase Family: Aspartate/ornithine carbamoyltransferase Phyre2 PDB 3bd0 chain D Region: 114 - 156 Aligned: 42 Modelled: 43 Confidence: 19.4% Identity: 21% PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Phyre2 PDB 2jbl chain C Region: 216 - 242 Aligned: 27 Modelled: 27 Confidence: 17.3% Identity: 26% PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis Phyre2 1 d1rw0a_ 2 d1xafa_ 3 d1rv9a_ 4 d1t8ha_ 5 d1xfja_ 6 d2f9zc1 7 d1np7a2 8 c3sdsA_ 9 c3giwA_ 10 c3grfA_ 11 c3g7kD_ 12 c2qe6B_ 13 c1kjkA_ 14 d1z1ba1 15 d1owla2 16 c1ecjB_ 17 c2otcA_ 18 d1duvg2 19 c3bd0D_ 20 c2jblC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1rw0a_ 100.0 87 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 2 d1xafa_ 100.0 97 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 3 d1rv9a_ 100.0 50 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 4 d1t8ha_ 100.0 36 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 5 d1xfja_ 100.0 38 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:YfiH-like 6 d2f9zc1 93.2 17 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 7 d1np7a2 49.0 12 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 8 c3sdsA_ 46.9 19 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial; PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis 9 c3giwA_ 38.1 9 PDB header:unknown function Chain: A: PDB Molecule:protein of unknown function duf574; PDBTitle: crystal structure of a duf574 family protein (sav_2177) from2 streptomyces avermitilis ma-4680 at 1.45 a resolution 10 c3grfA_ 35.2 21 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: x-ray structure of ornithine transcarbamoylase from giardia2 lamblia 11 c3g7kD_ 33.4 25 PDB header:isomerase Chain: D: PDB Molecule:3-methylitaconate isomerase; PDBTitle: crystal structure of methylitaconate-delta-isomerase 12 c2qe6B_ 28.1 13 PDB header:transferase Chain: B: PDB Molecule:uncharacterized protein tfu_2867; PDBTitle: crystal structure of a putative methyltransferase (tfu_2867) from2 thermobifida fusca yx at 1.95 a resolution 13 c1kjkA_ 26.8 33 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: solution structure of the lambda integrase amino-terminal2 domain 14 d1z1ba1 24.4 33 Fold:DNA-binding domain Superfamily:DNA-binding domain Family:lambda integrase N-terminal domain 15 d1owla2 23.8 12 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 16 c1ecjB_ 22.4 11 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 17 c2otcA_ 21.0 20 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine transcarbamoylase complexed with n-2 (phosphonacetyl)-l-ornithine 18 d1duvg2 20.3 18 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 19 c3bd0D_ 19.4 21 PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii 20 c2jblC_ 17.3 26 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center cytochrome c PDBTitle: photosynthetic reaction center from blastochloris viridis 21 d2i5nc1 not modelled 17.3 26 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 22 d2bo9b1 not modelled 16.1 14 Fold:Cystatin-like Superfamily:Cystatin/monellin Family:Latexin-like 23 c2w37A_ not modelled 16.1 18 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic; PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii 24 d1otfa_ not modelled 15.3 15 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 25 c1zrtD_ not modelled 14.4 19 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 26 c2fynH_ not modelled 14.3 19 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 27 c1a1sA_ not modelled 13.6 17 PDB header:transcarbamylase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine carbamoyltransferase from pyrococcus furiosus 28 d2nvma1 not modelled 13.6 21 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 29 d1dxha2 not modelled 13.4 14 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 30 c2pw0A_ not modelled 12.9 21 PDB header:unknown function Chain: A: PDB Molecule:prpf methylaconitate isomerase; PDBTitle: crystal structure of trans-aconitate bound to methylaconitate2 isomerase prpf from shewanella oneidensis 31 c3lyvF_ not modelled 12.4 63 PDB header:chaperone Chain: F: PDB Molecule:ribosome-associated factor y; PDBTitle: crystal structure of a domain of ribosome-associated factor y from2 streptococcus pyogenes serotype m6. northeast structural genomics3 consortium target id dr64a 32 d1vlva2 not modelled 12.1 18 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 33 d2nlva1 not modelled 11.9 21 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 34 c2qlcC_ not modelled 11.8 15 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein radc homolog; PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls 35 d1xbta2 not modelled 11.5 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 36 d2b8ta2 not modelled 11.3 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 37 d2h9fa1 not modelled 11.1 24 Fold:Diaminopimelate epimerase-like Superfamily:Diaminopimelate epimerase-like Family:PA0793-like 38 c1eysC_ not modelled 10.5 22 PDB header:electron transport Chain: C: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 39 d1eysc_ not modelled 10.5 22 Fold:Multiheme cytochromes Superfamily:Multiheme cytochromes Family:Photosynthetic reaction centre (cytochrome subunit) 40 c2hfqA_ not modelled 10.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5 41 d2hfqa1 not modelled 10.1 21 Fold:NE1680-like Superfamily:NE1680-like Family:NE1680-like 42 c1p84D_ not modelled 9.8 13 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 43 d1wjpa2 not modelled 9.8 45 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 44 d1xkia_ not modelled 9.8 16 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 45 d1otha2 not modelled 9.6 13 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 46 c3d7qB_ not modelled 9.5 11 PDB header:unknown function Chain: B: PDB Molecule:xisi protein-like; PDBTitle: crystal structure of a xisi-like protein (npun_ar114) from nostoc2 punctiforme pcc 73102 at 2.30 a resolution 47 d1bjpa_ not modelled 9.5 12 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 48 c2f9iC_ not modelled 9.1 13 PDB header:transferase Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus 49 d2hrva_ not modelled 9.1 28 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral cysteine protease of trypsin fold 50 c3by0B_ not modelled 8.8 18 PDB header:ligand binding protein Chain: B: PDB Molecule:neutrophil gelatinase-associated lipocalin; PDBTitle: crystal structure of siderocalin (ngal, lipocalin 2) w79a-r81a2 complexed with ferric enterobactin 51 c1z8rA_ not modelled 8.6 20 PDB header:hydrolase Chain: A: PDB Molecule:coxsackievirus b4 polyprotein; PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51) 52 d2ch5a2 not modelled 8.6 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 53 c3rlhA_ not modelled 8.5 25 PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom 54 c3updA_ not modelled 8.5 15 PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus 55 c3ot4F_ not modelled 8.4 23 PDB header:hydrolase Chain: F: PDB Molecule:putative isochorismatase; PDBTitle: structure and catalytic mechanism of bordetella bronchiseptica nicf 56 c3tvsA_ not modelled 8.3 10 PDB header:signaling protein Chain: A: PDB Molecule:cryptochrome-1; PDBTitle: structure of full-length drosophila cryptochrome 57 d1b0aa2 not modelled 8.1 16 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 58 d2nwva1 not modelled 8.0 13 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 59 c3gbcA_ not modelled 7.9 18 PDB header:hydrolase Chain: A: PDB Molecule:pyrazinamidase/nicotinamidas pnca; PDBTitle: determination of the crystal structure of the pyrazinamidase from2 m.tuberculosis : a structure-function analysis for prediction3 resistance to pyrazinamide 60 c2op8A_ not modelled 7.9 23 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 61 c3m20A_ not modelled 7.6 8 PDB header:isomerase Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative; PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution 62 d1ppjd1 not modelled 7.6 19 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 63 d3cx5d1 not modelled 7.6 13 Fold:Cytochrome c Superfamily:Cytochrome c Family:Cytochrome bc1 domain 64 c3ecyA_ not modelled 7.5 8 PDB header:hydrolase Chain: A: PDB Molecule:cg4584-pa, isoform a (bcdna.ld08534); PDBTitle: crystal structural analysis of drosophila melanogaster dutpase 65 c1gph1_ not modelled 7.3 11 PDB header:transferase(glutamine amidotransferase) Chain: 1: PDB Molecule:glutamine phosphoribosyl-pyrophosphate amidotransferase; PDBTitle: structure of the allosteric regulatory enzyme of purine biosynthesis 66 d1ml4a2 not modelled 7.0 16 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 67 d1mwwa_ not modelled 6.7 8 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:Hypothetical protein HI1388.1 68 c3ry0A_ not modelled 6.6 8 PDB header:isomerase Chain: A: PDB Molecule:putative tautomerase; PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway 69 c3cwbQ_ not modelled 6.5 13 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 70 d2f9ya1 not modelled 6.4 11 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 71 c2rgwD_ not modelled 6.3 14 PDB header:transferase Chain: D: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase 72 c2l5pA_ not modelled 6.2 11 PDB header:transport protein Chain: A: PDB Molecule:lipocalin 12; PDBTitle: solution nmr structure of protein lipocalin 12 from rat epididymis 73 c3gd5D_ not modelled 6.2 22 PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus 74 c3uzuA_ not modelled 6.2 19 PDB header:transferase Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a; PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei 75 c2f9rC_ not modelled 6.1 25 PDB header:hydrolase Chain: C: PDB Molecule:sphingomyelinase d 1; PDBTitle: crystal structure of the inactive state of the smase i, a2 sphingomyelinase d from loxosceles laeta venom 76 c2ormA_ not modelled 6.0 23 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase hp0924; PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori. 77 c2z8nB_ not modelled 5.9 24 PDB header:lyase Chain: B: PDB Molecule:27.5 kda virulence protein; PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase 78 c2bo9B_ not modelled 5.9 13 PDB header:hydrolase Chain: B: PDB Molecule:human latexin; PDBTitle: human carboxypeptidase a4 in complex with human latexin. 79 c3mb2G_ not modelled 5.9 8 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 80 c2x4kB_ not modelled 5.8 15 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 81 c2orvB_ not modelled 5.8 16 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: human thymidine kinase 1 in complex with tp4a 82 d1x71a1 not modelled 5.7 18 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 83 c3nglA_ not modelled 5.7 16 PDB header:oxidoreductase, hydrolase Chain: A: PDB Molecule:bifunctional protein fold; PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum 84 c1hynQ_ not modelled 5.7 15 PDB header:membrane protein Chain: Q: PDB Molecule:band 3 anion transport protein; PDBTitle: crystal structure of the cytoplasmic domain of human2 erythrocyte band-3 protein 85 c1jmxA_ not modelled 5.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:amine dehydrogenase; PDBTitle: crystal structure of a quinohemoprotein amine dehydrogenase2 from pseudomonas putida 86 c3hcyB_ not modelled 5.7 29 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein; PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021 87 d1gph11 not modelled 5.7 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 88 c3uinD_ not modelled 5.6 50 PDB header:ligase/isomerase/protein binding Chain: D: PDB Molecule:e3 sumo-protein ligase ranbp2; PDBTitle: complex between human rangap1-sumo2, ubc9 and the ir1 domain from2 ranbp2 89 c3abfB_ not modelled 5.5 19 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 90 d1pvva2 not modelled 5.4 20 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 91 c3bmaC_ not modelled 5.4 57 PDB header:ligase Chain: C: PDB Molecule:d-alanyl-lipoteichoic acid synthetase; PDBTitle: crystal structure of d-alanyl-lipoteichoic acid synthetase from2 streptococcus pneumoniae r6 92 d1yupa1 not modelled 5.3 9 Fold:Lipocalins Superfamily:Lipocalins Family:Retinol binding protein-like 93 c2h0rD_ not modelled 5.3 5 PDB header:hydrolase Chain: D: PDB Molecule:nicotinamidase; PDBTitle: structure of the yeast nicotinamidase pnc1p 94 c2kswA_ not modelled 5.2 33 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:oryctin; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for oryctin 95 c3on9B_ not modelled 5.2 22 PDB header:viral protein Chain: B: PDB Molecule:tumour necrosis factor receptor; PDBTitle: the secret domain from ectromelia virus 96 c3e2iA_ not modelled 5.1 11 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus 97 d1ecfa1 not modelled 5.1 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 98 d1hynp_ not modelled 5.0 15 Fold:Phoshotransferase/anion transport protein Superfamily:Phoshotransferase/anion transport protein Family:Anion transport protein, cytoplasmic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0