BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (119 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5Y349 Fumarate reductase subunit D n=164 Tax=Bacteria ... 214 7e-55 UniRef50_B1JMQ5 Fumarate reductase D subunit n=13 Tax=Enterobact... 206 2e-52 UniRef50_C3LS88 Fumarate reductase subunit D n=57 Tax=Gammaprote... 131 7e-30 UniRef50_A4Y2A0 Fumarate reductase subunit D n=13 Tax=Gammaprote... 117 1e-25 UniRef50_A4SK02 Fumarate reductase, 13 kDa hydrophobic protein n... 107 9e-23 UniRef50_C7RPL7 Fumarate reductase D subunit n=1 Tax=Candidatus ... 103 2e-21 UniRef50_A1SZQ3 Fumarate reductase, D subunit n=4 Tax=Gammaprote... 102 3e-21 UniRef50_C6AP99 Fumarate reductase subunit D n=4 Tax=Pasteurella... 98 7e-20 UniRef50_C5RYX1 Fumarate reductase subunit D n=2 Tax=Actinobacil... 96 5e-19 UniRef50_A3N2H4 Fumarate reductase subunit D n=28 Tax=Pasteurell... 94 2e-18 UniRef50_B8EKC9 Fumarate reductase D subunit n=3 Tax=Proteobacte... 80 3e-14 UniRef50_A4NX44 Monofunctional biosynthetic peptidoglycan transg... 57 1e-07 UniRef50_A5EXV9 Fumarate reductase, subunit D n=1 Tax=Dichelobac... 53 4e-06 UniRef50_C8N8D4 Putative uncharacterized protein n=1 Tax=Cardiob... 52 8e-06 >UniRef50_B5Y349 Fumarate reductase subunit D n=164 Tax=Bacteria RepID=FRDD_KLEP3 Length = 119 Score = 214 bits (545), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 104/119 (87%), Positives = 112/119 (94%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 MINPNPKRSDEPVFWGLFGAGGMW AI+APVM+LLVGILLPLGL P DA SYERVLAFAQ Sbjct: 1 MINPNPKRSDEPVFWGLFGAGGMWGAIVAPVMVLLVGILLPLGLAPADAFSYERVLAFAQ 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 SFIGR F+FLMIVLPLWCGLHR+HHAMHDLKIHVP GKWVFYGLAAIL+V+TL+GV+ I Sbjct: 61 SFIGRAFIFLMIVLPLWCGLHRIHHAMHDLKIHVPNGKWVFYGLAAILSVITLVGVLFI 119 >UniRef50_B1JMQ5 Fumarate reductase D subunit n=13 Tax=Enterobacteriaceae RepID=B1JMQ5_YERPY Length = 118 Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 100/118 (84%), Positives = 109/118 (92%) Query: 2 INPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQS 61 +N PKRSDEP+FWGLFGAGGMW AIIAPV+ILLV ILLPLG FPGDALSYER+LAF QS Sbjct: 1 MNQVPKRSDEPIFWGLFGAGGMWGAIIAPVIILLVAILLPLGAFPGDALSYERILAFCQS 60 Query: 62 FIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 FI RVFL LMI+LPLWCGLHR+HHAMHDLKIHVPAGKWVFYGLAAIL+VVT IGV+T+ Sbjct: 61 FISRVFLLLMIILPLWCGLHRIHHAMHDLKIHVPAGKWVFYGLAAILSVVTFIGVLTL 118 >UniRef50_C3LS88 Fumarate reductase subunit D n=57 Tax=Gammaproteobacteria RepID=FRDD_VIBCM Length = 130 Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 62/115 (53%), Positives = 83/115 (72%), Gaps = 1/115 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 +IN NPKRSDEPV+W LFGAGG W A+I P+ +L++GIL PLG+ +ALSYERV +FA Sbjct: 11 VINTNPKRSDEPVWWSLFGAGGTWFAMITPITVLVLGILAPLGVIDAEALSYERVSSFAT 70 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP-AGKWVFYGLAAILTVVTLI 114 S IG +F+ + LP+W +HR+HH MHDLK H AGK YG A I++ + ++ Sbjct: 71 SIIGALFIIGTLALPMWHAMHRVHHGMHDLKFHTGVAGKIACYGFATIISALAVV 125 >UniRef50_A4Y2A0 Fumarate reductase subunit D n=13 Tax=Gammaproteobacteria RepID=FRDD_SHEPC Length = 121 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 1/120 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 MIN +PKRSDEP++WGLFGAGG+W A+I PV +LL+GILLPL F + Y++V AF Sbjct: 1 MINYSPKRSDEPIWWGLFGAGGVWFAMITPVTVLLMGILLPLHGFGVVDIGYDKVYAFVS 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHV-PAGKWVFYGLAAILTVVTLIGVVTI 119 IG F L + LP+W +HR+HH +HDL+IH+ GK+ Y AA++TV+ + V+ + Sbjct: 61 HPIGGAFTVLSLSLPMWHAMHRVHHGLHDLQIHLGTVGKYACYLAAALVTVLATVWVIQL 120 >UniRef50_A4SK02 Fumarate reductase, 13 kDa hydrophobic protein n=2 Tax=Aeromonas RepID=A4SK02_AERS4 Length = 123 Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 49/108 (45%), Positives = 79/108 (73%), Gaps = 1/108 (0%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRV 66 +RSDEP++WGLFGAGGM A++ PV++L+ G+L+P+G+ + +S++R AFA S+ G Sbjct: 7 RRSDEPIYWGLFGAGGMVVAMLLPVIVLITGLLVPMGIMDVETMSFDRAHAFASSWWGAC 66 Query: 67 FLFLMIVLPLWCGLHRMHHAMHDLKIHVPA-GKWVFYGLAAILTVVTL 113 L ++I LP+W G+HR++H +HDL IH +VFYG A +++ +T+ Sbjct: 67 ILLVIIALPIWHGMHRIYHGLHDLGIHTTKLHHYVFYGFAFLVSAITV 114 >UniRef50_C7RPL7 Fumarate reductase D subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPL7_9PROT Length = 123 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 79/115 (68%), Gaps = 2/115 (1%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFAQSFIGR 65 KRS+ P+FW LFGAGGM SA++ P+++ + GI +PLG+ P D +SY +LAFA++FIG+ Sbjct: 7 KRSNAPIFWALFGAGGMLSALLGPMLVFITGIAVPLGVVLPPDTMSYPHMLAFAKNFIGK 66 Query: 66 VFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAG-KWVFYGLAAILTVVTLIGVVTI 119 F+F +I L LW HR+ H++HD+ IH G K + YG A + T++ ++ I Sbjct: 67 GFIFAIIALFLWHAAHRIFHSLHDIGIHAGTGAKLLCYGTAMVGTLIAAYALLAI 121 >UniRef50_A1SZQ3 Fumarate reductase, D subunit n=4 Tax=Gammaproteobacteria RepID=A1SZQ3_PSYIN Length = 125 Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 50/95 (52%), Positives = 65/95 (68%), Gaps = 3/95 (3%) Query: 1 MINPNPK---RSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLA 57 M N K RS EP+FWGLFGAGGM +A + PVMIL+ GIL+PLGL LSYE+V Sbjct: 1 MSNTTEKIYTRSHEPIFWGLFGAGGMLTAFLTPVMILITGILIPLGLIDSKNLSYEKVHH 60 Query: 58 FAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKI 92 FA S+ G + +++ LPLW LHR++H +HD+ I Sbjct: 61 FATSWYGAAIVLVLVALPLWHTLHRIYHGLHDIGI 95 >UniRef50_C6AP99 Fumarate reductase subunit D n=4 Tax=Pasteurellaceae RepID=C6AP99_AGGAN Length = 114 Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M+N NPKRS+EP W +F AGGM S + V IL+ L P +S + ++AFA Sbjct: 1 MVNQNPKRSNEPPVWLMFSAGGMISG-----LAFPVLILILGLLLPFGLVSPDNIIAFAH 55 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 ++G++ + + + P+W GLHR+HH MHD+K+HVPAG ++FYGLA + +++ L V I Sbjct: 56 HWVGKLVILALTIFPMWAGLHRVHHGMHDVKVHVPAGGFIFYGLATLYSIIVLFAVCNI 114 >UniRef50_C5RYX1 Fumarate reductase subunit D n=2 Tax=Actinobacillus minor RepID=C5RYX1_9PAST Length = 118 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 49/106 (46%), Positives = 77/106 (72%), Gaps = 5/106 (4%) Query: 8 RSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVF 67 +S+EP W LF AGG SA PV+IL++G+LLP G+ + E +++FA +FIG++ Sbjct: 12 KSNEPPVWLLFSAGGSVSAFFFPVVILVLGVLLPFGI-----VDVETIISFAHTFIGKLA 66 Query: 68 LFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTL 113 + ++ + P+W G+HR+HH +HDLK+HVPAG ++FYGL+ + T+V L Sbjct: 67 ILVLTIFPMWAGMHRIHHGLHDLKVHVPAGGFIFYGLSTLYTLVVL 112 >UniRef50_A3N2H4 Fumarate reductase subunit D n=28 Tax=Pasteurellaceae RepID=FRDD_ACTP2 Length = 114 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/119 (41%), Positives = 74/119 (62%), Gaps = 5/119 (4%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M +PKRS+EP W +F AGG SAI V +L+ L P + E ++AFA Sbjct: 1 MNKQDPKRSNEPPVWLMFSAGGTISAIC-----FPVLLLILGVLLPLGLVPVENIVAFAH 55 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 ++ G++ + + + P+W G+HR+HH +HDLKIH PAG WVFYGL+A+ +V+ V+ + Sbjct: 56 TWFGKLVILAVTIFPMWAGMHRVHHGLHDLKIHFPAGGWVFYGLSALYSVIVFFAVIAL 114 >UniRef50_B8EKC9 Fumarate reductase D subunit n=3 Tax=Proteobacteria RepID=B8EKC9_METSB Length = 127 Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 6/120 (5%) Query: 1 MINPN----PKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERV 55 M PN P RS PVFW LFGAGGM SA+ P +I+L GI+ P G P D + Sbjct: 1 MTFPNAPHPPARSVAPVFWLLFGAGGMLSALFGPALIILTGIMAPHGWGVPADFADFPHA 60 Query: 56 LAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIH-VPAGKWVFYGLAAILTVVTLI 114 LAFA++ IG++ L +I L W G R+ + D+++ P + YG+AA++TV T + Sbjct: 61 LAFARNPIGKLVLLAVISLFFWHGAERLFLTLKDMRVAGAPVLRLATYGVAAVVTVATFV 120 >UniRef50_A4NX44 Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NX44_HAEIN Length = 61 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 28/52 (53%), Positives = 36/52 (69%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSY 52 M++ NPKRS EP W +FGAGG SAI PV+IL++G+LLP GL +Y Sbjct: 1 MVDQNPKRSGEPPVWLMFGAGGTVSAIFFPVVILIIGLLLPFGLVDAHNFNY 52 >UniRef50_A5EXV9 Fumarate reductase, subunit D n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXV9_DICNV Length = 116 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 12/115 (10%) Query: 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64 N K+ +P++WGLF GG +A+I +I V ILL G+ Y + FI Sbjct: 2 NQKQHLKPLYWGLFSVGGTVAALILAPLIASVCILLAFGILGSGEDFYHSI----HGFIT 57 Query: 65 RVFLFL----MIVLPLWCGLHRMHHAMHDLKIHVP----AGKWVFYGLAAILTVV 111 F+F M+ LW G HR ++ +HD+ I V G ++F A ++T++ Sbjct: 58 HKFVFFILAGMVFTMLWHGCHRFYYILHDMHIRVDNRMRVGAYLFSIAAFVITLL 112 >UniRef50_C8N8D4 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8D4_9GAMM Length = 138 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query: 3 NPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSF 62 + R +P++WGLF GG +A+ +I+++ I LP G A Y+ + F Sbjct: 22 HARHTRHFKPIYWGLFSVGGTIAALALAPIIIVLSIALPFGWLGSPAEFYQSI----HGF 77 Query: 63 IGRVFLFL----MIVLPLWCGLHRMHHAMHDLKIHV 94 + F++L +I +W G+HR ++ +HDL H+ Sbjct: 78 VANKFVYLVLAGVIFAMMWHGVHRFYYLLHDLHYHI 113 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5Y349 Fumarate reductase subunit D n=164 Tax=Bacteria ... 136 1e-31 UniRef50_B1JMQ5 Fumarate reductase D subunit n=13 Tax=Enterobact... 131 6e-30 UniRef50_C3LS88 Fumarate reductase subunit D n=57 Tax=Gammaprote... 119 3e-26 UniRef50_A4Y2A0 Fumarate reductase subunit D n=13 Tax=Gammaprote... 118 5e-26 UniRef50_C6AP99 Fumarate reductase subunit D n=4 Tax=Pasteurella... 108 5e-23 UniRef50_A4SK02 Fumarate reductase, 13 kDa hydrophobic protein n... 108 7e-23 UniRef50_A3N2H4 Fumarate reductase subunit D n=28 Tax=Pasteurell... 107 1e-22 UniRef50_A1SZQ3 Fumarate reductase, D subunit n=4 Tax=Gammaprote... 105 5e-22 UniRef50_C7RPL7 Fumarate reductase D subunit n=1 Tax=Candidatus ... 102 4e-21 UniRef50_C5RYX1 Fumarate reductase subunit D n=2 Tax=Actinobacil... 100 2e-20 UniRef50_B8EKC9 Fumarate reductase D subunit n=3 Tax=Proteobacte... 89 5e-17 UniRef50_C8N8D4 Putative uncharacterized protein n=1 Tax=Cardiob... 88 8e-17 UniRef50_A5EXV9 Fumarate reductase, subunit D n=1 Tax=Dichelobac... 84 1e-15 UniRef50_A4NX44 Monofunctional biosynthetic peptidoglycan transg... 63 3e-09 Sequences not found previously or not previously below threshold: UniRef50_A1KIY4 Fumarate reductase subunit D n=9 Tax=Mycobacteri... 48 1e-04 UniRef50_A1WX02 Succinate dehydrogenase subunit D n=1 Tax=Halorh... 38 0.067 >UniRef50_B5Y349 Fumarate reductase subunit D n=164 Tax=Bacteria RepID=FRDD_KLEP3 Length = 119 Score = 136 bits (344), Expect = 1e-31, Method: Composition-based stats. Identities = 104/119 (87%), Positives = 112/119 (94%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 MINPNPKRSDEPVFWGLFGAGGMW AI+APVM+LLVGILLPLGL P DA SYERVLAFAQ Sbjct: 1 MINPNPKRSDEPVFWGLFGAGGMWGAIVAPVMVLLVGILLPLGLAPADAFSYERVLAFAQ 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 SFIGR F+FLMIVLPLWCGLHR+HHAMHDLKIHVP GKWVFYGLAAIL+V+TL+GV+ I Sbjct: 61 SFIGRAFIFLMIVLPLWCGLHRIHHAMHDLKIHVPNGKWVFYGLAAILSVITLVGVLFI 119 >UniRef50_B1JMQ5 Fumarate reductase D subunit n=13 Tax=Enterobacteriaceae RepID=B1JMQ5_YERPY Length = 118 Score = 131 bits (330), Expect = 6e-30, Method: Composition-based stats. Identities = 100/118 (84%), Positives = 109/118 (92%) Query: 2 INPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQS 61 +N PKRSDEP+FWGLFGAGGMW AIIAPV+ILLV ILLPLG FPGDALSYER+LAF QS Sbjct: 1 MNQVPKRSDEPIFWGLFGAGGMWGAIIAPVIILLVAILLPLGAFPGDALSYERILAFCQS 60 Query: 62 FIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 FI RVFL LMI+LPLWCGLHR+HHAMHDLKIHVPAGKWVFYGLAAIL+VVT IGV+T+ Sbjct: 61 FISRVFLLLMIILPLWCGLHRIHHAMHDLKIHVPAGKWVFYGLAAILSVVTFIGVLTL 118 >UniRef50_C3LS88 Fumarate reductase subunit D n=57 Tax=Gammaproteobacteria RepID=FRDD_VIBCM Length = 130 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 63/120 (52%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 +IN NPKRSDEPV+W LFGAGG W A+I P+ +L++GIL PLG+ +ALSYERV +FA Sbjct: 11 VINTNPKRSDEPVWWSLFGAGGTWFAMITPITVLVLGILAPLGVIDAEALSYERVSSFAT 70 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP-AGKWVFYGLAAILTVVTLIGVVTI 119 S IG +F+ + LP+W +HR+HH MHDLK H AGK YG A I++ + ++ + I Sbjct: 71 SIIGALFIIGTLALPMWHAMHRVHHGMHDLKFHTGVAGKIACYGFATIISALAVVFIFMI 130 >UniRef50_A4Y2A0 Fumarate reductase subunit D n=13 Tax=Gammaproteobacteria RepID=FRDD_SHEPC Length = 121 Score = 118 bits (296), Expect = 5e-26, Method: Composition-based stats. Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 1/120 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 MIN +PKRSDEP++WGLFGAGG+W A+I PV +LL+GILLPL F + Y++V AF Sbjct: 1 MINYSPKRSDEPIWWGLFGAGGVWFAMITPVTVLLMGILLPLHGFGVVDIGYDKVYAFVS 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP-AGKWVFYGLAAILTVVTLIGVVTI 119 IG F L + LP+W +HR+HH +HDL+IH+ GK+ Y AA++TV+ + V+ + Sbjct: 61 HPIGGAFTVLSLSLPMWHAMHRVHHGLHDLQIHLGTVGKYACYLAAALVTVLATVWVIQL 120 >UniRef50_C6AP99 Fumarate reductase subunit D n=4 Tax=Pasteurellaceae RepID=C6AP99_AGGAN Length = 114 Score = 108 bits (270), Expect = 5e-23, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M+N NPKRS+EP W +F AGGM S + V IL+ L P +S + ++AFA Sbjct: 1 MVNQNPKRSNEPPVWLMFSAGGMISGL-----AFPVLILILGLLLPFGLVSPDNIIAFAH 55 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 ++G++ + + + P+W GLHR+HH MHD+K+HVPAG ++FYGLA + +++ L V I Sbjct: 56 HWVGKLVILALTIFPMWAGLHRVHHGMHDVKVHVPAGGFIFYGLATLYSIIVLFAVCNI 114 >UniRef50_A4SK02 Fumarate reductase, 13 kDa hydrophobic protein n=2 Tax=Aeromonas RepID=A4SK02_AERS4 Length = 123 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 49/108 (45%), Positives = 79/108 (73%), Gaps = 1/108 (0%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRV 66 +RSDEP++WGLFGAGGM A++ PV++L+ G+L+P+G+ + +S++R AFA S+ G Sbjct: 7 RRSDEPIYWGLFGAGGMVVAMLLPVIVLITGLLVPMGIMDVETMSFDRAHAFASSWWGAC 66 Query: 67 FLFLMIVLPLWCGLHRMHHAMHDLKIHVPA-GKWVFYGLAAILTVVTL 113 L ++I LP+W G+HR++H +HDL IH +VFYG A +++ +T+ Sbjct: 67 ILLVIIALPIWHGMHRIYHGLHDLGIHTTKLHHYVFYGFAFLVSAITV 114 >UniRef50_A3N2H4 Fumarate reductase subunit D n=28 Tax=Pasteurellaceae RepID=FRDD_ACTP2 Length = 114 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M +PKRS+EP W +F AGG SAI PV++L++ L P + E ++AFA Sbjct: 1 MNKQDPKRSNEPPVWLMFSAGGTISAICFPVLLLIL-----GVLLPLGLVPVENIVAFAH 55 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 ++ G++ + + + P+W G+HR+HH +HDLKIH PAG WVFYGL+A+ +V+ V+ + Sbjct: 56 TWFGKLVILAVTIFPMWAGMHRVHHGLHDLKIHFPAGGWVFYGLSALYSVIVFFAVIAL 114 >UniRef50_A1SZQ3 Fumarate reductase, D subunit n=4 Tax=Gammaproteobacteria RepID=A1SZQ3_PSYIN Length = 125 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 5/124 (4%) Query: 1 MINPNPK---RSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLA 57 M N K RS EP+FWGLFGAGGM +A + PVMIL+ GIL+PLGL LSYE+V Sbjct: 1 MSNTTEKIYTRSHEPIFWGLFGAGGMLTAFLTPVMILITGILIPLGLIDSKNLSYEKVHH 60 Query: 58 FAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIH--VPAGKWVFYGLAAILTVVTLIG 115 FA S+ G + +++ LPLW LHR++H +HD+ I + YG A ++V Sbjct: 61 FATSWYGAAIVLVLVALPLWHTLHRIYHGLHDIGIKRGRDLQQVFCYGFAFAVSVFVFTL 120 Query: 116 VVTI 119 ++ + Sbjct: 121 LLQM 124 >UniRef50_C7RPL7 Fumarate reductase D subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPL7_9PROT Length = 123 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 2/121 (1%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFA 59 M KRS+ P+FW LFGAGGM SA++ P+++ + GI +PLG+ P D +SY +LAFA Sbjct: 1 MKPTTLKRSNAPIFWALFGAGGMLSALLGPMLVFITGIAVPLGVVLPPDTMSYPHMLAFA 60 Query: 60 QSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAG-KWVFYGLAAILTVVTLIGVVT 118 ++FIG+ F+F +I L LW HR+ H++HD+ IH G K + YG A + T++ ++ Sbjct: 61 KNFIGKGFIFAIIALFLWHAAHRIFHSLHDIGIHAGTGAKLLCYGTAMVGTLIAAYALLA 120 Query: 119 I 119 I Sbjct: 121 I 121 >UniRef50_C5RYX1 Fumarate reductase subunit D n=2 Tax=Actinobacillus minor RepID=C5RYX1_9PAST Length = 118 Score = 99.6 bits (247), Expect = 2e-20, Method: Composition-based stats. Identities = 49/107 (45%), Positives = 76/107 (71%), Gaps = 5/107 (4%) Query: 8 RSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVF 67 +S+EP W LF AGG SA PV+IL++G+LLP G+ E +++FA +FIG++ Sbjct: 12 KSNEPPVWLLFSAGGSVSAFFFPVVILVLGVLLPFGIVD-----VETIISFAHTFIGKLA 66 Query: 68 LFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLI 114 + ++ + P+W G+HR+HH +HDLK+HVPAG ++FYGL+ + T+V L Sbjct: 67 ILVLTIFPMWAGMHRIHHGLHDLKVHVPAGGFIFYGLSTLYTLVVLY 113 >UniRef50_B8EKC9 Fumarate reductase D subunit n=3 Tax=Proteobacteria RepID=B8EKC9_METSB Length = 127 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 6 PKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFAQSFIG 64 P RS PVFW LFGAGGM SA+ P +I+L GI+ P G P D + LAFA++ IG Sbjct: 10 PARSVAPVFWLLFGAGGMLSALFGPALIILTGIMAPHGWGVPADFADFPHALAFARNPIG 69 Query: 65 RVFLFLMIVLPLWCGLHRMHHAMHDLKIH-VPAGKWVFYGLAAILTVVTLIGVVTI 119 ++ L +I L W G R+ + D+++ P + YG+AA++TV T + ++ I Sbjct: 70 KLVLLAVISLFFWHGAERLFLTLKDMRVAGAPVLRLATYGVAAVVTVATFVLLLLI 125 >UniRef50_C8N8D4 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8D4_9GAMM Length = 138 Score = 88.1 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 3 NPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSF 62 + R +P++WGLF GG +A+ +I+++ I LP G A Y+ + F + Sbjct: 22 HARHTRHFKPIYWGLFSVGGTIAALALAPIIIVLSIALPFGWLGSPAEFYQSIHGFVANK 81 Query: 63 IGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAG-KWVFYGLAAILTVVTLIG 115 + L +I +W G+HR ++ +HDL H+ + V Y + + +TL Sbjct: 82 FVYLVLAGVIFAMMWHGVHRFYYLLHDLHYHIGNRFRNVCYLVTIAIFALTLYA 135 >UniRef50_A5EXV9 Fumarate reductase, subunit D n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXV9_DICNV Length = 116 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%) Query: 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64 N K+ +P++WGLF GG +A+I +I V ILL G+ Y + F Sbjct: 2 NQKQHLKPLYWGLFSVGGTVAALILAPLIASVCILLAFGILGSGEDFYHSIHGFITHKFV 61 Query: 65 RVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP----AGKWVFYGLAAILTVV 111 L M+ LW G HR ++ +HD+ I V G ++F A ++T++ Sbjct: 62 FFILAGMVFTMLWHGCHRFYYILHDMHIRVDNRMRVGAYLFSIAAFVITLL 112 >UniRef50_A4NX44 Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NX44_HAEIN Length = 61 Score = 62.7 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 36/52 (69%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSY 52 M++ NPKRS EP W +FGAGG SAI PV+IL++G+LLP GL +Y Sbjct: 1 MVDQNPKRSGEPPVWLMFGAGGTVSAIFFPVVILIIGLLLPFGLVDAHNFNY 52 >UniRef50_A1KIY4 Fumarate reductase subunit D n=9 Tax=Mycobacterium tuberculosis complex RepID=FRDD_MYCBP Length = 125 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRV 66 +RS EP W LF AGGM +A++APV++LL G+ PLG + +LA ++ I ++ Sbjct: 12 RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL 69 Query: 67 FLFLMIVLPLWCGLHRMHHAMH---DLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 + +++VL L+ HR + L YG+A + + ++T+ Sbjct: 70 VVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGWMLLTM 125 >UniRef50_A1WX02 Succinate dehydrogenase subunit D n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX02_HALHL Length = 116 Score = 38.4 bits (88), Expect = 0.067, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFAQSFIGR 65 +RS EP W LFGAGG+ +A++ P +ILL GI++P+ + L Y+ + + Sbjct: 2 RRSHEPPLWLLFGAGGLLAALLGPALILLTGIVMPVAAEHGVELLGYQSMRELLARPVVG 61 Query: 66 VFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGK-WVFYG 103 + + L + + L HR++H + DL + G W YG Sbjct: 62 LAVALGLGVVLCHAAHRIYHTLRDLGVRAGRGTWWACYG 100 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5Y349 Fumarate reductase subunit D n=164 Tax=Bacteria ... 134 6e-31 UniRef50_B1JMQ5 Fumarate reductase D subunit n=13 Tax=Enterobact... 129 2e-29 UniRef50_C3LS88 Fumarate reductase subunit D n=57 Tax=Gammaprote... 124 1e-27 UniRef50_A4Y2A0 Fumarate reductase subunit D n=13 Tax=Gammaprote... 119 2e-26 UniRef50_A1SZQ3 Fumarate reductase, D subunit n=4 Tax=Gammaprote... 116 2e-25 UniRef50_A4SK02 Fumarate reductase, 13 kDa hydrophobic protein n... 111 8e-24 UniRef50_C6AP99 Fumarate reductase subunit D n=4 Tax=Pasteurella... 109 3e-23 UniRef50_A3N2H4 Fumarate reductase subunit D n=28 Tax=Pasteurell... 108 8e-23 UniRef50_C7RPL7 Fumarate reductase D subunit n=1 Tax=Candidatus ... 106 1e-22 UniRef50_C8N8D4 Putative uncharacterized protein n=1 Tax=Cardiob... 105 4e-22 UniRef50_C5RYX1 Fumarate reductase subunit D n=2 Tax=Actinobacil... 101 9e-21 UniRef50_A5EXV9 Fumarate reductase, subunit D n=1 Tax=Dichelobac... 93 3e-18 UniRef50_B8EKC9 Fumarate reductase D subunit n=3 Tax=Proteobacte... 93 3e-18 UniRef50_A1KIY4 Fumarate reductase subunit D n=9 Tax=Mycobacteri... 77 2e-13 UniRef50_A4NX44 Monofunctional biosynthetic peptidoglycan transg... 65 1e-09 Sequences not found previously or not previously below threshold: UniRef50_A1WX02 Succinate dehydrogenase subunit D n=1 Tax=Halorh... 43 0.003 CONVERGED! >UniRef50_B5Y349 Fumarate reductase subunit D n=164 Tax=Bacteria RepID=FRDD_KLEP3 Length = 119 Score = 134 bits (338), Expect = 6e-31, Method: Composition-based stats. Identities = 104/119 (87%), Positives = 112/119 (94%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 MINPNPKRSDEPVFWGLFGAGGMW AI+APVM+LLVGILLPLGL P DA SYERVLAFAQ Sbjct: 1 MINPNPKRSDEPVFWGLFGAGGMWGAIVAPVMVLLVGILLPLGLAPADAFSYERVLAFAQ 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 SFIGR F+FLMIVLPLWCGLHR+HHAMHDLKIHVP GKWVFYGLAAIL+V+TL+GV+ I Sbjct: 61 SFIGRAFIFLMIVLPLWCGLHRIHHAMHDLKIHVPNGKWVFYGLAAILSVITLVGVLFI 119 >UniRef50_B1JMQ5 Fumarate reductase D subunit n=13 Tax=Enterobacteriaceae RepID=B1JMQ5_YERPY Length = 118 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 100/118 (84%), Positives = 109/118 (92%) Query: 2 INPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQS 61 +N PKRSDEP+FWGLFGAGGMW AIIAPV+ILLV ILLPLG FPGDALSYER+LAF QS Sbjct: 1 MNQVPKRSDEPIFWGLFGAGGMWGAIIAPVIILLVAILLPLGAFPGDALSYERILAFCQS 60 Query: 62 FIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 FI RVFL LMI+LPLWCGLHR+HHAMHDLKIHVPAGKWVFYGLAAIL+VVT IGV+T+ Sbjct: 61 FISRVFLLLMIILPLWCGLHRIHHAMHDLKIHVPAGKWVFYGLAAILSVVTFIGVLTL 118 >UniRef50_C3LS88 Fumarate reductase subunit D n=57 Tax=Gammaproteobacteria RepID=FRDD_VIBCM Length = 130 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 63/120 (52%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 +IN NPKRSDEPV+W LFGAGG W A+I P+ +L++GIL PLG+ +ALSYERV +FA Sbjct: 11 VINTNPKRSDEPVWWSLFGAGGTWFAMITPITVLVLGILAPLGVIDAEALSYERVSSFAT 70 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP-AGKWVFYGLAAILTVVTLIGVVTI 119 S IG +F+ + LP+W +HR+HH MHDLK H AGK YG A I++ + ++ + I Sbjct: 71 SIIGALFIIGTLALPMWHAMHRVHHGMHDLKFHTGVAGKIACYGFATIISALAVVFIFMI 130 >UniRef50_A4Y2A0 Fumarate reductase subunit D n=13 Tax=Gammaproteobacteria RepID=FRDD_SHEPC Length = 121 Score = 119 bits (299), Expect = 2e-26, Method: Composition-based stats. Identities = 60/120 (50%), Positives = 84/120 (70%), Gaps = 1/120 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 MIN +PKRSDEP++WGLFGAGG+W A+I PV +LL+GILLPL F + Y++V AF Sbjct: 1 MINYSPKRSDEPIWWGLFGAGGVWFAMITPVTVLLMGILLPLHGFGVVDIGYDKVYAFVS 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP-AGKWVFYGLAAILTVVTLIGVVTI 119 IG F L + LP+W +HR+HH +HDL+IH+ GK+ Y AA++TV+ + V+ + Sbjct: 61 HPIGGAFTVLSLSLPMWHAMHRVHHGLHDLQIHLGTVGKYACYLAAALVTVLATVWVIQL 120 >UniRef50_A1SZQ3 Fumarate reductase, D subunit n=4 Tax=Gammaproteobacteria RepID=A1SZQ3_PSYIN Length = 125 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 5/124 (4%) Query: 1 MINPNPK---RSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLA 57 M N K RS EP+FWGLFGAGGM +A + PVMIL+ GIL+PLGL LSYE+V Sbjct: 1 MSNTTEKIYTRSHEPIFWGLFGAGGMLTAFLTPVMILITGILIPLGLIDSKNLSYEKVHH 60 Query: 58 FAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP--AGKWVFYGLAAILTVVTLIG 115 FA S+ G + +++ LPLW LHR++H +HD+ I + YG A ++V Sbjct: 61 FATSWYGAAIVLVLVALPLWHTLHRIYHGLHDIGIKRGRDLQQVFCYGFAFAVSVFVFTL 120 Query: 116 VVTI 119 ++ + Sbjct: 121 LLQM 124 >UniRef50_A4SK02 Fumarate reductase, 13 kDa hydrophobic protein n=2 Tax=Aeromonas RepID=A4SK02_AERS4 Length = 123 Score = 111 bits (277), Expect = 8e-24, Method: Composition-based stats. Identities = 50/120 (41%), Positives = 83/120 (69%), Gaps = 1/120 (0%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M +RSDEP++WGLFGAGGM A++ PV++L+ G+L+P+G+ + +S++R AFA Sbjct: 1 MRRKLMRRSDEPIYWGLFGAGGMVVAMLLPVIVLITGLLVPMGIMDVETMSFDRAHAFAS 60 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP-AGKWVFYGLAAILTVVTLIGVVTI 119 S+ G L ++I LP+W G+HR++H +HDL IH +VFYG A +++ +T+ ++ + Sbjct: 61 SWWGACILLVIIALPIWHGMHRIYHGLHDLGIHTTKLHHYVFYGFAFLVSAITVGLLMVL 120 >UniRef50_C6AP99 Fumarate reductase subunit D n=4 Tax=Pasteurellaceae RepID=C6AP99_AGGAN Length = 114 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 80/119 (67%), Gaps = 5/119 (4%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M+N NPKRS+EP W +F AGGM S + PV+IL++ L P +S + ++AFA Sbjct: 1 MVNQNPKRSNEPPVWLMFSAGGMISGLAFPVLILIL-----GLLLPFGLVSPDNIIAFAH 55 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 ++G++ + + + P+W GLHR+HH MHD+K+HVPAG ++FYGLA + +++ L V I Sbjct: 56 HWVGKLVILALTIFPMWAGLHRVHHGMHDVKVHVPAGGFIFYGLATLYSIIVLFAVCNI 114 >UniRef50_A3N2H4 Fumarate reductase subunit D n=28 Tax=Pasteurellaceae RepID=FRDD_ACTP2 Length = 114 Score = 108 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQ 60 M +PKRS+EP W +F AGG SAI PV++L++ L P + E ++AFA Sbjct: 1 MNKQDPKRSNEPPVWLMFSAGGTISAICFPVLLLIL-----GVLLPLGLVPVENIVAFAH 55 Query: 61 SFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 ++ G++ + + + P+W G+HR+HH +HDLKIH PAG WVFYGL+A+ +V+ V+ + Sbjct: 56 TWFGKLVILAVTIFPMWAGMHRVHHGLHDLKIHFPAGGWVFYGLSALYSVIVFFAVIAL 114 >UniRef50_C7RPL7 Fumarate reductase D subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RPL7_9PROT Length = 123 Score = 106 bits (266), Expect = 1e-22, Method: Composition-based stats. Identities = 53/121 (43%), Positives = 80/121 (66%), Gaps = 2/121 (1%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFA 59 M KRS+ P+FW LFGAGGM SA++ P+++ + GI +PLG+ P D +SY +LAFA Sbjct: 1 MKPTTLKRSNAPIFWALFGAGGMLSALLGPMLVFITGIAVPLGVVLPPDTMSYPHMLAFA 60 Query: 60 QSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAG-KWVFYGLAAILTVVTLIGVVT 118 ++FIG+ F+F +I L LW HR+ H++HD+ IH G K + YG A + T++ ++ Sbjct: 61 KNFIGKGFIFAIIALFLWHAAHRIFHSLHDIGIHAGTGAKLLCYGTAMVGTLIAAYALLA 120 Query: 119 I 119 I Sbjct: 121 I 121 >UniRef50_C8N8D4 Putative uncharacterized protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N8D4_9GAMM Length = 138 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Query: 3 NPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSF 62 + R +P++WGLF GG +A+ +I+++ I LP G A Y+ + F + Sbjct: 22 HARHTRHFKPIYWGLFSVGGTIAALALAPIIIVLSIALPFGWLGSPAEFYQSIHGFVANK 81 Query: 63 IGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAG-KWVFYGLAAILTVVTLIG 115 + L +I +W G+HR ++ +HDL H+ + V Y + + +TL Sbjct: 82 FVYLVLAGVIFAMMWHGVHRFYYLLHDLHYHIGNRFRNVCYLVTIAIFALTLYA 135 >UniRef50_C5RYX1 Fumarate reductase subunit D n=2 Tax=Actinobacillus minor RepID=C5RYX1_9PAST Length = 118 Score = 101 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 49/112 (43%), Positives = 77/112 (68%), Gaps = 5/112 (4%) Query: 8 RSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVF 67 +S+EP W LF AGG SA PV+IL++G+LLP G+ E +++FA +FIG++ Sbjct: 12 KSNEPPVWLLFSAGGSVSAFFFPVVILVLGVLLPFGIVD-----VETIISFAHTFIGKLA 66 Query: 68 LFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 + ++ + P+W G+HR+HH +HDLK+HVPAG ++FYGL+ + T+V L + Sbjct: 67 ILVLTIFPMWAGMHRIHHGLHDLKVHVPAGGFIFYGLSTLYTLVVLYLTFGL 118 >UniRef50_A5EXV9 Fumarate reductase, subunit D n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXV9_DICNV Length = 116 Score = 92.7 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 5 NPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIG 64 N K+ +P++WGLF GG +A+I +I V ILL G+ Y + F Sbjct: 2 NQKQHLKPLYWGLFSVGGTVAALILAPLIASVCILLAFGILGSGEDFYHSIHGFITHKFV 61 Query: 65 RVFLFLMIVLPLWCGLHRMHHAMHDLKIHVP----AGKWVFYGLAAILTVVTLIG 115 L M+ LW G HR ++ +HD+ I V G ++F A ++T++ Sbjct: 62 FFILAGMVFTMLWHGCHRFYYILHDMHIRVDNRMRVGAYLFSIAAFVITLLFGWF 116 >UniRef50_B8EKC9 Fumarate reductase D subunit n=3 Tax=Proteobacteria RepID=B8EKC9_METSB Length = 127 Score = 92.7 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 2/116 (1%) Query: 6 PKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFAQSFIG 64 P RS PVFW LFGAGGM SA+ P +I+L GI+ P G P D + LAFA++ IG Sbjct: 10 PARSVAPVFWLLFGAGGMLSALFGPALIILTGIMAPHGWGVPADFADFPHALAFARNPIG 69 Query: 65 RVFLFLMIVLPLWCGLHRMHHAMHDLKIH-VPAGKWVFYGLAAILTVVTLIGVVTI 119 ++ L +I L W G R+ + D+++ P + YG+AA++TV T + ++ I Sbjct: 70 KLVLLAVISLFFWHGAERLFLTLKDMRVAGAPVLRLATYGVAAVVTVATFVLLLLI 125 >UniRef50_A1KIY4 Fumarate reductase subunit D n=9 Tax=Mycobacterium tuberculosis complex RepID=FRDD_MYCBP Length = 125 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRV 66 +RS EP W LF AGGM +A++APV++LL G+ PLG + +LA ++ I ++ Sbjct: 12 RRSAEPFLWLLFSAGGMVTALVAPVLLLLFGLAFPLGWLDAP--DHGHLLAMVRNPITKL 69 Query: 67 FLFLMIVLPLWCGLHRMHHAMH---DLKIHVPAGKWVFYGLAAILTVVTLIGVVTI 119 + +++VL L+ HR + L YG+A + + ++T+ Sbjct: 70 VVLVLVVLALFHAAHRFRFVLDHGLQLGRFDRVIALWCYGMAVLGSATAGWMLLTM 125 >UniRef50_A4NX44 Monofunctional biosynthetic peptidoglycan transglycosylase n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NX44_HAEIN Length = 61 Score = 64.6 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 28/52 (53%), Positives = 36/52 (69%) Query: 1 MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGLFPGDALSY 52 M++ NPKRS EP W +FGAGG SAI PV+IL++G+LLP GL +Y Sbjct: 1 MVDQNPKRSGEPPVWLMFGAGGTVSAIFFPVVILIIGLLLPFGLVDAHNFNY 52 >UniRef50_A1WX02 Succinate dehydrogenase subunit D n=1 Tax=Halorhodospira halophila SL1 RepID=A1WX02_HALHL Length = 116 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Query: 7 KRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL-FPGDALSYERVLAFAQSFIGR 65 +RS EP W LFGAGG+ +A++ P +ILL GI++P+ + L Y+ + + Sbjct: 2 RRSHEPPLWLLFGAGGLLAALLGPALILLTGIVMPVAAEHGVELLGYQSMRELLARPVVG 61 Query: 66 VFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWV-FYG 103 + + L + + L HR++H + DL + G W YG Sbjct: 62 LAVALGLGVVLCHAAHRIYHTLRDLGVRAGRGTWWACYG 100 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.144 0.431 Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 792,281,777 Number of Sequences: 3077464 Number of extensions: 30279920 Number of successful extensions: 169141 Number of sequences better than 1.0e-01: 28 Number of HSP's better than 0.1 without gapping: 48 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 169039 Number of HSP's gapped (non-prelim): 73 length of query: 119 length of database: 1,040,396,356 effective HSP length: 86 effective length of query: 33 effective length of database: 775,734,452 effective search space: 25599236916 effective search space used: 25599236916 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 87 (38.0 bits)