Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Y	T	S	G	Y	A	H	R	S	S	S	F	S	S	A	A	S	K	I	A	R	V	S	T	E	N	T	T	A	G	L	I	S	E	V	V	Y	R	E	D	Q	P	M	M	T	Q	L	L	L	L	P	L	L	Q	Q	L	G	Q	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?												?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	R	W	Q	L	W	L	T	P	Q	Q	K	L	S	R	E	W	V	Q	A	S	G	L	P	L	T	K	V	M	Q	I	S	Q	L	S	P	C	H	T	V	E	S	M	V	R	A	L	R	T	G	N	Y	S	V	V	I	G	W	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Sequence		D	D	L	T	E	E	E	H	A	E	L	V	D	A	A	N	E	G	N	A	M	G	F	I	M	R	P	V	S	A	S	S	H	A	T	R	Q	L	S	G	L	K	I	H	S	N	L	Y	H
Secondary structure
SS confidence
Disorder																													?	?	?	?	?	?	?	?	?		?	?				?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oft chain C Region: 32 - 147 Aligned: 114 Modelled: 116 Confidence: 100.0% Identity: 26% PDB header:bacterial cell division inhibitor Chain: C: PDB Molecule:hypothetical protein pa3008; PDBTitle: crystal structure of sula from pseudomonas aeruginosa Phyre2 PDB 1ofu chain X Region: 32 - 146 Aligned: 113 Modelled: 115 Confidence: 100.0% Identity: 27% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: Bacterial cell division inhibitor SulA Phyre2 PDB 1xp8 chain A domain 1 Region: 13 - 164 Aligned: 150 Modelled: 152 Confidence: 99.5% Identity: 16% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1xp8 chain A Region: 13 - 164 Aligned: 150 Modelled: 152 Confidence: 99.5% Identity: 16% PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s" Phyre2 PDB 1ube chain A domain 1 Region: 7 - 164 Aligned: 156 Modelled: 158 Confidence: 99.4% Identity: 10% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 1u94 chain A domain 1 Region: 8 - 164 Aligned: 155 Modelled: 157 Confidence: 99.4% Identity: 13% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 2zro chain A Region: 13 - 145 Aligned: 131 Modelled: 133 Confidence: 99.2% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv Phyre2 PDB 3hr8 chain A Region: 13 - 145 Aligned: 131 Modelled: 133 Confidence: 99.2% Identity: 14% PDB header:recombination Chain: A: PDB Molecule:protein reca; PDBTitle: crystal structure of thermotoga maritima reca Phyre2 PDB 2rec chain B Region: 13 - 163 Aligned: 149 Modelled: 151 Confidence: 99.2% Identity: 15% PDB header:helicase PDB COMPND: Phyre2 PDB 1mo6 chain A domain 1 Region: 12 - 145 Aligned: 132 Modelled: 134 Confidence: 99.1% Identity: 12% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 3cmw chain A Region: 13 - 149 Aligned: 135 Modelled: 137 Confidence: 98.9% Identity: 13% PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Phyre2 PDB 3cmv chain G Region: 13 - 164 Aligned: 149 Modelled: 152 Confidence: 98.1% Identity: 13% PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Phyre2 PDB 3io5 chain B Region: 13 - 145 Aligned: 131 Modelled: 133 Confidence: 97.9% Identity: 14% PDB header:dna binding protein Chain: B: PDB Molecule:recombination and repair protein; PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4 Phyre2 PDB 3cmu chain A Region: 26 - 149 Aligned: 122 Modelled: 124 Confidence: 97.4% Identity: 16% PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Phyre2 PDB 1tf7 chain A domain 2 Region: 13 - 145 Aligned: 131 Modelled: 133 Confidence: 72.1% Identity: 9% Fold: P-loop containing nucleoside triphosphate hydrolases Superfamily: P-loop containing nucleoside triphosphate hydrolases Family: RecA protein-like (ATPase-domain) Phyre2 PDB 2w0m chain A Region: 13 - 87 Aligned: 73 Modelled: 75 Confidence: 60.4% Identity: 10% PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2 Phyre2 PDB 2zts chain B Region: 13 - 145 Aligned: 132 Modelled: 133 Confidence: 59.7% Identity: 11% PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 Phyre2 PDB 1j5p chain A domain 4 Region: 89 - 144 Aligned: 54 Modelled: 56 Confidence: 58.4% Identity: 17% Fold: NAD(P)-binding Rossmann-fold domains Superfamily: NAD(P)-binding Rossmann-fold domains Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain Phyre2 PDB 2dc1 chain A Region: 89 - 144 Aligned: 54 Modelled: 56 Confidence: 55.9% Identity: 7% PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus Phyre2 PDB 3lda chain A Region: 12 - 106 Aligned: 93 Modelled: 95 Confidence: 40.8% Identity: 18% PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant Phyre2 1 c1oftC_ 2 d1ofux_ 3 d1xp8a1 4 c1xp8A_ 5 d1ubea1 6 d1u94a1 7 c2zroA_ 8 c3hr8A_ 9 c2recB_ 10 d1mo6a1 11 c3cmwA_ 12 c3cmvG_ 13 c3io5B_ 14 c3cmuA_ 15 d1tf7a2 16 c2w0mA_ 17 c2ztsB_ 18 d1j5pa4 19 c2dc1A_ 20 c3ldaA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1oftC_ 100.0 26 PDB header:bacterial cell division inhibitor Chain: C: PDB Molecule:hypothetical protein pa3008; PDBTitle: crystal structure of sula from pseudomonas aeruginosa 2 d1ofux_ 100.0 27 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Bacterial cell division inhibitor SulA 3 d1xp8a1 99.5 16 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 4 c1xp8A_ 99.5 16 PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s" 5 d1ubea1 99.4 10 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 6 d1u94a1 99.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 7 c2zroA_ 99.2 11 PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv 8 c3hr8A_ 99.2 14 PDB header:recombination Chain: A: PDB Molecule:protein reca; PDBTitle: crystal structure of thermotoga maritima reca 9 c2recB_ 99.2 15 PDB header:helicase PDB COMPND: 10 d1mo6a1 99.1 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 11 c3cmwA_ 98.9 13 PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures 12 c3cmvG_ 98.1 13 PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures 13 c3io5B_ 97.9 14 PDB header:dna binding protein Chain: B: PDB Molecule:recombination and repair protein; PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4 14 c3cmuA_ 97.4 16 PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures 15 d1tf7a2 72.1 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 16 c2w0mA_ 60.4 10 PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2 17 c2ztsB_ 59.7 11 PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 18 d1j5pa4 58.4 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 19 c2dc1A_ 55.9 7 PDB header:oxidoreductase Chain: A: PDB Molecule:l-aspartate dehydrogenase; PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus 20 c3ldaA_ 40.8 18 PDB header:dna binding protein Chain: A: PDB Molecule:dna repair protein rad51; PDBTitle: yeast rad51 h352y filament interface mutant 21 d1rvv1_ not modelled 37.4 10 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 22 c2pjkA_ not modelled 37.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 23 d1nqua_ not modelled 33.5 10 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 24 c2obxH_ not modelled 33.3 17 PDB header:transferase Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1; PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione 25 c1t4gA_ not modelled 31.0 11 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: atpase in complex with amp-pnp 26 d1di0a_ not modelled 31.0 16 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 27 c2de4B_ not modelled 30.5 17 PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid 28 c2dr3A_ not modelled 27.9 3 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0273 protein ph0284; PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3 29 c1j5pA_ not modelled 27.3 15 PDB header:oxidoreductase Chain: A: PDB Molecule:aspartate dehydrogenase; PDBTitle: crystal structure of aspartate dehydrogenase (tm1643) from thermotoga2 maritima at 1.9 a resolution 30 c3k2gA_ not modelled 25.6 12 PDB header:resiniferatoxin binding protein Chain: A: PDB Molecule:resiniferatoxin-binding, phosphotriesterase- PDBTitle: crystal structure of a resiniferatoxin-binding protein from2 rhodobacter sphaeroides 31 c2is8A_ not modelled 24.1 7 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 32 d1y5ea1 not modelled 23.5 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 33 d1n0wa_ not modelled 22.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 34 d1szpa2 not modelled 21.9 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 35 c2i4cA_ not modelled 21.7 19 PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium 36 d1srva_ not modelled 20.9 37 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 37 d1dk7a_ not modelled 19.8 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 38 d1ydwa1 not modelled 18.0 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 39 d2i1qa2 not modelled 17.9 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 40 c2wv9A_ not modelled 17.5 14 PDB header:hydrolase Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus 41 d1v5wa_ not modelled 16.0 12 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 42 d1c2ya_ not modelled 15.7 5 Fold:Lumazine synthase Superfamily:Lumazine synthase Family:Lumazine synthase 43 d1we3a2 not modelled 15.5 37 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 44 d1oela2 not modelled 15.4 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 45 d1sjpa2 not modelled 15.3 32 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 46 d7aata_ not modelled 14.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 47 d1kida_ not modelled 13.9 21 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 48 c3gr1A_ not modelled 13.6 9 PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392) 49 d1o6za1 not modelled 13.0 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 50 d1i0za1 not modelled 12.9 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 51 d1o4sa_ not modelled 12.2 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 52 d1tf7a1 not modelled 12.1 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain) 53 d2ay1a_ not modelled 12.0 16 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 54 d1ldma1 not modelled 11.9 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 55 c3m6cA_ not modelled 11.9 32 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 1; PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain 56 c3mk3L_ not modelled 11.3 10 PDB header:transferase Chain: L: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase; PDBTitle: crystal structure of lumazine synthase from salmonella typhimurium lt2 57 c3oirA_ not modelled 11.2 7 PDB header:transport protein Chain: A: PDB Molecule:sulfate transporter sulfate transporter family protein; PDBTitle: crystal structure of sulfate transporter family protein from wolinella2 succinogenes 58 c1ofgF_ not modelled 10.9 20 PDB header:oxidoreductase Chain: F: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: glucose-fructose oxidoreductase 59 d1c7na_ not modelled 10.7 6 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 60 d1bw0a_ not modelled 10.5 10 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 61 d2q7wa1 not modelled 10.4 13 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 62 c2dflA_ not modelled 10.4 13 PDB header:recombination Chain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament 63 c3o82B_ not modelled 10.3 11 PDB header:ligase Chain: B: PDB Molecule:peptide arylation enzyme; PDBTitle: structure of base n-terminal domain from acinetobacter baumannii bound2 to 5'-o-[n-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine 64 c3ix1A_ not modelled 10.1 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 65 c3ix1B_ not modelled 10.1 18 PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 66 c3un6A_ not modelled 9.5 10 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 67 d1ebfa1 not modelled 9.2 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 68 d1ldna1 not modelled 9.1 23 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 69 d1mkza_ not modelled 9.1 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 70 c3btuD_ not modelled 8.9 14 PDB header:transcription Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k] 71 c1szpC_ not modelled 8.6 14 PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament 72 c3f4lF_ not modelled 8.4 19 PDB header:oxidoreductase Chain: F: PDB Molecule:putative oxidoreductase yhhx; PDBTitle: crystal structure of a probable oxidoreductase yhhx in2 triclinic form. northeast structural genomics target er647 73 d2nu7a1 not modelled 8.3 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 74 d1lc0a1 not modelled 8.2 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 75 d1m5wa_ not modelled 8.2 13 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 76 c1h6dL_ not modelled 7.9 18 PDB header:protein translocation Chain: L: PDB Molecule:precursor form of glucose-fructose PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol 77 c3gr0D_ not modelled 7.7 9 PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362) 78 d1np7a2 not modelled 7.6 29 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 79 c3kxwA_ not modelled 7.6 12 PDB header:ligase Chain: A: PDB Molecule:saframycin mx1 synthetase b; PDBTitle: the crystal structure of fatty acid amp ligase from legionella2 pneumophila 80 d2j07a2 not modelled 7.5 24 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 81 c3r4rB_ not modelled 7.4 25 PDB header:cell adhesion Chain: B: PDB Molecule:hypothetical fimbrial assembly protein; PDBTitle: crystal structure of a hypothetical fimbrial assembly protein2 (bdi_3522) from parabacteroides distasonis atcc 8503 at 2.38 a3 resolution 82 c2x7pA_ not modelled 7.2 7 PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold 83 c3dtyA_ not modelled 7.0 17 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae 84 c3e2yB_ not modelled 6.9 12 PDB header:transferase, lyase Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3; PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine 85 d1owla2 not modelled 6.9 16 Fold:Cryptochrome/photolyase, N-terminal domain Superfamily:Cryptochrome/photolyase, N-terminal domain Family:Cryptochrome/photolyase, N-terminal domain 86 d2gdta1 not modelled 6.7 18 Fold:SARS Nsp1-like Superfamily:SARS Nsp1-like Family:SARS Nsp1-like 87 d1xi9a_ not modelled 6.7 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:AAT-like 88 c3bgwD_ not modelled 6.6 8 PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase 89 d1wu2a3 not modelled 6.5 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 90 c2g29A_ not modelled 6.3 19 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 91 c3fd8A_ not modelled 6.3 17 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis 92 c3umvB_ not modelled 6.3 22 PDB header:lyase Chain: B: PDB Molecule:deoxyribodipyrimidine photo-lyase; PDBTitle: eukaryotic class ii cpd photolyase structure reveals a basis for2 improved uv-tolerance in plants 93 d1to3a_ not modelled 6.1 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 94 d1uxja1 not modelled 6.1 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 95 d1y6ja1 not modelled 6.1 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 96 c3r0zA_ not modelled 5.5 22 PDB header:lyase Chain: A: PDB Molecule:d-serine dehydratase; PDBTitle: crystal structure of apo d-serine deaminase from salmonella2 typhimurium 97 d1guza1 not modelled 5.5 15 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 98 c3ahhA_ not modelled 5.5 7 PDB header:lyase Chain: A: PDB Molecule:xylulose 5-phosphate/fructose 6-phosphate phosphoketolase; PDBTitle: h142a mutant of phosphoketolase from bifidobacterium breve complexed2 with acetyl thiamine diphosphate 99 c3kbqA_ not modelled 5.5 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0