BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (133 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACH0 Heat shock protein 15 n=250 Tax=cellular organis... 270 9e-72 UniRef50_D0FX09 Heat shock protein 15 n=2 Tax=Erwinia pyrifoliae... 224 9e-58 UniRef50_B4F027 Heat shock protein 15 n=3 Tax=Proteus RepID=B4F0... 186 2e-46 UniRef50_Q7MQ01 Ribosome-associated heat shock protein n=3 Tax=G... 178 6e-44 UniRef50_Q3ILP1 Heat shock protein 15, DNA/RNA-binding n=12 Tax=... 160 1e-38 UniRef50_Q15ZC8 RNA-binding S4 n=19 Tax=Gammaproteobacteria RepI... 145 3e-34 UniRef50_Q2SPF7 Ribosome-associated heat shock protein implicate... 142 5e-33 UniRef50_B3PHB2 Heat shock protein 15 n=9 Tax=Proteobacteria Rep... 134 1e-30 UniRef50_A4XP72 RNA-binding S4 domain protein n=56 Tax=Gammaprot... 133 2e-30 UniRef50_A6VR83 RNA-binding S4 domain protein n=3 Tax=Gammaprote... 131 9e-30 UniRef50_Q1QAQ6 RNA-binding S4 n=5 Tax=Moraxellaceae RepID=Q1QAQ... 129 3e-29 UniRef50_Q1YS11 Ribosome-associated heat shock protein implicate... 126 2e-28 UniRef50_Q0A9G5 RNA-binding S4 domain protein n=3 Tax=Ectothiorh... 124 1e-27 UniRef50_Q0EYY2 Heat shock protein 15 n=1 Tax=Mariprofundus ferr... 123 2e-27 UniRef50_Q500C9 RNA-binding S4 n=13 Tax=Gammaproteobacteria RepI... 118 4e-26 UniRef50_B8GNB4 RNA-binding S4 domain protein n=7 Tax=Proteobact... 113 2e-24 UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=2... 112 3e-24 UniRef50_Q1H1V4 RNA-binding S4 n=2 Tax=Proteobacteria RepID=Q1H1... 112 3e-24 UniRef50_B9Z2X0 RNA-binding S4 domain protein n=2 Tax=Neisseriac... 109 2e-23 UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma prot... 108 4e-23 UniRef50_C4ZJ47 RNA-binding S4 domain protein n=1 Tax=Thauera sp... 106 2e-22 UniRef50_C6WVI1 RNA-binding S4 domain protein n=1 Tax=Methyloten... 104 1e-21 UniRef50_Q0AD54 RNA-binding S4 domain protein n=3 Tax=Nitrosomon... 101 6e-21 UniRef50_A9BZ53 RNA-binding S4 domain protein n=8 Tax=Bacteria R... 101 6e-21 UniRef50_C6P442 RNA-binding S4 domain protein n=1 Tax=Sideroxyda... 99 4e-20 UniRef50_A5EY77 Ribosome-associated heat shock protein n=2 Tax=C... 98 6e-20 UniRef50_C1A9Y0 Heat shock protein 15 n=1 Tax=Gemmatimonas auran... 96 5e-19 UniRef50_C9YFQ6 Putative uncharacterized protein n=1 Tax=Curviba... 96 5e-19 UniRef50_Q1NY04 RNA-binding S4 n=1 Tax=delta proteobacterium MLM... 96 5e-19 UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium... 96 5e-19 UniRef50_C7RIC4 RNA-binding S4 domain protein n=1 Tax=Candidatus... 95 6e-19 UniRef50_D0J2J0 RNA-binding S4 n=5 Tax=Bacteria RepID=D0J2J0_COMTE 93 3e-18 UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobact... 91 2e-17 UniRef50_C5V1W3 RNA-binding S4 domain protein n=1 Tax=Gallionell... 89 5e-17 UniRef50_Q01Z85 RNA-binding S4 domain protein n=4 Tax=Bacteria R... 87 2e-16 UniRef50_Q2P648 Heat shock protein 15 homolog n=13 Tax=Xanthomon... 84 1e-15 UniRef50_A6T2N5 Heat shock protein 15 n=3 Tax=Proteobacteria Rep... 83 3e-15 UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothioba... 82 5e-15 UniRef50_C7I4L5 RNA-binding S4 domain protein n=1 Tax=Thiomonas ... 82 7e-15 UniRef50_B1Y782 RNA-binding S4 domain protein n=5 Tax=Burkholder... 79 6e-14 UniRef50_B2UBP9 RNA-binding S4 domain protein n=11 Tax=cellular ... 78 7e-14 UniRef50_Q31JR0 RNA-binding S4-domain protein n=1 Tax=Thiomicros... 74 1e-12 UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaprote... 73 2e-12 UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID... 73 3e-12 UniRef50_A7HTT3 RNA-binding S4 domain protein n=10 Tax=Alphaprot... 73 3e-12 UniRef50_Q2RYB5 RNA-binding S4 n=1 Tax=Rhodospirillum rubrum ATC... 73 4e-12 UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID... 72 5e-12 UniRef50_Q169A4 Heat shock protein, putative n=22 Tax=Rhodobacte... 72 6e-12 UniRef50_C9LEL6 Heat shock protein 15 n=5 Tax=Prevotella RepID=C... 71 1e-11 UniRef50_Q0BI23 RNA-binding S4 domain protein n=59 Tax=Betaprote... 70 2e-11 UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicro... 67 2e-10 UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 66 3e-10 UniRef50_B9XC61 RNA-binding S4 domain protein n=2 Tax=Verrucomic... 66 3e-10 UniRef50_B4WYP3 Putative uncharacterized protein n=1 Tax=Alcaniv... 66 4e-10 UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicro... 65 9e-10 UniRef50_UPI000050FC77 heat shock protein Hsp15 n=1 Tax=Brevibac... 64 1e-09 UniRef50_C5C3U9 RNA-binding S4 domain protein n=12 Tax=Actinomyc... 64 2e-09 UniRef50_D1W8V5 S4 domain protein n=2 Tax=Prevotella RepID=D1W8V... 63 3e-09 UniRef50_A6G6M5 Putative uncharacterized protein n=1 Tax=Plesioc... 63 3e-09 UniRef50_C7PRL2 RNA-binding S4 domain protein n=1 Tax=Chitinopha... 63 3e-09 UniRef50_C6Y288 RNA-binding S4 domain protein n=4 Tax=Sphingobac... 60 2e-08 UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospiril... 60 3e-08 UniRef50_Q0S6G3 Ribosome-associated heat shock protein n=7 Tax=A... 60 3e-08 UniRef50_D0L3C9 RNA-binding S4 domain protein n=31 Tax=Bacteria ... 59 4e-08 UniRef50_C5VMC9 Heat shock protein 15 n=1 Tax=Prevotella melanin... 59 4e-08 UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 59 4e-08 UniRef50_Q7MXL0 Heat shock protein 15 n=32 Tax=Bacteroidales Rep... 59 5e-08 UniRef50_B5JNJ8 S4 domain protein n=1 Tax=Verrucomicrobiae bacte... 59 6e-08 UniRef50_A0K0Y7 RNA-binding S4 domain protein n=12 Tax=Actinobac... 58 8e-08 UniRef50_C7LE02 S4 domain protein n=38 Tax=Rhizobiales RepID=C7L... 57 1e-07 UniRef50_A3UGK9 S4 domain protein n=1 Tax=Oceanicaulis alexandri... 57 2e-07 UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiale... 57 2e-07 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 57 2e-07 UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales R... 56 4e-07 UniRef50_Q0AMA8 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 56 4e-07 UniRef50_Q47PE2 RNA-binding S4 n=1 Tax=Thermobifida fusca YX Rep... 55 5e-07 UniRef50_B6R6S6 RNA-binding S4 n=3 Tax=Alphaproteobacteria RepID... 55 5e-07 UniRef50_C0BJS5 RNA-binding S4 domain protein n=1 Tax=Flavobacte... 55 6e-07 UniRef50_B0SXM9 RNA-binding S4 domain protein n=1 Tax=Caulobacte... 55 6e-07 UniRef50_B4RFP2 Ribosome-associated heat shock protein n=6 Tax=C... 55 8e-07 UniRef50_UPI000174635B protein containing RNA-binding S4 domain ... 54 1e-06 UniRef50_C2MAE5 Heat shock protein 15 n=8 Tax=Bacteria RepID=C2M... 54 1e-06 UniRef50_A3VNF6 S4 domain protein n=1 Tax=Parvularcula bermudens... 54 2e-06 UniRef50_D2NQJ7 Ribosome-associated heat shock protein n=6 Tax=A... 53 2e-06 UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis R... 53 3e-06 UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacte... 52 6e-06 UniRef50_C6X0Q5 Ribosome-associated heat shock protein n=1 Tax=F... 52 6e-06 UniRef50_Q6AE36 Ribosome-associated heat shock protein n=1 Tax=L... 51 1e-05 UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-2... 51 1e-05 UniRef50_Q0BWQ4 S4 domain protein n=1 Tax=Hyphomonas neptunium A... 51 1e-05 UniRef50_C8WQS2 RNA-binding S4 domain protein n=2 Tax=Alicycloba... 50 1e-05 UniRef50_C0YT05 Heat shock protein 15 n=2 Tax=Flavobacteriaceae ... 50 2e-05 UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4... 50 2e-05 UniRef50_A8RA49 Putative uncharacterized protein n=2 Tax=unclass... 50 3e-05 UniRef50_Q9KGI8 Uncharacterized protein BH0073 n=176 Tax=Firmicu... 49 4e-05 UniRef50_B0MVH7 Putative uncharacterized protein n=1 Tax=Alistip... 49 6e-05 UniRef50_A3DIS8 RNA-binding S4 n=7 Tax=Clostridiales RepID=A3DIS... 48 9e-05 UniRef50_Q11CX7 RNA-binding S4 n=1 Tax=Chelativorans sp. BNC1 Re... 48 9e-05 UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litorali... 47 1e-04 UniRef50_A0M418 Protein containing RNA-binding S4 domain n=18 Ta... 47 2e-04 UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q... 47 2e-04 UniRef50_B8FZC2 RNA-binding S4 domain protein n=2 Tax=Desulfitob... 45 5e-04 UniRef50_P37557 Uncharacterized protein yabO n=25 Tax=Bacteria R... 45 6e-04 UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC25... 45 8e-04 UniRef50_P64406 Uncharacterized protein spr0007 n=42 Tax=Bacteri... 45 0.001 UniRef50_A9NE18 S4 RNA-binding domain protein n=1 Tax=Acholeplas... 42 0.004 UniRef50_Q03N19 Ribosome-associated heat shock protein implicate... 42 0.005 UniRef50_C8P218 S4 domain protein n=1 Tax=Erysipelothrix rhusiop... 42 0.005 UniRef50_Q9ZIM1 Uncharacterized protein Lmo0216 n=117 Tax=Bacter... 42 0.008 UniRef50_C5RJP4 RNA-binding S4 domain protein n=2 Tax=Clostridiu... 41 0.013 UniRef50_Q9ZJJ0 Uncharacterized protein jhp_1318 n=14 Tax=Helico... 39 0.037 UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepI... 39 0.038 UniRef50_A6QAM8 RNA-binding S4 protein n=6 Tax=Epsilonproteobact... 39 0.048 UniRef50_D1B612 RNA-binding S4 domain protein n=2 Tax=Synergista... 39 0.076 UniRef50_C9RA17 RNA-binding S4 domain protein n=1 Tax=Ammonifex ... 38 0.077 >UniRef50_P0ACH0 Heat shock protein 15 n=250 Tax=cellular organisms RepID=HSLR_ECO57 Length = 133 Score = 270 bits (690), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG Sbjct: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE Sbjct: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 Query: 121 RRDLLRFKHGDSE 133 RRDLLRFKHGDSE Sbjct: 121 RRDLLRFKHGDSE 133 >UniRef50_D0FX09 Heat shock protein 15 n=2 Tax=Erwinia pyrifoliae RepID=D0FX09_ERWPY Length = 133 Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 106/133 (79%), Positives = 119/133 (89%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 MKEK VRLDKWLWAARFYKTRA AR+MIEGGKVHYNGQRSKPSK+VE+ ATLTLRQG Sbjct: 1 MKEKTGEGVRLDKWLWAARFYKTRAAARQMIEGGKVHYNGQRSKPSKLVEIAATLTLRQG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 NDERTVIV A++++R PASEA LLY ETAES+ KREK+ALARK+NAL+MPHPDRRPDKKE Sbjct: 61 NDERTVIVAAVSDKRGPASEAQLLYSETAESIAKREKVALARKMNALSMPHPDRRPDKKE 120 Query: 121 RRDLLRFKHGDSE 133 RRDL++FKH E Sbjct: 121 RRDLMKFKHSGDE 133 >UniRef50_B4F027 Heat shock protein 15 n=3 Tax=Proteus RepID=B4F027_PROMH Length = 137 Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/123 (73%), Positives = 102/123 (82%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARFYKTRA+AR MIEGGKVHYNG R KPSK VE+ A + LRQGNDERTV V Sbjct: 10 VRLDKWLWAARFYKTRAIARTMIEGGKVHYNGVRGKPSKNVEVGAEIRLRQGNDERTVTV 69 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 ++ QR A++A LLY ET ES+ KREK+ALARK+NALTMPHP+RRPDKKERR LLR K Sbjct: 70 LMVSAQRLGAAQAQLLYCETPESIAKREKIALARKMNALTMPHPERRPDKKERRTLLRLK 129 Query: 129 HGD 131 + Sbjct: 130 QTN 132 >UniRef50_Q7MQ01 Ribosome-associated heat shock protein n=3 Tax=Gammaproteobacteria RepID=Q7MQ01_VIBVY Length = 130 Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 83/125 (66%), Positives = 102/125 (81%), Gaps = 1/125 (0%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 P VRLDKWLWAARFYKTR++AR+M++GGKVHYNGQR+KPSKIVE+ A L LRQGN+E+ Sbjct: 6 PNEAVRLDKWLWAARFYKTRSIARDMVDGGKVHYNGQRAKPSKIVEVGAVLKLRQGNEEK 65 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 TV+++ ++ QRR A EA LY ET ES KRE A+ RKLNA P PDRRPDKK+RRD+ Sbjct: 66 TVVIEKLSTQRRGAPEAQTLYSETQESQAKREAQAMQRKLNAHN-PSPDRRPDKKQRRDI 124 Query: 125 LRFKH 129 ++FKH Sbjct: 125 IKFKH 129 >UniRef50_Q3ILP1 Heat shock protein 15, DNA/RNA-binding n=12 Tax=Proteobacteria RepID=Q3ILP1_PSEHT Length = 140 Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/128 (58%), Positives = 100/128 (78%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K +++RLDKWLWAARFYKTRA AREM++GGKVHYNGQR+K KIVE+ AT+ L QG Sbjct: 11 LEHKDELKIRLDKWLWAARFYKTRAAAREMVQGGKVHYNGQRTKAGKIVEIGATIKLAQG 70 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 DE+ V V I E+R+ A A LY+E+ S+ KRE+ ++ARK N+L PHPD++PDKK+ Sbjct: 71 VDEKIVTVLKILEKRQSAPIAQTLYQESDASIAKREENSIARKNNSLFAPHPDKKPDKKQ 130 Query: 121 RRDLLRFK 128 RR+LL+ K Sbjct: 131 RRELLKLK 138 >UniRef50_Q15ZC8 RNA-binding S4 n=19 Tax=Gammaproteobacteria RepID=Q15ZC8_PSEA6 Length = 138 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/121 (58%), Positives = 88/121 (72%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARF+KTRALARE + GKV YNGQR KPSK VEL T+ + QG D + +IV Sbjct: 17 VRLDKWLWAARFFKTRALAREAVMSGKVSYNGQRCKPSKAVELKVTIKVPQGYDVKEIIV 76 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + E RR A A ++EET ES+ +REK A RKL+A P PD+RPDKK+RR +++ K Sbjct: 77 VELAEHRRSAPLAQRMFEETPESLAQREKNAEMRKLSAFHSPKPDQRPDKKQRRQIIQLK 136 Query: 129 H 129 H Sbjct: 137 H 137 >UniRef50_Q2SPF7 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=15 Tax=Gammaproteobacteria RepID=Q2SPF7_HAHCH Length = 137 Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 73/121 (60%), Positives = 91/121 (75%), Gaps = 2/121 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARFYKTR LA+E IEGG+VHYNG R KP ++VE A +TL+QG E+TV+V Sbjct: 12 VRLDKWLWAARFYKTRTLAKEAIEGGRVHYNGARVKPGRVVEAGAEVTLKQGWSEKTVLV 71 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARK-LNALTMPHPDRRPDKKERRDLLRF 127 I+E+R PA A LY+ET SVEKRE++A +K + A +P P RRP KK+RR + RF Sbjct: 72 LDISEKRGPAPVAQKLYQETEASVEKREQLAWQQKQIQAAQLP-PARRPTKKQRRMIHRF 130 Query: 128 K 128 K Sbjct: 131 K 131 >UniRef50_B3PHB2 Heat shock protein 15 n=9 Tax=Proteobacteria RepID=B3PHB2_CELJU Length = 149 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 67/120 (55%), Positives = 86/120 (71%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DKWLWAARF+KTR+LA++ I+GGK+H +GQR K SK V + L +RQ DE+TV+V Sbjct: 21 IRIDKWLWAARFFKTRSLAKQAIDGGKIHCDGQRIKASKEVTIGLVLNIRQDWDEKTVVV 80 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 KA+++QRR A EAALLY ET SV REK L RK D RP+KKERR + RF+ Sbjct: 81 KALSDQRRGAPEAALLYAETEASVALREKRRLERKAGLGAFIVSDHRPNKKERRQIHRFQ 140 >UniRef50_A4XP72 RNA-binding S4 domain protein n=56 Tax=Gammaproteobacteria RepID=A4XP72_PSEMY Length = 170 Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/127 (56%), Positives = 86/127 (67%), Gaps = 1/127 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M EK +VRLDKWLWAARFYKTRALA+ IEGGKVH+ G+R KP K + LR G Sbjct: 28 MSEKDDDKVRLDKWLWAARFYKTRALAKAAIEGGKVHHRGERCKPGKEPRIGDEYVLRTG 87 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 DERTV+V A++ RR A EA LLY ET ES+ +RE+ A RK AL M D RP KK+ Sbjct: 88 FDERTVVVLALSAVRRGAPEAQLLYRETDESIARREQAAAMRKAGALGM-QTDGRPSKKQ 146 Query: 121 RRDLLRF 127 RR + +F Sbjct: 147 RRQIHQF 153 >UniRef50_A6VR83 RNA-binding S4 domain protein n=3 Tax=Gammaproteobacteria RepID=A6VR83_MARMS Length = 138 Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 68/121 (56%), Positives = 86/121 (71%), Gaps = 3/121 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARF+KTR+L ++ I+GGKV YNG + K S+ VE+ A + +R G DE+ V + Sbjct: 13 VRLDKWLWAARFFKTRSLCKDAIDGGKVSYNGSKGKASRNVEIGALIGIRVGWDEKVVKI 72 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARK-LNALTMPHPDRRPDKKERRDLLRF 127 K I+ QRR A EA LLYEET ES+EKREK AL K M D +P+KKERRD+ + Sbjct: 73 KDISGQRRGAPEAQLLYEETPESIEKREKRALENKSFGGRIM--SDHKPNKKERRDIKQL 130 Query: 128 K 128 K Sbjct: 131 K 131 >UniRef50_Q1QAQ6 RNA-binding S4 n=5 Tax=Moraxellaceae RepID=Q1QAQ6_PSYCK Length = 146 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 6/127 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN---- 61 AV +RLDKWLWAARFY+TR LA+E IE G+VHY G R+K SK + + L +RQG+ Sbjct: 18 AVRMRLDKWLWAARFYRTRTLAKEAIESGRVHYAGSRAKTSKEITVGDELQIRQGSATAM 77 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 E+TV+V+A+T QR A+ A +LY ET ES+ +R A RKL + PD +P+KKER Sbjct: 78 TEKTVVVEALTAQRGNATAAEVLYSETEESIARRAYYAEQRKL--ANLARPDNKPNKKER 135 Query: 122 RDLLRFK 128 RDL RFK Sbjct: 136 RDLHRFK 142 >UniRef50_Q1YS11 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit n=2 Tax=Proteobacteria RepID=Q1YS11_9GAMM Length = 124 Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/121 (54%), Positives = 87/121 (71%), Gaps = 3/121 (2%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 +VR+DKWLWAARF+KTR+LA+ IEGGKV +G +SK S+ +EL LT+RQG D +TV Sbjct: 3 KVRIDKWLWAARFFKTRSLAKSAIEGGKVQIDGNKSKASRQLELGTILTIRQGFDSKTVE 62 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREK-MALARKLNALTMPHPDRRPDKKERRDLLR 126 V ++EQRR A EA LLY ETAES+ REK AL + N ++ D +P+KK+RR + R Sbjct: 63 VIGLSEQRRGAPEALLLYTETAESIALREKDSALRKAANGSSI--SDGKPNKKQRRQIHR 120 Query: 127 F 127 F Sbjct: 121 F 121 >UniRef50_Q0A9G5 RNA-binding S4 domain protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A9G5_ALHEH Length = 136 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 63/131 (48%), Positives = 85/131 (64%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++P +VRLD+WLWAARF+KTR LA E I+GGKV +G +KP++ V + +R+G Sbjct: 6 DQPTAKVRLDRWLWAARFFKTRRLAVEAIKGGKVEVDGVNAKPAREVGAGNRVRVRKGAI 65 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 V+V+ + QR PA A LYEET ESV REK+ +++NA +P PD RPDK+ RR Sbjct: 66 TFEVVVRDVANQRGPAKVAQQLYEETPESVAAREKVREQQRMNAAFVPRPDHRPDKRSRR 125 Query: 123 DLLRFKHGDSE 133 L R K G E Sbjct: 126 QLARVKRGGGE 136 >UniRef50_Q0EYY2 Heat shock protein 15 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYY2_9PROT Length = 129 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 60/124 (48%), Positives = 81/124 (65%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 VR+DKWLWAARF+KTR LA EM+ GG V NG R+K S+ V++ TL++++ + V Sbjct: 5 SVRIDKWLWAARFFKTRGLATEMVSGGHVQINGDRAKASRAVQVGDTLSIQREQELFIVT 64 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V + E+R A+ A LY+ETA SV R RKL+A + P P+RRPDKK RR ++RF Sbjct: 65 VTGLAEKRGSATIAQTLYQETAASVAARATQQQLRKLHAASAPAPERRPDKKARRQIIRF 124 Query: 128 KHGD 131 D Sbjct: 125 TRRD 128 >UniRef50_Q500C9 RNA-binding S4 n=13 Tax=Gammaproteobacteria RepID=Q500C9_PSEU2 Length = 135 Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/120 (51%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARF+KTRALA+ IE GKVH G+R KP K + +R G D+RTV+V Sbjct: 11 VRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIRMGFDDRTVVV 70 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 +A++ RR A EA LY ET ES+ +RE A RK L + D +P KK+RR+L F+ Sbjct: 71 EALSIVRRGAPEAQTLYHETPESIARRENAAAQRKAGNLGVT-TDGKPTKKQRRELFGFR 129 >UniRef50_B8GNB4 RNA-binding S4 domain protein n=7 Tax=Proteobacteria RepID=B8GNB4_THISH Length = 125 Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 59/115 (51%), Positives = 74/115 (64%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+DKWLWAARF+KTRALA E + GGKVH G+R KP++ V L + +G + V + Sbjct: 5 RIDKWLWAARFFKTRALAAEAVSGGKVHVGGERVKPARAVRPGEHLRITRGQETWEVEIL 64 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + EQRRPA+EA LY E ES +RE A R+L PH D RPDK+ERR L Sbjct: 65 GLNEQRRPAAEAQRLYAERPESRARREAEAEQRRLLHAATPHMDHRPDKRERRQL 119 >UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=27 Tax=Neisseriaceae RepID=B4RLH8_NEIG2 Length = 133 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 1/132 (0%) Query: 1 MKEK-PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ 59 MK+K + +RLDKWLWAARF+KTR+LA++ IE G+V NG + K SK +++ + L Sbjct: 1 MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKNSKTIDIGDIIDLTL 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 + + VK + QRRPA EA LLYEE A++ RE+ + + +T HPD RP K+ Sbjct: 61 NSLPHKIKVKGLNHQRRPAPEARLLYEEDAKTAALREECKQLDQFSRITSAHPDGRPTKR 120 Query: 120 ERRDLLRFKHGD 131 +RR L R K GD Sbjct: 121 DRRQLDRLKKGD 132 >UniRef50_Q1H1V4 RNA-binding S4 n=2 Tax=Proteobacteria RepID=Q1H1V4_METFK Length = 131 Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 57/119 (47%), Positives = 79/119 (66%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 RLDKWLWAARF+KTR+LA E ++ GKVH +G R KP+K V L + +R+ E V+V Sbjct: 8 CRLDKWLWAARFFKTRSLASEAVDTGKVHVDGDRVKPAKEVRLGQRIHIRRKEMEVEVVV 67 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 + ++ QRR A EAALLYEET ES+ +RE + + R+ RP K++RRD+ +F Sbjct: 68 RGLSTQRRGAPEAALLYEETPESISRRENLTVTREHEHARRERGMGRPTKRQRRDIKKF 126 >UniRef50_B9Z2X0 RNA-binding S4 domain protein n=2 Tax=Neisseriaceae RepID=B9Z2X0_9NEIS Length = 136 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/123 (48%), Positives = 78/123 (63%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARFYKTR LA E +E G+V G+R K S++V++ L LR E + V Sbjct: 14 VRLDKWLWAARFYKTRQLAHEALELGRVTLGGERVKASRVVKVGDRLHLRINQLEYDIEV 73 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + +T QRR ASEA LLY E+ S RE+ K ++ PH RP KK+RR++ RFK Sbjct: 74 RTLTAQRRSASEAQLLYAESEASRLAREEKQALLKAERVSFPHGAGRPTKKDRREIQRFK 133 Query: 129 HGD 131 +G Sbjct: 134 NGS 136 >UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS43_9GAMM Length = 134 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/125 (46%), Positives = 79/125 (63%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDKWLWAARFYKTR+LA I GG VH N +R KP+K ++ + +R+G E T++V Sbjct: 10 LRLDKWLWAARFYKTRSLATAAISGGHVHLNSERIKPAKTLKCGDEVRIRKGQMEITIVV 69 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 +AI+++R PA+ A LY ETAES KRE+ + +P RPDK +R+L R K Sbjct: 70 EAISDRRGPAAVAQTLYRETAESQIKREQDKSQIRAERAALPTTRGRPDKHTQRELRRLK 129 Query: 129 HGDSE 133 E Sbjct: 130 KEQGE 134 >UniRef50_C4ZJ47 RNA-binding S4 domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJ47_THASP Length = 133 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/119 (47%), Positives = 76/119 (63%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 RLDKWLWAARF+K R A E ++GGKV NG +KP++ +++ L + G D RTVIV Sbjct: 12 TRLDKWLWAARFFKHRTGATEAVDGGKVKLNGMAAKPARELKVGDRLDITIGEDTRTVIV 71 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 +AI ++R A+ A LYEETAES+E RE+ RK A RP K++RR + RF Sbjct: 72 RAIADKRGSAAVAQALYEETAESIEARERARELRKFAAAPGADLHGRPTKRDRRRMDRF 130 >UniRef50_C6WVI1 RNA-binding S4 domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WVI1_METML Length = 132 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 78/130 (60%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M + + RLDKWLWAARF+KTR+LA I+ GKVH +G R KP+K V + T+ +R Sbjct: 1 MASEADSKCRLDKWLWAARFFKTRSLATTAIDTGKVHVDGDRVKPAKEVHIGQTIHIRNR 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + E V V+A++ R+ A EAALLY ET S+ KRE L + + RP K++ Sbjct: 61 DFEIEVTVQALSNVRKGAPEAALLYTETPASISKRENAKLTGEHDFAQRDRGAGRPTKRQ 120 Query: 121 RRDLLRFKHG 130 RD+ +F G Sbjct: 121 LRDIKKFTGG 130 >UniRef50_Q0AD54 RNA-binding S4 domain protein n=3 Tax=Nitrosomonas RepID=Q0AD54_NITEC Length = 136 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 60/128 (46%), Positives = 81/128 (63%), Gaps = 9/128 (7%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 ++R+DKWL+AARFYKTR+ A + +E G+V NG R KPS+I+ ++ L +R G V Sbjct: 12 KLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLDIRIGPYHHRVK 71 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR-----RPDKKERR 122 V A++ QRR A+EA LLY+ET ES + RE +A K + P P R RP K+ RR Sbjct: 72 VLALSNQRRSATEARLLYQETEESRQAREMLAGELK----SQPTPPRYAGKGRPTKRVRR 127 Query: 123 DLLRFKHG 130 DL RF G Sbjct: 128 DLERFVDG 135 >UniRef50_A9BZ53 RNA-binding S4 domain protein n=8 Tax=Bacteria RepID=A9BZ53_DELAS Length = 149 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 55/121 (45%), Positives = 78/121 (64%), Gaps = 6/121 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDKWLW ARFYKTR+LA E I G++ NG KP++ V T+ LRQG RTV++ Sbjct: 7 MRLDKWLWCARFYKTRSLAVEEIGKGRITVNGALVKPAREVRCGDTVALRQGQIPRTVVI 66 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKL-----NALTMPHPDRRPDKKERRD 123 + ++ R PA A LYEETA S+ +RE++A R+L +++ H D RP K++RR Sbjct: 67 RGLSGMRGPAPVAQALYEETAASLAERERLAEQRRLAPEPASSIADQH-DGRPTKRDRRQ 125 Query: 124 L 124 + Sbjct: 126 I 126 >UniRef50_C6P442 RNA-binding S4 domain protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P442_9PROT Length = 144 Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 2/123 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 ++R+DKWLWAARF+KTR+LA + +E GKV G R KP+K + + L +R G + Sbjct: 11 KLRIDKWLWAARFFKTRSLAVDAVESGKVTMGGVRIKPAKAIVVGDQLDIRLGQYHFAIE 70 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V A+ +R PA+EA LY E+ ES +R ++A L AL P RP K++RRD+ RF Sbjct: 71 VLALANRRGPAAEAQKLYRESDESRARRAEIAA--NLKALPQPTFKGRPTKRDRRDIERF 128 Query: 128 KHG 130 + G Sbjct: 129 EAG 131 >UniRef50_A5EY77 Ribosome-associated heat shock protein n=2 Tax=Cardiobacteriaceae RepID=A5EY77_DICNV Length = 139 Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/124 (45%), Positives = 81/124 (65%), Gaps = 5/124 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT--V 66 VRLD+WLWAARF+KTR +A + I+ G+V NGQR+KP++ + + TLT+ Q E V Sbjct: 17 VRLDQWLWAARFFKTRPVAVQNIKNGRVLVNGQRAKPARTISVGDTLTI-QKTPELCFEV 75 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL-- 124 V A+ +R A A LY+ET S+ R+++AL ++L + P RRPDK+ERR L Sbjct: 76 NVLALENKRLGAKLATALYQETEASIHNRQELALRQQLAKSLVQFPTRRPDKRERRALRS 135 Query: 125 LRFK 128 LR++ Sbjct: 136 LRYQ 139 >UniRef50_C1A9Y0 Heat shock protein 15 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Y0_GEMAT Length = 147 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 P VRLDKWLWAARFYKTRALA E I+GGK NG+R+K +K V+ + LRQG E Sbjct: 21 PVERVRLDKWLWAARFYKTRALAAEAIDGGKADVNGERAKRAKPVQAGDEVRLRQGPIEW 80 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + + ++ +R A A LYEET + +RE+++ + + D +P K++RR L Sbjct: 81 CLKILDVSARRGSAEIARQLYEETEDGRVRRERVSEHLRSMPTGFAYGDSKPGKRDRRAL 140 Query: 125 LRFKHGDS 132 R K GD Sbjct: 141 RRLK-GDG 147 >UniRef50_C9YFQ6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFQ6_9BURK Length = 319 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/121 (46%), Positives = 77/121 (63%), Gaps = 9/121 (7%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 R+DKWLWAARF+KTR+LA + + G+V + G+ KP+K V+ TLT+ QG +RTV V Sbjct: 4 TRIDKWLWAARFFKTRSLATDEVNLGRVQWEGRDVKPAKEVKAGDTLTIWQGKVKRTVEV 63 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR-----RPDKKERRD 123 I+EQR PA A L+Y ET ESV++R A ++L+ P P RP K++RR Sbjct: 64 LQISEQRGPAPVAQLMYAETPESVQQRLAAAEQQRLS----PEPAHTIAGGRPTKRDRRA 119 Query: 124 L 124 L Sbjct: 120 L 120 >UniRef50_Q1NY04 RNA-binding S4 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY04_9DELT Length = 132 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 1/123 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A ++RLD WLWAARF+KTR LA + + GGKVH NG R K +++V + L +R+G T Sbjct: 5 AEKIRLDIWLWAARFFKTRTLAGQAVSGGKVHLNGGRVKAARLVGSDDLLEIRKGVLAFT 64 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH-PDRRPDKKERRDL 124 V V+ + QR A AA LYEE+ ES+ R+ + R+ A P P +P K++RR + Sbjct: 65 VTVRGTSRQRLAAPLAAELYEESPESLAARQAASQERRTAAKAGPQAPRGKPAKRDRRLI 124 Query: 125 LRF 127 +F Sbjct: 125 KKF 127 >UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ35_HALO1 Length = 167 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/128 (43%), Positives = 80/128 (62%), Gaps = 6/128 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARF+KTR+LA + + GGKV NG KP+K V++ L +R+G E + V Sbjct: 41 VRLDKWLWAARFFKTRSLAAQEVTGGKVQLNGDHVKPAKPVKVGDVLRIRKGMFEHEITV 100 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMA----LARKLNALTMP-HPDRRPDKKERRD 123 + +R P ++A LYEE+ S + RE++A L R+ + +P RP K++RR Sbjct: 101 IKLGARRGPPAQAQGLYEESEASKQAREELAERLRLEREHSLPPIPKFAKGRPTKRDRRQ 160 Query: 124 LLRFKHGD 131 + RFK GD Sbjct: 161 IDRFK-GD 167 >UniRef50_C7RIC4 RNA-binding S4 domain protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RIC4_9PROT Length = 134 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 1/127 (0%) Query: 5 PAVE-VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 PA+E +R+DKWLW ARFYKTR+LA + I G V G KP++ + +L + G+ Sbjct: 7 PAIEYIRIDKWLWTARFYKTRSLAAQAIAAGHVRLAGHPVKPARDLRCGDSLEIAIGDTI 66 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 +V+V+ + EQRRPA EA LYEET S E+R R L + RP KK RR Sbjct: 67 WSVVVRGLNEQRRPAVEAQQLYEETRASSERRATQRETRLLAPVPGSDLRGRPTKKARRQ 126 Query: 124 LLRFKHG 130 + F G Sbjct: 127 IRGFNEG 133 >UniRef50_D0J2J0 RNA-binding S4 n=5 Tax=Bacteria RepID=D0J2J0_COMTE Length = 158 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 4/125 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDKWLW ARFYKTR+LA E I G+V N +K S+ + + LRQGN R VIV Sbjct: 19 MRLDKWLWCARFYKTRSLAVEEIGKGRVTVNNANAKASREIRPGDHIHLRQGNIPREVIV 78 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR----RPDKKERRDL 124 + ++ R PA A LYEETA+S+ +RE++A R+L RP K++RR++ Sbjct: 79 RGLSGMRGPAPVAQQLYEETAQSIAQREQLAEQRRLAPEPAEALAAQHTGRPTKRDRREI 138 Query: 125 LRFKH 129 R + Sbjct: 139 DRVRQ 143 >UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobacteria RepID=A0LDZ0_MAGSM Length = 130 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 77/123 (62%), Gaps = 5/123 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DKWLWAARF+KTRALA + + GG VH NGQR K S V++ L + +G + +++ Sbjct: 9 LRIDKWLWAARFFKTRALATDAVNGGHVHLNGQRIKASHQVKVGDRLEITKGPVQFALVI 68 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR---RPDKKERRDLL 125 + + ++R PA A LY E+ S K+ ++A+A + A + PD RP K++RR + Sbjct: 69 EGLHDKRGPAPAAQQLYCESEAS--KQARVAVADQQRAERISRPDYGSARPTKRDRRAMD 126 Query: 126 RFK 128 R K Sbjct: 127 RLK 129 >UniRef50_C5V1W3 RNA-binding S4 domain protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1W3_9PROT Length = 129 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 1/124 (0%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 ++R+DKWLWAARFYKTR+LA IE G+V +G R KP+K + + L G + + Sbjct: 7 KLRIDKWLWAARFYKTRSLALHAIENGRVLMDGVRVKPAKTIATGDHIVLHFGQAKFDIE 66 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V A++++R PA A LY E+ ES +R MA ++ + RP KK+RR++ +F Sbjct: 67 VLALSDKRGPAPVAHQLYRESDESAARRALMAEQHRMQP-EIAVFKYRPTKKDRREIEKF 125 Query: 128 KHGD 131 ++G+ Sbjct: 126 RNGE 129 >UniRef50_Q01Z85 RNA-binding S4 domain protein n=4 Tax=Bacteria RepID=Q01Z85_SOLUE Length = 135 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 75/128 (58%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ P VR+DKWLWAARF+KTR+LA + E G++ NGQ +K ++ V L +R Sbjct: 5 VENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLRVRNE 64 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V+V +++ R PA+ A LLY ET S E R K+A R++ + RP K++ Sbjct: 65 GGDFEVLVLGVSDMRGPAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRPSKRD 124 Query: 121 RRDLLRFK 128 RR + R + Sbjct: 125 RRVMGRLR 132 >UniRef50_Q2P648 Heat shock protein 15 homolog n=13 Tax=Xanthomonadaceae RepID=Q2P648_XANOM Length = 135 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 65/117 (55%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A VRLD WLWAARF+KTR+LA+ +E GKV GQR KPS+ + L + +G + Sbjct: 8 ATTVRLDVWLWAARFFKTRSLAKNAVETGKVDVAGQRPKPSRTLRSGEQLRIDRGGEIFE 67 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 + V A++ R A A LY E+ S E R + L R P+ +PDK+ RR Sbjct: 68 ITVAALSAVRGAAPVAQALYVESDSSREARAQWRLQRAAERTGYRAPEGKPDKRARR 124 >UniRef50_A6T2N5 Heat shock protein 15 n=3 Tax=Proteobacteria RepID=A6T2N5_JANMA Length = 126 Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 71/116 (61%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VRLDKWLWAARF+KTR+LA + ++ GKV +R KP++ V+ L + G+ V+V Sbjct: 6 VRLDKWLWAARFFKTRSLATDAVDKGKVRLEQERIKPARTVKCGDLLQIDNGSTVWEVVV 65 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 +A+++ R A A LY ET +S+++R++ A RK RP K++RR L Sbjct: 66 QALSDVRGSAEMAQKLYAETEQSLKQRQQDADQRKFFREPGLGIKGRPTKRDRRLL 121 >UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0H9_HALNC Length = 140 Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 3/124 (2%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS-KIVELNATLTLRQGNDERTV 66 E R+D WLWAARF+KTR+LA IEGGKV NGQ K S K V + L++ +G + V Sbjct: 16 EQRVDTWLWAARFFKTRSLASTAIEGGKVAINGQPCKKSGKAVRIGDELSIERGETKWIV 75 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 V +++QR A+ A LY E+ E + +R K A + N L +P R + R LLR Sbjct: 76 TVTGLSKQRGSATVAQTLYSESPEHLAERLKKAEQNRQNHLM--NPSRVKPDQHTRILLR 133 Query: 127 FKHG 130 G Sbjct: 134 ALRG 137 >UniRef50_C7I4L5 RNA-binding S4 domain protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I4L5_THIIN Length = 142 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 10/128 (7%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 RLDKWLWAAR+ KTRALA E G+V NG +KP+K V + L ++Q + R V V Sbjct: 19 RLDKWLWAARWCKTRALAASQCELGRVWVNGAPAKPAKEVRIGDVLVIQQERERREVEVL 78 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR----RPDKKERRDLL 125 + QR+ A A LY ET S +RE+ A R+L+ P P+ RP K +RR+L Sbjct: 79 QVGLQRQSAPLAQALYRETEASRLQRERQAELRRLS----PEPEAVRQGRPSKLDRRELQ 134 Query: 126 RF--KHGD 131 R H D Sbjct: 135 RMLDSHPD 142 >UniRef50_B1Y782 RNA-binding S4 domain protein n=5 Tax=Burkholderiales RepID=B1Y782_LEPCP Length = 153 Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 2/85 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND--ERTV 66 VRLDKWLWAARFYKTR+LA + I G+V N Q +K +++V L+++QGN R + Sbjct: 21 VRLDKWLWAARFYKTRSLAGDEIGHGRVMINQQLAKAARLVRCGDLLSVKQGNCPLPRII 80 Query: 67 IVKAITEQRRPASEAALLYEETAES 91 V A+++ R PA A LYEET ES Sbjct: 81 RVLALSDVRGPAPVARQLYEETEES 105 >UniRef50_B2UBP9 RNA-binding S4 domain protein n=11 Tax=cellular organisms RepID=B2UBP9_RALPJ Length = 132 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/114 (42%), Positives = 66/114 (57%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+DKWLWAARF+KTR+ A + +E G+V N Q +P+K V++ + + + V V Sbjct: 11 VRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVHAHEQQWEVEV 70 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 A+ E R PAS A LY ET S KRE+ A R+L RP K++RR Sbjct: 71 LALAEVRGPASVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTKRDRR 124 >UniRef50_Q31JR0 RNA-binding S4-domain protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JR0_THICR Length = 125 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 37/87 (42%), Positives = 54/87 (62%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+DKWLWAARF+KTR +A + ++GGKV NG + KPSK + L + Q + + V V Sbjct: 4 VRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVEVTV 63 Query: 69 KAITEQRRPASEAALLYEETAESVEKR 95 IT++R A A LY+ E + ++ Sbjct: 64 IGITDKRGSAEAAETLYQLDVEVLNQK 90 >UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaproteobacteria RepID=A4WST9_RHOS5 Length = 100 Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVI 67 +RLDKWL ARF+KTRALA ++E G+V NGQ +KP++ V LT QG R + Sbjct: 9 IRLDKWLVQARFFKTRALASALVEAGRVRLNGQHVAKPAQPVGEGDMLTFPQGGRIRLIR 68 Query: 68 VKAITEQRRPASEAALLYEE 87 V A+ +R PASEA LY++ Sbjct: 69 VVAVGVRRGPASEARGLYDD 88 >UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID=A3TX18_9RHOB Length = 130 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/134 (41%), Positives = 74/134 (55%), Gaps = 11/134 (8%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQ 59 M E+P + RLDKW+W ARF K+R+LA ++ GG V NG R +KPS V+ LT Q Sbjct: 1 MAEQP-TKFRLDKWIWQARFVKSRSLAAGLVTGGHVRVNGMRAAKPSHGVQPGDVLTFPQ 59 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 G+ R V + A +R PA+EA LYE+ + EK + AR + RP K+ Sbjct: 60 GDRIRVVRILAPAARRGPAAEAQALYEDMSPPEEKTQIPQGARN-------EGNSRPTKR 112 Query: 120 ERR--DLLRFKHGD 131 +RR DL R GD Sbjct: 113 DRRKLDLYRKGMGD 126 >UniRef50_A7HTT3 RNA-binding S4 domain protein n=10 Tax=Alphaproteobacteria RepID=A7HTT3_PARL1 Length = 131 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 R+D+WLW ARF K+R+LA +++ G++ +GQR SK S++V LT G R + + Sbjct: 11 RIDRWLWYARFLKSRSLAATLVQSGRLRLSGQRISKASRLVRAGDILTFPLGPHIRVIKI 70 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + +R PA EAALLYE+ K R+ A + P RP KKE R K Sbjct: 71 LHLGTRRGPAPEAALLYEDLDPPSPLPPKA--DRETAAESRPAGTGRPTKKEGRRTATLK 128 Query: 129 HG 130 G Sbjct: 129 SG 130 >UniRef50_Q2RYB5 RNA-binding S4 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB5_RHORT Length = 144 Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 R+DKWLW ARF KTR LA+ + G V G+ K + +V LTL G RTV+V Sbjct: 26 RIDKWLWYARFCKTRGLAQTLCAAGHVKREGESLVKAATLVRPGDRLTLVLGPLRRTVVV 85 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 +A +R PA EA LY+E E E++ + L+ P RP KK+RR L R++ Sbjct: 86 RAAGARRGPAPEARTLYDEP----EPAERLGDP-TMEGLSRPSGGGRPTKKDRRALDRWR 140 Query: 129 HGD 131 D Sbjct: 141 AED 143 >UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID=Q28M35_JANSC Length = 108 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 16/120 (13%) Query: 11 LDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIVK 69 +DKWLW ARF+KTR+LA + G V N + +K S + LT QGN R V + Sbjct: 1 MDKWLWQARFFKTRSLAARQVSAGHVRVNATKITKASTQISPGDVLTFPQGNTIRVVKID 60 Query: 70 AITEQRRPASEAALLY-EETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 A+ ++R PA EA LY + T E+ + ++ RP KK+RRDL F+ Sbjct: 61 ALAKRRGPAPEAQTLYIDMTPEAAPQSPRVG--------------PRPTKKDRRDLDAFR 106 >UniRef50_Q169A4 Heat shock protein, putative n=22 Tax=Rhodobacterales RepID=Q169A4_ROSDO Length = 125 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 A ++R+DKWLW RF+KTR+LA ++ G V NG R+ K S +V LT QG+D R Sbjct: 2 ADKLRIDKWLWHGRFFKTRSLAATVVASGAVRVNGTRTQKRSHMVVSGDVLTFPQGDDIR 61 Query: 65 TVIVKAITEQRRPASEAALLYEE 87 + V+A+ +R PA EA LY + Sbjct: 62 VIRVEALGTRRGPAPEARALYTD 84 >UniRef50_C9LEL6 Heat shock protein 15 n=5 Tax=Prevotella RepID=C9LEL6_9BACT Length = 152 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 E RLDKWLWAAR +KTR LA + + G+V NG ++KP++ V++ +++R+ T Sbjct: 4 EARLDKWLWAARIFKTRTLAADACKNGRVQINGAQAKPARSVKVGDRISVRKSPVTYTFR 63 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 +K+ E+R A +YE + E+ E + L++ + RP KK+RR L F Sbjct: 64 IKSAIEKRVGAKLLPDVYENIT-TPEQYELLELSKISGFVNRARGTGRPTKKDRRALDEF 122 >UniRef50_Q0BI23 RNA-binding S4 domain protein n=59 Tax=Betaproteobacteria RepID=Q0BI23_BURCM Length = 157 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 63/130 (48%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + +P +R+DKWLWAARF+KTR+LA + ++ G V G KP+K V + + + Sbjct: 27 ISTEPGARLRIDKWLWAARFFKTRSLASDAVDKGHVKIGGAAVKPAKDVRVGDEVEIAID 86 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V I + R PAS A LY ET R R+ RP K++ Sbjct: 87 GVVWHIAVLGICDVRGPASIAQTLYAETEAGRVARLAELERRRTYREPAAELHGRPTKRD 146 Query: 121 RRDLLRFKHG 130 RR + RF G Sbjct: 147 RRIIDRFSGG 156 >UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI2_RHOVA Length = 105 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTV 66 E RLDKWLW ARF K+R+LA ++IE G + N QR K + ++ LT D R + Sbjct: 6 EQRLDKWLWHARFVKSRSLAAKLIEEGCIRVNRQRVVKAATCIKCGDVLTASLFGDVRVI 65 Query: 67 IVKAITEQRRPASEAALLYEE 87 ++ I E+R P EAA LY E Sbjct: 66 EIRGIGERRGPPDEAAALYCE 86 >UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=A1B330_PARDP Length = 89 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQ 59 M ++ A +RLD+WL AR +KTR LA + I G + NGQ SKP++ V T+T+ Sbjct: 1 MSQEAAGAIRLDRWLHHARLFKTRTLAADAIGAGGIRVNGQPCSKPAQAVRGGDTVTVSA 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEE 87 R + V+ + E+R PASEAA LYEE Sbjct: 61 HGRVRVLRVRLLGERRGPASEAATLYEE 88 >UniRef50_B9XC61 RNA-binding S4 domain protein n=2 Tax=Verrucomicrobia RepID=B9XC61_9BACT Length = 125 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/118 (36%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+DKWLWA R +KTR+LA G V G KP++ V +N + R G+ RTV V Sbjct: 7 VRIDKWLWAVRLFKTRSLAMAACRSGHVRVGGHPVKPAREVRINDVIEARTGDITRTVKV 66 Query: 69 KAITEQRRPASEAALLYEET--AESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + QR A E+ A EKR+++ L P RP KK+RR + Sbjct: 67 LGLLHQRVGAQAVKEHAEDLTPASEYEKRKELVLE---PMFYRPKGTGRPTKKDRRSM 121 >UniRef50_B4WYP3 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WYP3_9GAMM Length = 431 Score = 65.9 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 44/64 (68%) Query: 31 IEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAE 90 +EGGK+H +G R+KPSK V+ T+T+ +G + VIV+ ++ +R PA A LYEET E Sbjct: 1 MEGGKIHIDGSRTKPSKAVQPGQTVTITKGTEHFEVIVRDLSSKRGPAKVAQTLYEETPE 60 Query: 91 SVEK 94 SV K Sbjct: 61 SVAK 64 >UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEU6_9RHIZ Length = 134 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 71/122 (58%), Gaps = 4/122 (3%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 R+D+WLW AR K+R LA+++I GKV N ++ KPS +V+ +TL G R++ + Sbjct: 11 RVDQWLWFARITKSRTLAQDLISRGKVRLNREKIDKPSTLVKPGDVITLVVGPAVRSLEI 70 Query: 69 KAITEQRRPASEA-ALLYEETAESV-EKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 I +R PA+EA +L + T V + ++A+ K +A+ P RP K++RR + + Sbjct: 71 VGIGHRRGPATEAQSLFLDHTPPKVRPEAAEIAMQPKQSAV-RPEGSGRPTKRDRRQIDK 129 Query: 127 FK 128 K Sbjct: 130 LK 131 >UniRef50_UPI000050FC77 heat shock protein Hsp15 n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC77 Length = 138 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 P VR+D WLW R +KTR LA + GG V GQR K ++ V + + +R+ E Sbjct: 7 PGKHVRVDVWLWTTRMFKTRNLATQACRGGHVQVEGQRVKAAQKVSIGQEVRVRKAGTEF 66 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + R AS AA YE+ + + + R+ + RP KK+RR++ Sbjct: 67 IWKITGFIPTRPQASIAAQCYEDLTPPPDPALRGFVPRRDKGMG------RPTKKDRREM 120 Query: 125 LRF 127 +F Sbjct: 121 EKF 123 >UniRef50_C5C3U9 RNA-binding S4 domain protein n=12 Tax=Actinomycetales RepID=C5C3U9_BEUC1 Length = 122 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 VR+D WLWA R K+R+ A G V NG+R+KP+ V + ++ +R G+ ER + Sbjct: 4 SVRVDAWLWAVRILKSRSAASTACRAGHVQINGERAKPASPVRVGDSVRVRGGHAERVLE 63 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V+ + +R A A Y + + RE R A+ P RP K+ERR L R Sbjct: 64 VRRLIVKRVGAPVAVECYVDHSPPPPPRE----IRIQVAIRDPGTG-RPTKRERRQLDRL 118 Query: 128 K 128 + Sbjct: 119 R 119 >UniRef50_D1W8V5 S4 domain protein n=2 Tax=Prevotella RepID=D1W8V5_9BACT Length = 159 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+DKWLWAAR +KTR LA + + +V NG KPS +++ T+ +++ + V Sbjct: 20 RIDKWLWAARIFKTRTLAADACKNNRVSVNGVNVKPSHVIKPGETIDVKKPPITYSFKVI 79 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 EQR A +YE ++ ++ E + ++R + RP KK+RR + F Sbjct: 80 KTIEQRVGAKFIPQIYENVTDA-KQYELLEMSRISGFVDRARGTGRPTKKDRRSMDAF 136 >UniRef50_A6G6M5 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G6M5_9DELT Length = 124 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 7/121 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+DKWLWAAR +KTR+ A G V +G+ K SK V+ + + R + V Sbjct: 8 VRIDKWLWAARMFKTRSSASTACSAGHVKIDGESVKASKGVKPGDRIDVLTPGGPRELEV 67 Query: 69 KAITEQRRPASEAALLY-EETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 A+ E+R PAS A LY + T K E++ +A + RP KKE R+L + Sbjct: 68 VALGERRGPASVARTLYVDHTPAPPPKEERVVVAERERGAG------RPKKKELRELRKL 121 Query: 128 K 128 + Sbjct: 122 R 122 >UniRef50_C7PRL2 RNA-binding S4 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRL2_CHIPD Length = 141 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K K +VRLDK+LW+ R +K+R+LA E G+V NG K ++ V LN +R Sbjct: 10 KMKEVEKVRLDKYLWSIRIFKSRSLASAGCEAGRVKMNGVTVKAARNVALNDVYEIRTEG 69 Query: 62 DERTVIVKAITEQRRPASEAALLYEE-TAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + + V A+ R +EA Y + T E + +E+ A P RP KKE Sbjct: 70 RKWVIQVTALLANRVQYTEAIKFYNDITPEEDKAQERQASV--FQTGKRPSKIGRPTKKE 127 Query: 121 RRDLLRFKHGDSE 133 RR+L F G+ + Sbjct: 128 RRELDDFMGGEED 140 >UniRef50_C6Y288 RNA-binding S4 domain protein n=4 Tax=Sphingobacteriaceae RepID=C6Y288_PEDHD Length = 132 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 7/118 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LWA R +KTR+LA E + G+V + GQ KPS IV+ + +G +++ + V Sbjct: 7 LRIDKYLWAIRLFKTRSLATEACKAGRVKFKGQNLKPSAIVKPGDVYQVSKGIEKKMIEV 66 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR---RPDKKERRD 123 + R A A Y++ VE E A +A T+ DR RP KK+RR+ Sbjct: 67 VELLYNRVEAKIAVTKYKDVT-PVE--ETHAFKSMFHAPTLKR-DRGTGRPTKKDRRE 120 >UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IUH9_RHOCS Length = 115 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVI 67 +RLDKWLW ARF KTR LA + G + G +K V+ LT G R + Sbjct: 23 LRLDKWLWYARFVKTRGLAARLCASGAIRIGGAHVTKAHHRVKPGDVLTFPLGPHIRVIR 82 Query: 68 VKAITEQRRPASEAALLYEE 87 V+A+ +R PA EA LYE+ Sbjct: 83 VRALAARRGPAPEARTLYED 102 >UniRef50_Q0S6G3 Ribosome-associated heat shock protein n=7 Tax=Actinomycetales RepID=Q0S6G3_RHOSR Length = 144 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 13/125 (10%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV- 66 VR+D W WA R +KTR+ A G V NG +KP++ V+ + +R ER V Sbjct: 27 SVRVDSWTWATRLFKTRSAAAAACRSGHVRVNGTTAKPAQPVKAGDEVRVRAAGVERIVE 86 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR---RPDKKERRD 123 +V+ IT +R A A Y + RE +A ++P DR RP K+ERR+ Sbjct: 87 VVRPIT-KRVGAVVAVECYTDNTPPPPPREVLA--------SIPQRDRGAGRPTKRERRE 137 Query: 124 LLRFK 128 + R + Sbjct: 138 MDRLR 142 >UniRef50_D0L3C9 RNA-binding S4 domain protein n=31 Tax=Bacteria RepID=D0L3C9_GORB4 Length = 293 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 11/127 (8%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 + R+D W+WA R KTR+ A GG V NG +KP++ V + +R ER V Sbjct: 1 MSTRVDAWIWAIRLTKTRSAAGAACRGGHVRVNGATAKPAQPVVPGDEVRVRLSGRERVV 60 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR---RPDKKERRD 123 V +R A AA Y + + RE +A + P DR RP K+ERR Sbjct: 61 EVTKTISKRVSAPMAAECYIDRSPPPPPREVVA--------SQPRRDRGAGRPTKRERRQ 112 Query: 124 LLRFKHG 130 L + + G Sbjct: 113 LDQLRGG 119 >UniRef50_C5VMC9 Heat shock protein 15 n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VMC9_9BACT Length = 140 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+DKWLWAAR YKTR++A + + G+V G KPS ++ +++++ + V Sbjct: 6 RIDKWLWAARIYKTRSIAADACKNGRVTIKGINVKPSHTIKAGEVVSVKKSPIIYSFKVL 65 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 EQR A +YE ++ ++ E + ++R + RP KK+RR + F Sbjct: 66 KPIEQRVGAKLIPEVYENVTDA-KQYELLEMSRISGFVDRARGTGRPTKKDRRQMDAF 122 >UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=B1LWX7_METRJ Length = 102 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLDKWLW ARF +TR+LA + G V NG R++ P+K + + +T+ + V V Sbjct: 7 RLDKWLWFARFARTRSLAARLASDGFVRVNGSRAENPAKAIGVGDVVTVAAPHATLAVRV 66 Query: 69 KAITEQRRPASEAALLYEE 87 + +R PA EA LLY++ Sbjct: 67 LGLGLRRGPAPEARLLYDD 85 >UniRef50_Q7MXL0 Heat shock protein 15 n=32 Tax=Bacteroidales RepID=Q7MXL0_PORGI Length = 145 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 1/122 (0%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 EVR+D+W+WA R +KTR +A + + +V NG ++KPS++V + + +R+ + Sbjct: 3 EVRIDRWMWATRIFKTRTIATDACKKSRVTVNGLQAKPSRMVRVGDVIQVRKPPVTYSFR 62 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 + A+ Q R ++ + E E+ E + + R + RP KK+RR+L +F Sbjct: 63 ILALA-QNRMGAKLVKDFLENITPPEEYEILEMQRISGFVDRAKGTGRPTKKDRRELEQF 121 Query: 128 KH 129 Sbjct: 122 SE 123 >UniRef50_B5JNJ8 S4 domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNJ8_9BACT Length = 157 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 8/126 (6%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+D+WLWA R +KTR A E GGKV +G+ KPS++V + + + + R V Sbjct: 37 VRIDRWLWAVRIFKTRGDAVEACRGGKVEIDGENVKPSRMVRIGEKVDVMKDGVLREFRV 96 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPD---RRPDKKERRDLL 125 + +R A A ++ E++ + R+ A T+ + RP K+ERRD+ Sbjct: 97 VGLLMKRVGAKVVAAYVQDLTPP----ERLEVRRETLAQTILKREAGAGRPTKRERRDIE 152 Query: 126 RFKHGD 131 R GD Sbjct: 153 RL-FGD 157 >UniRef50_A0K0Y7 RNA-binding S4 domain protein n=12 Tax=Actinobacteria (class) RepID=A0K0Y7_ARTS2 Length = 127 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 13/131 (9%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + PA VR+D WLWA R YKTR+ A G V NG +K S+ + T+ +RQ Sbjct: 4 LPSAPAT-VRIDAWLWAIRAYKTRSAATAACRAGHVRLNGNPAKASQSLVPGDTVRVRQP 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR---RPD 117 ER + V+ + +R A AA + + +A AL +P DR RP Sbjct: 63 GYERILEVRRLIAKRVGAEAAAHCFTDHTPP----RPVA-----PALGLPQRDRGTGRPT 113 Query: 118 KKERRDLLRFK 128 KK+RR++ R + Sbjct: 114 KKDRREMERLR 124 >UniRef50_C7LE02 S4 domain protein n=38 Tax=Rhizobiales RepID=C7LE02_BRUMC Length = 137 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 13/133 (9%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKI-VELNATLTLRQ 59 M + A R+DKWL+ AR K+R+LA ++ GGKV N + + + V++ LT+ Sbjct: 14 MAAEKAARQRIDKWLFFARVVKSRSLAAKLAVGGKVRVNRDKIEQAAYQVKVGDVLTITL 73 Query: 60 GNDERTVIVKAIT--EQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPD 117 D R ++ K + E+R PA EA LLYE+ + S + A R+ A RP Sbjct: 74 --DRRILVYKVLAPGERRGPAPEAQLLYEDLSPSPAASTETA-QRESGA-------GRPT 123 Query: 118 KKERRDLLRFKHG 130 KKERR++ R + G Sbjct: 124 KKERRNIDRLREG 136 >UniRef50_A3UGK9 S4 domain protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UGK9_9RHOB Length = 94 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHY--NGQ---RSKPSKIVELNATLTLRQGND 62 +R D WL+ AR YK+R LA +MIE G V NGQ +KP+ V L +R+ D Sbjct: 7 SMRCDVWLFRARLYKSRGLAGQMIEKGAVRIDRNGQVTRLTKPAAPVRPGDCLVIRRDAD 66 Query: 63 ERTVIVKAITEQRRPASEAALLYE 86 + V+A+ E+R PA EA Y Sbjct: 67 PLRLTVRALPERRGPAPEAQSCYS 90 >UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiales RepID=B8ERF0_METSB Length = 104 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 RLDKWLW AR KTR LA ++ G V N +R P+K V LT+ R + V Sbjct: 6 RLDKWLWFARVTKTRTLAARLVLDGHVRLNARRIDAPAKPVAAGDVLTVALERQVRVLRV 65 Query: 69 KAITEQRRPASEAALLYEETAESV 92 +R P EA LL+EE +ESV Sbjct: 66 LQPGARRGPFPEARLLFEELSESV 89 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 13/131 (9%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 PA RLDKWL+ AR K+R+LA++ IE G V NG+R S ++ A L + R Sbjct: 9 PATRQRLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSS-AQIKAGDMLEVSLERR 67 Query: 65 TVIVKAI--TEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR---RPDKK 119 ++++ + +R P EA LLYE+ + A A K DR RP K+ Sbjct: 68 DLVLRVLLPGSRRGPYEEARLLYEDLTPA-------APAGKPTLYEQATRDRGAGRPTKR 120 Query: 120 ERRDLLRFKHG 130 ERR+ R + G Sbjct: 121 ERRETDRLRPG 131 >UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales RepID=A0QXX1_MYCS2 Length = 127 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 16/126 (12%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D+WLWA R KTR A GG V N + +KPS V + R G+ R V V Sbjct: 11 RIDRWLWAVRLTKTRPDAAAACRGGHVRVNDRVAKPSTTVAPGDEVRARLGDRTRIVEVV 70 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDR-----RPDKKERRDL 124 + ++R A++A Y + + ++ A+T+P R RP K++RR L Sbjct: 71 RVIQKRVGAADAVTCYLDRSPALPP-----------AVTVPVAVRDRGAGRPTKRDRRLL 119 Query: 125 LRFKHG 130 +++ G Sbjct: 120 DKWRSG 125 >UniRef50_Q0AMA8 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=Q0AMA8_MARMM Length = 109 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 7/83 (8%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNG-----QRSKPSKIVELNATLTL-RQGND 62 +R+D WLW AR +KTR+LA +++ G++ + SKPS +V TLTL R G Sbjct: 8 IRIDVWLWQARQFKTRSLATAIVQKGRLRITSGGLTRKISKPSTLVRAGDTLTLPRNGGI 67 Query: 63 ERTVIVKAITEQRRPASEAALLY 85 R I+ A+ +R PASEA LY Sbjct: 68 VRLEIL-ALGTRRGPASEAQALY 89 >UniRef50_Q47PE2 RNA-binding S4 n=1 Tax=Thermobifida fusca YX RepID=Q47PE2_THEFY Length = 147 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 6/119 (5%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D+WLWA R KTR+ A + G V N + +KP+ V++ + R R V V Sbjct: 31 RVDRWLWAVRLTKTRSDAAQACRAGHVRVNDKPAKPATSVKVGDRVRARVNGVTRIVEVT 90 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 I E+R A A Y + V + +AR+ P RP K+ERR L R + Sbjct: 91 HIIEKRVGAPIATRCYIDHTPVVPPELAVPVARR------PRGAGRPTKRERRQLDRLR 143 >UniRef50_B6R6S6 RNA-binding S4 n=3 Tax=Alphaproteobacteria RepID=B6R6S6_9RHOB Length = 133 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSK-IVELNATLTLRQGNDE 63 P +R+DKWLW AR K+R LA+++ G V N ++ +K V+ LT+ Sbjct: 6 PQGSIRIDKWLWYARITKSRTLAQKLAVSGHVRLNKEKVSAAKAAVKPGDVLTITM--PR 63 Query: 64 RTVIVKA--ITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 R +I+K + +R PA EA +LYE+ + +E A + A RP KK+R Sbjct: 64 RLLILKVLKLGTRRGPAPEAQMLYEDMSPPPPPKETQAPVAQREAGA-----GRPTKKDR 118 Query: 122 RDLLRFK 128 R + R + Sbjct: 119 RQIARIR 125 >UniRef50_C0BJS5 RNA-binding S4 domain protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJS5_9BACT Length = 130 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D++LW R +K+R LA + + G+V NGQ+ KPS+ + + + +R+ RT V Sbjct: 1 MRVDQYLWCIRLFKSRNLASTICKKGQVKVNGQKVKPSREILPHDQIEVRKDQLWRTFEV 60 Query: 69 KAITEQRR-PASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 I + R P A + E+T SV E L ++ RP KK+RRDL Sbjct: 61 LDIPKSRMGPKLVALYVIEKTDPSV--FENQELQNLTGSIRREEGTGRPTKKDRRDL 115 >UniRef50_B0SXM9 RNA-binding S4 domain protein n=1 Tax=Caulobacter sp. K31 RepID=B0SXM9_CAUSK Length = 99 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYN--GQRS---KPSKIVELNATLTLRQGNDE 63 R D WLW ARF+KTR+LA +E G++ G S KPS+ + L L G Sbjct: 13 CRADVWLWRARFFKTRSLAGRFVEEGRIRLTRAGAESRVDKPSRGLRLGDGLVFAIGGRI 72 Query: 64 RTVIVKAITEQRRPASEAALLYE 86 V V + E+R PA+EA LYE Sbjct: 73 VAVRVVGLGERRGPATEARELYE 95 >UniRef50_B4RFP2 Ribosome-associated heat shock protein n=6 Tax=Caulobacteraceae RepID=B4RFP2_PHEZH Length = 101 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 5/86 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVH-----YNGQRSKPSKIVELNATLTLRQGNDE 63 R D WLW ARF+KTR+LA + ++ G+V + + KP++ V++ L G Sbjct: 7 CRADVWLWRARFFKTRSLAAKFVDEGRVRLTRLGHETRLDKPARPVKVGDQLVFALGGRL 66 Query: 64 RTVIVKAITEQRRPASEAALLYEETA 89 V V+A+ E+R P +EA LY A Sbjct: 67 IAVTVEAMGERRGPPAEARTLYSTLA 92 >UniRef50_UPI000174635B protein containing RNA-binding S4 domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174635B Length = 125 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R D +L R +KTR+LA + G V GQ KP++ ++L L +++G+ V V Sbjct: 1 MRADLYLHHVRIFKTRSLATQACTRGLVQIGGQPMKPARELKLGEVLDIQRGDLSLVVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP-DRRPDKKERR 122 A R AS L E+ V+ +K A AR+ L PH +PDKK+ R Sbjct: 61 IAFPTTRVGASLVKLFMEDLT-PVQNYQKAAEARREKVLLTPHALAAKPDKKQLR 114 >UniRef50_C2MAE5 Heat shock protein 15 n=8 Tax=Bacteria RepID=C2MAE5_9PORP Length = 166 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 3/120 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+D +LWA R +KTR++A++ G+V N +KP+K+V + +++R+ T+ Sbjct: 5 VRIDSFLWAVRLFKTRSIAQDACRKGRVAINDVTAKPAKMVMMGDIISVRKP--PVTLSF 62 Query: 69 KAI-TEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 K + T R ++ Y E+ E + L R + RP K+ERRDL +F Sbjct: 63 KVLQTTANRMGAKLVPEYILNVTPPEQYELLELKRMSGYVDRAQGLGRPTKRERRDLEQF 122 >UniRef50_A3VNF6 S4 domain protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VNF6_9PROT Length = 110 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 5/89 (5%) Query: 8 EVRLDKWLWAARFYKTRALAREMI--EGGKVHYNG---QRSKPSKIVELNATLTLRQGND 62 +RLD+WLW AR +KTRALA ++ +G +V G + +KPS + TL + Q Sbjct: 10 SLRLDRWLWHARIFKTRALAARIVSQKGARVTRAGKTQKTTKPSFAIRPGDTLAIVQAQR 69 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAES 91 + V A+ ++R PA EA LY + +S Sbjct: 70 AIILEVVALGDRRGPAREAQTLYRISDDS 98 >UniRef50_D2NQJ7 Ribosome-associated heat shock protein n=6 Tax=Actinomycetales RepID=D2NQJ7_9MICC Length = 130 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 17/121 (14%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 RLD WLW+ R +KTR+LA + +GG V N +KPS+ ++ + +R ER V+ Sbjct: 13 RLDLWLWSVRIFKTRSLAADECKGGHVRVNDAPAKPSQKLKKGDIVKVRYPGWERVFKVE 72 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMP------HPDRRPDKKERRD 123 + +R A A YE+ + + L+MP RP KKERR Sbjct: 73 KLLVKRVGAPIAVTCYEDLS-----------GPRPAYLSMPPVAKRERGSGRPTKKERRA 121 Query: 124 L 124 L Sbjct: 122 L 122 >UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis RepID=Q1GPH7_SPHAL Length = 116 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDER 64 A +RLDK LW RF ++R++A+ M+ G + +G+R S+ S V+ ATL L G Sbjct: 7 AGSIRLDKLLWFLRFARSRSIAQAMVAAGHIRLDGRRVSRSSCAVQAGATLVLPVGERIE 66 Query: 65 TVIVKAITEQRRPASEAALLY 85 + + ++ +R PA+EA Y Sbjct: 67 VIRLVSLPLRRGPATEAQACY 87 >UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ Length = 98 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIV 68 RLDK+L+ ARF KTR +A ++ G V N Q + KP + LTL + V V Sbjct: 16 RLDKFLFHARFVKTRGVAARLVAAGGVRINRQITEKPHARLRPGDVLTLALPQGVQVVRV 75 Query: 69 KAITEQRRPASEAALLYEETAE 90 A+ +R PA+EA LYE AE Sbjct: 76 VALGARRGPAAEARRLYEVVAE 97 >UniRef50_C6X0Q5 Ribosome-associated heat shock protein n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Q5_FLAB3 Length = 149 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW RFYKTR++A I+ ++ +K SK V L + +R+ + + V Sbjct: 1 MRIDKFLWCVRFYKTRSIAAAEIKKNRISVGNNVAKSSKEVTLGDVIKIRKNQIDYQIKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNA-LTMPHPDRRPDKKERRDLLRF 127 I + R L E+ + E+ E + L R LN + RP KK+RR + F Sbjct: 61 LQIPKSRMGPKLVPLHIEDKTDK-EQYEILKL-RNLNQDYYRNRGEGRPTKKDRRSMDDF 118 Query: 128 KHGDS 132 GD Sbjct: 119 IDGDG 123 >UniRef50_Q6AE36 Ribosome-associated heat shock protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AE36_LEIXX Length = 118 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 VR+D W WA R +KTR+ A + + G + NG R+KP++ V++ + G E+ I Sbjct: 11 SVRVDSWTWAVRLFKTRSSASDACKAGHLKVNGDRAKPAQPVKVGDEIRALAGGSEKVYI 70 Query: 68 VKAITEQR 75 + + +R Sbjct: 71 ARRLIVKR 78 >UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9N3_9SPHN Length = 85 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 +R+D+ L RF +TR+ AR++++ G + NG+R +PS+ + + LTL G + + Sbjct: 1 MRIDRLLCTLRFVRTRSAARKLVDQGHIRRNGERVLRPSRDIAVGDVLTLPVGRHVKLIE 60 Query: 68 VKAITEQRRPASEAALLYEE 87 V + E+R P EA Y E Sbjct: 61 VLQLPERRGPPREAQECYRE 80 >UniRef50_Q0BWQ4 S4 domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BWQ4_HYPNA Length = 95 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 5/82 (6%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYN--GQ---RSKPSKIVELNATLTLRQGNDE 63 +RLD WLW ARF+KTRALA + G V + GQ KP V + +T + Sbjct: 7 LRLDIWLWRARFFKTRALATAHVRGRGVRLSHLGQTRKTDKPGASVNVGDVVTFGKAERI 66 Query: 64 RTVIVKAITEQRRPASEAALLY 85 +V V + E+R PA EA LY Sbjct: 67 YSVEVLDLGERRGPAEEARALY 88 >UniRef50_C8WQS2 RNA-binding S4 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQS2_ALIAD Length = 100 Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+++ + G+V NG+ K + V + + ++ GN TV+V Sbjct: 1 MRLDKFLKVSRLIKRRTLAKKICDAGRVLVNGRPGKAATDVAVGDEIVIQYGNKTVTVVV 60 Query: 69 KAITEQRRPASEAALLYE 86 + + E R EAA LY+ Sbjct: 61 RRLAENPR-RDEAASLYD 77 >UniRef50_C0YT05 Heat shock protein 15 n=2 Tax=Flavobacteriaceae RepID=C0YT05_9FLAO Length = 145 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW+ RFYKTR++A E I+ +V K SK V+ T+ +R+ + + V Sbjct: 1 MRIDKFLWSIRFYKTRSIAAEEIKKNRVSIGTSAVKSSKEVKEGDTIKIRKNQIDYKIKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 I + R A L ++ + E+ E + L + + RP KK+RR++ + Sbjct: 61 IQIPKSRIGAKLVPLHIQDVTDK-EQYELLKLRKMSQDYYRNKGEGRPTKKDRREMDEYV 119 Query: 129 HGD 131 D Sbjct: 120 GND 122 >UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4_NITWN Length = 97 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 RLDKWLW AR + R A ++E G+V NG R + P + + LT+R R + + Sbjct: 8 RLDKWLWHARVVRARTQAASLVEAGRVRVNGLRQTSPGHPLRIADVLTIRLDRGIRILRI 67 Query: 69 KAITEQRRPASEAALLYEETAES 91 E+R + A LY++ + + Sbjct: 68 TGFAERRGGPTVARALYDDLSNA 90 >UniRef50_A8RA49 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RA49_9FIRM Length = 94 Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L AR K R++++E+ + +V+ NG+ +KP+ V++ + + G E TV V Sbjct: 1 MRLDKYLKTARILKRRSVSKELADNERVYVNGRVAKPATDVKIGDIVKVIFGYRELTVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMA 99 A+ +Q ++AAL++E E + K++ + Sbjct: 61 LALPKQVNK-NDAALMFEVVEEKLIKKDSLV 90 >UniRef50_Q9KGI8 Uncharacterized protein BH0073 n=176 Tax=Firmicutes RepID=Y073_BACHD Length = 88 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ E G++ NG +K +V+ L +R G TV + Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVCEQGRITVNGNVAKAGTVVKEGDELVIRFGQKLVTVEI 60 Query: 69 KAITEQRRPASEAALLYE 86 + E R EA+ LYE Sbjct: 61 TNVKETVRK-EEASTLYE 77 >UniRef50_B0MVH7 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVH7_9BACT Length = 132 Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+LWA R +KTR+ A E I +V N +KPS+ V + + +++ V Sbjct: 4 IRLDKYLWAVRIFKTRSDAAEAIRQNRVLVNDAYAKPSREVRIGDRIAVKRMPVTYLFEV 63 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 R+PA Y + +K+ + R+ + RP KKERR+L Sbjct: 64 VGYVSSRQPAKNVP-DYCRNITPQSELDKLNIPRETVFVFRDRGTGRPTKKERREL 118 >UniRef50_A3DIS8 RNA-binding S4 n=7 Tax=Clostridiales RepID=A3DIS8_CLOTH Length = 79 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R LA E E G+V NG+ +KP V++ + +R GN V V Sbjct: 1 MRIDKYLKVSRLIKRRTLANEACEQGRVLINGKVAKPGTEVKVGDIIEIRFGNSTTKVEV 60 Query: 69 KAITEQ 74 AI E Sbjct: 61 TAINEH 66 >UniRef50_Q11CX7 RNA-binding S4 n=1 Tax=Chelativorans sp. BNC1 RepID=Q11CX7_MESSB Length = 95 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 52/85 (61%), Gaps = 5/85 (5%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 R+DKWL+ AR K+R+LA ++ + G+V N ++ ++ S++V LT+ D R ++ Sbjct: 8 RIDKWLFFARVVKSRSLAAKLAQAGRVRVNREKINEASQLVRPGDVLTITL--DRRILVY 65 Query: 69 KAITE--QRRPASEAALLYEETAES 91 + + +R PA EA LLYE+ ++ Sbjct: 66 RVLAPGLRRGPAEEARLLYEDLTQT 90 >UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N6H3_ERYLH Length = 103 Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVI 67 +R+D L RF+KTR+ AR +IE G + NG+R + S V LT+ G + Sbjct: 1 MRIDLVLCRLRFFKTRSAARNLIEAGHLRANGRRVVQVSHPVAEGDILTVPLGKSVVVIE 60 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALA 101 + + E+R PA+EA E +++ RE+ ALA Sbjct: 61 ILHLPERRGPAAEA----RECYRALDPREQSALA 90 >UniRef50_A0M418 Protein containing RNA-binding S4 domain n=18 Tax=Bacteroidetes RepID=A0M418_GRAFK Length = 139 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 1/116 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW R++KTR++A + GKV + KPSK V L +R+ + + Sbjct: 1 MRVDKFLWCVRYFKTRSIATNACKQGKVRLEDEILKPSKDVFPGDKLRVRKNQINYEIEI 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + + R ++ LY E EK+ L + RP KK+RRD+ Sbjct: 61 LDLPKS-RVGAKLVNLYLHDITPKEAFEKLELLKYSKDYYRKKGTGRPTKKDRRDI 115 >UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q2GC52_NOVAD Length = 96 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVI 67 +R+DK+LW RF TR LA+ +E G + NG+R + S V L L L + + Sbjct: 1 MRIDKFLWFTRFAGTRNLAQGWVEDGHIRLNGRRIERCSADVRLGDVLVLPMRSRVTVIE 60 Query: 68 VKAITEQRRPASEAALLY 85 V A+ +R PA EA Y Sbjct: 61 VLALPARRGPAPEAQACY 78 >UniRef50_B8FZC2 RNA-binding S4 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FZC2_DESHD Length = 90 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R +A+++ EG K+ NG+ +KPS V+ +TL V V Sbjct: 1 MRIDKYLKVSRLIKRRTVAKDICEGEKIRLNGRIAKPSAEVKPGDIVTLEMARHLLEVRV 60 Query: 69 KAITEQRRPASEAALLYE 86 + T A+EA LLYE Sbjct: 61 LS-TPNSAKANEAHLLYE 77 >UniRef50_P37557 Uncharacterized protein yabO n=25 Tax=Bacteria RepID=YABO_BACSU Length = 86 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ + G++ NG ++K S V+ LT+R G TV V Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRFGQKLVTVQV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMA 99 + + + EAA +Y ++ K EK+ Sbjct: 61 NELKDTTKK-EEAANMY-----TILKEEKLG 85 >UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G1N8_9RHIZ Length = 161 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIV 68 R+DKWL AR KTR++A++++E KV N ++ P++ V + LT+ + V Sbjct: 23 RIDKWLVFARVVKTRSIAQQLVEAKKVRLNKEKIDNPARNVRVGDVLTISYSSRVHVFQV 82 Query: 69 KAITEQRRPASEAALLYEE 87 +R +A LYE+ Sbjct: 83 LGFAGRRGSPGDAQALYED 101 >UniRef50_P64406 Uncharacterized protein spr0007 n=42 Tax=Bacteria RepID=Y007_STRR6 Length = 88 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 3/84 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + G++ NG +K S +++N + +R GN + ++V Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGN--KLLLV 58 Query: 69 KAITEQRRPASE-AALLYEETAES 91 K + + E AA +YE +E+ Sbjct: 59 KVLEMKDSTKKEDAAGMYEIISET 82 >UniRef50_A9NE18 S4 RNA-binding domain protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE18_ACHLI Length = 82 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 40/64 (62%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R++A+++ + +++ NGQ +KP K V++ + L G T+ + Sbjct: 1 MRIDKFLKVSRLIKRRSVAKDVADADRIYVNGQLAKPGKTVKVGDQVQLHLGLKIITIEI 60 Query: 69 KAIT 72 ++T Sbjct: 61 TSLT 64 >UniRef50_Q03N19 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=84 Tax=Firmicutes RepID=Q03N19_STRTD Length = 91 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + G++ NG +K S +++ + +R GN TV V Sbjct: 1 MRLDKYLKVSRIIKRRPVAKEVADKGRIKVNGVLAKSSTDLKIGDQVEVRFGNKLLTVRV 60 Query: 69 KAITEQRRPASEAALLYEETAES 91 + + + +AA +YE +E+ Sbjct: 61 LEMKDSTKK-EDAAKMYEIISET 82 >UniRef50_C8P218 S4 domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P218_ERYRH Length = 90 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 32/50 (64%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 +RLDK+L +R K R +A+E+ + +V NG+++KPS V L + +R Sbjct: 1 MRLDKYLKVSRIIKRRTVAKELADDDRVFINGKKAKPSSEVSLEDEIEIR 50 >UniRef50_Q9ZIM1 Uncharacterized protein Lmo0216 n=117 Tax=Bacteria RepID=Y216_LISMO Length = 88 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 +RLDK+L +R K R +A+E+ E G++ NG +KP V+ L +R G Sbjct: 1 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRFG 52 >UniRef50_C5RJP4 RNA-binding S4 domain protein n=2 Tax=Clostridium RepID=C5RJP4_CLOCL Length = 92 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +RLDK+L +R K R +A+E E G+V NG+ +KPS V+ + + + N Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEACESGRVIINGKVAKPSSEVKEDDVIEILYAN 53 >UniRef50_Q9ZJJ0 Uncharacterized protein jhp_1318 n=14 Tax=Helicobacter RepID=YE23_HELPJ Length = 84 Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR--QGNDERTV 66 +R+DK+L + K R LA +M G V NG +KPSK V+ ++L +G +E T+ Sbjct: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKPSKEVKTGDVISLHYLKGIEEYTI 60 Query: 67 I 67 + Sbjct: 61 L 61 >UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepID=D1J7L7_MYCHP Length = 199 Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDER 64 VE RLD ++ A F +TRA AR+++ G +G ++ PS IV++ + + L++ Sbjct: 91 TVESRLDNLVFRAGFARTRAQARQLVNHGHFTVDGCKANIPSMIVKVGSVIELKEALQNN 150 Query: 65 TVIVKAI 71 I AI Sbjct: 151 VAIKDAI 157 >UniRef50_A6QAM8 RNA-binding S4 protein n=6 Tax=Epsilonproteobacteria RepID=A6QAM8_SULNB Length = 81 Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 31/49 (63%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 +R+DKWL A K R +A +M++ G V+ N ++K SK +++ +T+ Sbjct: 1 MRVDKWLSAVNVVKRRTIATDMLKSGVVYVNSMKAKASKDLKVGDKVTI 49 >UniRef50_D1B612 RNA-binding S4 domain protein n=2 Tax=Synergistaceae RepID=D1B612_THEAS Length = 89 Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L AR K R +A+EM E G V +G+ +KPS E+ A L R + V Sbjct: 1 MRVDKFLKLARIVKRRTVAQEMAEAGAVRVSGRVAKPS--TEVRAGDQLEVDFPSRFLRV 58 Query: 69 KAIT 72 K +T Sbjct: 59 KVLT 62 >UniRef50_C9RA17 RNA-binding S4 domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RA17_AMMDK Length = 81 Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L AR R +A + + G V NG+ +KP+ V+ +TL G + V Sbjct: 1 MRIDKFLKEARLITRRTVANQALREGLVTINGRTAKPATRVKKGDIITLNLGGKLLRLEV 60 Query: 69 KAITEQRRPASEAALLY 85 A+ RR E A LY Sbjct: 61 LAVEVPRRRRGEEAALY 77 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACH0 Heat shock protein 15 n=250 Tax=cellular organis... 176 2e-43 UniRef50_D0FX09 Heat shock protein 15 n=2 Tax=Erwinia pyrifoliae... 169 2e-41 UniRef50_Q7MQ01 Ribosome-associated heat shock protein n=3 Tax=G... 161 7e-39 UniRef50_B4F027 Heat shock protein 15 n=3 Tax=Proteus RepID=B4F0... 159 3e-38 UniRef50_C6WVI1 RNA-binding S4 domain protein n=1 Tax=Methyloten... 157 8e-38 UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=2... 157 1e-37 UniRef50_A4XP72 RNA-binding S4 domain protein n=56 Tax=Gammaprot... 156 2e-37 UniRef50_B3PHB2 Heat shock protein 15 n=9 Tax=Proteobacteria Rep... 155 5e-37 UniRef50_Q2SPF7 Ribosome-associated heat shock protein implicate... 154 6e-37 UniRef50_Q15ZC8 RNA-binding S4 n=19 Tax=Gammaproteobacteria RepI... 154 6e-37 UniRef50_D0J2J0 RNA-binding S4 n=5 Tax=Bacteria RepID=D0J2J0_COMTE 154 1e-36 UniRef50_Q3ILP1 Heat shock protein 15, DNA/RNA-binding n=12 Tax=... 152 3e-36 UniRef50_Q0BI23 RNA-binding S4 domain protein n=59 Tax=Betaprote... 151 5e-36 UniRef50_Q500C9 RNA-binding S4 n=13 Tax=Gammaproteobacteria RepI... 151 6e-36 UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobact... 151 6e-36 UniRef50_A9BZ53 RNA-binding S4 domain protein n=8 Tax=Bacteria R... 150 1e-35 UniRef50_C6P442 RNA-binding S4 domain protein n=1 Tax=Sideroxyda... 150 1e-35 UniRef50_Q0EYY2 Heat shock protein 15 n=1 Tax=Mariprofundus ferr... 149 2e-35 UniRef50_Q1YS11 Ribosome-associated heat shock protein implicate... 149 3e-35 UniRef50_Q1H1V4 RNA-binding S4 n=2 Tax=Proteobacteria RepID=Q1H1... 149 3e-35 UniRef50_A6VR83 RNA-binding S4 domain protein n=3 Tax=Gammaprote... 149 4e-35 UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma prot... 147 8e-35 UniRef50_D0L3C9 RNA-binding S4 domain protein n=31 Tax=Bacteria ... 147 8e-35 UniRef50_C5V1W3 RNA-binding S4 domain protein n=1 Tax=Gallionell... 147 8e-35 UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium... 147 9e-35 UniRef50_D1W8V5 S4 domain protein n=2 Tax=Prevotella RepID=D1W8V... 146 2e-34 UniRef50_Q0A9G5 RNA-binding S4 domain protein n=3 Tax=Ectothiorh... 146 3e-34 UniRef50_C9LEL6 Heat shock protein 15 n=5 Tax=Prevotella RepID=C... 146 3e-34 UniRef50_B9Z2X0 RNA-binding S4 domain protein n=2 Tax=Neisseriac... 145 3e-34 UniRef50_A6T2N5 Heat shock protein 15 n=3 Tax=Proteobacteria Rep... 145 4e-34 UniRef50_C7RIC4 RNA-binding S4 domain protein n=1 Tax=Candidatus... 145 5e-34 UniRef50_C5VMC9 Heat shock protein 15 n=1 Tax=Prevotella melanin... 144 6e-34 UniRef50_Q01Z85 RNA-binding S4 domain protein n=4 Tax=Bacteria R... 144 8e-34 UniRef50_C4ZJ47 RNA-binding S4 domain protein n=1 Tax=Thauera sp... 144 9e-34 UniRef50_Q7MXL0 Heat shock protein 15 n=32 Tax=Bacteroidales Rep... 144 1e-33 UniRef50_Q1QAQ6 RNA-binding S4 n=5 Tax=Moraxellaceae RepID=Q1QAQ... 143 2e-33 UniRef50_B8GNB4 RNA-binding S4 domain protein n=7 Tax=Proteobact... 140 1e-32 UniRef50_B2UBP9 RNA-binding S4 domain protein n=11 Tax=cellular ... 140 1e-32 UniRef50_C9YFQ6 Putative uncharacterized protein n=1 Tax=Curviba... 139 2e-32 UniRef50_Q0AD54 RNA-binding S4 domain protein n=3 Tax=Nitrosomon... 139 3e-32 UniRef50_C2MAE5 Heat shock protein 15 n=8 Tax=Bacteria RepID=C2M... 139 3e-32 UniRef50_C6X0Q5 Ribosome-associated heat shock protein n=1 Tax=F... 138 4e-32 UniRef50_C1A9Y0 Heat shock protein 15 n=1 Tax=Gemmatimonas auran... 137 9e-32 UniRef50_A0M418 Protein containing RNA-binding S4 domain n=18 Ta... 136 2e-31 UniRef50_B6R6S6 RNA-binding S4 n=3 Tax=Alphaproteobacteria RepID... 136 3e-31 UniRef50_A5EY77 Ribosome-associated heat shock protein n=2 Tax=C... 134 1e-30 UniRef50_B9XC61 RNA-binding S4 domain protein n=2 Tax=Verrucomic... 133 1e-30 UniRef50_C0YT05 Heat shock protein 15 n=2 Tax=Flavobacteriaceae ... 133 2e-30 UniRef50_C7I4L5 RNA-binding S4 domain protein n=1 Tax=Thiomonas ... 132 2e-30 UniRef50_C7PRL2 RNA-binding S4 domain protein n=1 Tax=Chitinopha... 132 5e-30 UniRef50_B1Y782 RNA-binding S4 domain protein n=5 Tax=Burkholder... 131 7e-30 UniRef50_A6G6M5 Putative uncharacterized protein n=1 Tax=Plesioc... 129 2e-29 UniRef50_D2NQJ7 Ribosome-associated heat shock protein n=6 Tax=A... 129 2e-29 UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicro... 129 2e-29 UniRef50_Q2RYB5 RNA-binding S4 n=1 Tax=Rhodospirillum rubrum ATC... 129 2e-29 UniRef50_Q2P648 Heat shock protein 15 homolog n=13 Tax=Xanthomon... 129 3e-29 UniRef50_C6Y288 RNA-binding S4 domain protein n=4 Tax=Sphingobac... 129 3e-29 UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothioba... 129 4e-29 UniRef50_Q31JR0 RNA-binding S4-domain protein n=1 Tax=Thiomicros... 128 6e-29 UniRef50_Q1NY04 RNA-binding S4 n=1 Tax=delta proteobacterium MLM... 127 1e-28 UniRef50_UPI000050FC77 heat shock protein Hsp15 n=1 Tax=Brevibac... 126 2e-28 UniRef50_A0K0Y7 RNA-binding S4 domain protein n=12 Tax=Actinobac... 125 4e-28 UniRef50_C7LE02 S4 domain protein n=38 Tax=Rhizobiales RepID=C7L... 125 4e-28 UniRef50_Q0S6G3 Ribosome-associated heat shock protein n=7 Tax=A... 125 5e-28 UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID... 125 5e-28 UniRef50_Q169A4 Heat shock protein, putative n=22 Tax=Rhodobacte... 124 7e-28 UniRef50_C0BJS5 RNA-binding S4 domain protein n=1 Tax=Flavobacte... 124 1e-27 UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID... 124 1e-27 UniRef50_C5C3U9 RNA-binding S4 domain protein n=12 Tax=Actinomyc... 123 2e-27 UniRef50_Q47PE2 RNA-binding S4 n=1 Tax=Thermobifida fusca YX Rep... 121 6e-27 UniRef50_B5JNJ8 S4 domain protein n=1 Tax=Verrucomicrobiae bacte... 121 8e-27 UniRef50_B0MVH7 Putative uncharacterized protein n=1 Tax=Alistip... 119 2e-26 UniRef50_A7HTT3 RNA-binding S4 domain protein n=10 Tax=Alphaprot... 119 2e-26 UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales R... 119 3e-26 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 118 5e-26 UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaprote... 111 7e-24 UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospiril... 110 9e-24 UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicro... 107 1e-22 UniRef50_UPI000174635B protein containing RNA-binding S4 domain ... 106 3e-22 UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 100 1e-20 UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 100 2e-20 UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiale... 99 3e-20 UniRef50_Q0AMA8 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 98 8e-20 UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q... 96 3e-19 UniRef50_Q11CX7 RNA-binding S4 n=1 Tax=Chelativorans sp. BNC1 Re... 96 3e-19 UniRef50_B4RFP2 Ribosome-associated heat shock protein n=6 Tax=C... 95 7e-19 UniRef50_A3VNF6 S4 domain protein n=1 Tax=Parvularcula bermudens... 93 2e-18 UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litorali... 92 4e-18 UniRef50_A3UGK9 S4 domain protein n=1 Tax=Oceanicaulis alexandri... 92 5e-18 UniRef50_B0SXM9 RNA-binding S4 domain protein n=1 Tax=Caulobacte... 91 8e-18 UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacte... 91 8e-18 UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC25... 91 1e-17 UniRef50_B4WYP3 Putative uncharacterized protein n=1 Tax=Alcaniv... 91 1e-17 UniRef50_Q0BWQ4 S4 domain protein n=1 Tax=Hyphomonas neptunium A... 90 2e-17 UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis R... 88 7e-17 UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4... 88 8e-17 UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-2... 87 1e-16 UniRef50_Q6AE36 Ribosome-associated heat shock protein n=1 Tax=L... 86 3e-16 UniRef50_A3DIS8 RNA-binding S4 n=7 Tax=Clostridiales RepID=A3DIS... 86 3e-16 UniRef50_Q9KGI8 Uncharacterized protein BH0073 n=176 Tax=Firmicu... 82 4e-15 UniRef50_B8FZC2 RNA-binding S4 domain protein n=2 Tax=Desulfitob... 82 6e-15 UniRef50_A8RA49 Putative uncharacterized protein n=2 Tax=unclass... 82 7e-15 UniRef50_P37557 Uncharacterized protein yabO n=25 Tax=Bacteria R... 81 8e-15 UniRef50_C8WQS2 RNA-binding S4 domain protein n=2 Tax=Alicycloba... 79 5e-14 UniRef50_P64406 Uncharacterized protein spr0007 n=42 Tax=Bacteri... 73 2e-12 Sequences not found previously or not previously below threshold: UniRef50_A9E5L5 Heat shock protein 15 n=1 Tax=Kordia algicida OT... 95 8e-19 UniRef50_C6XPI0 RNA-binding S4 domain protein n=1 Tax=Hirschia b... 81 1e-14 UniRef50_B7AVE5 Putative uncharacterized protein n=1 Tax=Bactero... 76 5e-13 UniRef50_Q03N19 Ribosome-associated heat shock protein implicate... 74 1e-12 UniRef50_C5RJP4 RNA-binding S4 domain protein n=2 Tax=Clostridiu... 74 2e-12 UniRef50_A9NE18 S4 RNA-binding domain protein n=1 Tax=Acholeplas... 74 2e-12 UniRef50_A7H4E7 S4 domain protein n=30 Tax=Epsilonproteobacteria... 74 2e-12 UniRef50_C5EYQ4 Putative uncharacterized protein n=3 Tax=Helicob... 73 2e-12 UniRef50_B0VF38 RNA-binding S4 n=1 Tax=Candidatus Cloacamonas ac... 72 5e-12 UniRef50_Q046E2 Ribosome-associated heat shock protein implicate... 72 7e-12 UniRef50_B1ZVL5 Heat shock protein 15 n=1 Tax=Opitutus terrae PB... 70 2e-11 UniRef50_A0NWS1 RNA-binding S4 n=1 Tax=Labrenzia aggregata IAM 1... 70 2e-11 UniRef50_Q9ZIM1 Uncharacterized protein Lmo0216 n=117 Tax=Bacter... 69 4e-11 UniRef50_B9DKZ3 Putative uncharacterized protein n=1 Tax=Staphyl... 68 7e-11 UniRef50_D2MMW4 S4 domain protein n=1 Tax=Bulleidia extructa W12... 68 8e-11 UniRef50_C8P218 S4 domain protein n=1 Tax=Erysipelothrix rhusiop... 68 9e-11 UniRef50_D1AVF5 RNA-binding S4 domain protein n=3 Tax=Fusobacter... 67 1e-10 UniRef50_B5EL81 RNA-binding S4 domain protein n=3 Tax=Acidithiob... 67 2e-10 UniRef50_Q9ZJJ0 Uncharacterized protein jhp_1318 n=14 Tax=Helico... 67 2e-10 UniRef50_B9TH32 Putative uncharacterized protein n=1 Tax=Ricinus... 67 2e-10 UniRef50_A6QAM8 RNA-binding S4 protein n=6 Tax=Epsilonproteobact... 66 3e-10 UniRef50_A7HLN2 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 66 3e-10 UniRef50_C9RA17 RNA-binding S4 domain protein n=1 Tax=Ammonifex ... 65 7e-10 UniRef50_C9MA32 S4 domain protein n=2 Tax=Synergistaceae RepID=C... 64 2e-09 UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=E... 64 2e-09 UniRef50_D1B612 RNA-binding S4 domain protein n=2 Tax=Synergista... 62 5e-09 UniRef50_A8F4I8 RNA-binding S4 domain protein n=1 Tax=Thermotoga... 61 1e-08 UniRef50_C1SMC4 Ribosome-associated heat shock protein implicate... 61 2e-08 UniRef50_A8LQY6 RNA-binding S4 n=1 Tax=Dinoroseobacter shibae DF... 60 2e-08 UniRef50_UPI0001BC589E heat shock protein 15 n=3 Tax=Fusobacteri... 60 2e-08 UniRef50_C5CFR5 RNA-binding S4 domain protein n=1 Tax=Kosmotoga ... 60 3e-08 UniRef50_B5Y800 Heat shock protein 15 n=1 Tax=Coprothermobacter ... 56 4e-07 UniRef50_D2C7K9 RNA-binding S4 domain protein n=5 Tax=Thermotoga... 56 5e-07 UniRef50_UPI0001694F8C YabO n=1 Tax=Paenibacillus larvae subsp. ... 54 2e-06 UniRef50_Q0FF40 Putative uncharacterized protein n=1 Tax=Rhodoba... 52 5e-06 UniRef50_A5TSN2 Ribosome-associated heat shock protein n=10 Tax=... 52 5e-06 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 52 8e-06 UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglo... 51 2e-05 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 49 4e-05 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 49 5e-05 UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1... 49 6e-05 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 49 7e-05 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 48 1e-04 UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeot... 47 1e-04 UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacte... 47 1e-04 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 47 2e-04 UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerof... 47 2e-04 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 47 2e-04 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 46 3e-04 UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosae... 46 3e-04 UniRef50_A6Q7G3 Hemolysin A n=2 Tax=Epsilonproteobacteria RepID=... 46 3e-04 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 46 3e-04 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 46 4e-04 UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7... 46 4e-04 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 46 5e-04 UniRef50_A8RBL3 Putative uncharacterized protein n=1 Tax=Eubacte... 45 7e-04 UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Le... 45 8e-04 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 45 9e-04 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 45 9e-04 UniRef50_A4VTL3 Uncharacterized conserved protein, contains S4-l... 45 9e-04 UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B... 44 0.001 UniRef50_Q7VIT5 Putative uncharacterized protein n=2 Tax=Helicob... 44 0.002 UniRef50_C0ABD6 Hemolysin A n=2 Tax=Verrucomicrobia RepID=C0ABD6... 44 0.002 UniRef50_C1FHS6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 44 0.002 UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acne... 44 0.002 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 43 0.002 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 43 0.002 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 43 0.002 UniRef50_B5ZBT3 Ribosomal RNA large subunit methyltransferase J ... 43 0.003 UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepI... 42 0.004 UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetace... 42 0.005 UniRef50_Q3AAH6 S4 domain protein n=1 Tax=Carboxydothermus hydro... 42 0.005 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 42 0.005 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 42 0.005 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 42 0.006 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 42 0.007 UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter... 42 0.007 UniRef50_B0K2W4 RNA-binding S4 domain protein n=10 Tax=Thermoana... 42 0.007 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 42 0.008 UniRef50_B9EB58 Putative uncharacterized protein n=1 Tax=Macroco... 42 0.008 UniRef50_Q02WY5 Cell division protein, S4-like domain n=4 Tax=La... 42 0.008 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 41 0.009 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 41 0.009 UniRef50_UPI000050FCA1 hypothetical protein BlinB_07935 n=1 Tax=... 41 0.010 UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobac... 41 0.010 UniRef50_C2LQX1 RNA binding protein n=1 Tax=Streptococcus saliva... 41 0.011 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 41 0.012 UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepI... 41 0.013 UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei19... 41 0.013 UniRef50_C7H0C7 Hemolysin A n=1 Tax=Eubacterium saphenum ATCC 49... 41 0.013 UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=... 41 0.014 UniRef50_C7LZB3 Hemolysin A n=1 Tax=Acidimicrobium ferrooxidans ... 40 0.016 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 40 0.017 UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=pr... 40 0.017 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 40 0.017 UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis ... 40 0.017 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 40 0.017 UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepI... 40 0.018 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 40 0.019 UniRef50_A3DDJ5 RNA-binding S4 n=3 Tax=Clostridium thermocellum ... 40 0.020 UniRef50_UPI00016B2072 Hemolysin A n=3 Tax=candidate division TM... 40 0.021 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 40 0.023 UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacte... 40 0.023 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 40 0.025 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 40 0.025 UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 40 0.028 UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 T... 40 0.030 UniRef50_Q47JN8 Hemolysin A n=4 Tax=Betaproteobacteria RepID=Q47... 40 0.030 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 40 0.030 UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepI... 40 0.030 UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C... 40 0.030 UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminoc... 39 0.034 UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular orga... 39 0.039 UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID... 39 0.040 UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/... 39 0.044 UniRef50_Q03L90 Cell division protein, contains S4-like domain n... 39 0.044 UniRef50_Q2JUA0 Hemolysin A n=8 Tax=Cyanobacteria RepID=Q2JUA0_S... 39 0.045 UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium ... 39 0.045 UniRef50_B4UM41 Pseudouridine synthase, RluA family n=4 Tax=Anae... 39 0.046 UniRef50_A6WWC5 Hemolysin A n=9 Tax=Bacteria RepID=A6WWC5_OCHA4 39 0.047 UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteri... 39 0.051 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 39 0.052 UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria ... 39 0.053 UniRef50_A8IBR4 Hemolysin A n=63 Tax=Alphaproteobacteria RepID=A... 39 0.054 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 39 0.056 UniRef50_C8WW52 Putative uncharacterized protein n=1 Tax=Alicycl... 39 0.056 UniRef50_C4KD21 RNA-binding S4 domain protein n=1 Tax=Thauera sp... 39 0.058 UniRef50_A4XKR0 RNA-binding S4 domain protein n=2 Tax=Clostridia... 39 0.059 UniRef50_A1ZQW5 Pseudouridine synthase n=1 Tax=Microscilla marin... 39 0.059 UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C7... 39 0.060 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 39 0.061 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 39 0.069 UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID... 39 0.070 UniRef50_A6NR04 Putative uncharacterized protein n=1 Tax=Bactero... 38 0.081 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 38 0.083 UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidios... 38 0.084 UniRef50_C4WXG6 ACYPI004962 protein n=1 Tax=Acyrthosiphon pisum ... 38 0.085 UniRef50_Q5WFI1 Putative uncharacterized protein n=1 Tax=Bacillu... 38 0.088 UniRef50_D2RJV3 RNA-binding S4 domain protein n=1 Tax=Acidaminoc... 38 0.088 >UniRef50_P0ACH0 Heat shock protein 15 n=250 Tax=cellular organisms RepID=HSLR_ECO57 Length = 133 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG Sbjct: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE Sbjct: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 Query: 121 RRDLLRFKHGDSE 133 RRDLLRFKHGDSE Sbjct: 121 RRDLLRFKHGDSE 133 >UniRef50_D0FX09 Heat shock protein 15 n=2 Tax=Erwinia pyrifoliae RepID=D0FX09_ERWPY Length = 133 Score = 169 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 106/133 (79%), Positives = 119/133 (89%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 MKEK VRLDKWLWAARFYKTRA AR+MIEGGKVHYNGQRSKPSK+VE+ ATLTLRQG Sbjct: 1 MKEKTGEGVRLDKWLWAARFYKTRAAARQMIEGGKVHYNGQRSKPSKLVEIAATLTLRQG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 NDERTVIV A++++R PASEA LLY ETAES+ KREK+ALARK+NAL+MPHPDRRPDKKE Sbjct: 61 NDERTVIVAAVSDKRGPASEAQLLYSETAESIAKREKVALARKMNALSMPHPDRRPDKKE 120 Query: 121 RRDLLRFKHGDSE 133 RRDL++FKH E Sbjct: 121 RRDLMKFKHSGDE 133 >UniRef50_Q7MQ01 Ribosome-associated heat shock protein n=3 Tax=Gammaproteobacteria RepID=Q7MQ01_VIBVY Length = 130 Score = 161 bits (407), Expect = 7e-39, Method: Composition-based stats. Identities = 83/127 (65%), Positives = 102/127 (80%), Gaps = 1/127 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 P VRLDKWLWAARFYKTR++AR+M++GGKVHYNGQR+KPSKIVE+ A L LRQGN+ Sbjct: 4 SSPNEAVRLDKWLWAARFYKTRSIARDMVDGGKVHYNGQRAKPSKIVEVGAVLKLRQGNE 63 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 E+TV+++ ++ QRR A EA LY ET ES KRE A+ RKLNA P PDRRPDKK+RR Sbjct: 64 EKTVVIEKLSTQRRGAPEAQTLYSETQESQAKREAQAMQRKLNAHN-PSPDRRPDKKQRR 122 Query: 123 DLLRFKH 129 D+++FKH Sbjct: 123 DIIKFKH 129 >UniRef50_B4F027 Heat shock protein 15 n=3 Tax=Proteus RepID=B4F027_PROMH Length = 137 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 90/123 (73%), Positives = 101/123 (82%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 VRLDKWLWAARFYKTRA+AR MIEGGKVHYNG R KPSK VE+ A + LRQGNDERTV Sbjct: 8 SAVRLDKWLWAARFYKTRAIARTMIEGGKVHYNGVRGKPSKNVEVGAEIRLRQGNDERTV 67 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 V ++ QR A++A LLY ET ES+ KREK+ALARK+NALTMPHP+RRPDKKERR LLR Sbjct: 68 TVLMVSAQRLGAAQAQLLYCETPESIAKREKIALARKMNALTMPHPERRPDKKERRTLLR 127 Query: 127 FKH 129 K Sbjct: 128 LKQ 130 >UniRef50_C6WVI1 RNA-binding S4 domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WVI1_METML Length = 132 Score = 157 bits (398), Expect = 8e-38, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 78/130 (60%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M + + RLDKWLWAARF+KTR+LA I+ GKVH +G R KP+K V + T+ +R Sbjct: 1 MASEADSKCRLDKWLWAARFFKTRSLATTAIDTGKVHVDGDRVKPAKEVHIGQTIHIRNR 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + E V V+A++ R+ A EAALLY ET S+ KRE L + + RP K++ Sbjct: 61 DFEIEVTVQALSNVRKGAPEAALLYTETPASISKRENAKLTGEHDFAQRDRGAGRPTKRQ 120 Query: 121 RRDLLRFKHG 130 RD+ +F G Sbjct: 121 LRDIKKFTGG 130 >UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=27 Tax=Neisseriaceae RepID=B4RLH8_NEIG2 Length = 133 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 1/132 (0%) Query: 1 MKEK-PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ 59 MK+K + +RLDKWLWAARF+KTR+LA++ IE G+V NG + K SK +++ + L Sbjct: 1 MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKNSKTIDIGDIIDLTL 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 + + VK + QRRPA EA LLYEE A++ RE+ + + +T HPD RP K+ Sbjct: 61 NSLPHKIKVKGLNHQRRPAPEARLLYEEDAKTAALREECKQLDQFSRITSAHPDGRPTKR 120 Query: 120 ERRDLLRFKHGD 131 +RR L R K GD Sbjct: 121 DRRQLDRLKKGD 132 >UniRef50_A4XP72 RNA-binding S4 domain protein n=56 Tax=Gammaproteobacteria RepID=A4XP72_PSEMY Length = 170 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 72/132 (54%), Positives = 86/132 (65%), Gaps = 1/132 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M EK +VRLDKWLWAARFYKTRALA+ IEGGKVH+ G+R KP K + LR G Sbjct: 28 MSEKDDDKVRLDKWLWAARFYKTRALAKAAIEGGKVHHRGERCKPGKEPRIGDEYVLRTG 87 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 DERTV+V A++ RR A EA LLY ET ES+ +RE+ A RK AL M D RP KK+ Sbjct: 88 FDERTVVVLALSAVRRGAPEAQLLYRETDESIARREQAAAMRKAGALGM-QTDGRPSKKQ 146 Query: 121 RRDLLRFKHGDS 132 RR + +F Sbjct: 147 RRQIHQFNEQQE 158 >UniRef50_B3PHB2 Heat shock protein 15 n=9 Tax=Proteobacteria RepID=B3PHB2_CELJU Length = 149 Score = 155 bits (392), Expect = 5e-37, Method: Composition-based stats. Identities = 67/127 (52%), Positives = 88/127 (69%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + ++R+DKWLWAARF+KTR+LA++ I+GGK+H +GQR K SK V + L +RQ D Sbjct: 15 DADDDKIRIDKWLWAARFFKTRSLAKQAIDGGKIHCDGQRIKASKEVTIGLVLNIRQDWD 74 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 E+TV+VKA+++QRR A EAALLY ET SV REK L RK D RP+KKERR Sbjct: 75 EKTVVVKALSDQRRGAPEAALLYAETEASVALREKRRLERKAGLGAFIVSDHRPNKKERR 134 Query: 123 DLLRFKH 129 + RF+ Sbjct: 135 QIHRFQR 141 >UniRef50_Q2SPF7 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=15 Tax=Gammaproteobacteria RepID=Q2SPF7_HAHCH Length = 137 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 71/128 (55%), Positives = 88/128 (68%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +VRLDKWLWAARFYKTR LA+E IEGG+VHYNG R KP ++VE A +TL+QG Sbjct: 5 ASATEHKVRLDKWLWAARFYKTRTLAKEAIEGGRVHYNGARVKPGRVVEAGAEVTLKQGW 64 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 E+TV+V I+E+R PA A LY+ET SVEKRE++A +K P RRP KK+R Sbjct: 65 SEKTVLVLDISEKRGPAPVAQKLYQETEASVEKREQLAWQQKQIQAAQLPPARRPTKKQR 124 Query: 122 RDLLRFKH 129 R + RFK Sbjct: 125 RMIHRFKE 132 >UniRef50_Q15ZC8 RNA-binding S4 n=19 Tax=Gammaproteobacteria RepID=Q15ZC8_PSEA6 Length = 138 Score = 154 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 71/122 (58%), Positives = 88/122 (72%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 VRLDKWLWAARF+KTRALARE + GKV YNGQR KPSK VEL T+ + QG D + +I Sbjct: 16 SVRLDKWLWAARFFKTRALAREAVMSGKVSYNGQRCKPSKAVELKVTIKVPQGYDVKEII 75 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V + E RR A A ++EET ES+ +REK A RKL+A P PD+RPDKK+RR +++ Sbjct: 76 VVELAEHRRSAPLAQRMFEETPESLAQREKNAEMRKLSAFHSPKPDQRPDKKQRRQIIQL 135 Query: 128 KH 129 KH Sbjct: 136 KH 137 >UniRef50_D0J2J0 RNA-binding S4 n=5 Tax=Bacteria RepID=D0J2J0_COMTE Length = 158 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 4/131 (3%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 +RLDKWLW ARFYKTR+LA E I G+V N +K S+ + + LRQGN Sbjct: 13 MSETESMRLDKWLWCARFYKTRSLAVEEIGKGRVTVNNANAKASREIRPGDHIHLRQGNI 72 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP----DRRPDK 118 R VIV+ ++ R PA A LYEETA+S+ +RE++A R+L RP K Sbjct: 73 PREVIVRGLSGMRGPAPVAQQLYEETAQSIAQREQLAEQRRLAPEPAEALAAQHTGRPTK 132 Query: 119 KERRDLLRFKH 129 ++RR++ R + Sbjct: 133 RDRREIDRVRQ 143 >UniRef50_Q3ILP1 Heat shock protein 15, DNA/RNA-binding n=12 Tax=Proteobacteria RepID=Q3ILP1_PSEHT Length = 140 Score = 152 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 75/128 (58%), Positives = 100/128 (78%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K +++RLDKWLWAARFYKTRA AREM++GGKVHYNGQR+K KIVE+ AT+ L QG Sbjct: 11 LEHKDELKIRLDKWLWAARFYKTRAAAREMVQGGKVHYNGQRTKAGKIVEIGATIKLAQG 70 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 DE+ V V I E+R+ A A LY+E+ S+ KRE+ ++ARK N+L PHPD++PDKK+ Sbjct: 71 VDEKIVTVLKILEKRQSAPIAQTLYQESDASIAKREENSIARKNNSLFAPHPDKKPDKKQ 130 Query: 121 RRDLLRFK 128 RR+LL+ K Sbjct: 131 RRELLKLK 138 >UniRef50_Q0BI23 RNA-binding S4 domain protein n=59 Tax=Betaproteobacteria RepID=Q0BI23_BURCM Length = 157 Score = 151 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 63/130 (48%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + +P +R+DKWLWAARF+KTR+LA + ++ G V G KP+K V + + + Sbjct: 27 ISTEPGARLRIDKWLWAARFFKTRSLASDAVDKGHVKIGGAAVKPAKDVRVGDEVEIAID 86 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V I + R PAS A LY ET R R+ RP K++ Sbjct: 87 GVVWHIAVLGICDVRGPASIAQTLYAETEAGRVARLAELERRRTYREPAAELHGRPTKRD 146 Query: 121 RRDLLRFKHG 130 RR + RF G Sbjct: 147 RRIIDRFSGG 156 >UniRef50_Q500C9 RNA-binding S4 n=13 Tax=Gammaproteobacteria RepID=Q500C9_PSEU2 Length = 135 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 63/127 (49%), Positives = 82/127 (64%), Gaps = 1/127 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K + +VRLDKWLWAARF+KTRALA+ IE GKVH G+R KP K + +R G Sbjct: 4 KMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIRMGF 63 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 D+RTV+V+A++ RR A EA LY ET ES+ +RE A RK L + D +P KK+R Sbjct: 64 DDRTVVVEALSIVRRGAPEAQTLYHETPESIARRENAAAQRKAGNLGV-TTDGKPTKKQR 122 Query: 122 RDLLRFK 128 R+L F+ Sbjct: 123 RELFGFR 129 >UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobacteria RepID=A0LDZ0_MAGSM Length = 130 Score = 151 bits (382), Expect = 6e-36, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 1/130 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M +R+DKWLWAARF+KTRALA + + GG VH NGQR K S V++ L + +G Sbjct: 1 MSPSNEARLRIDKWLWAARFFKTRALATDAVNGGHVHLNGQRIKASHQVKVGDRLEITKG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH-PDRRPDKK 119 + ++++ + ++R PA A LY E+ S + R +A ++ ++ P RP K+ Sbjct: 61 PVQFALVIEGLHDKRGPAPAAQQLYCESEASKQARVAVADQQRAERISRPDYGSARPTKR 120 Query: 120 ERRDLLRFKH 129 +RR + R K Sbjct: 121 DRRAMDRLKG 130 >UniRef50_A9BZ53 RNA-binding S4 domain protein n=8 Tax=Bacteria RepID=A9BZ53_DELAS Length = 149 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 4/131 (3%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 +RLDKWLW ARFYKTR+LA E I G++ NG KP++ V T+ LRQG Sbjct: 1 MTDIESMRLDKWLWCARFYKTRSLAVEEIGKGRITVNGALVKPAREVRCGDTVALRQGQI 60 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALT----MPHPDRRPDK 118 RTV+++ ++ R PA A LYEETA S+ +RE++A R+L D RP K Sbjct: 61 PRTVVIRGLSGMRGPAPVAQALYEETAASLAERERLAEQRRLAPEPASSIADQHDGRPTK 120 Query: 119 KERRDLLRFKH 129 ++RR + + + Sbjct: 121 RDRRQIDQVRE 131 >UniRef50_C6P442 RNA-binding S4 domain protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P442_9PROT Length = 144 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 2/127 (1%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 + ++R+DKWLWAARF+KTR+LA + +E GKV G R KP+K + + L +R G Sbjct: 7 QADDKLRIDKWLWAARFFKTRSLAVDAVESGKVTMGGVRIKPAKAIVVGDQLDIRLGQYH 66 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 + V A+ +R PA+EA LY E+ ES +R ++A L AL P RP K++RRD Sbjct: 67 FAIEVLALANRRGPAAEAQKLYRESDESRARRAEIAA--NLKALPQPTFKGRPTKRDRRD 124 Query: 124 LLRFKHG 130 + RF+ G Sbjct: 125 IERFEAG 131 >UniRef50_Q0EYY2 Heat shock protein 15 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYY2_9PROT Length = 129 Score = 149 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 60/125 (48%), Positives = 81/125 (64%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 VR+DKWLWAARF+KTR LA EM+ GG V NG R+K S+ V++ TL++++ + V Sbjct: 5 SVRIDKWLWAARFFKTRGLATEMVSGGHVQINGDRAKASRAVQVGDTLSIQREQELFIVT 64 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V + E+R A+ A LY+ETA SV R RKL+A + P P+RRPDKK RR ++RF Sbjct: 65 VTGLAEKRGSATIAQTLYQETAASVAARATQQQLRKLHAASAPAPERRPDKKARRQIIRF 124 Query: 128 KHGDS 132 D Sbjct: 125 TRRDD 129 >UniRef50_Q1YS11 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit n=2 Tax=Proteobacteria RepID=Q1YS11_9GAMM Length = 124 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 66/122 (54%), Positives = 85/122 (69%), Gaps = 1/122 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 +VR+DKWLWAARF+KTR+LA+ IEGGKV +G +SK S+ +EL LT+RQG D +T Sbjct: 1 MDKVRIDKWLWAARFFKTRSLAKSAIEGGKVQIDGNKSKASRQLELGTILTIRQGFDSKT 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V ++EQRR A EA LLY ETAES+ REK + RK A D +P+KK+RR + Sbjct: 61 VEVIGLSEQRRGAPEALLLYTETAESIALREKDSALRK-AANGSSISDGKPNKKQRRQIH 119 Query: 126 RF 127 RF Sbjct: 120 RF 121 >UniRef50_Q1H1V4 RNA-binding S4 n=2 Tax=Proteobacteria RepID=Q1H1V4_METFK Length = 131 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 82/129 (63%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + + RLDKWLWAARF+KTR+LA E ++ GKVH +G R KP+K V L + +R+ Sbjct: 2 SEQESKCRLDKWLWAARFFKTRSLASEAVDTGKVHVDGDRVKPAKEVRLGQRIHIRRKEM 61 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 E V+V+ ++ QRR A EAALLYEET ES+ +RE + + R+ RP K++RR Sbjct: 62 EVEVVVRGLSTQRRGAPEAALLYEETPESISRRENLTVTREHEHARRERGMGRPTKRQRR 121 Query: 123 DLLRFKHGD 131 D+ +F D Sbjct: 122 DIKKFTGID 130 >UniRef50_A6VR83 RNA-binding S4 domain protein n=3 Tax=Gammaproteobacteria RepID=A6VR83_MARMS Length = 138 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 68/128 (53%), Positives = 87/128 (67%), Gaps = 1/128 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K+ VRLDKWLWAARF+KTR+L ++ I+GGKV YNG + K S+ VE+ A + +R G Sbjct: 6 KQSAPQAVRLDKWLWAARFFKTRSLCKDAIDGGKVSYNGSKGKASRNVEIGALIGIRVGW 65 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 DE+ V +K I+ QRR A EA LLYEET ES+EKREK AL K D +P+KKER Sbjct: 66 DEKVVKIKDISGQRRGAPEAQLLYEETPESIEKREKRALENKS-FGGRIMSDHKPNKKER 124 Query: 122 RDLLRFKH 129 RD+ + K Sbjct: 125 RDIKQLKK 132 >UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS43_9GAMM Length = 134 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 59/132 (44%), Positives = 81/132 (61%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +K +RLDKWLWAARFYKTR+LA I GG VH N +R KP+K ++ + +R+G Sbjct: 3 ADKSLQTLRLDKWLWAARFYKTRSLATAAISGGHVHLNSERIKPAKTLKCGDEVRIRKGQ 62 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 E T++V+AI+++R PA+ A LY ETAES KRE+ + +P RPDK + Sbjct: 63 MEITIVVEAISDRRGPAAVAQTLYRETAESQIKREQDKSQIRAERAALPTTRGRPDKHTQ 122 Query: 122 RDLLRFKHGDSE 133 R+L R K E Sbjct: 123 RELRRLKKEQGE 134 >UniRef50_D0L3C9 RNA-binding S4 domain protein n=31 Tax=Bacteria RepID=D0L3C9_GORB4 Length = 293 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 5/124 (4%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 + R+D W+WA R KTR+ A GG V NG +KP++ V + +R ER V Sbjct: 1 MSTRVDAWIWAIRLTKTRSAAGAACRGGHVRVNGATAKPAQPVVPGDEVRVRLSGRERVV 60 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 V +R A AA Y + + RE +A + RP K+ERR L + Sbjct: 61 EVTKTISKRVSAPMAAECYIDRSPPPPPREVVASQPR-----RDRGAGRPTKRERRQLDQ 115 Query: 127 FKHG 130 + G Sbjct: 116 LRGG 119 >UniRef50_C5V1W3 RNA-binding S4 domain protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1W3_9PROT Length = 129 Score = 147 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 1/129 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++R+DKWLWAARFYKTR+LA IE G+V +G R KP+K + + L G Sbjct: 2 SDTTKKLRIDKWLWAARFYKTRSLALHAIENGRVLMDGVRVKPAKTIATGDHIVLHFGQA 61 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 + + V A++++R PA A LY E+ ES +R MA ++ + RP KK+RR Sbjct: 62 KFDIEVLALSDKRGPAPVAHQLYRESDESAARRALMAEQHRMQPE-IAVFKYRPTKKDRR 120 Query: 123 DLLRFKHGD 131 ++ +F++G+ Sbjct: 121 EIEKFRNGE 129 >UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ35_HALO1 Length = 167 Score = 147 bits (372), Expect = 9e-35, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 VRLDKWLWAARF+KTR+LA + + GGKV NG KP+K V++ L +R+G Sbjct: 34 ASAVGERVRLDKWLWAARFFKTRSLAAQEVTGGKVQLNGDHVKPAKPVKVGDVLRIRKGM 93 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP-----DRRP 116 E + V + +R P ++A LYEE+ S + RE++A +L P RP Sbjct: 94 FEHEITVIKLGARRGPPAQAQGLYEESEASKQAREELAERLRLEREHSLPPIPKFAKGRP 153 Query: 117 DKKERRDLLRFKH 129 K++RR + RFK Sbjct: 154 TKRDRRQIDRFKG 166 >UniRef50_D1W8V5 S4 domain protein n=2 Tax=Prevotella RepID=D1W8V5_9BACT Length = 159 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K R+DKWLWAAR +KTR LA + + +V NG KPS +++ T+ +++ Sbjct: 11 LRVKDTGSARIDKWLWAARIFKTRTLAADACKNNRVSVNGVNVKPSHVIKPGETIDVKKP 70 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V EQR A +YE ++ ++ E + ++R + RP KK+ Sbjct: 71 PITYSFKVIKTIEQRVGAKFIPQIYENVTDA-KQYELLEMSRISGFVDRARGTGRPTKKD 129 Query: 121 RRDLLRFKH 129 RR + F Sbjct: 130 RRSMDAFVR 138 >UniRef50_Q0A9G5 RNA-binding S4 domain protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A9G5_ALHEH Length = 136 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 63/131 (48%), Positives = 85/131 (64%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++P +VRLD+WLWAARF+KTR LA E I+GGKV +G +KP++ V + +R+G Sbjct: 6 DQPTAKVRLDRWLWAARFFKTRRLAVEAIKGGKVEVDGVNAKPAREVGAGNRVRVRKGAI 65 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 V+V+ + QR PA A LYEET ESV REK+ +++NA +P PD RPDK+ RR Sbjct: 66 TFEVVVRDVANQRGPAKVAQQLYEETPESVAAREKVREQQRMNAAFVPRPDHRPDKRSRR 125 Query: 123 DLLRFKHGDSE 133 L R K G E Sbjct: 126 QLARVKRGGGE 136 >UniRef50_C9LEL6 Heat shock protein 15 n=5 Tax=Prevotella RepID=C9LEL6_9BACT Length = 152 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 1/121 (0%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 E RLDKWLWAAR +KTR LA + + G+V NG ++KP++ V++ +++R+ T Sbjct: 3 AEARLDKWLWAARIFKTRTLAADACKNGRVQINGAQAKPARSVKVGDRISVRKSPVTYTF 62 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 +K+ E+R A +YE E+ E + L++ + RP KK+RR L Sbjct: 63 RIKSAIEKRVGAKLLPDVYENITTP-EQYELLELSKISGFVNRARGTGRPTKKDRRALDE 121 Query: 127 F 127 F Sbjct: 122 F 122 >UniRef50_B9Z2X0 RNA-binding S4 domain protein n=2 Tax=Neisseriaceae RepID=B9Z2X0_9NEIS Length = 136 Score = 145 bits (367), Expect = 3e-34, Method: Composition-based stats. Identities = 60/126 (47%), Positives = 79/126 (62%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 +VRLDKWLWAARFYKTR LA E +E G+V G+R K S++V++ L LR E Sbjct: 10 EEGKVRLDKWLWAARFYKTRQLAHEALELGRVTLGGERVKASRVVKVGDRLHLRINQLEY 69 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + V+ +T QRR ASEA LLY E+ S RE+ K ++ PH RP KK+RR++ Sbjct: 70 DIEVRTLTAQRRSASEAQLLYAESEASRLAREEKQALLKAERVSFPHGAGRPTKKDRREI 129 Query: 125 LRFKHG 130 RFK+G Sbjct: 130 QRFKNG 135 >UniRef50_A6T2N5 Heat shock protein 15 n=3 Tax=Proteobacteria RepID=A6T2N5_JANMA Length = 126 Score = 145 bits (366), Expect = 4e-34, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 72/122 (59%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 VRLDKWLWAARF+KTR+LA + ++ GKV +R KP++ V+ L + G+ Sbjct: 2 ATENVRLDKWLWAARFFKTRSLATDAVDKGKVRLEQERIKPARTVKCGDLLQIDNGSTVW 61 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 V+V+A+++ R A A LY ET +S+++R++ A RK RP K++RR L Sbjct: 62 EVVVQALSDVRGSAEMAQKLYAETEQSLKQRQQDADQRKFFREPGLGIKGRPTKRDRRLL 121 Query: 125 LR 126 + Sbjct: 122 DK 123 >UniRef50_C7RIC4 RNA-binding S4 domain protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RIC4_9PROT Length = 134 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 68/122 (55%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DKWLW ARFYKTR+LA + I G V G KP++ + +L + G+ +V+V Sbjct: 12 IRIDKWLWTARFYKTRSLAAQAIAAGHVRLAGHPVKPARDLRCGDSLEIAIGDTIWSVVV 71 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + + EQRRPA EA LYEET S E+R R L + RP KK RR + F Sbjct: 72 RGLNEQRRPAVEAQQLYEETRASSERRATQRETRLLAPVPGSDLRGRPTKKARRQIRGFN 131 Query: 129 HG 130 G Sbjct: 132 EG 133 >UniRef50_C5VMC9 Heat shock protein 15 n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VMC9_9BACT Length = 140 Score = 144 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+DKWLWAAR YKTR++A + + G+V G KPS ++ +++++ + V Sbjct: 6 RIDKWLWAARIYKTRSIAADACKNGRVTIKGINVKPSHTIKAGEVVSVKKSPIIYSFKVL 65 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 EQR A +YE ++ ++ E + ++R + RP KK+RR + F Sbjct: 66 KPIEQRVGAKLIPEVYENVTDA-KQYELLEMSRISGFVDRARGTGRPTKKDRRQMDAF 122 >UniRef50_Q01Z85 RNA-binding S4 domain protein n=4 Tax=Bacteria RepID=Q01Z85_SOLUE Length = 135 Score = 144 bits (364), Expect = 8e-34, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 75/129 (58%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ P VR+DKWLWAARF+KTR+LA + E G++ NGQ +K ++ V L +R Sbjct: 5 VENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLRVRNE 64 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V+V +++ R PA+ A LLY ET S E R K+A R++ + RP K++ Sbjct: 65 GGDFEVLVLGVSDMRGPAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRPSKRD 124 Query: 121 RRDLLRFKH 129 RR + R + Sbjct: 125 RRVMGRLRG 133 >UniRef50_C4ZJ47 RNA-binding S4 domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJ47_THASP Length = 133 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 57/126 (45%), Positives = 76/126 (60%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDKWLWAARF+K R A E ++GGKV NG +KP++ +++ L + G D Sbjct: 7 SDTARTRLDKWLWAARFFKHRTGATEAVDGGKVKLNGMAAKPARELKVGDRLDITIGEDT 66 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 RTVIV+AI ++R A+ A LYEETAES+E RE+ RK A RP K++RR Sbjct: 67 RTVIVRAIADKRGSAAVAQALYEETAESIEARERARELRKFAAAPGADLHGRPTKRDRRR 126 Query: 124 LLRFKH 129 + RF Sbjct: 127 MDRFGG 132 >UniRef50_Q7MXL0 Heat shock protein 15 n=32 Tax=Bacteroidales RepID=Q7MXL0_PORGI Length = 145 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 1/124 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 EVR+D+W+WA R +KTR +A + + +V NG ++KPS++V + + +R+ + Sbjct: 1 MEEVRIDRWMWATRIFKTRTIATDACKKSRVTVNGLQAKPSRMVRVGDVIQVRKPPVTYS 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 + A+ + R A + E E+ E + + R + RP KK+RR+L Sbjct: 61 FRILALAQNRMGAKLVKD-FLENITPPEEYEILEMQRISGFVDRAKGTGRPTKKDRRELE 119 Query: 126 RFKH 129 +F Sbjct: 120 QFSE 123 >UniRef50_Q1QAQ6 RNA-binding S4 n=5 Tax=Moraxellaceae RepID=Q1QAQ6_PSYCK Length = 146 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 6/135 (4%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 AV +RLDKWLWAARFY+TR LA+E IE G+VHY G R+K SK + + L +RQG+ Sbjct: 14 SNPDAVRMRLDKWLWAARFYRTRTLAKEAIESGRVHYAGSRAKTSKEITVGDELQIRQGS 73 Query: 62 ----DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPD 117 E+TV+V+A+T QR A+ A +LY ET ES+ +R A RKL L P D +P+ Sbjct: 74 ATAMTEKTVVVEALTAQRGNATAAEVLYSETEESIARRAYYAEQRKLANLARP--DNKPN 131 Query: 118 KKERRDLLRFKHGDS 132 KKERRDL RFK Sbjct: 132 KKERRDLHRFKSNQD 146 >UniRef50_B8GNB4 RNA-binding S4 domain protein n=7 Tax=Proteobacteria RepID=B8GNB4_THISH Length = 125 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 59/124 (47%), Positives = 75/124 (60%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 R+DKWLWAARF+KTRALA E + GGKVH G+R KP++ V L + +G + Sbjct: 1 MDSQRIDKWLWAARFFKTRALAAEAVSGGKVHVGGERVKPARAVRPGEHLRITRGQETWE 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V + + EQRRPA+EA LY E ES +RE A R+L PH D RPDK+ERR L Sbjct: 61 VEILGLNEQRRPAAEAQRLYAERPESRARREAEAEQRRLLHAATPHMDHRPDKRERRQLR 120 Query: 126 RFKH 129 + Sbjct: 121 KLLG 124 >UniRef50_B2UBP9 RNA-binding S4 domain protein n=11 Tax=cellular organisms RepID=B2UBP9_RALPJ Length = 132 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 70/129 (54%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + A VR+DKWLWAARF+KTR+ A + +E G+V N Q +P+K V++ + + Sbjct: 3 VSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVHAH 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V V A+ E R PAS A LY ET S KRE+ A R+L RP K++ Sbjct: 63 EQQWEVEVLALAEVRGPASVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTKRD 122 Query: 121 RRDLLRFKH 129 RR + + Sbjct: 123 RRRIDKLGG 131 >UniRef50_C9YFQ6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFQ6_9BURK Length = 319 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 1/119 (0%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 R+DKWLWAARF+KTR+LA + + G+V + G+ KP+K V+ TLT+ QG +RTV Sbjct: 3 STRIDKWLWAARFFKTRSLATDEVNLGRVQWEGRDVKPAKEVKAGDTLTIWQGKVKRTVE 62 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPD-RRPDKKERRDLL 125 V I+EQR PA A L+Y ET ESV++R A ++L+ RP K++RR L Sbjct: 63 VLQISEQRGPAPVAQLMYAETPESVQQRLAAAEQQRLSPEPAHTIAGGRPTKRDRRALQ 121 >UniRef50_Q0AD54 RNA-binding S4 domain protein n=3 Tax=Nitrosomonas RepID=Q0AD54_NITEC Length = 136 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 57/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 + ++R+DKWL+AARFYKTR+ A + +E G+V NG R KPS+I+ ++ L +R G Sbjct: 6 AQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLDIRIGP 65 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNA-LTMPHPDRRPDKKE 120 V V A++ QRR A+EA LLY+ET ES + RE +A K RP K+ Sbjct: 66 YHHRVKVLALSNQRRSATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGRPTKRV 125 Query: 121 RRDLLRFKHG 130 RRDL RF G Sbjct: 126 RRDLERFVDG 135 >UniRef50_C2MAE5 Heat shock protein 15 n=8 Tax=Bacteria RepID=C2MAE5_9PORP Length = 166 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 VR+D +LWA R +KTR++A++ G+V N +KP+K+V + +++R+ + V Sbjct: 5 VRIDSFLWAVRLFKTRSIAQDACRKGRVAINDVTAKPAKMVMMGDIISVRKPPVTLSFKV 64 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 T R A Y E+ E + L R + RP K+ERRDL +F Sbjct: 65 LQTTANRMGAKLVPE-YILNVTPPEQYELLELKRMSGYVDRAQGLGRPTKRERRDLEQF 122 >UniRef50_C6X0Q5 Ribosome-associated heat shock protein n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Q5_FLAB3 Length = 149 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW RFYKTR++A I+ ++ +K SK V L + +R+ + + V Sbjct: 1 MRIDKFLWCVRFYKTRSIAAAEIKKNRISVGNNVAKSSKEVTLGDVIKIRKNQIDYQIKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 I + R L E+ + E+ E + L + RP KK+RR + F Sbjct: 61 LQIPKSRMGPKLVPLHIEDKTDK-EQYEILKLRNLNQDYYRNRGEGRPTKKDRRSMDDFI 119 Query: 129 HGDS 132 GD Sbjct: 120 DGDG 123 >UniRef50_C1A9Y0 Heat shock protein 15 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Y0_GEMAT Length = 147 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 54/125 (43%), Positives = 75/125 (60%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 P VRLDKWLWAARFYKTRALA E I+GGK NG+R+K +K V+ + LRQG E Sbjct: 21 PVERVRLDKWLWAARFYKTRALAAEAIDGGKADVNGERAKRAKPVQAGDEVRLRQGPIEW 80 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + + ++ +R A A LYEET + +RE+++ + + D +P K++RR L Sbjct: 81 CLKILDVSARRGSAEIARQLYEETEDGRVRRERVSEHLRSMPTGFAYGDSKPGKRDRRAL 140 Query: 125 LRFKH 129 R K Sbjct: 141 RRLKG 145 >UniRef50_A0M418 Protein containing RNA-binding S4 domain n=18 Tax=Bacteroidetes RepID=A0M418_GRAFK Length = 139 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW R++KTR++A + GKV + KPSK V L +R+ + + Sbjct: 1 MRVDKFLWCVRYFKTRSIATNACKQGKVRLEDEILKPSKDVFPGDKLRVRKNQINYEIEI 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + + R A LY E EK+ L + RP KK+RRD+ + Sbjct: 61 LDLPKSRVGAKLV-NLYLHDITPKEAFEKLELLKYSKDYYRKKGTGRPTKKDRRDIDDWF 119 Query: 129 HGDSE 133 + Sbjct: 120 DNAGD 124 >UniRef50_B6R6S6 RNA-binding S4 n=3 Tax=Alphaproteobacteria RepID=B6R6S6_9RHOB Length = 133 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKI-VELNATLTLRQGND 62 +P +R+DKWLW AR K+R LA+++ G V N ++ +K V+ LT+ Sbjct: 5 EPQGSIRIDKWLWYARITKSRTLAQKLAVSGHVRLNKEKVSAAKAAVKPGDVLTITMPRR 64 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 + V + +R PA EA +LYE+ + +E A RP KK+RR Sbjct: 65 LLILKVLKLGTRRGPAPEAQMLYEDMSPPPPPKETQAPV-----AQREAGAGRPTKKDRR 119 Query: 123 DLLRFKH 129 + R + Sbjct: 120 QIARIRG 126 >UniRef50_A5EY77 Ribosome-associated heat shock protein n=2 Tax=Cardiobacteriaceae RepID=A5EY77_DICNV Length = 139 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 79/123 (64%), Gaps = 1/123 (0%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE-RT 65 VRLD+WLWAARF+KTR +A + I+ G+V NGQR+KP++ + + TLT+++ + Sbjct: 15 ETVRLDQWLWAARFFKTRPVAVQNIKNGRVLVNGQRAKPARTISVGDTLTIQKTPELCFE 74 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V A+ +R A A LY+ET S+ R+++AL ++L + P RRPDK+ERR L Sbjct: 75 VNVLALENKRLGAKLATALYQETEASIHNRQELALRQQLAKSLVQFPTRRPDKRERRALR 134 Query: 126 RFK 128 + Sbjct: 135 SLR 137 >UniRef50_B9XC61 RNA-binding S4 domain protein n=2 Tax=Verrucomicrobia RepID=B9XC61_9BACT Length = 125 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 VR+DKWLWA R +KTR+LA G V G KP++ V +N + R G+ Sbjct: 1 MDATQSVRIDKWLWAVRLFKTRSLAMAACRSGHVRVGGHPVKPAREVRINDVIEARTGDI 60 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 RTV V + QR A E+ + E EK P RP KK+RR Sbjct: 61 TRTVKVLGLLHQRVGAQAVKEHAEDLTPASE-YEKRKELVLEPMFYRPKGTGRPTKKDRR 119 Query: 123 DLLRF 127 + + Sbjct: 120 SMEKL 124 >UniRef50_C0YT05 Heat shock protein 15 n=2 Tax=Flavobacteriaceae RepID=C0YT05_9FLAO Length = 145 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW+ RFYKTR++A E I+ +V K SK V+ T+ +R+ + + V Sbjct: 1 MRIDKFLWSIRFYKTRSIAAEEIKKNRVSIGTSAVKSSKEVKEGDTIKIRKNQIDYKIKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 I + R A L ++ + E+ E + L + + RP KK+RR++ + Sbjct: 61 IQIPKSRIGAKLVPLHIQDVTDK-EQYELLKLRKMSQDYYRNKGEGRPTKKDRREMDEYV 119 Query: 129 HGD 131 D Sbjct: 120 GND 122 >UniRef50_C7I4L5 RNA-binding S4 domain protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I4L5_THIIN Length = 142 Score = 132 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 67/125 (53%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 RLDKWLWAAR+ KTRALA E G+V NG +KP+K V + L ++Q + Sbjct: 12 SAAVASQRLDKWLWAARWCKTRALAASQCELGRVWVNGAPAKPAKEVRIGDVLVIQQERE 71 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 R V V + QR+ A A LY ET S +RE+ A R+L+ RP K +RR Sbjct: 72 RREVEVLQVGLQRQSAPLAQALYRETEASRLQRERQAELRRLSPEPEAVRQGRPSKLDRR 131 Query: 123 DLLRF 127 +L R Sbjct: 132 ELQRM 136 >UniRef50_C7PRL2 RNA-binding S4 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRL2_CHIPD Length = 141 Score = 132 bits (332), Expect = 5e-30, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K K +VRLDK+LW+ R +K+R+LA E G+V NG K ++ V LN +R Sbjct: 10 KMKEVEKVRLDKYLWSIRIFKSRSLASAGCEAGRVKMNGVTVKAARNVALNDVYEIRTEG 69 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 + + V A+ R +EA Y + +K ++ A P RP KKER Sbjct: 70 RKWVIQVTALLANRVQYTEAIKFYNDITPEEDKAQE-RQASVFQTGKRPSKIGRPTKKER 128 Query: 122 RDLLRFKHGDSE 133 R+L F G+ + Sbjct: 129 RELDDFMGGEED 140 >UniRef50_B1Y782 RNA-binding S4 domain protein n=5 Tax=Burkholderiales RepID=B1Y782_LEPCP Length = 153 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 3/126 (2%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG--NDER 64 VRLDKWLWAARFYKTR+LA + I G+V N Q +K +++V L+++QG R Sbjct: 19 EGVRLDKWLWAARFYKTRSLAGDEIGHGRVMINQQLAKAARLVRCGDLLSVKQGNCPLPR 78 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREK-MALARKLNALTMPHPDRRPDKKERRD 123 + V A+++ R PA A LYEET ES +A RP K +RR Sbjct: 79 IIRVLALSDVRGPAPVARQLYEETEESRAAVATWLANRPLTVDPAQSITQGRPTKSDRRQ 138 Query: 124 LLRFKH 129 + ++ Sbjct: 139 ITEWQR 144 >UniRef50_A6G6M5 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G6M5_9DELT Length = 124 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M + P VR+DKWLWAAR +KTR+ A G V +G+ K SK V+ + + Sbjct: 1 MADAP-KSVRIDKWLWAARMFKTRSSASTACSAGHVKIDGESVKASKGVKPGDRIDVLTP 59 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 R + V A+ E+R PAS A LY + + +E+ ++ RP KKE Sbjct: 60 GGPRELEVVALGERRGPASVARTLYVDHTPAPPPKEE-----RVVVAERERGAGRPKKKE 114 Query: 121 RRDLLRFKH 129 R+L + + Sbjct: 115 LRELRKLRG 123 >UniRef50_D2NQJ7 Ribosome-associated heat shock protein n=6 Tax=Actinomycetales RepID=D2NQJ7_9MICC Length = 130 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 5/123 (4%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 RLD WLW+ R +KTR+LA + +GG V N +KPS+ ++ + +R ER Sbjct: 10 TSARLDLWLWSVRIFKTRSLAADECKGGHVRVNDAPAKPSQKLKKGDIVKVRYPGWERVF 69 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 V+ + +R A A YE+ + RP KKERR L Sbjct: 70 KVEKLLVKRVGAPIAVTCYEDLSGPRPAYLS-----MPPVAKRERGSGRPTKKERRALDE 124 Query: 127 FKH 129 + Sbjct: 125 LRG 127 >UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEU6_9RHIZ Length = 134 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 4/126 (3%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 R+D+WLW AR K+R LA+++I GKV N ++ KPS +V+ +TL G R+ Sbjct: 8 SSQRVDQWLWFARITKSRTLAQDLISRGKVRLNREKIDKPSTLVKPGDVITLVVGPAVRS 67 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKRE--KMALARKLNALTMPHPDRRPDKKERRD 123 + + I +R PA+EA L+ + + E ++A+ K +A+ P RP K++RR Sbjct: 68 LEIVGIGHRRGPATEAQSLFLDHTPPKVRPEAAEIAMQPKQSAV-RPEGSGRPTKRDRRQ 126 Query: 124 LLRFKH 129 + + K Sbjct: 127 IDKLKG 132 >UniRef50_Q2RYB5 RNA-binding S4 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB5_RHORT Length = 144 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 6/126 (4%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGNDERTV 66 R+DKWLW ARF KTR LA+ + G V G+ K + +V LTL G RTV Sbjct: 24 SQRIDKWLWYARFCKTRGLAQTLCAAGHVKREGESLVKAATLVRPGDRLTLVLGPLRRTV 83 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 +V+A +R PA EA LY+E E E++ + L+ P RP KK+RR L R Sbjct: 84 VVRAAGARRGPAPEARTLYDE----PEPAERLGDP-TMEGLSRPSGGGRPTKKDRRALDR 138 Query: 127 FKHGDS 132 ++ D Sbjct: 139 WRAEDE 144 >UniRef50_Q2P648 Heat shock protein 15 homolog n=13 Tax=Xanthomonadaceae RepID=Q2P648_XANOM Length = 135 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 69/124 (55%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ + A VRLD WLWAARF+KTR+LA+ +E GKV GQR KPS+ + L + +G Sbjct: 3 LELEQATTVRLDVWLWAARFFKTRSLAKNAVETGKVDVAGQRPKPSRTLRSGEQLRIDRG 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + + V A++ R A A LY E+ S E R + L R P+ +PDK+ Sbjct: 63 GEIFEITVAALSAVRGAAPVAQALYVESDSSREARAQWRLQRAAERTGYRAPEGKPDKRA 122 Query: 121 RRDL 124 RR + Sbjct: 123 RRLI 126 >UniRef50_C6Y288 RNA-binding S4 domain protein n=4 Tax=Sphingobacteriaceae RepID=C6Y288_PEDHD Length = 132 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 1/128 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++R+DK+LWA R +KTR+LA E + G+V + GQ KPS IV+ + +G + Sbjct: 1 MTEQEKLRIDKYLWAIRLFKTRSLATEACKAGRVKFKGQNLKPSAIVKPGDVYQVSKGIE 60 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 ++ + V + R A A Y++ VE+ L RP KK+RR Sbjct: 61 KKMIEVVELLYNRVEAKIAVTKYKDVT-PVEETHAFKSMFHAPTLKRDRGTGRPTKKDRR 119 Query: 123 DLLRFKHG 130 + G Sbjct: 120 ETDDLIGG 127 >UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0H9_HALNC Length = 140 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 69/123 (56%), Gaps = 2/123 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS-KIVELNATLTLRQGNDERTV 66 E R+D WLWAARF+KTR+LA IEGGKV NGQ K S K V + L++ +G + V Sbjct: 16 EQRVDTWLWAARFFKTRSLASTAIEGGKVAINGQPCKKSGKAVRIGDELSIERGETKWIV 75 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 V +++QR A+ A LY E+ E + +R K A + N L P +PD+ R L Sbjct: 76 TVTGLSKQRGSATVAQTLYSESPEHLAERLKKAEQNRQNHLMNPSRV-KPDQHTRILLRA 134 Query: 127 FKH 129 + Sbjct: 135 LRG 137 >UniRef50_Q31JR0 RNA-binding S4-domain protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JR0_THICR Length = 125 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 66/127 (51%), Gaps = 2/127 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 VR+DKWLWAARF+KTR +A + ++GGKV NG + KPSK + L + Q + + Sbjct: 1 MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVE 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V IT++R A A LY+ E + ++ L A RP K++RR + Sbjct: 61 VTVIGITDKRGSAEAAETLYQLDVEVLNQKTPSPLL--ALAGYREKGKGRPTKRDRRKIE 118 Query: 126 RFKHGDS 132 + + Sbjct: 119 QLSFNEE 125 >UniRef50_Q1NY04 RNA-binding S4 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY04_9DELT Length = 132 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A ++RLD WLWAARF+KTR LA + + GGKVH NG R K +++V + L +R+G T Sbjct: 5 AEKIRLDIWLWAARFFKTRTLAGQAVSGGKVHLNGGRVKAARLVGSDDLLEIRKGVLAFT 64 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH-PDRRPDKKERRDL 124 V V+ + QR A AA LYEE+ ES+ R+ + R+ A P P +P K++RR + Sbjct: 65 VTVRGTSRQRLAAPLAAELYEESPESLAARQAASQERRTAAKAGPQAPRGKPAKRDRRLI 124 Query: 125 LRFKHGDS 132 +F D Sbjct: 125 KKFIRRDE 132 >UniRef50_UPI000050FC77 heat shock protein Hsp15 n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC77 Length = 138 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + P VR+D WLW R +KTR LA + GG V GQR K ++ V + + +R+ Sbjct: 3 IDRSPGKHVRVDVWLWTTRMFKTRNLATQACRGGHVQVEGQRVKAAQKVSIGQEVRVRKA 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 E + R AS AA YE+ + + + R+ RP KK+ Sbjct: 63 GTEFIWKITGFIPTRPQASIAAQCYEDLTPPPDPALRGFVPRR------DKGMGRPTKKD 116 Query: 121 RRDLLRFKH 129 RR++ +F Sbjct: 117 RREMEKFLG 125 >UniRef50_A0K0Y7 RNA-binding S4 domain protein n=12 Tax=Actinobacteria (class) RepID=A0K0Y7_ARTS2 Length = 127 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 7/129 (5%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + PA VR+D WLWA R YKTR+ A G V NG +K S+ + T+ +RQ Sbjct: 4 LPSAPAT-VRIDAWLWAIRAYKTRSAATAACRAGHVRLNGNPAKASQSLVPGDTVRVRQP 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 ER + V+ + +R A AA + + + L ++ RP KK+ Sbjct: 63 GYERILEVRRLIAKRVGAEAAAHCFTDHTPPRPVAPALGLPQR------DRGTGRPTKKD 116 Query: 121 RRDLLRFKH 129 RR++ R + Sbjct: 117 RREMERLRG 125 >UniRef50_C7LE02 S4 domain protein n=38 Tax=Rhizobiales RepID=C7LE02_BRUMC Length = 137 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSK-IVELNATLTLRQ 59 M + A R+DKWL+ AR K+R+LA ++ GGKV N + + + V++ LT+ Sbjct: 14 MAAEKAARQRIDKWLFFARVVKSRSLAAKLAVGGKVRVNRDKIEQAAYQVKVGDVLTITL 73 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 V A E+R PA EA LLYE+ + S + A RP KK Sbjct: 74 DRRILVYKVLAPGERRGPAPEAQLLYEDLSPSPAASTETAQ--------RESGAGRPTKK 125 Query: 120 ERRDLLRFKHG 130 ERR++ R + G Sbjct: 126 ERRNIDRLREG 136 >UniRef50_Q0S6G3 Ribosome-associated heat shock protein n=7 Tax=Actinomycetales RepID=Q0S6G3_RHOSR Length = 144 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + VR+D W WA R +KTR+ A G V NG +KP++ V+ + +R Sbjct: 20 ISGTDPASVRVDSWTWATRLFKTRSAAAAACRSGHVRVNGTTAKPAQPVKAGDEVRVRAA 79 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 ER V V +R A A Y + RE +A + RP K+E Sbjct: 80 GVERIVEVVRPITKRVGAVVAVECYTDNTPPPPPREVLA-----SIPQRDRGAGRPTKRE 134 Query: 121 RRDLLRFKH 129 RR++ R + Sbjct: 135 RREMDRLRG 143 >UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID=A3TX18_9RHOB Length = 130 Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 9/134 (6%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M E+P + RLDKW+W ARF K+R+LA ++ GG V NG R+ KPS V+ LT Q Sbjct: 1 MAEQP-TKFRLDKWIWQARFVKSRSLAAGLVTGGHVRVNGMRAAKPSHGVQPGDVLTFPQ 59 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 G+ R V + A +R PA+EA LYE+ + EK + AR + RP K+ Sbjct: 60 GDRIRVVRILAPAARRGPAAEAQALYEDMSPPEEKTQIPQGAR-------NEGNSRPTKR 112 Query: 120 ERRDLLRFKHGDSE 133 +RR L ++ G + Sbjct: 113 DRRKLDLYRKGMGD 126 >UniRef50_Q169A4 Heat shock protein, putative n=22 Tax=Rhodobacterales RepID=Q169A4_ROSDO Length = 125 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 A ++R+DKWLW RF+KTR+LA ++ G V NG R+ K S +V LT QG+D R Sbjct: 2 ADKLRIDKWLWHGRFFKTRSLAATVVASGAVRVNGTRTQKRSHMVVSGDVLTFPQGDDIR 61 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + V+A+ +R PA EA LY + + E+R + + + RP KK+RR L Sbjct: 62 VIRVEALGTRRGPAPEARALYTDLSPP-ERRTRDETPKNPSF----EGKGRPTKKDRRTL 116 Query: 125 L 125 Sbjct: 117 D 117 >UniRef50_C0BJS5 RNA-binding S4 domain protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJS5_9BACT Length = 130 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D++LW R +K+R LA + + G+V NGQ+ KPS+ + + + +R+ RT V Sbjct: 1 MRVDQYLWCIRLFKSRNLASTICKKGQVKVNGQKVKPSREILPHDQIEVRKDQLWRTFEV 60 Query: 69 KAITEQR-RPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 I + R P A + E+T SV E L ++ RP KK+RRDL Sbjct: 61 LDIPKSRMGPKLVALYVIEKTDPSV--FENQELQNLTGSIRREEGTGRPTKKDRRDLD 116 >UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID=Q28M35_JANSC Length = 108 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 14/120 (11%) Query: 11 LDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVIVK 69 +DKWLW ARF+KTR+LA + G V N + +K S + LT QGN R V + Sbjct: 1 MDKWLWQARFFKTRSLAARQVSAGHVRVNATKITKASTQISPGDVLTFPQGNTIRVVKID 60 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKH 129 A+ ++R PA EA LY + + P RP KK+RRDL F+ Sbjct: 61 ALAKRRGPAPEAQTLYIDMTPEAAPQ-------------SPRVGPRPTKKDRRDLDAFRE 107 >UniRef50_C5C3U9 RNA-binding S4 domain protein n=12 Tax=Actinomycetales RepID=C5C3U9_BEUC1 Length = 122 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A VR+D WLWA R K+R+ A G V NG+R+KP+ V + ++ +R G+ ER Sbjct: 2 AESVRVDAWLWAVRILKSRSAASTACRAGHVQINGERAKPASPVRVGDSVRVRGGHAERV 61 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 + V+ + +R A A Y + + RE ++ RP K+ERR L Sbjct: 62 LEVRRLIVKRVGAPVAVECYVDHSPPPPPREI-----RIQVAIRDPGTGRPTKRERRQLD 116 Query: 126 RFKH 129 R + Sbjct: 117 RLRG 120 >UniRef50_Q47PE2 RNA-binding S4 n=1 Tax=Thermobifida fusca YX RepID=Q47PE2_THEFY Length = 147 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 6/120 (5%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D+WLWA R KTR+ A + G V N + +KP+ V++ + R R V V Sbjct: 31 RVDRWLWAVRLTKTRSDAAQACRAGHVRVNDKPAKPATSVKVGDRVRARVNGVTRIVEVT 90 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKH 129 I E+R A A Y + V + +AR+ P RP K+ERR L R + Sbjct: 91 HIIEKRVGAPIATRCYIDHTPVVPPELAVPVARR------PRGAGRPTKRERRQLDRLRG 144 >UniRef50_B5JNJ8 S4 domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNJ8_9BACT Length = 157 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K +VR+D+WLWA R +KTR A E GGKV +G+ KPS++V + + + + Sbjct: 29 LESKDLDKVRIDRWLWAVRIFKTRGDAVEACRGGKVEIDGENVKPSRMVRIGEKVDVMKD 88 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 R V + +R A A ++ E+ E L RP K+E Sbjct: 89 GVLREFRVVGLLMKRVGAKVVAAYVQDLTPP-ERLEVRRETLAQTILKREAGAGRPTKRE 147 Query: 121 RRDLLRF 127 RRD+ R Sbjct: 148 RRDIERL 154 >UniRef50_B0MVH7 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVH7_9BACT Length = 132 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 +RLDK+LWA R +KTR+ A E I +V N +KPS+ V + + +++ Sbjct: 1 MEAIRLDKYLWAVRIFKTRSDAAEAIRQNRVLVNDAYAKPSREVRIGDRIAVKRMPVTYL 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V R+PA Y + +K+ + R+ + RP KKERR+L Sbjct: 61 FEVVGYVSSRQPAKNVPD-YCRNITPQSELDKLNIPRETVFVFRDRGTGRPTKKERRELD 119 Query: 126 RFK 128 Sbjct: 120 SLM 122 >UniRef50_A7HTT3 RNA-binding S4 domain protein n=10 Tax=Alphaproteobacteria RepID=A7HTT3_PARL1 Length = 131 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 3/123 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 R+D+WLW ARF K+R+LA +++ G++ +GQR K S++V LT G R + Sbjct: 10 QRIDRWLWYARFLKSRSLAATLVQSGRLRLSGQRISKASRLVRAGDILTFPLGPHIRVIK 69 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 + + +R PA EAALLYE+ K R+ A + P RP KKE R Sbjct: 70 ILHLGTRRGPAPEAALLYEDLDPPSPLPPKA--DRETAAESRPAGTGRPTKKEGRRTATL 127 Query: 128 KHG 130 K G Sbjct: 128 KSG 130 >UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales RepID=A0QXX1_MYCS2 Length = 127 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 R+D+WLWA R KTR A GG V N + +KPS V + R G+ R Sbjct: 7 MESTRIDRWLWAVRLTKTRPDAAAACRGGHVRVNDRVAKPSTTVAPGDEVRARLGDRTRI 66 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V + ++R A++A Y + + ++ + +A RP K++RR L Sbjct: 67 VEVVRVIQKRVGAADAVTCYLDRSPALPPAVTVPVA------VRDRGAGRPTKRDRRLLD 120 Query: 126 RFKHGD 131 +++ G Sbjct: 121 KWRSGQ 126 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQG 60 PA RLDKWL+ AR K+R+LA++ IE G V NG+R ++ S ++ L + Sbjct: 6 PSAPATRQRLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSSAQIKAGDMLEVSLE 65 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + + V +R P EA LLYE+ + T RP K+E Sbjct: 66 RRDLVLRVLLPGSRRGPYEEARLLYEDLTPAAPA----GKPTLYEQATRDRGAGRPTKRE 121 Query: 121 RRDLLRFKHG 130 RR+ R + G Sbjct: 122 RRETDRLRPG 131 >UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaproteobacteria RepID=A4WST9_RHOS5 Length = 100 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQ 59 M +RLDKWL ARF+KTRALA ++E G+V NGQ +KP++ V LT Q Sbjct: 1 MAAADRATIRLDKWLVQARFFKTRALASALVEAGRVRLNGQHVAKPAQPVGEGDMLTFPQ 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMA 99 G R + V A+ +R PASEA LY++ + Sbjct: 61 GGRIRLIRVVAVGVRRGPASEARGLYDDLDTPPAAASPLE 100 >UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IUH9_RHOCS Length = 115 Score = 110 bits (277), Expect = 9e-24, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 + +RLDKWLW ARF KTR LA + G + G K V+ LT G Sbjct: 16 ADLAQGRLRLDKWLWYARFVKTRGLAARLCASGAIRIGGAHVTKAHHRVKPGDVLTFPLG 75 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEK 94 R + V+A+ +R PA EA LYE+ + + Sbjct: 76 PHIRVIRVRALAARRGPAPEARTLYEDLSPPTPE 109 >UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI2_RHOVA Length = 105 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGN 61 + E RLDKWLW ARF K+R+LA ++IE G + N QR K + ++ LT Sbjct: 1 MTASDEQRLDKWLWHARFVKSRSLAAKLIEEGCIRVNRQRVVKAATCIKCGDVLTASLFG 60 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNA 106 D R + ++ I E+R P EAA LY E S + + +A Sbjct: 61 DVRVIEIRGIGERRGPPDEAAALYCERLGSPPSTSRNGEGGESDA 105 >UniRef50_UPI000174635B protein containing RNA-binding S4 domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174635B Length = 125 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 2/122 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R D +L R +KTR+LA + G V GQ KP++ ++L L +++G+ V V Sbjct: 1 MRADLYLHHVRIFKTRSLATQACTRGLVQIGGQPMKPARELKLGEVLDIQRGDLSLVVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP-DRRPDKKERRDLLRF 127 A R AS L E+ V+ +K A AR+ L PH +PDKK+ R + Sbjct: 61 IAFPTTRVGASLVKLFMEDLT-PVQNYQKAAEARREKVLLTPHALAAKPDKKQLRLIREL 119 Query: 128 KH 129 Sbjct: 120 ME 121 >UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=A1B330_PARDP Length = 89 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M ++ A +RLD+WL AR +KTR LA + I G + NGQ KP++ V T+T+ Sbjct: 1 MSQEAAGAIRLDRWLHHARLFKTRTLAADAIGAGGIRVNGQPCSKPAQAVRGGDTVTVSA 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEET 88 R + V+ + E+R PASEAA LYEE Sbjct: 61 HGRVRVLRVRLLGERRGPASEAATLYEEL 89 >UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=B1LWX7_METRJ Length = 102 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERT 65 RLDKWLW ARF +TR+LA + G V NG R++ P+K + + +T+ + Sbjct: 4 DRQRLDKWLWFARFARTRSLAARLASDGFVRVNGSRAENPAKAIGVGDVVTVAAPHATLA 63 Query: 66 VIVKAITEQRRPASEAALLYEETA 89 V V + +R PA EA LLY++ + Sbjct: 64 VRVLGLGLRRGPAPEARLLYDDLS 87 >UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiales RepID=B8ERF0_METSB Length = 104 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 A RLDKWLW AR KTR LA ++ G V N +R P+K V LT+ R Sbjct: 2 AATQRLDKWLWFARVTKTRTLAARLVLDGHVRLNARRIDAPAKPVAAGDVLTVALERQVR 61 Query: 65 TVIVKAITEQRRPASEAALLYEETAESV 92 + V +R P EA LL+EE +ESV Sbjct: 62 VLRVLQPGARRGPFPEARLLFEELSESV 89 >UniRef50_Q0AMA8 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=Q0AMA8_MARMM Length = 109 Score = 97.9 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-----GQRSKPSKIVELNATLTL 57 + +R+D WLW AR +KTR+LA +++ G++ + SKPS +V TLTL Sbjct: 2 SEAGTGIRIDVWLWQARQFKTRSLATAIVQKGRLRITSGGLTRKISKPSTLVRAGDTLTL 61 Query: 58 RQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALAR 102 + + + A+ +R PASEA LY ++ A R Sbjct: 62 PRNGGIVRLEILALGTRRGPASEAQALYRLIDDAQAATRPTAQTR 106 >UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q2GC52_NOVAD Length = 96 Score = 96.4 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 +R+DK+LW RF TR LA+ +E G + NG+R + S V L L L + + Sbjct: 1 MRIDKFLWFTRFAGTRNLAQGWVEDGHIRLNGRRIERCSADVRLGDVLVLPMRSRVTVIE 60 Query: 68 VKAITEQRRPASEAALLYEETAES 91 V A+ +R PA EA Y Sbjct: 61 VLALPARRGPAPEAQACYRVLDGP 84 >UniRef50_Q11CX7 RNA-binding S4 n=1 Tax=Chelativorans sp. BNC1 RepID=Q11CX7_MESSB Length = 95 Score = 96.0 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 R+DKWL+ AR K+R+LA ++ + G+V N ++ + S++V LT+ Sbjct: 1 MATDERQRIDKWLFFARVVKSRSLAAKLAQAGRVRVNREKINEASQLVRPGDVLTITLDR 60 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKRE 96 V A +R PA EA LLYE+ ++ +E Sbjct: 61 RILVYRVLAPGLRRGPAEEARLLYEDLTQTPAIKE 95 >UniRef50_B4RFP2 Ribosome-associated heat shock protein n=6 Tax=Caulobacteraceae RepID=B4RFP2_PHEZH Length = 101 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-----QRSKPSKIVELNATLTL 57 R D WLW ARF+KTR+LA + ++ G+V + KP++ V++ L Sbjct: 1 MSDETACRADVWLWRARFFKTRSLAAKFVDEGRVRLTRLGHETRLDKPARPVKVGDQLVF 60 Query: 58 RQGNDERTVIVKAITEQRRPASEAALLYEETAESVE 93 G V V+A+ E+R P +EA LY A + Sbjct: 61 ALGGRLIAVTVEAMGERRGPPAEARTLYSTLAADPD 96 >UniRef50_A9E5L5 Heat shock protein 15 n=1 Tax=Kordia algicida OT-1 RepID=A9E5L5_9FLAO Length = 113 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 27 AREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYE 86 A + G V NG KPS+ V + +R+ R + V I R A +Y Sbjct: 2 ATTACKKGHVKINGATVKPSRDVYATDKIEVRKDQITRHLTVLDIPPSRVGAKLV-DIYR 60 Query: 87 ETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 E E + L + RP KK+RR++ + Sbjct: 61 VDTTPKENFEHLELLKFSKDHYRKKGMGRPTKKDRREIDEY 101 >UniRef50_A3VNF6 S4 domain protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VNF6_9PROT Length = 110 Score = 92.9 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMI--EGGKVHYNGQR---SKPSKIVELNATL 55 + + +RLD+WLW AR +KTRALA ++ +G +V G+ +KPS + TL Sbjct: 3 LPDLTTPSLRLDRWLWHARIFKTRALAARIVSQKGARVTRAGKTQKTTKPSFAIRPGDTL 62 Query: 56 TLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVE 93 + Q + V A+ ++R PA EA LY + +S Sbjct: 63 AIVQAQRAIILEVVALGDRRGPAREAQTLYRISDDSPA 100 >UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N6H3_ERYLH Length = 103 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 5/94 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 +R+D L RF+KTR+ AR +IE G + NG+R + S V LT+ G + Sbjct: 1 MRIDLVLCRLRFFKTRSAARNLIEAGHLRANGRRVVQVSHPVAEGDILTVPLGKSVVVIE 60 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALA 101 + + E+R PA+EA Y +++ RE+ ALA Sbjct: 61 ILHLPERRGPAAEARECYR----ALDPREQSALA 90 >UniRef50_A3UGK9 S4 domain protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UGK9_9RHOB Length = 94 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 5/90 (5%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHY--NGQRS---KPSKIVELNATLTLRQG 60 +R D WL+ AR YK+R LA +MIE G V NGQ + KP+ V L +R+ Sbjct: 5 GESMRCDVWLFRARLYKSRGLAGQMIEKGAVRIDRNGQVTRLTKPAAPVRPGDCLVIRRD 64 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAE 90 D + V+A+ E+R PA EA Y E Sbjct: 65 ADPLRLTVRALPERRGPAPEAQSCYSLETE 94 >UniRef50_B0SXM9 RNA-binding S4 domain protein n=1 Tax=Caulobacter sp. K31 RepID=B0SXM9_CAUSK Length = 99 Score = 91.3 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 9/95 (9%) Query: 1 MKEKPAVE----VRLDKWLWAARFYKTRALAREMIEGGKVHYNG-----QRSKPSKIVEL 51 M ++ A R D WLW ARF+KTR+LA +E G++ + KPS+ + L Sbjct: 1 MSDEDAGSDPGHCRADVWLWRARFFKTRSLAGRFVEEGRIRLTRAGAESRVDKPSRGLRL 60 Query: 52 NATLTLRQGNDERTVIVKAITEQRRPASEAALLYE 86 L G V V + E+R PA+EA LYE Sbjct: 61 GDGLVFAIGGRIVAVRVVGLGERRGPATEARELYE 95 >UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ Length = 98 Score = 91.3 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGND 62 + A RLDK+L+ ARF KTR +A ++ G V N Q + KP + LTL Sbjct: 10 EDAAWQRLDKFLFHARFVKTRGVAARLVAAGGVRINRQITEKPHARLRPGDVLTLALPQG 69 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAE 90 + V V A+ +R PA+EA LYE AE Sbjct: 70 VQVVRVVALGARRGPAAEARRLYEVVAE 97 >UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G1N8_9RHIZ Length = 161 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDE 63 A R+DKWL AR KTR++A++++E KV N ++ P++ V + LT+ + Sbjct: 18 EASSQRIDKWLVFARVVKTRSIAQQLVEAKKVRLNKEKIDNPARNVRVGDVLTISYSSRV 77 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP 112 V +R +A LYE+ V + ++ + R + P Sbjct: 78 HVFQVLGFAGRRGSPGDAQALYEDLNAPVVEVDQGSSDRAEADEIVAAP 126 >UniRef50_B4WYP3 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WYP3_9GAMM Length = 431 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 3/84 (3%) Query: 32 EGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAES 91 EGGK+H +G R+KPSK V+ T+T+ +G + VIV+ ++ +R PA A LYEET ES Sbjct: 2 EGGKIHIDGSRTKPSKAVQPGQTVTITKGTEHFEVIVRDLSSKRGPAKVAQTLYEETPES 61 Query: 92 VEK---REKMALARKLNALTMPHP 112 V K AL+ A+ P Sbjct: 62 VAKWDSYSGRALSGTPAAIGNPQG 85 >UniRef50_Q0BWQ4 S4 domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BWQ4_HYPNA Length = 95 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 5/93 (5%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-----GQRSKPSKIVELNATLTLRQ 59 +RLD WLW ARF+KTRALA + G V + + KP V + +T + Sbjct: 3 EEGSLRLDIWLWRARFFKTRALATAHVRGRGVRLSHLGQTRKTDKPGASVNVGDVVTFGK 62 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESV 92 +V V + E+R PA EA LY Sbjct: 63 AERIYSVEVLDLGERRGPAEEARALYRPLEAEP 95 >UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis RepID=Q1GPH7_SPHAL Length = 116 Score = 88.3 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDE 63 A +RLDK LW RF ++R++A+ M+ G + +G+R + S V+ ATL L G Sbjct: 6 AAGSIRLDKLLWFLRFARSRSIAQAMVAAGHIRLDGRRVSRSSCAVQAGATLVLPVGERI 65 Query: 64 RTVIVKAITEQRRPASEAALLYEETAES 91 + + ++ +R PA+EA Y + + Sbjct: 66 EVIRLVSLPLRRGPATEAQACYVRLSAT 93 >UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4_NITWN Length = 97 Score = 87.9 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERT 65 RLDKWLW AR + R A ++E G+V NG R + P + + LT+R R Sbjct: 5 ERQRLDKWLWHARVVRARTQAASLVEAGRVRVNGLRQTSPGHPLRIADVLTIRLDRGIRI 64 Query: 66 VIVKAITEQRRPASEAALLYEETAES 91 + + E+R + A LY++ + + Sbjct: 65 LRITGFAERRGGPTVARALYDDLSNA 90 >UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9N3_9SPHN Length = 85 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 +R+D+ L RF +TR+ AR++++ G + NG+R +PS+ + + LTL G + + Sbjct: 1 MRIDRLLCTLRFVRTRSAARKLVDQGHIRRNGERVLRPSRDIAVGDVLTLPVGRHVKLIE 60 Query: 68 VKAITEQRRPASEAALLYEETAE 90 V + E+R P EA Y E Sbjct: 61 VLQLPERRGPPREAQECYRELDP 83 >UniRef50_Q6AE36 Ribosome-associated heat shock protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AE36_LEIXX Length = 118 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 VR+D W WA R +KTR+ A + + G + NG R+KP++ V++ + G E+ Sbjct: 10 ASVRVDSWTWAVRLFKTRSSASDACKAGHLKVNGDRAKPAQPVKVGDEIRALAGGSEKVY 69 Query: 67 IVKAITEQRR 76 I + + +R Sbjct: 70 IARRLIVKRV 79 >UniRef50_A3DIS8 RNA-binding S4 n=7 Tax=Clostridiales RepID=A3DIS8_CLOTH Length = 79 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R LA E E G+V NG+ +KP V++ + +R GN V V Sbjct: 1 MRIDKYLKVSRLIKRRTLANEACEQGRVLINGKVAKPGTEVKVGDIIEIRFGNSTTKVEV 60 Query: 69 KAITEQRRPAS 79 AI E A Sbjct: 61 TAINEHVLKAE 71 >UniRef50_Q9KGI8 Uncharacterized protein BH0073 n=176 Tax=Firmicutes RepID=Y073_BACHD Length = 88 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ E G++ NG +K +V+ L +R G TV + Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVCEQGRITVNGNVAKAGTVVKEGDELVIRFGQKLVTVEI 60 Query: 69 KAITEQRRPASEAALLYE-ETAESVEKRE 96 + E R EA+ LYE + E + K E Sbjct: 61 TNVKETVRK-EEASTLYEVKKEEPISKSE 88 >UniRef50_B8FZC2 RNA-binding S4 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FZC2_DESHD Length = 90 Score = 81.7 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R +A+++ EG K+ NG+ +KPS V+ +TL V V Sbjct: 1 MRIDKYLKVSRLIKRRTVAKDICEGEKIRLNGRIAKPSAEVKPGDIVTLEMARHLLEVRV 60 Query: 69 KAITEQRRPASEAALLYE 86 + A+EA LLYE Sbjct: 61 LSTPNS-AKANEAHLLYE 77 >UniRef50_A8RA49 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RA49_9FIRM Length = 94 Score = 81.7 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L AR K R++++E+ + +V+ NG+ +KP+ V++ + + G E TV V Sbjct: 1 MRLDKYLKTARILKRRSVSKELADNERVYVNGRVAKPATDVKIGDIVKVIFGYRELTVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALA 101 A+ +Q ++AAL++E E + K++ + Sbjct: 61 LALPKQ-VNKNDAALMFEVVEEKLIKKDSLVDR 92 >UniRef50_P37557 Uncharacterized protein yabO n=25 Tax=Bacteria RepID=YABO_BACSU Length = 86 Score = 81.3 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ + G++ NG ++K S V+ LT+R G TV V Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRFGQKLVTVQV 60 Query: 69 KAITEQRRPASEAALLYEETAE 90 + + EAA +Y E Sbjct: 61 NELKDTT-KKEEAANMYTILKE 81 >UniRef50_C6XPI0 RNA-binding S4 domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XPI0_HIRBI Length = 106 Score = 80.6 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHY--NGQR---SKPSKIVELNATLTLRQ 59 +R+D +L RF+KTRALA I V NG+ +KP+ + + ++ Sbjct: 10 ETDRMRVDLFLHRIRFFKTRALATSQITKKNVRISRNGETRRTNKPAANIFVGDIVSFYC 69 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKRE 96 + T+ V + +R PA EA Y + +++R+ Sbjct: 70 NKEIVTLSVLNLPLRRGPAPEAQKCYTLIEDQLKERD 106 >UniRef50_C8WQS2 RNA-binding S4 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQS2_ALIAD Length = 100 Score = 78.6 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+++ + G+V NG+ K + V + + ++ GN TV+V Sbjct: 1 MRLDKFLKVSRLIKRRTLAKKICDAGRVLVNGRPGKAATDVAVGDEIVIQYGNKTVTVVV 60 Query: 69 KAITEQRRPASEAALLYE 86 + + E R EAA LY+ Sbjct: 61 RRLAENPR-RDEAASLYD 77 >UniRef50_B7AVE5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVE5_9BACE Length = 90 Score = 75.5 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++ V +RLDK+L +R K R +A + + G+V N + K S V+ + ++ GN Sbjct: 2 DRNGVSMRLDKYLKVSRLIKRRTVANDACDAGRVIVNDKVVKASYDVKEGDVIEIQFGNK 61 Query: 63 ERTVIVKAI 71 V V I Sbjct: 62 SVKVRVTDI 70 >UniRef50_Q03N19 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=84 Tax=Firmicutes RepID=Q03N19_STRTD Length = 91 Score = 74.0 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + G++ NG +K S +++ + +R GN TV V Sbjct: 1 MRLDKYLKVSRIIKRRPVAKEVADKGRIKVNGVLAKSSTDLKIGDQVEVRFGNKLLTVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMA 99 + + +AA +YE +E+ + ++ Sbjct: 61 LEMKDST-KKEDAAKMYEIISETRIEVDEQE 90 >UniRef50_C5RJP4 RNA-binding S4 domain protein n=2 Tax=Clostridium RepID=C5RJP4_CLOCL Length = 92 Score = 74.0 bits (181), Expect = 2e-12, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E E G+V NG+ +KPS V+ + + + N + Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEACESGRVIINGKVAKPSSEVKEDDVIEILYANRSLKAKI 60 Query: 69 KAITEQRRPASEAALLYE 86 I A +YE Sbjct: 61 VNIANH-VTKDNAKGMYE 77 >UniRef50_A9NE18 S4 RNA-binding domain protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE18_ACHLI Length = 82 Score = 73.6 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 40/64 (62%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R++A+++ + +++ NGQ +KP K V++ + L G T+ + Sbjct: 1 MRIDKFLKVSRLIKRRSVAKDVADADRIYVNGQLAKPGKTVKVGDQVQLHLGLKIITIEI 60 Query: 69 KAIT 72 ++T Sbjct: 61 TSLT 64 >UniRef50_A7H4E7 S4 domain protein n=30 Tax=Epsilonproteobacteria RepID=A7H4E7_CAMJD Length = 81 Score = 73.6 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L K RA++ +M + G V NG K SK V++ +TL + V Sbjct: 1 MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVGDIITLHFTEYTQKYKV 60 Query: 69 KAITEQRRPASEAALLY 85 A+ + A Y Sbjct: 61 LALPSTKSIPKNAQNEY 77 >UniRef50_C5EYQ4 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=C5EYQ4_9HELI Length = 83 Score = 73.2 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L A K R +A++MIE G V +G K S+ V++ + + R V Sbjct: 1 MRIDKFLNAVNITKRRTIAQDMIENGVVKISGISVKASRDVKVGDVIEIAFLEKPRFFEV 60 Query: 69 KAITEQR-RPASEAALLYEE 87 I Q+ +E+ L Y+E Sbjct: 61 LQIPTQKTIKKNESHLYYKE 80 >UniRef50_P64406 Uncharacterized protein spr0007 n=42 Tax=Bacteria RepID=Y007_STRR6 Length = 88 Score = 73.2 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + G++ NG +K S +++N + +R GN V V Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKR 95 + + +AA +YE +E+ + Sbjct: 61 LEMKDST-KKEDAAGMYEIISETRVEE 86 >UniRef50_B0VF38 RNA-binding S4 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VF38_9BACT Length = 86 Score = 72.1 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D L KTR++A+ + V NG+ +K S V+ + R N E + + Sbjct: 1 MRIDVLLHKLCLTKTRSIAKNACDKNLVLINGKPAKASADVKAGDIIIFRLYNAEHEIRI 60 Query: 69 KAITEQRRPASEAALLYE 86 I E +A YE Sbjct: 61 TQIPEGNVAKKDATRYYE 78 >UniRef50_Q046E2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=37 Tax=Firmicutes RepID=Q046E2_LACGA Length = 91 Score = 71.7 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K + ++R+DK+L +R K R +A+EM + G+V N + K S V++ + + G Sbjct: 5 KGREENKMRIDKFLKVSRLVKRRTVAKEMADQGRVKVNERVVKSSYDVKVGDVIEIGFGT 64 Query: 62 DERTVIVKAITEQRRPASEAALLYE 86 + V + E + A EA+ LYE Sbjct: 65 KQLKARVLDLRETTKKA-EASDLYE 88 >UniRef50_B1ZVL5 Heat shock protein 15 n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVL5_OPITP Length = 94 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 38 YNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREK 97 GQR+KP++ V + +RQG RT+ V + R A+ A + + + EK Sbjct: 3 IGGQRAKPAREVHAGELVCVRQGLITRTLRVVDVPRSRVGAALVARFCADLTPA-AEFEK 61 Query: 98 MALARKLNALTMPHPDRRPDKKERRDLLRFKH 129 R + L RP K++RR L + Sbjct: 62 AREQRLQHMLAREKGLGRPTKRDRRALDQLLG 93 >UniRef50_A0NWS1 RNA-binding S4 n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NWS1_9RHOB Length = 92 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 45 PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKL 104 SK V LT+ + + A+ +R P EA LYE+ + Sbjct: 9 ASKTVRTGDVLTIGLERRILVLKILALGSRRGPYEEARKLYEDLS---PPPPPKDAPPPA 65 Query: 105 NALTMPHPDRRPDKKERRDLLRFKHGD 131 RP K+ERR + F+ GD Sbjct: 66 APAQRDAGAGRPTKRERRKIDAFRSGD 92 >UniRef50_Q9ZIM1 Uncharacterized protein Lmo0216 n=117 Tax=Bacteria RepID=Y216_LISMO Length = 88 Score = 69.0 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ E G++ NG +KP V+ L +R G T + Sbjct: 1 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRFGPKIVTAKI 60 Query: 69 KAITEQRRPASEAALLYEETAESV 92 + + E +A +Y E Sbjct: 61 ERLEEN-AKKEQATEMYTIIKEER 83 >UniRef50_B9DKZ3 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DKZ3_STACT Length = 88 Score = 68.2 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ + G+V NG +K V++ + + + TV Sbjct: 1 MRLDKYLKVSRLIKRRTLAKEVSDQGRVQVNGNTAKAGTDVKVGEKIVITLPSRIVTVRT 60 Query: 69 K 69 + Sbjct: 61 R 61 >UniRef50_D2MMW4 S4 domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MMW4_9FIRM Length = 93 Score = 68.2 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R +++E+ ++ N + KPS V++ L ++ G+ V + Sbjct: 1 MRVDKFLKISRILKRRTISKELALHQRIKINDRIVKPSHEVKIGDILEVQYGSRILGVRI 60 Query: 69 KAITEQRRPASEAALLYEETAESV 92 +I E+ A +YE E Sbjct: 61 LSIQEK-VKKETAMEMYEVVFEKR 83 >UniRef50_C8P218 S4 domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P218_ERYRH Length = 90 Score = 67.8 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 39/66 (59%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + +V NG+++KPS V L + +R + + V Sbjct: 1 MRLDKYLKVSRIIKRRTVAKELADDDRVFINGKKAKPSSEVSLEDEIEIRFEHRHIKIEV 60 Query: 69 KAITEQ 74 ++++ Sbjct: 61 TFLSDK 66 >UniRef50_D1AVF5 RNA-binding S4 domain protein n=3 Tax=Fusobacteriaceae RepID=D1AVF5_STRM9 Length = 83 Score = 67.1 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L R K R +A E+ + G V NG K V+ + +R N V V Sbjct: 1 MRLDKFLKITRVVKRRTIANELCDSGNVSVNGDIKKALYSVKDGDRIDIRFYNRNFVVNV 60 Query: 69 KAIT 72 + Sbjct: 61 LKLP 64 >UniRef50_B5EL81 RNA-binding S4 domain protein n=3 Tax=Acidithiobacillus RepID=B5EL81_ACIF5 Length = 87 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 39/69 (56%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A +R+D +L +R K R+LA+E+ + G V NG+ +K +V+++ LT+ + Sbjct: 2 AGHLRIDLFLKMSRLIKRRSLAKEICDAGCVQINGRVAKAGALVQVDDVLTMDIRDRLLR 61 Query: 66 VIVKAITEQ 74 V V I ++ Sbjct: 62 VRVLRIPQR 70 >UniRef50_Q9ZJJ0 Uncharacterized protein jhp_1318 n=14 Tax=Helicobacter RepID=YE23_HELPJ Length = 84 Score = 67.1 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L + K R LA +M G V NG +KPSK V+ ++L + Sbjct: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKPSKEVKTGDVISLHYLKGIEEYTI 60 Query: 69 KAITE 73 I Sbjct: 61 LQIPT 65 >UniRef50_B9TH32 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TH32_RICCO Length = 83 Score = 66.7 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 38/80 (47%) Query: 50 ELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTM 109 + ++++ + + V V A++ RR A EAALLY ET ES R++ Sbjct: 2 KPGMRVSIKNKDMQIEVEVLALSNVRRGAPEAALLYRETDESQRLRQQAQETGADQYAER 61 Query: 110 PHPDRRPDKKERRDLLRFKH 129 RP K++ R++ RF Sbjct: 62 DRGLGRPTKRQMREIQRFTG 81 >UniRef50_A6QAM8 RNA-binding S4 protein n=6 Tax=Epsilonproteobacteria RepID=A6QAM8_SULNB Length = 81 Score = 66.3 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DKWL A K R +A +M++ G V+ N ++K SK +++ +T+ ++ V Sbjct: 1 MRVDKWLSAVNVVKRRTIATDMLKSGVVYVNSMKAKASKDLKVGDKVTIEYLKGPKSYEV 60 Query: 69 KAITE 73 I Sbjct: 61 LQIPT 65 >UniRef50_A7HLN2 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HLN2_FERNB Length = 79 Score = 66.3 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L R K R +A+E+ + G V +G+ KPS V+ L + G V V Sbjct: 1 MRLDKFLKQNRIIKRRTVAQEVSKAGLVKKDGRPLKPSYEVKPGDILEISYGTKIIIVKV 60 Query: 69 KA 70 Sbjct: 61 TD 62 >UniRef50_C9RA17 RNA-binding S4 domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RA17_AMMDK Length = 81 Score = 65.1 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 39/81 (48%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L AR R +A + + G V NG+ +KP+ V+ +TL G + V Sbjct: 1 MRIDKFLKEARLITRRTVANQALREGLVTINGRTAKPATRVKKGDIITLNLGGKLLRLEV 60 Query: 69 KAITEQRRPASEAALLYEETA 89 A+ RR E A LY Sbjct: 61 LAVEVPRRRRGEEAALYRLLD 81 >UniRef50_C9MA32 S4 domain protein n=2 Tax=Synergistaceae RepID=C9MA32_9BACT Length = 102 Score = 63.6 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L + K R++A EMI+ G V NG+ KP+ V +++ V Sbjct: 1 MRLDKYLKLSCLVKRRSVAAEMIDAGAVRLNGRPVKPASDVSDGDIVSVAFPFRLVEARV 60 Query: 69 KAITEQ--RRPASEA 81 + E+ RR A Sbjct: 61 ISSDERALRRGEPAA 75 >UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WG15_9SPHN Length = 92 Score = 63.6 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDE 63 +RLD+ L RF +TR++A+ MI G++ N R +K S V + LTL + Sbjct: 7 EEGTMRLDRLLVFLRFARTRSIAKAMILSGRMRLNSTRITKISCEVGVGDVLTLAYRGEI 66 Query: 64 RTVIVKAITEQRRPASEA 81 ++ + ++R SEA Sbjct: 67 CVARIEKLPDRRLSPSEA 84 >UniRef50_D1B612 RNA-binding S4 domain protein n=2 Tax=Synergistaceae RepID=D1B612_THEAS Length = 89 Score = 62.1 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L AR K R +A+EM E G V +G+ +KPS V L + + V V Sbjct: 1 MRVDKFLKLARIVKRRTVAQEMAEAGAVRVSGRVAKPSTEVRAGDQLEVDFPSRFLRVKV 60 Query: 69 K 69 Sbjct: 61 L 61 >UniRef50_A8F4I8 RNA-binding S4 domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4I8_THELT Length = 77 Score = 60.5 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L + K R +A++M++ K+ NG+ K S ++ N +T+ V V Sbjct: 1 MRIDKYLKTTKLIKRRTIAQQMLKHEKIFVNGRAVKASYEIKTNDIVTIIHPLRRIVVRV 60 Query: 69 K 69 Sbjct: 61 V 61 >UniRef50_C1SMC4 Ribosome-associated heat shock protein implicated in recycling of 50S subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMC4_9BACT Length = 87 Score = 60.5 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK L K R +A EM + G V NG+ +KPS V+ + L N + + + Sbjct: 1 MRIDKLLKVLMLIKRRTVANEMADEGFVLLNGRSAKPSTKVKAGDLIELDMWNYYKKLEI 60 Query: 69 KAITEQ 74 I + Sbjct: 61 VEIPLK 66 >UniRef50_A8LQY6 RNA-binding S4 n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LQY6_DINSH Length = 82 Score = 60.1 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 43 SKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALAR 102 +KP+ V LT QG R + V+A +R PA EA LY + + E + + Sbjct: 2 TKPAASVGAGDVLTFAQGRQIRVIRVEAAGMRRGPAPEAQALYTDLTPVPDPCEPPPVRK 61 Query: 103 KLNALTMPHPDRRPDKKERRDLLRFKH 129 RP KK RRD + Sbjct: 62 GP----------RPTKKHRRDYEESRR 78 >UniRef50_UPI0001BC589E heat shock protein 15 n=3 Tax=Fusobacterium RepID=UPI0001BC589E Length = 101 Score = 59.8 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+ +++ K +G+ +K V++ L L N + Sbjct: 1 MRLDKFLKVSRIIKRRTIAKMVVDEKKAKLDGKIAKAGTEVKVGQELELEYFNKYFKFKI 60 Query: 69 KAIT 72 + Sbjct: 61 LRVP 64 >UniRef50_C5CFR5 RNA-binding S4 domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFR5_KOSOT Length = 74 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D +L R K R LA++ +E G V NG +KP ++ L + N ++ V Sbjct: 1 MRVDLFLKKNRIIKRRTLAKQAVEKGYVLKNGHTTKPGVALKPGDELKVIFSNRVISLKV 60 Query: 69 K 69 Sbjct: 61 T 61 >UniRef50_B5Y800 Heat shock protein 15 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y800_COPPD Length = 82 Score = 55.9 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L + K R LA+ +I+ G V NG+ +K S V+++ + + +V Sbjct: 1 MRLDKFLKESGIIKRRTLAQRIIQAGYVKINGKLAKQSDPVKVDDMIEVDTPVAYTRYVV 60 Query: 69 KAITEQRRPASEAALLYEETAE 90 I +R +E ++T + Sbjct: 61 --INVERPSKAELQERIKKTDD 80 >UniRef50_D2C7K9 RNA-binding S4 domain protein n=5 Tax=Thermotogaceae RepID=D2C7K9_THENR Length = 77 Score = 55.5 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLD +L + K R +A+++++G +V NG+ +K S V+ + + + T+ V Sbjct: 1 MRLDLFLKIS-VVKRRTIAQKLLKGQRVLVNGRPAKASYEVKDGDIVEVFLPTKKITLRV 59 Query: 69 KA------ITEQRRPAS 79 ++E+R Sbjct: 60 VGNGGYEVLSEERVSKP 76 >UniRef50_UPI0001694F8C YabO n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694F8C Length = 69 Score = 54.0 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 25 ALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALL 84 +A+++ E G+V NG+ +KPS V+ L ++ G + TV V+ + + R AA + Sbjct: 1 TVAKDVSEQGRVWINGREAKPSSTVKAGDELAIQFGQKKVTVRVEMLADTTRK-ETAAEM 59 Query: 85 Y 85 Y Sbjct: 60 Y 60 >UniRef50_Q0FF40 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FF40_9RHOB Length = 65 Score = 52.4 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 R + V + +R PASEA LY + +E REK+ K RP K RR Sbjct: 2 RKIEVVKMGVRRGPASEAQELYLDHSEPRPIREKIPENPKY------EGKGRPTGKWRRA 55 Query: 124 LLRFKH 129 L F + Sbjct: 56 LHSFSN 61 >UniRef50_A5TSN2 Ribosome-associated heat shock protein n=10 Tax=Fusobacterium RepID=A5TSN2_FUSNP Length = 99 Score = 52.1 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+ +++GGKV +G+ K + V++ L + N + Sbjct: 1 MRLDKFLKVSRIIKRRPIAKLVVDGGKVKLDGKVVKAAVEVKVGQILEIEYYNKYFKFEI 60 Query: 69 KAIT 72 + Sbjct: 61 LQVP 64 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 51.7 bits (123), Expect = 8e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLD+WL + R ++RA ++ I+ G V NG++ K + + L E Sbjct: 40 MRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQGKAKTPLREGDQVQLWMPPPE 94 >UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglobaceae RepID=C8S933_FERPL Length = 208 Score = 50.5 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGNDER 64 +RLD++L + ++K+R+ A+E I+ G V NG+ +KPS V+ + + + + R Sbjct: 1 MRLDEFLKKSGYFKSRSQAKEAIKRGFVKVNGKVITKPSFQVKGSEKIEVAEKGKPR 57 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 49.4 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 1 MKEKPAVEVRLDKWLWAARFY--KTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 M E R+DK+L RFY +R + I+ G + NG K S VE + R Sbjct: 1 MPETETGGPRIDKYL--TRFYPEASRTKIQRAIKKGHLKVNGTDVKKSYGVEPGDEIVFR 58 Query: 59 Q 59 Sbjct: 59 L 59 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 49.0 bits (116), Expect = 5e-05, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDK++ +R+ + +I+ G V NG+ +KPS ++ T+T+ + Sbjct: 16 RLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTAKPSLKLKNGDTITIEISPET 69 >UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGS7_KOSOT Length = 268 Score = 48.6 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIV 49 ++RLD+ L A F+ +R+ A ++I+ GKV NG+ KP K V Sbjct: 4 KLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKV 46 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 48.6 bits (115), Expect = 7e-05, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 E+ VRLDK+L A +R+ A+++I+ V + K S V+ + + + Sbjct: 9 EEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPVKNSYKVKAGDEIEVTLPEE 68 Query: 63 E 63 E Sbjct: 69 E 69 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 47.8 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLD+WL + R ++RA ++ IE G V NG + + + L E Sbjct: 22 MRLDRWLVSQRPEQSRARIQKFIEAGYVRVNGTTGRAKTPLRHGDEIKLWMPPPE 76 >UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeota RepID=Q466Z9_METBF Length = 236 Score = 47.4 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQG 60 +RLD ++ +K+R A++ I G V NG +K S+ V + + + +G Sbjct: 1 MRLDAYIVDMGHFKSRGRAKKAILAGNVKVNGAVITKASRDVSTDDIIEVTEG 53 >UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ24_9FIRM Length = 241 Score = 47.4 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 RLD +L K+R+LA +I+ G V NG+ K S V+ N + + Sbjct: 4 RLDVYLSENNTVKSRSLAASLIKQGSVEVNGRICTKASFAVDENDNIRI 52 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 47.0 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 3 EKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 + ++RLD++L AA + +R+ + +I+ G V NG +KP V ++T+R Sbjct: 6 DDADGKIRLDQYL-AAHLPELSRSRIQSLIKSGDVLVNGSPAKPKNPVSRGDSITVRIPE 64 Query: 62 DE 63 E Sbjct: 65 PE 66 >UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBW0_9FIRM Length = 247 Score = 47.0 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 8 EVRLDKWLWAARFYK-TRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDERT 65 +RLD + +K +R A ++GGKV N Q SKP+ V++ +++R Sbjct: 170 SMRLDAVI--GNIFKLSRNEANMFVKGGKVKINHNQVSKPAMTVKVGDMISVRTKGRAIV 227 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 47.0 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 9 VRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 +R+DK+L R TR+ ++ E G + NG+ K + ++ +TL R + Sbjct: 44 IRIDKFL-VDRMNNATRSRIQQAAEAGAIFVNGRPVKSNYRIKPGDVVTLELLRPRRELE 102 Query: 68 VK 69 + Sbjct: 103 II 104 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 5/54 (9%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVEL---NATLTL 57 +++R+DK+L + + TR+ A+EM+ G+V NG K + +++ + + Sbjct: 1 MKIRIDKFL-STQAIATRSQAKEMLRAGRVLVNGTPVKAA-DLKVDPEGDEIRV 52 >UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B9H7_METTP Length = 238 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGND 62 +RLD +L +R+ A +I+ GKV NG K S V+ + + +G Sbjct: 3 MRLDIYL--VEIAGSRSKAVHLIKSGKVMVNGAVCRKQSYRVKPGDRVEIVEGFR 55 >UniRef50_A6Q7G3 Hemolysin A n=2 Tax=Epsilonproteobacteria RepID=A6Q7G3_SULNB Length = 237 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 27/38 (71%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS 46 +RLDK+L ++++R A E I+ G+V +G+++KPS Sbjct: 1 MRLDKYLVEEGYFESRNRALEAIKAGQVTVDGKKAKPS 38 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 46.3 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 15/82 (18%) Query: 10 RLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 R+D +L R Y TR L + I+ V NG K ++ + +N +++R Sbjct: 29 RIDHYLC--RLYPNYTRVLFQTAIKQEAVLVNGLPVKAARRMRVNDRVSVRLPE------ 80 Query: 68 VKAITEQRRPASEAA--LLYEE 87 + + R P + ++YE+ Sbjct: 81 ---LPDNRLPPEDIPIDIVYED 99 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 45.9 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + VR+DK+L Y++R ++ + G +H NG+ K + V N +TL Sbjct: 59 DANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPVKSNYKVRPNDLVTLMLDRP 118 Query: 63 ERTVIVK 69 +K Sbjct: 119 RHETSIK 125 >UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7GTM9_BIFLI Length = 276 Score = 45.9 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELN-ATLTLRQGND 62 RLD L A+ ++RA A+ +I+ G V +G+ +KPS +V+ + L + +G+D Sbjct: 33 RLDMMLVASGLVESRAKAQRLIKAGHVRVDGETITKPSFMVKAGHSELAVDKGDD 87 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 45.5 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 10 RLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDK L A+R +R+ +++++ G + NG+ KP++ V L + E Sbjct: 23 RLDK-LIASRVTGMSRSFVQQLMKRGAILVNGEPCKPAQRVRYGDRLEVYLPPVE 76 >UniRef50_A8RBL3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBL3_9FIRM Length = 260 Score = 45.1 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 +R+D++L ++ TR A++ I+ G V +G+ K S ++E +T+ Sbjct: 1 MRIDQYLVEKGYFTTRTRAQDAIKKGCVSVDGKTIMKNSFVIEEGKEVTV 50 >UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Leuconostoc RepID=Q03W41_LEUMM Length = 265 Score = 44.7 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDERT 65 +RLD + +A F +R+ A+++IE +V N + +KP + + +++R+ + Sbjct: 186 SSLRLDTVI-SAGFDLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRKHGRVQI 244 Query: 66 VIVKAITEQ 74 ++ I+++ Sbjct: 245 KLLDGISKK 253 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 44.7 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-QRSKPSKIVELNATLT 56 + +RLD L + Y +R+ A + IE GKV NG RSK S IV T+ Sbjct: 10 TQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNGLARSKRS-IVAPGDTIV 63 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 44.7 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 4/68 (5%) Query: 1 MKEKPAVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 + K +R+DK+L F + TR ++ + G + N K + V+ + + Sbjct: 58 IASKGQEPLRIDKYL--MNFIENATRNKIQQAAKEGHIWVNDLVVKQNYKVKAGDQIKVM 115 Query: 59 QGNDERTV 66 + Sbjct: 116 FTHPPYEF 123 >UniRef50_A4VTL3 Uncharacterized conserved protein, contains S4-like domain n=6 Tax=Streptococcus suis RepID=A4VTL3_STRSY Length = 263 Score = 44.7 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKP-SKIVELNATLTLRQGNDER 64 +RLDK L + F +RA A ++IE G V + ++ SK+VE+ +++R+ R Sbjct: 183 VSSMRLDK-LISVAFNLSRATANKLIEAGHVKLDYVLTEQTSKLVEIGQLISVRRYGRVR 241 Query: 65 TVIVKAITEQ 74 ++Q Sbjct: 242 LNEFLGFSKQ 251 >UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B9JSK8_AGRVS Length = 263 Score = 44.3 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 RLD+ L A + +R+ AR+ ++ G V NG+ KPS + T+ + + Sbjct: 13 QRLDQLLVALNLFASRSRARDAVQRGGVKVNGRTVTKPSLTFSPDVTIEIDDPAQDYV 70 >UniRef50_Q7VIT5 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=Q7VIT5_HELHP Length = 241 Score = 44.0 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 RLD +L +R A+E IE G V NG+ K S ++ + + + Sbjct: 2 QRLDIYLKT--LLSSRTKAQEAIESGCVRVNGKVVYKSSLPLKSSDEVDI 49 >UniRef50_C0ABD6 Hemolysin A n=2 Tax=Verrucomicrobia RepID=C0ABD6_9BACT Length = 253 Score = 43.6 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGND 62 PA ++RLD+ L A F +TR+ AR ++ G+V +R KP K + LT+ Q Sbjct: 3 PAAKLRLDELLVARGFVETRSQARAIVMSGRVRLGTERLDKPGKTYPADLPLTIDQPPR 61 >UniRef50_C1FHS6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FHS6_9CHLO Length = 248 Score = 43.6 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 16/34 (47%) Query: 24 RALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 R A E + G+V NG KPS V +TL Sbjct: 1 RREADEAVSAGRVRVNGALVKPSFRVRSGDVVTL 34 >UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acnes RepID=D1YBL0_PROAC Length = 76 Score = 43.6 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVI 67 +RL ++L A +T ARE+I G V NG+ ++ + + + + G T Sbjct: 7 IRLGQYLKFANLAETGGQARELIASGMVSVNGEVETRRGRQLHPGDEVRVTNGGQTVTAT 66 Query: 68 V 68 V Sbjct: 67 V 67 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 43.2 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 10 RLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 RLD +L ARF +R + I G+V NG KP+ V+ +TLR Sbjct: 21 RLDAYL--ARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLRI 71 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 43.2 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 14/71 (19%) Query: 6 AVEVRLDKWL-------WAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 + +RLD+++ W +R++ + IE G V NG+ KPS V N L + Sbjct: 39 SEGMRLDQYVQLHLGADW------SRSVVQRAIESGGVLLNGRPVLKPSYKVRKNDRLHV 92 Query: 58 RQGNDERTVIV 68 + V Sbjct: 93 TMPEPTHEIPV 103 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 43.2 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 10 RLDKWL------WAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDK++ W +R + R I+ G+V NG KPS V+ +TL Sbjct: 13 RLDKFVMEKTPEWISRTFIQR-----AIKNGEVLVNGTSKKPSYKVKSGDIITLNAPEAP 67 Query: 64 RTVIVK 69 + Sbjct: 68 EIPEIL 73 >UniRef50_B5ZBT3 Ribosomal RNA large subunit methyltransferase J n=15 Tax=Ureaplasma RepID=B5ZBT3_UREU1 Length = 247 Score = 42.8 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-QRSKPSKIVELNATLTLRQGNDERT 65 + RLD +L +TR+ A ++I+ G V N Q KPS +V+ N + ++ + Sbjct: 1 MSQRLDHYLKNTNQCETRSKAIDLIKRGFVFVNNLQILKPSFLVQENDFVDIKNNENNFV 60 >UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepID=B0TWR8_FRAP2 Length = 309 Score = 42.4 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Query: 3 EKPAVEVRLDKWL--WAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 +E R+D +L +R K +L I G++ N +R K + V + + Sbjct: 10 ADDVIEQRIDNFLISKFSRLPK--SLIYRWIRKGELRVNKKRVKQTTRVSAGDIVRVPPF 67 Query: 61 NDERTVIVKAITEQRRPASEAALLYE 86 + E + + +++ E +LYE Sbjct: 68 SLEENLEIAKVSKSHLDFLEQRILYE 93 >UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetaceae RepID=RS4_RHOBA Length = 202 Score = 42.4 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 RLD + F KTR AR+ I G NG + KP ++ + +R Sbjct: 94 RLDNVVRRVGFTKTRPQARQGITHGHFRVNGVKVTKPGYMLRAGDLIEVR 143 >UniRef50_Q3AAH6 S4 domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AAH6_CARHZ Length = 246 Score = 42.0 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 23 TRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDERTVIVKAITE 73 +R+ + IEG KV N + KPS V ++LR + + +++ Sbjct: 183 SRSQMVKEIEGQKVRVNWKLQVKPSYEVAPGDVISLRGRGRVEVLEIAGVSK 234 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 42.0 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSK-IVELN------ATLTLRQGN 61 +R+DK+L A R TR R +I+ G + NG+ K + + +R Sbjct: 1 MRVDKFLHAMRI-GTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQ 59 Query: 62 DERTV 66 V Sbjct: 60 YFYYV 64 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 42.0 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLD +L A +R+ +++I G+V NG K S + + + Sbjct: 22 RLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPVKASYEIRSGDCIAVWLPEAV 75 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 42.0 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 5 PAVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 E RLDK+L AR Y +R+ +++++ G V+ NG+ KPS+ + + L Sbjct: 12 EGEEERLDKFL--ARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPE 69 Query: 62 DE 63 E Sbjct: 70 PE 71 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 41.7 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 21/94 (22%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 K +R+D++L TR + IE G+V NG+ K + V+ + L Sbjct: 6 SKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPVKSNYRVKSCDHIHLTF--- 62 Query: 63 ERTVIVKAITEQRRPASEAAL-------LYEETA 89 R PA E A LYE+ Sbjct: 63 -----------LRPPAPELAPEDIPITILYEDDD 85 >UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41E03 Length = 264 Score = 41.7 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGNDERTV 66 RLDK+L +R ++EMI+ V N + +K S V + + R V Sbjct: 4 RLDKYLVNNNLIASRTKSKEMIKSKNVKVNDKIITKASYTVRDGDKVEIINDESLRYV 61 >UniRef50_B0K2W4 RNA-binding S4 domain protein n=10 Tax=Thermoanaerobacterales RepID=B0K2W4_THEPX Length = 248 Score = 41.7 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDER 64 +R+D + AA F +R A E+I+ G + N + ++ PS V+ ++LR R Sbjct: 169 VASLRVDS-VAAAGFGISRTKASELIKSGLLQINWEYTEDPSSEVKEGDVISLRGFGRIR 227 Query: 65 TVIVKA 70 V+ Sbjct: 228 LEEVRG 233 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 41.7 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 15/82 (18%) Query: 10 RLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 R+D +L +R Y +R + IE GKV NG K S+ + +N + + Sbjct: 27 RIDHYL--SRLYPNFSRVAFQRTIEEGKVLVNGLPVKISRRLRVNDVIEFSLPAE----- 79 Query: 68 VKAITEQRRPASEAAL--LYEE 87 +QR + L LY++ Sbjct: 80 ----PDQRVQPEDIPLDILYDD 97 >UniRef50_B9EB58 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EB58_MACCJ Length = 257 Score = 41.7 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 +RLD + A K+RA+A++ IE G + N K S ++ TL+++ Sbjct: 173 HATVSSLRLDV-VVAEMMRKSRAIAQKHIEAGHIKVNHVIIDKVSFVIASGDTLSIKGYG 231 Query: 62 DERTVIVKAITEQ 74 + + +T++ Sbjct: 232 RAQLTEIGDLTKK 244 >UniRef50_Q02WY5 Cell division protein, S4-like domain n=4 Tax=Lactococcus lactis RepID=Q02WY5_LACLS Length = 263 Score = 41.7 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 7 VEVRLDKWLWAARFYK-TRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDER 64 +R+DK + A +K +R +A M+E KV N + K V +++R + Sbjct: 181 DGLRIDKMIAIA--FKISRNIATNMLESKKVKINYQEIDKKDFSVGAGDLISVRGFGRIK 238 Query: 65 TVIVKAITEQ 74 + + +T++ Sbjct: 239 ILSLLGLTKK 248 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 41.3 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLD +L + +R L + +I+ GKV NG+ KP+ + + + + E Sbjct: 11 GTSARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGKERKPAWPLAEGDNVEIEWPSVE 68 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 41.3 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 7 VEVRLDKWLW-AARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 +RLDK+L +R+ +++IE GKV NG K S V + + R Sbjct: 14 SGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLHRKASYKVRGGEIIAVLLPP-PRE 72 Query: 66 VIVK 69 + VK Sbjct: 73 LSVK 76 >UniRef50_UPI000050FCA1 hypothetical protein BlinB_07935 n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCA1 Length = 267 Score = 41.3 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 RLD+ L TR+ A I G+V NG KPS++V + L++ + + Sbjct: 3 RLDRELVERELIATRSRAAREIAAGRVSVNGHTVSKPSQVVSDSDELSVTEPD 55 >UniRef50_A9MAK7 30S ribosomal protein S4 n=56 Tax=Alphaproteobacteria RepID=RS4_BRUC2 Length = 205 Score = 41.3 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD ++ A+F T AR+ I G V+ NG+R S +++ + +R+ + + +++ Sbjct: 95 RLDAVVYRAKFVPTIFAARQFINHGHVNVNGRRVNIQSYRLKVGDVVEVREKSKQLAIVL 154 Query: 69 KA--ITEQRRP 77 +A + E+ P Sbjct: 155 EAVQLAERDVP 165 >UniRef50_C2LQX1 RNA binding protein n=1 Tax=Streptococcus salivarius SK126 RepID=C2LQX1_STRSL Length = 267 Score = 41.3 bits (96), Expect = 0.011, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLR 58 +RLD L A +R+ A ++I GKV N Q K ++ V + +++R Sbjct: 184 SSMRLDNVL-ATVLNLSRSNALKLIASGKVKLNYRQIEKANQTVMIGDMISVR 235 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 40.9 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M+ + A RLD + R K+R+ + +IE G V NG K + V + + Sbjct: 35 MEFRLAEGTRLDVGV-TERVGKSRSFIQGLIEEGHVLVNGAARKANYKVRAMDQIAVVIP 93 Query: 61 NDERTVIVKA 70 R + V+A Sbjct: 94 P-PRELKVEA 102 >UniRef50_D1J7L7 30S ribosomal protein S4 n=2 Tax=Mycoplasma RepID=D1J7L7_MYCHP Length = 199 Score = 40.9 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 RLD ++ A F +TRA AR+++ G +G ++ PS IV++ + + L+ Sbjct: 95 RLDNLVFRAGFARTRAQARQLVNHGHFTVDGCKANIPSMIVKVGSVIELK 144 >UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAR0_ELUMP Length = 258 Score = 40.9 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS-KIVELNATLTLRQ 59 M + RLD L A F+K+R A+ I G+V NG + + ++ +TL++ Sbjct: 1 MMTSNPKKPRLDMELIAQGFFKSRTRAQASIMAGEVLVNGTVEYGADRKIKPEDIITLKE 60 Query: 60 GNDERT 65 + Sbjct: 61 KSCPYV 66 >UniRef50_C7H0C7 Hemolysin A n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C7_9FIRM Length = 272 Score = 40.9 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 +R+DK L +Y++R A++ I G+V G+ K + V A + +R Sbjct: 1 MRIDKLLVEEGYYESREKAQQAISAGEVEVEGKICLKSASQVSSKARINIRNDRLPYV 58 >UniRef50_A9B436 30S ribosomal protein S4 n=3 Tax=Bacteria RepID=RS4_HERA2 Length = 211 Score = 40.9 bits (95), Expect = 0.014, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDER 64 RLD ++ + TRA AR+++ G + NG+++ PS +VE+ + +R + +R Sbjct: 100 RLDNVVFRLGYAVTRAQARQLVNHGHITVNGRKTDIPSALVEVGDVIGVRAESRKR 155 >UniRef50_C7LZB3 Hemolysin A n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZB3_ACIFD Length = 249 Score = 40.5 bits (94), Expect = 0.016, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 VRLD+ L A ++R+ A +I G+V N + +++V + L++ Sbjct: 3 RVRLDRALVAGGLARSRSHAARLIAEGRVLVNRAPALSAARLVAPSDVLSV 53 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 40.5 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 +R+D +L K R +++IE G V+ N K + IV++N + + ++ +I Sbjct: 37 IRIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKKNYIVKINDVIEIFLPEGKKNII 95 >UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=prokaryotic environmental samples RepID=B3T0Q8_9ZZZZ Length = 320 Score = 40.5 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 3 EKPAVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 + +RLD +L + K ++ MI G+V N +R+KP V +N T+ + Sbjct: 13 SRDDDGMRLDNYL--IKIIKGMPKSRIYRMIRKGEVRINSKRAKPRSRVHVNDTVRIP 68 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 40.5 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELN 52 +RLDK+L + ++R++ + I G V NG+ K PS V+ Sbjct: 1 MRLDKYL-SDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPG 44 >UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSN6_9PROT Length = 243 Score = 40.5 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 +RLD +L A ++R A+++I G V NG + K + ++ + R Sbjct: 1 MRLDSYLVEAGHVRSRERAKKVIGDGYVWVNGVQVRKAGRSLQPTDRVEFR 51 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 40.5 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D WL +R+ + I+ G V +G K + + + + V + Sbjct: 48 RVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPLKANYRLRPGDVIEVA-PPAPEAVEIL 106 >UniRef50_Q01WB9 30S ribosomal protein S4 n=301 Tax=Bacteria RepID=RS4_SOLUE Length = 210 Score = 40.5 bits (94), Expect = 0.018, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 RLD ++ F +RA AR+++ G ++ NG++ PS ++ + +T+R Sbjct: 100 RLDSVIYRMGFGTSRAQARQVVRHGHINVNGRKCNIPSALINVGDEITVR 149 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 40.5 bits (94), Expect = 0.019, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 23 TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAA 82 +R L + I G++ NG + KP V+ + + + I + P + Sbjct: 30 SRNLIQNAITKGQITVNGSQKKPHYKVKQGDEIQIDFHELVEETKEENILPENIPLNI-- 87 Query: 83 LLYEE 87 LYE+ Sbjct: 88 -LYED 91 >UniRef50_A3DDJ5 RNA-binding S4 n=3 Tax=Clostridium thermocellum RepID=A3DDJ5_CLOTH Length = 263 Score = 40.1 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGN 61 +RLD + +A F +R+ ++I G KV N + + P+++V+ T+++R Sbjct: 181 SSTVASLRLDS-VASAGFGISRSKTADLIRGEKVAVNWETATNPARLVKEGDTISIRGKG 239 Query: 62 DERTVIV 68 V Sbjct: 240 RVVVEKV 246 >UniRef50_UPI00016B2072 Hemolysin A n=3 Tax=candidate division TM7 RepID=UPI00016B2072 Length = 199 Score = 40.1 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 21/38 (55%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK 44 ++ RLD+++ R +R+ A I G+V NG+ K Sbjct: 1 MKQRLDRYIVENRLTNSRSQAENYIRLGRVTVNGEVIK 38 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 40.1 bits (93), Expect = 0.023, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 K R+DK+L + R TR +++I+ + N +++KP+ +E N T+ + E Sbjct: 30 KEEAGSRIDKFL-SERLELTRTRIQQLIKDENILVNEKKTKPAYKIEENDTIKVVIPELE 88 Query: 64 RTVIVK 69 TV +K Sbjct: 89 -TVEIK 93 >UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacteria RepID=B1KQS3_SHEWM Length = 239 Score = 40.1 bits (93), Expect = 0.023, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGND 62 +RLDK+L + TR A E+I GKV NG+ PS V N + L G Sbjct: 1 MRLDKFLCKSTQL-TRHEACELILAGKVLVNGESVVSPSAQVHENNHIRLEGGQR 54 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 40.1 bits (93), Expect = 0.025, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 1 MKEKPAVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 + + + R+DK+L ++ K +R+ +++I+ KV NG+ K S V + L Sbjct: 10 VSSEEEGK-RIDKYL--SKLNKDLSRSYIQKLIDNDKVLVNGESVKRSFKVNRGDHIRLI 66 Query: 59 QGNDE 63 E Sbjct: 67 IPPPE 71 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 39.7 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 + R+D+WL A +R+ +E I+ +V NG K S + + + Sbjct: 5 ADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAVKTSYTLRAADAVEV 60 >UniRef50_Q7UUI8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUI8_RHOBA Length = 321 Score = 39.7 bits (92), Expect = 0.028, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 23 TRALAREMIEGGKVHYNGQRSKP-SKIVELNATLTLRQGNDER 64 +R+ AR MI+ G V NG K V+ + +R +R Sbjct: 29 SRSQARGMIDHGCVMINGSPCKSVGTTVKPGDLVAVRYDKHQR 71 >UniRef50_P27929 37S ribosomal protein NAM9, mitochondrial n=13 Tax=Saccharomycetales RepID=NAM9_YEAST Length = 486 Score = 39.7 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD L+ A F + AR+ I G V NG + K PS ++ +++ ++ Sbjct: 104 RLDFALFRAMFASSVRQARQFILHGNVRVNGVKIKHPSYTLKPGDMFSVKPDK-----VL 158 Query: 69 KAITEQRRPASEA 81 +A+ ++ EA Sbjct: 159 EALGAKKPSFQEA 171 >UniRef50_Q47JN8 Hemolysin A n=4 Tax=Betaproteobacteria RepID=Q47JN8_DECAR Length = 273 Score = 39.7 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHY-NGQRSKPSKIVELNATLTLRQGN 61 E+PA +R D L A + +R A+ MI+ G+V + G SKP+ + + LT+ Sbjct: 22 ERPAGVLRADALLVAQKLAPSRTAAQWMIKSGRVSWAGGAISKPALELPEDTPLTVTADP 81 Query: 62 DERTVIVKAITEQRRPASEAALL 84 + V R A L Sbjct: 82 EAHYV-------SRGGNKLAGAL 97 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 39.7 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 R+D +L + + +TR+ +E+I+ + NG+++K S V + + Sbjct: 12 RIDIYL-SKKLDETRSRIQELIKSNNILVNGKKTKASYKVNFGDEIFIDIP 61 >UniRef50_C9M7W9 Ribosomal protein S4 n=2 Tax=Synergistaceae RepID=C9M7W9_9BACT Length = 206 Score = 39.7 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTV 66 RLD ++ F TR AR+++ G NG++ PS V +++R+ + + V Sbjct: 99 RLDNVVYRLGFCTTRPQARQLVCHGHFAVNGRKVDIPSARVSAGDVISIRENSKDMKV 156 >UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN52_9PROT Length = 324 Score = 39.7 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 3 EKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 RLD+W+ RF T+ ++ + G+V NG R K VE + + Sbjct: 14 TSAEAGQRLDRWMKR-RFPGVTQGQVQKWLRKGQVRLNGGRVKADHRVESGEVVRVP 69 >UniRef50_A5KQD5 Putative uncharacterized protein n=3 Tax=Ruminococcus RepID=A5KQD5_9FIRM Length = 181 Score = 39.3 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 RLD ++ +TR AR++++ V NG++ PS +V+ T+ ++ Sbjct: 72 RLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVKAGDTIEIK 121 >UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular organisms RepID=RS4_NAUPA Length = 208 Score = 39.3 bits (91), Expect = 0.039, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQ--GNDERTV 66 RLD ++ F TR AR+++ G + NG++ PS +V+ + +R+ N+ + Sbjct: 99 RLDNVVYRMGFASTRRFARQLVTHGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQ 158 Query: 67 IVKAITEQRRPAS 79 +++Q A Sbjct: 159 RALELSQQTGIAP 171 >UniRef50_A4WUP0 30S ribosomal protein S4 n=66 Tax=Bacteria RepID=RS4_RHOS5 Length = 206 Score = 39.3 bits (91), Expect = 0.040, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD ++ A+F T AR+ + G V NGQR S + + +R+ + + +++ Sbjct: 95 RLDAIVYRAKFVPTVFAARQFVNHGHVTVNGQRVNIGSYRCKEGDVIQVRERSRQLAIVL 154 Query: 69 KA--ITEQRRP 77 +A + E+ P Sbjct: 155 EATQLAERDVP 165 >UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/Chlorobi group RepID=RS4_CHLCH Length = 203 Score = 39.0 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD ++ A F +RA AR+++ G V NG++ PS +V + RQ + + + Sbjct: 94 RLDNIVFRAGFSPSRAGARQLVSHGHVTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVT 153 Query: 69 KAI---TEQRRPA 78 ++ E R PA Sbjct: 154 DSLNKTPESRIPA 166 >UniRef50_Q03L90 Cell division protein, contains S4-like domain n=3 Tax=Streptococcus thermophilus RepID=Q03L90_STRTD Length = 266 Score = 39.0 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 7 VEVRLDKWLWAARFYKT-RALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDER 64 +RLD L + KT R+ A ++I GK+ N Q K +I+ + +++R R Sbjct: 184 SSMRLDNVL--STVLKTSRSNALKLIASGKIKLNYRQIEKSDQIISIGDMISVRGFGRFR 241 Query: 65 TVIVKAITEQRRPASEA 81 + I++ A Sbjct: 242 LGQQEGISKS-GKAKVV 257 >UniRef50_Q2JUA0 Hemolysin A n=8 Tax=Cyanobacteria RepID=Q2JUA0_SYNJA Length = 275 Score = 39.0 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLT 56 A VRLD WL ++ +R A+ I G+V NG R++ + + Sbjct: 2 ADRVRLDTWLVERGYFSSRQQAQRAILAGEVFLNGVRAEKAGTWVSGDPVV 52 >UniRef50_C6B8C6 RNA-binding S4 domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B8C6_RHILS Length = 146 Score = 39.0 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR--QGNDERTV 66 RLD ++ A+F T AR+ I G V NG R S + + +R + Sbjct: 36 RLDAIVYRAKFAPTPFAARQFINHGHVIVNGMRVNISSYRCKAGDVIEVRPKSKQLAVVL 95 Query: 67 IVKAITEQRRPASEAA 82 + E+ P AA Sbjct: 96 ESVGLAERDVPDYIAA 111 >UniRef50_B4UM41 Pseudouridine synthase, RluA family n=4 Tax=Anaeromyxobacter RepID=B4UM41_ANASK Length = 302 Score = 39.0 bits (90), Expect = 0.046, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 3/109 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 R+D+++ AAR +R LAR IE G V +G+R K + + + + R Sbjct: 16 RIDRFI-AARGGISRGLARRAIEAGGVFVDGRRCKVAGRTLTPGQQVVVNLEEGGRAAPA 74 Query: 69 K-AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRP 116 A+ +R ++A L + V + + R + P Sbjct: 75 LAALGRERLLYADADLCAVDKPAGVPAQPTLTTDRGALPELVSALLGAP 123 >UniRef50_A6WWC5 Hemolysin A n=9 Tax=Bacteria RepID=A6WWC5_OCHA4 Length = 253 Score = 39.0 bits (90), Expect = 0.047, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%) Query: 1 MKEKPAVE-VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIV 49 M + + + +RLD+ L + TR+ AR+ I+ G V +G+ KP + V Sbjct: 1 MSGETSDKNLRLDQLLVELGLFATRSRARDAIQRGTVKVDGKPVTKPGQTV 51 >UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteria RepID=B0VI05_9BACT Length = 205 Score = 39.0 bits (90), Expect = 0.051, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 RLD ++ F TR AR+ I G NG++ PS +V+ + +R Sbjct: 96 RLDNVVYRMGFAVTRMQARQFINHGHFLVNGRKVDIPSYLVKAGDIIEVR 145 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 39.0 bits (90), Expect = 0.052, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 23 TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE-RTVIVKAIT 72 +R A +I G V NG R K S E + + R ++ + I Sbjct: 32 SRTQAATLIANGNVLVNGAREKASYKGETGDVVRVTIPPPPGRDIVAEQIP 82 >UniRef50_Q1H2K1 30S ribosomal protein S4 n=6 Tax=Proteobacteria RepID=RS4_METFK Length = 205 Score = 39.0 bits (90), Expect = 0.053, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD ++ A F T A AR+++ V NG+ PS V + ++L+ + + ++V Sbjct: 95 RLDNVVFRAGFAPTIAAARQLVTHRHVMLNGKSVNIPSIRVRVGDEISLKASSTKLPIVV 154 Query: 69 KAITE 73 + + Sbjct: 155 ETLAN 159 >UniRef50_A8IBR4 Hemolysin A n=63 Tax=Alphaproteobacteria RepID=A8IBR4_AZOC5 Length = 274 Score = 39.0 bits (90), Expect = 0.054, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 A R+DK L + +RA A+ + G+V NG + KP + V+ +A + R Sbjct: 33 AARARIDKLLVERGLFDSRARAQAAVLAGQVSVNGAVAKKPGQEVDEDAQIEAR 86 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 38.6 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLDK + TR+ A ++E V NG+ +K S ++ N + ++ E Sbjct: 1 MSGLRLDKAMALIPEIGTRSRASHLLESNSVLLNGKPAKASVAIKENDLIEIQLPEPE 58 >UniRef50_C8WW52 Putative uncharacterized protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WW52_ALIAD Length = 255 Score = 38.6 bits (89), Expect = 0.056, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 18/48 (37%) Query: 23 TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKA 70 +R A+ ++ G+V N + V L++R R + Sbjct: 190 SRKDAQSLVASGRVELNHAEAPADAEVRPGDVLSVRGFGRVRVLETVG 237 >UniRef50_C4KD21 RNA-binding S4 domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4KD21_THASP Length = 285 Score = 38.6 bits (89), Expect = 0.058, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTV 66 +R+D+ L A +R AR +IE G+V + GQ +KP+ + +A L + + +R V Sbjct: 29 LRVDQLLVAQGLAASRTAARALIEAGRVSHEGQPVAKPALELPPDARLAVTPADSDRFV 87 >UniRef50_A4XKR0 RNA-binding S4 domain protein n=2 Tax=Clostridia RepID=A4XKR0_CALS8 Length = 277 Score = 38.6 bits (89), Expect = 0.059, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 23 TRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGNDERTVIVKAITEQ 74 +R A +++ KV N KPS V+ +++R + V T++ Sbjct: 214 SREDASDLVRQFKVAVNWVYIDKPSYEVKEGDLISVRHHGRLKVEKVLTTTKK 266 >UniRef50_A1ZQW5 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZQW5_9SPHI Length = 297 Score = 38.6 bits (89), Expect = 0.059, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 23 TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL------RQGNDERTVIVK 69 +R ++ I+ G V NG ++ + V+ +TL E T+ V Sbjct: 31 SRKGVKKAIKKGAVRLNGMPAETGRWVQPGDIITLVDLEETPPKQYEFTLEVV 83 >UniRef50_D1C704 Ribosomal protein S4 n=2 Tax=Bacteria RepID=D1C704_SPHTD Length = 203 Score = 38.6 bits (89), Expect = 0.060, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 RLD ++ F TR +AR+++ G V NG+R PS V T+ L Sbjct: 95 RLDNVVYRLGFTPTRPMARQLVNHGHVLVNGRRVDIPSYRVSPGDTIALT 144 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 38.6 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 +RLDK+L TR+ A+ M+ G+V NG K +L T T+ T Sbjct: 1 MRLDKYLAETAQC-TRSEAKTMLAKGRVQVNGAVCKKG-DTQLKDTDTVAVDGALLT 55 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 38.6 bits (89), Expect = 0.069, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS-KIVELNATLTL 57 +RLDK+L TR+ A+ ++ G+V NG K + ++ + Sbjct: 1 MRLDKYLAETAQC-TRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAV 49 >UniRef50_Q1WT66 30S ribosomal protein S4 n=12 Tax=Bacteria RepID=RS4_LACS1 Length = 201 Score = 38.6 bits (89), Expect = 0.070, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD ++ TR AR+++ G + +G+R PS VE ++LR+ + + ++ Sbjct: 94 RLDNVVYRLGLASTRRQARQLVNHGHITVDGKRVDIPSYEVEPGQVISLRERSKDLQIVK 153 Query: 69 KAITEQRR 76 +A+ Sbjct: 154 EALEAVVG 161 >UniRef50_A6NR04 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR04_9BACE Length = 266 Score = 38.2 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 24 RALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQ 74 R+ A ++I G+V N + +KP + V ++ R V ++++ Sbjct: 204 RSKAADLISSGRVQLNHRECTKPDRTVAQGDVISCRGMGKAAVKTVGGVSKK 255 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 38.2 bits (88), Expect = 0.083, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKP-SKIVELNATLTLRQGNDERTVI 67 +R++K++ A +R A E+I GKV NGQ + + V+ + + Sbjct: 1 MRINKYIAHAGIA-SRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPIYNEEK 59 Query: 68 VKAITEQRRP 77 V + + R Sbjct: 60 VYYLLNKPRG 69 >UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidiosa RepID=B0U5V6_XYLFM Length = 330 Score = 38.2 bits (88), Expect = 0.084, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 30/64 (46%) Query: 24 RALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAAL 83 R+L +++ G+V NG R K + ++ + L + + A + EAA+ Sbjct: 45 RSLIYKLVRSGQVRVNGGRVKAERKLDGGDEVRLPPLRLIQDRAIVAPSAAFLARMEAAI 104 Query: 84 LYEE 87 ++E+ Sbjct: 105 VFED 108 >UniRef50_C4WXG6 ACYPI004962 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WXG6_ACYPI Length = 188 Score = 38.2 bits (88), Expect = 0.085, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDE- 63 +R+D L A K+R ++ NG++ K S +E+ + L +G Sbjct: 85 TSTMRMDTVLKHA-LGKSRNKIEVAFYESRIRVNGEKVPKKSHTIEVGDEVDLIKGPSPN 143 Query: 64 -----RTVIVKAITEQ 74 V+ ++ + Sbjct: 144 NPDFLLVSRVEVLSAK 159 >UniRef50_Q5WFI1 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFI1_BACSK Length = 253 Score = 38.2 bits (88), Expect = 0.088, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 2 KEKPAV--EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 +EKP +RLD L +A + +RA A ++I G V N + + PS V + L++R Sbjct: 168 EEKPVTVSSLRLDALL-SALYGLSRAKAADLIGKGLVKVNWKVVEHPSFRVAIGDDLSVR 226 Query: 59 QGNDERTVIVKAITEQ 74 + + + +T++ Sbjct: 227 GAGRAKVLKQEGVTKK 242 >UniRef50_D2RJV3 RNA-binding S4 domain protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV3_ACIFE Length = 265 Score = 38.2 bits (88), Expect = 0.088, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 23 TRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIVKAITEQ 74 +R+ + I+G V N Q +K PS+ V+ ++ R V+ T++ Sbjct: 202 SRSRMADEIKGQNVKLNWQEAKSPSQTVKEGDVISFRSRGRVELAEVRGTTKK 254 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C6WVI1 RNA-binding S4 domain protein n=1 Tax=Methyloten... 154 7e-37 UniRef50_P0ACH0 Heat shock protein 15 n=250 Tax=cellular organis... 151 5e-36 UniRef50_D0FX09 Heat shock protein 15 n=2 Tax=Erwinia pyrifoliae... 150 1e-35 UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobact... 150 2e-35 UniRef50_Q0BI23 RNA-binding S4 domain protein n=59 Tax=Betaprote... 148 4e-35 UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=2... 148 4e-35 UniRef50_D1W8V5 S4 domain protein n=2 Tax=Prevotella RepID=D1W8V... 148 5e-35 UniRef50_D0L3C9 RNA-binding S4 domain protein n=31 Tax=Bacteria ... 148 5e-35 UniRef50_Q2SPF7 Ribosome-associated heat shock protein implicate... 148 7e-35 UniRef50_C5VMC9 Heat shock protein 15 n=1 Tax=Prevotella melanin... 146 2e-34 UniRef50_C9LEL6 Heat shock protein 15 n=5 Tax=Prevotella RepID=C... 145 5e-34 UniRef50_B4F027 Heat shock protein 15 n=3 Tax=Proteus RepID=B4F0... 145 6e-34 UniRef50_A4XP72 RNA-binding S4 domain protein n=56 Tax=Gammaprot... 144 1e-33 UniRef50_Q7MQ01 Ribosome-associated heat shock protein n=3 Tax=G... 143 2e-33 UniRef50_Q15ZC8 RNA-binding S4 n=19 Tax=Gammaproteobacteria RepI... 143 2e-33 UniRef50_Q7MXL0 Heat shock protein 15 n=32 Tax=Bacteroidales Rep... 143 2e-33 UniRef50_B3PHB2 Heat shock protein 15 n=9 Tax=Proteobacteria Rep... 143 2e-33 UniRef50_D0J2J0 RNA-binding S4 n=5 Tax=Bacteria RepID=D0J2J0_COMTE 142 3e-33 UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium... 141 7e-33 UniRef50_Q1H1V4 RNA-binding S4 n=2 Tax=Proteobacteria RepID=Q1H1... 141 7e-33 UniRef50_C6X0Q5 Ribosome-associated heat shock protein n=1 Tax=F... 140 1e-32 UniRef50_A9BZ53 RNA-binding S4 domain protein n=8 Tax=Bacteria R... 140 1e-32 UniRef50_C6P442 RNA-binding S4 domain protein n=1 Tax=Sideroxyda... 140 2e-32 UniRef50_Q500C9 RNA-binding S4 n=13 Tax=Gammaproteobacteria RepI... 140 2e-32 UniRef50_Q1YS11 Ribosome-associated heat shock protein implicate... 139 3e-32 UniRef50_B9Z2X0 RNA-binding S4 domain protein n=2 Tax=Neisseriac... 139 3e-32 UniRef50_Q3ILP1 Heat shock protein 15, DNA/RNA-binding n=12 Tax=... 139 3e-32 UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma prot... 139 3e-32 UniRef50_C5V1W3 RNA-binding S4 domain protein n=1 Tax=Gallionell... 138 4e-32 UniRef50_C7RIC4 RNA-binding S4 domain protein n=1 Tax=Candidatus... 138 5e-32 UniRef50_C6Y288 RNA-binding S4 domain protein n=4 Tax=Sphingobac... 138 7e-32 UniRef50_C2MAE5 Heat shock protein 15 n=8 Tax=Bacteria RepID=C2M... 137 9e-32 UniRef50_Q0EYY2 Heat shock protein 15 n=1 Tax=Mariprofundus ferr... 137 1e-31 UniRef50_A6VR83 RNA-binding S4 domain protein n=3 Tax=Gammaprote... 137 1e-31 UniRef50_A0M418 Protein containing RNA-binding S4 domain n=18 Ta... 137 1e-31 UniRef50_C7PRL2 RNA-binding S4 domain protein n=1 Tax=Chitinopha... 137 1e-31 UniRef50_B6R6S6 RNA-binding S4 n=3 Tax=Alphaproteobacteria RepID... 136 1e-31 UniRef50_C0YT05 Heat shock protein 15 n=2 Tax=Flavobacteriaceae ... 136 2e-31 UniRef50_A6T2N5 Heat shock protein 15 n=3 Tax=Proteobacteria Rep... 136 2e-31 UniRef50_B9XC61 RNA-binding S4 domain protein n=2 Tax=Verrucomic... 135 4e-31 UniRef50_Q1QAQ6 RNA-binding S4 n=5 Tax=Moraxellaceae RepID=Q1QAQ... 134 8e-31 UniRef50_C4ZJ47 RNA-binding S4 domain protein n=1 Tax=Thauera sp... 134 1e-30 UniRef50_D2NQJ7 Ribosome-associated heat shock protein n=6 Tax=A... 134 1e-30 UniRef50_Q0AD54 RNA-binding S4 domain protein n=3 Tax=Nitrosomon... 133 3e-30 UniRef50_Q01Z85 RNA-binding S4 domain protein n=4 Tax=Bacteria R... 133 3e-30 UniRef50_C9YFQ6 Putative uncharacterized protein n=1 Tax=Curviba... 132 3e-30 UniRef50_Q0A9G5 RNA-binding S4 domain protein n=3 Tax=Ectothiorh... 132 3e-30 UniRef50_Q31JR0 RNA-binding S4-domain protein n=1 Tax=Thiomicros... 131 7e-30 UniRef50_B2UBP9 RNA-binding S4 domain protein n=11 Tax=cellular ... 131 8e-30 UniRef50_B8GNB4 RNA-binding S4 domain protein n=7 Tax=Proteobact... 131 1e-29 UniRef50_C1A9Y0 Heat shock protein 15 n=1 Tax=Gemmatimonas auran... 130 1e-29 UniRef50_A0K0Y7 RNA-binding S4 domain protein n=12 Tax=Actinobac... 130 2e-29 UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicro... 129 3e-29 UniRef50_C7LE02 S4 domain protein n=38 Tax=Rhizobiales RepID=C7L... 128 5e-29 UniRef50_UPI000050FC77 heat shock protein Hsp15 n=1 Tax=Brevibac... 128 7e-29 UniRef50_A6G6M5 Putative uncharacterized protein n=1 Tax=Plesioc... 127 1e-28 UniRef50_Q0S6G3 Ribosome-associated heat shock protein n=7 Tax=A... 127 1e-28 UniRef50_A5EY77 Ribosome-associated heat shock protein n=2 Tax=C... 126 2e-28 UniRef50_C0BJS5 RNA-binding S4 domain protein n=1 Tax=Flavobacte... 126 2e-28 UniRef50_C7I4L5 RNA-binding S4 domain protein n=1 Tax=Thiomonas ... 124 6e-28 UniRef50_Q2P648 Heat shock protein 15 homolog n=13 Tax=Xanthomon... 124 8e-28 UniRef50_B1Y782 RNA-binding S4 domain protein n=5 Tax=Burkholder... 124 9e-28 UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothioba... 123 2e-27 UniRef50_B0MVH7 Putative uncharacterized protein n=1 Tax=Alistip... 123 2e-27 UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales R... 122 3e-27 UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobial... 122 4e-27 UniRef50_C5C3U9 RNA-binding S4 domain protein n=12 Tax=Actinomyc... 122 4e-27 UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID... 121 5e-27 UniRef50_Q1NY04 RNA-binding S4 n=1 Tax=delta proteobacterium MLM... 121 5e-27 UniRef50_Q2RYB5 RNA-binding S4 n=1 Tax=Rhodospirillum rubrum ATC... 121 8e-27 UniRef50_B5JNJ8 S4 domain protein n=1 Tax=Verrucomicrobiae bacte... 120 1e-26 UniRef50_Q169A4 Heat shock protein, putative n=22 Tax=Rhodobacte... 119 3e-26 UniRef50_Q47PE2 RNA-binding S4 n=1 Tax=Thermobifida fusca YX Rep... 118 5e-26 UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID... 118 8e-26 UniRef50_A7HTT3 RNA-binding S4 domain protein n=10 Tax=Alphaprot... 114 9e-25 UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaprote... 108 5e-23 UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospiril... 106 2e-22 UniRef50_UPI000174635B protein containing RNA-binding S4 domain ... 104 8e-22 UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicro... 103 3e-21 UniRef50_A9E5L5 Heat shock protein 15 n=1 Tax=Kordia algicida OT... 102 4e-21 UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q... 98 6e-20 UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 96 3e-19 UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 96 3e-19 UniRef50_Q11CX7 RNA-binding S4 n=1 Tax=Chelativorans sp. BNC1 Re... 95 6e-19 UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC25... 94 1e-18 UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiale... 94 1e-18 UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis R... 93 3e-18 UniRef50_Q0AMA8 RNA-binding S4 domain protein n=2 Tax=Alphaprote... 93 3e-18 UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litorali... 91 7e-18 UniRef50_A3DIS8 RNA-binding S4 n=7 Tax=Clostridiales RepID=A3DIS... 91 1e-17 UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacte... 90 2e-17 UniRef50_B4RFP2 Ribosome-associated heat shock protein n=6 Tax=C... 90 3e-17 UniRef50_A3UGK9 S4 domain protein n=1 Tax=Oceanicaulis alexandri... 90 3e-17 UniRef50_A3VNF6 S4 domain protein n=1 Tax=Parvularcula bermudens... 89 5e-17 UniRef50_A7H4E7 S4 domain protein n=30 Tax=Epsilonproteobacteria... 88 7e-17 UniRef50_P37557 Uncharacterized protein yabO n=25 Tax=Bacteria R... 88 7e-17 UniRef50_Q9KGI8 Uncharacterized protein BH0073 n=176 Tax=Firmicu... 86 2e-16 UniRef50_Q0BWQ4 S4 domain protein n=1 Tax=Hyphomonas neptunium A... 86 4e-16 UniRef50_B0SXM9 RNA-binding S4 domain protein n=1 Tax=Caulobacte... 86 4e-16 UniRef50_P64406 Uncharacterized protein spr0007 n=42 Tax=Bacteri... 86 5e-16 UniRef50_A8RA49 Putative uncharacterized protein n=2 Tax=unclass... 85 5e-16 UniRef50_Q03N19 Ribosome-associated heat shock protein implicate... 85 6e-16 UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4... 85 7e-16 UniRef50_C5EYQ4 Putative uncharacterized protein n=3 Tax=Helicob... 85 8e-16 UniRef50_Q046E2 Ribosome-associated heat shock protein implicate... 85 1e-15 UniRef50_C5RJP4 RNA-binding S4 domain protein n=2 Tax=Clostridiu... 85 1e-15 UniRef50_B7AVE5 Putative uncharacterized protein n=1 Tax=Bactero... 85 1e-15 UniRef50_C6XPI0 RNA-binding S4 domain protein n=1 Tax=Hirschia b... 84 2e-15 UniRef50_B0VF38 RNA-binding S4 n=1 Tax=Candidatus Cloacamonas ac... 84 2e-15 UniRef50_B8FZC2 RNA-binding S4 domain protein n=2 Tax=Desulfitob... 83 2e-15 UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-2... 83 2e-15 UniRef50_D1AVF5 RNA-binding S4 domain protein n=3 Tax=Fusobacter... 81 9e-15 UniRef50_B4WYP3 Putative uncharacterized protein n=1 Tax=Alcaniv... 81 1e-14 UniRef50_C8WQS2 RNA-binding S4 domain protein n=2 Tax=Alicycloba... 81 1e-14 UniRef50_Q6AE36 Ribosome-associated heat shock protein n=1 Tax=L... 80 2e-14 UniRef50_D2MMW4 S4 domain protein n=1 Tax=Bulleidia extructa W12... 80 2e-14 UniRef50_Q9ZJJ0 Uncharacterized protein jhp_1318 n=14 Tax=Helico... 79 4e-14 UniRef50_Q9ZIM1 Uncharacterized protein Lmo0216 n=117 Tax=Bacter... 78 1e-13 UniRef50_C8P218 S4 domain protein n=1 Tax=Erysipelothrix rhusiop... 77 2e-13 UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=E... 76 3e-13 UniRef50_B1ZVL5 Heat shock protein 15 n=1 Tax=Opitutus terrae PB... 76 3e-13 UniRef50_A9NE18 S4 RNA-binding domain protein n=1 Tax=Acholeplas... 75 6e-13 UniRef50_C9MA32 S4 domain protein n=2 Tax=Synergistaceae RepID=C... 74 1e-12 UniRef50_A6QAM8 RNA-binding S4 protein n=6 Tax=Epsilonproteobact... 74 2e-12 UniRef50_C1SMC4 Ribosome-associated heat shock protein implicate... 73 3e-12 UniRef50_A7HLN2 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 73 4e-12 UniRef50_B5Y800 Heat shock protein 15 n=1 Tax=Coprothermobacter ... 73 4e-12 UniRef50_B9DKZ3 Putative uncharacterized protein n=1 Tax=Staphyl... 71 8e-12 UniRef50_B5EL81 RNA-binding S4 domain protein n=3 Tax=Acidithiob... 71 8e-12 UniRef50_C9RA17 RNA-binding S4 domain protein n=1 Tax=Ammonifex ... 71 8e-12 UniRef50_D1B612 RNA-binding S4 domain protein n=2 Tax=Synergista... 71 1e-11 UniRef50_UPI0001BC589E heat shock protein 15 n=3 Tax=Fusobacteri... 71 1e-11 UniRef50_A0NWS1 RNA-binding S4 n=1 Tax=Labrenzia aggregata IAM 1... 71 2e-11 UniRef50_B9TH32 Putative uncharacterized protein n=1 Tax=Ricinus... 70 2e-11 UniRef50_A8F4I8 RNA-binding S4 domain protein n=1 Tax=Thermotoga... 69 5e-11 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 68 7e-11 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 68 8e-11 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 68 8e-11 UniRef50_D2C7K9 RNA-binding S4 domain protein n=5 Tax=Thermotoga... 67 2e-10 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 67 2e-10 UniRef50_C5CFR5 RNA-binding S4 domain protein n=1 Tax=Kosmotoga ... 66 4e-10 UniRef50_A5TSN2 Ribosome-associated heat shock protein n=10 Tax=... 65 9e-10 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 64 1e-09 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 64 1e-09 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 63 4e-09 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 62 5e-09 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 61 8e-09 UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeot... 61 1e-08 UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B... 60 3e-08 UniRef50_UPI0001694F8C YabO n=1 Tax=Paenibacillus larvae subsp. ... 60 3e-08 UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglo... 60 3e-08 UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Le... 60 3e-08 UniRef50_A8RBL3 Putative uncharacterized protein n=1 Tax=Eubacte... 59 4e-08 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 59 5e-08 UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7... 58 6e-08 UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1... 58 9e-08 UniRef50_A4VTL3 Uncharacterized conserved protein, contains S4-l... 58 1e-07 UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacte... 58 1e-07 UniRef50_Q0FF40 Putative uncharacterized protein n=1 Tax=Rhodoba... 58 1e-07 UniRef50_A8LQY6 RNA-binding S4 n=1 Tax=Dinoroseobacter shibae DF... 57 2e-07 UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosae... 56 3e-07 UniRef50_A6Q7G3 Hemolysin A n=2 Tax=Epsilonproteobacteria RepID=... 56 3e-07 UniRef50_C0ABD6 Hemolysin A n=2 Tax=Verrucomicrobia RepID=C0ABD6... 56 4e-07 UniRef50_Q7VIT5 Putative uncharacterized protein n=2 Tax=Helicob... 55 7e-07 UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerof... 54 2e-06 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 54 2e-06 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 54 2e-06 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 51 8e-06 Sequences not found previously or not previously below threshold: UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 57 2e-07 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 56 3e-07 UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter... 56 3e-07 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 56 4e-07 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 55 6e-07 UniRef50_A8AW22 S4 domain n=3 Tax=Streptococcus RepID=A8AW22_STRGC 55 7e-07 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 55 7e-07 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 55 8e-07 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 55 9e-07 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 54 1e-06 UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis ... 54 1e-06 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 54 1e-06 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 53 2e-06 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 53 2e-06 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 53 2e-06 UniRef50_Q02WY5 Cell division protein, S4-like domain n=4 Tax=La... 53 3e-06 UniRef50_B9LA28 Hemolysin A n=7 Tax=Epsilonproteobacteria RepID=... 53 4e-06 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 53 4e-06 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 53 4e-06 UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei19... 52 5e-06 UniRef50_B9EB58 Putative uncharacterized protein n=1 Tax=Macroco... 52 5e-06 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 52 6e-06 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 52 6e-06 UniRef50_C2LQX1 RNA binding protein n=1 Tax=Streptococcus saliva... 52 6e-06 UniRef50_B7CAM4 Putative uncharacterized protein n=1 Tax=Eubacte... 51 8e-06 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 51 8e-06 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 51 9e-06 UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum ... 51 1e-05 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 51 1e-05 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 51 2e-05 UniRef50_UPI0001793647 PREDICTED: similar to RluA-2 CG6187-PA, p... 50 2e-05 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 50 2e-05 UniRef50_B5ZBT3 Ribosomal RNA large subunit methyltransferase J ... 50 2e-05 UniRef50_A5VJ39 RNA-binding S4 domain protein n=13 Tax=Lactobaci... 50 2e-05 UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acne... 50 2e-05 UniRef50_Q06803 Hemolysin A n=3 Tax=Brachyspira RepID=HLYA_TREHY 50 2e-05 UniRef50_Q2JUA0 Hemolysin A n=8 Tax=Cyanobacteria RepID=Q2JUA0_S... 49 3e-05 UniRef50_C7H0C7 Hemolysin A n=1 Tax=Eubacterium saphenum ATCC 49... 49 3e-05 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 49 3e-05 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 49 4e-05 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 49 4e-05 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 49 5e-05 UniRef50_C7N702 Hemolysin A n=1 Tax=Slackia heliotrinireducens D... 49 5e-05 UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular orga... 49 6e-05 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 49 6e-05 UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=pr... 49 6e-05 UniRef50_Q03QI1 Cell division protein, S4-like domain n=1 Tax=La... 48 7e-05 UniRef50_A8IBR4 Hemolysin A n=63 Tax=Alphaproteobacteria RepID=A... 48 7e-05 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 48 7e-05 UniRef50_A6WWC5 Hemolysin A n=9 Tax=Bacteria RepID=A6WWC5_OCHA4 48 8e-05 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 48 8e-05 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 48 8e-05 UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetace... 48 8e-05 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 48 8e-05 UniRef50_Q8EWQ3 Hemolysin n=1 Tax=Mycoplasma penetrans RepID=Q8E... 48 8e-05 UniRef50_Q3AAH6 S4 domain protein n=1 Tax=Carboxydothermus hydro... 48 8e-05 UniRef50_UPI000050FCA1 hypothetical protein BlinB_07935 n=1 Tax=... 48 9e-05 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 48 9e-05 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 48 1e-04 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 48 1e-04 UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/... 48 1e-04 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 48 1e-04 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 48 1e-04 UniRef50_Q1JCF2 Ribosomal large subunit pseudouridine synthase D... 48 1e-04 UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC ... 48 1e-04 UniRef50_UPI00016B2072 Hemolysin A n=3 Tax=candidate division TM... 48 1e-04 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 48 1e-04 UniRef50_C1C8Q1 YlmH protein n=28 Tax=Streptococcus RepID=C1C8Q1... 48 1e-04 UniRef50_C7NC29 Pseudouridine synthase n=2 Tax=Leptotrichia RepI... 48 1e-04 UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C... 48 1e-04 UniRef50_C1TMR7 Hemolysin A n=2 Tax=Synergistaceae RepID=C1TMR7_... 48 1e-04 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 47 1e-04 UniRef50_C1PB06 RNA-binding S4 domain protein n=1 Tax=Bacillus c... 47 2e-04 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 47 2e-04 UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Ta... 47 2e-04 UniRef50_C3L733 Ribosomal large subunit pseudouridine synthase, ... 47 2e-04 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 47 2e-04 UniRef50_Q8DVD5 Putative uncharacterized protein ylmH n=2 Tax=St... 47 2e-04 UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt1... 47 2e-04 UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepI... 47 2e-04 UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteri... 47 2e-04 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 47 2e-04 >UniRef50_C6WVI1 RNA-binding S4 domain protein n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WVI1_METML Length = 132 Score = 154 bits (390), Expect = 7e-37, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 78/130 (60%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M + + RLDKWLWAARF+KTR+LA I+ GKVH +G R KP+K V + T+ +R Sbjct: 1 MASEADSKCRLDKWLWAARFFKTRSLATTAIDTGKVHVDGDRVKPAKEVHIGQTIHIRNR 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + E V V+A++ R+ A EAALLY ET S+ KRE L + + RP K++ Sbjct: 61 DFEIEVTVQALSNVRKGAPEAALLYTETPASISKRENAKLTGEHDFAQRDRGAGRPTKRQ 120 Query: 121 RRDLLRFKHG 130 RD+ +F G Sbjct: 121 LRDIKKFTGG 130 >UniRef50_P0ACH0 Heat shock protein 15 n=250 Tax=cellular organisms RepID=HSLR_ECO57 Length = 133 Score = 151 bits (383), Expect = 5e-36, Method: Composition-based stats. Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG Sbjct: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE Sbjct: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 Query: 121 RRDLLRFKHGDSE 133 RRDLLRFKHGDSE Sbjct: 121 RRDLLRFKHGDSE 133 >UniRef50_D0FX09 Heat shock protein 15 n=2 Tax=Erwinia pyrifoliae RepID=D0FX09_ERWPY Length = 133 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 106/133 (79%), Positives = 119/133 (89%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 MKEK VRLDKWLWAARFYKTRA AR+MIEGGKVHYNGQRSKPSK+VE+ ATLTLRQG Sbjct: 1 MKEKTGEGVRLDKWLWAARFYKTRAAARQMIEGGKVHYNGQRSKPSKLVEIAATLTLRQG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 NDERTVIV A++++R PASEA LLY ETAES+ KREK+ALARK+NAL+MPHPDRRPDKKE Sbjct: 61 NDERTVIVAAVSDKRGPASEAQLLYSETAESIAKREKVALARKMNALSMPHPDRRPDKKE 120 Query: 121 RRDLLRFKHGDSE 133 RRDL++FKH E Sbjct: 121 RRDLMKFKHSGDE 133 >UniRef50_A0LDZ0 RNA-binding S4 domain protein n=2 Tax=Proteobacteria RepID=A0LDZ0_MAGSM Length = 130 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 1/130 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M +R+DKWLWAARF+KTRALA + + GG VH NGQR K S V++ L + +G Sbjct: 1 MSPSNEARLRIDKWLWAARFFKTRALATDAVNGGHVHLNGQRIKASHQVKVGDRLEITKG 60 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH-PDRRPDKK 119 + ++++ + ++R PA A LY E+ S + R +A ++ ++ P RP K+ Sbjct: 61 PVQFALVIEGLHDKRGPAPAAQQLYCESEASKQARVAVADQQRAERISRPDYGSARPTKR 120 Query: 120 ERRDLLRFKH 129 +RR + R K Sbjct: 121 DRRAMDRLKG 130 >UniRef50_Q0BI23 RNA-binding S4 domain protein n=59 Tax=Betaproteobacteria RepID=Q0BI23_BURCM Length = 157 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 63/130 (48%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + +P +R+DKWLWAARF+KTR+LA + ++ G V G KP+K V + + + Sbjct: 27 ISTEPGARLRIDKWLWAARFFKTRSLASDAVDKGHVKIGGAAVKPAKDVRVGDEVEIAID 86 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V I + R PAS A LY ET R R+ RP K++ Sbjct: 87 GVVWHIAVLGICDVRGPASIAQTLYAETEAGRVARLAELERRRTYREPAAELHGRPTKRD 146 Query: 121 RRDLLRFKHG 130 RR + RF G Sbjct: 147 RRIIDRFSGG 156 >UniRef50_B4RLH8 Ribosome-associated heat shock protein Hsp15 n=27 Tax=Neisseriaceae RepID=B4RLH8_NEIG2 Length = 133 Score = 148 bits (375), Expect = 4e-35, Method: Composition-based stats. Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 1/132 (0%) Query: 1 MKEK-PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ 59 MK+K + +RLDKWLWAARF+KTR+LA++ IE G+V NG + K SK +++ + L Sbjct: 1 MKDKHDSSAMRLDKWLWAARFFKTRSLAQKHIELGRVQVNGSKVKNSKTIDIGDIIDLTL 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 + + VK + QRRPA EA LLYEE A++ RE+ + + +T HPD RP K+ Sbjct: 61 NSLPHKIKVKGLNHQRRPAPEARLLYEEDAKTAALREECKQLDQFSRITSAHPDGRPTKR 120 Query: 120 ERRDLLRFKHGD 131 +RR L R K GD Sbjct: 121 DRRQLDRLKKGD 132 >UniRef50_D1W8V5 S4 domain protein n=2 Tax=Prevotella RepID=D1W8V5_9BACT Length = 159 Score = 148 bits (374), Expect = 5e-35, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 1/129 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K R+DKWLWAAR +KTR LA + + +V NG KPS +++ T+ +++ Sbjct: 11 LRVKDTGSARIDKWLWAARIFKTRTLAADACKNNRVSVNGVNVKPSHVIKPGETIDVKKP 70 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V EQR A +YE ++ + E + ++R + RP KK+ Sbjct: 71 PITYSFKVIKTIEQRVGAKFIPQIYENVTDAK-QYELLEMSRISGFVDRARGTGRPTKKD 129 Query: 121 RRDLLRFKH 129 RR + F Sbjct: 130 RRSMDAFVR 138 >UniRef50_D0L3C9 RNA-binding S4 domain protein n=31 Tax=Bacteria RepID=D0L3C9_GORB4 Length = 293 Score = 148 bits (374), Expect = 5e-35, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 R+D W+WA R KTR+ A GG V NG +KP++ V + +R ER V Sbjct: 2 STRVDAWIWAIRLTKTRSAAGAACRGGHVRVNGATAKPAQPVVPGDEVRVRLSGRERVVE 61 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V +R A AA Y + + RE +A + RP K+ERR L + Sbjct: 62 VTKTISKRVSAPMAAECYIDRSPPPPPREVVASQPR-----RDRGAGRPTKRERRQLDQL 116 Query: 128 KHG 130 + G Sbjct: 117 RGG 119 >UniRef50_Q2SPF7 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=15 Tax=Gammaproteobacteria RepID=Q2SPF7_HAHCH Length = 137 Score = 148 bits (373), Expect = 7e-35, Method: Composition-based stats. Identities = 71/131 (54%), Positives = 88/131 (67%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +VRLDKWLWAARFYKTR LA+E IEGG+VHYNG R KP ++VE A +TL+QG Sbjct: 5 ASATEHKVRLDKWLWAARFYKTRTLAKEAIEGGRVHYNGARVKPGRVVEAGAEVTLKQGW 64 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 E+TV+V I+E+R PA A LY+ET SVEKRE++A +K P RRP KK+R Sbjct: 65 SEKTVLVLDISEKRGPAPVAQKLYQETEASVEKREQLAWQQKQIQAAQLPPARRPTKKQR 124 Query: 122 RDLLRFKHGDS 132 R + RFK Sbjct: 125 RMIHRFKEQAE 135 >UniRef50_C5VMC9 Heat shock protein 15 n=1 Tax=Prevotella melaninogenica ATCC 25845 RepID=C5VMC9_9BACT Length = 140 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+DKWLWAAR YKTR++A + + G+V G KPS ++ +++++ + V Sbjct: 6 RIDKWLWAARIYKTRSIAADACKNGRVTIKGINVKPSHTIKAGEVVSVKKSPIIYSFKVL 65 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKH 129 EQR A +YE ++ + E + ++R + RP KK+RR + F Sbjct: 66 KPIEQRVGAKLIPEVYENVTDAK-QYELLEMSRISGFVDRARGTGRPTKKDRRQMDAFVD 124 >UniRef50_C9LEL6 Heat shock protein 15 n=5 Tax=Prevotella RepID=C9LEL6_9BACT Length = 152 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 RLDKWLWAAR +KTR LA + + G+V NG ++KP++ V++ +++R+ T +K Sbjct: 6 RLDKWLWAARIFKTRTLAADACKNGRVQINGAQAKPARSVKVGDRISVRKSPVTYTFRIK 65 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 + E+R A +YE E+ E + L++ + RP KK+RR L F Sbjct: 66 SAIEKRVGAKLLPDVYENITTP-EQYELLELSKISGFVNRARGTGRPTKKDRRALDEF 122 >UniRef50_B4F027 Heat shock protein 15 n=3 Tax=Proteus RepID=B4F027_PROMH Length = 137 Score = 145 bits (365), Expect = 6e-34, Method: Composition-based stats. Identities = 90/125 (72%), Positives = 101/125 (80%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 VRLDKWLWAARFYKTRA+AR MIEGGKVHYNG R KPSK VE+ A + LRQGNDE Sbjct: 5 SQESAVRLDKWLWAARFYKTRAIARTMIEGGKVHYNGVRGKPSKNVEVGAEIRLRQGNDE 64 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 RTV V ++ QR A++A LLY ET ES+ KREK+ALARK+NALTMPHP+RRPDKKERR Sbjct: 65 RTVTVLMVSAQRLGAAQAQLLYCETPESIAKREKIALARKMNALTMPHPERRPDKKERRT 124 Query: 124 LLRFK 128 LLR K Sbjct: 125 LLRLK 129 >UniRef50_A4XP72 RNA-binding S4 domain protein n=56 Tax=Gammaproteobacteria RepID=A4XP72_PSEMY Length = 170 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 72/132 (54%), Positives = 86/132 (65%), Gaps = 1/132 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M EK +VRLDKWLWAARFYKTRALA+ IEGGKVH+ G+R KP K + LR G Sbjct: 28 MSEKDDDKVRLDKWLWAARFYKTRALAKAAIEGGKVHHRGERCKPGKEPRIGDEYVLRTG 87 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 DERTV+V A++ RR A EA LLY ET ES+ +RE+ A RK AL M D RP KK+ Sbjct: 88 FDERTVVVLALSAVRRGAPEAQLLYRETDESIARREQAAAMRKAGALGM-QTDGRPSKKQ 146 Query: 121 RRDLLRFKHGDS 132 RR + +F Sbjct: 147 RRQIHQFNEQQE 158 >UniRef50_Q7MQ01 Ribosome-associated heat shock protein n=3 Tax=Gammaproteobacteria RepID=Q7MQ01_VIBVY Length = 130 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 83/127 (65%), Positives = 102/127 (80%), Gaps = 1/127 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 P VRLDKWLWAARFYKTR++AR+M++GGKVHYNGQR+KPSKIVE+ A L LRQGN+ Sbjct: 4 SSPNEAVRLDKWLWAARFYKTRSIARDMVDGGKVHYNGQRAKPSKIVEVGAVLKLRQGNE 63 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 E+TV+++ ++ QRR A EA LY ET ES KRE A+ RKLNA P PDRRPDKK+RR Sbjct: 64 EKTVVIEKLSTQRRGAPEAQTLYSETQESQAKREAQAMQRKLNAHN-PSPDRRPDKKQRR 122 Query: 123 DLLRFKH 129 D+++FKH Sbjct: 123 DIIKFKH 129 >UniRef50_Q15ZC8 RNA-binding S4 n=19 Tax=Gammaproteobacteria RepID=Q15ZC8_PSEA6 Length = 138 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 71/125 (56%), Positives = 88/125 (70%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 VRLDKWLWAARF+KTRALARE + GKV YNGQR KPSK VEL T+ + QG D + Sbjct: 13 TEQSVRLDKWLWAARFFKTRALAREAVMSGKVSYNGQRCKPSKAVELKVTIKVPQGYDVK 72 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 +IV + E RR A A ++EET ES+ +REK A RKL+A P PD+RPDKK+RR + Sbjct: 73 EIIVVELAEHRRSAPLAQRMFEETPESLAQREKNAEMRKLSAFHSPKPDQRPDKKQRRQI 132 Query: 125 LRFKH 129 ++ KH Sbjct: 133 IQLKH 137 >UniRef50_Q7MXL0 Heat shock protein 15 n=32 Tax=Bacteroidales RepID=Q7MXL0_PORGI Length = 145 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 EVR+D+W+WA R +KTR +A + + +V NG ++KPS++V + + +R+ + Sbjct: 1 MEEVRIDRWMWATRIFKTRTIATDACKKSRVTVNGLQAKPSRMVRVGDVIQVRKPPVTYS 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 + A+ + R A E E+ E + + R + RP KK+RR+L Sbjct: 61 FRILALAQNRMGAKLVKDFLENITPP-EEYEILEMQRISGFVDRAKGTGRPTKKDRRELE 119 Query: 126 RFKHGDSE 133 +F + Sbjct: 120 QFSEEMPD 127 >UniRef50_B3PHB2 Heat shock protein 15 n=9 Tax=Proteobacteria RepID=B3PHB2_CELJU Length = 149 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 67/127 (52%), Positives = 88/127 (69%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + ++R+DKWLWAARF+KTR+LA++ I+GGK+H +GQR K SK V + L +RQ D Sbjct: 15 DADDDKIRIDKWLWAARFFKTRSLAKQAIDGGKIHCDGQRIKASKEVTIGLVLNIRQDWD 74 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 E+TV+VKA+++QRR A EAALLY ET SV REK L RK D RP+KKERR Sbjct: 75 EKTVVVKALSDQRRGAPEAALLYAETEASVALREKRRLERKAGLGAFIVSDHRPNKKERR 134 Query: 123 DLLRFKH 129 + RF+ Sbjct: 135 QIHRFQR 141 >UniRef50_D0J2J0 RNA-binding S4 n=5 Tax=Bacteria RepID=D0J2J0_COMTE Length = 158 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 53/130 (40%), Positives = 74/130 (56%), Gaps = 4/130 (3%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 +RLDKWLW ARFYKTR+LA E I G+V N +K S+ + + LRQGN Sbjct: 13 MSETESMRLDKWLWCARFYKTRSLAVEEIGKGRVTVNNANAKASREIRPGDHIHLRQGNI 72 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARK----LNALTMPHPDRRPDK 118 R VIV+ ++ R PA A LYEETA+S+ +RE++A R+ RP K Sbjct: 73 PREVIVRGLSGMRGPAPVAQQLYEETAQSIAQREQLAEQRRLAPEPAEALAAQHTGRPTK 132 Query: 119 KERRDLLRFK 128 ++RR++ R + Sbjct: 133 RDRREIDRVR 142 >UniRef50_D0LZ35 RNA-binding S4 domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ35_HALO1 Length = 167 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 VRLDKWLWAARF+KTR+LA + + GGKV NG KP+K V++ L +R+G Sbjct: 34 ASAVGERVRLDKWLWAARFFKTRSLAAQEVTGGKVQLNGDHVKPAKPVKVGDVLRIRKGM 93 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP-----DRRP 116 E + V + +R P ++A LYEE+ S + RE++A +L P RP Sbjct: 94 FEHEITVIKLGARRGPPAQAQGLYEESEASKQAREELAERLRLEREHSLPPIPKFAKGRP 153 Query: 117 DKKERRDLLRFKH 129 K++RR + RFK Sbjct: 154 TKRDRRQIDRFKG 166 >UniRef50_Q1H1V4 RNA-binding S4 n=2 Tax=Proteobacteria RepID=Q1H1V4_METFK Length = 131 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 82/129 (63%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + + RLDKWLWAARF+KTR+LA E ++ GKVH +G R KP+K V L + +R+ Sbjct: 2 SEQESKCRLDKWLWAARFFKTRSLASEAVDTGKVHVDGDRVKPAKEVRLGQRIHIRRKEM 61 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 E V+V+ ++ QRR A EAALLYEET ES+ +RE + + R+ RP K++RR Sbjct: 62 EVEVVVRGLSTQRRGAPEAALLYEETPESISRRENLTVTREHEHARRERGMGRPTKRQRR 121 Query: 123 DLLRFKHGD 131 D+ +F D Sbjct: 122 DIKKFTGID 130 >UniRef50_C6X0Q5 Ribosome-associated heat shock protein n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Q5_FLAB3 Length = 149 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 1/124 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW RFYKTR++A I+ ++ +K SK V L + +R+ + + V Sbjct: 1 MRIDKFLWCVRFYKTRSIAAAEIKKNRISVGNNVAKSSKEVTLGDVIKIRKNQIDYQIKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 I + R L E+ + E+ E + L + RP KK+RR + F Sbjct: 61 LQIPKSRMGPKLVPLHIEDKTD-KEQYEILKLRNLNQDYYRNRGEGRPTKKDRRSMDDFI 119 Query: 129 HGDS 132 GD Sbjct: 120 DGDG 123 >UniRef50_A9BZ53 RNA-binding S4 domain protein n=8 Tax=Bacteria RepID=A9BZ53_DELAS Length = 149 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 4/134 (2%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 +RLDKWLW ARFYKTR+LA E I G++ NG KP++ V T+ LRQG Sbjct: 1 MTDIESMRLDKWLWCARFYKTRSLAVEEIGKGRITVNGALVKPAREVRCGDTVALRQGQI 60 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALT----MPHPDRRPDK 118 RTV+++ ++ R PA A LYEETA S+ +RE++A R+L D RP K Sbjct: 61 PRTVVIRGLSGMRGPAPVAQALYEETAASLAERERLAEQRRLAPEPASSIADQHDGRPTK 120 Query: 119 KERRDLLRFKHGDS 132 ++RR + + + S Sbjct: 121 RDRRQIDQVRERGS 134 >UniRef50_C6P442 RNA-binding S4 domain protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P442_9PROT Length = 144 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 2/127 (1%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 + ++R+DKWLWAARF+KTR+LA + +E GKV G R KP+K + + L +R G Sbjct: 7 QADDKLRIDKWLWAARFFKTRSLAVDAVESGKVTMGGVRIKPAKAIVVGDQLDIRLGQYH 66 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 + V A+ +R PA+EA LY E+ ES +R ++A K AL P RP K++RRD Sbjct: 67 FAIEVLALANRRGPAAEAQKLYRESDESRARRAEIAANLK--ALPQPTFKGRPTKRDRRD 124 Query: 124 LLRFKHG 130 + RF+ G Sbjct: 125 IERFEAG 131 >UniRef50_Q500C9 RNA-binding S4 n=13 Tax=Gammaproteobacteria RepID=Q500C9_PSEU2 Length = 135 Score = 140 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K + +VRLDKWLWAARF+KTRALA+ IE GKVH G+R KP K + +R G Sbjct: 4 KMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIRMGF 63 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 D+RTV+V+A++ RR A EA LY ET ES+ +RE A RK L + D +P KK+R Sbjct: 64 DDRTVVVEALSIVRRGAPEAQTLYHETPESIARRENAAAQRKAGNLGV-TTDGKPTKKQR 122 Query: 122 RDLLRFKHGD 131 R+L F+ Sbjct: 123 RELFGFRASQ 132 >UniRef50_Q1YS11 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit n=2 Tax=Proteobacteria RepID=Q1YS11_9GAMM Length = 124 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 1/125 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 +VR+DKWLWAARF+KTR+LA+ IEGGKV +G +SK S+ +EL LT+RQG D +T Sbjct: 1 MDKVRIDKWLWAARFFKTRSLAKSAIEGGKVQIDGNKSKASRQLELGTILTIRQGFDSKT 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V ++EQRR A EA LLY ETAES+ REK + RK + D +P+KK+RR + Sbjct: 61 VEVIGLSEQRRGAPEALLLYTETAESIALREKDSALRKAANGSSIS-DGKPNKKQRRQIH 119 Query: 126 RFKHG 130 RF Sbjct: 120 RFLSN 124 >UniRef50_B9Z2X0 RNA-binding S4 domain protein n=2 Tax=Neisseriaceae RepID=B9Z2X0_9NEIS Length = 136 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 60/129 (46%), Positives = 79/129 (61%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +VRLDKWLWAARFYKTR LA E +E G+V G+R K S++V++ L LR Sbjct: 7 APDEEGKVRLDKWLWAARFYKTRQLAHEALELGRVTLGGERVKASRVVKVGDRLHLRINQ 66 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 E + V+ +T QRR ASEA LLY E+ S RE+ K ++ PH RP KK+R Sbjct: 67 LEYDIEVRTLTAQRRSASEAQLLYAESEASRLAREEKQALLKAERVSFPHGAGRPTKKDR 126 Query: 122 RDLLRFKHG 130 R++ RFK+G Sbjct: 127 REIQRFKNG 135 >UniRef50_Q3ILP1 Heat shock protein 15, DNA/RNA-binding n=12 Tax=Proteobacteria RepID=Q3ILP1_PSEHT Length = 140 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 75/128 (58%), Positives = 100/128 (78%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K +++RLDKWLWAARFYKTRA AREM++GGKVHYNGQR+K KIVE+ AT+ L QG Sbjct: 11 LEHKDELKIRLDKWLWAARFYKTRAAAREMVQGGKVHYNGQRTKAGKIVEIGATIKLAQG 70 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 DE+ V V I E+R+ A A LY+E+ S+ KRE+ ++ARK N+L PHPD++PDKK+ Sbjct: 71 VDEKIVTVLKILEKRQSAPIAQTLYQESDASIAKREENSIARKNNSLFAPHPDKKPDKKQ 130 Query: 121 RRDLLRFK 128 RR+LL+ K Sbjct: 131 RRELLKLK 138 >UniRef50_B5JS43 RNA-binding S4 domain protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JS43_9GAMM Length = 134 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 59/132 (44%), Positives = 81/132 (61%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +K +RLDKWLWAARFYKTR+LA I GG VH N +R KP+K ++ + +R+G Sbjct: 3 ADKSLQTLRLDKWLWAARFYKTRSLATAAISGGHVHLNSERIKPAKTLKCGDEVRIRKGQ 62 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 E T++V+AI+++R PA+ A LY ETAES KRE+ + +P RPDK + Sbjct: 63 MEITIVVEAISDRRGPAAVAQTLYRETAESQIKREQDKSQIRAERAALPTTRGRPDKHTQ 122 Query: 122 RDLLRFKHGDSE 133 R+L R K E Sbjct: 123 RELRRLKKEQGE 134 >UniRef50_C5V1W3 RNA-binding S4 domain protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1W3_9PROT Length = 129 Score = 138 bits (349), Expect = 4e-32, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++R+DKWLWAARFYKTR+LA IE G+V +G R KP+K + + L G Sbjct: 2 SDTTKKLRIDKWLWAARFYKTRSLALHAIENGRVLMDGVRVKPAKTIATGDHIVLHFGQA 61 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 + + V A++++R PA A LY E+ ES +R MA ++ RP KK+RR Sbjct: 62 KFDIEVLALSDKRGPAPVAHQLYRESDESAARRALMAEQHRMQPEI-AVFKYRPTKKDRR 120 Query: 123 DLLRFKHGD 131 ++ +F++G+ Sbjct: 121 EIEKFRNGE 129 >UniRef50_C7RIC4 RNA-binding S4 domain protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RIC4_9PROT Length = 134 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 68/122 (55%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DKWLW ARFYKTR+LA + I G V G KP++ + +L + G+ +V+V Sbjct: 12 IRIDKWLWTARFYKTRSLAAQAIAAGHVRLAGHPVKPARDLRCGDSLEIAIGDTIWSVVV 71 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + + EQRRPA EA LYEET S E+R R L + RP KK RR + F Sbjct: 72 RGLNEQRRPAVEAQQLYEETRASSERRATQRETRLLAPVPGSDLRGRPTKKARRQIRGFN 131 Query: 129 HG 130 G Sbjct: 132 EG 133 >UniRef50_C6Y288 RNA-binding S4 domain protein n=4 Tax=Sphingobacteriaceae RepID=C6Y288_PEDHD Length = 132 Score = 138 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++R+DK+LWA R +KTR+LA E + G+V + GQ KPS IV+ + +G + Sbjct: 1 MTEQEKLRIDKYLWAIRLFKTRSLATEACKAGRVKFKGQNLKPSAIVKPGDVYQVSKGIE 60 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 ++ + V + R A A Y++ VE+ L RP KK+RR Sbjct: 61 KKMIEVVELLYNRVEAKIAVTKYKDVT-PVEETHAFKSMFHAPTLKRDRGTGRPTKKDRR 119 Query: 123 DLLRFKHGDSE 133 + G E Sbjct: 120 ETDDLIGGMFE 130 >UniRef50_C2MAE5 Heat shock protein 15 n=8 Tax=Bacteria RepID=C2MAE5_9PORP Length = 166 Score = 137 bits (346), Expect = 9e-32, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 VR+D +LWA R +KTR++A++ G+V N +KP+K+V + +++R+ + Sbjct: 4 PVRIDSFLWAVRLFKTRSIAQDACRKGRVAINDVTAKPAKMVMMGDIISVRKPPVTLSFK 63 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 V T R A Y E+ E + L R + RP K+ERRDL +F Sbjct: 64 VLQTTANRMGAKLVPE-YILNVTPPEQYELLELKRMSGYVDRAQGLGRPTKRERRDLEQF 122 >UniRef50_Q0EYY2 Heat shock protein 15 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYY2_9PROT Length = 129 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 60/126 (47%), Positives = 81/126 (64%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTV 66 VR+DKWLWAARF+KTR LA EM+ GG V NG R+K S+ V++ TL++++ + V Sbjct: 4 QSVRIDKWLWAARFFKTRGLATEMVSGGHVQINGDRAKASRAVQVGDTLSIQREQELFIV 63 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 V + E+R A+ A LY+ETA SV R RKL+A + P P+RRPDKK RR ++R Sbjct: 64 TVTGLAEKRGSATIAQTLYQETAASVAARATQQQLRKLHAASAPAPERRPDKKARRQIIR 123 Query: 127 FKHGDS 132 F D Sbjct: 124 FTRRDD 129 >UniRef50_A6VR83 RNA-binding S4 domain protein n=3 Tax=Gammaproteobacteria RepID=A6VR83_MARMS Length = 138 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 68/128 (53%), Positives = 87/128 (67%), Gaps = 1/128 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K+ VRLDKWLWAARF+KTR+L ++ I+GGKV YNG + K S+ VE+ A + +R G Sbjct: 6 KQSAPQAVRLDKWLWAARFFKTRSLCKDAIDGGKVSYNGSKGKASRNVEIGALIGIRVGW 65 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 DE+ V +K I+ QRR A EA LLYEET ES+EKREK AL K D +P+KKER Sbjct: 66 DEKVVKIKDISGQRRGAPEAQLLYEETPESIEKREKRALENKS-FGGRIMSDHKPNKKER 124 Query: 122 RDLLRFKH 129 RD+ + K Sbjct: 125 RDIKQLKK 132 >UniRef50_A0M418 Protein containing RNA-binding S4 domain n=18 Tax=Bacteroidetes RepID=A0M418_GRAFK Length = 139 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW R++KTR++A + GKV + KPSK V L +R+ + + Sbjct: 1 MRVDKFLWCVRYFKTRSIATNACKQGKVRLEDEILKPSKDVFPGDKLRVRKNQINYEIEI 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 + + R A LY E EK+ L + RP KK+RRD+ + Sbjct: 61 LDLPKSRVGAKLV-NLYLHDITPKEAFEKLELLKYSKDYYRKKGTGRPTKKDRRDIDDWF 119 Query: 129 HGDSE 133 + Sbjct: 120 DNAGD 124 >UniRef50_C7PRL2 RNA-binding S4 domain protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRL2_CHIPD Length = 141 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K K +VRLDK+LW+ R +K+R+LA E G+V NG K ++ V LN +R Sbjct: 10 KMKEVEKVRLDKYLWSIRIFKSRSLASAGCEAGRVKMNGVTVKAARNVALNDVYEIRTEG 69 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 + + V A+ R +EA Y + +K ++ A P RP KKER Sbjct: 70 RKWVIQVTALLANRVQYTEAIKFYNDITPEEDKAQE-RQASVFQTGKRPSKIGRPTKKER 128 Query: 122 RDLLRFKHGDSE 133 R+L F G+ + Sbjct: 129 RELDDFMGGEED 140 >UniRef50_B6R6S6 RNA-binding S4 n=3 Tax=Alphaproteobacteria RepID=B6R6S6_9RHOB Length = 133 Score = 136 bits (344), Expect = 1e-31, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSK-IVELNATLTLRQGND 62 +P +R+DKWLW AR K+R LA+++ G V N ++ +K V+ LT+ Sbjct: 5 EPQGSIRIDKWLWYARITKSRTLAQKLAVSGHVRLNKEKVSAAKAAVKPGDVLTITMPRR 64 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 + V + +R PA EA +LYE+ + +E A RP KK+RR Sbjct: 65 LLILKVLKLGTRRGPAPEAQMLYEDMSPPPPPKETQA-----PVAQREAGAGRPTKKDRR 119 Query: 123 DLLRFKH 129 + R + Sbjct: 120 QIARIRG 126 >UniRef50_C0YT05 Heat shock protein 15 n=2 Tax=Flavobacteriaceae RepID=C0YT05_9FLAO Length = 145 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+LW+ RFYKTR++A E I+ +V K SK V+ T+ +R+ + + V Sbjct: 1 MRIDKFLWSIRFYKTRSIAAEEIKKNRVSIGTSAVKSSKEVKEGDTIKIRKNQIDYKIKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFK 128 I + R A L ++ + E+ E + L + + RP KK+RR++ + Sbjct: 61 IQIPKSRIGAKLVPLHIQDVTD-KEQYELLKLRKMSQDYYRNKGEGRPTKKDRREMDEYV 119 Query: 129 HGDSE 133 D + Sbjct: 120 GNDID 124 >UniRef50_A6T2N5 Heat shock protein 15 n=3 Tax=Proteobacteria RepID=A6T2N5_JANMA Length = 126 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 72/122 (59%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 VRLDKWLWAARF+KTR+LA + ++ GKV +R KP++ V+ L + G+ Sbjct: 2 ATENVRLDKWLWAARFFKTRSLATDAVDKGKVRLEQERIKPARTVKCGDLLQIDNGSTVW 61 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 V+V+A+++ R A A LY ET +S+++R++ A RK RP K++RR L Sbjct: 62 EVVVQALSDVRGSAEMAQKLYAETEQSLKQRQQDADQRKFFREPGLGIKGRPTKRDRRLL 121 Query: 125 LR 126 + Sbjct: 122 DK 123 >UniRef50_B9XC61 RNA-binding S4 domain protein n=2 Tax=Verrucomicrobia RepID=B9XC61_9BACT Length = 125 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 55/125 (44%), Gaps = 1/125 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 VR+DKWLWA R +KTR+LA G V G KP++ V +N + R G+ Sbjct: 1 MDATQSVRIDKWLWAVRLFKTRSLAMAACRSGHVRVGGHPVKPAREVRINDVIEARTGDI 60 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 RTV V + QR A E+ + + EK P RP KK+RR Sbjct: 61 TRTVKVLGLLHQRVGAQAVKEHAEDLTPA-SEYEKRKELVLEPMFYRPKGTGRPTKKDRR 119 Query: 123 DLLRF 127 + + Sbjct: 120 SMEKL 124 >UniRef50_Q1QAQ6 RNA-binding S4 n=5 Tax=Moraxellaceae RepID=Q1QAQ6_PSYCK Length = 146 Score = 134 bits (338), Expect = 8e-31, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 88/135 (65%), Gaps = 6/135 (4%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 AV +RLDKWLWAARFY+TR LA+E IE G+VHY G R+K SK + + L +RQG+ Sbjct: 14 SNPDAVRMRLDKWLWAARFYRTRTLAKEAIESGRVHYAGSRAKTSKEITVGDELQIRQGS 73 Query: 62 ----DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPD 117 E+TV+V+A+T QR A+ A +LY ET ES+ +R A RKL L P D +P+ Sbjct: 74 ATAMTEKTVVVEALTAQRGNATAAEVLYSETEESIARRAYYAEQRKLANLARP--DNKPN 131 Query: 118 KKERRDLLRFKHGDS 132 KKERRDL RFK Sbjct: 132 KKERRDLHRFKSNQD 146 >UniRef50_C4ZJ47 RNA-binding S4 domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4ZJ47_THASP Length = 133 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 57/126 (45%), Positives = 76/126 (60%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDKWLWAARF+K R A E ++GGKV NG +KP++ +++ L + G D Sbjct: 7 SDTARTRLDKWLWAARFFKHRTGATEAVDGGKVKLNGMAAKPARELKVGDRLDITIGEDT 66 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 RTVIV+AI ++R A+ A LYEETAES+E RE+ RK A RP K++RR Sbjct: 67 RTVIVRAIADKRGSAAVAQALYEETAESIEARERARELRKFAAAPGADLHGRPTKRDRRR 126 Query: 124 LLRFKH 129 + RF Sbjct: 127 MDRFGG 132 >UniRef50_D2NQJ7 Ribosome-associated heat shock protein n=6 Tax=Actinomycetales RepID=D2NQJ7_9MICC Length = 130 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 5/127 (3%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 RLD WLW+ R +KTR+LA + +GG V N +KPS+ ++ + +R ER Sbjct: 8 ALTSARLDLWLWSVRIFKTRSLAADECKGGHVRVNDAPAKPSQKLKKGDIVKVRYPGWER 67 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 V+ + +R A A YE+ + RP KKERR L Sbjct: 68 VFKVEKLLVKRVGAPIAVTCYEDLSGPRPAY-----LSMPPVAKRERGSGRPTKKERRAL 122 Query: 125 LRFKHGD 131 + Sbjct: 123 DELRGRG 129 >UniRef50_Q0AD54 RNA-binding S4 domain protein n=3 Tax=Nitrosomonas RepID=Q0AD54_NITEC Length = 136 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 57/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 + ++R+DKWL+AARFYKTR+ A + +E G+V NG R KPS+I+ ++ L +R G Sbjct: 6 AQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLDIRIGP 65 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNA-LTMPHPDRRPDKKE 120 V V A++ QRR A+EA LLY+ET ES + RE +A K RP K+ Sbjct: 66 YHHRVKVLALSNQRRSATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGRPTKRV 125 Query: 121 RRDLLRFKHG 130 RRDL RF G Sbjct: 126 RRDLERFVDG 135 >UniRef50_Q01Z85 RNA-binding S4 domain protein n=4 Tax=Bacteria RepID=Q01Z85_SOLUE Length = 135 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 49/130 (37%), Positives = 75/130 (57%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ P VR+DKWLWAARF+KTR+LA + E G++ NGQ +K ++ V L +R Sbjct: 5 VENSPMDGVRMDKWLWAARFFKTRSLASKACELGRIESNGQPAKAAREVRAGDMLRVRNE 64 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V+V +++ R PA+ A LLY ET S E R K+A R++ + RP K++ Sbjct: 65 GGDFEVLVLGVSDMRGPAALAQLLYRETEASRELRLKLAEERRMQPSFENTREGRPSKRD 124 Query: 121 RRDLLRFKHG 130 RR + R + Sbjct: 125 RRVMGRLRGR 134 >UniRef50_C9YFQ6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFQ6_9BURK Length = 319 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 54/121 (44%), Positives = 75/121 (61%), Gaps = 1/121 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 R+DKWLWAARF+KTR+LA + + G+V + G+ KP+K V+ TLT+ QG +RT Sbjct: 1 MQSTRIDKWLWAARFFKTRSLATDEVNLGRVQWEGRDVKPAKEVKAGDTLTIWQGKVKRT 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPD-RRPDKKERRDL 124 V V I+EQR PA A L+Y ET ESV++R A ++L+ RP K++RR L Sbjct: 61 VEVLQISEQRGPAPVAQLMYAETPESVQQRLAAAEQQRLSPEPAHTIAGGRPTKRDRRAL 120 Query: 125 L 125 Sbjct: 121 Q 121 >UniRef50_Q0A9G5 RNA-binding S4 domain protein n=3 Tax=Ectothiorhodospiraceae RepID=Q0A9G5_ALHEH Length = 136 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 63/131 (48%), Positives = 85/131 (64%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++P +VRLD+WLWAARF+KTR LA E I+GGKV +G +KP++ V + +R+G Sbjct: 6 DQPTAKVRLDRWLWAARFFKTRRLAVEAIKGGKVEVDGVNAKPAREVGAGNRVRVRKGAI 65 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 V+V+ + QR PA A LYEET ESV REK+ +++NA +P PD RPDK+ RR Sbjct: 66 TFEVVVRDVANQRGPAKVAQQLYEETPESVAAREKVREQQRMNAAFVPRPDHRPDKRSRR 125 Query: 123 DLLRFKHGDSE 133 L R K G E Sbjct: 126 QLARVKRGGGE 136 >UniRef50_Q31JR0 RNA-binding S4-domain protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31JR0_THICR Length = 125 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 2/127 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 VR+DKWLWAARF+KTR +A + ++GGKV NG + KPSK + L + Q + + Sbjct: 1 MDRVRIDKWLWAARFFKTRGVALDAVKGGKVELNGSKPKPSKQICEGDKLKITQPHRKVE 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V IT++R A A LY+ E + + K A RP K++RR + Sbjct: 61 VTVIGITDKRGSAEAAETLYQLDVEVLNQ--KTPSPLLALAGYREKGKGRPTKRDRRKIE 118 Query: 126 RFKHGDS 132 + + Sbjct: 119 QLSFNEE 125 >UniRef50_B2UBP9 RNA-binding S4 domain protein n=11 Tax=cellular organisms RepID=B2UBP9_RALPJ Length = 132 Score = 131 bits (329), Expect = 8e-30, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 70/129 (54%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + A VR+DKWLWAARF+KTR+ A + +E G+V N Q +P+K V++ + + Sbjct: 3 VSTDAADRVRIDKWLWAARFFKTRSQATDAVERGRVQINDQAVRPAKDVKIGDRVRVHAH 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + V V A+ E R PAS A LY ET S KRE+ A R+L RP K++ Sbjct: 63 EQQWEVEVLALAEVRGPASVAQTLYAETDTSRLKREENADKRRLYREPATQIAGRPTKRD 122 Query: 121 RRDLLRFKH 129 RR + + Sbjct: 123 RRRIDKLGG 131 >UniRef50_B8GNB4 RNA-binding S4 domain protein n=7 Tax=Proteobacteria RepID=B8GNB4_THISH Length = 125 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 59/124 (47%), Positives = 75/124 (60%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 R+DKWLWAARF+KTRALA E + GGKVH G+R KP++ V L + +G + Sbjct: 1 MDSQRIDKWLWAARFFKTRALAAEAVSGGKVHVGGERVKPARAVRPGEHLRITRGQETWE 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V + + EQRRPA+EA LY E ES +RE A R+L PH D RPDK+ERR L Sbjct: 61 VEILGLNEQRRPAAEAQRLYAERPESRARREAEAEQRRLLHAATPHMDHRPDKRERRQLR 120 Query: 126 RFKH 129 + Sbjct: 121 KLLG 124 >UniRef50_C1A9Y0 Heat shock protein 15 n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Y0_GEMAT Length = 147 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 54/125 (43%), Positives = 75/125 (60%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 P VRLDKWLWAARFYKTRALA E I+GGK NG+R+K +K V+ + LRQG E Sbjct: 21 PVERVRLDKWLWAARFYKTRALAAEAIDGGKADVNGERAKRAKPVQAGDEVRLRQGPIEW 80 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + + ++ +R A A LYEET + +RE+++ + + D +P K++RR L Sbjct: 81 CLKILDVSARRGSAEIARQLYEETEDGRVRRERVSEHLRSMPTGFAYGDSKPGKRDRRAL 140 Query: 125 LRFKH 129 R K Sbjct: 141 RRLKG 145 >UniRef50_A0K0Y7 RNA-binding S4 domain protein n=12 Tax=Actinobacteria (class) RepID=A0K0Y7_ARTS2 Length = 127 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 6/126 (4%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 VR+D WLWA R YKTR+ A G V NG +K S+ + T+ +RQ E Sbjct: 6 SAPATVRIDAWLWAIRAYKTRSAATAACRAGHVRLNGNPAKASQSLVPGDTVRVRQPGYE 65 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 R + V+ + +R A AA + + + L + RP KK+RR+ Sbjct: 66 RILEVRRLIAKRVGAEAAAHCFTDHTPPRPVAPALGLPQ------RDRGTGRPTKKDRRE 119 Query: 124 LLRFKH 129 + R + Sbjct: 120 MERLRG 125 >UniRef50_C6QEU6 RNA-binding S4 domain protein n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QEU6_9RHIZ Length = 134 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 2/126 (1%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 R+D+WLW AR K+R LA+++I GKV N ++ KPS +V+ +TL G R+ Sbjct: 8 SSQRVDQWLWFARITKSRTLAQDLISRGKVRLNREKIDKPSTLVKPGDVITLVVGPAVRS 67 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKL-NALTMPHPDRRPDKKERRDL 124 + + I +R PA+EA L+ + + E +A + + P RP K++RR + Sbjct: 68 LEIVGIGHRRGPATEAQSLFLDHTPPKVRPEAAEIAMQPKQSAVRPEGSGRPTKRDRRQI 127 Query: 125 LRFKHG 130 + K Sbjct: 128 DKLKGR 133 >UniRef50_C7LE02 S4 domain protein n=38 Tax=Rhizobiales RepID=C7LE02_BRUMC Length = 137 Score = 128 bits (322), Expect = 5e-29, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 9/131 (6%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M + A R+DKWL+ AR K+R+LA ++ GGKV N + + + V++ LT+ Sbjct: 14 MAAEKAARQRIDKWLFFARVVKSRSLAAKLAVGGKVRVNRDKIEQAAYQVKVGDVLTITL 73 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 V A E+R PA EA LLYE+ + S + A RP KK Sbjct: 74 DRRILVYKVLAPGERRGPAPEAQLLYEDLSPSPAASTETAQ--------RESGAGRPTKK 125 Query: 120 ERRDLLRFKHG 130 ERR++ R + G Sbjct: 126 ERRNIDRLREG 136 >UniRef50_UPI000050FC77 heat shock protein Hsp15 n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC77 Length = 138 Score = 128 bits (321), Expect = 7e-29, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + P VR+D WLW R +KTR LA + GG V GQR K ++ V + + +R+ Sbjct: 3 IDRSPGKHVRVDVWLWTTRMFKTRNLATQACRGGHVQVEGQRVKAAQKVSIGQEVRVRKA 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 E + R AS AA YE+ + + + R RP KK+ Sbjct: 63 GTEFIWKITGFIPTRPQASIAAQCYEDLTPPPDPALRGFVPR------RDKGMGRPTKKD 116 Query: 121 RRDLLRFKH 129 RR++ +F Sbjct: 117 RREMEKFLG 125 >UniRef50_A6G6M5 Putative uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G6M5_9DELT Length = 124 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 M + P VR+DKWLWAAR +KTR+ A G V +G+ K SK V+ + + Sbjct: 1 MADAP-KSVRIDKWLWAARMFKTRSSASTACSAGHVKIDGESVKASKGVKPGDRIDVLTP 59 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 R + V A+ E+R PAS A LY + + +E+ ++ RP KKE Sbjct: 60 GGPRELEVVALGERRGPASVARTLYVDHTPAPPPKEE-----RVVVAERERGAGRPKKKE 114 Query: 121 RRDLLRFKH 129 R+L + + Sbjct: 115 LRELRKLRG 123 >UniRef50_Q0S6G3 Ribosome-associated heat shock protein n=7 Tax=Actinomycetales RepID=Q0S6G3_RHOSR Length = 144 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 5/129 (3%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + VR+D W WA R +KTR+ A G V NG +KP++ V+ + +R Sbjct: 20 ISGTDPASVRVDSWTWATRLFKTRSAAAAACRSGHVRVNGTTAKPAQPVKAGDEVRVRAA 79 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 ER V V +R A A Y + RE +A + RP K+E Sbjct: 80 GVERIVEVVRPITKRVGAVVAVECYTDNTPPPPPREVLA-----SIPQRDRGAGRPTKRE 134 Query: 121 RRDLLRFKH 129 RR++ R + Sbjct: 135 RREMDRLRG 143 >UniRef50_A5EY77 Ribosome-associated heat shock protein n=2 Tax=Cardiobacteriaceae RepID=A5EY77_DICNV Length = 139 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 52/123 (42%), Positives = 79/123 (64%), Gaps = 1/123 (0%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER-T 65 VRLD+WLWAARF+KTR +A + I+ G+V NGQR+KP++ + + TLT+++ + Sbjct: 15 ETVRLDQWLWAARFFKTRPVAVQNIKNGRVLVNGQRAKPARTISVGDTLTIQKTPELCFE 74 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V V A+ +R A A LY+ET S+ R+++AL ++L + P RRPDK+ERR L Sbjct: 75 VNVLALENKRLGAKLATALYQETEASIHNRQELALRQQLAKSLVQFPTRRPDKRERRALR 134 Query: 126 RFK 128 + Sbjct: 135 SLR 137 >UniRef50_C0BJS5 RNA-binding S4 domain protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BJS5_9BACT Length = 130 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 1/117 (0%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D++LW R +K+R LA + + G+V NGQ+ KPS+ + + + +R+ RT V Sbjct: 1 MRVDQYLWCIRLFKSRNLASTICKKGQVKVNGQKVKPSREILPHDQIEVRKDQLWRTFEV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 I + R A LY E L ++ RP KK+RRDL Sbjct: 61 LDIPKSRMGPKLVA-LYVIEKTDPSVFENQELQNLTGSIRREEGTGRPTKKDRRDLD 116 >UniRef50_C7I4L5 RNA-binding S4 domain protein n=1 Tax=Thiomonas intermedia K12 RepID=C7I4L5_THIIN Length = 142 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 68/131 (51%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 RLDKWLWAAR+ KTRALA E G+V NG +KP+K V + L ++Q + Sbjct: 12 SAAVASQRLDKWLWAARWCKTRALAASQCELGRVWVNGAPAKPAKEVRIGDVLVIQQERE 71 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 R V V + QR+ A A LY ET S +RE+ A R+L+ RP K +RR Sbjct: 72 RREVEVLQVGLQRQSAPLAQALYRETEASRLQRERQAELRRLSPEPEAVRQGRPSKLDRR 131 Query: 123 DLLRFKHGDSE 133 +L R + Sbjct: 132 ELQRMLDSHPD 142 >UniRef50_Q2P648 Heat shock protein 15 homolog n=13 Tax=Xanthomonadaceae RepID=Q2P648_XANOM Length = 135 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 70/131 (53%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ + A VRLD WLWAARF+KTR+LA+ +E GKV GQR KPS+ + L + +G Sbjct: 3 LELEQATTVRLDVWLWAARFFKTRSLAKNAVETGKVDVAGQRPKPSRTLRSGEQLRIDRG 62 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + + V A++ R A A LY E+ S E R + L R P+ +PDK+ Sbjct: 63 GEIFEITVAALSAVRGAAPVAQALYVESDSSREARAQWRLQRAAERTGYRAPEGKPDKRA 122 Query: 121 RRDLLRFKHGD 131 RR + D Sbjct: 123 RRLITALGDID 133 >UniRef50_B1Y782 RNA-binding S4 domain protein n=5 Tax=Burkholderiales RepID=B1Y782_LEPCP Length = 153 Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 3/131 (2%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG- 60 VRLDKWLWAARFYKTR+LA + I G+V N Q +K +++V L+++QG Sbjct: 14 APDSREGVRLDKWLWAARFYKTRSLAGDEIGHGRVMINQQLAKAARLVRCGDLLSVKQGN 73 Query: 61 -NDERTVIVKAITEQRRPASEAALLYEETAESVEKREK-MALARKLNALTMPHPDRRPDK 118 R + V A+++ R PA A LYEET ES +A RP K Sbjct: 74 CPLPRIIRVLALSDVRGPAPVARQLYEETEESRAAVATWLANRPLTVDPAQSITQGRPTK 133 Query: 119 KERRDLLRFKH 129 +RR + ++ Sbjct: 134 SDRRQITEWQR 144 >UniRef50_D0L0H9 RNA-binding S4 domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0H9_HALNC Length = 140 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 2/128 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS-KIVELNATLTLRQGN 61 + E R+D WLWAARF+KTR+LA IEGGKV NGQ K S K V + L++ +G Sbjct: 11 QTELKEQRVDTWLWAARFFKTRSLASTAIEGGKVAINGQPCKKSGKAVRIGDELSIERGE 70 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKER 121 + V V +++QR A+ A LY E+ E + +R K A + N L P +PD+ R Sbjct: 71 TKWIVTVTGLSKQRGSATVAQTLYSESPEHLAERLKKAEQNRQNHLMNPSRV-KPDQHTR 129 Query: 122 RDLLRFKH 129 L + Sbjct: 130 ILLRALRG 137 >UniRef50_B0MVH7 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVH7_9BACT Length = 132 Score = 123 bits (308), Expect = 2e-27, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 +RLDK+LWA R +KTR+ A E I +V N +KPS+ V + + +++ Sbjct: 1 MEAIRLDKYLWAVRIFKTRSDAAEAIRQNRVLVNDAYAKPSREVRIGDRIAVKRMPVTYL 60 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 V R+PA Y + +K+ + R+ + RP KKERR+L Sbjct: 61 FEVVGYVSSRQPAKNVPD-YCRNITPQSELDKLNIPRETVFVFRDRGTGRPTKKERRELD 119 Query: 126 RFK 128 Sbjct: 120 SLM 122 >UniRef50_A0QXX1 Heat shock protein 15 n=18 Tax=Actinomycetales RepID=A0QXX1_MYCS2 Length = 127 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 R+D+WLWA R KTR A GG V N + +KPS V + R G+ Sbjct: 4 MDCMESTRIDRWLWAVRLTKTRPDAAAACRGGHVRVNDRVAKPSTTVAPGDEVRARLGDR 63 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 R V V + ++R A++A Y + + ++ + + RP K++RR Sbjct: 64 TRIVEVVRVIQKRVGAADAVTCYLDRSPALPPAVTVPV------AVRDRGAGRPTKRDRR 117 Query: 123 DLLRFKHGD 131 L +++ G Sbjct: 118 LLDKWRSGQ 126 >UniRef50_A6UE60 RNA-binding S4 domain protein n=12 Tax=Rhizobiales RepID=A6UE60_SINMW Length = 137 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 5/132 (3%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQG 60 PA RLDKWL+ AR K+R+LA++ IE G V NG+R ++ S ++ L + Sbjct: 6 PSAPATRQRLDKWLFFARLIKSRSLAQKAIEAGHVVVNGKRETQSSAQIKAGDMLEVSLE 65 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 + + V +R P EA LLYE+ + T RP K+E Sbjct: 66 RRDLVLRVLLPGSRRGPYEEARLLYEDLTPAAPA----GKPTLYEQATRDRGAGRPTKRE 121 Query: 121 RRDLLRFKHGDS 132 RR+ R + G Sbjct: 122 RRETDRLRPGAD 133 >UniRef50_C5C3U9 RNA-binding S4 domain protein n=12 Tax=Actinomycetales RepID=C5C3U9_BEUC1 Length = 122 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A VR+D WLWA R K+R+ A G V NG+R+KP+ V + ++ +R G+ ER Sbjct: 2 AESVRVDAWLWAVRILKSRSAASTACRAGHVQINGERAKPASPVRVGDSVRVRGGHAERV 61 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLL 125 + V+ + +R A A Y + + RE ++ RP K+ERR L Sbjct: 62 LEVRRLIVKRVGAPVAVECYVDHSPPPPPREI-----RIQVAIRDPGTGRPTKRERRQLD 116 Query: 126 RFKH 129 R + Sbjct: 117 RLRG 120 >UniRef50_A3TX18 S4 domain protein n=4 Tax=Rhodobacteraceae RepID=A3TX18_9RHOB Length = 130 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 9/134 (6%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M E+P + RLDKW+W ARF K+R+LA ++ GG V NG R+ KPS V+ LT Q Sbjct: 1 MAEQPT-KFRLDKWIWQARFVKSRSLAAGLVTGGHVRVNGMRAAKPSHGVQPGDVLTFPQ 59 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKK 119 G+ R V + A +R PA+EA LYE+ + EK + + RP K+ Sbjct: 60 GDRIRVVRILAPAARRGPAAEAQALYEDMSPPEEKTQI-------PQGARNEGNSRPTKR 112 Query: 120 ERRDLLRFKHGDSE 133 +RR L ++ G + Sbjct: 113 DRRKLDLYRKGMGD 126 >UniRef50_Q1NY04 RNA-binding S4 n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NY04_9DELT Length = 132 Score = 121 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 54/128 (42%), Positives = 77/128 (60%), Gaps = 1/128 (0%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A ++RLD WLWAARF+KTR LA + + GGKVH NG R K +++V + L +R+G T Sbjct: 5 AEKIRLDIWLWAARFFKTRTLAGQAVSGGKVHLNGGRVKAARLVGSDDLLEIRKGVLAFT 64 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH-PDRRPDKKERRDL 124 V V+ + QR A AA LYEE+ ES+ R+ + R+ A P P +P K++RR + Sbjct: 65 VTVRGTSRQRLAAPLAAELYEESPESLAARQAASQERRTAAKAGPQAPRGKPAKRDRRLI 124 Query: 125 LRFKHGDS 132 +F D Sbjct: 125 KKFIRRDE 132 >UniRef50_Q2RYB5 RNA-binding S4 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RYB5_RHORT Length = 144 Score = 121 bits (303), Expect = 8e-27, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 6/126 (4%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLRQGNDERTV 66 R+DKWLW ARF KTR LA+ + G V G+ K + +V LTL G RTV Sbjct: 24 SQRIDKWLWYARFCKTRGLAQTLCAAGHVKREGESLVKAATLVRPGDRLTLVLGPLRRTV 83 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLR 126 +V+A +R PA EA LY+E E E++ L+ P RP KK+RR L R Sbjct: 84 VVRAAGARRGPAPEARTLYDE----PEPAERLGDPTMEG-LSRPSGGGRPTKKDRRALDR 138 Query: 127 FKHGDS 132 ++ D Sbjct: 139 WRAEDE 144 >UniRef50_B5JNJ8 S4 domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNJ8_9BACT Length = 157 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 1/129 (0%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ K +VR+D+WLWA R +KTR A E GGKV +G+ KPS++V + + + + Sbjct: 29 LESKDLDKVRIDRWLWAVRIFKTRGDAVEACRGGKVEIDGENVKPSRMVRIGEKVDVMKD 88 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKE 120 R V + +R A A ++ E+ E L RP K+E Sbjct: 89 GVLREFRVVGLLMKRVGAKVVAAYVQDLTPP-ERLEVRRETLAQTILKREAGAGRPTKRE 147 Query: 121 RRDLLRFKH 129 RRD+ R Sbjct: 148 RRDIERLFG 156 >UniRef50_Q169A4 Heat shock protein, putative n=22 Tax=Rhodobacterales RepID=Q169A4_ROSDO Length = 125 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 A ++R+DKWLW RF+KTR+LA ++ G V NG R+ K S +V LT QG+D R Sbjct: 2 ADKLRIDKWLWHGRFFKTRSLAATVVASGAVRVNGTRTQKRSHMVVSGDVLTFPQGDDIR 61 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDL 124 + V+A+ +R PA EA LY + + E+R + + + RP KK+RR L Sbjct: 62 VIRVEALGTRRGPAPEARALYTDLSPP-ERRTRDETPKNPSFE----GKGRPTKKDRRTL 116 Query: 125 L 125 Sbjct: 117 D 117 >UniRef50_Q47PE2 RNA-binding S4 n=1 Tax=Thermobifida fusca YX RepID=Q47PE2_THEFY Length = 147 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 6/120 (5%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D+WLWA R KTR+ A + G V N + +KP+ V++ + R R V V Sbjct: 31 RVDRWLWAVRLTKTRSDAAQACRAGHVRVNDKPAKPATSVKVGDRVRARVNGVTRIVEVT 90 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKH 129 I E+R A A Y + V + +AR P RP K+ERR L R + Sbjct: 91 HIIEKRVGAPIATRCYIDHTPVVPPELAVPVAR------RPRGAGRPTKRERRQLDRLRG 144 >UniRef50_Q28M35 RNA-binding S4 n=1 Tax=Jannaschia sp. CCS1 RepID=Q28M35_JANSC Length = 108 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 14/120 (11%) Query: 11 LDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIVK 69 +DKWLW ARF+KTR+LA + G V N + K S + LT QGN R V + Sbjct: 1 MDKWLWQARFFKTRSLAARQVSAGHVRVNATKITKASTQISPGDVLTFPQGNTIRVVKID 60 Query: 70 AITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRFKH 129 A+ ++R PA EA LY + P RP KK+RRDL F+ Sbjct: 61 ALAKRRGPAPEAQTLYIDMTPEAAP-------------QSPRVGPRPTKKDRRDLDAFRE 107 >UniRef50_A7HTT3 RNA-binding S4 domain protein n=10 Tax=Alphaproteobacteria RepID=A7HTT3_PARL1 Length = 131 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGND 62 R+D+WLW ARF K+R+LA +++ G++ +GQR K S++V LT G Sbjct: 5 AGQPGQRIDRWLWYARFLKSRSLAATLVQSGRLRLSGQRISKASRLVRAGDILTFPLGPH 64 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERR 122 R + + + +R PA EAALLYE R+ A + P RP KKE R Sbjct: 65 IRVIKILHLGTRRGPAPEAALLYE--DLDPPSPLPPKADRETAAESRPAGTGRPTKKEGR 122 Query: 123 DLLRFKHG 130 K G Sbjct: 123 RTATLKSG 130 >UniRef50_A4WST9 RNA-binding S4 domain protein n=5 Tax=Alphaproteobacteria RepID=A4WST9_RHOS5 Length = 100 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M +RLDKWL ARF+KTRALA ++E G+V NGQ KP++ V LT Q Sbjct: 1 MAAADRATIRLDKWLVQARFFKTRALASALVEAGRVRLNGQHVAKPAQPVGEGDMLTFPQ 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMA 99 G R + V A+ +R PASEA LY++ + Sbjct: 61 GGRIRLIRVVAVGVRRGPASEARGLYDDLDTPPAAASPLE 100 >UniRef50_B6IUH9 Heat shock protein, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IUH9_RHOCS Length = 115 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 + +RLDKWLW ARF KTR LA + G + G K V+ LT G Sbjct: 16 ADLAQGRLRLDKWLWYARFVKTRGLAARLCASGAIRIGGAHVTKAHHRVKPGDVLTFPLG 75 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEK 94 R + V+A+ +R PA EA LYE+ + + Sbjct: 76 PHIRVIRVRALAARRGPAPEARTLYEDLSPPTPE 109 >UniRef50_UPI000174635B protein containing RNA-binding S4 domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174635B Length = 125 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 2/123 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R D +L R +KTR+LA + G V GQ KP++ ++L L +++G+ V V Sbjct: 1 MRADLYLHHVRIFKTRSLATQACTRGLVQIGGQPMKPARELKLGEVLDIQRGDLSLVVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP-DRRPDKKERRDLLRF 127 A R AS L E+ V+ +K A AR+ L PH +PDKK+ R + Sbjct: 61 IAFPTTRVGASLVKLFMEDLT-PVQNYQKAAEARREKVLLTPHALAAKPDKKQLRLIREL 119 Query: 128 KHG 130 Sbjct: 120 MER 122 >UniRef50_D2LJI2 RNA-binding S4 domain protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJI2_RHOVA Length = 105 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 1/105 (0%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGN 61 + E RLDKWLW ARF K+R+LA ++IE G + N QR K + ++ LT Sbjct: 1 MTASDEQRLDKWLWHARFVKSRSLAAKLIEEGCIRVNRQRVVKAATCIKCGDVLTASLFG 60 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNA 106 D R + ++ I E+R P EAA LY E S + + +A Sbjct: 61 DVRVIEIRGIGERRGPPDEAAALYCERLGSPPSTSRNGEGGESDA 105 >UniRef50_A9E5L5 Heat shock protein 15 n=1 Tax=Kordia algicida OT-1 RepID=A9E5L5_9FLAO Length = 113 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 27 AREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYE 86 A + G V NG KPS+ V + +R+ R + V I R A +Y Sbjct: 2 ATTACKKGHVKINGATVKPSRDVYATDKIEVRKDQITRHLTVLDIPPSRVGAKLV-DIYR 60 Query: 87 ETAESVEKREKMALARKLNALTMPHPDRRPDKKERRDLLRF 127 E E + L + RP KK+RR++ + Sbjct: 61 VDTTPKENFEHLELLKFSKDHYRKKGMGRPTKKDRREIDEY 101 >UniRef50_Q2GC52 RNA-binding S4 n=3 Tax=Sphingomonadaceae RepID=Q2GC52_NOVAD Length = 96 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 +R+DK+LW RF TR LA+ +E G + NG+R + S V L L L + + Sbjct: 1 MRIDKFLWFTRFAGTRNLAQGWVEDGHIRLNGRRIERCSADVRLGDVLVLPMRSRVTVIE 60 Query: 68 VKAITEQRRPASEAALLYEETAES 91 V A+ +R PA EA Y Sbjct: 61 VLALPARRGPAPEAQACYRVLDGP 84 >UniRef50_A1B330 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=A1B330_PARDP Length = 89 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M ++ A +RLD+WL AR +KTR LA + I G + NGQ KP++ V T+T+ Sbjct: 1 MSQEAAGAIRLDRWLHHARLFKTRTLAADAIGAGGIRVNGQPCSKPAQAVRGGDTVTVSA 60 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEET 88 R + V+ + E+R PASEAA LYEE Sbjct: 61 HGRVRVLRVRLLGERRGPASEAATLYEEL 89 >UniRef50_B1LWX7 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=B1LWX7_METRJ Length = 102 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDER 64 RLDKWLW ARF +TR+LA + G V NG R++ P+K + + +T+ + Sbjct: 3 EDRQRLDKWLWFARFARTRSLAARLASDGFVRVNGSRAENPAKAIGVGDVVTVAAPHATL 62 Query: 65 TVIVKAITEQRRPASEAALLYEETAESVEKREKMAL 100 V V + +R PA EA LLY++ + E Sbjct: 63 AVRVLGLGLRRGPAPEARLLYDDLSGGALSVEAGPE 98 >UniRef50_Q11CX7 RNA-binding S4 n=1 Tax=Chelativorans sp. BNC1 RepID=Q11CX7_MESSB Length = 95 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 R+DKWL+ AR K+R+LA ++ + G+V N ++ + S++V LT+ Sbjct: 1 MATDERQRIDKWLFFARVVKSRSLAAKLAQAGRVRVNREKINEASQLVRPGDVLTITLDR 60 Query: 62 DERTVIVKAITEQRRPASEAALLYEETAESVEKRE 96 V A +R PA EA LLYE+ ++ +E Sbjct: 61 RILVYRVLAPGLRRGPAEEARLLYEDLTQTPAIKE 95 >UniRef50_Q0G1N8 RNA-binding S4 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G1N8_9RHIZ Length = 161 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 A R+DKWL AR KTR++A++++E KV N ++ P++ V + LT+ Sbjct: 15 AGPEASSQRIDKWLVFARVVKTRSIAQQLVEAKKVRLNKEKIDNPARNVRVGDVLTISYS 74 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHP 112 + V +R +A LYE+ V + ++ + R + P Sbjct: 75 SRVHVFQVLGFAGRRGSPGDAQALYEDLNAPVVEVDQGSSDRAEADEIVAAP 126 >UniRef50_B8ERF0 RNA-binding S4 domain protein n=9 Tax=Rhizobiales RepID=B8ERF0_METSB Length = 104 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 1/88 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 A RLDKWLW AR KTR LA ++ G V N +R P+K V LT+ R Sbjct: 2 AATQRLDKWLWFARVTKTRTLAARLVLDGHVRLNARRIDAPAKPVAAGDVLTVALERQVR 61 Query: 65 TVIVKAITEQRRPASEAALLYEETAESV 92 + V +R P EA LL+EE +ESV Sbjct: 62 VLRVLQPGARRGPFPEARLLFEELSESV 89 >UniRef50_Q1GPH7 RNA-binding S4 n=1 Tax=Sphingopyxis alaskensis RepID=Q1GPH7_SPHAL Length = 116 Score = 92.6 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDE 63 A +RLDK LW RF ++R++A+ M+ G + +G+R + S V+ ATL L G Sbjct: 6 AAGSIRLDKLLWFLRFARSRSIAQAMVAAGHIRLDGRRVSRSSCAVQAGATLVLPVGERI 65 Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH 111 + + ++ +R PA+EA Y + + L+A + Sbjct: 66 EVIRLVSLPLRRGPATEAQACYVRLSATTGSAAIGGDGNALHAEALDR 113 >UniRef50_Q0AMA8 RNA-binding S4 domain protein n=2 Tax=Alphaproteobacteria RepID=Q0AMA8_MARMM Length = 109 Score = 92.6 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-----GQRSKPSKIVELNATLTL 57 + +R+D WLW AR +KTR+LA +++ G++ + SKPS +V TLTL Sbjct: 2 SEAGTGIRIDVWLWQARQFKTRSLATAIVQKGRLRITSGGLTRKISKPSTLVRAGDTLTL 61 Query: 58 RQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLN 105 + + + A+ +R PASEA LY ++ A R Sbjct: 62 PRNGGIVRLEILALGTRRGPASEAQALYRLIDDAQAATRPTAQTRTPA 109 >UniRef50_Q2N6H3 S4 domain protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2N6H3_ERYLH Length = 103 Score = 91.5 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGNDERTVI 67 +R+D L RF+KTR+ AR +IE G + NG+R + S V LT+ G + Sbjct: 1 MRIDLVLCRLRFFKTRSAARNLIEAGHLRANGRRVVQVSHPVAEGDILTVPLGKSVVVIE 60 Query: 68 VKAITEQRRPASEAALLYEETAE 90 + + E+R PA+EA Y Sbjct: 61 ILHLPERRGPAAEARECYRALDP 83 >UniRef50_A3DIS8 RNA-binding S4 n=7 Tax=Clostridiales RepID=A3DIS8_CLOTH Length = 79 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R LA E E G+V NG+ +KP V++ + +R GN V V Sbjct: 1 MRIDKYLKVSRLIKRRTLANEACEQGRVLINGKVAKPGTEVKVGDIIEIRFGNSTTKVEV 60 Query: 69 KAITEQRRPASEAALLY 85 AI E A E+ +Y Sbjct: 61 TAINEHVLKA-ESKDMY 76 >UniRef50_A5G345 RNA-binding S4 domain protein n=2 Tax=Acetobacteraceae RepID=A5G345_ACICJ Length = 98 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGND 62 + A RLDK+L+ ARF KTR +A ++ G V N Q + KP + LTL Sbjct: 10 EDAAWQRLDKFLFHARFVKTRGVAARLVAAGGVRINRQITEKPHARLRPGDVLTLALPQG 69 Query: 63 ERTVIVKAITEQRRPASEAALLYEETAE 90 + V V A+ +R PA+EA LYE AE Sbjct: 70 VQVVRVVALGARRGPAAEARRLYEVVAE 97 >UniRef50_B4RFP2 Ribosome-associated heat shock protein n=6 Tax=Caulobacteraceae RepID=B4RFP2_PHEZH Length = 101 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-----QRSKPSKIVELNATLTL 57 R D WLW ARF+KTR+LA + ++ G+V + KP++ V++ L Sbjct: 1 MSDETACRADVWLWRARFFKTRSLAAKFVDEGRVRLTRLGHETRLDKPARPVKVGDQLVF 60 Query: 58 RQGNDERTVIVKAITEQRRPASEAALLYEETAESVE 93 G V V+A+ E+R P +EA LY A + Sbjct: 61 ALGGRLIAVTVEAMGERRGPPAEARTLYSTLAADPD 96 >UniRef50_A3UGK9 S4 domain protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UGK9_9RHOB Length = 94 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-----QRSKPSKIVELNATLTL 57 +R D WL+ AR YK+R LA +MIE G V + + +KP+ V L + Sbjct: 2 SAHGESMRCDVWLFRARLYKSRGLAGQMIEKGAVRIDRNGQVTRLTKPAAPVRPGDCLVI 61 Query: 58 RQGNDERTVIVKAITEQRRPASEAALLYEETAE 90 R+ D + V+A+ E+R PA EA Y E Sbjct: 62 RRDADPLRLTVRALPERRGPAPEAQSCYSLETE 94 >UniRef50_A3VNF6 S4 domain protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VNF6_9PROT Length = 110 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMI--EGGKVHYNGQR---SKPSKIVELNATL 55 + + +RLD+WLW AR +KTRALA ++ +G +V G+ +KPS + TL Sbjct: 3 LPDLTTPSLRLDRWLWHARIFKTRALAARIVSQKGARVTRAGKTQKTTKPSFAIRPGDTL 62 Query: 56 TLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVE 93 + Q + V A+ ++R PA EA LY + +S Sbjct: 63 AIVQAQRAIILEVVALGDRRGPAREAQTLYRISDDSPA 100 >UniRef50_A7H4E7 S4 domain protein n=30 Tax=Epsilonproteobacteria RepID=A7H4E7_CAMJD Length = 81 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L K RA++ +M + G V NG K SK V++ +TL + V Sbjct: 1 MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVGDIITLHFTEYTQKYKV 60 Query: 69 KAITEQRRPASEAALLY 85 A+ + A Y Sbjct: 61 LALPSTKSIPKNAQNEY 77 >UniRef50_P37557 Uncharacterized protein yabO n=25 Tax=Bacteria RepID=YABO_BACSU Length = 86 Score = 88.0 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ + G++ NG ++K S V+ LT+R G TV V Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRFGQKLVTVQV 60 Query: 69 KAITEQRRPASEAALLYEETAESV 92 + + EAA +Y E Sbjct: 61 NELKDTT-KKEEAANMYTILKEEK 83 >UniRef50_Q9KGI8 Uncharacterized protein BH0073 n=176 Tax=Firmicutes RepID=Y073_BACHD Length = 88 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ E G++ NG +K +V+ L +R G TV + Sbjct: 1 MRLDKFLKVSRLIKRRTLAKEVCEQGRITVNGNVAKAGTVVKEGDELVIRFGQKLVTVEI 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREK 97 + E EA+ LYE E + + Sbjct: 61 TNVKET-VRKEEASTLYEVKKEEPISKSE 88 >UniRef50_Q0BWQ4 S4 domain protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BWQ4_HYPNA Length = 95 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-----GQRSKPSKIVELNATLTL 57 +RLD WLW ARF+KTRALA + G V + + KP V + +T Sbjct: 1 MPEEGSLRLDIWLWRARFFKTRALATAHVRGRGVRLSHLGQTRKTDKPGASVNVGDVVTF 60 Query: 58 RQGNDERTVIVKAITEQRRPASEAALLYEETAESV 92 + +V V + E+R PA EA LY Sbjct: 61 GKAERIYSVEVLDLGERRGPAEEARALYRPLEAEP 95 >UniRef50_B0SXM9 RNA-binding S4 domain protein n=1 Tax=Caulobacter sp. K31 RepID=B0SXM9_CAUSK Length = 99 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-----QRSKPSKIVELNATLT 56 R D WLW ARF+KTR+LA +E G++ + KPS+ + L L Sbjct: 6 AGSDPGHCRADVWLWRARFFKTRSLAGRFVEEGRIRLTRAGAESRVDKPSRGLRLGDGLV 65 Query: 57 LRQGNDERTVIVKAITEQRRPASEAALLYEETA 89 G V V + E+R PA+EA LYE Sbjct: 66 FAIGGRIVAVRVVGLGERRGPATEARELYEAVE 98 >UniRef50_P64406 Uncharacterized protein spr0007 n=42 Tax=Bacteria RepID=Y007_STRR6 Length = 88 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + G++ NG +K S +++N + +R GN V V Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEK 94 + + +AA +YE +E+ + Sbjct: 61 LEMKDST-KKEDAAGMYEIISETRVE 85 >UniRef50_A8RA49 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RA49_9FIRM Length = 94 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L AR K R++++E+ + +V+ NG+ +KP+ V++ + + G E TV V Sbjct: 1 MRLDKYLKTARILKRRSVSKELADNERVYVNGRVAKPATDVKIGDIVKVIFGYRELTVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALA 101 A+ +Q ++AAL++E E + K++ + Sbjct: 61 LALPKQ-VNKNDAALMFEVVEEKLIKKDSLVDR 92 >UniRef50_Q03N19 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=84 Tax=Firmicutes RepID=Q03N19_STRTD Length = 91 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + G++ NG +K S +++ + +R GN TV V Sbjct: 1 MRLDKYLKVSRIIKRRPVAKEVADKGRIKVNGVLAKSSTDLKIGDQVEVRFGNKLLTVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMA 99 + + +AA +YE +E+ + ++ Sbjct: 61 LEMKDST-KKEDAAKMYEIISETRIEVDEQE 90 >UniRef50_Q3SVL4 RNA-binding S4 n=16 Tax=Rhizobiales RepID=Q3SVL4_NITWN Length = 97 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGN 61 RLDKWLW AR + R A ++E G+V NG R + P + + LT+R Sbjct: 1 MDVLERQRLDKWLWHARVVRARTQAASLVEAGRVRVNGLRQTSPGHPLRIADVLTIRLDR 60 Query: 62 DERTVIVKAITEQRRPASEAALLYEETA 89 R + + E+R + A LY++ + Sbjct: 61 GIRILRITGFAERRGGPTVARALYDDLS 88 >UniRef50_C5EYQ4 Putative uncharacterized protein n=3 Tax=Helicobacter RepID=C5EYQ4_9HELI Length = 83 Score = 84.5 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L A K R +A++MIE G V +G K S+ V++ + + R V Sbjct: 1 MRIDKFLNAVNITKRRTIAQDMIENGVVKISGISVKASRDVKVGDVIEIAFLEKPRFFEV 60 Query: 69 KAITEQR-RPASEAALLYEET 88 I Q+ +E+ L Y+E Sbjct: 61 LQIPTQKTIKKNESHLYYKEI 81 >UniRef50_Q046E2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) n=37 Tax=Firmicutes RepID=Q046E2_LACGA Length = 91 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 K + ++R+DK+L +R K R +A+EM + G+V N + K S V++ + + G Sbjct: 5 KGREENKMRIDKFLKVSRLVKRRTVAKEMADQGRVKVNERVVKSSYDVKVGDVIEIGFGT 64 Query: 62 DERTVIVKAITEQRRPASEAALLYEETA 89 + V + E + A EA+ LYE Sbjct: 65 KQLKARVLDLRETTKKA-EASDLYELID 91 >UniRef50_C5RJP4 RNA-binding S4 domain protein n=2 Tax=Clostridium RepID=C5RJP4_CLOCL Length = 92 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E E G+V NG+ +KPS V+ + + + N + Sbjct: 1 MRLDKYLKVSRIIKRRTVAKEACESGRVIINGKVAKPSSEVKEDDVIEILYANRSLKAKI 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREKMALA 101 I A +YE A + E Sbjct: 61 VNIANH-VTKDNAKGMYEIIAGEEDTEEGNGEE 92 >UniRef50_B7AVE5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AVE5_9BACE Length = 90 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 ++ V +RLDK+L +R K R +A + + G+V N + K S V+ + ++ GN Sbjct: 2 DRNGVSMRLDKYLKVSRLIKRRTVANDACDAGRVIVNDKVVKASYDVKEGDVIEIQFGNK 61 Query: 63 ERTVIVKAITEQRRPAS 79 V V I + + Sbjct: 62 SVKVRVTDIRDTTKKKK 78 >UniRef50_C6XPI0 RNA-binding S4 domain protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XPI0_HIRBI Length = 106 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 5/100 (5%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHY--NG---QRSKPSKIVELNATLT 56 +R+D +L RF+KTRALA I V NG + +KP+ + + ++ Sbjct: 7 SPDETDRMRVDLFLHRIRFFKTRALATSQITKKNVRISRNGETRRTNKPAANIFVGDIVS 66 Query: 57 LRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKRE 96 + T+ V + +R PA EA Y + +++R+ Sbjct: 67 FYCNKEIVTLSVLNLPLRRGPAPEAQKCYTLIEDQLKERD 106 >UniRef50_B0VF38 RNA-binding S4 n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VF38_9BACT Length = 86 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D L KTR++A+ + V NG+ +K S V+ + R N E + + Sbjct: 1 MRIDVLLHKLCLTKTRSIAKNACDKNLVLINGKPAKASADVKAGDIIIFRLYNAEHEIRI 60 Query: 69 KAITEQRRPASEAALLYEET 88 I E +A YE Sbjct: 61 TQIPEGNVAKKDATRYYELL 80 >UniRef50_B8FZC2 RNA-binding S4 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FZC2_DESHD Length = 90 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R +A+++ EG K+ NG+ +KPS V+ +TL V V Sbjct: 1 MRIDKYLKVSRLIKRRTVAKDICEGEKIRLNGRIAKPSAEVKPGDIVTLEMARHLLEVRV 60 Query: 69 KAITEQRRPASEAALLYEETAESV 92 + A+EA LLYE + Sbjct: 61 LSTPNS-AKANEAHLLYEVLKDEK 83 >UniRef50_A5P9N3 S4 domain protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P9N3_9SPHN Length = 85 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVI 67 +R+D+ L RF +TR+ AR++++ G + NG+R +PS+ + + LTL G + + Sbjct: 1 MRIDRLLCTLRFVRTRSAARKLVDQGHIRRNGERVLRPSRDIAVGDVLTLPVGRHVKLIE 60 Query: 68 VKAITEQRRPASEAALLYEETAE 90 V + E+R P EA Y E Sbjct: 61 VLQLPERRGPPREAQECYRELDP 83 >UniRef50_D1AVF5 RNA-binding S4 domain protein n=3 Tax=Fusobacteriaceae RepID=D1AVF5_STRM9 Length = 83 Score = 81.5 bits (200), Expect = 9e-15, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L R K R +A E+ + G V NG K V+ + +R N V V Sbjct: 1 MRLDKFLKITRVVKRRTIANELCDSGNVSVNGDIKKALYSVKDGDRIDIRFYNRNFVVNV 60 Query: 69 KAITEQRRPASEAALLYEETA 89 + + + + Sbjct: 61 LKLPPESLKKEDIEKYIKIEE 81 >UniRef50_B4WYP3 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WYP3_9GAMM Length = 431 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Query: 31 IEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAE 90 +EGGK+H +G R+KPSK V+ T+T+ +G + VIV+ ++ +R PA A LYEET E Sbjct: 1 MEGGKIHIDGSRTKPSKAVQPGQTVTITKGTEHFEVIVRDLSSKRGPAKVAQTLYEETPE 60 Query: 91 SVEK---REKMALARKLNALTMPHP 112 SV K AL+ A+ P Sbjct: 61 SVAKWDSYSGRALSGTPAAIGNPQG 85 >UniRef50_C8WQS2 RNA-binding S4 domain protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQS2_ALIAD Length = 100 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+++ + G+V NG+ K + V + + ++ GN TV+V Sbjct: 1 MRLDKFLKVSRLIKRRTLAKKICDAGRVLVNGRPGKAATDVAVGDEIVIQYGNKTVTVVV 60 Query: 69 KAITEQRRPASEAALLYE 86 + + E R EAA LY+ Sbjct: 61 RRLAENPR-RDEAASLYD 77 >UniRef50_Q6AE36 Ribosome-associated heat shock protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AE36_LEIXX Length = 118 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 VR+D W WA R +KTR+ A + + G + NG R+KP++ V++ + G E Sbjct: 7 AGPASVRVDSWTWAVRLFKTRSSASDACKAGHLKVNGDRAKPAQPVKVGDEIRALAGGSE 66 Query: 64 RTVIVKAITEQRR 76 + I + + +R Sbjct: 67 KVYIARRLIVKRV 79 >UniRef50_D2MMW4 S4 domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MMW4_9FIRM Length = 93 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R +++E+ ++ N + KPS V++ L ++ G+ V + Sbjct: 1 MRVDKFLKISRILKRRTISKELALHQRIKINDRIVKPSHEVKIGDILEVQYGSRILGVRI 60 Query: 69 KAITEQRRPASEAALLYEETAESV 92 +I E+ A +YE E Sbjct: 61 LSIQEK-VKKETAMEMYEVVFEKR 83 >UniRef50_Q9ZJJ0 Uncharacterized protein jhp_1318 n=14 Tax=Helicobacter RepID=YE23_HELPJ Length = 84 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L + K R LA +M G V NG +KPSK V+ ++L + Sbjct: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKPSKEVKTGDVISLHYLKGIEEYTI 60 Query: 69 KAITE-QRRPASEAALLY 85 I + P + L Sbjct: 61 LQIPTLKNVPRKDTHLYI 78 >UniRef50_Q9ZIM1 Uncharacterized protein Lmo0216 n=117 Tax=Bacteria RepID=Y216_LISMO Length = 88 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ E G++ NG +KP V+ L +R G T + Sbjct: 1 MRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTNVKSGDELVIRFGPKIVTAKI 60 Query: 69 KAITEQRRPASEAALLYEETAESV 92 + + E +A +Y E Sbjct: 61 ERLEEN-AKKEQATEMYTIIKEER 83 >UniRef50_C8P218 S4 domain protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P218_ERYRH Length = 90 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+E+ + +V NG+++KPS V L + +R + + V Sbjct: 1 MRLDKYLKVSRIIKRRTVAKELADDDRVFINGKKAKPSSEVSLEDEIEIRFEHRHIKIEV 60 Query: 69 KAITEQ--RRPASEAALLYEETAESVEKREKMA 99 ++++ R +YE ++ R + Sbjct: 61 TFLSDKILRSNPP----MYELISDQRIDRNVLE 89 >UniRef50_A3WG15 Putative heat shock protein 15 (HSP15) n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WG15_9SPHN Length = 92 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDE 63 +RLD+ L RF +TR++A+ MI G++ N R K S V + LTL + Sbjct: 7 EEGTMRLDRLLVFLRFARTRSIAKAMILSGRMRLNSTRITKISCEVGVGDVLTLAYRGEI 66 Query: 64 RTVIVKAITEQRRPASEA 81 ++ + ++R SEA Sbjct: 67 CVARIEKLPDRRLSPSEA 84 >UniRef50_B1ZVL5 Heat shock protein 15 n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVL5_OPITP Length = 94 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 36 VHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKR 95 + GQR+KP++ V + +RQG RT+ V + R A+ A + + + Sbjct: 1 MEIGGQRAKPAREVHAGELVCVRQGLITRTLRVVDVPRSRVGAALVARFCADLTPA-AEF 59 Query: 96 EKMALARKLNALTMPHPDRRPDKKERRDLLRFKHG 130 EK R + L RP K++RR L + Sbjct: 60 EKAREQRLQHMLAREKGLGRPTKRDRRALDQLLGR 94 >UniRef50_A9NE18 S4 RNA-binding domain protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE18_ACHLI Length = 82 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 39/63 (61%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L +R K R++A+++ + +++ NGQ +KP K V++ + L G T+ + Sbjct: 1 MRIDKFLKVSRLIKRRSVAKDVADADRIYVNGQLAKPGKTVKVGDQVQLHLGLKIITIEI 60 Query: 69 KAI 71 ++ Sbjct: 61 TSL 63 >UniRef50_C9MA32 S4 domain protein n=2 Tax=Synergistaceae RepID=C9MA32_9BACT Length = 102 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L + K R++A EMI+ G V NG+ KP+ V +++ V Sbjct: 1 MRLDKYLKLSCLVKRRSVAAEMIDAGAVRLNGRPVKPASDVSDGDIVSVAFPFRLVEARV 60 Query: 69 KAITEQ--RRPASEAALLYEETAES 91 + E+ RR A ++ E + Sbjct: 61 ISSDERALRRGEPAAEIVAERRLDP 85 >UniRef50_A6QAM8 RNA-binding S4 protein n=6 Tax=Epsilonproteobacteria RepID=A6QAM8_SULNB Length = 81 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DKWL A K R +A +M++ G V+ N ++K SK +++ +T+ ++ V Sbjct: 1 MRVDKWLSAVNVVKRRTIATDMLKSGVVYVNSMKAKASKDLKVGDKVTIEYLKGPKSYEV 60 Query: 69 KAIT-EQRRPASEAALLYEET 88 I + P S+ +E Sbjct: 61 LQIPTTKTIPKSQKEEFVKEL 81 >UniRef50_C1SMC4 Ribosome-associated heat shock protein implicated in recycling of 50S subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMC4_9BACT Length = 87 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK L K R +A EM + G V NG+ +KPS V+ + L N + + + Sbjct: 1 MRIDKLLKVLMLIKRRTVANEMADEGFVLLNGRSAKPSTKVKAGDLIELDMWNYYKKLEI 60 Query: 69 KAITEQ 74 I + Sbjct: 61 VEIPLK 66 >UniRef50_A7HLN2 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HLN2_FERNB Length = 79 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L R K R +A+E+ + G V +G+ KPS V+ L + G V V Sbjct: 1 MRLDKFLKQNRIIKRRTVAQEVSKAGLVKKDGRPLKPSYEVKPGDILEISYGTKIIIVKV 60 Query: 69 KA 70 Sbjct: 61 TD 62 >UniRef50_B5Y800 Heat shock protein 15 n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y800_COPPD Length = 82 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L + K R LA+ +I+ G V NG+ +K S V+++ + + +V Sbjct: 1 MRLDKFLKESGIIKRRTLAQRIIQAGYVKINGKLAKQSDPVKVDDMIEVDTPVAYTRYVV 60 Query: 69 KAITEQRRPASEAALLYEETAE 90 I +R +E ++T + Sbjct: 61 --INVERPSKAELQERIKKTDD 80 >UniRef50_B9DKZ3 Putative uncharacterized protein n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DKZ3_STACT Length = 88 Score = 71.5 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 33/61 (54%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R LA+E+ + G+V NG +K V++ + + + TV Sbjct: 1 MRLDKYLKVSRLIKRRTLAKEVSDQGRVQVNGNTAKAGTDVKVGEKIVITLPSRIVTVRT 60 Query: 69 K 69 + Sbjct: 61 R 61 >UniRef50_B5EL81 RNA-binding S4 domain protein n=3 Tax=Acidithiobacillus RepID=B5EL81_ACIF5 Length = 87 Score = 71.5 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 39/74 (52%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 A +R+D +L +R K R+LA+E+ + G V NG+ +K +V+++ LT+ + Sbjct: 2 AGHLRIDLFLKMSRLIKRRSLAKEICDAGCVQINGRVAKAGALVQVDDVLTMDIRDRLLR 61 Query: 66 VIVKAITEQRRPAS 79 V V I ++ Sbjct: 62 VRVLRIPQRIEGPE 75 >UniRef50_C9RA17 RNA-binding S4 domain protein n=1 Tax=Ammonifex degensii KC4 RepID=C9RA17_AMMDK Length = 81 Score = 71.5 bits (174), Expect = 8e-12, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 39/81 (48%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L AR R +A + + G V NG+ +KP+ V+ +TL G + V Sbjct: 1 MRIDKFLKEARLITRRTVANQALREGLVTINGRTAKPATRVKKGDIITLNLGGKLLRLEV 60 Query: 69 KAITEQRRPASEAALLYEETA 89 A+ RR E A LY Sbjct: 61 LAVEVPRRRRGEEAALYRLLD 81 >UniRef50_D1B612 RNA-binding S4 domain protein n=2 Tax=Synergistaceae RepID=D1B612_THEAS Length = 89 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L AR K R +A+EM E G V +G+ +KPS V L + + V V Sbjct: 1 MRVDKFLKLARIVKRRTVAQEMAEAGAVRVSGRVAKPSTEVRAGDQLEVDFPSRFLRVKV 60 Query: 69 KAITEQRRPASEAALLYEETAESVEKREK 97 E AA +E + RE+ Sbjct: 61 LTADEGEIKRKAAA--FEVLEDRKVSREE 87 >UniRef50_UPI0001BC589E heat shock protein 15 n=3 Tax=Fusobacterium RepID=UPI0001BC589E Length = 101 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+ +++ K +G+ +K V++ L L N + Sbjct: 1 MRLDKFLKVSRIIKRRTIAKMVVDEKKAKLDGKIAKAGTEVKVGQELELEYFNKYFKFKI 60 Query: 69 KAITEQRRPASEAALLYEETA 89 + + + L E Sbjct: 61 LRVPLGNVQKEKTSELVELIE 81 >UniRef50_A0NWS1 RNA-binding S4 n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NWS1_9RHOB Length = 92 Score = 70.7 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 40 GQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMA 99 + SK V LT+ + + A+ +R P EA LYE+ + Sbjct: 4 DKIDSASKTVRTGDVLTIGLERRILVLKILALGSRRGPYEEARKLYEDLS---PPPPPKD 60 Query: 100 LARKLNALTMPHPDRRPDKKERRDLLRFKHGD 131 RP K+ERR + F+ GD Sbjct: 61 APPPAAPAQRDAGAGRPTKRERRKIDAFRSGD 92 >UniRef50_B9TH32 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TH32_RICCO Length = 83 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%) Query: 49 VELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALT 108 ++ ++++ + + V V A++ RR A EAALLY ET ES R++ Sbjct: 1 MKPGMRVSIKNKDMQIEVEVLALSNVRRGAPEAALLYRETDESQRLRQQAQETGADQYAE 60 Query: 109 MPHPDRRPDKKERRDLLRFKHGD 131 RP K++ R++ RF Sbjct: 61 RDRGLGRPTKRQMREIQRFTGRG 83 >UniRef50_A8F4I8 RNA-binding S4 domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4I8_THELT Length = 77 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 33/62 (53%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+DK+L + K R +A++M++ K+ NG+ K S ++ N +T+ V V Sbjct: 1 MRIDKYLKTTKLIKRRTIAQQMLKHEKIFVNGRAVKASYEIKTNDIVTIIHPLRRIVVRV 60 Query: 69 KA 70 + Sbjct: 61 VS 62 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 68.4 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + VR+DK+L Y++R ++ + G +H NG+ K + V N +TL Sbjct: 59 DANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPVKSNYKVRPNDLVTLMLDRP 118 Query: 63 ERTVIVKAITEQRRPASEAAL--LYEE 87 + E A+ +YE+ Sbjct: 119 RHETSI--------KPEEIAINVVYED 137 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 68.4 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 30/63 (47%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + E+ VRLDK+L A +R+ A+++I+ V + K S V+ + + Sbjct: 7 IVEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPVKNSYKVKAGDEIEVTLP 66 Query: 61 NDE 63 +E Sbjct: 67 EEE 69 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLD+WL + R ++RA ++ I+ G V NG++ K + + L E Sbjct: 39 PMRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQGKAKTPLREGDQVQLWMPPPE 94 >UniRef50_D2C7K9 RNA-binding S4 domain protein n=5 Tax=Thermotogaceae RepID=D2C7K9_THENR Length = 77 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLD +L + K R +A+++++G +V NG+ +K S V+ + + + T+ V Sbjct: 1 MRLDLFLKIS-VVKRRTIAQKLLKGQRVLVNGRPAKASYEVKDGDIVEVFLPTKKITLRV 59 Query: 69 KA------ITEQRRPAS 79 ++E+R Sbjct: 60 VGNGGYEVLSEERVSKP 76 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLD+WL + R ++RA ++ IE G V NG + + + L E Sbjct: 21 PMRLDRWLVSQRPEQSRARIQKFIEAGYVRVNGTTGRAKTPLRHGDEIKLWMPPPE 76 >UniRef50_C5CFR5 RNA-binding S4 domain protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFR5_KOSOT Length = 74 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D +L R K R LA++ +E G V NG +KP ++ L + N ++ V Sbjct: 1 MRVDLFLKKNRIIKRRTLAKQAVEKGYVLKNGHTTKPGVALKPGDELKVIFSNRVISLKV 60 Query: 69 KA 70 Sbjct: 61 TE 62 >UniRef50_A5TSN2 Ribosome-associated heat shock protein n=10 Tax=Fusobacterium RepID=A5TSN2_FUSNP Length = 99 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +RLDK+L +R K R +A+ +++GGKV +G+ K + V++ L + N + Sbjct: 1 MRLDKFLKVSRIIKRRPIAKLVVDGGKVKLDGKVVKAAVEVKVGQILEIEYYNKYFKFEI 60 Query: 69 KAITEQRRPASEAALLYEETAES 91 + + + L + Sbjct: 61 LQVPLGNVSKDKTSDLVKLIETK 83 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 + ++RLD++L A +R+ + +I+ G V NG +KP V ++T+R Sbjct: 6 DDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPAKPKNPVSRGDSITVRIPEP 65 Query: 63 E 63 E Sbjct: 66 E 66 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 14/93 (15%) Query: 1 MKEKPAVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 + K +R+DK+L F + TR ++ + G + N K + V+ + + Sbjct: 58 IASKGQEPLRIDKYL--MNFIENATRNKIQQAAKEGHIWVNDLVVKQNYKVKAGDQIKVM 115 Query: 59 QGNDERTVIVKAITEQRRPASEAAL--LYEETA 89 + ++ + L +YE++ Sbjct: 116 FTHPPYEFLLT--------PEDIPLDVVYEDSD 140 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + + +R+DK+L TR+ ++ E G + NG+ K + ++ +TL Sbjct: 36 VADPGQTLIRIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPVKSNYRIKPGDVVTLELL 95 Query: 61 NDERTVIVK 69 R + + Sbjct: 96 RPRRELEII 104 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 62.2 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 + RLDK++ +R+ + +I+ G V NG+ +KPS ++ T+T+ + Sbjct: 10 AESDGERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTAKPSLKLKNGDTITIEISPET 69 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 1 MKEKPAVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 M E R+DK+L RFY +R + I+ G + NG K S VE + R Sbjct: 1 MPETETGGPRIDKYL--TRFYPEASRTKIQRAIKKGHLKVNGTDVKKSYGVEPGDEIVFR 58 Query: 59 Q 59 Sbjct: 59 L 59 >UniRef50_Q466Z9 FtsJ-like methyltransferase n=6 Tax=Euryarchaeota RepID=Q466Z9_METBF Length = 236 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 +RLD ++ +K+R A++ I G V NG K S+ V + + + +G Sbjct: 1 MRLDAYIVDMGHFKSRGRAKKAILAGNVKVNGAVITKASRDVSTDDIIEVTEG 53 >UniRef50_B9JSK8 Hemolysin A n=20 Tax=Alphaproteobacteria RepID=B9JSK8_AGRVS Length = 263 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 + RLD+ L A + +R+ AR+ ++ G V NG+ KPS + T+ + Sbjct: 6 SPQSLEPQRLDQLLVALNLFASRSRARDAVQRGGVKVNGRTVTKPSLTFSPDVTIEIDDP 65 Query: 61 NDERTVI 67 + Sbjct: 66 AQDYVSR 72 >UniRef50_UPI0001694F8C YabO n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001694F8C Length = 69 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 25 ALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALL 84 +A+++ E G+V NG+ +KPS V+ L ++ G + TV V+ + + R AA + Sbjct: 1 TVAKDVSEQGRVWINGREAKPSSTVKAGDELAIQFGQKKVTVRVEMLADTTR-KETAAEM 59 Query: 85 YEETAES 91 Y E Sbjct: 60 YTVIKEE 66 >UniRef50_C8S933 RNA-binding S4 domain protein n=2 Tax=Archaeoglobaceae RepID=C8S933_FERPL Length = 208 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTV 66 +RLD++L + ++K+R+ A+E I+ G V NG+ KPS V+ + + + + R Sbjct: 1 MRLDEFLKKSGYFKSRSQAKEAIKRGFVKVNGKVITKPSFQVKGSEKIEVAEKGKPRGY 59 >UniRef50_Q03W41 Cell division protein, S4-like domain n=3 Tax=Leuconostoc RepID=Q03W41_LEUMM Length = 265 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDERT 65 +RLD + +A F +R+ A+++IE +V N + +KP + + +++R+ + Sbjct: 186 SSLRLDTVI-SAGFDLSRSGAKKLIEENQVRVNWSEIAKPDVELAIGDVISVRKHGRVQI 244 Query: 66 VIVKAITEQ 74 ++ I+++ Sbjct: 245 KLLDGISKK 253 >UniRef50_A8RBL3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBL3_9FIRM Length = 260 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 +R+D++L ++ TR A++ I+ G V +G+ K S ++E +T+ Q Sbjct: 1 MRIDQYLVEKGYFTTRTRAQDAIKKGCVSVDGKTIMKNSFVIEEGKEVTVFQ 52 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 59.1 bits (142), Expect = 5e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D +L TR L + I+ V NG K ++ + +N +++R Sbjct: 29 RIDHYLCRLYPNYTRVLFQTAIKQEAVLVNGLPVKAARRMRVNDRVSVRLP--------- 79 Query: 70 AITEQRRPASEAA--LLYEE 87 + + R P + ++YE+ Sbjct: 80 ELPDNRLPPEDIPIDIVYED 99 >UniRef50_B7GTM9 Hemolysin A n=18 Tax=Bifidobacteriaceae RepID=B7GTM9_BIFLI Length = 276 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELN-ATLTLRQGND 62 RLD L A+ ++RA A+ +I+ G V +G+ KPS +V+ + L + +G+D Sbjct: 33 RLDMMLVASGLVESRAKAQRLIKAGHVRVDGETITKPSFMVKAGHSELAVDKGDD 87 >UniRef50_C5CGS7 Hemolysin A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGS7_KOSOT Length = 268 Score = 58.0 bits (139), Expect = 9e-08, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 ++RLD+ L A F+ +R+ A ++I+ GKV NG+ KP K V L+ + + Sbjct: 4 KLRLDELLVARNFFSSRSRASDIIKQGKVSINGKIVKKPGKKVPLDIKIEI 54 >UniRef50_A4VTL3 Uncharacterized conserved protein, contains S4-like domain n=6 Tax=Streptococcus suis RepID=A4VTL3_STRSY Length = 263 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 +RLDK L + F +RA A ++IE G V + + + SK+VE+ +++R+ R Sbjct: 184 SSMRLDK-LISVAFNLSRATANKLIEAGHVKLDYVLTEQTSKLVEIGQLISVRRYGRVRL 242 Query: 66 VIVKAITEQ 74 ++Q Sbjct: 243 NEFLGFSKQ 251 >UniRef50_B0MQ24 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ24_9FIRM Length = 241 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 RLD +L K+R+LA +I+ G V NG+ K S V+ N + + Sbjct: 4 RLDVYLSENNTVKSRSLAASLIKQGSVEVNGRICTKASFAVDENDNIRI 52 >UniRef50_Q0FF40 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FF40_9RHOB Length = 65 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 64 RTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPDKKERRD 123 R + V + +R PASEA LY + +E REK+ K RP K RR Sbjct: 2 RKIEVVKMGVRRGPASEAQELYLDHSEPRPIREKIPENPKYE------GKGRPTGKWRRA 55 Query: 124 LLRFKHGDSE 133 L F + + Sbjct: 56 LHSFSNSGLD 65 >UniRef50_A8LQY6 RNA-binding S4 n=1 Tax=Dinoroseobacter shibae DFL 12 RepID=A8LQY6_DINSH Length = 82 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 43 SKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALAR 102 +KP+ V LT QG R + V+A +R PA EA LY + + E + + Sbjct: 2 TKPAASVGAGDVLTFAQGRQIRVIRVEAAGMRRGPAPEAQALYTDLTPVPDPCEPPPVRK 61 Query: 103 KLNALTMPHPDRRPDKKERRDLLRFKH 129 RP KK RRD + Sbjct: 62 GP----------RPTKKHRRDYEESRR 78 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 4/88 (4%) Query: 3 EKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 E+ + RLD ++ + +R L + I G++ NG + KP V+ + + Sbjct: 9 EREDEQKRLDIYIAQKMPIEISRNLIQNAITKGQITVNGSQKKPHYKVKQGDEIQIDFHE 68 Query: 62 DERTVIVKAITEQRRPASEAALLYEETA 89 + I + P + LYE+ Sbjct: 69 LVEETKEENILPENIPLNI---LYEDEE 93 >UniRef50_A0B9H7 RNA-binding S4 domain protein n=1 Tax=Methanosaeta thermophila PT RepID=A0B9H7_METTP Length = 238 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT-- 65 +RLD +L +R+ A +I+ GKV NG K S V+ + + +G + Sbjct: 3 MRLDIYLVE--IAGSRSKAVHLIKSGKVMVNGAVCRKQSYRVKPGDRVEIVEGFRYVSRG 60 Query: 66 -VIVKAITEQR 75 ++A+ + R Sbjct: 61 GYKIEALFQGR 71 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 3 EKPAVEVRLDKWLWAAR-FYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ-G 60 +RLDK+L +R+ +++IE GKV NG K S V + + Sbjct: 10 NSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLHRKASYKVRGGEIIAVLLPP 69 Query: 61 NDERTVIVKAIT 72 E +V + I Sbjct: 70 PRELSVKPEEIP 81 >UniRef50_UPI0001C41E03 rRNA methylase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41E03 Length = 264 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 RLDK+L +R ++EMI+ V N + K S V + + Sbjct: 4 RLDKYLVNNNLIASRTKSKEMIKSKNVKVNDKIITKASYTVRDGDKVEI 52 >UniRef50_A6Q7G3 Hemolysin A n=2 Tax=Epsilonproteobacteria RepID=A6Q7G3_SULNB Length = 237 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 33/49 (67%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 +RLDK+L ++++R A E I+ G+V +G+++KPS ++ N+ + + Sbjct: 1 MRLDKYLVEEGYFESRNRALEAIKAGQVTVDGKKAKPSVKIDTNSYVEV 49 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 21/94 (22%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 K +R+D++L TR + IE G+V NG+ K + V+ + L Sbjct: 6 SKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPVKSNYRVKSCDHIHLTFL-- 63 Query: 63 ERTVIVKAITEQRRPASEAA-------LLYEETA 89 R PA E A +LYE+ Sbjct: 64 ------------RPPAPELAPEDIPITILYEDDD 85 >UniRef50_C0ABD6 Hemolysin A n=2 Tax=Verrucomicrobia RepID=C0ABD6_9BACT Length = 253 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 PA ++RLD+ L A F +TR+ AR ++ G+V +R KP K + LT+ Q Sbjct: 1 MPPAAKLRLDELLVARGFVETRSQARAIVMSGRVRLGTERLDKPGKTYPADLPLTIDQPP 60 Query: 62 D 62 Sbjct: 61 R 61 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 55.3 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 9/89 (10%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL-RQG 60 + R+D+WL A +R+ +E I+ +V NG K S + + + Sbjct: 5 ADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAVKTSYTLRAADAVEVEPAD 64 Query: 61 NDERTVIVKAITEQRRPASEAALLYEETA 89 + I + +LYE+ Sbjct: 65 PPPLNATAEDIPLR--------ILYEDAD 85 >UniRef50_A8AW22 S4 domain n=3 Tax=Streptococcus RepID=A8AW22_STRGC Length = 275 Score = 55.3 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 A +RLDK L A+ F +R A ++I G V N PS +VELN +++R+ + Sbjct: 194 ASSMRLDK-LIASSFKLSRNDASQLIFGKHVKVNYSIIDNPSYLVELNDLISVRRFGRFK 252 Query: 65 TVIVKAITEQ 74 V ++ Sbjct: 253 IVKENGFSKN 262 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 RLD +L A +R+ +++I G+V NG K S + + + Sbjct: 22 RLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPVKASYEIRSGDCIAVWLPE 73 >UniRef50_Q7VIT5 Putative uncharacterized protein n=2 Tax=Helicobacter RepID=Q7VIT5_HELHP Length = 241 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 RLD +L +R A+E IE G V NG+ K S ++ + + + Sbjct: 2 QRLDIYLKT--LLSSRTKAQEAIESGCVRVNGKVVYKSSLPLKSSDEVDID 50 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 54.9 bits (131), Expect = 8e-07, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVK 69 R+D WL +R+ + I+ G V +G K + + + + V + Sbjct: 48 RVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPLKANYRLRPGDVIEVA-PPAPEAVEIL 106 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 54.5 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 R+DK+L +R+ +++I+ KV NG+ K S V + L Sbjct: 11 SSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESVKRSFKVNRGDHIRLIIPPP 70 Query: 63 E 63 E Sbjct: 71 E 71 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 R+D +L + + +TR+ +E+I+ + NG+++K S V + + Sbjct: 12 RIDIYL-SKKLDETRSRIQELIKSNNILVNGKKTKASYKVNFGDEIFIDIP 61 >UniRef50_A3VSN6 Hemolysin HlyA n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSN6_9PROT Length = 243 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 +RLD +L A ++R A+++I G V NG + K + ++ + R Sbjct: 1 MRLDSYLVEAGHVRSRERAKKVIGDGYVWVNGVQVRKAGRSLQPTDRVEFR 51 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDER 64 R+DK+L + + +R+ +++IE + N + K S V+L + + Sbjct: 11 EGESERIDKYL-SKKVPLSRSQIQDLIEKELIKVNEKPIKNSYKVKLGDRIEVIIPPPVE 69 Query: 65 T 65 T Sbjct: 70 T 70 >UniRef50_B1CBW0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CBW0_9FIRM Length = 247 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Query: 8 EVRLDKWLWAARFYK-TRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGND 62 +RLD +K +R A ++GGKV N Q SKP+ V++ +++R Sbjct: 170 SMRLDA--VIGNIFKLSRNEANMFVKGGKVKINHNQVSKPAMTVKVGDMISVRTKGR 224 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 10 RLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDK L A+R +R+ +++++ G + NG+ KP++ V L + E Sbjct: 23 RLDK-LIASRVTGMSRSFVQQLMKRGAILVNGEPCKPAQRVRYGDRLEVYLPPVE 76 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATL 55 + + +RLD L + Y +R+ A + IE GKV NG IV T+ Sbjct: 8 IVTQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNGLARSKRSIVAPGDTI 62 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIV 68 +R+D +L K R +++IE G V+ N K + IV++N + + ++ +I Sbjct: 37 IRIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKKNYIVKINDVIEIFLPEGKKNIIP 96 Query: 69 KAI 71 + + Sbjct: 97 ENL 99 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 15/82 (18%) Query: 10 RLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVI 67 R+D +L +R Y +R + IE GKV NG K S+ + +N + + Sbjct: 27 RIDHYL--SRLYPNFSRVAFQRTIEEGKVLVNGLPVKISRRLRVNDVIEFSLPAE----- 79 Query: 68 VKAITEQRRPASEAAL--LYEE 87 +QR + L LY++ Sbjct: 80 ----PDQRVQPEDIPLDILYDD 97 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 53.3 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 K R+DK+L + R TR +++I+ + N +++KP+ +E N T+ + E Sbjct: 30 KEEAGSRIDKFL-SERLELTRTRIQQLIKDENILVNEKKTKPAYKIEENDTIKVVIPELE 88 Query: 64 RT 65 Sbjct: 89 TV 90 >UniRef50_Q02WY5 Cell division protein, S4-like domain n=4 Tax=Lactococcus lactis RepID=Q02WY5_LACLS Length = 263 Score = 52.6 bits (125), Expect = 3e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 7 VEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 +R+DK + A +K +R +A M+E KV N Q K V +++R + Sbjct: 181 DGLRIDKMIAIA--FKISRNIATNMLESKKVKINYQEIDKKDFSVGAGDLISVRGFGRIK 238 Query: 65 TVIVKAITEQ 74 + + +T++ Sbjct: 239 ILSLLGLTKK 248 >UniRef50_B9LA28 Hemolysin A n=7 Tax=Epsilonproteobacteria RepID=B9LA28_NAUPA Length = 236 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 +RLD++L + +R A+E+I+ G V N + KPS + ++ + Q + Sbjct: 1 MRLDQYLVTNEYTFSRNKAQEIIKSGYVKVNDKIIKKPSFKIAETDSVEVLQND 54 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 1 MKEKPAVEVRLDKWLW-AARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 + + +RLD+++ +R++ + IE G V NG+ KPS V N L + Sbjct: 34 LVMVKSEGMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVLKPSYKVRKNDRLHVT 93 Query: 59 QGNDERTVIV 68 + V Sbjct: 94 MPEPTHEIPV 103 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 RLD +L + +R L + +I+ GKV NG+ KP+ + + + + E Sbjct: 11 GTSARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGKERKPAWPLAEGDNVEIEWPSVENK 70 Query: 66 VIVKAIT 72 +K + Sbjct: 71 TGLKDLI 77 >UniRef50_B2KAR0 Hemolysin A n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAR0_ELUMP Length = 258 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 M + RLD L A F+K+R A+ I G+V NG + ++ +TL+ Sbjct: 1 MMTSNPKKPRLDMELIAQGFFKSRTRAQASIMAGEVLVNGTVEYGADRKIKPEDIITLK 59 >UniRef50_B9EB58 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EB58_MACCJ Length = 257 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGND 62 +RLD A K+RA+A++ IE G + N K S ++ TL+++ Sbjct: 174 ATVSSLRLDVV-VAEMMRKSRAIAQKHIEAGHIKVNHVIIDKVSFVIASGDTLSIKGYGR 232 Query: 63 ERTVIVKAITEQ 74 + + +T++ Sbjct: 233 AQLTEIGDLTKK 244 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ- 59 M+ + A RLD R K+R+ + +IE G V NG K + V + + Sbjct: 35 MEFRLAEGTRLDVG-VTERVGKSRSFIQGLIEEGHVLVNGAARKANYKVRAMDQIAVVIP 93 Query: 60 GNDERTVIVKAITEQRRPASEAALLYEETA 89 E V + I + +LYE+ Sbjct: 94 PPRELKVEAENIPLE--------ILYEDED 115 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 8/92 (8%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERT 65 RLD ++ A R TR +++I+ G ++ N ++SKPS VE N + + +++ Sbjct: 10 EEGKRLDLYI-AERTELTRTRIQQLIKDGNINVNNKKSKPSYKVEKNDFIEMIIPDEK-- 66 Query: 66 VIVKAITEQRRPASEAALLYEETAESVEKREK 97 + + E +LYE++ +V +E Sbjct: 67 -EIDLVPEN----INIKILYEDSDIAVIDKEA 93 >UniRef50_C2LQX1 RNA binding protein n=1 Tax=Streptococcus salivarius SK126 RepID=C2LQX1_STRSL Length = 267 Score = 51.8 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 +RLD L +R+ A ++I GKV N ++ K ++ V + +++R R Sbjct: 184 SSMRLDNVLATV-LNLSRSNALKLIASGKVKLNYRQIEKANQTVMIGDMISVRGYGRFRL 242 Query: 66 VIVKAITEQRRPASEA 81 ++ A Sbjct: 243 AQRDGFSKS-GKAKIV 257 >UniRef50_B7CAM4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM4_9FIRM Length = 243 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 ++RLDK L + +RA A++MI+ GK+ NG+ K S +V + + DE Sbjct: 1 MDKIRLDKAL--LKTISSRAKAQDMIKEGKISVNGKVITKASYLVSDEDDIVVTHTQDEF 58 Query: 65 TVI 67 Sbjct: 59 VSR 61 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 10 RLDKWL------WAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDK++ W +R + I+ G+V NG KPS V+ +TL Sbjct: 13 RLDKFVMEKTPEWI-----SRTFIQRAIKNGEVLVNGTSKKPSYKVKSGDIITLNAPEAP 67 Query: 64 RTVIVK 69 + Sbjct: 68 EIPEIL 73 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 51.4 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 8/106 (7%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPS-KIVEL-NATLTLR---QGND 62 ++R+DK+L + + TR+ A+EM+ G+V NG K + V+ + + G Sbjct: 2 KIRIDKFL-STQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRVYGYQ 60 Query: 63 ERTVIVKAITEQRRPASE--AALLYEETAESVEKREKMALARKLNA 106 E ++ + A++ + +R + A +L+ Sbjct: 61 EHLYLMLNKPQGVVSATDDKVHRTVLDLVPPELRRRGLFPAGRLDR 106 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 11/88 (12%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 R+DK+L +R+ + +I+ GKV G+ K S V +++ + Sbjct: 29 SEDSGERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPVKSSFKVTEGINISISIPPVK 88 Query: 64 RTVIVKAITEQRRPASEAAL--LYEETA 89 I+ L LYE+ Sbjct: 89 EAEII---------PENIPLDILYEDED 107 >UniRef50_D1B2S0 Hemolysin A n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B2S0_SULD5 Length = 238 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 +RLD +++ F ++R A E+I+ G V NG K S V N + + + Sbjct: 1 MRLDNYVFEKGFAQSRNKASELIKEGSVWVNGNVERKSSFEVCENDKVDVEK 52 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 16/111 (14%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTV 66 VRLDKWL +R+ +++IE G+V NG + + I++ L + + Sbjct: 31 GVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDKNLILKTGDRLVVNIP----EL 86 Query: 67 IVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPHPDRRPD 117 I + Q P LYE+ E++ + K L + PD Sbjct: 87 IPLDVVAQNIPLDI---LYED--------EQLIIINKPAGLVVHPGPGHPD 126 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 50.7 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 26/50 (52%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLT 56 +R+D+++ A +R++ + I+ G + NG KP+ ++ + + Sbjct: 17 DGMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVVKPNLRLKEDDVVE 66 >UniRef50_UPI0001793647 PREDICTED: similar to RluA-2 CG6187-PA, partial n=1 Tax=Acyrthosiphon pisum RepID=UPI0001793647 Length = 259 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 ++ + + VR+DK L +R ++ I+ G V NG+ K + +LN + + Sbjct: 67 IETENEIGVRIDKLLPDLNPDWSRNQIQDWIKLGLVEVNGKVIKANYKTKLNDVI-VATE 125 Query: 61 NDERTVIVKA 70 V + A Sbjct: 126 KVIEEVDIVA 135 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQG 60 KE +RLDK+L A TR +++I+ G+V N + + P V+L+ + L Sbjct: 8 KESEIKSIRLDKFLSNAHI-GTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGN 66 Query: 61 NDERTVIV 68 E V Sbjct: 67 RIEPHKNV 74 >UniRef50_B5ZBT3 Ribosomal RNA large subunit methyltransferase J n=15 Tax=Ureaplasma RepID=B5ZBT3_UREU1 Length = 247 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-QRSKPSKIVELNATLTLRQGN 61 RLD +L +TR+ A ++I+ G V N Q KPS +V+ N + ++ Sbjct: 2 SQRLDHYLKNTNQCETRSKAIDLIKRGFVFVNNLQILKPSFLVQENDFVDIKNNE 56 >UniRef50_A5VJ39 RNA-binding S4 domain protein n=13 Tax=Lactobacillus RepID=A5VJ39_LACRD Length = 261 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGND 62 +RLD + AA F +R A+++IE G+V N + +P + ++ +++R G Sbjct: 179 TTVSSLRLDVVI-AAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHGGR 237 Query: 63 ERT 65 R Sbjct: 238 LRI 240 >UniRef50_D1YBL0 S4 domain protein n=3 Tax=Propionibacterium acnes RepID=D1YBL0_PROAC Length = 76 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQR-SKPSKIVELNATLTLRQGN 61 +RL ++L A +T ARE+I G V NG+ ++ + + + + G Sbjct: 1 MHDDQMIRLGQYLKFANLAETGGQARELIASGMVSVNGEVETRRGRQLHPGDEVRVTNGG 60 Query: 62 DERTVIV 68 T V Sbjct: 61 QTVTATV 67 >UniRef50_Q06803 Hemolysin A n=3 Tax=Brachyspira RepID=HLYA_TREHY Length = 240 Score = 49.9 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 +RLD+++ + + ++R+ A+++I G V NG + + ++ + + Q Sbjct: 1 MRLDEYVHSEGYTESRSKAQDIILAGCVFVNGVKVTSKAHKIKDTDNIEVVQN 53 >UniRef50_Q2JUA0 Hemolysin A n=8 Tax=Cyanobacteria RepID=Q2JUA0_SYNJA Length = 275 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 24/50 (48%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATL 55 A VRLD WL ++ +R A+ I G+V NG R++ + + Sbjct: 2 ADRVRLDTWLVERGYFSSRQQAQRAILAGEVFLNGVRAEKAGTWVSGDPV 51 >UniRef50_C7H0C7 Hemolysin A n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0C7_9FIRM Length = 272 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERT 65 +R+DK L +Y++R A++ I G+V G+ K + V A + +R Sbjct: 1 MRIDKLLVEEGYYESREKAQQAISAGEVEVEGKICLKSASQVSSKARINIRNDRLPYV 58 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 49.5 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 E+ + RLD +L +RA +++I V NG+ ++ S V + L+ + Sbjct: 10 EEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRPARASHRVRGGDCVELKVPDP 69 Query: 63 ER 64 E Sbjct: 70 ET 71 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 49.5 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLDK + TR+ A ++E V NG+ +K S ++ N + ++ E Sbjct: 1 MSGLRLDKAMALIPEIGTRSRASHLLESNSVLLNGKPAKASVAIKENDLIEIQLPEPE 58 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSK-IVELNATLTLRQGNDER 64 RLD +L + +R+ +++IE G V N Q K V++ + + + + Sbjct: 30 QNTQRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRICVEIPSLQP 89 Query: 65 TVIVKAITEQRRPASEAAL--LYEE 87 +V A + L LYE+ Sbjct: 90 LKLV---------AEDIPLDILYED 105 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 + ++ +RLD +L +R+ A+ +I V N K S + + + Sbjct: 17 IPKEKDEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWVKASYSITSGDVVKVD 74 >UniRef50_C7N702 Hemolysin A n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N702_SLAHD Length = 267 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 +RLD L +RA A+ I G V NG+ K S V+ + + Sbjct: 1 MRLDVALVERGLEPSRAKAKASIAAGLVFVNGRNVTKASLGVDDGDAIEV 50 >UniRef50_B9L6T8 30S ribosomal protein S4 n=447 Tax=cellular organisms RepID=RS4_NAUPA Length = 208 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGND--ERTV 66 RLD ++ F TR AR+++ G + NG++ PS +V+ + +R+ + + Sbjct: 99 RLDNVVYRMGFASTRRFARQLVTHGHILVNGKKVNIPSYLVKEGDRIEIREKSKNNVQIQ 158 Query: 67 IVKAITEQRRPAS 79 +++Q A Sbjct: 159 RALELSQQTGIAP 171 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 M ++ RLD++L + +R+ +++I+ G V +G+ KPS V +TL Sbjct: 11 MVDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKVRKGQEITLVI 70 Query: 60 GNDER 64 E Sbjct: 71 PPPET 75 >UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=prokaryotic environmental samples RepID=B3T0Q8_9ZZZZ Length = 320 Score = 48.7 bits (115), Expect = 6e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 1 MKEKPAVEVRLDKWLWAA--RFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR 58 + + +RLD +L K+R MI G+V N +R+KP V +N T+ + Sbjct: 11 IVSRDDDGMRLDNYLIKIIKGMPKSR--IYRMIRKGEVRINSKRAKPRSRVHVNDTVRIP 68 >UniRef50_Q03QI1 Cell division protein, S4-like domain n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03QI1_LACBA Length = 259 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 2 KEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQG 60 + +RLD + F+ +R A+E+IE G V N + KP +++ +++R Sbjct: 175 EGATLSSLRLDN-IVGTGFHLSRHRAKELIEAGHVRLNWAETQKPDYELDVADIVSVRGF 233 Query: 61 NDERTVIV 68 R V Sbjct: 234 GRIRLDEV 241 >UniRef50_A8IBR4 Hemolysin A n=63 Tax=Alphaproteobacteria RepID=A8IBR4_AZOC5 Length = 274 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 A R+DK L + +RA A+ + G+V NG + KP + V+ +A + R Sbjct: 33 AARARIDKLLVERGLFDSRARAQAAVLAGQVSVNGAVAKKPGQEVDEDAQIEAR 86 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 5 PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDE 63 E RLDK+L A +R+ +++++ G V+ NG+ KPS+ + + L E Sbjct: 12 EGEEERLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVILHVPEPE 71 >UniRef50_A6WWC5 Hemolysin A n=9 Tax=Bacteria RepID=A6WWC5_OCHA4 Length = 253 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 1 MKEKPAVE-VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 M + + + +RLD+ L + TR+ AR+ I+ G V +G+ KP + V A + + Sbjct: 1 MSGETSDKNLRLDQLLVELGLFATRSRARDAIQRGTVKVDGKPVTKPGQTVLRTAKIAVD 60 Query: 59 QG 60 Sbjct: 61 DP 62 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 6 AVEVRLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 RLDK+L + + +R +IE ++ N K S +++ + + E Sbjct: 19 QEMQRLDKFLAELKIQELYSRTFIEHLIEEDRILVNLTPVKKSYLLKEGDEVIINLPEPE 78 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL-RQ 59 +K + RLDK L +R + ++ G + NG+ K + + +T+ ++ Sbjct: 8 LKLELEKTQRLDKVL-TGELGLSRTTIQSWLKAGLISVNGEVVKSNYKAQSGDEVTILQK 66 Query: 60 GNDERTVIVKAIT 72 D T+ + I Sbjct: 67 EEDVITIQPENIP 79 >UniRef50_Q7UXM6 30S ribosomal protein S4 n=6 Tax=Planctomycetaceae RepID=RS4_RHOBA Length = 202 Score = 48.3 bits (114), Expect = 8e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLR 58 RLD + F KTR AR+ I G NG + KP ++ + +R Sbjct: 94 RLDNVVRRVGFTKTRPQARQGITHGHFRVNGVKVTKPGYMLRAGDLIEVR 143 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 48.0 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 R+D++L A +RA + +IE G V Y+G+ + S+ V A + L Sbjct: 27 RIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGRSPRASQPVRPGAVIQLTIPPPI 80 >UniRef50_Q8EWQ3 Hemolysin n=1 Tax=Mycoplasma penetrans RepID=Q8EWQ3_MYCPE Length = 246 Score = 48.0 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 ++RLD +L + ++R +A+++I KV NGQ K + +V + + Sbjct: 1 MQKIRLDIYLVNENYARSRGVAQDLITNSKVVINGQIISKSNTLVNELDKVEI 53 >UniRef50_Q3AAH6 S4 domain protein n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AAH6_CARHZ Length = 246 Score = 48.0 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYN-GQRSKPSKIVELNATLTLRQGNDERTV 66 +RLD A+ F +R+ + IEG KV N + KPS V ++LR + Sbjct: 169 SLRLDSV-GASGFGISRSQMVKEIEGQKVRVNWKLQVKPSYEVAPGDVISLRGRGRVEVL 227 Query: 67 IVKAITEQ 74 + +++ Sbjct: 228 EIAGVSKS 235 >UniRef50_UPI000050FCA1 hypothetical protein BlinB_07935 n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FCA1 Length = 267 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 RLD+ L TR+ A I G+V NG KPS++V + L++ + + Sbjct: 3 RLDRELVERELIATRSRAAREIAAGRVSVNGHTVSKPSQVVSDSDELSVTEPDPWV 58 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 6 AVEVRLDKWLWAARF-YKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG-NDE 63 R+D+++ ++RF +R +++++ G + NG K S ++ ++ +E Sbjct: 23 GESKRIDRFI-SSRFPDLSRTYIQKLVKEGAIVVNGNVVKSSYFIKKGDVISATVPVPEE 81 Query: 64 RTVIVKAITEQ 74 + + I Sbjct: 82 TKITPEDIPLN 92 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQG 60 + E R+D++L +R+ + ++ G V NG+ S ++ + L Sbjct: 7 IVEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAKSLKLKAGDIILLEIP 66 Query: 61 N 61 + Sbjct: 67 D 67 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 10 RLDKWLWAARFYK--TRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQ 59 RLD +L ARF +R + I G+V NG KP+ V+ +TLR Sbjct: 21 RLDAYL--ARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLRI 71 >UniRef50_Q3APJ9 30S ribosomal protein S4 n=12 Tax=Bacteroidetes/Chlorobi group RepID=RS4_CHLCH Length = 203 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDERTVIV 68 RLD ++ A F +RA AR+++ G V NG++ PS +V + RQ + + + Sbjct: 94 RLDNIVFRAGFSPSRAGARQLVSHGHVTVNGKKVDIPSYLVSPADVMEFRQKSKNMSAVT 153 Query: 69 KAI---TEQRRPA 78 ++ E R PA Sbjct: 154 DSLNKTPESRIPA 166 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 29/52 (55%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 RLD++L +R+ +++I+ G+V +G +KP ++ TLT+ + Sbjct: 17 RLDRFLVEQLPELSRSQLKKLIDDGRVLLDGAAAKPGSKLKGGETLTVDVPD 68 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 1 MKEKPAVEVRLDKWLWAA-RFYKTRALAREMIEGGKVHYNGQ-RSKPSKIVELNATLTLR 58 + + A RLD WL A+ +R + +IE G V NG ++P + ++ L + Sbjct: 16 IAGEDAEG-RLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIKPGDQLVIA 74 Query: 59 QGNDE 63 E Sbjct: 75 MPEPE 79 >UniRef50_Q1JCF2 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Streptococcus RepID=Q1JCF2_STRPB Length = 64 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQ 59 RLDK L +R A + I+ G V NGQ+ K V+ + Sbjct: 7 TSGQRLDKALADLSPL-SRGQANDQIKQGLVLVNGQQKKAKYTVQAGDVICFEL 59 >UniRef50_D1CG17 Hemolysin A n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG17_THET1 Length = 277 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 +RLDK + +R A+ +I G V NG++++ S +R+G Sbjct: 5 SNQDSIRLDKLMVELGLASSREKAQALISSGLVTVNGEKARSSDQ-------RVRRGTKV 57 Query: 64 RTVIVKAITEQRRPASEAALL 84 R A L Sbjct: 58 IVKESLPY-VSRGGYKLAYAL 77 >UniRef50_UPI00016B2072 Hemolysin A n=3 Tax=candidate division TM7 RepID=UPI00016B2072 Length = 199 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 8 EVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGN 61 + RLD+++ R +R+ A I G+V NG+ K IV + L Sbjct: 2 KQRLDRYIVENRLTNSRSQAENYIRLGRVTVNGEVIKKCGFIVSTVDKVVLNIPE 56 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 3 EKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGND 62 +K RLD +L A +R+ + +I+ KV N + K + + ++L D Sbjct: 7 DKENFGQRLDVYL-AKLVDLSRSQIKNLIDNEKVLVNKKNVKAGYKLSEDDVISLEYPKD 65 >UniRef50_C1C8Q1 YlmH protein n=28 Tax=Streptococcus RepID=C1C8Q1_STRP7 Length = 261 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%) Query: 3 EKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 + RLD L + K +R A ++IE V N K V++ +++R+ Sbjct: 177 DLSVSSFRLDVLL--SNVLKLSRNQANQLIEKKLVQVNYHVVDKSDYTVQVGDLISVRKF 234 Query: 61 NDERTVI 67 R + Sbjct: 235 GRLRLLQ 241 >UniRef50_C7NC29 Pseudouridine synthase n=2 Tax=Leptotrichia RepID=C7NC29_LEPBD Length = 314 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 20/123 (16%) Query: 3 EKPAVEVRLDKWLWA-------ARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATL 55 + +RLD++L +R + I G V NG++SK + + LN T+ Sbjct: 9 DSEMEGMRLDRYLRKNFKDEPLSRIFG-------AIRAGDVKVNGKKSKENYRLALNDTI 61 Query: 56 TLRQGNDERTVIVKAITEQRRPASEAA----LLYEETAESVEKREKMALARKLNALTMPH 111 ++ E K+ + + Y++ + + E + K + M Sbjct: 62 VIKNLFSENFDNKKSFEKNNLKKIQIQKSDLEKYKKMI--IFENEDFFIVNKSEKIPMHK 119 Query: 112 PDR 114 Sbjct: 120 GTG 122 >UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN52_9PROT Length = 324 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 13/95 (13%) Query: 3 EKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 RLD+W+ RF T+ ++ + G+V NG R K VE + + Sbjct: 14 TSAEAGQRLDRWMKR-RFPGVTQGQVQKWLRKGQVRLNGGRVKADHRVESGEVVRVP--- 69 Query: 62 DERTVIVKAITEQR--RPASEAALL-----YEETA 89 A R +EA ++ YE+ Sbjct: 70 -PIDPEAAAPPPSRPVVGPAEAEMMRGLVIYEDDD 103 >UniRef50_C1TMR7 Hemolysin A n=2 Tax=Synergistaceae RepID=C1TMR7_9BACT Length = 270 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDER 64 RLDK + +TR+ A+ +I G+V NG+ + K V + + L+ Sbjct: 7 RLDKRMVELGLSETRSRAQAVIMSGEVLLNGEVADKAGTPVASDDLVELKAKGRTE 62 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 47.2 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 13/113 (11%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKP-SKIVELNATLTLRQGNDERTVI 67 +RLDK+L TR+ A+ M+ G+V NG K ++ T+ + Sbjct: 1 MRLDKYLAETAQC-TRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDGALLTYQKF 59 Query: 68 VKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALTMPH--PDRRPDK 118 V + + + S +KR+ + +A P R DK Sbjct: 60 VYLMLNKPEG---------VVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDK 103 >UniRef50_C1PB06 RNA-binding S4 domain protein n=1 Tax=Bacillus coagulans 36D1 RepID=C1PB06_BACCO Length = 168 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%) Query: 6 AVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 VR+DK L +R +I+ GK+ N K V+ T+ + Sbjct: 115 DEPVRIDKLLGNQLIDISRNQICSLIKEGKILLNKNTIKNHTAVKEKDTIEI 166 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLRQGNDER 64 +RLDK+L ++R++ + I G V NG+ K PS V+ + + + Sbjct: 1 MRLDKYLSDMG-VESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKDEPIH 56 >UniRef50_Q3ECD0 RNA pseudourine synthase 2, chloroplastic n=4 Tax=Magnoliophyta RepID=PUS2_ARATH Length = 430 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Query: 1 MKEKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRS-KPSKIVELNATL 55 + + ++RLD W+ ++R +RA + I G V NG+ K S V+ + Sbjct: 74 IVDAAKGKIRLDSWI-SSRINGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKSGDEV 129 >UniRef50_C3L733 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Bacillus anthracis str. CDC 684 RepID=C3L733_BACAC Length = 88 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 4 KPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDE 63 + R+DK++ +R ++ I+ V NG+ K + V N +T+ E Sbjct: 11 EEQKNERIDKFVAGINNEWSRTQVQQWIKDDVVTVNGKAVKGNYKVRENDEITVTIPEPE 70 Query: 64 R 64 Sbjct: 71 E 71 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%) Query: 1 MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 ++ R+DK L +R ++ I+ V N Q K + ++N + + Sbjct: 8 IENPEDTGQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVIKSNYKTKMNDHIVV 64 >UniRef50_Q8DVD5 Putative uncharacterized protein ylmH n=2 Tax=Streptococcus mutans RepID=Q8DVD5_STRMU Length = 263 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 7 VEVRLDKWLWAARFYKTRALAREMIEGGKVHYNG-QRSKPSKIVELNATLTLRQGNDERT 65 +RLDK + AA +R A ++IE KV N + K S+++++ +++R Sbjct: 183 SSMRLDK-IIAAVLKLSRRKANQLIESEKVKLNYLVQPKVSQLIDIGDLISVRGYGRFTI 241 Query: 66 VIVKAITE 73 +++ Sbjct: 242 SRDNGLSK 249 >UniRef50_A7HKW0 Hemolysin A n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HKW0_FERNB Length = 263 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTL 57 +RLD+ L F ++R A++MIE G V +G+ KPSK ++ + + Sbjct: 6 LRLDQLLILKGFVESRTKAQQMIENGLVLLDGKVCTKPSKKCHSDSKIII 55 >UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepID=B0TWR8_FRAP2 Length = 309 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 4 KPAVEVRLDKWL--WAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGN 61 +E R+D +L +R K +L I G++ N +R K + V + + + Sbjct: 11 DDVIEQRIDNFLISKFSRLPK--SLIYRWIRKGELRVNKKRVKQTTRVSAGDIVRVPPFS 68 Query: 62 DERTVIVKAITEQRRPASEAALLYE 86 E + + +++ E +LYE Sbjct: 69 LEENLEIAKVSKSHLDFLEQRILYE 93 >UniRef50_B0VI05 30S ribosomal subunit protein S4 n=6 Tax=Bacteria RepID=B0VI05_9BACT Length = 205 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 10 RLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK-PSKIVELNATLTLR 58 RLD ++ F TR AR+ I G NG++ PS +V+ + +R Sbjct: 96 RLDNVVYRMGFAVTRMQARQFINHGHFLVNGRKVDIPSYLVKAGDIIEVR 145 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 3 EKPAVEVRLDKWLWAARFYK-TRALAREMIEGGKVHYNGQRSKPSKIVELNATLTL 57 + R+DK L A F + +RA ++ ++ G + N K V++ + L Sbjct: 110 TQEQAGQRIDK-LAADMFTEHSRAQLQDWLKSGNLTVNDHNEKAKYRVKIGDIVRL 164 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.305 0.152 0.446 Lambda K H 0.267 0.0469 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 931,428,068 Number of Sequences: 3077464 Number of extensions: 37426852 Number of successful extensions: 164953 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 547 Number of HSP's successfully gapped in prelim test: 560 Number of HSP's that attempted gapping in prelim test: 163913 Number of HSP's gapped (non-prelim): 1141 length of query: 133 length of database: 1,040,396,356 effective HSP length: 98 effective length of query: 35 effective length of database: 738,804,884 effective search space: 25858170940 effective search space used: 25858170940 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 87 (37.9 bits)