Phyre 2 alignment of P37677 with c3c6aA_

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Job Description | P37677
Confidence | 23.28% | Date | Thu Jan 5 11:56:51 GMT 2012
Rank | 221 | Aligned Residues | 30
% Identity | 27% | Template | c3c6aA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:terminase large subunit; | PDBTitle: crystal structure of the rb49 gp17 nuclease domain
Resolution | 1.16 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2 | . | . | . | . | . | . | . | 10 | . | . |  |  |  |  | . | . | . | . | . | . | . | 20 | . | . | . | . |  |  |  | . | . | . | . | . | 30 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Query Sequence |  | T | Q | Y | W | L | G | L | D | C | G | G | . | . | . | . | S | W | L | K | A | G | L | Y | D | R | E | G | . | . | . | R | E | A | G | V | Q | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | K | Y | V | A | T | L | D | C | S | E | G | R | G | Q | D | Y | H | A | L | Q | I | I | D | I | T | E | F | P | Y | K | Q | V | A | V | Y | H
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 391 | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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