222 d2hoxa1 Probab=99.72   E-value=1.7e-16  Score=115.57  Aligned_columns=304  Identities=12%

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHC-------CCCCEEEECCCHHHHHHHHHHHHHHCCCC------CEEEEECCCCCHHHHH
Q ss_conf             2713689979999999998765-------88675997189799999999999836899------7899974984402577
Q batch____        82 GLSFGAPTEMEVKMAQLVTELV-------PTMDMVRMVNSGTEATMSAIRLARGFTGR------DKIIKFEGCYHGHADC  148 (426)
Q Consensus        82 ~~~~~~~~~~~~~lae~L~~~~-------~~~~~v~~~~sGseA~~~Al~~a~~~~gr------~~ii~~~~~yHg~~~~  148 (426)
                      +.......+...+|.+.++++.       -....+.|+++.+++...++.....-...      ..+++..+.| .....
T Consensus        92 y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y-~~~~~  170 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFY-PVFRE  170 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCC-HHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHH-HHHHH
T ss_conf             54566434452899999999988508867887769994688999999999864888612356774357300237-78999


Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             77742884323467654687436678617668999999999984048873899982653789986689899999999999
Q batch____       149 LLVKAGSGALTLGQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCD  228 (426)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~  228 (426)
                      .....+.+......                    |.+.++..+.   +++.++++...+|..|.+..           |+
T Consensus       171 ~~~~~~~~~~~~~~--------------------d~~~~~~~~~---~~~~~~~i~~P~NPtG~v~~-----------a~  216 (425)
T d2hoxa1         171 QTKYFDKKGYVWAG--------------------NAANYVNVSN---PEQYIEMVTSPNNPEGLLRH-----------AV  216 (425)
T ss_dssp             HHHHSCCTTEEEEE--------------------EGGGGTTCSC---GGGEEEEEESSCTTTCCCCC-----------CS
T ss_pred             HHHHCCCCCCCCCC--------------------CHHHHHHHCC---CCCEEEEECCCCCCCCEEEE-----------EE
T ss_conf             99855997444247--------------------9889997248---88579998178888560654-----------23


Q ss_pred             HCCCEEEECCCCCCCCCCCCHHHHHCCCCCCEEEECCHHC-CCCCCCE-ECCCHHHHHHHCCCCCEEECCCCCCCHHHHH
Q ss_conf             8299899437622420144238887089852787220211-5674310-0229999853025485344056667878899
Q batch____       229 EFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIG-GGMPVGA-FGGRRDVMDALAPTGPVYQAGTLSGNPIAMA  306 (426)
Q Consensus       229 ~~g~~li~DEv~~g~r~g~~~~~~~~~~~~di~~~~K~l~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~p~~~~  306 (426)
                      +||+++|.||+|....+.+..  ...+.+..+.++||.++ .|+++|+ ++.++.+.+.+..   .....+.+.+...+.
T Consensus       217 ~~~~~~i~De~y~~~~~~~~~--~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~---~~~~~~~~~s~~~Q~  291 (425)
T d2hoxa1         217 IKGCKSIYDMVYYWPHYTPIK--YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQL  291 (425)
T ss_dssp             STTCEEEEECTTCSTTTSCCC--SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHH
T ss_pred             ECCCEEEEECCCCCCCCCCCC--CCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHH---HHHCCCCCCCHHHHH
T ss_conf             239689971432343323333--456854999815510123323101899689899999998---641057773689999


Q ss_pred             HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCCCHHHHCCCHH
Q ss_conf             988899762---------00468988999999999999999984699388612452799997378876541023127979
Q batch____       307 AGFACLNEV---------AQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVE  377 (426)
Q Consensus       307 aa~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~~~  377 (426)
                      ++.+.+...         ..+.+.+..++.-+..++.+.+.+.+.+...-..-........+.........+........
T Consensus       292 aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~  371 (425)
T d2hoxa1         292 RSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE  371 (425)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
T ss_conf             99999602013456555548999999999999999999999863576300345655432210013778761699867898


Q ss_pred             HHHHHHHHHHHCCEEEECC-----CCCEEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999789599025-----66127731557899999999999999870
Q batch____       378 RFKRFFHMMLDEGVYLAPS-----AFEAGFMSVAHSMEDINNTIDAARRVFAK  425 (426)
Q Consensus       378 ~~~~~~~~l~~~Gv~~~p~-----~~~~~~ls~~~t~edid~~~~~l~~~l~~  425 (426)
                      ....+...+.++||.+.|+     +...+|+|++.|++++|+++++|++.+++
T Consensus       372 ~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         372 EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf             08999999996694997170238988659999139989999999999998726