BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (403 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7ZP88 Protease elaD n=37 Tax=Enterobacteriaceae RepID=... 770 0.0 UniRef50_A9MJD1 Deubiquitinase sseL n=10 Tax=Salmonella enterica... 120 6e-26 UniRef50_A9N5C6 Deubiquitinase sseL n=29 Tax=Salmonella enterica... 118 4e-25 UniRef50_UPI000197C800 deubiquitinase n=1 Tax=Providencia rettge... 113 2e-23 >UniRef50_A7ZP88 Protease elaD n=37 Tax=Enterobacteriaceae RepID=ELAD_ECO24 Length = 406 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/406 (93%), Positives = 383/406 (94%), Gaps = 3/406 (0%) Query: 1 MMVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKF 60 MMVTVVSNYCQLSQ QLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKF Sbjct: 1 MMVTVVSNYCQLSQKQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKF 60 Query: 61 GKEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKS---HDSDDLLFKK 117 GKEAEDILYHIVR PTNETLSIIRLIKNACLKLYNLAH ATN PLK +SD LLFKK Sbjct: 61 GKEAEDILYHIVRNPTNETLSIIRLIKNACLKLYNLAHTATNFPLKPTGPDNSDVLLFKK 120 Query: 118 LFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIACYLQK 177 LFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEI CYLQK Sbjct: 121 LFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIDCYLQK 180 Query: 178 IAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSL 237 IAANAKNT+VNYPTGLYVPYSTRTHLEDALNENIKSDPSWP VQLFPINTGGHWILVSL Sbjct: 181 IAANAKNTEVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPKAVQLFPINTGGHWILVSL 240 Query: 238 QKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPE 297 QKIVN+KNN QIKCVIFNSLRALG+DKENSLKRVINSFNSE MGEMSNNNIKVHL EPE Sbjct: 241 QKIVNEKNNTQQIKCVIFNSLRALGHDKENSLKRVINSFNSEFMGEMSNNNIKVHLTEPE 300 Query: 298 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYE 357 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKN+ADRFKKYSAEEQYE Sbjct: 301 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNYADRFKKYSAEEQYE 360 Query: 358 IDFQHRLANRNCYLDKYGDANINHYYRNLEIKHSQPKNRASGKRVS 403 IDFQHRL NRNCYLDKYGDA IN Y LEIKHSQPKNRASGKRVS Sbjct: 361 IDFQHRLVNRNCYLDKYGDARINASYTQLEIKHSQPKNRASGKRVS 406 >UniRef50_A9MJD1 Deubiquitinase sseL n=10 Tax=Salmonella enterica RepID=SSEL_SALAR Length = 340 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 166/358 (46%), Gaps = 40/358 (11%) Query: 2 MVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFG 61 M V++ +LS Q ++E+ V++E L L + +GD+ I+LL N+AL D G Sbjct: 1 MNICVNSLYRLSTPQFQNLYSEE--VSDEGLALLIREVENGDQNCIDLLCNLALRNDDLG 58 Query: 62 KEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSP 121 + E IL+ + + + I + I ACL LY A N+ + +++D FKKL P Sbjct: 59 HKVEKILFDLFSGKKHGSPDIDKKINQACLMLYQTA----NNDIAKNNTD---FKKLHIP 111 Query: 122 SKLMTIIGDEIPLISEKQSLSKVLLNDE----NNELSDGTNFWDKNRQLTTDEIACYLQK 177 S+L+ + G P S+K ++ +L D+ E N W R +++DE++ Q Sbjct: 112 SRLLYMAGSATPDFSKKLEIAHKILGDQIAQTEEEQVGVENLWCPARMVSSDELSRATQG 171 Query: 178 IAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSL 237 + + VNYP GL P + L L+E + NEV F INT HWI Sbjct: 172 M-TQGLSLSVNYPIGLIHPTTGENVLSAQLHEKVAQSGLSDNEV--FLINTESHWIFCLF 228 Query: 238 QKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPE 297 KI K IKC+IFN+ L + + ++ +++ G E + Sbjct: 229 YKIAEK------IKCLIFNTHHDLNQNTKQEIRAA-----AKIAGASE---------EGD 268 Query: 298 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQ 355 + F+ DLQ + CG F C A +++ N P +L+ +++ F + S EEQ Sbjct: 269 VNFIEIDLQNNVPNGCGLF-CFQALQLLSATGQND---PVAVLREYSENFLRLSVEEQ 322 >UniRef50_A9N5C6 Deubiquitinase sseL n=29 Tax=Salmonella enterica RepID=SSEL_SALPB Length = 340 Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 105/366 (28%), Positives = 166/366 (45%), Gaps = 39/366 (10%) Query: 2 MVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFG 61 M V++ +LS Q ++E V++E L L +G++ I+LL N+AL D G Sbjct: 1 MNICVNSLYRLSTPQFHSLYSED--VSDEALALLIGEVENGNQNCIDLLCNLALRNDDLG 58 Query: 62 KEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSP 121 + E +L+ + + + I + I ACL L+ IA N K D+ +KKL +P Sbjct: 59 HKVEKLLFDLFSGKRSGSPDIDKKINQACLVLH---QIANNDITK----DNTEWKKLHAP 111 Query: 122 SKLMTIIGDEIPLISEKQSLSKVLLNDE----NNELSDGTNFWDKNRQLTTDEIACYLQK 177 S+L+ + G +S+K ++ ++ D+ + E N W R L++DE+A Q Sbjct: 112 SRLLYMAGSATTDLSKKIGIAHKIMGDQFAQTDQEQVGVENLWCGARMLSSDELAAATQG 171 Query: 178 IAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSL 237 + + VNYP GL P + L L E I NEV F +NTG HW+L Sbjct: 172 LVQESPLLSVNYPIGLIHPTTKENILSTQLLEKIAQSGLSHNEV--FLVNTGDHWLLCLF 229 Query: 238 QKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPE 297 K+ K IKC+IFN+ L EN+ + +I + + E E Sbjct: 230 YKLAEK------IKCLIFNTYYDL---NENTKQEIIEAAKIAGISE-----------SDE 269 Query: 298 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYE 357 + F+ +LQ + CG F C +++ N P T L+ A++F S EEQ Sbjct: 270 VNFIEMNLQNNVPNGCGLF-CYHTIQLLSNAGQND---PVTTLREFAEKFLTLSVEEQAL 325 Query: 358 IDFQHR 363 + Q R Sbjct: 326 FNTQTR 331 >UniRef50_UPI000197C800 deubiquitinase n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C800 Length = 354 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 47/346 (13%) Query: 27 VTEELLQSLKKTALSGDEESIELLHNIALGYDKFGKEAEDILYHIVRTPTNETLSIIRLI 86 ++ E L SL ++A G+ SI+LLHNIAL D GK AE+IL+ + + I + I Sbjct: 32 ISPEALASLTESAGDGNLNSIDLLHNIALRQDSAGKNAENILFDLFSGKRSAVKGIDKEI 91 Query: 87 KNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFS-PSKLMTIIGDEIPLISEKQSLSKVL 145 + LY H +++F PSKL+ IIG + + +K L+ + Sbjct: 92 QKTSQVLYQSQH----------------HREVFKHPSKLLYIIGSTLEKLDDKIELTNLF 135 Query: 146 LNDENNELSDGTNFWDKNRQLTTDEIACYLQKIAANAKNTQVNYPTGLYVPYSTRTHLED 205 + + L + +N W NR +T DEI + N VN P GL + +L Sbjct: 136 VQNLPPVLGNESNLWGNNRMITCDEIDSSNKNNPTLPSNMMVNSPIGL---IQSGDNLLA 192 Query: 206 ALNENIKSDPSWPNEVQLFPINTG-GHWILVSL-------QKIVNKKNNKLQIKCVIFNS 257 + E + + +LFPIN HW+L L Q N ++ + KC++FNS Sbjct: 193 EIIEQKAPESVKLKQFELFPINVNDNHWVLFVLYQADPIHQPADNNQSANNKRKCILFNS 252 Query: 258 LRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPEIIFLHADLQQYLSQSCGAFV 317 YD + ++++ E++ K + E +I ++ ++QQ + CG FV Sbjct: 253 -----YD----------NVSTDIRKEITVAAKKADVAEEDITYIEGNIQQQVPNGCGLFV 297 Query: 318 CMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYEIDFQHR 363 E I+Q N+ PY LK + F K + EQ E + Q+R Sbjct: 298 V----EAIKQLTENTQQDPYDTLKEFQEIFIKKTMAEQKEFNIQNR 339 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7ZP88 Protease elaD n=37 Tax=Enterobacteriaceae RepID=... 578 e-163 UniRef50_A9N5C6 Deubiquitinase sseL n=29 Tax=Salmonella enterica... 416 e-115 UniRef50_A9MJD1 Deubiquitinase sseL n=10 Tax=Salmonella enterica... 410 e-113 UniRef50_UPI000197C800 deubiquitinase n=1 Tax=Providencia rettge... 347 4e-94 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_A7ZP88 Protease elaD n=37 Tax=Enterobacteriaceae RepID=ELAD_ECO24 Length = 406 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 378/406 (93%), Positives = 383/406 (94%), Gaps = 3/406 (0%) Query: 1 MMVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKF 60 MMVTVVSNYCQLSQ QLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKF Sbjct: 1 MMVTVVSNYCQLSQKQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKF 60 Query: 61 GKEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKS---HDSDDLLFKK 117 GKEAEDILYHIVR PTNETLSIIRLIKNACLKLYNLAH ATN PLK +SD LLFKK Sbjct: 61 GKEAEDILYHIVRNPTNETLSIIRLIKNACLKLYNLAHTATNFPLKPTGPDNSDVLLFKK 120 Query: 118 LFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIACYLQK 177 LFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEI CYLQK Sbjct: 121 LFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIDCYLQK 180 Query: 178 IAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSL 237 IAANAKNT+VNYPTGLYVPYSTRTHLEDALNENIKSDPSWP VQLFPINTGGHWILVSL Sbjct: 181 IAANAKNTEVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPKAVQLFPINTGGHWILVSL 240 Query: 238 QKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPE 297 QKIVN+KNN QIKCVIFNSLRALG+DKENSLKRVINSFNSE MGEMSNNNIKVHL EPE Sbjct: 241 QKIVNEKNNTQQIKCVIFNSLRALGHDKENSLKRVINSFNSEFMGEMSNNNIKVHLTEPE 300 Query: 298 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYE 357 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKN+ADRFKKYSAEEQYE Sbjct: 301 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNYADRFKKYSAEEQYE 360 Query: 358 IDFQHRLANRNCYLDKYGDANINHYYRNLEIKHSQPKNRASGKRVS 403 IDFQHRL NRNCYLDKYGDA IN Y LEIKHSQPKNRASGKRVS Sbjct: 361 IDFQHRLVNRNCYLDKYGDARINASYTQLEIKHSQPKNRASGKRVS 406 >UniRef50_A9N5C6 Deubiquitinase sseL n=29 Tax=Salmonella enterica RepID=SSEL_SALPB Length = 340 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 166/366 (45%), Gaps = 39/366 (10%) Query: 2 MVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFG 61 M V++ +LS Q ++E V++E L L +G++ I+LL N+AL D G Sbjct: 1 MNICVNSLYRLSTPQFHSLYSED--VSDEALALLIGEVENGNQNCIDLLCNLALRNDDLG 58 Query: 62 KEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSP 121 + E +L+ + + + I + I ACL L+ IA N K D+ +KKL +P Sbjct: 59 HKVEKLLFDLFSGKRSGSPDIDKKINQACLVLHQ---IANNDITK----DNTEWKKLHAP 111 Query: 122 SKLMTIIGDEIPLISEKQSLSKVLLNDE----NNELSDGTNFWDKNRQLTTDEIACYLQK 177 S+L+ + G +S+K ++ ++ D+ + E N W R L++DE+A Q Sbjct: 112 SRLLYMAGSATTDLSKKIGIAHKIMGDQFAQTDQEQVGVENLWCGARMLSSDELAAATQG 171 Query: 178 IAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSL 237 + + VNYP GL P + L L E I NEV F +NTG HW+L Sbjct: 172 LVQESPLLSVNYPIGLIHPTTKENILSTQLLEKIAQSGLSHNEV--FLVNTGDHWLLCLF 229 Query: 238 QKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPE 297 K+ K IKC+IFN+ L EN+ + +I + + E E Sbjct: 230 YKLAEK------IKCLIFNTYYDL---NENTKQEIIEAAKIAGISE-----------SDE 269 Query: 298 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYE 357 + F+ +LQ + CG F C +++ N P T L+ A++F S EEQ Sbjct: 270 VNFIEMNLQNNVPNGCGLF-CYHTIQLLSNAGQND---PVTTLREFAEKFLTLSVEEQAL 325 Query: 358 IDFQHR 363 + Q R Sbjct: 326 FNTQTR 331 >UniRef50_A9MJD1 Deubiquitinase sseL n=10 Tax=Salmonella enterica RepID=SSEL_SALAR Length = 340 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 103/366 (28%), Positives = 169/366 (46%), Gaps = 40/366 (10%) Query: 2 MVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFG 61 M V++ +LS Q ++E+ V++E L L + +GD+ I+LL N+AL D G Sbjct: 1 MNICVNSLYRLSTPQFQNLYSEE--VSDEGLALLIREVENGDQNCIDLLCNLALRNDDLG 58 Query: 62 KEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFSP 121 + E IL+ + + + I + I ACL LY A N+ + +++D FKKL P Sbjct: 59 HKVEKILFDLFSGKKHGSPDIDKKINQACLMLYQTA----NNDIAKNNTD---FKKLHIP 111 Query: 122 SKLMTIIGDEIPLISEKQSLSKVLLNDE----NNELSDGTNFWDKNRQLTTDEIACYLQK 177 S+L+ + G P S+K ++ +L D+ E N W R +++DE++ Q Sbjct: 112 SRLLYMAGSATPDFSKKLEIAHKILGDQIAQTEEEQVGVENLWCPARMVSSDELSRATQG 171 Query: 178 IAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTGGHWILVSL 237 + + VNYP GL P + L L+E + NEV F INT HWI Sbjct: 172 M-TQGLSLSVNYPIGLIHPTTGENVLSAQLHEKVAQSGLSDNEV--FLINTESHWIFCLF 228 Query: 238 QKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPE 297 KI K IKC+IFN+ L + + ++ +++ G E + Sbjct: 229 YKIAEK------IKCLIFNTHHDLNQNTKQEIRAA-----AKIAGASE---------EGD 268 Query: 298 IIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYE 357 + F+ DLQ + CG F C A +++ N P +L+ +++ F + S EEQ Sbjct: 269 VNFIEIDLQNNVPNGCGLF-CFQALQLLSATGQND---PVAVLREYSENFLRLSVEEQTL 324 Query: 358 IDFQHR 363 + + R Sbjct: 325 FNTETR 330 >UniRef50_UPI000197C800 deubiquitinase n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C800 Length = 354 Score = 347 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 97/361 (26%), Positives = 160/361 (44%), Gaps = 49/361 (13%) Query: 12 LSQTQLSQTFAEKFTVTEELLQSLKKTALSGDEESIELLHNIALGYDKFGKEAEDILYHI 71 L+ Q + F + ++ E L SL ++A G+ SI+LLHNIAL D GK AE+IL+ + Sbjct: 19 LTIEQFNGLF--EKNISPEALASLTESAGDGNLNSIDLLHNIALRQDSAGKNAENILFDL 76 Query: 72 VRTPTNETLSIIRLIKNACLKLYNLAHIATNSPLKSHDSDDLLFKKLFS-PSKLMTIIGD 130 + I + I+ LY H +++F PSKL+ IIG Sbjct: 77 FSGKRSAVKGIDKEIQKTSQVLYQSQH----------------HREVFKHPSKLLYIIGS 120 Query: 131 EIPLISEKQSLSKVLLNDENNELSDGTNFWDKNRQLTTDEIACYLQKIAANAKNTQVNYP 190 + + +K L+ + + + L + +N W NR +T DEI + N VN P Sbjct: 121 TLEKLDDKIELTNLFVQNLPPVLGNESNLWGNNRMITCDEIDSSNKNNPTLPSNMMVNSP 180 Query: 191 TGLYVPYSTRTHLEDALNENIKSDPSWPNEVQLFPINTG-GHWILVSLQ-------KIVN 242 GL + +L + E + + +LFPIN HW+L L N Sbjct: 181 IGLI---QSGDNLLAEIIEQKAPESVKLKQFELFPINVNDNHWVLFVLYQADPIHQPADN 237 Query: 243 KKNNKLQIKCVIFNSLRALGYDKENSLKRVINSFNSELMGEMSNNNIKVHLNEPEIIFLH 302 ++ + KC++FNS ++ ++++ E++ K + E +I ++ Sbjct: 238 NQSANNKRKCILFNSY---------------DNVSTDIRKEITVAAKKADVAEEDITYIE 282 Query: 303 ADLQQYLSQSCGAFVCMAAQEVIEQRESNSDSAPYTLLKNHADRFKKYSAEEQYEIDFQH 362 ++QQ + CG FV E I+Q N+ PY LK + F K + EQ E + Q+ Sbjct: 283 GNIQQQVPNGCGLFVV----EAIKQLTENTQQDPYDTLKEFQEIFIKKTMAEQKEFNIQN 338 Query: 363 R 363 R Sbjct: 339 R 339 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.120 0.303 Lambda K H 0.267 0.0371 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,269,312,084 Number of Sequences: 3077464 Number of extensions: 46734469 Number of successful extensions: 147432 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 7 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 147385 Number of HSP's gapped (non-prelim): 23 length of query: 403 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 272 effective length of database: 637,248,572 effective search space: 173331611584 effective search space used: 173331611584 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 94 (41.0 bits)