BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (108 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=H...   226   2e-58
UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein...   187   1e-46
UniRef50_B4T5V2 Protein HdeB n=33 Tax=Enterobacteriaceae RepID=B...    95   8e-19
UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella Rep...    94   1e-18
UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepI...    83   2e-15
UniRef50_C4X048 Putative uncharacterized protein n=5 Tax=Klebsie...    79   4e-14
UniRef50_D0ZCI7 Acid-resistance protein n=2 Tax=Edwardsiella Rep...    77   2e-13
UniRef50_B2PWH8 Putative uncharacterized protein n=5 Tax=Provide...    75   5e-13
UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providenc...    74   2e-12
UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobact...    59   7e-08
UniRef50_C1MAE5 Acid-resistance protein n=1 Tax=Citrobacter sp. ...    55   9e-07
UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5X...    45   8e-04
UniRef50_B2ICQ5 Putative uncharacterized protein n=1 Tax=Beijeri...    38   0.085

>UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=HDEB_ECOL6
          Length = 108

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60
           MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE
Sbjct: 1   MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60

Query: 61  ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN 108
           ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
Sbjct: 61  ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN 108


>UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein, repressed by H-NS
           n=1 Tax=Escherichia fergusonii ATCC 35469
           RepID=B7LQG7_ESCF3
          Length = 136

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 96/104 (92%)

Query: 5   SLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVY 64
           SLRK  +F+GAVAALSL NAQSALAA+E  KDM+CQEFI+LNPKAMTPVAWWMLHEETVY
Sbjct: 33  SLRKTLVFLGAVAALSLANAQSALAASEMPKDMSCQEFINLNPKAMTPVAWWMLHEETVY 92

Query: 65  KGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN 108
           KGGDTVTLNETDLTQIP+VIEYCKKNP+KNLYTFK + +N LPN
Sbjct: 93  KGGDTVTLNETDLTQIPQVIEYCKKNPEKNLYTFKEKNANVLPN 136


>UniRef50_B4T5V2 Protein HdeB n=33 Tax=Enterobacteriaceae RepID=B4T5V2_SALNS
          Length = 109

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)

Query: 1   MNISSLRKAFIFMGA-VAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLH 59
           MN  SL  A I + A V ++S+  A      N + K M+CQEF+DLNP+ M PVA+W+L+
Sbjct: 1   MNKFSLATAGIIVAALVTSVSVNAATDTTKTNVTPKGMSCQEFVDLNPQTMAPVAFWVLN 60

Query: 60  EETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDL 106
           E+  +KGGD V   ET+ T +P  +E CKKNPQ  L   K++   +L
Sbjct: 61  EDEDFKGGDYVDFQETETTAVPLAVELCKKNPQSELSKIKDEIKKEL 107


>UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZDS4_EDWTE
          Length = 120

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 5   SLRKAFIFMGAVAALSLVNAQSALAANESA-KDMTCQEFIDLNPKAMTPVAWWMLHEETV 63
           ++ K  +    +  L+L  A  A AA E+  ++MTC+EF++LNPKAMTPVA+WML+++T 
Sbjct: 14  TVMKMTLLAAVLGTLTLGCASLAQAATETTPQNMTCKEFVNLNPKAMTPVAFWMLNKDTD 73

Query: 64  YKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQ 101
           YKGGD V  NE +   +P+V+E CK++PQK +   K Q
Sbjct: 74  YKGGDYVDWNEVETVAVPQVMEVCKQHPQKKVMDIKGQ 111


>UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepID=A1JKE6_YERE8
          Length = 110

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 47/65 (72%)

Query: 36  DMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNL 95
           DMTC+EF+DLNPK+ TPV +W+L+++T YK GD V L+ETD    PKV+E CKK P+  L
Sbjct: 36  DMTCKEFLDLNPKSFTPVVYWVLNDDTQYKKGDYVDLHETDTIVTPKVVEVCKKAPESKL 95

Query: 96  YTFKN 100
              K 
Sbjct: 96  SEIKQ 100


>UniRef50_C4X048 Putative uncharacterized protein n=5 Tax=Klebsiella
          RepID=C4X048_KLEPN
          Length = 107

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 55/90 (61%)

Query: 6  LRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYK 65
          L KA +   A     L+ + +      + ++MTCQEF+D+NPK+MTPVA+W+++  T + 
Sbjct: 9  LPKALVLTVAATTFCLMTSPAFAVEETTPQNMTCQEFMDMNPKSMTPVAFWVVNRNTDFS 68

Query: 66 GGDTVTLNETDLTQIPKVIEYCKKNPQKNL 95
          GGD V  +E +   +PK+++ C KNP   L
Sbjct: 69 GGDYVDWHEVETVSVPKMLQECHKNPAAKL 98


>UniRef50_D0ZCI7 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZCI7_EDWTE
          Length = 110

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 7/104 (6%)

Query: 6   LRKAFIFMG-AVAALSLVNAQSA------LAANESAKDMTCQEFIDLNPKAMTPVAWWML 58
           ++    FMG +V AL+L  A +A      +A   + + MTC EF  +NPKAMTPV  W++
Sbjct: 1   MKSKTTFMGGSVLALTLALAGNACAQELTMATVTTPETMTCHEFTQMNPKAMTPVMVWVV 60

Query: 59  HEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA 102
           +++  YK GD V   +     +PKVI+ CKK P K +  F+NQ 
Sbjct: 61  NKDRDYKNGDYVDWQKVQTVMVPKVIKVCKKEPGKKIVEFRNQV 104


>UniRef50_B2PWH8 Putative uncharacterized protein n=5 Tax=Providencia
          RepID=B2PWH8_PROST
          Length = 99

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 48/66 (72%)

Query: 33 SAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQ 92
          + + M+CQEFI+LNP++  PVA W+ ++ET +KGGD V L E  + ++P+++E+CKK P+
Sbjct: 29 TPEKMSCQEFINLNPQSWAPVALWVTNQETQFKGGDYVALTEQSVAEVPQLVEFCKKKPE 88

Query: 93 KNLYTF 98
            L  +
Sbjct: 89 GTLQDY 94


>UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providencia rettgeri DSM 1131
          RepID=UPI000197C70E
          Length = 101

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 3/93 (3%)

Query: 6  LRKAFIFMGAVAALSL---VNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEET 62
          ++K FI +    A SL   V A      + + + M+CQE+IDLNP++  P+A WM ++ T
Sbjct: 1  MKKIFIPICITVATSLSFNVLATENEGMHLTPEKMSCQEYIDLNPQSWAPIAMWMSNQTT 60

Query: 63 VYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNL 95
           +KGGD V+L++  + ++P ++ +CK +P K+L
Sbjct: 61 QFKGGDFVSLSQQSIAEVPLIVNFCKLHPNKSL 93


>UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobacter youngae ATCC 29220
          RepID=UPI0001C33F4A
          Length = 108

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 1  MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60
          MNI  +  A + M  V A  +  A +  A   + +DMTC+EF+D++ +  T +A+ ++++
Sbjct: 1  MNIKMIVSAVMLMTFVMA-PMSRAFATQATEAAPQDMTCKEFVDMSHQYKTAIAFVIVNK 59

Query: 61 ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNL 95
           + +KG D V L E +   +PK+I  C + P   L
Sbjct: 60 NSDFKGDDYVPLQEVETVAVPKMINLCHQRPDTKL 94


>UniRef50_C1MAE5 Acid-resistance protein n=1 Tax=Citrobacter sp. 30_2
          RepID=C1MAE5_9ENTR
          Length = 96

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 27 ALAANESA-KDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIE 85
          A  A E+A +DMTC+EF+D++ +  T +A+ ++++ + +KG D V L+E +   +PK+++
Sbjct: 13 ATQATEAAPQDMTCKEFVDMSQQYKTAIAFVIVNKNSDFKGDDYVPLHEVETEAVPKMVK 72

Query: 86 YCKKNPQKNL 95
           C ++P   L
Sbjct: 73 MCHQHPNTKL 82


>UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5XU12_KLEP3
          Length = 121

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 16  VAALSLVNAQSALAANE-SAKDM-TCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLN 73
           V A+S V A   +A +E   +DM  CQ+++ L+P+  TP+  W++++    +  +    +
Sbjct: 23  VLAISSVAAGKNIAPDEVRTRDMMRCQDYLQLDPRTWTPMVIWLMNDPFSLQPPEWTDFH 82

Query: 74  ETDLTQIPKVIEYCKKNPQKNLYTFKNQ 101
           E +L   P + E C++ P   L + + +
Sbjct: 83  EAELVLTPILTEICRQEPDAWLTSLRER 110


>UniRef50_B2ICQ5 Putative uncharacterized protein n=1 Tax=Beijerinckia indica
          subsp. indica ATCC 9039 RepID=B2ICQ5_BEII9
          Length = 96

 Score = 38.1 bits (87), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 6  LRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYK 65
          +RK  +F  A+  +S + A++ +  + S   +TC++F+D + +    +A WM    +  K
Sbjct: 1  MRKLALFAAAMMTISAIPAKAQVMIDMSL--VTCKQFLDSDAERAAILASWMGGYFSASK 58

Query: 66 GGDTVTLNETDLTQIPKVIEYCKKNPQKNL 95
             TV L   +     KVI YC+ N  K L
Sbjct: 59 NLSTVDLRYVE-RNTKKVINYCEANKSKTL 87


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=H...   151   4e-36
UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein...   146   3e-34
UniRef50_B4T5V2 Protein HdeB n=33 Tax=Enterobacteriaceae RepID=B...   131   6e-30
UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella Rep...   130   1e-29
UniRef50_C4X048 Putative uncharacterized protein n=5 Tax=Klebsie...   121   9e-27
UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobact...   120   2e-26
UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providenc...   116   2e-25
UniRef50_D0ZCI7 Acid-resistance protein n=2 Tax=Edwardsiella Rep...   114   1e-24
UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5X...   112   2e-24
UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepI...   111   8e-24
UniRef50_C1MAE5 Acid-resistance protein n=1 Tax=Citrobacter sp. ...   105   5e-22
UniRef50_B2PWH8 Putative uncharacterized protein n=5 Tax=Provide...   100   2e-20

Sequences not found previously or not previously below threshold:

UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepI...    40   0.024


CONVERGED!
>UniRef50_P0AET3 Protein hdeB n=61 Tax=Enterobacteriaceae RepID=HDEB_ECOL6
          Length = 108

 Score =  151 bits (382), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60
           MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE
Sbjct: 1   MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60

Query: 61  ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN 108
           ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN
Sbjct: 61  ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN 108


>UniRef50_B7LQG7 Protein hdeB (10K-L protein) Periplasmic protein, repressed by H-NS
           n=1 Tax=Escherichia fergusonii ATCC 35469
           RepID=B7LQG7_ESCF3
          Length = 136

 Score =  146 bits (367), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 88/108 (81%), Positives = 97/108 (89%)

Query: 1   MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60
           M   SLRK  +F+GAVAALSL NAQSALAA+E  KDM+CQEFI+LNPKAMTPVAWWMLHE
Sbjct: 29  MKSLSLRKTLVFLGAVAALSLANAQSALAASEMPKDMSCQEFINLNPKAMTPVAWWMLHE 88

Query: 61  ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDLPN 108
           ETVYKGGDTVTLNETDLTQIP+VIEYCKKNP+KNLYTFK + +N LPN
Sbjct: 89  ETVYKGGDTVTLNETDLTQIPQVIEYCKKNPEKNLYTFKEKNANVLPN 136


>UniRef50_B4T5V2 Protein HdeB n=33 Tax=Enterobacteriaceae RepID=B4T5V2_SALNS
          Length = 109

 Score =  131 bits (329), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 1/107 (0%)

Query: 1   MNISSLRKAFIFMGA-VAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLH 59
           MN  SL  A I + A V ++S+  A      N + K M+CQEF+DLNP+ M PVA+W+L+
Sbjct: 1   MNKFSLATAGIIVAALVTSVSVNAATDTTKTNVTPKGMSCQEFVDLNPQTMAPVAFWVLN 60

Query: 60  EETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASNDL 106
           E+  +KGGD V   ET+ T +P  +E CKKNPQ  L   K++   +L
Sbjct: 61  EDEDFKGGDYVDFQETETTAVPLAVELCKKNPQSELSKIKDEIKKEL 107


>UniRef50_D0ZDS4 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZDS4_EDWTE
          Length = 120

 Score =  130 bits (326), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/100 (45%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 5   SLRKAFIFMGAVAALSLVNAQSALAANES-AKDMTCQEFIDLNPKAMTPVAWWMLHEETV 63
           ++ K  +    +  L+L  A  A AA E+  ++MTC+EF++LNPKAMTPVA+WML+++T 
Sbjct: 14  TVMKMTLLAAVLGTLTLGCASLAQAATETTPQNMTCKEFVNLNPKAMTPVAFWMLNKDTD 73

Query: 64  YKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQAS 103
           YKGGD V  NE +   +P+V+E CK++PQK +   K Q  
Sbjct: 74  YKGGDYVDWNEVETVAVPQVMEVCKQHPQKKVMDIKGQIK 113


>UniRef50_C4X048 Putative uncharacterized protein n=5 Tax=Klebsiella
           RepID=C4X048_KLEPN
          Length = 107

 Score =  121 bits (302), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 56/102 (54%)

Query: 3   ISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEET 62
             +L KA +   A     L+ + +      + ++MTCQEF+D+NPK+MTPVA+W+++  T
Sbjct: 6   KMNLPKALVLTVAATTFCLMTSPAFAVEETTPQNMTCQEFMDMNPKSMTPVAFWVVNRNT 65

Query: 63  VYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASN 104
            + GGD V  +E +   +PK+++ C KNP   L         
Sbjct: 66  DFSGGDYVDWHEVETVSVPKMLQECHKNPAAKLGDLSAVIKK 107


>UniRef50_UPI0001C33F4A acid-resistance protein n=1 Tax=Citrobacter youngae ATCC 29220
          RepID=UPI0001C33F4A
          Length = 108

 Score =  120 bits (300), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 1  MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60
          MNI  +  A + M  V A  +  A +  A   + +DMTC+EF+D++ +  T +A+ ++++
Sbjct: 1  MNIKMIVSAVMLMTFVMA-PMSRAFATQATEAAPQDMTCKEFVDMSHQYKTAIAFVIVNK 59

Query: 61 ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTF 98
           + +KG D V L E +   +PK+I  C + P   L   
Sbjct: 60 NSDFKGDDYVPLQEVETVAVPKMINLCHQRPDTKLGEL 97


>UniRef50_UPI000197C70E acid-resistance protein n=1 Tax=Providencia rettgeri DSM 1131
          RepID=UPI000197C70E
          Length = 101

 Score =  116 bits (290), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 60/96 (62%), Gaps = 3/96 (3%)

Query: 6  LRKAFIFMGAVAALSL---VNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEET 62
          ++K FI +    A SL   V A      + + + M+CQE+IDLNP++  P+A WM ++ T
Sbjct: 1  MKKIFIPICITVATSLSFNVLATENEGMHLTPEKMSCQEYIDLNPQSWAPIAMWMSNQTT 60

Query: 63 VYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTF 98
           +KGGD V+L++  + ++P ++ +CK +P K+L  +
Sbjct: 61 QFKGGDFVSLSQQSIAEVPLIVNFCKLHPNKSLKDY 96


>UniRef50_D0ZCI7 Acid-resistance protein n=2 Tax=Edwardsiella RepID=D0ZCI7_EDWTE
          Length = 110

 Score =  114 bits (284), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 7/106 (6%)

Query: 6   LRKAFIFMG-AVAALSLVNAQSA------LAANESAKDMTCQEFIDLNPKAMTPVAWWML 58
           ++    FMG +V AL+L  A +A      +A   + + MTC EF  +NPKAMTPV  W++
Sbjct: 1   MKSKTTFMGGSVLALTLALAGNACAQELTMATVTTPETMTCHEFTQMNPKAMTPVMVWVV 60

Query: 59  HEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASN 104
           +++  YK GD V   +     +PKVI+ CKK P K +  F+NQ   
Sbjct: 61  NKDRDYKNGDYVDWQKVQTVMVPKVIKVCKKEPGKKIVEFRNQVQE 106


>UniRef50_B5XU12 HdeB family protein n=5 Tax=Klebsiella RepID=B5XU12_KLEP3
          Length = 121

 Score =  112 bits (281), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 2/99 (2%)

Query: 8   KAFIFMGAVAALSLVNAQSALAANE-SAKDM-TCQEFIDLNPKAMTPVAWWMLHEETVYK 65
           K  +    V A+S V A   +A +E   +DM  CQ+++ L+P+  TP+  W++++    +
Sbjct: 15  KRLMAGIIVLAISSVAAGKNIAPDEVRTRDMMRCQDYLQLDPRTWTPMVIWLMNDPFSLQ 74

Query: 66  GGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQASN 104
             +    +E +L   P + E C++ P   L + + + ++
Sbjct: 75  PPEWTDFHEAELVLTPILTEICRQEPDAWLTSLRERLNS 113


>UniRef50_A1JKE6 Putative exported protein n=38 Tax=Yersinia RepID=A1JKE6_YERE8
          Length = 110

 Score =  111 bits (277), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/102 (42%), Positives = 61/102 (59%)

Query: 1   MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHE 60
           M+  SLR   +    ++A +   A +  A   +  DMTC+EF+DLNPK+ TPV +W+L++
Sbjct: 1   MSYKSLRNIALTGLLLSAAATSFAATTSATATTPSDMTCKEFLDLNPKSFTPVVYWVLND 60

Query: 61  ETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA 102
           +T YK GD V L+ETD    PKV+E CKK P+  L   K   
Sbjct: 61  DTQYKKGDYVDLHETDTIVTPKVVEVCKKAPESKLSEIKQDI 102


>UniRef50_C1MAE5 Acid-resistance protein n=1 Tax=Citrobacter sp. 30_2
          RepID=C1MAE5_9ENTR
          Length = 96

 Score =  105 bits (261), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 13 MGAVAALSLVNAQSALAANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTL 72
          M +V A  +  A +  A   + +DMTC+EF+D++ +  T +A+ ++++ + +KG D V L
Sbjct: 1  MTSVMA-PMTRALATQATEAAPQDMTCKEFVDMSQQYKTAIAFVIVNKNSDFKGDDYVPL 59

Query: 73 NETDLTQIPKVIEYCKKNPQKNLYTF 98
          +E +   +PK+++ C ++P   L   
Sbjct: 60 HEVETEAVPKMVKMCHQHPNTKLGEL 85


>UniRef50_B2PWH8 Putative uncharacterized protein n=5 Tax=Providencia
          RepID=B2PWH8_PROST
          Length = 99

 Score =  100 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/70 (41%), Positives = 49/70 (70%)

Query: 29 AANESAKDMTCQEFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCK 88
          +   + + M+CQEFI+LNP++  PVA W+ ++ET +KGGD V L E  + ++P+++E+CK
Sbjct: 25 STAVTPEKMSCQEFINLNPQSWAPVALWVTNQETQFKGGDYVALTEQSVAEVPQLVEFCK 84

Query: 89 KNPQKNLYTF 98
          K P+  L  +
Sbjct: 85 KKPEGTLQDY 94


>UniRef50_C1D4E4 HdeA n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4E4_LARHH
          Length = 110

 Score = 40.1 bits (92), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 38  TCQEFIDLNPKAMTPVAWWMLHEETVYKGG-DTVTLNETDLTQIPKVIEYCKKNPQKNLY 96
           TCQ+F+DL+      V +W        K     V +   +   IP V++ CK  P + L 
Sbjct: 40  TCQDFLDLDESFKPKVVYWAEGFNNKGKPDAAMVDVQGVEKI-IPVVVDQCKLKPTEKLM 98

Query: 97  TFKNQAS 103
                A 
Sbjct: 99  KIMKSAK 105


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.307    0.126    0.335 

Lambda     K      H
   0.267   0.0388    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 361,971,984
Number of Sequences: 3077464
Number of extensions: 11982529
Number of successful extensions: 30761
Number of sequences better than 1.0e-01: 15
Number of HSP's better than  0.1 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 30734
Number of HSP's gapped (non-prelim): 28
length of query: 108
length of database: 1,040,396,356
effective HSP length: 76
effective length of query: 32
effective length of database: 806,509,092
effective search space: 25808290944
effective search space used: 25808290944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 87 (38.2 bits)